Boreoeutheria	ANCESTRAL SPECIES	11	ENSGT00950000183068.a.a	ENSGT00390000000360.r #9	ENSGT00390000006885.a #10	ENSGT00390000012647 #11	ENSGT00940000154783.f #12	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000154783.e.b ##12	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00410000025802.h ##17	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.a.b ##34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Euarchontoglires	ANCESTRAL SPECIES	11	ENSGT00390000012647 #11	ENSGT00940000154783.f #12	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000154783.e.b ##12	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00410000025802.g.b #17	ENSGT01050000244815.B.a.a #20	ENSGT01030000238159	ENSGT00410000025802.h ##17	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Primates	ANCESTRAL SPECIES	23	ENSGT00390000000360.r.a.b ##9	ENSGT00390000000360.q.a ##9	ENSGT00390000006885.a #10	ENSGT00390000012647 #11	ENSGT00940000154783.f #12	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000154783.e.b ##12	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00410000025802.h ##17	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Haplorrhini	ANCESTRAL SPECIES	33	ENSGT00390000012647 #11	ENSGT00940000154783.e.b ##12	ENSGT00510000047733	ENSGT00950000183055.a.b	ENSGT00530000063582.a	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000154783.f #12	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00410000025802.h ##17	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Simiiformes	ANCESTRAL SPECIES	9	ENSGT00390000018904 #8	ENSGT00950000183068.a.a	ENSGT00390000000360.q.a ##9	ENSGT00390000006885.a #10	ENSGT00390000012647 #11	ENSGT00940000154783.e.b ##12	ENSGT00940000163020	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00410000025802.h.b ##17	ENSGT00410000025802.h.a ##17	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Catarrhini	ANCESTRAL SPECIES	12	ENSGT00390000000360.q.a ##9	ENSGT00390000006885.a #10	ENSGT00390000012647 #11	ENSGT00940000154783.e.b ##12	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00410000025802.h.a.b ##17	ENSGT00410000025802.h.a.a ##17	ENSGT00390000002566	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a.m #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34	ENSGT00390000003897.s.b.a.a.b.e.a ##34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37
Cercopithecidae	ANCESTRAL SPECIES	37	ENSGT00390000006885.a #10	ENSGT00390000012647 #11	ENSGT00940000154783.e.b ##12	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00410000025802.h.a.b ##17	ENSGT00410000025802.h.a.a ##17	ENSGT00390000002566	ENSGT00530000063808.a #23	ENSGT00910000147580	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a.m #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34
Cercopithecinae	ANCESTRAL SPECIES	25	ENSGT00390000006885.a #10	ENSGT00390000012647 #11	ENSGT00940000154783.e.b ##12	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00410000025802.h.a.b ##17	ENSGT00410000025802.h.a.a ##17	ENSGT00390000002566	ENSGT00530000063808.a #23	ENSGT00910000147580	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a.m #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34
Cercopithecinae_a	ANCESTRAL SPECIES	11	ENSGT00390000000360.q.a ##9	ENSGT00390000006885.a #10	ENSGT00390000012647 #11	ENSGT00940000154783.e.b ##12	ENSGT00390000000950.c.b.d.a.d	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00410000025802.h.a.b ##17	ENSGT00410000025802.h.a.a ##17	ENSGT00390000002566	ENSGT00530000063808.a #23	ENSGT00910000147580	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a.m #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34	ENSGT00940000153588.b #36	ENSGT00390000002034 #35	ENSGT00940000162426 #37	ENSGT00940000162843
Cercopithecinae_b	ANCESTRAL SPECIES	51	ENSGT00390000013740	ENSGT00940000161383	ENSGT00390000011272	ENSGT00940000160502	ENSGT00910000146917	ENSGT00910000147052	ENSGT00530000063687.b.b.b	ENSGT01030000234549.a.a.a.b	ENSGT00940000162843	ENSGT00940000162426 #37	ENSGT00940000153588.b #36	ENSGT00390000002034 #35	ENSGT00390000002566	ENSGT00530000063808.a #23	ENSGT00910000147580	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a.m #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.a.b.e.a ##34
Cercopithecinae_d	ANCESTRAL SPECIES	195													ENSGT00390000002566	ENSGT00530000063808.a #23	ENSGT00910000147580	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a.m #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34
Drill	MODERN SPECIES	361													ENSMLEG00000009651	ENSMLEG00000037003	IKBKG (ENSMLEG00000032380) #23	G6PD (ENSMLEG00000040869) #22	FAM3A (ENSMLEG00000031424) #24	SLC10A3 (ENSMLEG00000031363) #25	UBL4A (ENSMLEG00000029271) #26	LAGE3 (ENSMLEG00000031787) #27	PLXNA3 (ENSMLEG00000039715) #28	FAM50A (ENSMLEG00000034206) #29	GDI1 (ENSMLEG00000014459) #30	ATP6AP1 (ENSMLEG00000026333) #31	TAFAZZIN (ENSMLEG00000041537) #32	DNASE1L1 (ENSMLEG00000042325) #33	ENSMLEG00000025660 #34
Sooty mangabey	MODERN SPECIES	567															ENSCATG00000021841	G6PD (ENSCATG00000009953) #22	FAM3A (ENSCATG00000022515) #24	SLC10A3 (ENSCATG00000032881) #25	UBL4A (ENSCATG00000036850) #26	LAGE3 (ENSCATG00000025654) #27	PLXNA3 (ENSCATG00000031009) #28	FAM50A (ENSCATG00000032169) #29	GDI1 (ENSCATG00000031684) #30	ATP6AP1 (ENSCATG00000039938) #31	TAFAZZIN (ENSCATG00000034866) #32	DNASE1L1 (ENSCATG00000014042) #33	ENSCATG00000030970 #34
Macaca	ANCESTRAL SPECIES	13	ENSGT00390000018904.hb #8	ENSGT00950000183068.a.a	ENSGT00390000000360.q.a ##9	ENSGT00390000006885.a #10	ENSGT00390000012647 #11	ENSGT00940000154783.e.b ##12	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00410000025802.h.a.b ##17	ENSGT00410000025802.h.a.a ##17	ENSGT00390000002566	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a.m #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34	ENSGT00940000153588.b #36	ENSGT00390000002034 #35	ENSGT00940000162426 #37	ENSGT00940000162843
Pig-tailed macaque	MODERN SPECIES	403																G6PD (ENSMNEG00000031229) #22	FAM3A (ENSMNEG00000034258) #24	SLC10A3 (ENSMNEG00000042913) #25	UBL4A (ENSMNEG00000039513) #26	LAGE3 (ENSMNEG00000044542) #27	PLXNA3 (ENSMNEG00000029520) #28	FAM50A (ENSMNEG00000033378) #29	GDI1 (ENSMNEG00000029142) #30	ATP6AP1 (ENSMNEG00000040534) #31	TAFAZZIN (ENSMNEG00000038446) #32	DNASE1L1 (ENSMNEG00000032874) #33	ENSMNEG00000038094 #34	FLNA (ENSMNEG00000040468) #36	EMD (ENSMNEG00000042917) #35	TKTL1 (ENSMNEG00000045070) #37	TEX28 (ENSMNEG00000032132)
Macaca_a	ANCESTRAL SPECIES	11	ENSGT00940000158132 #7	ENSGT00390000018904.hb #8	ENSGT00950000183068.a.a	ENSGT00390000000360.q.a ##9	ENSGT00390000006885.a #10	ENSGT00940000154783.e.b ##12	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00410000025802.h.a.b ##17	ENSGT00410000025802.h.a.a ##17	ENSGT00530000063808.a #23	ENSGT01100000263493.a.a.a.b.a.a.b.a.b.a.b.a.b.b.b	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a.m #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34	ENSGT00940000153588.b #36	ENSGT00390000002034 #35	ENSGT00940000162426 #37	ENSGT00940000162843
Crab-eating macaque	MODERN SPECIES	175	SPRY3 (ENSMFAG00000014963)	ENSMFAG00000032659	RAB39B (ENSMFAG00000036188) #7	ENSMFAG00000064770	ENSMFAG00000050091	ENSMFAG00000058523	VBP1 (ENSMFAG00000032032) #8	ENSMFAG00000056611	BRCC3 (ENSMFAG00000031106) ##9	MTCP1 (ENSMFAG00000052287) #10	ENSMFAG00000045993	FUNDC2 (ENSMFAG00000038031) ##12	F8 (ENSMFAG00000039948) #13	ENSMFAG00000060522	IKBKG (ENSMFAG00000032230) #23	G6PD (ENSMFAG00000043207) #22	FAM3A (ENSMFAG00000041814) #24	SLC10A3 (ENSMFAG00000035989) #25	UBL4A (ENSMFAG00000000884) #26	LAGE3 (ENSMFAG00000004038) #27	PLXNA3 (ENSMFAG00000040837) #28	FAM50A (ENSMFAG00000021581) #29	GDI1 (ENSMFAG00000037198) #30	ATP6AP1 (ENSMFAG00000003619) #31	TAFAZZIN (ENSMFAG00000028691) #32	DNASE1L1 (ENSMFAG00000038787) #33	ENSMFAG00000040824 ##34	FLNA (ENSMFAG00000035790) #36	EMD (ENSMFAG00000045316) #35	TKTL1 (ENSMFAG00000031072) #37	ENSMFAG00000059786
Rhesus	MODERN SPECIES	327	FUNDC2 (ENSMMUG00000053499) ##12	ENSMMUG00000009476	H2AB1 (ENSMMUG00000059127)	F8 (ENSMMUG00000010245) #13	SMIM9 (ENSMMUG00000062044) #14	ENSMMUG00000060911	MPP1 (ENSMMUG00000005772) #15	DKC1 (ENSMMUG00000005768) #16	GAB3 (ENSMMUG00000015190)	ENSMMUG00000045112 ##17	ENSMMUG00000051337	IKBKG (ENSMMUG00000017277) #23	ENSMMUG00000051483	ENSMMUG00000017405 ##17	ENSMMUG00000052573 ##17	G6PD (ENSMMUG00000017409) #22	FAM3A (ENSMMUG00000009012) #24	ENSMMUG00000063935	UBL4A (ENSMMUG00000009015) #25	LAGE3 (ENSMMUG00000040340) #27	PLXNA3 (ENSMMUG00000005507) #28	FAM50A (ENSMMUG00000005505) #29	GDI1 (ENSMMUG00000005502) #30	ATP6AP1 (ENSMMUG00000005501) #31	TAFAZZIN (ENSMMUG00000005498) #32	DNASE1L1 (ENSMMUG00000050873) #33	RPL10 (ENSMMUG00000005494) #34	FLNA (ENSMMUG00000013668) #36	EMD (ENSMMUG00000013678) #35	TKTL1 (ENSMMUG00000013667) #37	ENSMMUG00000050314
Vervet Monkey	MODERN SPECIES	203	ENSCSAG00000006524 #8	BRCC3 (ENSCSAG00000006538) ##9	MTCP1 (ENSCSAG00000006547) #10	CMC4 (ENSCSAG00000006553) #11	FUNDC2 (ENSCSAG00000006563) ##12	ENSCSAG00000000519	ENSCSAG00000000520	ENSCSAG00000000521	F8 (ENSCSAG00000006668) #13	SMIM9 (ENSCSAG00000006693) #14	MPP1 (ENSCSAG00000006698) #15	DKC1 (ENSCSAG00000006706) #16	GAB3 (ENSCSAG00000006717)	ENSCSAG00000006721 ##17	IKBKG (ENSCSAG00000006727) #23	G6PD (ENSCSAG00000006732) #22	FAM3A (ENSCSAG00000006738) #24	SLC10A3 (ENSCSAG00000000522) #25	UBL4A (ENSCSAG00000006742) #26	ENSCSAG00000006746	PLXNA3 (ENSCSAG00000006756) #28	EMD (ENSCSAG00000006760) #35	FLNA (ENSCSAG00000006772) #36	TKTL1 (ENSCSAG00000006779) #37	TEX28 (ENSCSAG00000006786)	ENSCSAG00000006792	MECP2 (ENSCSAG00000006798)	IRAK1 (ENSCSAG00000006804)	TMEM187 (ENSCSAG00000000523)	HCFC1 (ENSCSAG00000006809)	RENBP (ENSCSAG00000006814)
Rhinopithecus	ANCESTRAL SPECIES	316											ENSGT00410000025802.h.a.b ##17	ENSGT00410000025802.h.a.a ##17	ENSGT00390000002566	ENSGT00530000063808.a #23	ENSGT00910000147580	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a.m #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34
Golden snub-nosed monkey	MODERN SPECIES	1454											CTAG2 (ENSRROG00000025938) ##17	ENSRROG00000034699 ##17	ENSRROG00000013818	ENSRROG00000035084	IKBKG (ENSRROG00000008677) #23	G6PD (ENSRROG00000033216) #22	ENSRROG00000033119	FAM3A (ENSRROG00000043376) #24	SLC10A3 (ENSRROG00000044112) #25	UBL4A (ENSRROG00000006560) #26	LAGE3 (ENSRROG00000012840) #27	PLXNA3 (ENSRROG00000044893) #28	FAM50A (ENSRROG00000038239) #29	ATP6AP1 (ENSRROG00000026809) #31	TAFAZZIN (ENSRROG00000037988) #32	DNASE1L1 (ENSRROG00000037526) #33	ENSRROG00000019247 #34
Black snub-nosed monkey	MODERN SPECIES	1888												ENSRBIG00000030147 ##17	ENSRBIG00000027585	IKBKG (ENSRBIG00000031684) #23	ENSRBIG00000029055	G6PD (ENSRBIG00000030157) #22	ENSRBIG00000028634	FAM3A (ENSRBIG00000025198) #24	SLC10A3 (ENSRBIG00000034698) #25	UBL4A (ENSRBIG00000023877) #26	ENSRBIG00000034128	PLXNA3 (ENSRBIG00000035203) #28	FAM50A (ENSRBIG00000037965) #29	GDI1 (ENSRBIG00000042799) #30	ATP6AP1 (ENSRBIG00000036700) #31	TAFAZZIN (ENSRBIG00000035066) #32	DNASE1L1 (ENSRBIG00000030074) #33	ENSRBIG00000042996 #34	ENSRBIG00000039019 #36	ENSRBIG00000037040 #35
