Glires ANCESTRAL SPECIES 10 ENSGT00390000006885.a #13 ENSGT00390000012647.d #14 ENSGT00940000154783.f #15 ENSGT00390000016992 ENSGT00940000163020 ENSGT00940000160294 #16 ENSGT00390000005685 #17 ENSGT00940000158744 #18 ENSGT00510000047092 #19 ENSGT00940000159803 ENSGT00390000001700.a.b.b ENSGT00390000000062.x.b ENSGT01050000244815.B.a.a #21 ENSGT00410000025802.g.b ##27 ENSGT00530000063808.a #23 ENSGT00530000063435.a #22 ENSGT00950000183004.a.a.a.b #24 ENSGT00950000182808.b.b #25 ENSGT00730000111022 #26 ENSGT00410000025802.g.a #27 ENSGT01050000244850.A.a #28 ENSGT00390000004735.A #29 ENSGT00950000182994.B.a.a.a #30 ENSGT00940000156650 #31 ENSGT00390000018621 #32 ENSGT00950000182846.a.a.a.a.a #33 ENSGT00390000003897.s.b.a.b.b ##34 ENSGT00390000002034 #35 ENSGT00940000153588.b #36 ENSGT00940000162426 #37 ENSGT00940000162843 Rodentia ANCESTRAL SPECIES 10 ENSGT00390000006885.a #13 ENSGT00390000012647.d #14 ENSGT00940000154783.f #15 ENSGT00390000016992 ENSGT00940000163020 ENSGT00940000160294 #16 ENSGT00390000005685 #17 ENSGT00940000158744 #18 ENSGT00510000047092 #19 ENSGT00940000159803 ENSGT00390000001700.a.b.b ENSGT00390000000062.x.b ENSGT01050000244815.B.a.a #21 ENSGT00410000025802.g.b ##27 ENSGT00530000063808.a #23 ENSGT00530000063435.a #22 ENSGT00950000183004.a.a.a.b #24 ENSGT00950000182808.b.b #25 ENSGT00730000111022 #26 ENSGT00410000025802.g.a #27 ENSGT01050000244850.A.a #28 ENSGT00390000004735.A #29 ENSGT00950000182994.B.a.a.a #30 ENSGT00940000156650 #31 ENSGT00390000018621 #32 ENSGT00950000182846.a.a.a.a.a #33 ENSGT00390000003897.s.b.a.b.b ##34 ENSGT00390000002034 #35 ENSGT00940000153588.b #36 ENSGT00940000162426 #37 ENSGT00940000162843 Rodentia_B ANCESTRAL SPECIES 16 ENSGT00940000158132 ENSGT00390000018904 ENSGT00390000000360.r.b ##12 ENSGT00390000006885.a #13 ENSGT00390000012647.d #14 ENSGT00940000154783.f #15 ENSGT00940000160294 #16 ENSGT00390000005685 #17 ENSGT00940000158744 #18 ENSGT00510000047092 #19 ENSGT00940000159803 ENSGT01100000263574.b.j #20 ENSGT01050000244815.B.a.a #21 ENSGT00410000025802.g.b ##27 ENSGT00530000063808.a #23 ENSGT00530000063435.a #22 ENSGT00950000183004.a.a.a.b #24 ENSGT00950000182808.b.b #25 ENSGT00730000111022 #26 ENSGT00410000025802.g.a #27 ENSGT01050000244850.A.a #28 ENSGT00390000004735.A #29 ENSGT00950000182994.B.a.a.a #30 ENSGT00940000156650 #31 ENSGT00390000018621 #32 ENSGT00950000182846.a.a.a.a.a #33 ENSGT00390000003897.s.b.a.b.b ##34 ENSGT00390000002034 #35 ENSGT00940000153588.b #36 ENSGT00940000162426 #37 ENSGT00940000162843 Myomorpha ANCESTRAL SPECIES 6 ENSGT00940000158132 ENSGT00390000018904 ENSGT00390000000360.r.b ##12 ENSGT00390000006885.a #13 ENSGT00390000012647.d #14 ENSGT00940000154783.f #15 ENSGT00940000160294 #16 ENSGT00390000005685 #17 ENSGT00940000158744 #18 ENSGT00510000047092 #19 ENSGT00940000159803 ENSGT01100000263574.b.j #20 ENSGT01050000244815.B.a.a #21 ENSGT00410000025802.g.b ##27 ENSGT00530000063808.a #23 ENSGT00530000063435.a #22 ENSGT00950000183004.a.a.a.b #24 ENSGT00950000182808.b.b #25 ENSGT00730000111022 #26 ENSGT00410000025802.g.a #27 ENSGT01050000244850.A.a #28 ENSGT00390000004735.A #29 ENSGT00950000182994.B.a.a.a #30 ENSGT00940000156650 #31 ENSGT00390000018621 #32 ENSGT00950000182846.a.a.a.a.a #33 ENSGT00390000003897.s.b.a.b.b ##34 ENSGT00390000002034 #35 ENSGT00940000153588.b #36 ENSGT00940000162426 #37 ENSGT00940000162843 Muroidea ANCESTRAL SPECIES 13 ENSGT00940000158132 ENSGT00390000018904 ENSGT00390000000360.r.b ##12 ENSGT00390000006885.a #13 ENSGT00390000012647.d #14 ENSGT00940000154783.f #15 ENSGT00940000160294 #16 ENSGT00390000005685 #17 ENSGT00940000158744 #18 ENSGT00510000047092 #19 ENSGT00940000159803 ENSGT01100000263574.b.j #20 ENSGT01050000244815.B.a.a #21 ENSGT00410000025802.g.b ##27 ENSGT00530000063808.a #23 ENSGT00530000063435.a #22 ENSGT00950000183004.a.a.a.b #24 ENSGT00950000182808.b.b #25 ENSGT00730000111022 #26 ENSGT00410000025802.g.a #27 ENSGT01050000244850.A.a #28 ENSGT00390000004735.A #29 ENSGT00950000182994.B.a.a.a #30 ENSGT00940000156650 #31 ENSGT00390000018621 #32 ENSGT00950000182846.a.a.a.a.a #33 ENSGT00390000003897.s.b.a.b.b ##34 ENSGT00390000002034 #35 ENSGT00940000153588.b #36 ENSGT00940000162426 #37 ENSGT00940000162843 Muroidea_A ANCESTRAL SPECIES 7 ENSGT00940000158132 ENSGT00390000018904 ENSGT00390000000360.r.b.a.a ##12 ENSGT00390000006885.a #13 ENSGT00390000012647.d #14 ENSGT00940000154783.f #15 ENSGT00940000160294 #16 ENSGT00390000005685 #17 ENSGT00940000158744 #18 ENSGT00510000047092 #19 ENSGT00940000159803 ENSGT01100000263574.b.j #20 ENSGT01050000244815.B.a.a #21 ENSGT00410000025802.g.b.q.a ##27 ENSGT00530000063808.a #23 ENSGT00530000063435.a #22 ENSGT00950000183004.a.a.a.b #24 ENSGT00950000182808.b.b #25 ENSGT00730000111022 #26 ENSGT00410000025802.g.a #27 ENSGT01050000244850.A.a #28 ENSGT00390000004735.A #29 ENSGT00950000182994.B.a.a.a #30 ENSGT00940000156650 #31 ENSGT00390000018621 #32 ENSGT00950000182846.a.a.a.a.a #33 ENSGT00390000003897.s.b.a.b.b ##34 ENSGT00390000002034 #35 ENSGT00940000153588.b #36 ENSGT00940000162426 #37 ENSGT00940000162843 Murinae ANCESTRAL SPECIES 14 ENSGT00390000012647.d #14 ENSGT00940000154783.f #15 ENSGT00940000160294 #16 ENSGT00390000005685 #17 ENSGT00940000158744 #18 ENSGT00510000047092 #19 ENSGT00940000159803 ENSGT00390000001700.a.b.b ENSGT00390000000062.x.b.l.b ENSGT00390000000062.x.b.k.b ENSGT00390000016992 ENSGT01100000263574.b.j #20 ENSGT01050000244815.B.a.a #21 ENSGT00410000025802.g.b.q.a ##27 ENSGT00530000063808.a #23 ENSGT00530000063435.a #22 ENSGT00950000183004.a.a.a.b #24 ENSGT00950000182808.b.b #25 ENSGT00730000111022 #26 ENSGT00410000025802.g.a #27 ENSGT01050000244850.A.a #28 ENSGT00390000004735.A #29 ENSGT00950000182994.B.a.a.a #30 ENSGT00940000156650 #31 ENSGT00390000018621 #32 ENSGT00950000182846.a.a.a.a.a #33 ENSGT00390000003897.s.b.a.a.b #34 ENSGT00390000002034 #35 ENSGT00940000153588.b #36 ENSGT00940000162426 #37 ENSGT00940000162843 Mus DUPLICATION Mus ANCESTRAL SPECIES 9 ENSGT00940000158132 ENSGT00390000018904 ENSGT00390000000360.r.b.a.a ##12 ENSGT00390000006885.a #13 ENSGT00390000012647.d #14 ENSGT00940000154783.f #15 ENSGT00940000160294 #16 ENSGT00390000005685 #17 ENSGT00940000158744 #18 ENSGT00510000047092 #19 ENSGT00940000159803 ENSGT01100000263574.b.j #20 ENSGT01050000244815.B.a.a #21 ENSGT00410000025802.g.b.q.a ##27 ENSGT00530000063808.a #23 ENSGT00530000063435.a.o #22 ENSGT00950000183004.a.a.a.b #24 ENSGT00950000182808.b.b #25 ENSGT00730000111022 #26 ENSGT00410000025802.g.a #27 ENSGT01050000244850.A.a #28 ENSGT00390000004735.A #29 ENSGT00950000182994.B.a.a.a #30 ENSGT00940000156650 #31 ENSGT00390000018621 #32 ENSGT00950000182846.a.a.a.a.a #33 ENSGT00390000003897.s.b.a.a.b #34 ENSGT00390000002034 #35 ENSGT00940000153588.b #36 ENSGT00940000162426 #37 ENSGT00940000162843 Mus_A ANCESTRAL SPECIES 15 ENSGT00390000006885.a #13 ENSGT00390000012647.d #14 ENSGT00940000154783.f #15 ENSGT00940000160294 #16 ENSGT00390000005685 #17 ENSGT00940000158744 #18 ENSGT00510000047092 #19 ENSGT00940000159803 ENSGT00390000001700.a.b.b ENSGT00390000000062.x.b.l.b ENSGT00390000000062.x.b.k.b ENSGT01100000263574.b.j #20 ENSGT01050000244815.B.a.a #21 ENSGT00410000025802.g.b.q.a ##27 ENSGT00530000063808.a #23 ENSGT00530000063435.a.o #22 ENSGT00950000183004.a.a.a.b #24 ENSGT00950000182808.b.b #25 ENSGT00730000111022 #26 ENSGT00410000025802.g.a #27 ENSGT01050000244850.A.a #28 ENSGT00390000004735.A #29 ENSGT00950000182994.B.a.a.a #30 ENSGT00940000156650 #31 ENSGT00390000018621 #32 ENSGT00950000182846.a.a.a.a.a #33 ENSGT00390000003897.s.b.a.a.b #34 ENSGT00390000002034 #35 ENSGT00940000153588.b #36 ENSGT00940000162426 #37 ENSGT00940000162843 Ryukyu mouse MODERN SPECIES 19 Prkx (MGP_CAROLIEiJ_G0033203) #7 Tbl1x (MGP_CAROLIEiJ_G0033202) #8 Cldn34d (MGP_CAROLIEiJ_G0033201) #9 Cldn34b4 (MGP_CAROLIEiJ_G0033200) #10 Pls3 (MGP_CAROLIEiJ_G0033199) #11 MGP_CAROLIEiJ_G0033198 #12 Mtcp1 (MGP_CAROLIEiJ_G0033197) #13 Cmc4 (MGP_CAROLIEiJ_G0033196) #14 Fundc2 (MGP_CAROLIEiJ_G0033195) #15 F8 (MGP_CAROLIEiJ_G0033194) #16 Smim9 (MGP_CAROLIEiJ_G0033193) #17 Mpp1 (MGP_CAROLIEiJ_G0033192) #18 Dkc1 (MGP_CAROLIEiJ_G0033191) #19 Or13ae2 (MGP_CAROLIEiJ_G0033190) #20 Or7r1 (MGP_CAROLIEiJ_G0033189) #21 G6pdx (MGP_CAROLIEiJ_G0033188) #22 Ikbkg (MGP_CAROLIEiJ_G0033187) #23 Fam3a (MGP_CAROLIEiJ_G0033186) #24 Slc10a3 (MGP_CAROLIEiJ_G0033185) #25 Ubl4a (MGP_CAROLIEiJ_G0033184) #26 Lage3 (MGP_CAROLIEiJ_G0033183) #27 Plxna3 (MGP_CAROLIEiJ_G0033182) #28 Fam50a (MGP_CAROLIEiJ_G0033181) #29 Gdi1 (MGP_CAROLIEiJ_G0033180) #30 Atp6ap1 (MGP_CAROLIEiJ_G0033179) #31 Tafazzin (MGP_CAROLIEiJ_G0033178) #32 Dnase1l1 (MGP_CAROLIEiJ_G0033177) #33 MGP_CAROLIEiJ_G0033176 #34 Emd (MGP_CAROLIEiJ_G0033175) #35 Flna (MGP_CAROLIEiJ_G0033174) #36 Tktl1 (MGP_CAROLIEiJ_G0033173) #37 Mus_B ANCESTRAL SPECIES 14 ENSGT00390000018904 ENSGT00390000000360.r.b.a.a ##12 ENSGT00390000006885.a #13 ENSGT00390000012647.d #14 ENSGT00940000154783.f #15 ENSGT00940000160294 #16 ENSGT00390000005685 #17 ENSGT00940000158744 #18 ENSGT00510000047092 #19 ENSGT00940000159803 ENSGT00390000001700.a.b.b.o.a ENSGT01100000263574.b.j #20 ENSGT01050000244815.B.a.a #21 ENSGT00410000025802.g.b.q.a ##27 ENSGT00530000063808.a #23 ENSGT00530000063435.a.o #22 ENSGT00950000183004.a.a.a.b #24 ENSGT00950000182808.b.b #25 ENSGT00730000111022 #26 ENSGT00410000025802.g.a #27 ENSGT01050000244850.A.a #28 ENSGT00390000004735.A #29 ENSGT00950000182994.B.a.a.a #30 ENSGT00940000156650 #31 ENSGT00390000018621 #32 ENSGT00950000182846.a.a.a.a.a #33 ENSGT00390000003897.s.b.a.b.b ##34 ENSGT00390000002034 #35 ENSGT00940000153588.b #36 ENSGT00940000162426 #37 ENSGT00940000162843 Mouse MODERN SPECIES 37 Brcc3 (ENSMUSG00000031201) ##12 Mtcp1 (ENSMUSG00000031200) #13 Cmc4 (ENSMUSG00000090110) #14 Fundc2 (ENSMUSG00000031198) #15 F8 (ENSMUSG00000031196) #16 Smim9 (ENSMUSG00000073094) #17 Mpp1 (ENSMUSG00000031402) #18 Dkc1 (ENSMUSG00000031403) #19 Gab3 (ENSMUSG00000032750) Pwwp4d (ENSMUSG00000079531) Ctag2l2 (ENSMUSG00000079532) ##27 Pwwp4c (ENSMUSG00000079534) Or13ae2 (ENSMUSG00000051706) #20 Or7r1 (ENSMUSG00000043715) #21 Ctag2l1 (ENSMUSG00000079536) ##27 G6pdx (ENSMUSG00000031400) #22 Ikbkg (ENSMUSG00000004221) #23 Fam3a (ENSMUSG00000031399) #24 Slc10a3 (ENSMUSG00000032806) #25 Ubl4a (ENSMUSG00000015290) #26 Lage3 (ENSMUSG00000015289) #27 Plxna3 (ENSMUSG00000031398) #28 Fam50a (ENSMUSG00000001962) #29 Gdi1 (ENSMUSG00000015291) #30 Atp6ap1 (ENSMUSG00000019087) #31 Tafazzin (ENSMUSG00000009995) #32 Dnase1l1 (ENSMUSG00000019088) #33 Rpl10 (ENSMUSG00000008682) #34 Emd (ENSMUSG00000001964) #35 Flna (ENSMUSG00000031328) #36 Tktl1 (ENSMUSG00000031397) #37 Mus_C ANCESTRAL SPECIES 27 ENSGT00950000183097.a.a.a #11 ENSGT00940000158132 ENSGT00390000018904 ENSGT00390000000360.r.b.a.a ##12 ENSGT00390000006885.a #13 ENSGT00390000012647.d #14 ENSGT00940000154783.f #15 ENSGT00940000160294 #16 ENSGT00390000005685 #17 ENSGT00940000158744 #18 ENSGT00510000047092 #19 ENSGT01100000263574.b.j #20 ENSGT01050000244815.B.a.a #21 ENSGT00410000025802.g.b.q.a ##27 ENSGT00530000063808.a #23 ENSGT00530000063435.a.o #22 ENSGT00950000183004.a.a.a.b #24 ENSGT00950000182808.b.b #25 ENSGT00730000111022 #26 ENSGT00410000025802.g.a #27 ENSGT01050000244850.A.a #28 ENSGT00390000004735.A #29 ENSGT00950000182994.B.a.a.a #30 ENSGT00940000156650 #31 ENSGT00390000018621 #32 ENSGT00950000182846.a.a.a.a.a #33 ENSGT00390000003897.s.b.a.b.b ##34 ENSGT00390000002034 #35 ENSGT00940000153588.b #36 ENSGT00940000162426 #37 ENSGT00940000162843 Steppe mouse MODERN SPECIES 1616 Ikbkg (ENSMSIG00000001456) #23 G6pdx (ENSMSIG00000001388) #22 spretus MODERN SPECIES 19 Rab39b (MGP_SPRETEiJ_G0034360) Vbp1 (MGP_SPRETEiJ_G0034359) Brcc3 (MGP_SPRETEiJ_G0034358) ##12 Mtcp1 (MGP_SPRETEiJ_G0034357) #13 Cmc4 (MGP_SPRETEiJ_G0034356) #14 Fundc2 (MGP_SPRETEiJ_G0034355) #15 F8 (MGP_SPRETEiJ_G0034354) #16 Smim9 (MGP_SPRETEiJ_G0034353) #17 Mpp1 (MGP_SPRETEiJ_G0034352) #18 Dkc1 (MGP_SPRETEiJ_G0034351) #19 MGP_SPRETEiJ_G0034348 ##27 MGP_SPRETEiJ_G0034347 Or13ae2 (MGP_SPRETEiJ_G0034346) #20 Or7r1 (MGP_SPRETEiJ_G0034345) #21 MGP_SPRETEiJ_G0034344 ##27 G6pdx (MGP_SPRETEiJ_G0034343) #22 Ikbkg (MGP_SPRETEiJ_G0034342) #23 Fam3a (MGP_SPRETEiJ_G0034341) #24 Slc10a3 (MGP_SPRETEiJ_G0034340) #25 Ubl4a (MGP_SPRETEiJ_G0034339) #26 Lage3 (MGP_SPRETEiJ_G0034338) #27 Plxna3 (MGP_SPRETEiJ_G0034337) #28 Fam50a (MGP_SPRETEiJ_G0034336) #29 Gdi1 (MGP_SPRETEiJ_G0034335) #30 Atp6ap1 (MGP_SPRETEiJ_G0034334) #31 Tafazzin (MGP_SPRETEiJ_G0034333) #32 Dnase1l1 (MGP_SPRETEiJ_G0034332) #33 MGP_SPRETEiJ_G0034331 ##34 Emd (MGP_SPRETEiJ_G0034330) #35 Flna (MGP_SPRETEiJ_G0034329) #36 Tktl1 (MGP_SPRETEiJ_G0034328) #37 Shrew mouse MODERN SPECIES 23 Tbl1x (MGP_PahariEiJ_G0031746) #8 Cldn34d (MGP_PahariEiJ_G0031745) #9 Cldn34b4 (MGP_PahariEiJ_G0031744) #10 Pls3 (MGP_PahariEiJ_G0031743) #11 Brcc3 (MGP_PahariEiJ_G0031742) ##12 Mtcp1 (MGP_PahariEiJ_G0031741) #13 Cmc4 (MGP_PahariEiJ_G0031740) #14 Fundc2 (MGP_PahariEiJ_G0031739) #15 F8 (MGP_PahariEiJ_G0031738) #16 Smim9 (MGP_PahariEiJ_G0031737) #17 Mpp1 (MGP_PahariEiJ_G0031736) #18 Dkc1 (MGP_PahariEiJ_G0031735) #19 Gab3 (MGP_PahariEiJ_G0031734) Or13ae2 (MGP_PahariEiJ_G0031733) #20 Or7r1 (MGP_PahariEiJ_G0031732) #21 G6pdx (MGP_PahariEiJ_G0031731) #22 Ikbkg (MGP_PahariEiJ_G0031730) #23 Fam3a (MGP_PahariEiJ_G0031729) #24 Slc10a3 (MGP_PahariEiJ_G0031728) #25 Ubl4a (MGP_PahariEiJ_G0031727) #26 Lage3 (MGP_PahariEiJ_G0031726) #27 Plxna3 (MGP_PahariEiJ_G0031725) #28 Fam50a (MGP_PahariEiJ_G0031724) #29 Gdi1 (MGP_PahariEiJ_G0031723) #30 Atp6ap1 (MGP_PahariEiJ_G0031722) #31 Tafazzin (MGP_PahariEiJ_G0031721) #32 Dnase1l1 (MGP_PahariEiJ_G0031720) #33 MGP_PahariEiJ_G0031719 #34 Emd (MGP_PahariEiJ_G0031718) #35 Flna (MGP_PahariEiJ_G0031717) #36 MGP_PahariEiJ_G0031716 #37 Mus ANCESTRAL SPECIES 14 ENSGT00940000162224 ENSGT00390000015958 ENSGT00940000157294 ENSGT00390000007332 ENSGT00390000010434.a ENSGT00390000012556 ENSGT00390000004612 ENSGT00950000183177.a.a.b ENSGT00940000159983 ENSGT00390000002398 ENSGT00390000005197.a.b ENSGT01100000263563.c.b ENSGT00390000015965 ENSGT00390000000214.a.b ENSGT00940000157221 ENSGT00530000063435.a.p ##22 ENSGT00940000160197 ENSGT00940000153404.b ENSGT00940000153648.b ENSGT00390000013778 ENSGT00940000159709 ENSGT00940000156247 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000162884 ENSGT00940000162201 ENSGT00390000010054.b ENSGT00390000017929 ENSGT00940000155358 ENSGT00590000083165 ENSGT00730000111066 Mus_A ANCESTRAL SPECIES 6 ENSGT00940000162224 ENSGT00390000015958 ENSGT00940000157294 ENSGT00390000007332 ENSGT00390000010434.a ENSGT00390000012556 ENSGT00390000004612 ENSGT00950000183177.a.a.b