Bovidae	ANCESTRAL SPECIES	33												ENSGT00960000186859	ENSGT00410000025802.g.b #19	ENSGT01030000235238.f #16	ENSGT00530000063808.a #21	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b	ENSGT00950000182808.b.b #23	ENSGT00730000111022 #24	ENSGT00410000025802.g.a #20	ENSGT01050000244850.A.a #25	ENSGT00390000004735.A #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00940000156650 #28	ENSGT00390000018621 #29	ENSGT00950000182846.a.a.a.a.a #30	ENSGT00390000003897.s.b.a.a.b.b ##31	ENSGT00390000002034 #32	ENSGT00940000153588.b #33	ENSGT00940000162426 #34	ENSGT00940000162843
Caprinae	ANCESTRAL SPECIES	45															ENSGT00530000063808.a #21	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b	ENSGT00950000182808.b.b #23	ENSGT00730000111022 #24	ENSGT00410000025802.g.a #20	ENSGT01050000244850.A.a #25	ENSGT00390000004735.A #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00940000156650 #28	ENSGT00390000018621 #29	ENSGT00950000182846.a.a.a.a.a #30	ENSGT00390000003897.s.b.a.a.b.a.a #31	ENSGT00390000002034 #32	ENSGT00940000153588.b #33	ENSGT00940000162426 #34	ENSGT00940000162843
Rambouillet Sheep	MODERN SPECIES	205	ENSOARG00020018387 #7	ENSOARG00020018399 #8	ENSOARG00020018429 #9	ENSOARG00020018446 #10	ENSOARG00020018476 #11	ENSOARG00020018489 #12	ENSOARG00020018504 #13	ENSOARG00020018525 #14	ENSOARG00020018581 #15	ENSOARG00020018615 #16	ENSOARG00020018678 #17	ENSOARG00020018703 #18	ENSOARG00020018745 #19	ENSOARG00020018798 #20	IKBKG (ENSOARG00020018901) #21	G6PD (ENSOARG00020019292) #22	SLC10A3 (ENSOARG00020019833) #23	UBL4A (ENSOARG00020019884) #24	PLXNA3 (ENSOARG00020019933) #25	FAM50A (ENSOARG00020020129) #26	GDI1 (ENSOARG00020020178) #27	ATP6AP1 (ENSOARG00020020475) #28	TAFAZZIN (ENSOARG00020020574) #29	DNASE1L1 (ENSOARG00020021378) #30	RPL10 (ENSOARG00020021458) #31	EMD (ENSOARG00020021549) #32	FLNA (ENSOARG00020021631) #33	TKTL1 (ENSOARG00020021994) #34	OPN1LW (ENSOARG00020022140) #35	MECP2 (ENSOARG00020022209) #36	IRAK1 (ENSOARG00020022349) #37
Goat	MODERN SPECIES	104														ENSCHIG00000016614 #19	IKBKG (ENSCHIG00000023525) #21	G6PD (ENSCHIG00000015034) #22	FAM3A (ENSCHIG00000011233)	UBL4A (ENSCHIG00000023962) #24
Bovinae	ANCESTRAL SPECIES	46													ENSGT00960000186859	ENSGT00410000025802.g.b #19	ENSGT00530000063808.a #21	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b	ENSGT00950000182808.b.b #23	ENSGT00730000111022 #24	ENSGT00410000025802.g.a #20	ENSGT01050000244850.A.a #25	ENSGT00390000004735.A #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00940000156650 #28	ENSGT00390000018621 #29	ENSGT00950000182846.a.a.a.a.a #30	ENSGT00390000003897.s.b.a.a.b.b ##31	ENSGT00390000002034 #32	ENSGT00940000153588.b #33	ENSGT00940000162426 #34	ENSGT00940000162843
