Euarchontoglires_A	ANCESTRAL SPECIES	11	ENSGT00390000006885.a #7	ENSGT00390000012647	ENSGT00940000154783.f #8	ENSGT00390000016992 #10	ENSGT00940000163020 #11	ENSGT00940000160294 #9	ENSGT00390000005685 #12	ENSGT00940000158744 #13	ENSGT00510000047092 #14	ENSGT00940000159803 #15	ENSGT00390000001700.a.b.b	ENSGT00390000000062.x.b	ENSGT01050000244815.B.a.a #19	ENSGT00410000025802.g.b ##26	ENSGT00530000063808.a #21	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #23	ENSGT00950000182808.b.b #24	ENSGT00730000111022 #25	ENSGT00410000025802.g.a #26	ENSGT01050000244850.A.a #27	ENSGT00390000004735.A #28	ENSGT00950000182994.B.a.a.a #29	ENSGT00940000156650 #30	ENSGT00390000018621 #31	ENSGT00950000182846.a.a.a.a.a #32	ENSGT00390000003897.s.b.a.b.b #33	ENSGT00390000002034 #35	ENSGT00940000153588.b #34	ENSGT00940000162426 #36	ENSGT00940000162843 #37
Glires	ANCESTRAL SPECIES	10	ENSGT00390000006885.a #7	ENSGT00390000012647.d	ENSGT00940000154783.f #8	ENSGT00390000016992 #10	ENSGT00940000163020 #11	ENSGT00940000160294 #9	ENSGT00390000005685 #12	ENSGT00940000158744 #13	ENSGT00510000047092 #14	ENSGT00940000159803 #15	ENSGT00390000001700.a.b.b	ENSGT00390000000062.x.b	ENSGT01050000244815.B.a.a #19	ENSGT00410000025802.g.b ##26	ENSGT00530000063808.a #21	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #23	ENSGT00950000182808.b.b #24	ENSGT00730000111022 #25	ENSGT00410000025802.g.a #26	ENSGT01050000244850.A.a #27	ENSGT00390000004735.A #28	ENSGT00950000182994.B.a.a.a #29	ENSGT00940000156650 #30	ENSGT00390000018621 #31	ENSGT00950000182846.a.a.a.a.a #32	ENSGT00390000003897.s.b.a.b.b #33	ENSGT00390000002034 #35	ENSGT00940000153588.b #34	ENSGT00940000162426 #36	ENSGT00940000162843 #37
Rodentia	ANCESTRAL SPECIES	10	ENSGT00390000006885.a #7	ENSGT00390000012647.d	ENSGT00940000154783.f #8	ENSGT00390000016992 #10	ENSGT00940000163020 #11	ENSGT00940000160294 #9	ENSGT00390000005685 #12	ENSGT00940000158744 #13	ENSGT00510000047092 #14	ENSGT00940000159803 #15	ENSGT00390000001700.a.b.b	ENSGT00390000000062.x.b	ENSGT01050000244815.B.a.a #19	ENSGT00410000025802.g.b ##26	ENSGT00530000063808.a #21	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #23	ENSGT00950000182808.b.b #24	ENSGT00730000111022 #25	ENSGT00410000025802.g.a #26	ENSGT01050000244850.A.a #27	ENSGT00390000004735.A #28	ENSGT00950000182994.B.a.a.a #29	ENSGT00940000156650 #30	ENSGT00390000018621 #31	ENSGT00950000182846.a.a.a.a.a #32	ENSGT00390000003897.s.b.a.b.b #33	ENSGT00390000002034 #35	ENSGT00940000153588.b #34	ENSGT00940000162426 #36	ENSGT00940000162843 #37
Rodentia_A	ANCESTRAL SPECIES	9	ENSGT00950000183068.a.a	ENSGT00390000000360.r.b	ENSGT00390000006885.a #7	ENSGT00390000012647.d	ENSGT00940000154783.f #8	ENSGT00390000016992 #10	ENSGT00940000163020 #11	ENSGT00940000160294 #9	ENSGT00390000005685 #12	ENSGT00940000158744 #13	ENSGT00510000047092 #14	ENSGT00940000159803 #15	ENSGT00410000025802.g.b ##26	ENSGT01050000244815.B.a.a #19	ENSGT00530000063808.a #21	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #23	ENSGT00950000182808.b.b #24	ENSGT00730000111022 #25	ENSGT00410000025802.g.a #26	ENSGT01050000244850.A.a #27	ENSGT00390000004735.A #28	ENSGT00950000182994.B.a.a.a #29	ENSGT00940000156650 #30	ENSGT00390000018621 #31	ENSGT00950000182846.a.a.a.a.a #32	ENSGT00390000003897.s.b.a.b.b #33	ENSGT00390000002034 #35	ENSGT00940000153588.b #34	ENSGT00940000162426 #36	ENSGT00940000162843 #37
Sciuridae	ANCESTRAL SPECIES	27														ENSGT01050000244815.B.a.a #19	ENSGT00530000063808.a #21	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #23	ENSGT00950000182808.b.b #24	ENSGT00730000111022 #25	ENSGT00410000025802.g.a #26	ENSGT01050000244850.A.a #27	ENSGT00390000004735.A #28	ENSGT00950000182994.B.a.a.a #29	ENSGT00940000156650 #30	ENSGT00390000018621 #31	ENSGT00950000182846.a.a.a.a.a #32	ENSGT00390000003897.s.b.a.b.b #33	ENSGT00390000002034 #35	ENSGT00940000153588.b #34	ENSGT00940000162426 #36	ENSGT00940000162843 #37
Eurasian red squirrel	MODERN SPECIES	156	MTCP1 (ENSSVLG00005016077) #7	ENSSVLG00005016124 #8	F8 (ENSSVLG00005016200) #9	ENSSVLG00005016424 #10	ENSSVLG00005016435 #11	SMIM9 (ENSSVLG00005016452) #12	MPP1 (ENSSVLG00005016498) #13	DKC1 (ENSSVLG00005016642) #14	GAB3 (ENSSVLG00005016708) #15	ENSSVLG00005016985 #16	ENSSVLG00005017050 #17	ENSSVLG00005017122 #18	ENSSVLG00005017166 #19	ENSSVLG00005017218 #20	IKBKG (ENSSVLG00005017293) #21	G6PD (ENSSVLG00005017520) #22	FAM3A (ENSSVLG00005017584) #23	SLC10A3 (ENSSVLG00005017774) #24	UBL4A (ENSSVLG00005017819) #25	LAGE3 (ENSSVLG00005017858) #26	PLXNA3 (ENSSVLG00005017881) #27	FAM50A (ENSSVLG00005017921) #28	GDI1 (ENSSVLG00005017962) #29	ATP6AP1 (ENSSVLG00005018016) #30	TAFAZZIN (ENSSVLG00005018196) #31	DNASE1L1 (ENSSVLG00005018343) #32	ENSSVLG00005018375 #33	FLNA (ENSSVLG00005018546) #34	EMD (ENSSVLG00005019520) #35	TKTL1 (ENSSVLG00005017318) #36	TEX28 (ENSSVLG00005017596) #37
