Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000154709.a.a #22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00940000154709.a.a #22
Sarcopterygii	ANCESTRAL SPECIES																	ENSGT00940000154709.a.a #22
Tetrapoda	ANCESTRAL SPECIES																	ENSGT00940000154709.a.a #22
Amniota	ANCESTRAL SPECIES	26	ENSGT00940000158955 #8	ENSGT01100000263518.B.b.a #7	ENSGT00940000159657.d	ENSGT00940000160979	ENSGT00940000164079	ENSGT00940000159939	ENSGT00940000157365	ENSGT00940000157067	ENSGT00940000166065	ENSGT00940000157586	ENSGT00940000156637 #15	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00390000011228.a	ENSGT00940000162196	ENSGT01030000234625.A	ENSGT00940000156861	ENSGT00940000153792.B	ENSGT00940000157493	ENSGT00990000206767
Mammalia	ANCESTRAL SPECIES	41							ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT01030000234625.A	ENSGT00940000156861	ENSGT00940000153792.B	ENSGT00940000157493	ENSGT00940000154189.A	ENSGT01030000234563.a.a.c.b
Theria	ANCESTRAL SPECIES	12	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Eutheria	ANCESTRAL SPECIES		ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00490000044158 #16	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Euarchontoglires	ANCESTRAL SPECIES		ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00910000147141	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00490000044158 #16	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Primates	ANCESTRAL SPECIES	7	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00910000147141	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00490000044158 #16	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Haplorrhini	ANCESTRAL SPECIES	7	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00910000147141	ENSGT00940000156637 #15	ENSGT00490000044158 #16	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Simiiformes	ANCESTRAL SPECIES	8	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00910000147141	ENSGT00940000156637 #15	ENSGT00910000146850 #14	ENSGT00490000044158 #16	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT00910000146522 #19	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Catarrhini	ANCESTRAL SPECIES	10	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00910000147141	ENSGT00940000156637 #15	ENSGT00910000146850 #14	ENSGT00490000044158 #16	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT00910000146522 #19	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000155445.f #35	ENSGT00940000153391.c.b.b #36
Hominoidea	ANCESTRAL SPECIES	7	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00910000147141	ENSGT00940000156637 #15	ENSGT00910000146850 #14	ENSGT00490000044158 #16	ENSGT00440000034918.q.a.a.b.b.a	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT00910000146522 #19	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00910000146886 #27	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000155445.f #35	ENSGT00940000153391.c.b.b #36
Hominidae	ANCESTRAL SPECIES	6	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00910000146850 #14	ENSGT00490000044158 #16	ENSGT00440000034918.q.a.a.b.b.a	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT00910000146522 #19	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00910000146886 #27	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00910000147495 #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	6	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00910000146850 #14	ENSGT00490000044158 #16	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT00910000146522 #19	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00910000146886 #27	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00910000147495 #37
Gorilla	MODERN SPECIES		GPR37L1 (ENSGGOG00000003800) #7	ELF3 (ENSGGOG00000014183) #8	RNPEP (ENSGGOG00000014172) #9	TIMM17A (ENSGGOG00000008415) #10	LMOD1 (ENSGGOG00000028449) #11	SHISA4 (ENSGGOG00000006801) #12	IPO9 (ENSGGOG00000006787) #13	ENSGGOG00000042885 #14	NAV1 (ENSGGOG00000006773) #15	ENSGGOG00000022738 #16	CSRP1 (ENSGGOG00000004840) #17	PHLDA3 (ENSGGOG00000037874) #18	ENSGGOG00000004839 #19	TNNI1 (ENSGGOG00000012698) #20	LAD1 (ENSGGOG00000012687) #21	TNNT2 (ENSGGOG00000012669) #22	PKP1 (ENSGGOG00000012651) #23	ENSGGOG00000028604 #24	TMEM9 (ENSGGOG00000005804) #25	CACNA1S (ENSGGOG00000001201) #26	ENSGGOG00000042186 #27	KIF21B (ENSGGOG00000001197) #28	INAVA (ENSGGOG00000027521) #29	ENSGGOG00000036548 #30	ENSGGOG00000038804 #31	CAMSAP2 (ENSGGOG00000010861) #32	DDX59 (ENSGGOG00000014615) #33	KIF14 (ENSGGOG00000013809) #34	ENSGGOG00000038922 #35	NR5A2 (ENSGGOG00000010226) #36	ENSGGOG00000043998 #37
Homo/Pan group	ANCESTRAL SPECIES	7	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00910000146850 #14	ENSGT00490000044158 #16	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT00910000146522 #19	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00910000146886 #27	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00910000147495 #37
Human	MODERN SPECIES		LGR6 (ENSG00000133067)	PTPN7 (ENSG00000143851)	ARL8A (ENSG00000143862)	GPR37L1 (ENSG00000170075) #7	ELF3 (ENSG00000163435) #8	RNPEP (ENSG00000176393) #9	TIMM17A (ENSG00000134375) #10	LMOD1 (ENSG00000163431) #11	SHISA4 (ENSG00000198892) #12	IPO9 (ENSG00000198700) #13	NAV1 (ENSG00000134369) #15	CSRP1 (ENSG00000159176) #17	PHLDA3 (ENSG00000174307) #18	TNNI1 (ENSG00000159173) #20	LAD1 (ENSG00000159166) #21	TNNT2 (ENSG00000118194) #22	PKP1 (ENSG00000081277) #23	IGFN1 (ENSG00000163395) #24	TMEM9 (ENSG00000116857) #25	ASCL5 (ENSG00000232237)	CACNA1S (ENSG00000081248) #26	KIF21B (ENSG00000116852) #28	INAVA (ENSG00000163362) #29	GPR25 (ENSG00000170128) #30	CAMSAP2 (ENSG00000118200) #32	DDX59 (ENSG00000118197) #33	KIF14 (ENSG00000118193) #34	ZNF281 (ENSG00000162702)	NR5A2 (ENSG00000116833) #36	PTPRC (ENSG00000081237)	ATP6V1G3 (ENSG00000151418)
Pan	ANCESTRAL SPECIES		ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00910000146850 #14	ENSGT00490000044158 #16	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT00910000146522 #19	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00910000146886 #27	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000155445.f #35	ENSGT00940000153391.c.b.b #36	ENSGT00910000147495 #37
Chimpanzee	MODERN SPECIES		ARL8A (ENSPTRG00000001846)	GPR37L1 (ENSPTRG00000001845) #7	ELF3 (ENSPTRG00000001844) #8	RNPEP (ENSPTRG00000001843) #9	TIMM17A (ENSPTRG00000001842) #10	LMOD1 (ENSPTRG00000001841) #11	SHISA4 (ENSPTRG00000001839) #12	IPO9 (ENSPTRG00000023652) #13	NAV1 (ENSPTRG00000001837) #15	ENSPTRG00000048301 #16	CSRP1 (ENSPTRG00000001836) #17	PHLDA3 (ENSPTRG00000047455) #18	ENSPTRG00000001835 #19	TNNI1 (ENSPTRG00000001834) #20	LAD1 (ENSPTRG00000001833) #21	TNNT2 (ENSPTRG00000001832) #22	PKP1 (ENSPTRG00000001831) #23	IGFN1 (ENSPTRG00000049308) #24	TMEM9 (ENSPTRG00000001829) #25	ASCL5 (ENSPTRG00000051709)	CACNA1S (ENSPTRG00000001827) #26	KIF21B (ENSPTRG00000001825) #28	INAVA (ENSPTRG00000001824) #29	GPR25 (ENSPTRG00000001823) #30	CAMSAP2 (ENSPTRG00000001822) #32	DDX59 (ENSPTRG00000001821) #33	KIF14 (ENSPTRG00000001820) #34	NR5A2 (ENSPTRG00000001818) #36	ENSPTRG00000044327 #37	ENSPTRG00000050013	PTPRC (ENSPTRG00000001817)
Bonobo	MODERN SPECIES		GPR37L1 (ENSPPAG00000037162) #7	ELF3 (ENSPPAG00000035813) #8	RNPEP (ENSPPAG00000038397) #9	TIMM17A (ENSPPAG00000027429) #10	LMOD1 (ENSPPAG00000035452) #11	SHISA4 (ENSPPAG00000041154) #12	IPO9 (ENSPPAG00000037356) #13	ENSPPAG00000033726 #14	NAV1 (ENSPPAG00000032938) #15	ENSPPAG00000006393 #16	CSRP1 (ENSPPAG00000008502) #17	PHLDA3 (ENSPPAG00000018747) #18	ENSPPAG00000012629 #19	TNNI1 (ENSPPAG00000022888) #20	LAD1 (ENSPPAG00000029203) #21	ENSPPAG00000031050 #22	PKP1 (ENSPPAG00000013857) #23	ENSPPAG00000019723 #24	TMEM9 (ENSPPAG00000038561) #25	CACNA1S (ENSPPAG00000040299) #26	ENSPPAG00000035321 #27	KIF21B (ENSPPAG00000040735) #28	INAVA (ENSPPAG00000029036) #29	GPR25 (ENSPPAG00000012221) #30	CAMSAP2 (ENSPPAG00000027662) #32	DDX59 (ENSPPAG00000031649) #33	KIF14 (ENSPPAG00000000158) #34	ENSPPAG00000032515 #35	NR5A2 (ENSPPAG00000038856) #36	ENSPPAG00000034716	ENSPPAG00000032350 #37
Orangutan	MODERN SPECIES		GPR37L1 (ENSPPYG00000000353) #7	ELF3 (ENSPPYG00000000354) #8	RNPEP (ENSPPYG00000000355) #9	TIMM17A (ENSPPYG00000000356) #10	LMOD1 (ENSPPYG00000000357) #11	SHISA4 (ENSPPYG00000000358) #12	ENSPPYG00000035318	IPO9 (ENSPPYG00000029377) #13	NAV1 (ENSPPYG00000000359) #15	ENSPPYG00000040915 #16	ENSPPYG00000034597	CSRP1 (ENSPPYG00000000361) #17	PHLDA3 (ENSPPYG00000000362) #18	TNNI1 (ENSPPYG00000010640) #20	LAD1 (ENSPPYG00000000363) #21	ENSPPYG00000000364 #22	PKP1 (ENSPPYG00000000365) #23	ENSPPYG00000000366 #24	TMEM9 (ENSPPYG00000000367) #25	ASCL5 (ENSPPYG00000040755)	CACNA1S (ENSPPYG00000000369) #26	KIF21B (ENSPPYG00000000371) #28	INAVA (ENSPPYG00000000372) #29	GPR25 (ENSPPYG00000000373) #30	CAMSAP2 (ENSPPYG00000000374) #32	DDX59 (ENSPPYG00000025828) #33	KIF14 (ENSPPYG00000000376) #34	ZNF281 (ENSPPYG00000030430)	NR5A2 (ENSPPYG00000000379) #36	PTPRC (ENSPPYG00000000380)	ATP6V1G3 (ENSPPYG00000000382)
Gibbon	MODERN SPECIES	24	ELF3 (ENSNLEG00000032926) #8	RNPEP (ENSNLEG00000018090) #9	TIMM17A (ENSNLEG00000029135) #10	LMOD1 (ENSNLEG00000018088) #11	SHISA4 (ENSNLEG00000018087) #12	IPO9 (ENSNLEG00000018086) #13	ENSNLEG00000034945	NAV1 (ENSNLEG00000018085) #15	ENSNLEG00000034335 #14	ENSNLEG00000028192 #16	ENSNLEG00000030945	CSRP1 (ENSNLEG00000018083) #17	PHLDA3 (ENSNLEG00000035700) #18	TNNI1 (ENSNLEG00000033080) #20	LAD1 (ENSNLEG00000018080) #21	ENSNLEG00000018079 #22	PKP1 (ENSNLEG00000018078) #23	ENSNLEG00000018077 #24	TMEM9 (ENSNLEG00000018076) #25	CACNA1S (ENSNLEG00000018075) #26	KIF21B (ENSNLEG00000018074) #28	ENSNLEG00000018073 #27	INAVA (ENSNLEG00000018072) #29	CAMSAP2 (ENSNLEG00000018070) #32	DDX59 (ENSNLEG00000018069) #33	KIF14 (ENSNLEG00000018068) #34	ZNF281 (ENSNLEG00000018067)	ENSNLEG00000030544 #35	NR5A2 (ENSNLEG00000018066) #36	PTPRC (ENSNLEG00000018065)	ATP6V1G3 (ENSNLEG00000018064)
Cercopithecidae	ANCESTRAL SPECIES	20	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00910000147141	ENSGT00940000156637 #15	ENSGT00910000146850 #14	ENSGT00490000044158 #16	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000155445.f #35	ENSGT00940000153391.c.b.b #36
Rhinopithecus	ANCESTRAL SPECIES	85	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00910000147141	ENSGT00940000156637 #15	ENSGT00910000146850 #14	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00910000146886 #27	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00390000003897.s.b.a.a.b.f	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000155445.f #35
Black snub-nosed monkey	MODERN SPECIES	1292	PTPN7 (ENSRBIG00000006954)	ARL8A (ENSRBIG00000044455)	GPR37L1 (ENSRBIG00000031674) #7	ELF3 (ENSRBIG00000040131) #8	RNPEP (ENSRBIG00000040090) #9	TIMM17A (ENSRBIG00000041192) #10	LMOD1 (ENSRBIG00000012326) #11	SHISA4 (ENSRBIG00000038365) #12	IPO9 (ENSRBIG00000038277) #13	ENSRBIG00000040606 #14	NAV1 (ENSRBIG00000040225) #15	CSRP1 (ENSRBIG00000031901) #17	PHLDA3 (ENSRBIG00000024496) #18	TNNI1 (ENSRBIG00000028608) #20	LAD1 (ENSRBIG00000040690) #21	TNNT2 (ENSRBIG00000035257) #22	PKP1 (ENSRBIG00000032956) #23	IGFN1 (ENSRBIG00000008024) #24	TMEM9 (ENSRBIG00000008529) #25	ASCL5 (ENSRBIG00000016841)	CACNA1S (ENSRBIG00000026701) #26	ENSRBIG00000023840 #27	KIF21B (ENSRBIG00000011702) #28	INAVA (ENSRBIG00000041196) #29	GPR25 (ENSRBIG00000014302) #30	ENSRBIG00000013689	CAMSAP2 (ENSRBIG00000035391) #32	DDX59 (ENSRBIG00000043232) #33	ENSRBIG00000027672	KIF14 (ENSRBIG00000035385) #34	ZNF281 (ENSRBIG00000033514)
Golden snub-nosed monkey	MODERN SPECIES	1033																TNNT2 (ENSRROG00000008727) #22	PKP1 (ENSRROG00000030958) #23	IGFN1 (ENSRROG00000045247) #24	TMEM9 (ENSRROG00000037404) #25	ASCL5 (ENSRROG00000023978)	CACNA1S (ENSRROG00000036248) #26	ENSRROG00000039751 #27	KIF21B (ENSRROG00000035471) #28	INAVA (ENSRROG00000035907) #29	GPR25 (ENSRROG00000012284) #30	ENSRROG00000014110	CAMSAP2 (ENSRROG00000035363) #32	DDX59 (ENSRROG00000042119) #33	ENSRROG00000018645	KIF14 (ENSRROG00000040036) #34	ENSRROG00000037002 #35
Cercopithecinae	ANCESTRAL SPECIES	18	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00910000147141	ENSGT00940000156637 #15	ENSGT00910000146850 #14	ENSGT00490000044158 #16	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000155445.f #35	ENSGT00940000153391.c.b.b #36
Vervet Monkey	MODERN SPECIES	17	LGR6 (ENSCSAG00000014130)	PTPN7 (ENSCSAG00000014118)	ARL8A (ENSCSAG00000014093)	GPR37L1 (ENSCSAG00000014085) #7	ELF3 (ENSCSAG00000014076) #8	RNPEP (ENSCSAG00000014067) #9	LMOD1 (ENSCSAG00000014056) #11	SHISA4 (ENSCSAG00000014044) #12	IPO9 (ENSCSAG00000014031) #13	NAV1 (ENSCSAG00000014015) #15	ENSCSAG00000000254 #16	CSRP1 (ENSCSAG00000014006) #17	PHLDA3 (ENSCSAG00000000253) #18	TNNI1 (ENSCSAG00000013998) #20	LAD1 (ENSCSAG00000013986) #21	TNNT2 (ENSCSAG00000013948) #22	PKP1 (ENSCSAG00000013888) #23	TMEM9 (ENSCSAG00000013860) #25	ASCL5 (ENSCSAG00000000252)	CACNA1S (ENSCSAG00000013846) #26	KIF21B (ENSCSAG00000013828) #28	INAVA (ENSCSAG00000013813) #29	GPR25 (ENSCSAG00000000251) #30	CAMSAP2 (ENSCSAG00000013807) #32	DDX59 (ENSCSAG00000013799) #33	KIF14 (ENSCSAG00000013776) #34	ZNF281 (ENSCSAG00000000250)	NR5A2 (ENSCSAG00000013702) #36	ENSCSAG00000000249	PTPRC (ENSCSAG00000013674)	ENSCSAG00000013661
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00910000147141	ENSGT00940000156637 #15	ENSGT00910000146850 #14	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000155445.f #35	ENSGT00940000153391.c.b.b #36
Cercopithecinae_b	ANCESTRAL SPECIES	3	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00910000147141	ENSGT00940000156637 #15	ENSGT00910000146850 #14	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00910000146886 #27	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000155445.f #35
Olive baboon	MODERN SPECIES		PTPN7 (ENSPANG00000015835)	ARL8A (ENSPANG00000006549)	GPR37L1 (ENSPANG00000017272) #7	ENSPANG00000037181	ELF3 (ENSPANG00000009054) #8	RNPEP (ENSPANG00000013414) #9	TIMM17A (ENSPANG00000021348) #10	LMOD1 (ENSPANG00000011450) #11	SHISA4 (ENSPANG00000009053) #12	IPO9 (ENSPANG00000026214) #13	NAV1 (ENSPANG00000005199) #15	CSRP1 (ENSPANG00000024051) #17	PHLDA3 (ENSPANG00000015274) #18	TNNI1 (ENSPANG00000020398) #20	LAD1 (ENSPANG00000013150) #21	TNNT2 (ENSPANG00000014888) #22	PKP1 (ENSPANG00000018373) #23	ENSPANG00000009052 #24	TMEM9 (ENSPANG00000046712) #25	ASCL5 (ENSPANG00000016203)	CACNA1S (ENSPANG00000017271) #26	KIF21B (ENSPANG00000018968) #28	ENSPANG00000050807	ENSPANG00000045170	INAVA (ENSPANG00000016202) #29	GPR25 (ENSPANG00000007959) #30	CAMSAP2 (ENSPANG00000001373) #32	DDX59 (ENSPANG00000017384) #33	KIF14 (ENSPANG00000017385) #34	ENSPANG00000045182	ZNF281 (ENSPANG00000017386)
Cercopithecinae_d	ANCESTRAL SPECIES	46	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00910000147141	ENSGT00940000156637 #15	ENSGT00910000146850 #14	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00910000146886 #27	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000155445.f #35	ENSGT00940000153391.c.b.b #36
Sooty mangabey	MODERN SPECIES	106	PTPN7 (ENSCATG00000042478)	ARL8A (ENSCATG00000041869)	GPR37L1 (ENSCATG00000036656) #7	ELF3 (ENSCATG00000035893) #8	RNPEP (ENSCATG00000028344) #9	TIMM17A (ENSCATG00000013023) #10	LMOD1 (ENSCATG00000039243) #11	SHISA4 (ENSCATG00000038919) #12	IPO9 (ENSCATG00000045312) #13	ENSCATG00000037262 #14	NAV1 (ENSCATG00000019102) #15	CSRP1 (ENSCATG00000035500) #17	PHLDA3 (ENSCATG00000014459) #18	TNNI1 (ENSCATG00000018765) #20	LAD1 (ENSCATG00000008418) #21	TNNT2 (ENSCATG00000031720) #22	PKP1 (ENSCATG00000035705) #23	IGFN1 (ENSCATG00000031019) #24	TMEM9 (ENSCATG00000039769) #25	ASCL5 (ENSCATG00000015434)	CACNA1S (ENSCATG00000042068) #26	ENSCATG00000036317 #27	KIF21B (ENSCATG00000029377) #28	INAVA (ENSCATG00000045224) #29	GPR25 (ENSCATG00000015537) #30	CAMSAP2 (ENSCATG00000044456) #32	DDX59 (ENSCATG00000039084) #33	KIF14 (ENSCATG00000041751) #34	NR5A2 (ENSCATG00000045134) #36	ENSCATG00000043649 #37	PTPRC (ENSCATG00000024826)
Drill	MODERN SPECIES	1046	ELF3 (ENSMLEG00000011371) #8	RNPEP (ENSMLEG00000037728) #9	TIMM17A (ENSMLEG00000029422) #10	LMOD1 (ENSMLEG00000043462) #11	SHISA4 (ENSMLEG00000034649) #12	IPO9 (ENSMLEG00000030171) #13	ENSMLEG00000019453	NAV1 (ENSMLEG00000034018) #15	ENSMLEG00000039774 #14	ENSMLEG00000034367	CSRP1 (ENSMLEG00000029334) #17	PHLDA3 (ENSMLEG00000023965) #18	ENSMLEG00000030504	TNNI1 (ENSMLEG00000029665) #20	LAD1 (ENSMLEG00000042833) #21	TNNT2 (ENSMLEG00000042858) #22	PKP1 (ENSMLEG00000038912) #23	ENSMLEG00000036496 #24	ENSMLEG00000036164	ASCL5 (ENSMLEG00000015159)	CACNA1S (ENSMLEG00000041379) #26	KIF21B (ENSMLEG00000039847) #28	ENSMLEG00000042363 #27	INAVA (ENSMLEG00000012836) #29	GPR25 (ENSMLEG00000001037) #30	CAMSAP2 (ENSMLEG00000043071) #32	DDX59 (ENSMLEG00000042339) #33	KIF14 (ENSMLEG00000022344) #34	ZNF281 (ENSMLEG00000043050)	ENSMLEG00000040121 #35	NR5A2 (ENSMLEG00000043238) #36
Macaca	ANCESTRAL SPECIES		ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00910000147141	ENSGT00940000156637 #15	ENSGT00910000146850 #14	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000155445.f #35	ENSGT00940000153391.c.b.b #36
Pig-tailed macaque	MODERN SPECIES	113	ARL8A (ENSMNEG00000039827)	GPR37L1 (ENSMNEG00000028842) #7	ELF3 (ENSMNEG00000044616) #8	RNPEP (ENSMNEG00000034207) #9	TIMM17A (ENSMNEG00000038000) #10	LMOD1 (ENSMNEG00000039137) #11	SHISA4 (ENSMNEG00000041267) #12	IPO9 (ENSMNEG00000043396) #13	ENSMNEG00000024467	ENSMNEG00000034937 #14	NAV1 (ENSMNEG00000040347) #15	CSRP1 (ENSMNEG00000037309) #17	PHLDA3 (ENSMNEG00000003230) #18	TNNI1 (ENSMNEG00000041578) #20	LAD1 (ENSMNEG00000044700) #21	TNNT2 (ENSMNEG00000041011) #22	PKP1 (ENSMNEG00000037688) #23	IGFN1 (ENSMNEG00000045262) #24	TMEM9 (ENSMNEG00000042765) #25	ASCL5 (ENSMNEG00000028774)	CACNA1S (ENSMNEG00000024910) #26	KIF21B (ENSMNEG00000030089) #28	INAVA (ENSMNEG00000033445) #29	GPR25 (ENSMNEG00000007644) #30	CAMSAP2 (ENSMNEG00000043467) #32	DDX59 (ENSMNEG00000040640) #33	KIF14 (ENSMNEG00000035969) #34	ZNF281 (ENSMNEG00000042566)	ENSMNEG00000044738 #35	NR5A2 (ENSMNEG00000035152) #36	ENSMNEG00000041439 #37
Macaca_a	ANCESTRAL SPECIES		ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00940000156777 #17	ENSGT00910000146522 #19	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT01100000263539.b.b.b.b.a.a.b.a.b.c.b.a	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36
Rhesus	MODERN SPECIES		PTPN7 (ENSMMUG00000013789)	ARL8A (ENSMMUG00000031357)	GPR37L1 (ENSMMUG00000013788) #7	ELF3 (ENSMMUG00000001929) #8	RNPEP (ENSMMUG00000001926) #9	TIMM17A (ENSMMUG00000001924) #10	LMOD1 (ENSMMUG00000001923) #11	SHISA4 (ENSMMUG00000001921) #12	IPO9 (ENSMMUG00000001916) #13	NAV1 (ENSMMUG00000001908) #15	CSRP1 (ENSMMUG00000020772) #17	ENSMMUG00000047008 #19	PHLDA3 (ENSMMUG00000061689) #18	TNNI1 (ENSMMUG00000046222) #20	LAD1 (ENSMMUG00000013507) #21	TNNT2 (ENSMMUG00000056199) #22	PKP1 (ENSMMUG00000013506) #23	IGFN1 (ENSMMUG00000013504) #24	TMEM9 (ENSMMUG00000013500) #25	ASCL5 (ENSMMUG00000017419)	CACNA1S (ENSMMUG00000017414) #26	KIF21B (ENSMMUG00000005921) #28	ENSMMUG00000052462	INAVA (ENSMMUG00000063678) #29	GPR25 (ENSMMUG00000012219) #30	CAMSAP2 (ENSMMUG00000012218) #32	DDX59 (ENSMMUG00000004268) #33	KIF14 (ENSMMUG00000004266) #34	ENSMMUG00000050830	ZNF281 (ENSMMUG00000007334)	NR5A2 (ENSMMUG00000016188) #36
Crab-eating macaque	MODERN SPECIES		ENSMFAG00000061200	ELF3 (ENSMFAG00000037333) #8	RNPEP (ENSMFAG00000001997) #9	TIMM17A (ENSMFAG00000000231) #10	LMOD1 (ENSMFAG00000039790) #11	SHISA4 (ENSMFAG00000061611) #12	IPO9 (ENSMFAG00000035917) #13	ENSMFAG00000050385	NAV1 (ENSMFAG00000029861) #15	ENSMFAG00000062599 #16	ENSMFAG00000048627	CSRP1 (ENSMFAG00000033632) #17	ENSMFAG00000024602 #19	TNNI1 (ENSMFAG00000037331) #20	LAD1 (ENSMFAG00000044742) #21	TNNT2 (ENSMFAG00000003567) #22	PKP1 (ENSMFAG00000003596) #23	ENSMFAG00000045449 #24	TMEM9 (ENSMFAG00000041944) #25	CACNA1S (ENSMFAG00000037274) #26	KIF21B (ENSMFAG00000039907) #28	ENSMFAG00000057843	INAVA (ENSMFAG00000000317) #29	CAMSAP2 (ENSMFAG00000041258) #32	DDX59 (ENSMFAG00000035416) #33	KIF14 (ENSMFAG00000045576) #34	ENSMFAG00000059218	ZNF281 (ENSMFAG00000001954)	ENSMFAG00000051342	NR5A2 (ENSMFAG00000036373) #36	ENSMFAG00000049855
Platyrrhini	ANCESTRAL SPECIES	24	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00910000147141	ENSGT00940000156637 #15	ENSGT00910000146850 #14	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT00910000146522 #19	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00910000146886 #27	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00730000110997.k.a.p.b	ENSGT00940000153391.c.b.b.o #36
Cebidae	ANCESTRAL SPECIES	23	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00910000147141	ENSGT00940000156637 #15	ENSGT00910000146850 #14	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00730000110997.k.a.p.b	ENSGT00940000153391.c.b.b.o #36	ENSGT00940000163099.h
Cebidae_a	ANCESTRAL SPECIES	11	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00910000147141	ENSGT00940000156637 #15	ENSGT00910000146850 #14	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00910000144184.q.b.b.a.b.g.b	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00730000110997.k.a.p.b	ENSGT00940000153391.c.b.b.o #36	ENSGT00940000163099.h
Capuchin	MODERN SPECIES	257		ENSCCAG00000004495	ELF3 (ENSCCAG00000026383) #8	RNPEP (ENSCCAG00000032153) #9	TIMM17A (ENSCCAG00000029261) #10	LMOD1 (ENSCCAG00000020253) #11	SHISA4 (ENSCCAG00000010420) #12	IPO9 (ENSCCAG00000021455) #13	ENSCCAG00000023690	ENSCCAG00000025971 #14	NAV1 (ENSCCAG00000036185) #15	ENSCCAG00000003885 #17	PHLDA3 (ENSCCAG00000000421) #18	TNNI1 (ENSCCAG00000023627) #20	LAD1 (ENSCCAG00000023575) #21	TNNT2 (ENSCCAG00000022583) #22	ENSCCAG00000019071	PKP1 (ENSCCAG00000019055) #23	ENSCCAG00000020090	ENSCCAG00000020569 #24	TMEM9 (ENSCCAG00000033719) #25	CACNA1S (ENSCCAG00000028827) #26	KIF21B (ENSCCAG00000032793) #28	INAVA (ENSCCAG00000025184) #29	GPR25 (ENSCCAG00000017997) #30	ENSCCAG00000032189	ENSCCAG00000025521	CAMSAP2 (ENSCCAG00000025301) #32	ENSCCAG00000029433	DDX59 (ENSCCAG00000026682) #33	KIF14 (ENSCCAG00000036921) #34
Bolivian squirrel monkey	MODERN SPECIES	141	ARL8A (ENSSBOG00000021257)	GPR37L1 (ENSSBOG00000032756) #7	ENSSBOG00000018739	ELF3 (ENSSBOG00000035951) #8	RNPEP (ENSSBOG00000028407) #9	TIMM17A (ENSSBOG00000020540) #10	LMOD1 (ENSSBOG00000030087) #11	SHISA4 (ENSSBOG00000029406) #12	IPO9 (ENSSBOG00000023990) #13	ENSSBOG00000027515	NAV1 (ENSSBOG00000029966) #15	CSRP1 (ENSSBOG00000025818) #17	PHLDA3 (ENSSBOG00000006419) #18	TNNI1 (ENSSBOG00000025005) #20	LAD1 (ENSSBOG00000026021) #21	TNNT2 (ENSSBOG00000027536) #22	ENSSBOG00000028457	PKP1 (ENSSBOG00000036168) #23	IGFN1 (ENSSBOG00000013748) #24	TMEM9 (ENSSBOG00000018806) #25	CACNA1S (ENSSBOG00000012566) #26	KIF21B (ENSSBOG00000030857) #28	INAVA (ENSSBOG00000000914) #29	GPR25 (ENSSBOG00000027419) #30	ENSSBOG00000024998	CAMSAP2 (ENSSBOG00000034399) #32	DDX59 (ENSSBOG00000035527) #33	KIF14 (ENSSBOG00000030090) #34	ZNF281 (ENSSBOG00000001320)	ENSSBOG00000023904	ENSSBOG00000023922
Marmoset	MODERN SPECIES	10	ARL8A (ENSCJAG00000005865)	GPR37L1 (ENSCJAG00000005857) #7	ENSCJAG00000070204	ENSCJAG00000070884	ENSCJAG00000070333	RNPEP (ENSCJAG00000005745) #9	TIMM17A (ENSCJAG00000041477) #10	LMOD1 (ENSCJAG00000062096) #11	SHISA4 (ENSCJAG00000040532) #12	IPO9 (ENSCJAG00000005627) #13	NAV1 (ENSCJAG00000005585) #15	CSRP1 (ENSCJAG00000081518) #17	PHLDA3 (ENSCJAG00000038715) #18	TNNI1 (ENSCJAG00000045243) #20	LAD1 (ENSCJAG00000005479) #21	TNNT2 (ENSCJAG00000005458) #22	PKP1 (ENSCJAG00000005433) #23	ENSCJAG00000005404 #24	TMEM9 (ENSCJAG00000075235) #25	ASCL5 (ENSCJAG00000042298)	CACNA1S (ENSCJAG00000005329) #26	KIF21B (ENSCJAG00000005270) #28	INAVA (ENSCJAG00000005256) #29	GPR25 (ENSCJAG00000005252) #30	CAMSAP2 (ENSCJAG00000005196) #32	DDX59 (ENSCJAG00000005183) #33	KIF14 (ENSCJAG00000005114) #34	ENSCJAG00000074834	ZNF281 (ENSCJAG00000005104)	ENSCJAG00000064182	ENSCJAG00000083529
Mas night monkey	MODERN SPECIES	958	GPR37L1 (ENSANAG00000026435) #7	ELF3 (ENSANAG00000026758) #8	RNPEP (ENSANAG00000036242) #9	TIMM17A (ENSANAG00000030639) #10	LMOD1 (ENSANAG00000033606) #11	SHISA4 (ENSANAG00000033085) #12	IPO9 (ENSANAG00000032001) #13	ENSANAG00000018451	ENSANAG00000033537 #14	NAV1 (ENSANAG00000035757) #15	CSRP1 (ENSANAG00000027361) #17	PHLDA3 (ENSANAG00000016926) #18	ENSANAG00000026569 #19	TNNI1 (ENSANAG00000032590) #20	ENSANAG00000025220 #21	TNNT2 (ENSANAG00000026643) #22	ENSANAG00000024104	ENSANAG00000022332	PKP1 (ENSANAG00000022090) #23	ENSANAG00000032968 #24	TMEM9 (ENSANAG00000034099) #25	CACNA1S (ENSANAG00000028326) #26	KIF21B (ENSANAG00000023183) #28	ENSANAG00000025015 #27	INAVA (ENSANAG00000023413) #29	GPR25 (ENSANAG00000018153) #30	CAMSAP2 (ENSANAG00000021100) #32	DDX59 (ENSANAG00000025559) #33	KIF14 (ENSANAG00000019508) #34	ENSANAG00000020588	NR5A2 (ENSANAG00000031667) #36
Tarsier	MODERN SPECIES	6006				ELF3 (ENSTSYG00000002998) #8	RNPEP (ENSTSYG00000029079) #9	TIMM17A (ENSTSYG00000011606) #10	LMOD1 (ENSTSYG00000029478) #11	SHISA4 (ENSTSYG00000033087) #12	IPO9 (ENSTSYG00000009534) #13	NAV1 (ENSTSYG00000014353) #15	CSRP1 (ENSTSYG00000006136) #17	PHLDA3 (ENSTSYG00000028139) #18	RPS20 (ENSTSYG00000030243)	TNNI1 (ENSTSYG00000037146) #20	LAD1 (ENSTSYG00000009029) #21	TNNT2 (ENSTSYG00000036459) #22	PKP1 (ENSTSYG00000004506) #23	ENSTSYG00000033602 #24	TMEM9 (ENSTSYG00000001525) #25	CACNA1S (ENSTSYG00000002790) #26	KIF21B (ENSTSYG00000006540) #28	INAVA (ENSTSYG00000005312) #29	CAMSAP2 (ENSTSYG00000008900) #32	DDX59 (ENSTSYG00000013832) #33	KIF14 (ENSTSYG00000008740) #34
