Rodentia_A	ANCESTRAL SPECIES	9	ENSGT00950000183068.a.a	ENSGT00390000000360.r.b	ENSGT00390000006885.a	ENSGT00390000012647.d	ENSGT00940000154783.f	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294	ENSGT00390000005685	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT00410000025802.g.b ##26	ENSGT01050000244815.B.a.a #19	ENSGT00530000063808.a #21	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #23	ENSGT00950000182808.b.b #24	ENSGT00730000111022 #25	ENSGT00410000025802.g.a #26	ENSGT01050000244850.A.a #27	ENSGT00390000004735.A ##28	ENSGT00950000182994.B.a.a.a #29	ENSGT00940000156650 #30	ENSGT00390000018621 #31	ENSGT00950000182846.a.a.a.a.a #32	ENSGT00390000003897.s.b.a.b.b ##33	ENSGT00390000002034 #35	ENSGT00940000153588.b #34	ENSGT00940000162426 #36	ENSGT00940000162843
Sciuridae	ANCESTRAL SPECIES	27														ENSGT01050000244815.B.a.a #19	ENSGT00530000063808.a #21	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #23	ENSGT00950000182808.b.b #24	ENSGT00730000111022 #25	ENSGT00410000025802.g.a #26	ENSGT01050000244850.A.a #27	ENSGT00390000004735.A ##28	ENSGT00950000182994.B.a.a.a #29	ENSGT00940000156650 #30	ENSGT00390000018621 #31	ENSGT00950000182846.a.a.a.a.a #32	ENSGT00390000003897.s.b.a.b.b ##33	ENSGT00390000002034 #35	ENSGT00940000153588.b #34	ENSGT00940000162426 #36	ENSGT00940000162843
Marmotini	ANCESTRAL SPECIES	83														ENSGT01050000244815.B.a.a #19	ENSGT00530000063808.a #21	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #23	ENSGT00950000182808.b.b #24	ENSGT00730000111022 #25	ENSGT01050000244850.A.a #27	ENSGT00390000004735.A.e ##28	ENSGT00950000182994.B.a.a.a #29	ENSGT00940000156650 #30	ENSGT00390000018621 #31	ENSGT00950000182846.a.a.a.a.a #32	ENSGT00390000003897.s.b.a.b.b ##33	ENSGT00390000002034 #35	ENSGT00940000153588.b #34	ENSGT00940000162426 #36	ENSGT00940000162843	ENSGT01030000234549.a.a.a.b #37
Marmotini_b	ANCESTRAL SPECIES	124														ENSGT01050000244815.B.a.a #19	ENSGT00530000063808.a #21	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #23	ENSGT00950000182808.b.b #24	ENSGT00730000111022 #25	ENSGT01050000244850.A.a #27	ENSGT00390000004735.A.e ##28	ENSGT00950000182994.B.a.a.a #29	ENSGT00940000156650 #30	ENSGT00390000018621 #31	ENSGT00950000182846.a.a.a.a.a #32	ENSGT00390000003897.s.b.a.b.b ##33	ENSGT00390000002034 #35	ENSGT00940000153588.b #34	ENSGT00940000162426 #36	ENSGT00940000162843	ENSGT01030000234549.a.a.a.b #37
Squirrel	MODERN SPECIES	409															ENSSTOG00000027400 #19	G6PD (ENSSTOG00000021077) #22	IKBKG (ENSSTOG00000011082) #21	FAM3A (ENSSTOG00000022234) #23	SLC10A3 (ENSSTOG00000026515) #24	UBL4A (ENSSTOG00000022150) #25	PLXNA3 (ENSSTOG00000003432) #27	ENSSTOG00000004448 ##28	GDI1 (ENSSTOG00000004429) #29	ATP6AP1 (ENSSTOG00000004401) #30	TAFAZZIN (ENSSTOG00000011873) #31	DNASE1L1 (ENSSTOG00000011867) #32	ENSSTOG00000011857 ##33	EMD (ENSSTOG00000014689) #35	FLNA (ENSSTOG00000005036) #34	TKTL1 (ENSSTOG00000005014) #36	TEX28 (ENSSTOG00000022078)
