Murinae	ANCESTRAL SPECIES	9	ENSGT00940000161229 #7	ENSGT00940000156186 #8	ENSGT00940000159229 #9	ENSGT00510000048601.b #10	ENSGT00510000048601.a #11	ENSGT00940000158318 #12	ENSGT00940000162655 #13	ENSGT00940000163791 #14	ENSGT00940000156596 #15	ENSGT00390000014623 #16	ENSGT00940000157868 #17	ENSGT00390000000145 #18	ENSGT00940000157728.b #19	ENSGT00950000183028.a.a.a #20	ENSGT00390000007488 #21	ENSGT00530000063596.A #22	ENSGT00950000183001.a.b.b #23	ENSGT00390000011204 #24	ENSGT00940000163665 #25	ENSGT00390000017581.b #26	ENSGT00940000159390 #27	ENSGT00940000156807 #28	ENSGT00940000160774 #29	ENSGT01090000259985.b.b.a.b #30	ENSGT01090000259985.b.b.a.a #31	ENSGT01090000259985.b.a.a.a #32	ENSGT00960000191981	ENSGT01090000259985.b.a.b.a.a #33	ENSGT01090000259985.b.a.b.a.b #34	ENSGT01090000259985.b.b.b.a.a.b #35	ENSGT00940000155063 #36
Mus	ANCESTRAL SPECIES	5	ENSGT00940000161229 #7	ENSGT00940000156186 #8	ENSGT00940000159229 #9	ENSGT00510000048601.b #10	ENSGT00510000048601.a #11	ENSGT00940000158318 #12	ENSGT00940000162655 #13	ENSGT00940000163791 #14	ENSGT00940000156596 #15	ENSGT00390000014623 #16	ENSGT00940000157868 #17	ENSGT00390000000145 #18	ENSGT00940000157728.b #19	ENSGT00950000183028.a.a.a #20	ENSGT00390000007488 #21	ENSGT00530000063596.A #22	ENSGT00950000183001.a.b.b #23	ENSGT00390000011204 #24	ENSGT00940000163665 #25	ENSGT00390000017581.b #26	ENSGT00940000159390 #27	ENSGT00940000156807 #28	ENSGT00940000160774 #29	ENSGT01090000259985.b.b.a.b #30	ENSGT01090000259985.b.b.a.a #31	ENSGT01090000259985.b.a.a.a #32	ENSGT00960000191981	ENSGT01090000259985.b.a.b.a.a #33	ENSGT01090000259985.b.a.b.a.b #34	ENSGT01090000259985.b.b.b.a.a.b #35	ENSGT00940000155063 #36
Mus_A	ANCESTRAL SPECIES	5	ENSGT00940000161229 #7	ENSGT00940000156186 #8	ENSGT00940000159229 #9	ENSGT00510000048601.b #10	ENSGT00510000048601.a #11	ENSGT00940000158318 #12	ENSGT00940000162655 #13	ENSGT00940000163791 #14	ENSGT00940000156596 #15	ENSGT00390000014623 #16	ENSGT00940000157868 #17	ENSGT00390000000145 #18	ENSGT00940000157728.b #19	ENSGT00950000183028.a.a.a #20	ENSGT00390000007488 #21	ENSGT00530000063596.A #22	ENSGT00950000183001.a.b.b #23	ENSGT00390000011204 #24	ENSGT00940000163665 #25	ENSGT00390000017581.b #26	ENSGT00940000159390 #27	ENSGT00940000156807 #28	ENSGT00940000160774 #29	ENSGT01090000259985.b.b.a.b #30	ENSGT01090000259985.b.b.a.a #31	ENSGT01090000259985.b.a.a.a #32	ENSGT00960000191981	ENSGT01090000259985.b.a.b.a.a #33	ENSGT01090000259985.b.a.b.a.b #34	ENSGT01090000259985.b.b.b.a.a.b #35	ENSGT00940000155063 #36