Strepsirrhini	ANCESTRAL SPECIES		ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00910000147141	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00490000044158 #16	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Lemuriformes	ANCESTRAL SPECIES	26	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00910000147141	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00490000044158 #16	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Mouse lemur	MODERN SPECIES	19	PTPN7 (ENSMICG00000007442)	ARL8A (ENSMICG00000038748)	GPR37L1 (ENSMICG00000027500) #7	ELF3 (ENSMICG00000003167) #8	RNPEP (ENSMICG00000003151) #9	ENSMICG00000045286 #10	LMOD1 (ENSMICG00000001547) #11	SHISA4 (ENSMICG00000048002) #12	IPO9 (ENSMICG00000009250) #13	NAV1 (ENSMICG00000009229) #15	CSRP1 (ENSMICG00000037004) #17	PHLDA3 (ENSMICG00000043447) #18	ENSMICG00000027041	TNNI1 (ENSMICG00000004497) #20	LAD1 (ENSMICG00000026613) #21	TNNT2 (ENSMICG00000002857) #22	PKP1 (ENSMICG00000034402) #23	IGFN1 (ENSMICG00000032380) #24	TMEM9 (ENSMICG00000000342) #25	CACNA1S (ENSMICG00000011685) #26	KIF21B (ENSMICG00000011648) #28	INAVA (ENSMICG00000031575) #29	CAMSAP2 (ENSMICG00000036731) #32	DDX59 (ENSMICG00000012110) #33	KIF14 (ENSMICG00000013951) #34	NR5A2 (ENSMICG00000036896) #36	PTPRC (ENSMICG00000009392)	ATP6V1G3 (ENSMICG00000009388)	NEK7 (ENSMICG00000029301)	LHX9 (ENSMICG00000000704)	C1orf53 (ENSMICG00000026611)
Lemuriformes_a	ANCESTRAL SPECIES	12	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00910000147141	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00490000044158 #16	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Coquerels sifaka	MODERN SPECIES	1027												CSRP1 (ENSPCOG00000012092) #17	PHLDA3 (ENSPCOG00000011876) #18	TNNI1 (ENSPCOG00000028138) #20	LAD1 (ENSPCOG00000019403) #21	TNNT2 (ENSPCOG00000024410) #22	PKP1 (ENSPCOG00000015736) #23	ENSPCOG00000017922 #24	TMEM9 (ENSPCOG00000016871) #25
Greater bamboo lemur	MODERN SPECIES	19	GPR37L1 (ENSPSMG00000000609) #7	ELF3 (ENSPSMG00000000599) #8	RNPEP (ENSPSMG00000000549) #9	TIMM17A (ENSPSMG00000000499) #10	ENSPSMG00000000493 #11	SHISA4 (ENSPSMG00000000489) #12	IPO9 (ENSPSMG00000000483) #13	ENSPSMG00000000471	NAV1 (ENSPSMG00000000424) #15	ENSPSMG00000000232	ENSPSMG00000000224 #16	CSRP1 (ENSPSMG00000000197) #17	PHLDA3 (ENSPSMG00000000133) #18	TNNI1 (ENSPSMG00000000114) #20	LAD1 (ENSPSMG00000020071) #21	TNNT2 (ENSPSMG00000020011) #22	PKP1 (ENSPSMG00000019801) #23	ENSPSMG00000019757 #24	TMEM9 (ENSPSMG00000019712) #25	ASCL5 (ENSPSMG00000019702)	CACNA1S (ENSPSMG00000019681) #26
Bushbaby	MODERN SPECIES	170	ENSOGAG00000031244	PTPN7 (ENSOGAG00000025504)	ARL8A (ENSOGAG00000030870)	GPR37L1 (ENSOGAG00000001874) #7	ELF3 (ENSOGAG00000004794) #8	RNPEP (ENSOGAG00000004795) #9	ENSOGAG00000006176 #10	LMOD1 (ENSOGAG00000006170) #11	SHISA4 (ENSOGAG00000006169) #12	IPO9 (ENSOGAG00000006162) #13	NAV1 (ENSOGAG00000006152) #15	CSRP1 (ENSOGAG00000027109) #17	PHLDA3 (ENSOGAG00000028208) #18	TNNI1 (ENSOGAG00000014424) #20	LAD1 (ENSOGAG00000029505) #21	TNNT2 (ENSOGAG00000008844) #22	PKP1 (ENSOGAG00000008836) #23	ENSOGAG00000008832 #24	TMEM9 (ENSOGAG00000025006) #25	ASCL5 (ENSOGAG00000027579)	CACNA1S (ENSOGAG00000001855) #26	KIF21B (ENSOGAG00000001849) #28	ENSOGAG00000028982	INAVA (ENSOGAG00000024428) #29	GPR25 (ENSOGAG00000029134) #30	ENSOGAG00000033931	CAMSAP2 (ENSOGAG00000008928) #32	DDX59 (ENSOGAG00000008925) #33	KIF14 (ENSOGAG00000008914) #34	ZNF281 (ENSOGAG00000010366)	NR5A2 (ENSOGAG00000025622) #36
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00910000147141	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00490000044158 #16	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Tree shrew	MODERN SPECIES	757															LAD1 (ENSTBEG00000009344) #21	TNNT2 (ENSTBEG00000008727) #22	PKP1 (ENSTBEG00000007703) #23	ENSTBEG00000006851 #24	TMEM9 (ENSTBEG00000006633) #25	CACNA1S (ENSTBEG00000004297) #26	KIF21B (ENSTBEG00000002055) #28	INAVA (ENSTBEG00000001191) #29	ENSTBEG00000009419 #32
Glires	ANCESTRAL SPECIES		ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00910000147141	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00490000044158 #16	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Lagomorpha	ANCESTRAL SPECIES	15	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00490000044158 #16	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457	ENSGT00940000160882	ENSGT00940000156725
Pika	MODERN SPECIES	2755															LAD1 (ENSOPRG00000011841) #21	TNNT2 (ENSOPRG00000011815) #22	PKP1 (ENSOPRG00000011792) #23	ENSOPRG00000011771 #24
Rabbit	MODERN SPECIES	7	ARL8A (ENSOCUG00000023009)	ENSOCUG00000029129 #7	ELF3 (ENSOCUG00000007502) #8	RNPEP (ENSOCUG00000022087) #9	ENSOCUG00000007498 #10	LMOD1 (ENSOCUG00000007492) #11	SHISA4 (ENSOCUG00000007489) #12	IPO9 (ENSOCUG00000007477) #13	NAV1 (ENSOCUG00000007461) #15	ENSOCUG00000036001	ENSOCUG00000036541 #16	CSRP1 (ENSOCUG00000010299) #17	PHLDA3 (ENSOCUG00000024503) #18	TNNI1 (ENSOCUG00000010424) #20	LAD1 (ENSOCUG00000007730) #21	ENSOCUG00000015634 #22	PKP1 (ENSOCUG00000021242) #23	TMEM9 (ENSOCUG00000005561) #25	CACNA1S (ENSOCUG00000003619) #26	KIF21B (ENSOCUG00000003606) #28	ENSOCUG00000025825	INAVA (ENSOCUG00000021508) #29	CAMSAP2 (ENSOCUG00000007754) #32	DDX59 (ENSOCUG00000016514) #33	KIF14 (ENSOCUG00000016491) #34	ZNF281 (ENSOCUG00000010120)	ENSOCUG00000006240 #36	ENSOCUG00000024252	PTPRC (ENSOCUG00000011981)	ATP6V1G3 (ENSOCUG00000000239)	ENSOCUG00000022991
Rodentia	ANCESTRAL SPECIES		ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00910000147141	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Rodentia_A	ANCESTRAL SPECIES		ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Hystricomorpha	ANCESTRAL SPECIES	29	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Hystricomorpha_a	ANCESTRAL SPECIES	13	ENSGT00940000164079	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457	ENSGT00940000160882
Hystricomorpha_b	ANCESTRAL SPECIES	4	ENSGT00940000164079	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457	ENSGT00940000160882
Long-tailed chinchilla	MODERN SPECIES	113	PTPN7 (ENSCLAG00000012076)	ARL8A (ENSCLAG00000011411)	GPR37L1 (ENSCLAG00000010021) #7	ELF3 (ENSCLAG00000013075) #8	RNPEP (ENSCLAG00000010340) #9	BECN2 (ENSCLAG00000012324)	TIMM17A (ENSCLAG00000012191) #10	LMOD1 (ENSCLAG00000011784) #11	SHISA4 (ENSCLAG00000014882) #12	IPO9 (ENSCLAG00000015074) #13	NAV1 (ENSCLAG00000014432) #15	CSRP1 (ENSCLAG00000012369) #17	PHLDA3 (ENSCLAG00000013962) #18	TNNI1 (ENSCLAG00000011021) #20	LAD1 (ENSCLAG00000010186) #21	TNNT2 (ENSCLAG00000012059) #22	PKP1 (ENSCLAG00000012392) #23	ENSCLAG00000011986 #24	TMEM9 (ENSCLAG00000015016) #25	CACNA1S (ENSCLAG00000010859) #26	KIF21B (ENSCLAG00000011048) #28	ENSCLAG00000011608	INAVA (ENSCLAG00000011144) #29	GPR25 (ENSCLAG00000018046) #30	CAMSAP2 (ENSCLAG00000015462) #32	DDX59 (ENSCLAG00000011057) #33	KIF14 (ENSCLAG00000009896) #34	ZNF281 (ENSCLAG00000011950)	NR5A2 (ENSCLAG00000015239) #36	PTPRC (ENSCLAG00000016409)	ATP6V1G3 (ENSCLAG00000009890)
Degu	MODERN SPECIES	50	PTPN7 (ENSODEG00000012148)	ARL8A (ENSODEG00000011676)	GPR37L1 (ENSODEG00000011302) #7	ENSODEG00000011469 #8	RNPEP (ENSODEG00000012490) #9	TIMM17A (ENSODEG00000011642) #10	LMOD1 (ENSODEG00000010832) #11	SHISA4 (ENSODEG00000011253) #12	IPO9 (ENSODEG00000011377) #13	ENSODEG00000012083	NAV1 (ENSODEG00000010759) #15	ENSODEG00000012247 #17	PHLDA3 (ENSODEG00000019805) #18	TNNI1 (ENSODEG00000012147) #20	LAD1 (ENSODEG00000011384) #21	TNNT2 (ENSODEG00000010655) #22	ENSODEG00000012509 #23	ENSODEG00000011200 #23	ENSODEG00000019852	ENSODEG00000011293 #24	ENSODEG00000011456 #25	CACNA1S (ENSODEG00000011895) #26	KIF21B (ENSODEG00000010856) #28	ENSODEG00000010579	INAVA (ENSODEG00000010120) #29	GPR25 (ENSODEG00000019988) #30	CAMSAP2 (ENSODEG00000009640) #32	DDX59 (ENSODEG00000009771) #33	ENSODEG00000010595 #34	ZNF281 (ENSODEG00000010277)	ENSODEG00000019710
Guinea pig	MODERN SPECIES	12	LGR6 (ENSCPOG00000035804)	PTPN7 (ENSCPOG00000003034)	ARL8A (ENSCPOG00000023243)	GPR37L1 (ENSCPOG00000031335) #7	ELF3 (ENSCPOG00000022807) #8	RNPEP (ENSCPOG00000002589) #9	TIMM17A (ENSCPOG00000035786) #10	LMOD1 (ENSCPOG00000035527) #11	SHISA4 (ENSCPOG00000000765) #12	IPO9 (ENSCPOG00000000762) #13	NAV1 (ENSCPOG00000000758) #15	CSRP1 (ENSCPOG00000037754) #17	PHLDA3 (ENSCPOG00000036401) #18	TNNI1 (ENSCPOG00000026774) #20	LAD1 (ENSCPOG00000005299) #21	TNNT2 (ENSCPOG00000015324) #22	PKP1 (ENSCPOG00000008647) #23	TMEM9 (ENSCPOG00000015557) #25	CACNA1S (ENSCPOG00000024686) #26	KIF21B (ENSCPOG00000001811) #28	ENSCPOG00000022252	INAVA (ENSCPOG00000001810) #29	ENSCPOG00000021748 #30	CAMSAP2 (ENSCPOG00000001809) #32	DDX59 (ENSCPOG00000008420) #33	ENSCPOG00000001994	ENSCPOG00000034914 #34	ENSCPOG00000001993	NR5A2 (ENSCPOG00000008775) #36	PTPRC (ENSCPOG00000009460)	ATP6V1G3 (ENSCPOG00000036154)
Naked mole-rat female	MODERN SPECIES	16	ARL8A (ENSHGLG00000004366)	GPR37L1 (ENSHGLG00000004730) #7	ENSHGLG00000005529 #8	ENSHGLG00000039596	ENSHGLG00000037733	TIMM17A (ENSHGLG00000048696) #10	LMOD1 (ENSHGLG00000008255) #11	ENSHGLG00000036592 #12	IPO9 (ENSHGLG00000011536) #13	ENSHGLG00000046641	NAV1 (ENSHGLG00000011311) #15	CSRP1 (ENSHGLG00000033272) #17	PHLDA3 (ENSHGLG00000050870) #18	TNNI1 (ENSHGLG00000017757) #20	LAD1 (ENSHGLG00000006023) #21	TNNT2 (ENSHGLG00000007221) #22	PKP1 (ENSHGLG00000003695) #23	ENSHGLG00000003914 #24	TMEM9 (ENSHGLG00000004230) #25	ASCL5 (ENSHGLG00000004297)	CACNA1S (ENSHGLG00000005845) #26	KIF21B (ENSHGLG00000007186) #28	ENSHGLG00000009106	INAVA (ENSHGLG00000010860) #29	GPR25 (ENSHGLG00000013000) #30	CAMSAP2 (ENSHGLG00000014631) #32	DDX59 (ENSHGLG00000016068) #33	ENSHGLG00000047325	ENSHGLG00000021199	ENSHGLG00000011815	KIF14 (ENSHGLG00000018503) #34
Sciuridae	ANCESTRAL SPECIES		ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Marmotini	ANCESTRAL SPECIES	60	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f.a.a #10	ENSGT00390000017780.f.a.b #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Marmotini_b	ANCESTRAL SPECIES	70	ENSGT00940000159939	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f.a.b #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Squirrel	MODERN SPECIES	167	LGR6 (ENSSTOG00000027585)	PTPN7 (ENSSTOG00000027740)	ARL8A (ENSSTOG00000013990)	GPR37L1 (ENSSTOG00000009822) #7	ELF3 (ENSSTOG00000024484) #8	RNPEP (ENSSTOG00000009813) #9	ENSSTOG00000031975 #10	LMOD1 (ENSSTOG00000022103) #11	SHISA4 (ENSSTOG00000024090) #12	IPO9 (ENSSTOG00000009786) #13	NAV1 (ENSSTOG00000009754) #15	CSRP1 (ENSSTOG00000009746) #17	PHLDA3 (ENSSTOG00000020561) #18	TNNI1 (ENSSTOG00000012852) #20	LAD1 (ENSSTOG00000019836) #21	TNNT2 (ENSSTOG00000025070) #22	PKP1 (ENSSTOG00000012820) #23	ENSSTOG00000022283 #24	TMEM9 (ENSSTOG00000023985) #25	ASCL5 (ENSSTOG00000032112)	CACNA1S (ENSSTOG00000004823) #26	KIF21B (ENSSTOG00000011868) #28	ENSSTOG00000019817	INAVA (ENSSTOG00000026808) #29	GPR25 (ENSSTOG00000023200) #30	CAMSAP2 (ENSSTOG00000013058) #32	DDX59 (ENSSTOG00000027030) #33	ENSSTOG00000029716 #34	ZNF281 (ENSSTOG00000023051)	NR5A2 (ENSSTOG00000024925) #36	PTPRC (ENSSTOG00000031147)
Arctic ground squirrel	MODERN SPECIES	181	LGR6 (ENSUPAG00010008512)	PTPN7 (ENSUPAG00010008685)	ARL8A (ENSUPAG00010008698)	GPR37L1 (ENSUPAG00010008707) #7	ELF3 (ENSUPAG00010008713) #8	RNPEP (ENSUPAG00010008733) #9	ENSUPAG00010008782 #10	LMOD1 (ENSUPAG00010008800) #11	SHISA4 (ENSUPAG00010008814) #12	IPO9 (ENSUPAG00010008826) #13	NAV1 (ENSUPAG00010008863) #15	CSRP1 (ENSUPAG00010009066) #17	PHLDA3 (ENSUPAG00010009080) #18	ENSUPAG00010009091 #20	LAD1 (ENSUPAG00010009149) #21	TNNT2 (ENSUPAG00010009182) #22	PKP1 (ENSUPAG00010009781) #23	IGFN1 (ENSUPAG00010009795) #24	TMEM9 (ENSUPAG00010009811) #25	ASCL5 (ENSUPAG00010009821)	CACNA1S (ENSUPAG00010009832) #26	KIF21B (ENSUPAG00010010173) #28	ENSUPAG00010010216	INAVA (ENSUPAG00010010242) #29	GPR25 (ENSUPAG00010010255) #30	CAMSAP2 (ENSUPAG00010010267) #32	ENSUPAG00010010418	DDX59 (ENSUPAG00010010425) #33	KIF14 (ENSUPAG00010010451) #34
Alpin marmot	MODERN SPECIES	12	PTPN7 (ENSMMMG00000012755)	ARL8A (ENSMMMG00000012740)	GPR37L1 (ENSMMMG00000012733) #7	ELF3 (ENSMMMG00000012729) #8	RNPEP (ENSMMMG00000012694) #9	TIMM17A (ENSMMMG00000012674) #10	LMOD1 (ENSMMMG00000012662) #11	SHISA4 (ENSMMMG00000012653) #12	IPO9 (ENSMMMG00000012630) #13	ENSMMMG00000012624	NAV1 (ENSMMMG00000012492) #15	CSRP1 (ENSMMMG00000012480) #17	PHLDA3 (ENSMMMG00000012477) #18	TNNI1 (ENSMMMG00000012445) #20	LAD1 (ENSMMMG00000012435) #21	TNNT2 (ENSMMMG00000011614) #22	PKP1 (ENSMMMG00000011570) #23	ENSMMMG00000011539 #24	TMEM9 (ENSMMMG00000011525) #25	ASCL5 (ENSMMMG00000011524)	CACNA1S (ENSMMMG00000011045) #26	KIF21B (ENSMMMG00000010947) #28	ENSMMMG00000010908	INAVA (ENSMMMG00000010880) #29	CAMSAP2 (ENSMMMG00000010760) #32	ENSMMMG00000010749	DDX59 (ENSMMMG00000010740) #33	KIF14 (ENSMMMG00000010693) #34	ZNF281 (ENSMMMG00000010689)	ENSMMMG00000010688	NR5A2 (ENSMMMG00000010654) #36
Eurasian red squirrel	MODERN SPECIES	3	PTPN7 (ENSSVLG00005010973)	ARL8A (ENSSVLG00005011356)	GPR37L1 (ENSSVLG00005011428) #7	ELF3 (ENSSVLG00005011486) #8	RNPEP (ENSSVLG00005011614) #9	TIMM17A (ENSSVLG00005011702) #10	LMOD1 (ENSSVLG00005011748) #11	SHISA4 (ENSSVLG00005011797) #12	IPO9 (ENSSVLG00005011871) #13	NAV1 (ENSSVLG00005011978) #15	ENSSVLG00005012087	CSRP1 (ENSSVLG00005012132) #17	PHLDA3 (ENSSVLG00005012234) #18	TNNI1 (ENSSVLG00005012287) #20	LAD1 (ENSSVLG00005012477) #21	TNNT2 (ENSSVLG00005012953) #22	PKP1 (ENSSVLG00005013167) #23	ENSSVLG00005013348 #24	TMEM9 (ENSSVLG00005013426) #25	ASCL5 (ENSSVLG00005013539)	CACNA1S (ENSSVLG00005014029) #26	KIF21B (ENSSVLG00005015004) #28	INAVA (ENSSVLG00005015965) #29	GPR25 (ENSSVLG00005016061) #30	CAMSAP2 (ENSSVLG00005016097) #32	ENSSVLG00005016183	DDX59 (ENSSVLG00005016206) #33	KIF14 (ENSSVLG00005016247) #34	ZNF281 (ENSSVLG00005016488)	NR5A2 (ENSSVLG00005016544) #36	ENSSVLG00005016739
Rodentia_B	ANCESTRAL SPECIES		ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00910000147141	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Kangaroo rat	MODERN SPECIES	354	Lgr6 (ENSDORG00000005413)	Ptpn7 (ENSDORG00000010483)	Arl8a (ENSDORG00000010481)	Gpr37l1 (ENSDORG00000010480) #7	Elf3 (ENSDORG00000013470) #8	Rnpep (ENSDORG00000013469) #9	ENSDORG00000013467 #10	Lmod1 (ENSDORG00000013465) #11	Shisa4 (ENSDORG00000013464) #12	ENSDORG00000025169	Nav1 (ENSDORG00000013461) #15	Csrp1 (ENSDORG00000016686) #17	Phlda3 (ENSDORG00000026191) #18	Tnni1 (ENSDORG00000006351) #20	Lad1 (ENSDORG00000006348) #21	Tnnt2 (ENSDORG00000006345) #22	Pkp1 (ENSDORG00000006343) #23	Tmem9 (ENSDORG00000003110) #25	ENSDORG00000028639	Cacna1s (ENSDORG00000015402) #26	Kif21b (ENSDORG00000015395) #28	Mroh3 (ENSDORG00000030033)	ENSDORG00000011995 #29	Camsap2 (ENSDORG00000023981) #32	Ddx59 (ENSDORG00000007702) #33	ENSDORG00000028875 #34	Zfp281 (ENSDORG00000002833)	Nr5a2 (ENSDORG00000006587) #36	Ptprc (ENSDORG00000016235)	Atp6v1g3 (ENSDORG00000025262)	Nek7 (ENSDORG00000011235)
Myomorpha	ANCESTRAL SPECIES	16	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00910000147141	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Muroidea	ANCESTRAL SPECIES	9	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00910000147141	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Muroidea_A	ANCESTRAL SPECIES	12	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00910000147141	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Cricetidae	ANCESTRAL SPECIES	13	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00910000147141	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Cricetinae	ANCESTRAL SPECIES	4	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457	ENSGT01040000241084
Chinese hamster chok1gshd	MODERN SPECIES	2	Arl8a (ENSCGRG00001020777)	Gpr37l1 (ENSCGRG00001020435) #7	ENSCGRG00001002861	Elf3 (ENSCGRG00001021475) #8	Rnpep (ENSCGRG00001019333) #9	Timm17a (ENSCGRG00001014322) #10	Lmod1 (ENSCGRG00001013273) #11	Shisa4 (ENSCGRG00001011813) #12	Ipo9 (ENSCGRG00001019976) #13	Nav1 (ENSCGRG00001003396) #15	ENSCGRG00001021412	Csrp1 (ENSCGRG00001022010) #17	Phlda3 (ENSCGRG00001002541) #18	Tnni1 (ENSCGRG00001014916) #20	Lad1 (ENSCGRG00001023271) #21	Tnnt2 (ENSCGRG00001018430) #22	Pkp1 (ENSCGRG00001014719) #23	Tmem9 (ENSCGRG00001012626) #25	Ascl5 (ENSCGRG00001002662)	Cacna1s (ENSCGRG00001000583) #26	ENSCGRG00001002509	Kif21b (ENSCGRG00001017388) #28	Mroh3 (ENSCGRG00001002341)	Inava (ENSCGRG00001018254) #29	Gpr25 (ENSCGRG00001002130) #30	Camsap2 (ENSCGRG00001012686) #32	Ddx59 (ENSCGRG00001012693) #33	Kif14 (ENSCGRG00001012823) #34	Zfp281 (ENSCGRG00001010400)	Nr5a2 (ENSCGRG00001014323) #36	Ptprc (ENSCGRG00001018920)
Golden Hamster	MODERN SPECIES	656	Arl8a (ENSMAUG00000005741)	Gpr37l1 (ENSMAUG00000015811) #7	Rnpep (ENSMAUG00000008745) #9	Elf3 (ENSMAUG00000004082) #8	Timm17a (ENSMAUG00000000698) #10	ENSMAUG00000006910	Lmod1 (ENSMAUG00000009299) #11	Shisa4 (ENSMAUG00000015952) #12	Ipo9 (ENSMAUG00000020318) #13	Nav1 (ENSMAUG00000001179) #15	ENSMAUG00000008856	Csrp1 (ENSMAUG00000013464) #17	Phlda3 (ENSMAUG00000017752) #18	Tnni1 (ENSMAUG00000012811) #20	Lad1 (ENSMAUG00000005981) #21	Tnnt2 (ENSMAUG00000009854) #22	Pkp1 (ENSMAUG00000013189) #23	Tmem9 (ENSMAUG00000011504) #25	Cacna1s (ENSMAUG00000004666) #26	Kif21b (ENSMAUG00000008131) #28	Mroh3 (ENSMAUG00000013385)	ENSMAUG00000013531 #29	Camsap2 (ENSMAUG00000009233) #32	Ddx59 (ENSMAUG00000015701) #33	ENSMAUG00000001105 #34	Zfp281 (ENSMAUG00000013077)	ENSMAUG00000008634 #36	Ptprc (ENSMAUG00000020268)	ENSMAUG00000020084	Atp6v1g3 (ENSMAUG00000018525)	Nek7 (ENSMAUG00000017907)
Cricetidae_B	ANCESTRAL SPECIES	8	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00910000147141	ENSGT00940000156637 #15	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Northern American deer mouse	MODERN SPECIES	2	Ptpn7 (ENSPEMG00000017641)	Arl8a (ENSPEMG00000009150)	Gpr37l1 (ENSPEMG00000011069) #7	Elf3 (ENSPEMG00000009981) #8	Rnpep (ENSPEMG00000009590) #9	Timm17a (ENSPEMG00000013557) #10	Lmod1 (ENSPEMG00000015971) #11	Shisa4 (ENSPEMG00000019105) #12	Ipo9 (ENSPEMG00000017658) #13	ENSPEMG00000024689	Nav1 (ENSPEMG00000019267) #15	Csrp1 (ENSPEMG00000017819) #17	Phlda3 (ENSPEMG00000019183) #18	Tnni1 (ENSPEMG00000012413) #20	Lad1 (ENSPEMG00000008947) #21	Tnnt2 (ENSPEMG00000017808) #22	Pkp1 (ENSPEMG00000017401) #23	Igfn1 (ENSPEMG00000026548) #24	Tmem9 (ENSPEMG00000010559) #25	Ascl5 (ENSPEMG00000024954)	Cacna1s (ENSPEMG00000010619) #26	Kif21b (ENSPEMG00000005001) #28	ENSPEMG00000029892	Mroh3 (ENSPEMG00000000462)	Inava (ENSPEMG00000000963) #29	Gpr25 (ENSPEMG00000026623) #30	Camsap2 (ENSPEMG00000011208) #32	Ddx59 (ENSPEMG00000010715) #33	Kif14 (ENSPEMG00000031000) #34	Zfp281 (ENSPEMG00000004890)	ENSPEMG00000027734
Prairie vole	MODERN SPECIES	14	Elf3 (ENSMOCG00000011101) #8	Rnpep (ENSMOCG00000022091) #9	ENSMOCG00000011417 #10	Lmod1 (ENSMOCG00000021948) #11	Shisa4 (ENSMOCG00000022223) #12	Ipo9 (ENSMOCG00000022988) #13	Nav1 (ENSMOCG00000020147) #15	ENSMOCG00000012209	ENSMOCG00000003765	Rab7b (ENSMOCG00000015192)	ENSMOCG00000018588	Csrp1 (ENSMOCG00000003621) #17	Phlda3 (ENSMOCG00000007137) #18	Tnni1 (ENSMOCG00000013469) #20	Lad1 (ENSMOCG00000012808) #21	Tnnt2 (ENSMOCG00000012562) #22	Pkp1 (ENSMOCG00000016418) #23	Tmem9 (ENSMOCG00000021738) #25	Cacna1s (ENSMOCG00000022841) #26	Kif21b (ENSMOCG00000019937) #28	Mroh3 (ENSMOCG00000021368)	ENSMOCG00000015576 #29	Camsap2 (ENSMOCG00000016651) #32	ENSMOCG00000005363	Ddx59 (ENSMOCG00000016551) #33	ENSMOCG00000003804	ENSMOCG00000022166	ENSMOCG00000006538 #34	Zfp281 (ENSMOCG00000011619)	ENSMOCG00000006261	ENSMOCG00000010577 #36
Murinae	ANCESTRAL SPECIES	11	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Mus	ANCESTRAL SPECIES	5	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Mus_A	ANCESTRAL SPECIES	5	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f.g #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Ryukyu mouse	MODERN SPECIES		Lgr6 (MGP_CAROLIEiJ_G0014630)	Ptpn7 (MGP_CAROLIEiJ_G0014631)	Arl8a (MGP_CAROLIEiJ_G0014632)	Gpr37l1 (MGP_CAROLIEiJ_G0014633) #7	Elf3 (MGP_CAROLIEiJ_G0014634) #8	Rnpep (MGP_CAROLIEiJ_G0014635) #9	Timm17a (MGP_CAROLIEiJ_G0014636) #10	Lmod1 (MGP_CAROLIEiJ_G0014637) #11	Shisa4 (MGP_CAROLIEiJ_G0014638) #12	Ipo9 (MGP_CAROLIEiJ_G0014639) #13	Nav1 (MGP_CAROLIEiJ_G0014640) #15	Csrp1 (MGP_CAROLIEiJ_G0014641) #17	Phlda3 (MGP_CAROLIEiJ_G0014642) #18	Tnni1 (MGP_CAROLIEiJ_G0014643) #20	Lad1 (MGP_CAROLIEiJ_G0014644) #21	Tnnt2 (MGP_CAROLIEiJ_G0014645) #22	Pkp1 (MGP_CAROLIEiJ_G0014646) #23	MGP_CAROLIEiJ_G0014647 #24	Tmem9 (MGP_CAROLIEiJ_G0014648) #25	Ascl5 (MGP_CAROLIEiJ_G0014649)	Cacna1s (MGP_CAROLIEiJ_G0014650) #26	Kif21b (MGP_CAROLIEiJ_G0014651) #28	MGP_CAROLIEiJ_G0014652	Inava (MGP_CAROLIEiJ_G0014653) #29	Gpr25 (MGP_CAROLIEiJ_G0014654) #30	Camsap2 (MGP_CAROLIEiJ_G0014655) #32	Ddx59 (MGP_CAROLIEiJ_G0014656) #33	Kif14 (MGP_CAROLIEiJ_G0014657) #34	Zfp281 (MGP_CAROLIEiJ_G0014658)	Nr5a2 (MGP_CAROLIEiJ_G0014659) #36	Ptprc (MGP_CAROLIEiJ_G0014660)
Mus_B	ANCESTRAL SPECIES	7	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f.g #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Mouse	MODERN SPECIES		Ptprv (ENSMUSG00000097993)	Ptpn7 (ENSMUSG00000031506)	Arl8a (ENSMUSG00000026426)	Gpr37l1 (ENSMUSG00000026424) #7	Elf3 (ENSMUSG00000003051) #8	Rnpep (ENSMUSG00000041926) #9	Timm17a (ENSMUSG00000062580) #10	Lmod1 (ENSMUSG00000048096) #11	Shisa4 (ENSMUSG00000041889) #12	Ipo9 (ENSMUSG00000041879) #13	Nav1 (ENSMUSG00000009418) #15	Csrp1 (ENSMUSG00000026421) #17	Phlda3 (ENSMUSG00000041801) #18	Tnni1 (ENSMUSG00000026418) #20	Lad1 (ENSMUSG00000041782) #21	Tnnt2 (ENSMUSG00000026414) #22	Pkp1 (ENSMUSG00000026413) #23	Igfn1 (ENSMUSG00000051985) #24	Tmem9 (ENSMUSG00000026411) #25	Ascl5 (ENSMUSG00000097918)	Cacna1s (ENSMUSG00000026407) #26	Kif21b (ENSMUSG00000041642) #28	Mroh3 (ENSMUSG00000087230)	Inava (ENSMUSG00000041605) #29	Gpr25 (ENSMUSG00000052759) #30	Camsap2 (ENSMUSG00000041570) #32	Ddx59 (ENSMUSG00000026404) #33	Kif14 (ENSMUSG00000041498) #34	Zfp281 (ENSMUSG00000041483)	Nr5a2 (ENSMUSG00000026398) #36	Ptprc (ENSMUSG00000026395)
Mus_C	ANCESTRAL SPECIES	1	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f.g #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
spretus	MODERN SPECIES		Lgr6 (MGP_SPRETEiJ_G0015437)	Ptpn7 (MGP_SPRETEiJ_G0015438)	Arl8a (MGP_SPRETEiJ_G0015439)	Gpr37l1 (MGP_SPRETEiJ_G0015440) #7	Elf3 (MGP_SPRETEiJ_G0015441) #8	Rnpep (MGP_SPRETEiJ_G0015442) #9	Timm17a (MGP_SPRETEiJ_G0015443) #10	Lmod1 (MGP_SPRETEiJ_G0015444) #11	Shisa4 (MGP_SPRETEiJ_G0015445) #12	Ipo9 (MGP_SPRETEiJ_G0015446) #13	Nav1 (MGP_SPRETEiJ_G0015447) #15	Csrp1 (MGP_SPRETEiJ_G0015448) #17	Phlda3 (MGP_SPRETEiJ_G0015449) #18	Tnni1 (MGP_SPRETEiJ_G0015450) #20	Lad1 (MGP_SPRETEiJ_G0015451) #21	Tnnt2 (MGP_SPRETEiJ_G0015452) #22	Pkp1 (MGP_SPRETEiJ_G0015453) #23	MGP_SPRETEiJ_G0015454 #24	Tmem9 (MGP_SPRETEiJ_G0015455) #25	Ascl5 (MGP_SPRETEiJ_G0015456)	Cacna1s (MGP_SPRETEiJ_G0015457) #26	Kif21b (MGP_SPRETEiJ_G0015458) #28	Mroh3 (MGP_SPRETEiJ_G0015459)	Inava (MGP_SPRETEiJ_G0015460) #29	Gpr25 (MGP_SPRETEiJ_G0015461) #30	Camsap2 (MGP_SPRETEiJ_G0015462) #32	Ddx59 (MGP_SPRETEiJ_G0015463) #33	Kif14 (MGP_SPRETEiJ_G0015464) #34	Zfp281 (MGP_SPRETEiJ_G0015465)	Nr5a2 (MGP_SPRETEiJ_G0015466) #36	Ptprc (MGP_SPRETEiJ_G0015467)
Steppe mouse	MODERN SPECIES	3299	Gpr37l1 (ENSMSIG00000016930) #7	Elf3 (ENSMSIG00000016889) #8	Rnpep (ENSMSIG00000016833) #9	ENSMSIG00000016819	Timm17a (ENSMSIG00000016796) #10	Lmod1 (ENSMSIG00000016771) #11	ENSMSIG00000016765 #12	Ipo9 (ENSMSIG00000016676) #13	ENSMSIG00000016668	ENSMSIG00000016660	Nav1 (ENSMSIG00000016388) #15	Csrp1 (ENSMSIG00000016352) #17	Phlda3 (ENSMSIG00000016346) #18	Tnni1 (ENSMSIG00000016248) #20	Lad1 (ENSMSIG00000016232) #21	Tnnt2 (ENSMSIG00000013795) #22	Pkp1 (ENSMSIG00000013746) #23	Igfn1 (ENSMSIG00000013674) #24	ENSMSIG00000013605 #25	Ascl5 (ENSMSIG00000013596)	Cacna1s (ENSMSIG00000013188) #26	Kif21b (ENSMSIG00000012992) #28	Mroh3 (ENSMSIG00000012959)	Inava (ENSMSIG00000012900) #29	ENSMSIG00000012897	Gpr25 (ENSMSIG00000012892) #30	Camsap2 (ENSMSIG00000012647) #32	ENSMSIG00000012627	Ddx59 (ENSMSIG00000012596) #33	ENSMSIG00000012582	Kif14 (ENSMSIG00000012445) #34
Shrew mouse	MODERN SPECIES	18	Lgr6 (MGP_PahariEiJ_G0027866)	Ptpn7 (MGP_PahariEiJ_G0027867)	Arl8a (MGP_PahariEiJ_G0027868)	Gpr37l1 (MGP_PahariEiJ_G0027869) #7	Elf3 (MGP_PahariEiJ_G0027870) #8	Rnpep (MGP_PahariEiJ_G0027871) #9	Timm17a (MGP_PahariEiJ_G0027872) #10	Lmod1 (MGP_PahariEiJ_G0027873) #11	Shisa4 (MGP_PahariEiJ_G0027874) #12	Ipo9 (MGP_PahariEiJ_G0027875) #13	Nav1 (MGP_PahariEiJ_G0027876) #15	Csrp1 (MGP_PahariEiJ_G0027877) #17	Phlda3 (MGP_PahariEiJ_G0027878) #18	Tnni1 (MGP_PahariEiJ_G0027879) #20	Lad1 (MGP_PahariEiJ_G0027880) #21	Tnnt2 (MGP_PahariEiJ_G0027881) #22	Pkp1 (MGP_PahariEiJ_G0027882) #23	MGP_PahariEiJ_G0027883 #24	Tmem9 (MGP_PahariEiJ_G0027884) #25	Ascl5 (MGP_PahariEiJ_G0027885)	Cacna1s (MGP_PahariEiJ_G0027886) #26	Kif21b (MGP_PahariEiJ_G0027887) #28	MGP_PahariEiJ_G0027888	Inava (MGP_PahariEiJ_G0027889) #29	Gpr25 (MGP_PahariEiJ_G0027890) #30	Camsap2 (MGP_PahariEiJ_G0027891) #32	Ddx59 (MGP_PahariEiJ_G0027892) #33	Kif14 (MGP_PahariEiJ_G0027893) #34	Zfp281 (MGP_PahariEiJ_G0027894)	Nr5a2 (MGP_PahariEiJ_G0027895) #36	Ptprc (MGP_PahariEiJ_G0027896)
Rat	MODERN SPECIES	4	Ptpn7 (ENSRNOG00000005807)	Arl8a (ENSRNOG00000005988)	Gpr37l1 (ENSRNOG00000006237) #7	Elf3 (ENSRNOG00000006330) #8	Rnpep (ENSRNOG00000006720) #9	Timm17a (ENSRNOG00000007040) #10	Lmod1 (ENSRNOG00000051548) #11	Shisa4 (ENSRNOG00000007369) #12	Ipo9 (ENSRNOG00000007418) #13	Nav1 (ENSRNOG00000008425) #15	AABR07020999.1 (ENSRNOG00000026400)	Csrp1 (ENSRNOG00000008937) #17	Phlda3 (ENSRNOG00000009068) #18	Tnni1 (ENSRNOG00000009073) #20	Lad1 (ENSRNOG00000009144) #21	Tnnt2 (ENSRNOG00000033734) #22	Pkp1 (ENSRNOG00000010076) #23	Igfn1 (ENSRNOG00000026087) #24	Tmem9 (ENSRNOG00000010204) #25	Ascl5 (ENSRNOG00000033391)	Cacna1s (ENSRNOG00000046231) #26	Kif21b (ENSRNOG00000008471) #28	Mroh3 (ENSRNOG00000025987)	LOC103691922 (ENSRNOG00000025964)	Inava (ENSRNOG00000025948) #29	Gpr25 (ENSRNOG00000008603) #30	Camsap2 (ENSRNOG00000008741) #32	AABR07021008.1 (ENSRNOG00000030278)	Ddx59 (ENSRNOG00000042451) #33	Kif14 (ENSRNOG00000037211) #34	ENSRNOG00000069163
Upper Galilee mountains blind mole rat	MODERN SPECIES	699	Lgr6 (ENSNGAG00000006200)	Ptpn7 (ENSNGAG00000021336)	Arl8a (ENSNGAG00000007576)	Gpr37l1 (ENSNGAG00000005067) #7	Elf3 (ENSNGAG00000019716) #8	Rnpep (ENSNGAG00000023647) #9	Timm17a (ENSNGAG00000020765) #10	Lmod1 (ENSNGAG00000004559) #11	Shisa4 (ENSNGAG00000014499) #12	Ipo9 (ENSNGAG00000014956) #13	Nav1 (ENSNGAG00000024038) #15	Csrp1 (ENSNGAG00000019381) #17	Phlda3 (ENSNGAG00000022425) #18	Tnni1 (ENSNGAG00000023756) #20	Lad1 (ENSNGAG00000024290) #21	Tnnt2 (ENSNGAG00000021109) #22	Pkp1 (ENSNGAG00000001435) #23	Tmem9 (ENSNGAG00000017087) #25	Cacna1s (ENSNGAG00000011324) #26	Kif21b (ENSNGAG00000023527) #28	Mroh3 (ENSNGAG00000024074)	ENSNGAG00000014587 #29	Gpr25 (ENSNGAG00000001594) #30	ENSNGAG00000022050	Camsap2 (ENSNGAG00000024043) #32	Ddx59 (ENSNGAG00000021782) #33	ENSNGAG00000014777 #34	Zfp281 (ENSNGAG00000020911)	ENSNGAG00000024180	ENSNGAG00000014002 #36	ENSNGAG00000002284