Hominoidea	ANCESTRAL SPECIES	29	ENSGT00940000158132 #7	ENSGT00390000018904 #8	ENSGT00390000000360.q.a ##9	ENSGT00390000006885.a #10	ENSGT00390000012647 #11	ENSGT00940000154783.e.b ##12	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00410000025802.h.a.b ##17	ENSGT00410000025802.h.a.a ##17	ENSGT00390000002566	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a.m #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.a.b.e.a ##34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Gibbon	MODERN SPECIES	449	RAB39B (ENSNLEG00000014505) #7	VBP1 (ENSNLEG00000014475) #8	BRCC3 (ENSNLEG00000014460) ##9	MTCP1 (ENSNLEG00000014453) #10	CMC4 (ENSNLEG00000027271) #11	ENSNLEG00000014443 ##12	ENSNLEG00000018302	F8 (ENSNLEG00000014427) #13	SMIM9 (ENSNLEG00000014424) #14	ENSNLEG00000028336	ENSNLEG00000014423	MPP1 (ENSNLEG00000014358) #15	DKC1 (ENSNLEG00000014323) #16	GAB3 (ENSNLEG00000014318)	ENSNLEG00000014311 #23	ENSNLEG00000014300 #22	FAM3A (ENSNLEG00000030950) #24	SLC10A3 (ENSNLEG00000014293) #25	ENSNLEG00000014292 #26	LAGE3 (ENSNLEG00000028687) #27	PLXNA3 (ENSNLEG00000014273) #28	FAM50A (ENSNLEG00000014266) #29	GDI1 (ENSNLEG00000014222) #30	ATP6AP1 (ENSNLEG00000014184) #31	ENSNLEG00000014176 #32	DNASE1L1 (ENSNLEG00000014149) #33	ENSNLEG00000028143 ##34	EMD (ENSNLEG00000014117) #35	FLNA (ENSNLEG00000013842) #36	TKTL1 (ENSNLEG00000013813) #37	TEX28 (ENSNLEG00000013808)
Hominidae	ANCESTRAL SPECIES	8	ENSGT00940000158132 #7	ENSGT00390000018904 #8	ENSGT00390000000360.q.a ##9	ENSGT00390000006885.a #10	ENSGT00390000012647 #11	ENSGT00940000154783.e.b ##12	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00410000025802.h.b.b ##17	ENSGT00410000025802.h.a.a ##17	ENSGT00390000002566	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a.m #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.a.b.f ##34	ENSGT00390000003897.s.b.a.b.b #34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37
Orangutan	MODERN SPECIES	242	BRCC3 (ENSPPYG00000020899) ##9	MTCP1 (ENSPPYG00000035172) #10	CMC4 (ENSPPYG00000020898) #11	FUNDC2 (ENSPPYG00000020897) ##12	ENSPPYG00000038630	ENSPPYG00000035928	F8 (ENSPPYG00000020895) #13	SMIM9 (ENSPPYG00000020894) #14	MPP1 (ENSPPYG00000020893) #15	DKC1 (ENSPPYG00000020892) #16	GAB3 (ENSPPYG00000020891)	CTAG2 (ENSPPYG00000020890) ##17	ENSPPYG00000020888 ##17	ENSPPYG00000020887	IKBKG (ENSPPYG00000020886) #23	G6PD (ENSPPYG00000020885) #22	FAM3A (ENSPPYG00000020884) #24	SLC10A3 (ENSPPYG00000020883) #25	UBL4A (ENSPPYG00000020882) #26	LAGE3 (ENSPPYG00000033247) #27	FAM50A (ENSPPYG00000020879) #29	GDI1 (ENSPPYG00000020878) #30	ATP6AP1 (ENSPPYG00000020877) #31	TAFAZZIN (ENSPPYG00000020876) #32	DNASE1L1 (ENSPPYG00000020875) #33	RPL10 (ENSPPYG00000020874) #34	EMD (ENSPPYG00000020873) #35	FLNA (ENSPPYG00000020871) #36	TKTL1 (ENSPPYG00000020870) #37	TEX28 (ENSPPYG00000020869)	ENSPPYG00000020867
Homo/Pan/Gorilla group	DUPLICATION
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	9	ENSGT00390000006885.a #10	ENSGT00390000012647 #11	ENSGT00940000154783.e.b ##12	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00410000025802.h.b.b ##17	ENSGT00530000063801.a.n	ENSGT00410000025802.h.b.a ##17	ENSGT00410000025802.h.a.a ##17	ENSGT00530000063808.a #23	ENSGT00530000063435.a.i #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a.m #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.a.b.f ##34	ENSGT00530000063687.b.b.b.f	ENSGT00390000003897.s.b.a.a.b.e.a ##34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36
Gorilla	MODERN SPECIES	523	CMC4 (ENSGGOG00000011528) #11	FUNDC2 (ENSGGOG00000026954) ##12	ENSGGOG00000003617	F8 (ENSGGOG00000003600) #13	SMIM9 (ENSGGOG00000005354) #14	ENSGGOG00000025061	MPP1 (ENSGGOG00000001049) #15	DKC1 (ENSGGOG00000001045) #16	GAB3 (ENSGGOG00000001042)	ENSGGOG00000025843 #23	ENSGGOG00000043272 ##17	ENSGGOG00000022830 ##17	ENSGGOG00000040976	ENSGGOG00000025927	IKBKG (ENSGGOG00000004896) #23	G6PD (ENSGGOG00000004890) #22	ENSGGOG00000005270 #24	SLC10A3 (ENSGGOG00000013520) #25	ENSGGOG00000013509 #26	LAGE3 (ENSGGOG00000013507) #27	PLXNA3 (ENSGGOG00000013493) #28	ENSGGOG00000013484 #29	GDI1 (ENSGGOG00000013474) #30	ATP6AP1 (ENSGGOG00000013466) #31	TAZ (ENSGGOG00000011947) #32	DNASE1L1 (ENSGGOG00000000132) #33	ENSGGOG00000000131 ##34	EMD (ENSGGOG00000009388) #35	FLNA (ENSGGOG00000004199) #36	TKTL1 (ENSGGOG00000004191) #37	TEX28 (ENSGGOG00000004188)
Homo/Pan group	ANCESTRAL SPECIES	9	ENSGT00390000018904 #8	ENSGT00390000000360.q.a ##9	ENSGT00390000006885.a #10	ENSGT00390000012647 #11	ENSGT00940000154783.e.b ##12	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00410000025802.h.b.b ##17	ENSGT00530000063801.a.n	ENSGT00410000025802.h.b.a ##17	ENSGT00410000025802.h.a.a ##17	ENSGT00530000063808.a #23	ENSGT00530000063435.a.i #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a.m #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.a.b.f ##34	ENSGT00530000063687.b.b.b.f	ENSGT00390000003897.s.b.b ##34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36
Pan	ANCESTRAL SPECIES	43	ENSGT00390000000360.q.a ##9	ENSGT00390000006885.a #10	ENSGT00390000012647 #11	ENSGT00940000154783.e.b ##12	ENSGT00390000016992.bb	ENSGT00940000163020	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00390000011549.e	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00410000025802.h.b.b ##17	ENSGT00390000002566	ENSGT00530000063808.a #23	ENSGT00530000063435.a.i #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a.m #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33
Bonobo	MODERN SPECIES	369	VBP1 (ENSPPAG00000036017) #8	BRCC3 (ENSPPAG00000039895) ##9	MTCP1 (ENSPPAG00000029273) #10	CMC4 (ENSPPAG00000030202) #11	FUNDC2 (ENSPPAG00000028980) ##12	ENSPPAG00000022594	F8 (ENSPPAG00000033513) #13	SMIM9 (ENSPPAG00000035097) #14	ENSPPAG00000031767	MPP1 (ENSPPAG00000040588) #15	DKC1 (ENSPPAG00000023820) #16	GAB3 (ENSPPAG00000033506)	ENSPPAG00000030022 ##17	ENSPPAG00000024171	IKBKG (ENSPPAG00000019041) #23	G6PD (ENSPPAG00000030117) #22	ENSPPAG00000028567 #24	SLC10A3 (ENSPPAG00000036137) #25	ENSPPAG00000035975 #26	LAGE3 (ENSPPAG00000028018) #27	PLXNA3 (ENSPPAG00000037363) #28	ENSPPAG00000043116 #29	GDI1 (ENSPPAG00000027756) #30	ATP6AP1 (ENSPPAG00000036293) #31	TAFAZZIN (ENSPPAG00000036682) #32	DNASE1L1 (ENSPPAG00000012889) #33	ENSPPAG00000034160 ##34	MECP2 (ENSPPAG00000034020)	ENSPPAG00000042175	IRAK1 (ENSPPAG00000040186)	TMEM187 (ENSPPAG00000007444)
Chimpanzee	MODERN SPECIES	972	F8 (ENSPTRG00000022455) #13	SMIM9 (ENSPTRG00000028167) #14	ENSPTRG00000046688	MPP1 (ENSPTRG00000022450) #15	DKC1 (ENSPTRG00000022449) #16	GAB3 (ENSPTRG00000022447)	ENSPTRG00000022446 ##17	ENSPTRG00000045486 #23	ENSPTRG00000052333	ENSPTRG00000043176	ENSPTRG00000040429 ##17	ENSPTRG00000022445 ##17	ENSPTRG00000044790	ENSPTRG00000050406	IKBKG (ENSPTRG00000040677) #23	G6PD (ENSPTRG00000022443) #22	FAM3A (ENSPTRG00000022442) #24	SLC10A3 (ENSPTRG00000051548) #25	UBL4A (ENSPTRG00000022440) #26	LAGE3 (ENSPTRG00000022439) #27	PLXNA3 (ENSPTRG00000022438) #28	FAM50A (ENSPTRG00000022437) #29	GDI1 (ENSPTRG00000028169) #30	ATP6AP1 (ENSPTRG00000022435) #31	TAFAZZIN (ENSPTRG00000022434) #32	DNASE1L1 (ENSPTRG00000042704) #33	RPL10 (ENSPTRG00000043378) ##34	TKTL1 (ENSPTRG00000022429) #37	TEX28 (ENSPTRG00000022426)	OPN1LW (ENSPTRG00000022427)	MECP2 (ENSPTRG00000048003)
Human	MODERN SPECIES	1827	BRCC3 (ENSG00000185515) ##9	MTCP1 (ENSG00000214827) #10	CMC4 (ENSG00000182712) #11	FUNDC2 (ENSG00000165775) ##12	F8A1 (ENSG00000288722)	H2AB1 (ENSG00000274183)	F8 (ENSG00000185010) #13	SMIM9 (ENSG00000203870) #14	MPP1 (ENSG00000130830) #15	DKC1 (ENSG00000130826) #16	GAB3 (ENSG00000160219)	CTAG2 (ENSG00000126890) ##17	CTAG1B (ENSG00000184033) ##17	CTAG1A (ENSG00000268651) ##17	IKBKG (ENSG00000269335) #23	G6PD (ENSG00000160211) #22	FAM3A (ENSG00000071889) #24	SLC10A3 (ENSG00000126903) #25	UBL4A (ENSG00000102178) #26	LAGE3 (ENSG00000196976) #27	PLXNA3 (ENSG00000130827) #28	FAM50A (ENSG00000071859) #29	GDI1 (ENSG00000203879) #30	ATP6AP1 (ENSG00000071553) #31	TAFAZZIN (ENSG00000102125) #32	DNASE1L1 (ENSG00000013563) #33	RPL10 (ENSG00000147403) ##34	EMD (ENSG00000102119) #35	FLNA (ENSG00000196924) #36	TKTL1 (ENSG00000007350) #37	TEX28 (ENSG00000278057)
Homo/Pan/Gorilla group	ANCESTRAL SPECIES																	ENSGT00530000063435.a.j #22
Homo/Pan group	ANCESTRAL SPECIES																	ENSGT00530000063435.a.j #22
Pan	ANCESTRAL SPECIES																	ENSGT00530000063435.a.j #22
Chimpanzee	MODERN SPECIES	888																ENSPTRG00000042671 #22
Platyrrhini	ANCESTRAL SPECIES	42	ENSGT00940000161397	ENSGT00940000158132 #7	ENSGT00390000018904 #8	ENSGT00950000183068.a.a	ENSGT00390000000360.q.a ##9	ENSGT00390000006885.a #10	ENSGT00390000012647.g #11	ENSGT00940000154783.f #12	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00410000025802.h.b ##17	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b.n #34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426.a #37	ENSGT00940000162843
Mas night monkey	MODERN SPECIES	1311	SPRY3 (ENSANAG00000032737)	TMLHE (ENSANAG00000026227)	ENSANAG00000030737	CLIC2 (ENSANAG00000033680)	RAB39B (ENSANAG00000031228) #7	ENSANAG00000027213 #8	BRCC3 (ENSANAG00000024915) #9	MTCP1 (ENSANAG00000028247) #10	ENSANAG00000029218 #11	ENSANAG00000030681 #12	F8 (ENSANAG00000025258) #13	MPP1 (ENSANAG00000034369) #15	DKC1 (ENSANAG00000022732) #16	GAB3 (ENSANAG00000032427)	IKBKG (ENSANAG00000032209) #23	G6PD (ENSANAG00000031927) #22	FAM3A (ENSANAG00000028348) #24	SLC10A3 (ENSANAG00000031182) #25	ENSANAG00000029762 #26	LAGE3 (ENSANAG00000032507) #27	PLXNA3 (ENSANAG00000027264) #28	FAM50A (ENSANAG00000031398) #29	GDI1 (ENSANAG00000028381) #30	ATP6AP1 (ENSANAG00000036139) #31	TAFAZZIN (ENSANAG00000022392) #32	DNASE1L1 (ENSANAG00000019417) #33	ENSANAG00000036053 ##34
Cebidae	ANCESTRAL SPECIES	27	ENSGT00940000161397	ENSGT00940000158132 #7	ENSGT00390000018904 #8	ENSGT00950000183068.a.a	ENSGT00390000000360.q.a ##9	ENSGT00390000006885.a #10	ENSGT00390000012647.g #11	ENSGT00940000154783.e.a.a.a ##12	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00410000025802.h.b ##17	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b.n #34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426.a #37	ENSGT00940000162843
Marmoset	MODERN SPECIES	78	VBP1 (ENSCJAG00000004338) #8	ENSCJAG00000085645	BRCC3 (ENSCJAG00000004308) ##9	MTCP1 (ENSCJAG00000042284) #10	CMC4 (ENSCJAG00000078864) #11	ENSCJAG00000004287 ##12	ENSCJAG00000079192	ENSCJAG00000076498	F8 (ENSCJAG00000004258) #13	SMIM9 (ENSCJAG00000004256) #14	MPP1 (ENSCJAG00000004227) #15	DKC1 (ENSCJAG00000004210) #16	ENSCJAG00000082602	GAB3 (ENSCJAG00000016753)	IKBKG (ENSCJAG00000016764) #23	G6PD (ENSCJAG00000016775) #22	FAM3A (ENSCJAG00000016787) #24	SLC10A3 (ENSCJAG00000077479) #25	UBL4A (ENSCJAG00000074416) #26	LAGE3 (ENSCJAG00000041329) #27	PLXNA3 (ENSCJAG00000016816) #28	FAM50A (ENSCJAG00000063509) #29	GDI1 (ENSCJAG00000016910) #30	ATP6AP1 (ENSCJAG00000040642) #31	ENSCJAG00000016995 #32	DNASE1L1 (ENSCJAG00000011800) #33	ENSCJAG00000011822 #34	EMD (ENSCJAG00000011853) #35	FLNA (ENSCJAG00000034881) #36	TKTL1 (ENSCJAG00000014368) #37	TEX28 (ENSCJAG00000042631)
Cebidae_a	ANCESTRAL SPECIES	78	ENSGT00390000016992	ENSGT00940000161397	ENSGT00940000158132 #7	ENSGT00390000018904 #8	ENSGT00390000000360.q.a ##9	ENSGT00390000006885.a #10	ENSGT00390000012647.g #11	ENSGT00940000154783.e.a.a.a ##12	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00410000025802.h.b ##17	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b.n #34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426.a #37	ENSGT00940000162843
Capuchin	DUPLICATION
Capuchin	MODERN SPECIES	862														ENSCCAG00000030506 ##17	IKBKG (ENSCCAG00000030204) #23	G6PD (ENSCCAG00000033900) #22	ENSCCAG00000025941	FAM3A (ENSCCAG00000030432) #24	SLC10A3 (ENSCCAG00000020474) #25	UBL4A (ENSCCAG00000033285) #26	LAGE3 (ENSCCAG00000021965) #27	PLXNA3 (ENSCCAG00000029210) #28	FAM50A (ENSCCAG00000022089) #29	GDI1 (ENSCCAG00000023267) #30	ATP6AP1 (ENSCCAG00000026799) #31	TAZ (ENSCCAG00000033091) #32	DNASE1L1 (ENSCCAG00000038109) #33	ENSCCAG00000024992 ##34
Capuchin	MODERN SPECIES	184															SLITRK6 (ENSCCAG00000011148)	ENSCCAG00000033079 #22	ENSCCAG00000027934	SLITRK1 (ENSCCAG00000031703)	ENSCCAG00000031722
Bolivian squirrel monkey	DUPLICATION