Marmotini	ANCESTRAL SPECIES	83														ENSGT01050000244815.B.a.a #19	ENSGT00530000063808.a #21	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #23	ENSGT00950000182808.b.b #24	ENSGT00730000111022 #25	ENSGT01050000244850.A.a #27	ENSGT00390000004735.A.e #28	ENSGT00950000182994.B.a.a.a #29	ENSGT00940000156650 #30	ENSGT00390000018621 #31	ENSGT00950000182846.a.a.a.a.a #32	ENSGT00390000003897.s.b.a.b.b #33	ENSGT00390000002034 #35	ENSGT00940000153588.b #34	ENSGT00940000162426 #36	ENSGT00940000162843 #37	ENSGT01030000234549.a.a.a.b
Marmotini_b	ANCESTRAL SPECIES	124														ENSGT01050000244815.B.a.a #19	ENSGT00530000063808.a #21	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #23	ENSGT00950000182808.b.b #24	ENSGT00730000111022 #25	ENSGT01050000244850.A.a #27	ENSGT00390000004735.A.e #28	ENSGT00950000182994.B.a.a.a #29	ENSGT00940000156650 #30	ENSGT00390000018621 #31	ENSGT00950000182846.a.a.a.a.a #32	ENSGT00390000003897.s.b.a.b.b #33	ENSGT00390000002034 #35	ENSGT00940000153588.b #34	ENSGT00940000162426 #36	ENSGT00940000162843 #37	ENSGT01030000234549.a.a.a.b
Squirrel	MODERN SPECIES	409															ENSSTOG00000027400 #19	G6PD (ENSSTOG00000021077) #22	IKBKG (ENSSTOG00000011082) #21	FAM3A (ENSSTOG00000022234) #23	SLC10A3 (ENSSTOG00000026515) #24	UBL4A (ENSSTOG00000022150) #25	PLXNA3 (ENSSTOG00000003432) #27	ENSSTOG00000004448 #28	GDI1 (ENSSTOG00000004429) #29	ATP6AP1 (ENSSTOG00000004401) #30	TAFAZZIN (ENSSTOG00000011873) #31	DNASE1L1 (ENSSTOG00000011867) #32	ENSSTOG00000011857 #33	EMD (ENSSTOG00000014689) #35	FLNA (ENSSTOG00000005036) #34	TKTL1 (ENSSTOG00000005014) #36	TEX28 (ENSSTOG00000022078) #37
Alpin marmot	MODERN SPECIES	136														ENSMMMG00000014778 #19	IKBKG (ENSMMMG00000014671) #21	G6PD (ENSMMMG00000014645) #22	FAM3A (ENSMMMG00000014550) #23	SLC10A3 (ENSMMMG00000014545) #24	UBL4A (ENSMMMG00000014537) #25	PLXNA3 (ENSMMMG00000014513) #27	FAM50A (ENSMMMG00000014490) #28	GDI1 (ENSMMMG00000014475) #29	TAFAZZIN (ENSMMMG00000014302) #31	DNASE1L1 (ENSMMMG00000014299) #32	ENSMMMG00000014279 #33	EMD (ENSMMMG00000014270) #35	FLNA (ENSMMMG00000010080) #34	TKTL1 (ENSMMMG00000010036) #36	TEX28 (ENSMMMG00000010023) #37	ENSMMMG00000010010	MECP2 (ENSMMMG00000009970)
Hystricomorpha	ANCESTRAL SPECIES	54	ENSGT00940000161397	ENSGT00940000158132	ENSGT00390000018904	ENSGT00950000183068.a.a	ENSGT00390000000360.r.a.a	ENSGT00390000000360.r.b	ENSGT00390000006885.a #7	ENSGT00390000012647.d	ENSGT00940000154783.f #8	ENSGT00940000160294 #9	ENSGT00940000158744 #13	ENSGT00510000047092 #14	ENSGT00940000159803 #15	ENSGT01050000244815.B.a.a #19	ENSGT00530000063808.a #21	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #23	ENSGT00950000182808.b.b #24	ENSGT00730000111022 #25	ENSGT00410000025802.g.a #26	ENSGT01050000244850.A.a #27	ENSGT00390000004735.B.a.a ##28	ENSGT00950000182994.B.a.a.a #29	ENSGT00940000156650 #30	ENSGT00390000018621 #31	ENSGT00950000182846.a.a.a.a.a #32	ENSGT00390000003897.s.b.a.b.b #33	ENSGT00390000002034 #35	ENSGT00940000153588.b #34	ENSGT00940000162426 #36	ENSGT00940000162843 #37
Hystricomorpha_a	ANCESTRAL SPECIES	61	ENSGT00940000161397	ENSGT00940000158132	ENSGT00390000018904	ENSGT00950000183068.a.a	ENSGT00390000000360.r.a.a	ENSGT00390000000360.r.b	ENSGT00390000006885.a #7	ENSGT00390000012647.d	ENSGT00940000154783.f #8	ENSGT00940000160294 #9	ENSGT00940000158744 #13	ENSGT00510000047092 #14	ENSGT00940000159803 #15	ENSGT01050000244815.B.a.a #19	ENSGT00530000063808.a #21	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #23	ENSGT00950000182808.b.b #24	ENSGT00730000111022 #25	ENSGT00410000025802.g.a #26	ENSGT01050000244850.A.a #27	ENSGT00390000004735.B.a.a ##28	ENSGT00950000182994.B.a.a.a #29	ENSGT00940000156650 #30	ENSGT00390000018621 #31	ENSGT00950000182846.a.a.a.a.a #32	ENSGT00390000003897.s.b.a.b.b #33	ENSGT00390000002034 #35	ENSGT00940000153588.b #34	ENSGT00940000162426 #36	ENSGT00940000162843 #37
Hystricomorpha_b	ANCESTRAL SPECIES	84															ENSGT00530000063808.a #21	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #23	ENSGT00950000182808.b.b #24	ENSGT00730000111022 #25	ENSGT00410000025802.g.a #26	ENSGT01050000244850.A.a #27	ENSGT00390000004735.B.a.a ##28	ENSGT00950000182994.B.a.a.a #29	ENSGT00940000156650 #30	ENSGT00390000018621 #31	ENSGT00950000182846.a.a.a.a.a #32	ENSGT00390000003897.s.b.a.b.b #33	ENSGT00390000002034 #35	ENSGT00940000153588.b #34	ENSGT00940000162426 #36	ENSGT01030000234549.a.a.a.b
Degu	MODERN SPECIES	259															IKBKG (ENSODEG00000005911) #21	ENSODEG00000006077 #22	FAM3A (ENSODEG00000006189) #23	UBL4A (ENSODEG00000006287) #25	ENSODEG00000006315 #26	PLXNA3 (ENSODEG00000006368) #27	ENSODEG00000006510 ##28	GDI1 (ENSODEG00000006550) #29	ATP6AP1 (ENSODEG00000003643) #30	TAFAZZIN (ENSODEG00000003758) #31	DNASE1L1 (ENSODEG00000003830) #32	ENSODEG00000003868 #33	EMD (ENSODEG00000003890) #35	FLNA (ENSODEG00000004055) #34	TKTL1 (ENSODEG00000004431) #36	ENSODEG00000004454	ENSODEG00000004473
