Testudinoidea	DUPLICATION
Testudinoidea	DUPLICATION
Testudinoidea	ANCESTRAL SPECIES	8	ENSGT00390000011619	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b #7	ENSGT00940000164845 #8	ENSGT00940000161305 #9	ENSGT00940000159380 #10	ENSGT00950000182843.b #11	ENSGT00940000159618 #13	ENSGT00940000160510 #14	ENSGT00950000183080.a.b.a.b.b #15	ENSGT00390000005590 #16	ENSGT00940000165232 #17	ENSGT00940000155815 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00390000006465 #20	ENSGT00940000154756.A.ce.a.b #22	ENSGT00940000153709.B #23	ENSGT01020000230359.E #24	ENSGT00940000154276 #25	ENSGT00390000000596 #26	ENSGT00530000063629.b #27	ENSGT00940000156360 #28	ENSGT00940000160089 #29	ENSGT00940000173926	ENSGT00940000158548 #30	ENSGT00940000159338.c #31	ENSGT00940000156402.B #32	ENSGT00940000166678 #34	ENSGT00940000157362 #35	ENSGT00940000159858 #36	ENSGT00940000157015 #37
Testudinidae	ANCESTRAL SPECIES	1	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b #7	ENSGT00940000164845 #8	ENSGT00940000161305 #9	ENSGT00940000159380 #10	ENSGT00950000182843.b #11	ENSGT00940000159618 #13	ENSGT00940000160510 #14	ENSGT00950000183080.a.b.a.b.b #15	ENSGT00390000005590 #16	ENSGT00940000165232 #17	ENSGT00940000155815 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00390000006465 #20	ENSGT00390000003267 #21	ENSGT00940000154756.A.ce.a.b #22	ENSGT00940000153709.B #23	ENSGT01020000230359.E #24	ENSGT00940000154276 #25	ENSGT00390000000596 #26	ENSGT00530000063629.b #27	ENSGT00940000156360 #28	ENSGT00940000160089 #29	ENSGT00940000158548 #30	ENSGT00940000159338.c #31	ENSGT00940000156402.B #32	ENSGT00940000166678 #34	ENSGT00940000157362 #35	ENSGT00940000159858 #36	ENSGT00940000157015 #37	ENSGT00940000159600
Goode s thornscrub tortoise	MODERN SPECIES	11	MYL3 (ENSGEVG00005011154) #7	ENSGEVG00005011228 #8	ALS2CL (ENSGEVG00005011324) #9	JMJD4 (ENSGEVG00005011871) #10	SNAP47 (ENSGEVG00005011922) #11	ENSGEVG00005011986 #12	WNT9A (ENSGEVG00005012041) #13	WNT3A (ENSGEVG00005012137) #14	ARF1 (ENSGEVG00005012184) #15	C1orf35 (ENSGEVG00005012210) #16	ENSGEVG00005012238 #17	GUK1 (ENSGEVG00005012265) #18	GJC2 (ENSGEVG00005012284) #19	IBA57 (ENSGEVG00005012316) #20	ENSGEVG00005012335 #21	OBSCN (ENSGEVG00005012558) #22	CYP8B1 (ENSGEVG00005014888) #23	ACKR2 (ENSGEVG00005014904) #24	HIGD1A (ENSGEVG00005014926) #25	CCDC13 (ENSGEVG00005014944) #26	HHATL (ENSGEVG00005014986) #27	KLHL40 (ENSGEVG00005015018) #28	ZBTB47 (ENSGEVG00005015102) #29	NKTR (ENSGEVG00005015149) #30	SEC22C (ENSGEVG00005015191) #31	VIPR1 (ENSGEVG00005015274) #32	ENSGEVG00005015453 #33	ENSGEVG00005015484 #34	ADCYAP1R1 (ENSGEVG00005015612) #35	GHRHR (ENSGEVG00005015776) #36	AQP1 (ENSGEVG00005015849) #37
Abingdon island giant tortoise	DUPLICATION