Bolivian squirrel monkey	MODERN SPECIES	236		CLIC2 (ENSSBOG00000022219)	RAB39B (ENSSBOG00000025110) #7	ENSSBOG00000022626 #8	BRCC3 (ENSSBOG00000035771) ##9	MTCP1 (ENSSBOG00000021241) #10	CMC4 (ENSSBOG00000033964) #11	ENSSBOG00000034180 ##12	F8 (ENSSBOG00000002240) #13	SMIM9 (ENSSBOG00000018626) #14	MPP1 (ENSSBOG00000026026) #15	DKC1 (ENSSBOG00000033746) #16	GAB3 (ENSSBOG00000027441)	ENSSBOG00000031845 ##17	IKBKG (ENSSBOG00000033453) #23	G6PD (ENSSBOG00000003239) #22	FAM3A (ENSSBOG00000030279) #24	SLC10A3 (ENSSBOG00000027728) #25	UBL4A (ENSSBOG00000030369) #26	LAGE3 (ENSSBOG00000024470) #27	PLXNA3 (ENSSBOG00000034877) #28	FAM50A (ENSSBOG00000029861) #29	GDI1 (ENSSBOG00000021247) #30	ATP6AP1 (ENSSBOG00000027327) #31	TAFAZZIN (ENSSBOG00000029961) #32	ENSSBOG00000033124	DNASE1L1 (ENSSBOG00000028977) #33	ENSSBOG00000025724 #34	EMD (ENSSBOG00000027560) #35	FLNA (ENSSBOG00000035541) #36	TKTL1 (ENSSBOG00000020176) #37
Bolivian squirrel monkey	MODERN SPECIES	84														ENSSBOG00000019639	SLITRK6 (ENSSBOG00000019761)	ENSSBOG00000025325 #22	SLITRK1 (ENSSBOG00000009738)	SPRY2 (ENSSBOG00000036389)	ENSSBOG00000023804	NDFIP2 (ENSSBOG00000026677)	ENSSBOG00000023146	RBM26 (ENSSBOG00000031813)	ENSSBOG00000001872	OBI1 (ENSSBOG00000032722)	POU4F1 (ENSSBOG00000020314)	EDNRB (ENSSBOG00000034061)	SLAIN1 (ENSSBOG00000027553)	SCEL (ENSSBOG00000014091)	MYCBP2 (ENSSBOG00000028707)	FBXL3 (ENSSBOG00000026201)	CLN5 (ENSSBOG00000029854)
Tarsier	MODERN SPECIES	3278															IKBKG (ENSTSYG00000034417) #23	G6PD (ENSTSYG00000026577) #22
Strepsirrhini	ANCESTRAL SPECIES	45															ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Lemuriformes	ANCESTRAL SPECIES	60															ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Mouse lemur	MODERN SPECIES	169	ENSMICG00000027784	ENSMICG00000033041	F9 (ENSMICG00000016427)	MCF2 (ENSMICG00000016443)	ENSMICG00000037295	ATP11C (ENSMICG00000017620)	CXorf66 (ENSMICG00000042583)	ENSMICG00000043090	ENSMICG00000044078	ENSMICG00000043299	ENSMICG00000045052	ENSMICG00000028378	ENSMICG00000041505 #17	ENSMICG00000031449	IKBKG (ENSMICG00000035937) #23	G6PD (ENSMICG00000016481) #22	FAM3A (ENSMICG00000016470) #24	SLC10A3 (ENSMICG00000016468) #25	UBL4A (ENSMICG00000016459) #26	PLXNA3 (ENSMICG00000016439) #28	FAM50A (ENSMICG00000016428) #29	GDI1 (ENSMICG00000016418) #30	ATP6AP1 (ENSMICG00000016405) #31	TAFAZZIN (ENSMICG00000030766) #32	DNASE1L1 (ENSMICG00000035242) #33	ENSMICG00000033705 #34	EMD (ENSMICG00000004682) #35	FLNA (ENSMICG00000004663) #36	GAB3 (ENSMICG00000000264)	ENSMICG00000002818 #16	MPP1 (ENSMICG00000002828) #15
Lemuriformes_a	ANCESTRAL SPECIES	110															ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Greater bamboo lemur	MODERN SPECIES	1160															IKBKG (ENSPSMG00000000861) #23	G6PD (ENSPSMG00000000786) #22	FAM3A (ENSPSMG00000000661) #24	UBL4A (ENSPSMG00000000561) #26	LAGE3 (ENSPSMG00000000544) #27	ENSPSMG00000000535 #28	ENSPSMG00000000524 #28	FAM50A (ENSPSMG00000000520) #29
Coquerels sifaka	MODERN SPECIES	882															IKBKG (ENSPCOG00000026138) #23	G6PD (ENSPCOG00000028512) #22	FAM3A (ENSPCOG00000016869) #24	SLC10A3 (ENSPCOG00000025772) #25	UBL4A (ENSPCOG00000022735) #26	LAGE3 (ENSPCOG00000027993) #27	PLXNA3 (ENSPCOG00000015843) #28	ENSPCOG00000024061 #29	GDI1 (ENSPCOG00000015358) #30	ATP6AP1 (ENSPCOG00000015508) #31	TAFAZZIN (ENSPCOG00000023186) #32	DNASE1L1 (ENSPCOG00000022635) #33	ENSPCOG00000027122 #34	EMD (ENSPCOG00000015697) #35	FLNA (ENSPCOG00000011059) #36	TKTL1 (ENSPCOG00000023105) #37	ENSPCOG00000015866
Bushbaby	MODERN SPECIES	364												ENSOGAG00000032447 #20	ENSOGAG00000027129 #19	ENSOGAG00000031211	IKBKG (ENSOGAG00000024983) #23	G6PD (ENSOGAG00000033296) #22	FAM3A (ENSOGAG00000016669) #24	SLC10A3 (ENSOGAG00000002637) #25	UBL4A (ENSOGAG00000030091) #26	PLXNA3 (ENSOGAG00000008330) #28	FAM50A (ENSOGAG00000008322) #29	GDI1 (ENSOGAG00000008317) #30	ATP6AP1 (ENSOGAG00000008310) #31	TAFAZZIN (ENSOGAG00000008304) #32	DNASE1L1 (ENSOGAG00000000100) #33	ENSOGAG00000000099 #34	EMD (ENSOGAG00000029264) #35	FLNA (ENSOGAG00000015265) #36	ENSOGAG00000017264	ENSOGAG00000027452	TKTL1 (ENSOGAG00000000901) #37
Euarchontoglires_A	ANCESTRAL SPECIES	11	ENSGT00390000006885.a #10	ENSGT00390000012647 #11	ENSGT00940000154783.f #12	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00390000001700.a.b.b #18	ENSGT00390000000062.x.b	ENSGT01050000244815.B.a.a #20	ENSGT00410000025802.g.b #17	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Tree shrew	MODERN SPECIES	3679																G6PD (ENSTBEG00000016360) #22	FAM3A (ENSTBEG00000016091) #24
Glires	ANCESTRAL SPECIES	10	ENSGT00390000006885.a #10	ENSGT00390000012647.d #11	ENSGT00940000154783.f #12	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00390000001700.a.b.b #18	ENSGT00390000000062.x.b	ENSGT01050000244815.B.a.a #20	ENSGT00410000025802.g.b #17	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Lagomorpha	ANCESTRAL SPECIES	103															ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843	ENSGT01030000234549.a.a.a.b	ENSGT00530000063687.b.b.b	ENSGT00940000160502
Rabbit	MODERN SPECIES	549															IKBKG (ENSOCUG00000007873) #23	G6PD (ENSOCUG00000007866) #22	FAM3A (ENSOCUG00000015663) #24	SLC10A3 (ENSOCUG00000022433) #25	LAGE3 (ENSOCUG00000028990) #27	PLXNA3 (ENSOCUG00000015623) #28	FAM50A (ENSOCUG00000017644) #29	GDI1 (ENSOCUG00000017639) #30	ENSOCUG00000017631 #31	TAFAZZIN (ENSOCUG00000000885) #32	RA_m006_jsm7BED4f (ENSOCUG00000024511) #36	EMD (ENSOCUG00000000882) #35	FLNA (ENSOCUG00000000880) #36	TKTL1 (ENSOCUG00000000883) #37	TEX28 (ENSOCUG00000021000)	OPN1MW (ENSOCUG00000011466)	MECP2 (ENSOCUG00000013147)
Pika	MODERN SPECIES	2591																ENSOPRG00000001213 #22
Rodentia	ANCESTRAL SPECIES	10	ENSGT00390000006885.a #10	ENSGT00390000012647.d #11	ENSGT00940000154783.f #12	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00390000001700.a.b.b #18	ENSGT00390000000062.x.b	ENSGT01050000244815.B.a.a #20	ENSGT00410000025802.g.b #17	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Rodentia_B	ANCESTRAL SPECIES	16	ENSGT00940000158132 #7	ENSGT00390000018904 #8	ENSGT00390000000360.r.b #9	ENSGT00390000006885.a #10	ENSGT00390000012647.d #11	ENSGT00940000154783.f #12	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT01100000263574.b.j #19	ENSGT01050000244815.B.a.a #20	ENSGT00410000025802.g.b #17	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Myomorpha	ANCESTRAL SPECIES	6	ENSGT00940000158132 #7	ENSGT00390000018904 #8	ENSGT00390000000360.r.b #9	ENSGT00390000006885.a #10	ENSGT00390000012647.d #11	ENSGT00940000154783.f #12	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT01100000263574.b.j #19	ENSGT01050000244815.B.a.a #20	ENSGT00410000025802.g.b #17	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Muroidea	ANCESTRAL SPECIES	13	ENSGT00940000158132 #7	ENSGT00390000018904 #8	ENSGT00390000000360.r.b #9	ENSGT00390000006885.a #10	ENSGT00390000012647.d #11	ENSGT00940000154783.f #12	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT01100000263574.b.j #19	ENSGT01050000244815.B.a.a #20	ENSGT00410000025802.g.b #17	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Muroidea_A	ANCESTRAL SPECIES	7	ENSGT00940000158132 #7	ENSGT00390000018904 #8	ENSGT00390000000360.r.b.a.a #9	ENSGT00390000006885.a #10	ENSGT00390000012647.d #11	ENSGT00940000154783.f #12	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT01100000263574.b.j #19	ENSGT01050000244815.B.a.a #20	ENSGT00410000025802.g.b.q.a #17	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Cricetidae	ANCESTRAL SPECIES	8	ENSGT00940000158132 #7	ENSGT00390000018904 #8	ENSGT00390000000360.r.b.a.a #9	ENSGT00390000006885.a #10	ENSGT00390000012647.d #11	ENSGT00940000154783.f.db.b #12	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT01050000244815.B.a.a #20	ENSGT01100000263574.b.j #19	ENSGT00410000025802.g.b.q.a #17	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Cricetinae	ANCESTRAL SPECIES	46	ENSGT00530000063582.a	ENSGT00940000158132 #7	ENSGT00390000018904 #8	ENSGT00390000000360.r.b.a.a #9	ENSGT00390000006885.a #10	ENSGT00390000012647.d #11	ENSGT00940000154783.f.db.b #12	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00410000025802.g.b.q.a #17	ENSGT01050000244815.B.a.a #20	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162843	ENSGT01030000234549.a.a.a.b
Chinese hamster chok1gshd	MODERN SPECIES	16	Rab39b (ENSCGRG00001022502) #7	ENSCGRG00001012855 #8	Brcc3 (ENSCGRG00001000059) #9	Mtcp1 (ENSCGRG00001021448) #10	Cmc4 (ENSCGRG00001024106) #11	Fundc2 (ENSCGRG00001005074) #12	F8 (ENSCGRG00001018172) #13	Smim9 (ENSCGRG00001020847) #14	Mpp1 (ENSCGRG00001000334) #15	ENSCGRG00001014574 #16	Gab3 (ENSCGRG00001024780)	ENSCGRG00001000852 #17	ENSCGRG00001018213	Or7r1 (ENSCGRG00001002331) #20	Ikbkg (ENSCGRG00001023852) #23	G6PDH (ENSCGRG00001009805) #22	Fam3a (ENSCGRG00001017590) #24	Ubl4a (ENSCGRG00001024649) #26	Lage3 (ENSCGRG00001006943) #27	Plxna3 (ENSCGRG00001018950) #28	Fam50a (ENSCGRG00001022147) #29	Gdi1 (ENSCGRG00001020747) #30	Atp6ap1 (ENSCGRG00001015351) #31	TAZ (ENSCGRG00001016189) #32	DNASE1L1 (ENSCGRG00001019882) #33	ENSCGRG00001008387 #34	Emd (ENSCGRG00001023962) #35	Flna (ENSCGRG00001013154) #36	ENSCGRG00001010950	Tex28 (ENSCGRG00001014288)	Opn1mw (ENSCGRG00001024157)
Golden Hamster	MODERN SPECIES	857															Ikbkg (ENSMAUG00000008491) #23	ENSMAUG00000008547 #22	Fam3a (ENSMAUG00000009961) #24	Slc10a3 (ENSMAUG00000005496) #25	Ubl4a (ENSMAUG00000019612) #26	Lage3 (ENSMAUG00000021750) #27	Plxna3 (ENSMAUG00000019645) #28	Fam50a (ENSMAUG00000020359) #29	Gdi1 (ENSMAUG00000001476) #30	Atp6ap1 (ENSMAUG00000014514) #31	Tafazzin (ENSMAUG00000001836) #32	Dnase1l1 (ENSMAUG00000005714) #33	ENSMAUG00000013615 #34	Emd (ENSMAUG00000016655) #35	Tex28 (ENSMAUG00000011775)	Opn1mw (ENSMAUG00000017549)	Mecp2 (ENSMAUG00000018195)
Cricetidae_B	ANCESTRAL SPECIES	28	ENSGT00940000158132 #7	ENSGT00390000018904 #8	ENSGT00390000000360.r.b.a.a #9	ENSGT00390000006885.a #10	ENSGT00390000012647.d #11	ENSGT00940000154783.f.db.b #12	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT01050000244815.B.a.a #20	ENSGT01100000263574.b.j #19	ENSGT00410000025802.g.b.q.a #17	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Northern American deer mouse	MODERN SPECIES	475	Mtcp1 (ENSPEMG00000030977) #10	Cmc4 (ENSPEMG00000024388) #11	ENSPEMG00000026725 #12	F8 (ENSPEMG00000014119) #13	Smim9 (ENSPEMG00000010945) #14	Mpp1 (ENSPEMG00000014261) #15	ENSPEMG00000022395	Dkc1 (ENSPEMG00000013348) #16	Gab3 (ENSPEMG00000012634)	Or13ae2 (ENSPEMG00000025767) #19	Or7r1 (ENSPEMG00000009130) #20	ENSPEMG00000026245 #17	ENSPEMG00000027888 ##17	ENSPEMG00000029875 #17	Ikbkg (ENSPEMG00000031110) #23	ENSPEMG00000017532 #22	Fam3a (ENSPEMG00000004757) #24	Ubl4a (ENSPEMG00000027881) #26	Lage3 (ENSPEMG00000011229) #27	Plxna3 (ENSPEMG00000012781) #28	Fam50a (ENSPEMG00000001727) #29	Gdi1 (ENSPEMG00000010952) #30	Atp6ap1 (ENSPEMG00000009724) #31	Tafazzin (ENSPEMG00000007822) #32	Dnase1l1 (ENSPEMG00000013008) #33	ENSPEMG00000015703 ##34	Emd (ENSPEMG00000012081) #35	Flna (ENSPEMG00000009562) #36	Tktl1 (ENSPEMG00000012644) #37	Tex28 (ENSPEMG00000009005)	Opn1mw (ENSPEMG00000010994)
Prairie vole	MODERN SPECIES	168	Rab39b (ENSMOCG00000006994) #7	Vbp1 (ENSMOCG00000013440) #8	ENSMOCG00000000841 #9	Cmc4 (ENSMOCG00000019858) #11	Mtcp1 (ENSMOCG00000002450) #10	Fundc2 (ENSMOCG00000013641) #12	F8 (ENSMOCG00000006178) #13	ENSMOCG00000001114	Smim9 (ENSMOCG00000003619) #14	Mpp1 (ENSMOCG00000000082) #15	ENSMOCG00000001169 #16	Gab3 (ENSMOCG00000015626)	Or7r1 (ENSMOCG00000002349) #20	ENSMOCG00000017711 #17	Ikbkg (ENSMOCG00000011244) #23	ENSMOCG00000015421 #22	Fam3a (ENSMOCG00000016025) #24	Slc10a3 (ENSMOCG00000008789) #25	Ubl4a (ENSMOCG00000000785) #26	ENSMOCG00000002473 #27	Plxna3 (ENSMOCG00000002375) #28	Fam50a (ENSMOCG00000015890) #29	Gdi1 (ENSMOCG00000006575) #30	Atp6ap1 (ENSMOCG00000001026) #31	Tafazzin (ENSMOCG00000010108) #32	Dnase1l1 (ENSMOCG00000017402) #33	ENSMOCG00000013831 #34	Emd (ENSMOCG00000003977) #35	Flna (ENSMOCG00000007826) #36	Tex28 (ENSMOCG00000011491)	ENSMOCG00000017630