Degu	MODERN SPECIES	226							ENSODEG00000020167	PCDHAC2 (ENSODEG00000012473)	PCDHB1 (ENSODEG00000019919)	PCDHB2 (ENSODEG00000013246)	ENSODEG00000012569	PCDHB4 (ENSODEG00000011616)	ENSODEG00000012750	ENSODEG00000011904	ENSODEG00000011435	ENSODEG00000012347 #22	ENSODEG00000012003	PCDHB6 (ENSODEG00000011685)	ENSODEG00000011819	PCDHB7 (ENSODEG00000014075)	PCDHB13 (ENSODEG00000012740)	ENSODEG00000012330	ENSODEG00000011147	ENSODEG00000011579	ENSODEG00000011345	PCDHB15 (ENSODEG00000013503)	SLC25A2 (ENSODEG00000020131)	ENSODEG00000014858	PCDHGA2 (ENSODEG00000014760)	PCDHGA3 (ENSODEG00000011289)	PCDHGB1 (ENSODEG00000012466)
Long-tailed chinchilla	MODERN SPECIES	287													ENSCLAG00000017603 #19	ENSCLAG00000017457	IKBKG (ENSCLAG00000003721) #21	G6PD (ENSCLAG00000003284) #22	FAM3A (ENSCLAG00000002528) #23	SLC10A3 (ENSCLAG00000002307) #24	UBL4A (ENSCLAG00000002161) #25	LAGE3 (ENSCLAG00000002127) #26	PLXNA3 (ENSCLAG00000001910) #27	ENSCLAG00000002733 ##28	GDI1 (ENSCLAG00000002425) #29	ATP6AP1 (ENSCLAG00000002132) #30	TAFAZZIN (ENSCLAG00000010970) #31	DNASE1L1 (ENSCLAG00000003494) #32	ENSCLAG00000003108 ##33	FLNA (ENSCLAG00000003106) #34	EMD (ENSCLAG00000002874) #35	TKTL1 (ENSCLAG00000001825) #36	ENSCLAG00000001715
Guinea pig	MODERN SPECIES	148	SPRY3 (ENSCPOG00000038854)	TMLHE (ENSCPOG00000005415)	CLIC2 (ENSCPOG00000007641)	RAB39B (ENSCPOG00000039524)	VBP1 (ENSCPOG00000013652)	ENSCPOG00000001882	CMC4 (ENSCPOG00000033896)	MTCP1 (ENSCPOG00000034922) #7	FUNDC2 (ENSCPOG00000015635) #8	F8 (ENSCPOG00000007773) #9	MPP1 (ENSCPOG00000008826) #13	DKC1 (ENSCPOG00000008825) #14	GAB3 (ENSCPOG00000002987) #15	ENSCPOG00000026136 #19	IKBKG (ENSCPOG00000021550) #21	G6PD (ENSCPOG00000021395) #22	FAM3A (ENSCPOG00000019367) #23	SLC10A3 (ENSCPOG00000007289) #24	UBL4A (ENSCPOG00000040690) #25	ENSCPOG00000034445 #26	PLXNA3 (ENSCPOG00000011493) #27	ENSCPOG00000005974 ##28	GDI1 (ENSCPOG00000032738) #29	ATP6AP1 (ENSCPOG00000005972) #30	TAFAZZIN (ENSCPOG00000020454) #31	DNASE1L1 (ENSCPOG00000005648) #32	ENSCPOG00000002355 #33	EMD (ENSCPOG00000002642) #35	FLNA (ENSCPOG00000002672) #34	TKTL1 (ENSCPOG00000011767) #36	ENSCPOG00000021789 #37
Naked mole-rat female	MODERN SPECIES	31															ENSHGLG00000032904 #21	G6PD (ENSHGLG00000001124) #22	FAM3A (ENSHGLG00000005912) #23	ENSHGLG00000003702 #25	LAGE3 (ENSHGLG00000039993) #26	PLXNA3 (ENSHGLG00000002186) #27	ENSHGLG00000039319 ##28	GDI1 (ENSHGLG00000003275) #29	ATP6AP1 (ENSHGLG00000002607) #30	ENSHGLG00000009984 #31	DNASE1L1 (ENSHGLG00000013868) #32	RPL10 (ENSHGLG00000002349) ##33	TKTL1 (ENSHGLG00000042978) #36	ENSHGLG00000043472 #37	MECP2 (ENSHGLG00000000899)	IRAK1 (ENSHGLG00000002116)	HCFC1 (ENSHGLG00000001143)
Rodentia_B	ANCESTRAL SPECIES	16	ENSGT00940000158132	ENSGT00390000018904	ENSGT00390000000360.r.b	ENSGT00390000006885.a #7	ENSGT00390000012647.d	ENSGT00940000154783.f #8	ENSGT00940000160294 #9	ENSGT00390000005685 #12	ENSGT00940000158744 #13	ENSGT00510000047092 #14	ENSGT00940000159803 #15	ENSGT01100000263574.b.j	ENSGT01050000244815.B.a.a #19	ENSGT00410000025802.g.b ##26	ENSGT00530000063808.a #21	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #23	ENSGT00950000182808.b.b #24	ENSGT00730000111022 #25	ENSGT00410000025802.g.a #26	ENSGT01050000244850.A.a #27	ENSGT00390000004735.A #28	ENSGT00950000182994.B.a.a.a #29	ENSGT00940000156650 #30	ENSGT00390000018621 #31	ENSGT00950000182846.a.a.a.a.a #32	ENSGT00390000003897.s.b.a.b.b #33	ENSGT00390000002034 #35	ENSGT00940000153588.b #34	ENSGT00940000162426 #36	ENSGT00940000162843 #37
Myomorpha	ANCESTRAL SPECIES	6	ENSGT00940000158132	ENSGT00390000018904	ENSGT00390000000360.r.b	ENSGT00390000006885.a #7	ENSGT00390000012647.d	ENSGT00940000154783.f #8	ENSGT00940000160294 #9	ENSGT00390000005685 #12	ENSGT00940000158744 #13	ENSGT00510000047092 #14	ENSGT00940000159803 #15	ENSGT01100000263574.b.j	ENSGT01050000244815.B.a.a #19	ENSGT00410000025802.g.b ##26	ENSGT00530000063808.a #21	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #23	ENSGT00950000182808.b.b #24	ENSGT00730000111022 #25	ENSGT00410000025802.g.a #26	ENSGT01050000244850.A.a #27	ENSGT00390000004735.A #28	ENSGT00950000182994.B.a.a.a #29	ENSGT00940000156650 #30	ENSGT00390000018621 #31	ENSGT00950000182846.a.a.a.a.a #32	ENSGT00390000003897.s.b.a.b.b #33	ENSGT00390000002034 #35	ENSGT00940000153588.b #34	ENSGT00940000162426 #36	ENSGT00940000162843 #37
Muroidea	ANCESTRAL SPECIES	13	ENSGT00940000158132	ENSGT00390000018904	ENSGT00390000000360.r.b	ENSGT00390000006885.a #7	ENSGT00390000012647.d	ENSGT00940000154783.f #8	ENSGT00940000160294 #9	ENSGT00390000005685 #12	ENSGT00940000158744 #13	ENSGT00510000047092 #14	ENSGT00940000159803 #15	ENSGT01100000263574.b.j	ENSGT01050000244815.B.a.a #19	ENSGT00410000025802.g.b ##26	ENSGT00530000063808.a #21	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #23	ENSGT00950000182808.b.b #24	ENSGT00730000111022 #25	ENSGT00410000025802.g.a #26	ENSGT01050000244850.A.a #27	ENSGT00390000004735.A #28	ENSGT00950000182994.B.a.a.a #29	ENSGT00940000156650 #30	ENSGT00390000018621 #31	ENSGT00950000182846.a.a.a.a.a #32	ENSGT00390000003897.s.b.a.b.b #33	ENSGT00390000002034 #35	ENSGT00940000153588.b #34	ENSGT00940000162426 #36	ENSGT00940000162843 #37