Lesser Egyptian jerboa	MODERN SPECIES	193	Lgr6 (ENSJJAG00000023003)	Ptpn7 (ENSJJAG00000020438)	Arl8a (ENSJJAG00000023105)	Gpr37l1 (ENSJJAG00000022800) #7	Elf3 (ENSJJAG00000021509) #8	Rnpep (ENSJJAG00000017365) #9	ENSJJAG00000016864 #10	Lmod1 (ENSJJAG00000015762) #11	Shisa4 (ENSJJAG00000015452) #12	Ipo9 (ENSJJAG00000012560) #13	Nav1 (ENSJJAG00000000946) #15	Csrp1 (ENSJJAG00000023165) #17	Phlda3 (ENSJJAG00000012425) #18	Tnni1 (ENSJJAG00000011268) #20	Lad1 (ENSJJAG00000010044) #21	Tnnt2 (ENSJJAG00000008781) #22	Pkp1 (ENSJJAG00000007707) #23	Igfn1 (ENSJJAG00000001570) #24
Laurasiatheria	ANCESTRAL SPECIES	25	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00490000044158 #16	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000154709.a.a #22
Hedgehog	MODERN SPECIES	1955																TNNT2 (ENSEEUG00000009623) #22
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00490000044158 #16	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Artiodactyla	ANCESTRAL SPECIES	25	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00490000044158 #16	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Suina	ANCESTRAL SPECIES	53	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Pig	MODERN SPECIES	1	PTPN7 (ENSSSCG00000037669)	ARL8A (ENSSSCG00000036967)	GPR37L1 (ENSSSCG00000038768) #7	ELF3 (ENSSSCG00000010922) #8	RNPEP (ENSSSCG00000034151) #9	TIMM17A (ENSSSCG00000037431) #10	LMOD1 (ENSSSCG00000031201) #11	SHISA4 (ENSSSCG00000054480) #12	IPO9 (ENSSSCG00000039843) #13	ENSSSCG00000031634	NAV1 (ENSSSCG00000010915) #15	CSRP1 (ENSSSCG00000020976) #17	PHLDA3 (ENSSSCG00000057685) #18	TNNI1 (ENSSSCG00000024061) #20	ENSSSCG00000021624 #21	TNNT2 (ENSSSCG00000023031) #22	PKP1 (ENSSSCG00000030694) #23	ENSSSCG00000036948 #24	TMEM9 (ENSSSCG00000027928) #25	ASCL5 (ENSSSCG00000050131)	CACNA1S (ENSSSCG00000024784) #26	KIF21B (ENSSSCG00000021706) #28	ENSSSCG00000033737	INAVA (ENSSSCG00000032735) #29	GPR25 (ENSSSCG00000055738) #30	CAMSAP2 (ENSSSCG00000027314) #32	DDX59 (ENSSSCG00000024444) #33	KIF14 (ENSSSCG00000010912) #34	ZNF281 (ENSSSCG00000010911)	NR5A2 (ENSSSCG00000024975) #36	PTPRC (ENSSSCG00000010908)
Chacoan peccary	MODERN SPECIES	55															ENSCWAG00000002131 #21	TNNT2 (ENSCWAG00000001504) #22	PKP1 (ENSCWAG00000001421) #23	ENSCWAG00000001380 #24	TMEM9 (ENSCWAG00000001350) #25	ASCL5 (ENSCWAG00000001341)	CACNA1S (ENSCWAG00000001109) #26	KIF21B (ENSCWAG00000000725) #28	INAVA (ENSCWAG00000000614) #29	GPR25 (ENSCWAG00000000593) #30	CAMSAP2 (ENSCWAG00000000560) #32	DDX59 (ENSCWAG00000000529) #33	ENSCWAG00000000508	ENSCWAG00000000484	ENSCWAG00000000471	ENSCWAG00000000456	ENSCWAG00000000451
Artiodactyla_a	ANCESTRAL SPECIES	26	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00490000044158 #16	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Artiodactyla_b	ANCESTRAL SPECIES	26	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00490000044158 #16	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Cetacea	ANCESTRAL SPECIES	23	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00490000044158 #16	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Odontoceti	ANCESTRAL SPECIES	24	ENSGT00940000159939	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Odontoceti_a	ANCESTRAL SPECIES	27	ENSGT00940000159939	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457	ENSGT01040000241084
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00940000159939	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457	ENSGT01040000241084
Monodontidae	ANCESTRAL SPECIES		ENSGT00940000159939	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000154276.jb.a.c.b	ENSGT00940000159457
Narwhal	MODERN SPECIES	304	LGR6 (ENSMMNG00015006740)	PTPN7 (ENSMMNG00015006811)	ARL8A (ENSMMNG00015006858)	GPR37L1 (ENSMMNG00015006882) #7	ELF3 (ENSMMNG00015006948) #8	RNPEP (ENSMMNG00015006968) #9	TIMM17A (ENSMMNG00015007002) #10	LMOD1 (ENSMMNG00015007021) #11	SHISA4 (ENSMMNG00015007040) #12	IPO9 (ENSMMNG00015007070) #13	NAV1 (ENSMMNG00015007173) #15	CSRP1 (ENSMMNG00015007418) #17	PHLDA3 (ENSMMNG00015007455) #18	TNNI1 (ENSMMNG00015007478) #20	LAD1 (ENSMMNG00015007527) #21	TNNT2 (ENSMMNG00015007610) #22	PKP1 (ENSMMNG00015007798) #23	ENSMMNG00015007863 #24	TMEM9 (ENSMMNG00015007956) #25	ASCL5 (ENSMMNG00015007978)	CACNA1S (ENSMMNG00015008061) #26	KIF21B (ENSMMNG00015008258) #28	INAVA (ENSMMNG00015008375) #29	GPR25 (ENSMMNG00015008389) #30	CAMSAP2 (ENSMMNG00015008404) #32	DDX59 (ENSMMNG00015008435) #33	KIF14 (ENSMMNG00015008463) #34	ZNF281 (ENSMMNG00015008480)	NR5A2 (ENSMMNG00015008494) #36	ENSMMNG00015008512	PTPRC (ENSMMNG00015008549)
Beluga whale	MODERN SPECIES	88	LGR6 (ENSDLEG00000018577)	PTPN7 (ENSDLEG00000018522)	ARL8A (ENSDLEG00000018473)	GPR37L1 (ENSDLEG00000018462) #7	ELF3 (ENSDLEG00000018450) #8	RNPEP (ENSDLEG00000018432) #9	TIMM17A (ENSDLEG00000018424) #10	LMOD1 (ENSDLEG00000018414) #11	SHISA4 (ENSDLEG00000018401) #12	IPO9 (ENSDLEG00000018006) #13	NAV1 (ENSDLEG00000016948) #15	CSRP1 (ENSDLEG00000016900) #17	PHLDA3 (ENSDLEG00000016892) #18	TNNI1 (ENSDLEG00000016846) #20	LAD1 (ENSDLEG00000016820) #21	TNNT2 (ENSDLEG00000016787) #22	PKP1 (ENSDLEG00000016756) #23	ENSDLEG00000016632 #24	TMEM9 (ENSDLEG00000016598) #25	ASCL5 (ENSDLEG00000016589)	CACNA1S (ENSDLEG00000015694) #26	KIF21B (ENSDLEG00000011744) #28	INAVA (ENSDLEG00000011485) #29	GPR25 (ENSDLEG00000011479) #30	CAMSAP2 (ENSDLEG00000011414) #32	DDX59 (ENSDLEG00000011394) #33	KIF14 (ENSDLEG00000011293) #34	ZNF281 (ENSDLEG00000011278)	NR5A2 (ENSDLEG00000011266) #36	ENSDLEG00000011253	PTPRC (ENSDLEG00000011151)
Vaquita	MODERN SPECIES		LGR6 (ENSPSNG00000001971)	PTPN7 (ENSPSNG00000001920)	ARL8A (ENSPSNG00000001896)	GPR37L1 (ENSPSNG00000001866) #7	ELF3 (ENSPSNG00000001852) #8	RNPEP (ENSPSNG00000001822) #9	TIMM17A (ENSPSNG00000001798) #10	LMOD1 (ENSPSNG00000001777) #11	SHISA4 (ENSPSNG00000001762) #12	IPO9 (ENSPSNG00000001703) #13	NAV1 (ENSPSNG00000001494) #15	CSRP1 (ENSPSNG00000001358) #17	ENSPSNG00000001332 #18	TNNI1 (ENSPSNG00000001299) #20	ENSPSNG00000001250 #21	TNNT2 (ENSPSNG00000000969) #22	PKP1 (ENSPSNG00000000846) #23	ENSPSNG00000000770 #24	TMEM9 (ENSPSNG00000000699) #25	ASCL5 (ENSPSNG00000000672)	CACNA1S (ENSPSNG00000000547) #26	KIF21B (ENSPSNG00000000419) #28	INAVA (ENSPSNG00000000352) #29	GPR25 (ENSPSNG00000000336) #30	CAMSAP2 (ENSPSNG00000000269) #32	DDX59 (ENSPSNG00000000216) #33	KIF14 (ENSPSNG00000000173) #34	ZNF281 (ENSPSNG00000000068)	NR5A2 (ENSPSNG00000005973) #36	PTPRC (ENSPSNG00000005542)	ENSPSNG00000005435
Dolphin	MODERN SPECIES	3633															LAD1 (ENSTTRG00000001403) #21	TNNT2 (ENSTTRG00000001402) #22
Sperm whale	MODERN SPECIES	15	UBE2T (ENSPCTG00005004428)	LGR6 (ENSPCTG00005004452)	PTPN7 (ENSPCTG00005004500)	ARL8A (ENSPCTG00005004581)	GPR37L1 (ENSPCTG00005004617) #7	ELF3 (ENSPCTG00005004631) #8	RNPEP (ENSPCTG00005004672) #9	TIMM17A (ENSPCTG00005004795) #10	LMOD1 (ENSPCTG00005004826) #11	SHISA4 (ENSPCTG00005004845) #12	IPO9 (ENSPCTG00005004872) #13	NAV1 (ENSPCTG00005004971) #15	TMEM9 (ENSPCTG00005005640) #25	TNNI1 (ENSPCTG00005005662) #20	LAD1 (ENSPCTG00005005693) #21	TNNT2 (ENSPCTG00005005775) #22	PKP1 (ENSPCTG00005005833) #23	ENSPCTG00005005910 #28	ENSPCTG00005000216	INAVA (ENSPCTG00005000237) #29	GPR25 (ENSPCTG00005000267) #30	CAMSAP2 (ENSPCTG00005000406) #32	DDX59 (ENSPCTG00005000564) #33	KIF14 (ENSPCTG00005000675) #34	ZNF281 (ENSPCTG00005000947)	NR5A2 (ENSPCTG00005000979) #36	ENSPCTG00005001025	PTPRC (ENSPCTG00005001084)	ENSPCTG00005001241	ATP6V1G3 (ENSPCTG00005001258)	NEK7 (ENSPCTG00005001276)
Blue whale	DUPLICATION
Blue whale	MODERN SPECIES		GPR37L1 (ENSBMSG00010004434) #7	ELF3 (ENSBMSG00010004386) #8	RNPEP (ENSBMSG00010004329) #9	ENSBMSG00010004310 #10	LMOD1 (ENSBMSG00010004293) #11	SHISA4 (ENSBMSG00010004280) #12	IPO9 (ENSBMSG00010004243) #13	ENSBMSG00010004234	NAV1 (ENSBMSG00010004070) #15	ENSBMSG00010004030 #16	CSRP1 (ENSBMSG00010004016) #17	PHLDA3 (ENSBMSG00010004005) #18	TNNI1 (ENSBMSG00010003967) #20	LAD1 (ENSBMSG00010003924) #21	ENSBMSG00010003893 #22	ENSBMSG00010003631 #22	PKP1 (ENSBMSG00010003592) #23	ENSBMSG00010003500 #24	TMEM9 (ENSBMSG00010003466) #25	ASCL5 (ENSBMSG00010003459)	CACNA1S (ENSBMSG00010003329) #26	KIF21B (ENSBMSG00010002784) #28	ENSBMSG00010002702	INAVA (ENSBMSG00010002656) #29	GPR25 (ENSBMSG00010002638) #30	CAMSAP2 (ENSBMSG00010002599) #32	DDX59 (ENSBMSG00010002568) #33	KIF14 (ENSBMSG00010002487) #34	ZNF281 (ENSBMSG00010002478)	NR5A2 (ENSBMSG00010002371) #36	PTPRC (ENSBMSG00010002155)
Blue whale	MODERN SPECIES		ARL8A (ENSBMSG00010004456)	GPR37L1 (ENSBMSG00010004434) #7	ELF3 (ENSBMSG00010004386) #8	RNPEP (ENSBMSG00010004329) #9	ENSBMSG00010004310 #10	LMOD1 (ENSBMSG00010004293) #11	SHISA4 (ENSBMSG00010004280) #12	IPO9 (ENSBMSG00010004243) #13	ENSBMSG00010004234	NAV1 (ENSBMSG00010004070) #15	ENSBMSG00010004030 #16	CSRP1 (ENSBMSG00010004016) #17	PHLDA3 (ENSBMSG00010004005) #18	TNNI1 (ENSBMSG00010003967) #20	LAD1 (ENSBMSG00010003924) #21	ENSBMSG00010003893 #22	ENSBMSG00010003631 #22	PKP1 (ENSBMSG00010003592) #23	ENSBMSG00010003500 #24	TMEM9 (ENSBMSG00010003466) #25	ASCL5 (ENSBMSG00010003459)	CACNA1S (ENSBMSG00010003329) #26	KIF21B (ENSBMSG00010002784) #28	ENSBMSG00010002702	INAVA (ENSBMSG00010002656) #29	GPR25 (ENSBMSG00010002638) #30	CAMSAP2 (ENSBMSG00010002599) #32	DDX59 (ENSBMSG00010002568) #33	KIF14 (ENSBMSG00010002487) #34	ZNF281 (ENSBMSG00010002478)	NR5A2 (ENSBMSG00010002371) #36
Pecora	ANCESTRAL SPECIES	33	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256.a.b #21	ENSGT00940000154709.a.a #22
Percora_a	ANCESTRAL SPECIES	15	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256.a.b #21	ENSGT00940000154709.a.a #22
Bovidae	ANCESTRAL SPECIES	15	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256.a.b #21	ENSGT00940000154709.a.a #22
Bovinae	ANCESTRAL SPECIES	12	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256.a.b #21	ENSGT00940000154709.a.a #22
Bos	ANCESTRAL SPECIES	12	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256.a.b #21	ENSGT00940000154709.a.a #22
Bos_b	ANCESTRAL SPECIES	27	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256.a.b #21	ENSGT00940000154709.a.a #22
Hybrid Bos Indicus	MODERN SPECIES	7	PTPN7 (ENSBIXG00005019348)	ARL8A (ENSBIXG00005019330)	GPR37L1 (ENSBIXG00005003138) #7	ELF3 (ENSBIXG00005019288) #8	RNPEP (ENSBIXG00005019254) #9	TIMM17A (ENSBIXG00005019240) #10	LMOD1 (ENSBIXG00005019224) #11	SHISA4 (ENSBIXG00005003129) #12	IPO9 (ENSBIXG00005019192) #13	NAV1 (ENSBIXG00005019125) #15	ENSBIXG00005018849	CSRP1 (ENSBIXG00005018838) #17	PHLDA3 (ENSBIXG00005018761) #18	TNNI1 (ENSBIXG00005018737) #20	ENSBIXG00005018579 #21	TNNT2 (ENSBIXG00005018552) #22	ENSBIXG00005018446	ENSBIXG00005018388
Cow	MODERN SPECIES	7	ARL8A (ENSBTAG00000006574)	GPR37L1 (ENSBTAG00000014992) #7	ENSBTAG00000052377	ELF3 (ENSBTAG00000008756) #8	RNPEP (ENSBTAG00000013726) #9	TIMM17A (ENSBTAG00000047059) #10	LMOD1 (ENSBTAG00000021576) #11	SHISA4 (ENSBTAG00000050933) #12	IPO9 (ENSBTAG00000004452) #13	NAV1 (ENSBTAG00000021919) #15	ENSBTAG00000049173	CSRP1 (ENSBTAG00000016057) #17	PHLDA3 (ENSBTAG00000053086) #18	TNNI1 (ENSBTAG00000047231) #20	LAD1 (ENSBTAG00000024663) #21	TNNT2 (ENSBTAG00000045789) #22
Bos_a	ANCESTRAL SPECIES	8	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00490000044158 #16	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256.a.b #21	ENSGT00940000154709.a.a #22
Domestic yak	MODERN SPECIES	5	PTPN7 (ENSBGRG00000025844)	ARL8A (ENSBGRG00000025855)	GPR37L1 (ENSBGRG00000025872) #7	ELF3 (ENSBGRG00000025881) #8	RNPEP (ENSBGRG00000025901) #9	TIMM17A (ENSBGRG00000025944) #10	LMOD1 (ENSBGRG00000025951) #11	SHISA4 (ENSBGRG00000025959) #12	IPO9 (ENSBGRG00000025970) #13	NAV1 (ENSBGRG00000026038) #15	ENSBGRG00000026117	CSRP1 (ENSBGRG00000026123) #17	PHLDA3 (ENSBGRG00000026131) #18	TNNI1 (ENSBGRG00000026141) #20	ENSBGRG00000026162 #21	TNNT2 (ENSBGRG00000026185) #22	ENSBGRG00000026223	ENSBGRG00000026232	TMEM183A (ENSBGRG00000026236)	PPFIA4 (ENSBGRG00000026254)	MYOG (ENSBGRG00000026269)	ENSBGRG00000026271	ENSBGRG00000026277	ENSBGRG00000026283	ADORA1 (ENSBGRG00000026296)	MYBPH (ENSBGRG00000026302)	CHI3L1 (ENSBGRG00000026316)	BTG2 (ENSBGRG00000026320)	FMOD (ENSBGRG00000026323)	PRELP (ENSBGRG00000007735)	OPTC (ENSBGRG00000007805)
Wild yak	MODERN SPECIES	2259																TNNT2 (ENSBMUG00000021815) #22	ENSBMUG00000021668
Caprinae	ANCESTRAL SPECIES	12	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256.a.b #21	ENSGT00940000154709.a.a #22
Rambouillet Sheep	MODERN SPECIES	3	LGR6 (ENSOARG00020020999)	ARL8A (ENSOARG00020021359)	GPR37L1 (ENSOARG00020021479) #7	ELF3 (ENSOARG00020021509) #8	RNPEP (ENSOARG00020021541) #9	TIMM17A (ENSOARG00020021696) #10	LMOD1 (ENSOARG00020021739) #11	SHISA4 (ENSOARG00020021795) #12	IPO9 (ENSOARG00020021871) #13	NAV1 (ENSOARG00020022097) #15	ENSOARG00020022794	CSRP1 (ENSOARG00020022818) #17	PHLDA3 (ENSOARG00020022868) #18	TNNI1 (ENSOARG00020022891) #20	ENSOARG00020023028 #21	TNNT2 (ENSOARG00020023133) #22
Goat	MODERN SPECIES	7	LGR6 (ENSCHIG00000024412)	ENSCHIG00000020312	PTPN7 (ENSCHIG00000013625)	ARL8A (ENSCHIG00000003028)	GPR37L1 (ENSCHIG00000010542) #7	NAV1 (ENSCHIG00000008057) #15	IPO9 (ENSCHIG00000015356) #13	LMOD1 (ENSCHIG00000007211) #11	TIMM17A (ENSCHIG00000010947) #10	RNPEP (ENSCHIG00000020776) #9	ELF3 (ENSCHIG00000010930) #8	CSRP1 (ENSCHIG00000020588) #17	PHLDA3 (ENSCHIG00000013383) #18	TNNI1 (ENSCHIG00000016517) #20	ENSCHIG00000003679 #21	TNNT2 (ENSCHIG00000020704) #22
Camelidae	ANCESTRAL SPECIES	42	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00490000044158 #16	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457	ENSGT00940000160882	ENSGT00940000156725	ENSGT00940000158821
Arabian camel	MODERN SPECIES	15	PTPN7 (ENSCDRG00005020059)	ARL8A (ENSCDRG00005020087)	GPR37L1 (ENSCDRG00005020122) #7	ELF3 (ENSCDRG00005020134) #8	RNPEP (ENSCDRG00005020217) #9	TIMM17A (ENSCDRG00005021099) #10	LMOD1 (ENSCDRG00005021102) #11	SHISA4 (ENSCDRG00005021109) #12	IPO9 (ENSCDRG00005021144) #13	NAV1 (ENSCDRG00005021260) #15	ENSCDRG00005021529 #16	CSRP1 (ENSCDRG00005021534) #17	PHLDA3 (ENSCDRG00005021547) #18	TNNI1 (ENSCDRG00005021556) #20	LAD1 (ENSCDRG00005021572) #21	TNNT2 (ENSCDRG00005021583) #22	ENSCDRG00005021587	ENSCDRG00005021591 #23	ENSCDRG00005008917 #23	ENSCDRG00005008992 #24	TMEM9 (ENSCDRG00005009277) #25	CACNA1S (ENSCDRG00005009360) #26	KIF21B (ENSCDRG00005010084) #28	ENSCDRG00005010315	CAMSAP2 (ENSCDRG00005010867) #32	DDX59 (ENSCDRG00005011107) #33	KIF14 (ENSCDRG00005011188) #34	ENSCDRG00005011500	ZNF281 (ENSCDRG00005011534)	NR5A2 (ENSCDRG00005011572) #36	PTPRC (ENSCDRG00005011706)
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00490000044158 #16	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Carnivora	ANCESTRAL SPECIES	14	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00490000044158 #16	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Caniformia	ANCESTRAL SPECIES	10	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00490000044158 #16	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Caniformia_b	ANCESTRAL SPECIES	8	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00490000044158 #16	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Ursidae	ANCESTRAL SPECIES	4	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00490000044158 #16	ENSGT00940000156777.i.a #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a.b #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b.j #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Ursus	ANCESTRAL SPECIES	42	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00940000156777.i.a #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a.b #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b.j #25	ENSGT00940000158289.b #26	ENSGT00940000159650.w #28	ENSGT00940000163702	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457	ENSGT00940000160882	ENSGT00940000156725	ENSGT00940000158821
Polar bear	MODERN SPECIES	119	PTPN7 (ENSUMAG00000004301)	ARL8A (ENSUMAG00000004297)	GPR37L1 (ENSUMAG00000004293) #7	ELF3 (ENSUMAG00000004291) #8	RNPEP (ENSUMAG00000004166) #9	TIMM17A (ENSUMAG00000004146) #10	LMOD1 (ENSUMAG00000004144) #11	ENSUMAG00000004142 #12	IPO9 (ENSUMAG00000003122) #13	ENSUMAG00000002999	NAV1 (ENSUMAG00000002355) #15	CSRP1 (ENSUMAG00000002257) #17	PHLDA3 (ENSUMAG00000002242) #18	TNNI1 (ENSUMAG00000002193) #20	ENSUMAG00000002086 #21	TNNT2 (ENSUMAG00000002039) #22	PKP1 (ENSUMAG00000001991) #23	ENSUMAG00000001880 #24	TMEM9 (ENSUMAG00000001857) #25	CACNA1S (ENSUMAG00000001163) #26	KIF21B (ENSUMAG00000000108) #28	ENSUMAG00000025395	CAMSAP2 (ENSUMAG00000025377) #32	DDX59 (ENSUMAG00000025376) #33	KIF14 (ENSUMAG00000025374) #34	ZNF281 (ENSUMAG00000025373)	NR5A2 (ENSUMAG00000025370) #36	PTPRC (ENSUMAG00000025366)	ATP6V1G3 (ENSUMAG00000025365)	NEK7 (ENSUMAG00000025364)	LHX9 (ENSUMAG00000025362)
American black bear	MODERN SPECIES	250									ENSUAMG00000004304	NAV1 (ENSUAMG00000004315) #15	ENSUAMG00000004799	CSRP1 (ENSUAMG00000004802) #17	PHLDA3 (ENSUAMG00000004805) #18	TNNI1 (ENSUAMG00000004814) #20	LAD1 (ENSUAMG00000004832) #21	TNNT2 (ENSUAMG00000004838) #22	PKP1 (ENSUAMG00000004844) #23	ENSUAMG00000004862 #24	TMEM9 (ENSUAMG00000004883) #25	CACNA1S (ENSUAMG00000004912) #26
Giant Panda	MODERN SPECIES	18	ENSAMEG00000011970	GPR37L1 (ENSAMEG00000011979) #7	ELF3 (ENSAMEG00000011987) #8	RNPEP (ENSAMEG00000012001) #9	TIMM17A (ENSAMEG00000012030) #10	LMOD1 (ENSAMEG00000012044) #11	SHISA4 (ENSAMEG00000012048) #12	IPO9 (ENSAMEG00000012052) #13	ENSAMEG00000026338	NAV1 (ENSAMEG00000012095) #15	ENSAMEG00000030436 #16	ENSAMEG00000012114 #17	PHLDA3 (ENSAMEG00000019920) #18	TNNI1 (ENSAMEG00000012134) #20	LAD1 (ENSAMEG00000012147) #21	TNNT2 (ENSAMEG00000012160) #22	PKP1 (ENSAMEG00000012222) #23	ENSAMEG00000012240 #24	TMEM9 (ENSAMEG00000012248) #25	ASCL5 (ENSAMEG00000024919)	CACNA1S (ENSAMEG00000012260) #26	KIF21B (ENSAMEG00000012441) #28	ENSAMEG00000012549	INAVA (ENSAMEG00000023774) #29	GPR25 (ENSAMEG00000028427) #30	CAMSAP2 (ENSAMEG00000012560) #32	DDX59 (ENSAMEG00000012596) #33	KIF14 (ENSAMEG00000012611) #34	ZNF281 (ENSAMEG00000030714)	NR5A2 (ENSAMEG00000012650) #36	PTPRC (ENSAMEG00000012707)
Mustelinae	ANCESTRAL SPECIES	48	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00490000044158 #16	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
American mink	MODERN SPECIES	41	ARL8A (ENSNVIG00000014610)	GPR37L1 (ENSNVIG00000014599) #7	ELF3 (ENSNVIG00000014579) #8	RNPEP (ENSNVIG00000014525) #9	TIMM17A (ENSNVIG00000014506) #10	LMOD1 (ENSNVIG00000014488) #11	SHISA4 (ENSNVIG00000014476) #12	IPO9 (ENSNVIG00000014439) #13	ENSNVIG00000014434	NAV1 (ENSNVIG00000014243) #15	ENSNVIG00000014233 #16	CSRP1 (ENSNVIG00000014217) #17	PHLDA3 (ENSNVIG00000014203) #18	TNNI1 (ENSNVIG00000014154) #20	LAD1 (ENSNVIG00000014122) #21	TNNT2 (ENSNVIG00000013882) #22	PKP1 (ENSNVIG00000013826) #23	ENSNVIG00000013788 #24	TMEM9 (ENSNVIG00000013736) #25	ASCL5 (ENSNVIG00000013717)	CACNA1S (ENSNVIG00000013578) #26	KIF21B (ENSNVIG00000013391) #28	ENSNVIG00000013349	INAVA (ENSNVIG00000013329) #29	GPR25 (ENSNVIG00000013317) #30	CAMSAP2 (ENSNVIG00000013194) #32	DDX59 (ENSNVIG00000013171) #33	KIF14 (ENSNVIG00000013095) #34	NR5A2 (ENSNVIG00000013054) #36	ENSNVIG00000013032	PTPRC (ENSNVIG00000012972)
Ferret	MODERN SPECIES	215	PTPN7 (ENSMPUG00000010988)	ARL8A (ENSMPUG00000010959)	GPR37L1 (ENSMPUG00000010953) #7	ELF3 (ENSMPUG00000010932) #8	RNPEP (ENSMPUG00000010929) #9	TIMM17A (ENSMPUG00000010908) #10	LMOD1 (ENSMPUG00000010900) #11	SHISA4 (ENSMPUG00000010884) #12	IPO9 (ENSMPUG00000010874) #13	NAV1 (ENSMPUG00000010860) #15	ENSMPUG00000010859 #16	CSRP1 (ENSMPUG00000010813) #17	PHLDA3 (ENSMPUG00000019256) #18	TNNI1 (ENSMPUG00000010809) #20	LAD1 (ENSMPUG00000010779) #21	TNNT2 (ENSMPUG00000010612) #22	PKP1 (ENSMPUG00000010604) #23	ENSMPUG00000010591 #24	TMEM9 (ENSMPUG00000010586) #25	CACNA1S (ENSMPUG00000010571) #26	KIF21B (ENSMPUG00000010558) #28	ENSMPUG00000010551	INAVA (ENSMPUG00000010532) #29	GPR25 (ENSMPUG00000019251) #30	ENSMPUG00000010529	CAMSAP2 (ENSMPUG00000010520) #32	DDX59 (ENSMPUG00000010489) #33	KIF14 (ENSMPUG00000010474) #34	ZNF281 (ENSMPUG00000019246)	NR5A2 (ENSMPUG00000010466) #36	PTPRC (ENSMPUG00000010447)
Canidae	ANCESTRAL SPECIES	1	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Canis_lupus	ANCESTRAL SPECIES	4	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00550000074822.g
Dog	MODERN SPECIES	35	ELF3 (ENSCAFG00845015842) #8	ENSCAFG00845016129	GPR37L1 (ENSCAFG00845016224) #7	RNPEP (ENSCAFG00845016328) #9	TIMM17A (ENSCAFG00845016456) #10	LMOD1 (ENSCAFG00845016513) #11	ENSCAFG00845016560 #12	IPO9 (ENSCAFG00845016777) #13	NAV1 (ENSCAFG00845017163) #15	ENSCAFG00845017431	ENSCAFG00845017459	CSRP1 (ENSCAFG00845017561) #17	PHLDA3 (ENSCAFG00845017736) #18	TNNI1 (ENSCAFG00845017824) #20	ENSCAFG00845017989 #21	TNNT2 (ENSCAFG00845018341) #22	ENSCAFG00845018558	PKP1 (ENSCAFG00845018597) #23	CACNA1S (ENSCAFG00845018882) #25	ASCL5 (ENSCAFG00845019036)	CACNA1S (ENSCAFG00845019094) #26	KIF21B (ENSCAFG00845019617) #28	ENSCAFG00845020528	INAVA (ENSCAFG00845020693) #29	GPR25 (ENSCAFG00845020852) #30	CAMSAP2 (ENSCAFG00845020940) #32	DDX59 (ENSCAFG00845021459) #33	KIF14 (ENSCAFG00845021665) #34	ZNF281 (ENSCAFG00845022530)	NR5A2 (ENSCAFG00845022651) #36	ENSCAFG00845022804
Dingo	MODERN SPECIES	385	PTPN7 (ENSCAFG00020016160)	ARL8A (ENSCAFG00020016164)	GPR37L1 (ENSCAFG00020016167) #7	ELF3 (ENSCAFG00020016171) #8	RNPEP (ENSCAFG00020016176) #9	TIMM17A (ENSCAFG00020016196) #10	LMOD1 (ENSCAFG00020016200) #11	SHISA4 (ENSCAFG00020016204) #12	IPO9 (ENSCAFG00020016229) #13	NAV1 (ENSCAFG00020017186) #15	ENSCAFG00020017586	ENSCAFG00020017588 #17	PHLDA3 (ENSCAFG00020017589) #18	TNNI1 (ENSCAFG00020017591) #20	ENSCAFG00020017599 #21	TNNT2 (ENSCAFG00020017603) #22	ENSCAFG00020017607 #23	ENSCAFG00020017610 #23	ENSCAFG00020017613 #24	TMEM9 (ENSCAFG00020017634) #25	CACNA1S (ENSCAFG00020017665) #26	KIF21B (ENSCAFG00020017993) #28	ENSCAFG00020018276	INAVA (ENSCAFG00020018287) #29	GPR25 (ENSCAFG00020018302) #30	CAMSAP2 (ENSCAFG00020018310) #32	DDX59 (ENSCAFG00020018385) #33	KIF14 (ENSCAFG00020018396) #34	ZNF281 (ENSCAFG00020018401)	NR5A2 (ENSCAFG00020018405) #36	ENSCAFG00020018414
Red fox	MODERN SPECIES	144	PTPN7 (ENSVVUG00000006391)	ARL8A (ENSVVUG00000006384)	GPR37L1 (ENSVVUG00000006382) #7	ELF3 (ENSVVUG00000006355) #8	RNPEP (ENSVVUG00000006350) #9	TIMM17A (ENSVVUG00000006338) #10	LMOD1 (ENSVVUG00000006318) #11	SHISA4 (ENSVVUG00000006311) #12	IPO9 (ENSVVUG00000006283) #13	NAV1 (ENSVVUG00000003520) #15	ENSVVUG00000003460	ENSVVUG00000003450 #17	PHLDA3 (ENSVVUG00000003445) #18	TNNI1 (ENSVVUG00000003441) #20	LAD1 (ENSVVUG00000003437) #21	TNNT2 (ENSVVUG00000003427) #22	PKP1 (ENSVVUG00000003417) #23	ENSVVUG00000003365 #24	TMEM9 (ENSVVUG00000003352) #25	CACNA1S (ENSVVUG00000001493) #26	ENSVVUG00000001308 #28	ENSVVUG00000001272 #28	ENSVVUG00000001254	CAMSAP2 (ENSVVUG00000001143) #32	DDX59 (ENSVVUG00000001095) #33	KIF14 (ENSVVUG00000000363) #34	ZNF281 (ENSVVUG00000000290)	ENSVVUG00000000226	NR5A2 (ENSVVUG00000000199) #36	ENSVVUG00000000137	PTPRC (ENSVVUG00000029677)
Felidae	ANCESTRAL SPECIES	11	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00490000044158 #16	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Panthera	ANCESTRAL SPECIES	19	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00490000044158 #16	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457	ENSGT00940000160882
Panthera_a	ANCESTRAL SPECIES	19	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00490000044158 #16	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457	ENSGT00940000160882
lion	MODERN SPECIES	17	PTPN7 (ENSPLOG00000019136)	ARL8A (ENSPLOG00000019053)	GPR37L1 (ENSPLOG00000019008) #7	ELF3 (ENSPLOG00000018959) #8	RNPEP (ENSPLOG00000018922) #9	TIMM17A (ENSPLOG00000018849) #10	ENSPLOG00000018780 #11	SHISA4 (ENSPLOG00000018738) #12	IPO9 (ENSPLOG00000018707) #13	ENSPLOG00000018674	NAV1 (ENSPLOG00000018352) #15	CSRP1 (ENSPLOG00000018150) #17	PHLDA3 (ENSPLOG00000018122) #18	TNNI1 (ENSPLOG00000018054) #20	LAD1 (ENSPLOG00000017961) #21	TNNT2 (ENSPLOG00000017064) #22	PKP1 (ENSPLOG00000016782) #23	ENSPLOG00000016596 #24	TMEM9 (ENSPLOG00000016522) #25	ASCL5 (ENSPLOG00000016511)	CACNA1S (ENSPLOG00000015867) #26	KIF21B (ENSPLOG00000015565) #28	INAVA (ENSPLOG00000015371) #29	GPR25 (ENSPLOG00000015350) #30	CAMSAP2 (ENSPLOG00000015249) #32	DDX59 (ENSPLOG00000015197) #33	KIF14 (ENSPLOG00000015149) #34	ZNF281 (ENSPLOG00000015094)	NR5A2 (ENSPLOG00000014898) #36	PTPRC (ENSPLOG00000014503)	ATP6V1G3 (ENSPLOG00000014408)
leopard	MODERN SPECIES	4	ARL8A (ENSPPRG00000003884)	GPR37L1 (ENSPPRG00000004165) #7	ELF3 (ENSPPRG00000004243) #8	RNPEP (ENSPPRG00000004693) #9	TIMM17A (ENSPPRG00000004744) #10	LMOD1 (ENSPPRG00000004818) #11	SHISA4 (ENSPPRG00000004936) #12	IPO9 (ENSPPRG00000005675) #13	ENSPPRG00000005945	NAV1 (ENSPPRG00000006667) #15	ENSPPRG00000020912 #16	CSRP1 (ENSPPRG00000006826) #17	PHLDA3 (ENSPPRG00000020927) #18	TNNI1 (ENSPPRG00000007499) #20	LAD1 (ENSPPRG00000007837) #21	TNNT2 (ENSPPRG00000008195) #22	PKP1 (ENSPPRG00000008592) #23	ENSPPRG00000009038 #24	TMEM9 (ENSPPRG00000009181) #25	ASCL5 (ENSPPRG00000020979)	CACNA1S (ENSPPRG00000011223) #26	KIF21B (ENSPPRG00000012700) #28	INAVA (ENSPPRG00000014149) #29	CAMSAP2 (ENSPPRG00000014625) #32	DDX59 (ENSPPRG00000016091) #33	KIF14 (ENSPPRG00000018293) #34	ZNF281 (ENSPPRG00000019603)	NR5A2 (ENSPPRG00000019738) #36	ENSPPRG00000020665	PTPRC (ENSPPRG00000023034)	ATP6V1G3 (ENSPPRG00000022815)