Mus_B	ANCESTRAL SPECIES	21	ENSGT00940000161229 #7	ENSGT00940000156186 #8	ENSGT00940000159229 #9	ENSGT00510000048601.b #10	ENSGT00510000048601.a #11	ENSGT00940000158318 #12	ENSGT00940000162655 #13	ENSGT00940000163791 #14	ENSGT00940000156596 #15	ENSGT00390000014623 #16	ENSGT00940000157868 #17	ENSGT00390000000145 #18	ENSGT00940000157728.b #19	ENSGT00950000183028.a.a.a #20	ENSGT00390000007488 #21	ENSGT00530000063596.A #22	ENSGT00950000183001.a.b.b #23	ENSGT00390000011204 #24	ENSGT00940000163665 #25	ENSGT00390000017581.b #26	ENSGT00940000159390 #27	ENSGT00940000156807 #28	ENSGT00940000160774 #29	ENSGT01090000259985.b.b.a.b #30	ENSGT01090000259985.b.b.a.a #31	ENSGT01090000259985.b.a.a.a #32	ENSGT00960000191981	ENSGT01090000259985.b.a.b.a.a #33	ENSGT01090000259985.b.a.b.a.b #34	ENSGT01090000259985.b.b.b.a.a.b #35	ENSGT00940000155063 #36
Mouse	MODERN SPECIES		Col3a1 (ENSMUSG00000026043) #7	Gulp1 (ENSMUSG00000056870) #8	Mettl21e (ENSMUSG00000046828) #9	Ercc5 (ENSMUSG00000026048) #10	Bivm (ENSMUSG00000041684) #11	Poglut2 (ENSMUSG00000026047) #12	Tex30 (ENSMUSG00000026049) #13	Gm8251 (ENSMUSG00000091844) #14	Mettl21c (ENSMUSG00000047343) #15	Tpp2 (ENSMUSG00000041763) #16	Uxs1 (ENSMUSG00000057363) #17	Ecrg4 (ENSMUSG00000026051) #18	Nck2 (ENSMUSG00000066877) #19	Fhl2 (ENSMUSG00000008136) #20	AI597479 (ENSMUSG00000010290) #21	Tgfbrap1 (ENSMUSG00000070939) #22	Gpr45 (ENSMUSG00000041907) #23	Mrps9 (ENSMUSG00000060679) #24	Pou3f3 (ENSMUSG00000045515) #25	Tmem182 (ENSMUSG00000079588) #26	Mfsd9 (ENSMUSG00000041945) #27	Slc9a2 (ENSMUSG00000026062) #28	Slc9a4 (ENSMUSG00000026065) #29	Il18rap (ENSMUSG00000026068) #30	Il18r1 (ENSMUSG00000026070) #31	Il1rl1 (ENSMUSG00000026069) #32	Il1rl2 (ENSMUSG00000070942) #33	Il1r1 (ENSMUSG00000026072) #34	Il1r2 (ENSMUSG00000026073) #35	Map4k4 (ENSMUSG00000026074) #36	Rfx8 (ENSMUSG00000057173) #37
Mus_C	ANCESTRAL SPECIES	1	ENSGT00940000161229 #7	ENSGT00940000156186 #8	ENSGT00940000159229 #9	ENSGT00510000048601.b #10	ENSGT00510000048601.a #11	ENSGT00940000158318 #12	ENSGT00940000162655 #13	ENSGT00940000163791 #14	ENSGT00940000156596 #15	ENSGT00390000014623 #16	ENSGT00940000157868 #17	ENSGT00390000000145 #18	ENSGT00940000157728.b #19	ENSGT00950000183028.a.a.a #20	ENSGT00390000007488 #21	ENSGT00530000063596.A #22	ENSGT00950000183001.a.b.b #23	ENSGT00390000011204 #24	ENSGT00940000163665 #25	ENSGT00390000017581.b #26	ENSGT00940000159390 #27	ENSGT00940000156807 #28	ENSGT00940000160774 #29	ENSGT01090000259985.b.b.a.b #30	ENSGT01090000259985.b.b.a.a #31	ENSGT01090000259985.b.a.a.a #32	ENSGT00960000191981	ENSGT01090000259985.b.a.b.a.a #33	ENSGT01090000259985.b.a.b.a.b #34	ENSGT01090000259985.b.b.b.a.a.b #35	ENSGT00940000155063 #36