Muroidea_A	ANCESTRAL SPECIES	7	ENSGT00940000158132	ENSGT00390000018904	ENSGT00390000000360.r.b.a.a	ENSGT00390000006885.a #7	ENSGT00390000012647.d	ENSGT00940000154783.f #8	ENSGT00940000160294 #9	ENSGT00390000005685 #12	ENSGT00940000158744 #13	ENSGT00510000047092 #14	ENSGT00940000159803 #15	ENSGT01100000263574.b.j	ENSGT01050000244815.B.a.a #19	ENSGT00410000025802.g.b.q.a ##26	ENSGT00530000063808.a #21	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #23	ENSGT00950000182808.b.b #24	ENSGT00730000111022 #25	ENSGT00410000025802.g.a #26	ENSGT01050000244850.A.a #27	ENSGT00390000004735.A #28	ENSGT00950000182994.B.a.a.a #29	ENSGT00940000156650 #30	ENSGT00390000018621 #31	ENSGT00950000182846.a.a.a.a.a #32	ENSGT00390000003897.s.b.a.b.b #33	ENSGT00390000002034 #35	ENSGT00940000153588.b #34	ENSGT00940000162426 #36	ENSGT00940000162843 #37
Cricetidae	ANCESTRAL SPECIES	8	ENSGT00940000158132	ENSGT00390000018904	ENSGT00390000000360.r.b.a.a	ENSGT00390000006885.a #7	ENSGT00390000012647.d	ENSGT00940000154783.f.db.b #8	ENSGT00940000160294 #9	ENSGT00390000005685 #12	ENSGT00940000158744 #13	ENSGT00510000047092 #14	ENSGT00940000159803 #15	ENSGT01050000244815.B.a.a #19	ENSGT01100000263574.b.j	ENSGT00410000025802.g.b.q.a ##26	ENSGT00530000063808.a #21	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #23	ENSGT00950000182808.b.b #24	ENSGT00730000111022 #25	ENSGT00410000025802.g.a #26	ENSGT01050000244850.A.a #27	ENSGT00390000004735.A #28	ENSGT00950000182994.B.a.a.a #29	ENSGT00940000156650 #30	ENSGT00390000018621 #31	ENSGT00950000182846.a.a.a.a.a #32	ENSGT00390000003897.s.b.a.b.b #33	ENSGT00390000002034 #35	ENSGT00940000153588.b #34	ENSGT00940000162426 #36	ENSGT00940000162843 #37
Cricetinae	ANCESTRAL SPECIES	46	ENSGT00530000063582.a	ENSGT00940000158132	ENSGT00390000018904	ENSGT00390000000360.r.b.a.a	ENSGT00390000006885.a #7	ENSGT00390000012647.d	ENSGT00940000154783.f.db.b #8	ENSGT00940000160294 #9	ENSGT00390000005685 #12	ENSGT00940000158744 #13	ENSGT00510000047092 #14	ENSGT00940000159803 #15	ENSGT00410000025802.g.b.q.a ##26	ENSGT01050000244815.B.a.a #19	ENSGT00530000063808.a #21	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #23	ENSGT00950000182808.b.b #24	ENSGT00730000111022 #25	ENSGT00410000025802.g.a #26	ENSGT01050000244850.A.a #27	ENSGT00390000004735.A #28	ENSGT00950000182994.B.a.a.a #29	ENSGT00940000156650 #30	ENSGT00390000018621 #31	ENSGT00950000182846.a.a.a.a.a #32	ENSGT00390000003897.s.b.a.b.b #33	ENSGT00390000002034 #35	ENSGT00940000153588.b #34	ENSGT00940000162843 #37	ENSGT01030000234549.a.a.a.b
Chinese hamster chok1gshd	MODERN SPECIES	16	Rab39b (ENSCGRG00001022502)	ENSCGRG00001012855	Brcc3 (ENSCGRG00001000059)	Mtcp1 (ENSCGRG00001021448) #7	Cmc4 (ENSCGRG00001024106)	Fundc2 (ENSCGRG00001005074) #8	F8 (ENSCGRG00001018172) #9	Smim9 (ENSCGRG00001020847) #12	Mpp1 (ENSCGRG00001000334) #13	ENSCGRG00001014574 #14	Gab3 (ENSCGRG00001024780) #15	ENSCGRG00001000852 ##26	ENSCGRG00001018213	Or7r1 (ENSCGRG00001002331) #19	Ikbkg (ENSCGRG00001023852) #21	G6PDH (ENSCGRG00001009805) #22	Fam3a (ENSCGRG00001017590) #23	Ubl4a (ENSCGRG00001024649) #25	Lage3 (ENSCGRG00001006943) #26	Plxna3 (ENSCGRG00001018950) #27	Fam50a (ENSCGRG00001022147) #28	Gdi1 (ENSCGRG00001020747) #29	Atp6ap1 (ENSCGRG00001015351) #30	TAZ (ENSCGRG00001016189) #31	DNASE1L1 (ENSCGRG00001019882) #32	ENSCGRG00001008387 #33	Emd (ENSCGRG00001023962) #35	Flna (ENSCGRG00001013154) #34	ENSCGRG00001010950	Tex28 (ENSCGRG00001014288) #37	Opn1mw (ENSCGRG00001024157)
Golden Hamster	MODERN SPECIES	857															Ikbkg (ENSMAUG00000008491) #21	ENSMAUG00000008547 #22	Fam3a (ENSMAUG00000009961) #23	Slc10a3 (ENSMAUG00000005496) #24	Ubl4a (ENSMAUG00000019612) #25	Lage3 (ENSMAUG00000021750) #26	Plxna3 (ENSMAUG00000019645) #27	Fam50a (ENSMAUG00000020359) #28	Gdi1 (ENSMAUG00000001476) #29	Atp6ap1 (ENSMAUG00000014514) #30	Tafazzin (ENSMAUG00000001836) #31	Dnase1l1 (ENSMAUG00000005714) #32	ENSMAUG00000013615 #33	Emd (ENSMAUG00000016655) #35	Tex28 (ENSMAUG00000011775) #37	Opn1mw (ENSMAUG00000017549)	Mecp2 (ENSMAUG00000018195)
Cricetidae_B	ANCESTRAL SPECIES	28	ENSGT00940000158132	ENSGT00390000018904	ENSGT00390000000360.r.b.a.a	ENSGT00390000006885.a #7	ENSGT00390000012647.d	ENSGT00940000154783.f.db.b #8	ENSGT00940000160294 #9	ENSGT00390000005685 #12	ENSGT00940000158744 #13	ENSGT00510000047092 #14	ENSGT00940000159803 #15	ENSGT01050000244815.B.a.a #19	ENSGT01100000263574.b.j	ENSGT00410000025802.g.b.q.a ##26	ENSGT00530000063808.a #21	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #23	ENSGT00950000182808.b.b #24	ENSGT00730000111022 #25	ENSGT00410000025802.g.a #26	ENSGT01050000244850.A.a #27	ENSGT00390000004735.A #28	ENSGT00950000182994.B.a.a.a #29	ENSGT00940000156650 #30	ENSGT00390000018621 #31	ENSGT00950000182846.a.a.a.a.a #32	ENSGT00390000003897.s.b.a.b.b #33	ENSGT00390000002034 #35	ENSGT00940000153588.b #34	ENSGT00940000162426 #36	ENSGT00940000162843 #37
