Mus	DUPLICATION
Mus	ANCESTRAL SPECIES	9	ENSGT00940000158132	ENSGT00390000018904	ENSGT00390000000360.r.b.a.a ##12	ENSGT00390000006885.a #13	ENSGT00390000012647.d #14	ENSGT00940000154783.f #15	ENSGT00940000160294 #16	ENSGT00390000005685 #17	ENSGT00940000158744 #18	ENSGT00510000047092 #19	ENSGT00940000159803	ENSGT01100000263574.b.j #20	ENSGT01050000244815.B.a.a #21	ENSGT00410000025802.g.b.q.a ##27	ENSGT00530000063808.a #23	ENSGT00530000063435.a.o #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.a.b #34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Mus_A	ANCESTRAL SPECIES	15	ENSGT00390000006885.a #13	ENSGT00390000012647.d #14	ENSGT00940000154783.f #15	ENSGT00940000160294 #16	ENSGT00390000005685 #17	ENSGT00940000158744 #18	ENSGT00510000047092 #19	ENSGT00940000159803	ENSGT00390000001700.a.b.b	ENSGT00390000000062.x.b.l.b	ENSGT00390000000062.x.b.k.b	ENSGT01100000263574.b.j #20	ENSGT01050000244815.B.a.a #21	ENSGT00410000025802.g.b.q.a ##27	ENSGT00530000063808.a #23	ENSGT00530000063435.a.o #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.a.b #34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Ryukyu mouse	MODERN SPECIES	19	Prkx (MGP_CAROLIEiJ_G0033203) #7	Tbl1x (MGP_CAROLIEiJ_G0033202) #8	Cldn34d (MGP_CAROLIEiJ_G0033201) #9	Cldn34b4 (MGP_CAROLIEiJ_G0033200) #10	Pls3 (MGP_CAROLIEiJ_G0033199) #11	MGP_CAROLIEiJ_G0033198 #12	Mtcp1 (MGP_CAROLIEiJ_G0033197) #13	Cmc4 (MGP_CAROLIEiJ_G0033196) #14	Fundc2 (MGP_CAROLIEiJ_G0033195) #15	F8 (MGP_CAROLIEiJ_G0033194) #16	Smim9 (MGP_CAROLIEiJ_G0033193) #17	Mpp1 (MGP_CAROLIEiJ_G0033192) #18	Dkc1 (MGP_CAROLIEiJ_G0033191) #19	Or13ae2 (MGP_CAROLIEiJ_G0033190) #20	Or7r1 (MGP_CAROLIEiJ_G0033189) #21	G6pdx (MGP_CAROLIEiJ_G0033188) #22	Ikbkg (MGP_CAROLIEiJ_G0033187) #23	Fam3a (MGP_CAROLIEiJ_G0033186) #24	Slc10a3 (MGP_CAROLIEiJ_G0033185) #25	Ubl4a (MGP_CAROLIEiJ_G0033184) #26	Lage3 (MGP_CAROLIEiJ_G0033183) #27	Plxna3 (MGP_CAROLIEiJ_G0033182) #28	Fam50a (MGP_CAROLIEiJ_G0033181) #29	Gdi1 (MGP_CAROLIEiJ_G0033180) #30	Atp6ap1 (MGP_CAROLIEiJ_G0033179) #31	Tafazzin (MGP_CAROLIEiJ_G0033178) #32	Dnase1l1 (MGP_CAROLIEiJ_G0033177) #33	MGP_CAROLIEiJ_G0033176 #34	Emd (MGP_CAROLIEiJ_G0033175) #35	Flna (MGP_CAROLIEiJ_G0033174) #36	Tktl1 (MGP_CAROLIEiJ_G0033173) #37
Mus_B	ANCESTRAL SPECIES	14	ENSGT00390000018904	ENSGT00390000000360.r.b.a.a ##12	ENSGT00390000006885.a #13	ENSGT00390000012647.d #14	ENSGT00940000154783.f #15	ENSGT00940000160294 #16	ENSGT00390000005685 #17	ENSGT00940000158744 #18	ENSGT00510000047092 #19	ENSGT00940000159803	ENSGT00390000001700.a.b.b.o.a	ENSGT01100000263574.b.j #20	ENSGT01050000244815.B.a.a #21	ENSGT00410000025802.g.b.q.a ##27	ENSGT00530000063808.a #23	ENSGT00530000063435.a.o #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b ##34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Mus_C	ANCESTRAL SPECIES	27	ENSGT00950000183097.a.a.a #11	ENSGT00940000158132	ENSGT00390000018904	ENSGT00390000000360.r.b.a.a ##12	ENSGT00390000006885.a #13	ENSGT00390000012647.d #14	ENSGT00940000154783.f #15	ENSGT00940000160294 #16	ENSGT00390000005685 #17	ENSGT00940000158744 #18	ENSGT00510000047092 #19	ENSGT01100000263574.b.j #20	ENSGT01050000244815.B.a.a #21	ENSGT00410000025802.g.b.q.a ##27	ENSGT00530000063808.a #23	ENSGT00530000063435.a.o #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b ##34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Mus	ANCESTRAL SPECIES	14	ENSGT00940000162224	ENSGT00390000015958	ENSGT00940000157294	ENSGT00390000007332	ENSGT00390000010434.a	ENSGT00390000012556	ENSGT00390000004612	ENSGT00950000183177.a.a.b	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221	ENSGT00530000063435.a.p ##22	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b	ENSGT00390000017929	ENSGT00940000155358	ENSGT00590000083165	ENSGT00730000111066
Mus_A	ANCESTRAL SPECIES	6	ENSGT00940000162224	ENSGT00390000015958	ENSGT00940000157294	ENSGT00390000007332	ENSGT00390000010434.a	ENSGT00390000012556	ENSGT00390000004612	ENSGT00950000183177.a.a.b	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221	ENSGT00530000063435.a.p ##22	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b	ENSGT00390000017929	ENSGT00940000155358	ENSGT00590000083165	ENSGT00730000111066
Mus_B	ANCESTRAL SPECIES	4	ENSGT00940000162224	ENSGT00390000015958	ENSGT00940000157294	ENSGT00390000007332	ENSGT00390000010434.a	ENSGT00390000012556	ENSGT00390000004612	ENSGT00950000183177.a.a.b	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221	ENSGT00530000063435.a.p ##22	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b	ENSGT00390000017929	ENSGT00940000155358	ENSGT00590000083165	ENSGT00730000111066
Mus_C	ANCESTRAL SPECIES	4	ENSGT00940000162224	ENSGT00390000015958	ENSGT00940000157294	ENSGT00390000007332	ENSGT00390000010434.a	ENSGT00390000012556	ENSGT00390000004612	ENSGT00950000183177.a.a.b	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221	ENSGT00530000063435.a.p ##22	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b	ENSGT00390000017929	ENSGT00940000155358	ENSGT00590000083165	ENSGT00730000111066