spretus	MODERN SPECIES		Col3a1 (MGP_SPRETEiJ_G0014909) #7	Gulp1 (MGP_SPRETEiJ_G0014908) #8	Mettl21e (MGP_SPRETEiJ_G0014907) #9	Ercc5 (MGP_SPRETEiJ_G0014906) #10	MGP_SPRETEiJ_G0014905	Poglut2 (MGP_SPRETEiJ_G0014904) #12	Tex30 (MGP_SPRETEiJ_G0014903) #13	MGP_SPRETEiJ_G0014902 #14	Mettl21c (MGP_SPRETEiJ_G0014901) #15	Tpp2 (MGP_SPRETEiJ_G0014900) #16	Uxs1 (MGP_SPRETEiJ_G0014899) #17	Ecrg4 (MGP_SPRETEiJ_G0014898) #18	MGP_SPRETEiJ_G0014897 #19	Fhl2 (MGP_SPRETEiJ_G0014896) #20	AI597479 (MGP_SPRETEiJ_G0014895) #21	Tgfbrap1 (MGP_SPRETEiJ_G0014894) #22	Gpr45 (MGP_SPRETEiJ_G0014893) #23	Mrps9 (MGP_SPRETEiJ_G0014892) #24	Pou3f3 (MGP_SPRETEiJ_G0014891) #25	Tmem182 (MGP_SPRETEiJ_G0014890) #26	Mfsd9 (MGP_SPRETEiJ_G0014889) #27	Slc9a2 (MGP_SPRETEiJ_G0014888) #28	Slc9a4 (MGP_SPRETEiJ_G0014887) #29	Il18rap (MGP_SPRETEiJ_G0014886) #30	Il18r1 (MGP_SPRETEiJ_G0014885) #31	Il1rl1 (MGP_SPRETEiJ_G0014884) #32	Il1rl2 (MGP_SPRETEiJ_G0014883) #33	Il1r1 (MGP_SPRETEiJ_G0014882) #34	MGP_SPRETEiJ_G0014881 #35	Map4k4 (MGP_SPRETEiJ_G0014880) #36	MGP_SPRETEiJ_G0014879
Steppe mouse	MODERN SPECIES	3348														Fhl2 (ENSMSIG00000025611) #20	ENSMSIG00000025607 #21	Tgfbrap1 (ENSMSIG00000025547) #22	Gpr45 (ENSMSIG00000025534) #23	Mrps9 (ENSMSIG00000025504) #24	ENSMSIG00000025480	ENSMSIG00000025470	Tmem182 (ENSMSIG00000025450) #26	Mfsd9 (ENSMSIG00000025439) #27	Slc9a2 (ENSMSIG00000025415) #28	Slc9a4 (ENSMSIG00000025357) #29	Il18rap (ENSMSIG00000025343) #30	Il18r1 (ENSMSIG00000025150) #31	Il1rl1 (ENSMSIG00000025096) #32	ENSMSIG00000025093	Il1rl2 (ENSMSIG00000025067) #33	Il1r1 (ENSMSIG00000025043) #34	Il1r2 (ENSMSIG00000025031) #35
Ryukyu mouse	MODERN SPECIES		Col3a1 (MGP_CAROLIEiJ_G0014105) #7	Gulp1 (MGP_CAROLIEiJ_G0014104) #8	Mettl21e (MGP_CAROLIEiJ_G0014103) #9	Ercc5 (MGP_CAROLIEiJ_G0014102) #10	Bivm (MGP_CAROLIEiJ_G0014101) #11	Poglut2 (MGP_CAROLIEiJ_G0014100) #12	Tex30 (MGP_CAROLIEiJ_G0014099) #13	MGP_CAROLIEiJ_G0014098 #14	Mettl21c (MGP_CAROLIEiJ_G0014097) #15	Tpp2 (MGP_CAROLIEiJ_G0014096) #16	Uxs1 (MGP_CAROLIEiJ_G0014095) #17	Ecrg4 (MGP_CAROLIEiJ_G0014094) #18	Nck2 (MGP_CAROLIEiJ_G0014093) #19	Fhl2 (MGP_CAROLIEiJ_G0014092) #20	AI597479 (MGP_CAROLIEiJ_G0014091) #21	Tgfbrap1 (MGP_CAROLIEiJ_G0014090) #22	Gpr45 (MGP_CAROLIEiJ_G0014089) #23	Mrps9 (MGP_CAROLIEiJ_G0014088) #24	Pou3f3 (MGP_CAROLIEiJ_G0014087) #25	Tmem182 (MGP_CAROLIEiJ_G0014086) #26	Mfsd9 (MGP_CAROLIEiJ_G0014085) #27	Slc9a2 (MGP_CAROLIEiJ_G0014084) #28	Slc9a4 (MGP_CAROLIEiJ_G0014083) #29	Il18rap (MGP_CAROLIEiJ_G0014082) #30	Il18r1 (MGP_CAROLIEiJ_G0014081) #31	Il1rl1 (MGP_CAROLIEiJ_G0014080) #32	Il1rl2 (MGP_CAROLIEiJ_G0014079) #33	Il1r1 (MGP_CAROLIEiJ_G0014078) #34	Il1r2 (MGP_CAROLIEiJ_G0014077) #35	Map4k4 (MGP_CAROLIEiJ_G0014076) #36	MGP_CAROLIEiJ_G0014075
Shrew mouse	MODERN SPECIES	18	Wdr75 (MGP_PahariEiJ_G0027351)	MGP_PahariEiJ_G0027350	Col5a2 (MGP_PahariEiJ_G0027349)	Col3a1 (MGP_PahariEiJ_G0027348) #7	Gulp1 (MGP_PahariEiJ_G0027347) #8	Mettl21e (MGP_PahariEiJ_G0027346) #9	Ercc5 (MGP_PahariEiJ_G0027345) #10	Bivm (MGP_PahariEiJ_G0027344) #11	Poglut2 (MGP_PahariEiJ_G0027343) #12	Tpp2 (MGP_PahariEiJ_G0027341) #16	Uxs1 (MGP_PahariEiJ_G0027340) #17	Ecrg4 (MGP_PahariEiJ_G0027339) #18	Nck2 (MGP_PahariEiJ_G0027338) #19	Fhl2 (MGP_PahariEiJ_G0027337) #20	AI597479 (MGP_PahariEiJ_G0027336) #21	Tgfbrap1 (MGP_PahariEiJ_G0027335) #22	Gpr45 (MGP_PahariEiJ_G0027334) #23	Mrps9 (MGP_PahariEiJ_G0027333) #24	Pou3f3 (MGP_PahariEiJ_G0027332) #25	Tmem182 (MGP_PahariEiJ_G0027331) #26	Mfsd9 (MGP_PahariEiJ_G0027330) #27	Slc9a2 (MGP_PahariEiJ_G0027329) #28	Slc9a4 (MGP_PahariEiJ_G0027328) #29	Il18rap (MGP_PahariEiJ_G0027327) #30	Il18r1 (MGP_PahariEiJ_G0027326) #31	Il1rl1 (MGP_PahariEiJ_G0027325) #32	MGP_PahariEiJ_G0027324 ##30	Il1r1 (MGP_PahariEiJ_G0027323) #34	Il1r2 (MGP_PahariEiJ_G0027322) #35	Map4k4 (MGP_PahariEiJ_G0027321) #36	MGP_PahariEiJ_G0027320
Rat	MODERN SPECIES	19	Col3a1 (ENSRNOG00000003357) #7	Gulp1 (ENSRNOG00000003242) #8	Mettl21cl1 (ENSRNOG00000022762) #9	Ercc5 (ENSRNOG00000022812) #10	Bivm (ENSRNOG00000022894) #11	Poglut2 (ENSRNOG00000011740) #12	Tex30 (ENSRNOG00000011658) #13	Ccdc168 (ENSRNOG00000063478) #14	Mettl21c (ENSRNOG00000011591) #15	Tpp2 (ENSRNOG00000011194) #16	Ecrg4 (ENSRNOG00000023576) #18	Nck2 (ENSRNOG00000017155) #19	Hsp90ab1-ps13 (ENSRNOG00000067665)	Fhl2 (ENSRNOG00000016866) #20	RGD1310553 (ENSRNOG00000016447) #21	Tgfbrap1 (ENSRNOG00000024562) #22	Gpr45 (ENSRNOG00000016446) #23	Arpc5l-ps1 (ENSRNOG00000067388)	Mrps9 (ENSRNOG00000016201) #24	Pou3f3 (ENSRNOG00000038909) #25	Tmem182 (ENSRNOG00000028945) #26	Mfsd9 (ENSRNOG00000023129) #27	Slc9a2 (ENSRNOG00000015567) #28	Slc9a4 (ENSRNOG00000015306) #29	Il18rap (ENSRNOG00000054218) #30	Il18r1 (ENSRNOG00000015027) #31	Il1rl1 (ENSRNOG00000014835) #32	AABR07067459.1 (ENSRNOG00000061227)	Il1rl2 (ENSRNOG00000014683) #33	Il1r1 (ENSRNOG00000014504) #34	RGD1564447 (ENSRNOG00000032108)