Murinae	ANCESTRAL SPECIES	14	ENSGT00390000012647.d #11	ENSGT00940000154783.f #12	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00390000001700.a.b.b #18	ENSGT00390000000062.x.b.l.b	ENSGT00390000000062.x.b.k.b	ENSGT00390000016992	ENSGT01100000263574.b.j #19	ENSGT01050000244815.B.a.a #20	ENSGT00410000025802.g.b.q.a #17	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.a.b ##34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Mus	DUPLICATION
Mus	ANCESTRAL SPECIES	9	ENSGT00940000158132 #7	ENSGT00390000018904 #8	ENSGT00390000000360.r.b.a.a #9	ENSGT00390000006885.a #10	ENSGT00390000012647.d #11	ENSGT00940000154783.f #12	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT01100000263574.b.j #19	ENSGT01050000244815.B.a.a #20	ENSGT00410000025802.g.b.q.a #17	ENSGT00530000063808.a #23	ENSGT00530000063435.a.o #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.a.b ##34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Mus_A	ANCESTRAL SPECIES	15	ENSGT00390000006885.a #10	ENSGT00390000012647.d #11	ENSGT00940000154783.f #12	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00390000001700.a.b.b #18	ENSGT00390000000062.x.b.l.b	ENSGT00390000000062.x.b.k.b	ENSGT01100000263574.b.j #19	ENSGT01050000244815.B.a.a #20	ENSGT00410000025802.g.b.q.a #17	ENSGT00530000063808.a #23	ENSGT00530000063435.a.o #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.a.b ##34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Mus_B	ANCESTRAL SPECIES	14	ENSGT00390000018904 #8	ENSGT00390000000360.r.b.a.a #9	ENSGT00390000006885.a #10	ENSGT00390000012647.d #11	ENSGT00940000154783.f #12	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00390000001700.a.b.b.o.a ##18	ENSGT01100000263574.b.j #19	ENSGT01050000244815.B.a.a #20	ENSGT00410000025802.g.b.q.a #17	ENSGT00530000063808.a #23	ENSGT00530000063435.a.o #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Mouse	MODERN SPECIES	37	Brcc3 (ENSMUSG00000031201) #9	Mtcp1 (ENSMUSG00000031200) #10	Cmc4 (ENSMUSG00000090110) #11	Fundc2 (ENSMUSG00000031198) #12	F8 (ENSMUSG00000031196) #13	Smim9 (ENSMUSG00000073094) #14	Mpp1 (ENSMUSG00000031402) #15	Dkc1 (ENSMUSG00000031403) #16	Gab3 (ENSMUSG00000032750)	Pwwp4d (ENSMUSG00000079531) ##18	Ctag2l2 (ENSMUSG00000079532) #17	Pwwp4c (ENSMUSG00000079534) ##18	Or13ae2 (ENSMUSG00000051706) #19	Or7r1 (ENSMUSG00000043715) #20	Ctag2l1 (ENSMUSG00000079536) #17	G6pdx (ENSMUSG00000031400) #22	Ikbkg (ENSMUSG00000004221) #23	Fam3a (ENSMUSG00000031399) #24	Slc10a3 (ENSMUSG00000032806) #25	Ubl4a (ENSMUSG00000015290) #26	Lage3 (ENSMUSG00000015289) #27	Plxna3 (ENSMUSG00000031398) #28	Fam50a (ENSMUSG00000001962) #29	Gdi1 (ENSMUSG00000015291) #30	Atp6ap1 (ENSMUSG00000019087) #31	Tafazzin (ENSMUSG00000009995) #32	Dnase1l1 (ENSMUSG00000019088) #33	Rpl10 (ENSMUSG00000008682) ##34	Emd (ENSMUSG00000001964) #35	Flna (ENSMUSG00000031328) #36	Tktl1 (ENSMUSG00000031397) #37
Mus_C	ANCESTRAL SPECIES	27	ENSGT00950000183097.a.a.a	ENSGT00940000158132 #7	ENSGT00390000018904 #8	ENSGT00390000000360.r.b.a.a #9	ENSGT00390000006885.a #10	ENSGT00390000012647.d #11	ENSGT00940000154783.f #12	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT01100000263574.b.j #19	ENSGT01050000244815.B.a.a #20	ENSGT00410000025802.g.b.q.a #17	ENSGT00530000063808.a #23	ENSGT00530000063435.a.o #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Steppe mouse	MODERN SPECIES	1616															Ikbkg (ENSMSIG00000001456) #23	G6pdx (ENSMSIG00000001388) #22
spretus	MODERN SPECIES	19	Rab39b (MGP_SPRETEiJ_G0034360) #7	Vbp1 (MGP_SPRETEiJ_G0034359) #8	Brcc3 (MGP_SPRETEiJ_G0034358) #9	Mtcp1 (MGP_SPRETEiJ_G0034357) #10	Cmc4 (MGP_SPRETEiJ_G0034356) #11	Fundc2 (MGP_SPRETEiJ_G0034355) #12	F8 (MGP_SPRETEiJ_G0034354) #13	Smim9 (MGP_SPRETEiJ_G0034353) #14	Mpp1 (MGP_SPRETEiJ_G0034352) #15	Dkc1 (MGP_SPRETEiJ_G0034351) #16	MGP_SPRETEiJ_G0034348 #17	MGP_SPRETEiJ_G0034347 #18	Or13ae2 (MGP_SPRETEiJ_G0034346) #19	Or7r1 (MGP_SPRETEiJ_G0034345) #20	MGP_SPRETEiJ_G0034344 #21	G6pdx (MGP_SPRETEiJ_G0034343) #22	Ikbkg (MGP_SPRETEiJ_G0034342) #23	Fam3a (MGP_SPRETEiJ_G0034341) #24	Slc10a3 (MGP_SPRETEiJ_G0034340) #25	Ubl4a (MGP_SPRETEiJ_G0034339) #26	Lage3 (MGP_SPRETEiJ_G0034338) #27	Plxna3 (MGP_SPRETEiJ_G0034337) #28	Fam50a (MGP_SPRETEiJ_G0034336) #29	Gdi1 (MGP_SPRETEiJ_G0034335) #30	Atp6ap1 (MGP_SPRETEiJ_G0034334) #31	Tafazzin (MGP_SPRETEiJ_G0034333) #32	Dnase1l1 (MGP_SPRETEiJ_G0034332) #33	MGP_SPRETEiJ_G0034331 #34	Emd (MGP_SPRETEiJ_G0034330) #35	Flna (MGP_SPRETEiJ_G0034329) #36	Tktl1 (MGP_SPRETEiJ_G0034328) #37
Ryukyu mouse	MODERN SPECIES	19	Prkx (MGP_CAROLIEiJ_G0033203)	Tbl1x (MGP_CAROLIEiJ_G0033202)	Cldn34d (MGP_CAROLIEiJ_G0033201)	Cldn34b4 (MGP_CAROLIEiJ_G0033200)	Pls3 (MGP_CAROLIEiJ_G0033199)	MGP_CAROLIEiJ_G0033198 ##9	Mtcp1 (MGP_CAROLIEiJ_G0033197) #10	Cmc4 (MGP_CAROLIEiJ_G0033196) #11	Fundc2 (MGP_CAROLIEiJ_G0033195) #12	F8 (MGP_CAROLIEiJ_G0033194) #13	Smim9 (MGP_CAROLIEiJ_G0033193) #14	Mpp1 (MGP_CAROLIEiJ_G0033192) #15	Dkc1 (MGP_CAROLIEiJ_G0033191) #16	Or13ae2 (MGP_CAROLIEiJ_G0033190) #19	Or7r1 (MGP_CAROLIEiJ_G0033189) #20	G6pdx (MGP_CAROLIEiJ_G0033188) #22	Ikbkg (MGP_CAROLIEiJ_G0033187) #23	Fam3a (MGP_CAROLIEiJ_G0033186) #24	Slc10a3 (MGP_CAROLIEiJ_G0033185) #25	Ubl4a (MGP_CAROLIEiJ_G0033184) #26	Lage3 (MGP_CAROLIEiJ_G0033183) #27	Plxna3 (MGP_CAROLIEiJ_G0033182) #28	Fam50a (MGP_CAROLIEiJ_G0033181) #29	Gdi1 (MGP_CAROLIEiJ_G0033180) #30	Atp6ap1 (MGP_CAROLIEiJ_G0033179) #31	Tafazzin (MGP_CAROLIEiJ_G0033178) #32	Dnase1l1 (MGP_CAROLIEiJ_G0033177) #33	MGP_CAROLIEiJ_G0033176 ##34	Emd (MGP_CAROLIEiJ_G0033175) #35	Flna (MGP_CAROLIEiJ_G0033174) #36	Tktl1 (MGP_CAROLIEiJ_G0033173) #37
Shrew mouse	MODERN SPECIES	23	Tbl1x (MGP_PahariEiJ_G0031746)	Cldn34d (MGP_PahariEiJ_G0031745)	Cldn34b4 (MGP_PahariEiJ_G0031744)	Pls3 (MGP_PahariEiJ_G0031743)	Brcc3 (MGP_PahariEiJ_G0031742) #9	Mtcp1 (MGP_PahariEiJ_G0031741) #10	Cmc4 (MGP_PahariEiJ_G0031740) #11	Fundc2 (MGP_PahariEiJ_G0031739) #12	F8 (MGP_PahariEiJ_G0031738) #13	Smim9 (MGP_PahariEiJ_G0031737) #14	Mpp1 (MGP_PahariEiJ_G0031736) #15	Dkc1 (MGP_PahariEiJ_G0031735) #16	Gab3 (MGP_PahariEiJ_G0031734)	Or13ae2 (MGP_PahariEiJ_G0031733) #19	Or7r1 (MGP_PahariEiJ_G0031732) #20	G6pdx (MGP_PahariEiJ_G0031731) #22	Ikbkg (MGP_PahariEiJ_G0031730) #23	Fam3a (MGP_PahariEiJ_G0031729) #24	Slc10a3 (MGP_PahariEiJ_G0031728) #25	Ubl4a (MGP_PahariEiJ_G0031727) #26	Lage3 (MGP_PahariEiJ_G0031726) #27	Plxna3 (MGP_PahariEiJ_G0031725) #28	Fam50a (MGP_PahariEiJ_G0031724) #29	Gdi1 (MGP_PahariEiJ_G0031723) #30	Atp6ap1 (MGP_PahariEiJ_G0031722) #31	Tafazzin (MGP_PahariEiJ_G0031721) #32	Dnase1l1 (MGP_PahariEiJ_G0031720) #33	MGP_PahariEiJ_G0031719 ##34	Emd (MGP_PahariEiJ_G0031718) #35	Flna (MGP_PahariEiJ_G0031717) #36	MGP_PahariEiJ_G0031716 #37
Mus	ANCESTRAL SPECIES	14	ENSGT00940000162224	ENSGT00390000015958	ENSGT00940000157294	ENSGT00390000007332	ENSGT00390000010434.a	ENSGT00390000012556	ENSGT00390000004612	ENSGT00950000183177.a.a.b	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221	ENSGT00530000063435.a.p ##22	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b	ENSGT00390000017929	ENSGT00940000155358	ENSGT00590000083165	ENSGT00730000111066
Mus_A	ANCESTRAL SPECIES	6	ENSGT00940000162224	ENSGT00390000015958	ENSGT00940000157294	ENSGT00390000007332	ENSGT00390000010434.a	ENSGT00390000012556	ENSGT00390000004612	ENSGT00950000183177.a.a.b	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221	ENSGT00530000063435.a.p ##22	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b	ENSGT00390000017929	ENSGT00940000155358	ENSGT00590000083165	ENSGT00730000111066
Mus_B	ANCESTRAL SPECIES	4	ENSGT00940000162224	ENSGT00390000015958	ENSGT00940000157294	ENSGT00390000007332	ENSGT00390000010434.a	ENSGT00390000012556	ENSGT00390000004612	ENSGT00950000183177.a.a.b	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221	ENSGT00530000063435.a.p ##22	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b	ENSGT00390000017929	ENSGT00940000155358	ENSGT00590000083165	ENSGT00730000111066
Mus_C	ANCESTRAL SPECIES	4	ENSGT00940000162224	ENSGT00390000015958	ENSGT00940000157294	ENSGT00390000007332	ENSGT00390000010434.a	ENSGT00390000012556	ENSGT00390000004612	ENSGT00950000183177.a.a.b	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221	ENSGT00530000063435.a.p ##22	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b	ENSGT00390000017929	ENSGT00940000155358	ENSGT00590000083165	ENSGT00730000111066
spretus	MODERN SPECIES	14	Sod3 (MGP_SPRETEiJ_G0028210)	Ccdc149 (MGP_SPRETEiJ_G0028211)	Lgi2 (MGP_SPRETEiJ_G0028212)	Sepsecs (MGP_SPRETEiJ_G0028213)	Pi4k2b (MGP_SPRETEiJ_G0028214)	Zcchc4 (MGP_SPRETEiJ_G0028215)	Anapc4 (MGP_SPRETEiJ_G0028216)	Slc34a2 (MGP_SPRETEiJ_G0028217)	Sel1l3 (MGP_SPRETEiJ_G0028218)	Smim20 (MGP_SPRETEiJ_G0028219)	MGP_SPRETEiJ_G0028220	Cckar (MGP_SPRETEiJ_G0028221)	Tbc1d19 (MGP_SPRETEiJ_G0028222)	Stim2 (MGP_SPRETEiJ_G0028223)	Pcdh7 (MGP_SPRETEiJ_G0028224)	G6pd2 (MGP_SPRETEiJ_G0028225) ##22	Arap2 (MGP_SPRETEiJ_G0028226)	Dthd1 (MGP_SPRETEiJ_G0028227)	Nwd2 (MGP_SPRETEiJ_G0028228)	0610040J01Rik (MGP_SPRETEiJ_G0028229)	Rell1 (MGP_SPRETEiJ_G0028230)	Pgm2 (MGP_SPRETEiJ_G0028231)	Tbc1d1 (MGP_SPRETEiJ_G0028232)	Klf3 (MGP_SPRETEiJ_G0028233)	Tlr6 (MGP_SPRETEiJ_G0028235)	Fam114a1 (MGP_SPRETEiJ_G0028236)	MGP_SPRETEiJ_G0028237	Klhl5 (MGP_SPRETEiJ_G0028238)	Wdr19 (MGP_SPRETEiJ_G0028239)	Rfc1 (MGP_SPRETEiJ_G0028240)	Klb (MGP_SPRETEiJ_G0028241)
Steppe mouse	MODERN SPECIES	2833																G6pd2 (ENSMSIG00000027190) ##22
Mouse	MODERN SPECIES	14	Sod3 (ENSMUSG00000072941)	Ccdc149 (ENSMUSG00000045790)	Lgi2 (ENSMUSG00000039252)	Sepsecs (ENSMUSG00000029173)	Pi4k2b (ENSMUSG00000029186)	Zcchc4 (ENSMUSG00000029179)	Anapc4 (ENSMUSG00000029176)	Slc34a2 (ENSMUSG00000029188)	Sel1l3 (ENSMUSG00000029189)	Smim20 (ENSMUSG00000061461)	Rbpj (ENSMUSG00000039191)	Cckar (ENSMUSG00000029193)	Tbc1d19 (ENSMUSG00000039178)	Stim2 (ENSMUSG00000039156)	Pcdh7 (ENSMUSG00000029108)	G6pd2 (ENSMUSG00000089992) ##22	Arap2 (ENSMUSG00000037999)	Dthd1 (ENSMUSG00000090326)	Nwd2 (ENSMUSG00000090061)	0610040J01Rik (ENSMUSG00000060512)	Rell1 (ENSMUSG00000047881)	Pgm2 (ENSMUSG00000029171)	Tbc1d1 (ENSMUSG00000029174)	Klf3 (ENSMUSG00000029178)	Tlr1 (ENSMUSG00000044827)	Tlr6 (ENSMUSG00000051498)	Fam114a1 (ENSMUSG00000029185)	Tmem156 (ENSMUSG00000037913)	Klhl5 (ENSMUSG00000054920)	Wdr19 (ENSMUSG00000037890)	Rfc1 (ENSMUSG00000029191)
Ryukyu mouse	MODERN SPECIES	14	Sod3 (MGP_CAROLIEiJ_G0027215)	Ccdc149 (MGP_CAROLIEiJ_G0027216)	Lgi2 (MGP_CAROLIEiJ_G0027217)	Sepsecs (MGP_CAROLIEiJ_G0027218)	Pi4k2b (MGP_CAROLIEiJ_G0027219)	Zcchc4 (MGP_CAROLIEiJ_G0027220)	Anapc4 (MGP_CAROLIEiJ_G0027221)	Slc34a2 (MGP_CAROLIEiJ_G0027222)	Sel1l3 (MGP_CAROLIEiJ_G0027223)	Smim20 (MGP_CAROLIEiJ_G0027224)	MGP_CAROLIEiJ_G0027225	Cckar (MGP_CAROLIEiJ_G0027226)	Tbc1d19 (MGP_CAROLIEiJ_G0027227)	Stim2 (MGP_CAROLIEiJ_G0027228)	Pcdh7 (MGP_CAROLIEiJ_G0027229)	G6pd2 (MGP_CAROLIEiJ_G0027230) ##22	Arap2 (MGP_CAROLIEiJ_G0027231)	Dthd1 (MGP_CAROLIEiJ_G0027232)	Nwd2 (MGP_CAROLIEiJ_G0027233)	0610040J01Rik (MGP_CAROLIEiJ_G0027234)	Rell1 (MGP_CAROLIEiJ_G0027235)	Pgm2 (MGP_CAROLIEiJ_G0027236)	MGP_CAROLIEiJ_G0027237	Klf3 (MGP_CAROLIEiJ_G0027238)	Tlr1 (MGP_CAROLIEiJ_G0027239)	Tlr6 (MGP_CAROLIEiJ_G0027240)	Fam114a1 (MGP_CAROLIEiJ_G0027241)	MGP_CAROLIEiJ_G0027242	Klhl5 (MGP_CAROLIEiJ_G0027243)	Wdr19 (MGP_CAROLIEiJ_G0027244)	Rfc1 (MGP_CAROLIEiJ_G0027245)
Shrew mouse	MODERN SPECIES	4	Sod3 (MGP_PahariEiJ_G0016997)	Ccdc149 (MGP_PahariEiJ_G0016998)	Lgi2 (MGP_PahariEiJ_G0016999)	Sepsecs (MGP_PahariEiJ_G0017000)	Pi4k2b (MGP_PahariEiJ_G0017001)	Zcchc4 (MGP_PahariEiJ_G0017002)	Anapc4 (MGP_PahariEiJ_G0017003)	Slc34a2 (MGP_PahariEiJ_G0017004)	Sel1l3 (MGP_PahariEiJ_G0017005)	Smim20 (MGP_PahariEiJ_G0017006)	Rbpj (MGP_PahariEiJ_G0017007)	Cckar (MGP_PahariEiJ_G0017008)	Tbc1d19 (MGP_PahariEiJ_G0017009)	Stim2 (MGP_PahariEiJ_G0017010)	Pcdh7 (MGP_PahariEiJ_G0017011)	G6pd2 (MGP_PahariEiJ_G0017012) ##22	Arap2 (MGP_PahariEiJ_G0017013)	Dthd1 (MGP_PahariEiJ_G0017014)	Nwd2 (MGP_PahariEiJ_G0017015)	0610040J01Rik (MGP_PahariEiJ_G0017016)	Rell1 (MGP_PahariEiJ_G0017017)	Pgm2 (MGP_PahariEiJ_G0017018)	Tbc1d1 (MGP_PahariEiJ_G0017019)	Klf3 (MGP_PahariEiJ_G0017020)	Tlr1 (MGP_PahariEiJ_G0017021)	Tlr6 (MGP_PahariEiJ_G0017022)	Fam114a1 (MGP_PahariEiJ_G0017023)	MGP_PahariEiJ_G0017024	Klhl5 (MGP_PahariEiJ_G0017025)	Wdr19 (MGP_PahariEiJ_G0017026)	Rfc1 (MGP_PahariEiJ_G0017027)