Bos	ANCESTRAL SPECIES	36	ENSGT00480000042679.a	ENSGT00940000159162	ENSGT00940000154837.f.b.d.a	ENSGT00940000164266	ENSGT00940000157822	ENSGT00940000154837.f.b.d.b	ENSGT00940000159951.d.b.b.a.c.b	ENSGT00730000111097.e	ENSGT00940000158335	ENSGT00940000163888	ENSGT00940000162668	ENSGT00960000186859	ENSGT00410000025802.g.b #19	ENSGT00530000063808.a #21	ENSGT01100000263481.n.a.b.b.a.a.b.b	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b	ENSGT00950000182808.b.b #23	ENSGT00730000111022 #24	ENSGT00410000025802.g.a #20	ENSGT01050000244850.A.a #25	ENSGT00390000004735.A #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00940000156650 #28	ENSGT00390000018621 #29	ENSGT00950000182846.a.a.a.a.a #30	ENSGT00390000003897.s.b.a.a.b.b ##31	ENSGT00390000002034 #32	ENSGT00940000153588.b #33	ENSGT00940000162426 #34	ENSGT00940000162843
Bos_a	ANCESTRAL SPECIES	39	ENSGT00940000154837.f.b.d.b	ENSGT00940000159951.d.b.b.a.c.b	ENSGT00730000111097.e	ENSGT00940000158335	ENSGT00940000163888	ENSGT00940000162668	ENSGT00940000161825.v.a.a.a ##7	ENSGT00940000161825.v.a.b ##7	ENSGT00390000001700.a.b.b.a.b	ENSGT00910000144363.g.a.a.a.a.a #12	ENSGT00910000144363.g.a.a.a.a.b ##12	ENSGT00940000154891	ENSGT00410000025802.g.b #19	ENSGT00530000063808.a #21	ENSGT01100000263481.n.a.b.b.a.a.b.b	ENSGT00530000063435.a #22	ENSGT00950000182808.b.b #23	ENSGT00730000111022 #24	ENSGT00410000025802.g.a #20	ENSGT01050000244850.A.a #25	ENSGT00390000004735.A #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00940000156650 #28	ENSGT00390000018621 #29	ENSGT00950000182846.a.a.a.a.a #30	ENSGT00390000003897.s.a ##31	ENSGT00390000002034 #32	ENSGT00940000153588.b #33	ENSGT00940000162426 #34	ENSGT00940000162843	ENSGT01030000234549.a.a.a.b #35
Domestic yak	MODERN SPECIES	69	ENSBGRG00000026345	ENSBGRG00000026343	ENSBGRG00000026339	ENSBGRG00000026338	ENSBGRG00000026335 ##7	ENSBGRG00000026333 ##7	ENSBGRG00000026332 #8	ENSBGRG00000026328	ENSBGRG00000026327 #12	ENSBGRG00000026324 ##12	ENSBGRG00000026319 ##16	ENSBGRG00000026315	ENSBGRG00000026304 #19	IKBKG (ENSBGRG00000026284) #21	ENSBGRG00000026272	G6PD (ENSBGRG00000026248) #22	SLC10A3 (ENSBGRG00000026237) #23	UBL4A (ENSBGRG00000026234) #24	ENSBGRG00000026228 #20	PLXNA3 (ENSBGRG00000024820) #25	FAM50A (ENSBGRG00000024395) #26	ATP6AP1 (ENSBGRG00000024299) #28	TAFAZZIN (ENSBGRG00000024079) #29	DNASE1L1 (ENSBGRG00000024010) #30	ENSBGRG00000023896 ##31	EMD (ENSBGRG00000023778) #32	GDI1 (ENSBGRG00000023696) #27	FLNA (ENSBGRG00000023487) #33	TKTL1 (ENSBGRG00000023403) #34	ENSBGRG00000023305 #35	MECP2 (ENSBGRG00000023220) #36