Northern American deer mouse	MODERN SPECIES	475	Mtcp1 (ENSPEMG00000030977) #7	Cmc4 (ENSPEMG00000024388)	ENSPEMG00000026725 #8	F8 (ENSPEMG00000014119) #9	Smim9 (ENSPEMG00000010945) #12	Mpp1 (ENSPEMG00000014261) #13	ENSPEMG00000022395	Dkc1 (ENSPEMG00000013348) #14	Gab3 (ENSPEMG00000012634) #15	Or13ae2 (ENSPEMG00000025767)	Or7r1 (ENSPEMG00000009130) #19	ENSPEMG00000026245 ##26	ENSPEMG00000027888 ##26	ENSPEMG00000029875 ##26	Ikbkg (ENSPEMG00000031110) #21	ENSPEMG00000017532 #22	Fam3a (ENSPEMG00000004757) #23	Ubl4a (ENSPEMG00000027881) #25	Lage3 (ENSPEMG00000011229) #26	Plxna3 (ENSPEMG00000012781) #27	Fam50a (ENSPEMG00000001727) #28	Gdi1 (ENSPEMG00000010952) #29	Atp6ap1 (ENSPEMG00000009724) #30	Tafazzin (ENSPEMG00000007822) #31	Dnase1l1 (ENSPEMG00000013008) #32	ENSPEMG00000015703 ##33	Emd (ENSPEMG00000012081) #35	Flna (ENSPEMG00000009562) #34	Tktl1 (ENSPEMG00000012644) #36	Tex28 (ENSPEMG00000009005) #37	Opn1mw (ENSPEMG00000010994)
Prairie vole	MODERN SPECIES	168	Rab39b (ENSMOCG00000006994)	Vbp1 (ENSMOCG00000013440)	ENSMOCG00000000841	Cmc4 (ENSMOCG00000019858)	Mtcp1 (ENSMOCG00000002450) #7	Fundc2 (ENSMOCG00000013641) #8	F8 (ENSMOCG00000006178) #9	ENSMOCG00000001114	Smim9 (ENSMOCG00000003619) #12	Mpp1 (ENSMOCG00000000082) #13	ENSMOCG00000001169 #14	Gab3 (ENSMOCG00000015626) #15	Or7r1 (ENSMOCG00000002349) #19	ENSMOCG00000017711 ##26	Ikbkg (ENSMOCG00000011244) #21	ENSMOCG00000015421 #22	Fam3a (ENSMOCG00000016025) #23	Slc10a3 (ENSMOCG00000008789) #24	Ubl4a (ENSMOCG00000000785) #25	ENSMOCG00000002473 #26	Plxna3 (ENSMOCG00000002375) #27	Fam50a (ENSMOCG00000015890) #28	Gdi1 (ENSMOCG00000006575) #29	Atp6ap1 (ENSMOCG00000001026) #30	Tafazzin (ENSMOCG00000010108) #31	Dnase1l1 (ENSMOCG00000017402) #32	ENSMOCG00000013831 #33	Emd (ENSMOCG00000003977) #35	Flna (ENSMOCG00000007826) #34	Tex28 (ENSMOCG00000011491) #37	ENSMOCG00000017630
Murinae	ANCESTRAL SPECIES	14	ENSGT00390000012647.d	ENSGT00940000154783.f #8	ENSGT00940000160294 #9	ENSGT00390000005685 #12	ENSGT00940000158744 #13	ENSGT00510000047092 #14	ENSGT00940000159803 #15	ENSGT00390000001700.a.b.b	ENSGT00390000000062.x.b.l.b	ENSGT00390000000062.x.b.k.b	ENSGT00390000016992 #10	ENSGT01100000263574.b.j	ENSGT01050000244815.B.a.a #19	ENSGT00410000025802.g.b.q.a ##26	ENSGT00530000063808.a #21	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #23	ENSGT00950000182808.b.b #24	ENSGT00730000111022 #25	ENSGT00410000025802.g.a #26	ENSGT01050000244850.A.a #27	ENSGT00390000004735.A #28	ENSGT00950000182994.B.a.a.a #29	ENSGT00940000156650 #30	ENSGT00390000018621 #31	ENSGT00950000182846.a.a.a.a.a #32	ENSGT00390000003897.s.b.a.a.b ##33	ENSGT00390000002034 #35	ENSGT00940000153588.b #34	ENSGT00940000162426 #36	ENSGT00940000162843 #37
Mus	ANCESTRAL SPECIES	9	ENSGT00940000158132	ENSGT00390000018904	ENSGT00390000000360.r.b.a.a	ENSGT00390000006885.a #7	ENSGT00390000012647.d	ENSGT00940000154783.f #8	ENSGT00940000160294 #9	ENSGT00390000005685 #12	ENSGT00940000158744 #13	ENSGT00510000047092 #14	ENSGT00940000159803 #15	ENSGT01100000263574.b.j	ENSGT01050000244815.B.a.a #19	ENSGT00410000025802.g.b.q.a ##26	ENSGT00530000063808.a #21	ENSGT00530000063435.a.o #22	ENSGT00950000183004.a.a.a.b #23	ENSGT00950000182808.b.b #24	ENSGT00730000111022 #25	ENSGT00410000025802.g.a #26	ENSGT01050000244850.A.a #27	ENSGT00390000004735.A #28	ENSGT00950000182994.B.a.a.a #29	ENSGT00940000156650 #30	ENSGT00390000018621 #31	ENSGT00950000182846.a.a.a.a.a #32	ENSGT00390000003897.s.b.a.a.b ##33	ENSGT00390000002034 #35	ENSGT00940000153588.b #34	ENSGT00940000162426 #36	ENSGT00940000162843 #37
Mus_A	ANCESTRAL SPECIES	15	ENSGT00390000006885.a #7	ENSGT00390000012647.d	ENSGT00940000154783.f #8	ENSGT00940000160294 #9	ENSGT00390000005685 #12	ENSGT00940000158744 #13	ENSGT00510000047092 #14	ENSGT00940000159803 #15	ENSGT00390000001700.a.b.b	ENSGT00390000000062.x.b.l.b	ENSGT00390000000062.x.b.k.b	ENSGT01100000263574.b.j	ENSGT01050000244815.B.a.a #19	ENSGT00410000025802.g.b.q.a ##26	ENSGT00530000063808.a #21	ENSGT00530000063435.a.o #22	ENSGT00950000183004.a.a.a.b #23	ENSGT00950000182808.b.b #24	ENSGT00730000111022 #25	ENSGT00410000025802.g.a #26	ENSGT01050000244850.A.a #27	ENSGT00390000004735.A #28	ENSGT00950000182994.B.a.a.a #29	ENSGT00940000156650 #30	ENSGT00390000018621 #31	ENSGT00950000182846.a.a.a.a.a #32	ENSGT00390000003897.s.b.a.a.b ##33	ENSGT00390000002034 #35	ENSGT00940000153588.b #34	ENSGT00940000162426 #36	ENSGT00940000162843 #37
Mus_B	ANCESTRAL SPECIES	14	ENSGT00390000018904	ENSGT00390000000360.r.b.a.a	ENSGT00390000006885.a #7	ENSGT00390000012647.d	ENSGT00940000154783.f #8	ENSGT00940000160294 #9	ENSGT00390000005685 #12	ENSGT00940000158744 #13	ENSGT00510000047092 #14	ENSGT00940000159803 #15	ENSGT00390000001700.a.b.b.o.a	ENSGT01100000263574.b.j	ENSGT01050000244815.B.a.a #19	ENSGT00410000025802.g.b.q.a ##26	ENSGT00530000063808.a #21	ENSGT00530000063435.a.o #22	ENSGT00950000183004.a.a.a.b #23	ENSGT00950000182808.b.b #24	ENSGT00730000111022 #25	ENSGT00410000025802.g.a #26	ENSGT01050000244850.A.a #27	ENSGT00390000004735.A #28	ENSGT00950000182994.B.a.a.a #29	ENSGT00940000156650 #30	ENSGT00390000018621 #31	ENSGT00950000182846.a.a.a.a.a #32	ENSGT00390000003897.s.b.a.b.b #33	ENSGT00390000002034 #35	ENSGT00940000153588.b #34	ENSGT00940000162426 #36	ENSGT00940000162843 #37
