Hystricomorpha	ANCESTRAL SPECIES	54	ENSGT00940000161397	ENSGT00940000158132	ENSGT00390000018904	ENSGT00950000183068.a.a	ENSGT00390000000360.r.a.a	ENSGT00390000000360.r.b	ENSGT00390000006885.a	ENSGT00390000012647.d	ENSGT00940000154783.f	ENSGT00940000160294	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT01050000244815.B.a.a	ENSGT00530000063808.a #21	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #23	ENSGT00950000182808.b.b	ENSGT00730000111022 #24	ENSGT00410000025802.g.a #25	ENSGT01050000244850.A.a #26	ENSGT00390000004735.B.a.a #27	ENSGT00950000182994.B.a.a.a #28	ENSGT00940000156650 #29	ENSGT00390000018621 #30	ENSGT00950000182846.a.a.a.a.a #31	ENSGT00390000003897.s.b.a.b.b ##32	ENSGT00390000002034	ENSGT00940000153588.b	ENSGT00940000162426 #33	ENSGT00940000162843 #34
Naked mole-rat female	MODERN SPECIES	31															ENSHGLG00000032904 #21	G6PD (ENSHGLG00000001124) #22	FAM3A (ENSHGLG00000005912) #23	ENSHGLG00000003702 #24	LAGE3 (ENSHGLG00000039993) #25	PLXNA3 (ENSHGLG00000002186) #26	ENSHGLG00000039319 #27	GDI1 (ENSHGLG00000003275) #28	ATP6AP1 (ENSHGLG00000002607) #29	ENSHGLG00000009984 #30	DNASE1L1 (ENSHGLG00000013868) #31	RPL10 (ENSHGLG00000002349) #32	TKTL1 (ENSHGLG00000042978) #33	ENSHGLG00000043472 #34	MECP2 (ENSHGLG00000000899) #35	IRAK1 (ENSHGLG00000002116) #36	HCFC1 (ENSHGLG00000001143) #37
Hystricomorpha_a	ANCESTRAL SPECIES	61	ENSGT00940000161397	ENSGT00940000158132	ENSGT00390000018904	ENSGT00950000183068.a.a	ENSGT00390000000360.r.a.a	ENSGT00390000000360.r.b	ENSGT00390000006885.a	ENSGT00390000012647.d	ENSGT00940000154783.f	ENSGT00940000160294	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT01050000244815.B.a.a	ENSGT00530000063808.a #21	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #23	ENSGT00950000182808.b.b	ENSGT00730000111022 #24	ENSGT00410000025802.g.a #25	ENSGT01050000244850.A.a #26	ENSGT00390000004735.B.a.a #27	ENSGT00950000182994.B.a.a.a #28	ENSGT00940000156650 #29	ENSGT00390000018621 #30	ENSGT00950000182846.a.a.a.a.a #31	ENSGT00390000003897.s.b.a.b.b ##32	ENSGT00390000002034	ENSGT00940000153588.b	ENSGT00940000162426 #33	ENSGT00940000162843 #34
Hystricomorpha_b	ANCESTRAL SPECIES	84															ENSGT00530000063808.a #21	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #23	ENSGT00950000182808.b.b	ENSGT00730000111022 #24	ENSGT00410000025802.g.a #25	ENSGT01050000244850.A.a #26	ENSGT00390000004735.B.a.a #27	ENSGT00950000182994.B.a.a.a #28	ENSGT00940000156650 #29	ENSGT00390000018621 #30	ENSGT00950000182846.a.a.a.a.a #31	ENSGT00390000003897.s.b.a.b.b ##32	ENSGT00390000002034	ENSGT00940000153588.b	ENSGT00940000162426 #33	ENSGT01030000234549.a.a.a.b