Tiger	MODERN SPECIES	245	ENSPTIG00000019376	ARL8A (ENSPTIG00000018939)	GPR37L1 (ENSPTIG00000018525) #7	ELF3 (ENSPTIG00000017784) #8	RNPEP (ENSPTIG00000015788) #9	TIMM17A (ENSPTIG00000014119) #10	LMOD1 (ENSPTIG00000013474) #11	SHISA4 (ENSPTIG00000012401) #12	IPO9 (ENSPTIG00000009708) #13	NAV1 (ENSPTIG00000021990) #15	ENSPTIG00000000072 #16	CSRP1 (ENSPTIG00000019372) #17	PHLDA3 (ENSPTIG00000018883) #18	TNNI1 (ENSPTIG00000015711) #20	LAD1 (ENSPTIG00000013628) #21	TNNT2 (ENSPTIG00000005262) #22	PKP1 (ENSPTIG00000017481) #23	ENSPTIG00000014968 #24	TMEM9 (ENSPTIG00000012372) #25	CACNA1S (ENSPTIG00000021055) #26	KIF21B (ENSPTIG00000011877) #28	ENSPTIG00000009582 #29	CAMSAP2 (ENSPTIG00000007466) #32	DDX59 (ENSPTIG00000007021) #33	KIF14 (ENSPTIG00000018053) #34	NR5A2 (ENSPTIG00000016043) #36
Cat	MODERN SPECIES	248	PTPN7 (ENSFCAG00000045465)	ARL8A (ENSFCAG00000018232)	GPR37L1 (ENSFCAG00000000450) #7	ELF3 (ENSFCAG00000000449) #8	RNPEP (ENSFCAG00000000448) #9	TIMM17A (ENSFCAG00000026182) #10	LMOD1 (ENSFCAG00000000446) #11	SHISA4 (ENSFCAG00000000445) #12	IPO9 (ENSFCAG00000000444) #13	ENSFCAG00000040636	NAV1 (ENSFCAG00000000443) #15	CSRP1 (ENSFCAG00000000442) #17	PHLDA3 (ENSFCAG00000036029) #18	TNNI1 (ENSFCAG00000034230) #20	LAD1 (ENSFCAG00000031969) #21	TNNT2 (ENSFCAG00000004613) #22	PKP1 (ENSFCAG00000004610) #23	IGFN1 (ENSFCAG00000004609) #24	TMEM9 (ENSFCAG00000028386) #25	ASCL5 (ENSFCAG00000044334)	CACNA1S (ENSFCAG00000004605) #26	KIF21B (ENSFCAG00000004597) #28	ENSFCAG00000028284	INAVA (ENSFCAG00000004595) #29	GPR25 (ENSFCAG00000026788) #30	CAMSAP2 (ENSFCAG00000004594) #32	DDX59 (ENSFCAG00000027373) #33	KIF14 (ENSFCAG00000025507) #34	ZNF281 (ENSFCAG00000028447)	NR5A2 (ENSFCAG00000012604) #36	ENSFCAG00000029586
Laurasiatheria_c	ANCESTRAL SPECIES	25	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Chiroptera	ANCESTRAL SPECIES	30	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457	ENSGT00940000160882
Microchiroptera	ANCESTRAL SPECIES	32	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457	ENSGT00940000160882
Greater horseshoe bat	MODERN SPECIES	19	ENSRFEG00010021326	LGR6 (ENSRFEG00010021358)	PTPN7 (ENSRFEG00010021384)	ARL8A (ENSRFEG00010021401)	GPR37L1 (ENSRFEG00010021415) #7	RNPEP (ENSRFEG00010021429) #9	TIMM17A (ENSRFEG00010021454) #10	LMOD1 (ENSRFEG00010021464) #11	SHISA4 (ENSRFEG00010021474) #12	IPO9 (ENSRFEG00010021489) #13	NAV1 (ENSRFEG00010021543) #15	CSRP1 (ENSRFEG00010021644) #17	PHLDA3 (ENSRFEG00010021661) #18	TNNI1 (ENSRFEG00010021669) #20	LAD1 (ENSRFEG00010021699) #21	TNNT2 (ENSRFEG00010021773) #22	PKP1 (ENSRFEG00010021880) #23	ENSRFEG00010021887 #24	TMEM9 (ENSRFEG00010021896) #25	CACNA1S (ENSRFEG00010013548) #26	KIF21B (ENSRFEG00010013731) #28	ENSRFEG00010013943	INAVA (ENSRFEG00010014040) #29	GPR25 (ENSRFEG00010014069) #30	CAMSAP2 (ENSRFEG00010014100) #32	DDX59 (ENSRFEG00010014264) #33	KIF14 (ENSRFEG00010014355) #34	ZNF281 (ENSRFEG00010015687)	NR5A2 (ENSRFEG00010015719) #36	PTPRC (ENSRFEG00010015946)	ATP6V1G3 (ENSRFEG00010016181)
Megabat	MODERN SPECIES	148														TNNI1 (ENSPVAG00000008372) #20	ENSPVAG00000008371 #21	TNNT2 (ENSPVAG00000008369) #22
Equus	ANCESTRAL SPECIES	41	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457	ENSGT00940000160882.f
Horse	MODERN SPECIES	23	PTPN7 (ENSECAG00000024331)	ARL8A (ENSECAG00000021194)	GPR37L1 (ENSECAG00000019422) #7	ELF3 (ENSECAG00000014608) #8	RNPEP (ENSECAG00000023740) #9	TIMM17A (ENSECAG00000021816) #10	LMOD1 (ENSECAG00000021583) #11	SHISA4 (ENSECAG00000021280) #12	IPO9 (ENSECAG00000024368) #13	ENSECAG00000050133	NAV1 (ENSECAG00000015493) #15	CSRP1 (ENSECAG00000008944) #17	PHLDA3 (ENSECAG00000006734) #18	TNNI1 (ENSECAG00000034915) #20	LAD1 (ENSECAG00000013156) #21	TNNT2 (ENSECAG00000022125) #22	PKP1 (ENSECAG00000015220) #23	ENSECAG00000013767 #24	ASCL5 (ENSECAG00000040718)	CACNA1S (ENSECAG00000018762) #26	ENSECAG00000045507 #28	ENSECAG00000023530	INAVA (ENSECAG00000022618) #29	CAMSAP2 (ENSECAG00000012562) #32	DDX59 (ENSECAG00000006958) #33	KIF14 (ENSECAG00000024694) #34	ZNF281 (ENSECAG00000024354)	NR5A2 (ENSECAG00000015418) #36	PTPRC (ENSECAG00000007192)	ENSECAG00000023881	ENSECAG00000059953
Donkey	MODERN SPECIES	23	ENSEASG00005025203	GPR37L1 (ENSEASG00005019713) #7	ELF3 (ENSEASG00005019716) #8	RNPEP (ENSEASG00005019742) #9	TIMM17A (ENSEASG00005019904) #10	LMOD1 (ENSEASG00005019905) #11	SHISA4 (ENSEASG00005019906) #12	IPO9 (ENSEASG00005019908) #13	ENSEASG00005019910	NAV1 (ENSEASG00005019916) #15	ENSEASG00005019923	CSRP1 (ENSEASG00005019925) #17	ENSEASG00005036394 #18	TNNI1 (ENSEASG00005019927) #20	LAD1 (ENSEASG00005019930) #21	TNNT2 (ENSEASG00005031447) #22	PKP1 (ENSEASG00005000088) #23	ENSEASG00005000127 #24	ENSEASG00005000303 #25	ASCL5 (ENSEASG00005024194)	CACNA1S (ENSEASG00005000518) #26	KIF21B (ENSEASG00005003075) #28	ENSEASG00005003089	INAVA (ENSEASG00005003096) #29	GPR25 (ENSEASG00005026784) #30	CAMSAP2 (ENSEASG00005003109) #32	DDX59 (ENSEASG00005003122) #33	KIF14 (ENSEASG00005003131) #34	ENSEASG00005003150	NR5A2 (ENSEASG00005003166) #36	PTPRC (ENSEASG00005003180)
Atlantogenata	ANCESTRAL SPECIES	18	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00490000044158 #16	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Xenarthra	ANCESTRAL SPECIES																	ENSGT00940000154709.a.a #22
Armadillo	MODERN SPECIES	3890															ENSDNOG00000044046	TNNT2 (ENSDNOG00000044846) #22	ENSDNOG00000043629	PKP1 (ENSDNOG00000008503) #23	ENSDNOG00000040619 #24	TMEM9 (ENSDNOG00000037372) #25	ASCL5 (ENSDNOG00000047337)	CACNA1S (ENSDNOG00000005652) #26	KIF21B (ENSDNOG00000005611) #28	INAVA (ENSDNOG00000046632) #29	GPR25 (ENSDNOG00000037605) #30	CAMSAP2 (ENSDNOG00000014289) #32	ENSDNOG00000044172
Afrotheria	ANCESTRAL SPECIES	34	ENSGT00940000164079	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431.b #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457	ENSGT00940000160882
Afrotheria_a	ANCESTRAL SPECIES	34	ENSGT00940000164079	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431.b #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457	ENSGT00940000160882
Elephant	MODERN SPECIES	71	ENSLAFG00000029343	PTPN7 (ENSLAFG00000015048)	ARL8A (ENSLAFG00000015043)	GPR37L1 (ENSLAFG00000004350) #7	ELF3 (ENSLAFG00000017701) #8	RNPEP (ENSLAFG00000017697) #9	TIMM17A (ENSLAFG00000017314) #10	LMOD1 (ENSLAFG00000012569) #11	SHISA4 (ENSLAFG00000012568) #12	IPO9 (ENSLAFG00000012565) #13	NAV1 (ENSLAFG00000012549) #15	CSRP1 (ENSLAFG00000013572) #17	PHLDA3 (ENSLAFG00000016242) #18	TNNI1 (ENSLAFG00000010118) #20	LAD1 (ENSLAFG00000012730) #21	TNNT2 (ENSLAFG00000006534) #22	PKP1 (ENSLAFG00000012725) #23	ENSLAFG00000012716 #24	ENSLAFG00000032460 #24	TMEM9 (ENSLAFG00000005152) #25	CACNA1S (ENSLAFG00000014235) #26	KIF21B (ENSLAFG00000016500) #28	ENSLAFG00000031265	INAVA (ENSLAFG00000010442) #29	GPR25 (ENSLAFG00000022308) #30	CAMSAP2 (ENSLAFG00000009699) #32	DDX59 (ENSLAFG00000030362) #33	ENSLAFG00000016791 #33	KIF14 (ENSLAFG00000016770) #34	ZNF281 (ENSLAFG00000006851)	NR5A2 (ENSLAFG00000008809) #36
Hyrax	MODERN SPECIES	1497														TNNI1 (ENSPCAG00000003631) #20	ENSPCAG00000003563 #21	TNNT2 (ENSPCAG00000003493) #22
Tenrec	MODERN SPECIES	5055																ENSETEG00000000042 #22
Marsupialia	ANCESTRAL SPECIES	3	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00900000143186	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Opossum	MODERN SPECIES	1	GPR37L1 (ENSMODG00000000574) #7	ELF3 (ENSMODG00000000545) #8	RNPEP (ENSMODG00000000527) #9	TIMM17A (ENSMODG00000000517) #10	ENSMODG00000049194	LMOD1 (ENSMODG00000000505) #11	SHISA4 (ENSMODG00000000492) #12	IPO9 (ENSMODG00000000485) #13	ENSMODG00000000466	ENSMODG00000047527	NAV1 (ENSMODG00000000459) #15	CSRP1 (ENSMODG00000000403) #17	PHLDA3 (ENSMODG00000024846) #18	TNNI1 (ENSMODG00000000395) #20	ENSMODG00000000386 #21	TNNT2 (ENSMODG00000000364) #22	PKP1 (ENSMODG00000000329) #23	ENSMODG00000000312 #24	TMEM9 (ENSMODG00000000181) #25	ASCL5 (ENSMODG00000000174)	CACNA1S (ENSMODG00000000170) #26	KIF21B (ENSMODG00000000144) #28	ENSMODG00000027326	INAVA (ENSMODG00000000006) #29	GNB1 (ENSMODG00000006881)	NADK (ENSMODG00000006845)	ENSMODG00000039082	SLC35E2B (ENSMODG00000006795)	ENSMODG00000006779	MMP23B (ENSMODG00000006736)	MIB2 (ENSMODG00000006713)
Marsupialia_b	ANCESTRAL SPECIES	6	ENSGT00940000164079	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000163702	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457
Diprotodontia	ANCESTRAL SPECIES	7	ENSGT00940000164079	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457	ENSGT00940000160882
Diprotodontia_a	ANCESTRAL SPECIES	3	ENSGT00940000164079	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00390000017780.f #10	ENSGT00940000159825 #11	ENSGT00730000111186 #12	ENSGT00390000008224 #13	ENSGT00940000156637 #15	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864	ENSGT00940000158289.b #26	ENSGT00940000159650 #28	ENSGT00940000154102.a #29	ENSGT01050000244888.a.b #30	ENSGT00950000182975.a.a.a.b #32	ENSGT00940000158639 #33	ENSGT00940000156834 #34	ENSGT00940000161586	ENSGT00940000153391.c.b.b #36	ENSGT00940000159457	ENSGT00940000160882
koala	MODERN SPECIES	99	ENSPCIG00000004945	PTPN7 (ENSPCIG00000004925)	ENSPCIG00000004915	GPR37L1 (ENSPCIG00000004904) #7	ELF3 (ENSPCIG00000004892) #8	RNPEP (ENSPCIG00000025385) #9	TIMM17A (ENSPCIG00000025390) #10	LMOD1 (ENSPCIG00000025393) #11	IPO9 (ENSPCIG00000030448) #13	ENSPCIG00000030447	NAV1 (ENSPCIG00000030446) #15	CSRP1 (ENSPCIG00000030445) #17	PHLDA3 (ENSPCIG00000030443) #18	TNNI1 (ENSPCIG00000030441) #20	ENSPCIG00000033473 #21	TNNT2 (ENSPCIG00000003891) #22	PKP1 (ENSPCIG00000023671) #23	ENSPCIG00000003726 #24	TMEM9 (ENSPCIG00000030438) #25	ASCL5 (ENSPCIG00000035177)	CACNA1S (ENSPCIG00000030425) #26	KIF21B (ENSPCIG00000030397) #28	CAMSAP2 (ENSPCIG00000030391) #32	DDX59 (ENSPCIG00000030390) #33	KIF14 (ENSPCIG00000030389) #34	ENSPCIG00000030388	ZNF281 (ENSPCIG00000030386)	NR5A2 (ENSPCIG00000030383) #36	ENSPCIG00000021891
Common wonbat	MODERN SPECIES	1114	PTPN7 (ENSVURG00010003346)	ARL8A (ENSVURG00010003356)	GPR37L1 (ENSVURG00010003364) #7	ELF3 (ENSVURG00010003381) #8	RNPEP (ENSVURG00010003412) #9	TIMM17A (ENSVURG00010003443) #10	LMOD1 (ENSVURG00010003452) #11	SHISA4 (ENSVURG00010003461) #12	IPO9 (ENSVURG00010003477) #13	NAV1 (ENSVURG00010003559) #15	ENSVURG00010003649	CSRP1 (ENSVURG00010003663) #17	PHLDA3 (ENSVURG00010003675) #18	TNNI1 (ENSVURG00010003687) #20	LAD1 (ENSVURG00010003784) #21	TNNT2 (ENSVURG00010003821) #22	PKP1 (ENSVURG00010003953) #23	ENSVURG00010003973 #24	TMEM9 (ENSVURG00010004010) #25	ASCL5 (ENSVURG00010004015)	CACNA1S (ENSVURG00010004042) #26	ENSVURG00010004103	KIF21B (ENSVURG00010004167) #28	INAVA (ENSVURG00010004280) #29	GPR25 (ENSVURG00010004293) #30	CAMSAP2 (ENSVURG00010004314) #32	DDX59 (ENSVURG00010004351) #33	KIF14 (ENSVURG00010004390) #34	ZNF281 (ENSVURG00010004492)	NR5A2 (ENSVURG00010004531) #36	PTPRC (ENSVURG00010004608)
Wallaby	MODERN SPECIES	6392																ENSMEUG00000008528 #22
Tasmanian devil	MODERN SPECIES	3	ENSSHAG00000026108	ARL8A (ENSSHAG00000025922)	GPR37L1 (ENSSHAG00000024447) #7	ELF3 (ENSSHAG00000001003) #8	RNPEP (ENSSHAG00000011469) #9	TIMM17A (ENSSHAG00000024537) #10	LMOD1 (ENSSHAG00000010819) #11	ENSSHAG00000026950 #12	IPO9 (ENSSHAG00000010437) #13	ENSSHAG00000009916	NAV1 (ENSSHAG00000007215) #15	CSRP1 (ENSSHAG00000026233) #17	PHLDA3 (ENSSHAG00000025303) #18	TNNI1 (ENSSHAG00000022760) #20	ENSSHAG00000028054 #21	TNNT2 (ENSSHAG00000002049) #22	PKP1 (ENSSHAG00000027952) #23	ENSSHAG00000000455 #24	TMEM9 (ENSSHAG00000023108) #25	ASCL5 (ENSSHAG00000025864)	CACNA1S (ENSSHAG00000001786) #26	KIF21B (ENSSHAG00000002035) #28	ENSSHAG00000003922	INAVA (ENSSHAG00000013848) #29	GPR25 (ENSSHAG00000028456) #30	CAMSAP2 (ENSSHAG00000001294) #32	DDX59 (ENSSHAG00000014781) #33	KIF14 (ENSSHAG00000014403) #34	ENSSHAG00000029772	NR5A2 (ENSSHAG00000011399) #36	PTPRC (ENSSHAG00000015523)
Platypus	MODERN SPECIES	18	FAM237A (ENSOANG00000045785)	MDH1B (ENSOANG00000000659)	ENSOANG00000020472	KLF7 (ENSOANG00000047076)	TIMM17A (ENSOANG00000043200) #10	LMOD1 (ENSOANG00000041996) #11	SHISA4 (ENSOANG00000009360) #12	IPO9 (ENSOANG00000009358) #13	ENSOANG00000009356	ENSOANG00000048097	NAV1 (ENSOANG00000009353) #15	ENSOANG00000009350 #17	PHLDA3 (ENSOANG00000009349) #18	TNNI1 (ENSOANG00000040983) #20	ENSOANG00000049867 #21	TNNT2 (ENSOANG00000012466) #22	PKP1 (ENSOANG00000038923) #23	ENSOANG00000005823 #24	TMEM9 (ENSOANG00000044717) #25	ASCL5 (ENSOANG00000046959)	CACNA1S (ENSOANG00000004594) #26	KIF21B (ENSOANG00000004596) #28	ENSOANG00000029469	INAVA (ENSOANG00000004597) #29	TMEM167B (ENSOANG00000042071)	ENSOANG00000041705	ELAPOR1 (ENSOANG00000012844)	SARS1 (ENSOANG00000009192)	ENSOANG00000000300	CELSR2 (ENSOANG00000046970)	SORT1 (ENSOANG00000015499)
Sauria	ANCESTRAL SPECIES	47	ENSGT00940000164079	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00900000143186	ENSGT00940000156637 #15	ENSGT00940000157586	ENSGT00940000166065	ENSGT00940000157067	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864
Lepidosauria	ANCESTRAL SPECIES	6	ENSGT00940000164079	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00900000143186	ENSGT00940000156637 #15	ENSGT00940000157586	ENSGT00940000166065	ENSGT00940000157067	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00970000193609	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494
Episquamata	ANCESTRAL SPECIES	1	ENSGT00940000164079	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00900000143186	ENSGT00940000156637 #15	ENSGT00940000157586	ENSGT00940000166065	ENSGT00940000157067	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00970000193609	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494
Laterata	ANCESTRAL SPECIES	3	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00900000143186	ENSGT00940000156637 #15	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00970000193609	ENSGT00390000003368	ENSGT00960000191930	ENSGT00940000163318	ENSGT00390000018003.a	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b
Common wall lizard	MODERN SPECIES	14	ENSPMRG00000003722	PTPN7 (ENSPMRG00000003714)	ARL8A (ENSPMRG00000003695)	GPR37L1 (ENSPMRG00000003690) #7	ELF3 (ENSPMRG00000003684) #8	RNPEP (ENSPMRG00000003674) #9	ENSPMRG00000003671	NAV1 (ENSPMRG00000003633) #15	SYT2 (ENSPMRG00000003620)	PPP1R12B (ENSPMRG00000003568)	ENSPMRG00000003543	CSRP1 (ENSPMRG00000003537) #17	PHLDA3 (ENSPMRG00000003529) #18	TNNI1 (ENSPMRG00000003517) #20	LAD1 (ENSPMRG00000003512) #21	TNNT2 (ENSPMRG00000003502) #22	PKP1 (ENSPMRG00000003493) #23	ENSPMRG00000003482 #24	TMEM9 (ENSPMRG00000003466) #25	NGF (ENSPMRG00000003457)	TSPAN2 (ENSPMRG00000003453)	TSHB (ENSPMRG00000003447)	ENSPMRG00000003438	ENSPMRG00000003434	ENSPMRG00000003428	ENSPMRG00000003424	ENSPMRG00000003399	SIKE1 (ENSPMRG00000003391)	CSDE1 (ENSPMRG00000003356)	NRAS (ENSPMRG00000003341)	AMPD1 (ENSPMRG00000003326)
Argentine black and white tegu	MODERN SPECIES	28	ENSSMRG00000003625	PTPN7 (ENSSMRG00000003633)	ARL8A (ENSSMRG00000003634)	GPR37L1 (ENSSMRG00000003636) #7	ELF3 (ENSSMRG00000003640) #8	RNPEP (ENSSMRG00000003643) #9	NAV1 (ENSSMRG00000003647) #15	ENSSMRG00000003676	ENSSMRG00000003681	PPP1R12B (ENSSMRG00000003847)	CSRP1 (ENSSMRG00000003915) #17	PHLDA3 (ENSSMRG00000003920) #18	ENSSMRG00000003921	TNNI1 (ENSSMRG00000003922) #20	LAD1 (ENSSMRG00000003929) #21	TNNT2 (ENSSMRG00000003935) #22	PKP1 (ENSSMRG00000003987) #23	ENSSMRG00000004001	TMEM9 (ENSSMRG00000004014) #25	NGF (ENSSMRG00000004028)	TSPAN2 (ENSSMRG00000004037)	ENSSMRG00000004046	TSHB (ENSSMRG00000004051)	ADCY10 (ENSSMRG00000004063)	ENSSMRG00000004081	ENSSMRG00000004088	ENSSMRG00000004090	SIKE1 (ENSSMRG00000004095)	CSDE1 (ENSSMRG00000004102)	NRAS (ENSSMRG00000004105)	AMPD1 (ENSSMRG00000004108)
Toxicofera	ANCESTRAL SPECIES	1	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00940000156637 #15	ENSGT00940000157586	ENSGT00940000166065	ENSGT00940000157067	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000169516	ENSGT00390000000819.b #25	ENSGT00390000007725.A.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B
Elapidae	ANCESTRAL SPECIES	1	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00940000156637 #15	ENSGT00940000157586	ENSGT00940000166065	ENSGT00940000157067	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000169516	ENSGT00390000000819.b #25	ENSGT00390000007725.A.b.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494	ENSGT00940000156361.B
Elapidae_a	ANCESTRAL SPECIES	3	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00940000156637 #15	ENSGT00940000157586	ENSGT00940000166065	ENSGT00940000157067	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000169516	ENSGT00390000000819.b.o #25	ENSGT00390000000819.b.p #25	ENSGT00390000007725.A.b.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494
Acanthophiinae	ANCESTRAL SPECIES	2	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00940000156637 #15	ENSGT00940000157586	ENSGT00940000166065	ENSGT00940000157067	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000169516	ENSGT00390000000819.b.o #25	ENSGT00390000000819.b.p #25	ENSGT00390000007725.A.b.b	ENSGT00940000157504	ENSGT00940000158152	ENSGT00390000003368	ENSGT00940000163318	ENSGT00390000018003.a	ENSGT00390000016950	ENSGT00940000158947	ENSGT00950000183011.c.a.a	ENSGT00950000182931.B.a.b	ENSGT00390000014494
Mainland tiger snake	MODERN SPECIES	141	ENSNSUG00000002668	ENSNSUG00000002648	PTPN7 (ENSNSUG00000002638)	ARL8A (ENSNSUG00000002513)	GPR37L1 (ENSNSUG00000002512) #7	ENSNSUG00000002511	ELF3 (ENSNSUG00000002509) #8	RNPEP (ENSNSUG00000002228) #9	NAV1 (ENSNSUG00000002188) #15	SYT2 (ENSNSUG00000002025)	ENSNSUG00000002022	ENSNSUG00000002018	CSRP1 (ENSNSUG00000002016) #17	PHLDA3 (ENSNSUG00000002013) #18	TNNI1 (ENSNSUG00000002009) #20	TNNT2 (ENSNSUG00000002004) #22	PKP1 (ENSNSUG00000002001) #23	ENSNSUG00000001996	TMEM9 (ENSNSUG00000001994) #25	NGF (ENSNSUG00000001992)	ENSNSUG00000001991
Eastern brown snake	MODERN SPECIES	57	LGR6 (ENSPTXG00000010042)	ENSPTXG00000010041	PTPN7 (ENSPTXG00000010040)	GPR37L1 (ENSPTXG00000010039) #7	ARL8A (ENSPTXG00000010038)	ELF3 (ENSPTXG00000010037) #8	RNPEP (ENSPTXG00000010036) #9	NAV1 (ENSPTXG00000007179) #15	SYT2 (ENSPTXG00000007169)	ENSPTXG00000007168	ENSPTXG00000007166	CSRP1 (ENSPTXG00000007698) #17	PHLDA3 (ENSPTXG00000007697) #18	TNNI1 (ENSPTXG00000007695) #20	LAD1 (ENSPTXG00000007693) #21	TNNT2 (ENSPTXG00000007691) #22	PKP1 (ENSPTXG00000007688) #23	ENSPTXG00000007683	ENSPTXG00000007682 #25	ENSPTXG00000007681 #25	ENSPTXG00000007680	TSPAN2 (ENSPTXG00000007679)	ENSPTXG00000007678	TSHB (ENSPTXG00000007677)	ENSPTXG00000007676	ENSPTXG00000007675	SIKE1 (ENSPTXG00000007673)	CSDE1 (ENSPTXG00000007667)	NRAS (ENSPTXG00000007664)	AMPD1 (ENSPTXG00000007663)	DENND2C (ENSPTXG00000007651)
Blue-lipped sea krait	MODERN SPECIES	9925																TNNT2 (ENSLLTG00000013610) #22
Indian cobra	MODERN SPECIES	2	LGR6 (ENSNNAG00000017395)	ENSNNAG00000017432	PTPN7 (ENSNNAG00000017494)	ENSNNAG00000017501	ARL8A (ENSNNAG00000017510)	GPR37L1 (ENSNNAG00000017515) #7	ELF3 (ENSNNAG00000017518) #8	RNPEP (ENSNNAG00000017525) #9	NAV1 (ENSNNAG00000017530) #15	SYT2 (ENSNNAG00000017543)	PPP1R12B (ENSNNAG00000017552)	CSRP1 (ENSNNAG00000017598) #17	PHLDA3 (ENSNNAG00000017603) #18	TNNI1 (ENSNNAG00000017605) #20	LAD1 (ENSNNAG00000017615) #21	TNNT2 (ENSNNAG00000017619) #22	PKP1 (ENSNNAG00000017633) #23	ENSNNAG00000017642	TMEM9 (ENSNNAG00000004791) #25	NGF (ENSNNAG00000004800)	TSPAN2 (ENSNNAG00000004813)	ENSNNAG00000004824	TSHB (ENSNNAG00000004836)	ENSNNAG00000004842	ENSNNAG00000004854	SIKE1 (ENSNNAG00000004872)	CSDE1 (ENSNNAG00000004895)	NRAS (ENSNNAG00000005069)	AMPD1 (ENSNNAG00000005107)	DENND2C (ENSNNAG00000005192)	BCAS2 (ENSNNAG00000005273)
Lizard	MODERN SPECIES	3	ENSACAG00000040586	ARL8A (ENSACAG00000004202)	GPR37L1 (ENSACAG00000035102) #7	ELF3 (ENSACAG00000004148) #8	RNPEP (ENSACAG00000004050) #9	ENSACAG00000037439	ENSACAG00000041397	ENSACAG00000003925 #15	ENSACAG00000003847	ENSACAG00000003745	CSRP1 (ENSACAG00000003710) #17	PHLDA3 (ENSACAG00000003708) #18	ENSACAG00000039029	TNNI1 (ENSACAG00000003672) #20	LAD1 (ENSACAG00000028869) #21	TNNT2 (ENSACAG00000003593) #22	PKP1 (ENSACAG00000003509) #23	ENSACAG00000003494	TMEM9 (ENSACAG00000003471) #25	NGF (ENSACAG00000003464)	ENSACAG00000041146	TSPAN2 (ENSACAG00000003435)	ENSACAG00000003406	TSHB (ENSACAG00000039387)	ENSACAG00000032973	ENSACAG00000043536	ENSACAG00000038160	ENSACAG00000003336	SIKE1 (ENSACAG00000003294)	ENSACAG00000036675	CSDE1 (ENSACAG00000003120)
tuatara	MODERN SPECIES	567	ELF3 (ENSSPUG00000008106) #8	RNPEP (ENSSPUG00000008150) #9	ENSSPUG00000008163 #15	ENSSPUG00000008175	ENSSPUG00000008182	ENSSPUG00000008195 #15	ENSSPUG00000008228	ENSSPUG00000008246	ENSSPUG00000008255	ENSSPUG00000008259	ENSSPUG00000008264	ENSSPUG00000008269	CSRP1 (ENSSPUG00000008280) #17	PHLDA3 (ENSSPUG00000008286) #18	TNNI1 (ENSSPUG00000008293) #20	TNNT2 (ENSSPUG00000008315) #22	PKP1 (ENSSPUG00000008330) #23	TMEM9 (ENSSPUG00000008350) #25	NGF (ENSSPUG00000008362)	TSPAN2 (ENSSPUG00000008367)	ENSSPUG00000008374	TSHB (ENSSPUG00000008387)	ENSSPUG00000008400	ENSSPUG00000008449	SIKE1 (ENSSPUG00000008647)	CSDE1 (ENSSPUG00000008714)	NRAS (ENSSPUG00000008958)
Archelosauria	ANCESTRAL SPECIES	22	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00940000156637 #15	ENSGT00940000157586	ENSGT00940000166065	ENSGT00940000157067	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864
Cryptodira	ANCESTRAL SPECIES	52	ENSGT00940000164079	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00940000156637 #15	ENSGT00940000157586	ENSGT00940000166065	ENSGT00940000157067	ENSGT00940000163452	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000169516	ENSGT00390000000819.b #25
Testudinoidea	ANCESTRAL SPECIES	22	ENSGT00940000164079	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00940000156637 #15	ENSGT00940000157586	ENSGT00940000166065	ENSGT00940000157067	ENSGT00940000163452	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000169516	ENSGT00390000000819.b #25	ENSGT00940000154679.f.b.a	ENSGT00940000160258	ENSGT00940000154679.f.a	ENSGT00940000157663	ENSGT00940000158169	ENSGT00390000015805	ENSGT00950000182981.b.f.b	ENSGT00400000022095.b	ENSGT00940000160669	ENSGT00940000156542	ENSGT00940000158860	ENSGT00940000158161
Emydidae	ANCESTRAL SPECIES	73	ENSGT00940000164079	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00940000156637 #15	ENSGT00940000157586	ENSGT00940000166065	ENSGT00940000157067	ENSGT00940000163452	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000169516	ENSGT00390000000819.b #25	ENSGT00940000154679.f.b.a	ENSGT00940000154679.f.a	ENSGT00940000157663	ENSGT00940000158169
painted turtle	MODERN SPECIES	2392													CSRP1 (ENSCPBG00000026341) #17	PHLDA3 (ENSCPBG00000026338) #18	TNNI1 (ENSCPBG00000026336) #20	TNNT2 (ENSCPBG00000026330) #22	ENSCPBG00000026328	TMEM168 (ENSCPBG00000026325)	ENSCPBG00000026323	LSMEM1 (ENSCPBG00000026321)	IFRD1 (ENSCPBG00000026318)	ZNF277 (ENSCPBG00000026314)	DOCK4 (ENSCPBG00000026305)	ENSCPBG00000026301	LRRN3 (ENSCPBG00000026300)	IMMP2L (ENSCPBG00000026298)	DNAJB9 (ENSCPBG00000026296)	THAP5 (ENSCPBG00000026295)	ENSCPBG00000026292	PNPLA8 (ENSCPBG00000026288)	NRCAM (ENSCPBG00000015741)
Three-toed box turtle	MODERN SPECIES	89	ENSTMTG00000011779	ENSTMTG00000011908	PTPN7 (ENSTMTG00000011982)	ARL8A (ENSTMTG00000012007)	GPR37L1 (ENSTMTG00000012023) #7	ELF3 (ENSTMTG00000012047) #8	RNPEP (ENSTMTG00000012090) #9	NAV1 (ENSTMTG00000012573) #15	SYT2 (ENSTMTG00000012634)	PPP1R12B (ENSTMTG00000012702)	ENSTMTG00000012796	CSRP1 (ENSTMTG00000012805) #17	PHLDA3 (ENSTMTG00000012821) #18	TNNI1 (ENSTMTG00000012834) #20	LAD1 (ENSTMTG00000012902) #21	TNNT2 (ENSTMTG00000012939) #22	PKP1 (ENSTMTG00000013130) #23	ENSTMTG00000013202	TMEM9 (ENSTMTG00000013259) #25	GSTM4 (ENSTMTG00000013282)	ENSTMTG00000013348	GPR25 (ENSTMTG00000013424) #30
Testudinidae	ANCESTRAL SPECIES	26	ENSGT00940000157365.j	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00940000156637 #15	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000163452	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000169516	ENSGT00390000000819.b #25	ENSGT00940000154679.f.b.a	ENSGT00940000160258	ENSGT00940000154679.f.b.b	ENSGT00940000158169	ENSGT00390000015805	ENSGT00950000182981.b.f.b	ENSGT00400000022095.b	ENSGT00940000160669	ENSGT00940000156542	ENSGT00940000158860	ENSGT00940000158161	ENSGT00940000158411
Abingdon island giant tortoise	MODERN SPECIES	1653	ENSCABG00000016377	ENSCABG00000016380	ENSCABG00000016382	ARL8A (ENSCABG00000016386)	ENSCABG00000016387	GPR37L1 (ENSCABG00000016389) #7	ELF3 (ENSCABG00000016391) #8	RNPEP (ENSCABG00000016399) #9	NAV1 (ENSCABG00000016457) #15	SYT2 (ENSCABG00000016459)	PPP1R12B (ENSCABG00000016479)	ENSCABG00000016482	CSRP1 (ENSCABG00000016483) #17	PHLDA3 (ENSCABG00000016485) #18	TNNI1 (ENSCABG00000016486) #20	TNNT2 (ENSCABG00000016491) #22	PKP1 (ENSCABG00000016495) #23	ENSCABG00000016499
Goode s thornscrub tortoise	MODERN SPECIES	18	UBE2T (ENSGEVG00005017349)	LGR6 (ENSGEVG00005017430)	ENSGEVG00005017566	PTPN7 (ENSGEVG00005017694)	ARL8A (ENSGEVG00005017714)	GPR37L1 (ENSGEVG00005017731) #7	ELF3 (ENSGEVG00005017757) #8	RNPEP (ENSGEVG00005017826) #9	NAV1 (ENSGEVG00005018046) #15	SYT2 (ENSGEVG00005018141)	PPP1R12B (ENSGEVG00005018278)	ENSGEVG00005018515	CSRP1 (ENSGEVG00005018528) #17	PHLDA3 (ENSGEVG00005018545) #18	TNNI1 (ENSGEVG00005018561) #20	TNNT2 (ENSGEVG00005018652) #22	PKP1 (ENSGEVG00005018759) #23	ENSGEVG00005018819	TMEM9 (ENSGEVG00005018890) #25	ENSGEVG00005018945	GSTM1 (ENSGEVG00005018961)	ENSGEVG00005018977	ENSGEVG00005019005	AHCYL1 (ENSGEVG00005019047)	STRIP1 (ENSGEVG00005019070)	ALX3 (ENSGEVG00005019111)	SLC6A17 (ENSGEVG00005019135)	KCNC4 (ENSGEVG00005019164)	RBM15 (ENSGEVG00005019171)	SLC16A4 (ENSGEVG00005019205)	LAMTOR5 (ENSGEVG00005000171)
Chinese turtle	MODERN SPECIES	500	UBE2T (ENSPSIG00000012646)	LGR6 (ENSPSIG00000011884)	ENSPSIG00000011801	PTPN7 (ENSPSIG00000011667)	ARL8A (ENSPSIG00000011488)	GPR37L1 (ENSPSIG00000011257) #7	ELF3 (ENSPSIG00000010841) #8	RNPEP (ENSPSIG00000010050) #9	NAV1 (ENSPSIG00000007958) #15	ENSPSIG00000007166	PPP1R12B (ENSPSIG00000007681)	ENSPSIG00000000048	CSRP1 (ENSPSIG00000007394) #17	TNNI1 (ENSPSIG00000007323) #20	ENSPSIG00000007313	TNNT2 (ENSPSIG00000007199) #22	PKP1 (ENSPSIG00000007049) #23	ENSPSIG00000006989	ENSPSIG00000006984	ENSPSIG00000006947 #25	INAVA (ENSPSIG00000006943) #29	SHISA4 (ENSPSIG00000006913) #12	ENSPSIG00000006910	BRPF3 (ENSPSIG00000006906)	MAPK13 (ENSPSIG00000006732)	MAPK14 (ENSPSIG00000006647)	SLC26A8 (ENSPSIG00000006559)	SRPK1 (ENSPSIG00000006364)	LHFPL5 (ENSPSIG00000006348)	CLPS (ENSPSIG00000006319)	ARMC12 (ENSPSIG00000006267)