Rat	MODERN SPECIES	46											ENSRNOG00000067246	LOC120099253 (ENSRNOG00000061511) ##17	Or7r1 (ENSRNOG00000058820) #20	LOC690348 (ENSRNOG00000060839) #17	Ikbkg (ENSRNOG00000060936) #23	G6pd (ENSRNOG00000056728) #22	Fam3a (ENSRNOG00000060623) #24	Ubl4a (ENSRNOG00000053061) #26	Slc10a3 (ENSRNOG00000060580) #25	Lage3 (ENSRNOG00000053456)	Plxna3 (ENSRNOG00000060464) #28	Fam50a (ENSRNOG00000058439) #29	Gdi1 (ENSRNOG00000056870) #30	Atp6ap1 (ENSRNOG00000054352) #31	Tafazzin (ENSRNOG00000053023) #32	ENSRNOG00000063225	Dnase1l1 (ENSRNOG00000055641) #33	Rpl10 (ENSRNOG00000056765) #34	Emd (ENSRNOG00000058882) #35	Flna (ENSRNOG00000054890) #36	Tktl1 (ENSRNOG00000055557) #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	660													Or13ae2 (ENSNGAG00000001537) #19	ENSNGAG00000024034 #17	Ikbkg (ENSNGAG00000019535) #23	ENSNGAG00000020668 #22	Fam3a (ENSNGAG00000016683) #24	Slc10a3 (ENSNGAG00000007975) #25	Ubl4a (ENSNGAG00000023782) #26	Lage3 (ENSNGAG00000023293) #27	Plxna3 (ENSNGAG00000022548) #28	ENSNGAG00000012608	Fam50a (ENSNGAG00000021495) #29	Gdi1 (ENSNGAG00000023333) #30	Atp6ap1 (ENSNGAG00000021512) #31	Tafazzin (ENSNGAG00000008680) #32	Dnase1l1 (ENSNGAG00000024155) #33	ENSNGAG00000023746 #34	Emd (ENSNGAG00000018770) #35	Flna (ENSNGAG00000013524) #36	Tex28 (ENSNGAG00000023701)
Lesser Egyptian jerboa	MODERN SPECIES	224															Ikbkg (ENSJJAG00000023964) #23	ENSJJAG00000023806 #22	Fam3a (ENSJJAG00000023156) #24	Slc10a3 (ENSJJAG00000022929) #25	ENSJJAG00000022788 #26	Lage3 (ENSJJAG00000022478) #27	Plxna3 (ENSJJAG00000020257) #28	Fam50a (ENSJJAG00000010389) #29	Gdi1 (ENSJJAG00000008815) #30	ENSJJAG00000019557 #31	Tafazzin (ENSJJAG00000015233) #32	ENSJJAG00000014235 ##34	Emd (ENSJJAG00000019656) #35	Flna (ENSJJAG00000015450) #36	Tktl1 (ENSJJAG00000010328) #37	Tex28 (ENSJJAG00000019769)	Opn1mw (ENSJJAG00000022699)
Kangaroo rat	MODERN SPECIES	526	F8a (ENSDORG00000028723)	Rab39b (ENSDORG00000029496) #7	ENSDORG00000004628 #8	ENSDORG00000013161 #9	ENSDORG00000029487 #11	Mtcp1 (ENSDORG00000013159) #10	Fundc2 (ENSDORG00000013156) #12	ENSDORG00000028874	F8 (ENSDORG00000013155) #13	ENSDORG00000024019	Mpp1 (ENSDORG00000013568) #15	ENSDORG00000013566 #16	Gab3 (ENSDORG00000006809)	ENSDORG00000000625 #17	Ikbkg (ENSDORG00000028140) #23	ENSDORG00000012731 #22	Fam3a (ENSDORG00000025173) #24	Slc10a3 (ENSDORG00000005197) #25	Ubl4a (ENSDORG00000005196) #26	Lage3 (ENSDORG00000029875) #27	Plxna3 (ENSDORG00000000853) #28	Fam50a (ENSDORG00000008851) #29	Gdi1 (ENSDORG00000008848) #30	Atp6ap1 (ENSDORG00000008847) #31	Tafazzin (ENSDORG00000029677) #32	ENSDORG00000004369 #34	Flna (ENSDORG00000004370) #36	Emd (ENSDORG00000004375) #35	Tktl1 (ENSDORG00000013785) #37	Tex28 (ENSDORG00000010136)	Opn1mw (ENSDORG00000026454)
Rodentia_A	ANCESTRAL SPECIES	9	ENSGT00950000183068.a.a	ENSGT00390000000360.r.b #9	ENSGT00390000006885.a #10	ENSGT00390000012647.d #11	ENSGT00940000154783.f #12	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00410000025802.g.b #17	ENSGT01050000244815.B.a.a #20	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Sciuridae	ANCESTRAL SPECIES	27														ENSGT01050000244815.B.a.a #20	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Marmotini	ANCESTRAL SPECIES	83														ENSGT01050000244815.B.a.a #20	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A.e #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843	ENSGT01030000234549.a.a.a.b
Marmotini_b	ANCESTRAL SPECIES	124														ENSGT01050000244815.B.a.a #20	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A.e #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843	ENSGT01030000234549.a.a.a.b
Squirrel	MODERN SPECIES	409															ENSSTOG00000027400 #20	G6PD (ENSSTOG00000021077) #22	IKBKG (ENSSTOG00000011082) #23	FAM3A (ENSSTOG00000022234) #24	SLC10A3 (ENSSTOG00000026515) #25	UBL4A (ENSSTOG00000022150) #26	PLXNA3 (ENSSTOG00000003432) #28	ENSSTOG00000004448 #29	GDI1 (ENSSTOG00000004429) #30	ATP6AP1 (ENSSTOG00000004401) #31	TAFAZZIN (ENSSTOG00000011873) #32	DNASE1L1 (ENSSTOG00000011867) #33	ENSSTOG00000011857 #34	EMD (ENSSTOG00000014689) #35	FLNA (ENSSTOG00000005036) #36	TKTL1 (ENSSTOG00000005014) #37	TEX28 (ENSSTOG00000022078)
Alpin marmot	MODERN SPECIES	136														ENSMMMG00000014778 #20	IKBKG (ENSMMMG00000014671) #23	G6PD (ENSMMMG00000014645) #22	FAM3A (ENSMMMG00000014550) #24	SLC10A3 (ENSMMMG00000014545) #25	UBL4A (ENSMMMG00000014537) #26	PLXNA3 (ENSMMMG00000014513) #28	FAM50A (ENSMMMG00000014490) #29	GDI1 (ENSMMMG00000014475) #30	TAFAZZIN (ENSMMMG00000014302) #32	DNASE1L1 (ENSMMMG00000014299) #33	ENSMMMG00000014279 #34	EMD (ENSMMMG00000014270) #35	FLNA (ENSMMMG00000010080) #36	TKTL1 (ENSMMMG00000010036) #37	TEX28 (ENSMMMG00000010023)	ENSMMMG00000010010	MECP2 (ENSMMMG00000009970)
Eurasian red squirrel	MODERN SPECIES	156	MTCP1 (ENSSVLG00005016077) #10	ENSSVLG00005016124 #12	F8 (ENSSVLG00005016200) #13	ENSSVLG00005016424	ENSSVLG00005016435	SMIM9 (ENSSVLG00005016452) #14	MPP1 (ENSSVLG00005016498) #15	DKC1 (ENSSVLG00005016642) #16	GAB3 (ENSSVLG00005016708)	ENSSVLG00005016985	ENSSVLG00005017050 ##17	ENSSVLG00005017122	ENSSVLG00005017166 #20	ENSSVLG00005017218	IKBKG (ENSSVLG00005017293) #23	G6PD (ENSSVLG00005017520) #22	FAM3A (ENSSVLG00005017584) #24	SLC10A3 (ENSSVLG00005017774) #25	UBL4A (ENSSVLG00005017819) #26	LAGE3 (ENSSVLG00005017858) #27	PLXNA3 (ENSSVLG00005017881) #28	FAM50A (ENSSVLG00005017921) #29	GDI1 (ENSSVLG00005017962) #30	ATP6AP1 (ENSSVLG00005018016) #31	TAFAZZIN (ENSSVLG00005018196) #32	DNASE1L1 (ENSSVLG00005018343) #33	ENSSVLG00005018375 #34	FLNA (ENSSVLG00005018546) #36	EMD (ENSSVLG00005019520) #35	TKTL1 (ENSSVLG00005017318) #37	TEX28 (ENSSVLG00005017596)
Hystricomorpha	ANCESTRAL SPECIES	54	ENSGT00940000161397	ENSGT00940000158132 #7	ENSGT00390000018904 #8	ENSGT00950000183068.a.a	ENSGT00390000000360.r.a.a ##9	ENSGT00390000000360.r.b #9	ENSGT00390000006885.a #10	ENSGT00390000012647.d #11	ENSGT00940000154783.f #12	ENSGT00940000160294 #13	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT01050000244815.B.a.a #20	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.B.a.a ##29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Hystricomorpha_a	ANCESTRAL SPECIES	61	ENSGT00940000161397	ENSGT00940000158132 #7	ENSGT00390000018904 #8	ENSGT00950000183068.a.a	ENSGT00390000000360.r.a.a ##9	ENSGT00390000000360.r.b #9	ENSGT00390000006885.a #10	ENSGT00390000012647.d #11	ENSGT00940000154783.f #12	ENSGT00940000160294 #13	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT01050000244815.B.a.a #20	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.B.a.a ##29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Hystricomorpha_b	ANCESTRAL SPECIES	84															ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.B.a.a ##29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT01030000234549.a.a.a.b
Degu	DUPLICATION
Degu	MODERN SPECIES	259															IKBKG (ENSODEG00000005911) #23	ENSODEG00000006077 #22	FAM3A (ENSODEG00000006189) #24	UBL4A (ENSODEG00000006287) #26	ENSODEG00000006315 #27	PLXNA3 (ENSODEG00000006368) #28	ENSODEG00000006510 ##29	GDI1 (ENSODEG00000006550) #30	ATP6AP1 (ENSODEG00000003643) #31	TAFAZZIN (ENSODEG00000003758) #32	DNASE1L1 (ENSODEG00000003830) #33	ENSODEG00000003868 #34	EMD (ENSODEG00000003890) #35	FLNA (ENSODEG00000004055) #36	TKTL1 (ENSODEG00000004431) #37	ENSODEG00000004454	ENSODEG00000004473
Degu	MODERN SPECIES	226							ENSODEG00000020167	PCDHAC2 (ENSODEG00000012473)	PCDHB1 (ENSODEG00000019919)	PCDHB2 (ENSODEG00000013246)	ENSODEG00000012569	PCDHB4 (ENSODEG00000011616)	ENSODEG00000012750	ENSODEG00000011904	ENSODEG00000011435	ENSODEG00000012347 #22	ENSODEG00000012003	PCDHB6 (ENSODEG00000011685)	ENSODEG00000011819	PCDHB7 (ENSODEG00000014075)	PCDHB13 (ENSODEG00000012740)	ENSODEG00000012330	ENSODEG00000011147	ENSODEG00000011579	ENSODEG00000011345	PCDHB15 (ENSODEG00000013503)	SLC25A2 (ENSODEG00000020131)	ENSODEG00000014858	PCDHGA2 (ENSODEG00000014760)	PCDHGA3 (ENSODEG00000011289)	PCDHGB1 (ENSODEG00000012466)
Long-tailed chinchilla	MODERN SPECIES	287													ENSCLAG00000017603 #20	ENSCLAG00000017457 #19	IKBKG (ENSCLAG00000003721) #23	G6PD (ENSCLAG00000003284) #22	FAM3A (ENSCLAG00000002528) #24	SLC10A3 (ENSCLAG00000002307) #25	UBL4A (ENSCLAG00000002161) #26	LAGE3 (ENSCLAG00000002127) #27	PLXNA3 (ENSCLAG00000001910) #28	ENSCLAG00000002733 ##29	GDI1 (ENSCLAG00000002425) #30	ATP6AP1 (ENSCLAG00000002132) #31	TAFAZZIN (ENSCLAG00000010970) #32	DNASE1L1 (ENSCLAG00000003494) #33	ENSCLAG00000003108 ##34	FLNA (ENSCLAG00000003106) #36	EMD (ENSCLAG00000002874) #35	TKTL1 (ENSCLAG00000001825) #37	ENSCLAG00000001715
Guinea pig	MODERN SPECIES	148	SPRY3 (ENSCPOG00000038854)	TMLHE (ENSCPOG00000005415)	CLIC2 (ENSCPOG00000007641)	RAB39B (ENSCPOG00000039524) #7	VBP1 (ENSCPOG00000013652) #8	ENSCPOG00000001882 ##9	CMC4 (ENSCPOG00000033896) #11	MTCP1 (ENSCPOG00000034922) #10	FUNDC2 (ENSCPOG00000015635) #12	F8 (ENSCPOG00000007773) #13	MPP1 (ENSCPOG00000008826) #15	DKC1 (ENSCPOG00000008825) #16	GAB3 (ENSCPOG00000002987)	ENSCPOG00000026136 #20	IKBKG (ENSCPOG00000021550) #23	G6PD (ENSCPOG00000021395) #22	FAM3A (ENSCPOG00000019367) #24	SLC10A3 (ENSCPOG00000007289) #25	UBL4A (ENSCPOG00000040690) #26	ENSCPOG00000034445 #27	PLXNA3 (ENSCPOG00000011493) #28	ENSCPOG00000005974 ##29	GDI1 (ENSCPOG00000032738) #30	ATP6AP1 (ENSCPOG00000005972) #31	TAFAZZIN (ENSCPOG00000020454) #32	DNASE1L1 (ENSCPOG00000005648) #33	ENSCPOG00000002355 #34	EMD (ENSCPOG00000002642) #35	FLNA (ENSCPOG00000002672) #36	TKTL1 (ENSCPOG00000011767) #37	ENSCPOG00000021789
Naked mole-rat female	MODERN SPECIES	31															ENSHGLG00000032904 #23	G6PD (ENSHGLG00000001124) #22	FAM3A (ENSHGLG00000005912) #24	ENSHGLG00000003702 #26	LAGE3 (ENSHGLG00000039993) #27	PLXNA3 (ENSHGLG00000002186) #28	ENSHGLG00000039319 ##29	GDI1 (ENSHGLG00000003275) #30	ATP6AP1 (ENSHGLG00000002607) #31	ENSHGLG00000009984 #32	DNASE1L1 (ENSHGLG00000013868) #33	RPL10 (ENSHGLG00000002349) ##34	TKTL1 (ENSHGLG00000042978) #37	ENSHGLG00000043472	MECP2 (ENSHGLG00000000899)	IRAK1 (ENSHGLG00000002116)	HCFC1 (ENSHGLG00000001143)
Laurasiatheria	ANCESTRAL SPECIES	26	ENSGT00390000018904 #8	ENSGT00950000183068.a.a	ENSGT00390000000360.r #9	ENSGT00390000006885.a #10	ENSGT00390000012647 #11	ENSGT00940000154783.f #12	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00410000025802.h ##17	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.a.b ##34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Eulipotyphla	ANCESTRAL SPECIES	1991															ENSGT00530000063808.a #23	ENSGT00530000063435.a #22
Hedgehog	MODERN SPECIES	5722																G6PD (ENSEEUG00000004353) #22
Common shrew	MODERN SPECIES	4101															ENSSARG00000000526 #23	G6PD (ENSSARG00000000510) #22