Degu	MODERN SPECIES	259															IKBKG (ENSODEG00000005911) #21	ENSODEG00000006077 #22	FAM3A (ENSODEG00000006189) #23	UBL4A (ENSODEG00000006287) #24	ENSODEG00000006315 #25	PLXNA3 (ENSODEG00000006368) #26	ENSODEG00000006510 #27	GDI1 (ENSODEG00000006550) #28	ATP6AP1 (ENSODEG00000003643) #29	TAFAZZIN (ENSODEG00000003758) #30	DNASE1L1 (ENSODEG00000003830) #31	ENSODEG00000003868 ##32	EMD (ENSODEG00000003890)	FLNA (ENSODEG00000004055)	TKTL1 (ENSODEG00000004431) #33	ENSODEG00000004454	ENSODEG00000004473
Degu	MODERN SPECIES	226							ENSODEG00000020167	PCDHAC2 (ENSODEG00000012473)	PCDHB1 (ENSODEG00000019919)	PCDHB2 (ENSODEG00000013246)	ENSODEG00000012569	PCDHB4 (ENSODEG00000011616)	ENSODEG00000012750	ENSODEG00000011904	ENSODEG00000011435	ENSODEG00000012347 #22	ENSODEG00000012003	PCDHB6 (ENSODEG00000011685)	ENSODEG00000011819	PCDHB7 (ENSODEG00000014075)	PCDHB13 (ENSODEG00000012740)	ENSODEG00000012330	ENSODEG00000011147	ENSODEG00000011579	ENSODEG00000011345	PCDHB15 (ENSODEG00000013503)	SLC25A2 (ENSODEG00000020131)	ENSODEG00000014858	PCDHGA2 (ENSODEG00000014760)	PCDHGA3 (ENSODEG00000011289)	PCDHGB1 (ENSODEG00000012466)
Long-tailed chinchilla	MODERN SPECIES	287													ENSCLAG00000017603	ENSCLAG00000017457	IKBKG (ENSCLAG00000003721) #21	G6PD (ENSCLAG00000003284) #22	FAM3A (ENSCLAG00000002528) #23	SLC10A3 (ENSCLAG00000002307)	UBL4A (ENSCLAG00000002161) #24	LAGE3 (ENSCLAG00000002127) #25	PLXNA3 (ENSCLAG00000001910) #26	ENSCLAG00000002733 #27	GDI1 (ENSCLAG00000002425) #28	ATP6AP1 (ENSCLAG00000002132) #29	TAFAZZIN (ENSCLAG00000010970) #30	DNASE1L1 (ENSCLAG00000003494) #31	ENSCLAG00000003108 ##32	FLNA (ENSCLAG00000003106)	EMD (ENSCLAG00000002874)	TKTL1 (ENSCLAG00000001825) #33	ENSCLAG00000001715
Guinea pig	MODERN SPECIES	148	SPRY3 (ENSCPOG00000038854)	TMLHE (ENSCPOG00000005415)	CLIC2 (ENSCPOG00000007641)	RAB39B (ENSCPOG00000039524)	VBP1 (ENSCPOG00000013652)	ENSCPOG00000001882	CMC4 (ENSCPOG00000033896)	MTCP1 (ENSCPOG00000034922)	FUNDC2 (ENSCPOG00000015635)	F8 (ENSCPOG00000007773)	MPP1 (ENSCPOG00000008826)	DKC1 (ENSCPOG00000008825)	GAB3 (ENSCPOG00000002987)	ENSCPOG00000026136	IKBKG (ENSCPOG00000021550) #21	G6PD (ENSCPOG00000021395) #22	FAM3A (ENSCPOG00000019367) #23	SLC10A3 (ENSCPOG00000007289)	UBL4A (ENSCPOG00000040690) #24	ENSCPOG00000034445 #25	PLXNA3 (ENSCPOG00000011493) #26	ENSCPOG00000005974 #27	GDI1 (ENSCPOG00000032738) #28	ATP6AP1 (ENSCPOG00000005972) #29	TAFAZZIN (ENSCPOG00000020454) #30	DNASE1L1 (ENSCPOG00000005648) #31	ENSCPOG00000002355 ##32	EMD (ENSCPOG00000002642)	FLNA (ENSCPOG00000002672)	TKTL1 (ENSCPOG00000011767) #33	ENSCPOG00000021789 #34