Archosauria	ANCESTRAL SPECIES	50	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a #7	ENSGT00940000158955 #8	ENSGT00940000160431 #9	ENSGT00940000156637 #15	ENSGT00940000157586	ENSGT00940000166065	ENSGT00940000157067	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163864
Australian saltwater crocodile	MODERN SPECIES	52	DRAM2 (ENSCPRG00005006120)	CEPT1 (ENSCPRG00005006113)	DENND2D (ENSCPRG00005006083)	MYBPH (ENSCPRG00005006074)	ADORA1 (ENSCPRG00005006061)	MYOG (ENSCPRG00005006056)	PPFIA4 (ENSCPRG00005006022)	TMEM183A (ENSCPRG00005006010)	ENSCPRG00005006006	ENSCPRG00005006004	CACNA1S (ENSCPRG00005004909) #26	KIF21B (ENSCPRG00005004750) #28	CSRP1 (ENSCPRG00005004741) #17	PHLDA3 (ENSCPRG00005004738) #18	TNNI1 (ENSCPRG00005004735) #20	TNNT2 (ENSCPRG00005004703) #22	PKP1 (ENSCPRG00005004682) #23	ENSCPRG00005004667	TMEM9 (ENSCPRG00005004662) #25	ASCL5 (ENSCPRG00005004650)	ENSCPRG00005004572	LZTR1 (ENSCPRG00005004532)	IPO9 (ENSCPRG00005004522) #13	KDM5B (ENSCPRG00005004504)	ENSCPRG00005004491	RABIF (ENSCPRG00005004486)	KLHL12 (ENSCPRG00005004473)	INAVA (ENSCPRG00005004461) #29	GPR25 (ENSCPRG00005004441) #30	ENSCPRG00005004433	ENSCPRG00005004428
Aves	ANCESTRAL SPECIES	25	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000157076	ENSGT00390000008224 #13	ENSGT00940000158190	ENSGT00940000160431 #9	ENSGT00940000156637 #15	ENSGT00940000157586	ENSGT00940000166065	ENSGT00940000157067	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163962	ENSGT00390000009310	ENSGT01050000244900.a.a.a.a.a	ENSGT00950000182959.a.b.b.b	ENSGT01030000234555.a.a.b.a.a	ENSGT00940000158040	ENSGT00950000182931.A	ENSGT00950000183117.a.b	ENSGT01030000234578.B.b	ENSGT00390000017353	ENSGT00940000165883	ENSGT00940000157365
Neognathae	ANCESTRAL SPECIES	24	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000157076	ENSGT00390000008224 #13	ENSGT00940000158190	ENSGT00940000160431 #9	ENSGT00940000156637 #15	ENSGT00940000157586	ENSGT00940000166065	ENSGT00940000157067	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163962	ENSGT00390000009310	ENSGT01050000244900.a.a.a.a.a	ENSGT00950000182959.a.b.b.b	ENSGT01030000234555.a.a.b.a.a	ENSGT00940000158040	ENSGT00950000182931.A	ENSGT00950000183117.a.b	ENSGT01030000234578.B.b	ENSGT00390000017353	ENSGT00940000165883	ENSGT00940000157365
Galloanserae	ANCESTRAL SPECIES	28	ENSGT00940000159939	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000157076	ENSGT00390000008224 #13	ENSGT00940000158190	ENSGT00940000160431 #9	ENSGT00940000156637 #15	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163962	ENSGT00390000009310	ENSGT01050000244900.a.a.a.a.a	ENSGT00950000182959.a.b.b.b	ENSGT01030000234555.a.a.b.a.a	ENSGT00940000158040	ENSGT00950000182931.A	ENSGT00950000183117.a.b	ENSGT01030000234578.B.b	ENSGT00390000017353	ENSGT00940000165883	ENSGT00940000157365
Anatidae	ANCESTRAL SPECIES	38	ENSGT00940000159939	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000157076	ENSGT00390000008224 #13	ENSGT00940000158190	ENSGT00940000160431 #9	ENSGT00940000156637 #15	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163962	ENSGT00390000009310	ENSGT01050000244900.a.a.a.a.a	ENSGT00950000182959.a.b.b.b	ENSGT01030000234555.a.a.b.a.a	ENSGT00940000158040	ENSGT00950000182931.A	ENSGT00940000153835.a.b	ENSGT00470000042297	ENSGT00940000153835.a.a	ENSGT00940000158700	ENSGT00940000160187
Duck	MODERN SPECIES	18	ENSAPLG00000005477	LGR6 (ENSAPLG00000006712)	KLHL12 (ENSAPLG00000007219)	RABIF (ENSAPLG00000027144)	ENSAPLG00000007649	KDM5B (ENSAPLG00000007715)	IPO9 (ENSAPLG00000008676) #13	LZTR1 (ENSAPLG00000009376)	SYT2 (ENSAPLG00000011038)	ENSAPLG00000028213	ENSAPLG00000028831	CSRP1 (ENSAPLG00000012039) #17	PHLDA3 (ENSAPLG00000023295) #18	TNNI1 (ENSAPLG00000021735) #20	LAD1 (ENSAPLG00000021537) #21	TNNT2 (ENSAPLG00000012741) #22	ENSAPLG00000027664	PKP1 (ENSAPLG00000013591) #23	ENSAPLG00000014322 #24	TMEM9 (ENSAPLG00000022254) #25	ENSAPLG00000014428	TMEM183A (ENSAPLG00000014430)	PPFIA4 (ENSAPLG00000014630)	ADORA1 (ENSAPLG00000002300)	MYBPH (ENSAPLG00000002403)	DENND2D (ENSAPLG00000003672)	ENSAPLG00000008823	TREM2 (ENSAPLG00000008731)	ENSAPLG00000016642	ENSAPLG00000023534	ENSAPLG00000024889
Pink-footed goose	MODERN SPECIES	153	LGR6 (ENSABRG00000016304)	KLHL12 (ENSABRG00000016321)	RABIF (ENSABRG00000016340)	ENSABRG00000016345	KDM5B (ENSABRG00000016464)	IPO9 (ENSABRG00000017254) #13	LZTR1 (ENSABRG00000017579)	RNPEP (ENSABRG00000017816) #9	NAV1 (ENSABRG00000017875) #15	SYT2 (ENSABRG00000017886)	PPP1R12B (ENSABRG00000017893)	CSRP1 (ENSABRG00000017898) #17	PHLDA3 (ENSABRG00000017905) #18	TNNI1 (ENSABRG00000017918) #20	LAD1 (ENSABRG00000017940) #21	TNNT2 (ENSABRG00000017950) #22	PKP1 (ENSABRG00000017968) #23	ENSABRG00000000085	TMEM9 (ENSABRG00000000096) #25	ENSABRG00000000098	TMEM183A (ENSABRG00000000101)	PPFIA4 (ENSABRG00000000109)	ENSABRG00000000164	MYOG (ENSABRG00000000170)	ADORA1 (ENSABRG00000000178)	MYBPH (ENSABRG00000000188)	DENND2D (ENSABRG00000000230)	ENSABRG00000000303	TREM2 (ENSABRG00000000340)	ENSABRG00000000347	FOXP4 (ENSABRG00000000369)
Phasianidae	ANCESTRAL SPECIES	22	ENSGT00940000158255	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000157076	ENSGT00390000008224 #13	ENSGT00940000158190	ENSGT00940000160431 #9	ENSGT00940000156637 #15	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163962	ENSGT00390000009310	ENSGT01050000244900.a.a.a.a.a	ENSGT00950000182959.a.b.b.b	ENSGT01030000234555.a.a.b.a.a	ENSGT00940000158040	ENSGT00950000182931.A	ENSGT00950000183117.a.b	ENSGT01030000234578.B.b	ENSGT00390000017353	ENSGT00940000165883	ENSGT00940000157365
Phasianidae_b	ANCESTRAL SPECIES	22	ENSGT00940000158255	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000157076	ENSGT00390000008224 #13	ENSGT00940000158190	ENSGT00940000160431 #9	ENSGT00940000156637 #15	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163962	ENSGT00390000009310	ENSGT01050000244900.a.a.a.a.a	ENSGT00950000182959.a.b.b.b	ENSGT01030000234555.a.a.b.a.a	ENSGT00940000158040	ENSGT00950000182931.A	ENSGT00950000183117.a.b	ENSGT01030000234578.B.b	ENSGT00390000017353	ENSGT00940000165883	ENSGT00940000157365
Turkey	MODERN SPECIES	20	ENSMGAG00000005257	ENSMGAG00000005274	ENSMGAG00000005236	ENSMGAG00000005215	ENSMGAG00000005149	ENSMGAG00000005150	MYOG (ENSMGAG00000002212)	ENSMGAG00000002090	ENSMGAG00000002056 #25	ENSMGAG00000002066	ENSMGAG00000002067	CSRP1 (ENSMGAG00000002016) #17	PHLDA3 (ENSMGAG00000021472) #18	TNNI1 (ENSMGAG00000001811) #20	LAD1 (ENSMGAG00000001842) #21	TNNT2 (ENSMGAG00000001868) #22	PKP1 (ENSMGAG00000002027) #23	ENSMGAG00000002044 #24	ENSMGAG00000001642	ENSMGAG00000018354	ENSMGAG00000001598	ENSMGAG00000001543 #15	ENSMGAG00000001493	ENSMGAG00000001520 #9	ENSMGAG00000001445 #13	ENSMGAG00000001393	ENSMGAG00000001380	ENSMGAG00000017772	ENSMGAG00000001374	ENSMGAG00000022615	ENSMGAG00000001270
Chicken	MODERN SPECIES	18	NELFE (ENSGALG00010025929)	SKIC2 (ENSGALG00010025933)	KLHL12 (ENSGALG00010025970)	RABIF (ENSGALG00010026013)	TUBA5 (ENSGALG00010026036)	KDM5B (ENSGALG00010027872)	IPO9 (ENSGALG00010026102) #13	LZTR1 (ENSGALG00010026117)	RNPEP (ENSGALG00010026143) #9	NAV1 (ENSGALG00010026262) #15	SYT2 (ENSGALG00010026315)	PPP1R12B (ENSGALG00010026355)	CSRP1 (ENSGALG00010026508) #17	TNNI1 (ENSGALG00010026560) #20	LAD1 (ENSGALG00010026638) #21	TNNT2 (ENSGALG00010026743) #22	PKP1 (ENSGALG00010024891) #23	ENSGALG00010025003 #24	TMEM9 (ENSGALG00010025044) #25	MGAT4C (ENSGALG00010025115)	TMEM183A (ENSGALG00010025154)	PPFIA4 (ENSGALG00010025188)	MYOG (ENSGALG00010025215)	ADORA1 (ENSGALG00010024589)	MYBPHL (ENSGALG00010024595)	DENND2D (ENSGALG00010024608)	CEPT1 (ENSGALG00010024627)	DRAM2 (ENSGALG00010024692)	LRIF1 (ENSGALG00010024712)	ENSGALG00010024760	UBE2T (ENSGALG00010024783)
Japanese quail	MODERN SPECIES	18	LGR6 (ENSCJPG00005006846)	ENSCJPG00005006848	SKIC2 (ENSCJPG00005006849)	KLHL12 (ENSCJPG00005006915)	RABIF (ENSCJPG00005006917)	ENSCJPG00005006918	KDM5B (ENSCJPG00005006922)	LZTR1 (ENSCJPG00005007247)	RNPEP (ENSCJPG00005007249) #9	NAV1 (ENSCJPG00005007385) #15	SYT2 (ENSCJPG00005007448)	PPP1R12B (ENSCJPG00005007786)	CSRP1 (ENSCJPG00005007905) #17	PHLDA3 (ENSCJPG00005007906) #18	TNNI1 (ENSCJPG00005007907) #20	TNNT2 (ENSCJPG00005007908) #22	PKP1 (ENSCJPG00005007911) #23	ENSCJPG00005007994 #24	TMEM9 (ENSCJPG00005007995) #25	ENSCJPG00005007996	TMEM183A (ENSCJPG00005007997)	PPFIA4 (ENSCJPG00005008004)	MYOG (ENSCJPG00005009052)	ADORA1 (ENSCJPG00005009054)	MYBPH (ENSCJPG00005009055)	DENND2D (ENSCJPG00005009056)	CEPT1 (ENSCJPG00005009057)	DRAM2 (ENSCJPG00005009058)	LRIF1 (ENSCJPG00005009059)	ENSCJPG00005009060	UBE2T (ENSCJPG00005009061)
Neognathae_b	ANCESTRAL SPECIES	24	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000157076	ENSGT00390000008224 #13	ENSGT00940000158190	ENSGT00940000160431 #9	ENSGT00940000156637 #15	ENSGT00940000157586	ENSGT00940000166065	ENSGT00940000157067	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163962	ENSGT00390000009310	ENSGT01050000244900.a.a.a.a.a	ENSGT00950000182959.a.b.b.b	ENSGT01030000234555.a.a.b.a.a	ENSGT00940000158040	ENSGT00950000182931.A	ENSGT00950000183117.a.b	ENSGT01030000234578.B.b	ENSGT00390000017353	ENSGT00940000165883	ENSGT00940000157365
Passeriformes	ANCESTRAL SPECIES	21	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000157076	ENSGT00390000008224 #13	ENSGT00940000158190	ENSGT00940000160431 #9	ENSGT00940000156637 #15	ENSGT00940000157586	ENSGT00940000166065	ENSGT00940000157067	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163962	ENSGT00390000009310	ENSGT01050000244900.a.a.a.a.a	ENSGT00950000182959.a.b.b.b	ENSGT01030000234555.a.a.b.a.a	ENSGT00940000158040	ENSGT00950000182931.A	ENSGT00950000183117.a.b	ENSGT01030000234578.B.b	ENSGT00390000017353	ENSGT00940000165883	ENSGT00940000157365
Great tit	MODERN SPECIES	19	KLHL12 (ENSPMJG00000007617)	RABIF (ENSPMJG00000007616)	ENSPMJG00000007615	KDM5B (ENSPMJG00000007609)	IPO9 (ENSPMJG00000006711) #13	LZTR1 (ENSPMJG00000006696)	RNPEP (ENSPMJG00000006695) #9	NAV1 (ENSPMJG00000004802) #15	SYT2 (ENSPMJG00000004789)	ENSPMJG00000004784	ENSPMJG00000004750	CSRP1 (ENSPMJG00000004741) #17	PHLDA3 (ENSPMJG00000004739) #18	TNNI1 (ENSPMJG00000004728) #20	ENSPMJG00000004724	TNNT2 (ENSPMJG00000004718) #22	PKP1 (ENSPMJG00000004713) #23	ENSPMJG00000004704	TMEM9 (ENSPMJG00000004702) #25	ENSPMJG00000004699	TMEM183A (ENSPMJG00000004698)	PPFIA4 (ENSPMJG00000004678)	MYOG (ENSPMJG00000004674)	ADORA1 (ENSPMJG00000004672)	MYBPH (ENSPMJG00000004664)	DENND2D (ENSPMJG00000004659)	CEPT1 (ENSPMJG00000004653)	DRAM2 (ENSPMJG00000004636)	LRIF1 (ENSPMJG00000004634)	ENSPMJG00000004623	UBE2T (ENSPMJG00000004613)
Passeriformes_d	ANCESTRAL SPECIES	21	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000157076	ENSGT00390000008224 #13	ENSGT00940000158190	ENSGT00940000160431 #9	ENSGT00940000156637 #15	ENSGT00940000157586	ENSGT00940000166065	ENSGT00940000157067	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00390000000819.b #25	ENSGT00940000163962	ENSGT00390000009310	ENSGT01050000244900.a.a.a.a.a	ENSGT00950000182959.a.b.b.b	ENSGT01030000234555.a.a.b.a.a	ENSGT00940000158040	ENSGT00950000182931.A	ENSGT00950000183117.a.b	ENSGT01030000234578.B.b	ENSGT00390000017353	ENSGT00940000165883	ENSGT00940000157365
Passeriformes_g	ANCESTRAL SPECIES	24	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000157076	ENSGT00390000008224 #13	ENSGT00940000158190	ENSGT00940000160431 #9	ENSGT00940000156637 #15	ENSGT00940000157586	ENSGT00940000166065	ENSGT00940000157067	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000169516	ENSGT00390000000819.b #25	ENSGT00940000163962	ENSGT00390000009310	ENSGT01050000244900.a.a.a.a.a	ENSGT00950000182959.a.b.b.b	ENSGT01030000234555.a.a.b.a.a	ENSGT00940000158040	ENSGT00950000182931.A	ENSGT00950000183117.a.b	ENSGT01030000234578.B.b	ENSGT00390000017353	ENSGT00940000165883	ENSGT00940000157365
Passeroidea	ANCESTRAL SPECIES	24	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000157076	ENSGT00390000008224 #13	ENSGT00940000158190	ENSGT00940000160431 #9	ENSGT00940000156637 #15	ENSGT00940000157586	ENSGT00940000166065	ENSGT00940000157067	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000169516	ENSGT00390000000819.b #25	ENSGT00940000163962	ENSGT00390000009310	ENSGT01050000244900.a.a.a.a.a	ENSGT00950000182959.a.b.b.b	ENSGT01030000234555.a.a.b.a.a	ENSGT00940000158040	ENSGT00950000182931.A	ENSGT00950000183117.a.b	ENSGT01030000234578.B.b	ENSGT00390000017353	ENSGT00940000165883	ENSGT00940000157365
Zebra finch	MODERN SPECIES	19	KLHL12 (ENSTGUG00000001234)	RABIF (ENSTGUG00000024844)	ENSTGUG00000001252	KDM5B (ENSTGUG00000001257)	IPO9 (ENSTGUG00000001278) #13	LZTR1 (ENSTGUG00000001281)	RNPEP (ENSTGUG00000001290) #9	NAV1 (ENSTGUG00000001299) #15	SYT2 (ENSTGUG00000001304)	ENSTGUG00000028728	PPP1R12B (ENSTGUG00000001309)	CSRP1 (ENSTGUG00000024671) #17	PHLDA3 (ENSTGUG00000001317) #18	TNNI1 (ENSTGUG00000001319) #20	ENSTGUG00000001329 #21	TNNT2 (ENSTGUG00000001330) #22	PKP1 (ENSTGUG00000001339) #23	ENSTGUG00000001343	TMEM9 (ENSTGUG00000024782) #25	ENSTGUG00000023392	ENSTGUG00000001350	TMEM183A (ENSTGUG00000001354)	PPFIA4 (ENSTGUG00000001363)	MYOG (ENSTGUG00000001380)	ADORA1 (ENSTGUG00000001381)	MYBPH (ENSTGUG00000001383)	DENND2D (ENSTGUG00000001388)	DRAM2 (ENSTGUG00000001400)	LRIF1 (ENSTGUG00000001402)	ENSTGUG00000001403	UBE2T (ENSTGUG00000001411)
Common canary	MODERN SPECIES	46	ENSSCAG00000006364	KDM5B (ENSSCAG00000006368)	IPO9 (ENSSCAG00000006416) #13	LZTR1 (ENSSCAG00000006664)	RNPEP (ENSSCAG00000006683) #9	NAV1 (ENSSCAG00000006798) #15	SYT2 (ENSSCAG00000006987)	ENSSCAG00000006990	ENSSCAG00000006994	ENSSCAG00000006997	CSRP1 (ENSSCAG00000007004) #17	PHLDA3 (ENSSCAG00000007008) #18	TNNI1 (ENSSCAG00000007010) #20	ENSSCAG00000007013	ENSSCAG00000007018	TNNT2 (ENSSCAG00000007026) #22	PKP1 (ENSSCAG00000007030) #23	ENSSCAG00000007038	ENSSCAG00000007046	TMEM9 (ENSSCAG00000007050) #25	ENSSCAG00000007055	TMEM183A (ENSSCAG00000007059)	PPFIA4 (ENSSCAG00000007064)	MYOG (ENSSCAG00000007079)	ADORA1 (ENSSCAG00000007082)	MYBPH (ENSSCAG00000007084)	DENND2D (ENSSCAG00000007088)	CEPT1 (ENSSCAG00000007093)	DRAM2 (ENSSCAG00000007097)	LRIF1 (ENSSCAG00000007100)	ENSSCAG00000007102
Medium ground finch	MODERN SPECIES	128	ENSGFOG00000007520	LGR6 (ENSGFOG00000007378)	KLHL12 (ENSGFOG00000007359)	ENSGFOG00000007347	KDM5B (ENSGFOG00000005418)	IPO9 (ENSGFOG00000005155) #13	LZTR1 (ENSGFOG00000003792)	RNPEP (ENSGFOG00000003613) #9	NAV1 (ENSGFOG00000003479) #15	SYT2 (ENSGFOG00000003458)	ENSGFOG00000003446	ENSGFOG00000003382	CSRP1 (ENSGFOG00000003369) #17	PHLDA3 (ENSGFOG00000003358) #18	TNNI1 (ENSGFOG00000003337) #20	TNNT2 (ENSGFOG00000003306) #22	PKP1 (ENSGFOG00000002225) #23	ENSGFOG00000002170	TMEM9 (ENSGFOG00000002156) #25	ENSGFOG00000002149	TMEM183A (ENSGFOG00000002132)	ENSGFOG00000002124	PPFIA4 (ENSGFOG00000002061)	MYOG (ENSGFOG00000002039)	ADORA1 (ENSGFOG00000002030)	MYBPH (ENSGFOG00000002017)	DENND2D (ENSGFOG00000002007)	CEPT1 (ENSGFOG00000001999)	DRAM2 (ENSGFOG00000013088)	LRIF1 (ENSGFOG00000013086)	ENSGFOG00000013076
Neognathae_c	ANCESTRAL SPECIES	27	ENSGT00940000159939	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000157076	ENSGT00390000008224 #13	ENSGT00940000158190	ENSGT00940000160431 #9	ENSGT00940000156637 #15	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000156777 #17	ENSGT00440000039564.a.a #18	ENSGT01030000234588.b.a #20	ENSGT00390000005256 #21	ENSGT00940000154709.a.a #22	ENSGT00940000156735 #23	ENSGT00940000162073 #24	ENSGT00940000169516	ENSGT00390000000819.b #25	ENSGT00940000163962	ENSGT00390000009310	ENSGT01050000244900.a.a.a.a.a	ENSGT00950000182959.a.b.b.b	ENSGT01030000234555.a.a.b.a.a	ENSGT00940000158040	ENSGT00950000182931.A	ENSGT00950000183117.a.b	ENSGT01030000234578.B.b	ENSGT00390000017353	ENSGT00940000165883
Golden eagle	MODERN SPECIES	16	LGR6 (ENSACCG00020010867)	KLHL12 (ENSACCG00020010849)	RABIF (ENSACCG00020010837)	ENSACCG00020010825	KDM5B (ENSACCG00020010792)	IPO9 (ENSACCG00020010719) #13	LZTR1 (ENSACCG00020010619)	RNPEP (ENSACCG00020010556) #9	NAV1 (ENSACCG00020010203) #15	SYT2 (ENSACCG00020009791)	PPP1R12B (ENSACCG00020009734)	CSRP1 (ENSACCG00020009670) #17	PHLDA3 (ENSACCG00020009657) #18	TNNI1 (ENSACCG00020009637) #20	LAD1 (ENSACCG00020009588) #21	TNNT2 (ENSACCG00020009571) #22	PKP1 (ENSACCG00020009533) #23	ENSACCG00020009492 #24	ENSACCG00020009467	TMEM9 (ENSACCG00020009454) #25	TMEM183A (ENSACCG00020009442)	PPFIA4 (ENSACCG00020009414)	MYOG (ENSACCG00020009387)	ADORA1 (ENSACCG00020009375)	MYBPH (ENSACCG00020009357)	DENND2D (ENSACCG00020009339)	CEPT1 (ENSACCG00020009330)	DRAM2 (ENSACCG00020009306)	LRIF1 (ENSACCG00020009289)	ENSACCG00020009265	UBE2T (ENSACCG00020009244)
Kakapo	MODERN SPECIES	30	LGR6 (ENSSHBG00005017078)	KLHL12 (ENSSHBG00005017103)	RABIF (ENSSHBG00005017110)	ENSSHBG00005017114	KDM5B (ENSSHBG00005017122)	IPO9 (ENSSHBG00005017140) #13	LZTR1 (ENSSHBG00005017178)	RNPEP (ENSSHBG00005017185) #9	NAV1 (ENSSHBG00005017194) #15	SYT2 (ENSSHBG00005017201)	ENSSHBG00005017207	CSRP1 (ENSSHBG00005017211) #17	PHLDA3 (ENSSHBG00005017215) #18	TNNI1 (ENSSHBG00005017219) #20	LAD1 (ENSSHBG00005017228) #21	TNNT2 (ENSSHBG00005017231) #22	PKP1 (ENSSHBG00005017238) #23	ENSSHBG00005000789	TMEM9 (ENSSHBG00005000793) #25	ENSSHBG00005005726	TMEM183A (ENSSHBG00005005752)	PPFIA4 (ENSSHBG00005005805)	MYOG (ENSSHBG00005005843)	ADORA1 (ENSSHBG00005005858)	MYBPH (ENSSHBG00005005881)	DENND2D (ENSSHBG00005005926)	CEPT1 (ENSSHBG00005005944)	DRAM2 (ENSSHBG00005006023)	LRIF1 (ENSSHBG00005006034)	ENSSHBG00005006065	UBE2T (ENSSHBG00005006103)
African ostrich	MODERN SPECIES	337	LGR6 (ENSSCUG00000003240)	KLHL12 (ENSSCUG00000003238)	ENSSCUG00000003235	KDM5B (ENSSCUG00000003234)	IPO9 (ENSSCUG00000003226) #13	LZTR1 (ENSSCUG00000003154)	RNPEP (ENSSCUG00000003089) #9	NAV1 (ENSSCUG00000003069) #15	SYT2 (ENSSCUG00000003054)	ENSSCUG00000003053	ENSSCUG00000003051	CSRP1 (ENSSCUG00000003050) #17	PHLDA3 (ENSSCUG00000003049) #18	TNNI1 (ENSSCUG00000003046) #20	LAD1 (ENSSCUG00000003039) #21	TNNT2 (ENSSCUG00000003033) #22	PKP1 (ENSSCUG00000003030) #23	ENSSCUG00000003029	ENSSCUG00000003028	TMEM9 (ENSSCUG00000003027) #25	ENSSCUG00000003025	TMEM183A (ENSSCUG00000003024)	PPFIA4 (ENSSCUG00000003020)	MYOG (ENSSCUG00000003012)	ADORA1 (ENSSCUG00000003010)	MYBPH (ENSSCUG00000003007)	ENSSCUG00000003004	DENND2D (ENSSCUG00000003002)	CEPT1 (ENSSCUG00000003000)	DRAM2 (ENSSCUG00000002996)	LRIF1 (ENSSCUG00000002995)
Actinopterygii	ANCESTRAL SPECIES	44								ENSGT00940000161832.b	ENSGT00390000017324	ENSGT00940000156419	ENSGT00940000165530	ENSGT00940000155455	ENSGT00940000165780	ENSGT00530000063817.b	ENSGT00940000164185	ENSGT00940000154709.a.a #22	ENSGT00390000013899.a.a	ENSGT00940000165765	ENSGT00390000014700.a	ENSGT01050000244879.b.a.b.a	ENSGT00950000183132.A	ENSGT00530000063825.A.c	ENSGT00940000153962.b	ENSGT00390000005178.a	ENSGT01050000244951.a.b.a.b	ENSGT00940000158899	ENSGT00940000166645	ENSGT00940000158677	ENSGT00940000160423	ENSGT00940000153544.b	ENSGT00390000014557
Neopterygii	ANCESTRAL SPECIES	58									ENSGT00390000017324	ENSGT00940000156419	ENSGT00940000165530	ENSGT00940000155455	ENSGT00940000165780	ENSGT00530000063817.b	ENSGT00940000164185	ENSGT00940000154709.a.a #22	ENSGT00390000013899.a.a	ENSGT00940000165765	ENSGT00390000014700.a	ENSGT01050000244879.b.a.b.a	ENSGT00950000183132.A	ENSGT00530000063825.A.c.f	ENSGT00530000063825.A.c.e	ENSGT00940000153962.b	ENSGT00390000005178.a	ENSGT01050000244951.a.b.a.b	ENSGT00940000158899	ENSGT00940000166645	ENSGT00940000158677	ENSGT00940000160423	ENSGT00940000153544.b
Osteoglossocephalai	ANCESTRAL SPECIES	226										ENSGT00940000156419	ENSGT00940000165530	ENSGT00940000155455	ENSGT00940000165780	ENSGT00530000063817.b	ENSGT00940000164185	ENSGT00940000154709.a.a #22	ENSGT00390000013899.a.a	ENSGT00940000165765	ENSGT00390000014700.a	ENSGT01050000244879.b.a.b.a	ENSGT00950000183132.A	ENSGT00530000063825.A.c.f	ENSGT00530000063825.A.c.e	ENSGT00940000153962.b	ENSGT01050000244951.a.b.a.b	ENSGT00940000158899	ENSGT00940000158677	ENSGT00940000160423	ENSGT00940000153544.b	ENSGT00390000014557	ENSGT00390000008702
Osteoglossiformes	ANCESTRAL SPECIES	419													ENSGT00940000155455	ENSGT00940000165780	ENSGT00940000164185	ENSGT00940000154709.a.a #22	ENSGT00390000013899.a.a	ENSGT00940000165765	ENSGT00390000014700.a	ENSGT01050000244879.b.a.b.a	ENSGT00530000063825.A.c.f	ENSGT00940000153962.b
Asian bonytongue	MODERN SPECIES	20	ENSSFOG00015002124	cmasa (ENSSFOG00015002083)	kcnj8 (ENSSFOG00015002076)	TUBGCP6 (ENSSFOG00015002033)	drc1 (ENSSFOG00015032400)	ENSSFOG00015029875	si:ch211-214j24.10 (ENSSFOG00015001996)	mlc1 (ENSSFOG00015001979)	ENSSFOG00015030362	apex1 (ENSSFOG00015001948)	btbd11a (ENSSFOG00015001877)	cry1b (ENSSFOG00015001818)	zgc:153031 (ENSSFOG00015001770)	ENSSFOG00015001755	si:ch73-62b13.1 (ENSSFOG00015001750)	tnnt2c (ENSSFOG00015001731) #22	tmem263 (ENSSFOG00015029590)	ENSSFOG00015001714	ric8b (ENSSFOG00015001706)	rfx4 (ENSSFOG00015001604)	endouc (ENSSFOG00015001560)	cyb5r3 (ENSSFOG00015001511)	ENSSFOG00015001497	aldob (ENSSFOG00015001456)	ENSSFOG00015001323	ENSSFOG00015001306	prpf19 (ENSSFOG00015001236)	tcirg1b (ENSSFOG00015001219)	mrpl18 (ENSSFOG00015001208)	ENSSFOG00015028795	ANKRD13D (ENSSFOG00015001113)
P. kingsleyae	MODERN SPECIES	67												cry1b (ENSPKIG00000024586)	zgc:153031 (ENSPKIG00000024624)	si:ch73-62b13.1 (ENSPKIG00000024642)	ENSPKIG00000024647	tnnt2c (ENSPKIG00000024654) #22	tmem263 (ENSPKIG00000024668)	ENSPKIG00000024674	ric8b (ENSPKIG00000024699)	rfx4 (ENSPKIG00000024742)	endouc (ENSPKIG00000024767)	cyb5r3 (ENSPKIG00000024781)	ppfibp1b (ENSPKIG00000024823)	ENSPKIG00000024889	ENSPKIG00000024891	ENSPKIG00000024896	ENSPKIG00000024904	si:ch211-245j22.3 (ENSPKIG00000024907)	ITIH5 (ENSPKIG00000024913)	itih2 (ENSPKIG00000024927)	kin (ENSPKIG00000024945)
Clupeocephala	ANCESTRAL SPECIES	620														ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00940000154709.a.a #22
Euteleosteomorpha	ANCESTRAL SPECIES	30														ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00940000154709.a.a #22	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a	ENSGT00950000182959.a.a	ENSGT00940000153222.a.a	ENSGT00940000157479	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a
Acanthomorphata	ANCESTRAL SPECIES	47	ENSGT00390000005378	ENSGT00940000166611	ENSGT00950000182885.B	ENSGT00950000182885.C.b	ENSGT00390000010777	ENSGT00390000006088	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00940000163513	ENSGT00950000183052.b.c.b.a	ENSGT00940000158003	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a #22	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a	ENSGT00950000182959.a.a	ENSGT00940000153222.a.a	ENSGT00940000157479	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347
Euacanthomorphacea	ANCESTRAL SPECIES	18	ENSGT00940000160124	ENSGT00950000182999.b.a.a	ENSGT00390000005378	ENSGT00940000166611	ENSGT00950000182885.B	ENSGT00950000182885.C.b	ENSGT00390000010777	ENSGT00390000006088	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT01030000234576.D.a.a.b.a.a.a.a.a.b.a.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a #22	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a	ENSGT00950000182959.a.a	ENSGT00940000153222.a.a	ENSGT00940000157479	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347
Percomorphaceae	ANCESTRAL SPECIES	19	ENSGT00950000182999.b.a.a	ENSGT00390000005378	ENSGT00940000175478	ENSGT00940000166611	ENSGT00950000182885.B	ENSGT00950000182885.C.b	ENSGT00390000010777	ENSGT00390000006088	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a #22	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a	ENSGT00950000182959.a.a	ENSGT00940000153222.a.a	ENSGT00940000157479	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347
Percomorphaceae_B	ANCESTRAL SPECIES	21	ENSGT00940000160124	ENSGT00950000182999.b.a.a	ENSGT00390000005378	ENSGT00940000166611	ENSGT00950000182885.B	ENSGT00950000182885.C.b	ENSGT00390000010777	ENSGT00390000006088	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a #22	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a	ENSGT00950000182959.a.a	ENSGT00940000153222.a.a	ENSGT00940000157479	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347
Ovalentaria	ANCESTRAL SPECIES	22	ENSGT00940000160124	ENSGT00950000182999.b.a.a	ENSGT00390000005378	ENSGT00940000166611	ENSGT00950000182885.B	ENSGT00950000182885.C.b	ENSGT00390000010777	ENSGT00390000006088	ENSGT00940000168896	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a #22	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a	ENSGT00950000182959.a.a	ENSGT00940000153222.a.a	ENSGT00940000157479	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347
Ovalentaria_B	ANCESTRAL SPECIES	23	ENSGT00950000182999.b.a.a	ENSGT00390000005378	ENSGT00940000166611	ENSGT00950000182885.B	ENSGT00950000182885.C.b	ENSGT00390000010777	ENSGT00390000006088	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a #22	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a	ENSGT00950000182959.a.a	ENSGT00940000153222.a.a	ENSGT00940000157479	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347
Cichlidae	ANCESTRAL SPECIES	24	ENSGT00940000160124	ENSGT00950000182999.b.a.a	ENSGT00390000005378	ENSGT00940000166611	ENSGT00950000182885.B	ENSGT00950000182885.C.b	ENSGT00390000010777	ENSGT00390000006088	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00940000172707.b	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a #22	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a	ENSGT00950000182959.a.a	ENSGT00940000153222.a.a	ENSGT00940000157479	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000166093.i	ENSGT00940000158804	ENSGT00730000112347
Pseudocrenilabrinae	ANCESTRAL SPECIES	21	ENSGT00940000160124	ENSGT00950000182999.b.a.a	ENSGT00390000005378	ENSGT00940000166611	ENSGT00950000182885.B	ENSGT00950000182885.C.b	ENSGT00390000010777	ENSGT00390000006088	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00940000172707.b	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a #22	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a	ENSGT00950000182959.a.a	ENSGT00940000153222.a.a	ENSGT00940000157479	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000166093.i	ENSGT00940000158804.m	ENSGT00730000112347