Mouse	MODERN SPECIES	37	Brcc3 (ENSMUSG00000031201)	Mtcp1 (ENSMUSG00000031200) #7	Cmc4 (ENSMUSG00000090110)	Fundc2 (ENSMUSG00000031198) #8	F8 (ENSMUSG00000031196) #9	Smim9 (ENSMUSG00000073094) #12	Mpp1 (ENSMUSG00000031402) #13	Dkc1 (ENSMUSG00000031403) #14	Gab3 (ENSMUSG00000032750) #15	Pwwp4d (ENSMUSG00000079531)	Ctag2l2 (ENSMUSG00000079532) ##26	Pwwp4c (ENSMUSG00000079534)	Or13ae2 (ENSMUSG00000051706)	Or7r1 (ENSMUSG00000043715) #19	Ctag2l1 (ENSMUSG00000079536) ##26	G6pdx (ENSMUSG00000031400) #22	Ikbkg (ENSMUSG00000004221) #21	Fam3a (ENSMUSG00000031399) #23	Slc10a3 (ENSMUSG00000032806) #24	Ubl4a (ENSMUSG00000015290) #25	Lage3 (ENSMUSG00000015289) #26	Plxna3 (ENSMUSG00000031398) #27	Fam50a (ENSMUSG00000001962) #28	Gdi1 (ENSMUSG00000015291) #29	Atp6ap1 (ENSMUSG00000019087) #30	Tafazzin (ENSMUSG00000009995) #31	Dnase1l1 (ENSMUSG00000019088) #32	Rpl10 (ENSMUSG00000008682) ##33	Emd (ENSMUSG00000001964) #35	Flna (ENSMUSG00000031328) #34	Tktl1 (ENSMUSG00000031397) #36
Mus_C	ANCESTRAL SPECIES	27	ENSGT00950000183097.a.a.a	ENSGT00940000158132	ENSGT00390000018904	ENSGT00390000000360.r.b.a.a	ENSGT00390000006885.a #7	ENSGT00390000012647.d	ENSGT00940000154783.f #8	ENSGT00940000160294 #9	ENSGT00390000005685 #12	ENSGT00940000158744 #13	ENSGT00510000047092 #14	ENSGT01100000263574.b.j	ENSGT01050000244815.B.a.a #19	ENSGT00410000025802.g.b.q.a ##26	ENSGT00530000063808.a #21	ENSGT00530000063435.a.o #22	ENSGT00950000183004.a.a.a.b #23	ENSGT00950000182808.b.b #24	ENSGT00730000111022 #25	ENSGT00410000025802.g.a #26	ENSGT01050000244850.A.a #27	ENSGT00390000004735.A #28	ENSGT00950000182994.B.a.a.a #29	ENSGT00940000156650 #30	ENSGT00390000018621 #31	ENSGT00950000182846.a.a.a.a.a #32	ENSGT00390000003897.s.b.a.b.b #33	ENSGT00390000002034 #35	ENSGT00940000153588.b #34	ENSGT00940000162426 #36	ENSGT00940000162843 #37
Steppe mouse	MODERN SPECIES	1616															Ikbkg (ENSMSIG00000001456) #21	G6pdx (ENSMSIG00000001388) #22
spretus	MODERN SPECIES	19	Rab39b (MGP_SPRETEiJ_G0034360)	Vbp1 (MGP_SPRETEiJ_G0034359)	Brcc3 (MGP_SPRETEiJ_G0034358)	Mtcp1 (MGP_SPRETEiJ_G0034357) #7	Cmc4 (MGP_SPRETEiJ_G0034356)	Fundc2 (MGP_SPRETEiJ_G0034355) #8	F8 (MGP_SPRETEiJ_G0034354) #9	Smim9 (MGP_SPRETEiJ_G0034353) #12	Mpp1 (MGP_SPRETEiJ_G0034352) #13	Dkc1 (MGP_SPRETEiJ_G0034351) #14	MGP_SPRETEiJ_G0034348 ##26	MGP_SPRETEiJ_G0034347	Or13ae2 (MGP_SPRETEiJ_G0034346)	Or7r1 (MGP_SPRETEiJ_G0034345) #19	MGP_SPRETEiJ_G0034344 ##26	G6pdx (MGP_SPRETEiJ_G0034343) #22	Ikbkg (MGP_SPRETEiJ_G0034342) #21	Fam3a (MGP_SPRETEiJ_G0034341) #23	Slc10a3 (MGP_SPRETEiJ_G0034340) #24	Ubl4a (MGP_SPRETEiJ_G0034339) #25	Lage3 (MGP_SPRETEiJ_G0034338) #26	Plxna3 (MGP_SPRETEiJ_G0034337) #27	Fam50a (MGP_SPRETEiJ_G0034336) #28	Gdi1 (MGP_SPRETEiJ_G0034335) #29	Atp6ap1 (MGP_SPRETEiJ_G0034334) #30	Tafazzin (MGP_SPRETEiJ_G0034333) #31	Dnase1l1 (MGP_SPRETEiJ_G0034332) #32	MGP_SPRETEiJ_G0034331 #33	Emd (MGP_SPRETEiJ_G0034330) #35	Flna (MGP_SPRETEiJ_G0034329) #34	Tktl1 (MGP_SPRETEiJ_G0034328) #36
Ryukyu mouse	MODERN SPECIES	19	Prkx (MGP_CAROLIEiJ_G0033203)	Tbl1x (MGP_CAROLIEiJ_G0033202)	Cldn34d (MGP_CAROLIEiJ_G0033201)	Cldn34b4 (MGP_CAROLIEiJ_G0033200)	Pls3 (MGP_CAROLIEiJ_G0033199)	MGP_CAROLIEiJ_G0033198	Mtcp1 (MGP_CAROLIEiJ_G0033197) #7	Cmc4 (MGP_CAROLIEiJ_G0033196)	Fundc2 (MGP_CAROLIEiJ_G0033195) #8	F8 (MGP_CAROLIEiJ_G0033194) #9	Smim9 (MGP_CAROLIEiJ_G0033193) #12	Mpp1 (MGP_CAROLIEiJ_G0033192) #13	Dkc1 (MGP_CAROLIEiJ_G0033191) #14	Or13ae2 (MGP_CAROLIEiJ_G0033190)	Or7r1 (MGP_CAROLIEiJ_G0033189) #19	G6pdx (MGP_CAROLIEiJ_G0033188) #22	Ikbkg (MGP_CAROLIEiJ_G0033187) #21	Fam3a (MGP_CAROLIEiJ_G0033186) #23	Slc10a3 (MGP_CAROLIEiJ_G0033185) #24	Ubl4a (MGP_CAROLIEiJ_G0033184) #25	Lage3 (MGP_CAROLIEiJ_G0033183) #26	Plxna3 (MGP_CAROLIEiJ_G0033182) #27	Fam50a (MGP_CAROLIEiJ_G0033181) #28	Gdi1 (MGP_CAROLIEiJ_G0033180) #29	Atp6ap1 (MGP_CAROLIEiJ_G0033179) #30	Tafazzin (MGP_CAROLIEiJ_G0033178) #31	Dnase1l1 (MGP_CAROLIEiJ_G0033177) #32	MGP_CAROLIEiJ_G0033176 ##33	Emd (MGP_CAROLIEiJ_G0033175) #35	Flna (MGP_CAROLIEiJ_G0033174) #34	Tktl1 (MGP_CAROLIEiJ_G0033173) #36
Shrew mouse	MODERN SPECIES	23	Tbl1x (MGP_PahariEiJ_G0031746)	Cldn34d (MGP_PahariEiJ_G0031745)	Cldn34b4 (MGP_PahariEiJ_G0031744)	Pls3 (MGP_PahariEiJ_G0031743)	Brcc3 (MGP_PahariEiJ_G0031742)	Mtcp1 (MGP_PahariEiJ_G0031741) #7	Cmc4 (MGP_PahariEiJ_G0031740)	Fundc2 (MGP_PahariEiJ_G0031739) #8	F8 (MGP_PahariEiJ_G0031738) #9	Smim9 (MGP_PahariEiJ_G0031737) #12	Mpp1 (MGP_PahariEiJ_G0031736) #13	Dkc1 (MGP_PahariEiJ_G0031735) #14	Gab3 (MGP_PahariEiJ_G0031734) #15	Or13ae2 (MGP_PahariEiJ_G0031733)	Or7r1 (MGP_PahariEiJ_G0031732) #19	G6pdx (MGP_PahariEiJ_G0031731) #22	Ikbkg (MGP_PahariEiJ_G0031730) #21	Fam3a (MGP_PahariEiJ_G0031729) #23	Slc10a3 (MGP_PahariEiJ_G0031728) #24	Ubl4a (MGP_PahariEiJ_G0031727) #25	Lage3 (MGP_PahariEiJ_G0031726) #26	Plxna3 (MGP_PahariEiJ_G0031725) #27	Fam50a (MGP_PahariEiJ_G0031724) #28	Gdi1 (MGP_PahariEiJ_G0031723) #29	Atp6ap1 (MGP_PahariEiJ_G0031722) #30	Tafazzin (MGP_PahariEiJ_G0031721) #31	Dnase1l1 (MGP_PahariEiJ_G0031720) #32	MGP_PahariEiJ_G0031719 ##33	Emd (MGP_PahariEiJ_G0031718) #35	Flna (MGP_PahariEiJ_G0031717) #34	MGP_PahariEiJ_G0031716 #36