Laurasiatheria_a	ANCESTRAL SPECIES	10	ENSGT00390000018904 #8	ENSGT00950000183068.a.a	ENSGT00390000000360.r.d #9	ENSGT00390000006885.a #10	ENSGT00390000012647 #11	ENSGT00940000154783.f #12	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00410000025802.h ##17	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.a.b ##34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Laurasiatheria_b	ANCESTRAL SPECIES	10	ENSGT00390000000360.r.d #9	ENSGT00390000006885.a #10	ENSGT00390000012647 #11	ENSGT00940000154783.f #12	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00410000025802.g.b #17	ENSGT00410000025802.h ##17	ENSGT01050000244815.B.a.a #20	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Carnivora	ANCESTRAL SPECIES	11	ENSGT00390000000360.r.d #9	ENSGT00390000006885.a #10	ENSGT00390000012647 #11	ENSGT00940000154783.f #12	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT01050000244815.B.a.a #20	ENSGT00410000025802.g.b #17	ENSGT00410000025802.h ##17	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Caniformia	ANCESTRAL SPECIES	22	ENSGT00390000000360.r.d #9	ENSGT00390000006885.a #10	ENSGT00390000012647 #11	ENSGT00940000154783.f #12	ENSGT00940000160294 #13	ENSGT00390000016992	ENSGT00940000163020	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT01050000244815.B.a.a #20	ENSGT00410000025802.g.b #17	ENSGT00410000025802.h ##17	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34	ENSGT00940000153588.b #36	ENSGT00390000002034 #35	ENSGT00940000162426 #37	ENSGT00940000162843
Canidae	ANCESTRAL SPECIES	50	ENSGT00950000183068.a.a	ENSGT00390000000360.r.d #9	ENSGT00390000006885.a #10	ENSGT00390000012647.a #11	ENSGT00940000154783.f #12	ENSGT00940000160294 #13	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000158744 #15	ENSGT00510000047092.a #16	ENSGT00940000159803	ENSGT00410000025802.g.b #17	ENSGT00410000025802.h ##17	ENSGT01050000244815.B.a.a #20	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34	ENSGT00940000153588.b #36	ENSGT00390000002034 #35	ENSGT00940000162426 #37	ENSGT00940000162843
Canis_lupus	ANCESTRAL SPECIES	22	ENSGT00390000018904 #8	ENSGT00390000000360.r.c.a #9	ENSGT00390000012647.a #11	ENSGT00390000006885.a #10	ENSGT00940000154783.f #12	ENSGT00940000160294 #13	ENSGT00390000016992.m	ENSGT00940000163020	ENSGT00940000158744 #15	ENSGT00510000047092.a #16	ENSGT00940000159803	ENSGT00410000025802.g.b.k #17	ENSGT00410000025802.h ##17	ENSGT01050000244815.B.a.a #20	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a.h #27	ENSGT00410000025802.g.a.g #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34	ENSGT00940000153588.b #36	ENSGT00390000002034 #35	ENSGT00940000162426 #37
Dog	MODERN SPECIES	144	VBP1 (ENSCAFG00845017867) #8	MTCP1 (ENSCAFG00845030350) #10	CMC4 (ENSCAFG00845030338) #11	FUNDC2 (ENSCAFG00845030300) #9	ENSCAFG00845030278	ENSCAFG00845030269	F8 (ENSCAFG00845030098) #13	MPP1 (ENSCAFG00845029936) #15	DKC1 (ENSCAFG00845029852) #16	ENSCAFG00845029817 #17	LAGE3 (ENSCAFG00845029708) #27	ENSCAFG00845029697 #17	ENSCAFG00845029686 ##17	cOR7R1 (ENSCAFG00845029673) #20	IKBKG (ENSCAFG00845029634) #23	G6PD (ENSCAFG00845029388) #22	ENSCAFG00845029578 #24	SLC10A3 (ENSCAFG00845029316) #25	UBL4A (ENSCAFG00845029287) #26	ENSCAFG00845029273 #27	PLXNA3 (ENSCAFG00845029121) #28	FAM50A (ENSCAFG00845029041) #29	ATP6AP1 (ENSCAFG00845029004) #31	GDI1 (ENSCAFG00845028921) #30	TAZ (ENSCAFG00845028739) #32	DNASE1L1 (ENSCAFG00845028675) #33	RPL10 (ENSCAFG00845028627) #34	FLNA (ENSCAFG00845027901) #36	EMD (ENSCAFG00845027618) #35	TKTL1 (ENSCAFG00845027442) #37	TEX28 (ENSCAFG00845027400)
Dingo	MODERN SPECIES	383	CMC4 (ENSCAFG00020008696) #11	MTCP1 (ENSCAFG00020008697) #10	FUNDC2 (ENSCAFG00020008699) #12	F8 (ENSCAFG00020008704) #13	ENSCAFG00020008736	ENSCAFG00020008739	MPP1 (ENSCAFG00020008744) #15	ENSCAFG00020008918 #16	ENSCAFG00020008942	ENSCAFG00020008959 #17	ENSCAFG00020008968 #27	ENSCAFG00020008976 ##17	ENSCAFG00020008985	ENSCAFG00020008988	IKBKG (ENSCAFG00020008992) #23	G6PD (ENSCAFG00020008999) #22	FAM3A (ENSCAFG00020009021) #24	SLC10A3 (ENSCAFG00020009027) #25	UBL4A (ENSCAFG00020009032) #26	ENSCAFG00020009037 #27	PLXNA3 (ENSCAFG00020009040) #28	FAM50A (ENSCAFG00020009064) #29	GDI1 (ENSCAFG00020009070) #30	ATP6AP1 (ENSCAFG00020009077) #31	TAFAZZIN (ENSCAFG00020009089) #32	DNASE1L1 (ENSCAFG00020009104) #33	ENSCAFG00020009114 #34	FLNA (ENSCAFG00020009434) #36	EMD (ENSCAFG00020022046) #35	TKTL1 (ENSCAFG00020022053) #37	ENSCAFG00020022055
Red fox	MODERN SPECIES	263															IKBKG (ENSVVUG00000029536) #23	G6PD (ENSVVUG00000029537) #22	FAM3A (ENSVVUG00000029538) #24	SLC10A3 (ENSVVUG00000029540) #25	PLXNA3 (ENSVVUG00000029541) #28	ENSVVUG00000029545 #29	GDI1 (ENSVVUG00000029546) #30	ATP6AP1 (ENSVVUG00000029548) #31	TAZ (ENSVVUG00000029551) #32	DNASE1L1 (ENSVVUG00000029556) #33	RPL10 (ENSVVUG00000029559) #34	FLNA (ENSVVUG00000029569) #36	EMD (ENSVVUG00000029577) #35	TEX28 (ENSVVUG00000029579)	TKTL1 (ENSVVUG00000029580) #37	ENSVVUG00000029585	MECP2 (ENSVVUG00000029591)
Caniformia_b	ANCESTRAL SPECIES	27	ENSGT00390000018904 #8	ENSGT00950000183068.a.a	ENSGT00390000000360.r.d #9	ENSGT00390000012647 #11	ENSGT00390000000360.r.c.b #9	ENSGT00390000006885.a #10	ENSGT00940000154783.f #12	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00410000025802.g.b #17	ENSGT01030000235238.c	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.h ##17	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Ursidae	ANCESTRAL SPECIES	45	ENSGT00910000148519	ENSGT00390000018904 #8	ENSGT00950000183068.a.a	ENSGT00390000000360.r.d #9	ENSGT00390000006885.a #10	ENSGT00390000012647 #11	ENSGT00390000013102.f	ENSGT00940000154783.f #12	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744.p #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00410000025802.g.b #17	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.h ##17	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.a.b ##34	ENSGT00940000153588.b #36	ENSGT00390000002034 #35	ENSGT00940000162426 #37	ENSGT00940000162843
Ursus	ANCESTRAL SPECIES	220														ENSGT00410000025802.h ##17	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.a.b ##34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36
American black bear	MODERN SPECIES	2664														ENSUAMG00000011482 ##17	IKBKG (ENSUAMG00000011490) #23	G6PD (ENSUAMG00000011515) #22	FAM3A (ENSUAMG00000011527) #24	SLC10A3 (ENSUAMG00000011529) #25	UBL4A (ENSUAMG00000011531) #26	PLXNA3 (ENSUAMG00000011554) #28	GDI1 (ENSUAMG00000011657) #30
Polar bear	MODERN SPECIES	330													ENSUMAG00000019262	ENSUMAG00000019269 ##17	IKBKG (ENSUMAG00000019273) #23	G6PD (ENSUMAG00000019300) #22	FAM3A (ENSUMAG00000019452) #24	SLC10A3 (ENSUMAG00000019457) #25	FAM50A (ENSUMAG00000019470) #29	GDI1 (ENSUMAG00000019473) #30	ATP6AP1 (ENSUMAG00000019476) #31	ENSUMAG00000019531 #32	DNASE1L1 (ENSUMAG00000019505) #33	ENSUMAG00000019583 ##34	FLNA (ENSUMAG00000019645) #36	EMD (ENSUMAG00000020684) #35	TKTL1 (ENSUMAG00000020693) #37	TEX28 (ENSUMAG00000020707)	ENSUMAG00000020714	ENSUMAG00000020747	TMEM187 (ENSUMAG00000020759)
Giant Panda	MODERN SPECIES	2288	ENSAMEG00000011976	BRCC3 (ENSAMEG00000011969) #9	MTCP1 (ENSAMEG00000028878) #10	CMC4 (ENSAMEG00000011961) #11	ENSAMEG00000024837	FUNDC2 (ENSAMEG00000011956) #12	ENSAMEG00000028778	F8 (ENSAMEG00000002491) #13	SMIM9 (ENSAMEG00000028154) #14	MPP1 (ENSAMEG00000002802) #15	DKC1 (ENSAMEG00000002776) #16	GAB3 (ENSAMEG00000001366)	ENSAMEG00000019282 #20	ENSAMEG00000019272	IKBKG (ENSAMEG00000000410) #23	G6PD (ENSAMEG00000000366) #22	FAM3A (ENSAMEG00000000362) #24	SLC10A3 (ENSAMEG00000000359) #25	UBL4A (ENSAMEG00000026286) #26	ENSAMEG00000026988 ##17	PLXNA3 (ENSAMEG00000000281) #28	FAM50A (ENSAMEG00000000273) #29	GDI1 (ENSAMEG00000000265) #30	ATP6AP1 (ENSAMEG00000000239) #31	ENSAMEG00000000230 #32	ENSAMEG00000000229 #33	RPL10 (ENSAMEG00000000227) #34	ENSAMEG00000030923	ENSAMEG00000007261 #36	ENSAMEG00000007222 #35	ENSAMEG00000018441 #37
Mustelinae	ANCESTRAL SPECIES	108														ENSGT00410000025802.h ##17	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843	ENSGT01030000234549.a.a.a.b
American mink	MODERN SPECIES	691												ENSNVIG00000014890	ENSNVIG00000014922	ENSNVIG00000014931 ##17	IKBKG (ENSNVIG00000014940) #23	G6PD (ENSNVIG00000015003) #22	FAM3A (ENSNVIG00000015078) #24	UBL4A (ENSNVIG00000015105) #26
Ferret	MODERN SPECIES	531													ENSMPUG00000019515	ENSMPUG00000009840	IKBKG (ENSMPUG00000009835) #23	G6PD (ENSMPUG00000009722) #22	FAM3A (ENSMPUG00000009671) #24	SLC10A3 (ENSMPUG00000019511) #25	UBL4A (ENSMPUG00000009650) #26	PLXNA3 (ENSMPUG00000009629) #28	ENSMPUG00000009476 #29	GDI1 (ENSMPUG00000009461) #30	ATP6AP1 (ENSMPUG00000009450) #31	TAFAZZIN (ENSMPUG00000009363) #32	DNASE1L1 (ENSMPUG00000009354) #33	ENSMPUG00000009320 #34	FLNA (ENSMPUG00000009293) #36	EMD (ENSMPUG00000009232) #35	ENSMPUG00000019510	TKTL1 (ENSMPUG00000009214) #37	TEX28 (ENSMPUG00000009202)
Felidae	ANCESTRAL SPECIES	29	ENSGT00940000158132 #7	ENSGT00390000018904 #8	ENSGT00950000183068.a.a	ENSGT00390000000360.r.d #9	ENSGT00390000006885.a #10	ENSGT00390000012647 #11	ENSGT00940000154783.f #12	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744.m #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Panthera	ANCESTRAL SPECIES	65															ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34
Panthera_a	ANCESTRAL SPECIES	76															ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34
leopard	MODERN SPECIES	303															IKBKG (ENSPPRG00000017843) #23	G6PD (ENSPPRG00000018173) #22	FAM3A (ENSPPRG00000018526) #24	SLC10A3 (ENSPPRG00000018639) #25	ENSPPRG00000019153 #26	FAM50A (ENSPPRG00000020113) #29	GDI1 (ENSPPRG00000020392) #30	ATP6AP1 (ENSPPRG00000020575) #31	TAFAZZIN (ENSPPRG00000020887) #32	DNASE1L1 (ENSPPRG00000021313) #33	ENSPPRG00000021464 ##34
lion	MODERN SPECIES	113															IKBKG (ENSPLOG00000008081) #23	G6PD (ENSPLOG00000008022) #22	FAM3A (ENSPLOG00000007925) #24	SLC10A3 (ENSPLOG00000007885) #25	LAGE3 (ENSPLOG00000007855) #27	PLXNA3 (ENSPLOG00000007506) #28	FAM50A (ENSPLOG00000007410) #29	GDI1 (ENSPLOG00000007386) #30	ATP6AP1 (ENSPLOG00000007351) #31	ENSPLOG00000007302 #32	DNASE1L1 (ENSPLOG00000007262) #33	ENSPLOG00000007204 #34
Cat	MODERN SPECIES	252	RAB39B (ENSFCAG00000038920) #7	VBP1 (ENSFCAG00000022037) #8	ENSFCAG00000027511	BRCC3 (ENSFCAG00000019258) #9	MTCP1 (ENSFCAG00000029629) #10	CMC4 (ENSFCAG00000023645) #11	FUNDC2 (ENSFCAG00000031335) #12	ENSFCAG00000045185	F8 (ENSFCAG00000048336) #13	SMIM9 (ENSFCAG00000040693) #14	MPP1 (ENSFCAG00000006578) #15	DKC1 (ENSFCAG00000006577) #16	GAB3 (ENSFCAG00000006576)	ENSFCAG00000048808	IKBKG (ENSFCAG00000029840) #23	G6PD (ENSFCAG00000043880) #22	FAM3A (ENSFCAG00000035237) #24	SLC10A3 (ENSFCAG00000022989) #25	UBL4A (ENSFCAG00000025607) #26	LAGE3 (ENSFCAG00000038204) #27	PLXNA3 (ENSFCAG00000011400) #28	FAM50A (ENSFCAG00000011399) #29	GDI1 (ENSFCAG00000011398) #30	ATP6AP1 (ENSFCAG00000011397) #31	TAFAZZIN (ENSFCAG00000023652) #32	DNASE1L1 (ENSFCAG00000011396) #33	ENSFCAG00000011395 #34	EMD (ENSFCAG00000011394) #35	FLNA (ENSFCAG00000011393) #36	TKTL1 (ENSFCAG00000011392) #37	TEX28 (ENSFCAG00000044525)
Laurasiatheria_c	ANCESTRAL SPECIES	10	ENSGT00390000018904 #8	ENSGT00950000183068.a.a	ENSGT00390000000360.r.d #9	ENSGT00390000006885.a #10	ENSGT00390000012647 #11	ENSGT00940000154783.f #12	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00410000025802.g.b #17	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.a.b ##34	ENSGT00390000003897.s.b.a.b.b #34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843	ENSGT01030000234549.a.a.a.b