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	10	ENSGT00940000160124	ENSGT00950000182999.b.a.a	ENSGT00390000005378	ENSGT00940000166611	ENSGT00950000182885.B	ENSGT00950000182885.C.b	ENSGT00390000010777	ENSGT00390000006088	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00940000172707.b	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a #22	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a	ENSGT00950000182959.a.a	ENSGT00940000153222.a.a	ENSGT00940000157479	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000166093.i	ENSGT00940000158804.n	ENSGT00940000158804.m
Haplochromini	ANCESTRAL SPECIES	9	ENSGT00940000154983.c.b	ENSGT00940000160124	ENSGT00950000182999.b.a.a	ENSGT00390000005378	ENSGT00940000166611	ENSGT00950000182885.B	ENSGT00950000182885.C.b	ENSGT00390000010777	ENSGT00390000006088	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a #22	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a	ENSGT00950000182959.a.a	ENSGT00940000153222.a.a	ENSGT00940000157479	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000166093.i	ENSGT00940000158804.n.b	ENSGT00940000158804.m
Burton s mouthbrooder	MODERN SPECIES	437	elapor2b (ENSHBUG00000008321)	klhl42 (ENSHBUG00000008341)	nrip2 (ENSHBUG00000008345)	itfg2 (ENSHBUG00000008439)	ascl1a (ENSHBUG00000008452)	pah (ENSHBUG00000008494)	th2 (ENSHBUG00000008510)	nup37 (ENSHBUG00000008577)	parpbp (ENSHBUG00000008599)	ENSHBUG00000008609	igf1 (ENSHBUG00000008635)	ENSHBUG00000008652	btbd11a (ENSHBUG00000008732)	cry1a (ENSHBUG00000008802)	MTERF2 (ENSHBUG00000008815)	tnnt2c (ENSHBUG00000008824) #22	syt10 (ENSHBUG00000008857)
Lyretail cichlid	MODERN SPECIES	291	nrip2 (ENSNBRG00000011429)	itfg2 (ENSNBRG00000011398)	ascl1a (ENSNBRG00000011381)	pah (ENSNBRG00000011340)	th2 (ENSNBRG00000011203)	nup37 (ENSNBRG00000011131)	parpbp (ENSNBRG00000011099)	ENSNBRG00000011057	igf1 (ENSNBRG00000011029)	ENSNBRG00000011014	ENSNBRG00000010987	btbd11a (ENSNBRG00000010944)	ENSNBRG00000010937	MTERF2 (ENSNBRG00000010933)	cry1a (ENSNBRG00000010898)	tnnt2c (ENSNBRG00000010879) #22	syt10 (ENSNBRG00000010856)	ENSNBRG00000010848	ENSNBRG00000010794	cyb5r3 (ENSNBRG00000010756)	syt1a (ENSNBRG00000010739)	pawr (ENSNBRG00000010725)	ppp1r12a (ENSNBRG00000010670)	ENSNBRG00000010659	rps16 (ENSNBRG00000010637)	myf6 (ENSNBRG00000010629)	myf5 (ENSNBRG00000010621)	lin7a (ENSNBRG00000010602)	ENSNBRG00000010588	ACSS3 (ENSNBRG00000010540)	ppfia2 (ENSNBRG00000010460)
Nile tilapia	MODERN SPECIES	8	nrip2 (ENSONIG00000030365)	itfg2 (ENSONIG00000017820)	ascl1a (ENSONIG00000021219)	ENSONIG00000038297	pah (ENSONIG00000017811)	th2 (ENSONIG00000017806)	nup37 (ENSONIG00000041645)	ENSONIG00000042831	parpbp (ENSONIG00000017803)	ENSONIG00000029183	igf1 (ENSONIG00000017800)	ENSONIG00000017799	btbd11a (ENSONIG00000017796)	cry1a (ENSONIG00000000075)	MTERF2 (ENSONIG00000020695)	tnnt2c (ENSONIG00000020696) #22	ENSONIG00000000001	syt10 (ENSONIG00000000002)	syt1a (ENSONIG00000000003)	pawr (ENSONIG00000028232)	ppp1r12a (ENSONIG00000000005)	foxm1 (ENSONIG00000027574)	foxm1 (ENSONIG00000000082)	ENSONIG00000031149	rps16 (ENSONIG00000000006)	myf6 (ENSONIG00000000007)	myf5 (ENSONIG00000038625)	lin7a (ENSONIG00000000078)	ACSS3 (ENSONIG00000000079)	ppfia2 (ENSONIG00000000080)	ENSONIG00000000081
Midas cichlid	MODERN SPECIES	737	klhl42 (ENSACIG00000013451)	nrip2 (ENSACIG00000013461)	itfg2 (ENSACIG00000013478)	ascl1a (ENSACIG00000013500)	pah (ENSACIG00000013511)	th2 (ENSACIG00000013549)	nup37 (ENSACIG00000013665)	parpbp (ENSACIG00000013691)	ENSACIG00000013710	igf1 (ENSACIG00000013728)	ENSACIG00000013740	ENSACIG00000013750	btbd11a (ENSACIG00000013768)	cry1a (ENSACIG00000013832)	MTERF2 (ENSACIG00000014189)	tnnt2c (ENSACIG00000014196) #22	syt10 (ENSACIG00000014226)	ENSACIG00000014242	ENSACIG00000014253	cyb5r3 (ENSACIG00000014298)	syt1a (ENSACIG00000014311)
Pomacentridae	ANCESTRAL SPECIES	59	ENSGT00940000154983.c.b	ENSGT00940000160124	ENSGT00950000182999.b.a.a	ENSGT00390000005378	ENSGT00940000166611	ENSGT00950000182885.B	ENSGT00950000182885.C.b	ENSGT00390000010777	ENSGT00390000006088	ENSGT00940000168896	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00530000063817.b.b	ENSGT00940000155455.g	ENSGT00940000156419.b	ENSGT00940000154709.a.a #22	ENSGT00940000158899.bb.b	ENSGT00940000158899.cb	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a	ENSGT00950000182959.a.a	ENSGT00940000153222.a.a	ENSGT00940000157479	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000166093	ENSGT00940000158804
Pomacentridae_A	ANCESTRAL SPECIES	58	ENSGT00940000154983.c.b	ENSGT00940000160124	ENSGT00950000182999.b.a.a	ENSGT00390000005378	ENSGT00940000166611	ENSGT00950000182885.B	ENSGT00950000182885.C.b	ENSGT00390000010777	ENSGT00390000006088	ENSGT00940000168896	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00530000063817.b.b	ENSGT00940000155455.g	ENSGT00940000156419.b	ENSGT00940000154709.a.a #22	ENSGT00940000158899.cb	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a	ENSGT00950000182959.a.a	ENSGT00940000153222.a.a	ENSGT00940000157479	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347
Amphiprion	ANCESTRAL SPECIES	19	ENSGT00940000154983.c.b	ENSGT00940000160124	ENSGT00950000182999.b.a.a	ENSGT00390000005378	ENSGT00940000166611	ENSGT00950000182885.B	ENSGT00950000182885.C.b	ENSGT00390000010777	ENSGT00390000006088	ENSGT00940000168896	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00530000063817.b.b	ENSGT00940000155455.g	ENSGT00940000156419.b	ENSGT00940000154709.a.a #22	ENSGT00940000158899.cb	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a	ENSGT00950000182959.a.a	ENSGT00940000153222.a.a	ENSGT00940000157479	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347
Clown anemonefish	MODERN SPECIES	2919																tnnt2c (ENSAOCG00000008809) #22
Orange clownfish	MODERN SPECIES	13	klhl42 (ENSAPEG00000021941)	ENSAPEG00000021936	nrip2 (ENSAPEG00000021926)	itfg2 (ENSAPEG00000021902)	ascl1a (ENSAPEG00000021889)	pah (ENSAPEG00000021861)	th2 (ENSAPEG00000021831)	nup37 (ENSAPEG00000021794)	parpbp (ENSAPEG00000021705)	ENSAPEG00000021659	igf1 (ENSAPEG00000021610)	ENSAPEG00000021575	ENSAPEG00000021556	cry1a (ENSAPEG00000021519)	btbd11a (ENSAPEG00000021482)	tnnt2c (ENSAPEG00000021437) #22	syt10 (ENSAPEG00000021420)	ENSAPEG00000021411	cyb5r3 (ENSAPEG00000021367)	syt1a (ENSAPEG00000021322)	pawr (ENSAPEG00000021309)	ppp1r12a (ENSAPEG00000021244)	rps16 (ENSAPEG00000021214)	myf6 (ENSAPEG00000021158)	myf5 (ENSAPEG00000021137)	lin7a (ENSAPEG00000021115)	ACSS3 (ENSAPEG00000021054)	ppfia2 (ENSAPEG00000020985)	ENSAPEG00000020865	foxm1 (ENSAPEG00000020793)	rhno1 (ENSAPEG00000020771)
Spiny chromis	MODERN SPECIES	1620															ENSAPOG00000019701	tnnt2c (ENSAPOG00000019758) #22	syt10 (ENSAPOG00000019813)	ENSAPOG00000019829
Bicolor damselfish	MODERN SPECIES	791															btbd11a (ENSSPAG00000023015)	tnnt2c (ENSSPAG00000023033) #22	syt10 (ENSSPAG00000023054)	syt10 (ENSSPAG00000023061)	ENSSPAG00000023074	cyb5r3 (ENSSPAG00000023109)
Atherinomorphae	ANCESTRAL SPECIES	21	ENSGT00940000154983.c.b	ENSGT00940000160124	ENSGT00950000182999.b.a.a	ENSGT00390000005378	ENSGT00940000166611	ENSGT00950000182885.B	ENSGT00950000182885.C.b	ENSGT00390000010777	ENSGT00390000006088	ENSGT00940000168896	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a #22	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a	ENSGT00950000182959.a.a	ENSGT00940000153222.a.a	ENSGT00940000157479	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347
Cyprinodontiformes	ANCESTRAL SPECIES	19	ENSGT00940000154983.c.b	ENSGT00940000160124	ENSGT00950000182999.b.a.a	ENSGT00390000005378	ENSGT00940000166611	ENSGT00950000182885.B	ENSGT00950000182885.C.b	ENSGT00390000010777	ENSGT00390000006088	ENSGT00940000168896	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a #22	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a	ENSGT00950000182959.a.a	ENSGT00940000153222.a.a	ENSGT00940000157479	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347
Aplocheiloidei	ANCESTRAL SPECIES	14	ENSGT00940000158225.i.a	ENSGT00940000154983.c.b	ENSGT00940000160124	ENSGT00950000182999.b.a.a	ENSGT00390000005378	ENSGT00940000166611	ENSGT00950000182885.B	ENSGT00950000182885.C.b	ENSGT00390000010777	ENSGT00390000006088	ENSGT00940000168896	ENSGT00940000159081	ENSGT01030000234576.D.a.a.b.a.a.a.a.a.b.a.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00940000154709.a.a #22	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a	ENSGT00950000182959.a.a	ENSGT00940000153222.a.a	ENSGT00940000157479	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347
Mangrove rivulus	MODERN SPECIES	19	ENSKMAG00000013331	klhl42 (ENSKMAG00000013321)	nrip2 (ENSKMAG00000013305)	itfg2 (ENSKMAG00000013255)	ascl1a (ENSKMAG00000013228)	pah (ENSKMAG00000013176)	th2 (ENSKMAG00000013134)	nup37 (ENSKMAG00000013089)	parpbp (ENSKMAG00000013026)	ENSKMAG00000012992	igf1 (ENSKMAG00000012960)	ENSKMAG00000012934	ENSKMAG00000012909	btbd11a (ENSKMAG00000012822)	cry1a (ENSKMAG00000012604)	tnnt2c (ENSKMAG00000012574) #22	syt10 (ENSKMAG00000012546)	ENSKMAG00000012499	cyb5r3 (ENSKMAG00000012463)	syt1a (ENSKMAG00000012419)	ENSKMAG00000012380	pawr (ENSKMAG00000012360)	ppp1r12a (ENSKMAG00000012279)	rps16 (ENSKMAG00000012230)	myf6 (ENSKMAG00000012210)	myf5 (ENSKMAG00000012199)	lin7a (ENSKMAG00000012178)	ACSS3 (ENSKMAG00000012129)	ppfia2 (ENSKMAG00000011901)	ENSKMAG00000011752	foxm1 (ENSKMAG00000011726)
Turquoise killifish	MODERN SPECIES	1610	ENSNFUG00015023818	TRHDE (ENSNFUG00015023753)	ENSNFUG00015023748	itfg2 (ENSNFUG00015023745)	CR847950.4 (ENSNFUG00015023740)	ASCL1A (ENSNFUG00015023739)	pah (ENSNFUG00015023683)	th2 (ENSNFUG00015022835)	nup37 (ENSNFUG00015022768)	PARPBP (ENSNFUG00015022762)	ENSNFUG00015022756	IGF1 (ENSNFUG00015022671)	ENSNFUG00015022646	btbd11a (ENSNFUG00015022372)	cry1a (ENSNFUG00015018834)	tnnt2c (ENSNFUG00015018733) #22	SYT10 (ENSNFUG00015018728)	ENSNFUG00015018727	ENSNFUG00015018708	CYB5R3 (ENSNFUG00015018146)	SYT1A (ENSNFUG00015018114)	ENSNFUG00015018105	PAWR (ENSNFUG00015018098)	ppp1r12a (ENSNFUG00015018078)	ENSNFUG00015018069	RPS16 (ENSNFUG00015018063)	ENSNFUG00015018060	ENSNFUG00015018056	myf6 (ENSNFUG00015018050)	myf5 (ENSNFUG00015018047)	lin7a (ENSNFUG00015018040)
Cyprinodontoidei	ANCESTRAL SPECIES	20	ENSGT00950000182999.b.a.a	ENSGT00390000005378	ENSGT00940000166611	ENSGT00950000182885.B	ENSGT00950000182885.C.b	ENSGT00390000010777	ENSGT00390000006088	ENSGT00940000168896	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00840000130048.b	ENSGT00940000162287.B.a.c	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a #22	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a	ENSGT00950000182959.a.a	ENSGT00940000153222.a.a	ENSGT00940000157479	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347
Poeciliinae	ANCESTRAL SPECIES	19	ENSGT00390000005378	ENSGT00940000166611	ENSGT00950000182885.B	ENSGT00950000182885.C.b	ENSGT00390000010777	ENSGT00390000006088	ENSGT00940000168896	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000162287.B.a.c	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a #22	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a	ENSGT00950000182959.a.a	ENSGT00940000153222.a.a	ENSGT00940000157479	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347
Poecilia	ANCESTRAL SPECIES	29	ENSGT00390000005378	ENSGT00940000166611	ENSGT00950000182885.B	ENSGT00950000182885.C.b	ENSGT00390000010777	ENSGT00390000006088	ENSGT00940000168896	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000162287.B.a.c	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a #22	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a	ENSGT00950000182959.a.a	ENSGT00940000153222.a.a	ENSGT00940000157479	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347
NAME_6	ANCESTRAL SPECIES	55	ENSGT00940000160124	ENSGT00950000182999.b.a.a	ENSGT00390000005378	ENSGT00940000166611	ENSGT00950000182885.B	ENSGT00950000182885.C.b	ENSGT00390000010777	ENSGT00390000006088	ENSGT00940000168896	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a #22	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a	ENSGT00950000182959.a.a	ENSGT00940000153222.a.a	ENSGT00940000157479	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347
Sailfin molly	MODERN SPECIES	727													ENSPLAG00000019592	cry1a (ENSPLAG00000019630)	ENSPLAG00000019637	tnnt2c (ENSPLAG00000019641) #22	syt10 (ENSPLAG00000019662)	ENSPLAG00000019673
Amazon molly	MODERN SPECIES	320	klhl42 (ENSPFOG00000018095)	ENSPFOG00000023570	nrip2 (ENSPFOG00000024434)	itfg2 (ENSPFOG00000018076)	ascl1a (ENSPFOG00000018073)	pah (ENSPFOG00000018041)	th2 (ENSPFOG00000018017)	nup37 (ENSPFOG00000017980)	parpbp (ENSPFOG00000017952)	ENSPFOG00000017948	igf1 (ENSPFOG00000017930)	ENSPFOG00000017913	btbd11a (ENSPFOG00000017882)	ENSPFOG00000017877	cry1a (ENSPFOG00000017846)	tnnt2c (ENSPFOG00000020848) #22	syt10 (ENSPFOG00000017820)	ENSPFOG00000017778	cyb5r3 (ENSPFOG00000017742)	syt1a (ENSPFOG00000017713)	pawr (ENSPFOG00000017689)	ppp1r12a (ENSPFOG00000017528)	rps16 (ENSPFOG00000017508)	myf6 (ENSPFOG00000017498)	myf5 (ENSPFOG00000017488)	lin7a (ENSPFOG00000017480)	ACSS3 (ENSPFOG00000017417)	ppfia2 (ENSPFOG00000017112)	ENSPFOG00000022280	ENSPFOG00000016986	foxm1 (ENSPFOG00000016962)
NAME_4	ANCESTRAL SPECIES	16	ENSGT00940000160124	ENSGT00950000182999.b.a.a	ENSGT00390000005378	ENSGT00940000166611	ENSGT00950000182885.B	ENSGT00950000182885.C.b	ENSGT00390000010777	ENSGT00390000006088	ENSGT00940000168896	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000162287.B.a.c	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a #22	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a	ENSGT00950000182959.a.a	ENSGT00940000153222.a.a	ENSGT00940000157479	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347
Mummichog	MODERN SPECIES	2321	nrip2 (ENSFHEG00000003337)	itfg2 (ENSFHEG00000003361)	ascl1a (ENSFHEG00000003373)	pah (ENSFHEG00000003406)	th2 (ENSFHEG00000003433)	nup37 (ENSFHEG00000003503)	parpbp (ENSFHEG00000003517)	ENSFHEG00000003530	igf1 (ENSFHEG00000003547)	ENSFHEG00000003558	ENSFHEG00000003583	ENSFHEG00000003596	btbd11a (ENSFHEG00000003637)	cry1a (ENSFHEG00000003663)	ENSFHEG00000003669	tnnt2c (ENSFHEG00000003676) #22	syt10 (ENSFHEG00000003696)	ENSFHEG00000003698
Oryzias	ANCESTRAL SPECIES	20	ENSGT00940000154983.c.b	ENSGT00940000160124	ENSGT00950000182999.b.a.a	ENSGT00390000005378	ENSGT00940000166611	ENSGT00950000182885.B	ENSGT00950000182885.C.b	ENSGT00390000010777	ENSGT00390000006088	ENSGT00940000168896	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g.c	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a #22	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a.d	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a	ENSGT00950000182959.a.a	ENSGT00940000153222.a.a	ENSGT00940000157479	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347
Oryzias_a	ANCESTRAL SPECIES	15	ENSGT00940000154983.c.b	ENSGT00940000160124	ENSGT00950000182999.b.a.a	ENSGT00390000005378	ENSGT00940000166611	ENSGT00950000182885.B	ENSGT00950000182885.C.b	ENSGT00390000010777	ENSGT00390000006088	ENSGT00940000168896	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g.c	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a #22	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a.d	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00390000013067.l.k.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a	ENSGT00950000182959.a.a	ENSGT00940000153222.a.a	ENSGT00940000157479	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000166093	ENSGT00940000158804
Chinese medaka	DUPLICATION
Chinese medaka	MODERN SPECIES	53	klhl42 (ENSOSIG00000007247)	nrip2 (ENSOSIG00000007246)	itfg2 (ENSOSIG00000007245)	ascl1a (ENSOSIG00000007243)	pah (ENSOSIG00000007090)	th2 (ENSOSIG00000006727)	nup37 (ENSOSIG00000006723)	parpbp (ENSOSIG00000006718)	ENSOSIG00000006717	igf1 (ENSOSIG00000006715)	ENSOSIG00000006713	ENSOSIG00000006712	btbd11a (ENSOSIG00000006349)	cry1a (ENSOSIG00000004452)	MTERF2 (ENSOSIG00000004407)	tnnt2c (ENSOSIG00000004405) #22	syt10 (ENSOSIG00000004402)	ENSOSIG00000004396	cyb5r3 (ENSOSIG00000003779)	syt1a (ENSOSIG00000003691)
Chinese medaka	MODERN SPECIES	51	klhl42 (ENSOSIG00000010254)	nrip2 (ENSOSIG00000010252)	itfg2 (ENSOSIG00000010251)	ascl1a (ENSOSIG00000010250)	pah (ENSOSIG00000008674)	th2 (ENSOSIG00000008247)	nup37 (ENSOSIG00000008243)	parpbp (ENSOSIG00000008240)	ENSOSIG00000008239	ENSOSIG00000008238	ENSOSIG00000008237	igf1 (ENSOSIG00000008154)	btbd11a (ENSOSIG00000008093)	cry1a (ENSOSIG00000007925)	MTERF2 (ENSOSIG00000007922)	tnnt2c (ENSOSIG00000007920) #22	syt10 (ENSOSIG00000007919)	ENSOSIG00000007916	ENSOSIG00000007911	syt1a (ENSOSIG00000007909)	pawr (ENSOSIG00000007906)	ppp1r12a (ENSOSIG00000007904)	myf6 (ENSOSIG00000007902)	myf5 (ENSOSIG00000007901)	lin7a (ENSOSIG00000007898)	ACSS3 (ENSOSIG00000007896)	RPS16 (ENSOSIG00000007851)	ppfia2 (ENSOSIG00000005522)	ENSOSIG00000005445	foxm1 (ENSOSIG00000005386)	ENSOSIG00000005383
Japanese Medaka HdrR	MODERN SPECIES	15	klhl42 (ENSORLG00000016542)	nrip2 (ENSORLG00000016536)	itfg2 (ENSORLG00000016526)	ascl1a (ENSORLG00000016504)	pah (ENSORLG00000016500)	th2 (ENSORLG00000016488)	nup37 (ENSORLG00000016475)	parpbp (ENSORLG00000016457)	ENSORLG00000016450	igf1 (ENSORLG00000016443)	ENSORLG00000027418	cox6b2 (ENSORLG00000016425)	btbd11a (ENSORLG00000016422)	ENSORLG00000016390	cry1a (ENSORLG00000016410)	tnnt2c (ENSORLG00000016386) #22	syt10 (ENSORLG00000016381)	ENSORLG00000016372	cyb5r3 (ENSORLG00000018656)	syt1a (ENSORLG00000016339)	pawr (ENSORLG00000026995)	ppp1r12a (ENSORLG00000016314)	rps16 (ENSORLG00000016271)	myf6 (ENSORLG00000016261)	myf5 (ENSORLG00000016257)	lin7a (ENSORLG00000030538)	ACSS3 (ENSORLG00000016249)	ppfia2 (ENSORLG00000016236)	ENSORLG00000016174	foxm1 (ENSORLG00000016140)	rhno1 (ENSORLG00000026209)
Oryzias_b	ANCESTRAL SPECIES	19	ENSGT00940000154983.c.b	ENSGT00940000160124	ENSGT00950000182999.b.a.a	ENSGT00390000005378	ENSGT00940000166611	ENSGT00950000182885.B	ENSGT00950000182885.C.b	ENSGT00390000010777	ENSGT00390000006088	ENSGT00940000168896	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g.c	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a #22	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a.d	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a	ENSGT00950000182959.a.a	ENSGT00940000153222.a.a	ENSGT00940000157479	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347
Indian medaka	MODERN SPECIES	2	klhl42 (ENSOMEG00000003121)	nrip2 (ENSOMEG00000003128)	elapor2b (ENSOMEG00000003209)	itfg2 (ENSOMEG00000003265)	ascl1a (ENSOMEG00000003274)	pah (ENSOMEG00000003302)	th2 (ENSOMEG00000003320)	nup37 (ENSOMEG00000003353)	parpbp (ENSOMEG00000003398)	ENSOMEG00000003411	igf1 (ENSOMEG00000003424)	ENSOMEG00000003451	btbd11a (ENSOMEG00000003530)	cry1a (ENSOMEG00000003568)	ENSOMEG00000003581	tnnt2c (ENSOMEG00000003593) #22	syt10 (ENSOMEG00000003610)	ENSOMEG00000003669	cyb5r3 (ENSOMEG00000003698)	syt1a (ENSOMEG00000003714)	pawr (ENSOMEG00000003730)	ppp1r12a (ENSOMEG00000003801)	rps16 (ENSOMEG00000003840)	myf6 (ENSOMEG00000003855)	myf5 (ENSOMEG00000003862)	lin7a (ENSOMEG00000003884)	ACSS3 (ENSOMEG00000003964)	ppfia2 (ENSOMEG00000004094)	ENSOMEG00000004125	foxm1 (ENSOMEG00000004150)	ENSOMEG00000004155
Percomorphaceae_C	ANCESTRAL SPECIES	22	ENSGT00390000005378	ENSGT00940000166611	ENSGT00950000182885.B	ENSGT00950000182885.C.b	ENSGT00390000010777	ENSGT00390000006088	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000172707.b	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a #22	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a	ENSGT00950000182959.a.a	ENSGT00940000153222.a.a	ENSGT00940000157479	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347
Eupercaria	ANCESTRAL SPECIES	21	ENSGT00940000160124	ENSGT00950000182999.b.a.a	ENSGT00390000005378	ENSGT00940000166611	ENSGT00950000182885.B	ENSGT00950000182885.C.b	ENSGT00390000010777	ENSGT00390000006088	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a #22	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a	ENSGT00950000182959.a.a	ENSGT00940000153222.a.a	ENSGT00940000157479	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347
Tetraodontidae	ANCESTRAL SPECIES	17	ENSGT00940000160124	ENSGT00950000182999.b.a.a	ENSGT00390000005378	ENSGT00940000166611	ENSGT00950000182885.B	ENSGT00950000182885.C.b	ENSGT00390000010777	ENSGT00390000006088	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT01030000234576.D.a.a.b.a.a.a.a.a.b.a.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a #22	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a	ENSGT00390000000406.d	ENSGT00940000156120.a	ENSGT00390000013067.l.l	ENSGT01010000222336.b.a.b.a	ENSGT00390000002796	ENSGT00940000157659	ENSGT00940000158094	ENSGT00940000157502	ENSGT00940000158420	ENSGT00940000159226	ENSGT00940000157638
Tetraodon	MODERN SPECIES	11	snrpf (ENSTNIG00000012672)	amdhd1 (ENSTNIG00000012671)	tspan9b (ENSTNIG00000012670)	elapor2b (ENSTNIG00000012669)	klhl42 (ENSTNIG00000012668)	pah (ENSTNIG00000012667)	th2 (ENSTNIG00000012666)	nup37 (ENSTNIG00000012665)	parpbp (ENSTNIG00000012664)	pmch (ENSTNIG00000001324)	igf1 (ENSTNIG00000012663)	ENSTNIG00000000656	btbd11a (ENSTNIG00000012662)	ENSTNIG00000012661	cry1a (ENSTNIG00000012660)	tnnt2c (ENSTNIG00000012659) #22	syt10 (ENSTNIG00000012658)	ENSTNIG00000012657	cyb5r3 (ENSTNIG00000012656)	syt1a (ENSTNIG00000012655)	ENSTNIG00000012654	pawr (ENSTNIG00000012653)	ppp1r12a (ENSTNIG00000012652)	rps16 (ENSTNIG00000012651)	acot14 (ENSTNIG00000012650)	creb3l2 (ENSTNIG00000012649)	ENSTNIG00000012648	RASSF3 (ENSTNIG00000012647)	gnsa (ENSTNIG00000012646)	TBC1D30 (ENSTNIG00000012645)	prkcq (ENSTNIG00000012644)
Fugu	MODERN SPECIES	9	elapor2b (ENSTRUG00000014753)	klhl42 (ENSTRUG00000014743)	nrip2 (ENSTRUG00000023306)	itfg2 (ENSTRUG00000014649)	ascl1a (ENSTRUG00000012801)	pah (ENSTRUG00000014530)	th2 (ENSTRUG00000014467)	nup37 (ENSTRUG00000014428)	parpbp (ENSTRUG00000014361)	pmch (ENSTRUG00000014356)	igf1 (ENSTRUG00000022135)	ENSTRUG00000025881	btbd11a (ENSTRUG00000014167)	cry1a (ENSTRUG00000014032)	MTERF2 (ENSTRUG00000014030)	tnnt2c (ENSTRUG00000014014) #22	syt10 (ENSTRUG00000013939)	ENSTRUG00000013873	cyb5r3 (ENSTRUG00000020838)	syt1a (ENSTRUG00000013727)	pawr (ENSTRUG00000013694)	ppp1r12a (ENSTRUG00000013358)	rps16 (ENSTRUG00000028064)	acot14 (ENSTRUG00000013235)	ssbp1 (ENSTRUG00000013183)	creb3l2 (ENSTRUG00000013114)	RASSF3 (ENSTRUG00000012661)	gnsa (ENSTRUG00000012451)	TBC1D30 (ENSTRUG00000012364)	prkcq (ENSTRUG00000011933)	SFMBT2 (ENSTRUG00000011786)
Eupecaria_A	ANCESTRAL SPECIES	21	ENSGT00940000154983.c.b	ENSGT00940000160124	ENSGT00950000182999.b.a.a	ENSGT00390000005378	ENSGT00940000166611	ENSGT00950000182885.B	ENSGT00950000182885.C.b	ENSGT00390000010777	ENSGT00390000006088	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a #22	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a	ENSGT00950000182959.a.a	ENSGT00940000153222.a.a	ENSGT00940000157479	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347
Ballan wrasse	MODERN SPECIES	288	btg1 (ENSLBEG00000021173)	fam3c (ENSLBEG00000021194)	ENSLBEG00000021230	dram1 (ENSLBEG00000021279)	washc3 (ENSLBEG00000021335)	ENSLBEG00000021362	ENSLBEG00000021382	ENSLBEG00000021405	mcat (ENSLBEG00000021435)	ENSLBEG00000021449	ttll1 (ENSLBEG00000021464)	pacsin2 (ENSLBEG00000021510)	arfgap3 (ENSLBEG00000021563)	IKBIP (ENSLBEG00000021638)	ENSLBEG00000021657	tnnt2c (ENSLBEG00000021670) #22	syt10 (ENSLBEG00000021731)	ENSLBEG00000021784	cyb5r3 (ENSLBEG00000021856)	syt1a (ENSLBEG00000021895)	pawr (ENSLBEG00000021925)	ppp1r12a (ENSLBEG00000021962)	rps16 (ENSLBEG00000022009)	myf6 (ENSLBEG00000022039)	myf5 (ENSLBEG00000022115)	lin7a (ENSLBEG00000022140)	ACSS3 (ENSLBEG00000022189)
Eupecaria_B	ANCESTRAL SPECIES	21	ENSGT00940000154983.c.b	ENSGT00940000160124	ENSGT00950000182999.b.a.a	ENSGT00390000005378	ENSGT00940000166611	ENSGT00950000182885.B	ENSGT00950000182885.C.b	ENSGT00390000010777	ENSGT00390000006088	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a #22	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a	ENSGT00950000182959.a.a	ENSGT00940000153222.a.a	ENSGT00940000157479	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347
Eupecaria_C	ANCESTRAL SPECIES	18	ENSGT00950000182999.b.a.a	ENSGT00390000005378	ENSGT00940000166611	ENSGT00950000182885.B	ENSGT00950000182885.C.b	ENSGT00390000010777	ENSGT00390000006088	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT01100000263491.a.b.a.a.a.a.b.s.b	ENSGT00400000022326.b.a.b.a.a	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a #22	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a	ENSGT00950000182959.a.a	ENSGT00940000153222.a.a	ENSGT00940000157479	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347
Gilthead seabream	MODERN SPECIES	5	klhl42 (ENSSAUG00010017856)	nrip2 (ENSSAUG00010017853)	itfg2 (ENSSAUG00010017851)	ascl1a (ENSSAUG00010017842)	ascl1a (ENSSAUG00010017839)	pah (ENSSAUG00010015550)	th2 (ENSSAUG00010015244)	nup37 (ENSSAUG00010015237)	parpbp (ENSSAUG00010015235)	pmch (ENSSAUG00010015234)	igf1 (ENSSAUG00010015109)	ENSSAUG00010015101	btbd11a (ENSSAUG00010014766)	cry1a (ENSSAUG00010012268)	ENSSAUG00010012243	tnnt2c (ENSSAUG00010012240) #22	syt10 (ENSSAUG00010012236)	ENSSAUG00010020501	cyb5r3 (ENSSAUG00010020421)	syt1a (ENSSAUG00010020377)	pawr (ENSSAUG00010020373)	ppp1r12a (ENSSAUG00010020166)	rps16 (ENSSAUG00010020153)	myf6 (ENSSAUG00010020152)	myf5 (ENSSAUG00010020150)	lin7a (ENSSAUG00010020149)	ACSS3 (ENSSAUG00010019831)	ppfia2 (ENSSAUG00010017685)	ENSSAUG00010017530	foxm1 (ENSSAUG00010017515)	rhno1 (ENSSAUG00010017512)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	22	ENSGT00950000182999.b.a.a	ENSGT00390000005378	ENSGT00940000166611	ENSGT00950000182885.B	ENSGT00950000182885.C.b	ENSGT00390000010777	ENSGT00390000006088	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT01100000263491.a.b.a.a.a.a.b.s.b	ENSGT00400000022326.b.a.b.a.a	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a #22	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a	ENSGT00950000182959.a.a	ENSGT00940000153222.a.a	ENSGT00940000157479	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347