Alpin marmot	MODERN SPECIES	136														ENSMMMG00000014778 #19	IKBKG (ENSMMMG00000014671) #21	G6PD (ENSMMMG00000014645) #22	FAM3A (ENSMMMG00000014550) #23	SLC10A3 (ENSMMMG00000014545) #24	UBL4A (ENSMMMG00000014537) #25	PLXNA3 (ENSMMMG00000014513) #27	FAM50A (ENSMMMG00000014490) ##28	GDI1 (ENSMMMG00000014475) #29	TAFAZZIN (ENSMMMG00000014302) #31	DNASE1L1 (ENSMMMG00000014299) #32	ENSMMMG00000014279 ##33	EMD (ENSMMMG00000014270) #35	FLNA (ENSMMMG00000010080) #34	TKTL1 (ENSMMMG00000010036) #36	TEX28 (ENSMMMG00000010023)	ENSMMMG00000010010 #37	MECP2 (ENSMMMG00000009970)
Eurasian red squirrel	MODERN SPECIES	156	MTCP1 (ENSSVLG00005016077)	ENSSVLG00005016124	F8 (ENSSVLG00005016200)	ENSSVLG00005016424	ENSSVLG00005016435	SMIM9 (ENSSVLG00005016452)	MPP1 (ENSSVLG00005016498)	DKC1 (ENSSVLG00005016642)	GAB3 (ENSSVLG00005016708)	ENSSVLG00005016985	ENSSVLG00005017050 ##26	ENSSVLG00005017122	ENSSVLG00005017166 #19	ENSSVLG00005017218	IKBKG (ENSSVLG00005017293) #21	G6PD (ENSSVLG00005017520) #22	FAM3A (ENSSVLG00005017584) #23	SLC10A3 (ENSSVLG00005017774) #24	UBL4A (ENSSVLG00005017819) #25	LAGE3 (ENSSVLG00005017858) #26	PLXNA3 (ENSSVLG00005017881) #27	FAM50A (ENSSVLG00005017921) ##28	GDI1 (ENSSVLG00005017962) #29	ATP6AP1 (ENSSVLG00005018016) #30	TAFAZZIN (ENSSVLG00005018196) #31	DNASE1L1 (ENSSVLG00005018343) #32	ENSSVLG00005018375 ##33	FLNA (ENSSVLG00005018546) #34	EMD (ENSSVLG00005019520) #35	TKTL1 (ENSSVLG00005017318) #36	TEX28 (ENSSVLG00005017596)
Hystricomorpha	ANCESTRAL SPECIES	54	ENSGT00940000161397	ENSGT00940000158132	ENSGT00390000018904	ENSGT00950000183068.a.a	ENSGT00390000000360.r.a.a	ENSGT00390000000360.r.b	ENSGT00390000006885.a	ENSGT00390000012647.d	ENSGT00940000154783.f	ENSGT00940000160294	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT01050000244815.B.a.a #19	ENSGT00530000063808.a #21	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #23	ENSGT00950000182808.b.b #24	ENSGT00730000111022 #25	ENSGT00410000025802.g.a #26	ENSGT01050000244850.A.a #27	ENSGT00390000004735.B.a.a #28	ENSGT00950000182994.B.a.a.a #29	ENSGT00940000156650 #30	ENSGT00390000018621 #31	ENSGT00950000182846.a.a.a.a.a #32	ENSGT00390000003897.s.b.a.b.b ##33	ENSGT00390000002034 #35	ENSGT00940000153588.b #34	ENSGT00940000162426 #36	ENSGT00940000162843
Hystricomorpha_a	ANCESTRAL SPECIES	61	ENSGT00940000161397	ENSGT00940000158132	ENSGT00390000018904	ENSGT00950000183068.a.a	ENSGT00390000000360.r.a.a	ENSGT00390000000360.r.b	ENSGT00390000006885.a	ENSGT00390000012647.d	ENSGT00940000154783.f	ENSGT00940000160294	ENSGT00940000158744	ENSGT00510000047092	ENSGT00940000159803	ENSGT01050000244815.B.a.a #19	ENSGT00530000063808.a #21	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #23	ENSGT00950000182808.b.b #24	ENSGT00730000111022 #25	ENSGT00410000025802.g.a #26	ENSGT01050000244850.A.a #27	ENSGT00390000004735.B.a.a #28	ENSGT00950000182994.B.a.a.a #29	ENSGT00940000156650 #30	ENSGT00390000018621 #31	ENSGT00950000182846.a.a.a.a.a #32	ENSGT00390000003897.s.b.a.b.b ##33	ENSGT00390000002034 #35	ENSGT00940000153588.b #34	ENSGT00940000162426 #36	ENSGT00940000162843
Hystricomorpha_b	ANCESTRAL SPECIES	84															ENSGT00530000063808.a #21	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #23	ENSGT00950000182808.b.b #24	ENSGT00730000111022 #25	ENSGT00410000025802.g.a #26	ENSGT01050000244850.A.a #27	ENSGT00390000004735.B.a.a #28	ENSGT00950000182994.B.a.a.a #29	ENSGT00940000156650 #30	ENSGT00390000018621 #31	ENSGT00950000182846.a.a.a.a.a #32	ENSGT00390000003897.s.b.a.b.b ##33	ENSGT00390000002034 #35	ENSGT00940000153588.b #34	ENSGT00940000162426 #36	ENSGT01030000234549.a.a.a.b #37