Chiroptera	ANCESTRAL SPECIES	48	ENSGT00390000006885.a #10	ENSGT00390000012647 #11	ENSGT00940000154783.f #12	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00410000025802.h ##17	ENSGT01030000238159	ENSGT01050000244815.B.a.a #20	ENSGT00410000025802.g.b #17	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.a.a ##34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Microchiroptera	ANCESTRAL SPECIES	45	ENSGT00950000183068.a.a	ENSGT00390000000360.r.d #9	ENSGT00390000006885.a #10	ENSGT00390000012647 #11	ENSGT00940000154783.f #12	ENSGT00390000016992	ENSGT00940000160294 #13	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00410000025802.h ##17	ENSGT01030000238159	ENSGT01050000244815.B.a.a #20	ENSGT00410000025802.g.b #17	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.a.a ##34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Greater horseshoe bat	MODERN SPECIES		MTCP1 (ENSRFEG00010000401) #10	FUNDC2 (ENSRFEG00010002186) #12	F8 (ENSRFEG00010002258) #13	ENSRFEG00010002358	ENSRFEG00010002379	SMIM9 (ENSRFEG00010002415) #14	MPP1 (ENSRFEG00010002502) #15	DKC1 (ENSRFEG00010002621) #16	GAB3 (ENSRFEG00010002752)	ENSRFEG00010002860 ##17	ENSRFEG00010002889	ENSRFEG00010002921	ENSRFEG00010002963 #17	ENSRFEG00010002995 #17	IKBKG (ENSRFEG00010003030) #23	G6PD (ENSRFEG00010003111) #22	FAM3A (ENSRFEG00010003196) #24	SLC10A3 (ENSRFEG00010003285) #25	UBL4A (ENSRFEG00010003315) #26	LAGE3 (ENSRFEG00010003340) #27	PLXNA3 (ENSRFEG00010003374) #28	FAM50A (ENSRFEG00010003417) #29	GDI1 (ENSRFEG00010003480) #30	ATP6AP1 (ENSRFEG00010003617) #31	TAZ (ENSRFEG00010003720) #32	BT_m006_jsm59FD5r (ENSRFEG00010003791) #33	RPL10 (ENSRFEG00010003909) ##34	EMD (ENSRFEG00010004008) #35	FLNA (ENSRFEG00010004101) #36	TKTL1 (ENSRFEG00010004159) #37	TEX28 (ENSRFEG00010004212)
Microbat	MODERN SPECIES	977														ENSMLUG00000025335 #20	IKBKG (ENSMLUG00000027075) #23	G6PD (ENSMLUG00000008210) #22	FAM3A (ENSMLUG00000005226) #24	SLC10A3 (ENSMLUG00000008199) #25	UBL4A (ENSMLUG00000027145) #26	ENSMLUG00000030030 #27	PLXNA3 (ENSMLUG00000010006) #28	GDI1 (ENSMLUG00000003501) #30	ENSMLUG00000022234 #29	ATP6AP1 (ENSMLUG00000003493) #31	TAFAZZIN (ENSMLUG00000024037) #32	DNASE1L1 (ENSMLUG00000014342) #33	ENSMLUG00000014337 ##34	FLNA (ENSMLUG00000014316) #36	EMD (ENSMLUG00000005200) #35	TKTL1 (ENSMLUG00000014306) #37	TEX28 (ENSMLUG00000014304)
Megabat	MODERN SPECIES	498															IKBKG (ENSPVAG00000007488) #23	G6PD (ENSPVAG00000007487) #22	FAM3A (ENSPVAG00000007486) #24	ENSPVAG00000007485	LAGE3 (ENSPVAG00000007484) #27	PLXNA3 (ENSPVAG00000007481) #28
Equus	ANCESTRAL SPECIES	52	ENSGT00940000161397	ENSGT00940000158132 #7	ENSGT00390000018904 #8	ENSGT00390000000360.r.d #9	ENSGT00390000006885.a #10	ENSGT00390000012647 #11	ENSGT00940000154783.f #12	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00410000025802.g.b.m #17	ENSGT00410000025802.g.b.n #17	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.b.b #34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Horse	MODERN SPECIES	480	MTCP1 (ENSECAG00000043072) #10	FUNDC2 (ENSECAG00000026822) #12	ENSECAG00000058802	ENSECAG00000029708	ENSECAG00000054244	ENSECAG00000033114	F8 (ENSECAG00000015044) #13	MPP1 (ENSECAG00000009595) #15	DKC1 (ENSECAG00000023524) #16	GAB3 (ENSECAG00000023348)	ENSECAG00000031652 #17	ENSECAG00000056189	ENSECAG00000029643 #17	ENSECAG00000033189	IKBKG (ENSECAG00000020595) #23	G6PD (ENSECAG00000014994) #22	FAM3A (ENSECAG00000013840) #24	SLC10A3 (ENSECAG00000013796) #25	UBL4A (ENSECAG00000013506) #26	LAGE3 (ENSECAG00000038130) #27	PLXNA3 (ENSECAG00000025088) #28	FAM50A (ENSECAG00000023594) #29	GDI1 (ENSECAG00000017687) #30	ATP6AP1 (ENSECAG00000014216) #31	TAFAZZIN (ENSECAG00000010872) #32	DNASE1L1 (ENSECAG00000003758) #33	RPL10 (ENSECAG00000017154) ##34	FLNA (ENSECAG00000009550) #36	EMD (ENSECAG00000013908) #35	TKTL1 (ENSECAG00000021992) #37	TEX28 (ENSECAG00000021904)
Donkey	MODERN SPECIES	36	ENSEASG00005036735 #11	ENSEASG00005034088 #12	ENSEASG00005004499 #13	ENSEASG00005033689 #13	SMIM9 (ENSEASG00005025831) #14	MPP1 (ENSEASG00005007482) #15	ENSEASG00005007484 #16	ENSEASG00005033034	ENSEASG00005032503 #17	ENSEASG00005034297 #17	ENSEASG00005028284	ENSEASG00005031374	ENSEASG00005027434	ENSEASG00005032016 #17	ENSEASG00005032513 #23	G6PD (ENSEASG00005018430) #22	FAM3A (ENSEASG00005018431) #24	SLC10A3 (ENSEASG00005018434) #25	UBL4A (ENSEASG00005018436) #26	PLXNA3 (ENSEASG00005018440) #28	FAM50A (ENSEASG00005018449) #29	GDI1 (ENSEASG00005018454) #30	ATP6AP1 (ENSEASG00005034458) #31	TAFAZZIN (ENSEASG00005025100) #32	DNASE1L1 (ENSEASG00005028299) #33	ENSEASG00005025120 #34	EMD (ENSEASG00005019177) #35	FLNA (ENSEASG00005018577) #36	TKTL1 (ENSEASG00005019179) #37	TEX28 (ENSEASG00005019182)	ENSEASG00005019183
Artiodactyla	ANCESTRAL SPECIES	9	ENSGT00390000006885.a #10	ENSGT00390000012647 #11	ENSGT00940000154783.f #12	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00410000025802.h ##17	ENSGT01030000235238	ENSGT00410000025802.g.b #17	ENSGT01050000244815.B.a.a #20	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.a.b ##34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Suina	ANCESTRAL SPECIES	7	ENSGT00940000163020	ENSGT00390000016992	ENSGT00940000158132 #7	ENSGT00390000018904 #8	ENSGT00950000183068.a.a	ENSGT00390000000360.q.a ##9	ENSGT00390000006885.a #10	ENSGT00390000012647 #11	ENSGT00940000154783.f #12	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00410000025802.g.b #17	ENSGT01050000244815.B.a.a #20	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a.f #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.a.b ##34	ENSGT00940000153588.b #36	ENSGT00390000002034 #35	ENSGT00940000162426 #37	ENSGT00940000162843
Chacoan peccary	MODERN SPECIES	44	BRCC3 (ENSCWAG00000000584) ##9	MTCP1 (ENSCWAG00000000545) #10	CMC4 (ENSCWAG00000000535) #11	FUNDC2 (ENSCWAG00000000516) #12	ENSCWAG00000000499	ENSCWAG00000000488	ENSCWAG00000000473 #13	SMIM9 (ENSCWAG00000000458) #14	MPP1 (ENSCWAG00000000412) #15	DKC1 (ENSCWAG00000000314) #16	GAB3 (ENSCWAG00000000272)	ENSCWAG00000000236 #17	ENSCWAG00000000223	ENSCWAG00000000203	IKBKG (ENSCWAG00000000145) #23	G6PD (ENSCWAG00000000077) #22	FAM3A (ENSCWAG00000000031) #24	SLC10A3 (ENSCWAG00000000012) #25	UBL4A (ENSCWAG00000000008) #26	ENSCWAG00000021354	ENSCWAG00000021347 #27	PLXNA3 (ENSCWAG00000021299) #28	FAM50A (ENSCWAG00000021283) #29	GDI1 (ENSCWAG00000021263) #30	ATP6AP1 (ENSCWAG00000021247) #31	TAFAZZIN (ENSCWAG00000021221) #32	DNASE1L1 (ENSCWAG00000021201) #33	ENSCWAG00000021182 ##34
Pig	MODERN SPECIES	300	VBP1 (ENSSSCG00000012811) #8	ENSSSCG00000012812	BRCC3 (ENSSSCG00000012813) ##9	MTCP1 (ENSSSCG00000012816) #10	CMC4 (ENSSSCG00000062015) #11	FUNDC2 (ENSSSCG00000012817) #12	ENSSSCG00000054901	ENSSSCG00000057758	SMIM9 (ENSSSCG00000055917) #14	F8 (ENSSSCG00000012822) #13	DKC1 (ENSSSCG00000012823) #16	GAB3 (ENSSSCG00000012824)	ENSSSCG00000049540 #17	ENSSSCG00000012827 #20	IKBKG (ENSSSCG00000012825) #23	G6PD (ENSSSCG00000025108) #22	FAM3A (ENSSSCG00000028934) #24	SLC10A3 (ENSSSCG00000025766) #25	ENSSSCG00000057536 #26	ENSSSCG00000032959 #27	PLXNA3 (ENSSSCG00000023483) #28	FAM50A (ENSSSCG00000025303) #29	GDI1 (ENSSSCG00000030421) #30	ATP6AP1 (ENSSSCG00000037310) #31	TAFAZZIN (ENSSSCG00000039655) #32	DNASE1L1 (ENSSSCG00000037032) #33	RPL10 (ENSSSCG00000035997) ##34	FLNA (ENSSSCG00000033299) #36	EMD (ENSSSCG00000037777) #35	TKTL1 (ENSSSCG00000029443) #37	TEX28 (ENSSSCG00000029513)
Artiodactyla_a	ANCESTRAL SPECIES	9	ENSGT00390000006885.a #10	ENSGT00390000012647 #11	ENSGT00940000154783.f #12	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00410000025802.h ##17	ENSGT01030000235238	ENSGT00410000025802.g.b #17	ENSGT00960000186859	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.a.b ##34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Artiodactyla_b	ANCESTRAL SPECIES	19	ENSGT00390000000360.r.d #9	ENSGT00390000006885.a #10	ENSGT00390000012647 #11	ENSGT00940000154783.f #12	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT01030000235238	ENSGT00410000025802.g.b #17	ENSGT00960000186859	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.a.b ##34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Pecora	ANCESTRAL SPECIES	38															ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.a.b.a.a ##34	ENSGT00390000003897.s.b.a.a.b.b ##34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37
Percora_a	ANCESTRAL SPECIES	35															ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.a.b.a.a ##34	ENSGT00390000003897.s.b.a.a.b.b ##34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37
Bovidae	ANCESTRAL SPECIES	33												ENSGT00960000186859	ENSGT00410000025802.g.b #17	ENSGT01030000235238.f	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.a.b.b ##34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Caprinae	ANCESTRAL SPECIES	45															ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.a.b.a.a ##34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Goat	MODERN SPECIES	104														ENSCHIG00000016614 #17	IKBKG (ENSCHIG00000023525) #23	G6PD (ENSCHIG00000015034) #22	FAM3A (ENSCHIG00000011233) #24	UBL4A (ENSCHIG00000023962) #26
Rambouillet Sheep	MODERN SPECIES	205	ENSOARG00020018387	ENSOARG00020018399	ENSOARG00020018429	ENSOARG00020018446	ENSOARG00020018476	ENSOARG00020018489	ENSOARG00020018504	ENSOARG00020018525	ENSOARG00020018581 #17	ENSOARG00020018615	ENSOARG00020018678	ENSOARG00020018703	ENSOARG00020018745 #17	ENSOARG00020018798 #27	IKBKG (ENSOARG00020018901) #23	G6PD (ENSOARG00020019292) #22	SLC10A3 (ENSOARG00020019833) #25	UBL4A (ENSOARG00020019884) #26	PLXNA3 (ENSOARG00020019933) #28	FAM50A (ENSOARG00020020129) #29	GDI1 (ENSOARG00020020178) #30	ATP6AP1 (ENSOARG00020020475) #31	TAFAZZIN (ENSOARG00020020574) #32	DNASE1L1 (ENSOARG00020021378) #33	RPL10 (ENSOARG00020021458) ##34	EMD (ENSOARG00020021549) #35	FLNA (ENSOARG00020021631) #36	TKTL1 (ENSOARG00020021994) #37	OPN1LW (ENSOARG00020022140)	MECP2 (ENSOARG00020022209)	IRAK1 (ENSOARG00020022349)
Bovinae	ANCESTRAL SPECIES	46													ENSGT00960000186859	ENSGT00410000025802.g.b #17	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.a.b.b ##34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Bos	ANCESTRAL SPECIES	36	ENSGT00480000042679.a	ENSGT00940000159162	ENSGT00940000154837.f.b.d.a	ENSGT00940000164266	ENSGT00940000157822	ENSGT00940000154837.f.b.d.b	ENSGT00940000159951.d.b.b.a.c.b	ENSGT00730000111097.e	ENSGT00940000158335	ENSGT00940000163888	ENSGT00940000162668	ENSGT00960000186859	ENSGT00410000025802.g.b #17	ENSGT00530000063808.a #23	ENSGT01100000263481.n.a.b.b.a.a.b.b	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.a.b.b ##34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Bos_a	ANCESTRAL SPECIES	39	ENSGT00940000154837.f.b.d.b	ENSGT00940000159951.d.b.b.a.c.b	ENSGT00730000111097.e	ENSGT00940000158335	ENSGT00940000163888	ENSGT00940000162668	ENSGT00940000161825.v.a.a.a	ENSGT00940000161825.v.a.b	ENSGT00390000001700.a.b.b.a.b #18	ENSGT00910000144363.g.a.a.a.a.a	ENSGT00910000144363.g.a.a.a.a.b	ENSGT00940000154891	ENSGT00410000025802.g.b #17	ENSGT00530000063808.a #23	ENSGT01100000263481.n.a.b.b.a.a.b.b	ENSGT00530000063435.a #22	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.a ##34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843	ENSGT01030000234549.a.a.a.b
Domestic yak	MODERN SPECIES	69	ENSBGRG00000026345	ENSBGRG00000026343	ENSBGRG00000026339	ENSBGRG00000026338	ENSBGRG00000026335	ENSBGRG00000026333	ENSBGRG00000026332	ENSBGRG00000026328 #18	ENSBGRG00000026327	ENSBGRG00000026324	ENSBGRG00000026319	ENSBGRG00000026315	ENSBGRG00000026304 #17	IKBKG (ENSBGRG00000026284) #23	ENSBGRG00000026272	G6PD (ENSBGRG00000026248) #22	SLC10A3 (ENSBGRG00000026237) #25	UBL4A (ENSBGRG00000026234) #26	ENSBGRG00000026228 #27	PLXNA3 (ENSBGRG00000024820) #28	FAM50A (ENSBGRG00000024395) #29	ATP6AP1 (ENSBGRG00000024299) #31	TAFAZZIN (ENSBGRG00000024079) #32	DNASE1L1 (ENSBGRG00000024010) #33	ENSBGRG00000023896 ##34	EMD (ENSBGRG00000023778) #35	GDI1 (ENSBGRG00000023696) #30	FLNA (ENSBGRG00000023487) #36	TKTL1 (ENSBGRG00000023403) #37	ENSBGRG00000023305	MECP2 (ENSBGRG00000023220)
Wild yak	MODERN SPECIES	2585															IKBKG (ENSBMUG00000026904) #23	G6PD (ENSBMUG00000026905) #22	SLC10A3 (ENSBMUG00000026906) #25	UBL4A (ENSBMUG00000026907) #26	LAGE3 (ENSBMUG00000026908) #27	PLXNA3 (ENSBMUG00000026909) #28	FAM50A (ENSBMUG00000026910) #29	GDI1 (ENSBMUG00000026911) #30	ATP6AP1 (ENSBMUG00000026912) #31	TAFAZZIN (ENSBMUG00000026914) #32	DNASE1L1 (ENSBMUG00000026915) #33	ENSBMUG00000026916 ##34