Large yellow croaker	MODERN SPECIES	491	elapor2b (ENSLCRG00005015142)	klhl42 (ENSLCRG00005015458)	itfg2 (ENSLCRG00005015463)	nrip2 (ENSLCRG00005015516)	ascl1a (ENSLCRG00005015517)	pah (ENSLCRG00005015533)	th2 (ENSLCRG00005017198)	nup37 (ENSLCRG00005017388)	parpbp (ENSLCRG00005017399)	ENSLCRG00005017401	igf1 (ENSLCRG00005017409)	ENSLCRG00005017539	btbd11a (ENSLCRG00005017547)	cry1a (ENSLCRG00005017690)	MTERF2 (ENSLCRG00005017798)	tnnt2c (ENSLCRG00005017799) #22	syt10 (ENSLCRG00005017801)	ENSLCRG00005017806	cyb5r3 (ENSLCRG00005017871)	syt1a (ENSLCRG00005018056)	ENSLCRG00005018060	ENSLCRG00005018062	pawr (ENSLCRG00005018063)	ENSLCRG00005018065	ppp1r12a (ENSLCRG00005018071)	rps16 (ENSLCRG00005018085)	myf6 (ENSLCRG00005018091)	myf5 (ENSLCRG00005018093)	lin7a (ENSLCRG00005018096)	ACSS3 (ENSLCRG00005018098)	ppfia2 (ENSLCRG00005018255)
European seabass	MODERN SPECIES	23	ENSDLAG00005023868	ENSDLAG00005023668	ENSDLAG00005027813	ENSDLAG00005026892	igf1 (ENSDLAG00005023625)	pmch (ENSDLAG00005023620)	parpbp (ENSDLAG00005023617)	NUP37 (ENSDLAG00005023603)	th2 (ENSDLAG00005023520)	pah (ENSDLAG00005022732)	ENSDLAG00005022698	ENSDLAG00005027036	ENSDLAG00005022693	ENSDLAG00005022472	ENSDLAG00005022457	ENSDLAG00005022452 #22	ENSDLAG00005022430	ENSDLAG00005022300	ENSDLAG00005022253	ENSDLAG00005022245	PAWR (ENSDLAG00005022241)	ppp1r12a (ENSDLAG00005028115)	ENSDLAG00005022222	myf6 (ENSDLAG00005034355)	myf5 (ENSDLAG00005022213)	lin7a (ENSDLAG00005031546)	ACSS3 (ENSDLAG00005021975)	ppfia2 (ENSDLAG00005020955)	ENSDLAG00005020737	ENSDLAG00005020722	ENSDLAG00005020708
Perciformes	ANCESTRAL SPECIES	18	ENSGT00940000154983.c.b	ENSGT00940000160124	ENSGT00950000182999.b.a.a	ENSGT00390000005378	ENSGT00940000166611	ENSGT00950000182885.B	ENSGT00950000182885.C.b	ENSGT00390000010777	ENSGT00390000006088	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a #22	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a	ENSGT00950000182959.a.a	ENSGT00940000153222.a.a	ENSGT00940000157479	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347
Cottioidei	ANCESTRAL SPECIES	19	ENSGT00940000160124	ENSGT00950000182999.b.a.a	ENSGT00390000005378	ENSGT00940000166611	ENSGT00950000182885.B	ENSGT00950000182885.C.b	ENSGT00390000010777	ENSGT00390000006088	ENSGT00940000168896	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a #22	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a	ENSGT00950000182959.a.a	ENSGT00940000153222.a.a	ENSGT00940000157479	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347
Lumpfish	MODERN SPECIES	15	mtpn (ENSCLMG00005022629)	chrm2a (ENSCLMG00005022632)	ptn (ENSCLMG00005022634)	ENSCLMG00005022635	ENSCLMG00005022636	TULP3 (ENSCLMG00005022637)	rhno1 (ENSCLMG00005022638)	foxm1 (ENSCLMG00005022640)	ENSCLMG00005022642	ppfia2 (ENSCLMG00005022654)	ACSS3 (ENSCLMG00005022661)	lin7a (ENSCLMG00005022672)	myf5 (ENSCLMG00005022673)	myf6 (ENSCLMG00005022674)	rps16 (ENSCLMG00005022675)	tnnt2c (ENSCLMG00005022676) #22	syt10 (ENSCLMG00005022677)	ENSCLMG00005022678	ENSCLMG00005022685	cyb5r3 (ENSCLMG00005022705)	syt1a (ENSCLMG00005022718)	ENSCLMG00005022719	pawr (ENSCLMG00005022721)	ppp1r12a (ENSCLMG00005022725)	tcp11l2 (ENSCLMG00005022733)	FUT9 (ENSCLMG00005022735)	ENSCLMG00005022740	ENSCLMG00005010584	ENSCLMG00005010600	ENSCLMG00005010604	si:dkeyp-38g8.5 (ENSCLMG00005010605)
Stickleback	MODERN SPECIES	3	tspan9b (ENSGACG00000020053)	elapor2b (ENSGACG00000020052)	klhl42 (ENSGACG00000020051)	nrip2 (ENSGACG00000020050)	itfg2 (ENSGACG00000020049)	ascl1a (ENSGACG00000020048)	th2 (ENSGACG00000020047)	nup37 (ENSGACG00000020046)	parpbp (ENSGACG00000020045)	ENSGACG00000020044	igf1 (ENSGACG00000020042)	ENSGACG00000020041	btbd11a (ENSGACG00000020040)	cry1a (ENSGACG00000020037)	ENSGACG00000020036	tnnt2c (ENSGACG00000020034) #22	syt10 (ENSGACG00000020031)	ENSGACG00000020026	cyb5r3 (ENSGACG00000020019)	syt1a (ENSGACG00000020017)	pawr (ENSGACG00000020015)	ppp1r12a (ENSGACG00000020012)	rps16 (ENSGACG00000020009)	myf6 (ENSGACG00000020008)	lin7a (ENSGACG00000020007)	ACSS3 (ENSGACG00000019999)	ppfia2 (ENSGACG00000019995)	ENSGACG00000019993	llph (ENSGACG00000019992)	hcls1 (ENSGACG00000019990)	ENSGACG00000019988
Perciformes_a	ANCESTRAL SPECIES	19	ENSGT00940000154983.c.b	ENSGT00940000160124	ENSGT00950000182999.b.a.a	ENSGT00390000005378	ENSGT00940000166611	ENSGT00950000182885.B	ENSGT00950000182885.C.b	ENSGT00390000010777	ENSGT00390000006088	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a #22	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a	ENSGT00950000182959.a.a	ENSGT00940000153222.a.a	ENSGT00940000157479	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347
Channel bull blenny	MODERN SPECIES	15	amdhd1 (ENSCGOG00000022850)	snrpf (ENSCGOG00000022853)	ntn4 (ENSCGOG00000022863)	usp44 (ENSCGOG00000022864)	ENSCGOG00000022865	metap2b (ENSCGOG00000022870)	vezt (ENSCGOG00000022915)	fgd6 (ENSCGOG00000022921)	ndufa12 (ENSCGOG00000022941)	TMCC3 (ENSCGOG00000022948)	eri1 (ENSCGOG00000022952)	LAMB1 (ENSCGOG00000022966)	dclre1c (ENSCGOG00000023371)	meig1 (ENSCGOG00000023503)	tmem243b (ENSCGOG00000023504)	tnnt2c (ENSCGOG00000002697) #22	syt10 (ENSCGOG00000002710)	ENSCGOG00000002901	cyb5r3 (ENSCGOG00000005612)	syt1a (ENSCGOG00000005760)	pawr (ENSCGOG00000005900)	ppp1r12a (ENSCGOG00000005924)	rps16 (ENSCGOG00000006422)	myf6 (ENSCGOG00000006445)	myf5 (ENSCGOG00000006451)	lin7a (ENSCGOG00000006454)	ACSS3 (ENSCGOG00000006462)	ppfia2 (ENSCGOG00000006725)	ENSCGOG00000011470	foxm1 (ENSCGOG00000012088)	rhno1 (ENSCGOG00000012090)
Percomorphaceae_D	ANCESTRAL SPECIES	22	ENSGT00940000160124	ENSGT00950000182999.b.a.a	ENSGT00390000005378	ENSGT00940000166611	ENSGT00950000182885.B	ENSGT00950000182885.C.b	ENSGT00390000010777	ENSGT00390000006088	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a #22	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a	ENSGT00950000182959.a.a	ENSGT00940000153222.a.a	ENSGT00940000157479	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347
Anabantaria	ANCESTRAL SPECIES	21	ENSGT00940000160124	ENSGT00950000182999.b.a.a	ENSGT00390000005378	ENSGT00940000166611	ENSGT00950000182885.B	ENSGT00950000182885.C.b	ENSGT00390000010777	ENSGT00390000006088	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00940000163513	ENSGT00950000183169.A.a.a	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00940000154709.a.a #22	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a	ENSGT00950000182959.a.a	ENSGT00940000153222.a.a	ENSGT00940000157479	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347
Anabantoidei	ANCESTRAL SPECIES	21	ENSGT00940000160124	ENSGT00950000182999.b.a.a	ENSGT00390000005378	ENSGT00940000166611	ENSGT00950000182885.B	ENSGT00950000182885.C.b	ENSGT00390000010777	ENSGT00390000006088	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00940000163513	ENSGT00950000183169.A.a.a	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00940000154709.a.a #22	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a	ENSGT00950000182959.a.a	ENSGT00940000153222.a.a	ENSGT00940000157479	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000157779	ENSGT00940000158580	ENSGT01040000240400.c.a.b.a.a.d.a.b.b
Climbing perch	MODERN SPECIES	14	ENSATEG00000022701	klhl42 (ENSATEG00000022766)	ENSATEG00000022782	itfg2 (ENSATEG00000022806)	ENSATEG00000022825	pah (ENSATEG00000022831)	th2 (ENSATEG00000022864)	NUP37 (ENSATEG00000022933)	parpbp (ENSATEG00000022956)	pmch (ENSATEG00000022998)	igf1 (ENSATEG00000023026)	ENSATEG00000023044	ENSATEG00000029039	btbd11a (ENSATEG00000023064)	ENSATEG00000023083	tnnt2c (ENSATEG00000023096) #22	ENSATEG00000023107	ENSATEG00000026602	ENSATEG00000023121	ENSATEG00000023152	ENSATEG00000023170	ENSATEG00000023210	ENSATEG00000023226	ENSATEG00000023236	myf6 (ENSATEG00000023242)	myf5 (ENSATEG00000023249)	lin7a (ENSATEG00000023252)	ACSS3 (ENSATEG00000023260)	ppfia2 (ENSATEG00000023284)	ENSATEG00000023298	ENSATEG00000025485
Zig-zag eel	MODERN SPECIES	15	ENSMAMG00000026753	ENSMAMG00000016348	klhl42 (ENSMAMG00000016338)	ENSMAMG00000016311	itfg2 (ENSMAMG00000016273)	ENSMAMG00000016256	pah (ENSMAMG00000016220)	th2 (ENSMAMG00000016040)	nup37 (ENSMAMG00000016017)	parpbp (ENSMAMG00000016003)	pmch (ENSMAMG00000015727)	igf1 (ENSMAMG00000015704)	ENSMAMG00000015670	btbd11a (ENSMAMG00000015616)	ENSMAMG00000015580	tnnt2c (ENSMAMG00000015546) #22	ENSMAMG00000015509	ENSMAMG00000024270	ENSMAMG00000015433	ENSMAMG00000015393	ENSMAMG00000015373	ENSMAMG00000015337	ppp1r12a (ENSMAMG00000015240)	ENSMAMG00000015224	myf6 (ENSMAMG00000015217)	myf5 (ENSMAMG00000015202)	lin7a (ENSMAMG00000015174)	ACSS3 (ENSMAMG00000015114)	ppfia2 (ENSMAMG00000014966)	ENSMAMG00000014909	ENSMAMG00000014899
Carangaria	ANCESTRAL SPECIES	22	ENSGT00940000160124	ENSGT00950000182999.b.a.a	ENSGT00390000005378	ENSGT00940000166611	ENSGT00950000182885.B	ENSGT00950000182885.C.b	ENSGT00390000010777	ENSGT00390000006088	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a #22	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a	ENSGT00950000182959.a.a	ENSGT00940000153222.a.a	ENSGT00940000157479	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347
Pleuronectoidei	ANCESTRAL SPECIES	16	ENSGT00940000154983.c.b	ENSGT00940000160124	ENSGT00950000182999.b.a.a	ENSGT00390000005378	ENSGT00940000166611	ENSGT00950000182885.B	ENSGT00950000182885.C.b	ENSGT00390000010777	ENSGT00390000006088	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a #22	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a	ENSGT00950000182959.a.a	ENSGT00940000153222.a.a	ENSGT00940000157479	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347
Turbot	MODERN SPECIES	11	klhl42 (ENSSMAG00000005334)	ENSSMAG00000022137	itfg2 (ENSSMAG00000005257)	ENSSMAG00000005248	pah (ENSSMAG00000005207)	th2 (ENSSMAG00000005181)	nup37 (ENSSMAG00000005160)	parpbp (ENSSMAG00000005145)	pmch (ENSSMAG00000022672)	igf1 (ENSSMAG00000005115)	ENSSMAG00000030625	ENSSMAG00000005081	btbd11a (ENSSMAG00000005012)	ENSSMAG00000004964	ENSSMAG00000005003	tnnt2c (ENSSMAG00000004942) #22	ENSSMAG00000004931	ENSSMAG00000004880	ENSSMAG00000004819	ENSSMAG00000004787	ENSSMAG00000004775	ENSSMAG00000032576	myf6 (ENSSMAG00000024612)	myf5 (ENSSMAG00000004563)	ENSSMAG00000004633	lin7a (ENSSMAG00000004519)	ACSS3 (ENSSMAG00000004487)	ppfia2 (ENSSMAG00000004417)	ENSSMAG00000030237	ENSSMAG00000032625	ENSSMAG00000004385
Carangaria_A	ANCESTRAL SPECIES	21	ENSGT00940000160124	ENSGT00950000182999.b.a.a	ENSGT00390000005378	ENSGT00940000166611	ENSGT00950000182885.B	ENSGT00950000182885.C.b	ENSGT00390000010777	ENSGT00390000006088	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a #22	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a	ENSGT00950000182959.a.a	ENSGT00940000153222.a.a	ENSGT00940000157479	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347
Barramundi perch	MODERN SPECIES	292	tspan9b (ENSLCAG00010026930)	nrip2 (ENSLCAG00010026932)	itfg2 (ENSLCAG00010026936)	ascl1a (ENSLCAG00010026942)	pah (ENSLCAG00010026972)	th2 (ENSLCAG00010027029)	nup37 (ENSLCAG00010027047)	parpbp (ENSLCAG00010027051)	pmch (ENSLCAG00010027053)	igf1 (ENSLCAG00010027059)	ENSLCAG00010027073	ENSLCAG00010027076	btbd11a (ENSLCAG00010027077)	cry1a (ENSLCAG00010027085)	MTERF2 (ENSLCAG00010027093)	tnnt2c (ENSLCAG00010027095) #22	syt10 (ENSLCAG00010027097)
Seriola	ANCESTRAL SPECIES	9	ENSGT00390000018424	ENSGT01010000222336.b.a.b.a	ENSGT01050000244882.a.a.a.a.b	ENSGT00950000182824.a.a.a.a.b	ENSGT00390000009583	ENSGT00390000017998	ENSGT00940000157998	ENSGT01010000222533	ENSGT00530000064318	ENSGT00730000111164	ENSGT00390000012080	ENSGT00530000063539.b	ENSGT01020000230394.e.a.a.a.a.b	ENSGT00940000156680.b	ENSGT00990000203615.a.a.b	ENSGT00940000154709.a.a #22	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b.c	ENSGT00940000153962.b	ENSGT00940000155394.i.a	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a	ENSGT00950000182959.a.a	ENSGT00940000153222.a.a	ENSGT00940000157479	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347
Yellowtail amberjack	MODERN SPECIES	2835					kics2 (ENSSLDG00000017050)	TMEM19 (ENSSLDG00000017011)	rab3ip (ENSSLDG00000016943)	ENSSLDG00000016908	UPF2 (ENSSLDG00000016866)	slc35e3 (ENSSLDG00000016840)	nup107 (ENSSLDG00000016797)	mdm2 (ENSSLDG00000016771)	plxnb2a.1 (ENSSLDG00000016700)	abcc9 (ENSSLDG00000016593)	kcnj8 (ENSSLDG00000016562)	tnnt2c (ENSSLDG00000016544) #22	syt10 (ENSSLDG00000016524)	ENSSLDG00000016502
Tiger tail seahorse	MODERN SPECIES	433	amdhd1 (ENSHCOG00000018637)	tspan9b (ENSHCOG00000018619)	elapor2b (ENSHCOG00000018591)	ENSHCOG00000018560	itfg2 (ENSHCOG00000018527)	ENSHCOG00000018511	ascl1a (ENSHCOG00000018503)	pah (ENSHCOG00000018488)	th2 (ENSHCOG00000018465)	nup37 (ENSHCOG00000018356)	parpbp (ENSHCOG00000018307)	igf1 (ENSHCOG00000018270)	ENSHCOG00000018199	btbd11a (ENSHCOG00000018163)	cry1a (ENSHCOG00000018111)	tnnt2c (ENSHCOG00000018063) #22	syt10 (ENSHCOG00000018057)	ENSHCOG00000018040	ENSHCOG00000017982	TULP3 (ENSHCOG00000017974)	ENSHCOG00000017961	foxm1 (ENSHCOG00000017947)	ENSHCOG00000017941	ppfia2 (ENSHCOG00000017898)	ACSS3 (ENSHCOG00000017835)	lin7a (ENSHCOG00000017797)	myf5 (ENSHCOG00000017783)	myf6 (ENSHCOG00000017768)	rps16 (ENSHCOG00000017762)	ppp1r12a (ENSHCOG00000017732)	pawr (ENSHCOG00000017688)
Pinecone sodierfish	MODERN SPECIES	15	elapor2b (ENSMMDG00005018739)	klhl42 (ENSMMDG00005018749)	nrip2 (ENSMMDG00005018750)	itfg2 (ENSMMDG00005018758)	ascl1a (ENSMMDG00005018763)	pah (ENSMMDG00005018768)	th2 (ENSMMDG00005018778)	nup37 (ENSMMDG00005018813)	parpbp (ENSMMDG00005018818)	ENSMMDG00005018820	igf1 (ENSMMDG00005018826)	ENSMMDG00005018912	btbd11a (ENSMMDG00005018917)	cry1a (ENSMMDG00005018951)	MTERF2 (ENSMMDG00005020073)	tnnt2c (ENSMMDG00005020074) #22	syt10 (ENSMMDG00005020079)	ENSMMDG00005020084	ENSMMDG00005020134	cyb5r3 (ENSMMDG00005020515)	syt1a (ENSMMDG00005020740)	pawr (ENSMMDG00005020744)	ppp1r12a (ENSMMDG00005020751)	rps16 (ENSMMDG00005020764)	ENSMMDG00005020765	myf6 (ENSMMDG00005020767)	myf5 (ENSMMDG00005020770)	lin7a (ENSMMDG00005020771)	ACSS3 (ENSMMDG00005020784)	ppfia2 (ENSMMDG00005021115)	ENSMMDG00005023019
Cod	MODERN SPECIES	17	cradd (ENSGMOG00000010443)	socs2 (ENSGMOG00000025287)	ncaph2 (ENSGMOG00000003228)	sco2 (ENSGMOG00000003285)	ntn4 (ENSGMOG00000009327)	ENSGMOG00000007741	amdhd1 (ENSGMOG00000007738)	pah (ENSGMOG00000001263)	th2 (ENSGMOG00000001233)	nup37 (ENSGMOG00000001219)	parpbp (ENSGMOG00000001191)	IGF1 (ENSGMOG00000030090)	ENSGMOG00000001151	btbd11a (ENSGMOG00000001108)	ENSGMOG00000001088	tnnt2c (ENSGMOG00000001076) #22	ENSGMOG00000003257	ENSGMOG00000010347	ENSGMOG00000034372	ENSGMOG00000028775	ENSGMOG00000014279	ENSGMOG00000035632	ENSGMOG00000029906	ENSGMOG00000032127	ENSGMOG00000030892	ENSGMOG00000031826	ENSGMOG00000034711	ENSGMOG00000022997	ENSGMOG00000026861	ENSGMOG00000007316	ENSGMOG00000032228
Protacanthopterygii	ANCESTRAL SPECIES	23	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a	ENSGT00940000158997	ENSGT00940000165344	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000157479	ENSGT00940000153222.a.a	ENSGT00950000182959.a.a	ENSGT00950000182959.a.b.b.a	ENSGT00390000013067.l	ENSGT00940000154709.a.a #22	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00400000022326.b.a.a	ENSGT00940000154649.A.r	ENSGT01030000234982	ENSGT00940000157275.a	ENSGT00390000005848	ENSGT00940000156334.a.b	ENSGT00390000003290	ENSGT00940000155016	ENSGT00940000160526
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	90	ENSGT00730000111007.a.a.k.b	ENSGT00940000158997.f	ENSGT00940000165344.c	ENSGT00730000111007.a.a.l	ENSGT00940000158997.e.b	ENSGT00940000165344.d	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000157479.d	ENSGT00940000157479.c	ENSGT00940000153222.a.a	ENSGT00950000182959.a.a.e	ENSGT00950000182959.a.a.f	ENSGT00950000182959.a.b.b.a	ENSGT00390000013067.l.j	ENSGT00390000013067.l.i	ENSGT00940000154709.a.a.e #22	ENSGT00940000158899.i.b	ENSGT01050000244951.a.b.a.b.b.h	ENSGT00940000153962.b.e.b	ENSGT00940000155394.i.a.f	ENSGT00390000000406.i.b	ENSGT00940000164178.h.a.a.b	ENSGT00940000156120.a.g	ENSGT01100000263556.a.a.q.d.r	ENSGT00390000018272.j.b	ENSGT00400000022326.b.a.a.a	ENSGT00940000154649.A.r.b.b.a.b	ENSGT00940000154649.A.r.b.b.b.a	ENSGT01030000234982.j.b	ENSGT00940000154649.A.r.a	ENSGT00940000157275.a.a
Salmoninae_a	ANCESTRAL SPECIES	167											ENSGT00940000157479.c	ENSGT00940000153222.a.a.cb	ENSGT00950000182959.a.a.f	ENSGT00950000182959.a.b.b.a	ENSGT00390000013067.l.j	ENSGT00940000154709.a.a.e #22	ENSGT00940000158899.i.b	ENSGT01050000244951.a.b.a.b.b.h	ENSGT00940000153962.b.e.b	ENSGT00940000155394.i.a.f	ENSGT00390000000406.i.a	ENSGT00940000164178.h.a.a.a	ENSGT00940000156120.a.h	ENSGT00530000063817.b.b	ENSGT00400000022326.b.a.a.b	ENSGT00940000154649.A.r.b.b.a.a
Oncorhynchus	ANCESTRAL SPECIES	22	ENSGT00940000158039.h.u	ENSGT00390000004044.h	ENSGT00940000157862.v	ENSGT00990000203541.a.a.a.a.a.k	ENSGT00390000009380.e.b	ENSGT00940000164333.f	ENSGT00730000111007.a.a.l.b	ENSGT00940000158997.e.b.a	ENSGT00940000165344.d.b	ENSGT01050000244900.a.a.a.a.b.bb.i.a	ENSGT00940000157479.c	ENSGT00940000153222.a.a.cb	ENSGT00950000182959.a.a.f	ENSGT00950000182959.a.b.b.a.c	ENSGT00390000013067.l.j	ENSGT00940000154709.a.a.e #22	ENSGT00940000158899.i.b	ENSGT01050000244951.a.b.a.b.b.h	ENSGT00940000153962.b.e.b	ENSGT00940000155394.i.a.f	ENSGT00390000000406.i.a	ENSGT00940000164178.h.a.a.a	ENSGT00940000156120.a.h	ENSGT00530000063817.b.b	ENSGT01100000263556.a.a.q.d.r.a.b.c.a	ENSGT01100000263556.a.a.q.d.r.a.a	ENSGT01100000263556.a.a.q.d.r.a.b.d	ENSGT00940000167339	ENSGT01100000263549.k.b	ENSGT00390000018272.j.b	ENSGT01090000260033.b.h.b.a
Oncorhynchus_a	ANCESTRAL SPECIES	31	ENSGT00390000004044.h	ENSGT00940000157862.v	ENSGT00990000203541.a.a.a.a.a.k	ENSGT00390000009380.e.b	ENSGT00940000164333.f	ENSGT00730000111007.a.a.l.b	ENSGT00940000158997.e.b.a	ENSGT00940000158997.e.a	ENSGT00940000165344.d.b	ENSGT01050000244900.a.a.a.a.b.bb.i.a	ENSGT00940000157479.c	ENSGT00940000153222.a.a.cb	ENSGT00950000182959.a.a.f	ENSGT00950000182959.a.b.b.a.c	ENSGT00390000013067.l.j	ENSGT00940000154709.a.a.e #22	ENSGT00940000158899.i.b	ENSGT01050000244951.a.b.a.b.b.h	ENSGT00940000153962.b.e.b	ENSGT00940000155394.i.a.f	ENSGT00390000000406.i.a	ENSGT00940000164178.h.a.a.a	ENSGT00940000156120.a.h	ENSGT00530000063817.b.b	ENSGT01100000263556.a.a.q.d.r.a.b.c.a	ENSGT01100000263556.a.a.q.d.r.a.a	ENSGT01100000263556.a.a.q.d.r.a.b.d	ENSGT00940000167339	ENSGT01100000263549.k.b	ENSGT00390000018272.j.b	ENSGT01090000260033.b.h.b.a
Chinook salmon	MODERN SPECIES	8	ENSOTSG00005034153	lhfpl3 (ENSOTSG00005034151)	orc5 (ENSOTSG00005034150)	guca1a (ENSOTSG00005034149)	ENSOTSG00005020017	hcls1 (ENSOTSG00005020015)	ENSOTSG00005020014	llph (ENSOTSG00005020013)	ENSOTSG00005020012	ppfia2 (ENSOTSG00005020005)	ACSS3 (ENSOTSG00005018688)	lin7a (ENSOTSG00005018677)	myf5 (ENSOTSG00005018671)	myf6 (ENSOTSG00005018667)	rps16 (ENSOTSG00005018664)	tnnt2c (ENSOTSG00005018663) #22	syt10 (ENSOTSG00005018655)	ENSOTSG00005011764	cyb5r3 (ENSOTSG00005010535)	syt1a (ENSOTSG00005010532)	pawr (ENSOTSG00005010530)	ENSOTSG00005010529	ppp1r12a (ENSOTSG00005010523)	MTERF2 (ENSOTSG00005010519)	ENSOTSG00005010518	ENSOTSG00005010517	ENSOTSG00005010515	ENSOTSG00005010516	kitlgb (ENSOTSG00005010514)	ENSOTSG00005010513	ENSOTSG00005010512
Coho salmon	MODERN SPECIES	10	KDM7A (ENSOKIG00005037241)	ndufb2 (ENSOKIG00005037334)	ENSOKIG00005037359	lhfpl3 (ENSOKIG00005037430)	orc5 (ENSOKIG00005037458)	guca1a (ENSOKIG00005037538)	ENSOKIG00005037557	hcls1 (ENSOKIG00005037631)	llph (ENSOKIG00005037949)	ppfia2 (ENSOKIG00005038115)	ACSS3 (ENSOKIG00005042154)	lin7a (ENSOKIG00005042387)	myf5 (ENSOKIG00005042418)	myf6 (ENSOKIG00005042479)	rps16 (ENSOKIG00005042520)	tnnt2c (ENSOKIG00005042597) #22	syt10 (ENSOKIG00005042620)	ENSOKIG00005042681	CYB5R3 (ENSOKIG00005043270)	SYT1 (ENSOKIG00005044230)	pawr (ENSOKIG00005044327)	ENSOKIG00005044330	PPP1R12A (ENSOKIG00005044359)	ENSOKIG00005044459	MTERF2 (ENSOKIG00005044462)	ENSOKIG00005044470	ENSOKIG00005044496	ENSOKIG00005044503	kitlgb (ENSOKIG00005044521)	ENSOKIG00005044574	ENSOKIG00005044586
Rainbow trout	MODERN SPECIES	6	ENSOMYG00000013028	ndufb2 (ENSOMYG00000013001)	ENSOMYG00000012992	lhfpl3 (ENSOMYG00000012982)	orc5 (ENSOMYG00000012964)	guca1a (ENSOMYG00000012949)	ENSOMYG00000012933	hcls1 (ENSOMYG00000012684)	llph (ENSOMYG00000012619)	ppfia2 (ENSOMYG00000010771)	ACSS3 (ENSOMYG00000009811)	lin7a (ENSOMYG00000009534)	myf5 (ENSOMYG00000009433)	myf6 (ENSOMYG00000009391)	ENSOMYG00000009357	ENSOMYG00000009249 #22	ENSOMYG00000009238	ENSOMYG00000068663	ENSOMYG00000063310	ENSOMYG00000009103	ENSOMYG00000008300	ENSOMYG00000053625	ENSOMYG00000007440	ENSOMYG00000007233	ENSOMYG00000007180	ENSOMYG00000073880	ENSOMYG00000006902	ENSOMYG00000006374	ENSOMYG00000006344	ENSOMYG00000006309	ENSOMYG00000006243
Salmo	ANCESTRAL SPECIES	81	ENSGT00390000004044.g	ENSGT00940000157862.s.a	ENSGT00990000203541.a.a.a.a.a.i	ENSGT00390000009380.e.b	ENSGT00940000164333.f	ENSGT00730000111007.a.a.k.a	ENSGT00940000158997.e.a.b	ENSGT00940000158997.e.a.a	ENSGT00940000165344.d	ENSGT01050000244900.a.a.a.a.b.bb.g	ENSGT00940000157479.c	ENSGT00940000153222.a.a.cb	ENSGT00950000182959.a.a.f	ENSGT00950000182959.a.b.b.a.f	ENSGT00390000013067.l.j	ENSGT00940000154709.a.a.e #22	ENSGT00940000158899.i.a	ENSGT01050000244951.a.b.a.b.b.h	ENSGT00940000153962.b.e.b	ENSGT00940000155394.i.a.f.a	ENSGT00390000000406.i.a	ENSGT00940000164178.h.a.a.a	ENSGT00940000156120.a.h	ENSGT00530000063817.b.b	ENSGT01100000263556.a.a.q.d.r.a.b.a	ENSGT01100000263556.a.a.q.d.r.a.a
River trout	MODERN SPECIES	34	ndufb2 (ENSSTUG00000023507)	ENSSTUG00000023522	lhfpl3 (ENSSTUG00000023639)	orc5 (ENSSTUG00000023660)	guca1a (ENSSTUG00000023885)	ENSSTUG00000023891	hcls1 (ENSSTUG00000023940)	llph (ENSSTUG00000024017)	ppfia2 (ENSSTUG00000024089)	ACSS3 (ENSSTUG00000025813)	ENSSTUG00000026102	lin7a (ENSSTUG00000026114)	myf5 (ENSSTUG00000026178)	myf6 (ENSSTUG00000026265)	rps16 (ENSSTUG00000026299)	tnnt2c (ENSSTUG00000026330) #22	syt10 (ENSSTUG00000026383)	ENSSTUG00000026446	cyb5r3 (ENSSTUG00000027246)	syt1a (ENSSTUG00000027446)	pawr (ENSSTUG00000027495)	ENSSTUG00000027503	ppp1r12a (ENSSTUG00000027550)	ENSSTUG00000027757	ENSSTUG00000027774	ENSSTUG00000027792	ENSSTUG00000027803	kitlgb (ENSSTUG00000027812)	ENSSTUG00000027916	ENSSTUG00000027922	ENSSTUG00000027931
Atlantic salmon	MODERN SPECIES	8	ENSSSAG00000002335	lhfpl3 (ENSSSAG00000064408)	orc5 (ENSSSAG00000006811)	guca1a (ENSSSAG00000121021)	ENSSSAG00000006792	hcls1 (ENSSSAG00000064251)	llph (ENSSSAG00000006778)	ENSSSAG00000006772	ppfia2 (ENSSSAG00000006415)	ENSSSAG00000092189	acss3 (ENSSSAG00000006095)	myf5 (ENSSSAG00000059922)	myf6 (ENSSSAG00000066608)	ENSSSAG00000066580	ENSSSAG00000089629	ENSSSAG00000113707 #22	ENSSSAG00000095543	ENSSSAG00000083937	ENSSSAG00000059732	ENSSSAG00000059420	ENSSSAG00000059333	ENSSSAG00000111955	ENSSSAG00000049822	ENSSSAG00000059204	ENSSSAG00000059181	ENSSSAG00000059156	ENSSSAG00000059129	ENSSSAG00000059114	ENSSSAG00000048853	ENSSSAG00000083093	ENSSSAG00000083617
Huchen	MODERN SPECIES	1610													myf5 (ENSHHUG00000041246)	myf6 (ENSHHUG00000041254)	rps16 (ENSHHUG00000041325)	tnnt2c (ENSHHUG00000041347) #22	syt10 (ENSHHUG00000041360)	ENSHHUG00000041391	cyb5r3 (ENSHHUG00000041465)	syt1a (ENSHHUG00000041492)
Salmoninae	ANCESTRAL SPECIES	924															ENSGT00940000164822.eb	ENSGT00940000154709.a.a.f #22	ENSGT00940000158899.i.a	ENSGT01040000240385.A.b.b.a.b.a.a.a.b.b	ENSGT01050000244951.a.b.a.b.b.g	ENSGT00940000153962.b.e.a	ENSGT00940000155394.i.a.e
Salmoninae_a	ANCESTRAL SPECIES	11	ENSGT00390000004044.g	ENSGT00940000157862	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.a.b.b.b	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380.e.a	ENSGT00940000164333.e	ENSGT00730000111007.a.a.l	ENSGT00940000158997.e.b	ENSGT00940000165344.d	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000157479.d	ENSGT00940000153222.a.a.bb	ENSGT00950000182959.a.a.e	ENSGT00390000013067.l.i	ENSGT00940000164822.eb	ENSGT00940000154709.a.a.f #22	ENSGT00940000158899.i.a	ENSGT01040000240385.A.b.b.a.b.a.a.a.b.b	ENSGT01050000244951.a.b.a.b.b.g	ENSGT00940000153962.b.e.a	ENSGT00390000000406.i.b	ENSGT00940000164178.h.a.a.b	ENSGT00940000156120.a.g	ENSGT01100000263556.a.a.q.d.r.a.b	ENSGT00940000167339	ENSGT01100000263549.k	ENSGT00390000018272.j.a	ENSGT00400000022326.b.a.a.a	ENSGT00940000154649.A.r.b.b.a.b	ENSGT00940000154649.A.r.b.b.b.a	ENSGT01030000234982.j.b
Oncorhynchus	ANCESTRAL SPECIES	9	ENSGT00390000004044.g	ENSGT00940000157862.u.a	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.a.b.b.b	ENSGT00990000203541.a.a.a.a.a.l	ENSGT00390000009380.e.a	ENSGT00940000164333.e	ENSGT00730000111007.a.a.l.a	ENSGT00940000158997.e.b.b	ENSGT00940000165344.d.a	ENSGT01050000244900.a.a.a.a.b.bb.i.b	ENSGT00940000153222.a.a.bb	ENSGT00950000182959.a.a.e	ENSGT00950000182959.a.b.b.a.d	ENSGT00390000013067.l.i	ENSGT00940000164822.eb	ENSGT00940000154709.a.a.f #22	ENSGT00940000158899.i.a	ENSGT01040000240385.A.b.b.a.b.a.a.a.b.b	ENSGT01050000244951.a.b.a.b.b.g	ENSGT00940000153962.b.e.a	ENSGT00390000000406.i.b	ENSGT00940000164178.h.a.a.b	ENSGT00940000156120.a.g	ENSGT01100000263556.a.a.q.d.r.a.b.c.b	ENSGT01100000263549.k.a	ENSGT00940000175977	ENSGT01030000234589.h.f.b.b.a.a.a.b.b.b.a	ENSGT01090000260033.b.g.b.a.b.a.b.b.b.b.b	ENSGT01090000260033.b.g.b.b.b.a.b.a.d	ENSGT01030000234589.h.f.b.b.a.a.a.b.b.b.b	ENSGT00400000022326.b.a.a.a
Rainbow trout	MODERN SPECIES	13	lhfpl3 (ENSOMYG00000013630)	orc5 (ENSOMYG00000077068)	ENSOMYG00000013697	guca1a (ENSOMYG00000013888)	hcls1 (ENSOMYG00000013975)	llph (ENSOMYG00000013636)	ppfia2 (ENSOMYG00000014291)	ENSOMYG00000004734	ENSOMYG00000050420	lin7a (ENSOMYG00000014904)	Myf5 (ENSOMYG00000014917)	ENSOMYG00000074848	myf6 (ENSOMYG00000014934)	ENSOMYG00000014948	ENSOMYG00000014963	ENSOMYG00000014972 #22	ENSOMYG00000014985	ENSOMYG00000014997	ENSOMYG00000015082	ENSOMYG00000015363	ENSOMYG00000015469	ENSOMYG00000015520	ENSOMYG00000015530	ENSOMYG00000015664	ENSOMYG00000015860	ENSOMYG00000015882	ENSOMYG00000015887	ENSOMYG00000015906	ENSOMYG00000048940	ENSOMYG00000015959	ENSOMYG00000015961