Bos_b	ANCESTRAL SPECIES	31	ENSGT00940000158335	ENSGT00940000163888	ENSGT00940000162668	ENSGT00960000192909	ENSGT00940000161825.v.a.a.a ##7	ENSGT00390000012182.i.a.b	ENSGT00390000012182.i.a.a.b	ENSGT00940000161825.v.a.b ##7	ENSGT00910000144363.g.a.a.a.a.a.a.a #12	ENSGT00910000144363.g.a.a.a.a.b ##12	ENSGT00960000186859	ENSGT00410000025802.g.b #19	ENSGT00940000160561.d.b	ENSGT00530000063808.a #21	ENSGT01100000263481.n.a.b.b.a.a.b.b	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b	ENSGT00950000182808.b.b #23	ENSGT00730000111022 #24	ENSGT00410000025802.g.a #20	ENSGT01050000244850.A.a #25	ENSGT00390000004735.A #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00940000156650 #28	ENSGT00390000018621 #29	ENSGT00950000182846.a.a.a.a.a #30	ENSGT00390000003897.s.b.a.a.b.b ##31	ENSGT00390000002034 #32	ENSGT00940000153588.b #33	ENSGT00940000162426 #34	ENSGT00940000162843
Hybrid Bos Indicus	MODERN SPECIES	315	FAM133A (ENSBIXG00005014766)	ENSBIXG00005005495	ENSBIXG00005014508	ENSBIXG00005014480	PABPC5 (ENSBIXG00005006433)	ENSBIXG00005014439	ENSBIXG00005014423 ##7	ENSBIXG00005014407	ENSBIXG00005005973 ##7	ENSBIXG00005006735 #12	ENSBIXG00005014316	ENSBIXG00005001881 #19	ENSBIXG00005014255	ENSBIXG00005000250	IKBKG (ENSBIXG00005014233) #21	G6PD (ENSBIXG00005014158) #22	ENSBIXG00005014028	SLC10A3 (ENSBIXG00005013999) #23	ENSBIXG00005013979 #24	LAGE3 (ENSBIXG00005006122) #20	PLXNA3 (ENSBIXG00005013935) #25	FAM50A (ENSBIXG00005013872) #26	GDI1 (ENSBIXG00005001727) #27	ATP6AP1 (ENSBIXG00005001714) #28	ENSBIXG00005013746 #29	DNASE1L1 (ENSBIXG00005005490) #30	ENSBIXG00005001627 ##31	EMD (ENSBIXG00005013423) #32	FLNA (ENSBIXG00005013367) #33	TKTL1 (ENSBIXG00005013244) #34	TEX28 (ENSBIXG00005013213)
Cow	MODERN SPECIES	177	ENSBTAG00000049694	ENSBTAG00000033445 ##7	ENSBTAG00000049844	ENSBTAG00000036343 ##7	ENSBTAG00000049678 #12	ENSBTAG00000048281 ##12	ENSBTAG00000054052 #12	ENSBTAG00000049584 #12	ENSBTAG00000052652	ENSBTAG00000053848 #19	ENSBTAG00000055292	ENSBTAG00000048914 #19	ENSBTAG00000001900	IKBKG (ENSBTAG00000006268) #21	ENSBTAG00000053534	G6PD (ENSBTAG00000019512) #22	FAM3A (ENSBTAG00000012747)	SLC10A3 (ENSBTAG00000014333) #23	UBL4A (ENSBTAG00000014331) #24	LAGE3 (ENSBTAG00000054868) #20	PLXNA3 (ENSBTAG00000008552) #25	FAM50A (ENSBTAG00000033032) #26	GDI1 (ENSBTAG00000012125) #27	ATP6AP1 (ENSBTAG00000012117) #28	TAFAZZIN (ENSBTAG00000007456) #29	DNASE1L1 (ENSBTAG00000007455) #30	RPL10 (ENSBTAG00000007454) ##31	EMD (ENSBTAG00000022314) #32	FLNA (ENSBTAG00000011190) #33	TKTL1 (ENSBTAG00000020127) #34	TEX28 (ENSBTAG00000020300)