Bos_b	ANCESTRAL SPECIES	31	ENSGT00940000158335	ENSGT00940000163888	ENSGT00940000162668	ENSGT00960000192909	ENSGT00940000161825.v.a.a.a	ENSGT00390000012182.i.a.b	ENSGT00390000012182.i.a.a.b	ENSGT00940000161825.v.a.b	ENSGT00910000144363.g.a.a.a.a.a.a.a	ENSGT00910000144363.g.a.a.a.a.b	ENSGT00960000186859	ENSGT00410000025802.g.b #17	ENSGT00940000160561.d.b	ENSGT00530000063808.a #23	ENSGT01100000263481.n.a.b.b.a.a.b.b	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.a.b.b ##34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Hybrid Bos Indicus	MODERN SPECIES	315	FAM133A (ENSBIXG00005014766)	ENSBIXG00005005495	ENSBIXG00005014508	ENSBIXG00005014480	PABPC5 (ENSBIXG00005006433)	ENSBIXG00005014439	ENSBIXG00005014423	ENSBIXG00005014407	ENSBIXG00005005973	ENSBIXG00005006735	ENSBIXG00005014316	ENSBIXG00005001881 #17	ENSBIXG00005014255	ENSBIXG00005000250	IKBKG (ENSBIXG00005014233) #23	G6PD (ENSBIXG00005014158) #22	ENSBIXG00005014028	SLC10A3 (ENSBIXG00005013999) #25	ENSBIXG00005013979 #26	LAGE3 (ENSBIXG00005006122) #27	PLXNA3 (ENSBIXG00005013935) #28	FAM50A (ENSBIXG00005013872) #29	GDI1 (ENSBIXG00005001727) #30	ATP6AP1 (ENSBIXG00005001714) #31	ENSBIXG00005013746 #32	DNASE1L1 (ENSBIXG00005005490) #33	ENSBIXG00005001627 ##34	EMD (ENSBIXG00005013423) #35	FLNA (ENSBIXG00005013367) #36	TKTL1 (ENSBIXG00005013244) #37	TEX28 (ENSBIXG00005013213)
Cow	MODERN SPECIES	177	ENSBTAG00000049694	ENSBTAG00000033445	ENSBTAG00000049844	ENSBTAG00000036343	ENSBTAG00000049678	ENSBTAG00000048281	ENSBTAG00000054052	ENSBTAG00000049584	ENSBTAG00000052652	ENSBTAG00000053848 #17	ENSBTAG00000055292	ENSBTAG00000048914 #17	ENSBTAG00000001900	IKBKG (ENSBTAG00000006268) #23	ENSBTAG00000053534	G6PD (ENSBTAG00000019512) #22	FAM3A (ENSBTAG00000012747) #24	SLC10A3 (ENSBTAG00000014333) #25	UBL4A (ENSBTAG00000014331) #26	LAGE3 (ENSBTAG00000054868) #27	PLXNA3 (ENSBTAG00000008552) #28	FAM50A (ENSBTAG00000033032) #29	GDI1 (ENSBTAG00000012125) #30	ATP6AP1 (ENSBTAG00000012117) #31	TAFAZZIN (ENSBTAG00000007456) #32	DNASE1L1 (ENSBTAG00000007455) #33	RPL10 (ENSBTAG00000007454) ##34	EMD (ENSBTAG00000022314) #35	FLNA (ENSBTAG00000011190) #36	TKTL1 (ENSBTAG00000020127) #37	TEX28 (ENSBTAG00000020300)
Siberian musk deer	MODERN SPECIES	14														ENSMMSG00000013493 #17	IKBKG (ENSMMSG00000013522) #23	G6PD (ENSMMSG00000013593) #22	ENSMMSG00000013656 #24	SLC10A3 (ENSMMSG00000013825) #25	UBL4A (ENSMMSG00000013839) #26	LAGE3 (ENSMMSG00000013858) #27	PLXNA3 (ENSMMSG00000013876) #28	ENSMMSG00000013933 #29	GDI1 (ENSMMSG00000013993) #30	ATP6AP1 (ENSMMSG00000014033) #31	TAFAZZIN (ENSMMSG00000014064) #32	ENSMMSG00000014152 #33	ENSMMSG00000014213 ##34	EMD (ENSMMSG00000014247) #35	FLNA (ENSMMSG00000014357) #36	TKTL1 (ENSMMSG00000015211) #37	TEX28 (ENSMMSG00000015249)
Yarkand deer	MODERN SPECIES	1323	ENSCHYG00000026124	PDZD4 (ENSCHYG00000026107)	L1CAM (ENSCHYG00000025877)	AVPR2 (ENSCHYG00000025838)	ARHGAP4 (ENSCHYG00000025566)	ENSCHYG00000025281	RENBP (ENSCHYG00000025248)	HCFC1 (ENSCHYG00000025112)	IRAK1 (ENSCHYG00000024907)	MECP2 (ENSCHYG00000024843)	ENSCHYG00000024807	TEX28 (ENSCHYG00000024783)	TKTL1 (ENSCHYG00000024748) #37	EMD (ENSCHYG00000024666) #35	IKBKG (ENSCHYG00000024518) #23	G6PD (ENSCHYG00000024413) #22	ENSCHYG00000024202 #24	LAGE3 (ENSCHYG00000024139) #27	PLXNA3 (ENSCHYG00000023890) #28	GDI1 (ENSCHYG00000023645) #30	ATP6AP1 (ENSCHYG00000023535) #31	TAFAZZIN (ENSCHYG00000022770) #32	DNASE1L1 (ENSCHYG00000022608) #33	ENSCHYG00000022474 ##34	FLNA (ENSCHYG00000021422) #36	ENSCHYG00000021292 #20	ENSCHYG00000021269	ENSCHYG00000021240 #17	ENSCHYG00000021194	ENSCHYG00000021132 #17	GAB3 (ENSCHYG00000020865)
Cetacea	ANCESTRAL SPECIES	19	ENSGT00950000183068.a.a	ENSGT00390000000360.r.d #9	ENSGT00390000000360.q.a ##9	ENSGT00390000006885.a #10	ENSGT00390000012647 #11	ENSGT00940000154783.f.d.a #12	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00410000025802.g.b #17	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A.n #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.a.b ##34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Blue whale	MODERN SPECIES	40	ENSBMSG00010021641	BRCC3 (ENSBMSG00010021621) #9	MTCP1 (ENSBMSG00010021613) #10	CMC4 (ENSBMSG00010021610) #11	ENSBMSG00010021604 #12	ENSBMSG00010021592	ENSBMSG00010021588	F8 (ENSBMSG00010021526) #13	SMIM9 (ENSBMSG00010021513) #14	MPP1 (ENSBMSG00010021484) #15	DKC1 (ENSBMSG00010021430) #16	ENSBMSG00010021407	ENSBMSG00010021382	ENSBMSG00010021370	IKBKG (ENSBMSG00010021344) #23	G6PD (ENSBMSG00010021326) #22	FAM3A (ENSBMSG00010021308) #24	SLC10A3 (ENSBMSG00010021301) #25	UBL4A (ENSBMSG00010021291) #26	LAGE3 (ENSBMSG00010021278) #27	PLXNA3 (ENSBMSG00010021267) #28	ENSBMSG00010021250 #29	GDI1 (ENSBMSG00010021239) #30	ATP6AP1 (ENSBMSG00010021220) #31	TAFAZZIN (ENSBMSG00010021182) #32	DNASE1L1 (ENSBMSG00010021173) #33	ENSBMSG00010021148 ##34	ENSBMSG00010021119 #37	ENSBMSG00010021096 #37	EMD (ENSBMSG00010021072) #35	FLNA (ENSBMSG00010020850) #36
Odontoceti	ANCESTRAL SPECIES	19	ENSGT00950000183068.a.a	ENSGT00390000000360.r.d #9	ENSGT00390000000360.q.a ##9	ENSGT00390000006885.a #10	ENSGT00390000012647 #11	ENSGT00940000154783.f.d.a #12	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00410000025802.g.b #17	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A.m #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.a.b ##34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Odontoceti_a	ANCESTRAL SPECIES	21	ENSGT00950000183068.a.a	ENSGT00390000000360.r.d #9	ENSGT00390000000360.q.a ##9	ENSGT00390000006885.a #10	ENSGT00390000012647 #11	ENSGT00940000154783.f.d.a #12	ENSGT00390000016992	ENSGT00940000163020	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00960000186859	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A.m #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.a.b ##34	ENSGT00390000002034.i #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Odontoceti_b	ANCESTRAL SPECIES	17	ENSGT00950000183068.a.a	ENSGT00390000000360.r.d #9	ENSGT00390000000360.q.a ##9	ENSGT00390000006885.a #10	ENSGT00390000012647 #11	ENSGT00940000154783.f.d.a #12	ENSGT00390000016992.x	ENSGT00940000163020.y	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00960000186859	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A.m #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.a.b ##34	ENSGT00390000002034.i #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843
Monodontidae	ANCESTRAL SPECIES	19	ENSGT00390000018904 #8	ENSGT00950000183068.a.a	ENSGT00390000000360.q.a ##9	ENSGT00390000006885.a #10	ENSGT00390000012647 #11	ENSGT00940000154783.f.d.a #12	ENSGT00390000016992.w	ENSGT00940000163020.z	ENSGT00940000160294 #13	ENSGT00390000005685 #14	ENSGT00940000158744 #15	ENSGT00510000047092 #16	ENSGT00940000159803	ENSGT00960000186859	ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00730000111022 #26	ENSGT00410000025802.g.a #27	ENSGT01050000244850.A.a #28	ENSGT00390000004735.A.m #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.a.b ##34	ENSGT00390000002034.i #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT01030000234549.a.a.a.b
Beluga whale	MODERN SPECIES	139	VBP1 (ENSDLEG00000012075) #8	ENSDLEG00000012046	BRCC3 (ENSDLEG00000012025) ##9	MTCP1 (ENSDLEG00000012008) #10	CMC4 (ENSDLEG00000011999) #11	FUNDC2 (ENSDLEG00000011985) #12	ENSDLEG00000011977	ENSDLEG00000011965	F8 (ENSDLEG00000011690) #13	MPP1 (ENSDLEG00000011647) #15	DKC1 (ENSDLEG00000011603) #16	GAB3 (ENSDLEG00000011559)	ENSDLEG00000011545	ENSDLEG00000011523	IKBKG (ENSDLEG00000011500) #23	G6PD (ENSDLEG00000011468) #22	FAM3A (ENSDLEG00000011447) #24	UBL4A (ENSDLEG00000011413) #25	LAGE3 (ENSDLEG00000011398) #27	PLXNA3 (ENSDLEG00000011331) #28	FAM50A (ENSDLEG00000011270) #29	GDI1 (ENSDLEG00000011245) #30	ATP6AP1 (ENSDLEG00000011212) #31	TAZ (ENSDLEG00000011183) #32	DNASE1L1 (ENSDLEG00000011154) #33	ENSDLEG00000011125 ##34	EMD (ENSDLEG00000011102) #35	FLNA (ENSDLEG00000010999) #36	TKTL1 (ENSDLEG00000010974) #37	ENSDLEG00000010916	MECP2 (ENSDLEG00000010908)
Narwhal	MODERN SPECIES	309															IKBKG (ENSMMNG00015013582) #23	G6PD (ENSMMNG00015013556) #22	FAM3A (ENSMMNG00015013509) #24	SLC10A3 (ENSMMNG00015013481) #25	UBL4A (ENSMMNG00015013467) #26	LAGE3 (ENSMMNG00015013456) #27	PLXNA3 (ENSMMNG00015013425) #28	ENSMMNG00015013390 #29	GDI1 (ENSMMNG00015013359) #30	ATP6AP1 (ENSMMNG00015013337) #31	ENSMMNG00015013329	ENSMMNG00015013313 #32	DNASE1L1 (ENSMMNG00015013295) #33	ENSMMNG00015013277 ##34	ENSMMNG00015013213 #35	FLNA (ENSMMNG00015013139) #36	TKTL1 (ENSMMNG00015013076) #37
Vaquita	MODERN SPECIES	34	BRCC3 (ENSPSNG00000013597) #9	CMC4 (ENSPSNG00000013473) #11	MTCP1 (ENSPSNG00000022484) #10	ENSPSNG00000022480 #12	ENSPSNG00000022476	ENSPSNG00000022473	F8 (ENSPSNG00000022465) #13	SMIM9 (ENSPSNG00000022452) #14	MPP1 (ENSPSNG00000022439) #15	DKC1 (ENSPSNG00000022426) #16	GAB3 (ENSPSNG00000022421)	ENSPSNG00000022416 #27	ENSPSNG00000022414	ENSPSNG00000022407	IKBKG (ENSPSNG00000022395) #23	G6PD (ENSPSNG00000022382) #22	FAM3A (ENSPSNG00000022374) #24	SLC10A3 (ENSPSNG00000022364) #25	ENSPSNG00000022354 #27	PLXNA3 (ENSPSNG00000022341) #28	ENSPSNG00000022331 #29	GDI1 (ENSPSNG00000022323) #30	ATP6AP1 (ENSPSNG00000022314) #31	TAFAZZIN (ENSPSNG00000022306) #32	DNASE1L1 (ENSPSNG00000022297) #33	ENSPSNG00000022280 ##34	ENSPSNG00000022266 #35	FLNA (ENSPSNG00000022089) #36	TKTL1 (ENSPSNG00000021994) #37	ENSPSNG00000021965	ENSPSNG00000021951
Dolphin	MODERN SPECIES	3745														ENSTTRG00000007029	IKBKG (ENSTTRG00000007028) #23	G6PD (ENSTTRG00000007027) #22
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES	645																ENSPCTG00005018700 #22
Sperm whale	MODERN SPECIES	13	AVPR2 (ENSPCTG00005021602)	ARHGAP4 (ENSPCTG00005021658)	NAA10 (ENSPCTG00005021859)	RENBP (ENSPCTG00005021884)	HCFC1 (ENSPCTG00005021915)	ENSPCTG00005022009	MECP2 (ENSPCTG00005022045)	ENSPCTG00005022067	TEX28 (ENSPCTG00005022073)	ENSPCTG00005022081	TKTL1 (ENSPCTG00005012476) #37	FLNA (ENSPCTG00005012993) #36	EMD (ENSPCTG00005013517) #35	RPL10 (ENSPCTG00005013674) ##34	DNASE1L1 (ENSPCTG00005013759) #33	FAM3A (ENSPCTG00005013803) #22	SLC10A3 (ENSPCTG00005014048) #25	UBL4A (ENSPCTG00005014090) #26	ENSPCTG00005014136 #27	PLXNA3 (ENSPCTG00005014209) #28	FAM50A (ENSPCTG00005014324) #29	GDI1 (ENSPCTG00005014385) #30	IKBKG (ENSPCTG00005014430) #23	ENSPCTG00005014674 #17	GAB3 (ENSPCTG00005014727)	DKC1 (ENSPCTG00005014862) #16	MPP1 (ENSPCTG00005014958) #15	SMIM9 (ENSPCTG00005015221) #14	F8 (ENSPCTG00005015296) #13	ENSPCTG00005015667	F8A1 (ENSPCTG00005015687)
Camelidae	ANCESTRAL SPECIES	80															ENSGT00530000063808.a #23	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #24	ENSGT00950000182808.b.b #25	ENSGT00390000004735.A #29	ENSGT00950000182994.B.a.a.a #30	ENSGT00940000156650 #31	ENSGT00390000018621 #32	ENSGT00950000182846.a.a.a.a.a #33	ENSGT00390000003897.s.b.a.a.b ##34	ENSGT00390000002034 #35	ENSGT00940000153588.b #36	ENSGT00940000162426 #37	ENSGT00940000162843	ENSGT01030000234549.a.a.a.b	ENSGT00530000063687.b.b.b	ENSGT00910000146917
Arabian camel	MODERN SPECIES	204	BRCC3 (ENSCDRG00005017635) #9	MTCP1 (ENSCDRG00005017604) #10	CMC4 (ENSCDRG00005017574) #11	ENSCDRG00005017538 #12	F8 (ENSCDRG00005017422) #13	SMIM9 (ENSCDRG00005017392) #14	MPP1 (ENSCDRG00005017184) #15	DKC1 (ENSCDRG00005017117) #16	ENSCDRG00005017097 ##17	GAB3 (ENSCDRG00005016636)	ENSCDRG00005016586 #17	ENSCDRG00005016563 ##17	ENSCDRG00005016521 #17	ENSCDRG00005016489	IKBKG (ENSCDRG00005016363) #23	G6PD (ENSCDRG00005016281) #22	FAM3A (ENSCDRG00005016065) #24	SLC10A3 (ENSCDRG00005016014) #25	LAGE3 (ENSCDRG00005015984) #27	FAM50A (ENSCDRG00005012822) #29	GDI1 (ENSCDRG00005012702) #30	ATP6AP1 (ENSCDRG00005012618) #31	TAZ (ENSCDRG00005012375) #32	DNASE1L1 (ENSCDRG00005012179) #33	ENSCDRG00005012077 ##34	ENSCDRG00005011914 #35	FLNA (ENSCDRG00005011684) #36	TKTL1 (ENSCDRG00005011584) #37	TEX28 (ENSCDRG00005011542)	ENSCDRG00005011483	MECP2 (ENSCDRG00005011374)
Alpaca	MODERN SPECIES	1392																G6PD (ENSVPAG00000007713) #22