Mus	ANCESTRAL SPECIES	14	ENSGT00940000162224	ENSGT00390000015958	ENSGT00940000157294	ENSGT00390000007332	ENSGT00390000010434.a	ENSGT00390000012556	ENSGT00390000004612	ENSGT00950000183177.a.a.b	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221	ENSGT00530000063435.a.p #22	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b	ENSGT00390000017929	ENSGT00940000155358	ENSGT00590000083165	ENSGT00730000111066
Mus_A	ANCESTRAL SPECIES	6	ENSGT00940000162224	ENSGT00390000015958	ENSGT00940000157294	ENSGT00390000007332	ENSGT00390000010434.a	ENSGT00390000012556	ENSGT00390000004612	ENSGT00950000183177.a.a.b	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221	ENSGT00530000063435.a.p #22	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b	ENSGT00390000017929	ENSGT00940000155358	ENSGT00590000083165	ENSGT00730000111066
Mus_B	ANCESTRAL SPECIES	4	ENSGT00940000162224	ENSGT00390000015958	ENSGT00940000157294	ENSGT00390000007332	ENSGT00390000010434.a	ENSGT00390000012556	ENSGT00390000004612	ENSGT00950000183177.a.a.b	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221	ENSGT00530000063435.a.p #22	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b	ENSGT00390000017929	ENSGT00940000155358	ENSGT00590000083165	ENSGT00730000111066
Mus_C	ANCESTRAL SPECIES	4	ENSGT00940000162224	ENSGT00390000015958	ENSGT00940000157294	ENSGT00390000007332	ENSGT00390000010434.a	ENSGT00390000012556	ENSGT00390000004612	ENSGT00950000183177.a.a.b	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221	ENSGT00530000063435.a.p #22	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b	ENSGT00390000017929	ENSGT00940000155358	ENSGT00590000083165	ENSGT00730000111066
spretus	MODERN SPECIES	14	Sod3 (MGP_SPRETEiJ_G0028210)	Ccdc149 (MGP_SPRETEiJ_G0028211)	Lgi2 (MGP_SPRETEiJ_G0028212)	Sepsecs (MGP_SPRETEiJ_G0028213)	Pi4k2b (MGP_SPRETEiJ_G0028214)	Zcchc4 (MGP_SPRETEiJ_G0028215)	Anapc4 (MGP_SPRETEiJ_G0028216)	Slc34a2 (MGP_SPRETEiJ_G0028217)	Sel1l3 (MGP_SPRETEiJ_G0028218)	Smim20 (MGP_SPRETEiJ_G0028219)	MGP_SPRETEiJ_G0028220	Cckar (MGP_SPRETEiJ_G0028221)	Tbc1d19 (MGP_SPRETEiJ_G0028222)	Stim2 (MGP_SPRETEiJ_G0028223)	Pcdh7 (MGP_SPRETEiJ_G0028224)	G6pd2 (MGP_SPRETEiJ_G0028225) #22	Arap2 (MGP_SPRETEiJ_G0028226)	Dthd1 (MGP_SPRETEiJ_G0028227)	Nwd2 (MGP_SPRETEiJ_G0028228)	0610040J01Rik (MGP_SPRETEiJ_G0028229)	Rell1 (MGP_SPRETEiJ_G0028230)	Pgm2 (MGP_SPRETEiJ_G0028231)	Tbc1d1 (MGP_SPRETEiJ_G0028232)	Klf3 (MGP_SPRETEiJ_G0028233)	Tlr6 (MGP_SPRETEiJ_G0028235)	Fam114a1 (MGP_SPRETEiJ_G0028236)	MGP_SPRETEiJ_G0028237	Klhl5 (MGP_SPRETEiJ_G0028238)	Wdr19 (MGP_SPRETEiJ_G0028239)	Rfc1 (MGP_SPRETEiJ_G0028240)	Klb (MGP_SPRETEiJ_G0028241)
Steppe mouse	MODERN SPECIES	2833																G6pd2 (ENSMSIG00000027190) #22
Mouse	MODERN SPECIES	14	Sod3 (ENSMUSG00000072941)	Ccdc149 (ENSMUSG00000045790)	Lgi2 (ENSMUSG00000039252)	Sepsecs (ENSMUSG00000029173)	Pi4k2b (ENSMUSG00000029186)	Zcchc4 (ENSMUSG00000029179)	Anapc4 (ENSMUSG00000029176)	Slc34a2 (ENSMUSG00000029188)	Sel1l3 (ENSMUSG00000029189)	Smim20 (ENSMUSG00000061461)	Rbpj (ENSMUSG00000039191)	Cckar (ENSMUSG00000029193)	Tbc1d19 (ENSMUSG00000039178)	Stim2 (ENSMUSG00000039156)	Pcdh7 (ENSMUSG00000029108)	G6pd2 (ENSMUSG00000089992) #22	Arap2 (ENSMUSG00000037999)	Dthd1 (ENSMUSG00000090326)	Nwd2 (ENSMUSG00000090061)	0610040J01Rik (ENSMUSG00000060512)	Rell1 (ENSMUSG00000047881)	Pgm2 (ENSMUSG00000029171)	Tbc1d1 (ENSMUSG00000029174)	Klf3 (ENSMUSG00000029178)	Tlr1 (ENSMUSG00000044827)	Tlr6 (ENSMUSG00000051498)	Fam114a1 (ENSMUSG00000029185)	Tmem156 (ENSMUSG00000037913)	Klhl5 (ENSMUSG00000054920)	Wdr19 (ENSMUSG00000037890)	Rfc1 (ENSMUSG00000029191)
Ryukyu mouse	MODERN SPECIES	14	Sod3 (MGP_CAROLIEiJ_G0027215)	Ccdc149 (MGP_CAROLIEiJ_G0027216)	Lgi2 (MGP_CAROLIEiJ_G0027217)	Sepsecs (MGP_CAROLIEiJ_G0027218)	Pi4k2b (MGP_CAROLIEiJ_G0027219)	Zcchc4 (MGP_CAROLIEiJ_G0027220)	Anapc4 (MGP_CAROLIEiJ_G0027221)	Slc34a2 (MGP_CAROLIEiJ_G0027222)	Sel1l3 (MGP_CAROLIEiJ_G0027223)	Smim20 (MGP_CAROLIEiJ_G0027224)	MGP_CAROLIEiJ_G0027225	Cckar (MGP_CAROLIEiJ_G0027226)	Tbc1d19 (MGP_CAROLIEiJ_G0027227)	Stim2 (MGP_CAROLIEiJ_G0027228)	Pcdh7 (MGP_CAROLIEiJ_G0027229)	G6pd2 (MGP_CAROLIEiJ_G0027230) #22	Arap2 (MGP_CAROLIEiJ_G0027231)	Dthd1 (MGP_CAROLIEiJ_G0027232)	Nwd2 (MGP_CAROLIEiJ_G0027233)	0610040J01Rik (MGP_CAROLIEiJ_G0027234)	Rell1 (MGP_CAROLIEiJ_G0027235)	Pgm2 (MGP_CAROLIEiJ_G0027236)	MGP_CAROLIEiJ_G0027237	Klf3 (MGP_CAROLIEiJ_G0027238)	Tlr1 (MGP_CAROLIEiJ_G0027239)	Tlr6 (MGP_CAROLIEiJ_G0027240)	Fam114a1 (MGP_CAROLIEiJ_G0027241)	MGP_CAROLIEiJ_G0027242	Klhl5 (MGP_CAROLIEiJ_G0027243)	Wdr19 (MGP_CAROLIEiJ_G0027244)	Rfc1 (MGP_CAROLIEiJ_G0027245)