Oncorhynchus_a	ANCESTRAL SPECIES	64	ENSGT00390000004044.g	ENSGT00940000157862.u.a	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.a.b.b.b	ENSGT00990000203541.a.a.a.a.a.l	ENSGT00390000009380.e.a	ENSGT00940000164333.e	ENSGT00730000111007.a.a.l.a	ENSGT00940000158997.e.b.b	ENSGT00940000165344.d.a	ENSGT01050000244900.a.a.a.a.b.bb.i.b	ENSGT00940000153222.a.a.bb	ENSGT00950000182959.a.a.e	ENSGT00950000182959.a.b.b.a.d	ENSGT00390000013067.l.i	ENSGT00940000164822.eb	ENSGT00940000154709.a.a.f #22	ENSGT00940000158899.i.a	ENSGT01040000240385.A.b.b.a.b.a.a.a.b.b	ENSGT01050000244951.a.b.a.b.b.g	ENSGT00940000153962.b.e.a	ENSGT00390000000406.i.b	ENSGT00940000164178.h.a.a.b	ENSGT00940000156120.a.g	ENSGT01100000263549.k.a	ENSGT00940000175977	ENSGT01030000234589.h.f.b.b.a.a.a.b.b.b.a	ENSGT01090000260033.b.g.b.a.b.a.b.b.b.b.b	ENSGT01090000260033.b.g.b.b.b.a.b.a.d	ENSGT01030000234589.h.f.b.b.a.a.a.b.b.b.b	ENSGT00400000022326.b.a.a.a	ENSGT00940000154649.A.r.b.b.a.b
Coho salmon	MODERN SPECIES	29	ndufb2 (ENSOKIG00005005858)	ENSOKIG00005005876	ENSOKIG00005005890	LHFPL3 (ENSOKIG00005005900)	orc5 (ENSOKIG00005005916)	guca1a (ENSOKIG00005006054)	ENSOKIG00005006075	hcls1 (ENSOKIG00005006199)	llph (ENSOKIG00005007027)	ppfia2 (ENSOKIG00005007307)	lin7a (ENSOKIG00005010877)	myf5 (ENSOKIG00005010902)	myf6 (ENSOKIG00005010942)	RPS16 (ENSOKIG00005010963)	ENSOKIG00005010986	ENSOKIG00005010999 #22	ENSOKIG00005011022	ENSOKIG00005011026	ENSOKIG00005011037	ENSOKIG00005011075	cyb5r3 (ENSOKIG00005011252)	syt1a (ENSOKIG00005012455)	PAWR (ENSOKIG00005012477)	ENSOKIG00005012494	ppp1r12a (ENSOKIG00005012576)	ENSOKIG00005012738	ENSOKIG00005012743	ENSOKIG00005012764	ENSOKIG00005012772	ENSOKIG00005012777	ENSOKIG00005012780
Chinook salmon	MODERN SPECIES	6	si:dkey-97m3.1 (ENSOTSG00005004350)	ergic2 (ENSOTSG00005004353)	KDM7A (ENSOTSG00005004384)	ndufb2 (ENSOTSG00005004411)	ENSOTSG00005004413	ENSOTSG00005004414	lhfpl3 (ENSOTSG00005004416)	orc5 (ENSOTSG00005004419)	guca1a (ENSOTSG00005004448)	ENSOTSG00005004450	lin7a (ENSOTSG00005004455)	myf5 (ENSOTSG00005004458)	myf6 (ENSOTSG00005004560)	rps16 (ENSOTSG00005004561)	ENSOTSG00005004562	tnnt2c (ENSOTSG00005004568) #22	syt10 (ENSOTSG00005004578)	ENSOTSG00005004580	ENSOTSG00005004581	ENSOTSG00005004585	cyb5r3 (ENSOTSG00005004729)	ENSOTSG00005006364	zgc:113263 (ENSOTSG00005006366)	ENSOTSG00005006367	ENSOTSG00005006370	ENSOTSG00005006371	ENSOTSG00005006373	ENSOTSG00005006375	ENSOTSG00005006377	ENSOTSG00005006379	ENSOTSG00005006391
Salmo	ANCESTRAL SPECIES	25	ENSGT00940000157862.s.b	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.a.b.b.b	ENSGT00990000203541.a.a.a.a.a.j	ENSGT00390000009380.e.a	ENSGT00940000164333.e	ENSGT00730000111007.a.a.k.b	ENSGT00940000158997.e.b	ENSGT00940000165344.c	ENSGT01050000244900.a.a.a.a.b.bb.h	ENSGT00940000157479.d	ENSGT00940000153222.a.a.bb	ENSGT00950000182959.a.a.e	ENSGT00950000182959.a.b.b.a.e	ENSGT00390000013067.l.i	ENSGT00940000164822.eb.a	ENSGT00940000154709.a.a.f #22	ENSGT00940000158899.i.b	ENSGT01040000240385.A.b.b.a.b.a.a.a.b.b	ENSGT01050000244951.a.b.a.b.b.g	ENSGT00940000153962.b.e.a	ENSGT00940000155394.i.a.f.b	ENSGT00390000000406.i.b	ENSGT00940000164178.h.a.a.b	ENSGT00940000156120.a.g	ENSGT01100000263556.a.a.q.d.r.a.b.b	ENSGT00940000167339.r	ENSGT01100000263549.k	ENSGT00390000018272.j.a	ENSGT01090000260033.b.g.b.a.b.a.b.b.b.b.b	ENSGT01090000260033.b.g.b.b.b.a.b.a.a.b	ENSGT01030000234589.h.e.a.b
River trout	MODERN SPECIES	38	ENSSTUG00000035873	ENSSTUG00000035865	lhfpl3 (ENSSTUG00000035854)	orc5 (ENSSTUG00000035808)	guca1a (ENSSTUG00000035796)	ENSSTUG00000035760	hcls1 (ENSSTUG00000035213)	llph (ENSSTUG00000035187)	ppfia2 (ENSSTUG00000032738)	ACSS3 (ENSSTUG00000032599)	lin7a (ENSSTUG00000032580)	myf5 (ENSSTUG00000032573)	myf6 (ENSSTUG00000032558)	rps16 (ENSSTUG00000032534)	ENSSTUG00000032519	tnnt2c (ENSSTUG00000032501) #22	syt10 (ENSSTUG00000032485)	ENSSTUG00000032479	ENSSTUG00000031897	cyb5r3 (ENSSTUG00000030947)	syt1a (ENSSTUG00000030907)	pawr (ENSSTUG00000030899)	ENSSTUG00000030863	ppp1r12a (ENSSTUG00000030696)	ENSSTUG00000030667	ENSSTUG00000030613	ENSSTUG00000030624	ENSSTUG00000030595	ENSSTUG00000030588	ENSSTUG00000027335	ENSSTUG00000027327
Atlantic salmon	MODERN SPECIES	26	ENSSSAG00000069201	ENSSSAG00000064417	lhfpl3 (ENSSSAG00000082371)	orc5 (ENSSSAG00000064371)	guca1a (ENSSSAG00000085222)	ENSSSAG00000064357	hcls1 (ENSSSAG00000005879)	llph (ENSSSAG00000064235)	ppfia2 (ENSSSAG00000060373)	ACSS3 (ENSSSAG00000060026)	lin7a (ENSSSAG00000086615)	myf5 (ENSSSAG00000006004)	myf6 (ENSSSAG00000059887)	ENSSSAG00000109892	ENSSSAG00000059832	ENSSSAG00000090411 #22	ENSSSAG00000059802	ENSSSAG00000059783	ENSSSAG00000050368	ENSSSAG00000049921	ENSSSAG00000120466	ENSSSAG00000092375	ENSSSAG00000099338	ENSSSAG00000108147	ENSSSAG00000059264	ENSSSAG00000049032	ENSSSAG00000048969	ENSSSAG00000101043	ENSSSAG00000048963	ENSSSAG00000048939	ENSSSAG00000092724
Huchen	MODERN SPECIES	843										ACSS3 (ENSHHUG00000043852)	lin7a (ENSHHUG00000043859)	myf5 (ENSHHUG00000043862)	myf6 (ENSHHUG00000043876)	rps16 (ENSHHUG00000043904)	ENSHHUG00000043915	tnnt2c (ENSHHUG00000043922) #22	syt10 (ENSHHUG00000043941)	ENSHHUG00000043988	ENSHHUG00000043992	cyb5r3 (ENSHHUG00000044032)	syt1a (ENSHHUG00000044047)
Northern pike	MODERN SPECIES	22	ndufb2 (ENSELUG00000002225)	ENSELUG00000002258	ENSELUG00000026586	ENSELUG00000028784	lhfpl3 (ENSELUG00000002269)	orc5 (ENSELUG00000002281)	guca1a (ENSELUG00000002288)	ENSELUG00000002315	hcls1 (ENSELUG00000002347)	llph (ENSELUG00000026094)	ppfia2 (ENSELUG00000002421)	ACSS3 (ENSELUG00000002474)	lin7a (ENSELUG00000002488)	myf5 (ENSELUG00000002500)	rps16 (ENSELUG00000002505)	tnnt2c (ENSELUG00000002535) #22	syt10 (ENSELUG00000002545)	ENSELUG00000002578	cyb5r3 (ENSELUG00000001118)	syt1a (ENSELUG00000002624)	pawr (ENSELUG00000002637)	ppp1r12a (ENSELUG00000002794)	ENSELUG00000002871	kitlgb (ENSELUG00000002894)	ENSELUG00000031374	ENSELUG00000028990	ENSELUG00000024788	ENSELUG00000028612	ENSELUG00000030654	ENSELUG00000027779	ENSELUG00000002914
Otomorpha	ANCESTRAL SPECIES	486												ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a #22	ENSGT00530000063825.A.c.e	ENSGT00940000153962.b	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000158899
Clupeiformes	ANCESTRAL SPECIES	211													ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a #22	ENSGT00530000063825.A.c.e	ENSGT00940000153962.b	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000158899	ENSGT00390000002793	ENSGT00940000158969	ENSGT00390000017324	ENSGT00940000167467	ENSGT00940000165713	ENSGT00540000070023.c.b	ENSGT00940000155210.a.b	ENSGT00950000182839.B.a.a.k	ENSGT00940000158677	ENSGT00940000160423.b	ENSGT00940000153544.b
Denticle herring	MODERN SPECIES	6	gch2 (ENSDCDG00000021253)	socs5a (ENSDCDG00000021257)	CCR8 (ENSDCDG00000021316)	OPN4 (ENSDCDG00000021327)	ldb3b (ENSDCDG00000021348)	BMPR1A (ENSDCDG00000021374)	SNCG (ENSDCDG00000022668)	glud1b (ENSDCDG00000022676)	ppm1bb (ENSDCDG00000022702)	ENSDCDG00000022707	six2b (ENSDCDG00000022710)	PRKCE (ENSDCDG00000022722)	ENSDCDG00000022903	btbd11a (ENSDCDG00000022910)	cry1a (ENSDCDG00000023919)	tnnt2c (ENSDCDG00000024879) #22	si:dkey-222f8.3 (ENSDCDG00000024882)	cyb5r3 (ENSDCDG00000024886)	ENSDCDG00000024927	syt10 (ENSDCDG00000025399)	ints13 (ENSDCDG00000025410)	ANO6 (ENSDCDG00000026083)	COG5 (ENSDCDG00000026302)	gpr22a (ENSDCDG00000026390)	dus4l (ENSDCDG00000026392)	bcap29 (ENSDCDG00000026394)	slco1c1 (ENSDCDG00000026401)	PDE3A (ENSDCDG00000026646)	ENSDCDG00000026655	aebp2 (ENSDCDG00000026658)	plekha5 (ENSDCDG00000026675)
Atlantic herring	MODERN SPECIES	7	ENSCHAG00000017986	ENSCHAG00000018002	pwp2h (ENSCHAG00000018030)	ENSCHAG00000018277	ENSCHAG00000018339	ENSCHAG00000018343	ENSCHAG00000018365	ENSCHAG00000018393	rpap3 (ENSCHAG00000018420)	ENSCHAG00000018460	ENSCHAG00000018478	ENSCHAG00000018506	btbd11a (ENSCHAG00000018552)	cry1a (ENSCHAG00000019111)	ENSCHAG00000019339	tnnt2c (ENSCHAG00000019347) #22	si:dkey-222f8.3 (ENSCHAG00000019390)	slc26a3.1 (ENSCHAG00000019565)	slc26a4 (ENSCHAG00000020573)	ENSCHAG00000021131	ENSCHAG00000021139	ENSCHAG00000021147	mcat (ENSCHAG00000021150)	ENSCHAG00000021158	ttll1 (ENSCHAG00000021160)	pacsin2 (ENSCHAG00000000898)	arfgap3 (ENSCHAG00000001497)	ENSCHAG00000001748	uhrf1bp1l (ENSCHAG00000002645)	ENSCHAG00000005835	anks1b (ENSCHAG00000005896)
Otophysi	ANCESTRAL SPECIES	269													ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00940000154709.a.a #22	ENSGT00530000063825.A.c.e	ENSGT00940000153962.b	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000158899	ENSGT00530000063745.b	ENSGT00390000006546	ENSGT00440000033504.B.b	ENSGT00940000155867.a.b.e	ENSGT00940000161249	ENSGT00940000167336	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000153969.a	ENSGT00950000182994.B.a.b	ENSGT00940000160326.c.b	ENSGT00940000160326.c.a
Characiphysae	ANCESTRAL SPECIES	15	ENSGT00390000011980.a.i.b	ENSGT00940000153908.a	ENSGT00440000033863	ENSGT00940000161146	ENSGT00940000159018.c	ENSGT00940000154822.a	ENSGT00950000183077.a.a	ENSGT00940000162201.o.d	ENSGT00390000000068.a.a	ENSGT00390000015299.a.b.b.a.f	ENSGT00390000011401	ENSGT00940000156154	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00940000154709.a.a #22	ENSGT00530000063825.A.c.e	ENSGT00940000153962.b	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000158899	ENSGT00940000157963	ENSGT00940000163299.B.b.b.j	ENSGT00940000156144.a.b	ENSGT00530000063745.b	ENSGT00390000006546	ENSGT00440000033504.B.b	ENSGT00940000155867.a.b.e	ENSGT00940000161249	ENSGT00940000167336	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000153969.a
Characiphysae_b	ANCESTRAL SPECIES	102	ENSGT00940000153908.a	ENSGT00440000033863	ENSGT00940000161146	ENSGT00940000159018.c	ENSGT00940000154822.a	ENSGT00950000183077.a.a	ENSGT00940000162201.o.d	ENSGT00390000000068.a.a	ENSGT00390000015299.a.b.b.a.f	ENSGT00390000011401	ENSGT00940000156154	ENSGT00390000008061.j.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00940000154709.a.a #22	ENSGT00530000063825.A.c.e	ENSGT00940000153962.b	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000158899
Characoidei	ANCESTRAL SPECIES	96	ENSGT00940000153908.a	ENSGT00440000033863	ENSGT00940000161146	ENSGT00940000159018.c	ENSGT00940000154822.a	ENSGT00950000183077.a.a	ENSGT00940000162201.o.d	ENSGT00390000000068.a.a	ENSGT00390000015299.a.b.b.a.f	ENSGT00390000011401	ENSGT00940000156154	ENSGT00390000008061.j.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00940000154709.a.a #22	ENSGT00530000063825.A.c.e	ENSGT00940000153962.b	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000158899
Red-bellied piranha	MODERN SPECIES	41	mgst1.1 (ENSPNAG00000008768)	lmo3 (ENSPNAG00000001182)	ENSPNAG00000008739	arhgef39 (ENSPNAG00000001177)	rergla (ENSPNAG00000008726)	ENSPNAG00000001170	TMEM121B (ENSPNAG00000008710)	mkrn1 (ENSPNAG00000008708)	ENSPNAG00000008695	cnot4b (ENSPNAG00000008679)	tmem178bb (ENSPNAG00000001136)	mrps33 (ENSPNAG00000008638)	braf (ENSPNAG00000008630)	btbd11a (ENSPNAG00000001119)	cry1a (ENSPNAG00000006718)	tnnt2c (ENSPNAG00000001084) #22	si:dkey-222f8.3 (ENSPNAG00000008556)	cyb5r3 (ENSPNAG00000008543)	ENSPNAG00000008523	syt10 (ENSPNAG00000001045)	ENSPNAG00000005178	ENSPNAG00000008459
Mexicana tetra	MODERN SPECIES	22							TMEM178B (ENSAMXG00000043186)	mrps33 (ENSAMXG00000043198)	braf (ENSAMXG00000011513)	ENSAMXG00000024989	btbd11a (ENSAMXG00000043749)	ENSAMXG00000005431	cry1a (ENSAMXG00000005406)	ENSAMXG00000043474	ENSAMXG00000031949	tnnt2c (ENSAMXG00000025742) #22	si:dkey-222f8.3 (ENSAMXG00000005380)	cyb5r3 (ENSAMXG00000037793)	ENSAMXG00000005360	syt10 (ENSAMXG00000000324)	ENSAMXG00000029987	ENSAMXG00000031709	ENSAMXG00000000926	ENSAMXG00000036009	ENSAMXG00000000922	ENSAMXG00000040305	ENSAMXG00000030640	ENSAMXG00000010368	prmt8b (ENSAMXG00000019502)	tspan11 (ENSAMXG00000010362)	sema3aa (ENSAMXG00000010349)
Electric eel	MODERN SPECIES	58	ENSEEEG00000017778	lmo3 (ENSEEEG00000017775)	arhgef39 (ENSEEEG00000017773)	rergla (ENSEEEG00000017769)	ENSEEEG00000017762	TMEM121B (ENSEEEG00000017757)	mkrn1 (ENSEEEG00000017755)	ENSEEEG00000017754	cnot4b (ENSEEEG00000017741)	tmem178bb (ENSEEEG00000017739)	mrps33 (ENSEEEG00000017738)	braf (ENSEEEG00000017556)	ENSEEEG00000017536	btbd11a (ENSEEEG00000017533)	cry1a (ENSEEEG00000017367)	tnnt2c (ENSEEEG00000017363) #22	si:dkey-222f8.3 (ENSEEEG00000017362)	cyb5r3 (ENSEEEG00000017318)	ENSEEEG00000017290	ENSEEEG00000017287	syt10 (ENSEEEG00000017286)	ENSEEEG00000017284
Channel catfish	MODERN SPECIES	10	dera (ENSIPUG00000016710)	mgst1 (ENSIPUG00000016739)	lmo3 (ENSIPUG00000016756)	arhgef39 (ENSIPUG00000016797)	rergl (ENSIPUG00000016826)	Il17ra (ENSIPUG00000016862)	cecr6 (ENSIPUG00000016945)	mkrn1 (ENSIPUG00000016956)	ENSIPUG00000016980	cnot4b (ENSIPUG00000016994)	tmem178b (ENSIPUG00000017092)	Mrps33 (ENSIPUG00000017102)	braf (ENSIPUG00000017122)	btbd11a (ENSIPUG00000017196)	cry1a (ENSIPUG00000017249)	tnnt2c (ENSIPUG00000017363) #22	si:dkey-222f8.3 (ENSIPUG00000017413)	si:dkey-222f8.3 (ENSIPUG00000017464)	Cyb5r3 (ENSIPUG00000017567)	ENSIPUG00000017624	ENSIPUG00000017723	ENSIPUG00000017728	ENSIPUG00000017740	spag6 (ENSIPUG00000017752)	syt10 (ENSIPUG00000017790)	ENSIPUG00000017809	ENSIPUG00000017834	tmtc2 (ENSIPUG00000017846)	mettl25 (ENSIPUG00000017885)	ccdc59 (ENSIPUG00000017904)	ENSIPUG00000017914
Cyprinoidei	ANCESTRAL SPECIES	28	ENSGT00390000006546	ENSGT00940000164603	ENSGT00940000155867.a.b.e	ENSGT00940000161249	ENSGT00940000167336	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000153969.a	ENSGT00950000182994.B.a.b	ENSGT00940000160326.c.b	ENSGT00940000160326.c.a	ENSGT00940000155849.h	ENSGT00390000001702	ENSGT00730000111314	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00940000154709.a.a #22	ENSGT00530000063825.A.c.e	ENSGT00940000156154	ENSGT00390000011401	ENSGT00390000015299.a.b.b.a.f	ENSGT00390000000068.a.a	ENSGT00940000162201.o.d	ENSGT00950000183077.a.a	ENSGT00940000154822.a	ENSGT00940000165644.f	ENSGT00940000161146	ENSGT00440000033863	ENSGT00940000153908.a	ENSGT00390000011980.a.i.b	ENSGT00390000011980.a.i.a	ENSGT00390000007878
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	223	ENSGT00940000156144.a.b	ENSGT00530000063745.b.d	ENSGT00390000006546	ENSGT00940000155867.a.b.e.b	ENSGT00940000161249.h	ENSGT00940000167336.h	ENSGT00620000087961.a.b.a.b.a.a	ENSGT00940000153969.a.c	ENSGT00950000182994.B.a.b.jb	ENSGT00940000160326.c.b	ENSGT00940000155849.h.f	ENSGT00390000001702.m.b	ENSGT00940000153962.b.l.a	ENSGT00940000156419.b.b	ENSGT00940000155455.g.b	ENSGT00940000154709.a.a.g #22	ENSGT00530000063825.A.c.e.e	ENSGT00940000156154.j	ENSGT00390000011401.tb	ENSGT00390000015299.a.b.b.a.f.b	ENSGT00390000000068.a.a.b	ENSGT00950000183077.a.a.d	ENSGT00940000154822.a.a	ENSGT00940000165644.f.a	ENSGT00940000161146.b	ENSGT00440000033863.b	ENSGT00940000153908.a.h	ENSGT00390000007878.k	ENSGT00390000006913.i.a	ENSGT00940000161222.b	ENSGT00940000165013.b.a.a.d
Cyprininae_a	ANCESTRAL SPECIES	123	ENSGT00940000156144.a.b	ENSGT00530000063745.b.d	ENSGT00390000006546	ENSGT00940000155867.a.b.e.b	ENSGT00940000161249.h	ENSGT00940000167336.h	ENSGT00620000087961.a.b.a.b.a.a	ENSGT00940000153969.a.c	ENSGT00950000182994.B.a.b.jb	ENSGT00940000160326.c.b	ENSGT00940000155849.h.f	ENSGT00390000001702.m.b	ENSGT00940000153962.b.l.a	ENSGT00940000156419.b.b	ENSGT00940000155455.g.b	ENSGT00940000154709.a.a.g #22	ENSGT00530000063825.A.c.e.e	ENSGT00940000156154.j	ENSGT00390000011401.tb	ENSGT00390000015299.a.b.b.a.f.b	ENSGT00390000000068.a.a.b	ENSGT00940000162201.o.d.a	ENSGT00950000183077.a.a.d	ENSGT00940000154822.a.a	ENSGT00940000165644.f.a	ENSGT00940000161146.b	ENSGT00440000033863.b	ENSGT00940000153908.a.h	ENSGT00390000011980.a.i.b.b	ENSGT00390000007878.k	ENSGT00390000006913.i.a
Golden-line barbel	MODERN SPECIES		ENSSGRG00000000050	prmt8b (ENSSGRG00000000051)	tspan11 (ENSSGRG00000000052)	sema3aa (ENSSGRG00000000053)	ENSSGRG00000000054	ankrd16 (ENSSGRG00000000055)	gdi2 (ENSSGRG00000000056)	ENSSGRG00000000057	ENSSGRG00000000058	net1 (ENSSGRG00000000059)	mkln1 (ENSSGRG00000000061)	ENSSGRG00000000062	cyb5r3 (ENSSGRG00000000063)	btbd11a (ENSSGRG00000000064)	cry1a (ENSSGRG00000000066)	tnnt2c (ENSSGRG00000000067) #22	si:dkey-222f8.3 (ENSSGRG00000000068)	braf (ENSSGRG00000000069)	mrps33 (ENSSGRG00000000070)	mrps33 (ENSSGRG00000000071)	tmem178bb (ENSSGRG00000000073)	cnot4b (ENSSGRG00000000074)	ENSSGRG00000000083	mkrn1 (ENSSGRG00000000108)	TMEM121B (ENSSGRG00000000178)	ENSSGRG00000000184	rergla (ENSSGRG00000000198)	arhgef39 (ENSSGRG00000000213)	lmo3 (ENSSGRG00000000230)	mgst1.1 (ENSSGRG00000000245)	mgst1.2 (ENSSGRG00000000248)
Common carp reference	MODERN SPECIES	36	ENSCCRG00000026690	ENSCCRG00000055807	ENSCCRG00000078200	prmt8b (ENSCCRG00000016702)	tspan11 (ENSCCRG00000034051)	sema3aa (ENSCCRG00000002617)	ENSCCRG00000069279	ankrd16 (ENSCCRG00000035612)	gdi2 (ENSCCRG00000020991)	asb13a.1 (ENSCCRG00000054229)	net1 (ENSCCRG00000070124)	mkln1 (ENSCCRG00000021153)	cyb5r3 (ENSCCRG00000047732)	btbd11a (ENSCCRG00000064579)	cry1a (ENSCCRG00000071926)	tnnt2c (ENSCCRG00000060066) #22	si:dkey-222f8.3 (ENSCCRG00000046054)	braf (ENSCCRG00000045169)	tmem178bb (ENSCCRG00000070254)	mrps33 (ENSCCRG00000064138)	cnot4b (ENSCCRG00000045647)	mkrn1 (ENSCCRG00000081664)	ENSCCRG00000016156	ENSCCRG00000081214	il17ra1a (ENSCCRG00000016165)	rergla (ENSCCRG00000066677)	arhgef39 (ENSCCRG00000059910)	lmo3 (ENSCCRG00000078113)	mgst1.1 (ENSCCRG00000055104)	dera (ENSCCRG00000056089)	ENSCCRG00000042894
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	2376					sema3aa (ENSCARG00000065866)	ENSCARG00000065815	ENSCARG00000065793	gdi2 (ENSCARG00000065578)	asb13a.1 (ENSCARG00000065557)	net1 (ENSCARG00000065399)	ENSCARG00000065344	mkln1 (ENSCARG00000065109)	cyb5r3 (ENSCARG00000064649)	btbd11a (ENSCARG00000064377)	cry1a (ENSCARG00000062813)	tnnt2c (ENSCARG00000062770) #22	si:dkey-222f8.3 (ENSCARG00000062750)	braf (ENSCARG00000058715)	mrps33 (ENSCARG00000058535)	tmem178bb (ENSCARG00000058513)
Goldfish	MODERN SPECIES	21	trpc3 (ENSCARG00000013595)	gstp1.2 (ENSCARG00000013579)	fnta (ENSCARG00000013547)	ENSCARG00000013543	ENSCARG00000013540	tspan11 (ENSCARG00000013521)	sema3aa (ENSCARG00000012281)	ENSCARG00000012178	gdi2 (ENSCARG00000011726)	asb13a.1 (ENSCARG00000011678)	net1 (ENSCARG00000011590)	mkln1 (ENSCARG00000011488)	cyb5r3 (ENSCARG00000011082)	btbd11a (ENSCARG00000010980)	cry1a (ENSCARG00000010868)	tnnt2c (ENSCARG00000010836) #22	si:dkey-222f8.3 (ENSCARG00000010821)	braf (ENSCARG00000010227)	mrps33 (ENSCARG00000010184)	tmem178bb (ENSCARG00000010173)	cnot4b (ENSCARG00000010133)	mkrn1 (ENSCARG00000010065)	ENSCARG00000010044	rergla (ENSCARG00000010032)	e2f7 (ENSCARG00000010011)	csrp2 (ENSCARG00000009996)	zdhhc17 (ENSCARG00000009966)	ENSCARG00000009923	ANO6 (ENSCARG00000008732)	mrpl42 (ENSCARG00000008651)	ENSCARG00000008618
Cyprininae	ANCESTRAL SPECIES	2	ENSGT00940000163299.B.a.b.d.b.a.b.b.a.b.b	ENSGT00440000033504.B.b	ENSGT00940000155867.a.b.e.a	ENSGT00940000161249.g	ENSGT00940000167336.g	ENSGT00620000087961.a.b.a.b.a.b	ENSGT00940000153969.a.d	ENSGT00950000182994.B.a.b.ib	ENSGT00940000160326.c.a	ENSGT00940000155849.h.e	ENSGT00390000001702.m.a	ENSGT00730000111314	ENSGT00940000153962.b.l.b	ENSGT00940000156419.b.a	ENSGT00940000155455.g.a	ENSGT00940000154709.a.a.h #22	ENSGT00530000063825.A.c.e.f	ENSGT00940000156154.i	ENSGT00390000011401.ub	ENSGT00390000015299.a.b.b.a.f.a	ENSGT00390000000068.a.a.a	ENSGT00940000162201.o.d	ENSGT00950000183077.a.a.c	ENSGT00940000154822.a.b	ENSGT00940000165644.f.b	ENSGT00940000161146.a	ENSGT00440000033863.a	ENSGT00940000153908.a.g	ENSGT00390000011980.a.i.b	ENSGT00390000011980.a.i.a	ENSGT00390000007878.l
Cyprininae_a	ANCESTRAL SPECIES	354		ENSGT00440000033504.B.b	ENSGT00940000155867.a.b.e.a	ENSGT00940000161249.g	ENSGT00940000167336.g	ENSGT00620000087961.a.b.a.b.a.b	ENSGT00940000153969.a.d	ENSGT00950000182994.B.a.b.ib	ENSGT00940000160326.c.a	ENSGT00940000155849.h.e	ENSGT00390000001702.m.a	ENSGT00730000111314	ENSGT00940000153962.b.l.b	ENSGT00940000156419.b.a	ENSGT00940000155455.g.a	ENSGT00940000154709.a.a.h #22	ENSGT00530000063825.A.c.e.f	ENSGT00940000156154.i	ENSGT00390000011401.ub	ENSGT00390000015299.a.b.b.a.f.a	ENSGT00390000000068.a.a.a	ENSGT00940000162201.o.d.b	ENSGT00950000183077.a.a.c	ENSGT00940000154822.a.b	ENSGT00940000165644.f.b	ENSGT00940000161146.a	ENSGT00440000033863.a	ENSGT00940000153908.a.g	ENSGT00390000011980.a.i.b.a	ENSGT00390000011980.a.i.a
Common carp reference	MODERN SPECIES	8	ENSCCRG00000016708	prmt8b (ENSCCRG00000065134)	tspan11 (ENSCCRG00000020398)	sema3aa (ENSCCRG00000010714)	ENSCCRG00000042240	ankrd16 (ENSCCRG00000042255)	gdi2 (ENSCCRG00000071952)	net1 (ENSCCRG00000081166)	mkln1 (ENSCCRG00000044893)	podxl (ENSCCRG00000079437)	ENSCCRG00000077222	podxl (ENSCCRG00000021228)	cyb5r3 (ENSCCRG00000065651)	btbd11a (ENSCCRG00000076780)	cry1a (ENSCCRG00000077916)	tnnt2c (ENSCCRG00000074295) #22	si:dkey-222f8.3 (ENSCCRG00000079607)	braf (ENSCCRG00000016422)	mrps33 (ENSCCRG00000068537)	tmem178bb (ENSCCRG00000016350)	cnot4b (ENSCCRG00000016217)	ENSCCRG00000016331	mkrn1 (ENSCCRG00000016101)	ENSCCRG00000068066	ENSCCRG00000071533	rergla (ENSCCRG00000062704)	arhgef39 (ENSCCRG00000022093)	mgst1.1 (ENSCCRG00000028046)	mgst1.2 (ENSCCRG00000078502)	ENSCCRG00000069237	HELB (ENSCCRG00000000258)
Golden-line barbel	MODERN SPECIES	738	ENSSGRG00000009422	prmt8b (ENSSGRG00000009236)	tspan11 (ENSSGRG00000009221)	sema3aa (ENSSGRG00000008988)	ENSSGRG00000008981	ankrd16 (ENSSGRG00000008969)	gdi2 (ENSSGRG00000008739)	asb13a.2 (ENSSGRG00000008733)	net1 (ENSSGRG00000007133)	ENSSGRG00000007108	mkln1 (ENSSGRG00000006985)	podxl (ENSSGRG00000006984)	cyb5r3 (ENSSGRG00000006687)	btbd11a (ENSSGRG00000006225)	cry1a (ENSSGRG00000005770)	tnnt2c (ENSSGRG00000005762) #22	si:dkey-222f8.3 (ENSSGRG00000005761)	braf (ENSSGRG00000002312)	mrps33 (ENSSGRG00000002282)	tmem178bb (ENSSGRG00000002281)	cnot4b (ENSSGRG00000001600)	ENSSGRG00000001282	mkrn1 (ENSSGRG00000037661)	TMEM121B (ENSSGRG00000037659)	ENSSGRG00000037658	rergla (ENSSGRG00000037657)	arhgef39 (ENSSGRG00000037655)
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	33	metap2a (ENSCARG00000008341)	usp44 (ENSCARG00000008326)	scyl2 (ENSCARG00000008275)	ENSCARG00000008238	st8sia1 (ENSCARG00000008218)	tnni1d (ENSCARG00000008201) ##20	ENSCARG00000008135	42sp43 (ENSCARG00000008094)	ENSCARG00000008085	STAC2 (ENSCARG00000008073)	cratb (ENSCARG00000007303)	ppt2b (ENSCARG00000007203)	ENSCARG00000007183	ENSCARG00000007153	ENSCARG00000007097	tnnt2c (ENSCARG00000007090) #22	si:dkey-222f8.3 (ENSCARG00000007062)	braf (ENSCARG00000004724)	mrps33 (ENSCARG00000004571)	sinhcaf (ENSCARG00000004531)	caprin2 (ENSCARG00000004506)	btg1 (ENSCARG00000004492)	ENSCARG00000004485	dcn (ENSCARG00000004461)	lum (ENSCARG00000004448)	kera (ENSCARG00000004434)	ENSCARG00000004421	epyc (ENSCARG00000004404)	si:dkeyp-38g8.5 (ENSCARG00000004388)	atp2b1a (ENSCARG00000002553)	mest (ENSCARG00000002255)
Goldfish	MODERN SPECIES	33	chpt1 (ENSCARG00000028495)	dram1 (ENSCARG00000000136)	washc3 (ENSCARG00000000151)	cwf19l1 (ENSCARG00000000190)	klhl42 (ENSCARG00000000223)	nrip2 (ENSCARG00000000236)	itfg2 (ENSCARG00000000309)	recql (ENSCARG00000000390)	ascl1a (ENSCARG00000000469)	th2 (ENSCARG00000000577)	nup37 (ENSCARG00000000985)	parpbp (ENSCARG00000001013)	pmch (ENSCARG00000001019)	igf1 (ENSCARG00000001038)	cry1a (ENSCARG00000001071)	tnnt2c (ENSCARG00000001100) #22	si:dkey-222f8.3 (ENSCARG00000001106)	braf (ENSCARG00000001189)	mrps33 (ENSCARG00000001570)	tmem178bb (ENSCARG00000001574)	cnot4b (ENSCARG00000001594)	mkrn1 (ENSCARG00000001631)	TMEM121B (ENSCARG00000001638)	ENSCARG00000001649	rergla (ENSCARG00000001671)	arhgef39 (ENSCARG00000001678)	lmo3 (ENSCARG00000001688)	mgst1.1 (ENSCARG00000001703)	ENSCARG00000001708	mgst1.2 (ENSCARG00000001714)	dera (ENSCARG00000001719)
Zebrafish	MODERN SPECIES	19	prmt8b (ENSDARG00000045760)	tspan11 (ENSDARG00000001781)	sema3aa (ENSDARG00000019235)	ENSDARG00000063299	ENSDARG00000070015	ankrd16 (ENSDARG00000003822)	gdi2 (ENSDARG00000005451)	asb13a.1 (ENSDARG00000079698)	asb13a.2 (ENSDARG00000045765)	net1 (ENSDARG00000032765)	mkln1 (ENSDARG00000025576)	podxl (ENSDARG00000031228)	cyb5r3 (ENSDARG00000005891)	btbd11a (ENSDARG00000063255)	cry1a (ENSDARG00000045768)	tnnt2c (ENSDARG00000032242) #22	si:dkey-222f8.3 (ENSDARG00000058366)	braf (ENSDARG00000017661)	mrps33 (ENSDARG00000020015)	tmem178bb (ENSDARG00000006747)	cnot4b (ENSDARG00000007639)	mkrn1 (ENSDARG00000041665)	TMEM121B (ENSDARG00000087319)	il17ra1a (ENSDARG00000058244)	ENSDARG00000103365	ENSDARG00000095461	ENSDARG00000074873	ENSDARG00000104625	ENSDARG00000103215	rergla (ENSDARG00000019396)	arhgef39 (ENSDARG00000013476)
Spotted gar	MODERN SPECIES	674	ints13 (ENSLOCG00000015297)	plekhg7 (ENSLOCG00000015295)	EEA1 (ENSLOCG00000015288)	nudt4b (ENSLOCG00000015286)	ube2na (ENSLOCG00000015285)	mrpl42 (ENSLOCG00000015284)	ENSLOCG00000015283	ENSLOCG00000017898	pwp1 (ENSLOCG00000015280)	btbd11a (ENSLOCG00000015275)	cry1b (ENSLOCG00000015272)	zgc:153031 (ENSLOCG00000015270)	mterf2 (ENSLOCG00000017897)	si:ch73-62b13.1 (ENSLOCG00000015269)	ENSLOCG00000017896	tnnt2c (ENSLOCG00000017895) #22	tmem263 (ENSLOCG00000015268)	ENSLOCG00000015265	ric8b (ENSLOCG00000015262)	rfx4 (ENSLOCG00000015258)	POLR3B (ENSLOCG00000015249)	si:dkey-222f8.3 (ENSLOCG00000015248)	cyb5r3 (ENSLOCG00000015246)	REP15 (ENSLOCG00000017894)	ppfibp1b (ENSLOCG00000015237)	syt10 (ENSLOCG00000015235)	si:ch211-245j22.3 (ENSLOCG00000015234)	ENSLOCG00000015230	arntl2 (ENSLOCG00000015224)	stk38l (ENSLOCG00000015219)	ENSLOCG00000015216
Reedfish	MODERN SPECIES		st8sia1 (ENSECRG00000005734)	lmf2a (ENSECRG00000005743)	miox (ENSECRG00000005751)	ADM2 (ENSECRG00000005762)	sbf1 (ENSECRG00000005791)	ENSECRG00000005897	pwp1 (ENSECRG00000005909)	ENSECRG00000005926	btbd11a (ENSECRG00000005938)	ENSECRG00000005957	ENSECRG00000005964	cry1b (ENSECRG00000005975)	zgc:153031 (ENSECRG00000006001)	mterf2 (ENSECRG00000006010)	si:ch73-62b13.1 (ENSECRG00000006015)	tnnt2c (ENSECRG00000006018) #22	tmem263 (ENSECRG00000006021)	ENSECRG00000006030	ric8b (ENSECRG00000006043)	rfx4 (ENSECRG00000006058)	POLR3B (ENSECRG00000006087)	endouc (ENSECRG00000006132)	cyb5r3 (ENSECRG00000006143)	REP15 (ENSECRG00000006151)	ppfibp1b (ENSECRG00000006162)	ENSECRG00000006194	syt10 (ENSECRG00000006205)	si:ch211-245j22.3 (ENSECRG00000006217)	ENSECRG00000006236	stk38l (ENSECRG00000006253)	med21 (ENSECRG00000006263)