Degu	DUPLICATION
Degu	MODERN SPECIES	259															IKBKG (ENSODEG00000005911) #21	ENSODEG00000006077 #22	FAM3A (ENSODEG00000006189) #23	UBL4A (ENSODEG00000006287) #25	ENSODEG00000006315 #26	PLXNA3 (ENSODEG00000006368) #27	ENSODEG00000006510 #28	GDI1 (ENSODEG00000006550) #29	ATP6AP1 (ENSODEG00000003643) #30	TAFAZZIN (ENSODEG00000003758) #31	DNASE1L1 (ENSODEG00000003830) #32	ENSODEG00000003868 ##33	EMD (ENSODEG00000003890) #35	FLNA (ENSODEG00000004055) #34	TKTL1 (ENSODEG00000004431) #36	ENSODEG00000004454	ENSODEG00000004473 #37
Degu	MODERN SPECIES	226							ENSODEG00000020167	PCDHAC2 (ENSODEG00000012473)	PCDHB1 (ENSODEG00000019919)	PCDHB2 (ENSODEG00000013246)	ENSODEG00000012569	PCDHB4 (ENSODEG00000011616)	ENSODEG00000012750	ENSODEG00000011904	ENSODEG00000011435	ENSODEG00000012347 #22	ENSODEG00000012003	PCDHB6 (ENSODEG00000011685)	ENSODEG00000011819	PCDHB7 (ENSODEG00000014075)	PCDHB13 (ENSODEG00000012740)	ENSODEG00000012330	ENSODEG00000011147	ENSODEG00000011579	ENSODEG00000011345	PCDHB15 (ENSODEG00000013503)	SLC25A2 (ENSODEG00000020131)	ENSODEG00000014858	PCDHGA2 (ENSODEG00000014760)	PCDHGA3 (ENSODEG00000011289)	PCDHGB1 (ENSODEG00000012466)
Long-tailed chinchilla	MODERN SPECIES	287													ENSCLAG00000017603 #19	ENSCLAG00000017457 #20	IKBKG (ENSCLAG00000003721) #21	G6PD (ENSCLAG00000003284) #22	FAM3A (ENSCLAG00000002528) #23	SLC10A3 (ENSCLAG00000002307) #24	UBL4A (ENSCLAG00000002161) #25	LAGE3 (ENSCLAG00000002127) #26	PLXNA3 (ENSCLAG00000001910) #27	ENSCLAG00000002733 #28	GDI1 (ENSCLAG00000002425) #29	ATP6AP1 (ENSCLAG00000002132) #30	TAFAZZIN (ENSCLAG00000010970) #31	DNASE1L1 (ENSCLAG00000003494) #32	ENSCLAG00000003108 #33	FLNA (ENSCLAG00000003106) #34	EMD (ENSCLAG00000002874) #35	TKTL1 (ENSCLAG00000001825) #36	ENSCLAG00000001715 #37
Guinea pig	MODERN SPECIES	148	SPRY3 (ENSCPOG00000038854)	TMLHE (ENSCPOG00000005415)	CLIC2 (ENSCPOG00000007641)	RAB39B (ENSCPOG00000039524)	VBP1 (ENSCPOG00000013652)	ENSCPOG00000001882	CMC4 (ENSCPOG00000033896)	MTCP1 (ENSCPOG00000034922)	FUNDC2 (ENSCPOG00000015635)	F8 (ENSCPOG00000007773)	MPP1 (ENSCPOG00000008826)	DKC1 (ENSCPOG00000008825)	GAB3 (ENSCPOG00000002987)	ENSCPOG00000026136 #19	IKBKG (ENSCPOG00000021550) #21	G6PD (ENSCPOG00000021395) #22	FAM3A (ENSCPOG00000019367) #23	SLC10A3 (ENSCPOG00000007289) #24	UBL4A (ENSCPOG00000040690) #25	ENSCPOG00000034445 #26	PLXNA3 (ENSCPOG00000011493) #27	ENSCPOG00000005974 #28	GDI1 (ENSCPOG00000032738) #29	ATP6AP1 (ENSCPOG00000005972) #30	TAFAZZIN (ENSCPOG00000020454) #31	DNASE1L1 (ENSCPOG00000005648) #32	ENSCPOG00000002355 ##33	EMD (ENSCPOG00000002642) #35	FLNA (ENSCPOG00000002672) #34	TKTL1 (ENSCPOG00000011767) #36	ENSCPOG00000021789
Naked mole-rat female	MODERN SPECIES	31															ENSHGLG00000032904 #21	G6PD (ENSHGLG00000001124) #22	FAM3A (ENSHGLG00000005912) #23	ENSHGLG00000003702 #25	LAGE3 (ENSHGLG00000039993) #26	PLXNA3 (ENSHGLG00000002186) #27	ENSHGLG00000039319 #28	GDI1 (ENSHGLG00000003275) #29	ATP6AP1 (ENSHGLG00000002607) #30	ENSHGLG00000009984 #31	DNASE1L1 (ENSHGLG00000013868) #32	RPL10 (ENSHGLG00000002349) ##33	TKTL1 (ENSHGLG00000042978) #36	ENSHGLG00000043472	MECP2 (ENSHGLG00000000899)	IRAK1 (ENSHGLG00000002116)	HCFC1 (ENSHGLG00000001143)