Shrew mouse	MODERN SPECIES	4	Sod3 (MGP_PahariEiJ_G0016997)	Ccdc149 (MGP_PahariEiJ_G0016998)	Lgi2 (MGP_PahariEiJ_G0016999)	Sepsecs (MGP_PahariEiJ_G0017000)	Pi4k2b (MGP_PahariEiJ_G0017001)	Zcchc4 (MGP_PahariEiJ_G0017002)	Anapc4 (MGP_PahariEiJ_G0017003)	Slc34a2 (MGP_PahariEiJ_G0017004)	Sel1l3 (MGP_PahariEiJ_G0017005)	Smim20 (MGP_PahariEiJ_G0017006)	Rbpj (MGP_PahariEiJ_G0017007)	Cckar (MGP_PahariEiJ_G0017008)	Tbc1d19 (MGP_PahariEiJ_G0017009)	Stim2 (MGP_PahariEiJ_G0017010)	Pcdh7 (MGP_PahariEiJ_G0017011)	G6pd2 (MGP_PahariEiJ_G0017012) #22	Arap2 (MGP_PahariEiJ_G0017013)	Dthd1 (MGP_PahariEiJ_G0017014)	Nwd2 (MGP_PahariEiJ_G0017015)	0610040J01Rik (MGP_PahariEiJ_G0017016)	Rell1 (MGP_PahariEiJ_G0017017)	Pgm2 (MGP_PahariEiJ_G0017018)	Tbc1d1 (MGP_PahariEiJ_G0017019)	Klf3 (MGP_PahariEiJ_G0017020)	Tlr1 (MGP_PahariEiJ_G0017021)	Tlr6 (MGP_PahariEiJ_G0017022)	Fam114a1 (MGP_PahariEiJ_G0017023)	MGP_PahariEiJ_G0017024	Klhl5 (MGP_PahariEiJ_G0017025)	Wdr19 (MGP_PahariEiJ_G0017026)	Rfc1 (MGP_PahariEiJ_G0017027)
Rat	MODERN SPECIES	46											ENSRNOG00000067246	LOC120099253 (ENSRNOG00000061511) ##26	Or7r1 (ENSRNOG00000058820) #19	LOC690348 (ENSRNOG00000060839) ##26	Ikbkg (ENSRNOG00000060936) #21	G6pd (ENSRNOG00000056728) #22	Fam3a (ENSRNOG00000060623) #23	Ubl4a (ENSRNOG00000053061) #25	Slc10a3 (ENSRNOG00000060580) #24	Lage3 (ENSRNOG00000053456)	Plxna3 (ENSRNOG00000060464) #27	Fam50a (ENSRNOG00000058439) #28	Gdi1 (ENSRNOG00000056870) #29	Atp6ap1 (ENSRNOG00000054352) #30	Tafazzin (ENSRNOG00000053023) #31	ENSRNOG00000063225	Dnase1l1 (ENSRNOG00000055641) #32	Rpl10 (ENSRNOG00000056765) #33	Emd (ENSRNOG00000058882) #35	Flna (ENSRNOG00000054890) #34	Tktl1 (ENSRNOG00000055557) #36
Upper Galilee mountains blind mole rat	MODERN SPECIES	660													Or13ae2 (ENSNGAG00000001537)	ENSNGAG00000024034 ##26	Ikbkg (ENSNGAG00000019535) #21	ENSNGAG00000020668 #22	Fam3a (ENSNGAG00000016683) #23	Slc10a3 (ENSNGAG00000007975) #24	Ubl4a (ENSNGAG00000023782) #25	Lage3 (ENSNGAG00000023293) #26	Plxna3 (ENSNGAG00000022548) #27	ENSNGAG00000012608	Fam50a (ENSNGAG00000021495) #28	Gdi1 (ENSNGAG00000023333) #29	Atp6ap1 (ENSNGAG00000021512) #30	Tafazzin (ENSNGAG00000008680) #31	Dnase1l1 (ENSNGAG00000024155) #32	ENSNGAG00000023746 #33	Emd (ENSNGAG00000018770) #35	Flna (ENSNGAG00000013524) #34	Tex28 (ENSNGAG00000023701) #37
Lesser Egyptian jerboa	MODERN SPECIES	224															Ikbkg (ENSJJAG00000023964) #21	ENSJJAG00000023806 #22	Fam3a (ENSJJAG00000023156) #23	Slc10a3 (ENSJJAG00000022929) #24	ENSJJAG00000022788 #25	Lage3 (ENSJJAG00000022478) #26	Plxna3 (ENSJJAG00000020257) #27	Fam50a (ENSJJAG00000010389) #28	Gdi1 (ENSJJAG00000008815) #29	ENSJJAG00000019557 #30	Tafazzin (ENSJJAG00000015233) #31	ENSJJAG00000014235 ##33	Emd (ENSJJAG00000019656) #35	Flna (ENSJJAG00000015450) #34	Tktl1 (ENSJJAG00000010328) #36	Tex28 (ENSJJAG00000019769) #37	Opn1mw (ENSJJAG00000022699)
Kangaroo rat	MODERN SPECIES	526	F8a (ENSDORG00000028723) #10	Rab39b (ENSDORG00000029496)	ENSDORG00000004628	ENSDORG00000013161	ENSDORG00000029487	Mtcp1 (ENSDORG00000013159) #7	Fundc2 (ENSDORG00000013156) #8	ENSDORG00000028874	F8 (ENSDORG00000013155) #9	ENSDORG00000024019	Mpp1 (ENSDORG00000013568) #13	ENSDORG00000013566 #14	Gab3 (ENSDORG00000006809) #15	ENSDORG00000000625 ##26	Ikbkg (ENSDORG00000028140) #21	ENSDORG00000012731 #22	Fam3a (ENSDORG00000025173) #23	Slc10a3 (ENSDORG00000005197) #24	Ubl4a (ENSDORG00000005196) #25	Lage3 (ENSDORG00000029875) #26	Plxna3 (ENSDORG00000000853) #27	Fam50a (ENSDORG00000008851) #28	Gdi1 (ENSDORG00000008848) #29	Atp6ap1 (ENSDORG00000008847) #30	Tafazzin (ENSDORG00000029677) #31	ENSDORG00000004369 #33	Flna (ENSDORG00000004370) #34	Emd (ENSDORG00000004375) #35	Tktl1 (ENSDORG00000013785) #36	Tex28 (ENSDORG00000010136) #37	Opn1mw (ENSDORG00000026454)
Lagomorpha	ANCESTRAL SPECIES	103															ENSGT00530000063808.a #21	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #23	ENSGT00950000182808.b.b #24	ENSGT00410000025802.g.a #26	ENSGT01050000244850.A.a #27	ENSGT00390000004735.A #28	ENSGT00950000182994.B.a.a.a #29	ENSGT00940000156650 #30	ENSGT00390000018621 #31	ENSGT00390000002034 #35	ENSGT00940000153588.b #34	ENSGT00940000162426 #36	ENSGT00940000162843 #37	ENSGT01030000234549.a.a.a.b	ENSGT00530000063687.b.b.b	ENSGT00940000160502
Rabbit	MODERN SPECIES	549															IKBKG (ENSOCUG00000007873) #21	G6PD (ENSOCUG00000007866) #22	FAM3A (ENSOCUG00000015663) #23	SLC10A3 (ENSOCUG00000022433) #24	LAGE3 (ENSOCUG00000028990) #26	PLXNA3 (ENSOCUG00000015623) #27	FAM50A (ENSOCUG00000017644) #28	GDI1 (ENSOCUG00000017639) #29	ENSOCUG00000017631 #30	TAFAZZIN (ENSOCUG00000000885) #31	RA_m006_jsm7BED4f (ENSOCUG00000024511) #34	EMD (ENSOCUG00000000882) #35	FLNA (ENSOCUG00000000880) #34	TKTL1 (ENSOCUG00000000883) #36	TEX28 (ENSOCUG00000021000) #37	OPN1MW (ENSOCUG00000011466)	MECP2 (ENSOCUG00000013147)
Pika	MODERN SPECIES	2591																ENSOPRG00000001213 #22
Tree shrew	MODERN SPECIES	3679																G6PD (ENSTBEG00000016360) #22	FAM3A (ENSTBEG00000016091) #23