ENSGT00940000159983 ENSGT00390000002398 ENSGT00390000005197.a.b ENSGT01100000263563.c.b ENSGT00390000015965 ENSGT00390000000214.a.b ENSGT00940000157221 ENSGT00530000063435.a.p ##22 ENSGT00940000160197 ENSGT00940000153404.b ENSGT00940000153648.b ENSGT00390000013778 ENSGT00940000159709 ENSGT00940000156247 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000162884 ENSGT00940000162201 ENSGT00390000010054.b ENSGT00390000017929 ENSGT00940000155358 ENSGT00590000083165 ENSGT00730000111066 Mus_B ANCESTRAL SPECIES 4 ENSGT00940000162224 ENSGT00390000015958 ENSGT00940000157294 ENSGT00390000007332 ENSGT00390000010434.a ENSGT00390000012556 ENSGT00390000004612 ENSGT00950000183177.a.a.b ENSGT00940000159983 ENSGT00390000002398 ENSGT00390000005197.a.b ENSGT01100000263563.c.b ENSGT00390000015965 ENSGT00390000000214.a.b ENSGT00940000157221 ENSGT00530000063435.a.p ##22 ENSGT00940000160197 ENSGT00940000153404.b ENSGT00940000153648.b ENSGT00390000013778 ENSGT00940000159709 ENSGT00940000156247 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000162884 ENSGT00940000162201 ENSGT00390000010054.b ENSGT00390000017929 ENSGT00940000155358 ENSGT00590000083165 ENSGT00730000111066 Mus_C ANCESTRAL SPECIES 4 ENSGT00940000162224 ENSGT00390000015958 ENSGT00940000157294 ENSGT00390000007332 ENSGT00390000010434.a ENSGT00390000012556 ENSGT00390000004612 ENSGT00950000183177.a.a.b ENSGT00940000159983 ENSGT00390000002398 ENSGT00390000005197.a.b ENSGT01100000263563.c.b ENSGT00390000015965 ENSGT00390000000214.a.b ENSGT00940000157221 ENSGT00530000063435.a.p ##22 ENSGT00940000160197 ENSGT00940000153404.b ENSGT00940000153648.b ENSGT00390000013778 ENSGT00940000159709 ENSGT00940000156247 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000162884 ENSGT00940000162201 ENSGT00390000010054.b ENSGT00390000017929 ENSGT00940000155358 ENSGT00590000083165 ENSGT00730000111066 spretus MODERN SPECIES 14 Sod3 (MGP_SPRETEiJ_G0028210) Ccdc149 (MGP_SPRETEiJ_G0028211) Lgi2 (MGP_SPRETEiJ_G0028212) Sepsecs (MGP_SPRETEiJ_G0028213) Pi4k2b (MGP_SPRETEiJ_G0028214) Zcchc4 (MGP_SPRETEiJ_G0028215) Anapc4 (MGP_SPRETEiJ_G0028216) Slc34a2 (MGP_SPRETEiJ_G0028217) Sel1l3 (MGP_SPRETEiJ_G0028218) Smim20 (MGP_SPRETEiJ_G0028219) MGP_SPRETEiJ_G0028220 Cckar (MGP_SPRETEiJ_G0028221) Tbc1d19 (MGP_SPRETEiJ_G0028222) Stim2 (MGP_SPRETEiJ_G0028223) Pcdh7 (MGP_SPRETEiJ_G0028224) G6pd2 (MGP_SPRETEiJ_G0028225) ##22 Arap2 (MGP_SPRETEiJ_G0028226) Dthd1 (MGP_SPRETEiJ_G0028227) Nwd2 (MGP_SPRETEiJ_G0028228) 0610040J01Rik (MGP_SPRETEiJ_G0028229) Rell1 (MGP_SPRETEiJ_G0028230) Pgm2 (MGP_SPRETEiJ_G0028231) Tbc1d1 (MGP_SPRETEiJ_G0028232) Klf3 (MGP_SPRETEiJ_G0028233) Tlr6 (MGP_SPRETEiJ_G0028235) Fam114a1 (MGP_SPRETEiJ_G0028236) MGP_SPRETEiJ_G0028237 Klhl5 (MGP_SPRETEiJ_G0028238) Wdr19 (MGP_SPRETEiJ_G0028239) Rfc1 (MGP_SPRETEiJ_G0028240) Klb (MGP_SPRETEiJ_G0028241) Steppe mouse MODERN SPECIES 2833 G6pd2 (ENSMSIG00000027190) ##22 Mouse MODERN SPECIES 14 Sod3 (ENSMUSG00000072941) Ccdc149 (ENSMUSG00000045790) Lgi2 (ENSMUSG00000039252) Sepsecs (ENSMUSG00000029173) Pi4k2b (ENSMUSG00000029186) Zcchc4 (ENSMUSG00000029179) Anapc4 (ENSMUSG00000029176) Slc34a2 (ENSMUSG00000029188) Sel1l3 (ENSMUSG00000029189) Smim20 (ENSMUSG00000061461) Rbpj (ENSMUSG00000039191) Cckar (ENSMUSG00000029193) Tbc1d19 (ENSMUSG00000039178) Stim2 (ENSMUSG00000039156) Pcdh7 (ENSMUSG00000029108) G6pd2 (ENSMUSG00000089992) ##22 Arap2 (ENSMUSG00000037999) Dthd1 (ENSMUSG00000090326) Nwd2 (ENSMUSG00000090061) 0610040J01Rik (ENSMUSG00000060512) Rell1 (ENSMUSG00000047881) Pgm2 (ENSMUSG00000029171) Tbc1d1 (ENSMUSG00000029174) Klf3 (ENSMUSG00000029178) Tlr1 (ENSMUSG00000044827) Tlr6 (ENSMUSG00000051498) Fam114a1 (ENSMUSG00000029185) Tmem156 (ENSMUSG00000037913) Klhl5 (ENSMUSG00000054920) Wdr19 (ENSMUSG00000037890) Rfc1 (ENSMUSG00000029191) Ryukyu mouse MODERN SPECIES 14 Sod3 (MGP_CAROLIEiJ_G0027215) Ccdc149 (MGP_CAROLIEiJ_G0027216) Lgi2 (MGP_CAROLIEiJ_G0027217) Sepsecs (MGP_CAROLIEiJ_G0027218) Pi4k2b (MGP_CAROLIEiJ_G0027219) Zcchc4 (MGP_CAROLIEiJ_G0027220) Anapc4 (MGP_CAROLIEiJ_G0027221) Slc34a2 (MGP_CAROLIEiJ_G0027222) Sel1l3 (MGP_CAROLIEiJ_G0027223) Smim20 (MGP_CAROLIEiJ_G0027224) MGP_CAROLIEiJ_G0027225 Cckar (MGP_CAROLIEiJ_G0027226) Tbc1d19 (MGP_CAROLIEiJ_G0027227) Stim2 (MGP_CAROLIEiJ_G0027228) Pcdh7 (MGP_CAROLIEiJ_G0027229) G6pd2 (MGP_CAROLIEiJ_G0027230) ##22 Arap2 (MGP_CAROLIEiJ_G0027231) Dthd1 (MGP_CAROLIEiJ_G0027232) Nwd2 (MGP_CAROLIEiJ_G0027233) 0610040J01Rik (MGP_CAROLIEiJ_G0027234) Rell1 (MGP_CAROLIEiJ_G0027235) Pgm2 (MGP_CAROLIEiJ_G0027236) MGP_CAROLIEiJ_G0027237 Klf3 (MGP_CAROLIEiJ_G0027238) Tlr1 (MGP_CAROLIEiJ_G0027239) Tlr6 (MGP_CAROLIEiJ_G0027240) Fam114a1 (MGP_CAROLIEiJ_G0027241) MGP_CAROLIEiJ_G0027242 Klhl5 (MGP_CAROLIEiJ_G0027243) Wdr19 (MGP_CAROLIEiJ_G0027244) Rfc1 (MGP_CAROLIEiJ_G0027245) Shrew mouse MODERN SPECIES 4 Sod3 (MGP_PahariEiJ_G0016997) Ccdc149 (MGP_PahariEiJ_G0016998) Lgi2 (MGP_PahariEiJ_G0016999) Sepsecs (MGP_PahariEiJ_G0017000) Pi4k2b (MGP_PahariEiJ_G0017001) Zcchc4 (MGP_PahariEiJ_G0017002) Anapc4 (MGP_PahariEiJ_G0017003) Slc34a2 (MGP_PahariEiJ_G0017004) Sel1l3 (MGP_PahariEiJ_G0017005) Smim20 (MGP_PahariEiJ_G0017006) Rbpj (MGP_PahariEiJ_G0017007) Cckar (MGP_PahariEiJ_G0017008) Tbc1d19 (MGP_PahariEiJ_G0017009) Stim2 (MGP_PahariEiJ_G0017010) Pcdh7 (MGP_PahariEiJ_G0017011) G6pd2 (MGP_PahariEiJ_G0017012) ##22 Arap2 (MGP_PahariEiJ_G0017013) Dthd1 (MGP_PahariEiJ_G0017014) Nwd2 (MGP_PahariEiJ_G0017015) 0610040J01Rik (MGP_PahariEiJ_G0017016) Rell1 (MGP_PahariEiJ_G0017017) Pgm2 (MGP_PahariEiJ_G0017018) Tbc1d1 (MGP_PahariEiJ_G0017019) Klf3 (MGP_PahariEiJ_G0017020) Tlr1 (MGP_PahariEiJ_G0017021) Tlr6 (MGP_PahariEiJ_G0017022) Fam114a1 (MGP_PahariEiJ_G0017023) MGP_PahariEiJ_G0017024 Klhl5 (MGP_PahariEiJ_G0017025) Wdr19 (MGP_PahariEiJ_G0017026) Rfc1 (MGP_PahariEiJ_G0017027) Rat MODERN SPECIES 46 ENSRNOG00000067246 LOC120099253 (ENSRNOG00000061511) ##27 Or7r1 (ENSRNOG00000058820) #21 LOC690348 (ENSRNOG00000060839) ##27 Ikbkg (ENSRNOG00000060936) #23 G6pd (ENSRNOG00000056728) #22 Fam3a (ENSRNOG00000060623) #24 Ubl4a (ENSRNOG00000053061) #26 Slc10a3 (ENSRNOG00000060580) #25 Lage3 (ENSRNOG00000053456) Plxna3 (ENSRNOG00000060464) #28 Fam50a (ENSRNOG00000058439) #29 Gdi1 (ENSRNOG00000056870) #30 Atp6ap1 (ENSRNOG00000054352) #31 Tafazzin (ENSRNOG00000053023) #32 ENSRNOG00000063225 Dnase1l1 (ENSRNOG00000055641) #33 Rpl10 (ENSRNOG00000056765) ##34 Emd (ENSRNOG00000058882) #35 Flna (ENSRNOG00000054890) #36 Tktl1 (ENSRNOG00000055557) #37 Cricetidae ANCESTRAL SPECIES 8 ENSGT00940000158132 ENSGT00390000018904 ENSGT00390000000360.r.b.a.a ##12 ENSGT00390000006885.a #13 ENSGT00390000012647.d #14 ENSGT00940000154783.f.db.b #15 ENSGT00940000160294 #16 ENSGT00390000005685 #17 ENSGT00940000158744 #18 ENSGT00510000047092 #19 ENSGT00940000159803 ENSGT01050000244815.B.a.a #21 ENSGT01100000263574.b.j #20 ENSGT00410000025802.g.b.q.a ##27 ENSGT00530000063808.a #23 ENSGT00530000063435.a #22 ENSGT00950000183004.a.a.a.b #24 ENSGT00950000182808.b.b #25 ENSGT00730000111022 #26 ENSGT00410000025802.g.a #27 ENSGT01050000244850.A.a #28 ENSGT00390000004735.A #29 ENSGT00950000182994.B.a.a.a #30 ENSGT00940000156650 #31 ENSGT00390000018621 #32 ENSGT00950000182846.a.a.a.a.a #33 ENSGT00390000003897.s.b.a.b.b ##34 ENSGT00390000002034 #35 ENSGT00940000153588.b #36 ENSGT00940000162426 #37 ENSGT00940000162843 Cricetinae ANCESTRAL SPECIES 46 ENSGT00530000063582.a ENSGT00940000158132 ENSGT00390000018904 ENSGT00390000000360.r.b.a.a ##12 ENSGT00390000006885.a #13 ENSGT00390000012647.d #14 ENSGT00940000154783.f.db.b #15 ENSGT00940000160294 #16 ENSGT00390000005685 #17 ENSGT00940000158744 #18 ENSGT00510000047092 #19 ENSGT00940000159803 ENSGT00410000025802.g.b.q.a ##27 ENSGT01050000244815.B.a.a #21 ENSGT00530000063808.a #23 ENSGT00530000063435.a #22 ENSGT00950000183004.a.a.a.b #24 ENSGT00950000182808.b.b #25 ENSGT00730000111022 #26 ENSGT00410000025802.g.a #27 ENSGT01050000244850.A.a #28 ENSGT00390000004735.A #29 ENSGT00950000182994.B.a.a.a #30 ENSGT00940000156650 #31 ENSGT00390000018621 #32 ENSGT00950000182846.a.a.a.a.a #33 ENSGT00390000003897.s.b.a.b.b ##34 ENSGT00390000002034 #35 ENSGT00940000153588.b #36 ENSGT00940000162843 ENSGT01030000234549.a.a.a.b Golden Hamster MODERN SPECIES 857 Ikbkg (ENSMAUG00000008491) #23 ENSMAUG00000008547 #22 Fam3a (ENSMAUG00000009961) #24 Slc10a3 (ENSMAUG00000005496) #25 Ubl4a (ENSMAUG00000019612) #26 Lage3 (ENSMAUG00000021750) #27 Plxna3 (ENSMAUG00000019645) #28 Fam50a (ENSMAUG00000020359) #29 Gdi1 (ENSMAUG00000001476) #30 Atp6ap1 (ENSMAUG00000014514) #31 Tafazzin (ENSMAUG00000001836) #32 Dnase1l1 (ENSMAUG00000005714) #33 ENSMAUG00000013615 ##34 Emd (ENSMAUG00000016655) #35 Tex28 (ENSMAUG00000011775) Opn1mw (ENSMAUG00000017549) Mecp2 (ENSMAUG00000018195) Cricetidae_B ANCESTRAL SPECIES 28 ENSGT00940000158132 ENSGT00390000018904 ENSGT00390000000360.r.b.a.a ##12 ENSGT00390000006885.a #13 ENSGT00390000012647.d #14 ENSGT00940000154783.f.db.b #15 ENSGT00940000160294 #16 ENSGT00390000005685 #17 ENSGT00940000158744 #18 ENSGT00510000047092 #19 ENSGT00940000159803 ENSGT01050000244815.B.a.a #21 ENSGT01100000263574.b.j #20 ENSGT00410000025802.g.b.q.a ##27 ENSGT00530000063808.a #23 ENSGT00530000063435.a #22 ENSGT00950000183004.a.a.a.b #24 ENSGT00950000182808.b.b #25 ENSGT00730000111022 #26 ENSGT00410000025802.g.a #27 ENSGT01050000244850.A.a #28 ENSGT00390000004735.A #29 ENSGT00950000182994.B.a.a.a #30 ENSGT00940000156650 #31 ENSGT00390000018621 #32 ENSGT00950000182846.a.a.a.a.a #33 ENSGT00390000003897.s.b.a.b.b ##34 ENSGT00390000002034 #35 ENSGT00940000153588.b #36 ENSGT00940000162426 #37 ENSGT00940000162843 Northern American deer mouse MODERN SPECIES 475 Mtcp1 (ENSPEMG00000030977) #13 Cmc4 (ENSPEMG00000024388) #14 ENSPEMG00000026725 #15 F8 (ENSPEMG00000014119) #16 Smim9 (ENSPEMG00000010945) #17 Mpp1 (ENSPEMG00000014261) #18 ENSPEMG00000022395 Dkc1 (ENSPEMG00000013348) #19 Gab3 (ENSPEMG00000012634) Or13ae2 (ENSPEMG00000025767) #20 Or7r1 (ENSPEMG00000009130) #21 ENSPEMG00000026245 ##27 ENSPEMG00000027888 ##27 ENSPEMG00000029875 ##27 Ikbkg (ENSPEMG00000031110) #23 ENSPEMG00000017532 #22 Fam3a (ENSPEMG00000004757) #24 Ubl4a (ENSPEMG00000027881) #26 Lage3 (ENSPEMG00000011229) #27 Plxna3 (ENSPEMG00000012781) #28 Fam50a (ENSPEMG00000001727) #29 Gdi1 (ENSPEMG00000010952) #30 Atp6ap1 (ENSPEMG00000009724) #31 Tafazzin (ENSPEMG00000007822) #32 Dnase1l1 (ENSPEMG00000013008) #33 ENSPEMG00000015703 ##34 Emd (ENSPEMG00000012081) #35 Flna (ENSPEMG00000009562) #36 Tktl1 (ENSPEMG00000012644) #37 Tex28 (ENSPEMG00000009005) Opn1mw (ENSPEMG00000010994) Prairie vole MODERN SPECIES 168 Rab39b (ENSMOCG00000006994) Vbp1 (ENSMOCG00000013440) ENSMOCG00000000841 ##12 Cmc4 (ENSMOCG00000019858) #14 Mtcp1 (ENSMOCG00000002450) #13 Fundc2 (ENSMOCG00000013641) #15 F8 (ENSMOCG00000006178) #16 ENSMOCG00000001114 Smim9 (ENSMOCG00000003619) #17 Mpp1 (ENSMOCG00000000082) #18 ENSMOCG00000001169 #19 Gab3 (ENSMOCG00000015626) Or7r1 (ENSMOCG00000002349) #21 ENSMOCG00000017711 ##27 Ikbkg (ENSMOCG00000011244) #23 ENSMOCG00000015421 #22 Fam3a (ENSMOCG00000016025) #24 Slc10a3 (ENSMOCG00000008789) #25 Ubl4a (ENSMOCG00000000785) #26 ENSMOCG00000002473 #27 Plxna3 (ENSMOCG00000002375) #28 Fam50a (ENSMOCG00000015890) #29 Gdi1 (ENSMOCG00000006575) #30 Atp6ap1 (ENSMOCG00000001026) #31 Tafazzin (ENSMOCG00000010108) #32 Dnase1l1 (ENSMOCG00000017402) #33 ENSMOCG00000013831 ##34 Emd (ENSMOCG00000003977) #35 Flna (ENSMOCG00000007826) #36 Tex28 (ENSMOCG00000011491) ENSMOCG00000017630 Upper Galilee mountains blind mole rat MODERN SPECIES 660 Or13ae2 (ENSNGAG00000001537) #20 ENSNGAG00000024034 ##27 Ikbkg (ENSNGAG00000019535) #23 ENSNGAG00000020668 #22 Fam3a (ENSNGAG00000016683) #24 Slc10a3 (ENSNGAG00000007975) #25 Ubl4a (ENSNGAG00000023782) #26 Lage3 (ENSNGAG00000023293) #27 Plxna3 (ENSNGAG00000022548) #28 ENSNGAG00000012608 Fam50a (ENSNGAG00000021495) #29 Gdi1 (ENSNGAG00000023333) #30 Atp6ap1 (ENSNGAG00000021512) #31 Tafazzin (ENSNGAG00000008680) #32 Dnase1l1 (ENSNGAG00000024155) #33 ENSNGAG00000023746 ##34 Emd (ENSNGAG00000018770) #35 Flna (ENSNGAG00000013524) #36 Tex28 (ENSNGAG00000023701) Lesser Egyptian jerboa MODERN SPECIES 224 Ikbkg (ENSJJAG00000023964) #23 ENSJJAG00000023806 #22 Fam3a (ENSJJAG00000023156) #24 Slc10a3 (ENSJJAG00000022929) #25 ENSJJAG00000022788 #26 Lage3 (ENSJJAG00000022478) #27 Plxna3 (ENSJJAG00000020257) #28 Fam50a (ENSJJAG00000010389) #29 Gdi1 (ENSJJAG00000008815) #30 ENSJJAG00000019557 #31 Tafazzin (ENSJJAG00000015233) #32 ENSJJAG00000014235 ##34 Emd (ENSJJAG00000019656) #35 Flna (ENSJJAG00000015450) #36 Tktl1 (ENSJJAG00000010328) #37 Tex28 (ENSJJAG00000019769) Opn1mw (ENSJJAG00000022699) Kangaroo rat MODERN SPECIES 526 F8a (ENSDORG00000028723) Rab39b (ENSDORG00000029496) ENSDORG00000004628 ENSDORG00000013161 ##12 ENSDORG00000029487 #14 Mtcp1 (ENSDORG00000013159) #13 Fundc2 (ENSDORG00000013156) #15 ENSDORG00000028874 F8 (ENSDORG00000013155) #16 ENSDORG00000024019 Mpp1 (ENSDORG00000013568) #18 ENSDORG00000013566 #19 Gab3 (ENSDORG00000006809) ENSDORG00000000625 ##27 Ikbkg (ENSDORG00000028140) #23 ENSDORG00000012731 #22 Fam3a (ENSDORG00000025173) #24 Slc10a3 (ENSDORG00000005197) #25 Ubl4a (ENSDORG00000005196) #26 Lage3 (ENSDORG00000029875) #27 Plxna3 (ENSDORG00000000853) #28 Fam50a (ENSDORG00000008851) #29 Gdi1 (ENSDORG00000008848) #30 Atp6ap1 (ENSDORG00000008847) #31 Tafazzin (ENSDORG00000029677) #32 ENSDORG00000004369 ##34 Flna (ENSDORG00000004370) #36 Emd (ENSDORG00000004375) #35 Tktl1 (ENSDORG00000013785) #37 Tex28 (ENSDORG00000010136) Opn1mw (ENSDORG00000026454) Rodentia_A ANCESTRAL SPECIES 9 ENSGT00950000183068.a.a ENSGT00390000000360.r.b ##12 ENSGT00390000006885.a #13 ENSGT00390000012647.d #14 ENSGT00940000154783.f #15 ENSGT00390000016992 ENSGT00940000163020 ENSGT00940000160294 #16 ENSGT00390000005685 #17 ENSGT00940000158744 #18 ENSGT00510000047092 #19 ENSGT00940000159803 ENSGT00410000025802.g.b ##27 ENSGT01050000244815.B.a.a #21 ENSGT00530000063808.a #23 ENSGT00530000063435.a #22 ENSGT00950000183004.a.a.a.b #24 ENSGT00950000182808.b.b #25 ENSGT00730000111022 #26 ENSGT00410000025802.g.a #27 ENSGT01050000244850.A.a #28 ENSGT00390000004735.A #29 ENSGT00950000182994.B.a.a.a #30 ENSGT00940000156650 #31 ENSGT00390000018621 #32 ENSGT00950000182846.a.a.a.a.a #33 ENSGT00390000003897.s.b.a.b.b ##34 ENSGT00390000002034 #35 ENSGT00940000153588.b #36 ENSGT00940000162426 #37 ENSGT00940000162843 Sciuridae ANCESTRAL SPECIES 27 ENSGT01050000244815.B.a.a #21 ENSGT00530000063808.a #23 ENSGT00530000063435.a #22 ENSGT00950000183004.a.a.a.b #24 ENSGT00950000182808.b.b #25 ENSGT00730000111022 #26 ENSGT00410000025802.g.a #27 ENSGT01050000244850.A.a #28 ENSGT00390000004735.A #29 ENSGT00950000182994.B.a.a.a #30 ENSGT00940000156650 #31 ENSGT00390000018621 #32 ENSGT00950000182846.a.a.a.a.a #33 ENSGT00390000003897.s.b.a.b.b ##34 ENSGT00390000002034 #35 ENSGT00940000153588.b #36 ENSGT00940000162426 #37 ENSGT00940000162843 Marmotini ANCESTRAL SPECIES 83 ENSGT01050000244815.B.a.a #21 ENSGT00530000063808.a #23 ENSGT00530000063435.a #22 ENSGT00950000183004.a.a.a.b #24 ENSGT00950000182808.b.b #25 ENSGT00730000111022 #26 ENSGT01050000244850.A.a #28 ENSGT00390000004735.A.e #29 ENSGT00950000182994.B.a.a.a #30 ENSGT00940000156650 #31 ENSGT00390000018621 #32 ENSGT00950000182846.a.a.a.a.a #33 ENSGT00390000003897.s.b.a.b.b ##34 ENSGT00390000002034 #35 ENSGT00940000153588.b #36 ENSGT00940000162426 #37 ENSGT00940000162843 ENSGT01030000234549.a.a.a.b Marmotini_b ANCESTRAL SPECIES 124 ENSGT01050000244815.B.a.a #21 ENSGT00530000063808.a #23 ENSGT00530000063435.a #22 ENSGT00950000183004.a.a.a.b #24 ENSGT00950000182808.b.b #25 ENSGT00730000111022 #26 ENSGT01050000244850.A.a #28 ENSGT00390000004735.A.e #29 ENSGT00950000182994.B.a.a.a #30 ENSGT00940000156650 #31 ENSGT00390000018621 #32 ENSGT00950000182846.a.a.a.a.a #33 ENSGT00390000003897.s.b.a.b.b ##34 ENSGT00390000002034 #35 ENSGT00940000153588.b #36 ENSGT00940000162426 #37 ENSGT00940000162843 ENSGT01030000234549.a.a.a.b Squirrel MODERN SPECIES 409 ENSSTOG00000027400 #21 G6PD (ENSSTOG00000021077) #22 IKBKG (ENSSTOG00000011082) #23 FAM3A (ENSSTOG00000022234) #24 SLC10A3 (ENSSTOG00000026515) #25 UBL4A (ENSSTOG00000022150) #26 PLXNA3 (ENSSTOG00000003432) #28 ENSSTOG00000004448 #29 GDI1 (ENSSTOG00000004429) #30 ATP6AP1 (ENSSTOG00000004401) #31 TAFAZZIN (ENSSTOG00000011873) #32 DNASE1L1 (ENSSTOG00000011867) #33 ENSSTOG00000011857 ##34 EMD (ENSSTOG00000014689) #35 FLNA (ENSSTOG00000005036) #36 TKTL1 (ENSSTOG00000005014) #37 TEX28 (ENSSTOG00000022078) Alpin marmot MODERN SPECIES 136 ENSMMMG00000014778 #21 IKBKG (ENSMMMG00000014671) #23 G6PD (ENSMMMG00000014645) #22 FAM3A (ENSMMMG00000014550) #24 SLC10A3 (ENSMMMG00000014545) #25 UBL4A (ENSMMMG00000014537) #26 PLXNA3 (ENSMMMG00000014513) #28 FAM50A (ENSMMMG00000014490) #29 GDI1 (ENSMMMG00000014475) #30 TAFAZZIN (ENSMMMG00000014302) #32 DNASE1L1 (ENSMMMG00000014299) #33 ENSMMMG00000014279 ##34 EMD (ENSMMMG00000014270) #35 FLNA (ENSMMMG00000010080) #36 TKTL1 (ENSMMMG00000010036) #37 TEX28 (ENSMMMG00000010023) ENSMMMG00000010010 MECP2 (ENSMMMG00000009970) Eurasian red squirrel MODERN SPECIES 156 MTCP1 (ENSSVLG00005016077) #13 ENSSVLG00005016124 #15 F8 (ENSSVLG00005016200) #16 ENSSVLG00005016424 ENSSVLG00005016435 SMIM9 (ENSSVLG00005016452) #17 MPP1 (ENSSVLG00005016498) #18 DKC1 (ENSSVLG00005016642) #19 GAB3 (ENSSVLG00005016708) ENSSVLG00005016985 ENSSVLG00005017050 ##27 ENSSVLG00005017122 ENSSVLG00005017166 #21 ENSSVLG00005017218 IKBKG (ENSSVLG00005017293) #23 G6PD (ENSSVLG00005017520) #22 FAM3A (ENSSVLG00005017584) #24 SLC10A3 (ENSSVLG00005017774) #25 UBL4A (ENSSVLG00005017819) #26 LAGE3 (ENSSVLG00005017858) #27 PLXNA3 (ENSSVLG00005017881) #28 FAM50A (ENSSVLG00005017921) #29 GDI1 (ENSSVLG00005017962) #30 ATP6AP1 (ENSSVLG00005018016) #31 TAFAZZIN (ENSSVLG00005018196) #32 DNASE1L1 (ENSSVLG00005018343) #33 ENSSVLG00005018375 ##34 FLNA (ENSSVLG00005018546) #36 EMD (ENSSVLG00005019520) #35 TKTL1 (ENSSVLG00005017318) #37 TEX28 (ENSSVLG00005017596) Hystricomorpha ANCESTRAL SPECIES 54 ENSGT00940000161397 ENSGT00940000158132 ENSGT00390000018904 ENSGT00950000183068.a.a ENSGT00390000000360.r.a.a ##12 ENSGT00390000000360.r.b ##12 ENSGT00390000006885.a #13 ENSGT00390000012647.d #14 ENSGT00940000154783.f #15 ENSGT00940000160294 #16 ENSGT00940000158744 #18 ENSGT00510000047092 #19 ENSGT00940000159803 ENSGT01050000244815.B.a.a #21 ENSGT00530000063808.a #23 ENSGT00530000063435.a #22 ENSGT00950000183004.a.a.a.b #24 ENSGT00950000182808.b.b #25 ENSGT00730000111022 #26 ENSGT00410000025802.g.a #27 ENSGT01050000244850.A.a #28 ENSGT00390000004735.B.a.a ##29 ENSGT00950000182994.B.a.a.a #30 ENSGT00940000156650 #31 ENSGT00390000018621 #32 ENSGT00950000182846.a.a.a.a.a #33 ENSGT00390000003897.s.b.a.b.b ##34 ENSGT00390000002034 #35 ENSGT00940000153588.b #36 ENSGT00940000162426 #37 ENSGT00940000162843 Hystricomorpha_a ANCESTRAL SPECIES 61 ENSGT00940000161397 ENSGT00940000158132 ENSGT00390000018904 ENSGT00950000183068.a.a ENSGT00390000000360.r.a.a ##12 ENSGT00390000000360.r.b ##12 ENSGT00390000006885.a #13 ENSGT00390000012647.d #14 ENSGT00940000154783.f #15 ENSGT00940000160294 #16 ENSGT00940000158744 #18 ENSGT00510000047092 #19 ENSGT00940000159803 ENSGT01050000244815.B.a.a #21 ENSGT00530000063808.a #23 ENSGT00530000063435.a #22 ENSGT00950000183004.a.a.a.b #24 ENSGT00950000182808.b.b #25 ENSGT00730000111022 #26 ENSGT00410000025802.g.a #27 ENSGT01050000244850.A.a #28 ENSGT00390000004735.B.a.a ##29 ENSGT00950000182994.B.a.a.a #30 ENSGT00940000156650 #31 ENSGT00390000018621 #32 ENSGT00950000182846.a.a.a.a.a #33 ENSGT00390000003897.s.b.a.b.b ##34 ENSGT00390000002034 #35 ENSGT00940000153588.b #36 ENSGT00940000162426 #37 ENSGT00940000162843 Hystricomorpha_b ANCESTRAL SPECIES 84 ENSGT00530000063808.a #23 ENSGT00530000063435.a #22 ENSGT00950000183004.a.a.a.b #24 ENSGT00950000182808.b.b #25 ENSGT00730000111022 #26 ENSGT00410000025802.g.a #27 ENSGT01050000244850.A.a #28 ENSGT00390000004735.B.a.a ##29 ENSGT00950000182994.B.a.a.a #30 ENSGT00940000156650 #31 ENSGT00390000018621 #32 ENSGT00950000182846.a.a.a.a.a #33 ENSGT00390000003897.s.b.a.b.b ##34 ENSGT00390000002034 #35 ENSGT00940000153588.b #36 ENSGT00940000162426 #37 ENSGT01030000234549.a.a.a.b Degu DUPLICATION Degu MODERN SPECIES 259 IKBKG (ENSODEG00000005911) #23 ENSODEG00000006077 #22 FAM3A (ENSODEG00000006189) #24 UBL4A (ENSODEG00000006287) #26 ENSODEG00000006315 #27 PLXNA3 (ENSODEG00000006368) #28 ENSODEG00000006510 ##29 GDI1 (ENSODEG00000006550) #30 ATP6AP1 (ENSODEG00000003643) #31 TAFAZZIN (ENSODEG00000003758) #32 DNASE1L1 (ENSODEG00000003830) #33 ENSODEG00000003868 ##34 EMD (ENSODEG00000003890) #35 FLNA (ENSODEG00000004055) #36 TKTL1 (ENSODEG00000004431) #37 ENSODEG00000004454 ENSODEG00000004473 Degu MODERN SPECIES 226 ENSODEG00000020167 PCDHAC2 (ENSODEG00000012473) PCDHB1 (ENSODEG00000019919) PCDHB2 (ENSODEG00000013246) ENSODEG00000012569 PCDHB4 (ENSODEG00000011616) ENSODEG00000012750 ENSODEG00000011904 ENSODEG00000011435 ENSODEG00000012347 #22 ENSODEG00000012003 PCDHB6 (ENSODEG00000011685) ENSODEG00000011819 PCDHB7 (ENSODEG00000014075) PCDHB13 (ENSODEG00000012740) ENSODEG00000012330 ENSODEG00000011147 ENSODEG00000011579 ENSODEG00000011345 PCDHB15 (ENSODEG00000013503) SLC25A2 (ENSODEG00000020131) ENSODEG00000014858 PCDHGA2 (ENSODEG00000014760) PCDHGA3 (ENSODEG00000011289) PCDHGB1 (ENSODEG00000012466) Long-tailed chinchilla MODERN SPECIES 287 ENSCLAG00000017603 #21 ENSCLAG00000017457 #20 IKBKG (ENSCLAG00000003721) #23 G6PD (ENSCLAG00000003284) #22 FAM3A (ENSCLAG00000002528) #24 SLC10A3 (ENSCLAG00000002307) #25 UBL4A (ENSCLAG00000002161) #26 LAGE3 (ENSCLAG00000002127) #27 PLXNA3 (ENSCLAG00000001910) #28 ENSCLAG00000002733 ##29 GDI1 (ENSCLAG00000002425) #30 ATP6AP1 (ENSCLAG00000002132) #31 TAFAZZIN (ENSCLAG00000010970) #32 DNASE1L1 (ENSCLAG00000003494) #33 ENSCLAG00000003108 ##34 FLNA (ENSCLAG00000003106) #36 EMD (ENSCLAG00000002874) #35 TKTL1 (ENSCLAG00000001825) #37 ENSCLAG00000001715 Guinea pig MODERN SPECIES 148 SPRY3 (ENSCPOG00000038854) TMLHE (ENSCPOG00000005415) CLIC2 (ENSCPOG00000007641) RAB39B (ENSCPOG00000039524) VBP1 (ENSCPOG00000013652) ENSCPOG00000001882 ##12 CMC4 (ENSCPOG00000033896) #14 MTCP1 (ENSCPOG00000034922) #13 FUNDC2 (ENSCPOG00000015635) #15 F8 (ENSCPOG00000007773) #16 MPP1 (ENSCPOG00000008826) #18 DKC1 (ENSCPOG00000008825) #19 GAB3 (ENSCPOG00000002987) ENSCPOG00000026136 #21 IKBKG (ENSCPOG00000021550) #23 G6PD (ENSCPOG00000021395) #22 FAM3A (ENSCPOG00000019367) #24 SLC10A3 (ENSCPOG00000007289) #25 UBL4A (ENSCPOG00000040690) #26 ENSCPOG00000034445 #27 PLXNA3 (ENSCPOG00000011493) #28 ENSCPOG00000005974 ##29 GDI1 (ENSCPOG00000032738) #30 ATP6AP1 (ENSCPOG00000005972) #31 TAFAZZIN (ENSCPOG00000020454) #32 DNASE1L1 (ENSCPOG00000005648) #33 ENSCPOG00000002355 ##34 EMD (ENSCPOG00000002642) #35 FLNA (ENSCPOG00000002672) #36 TKTL1 (ENSCPOG00000011767) #37 ENSCPOG00000021789 Naked mole-rat female MODERN SPECIES 31 ENSHGLG00000032904 #23 G6PD (ENSHGLG00000001124) #22 FAM3A (ENSHGLG00000005912) #24 ENSHGLG00000003702 #26 LAGE3 (ENSHGLG00000039993) #27 PLXNA3 (ENSHGLG00000002186) #28 ENSHGLG00000039319 ##29 GDI1 (ENSHGLG00000003275) #30 ATP6AP1 (ENSHGLG00000002607) #31 ENSHGLG00000009984 #32 DNASE1L1 (ENSHGLG00000013868) #33 RPL10 (ENSHGLG00000002349) #34 TKTL1 (ENSHGLG00000042978) #37 ENSHGLG00000043472 MECP2 (ENSHGLG00000000899) IRAK1 (ENSHGLG00000002116) HCFC1 (ENSHGLG00000001143) Lagomorpha ANCESTRAL SPECIES 103 ENSGT00530000063808.a #23 ENSGT00530000063435.a #22 ENSGT00950000183004.a.a.a.b #24 ENSGT00950000182808.b.b #25 ENSGT00410000025802.g.a #27 ENSGT01050000244850.A.a #28 ENSGT00390000004735.A #29 ENSGT00950000182994.B.a.a.a #30 ENSGT00940000156650 #31 ENSGT00390000018621 #32 ENSGT00390000002034 #35 ENSGT00940000153588.b #36 ENSGT00940000162426 #37 ENSGT00940000162843 ENSGT01030000234549.a.a.a.b ENSGT00530000063687.b.b.b ENSGT00940000160502 Rabbit MODERN SPECIES 549 IKBKG (ENSOCUG00000007873) #23 G6PD (ENSOCUG00000007866) #22 FAM3A (ENSOCUG00000015663) #24 SLC10A3 (ENSOCUG00000022433) #25 LAGE3 (ENSOCUG00000028990) #27 PLXNA3 (ENSOCUG00000015623) #28 FAM50A (ENSOCUG00000017644) #29 GDI1 (ENSOCUG00000017639) #30 ENSOCUG00000017631 #31 TAFAZZIN (ENSOCUG00000000885) #32 RA_m006_jsm7BED4f (ENSOCUG00000024511) #36 EMD (ENSOCUG00000000882) #35 FLNA (ENSOCUG00000000880) #36 TKTL1 (ENSOCUG00000000883) #37 TEX28 (ENSOCUG00000021000) OPN1MW (ENSOCUG00000011466) MECP2 (ENSOCUG00000013147)