Abingdon island giant tortoise	MODERN SPECIES	163					ARF1 (ENSCABG00000014823) #15	C1orf35 (ENSCABG00000014826) #16	ENSCABG00000014828 #17	GUK1 (ENSCABG00000014832) #18	GJC2 (ENSCABG00000014839) #19	IBA57 (ENSCABG00000014842) #20	ENSCABG00000014846	ENSCABG00000014848 ##22	ENSCABG00000014851 #22	ENSCABG00000014855 ##22	ENSCABG00000014858 ##22	ENSCABG00000014859 #22	ENSCABG00000014861	ENSCABG00000014867	ENSCABG00000014869	ENSCABG00000014871	ENSCABG00000014876	ELAC2 (ENSCABG00000014881)	MYOCD (ENSCABG00000014911)	MAP2K4 (ENSCABG00000014914)	TMEM220 (ENSCABG00000015041)	ADPRM (ENSCABG00000015043)	SCO1 (ENSCABG00000015044)
Abingdon island giant tortoise	MODERN SPECIES	163								ARF1 (ENSCABG00000014823) #15	C1orf35 (ENSCABG00000014826) #16	ENSCABG00000014828 #17	GUK1 (ENSCABG00000014832) #18	GJC2 (ENSCABG00000014839) #19	IBA57 (ENSCABG00000014842) #20	ENSCABG00000014846	ENSCABG00000014848 ##22	ENSCABG00000014851 #22	ENSCABG00000014855 ##22	ENSCABG00000014858 ##22	ENSCABG00000014859 #22	ENSCABG00000014861	ENSCABG00000014867	ENSCABG00000014869	ENSCABG00000014871	ENSCABG00000014876	ELAC2 (ENSCABG00000014881)	MYOCD (ENSCABG00000014911)	MAP2K4 (ENSCABG00000014914)	TMEM220 (ENSCABG00000015041)	ADPRM (ENSCABG00000015043)	SCO1 (ENSCABG00000015044)
Emydidae	ANCESTRAL SPECIES																	ENSGT00940000154756.A.ce.a.b #22
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	2794																ENSTMTG00000019332 #22
Three-toed box turtle	MODERN SPECIES	2750																ENSTMTG00000018694 #22
Testudinoidea	ANCESTRAL SPECIES	46	ENSGT00940000166534	ENSGT00940000159417	ENSGT00940000154363.B	ENSGT00950000182818.D	ENSGT00390000018397	ENSGT00530000063282	ENSGT00940000155111	ENSGT00950000182860.a.a.a	ENSGT00390000012062	ENSGT00470000042293.a.b	ENSGT00950000183184.b	ENSGT00940000160724	ENSGT00940000159523	ENSGT00940000161812	ENSGT00390000003267 #21	ENSGT00940000154756.A.ce.a.a ##22	ENSGT00940000166913	ENSGT00390000015009	ENSGT00530000063909.a	ENSGT00940000159790	ENSGT01090000260005.a.a.a.b.a.a.b ##19	ENSGT00940000161778	ENSGT00940000155685	ENSGT00390000004038	ENSGT00530000063991.a	ENSGT00940000159539.d	ENSGT00940000161200	ENSGT00940000156913.a	ENSGT00550000075038	ENSGT00390000017837.a	ENSGT00940000156993
Emydidae	ANCESTRAL SPECIES	35	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b #7	ENSGT00940000164845 #8	ENSGT00940000161305 #9	ENSGT00940000159380 #10	ENSGT00950000182843.b #11	ENSGT00940000159618 #13	ENSGT00940000160510 #14	ENSGT00950000183080.a.b.a.b.b #15	ENSGT00390000005590 #16	ENSGT00940000165232 #17	ENSGT00940000155815 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00390000006465 #20	ENSGT00390000003267 #21	ENSGT00940000154756.A.ce.a.a ##22	ENSGT00940000153709.B #23	ENSGT01020000230359.E #24	ENSGT00940000154276 #25	ENSGT00390000000596 #26	ENSGT00530000063629.b #27	ENSGT00940000156360 #28	ENSGT00940000160089 #29	ENSGT00940000173926	ENSGT00940000158548 #30	ENSGT00940000159338.c #31	ENSGT00940000156402.B #32	ENSGT00940000166678 #34	ENSGT00940000157362 #35	ENSGT00940000159858 #36	ENSGT00940000157015 #37
Three-toed box turtle	DUPLICATION
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	48	MYL3 (ENSTMTG00000007625) #7	ENSTMTG00000007651 #8	ALS2CL (ENSTMTG00000007679) #9	JMJD4 (ENSTMTG00000007818) #10	SNAP47 (ENSTMTG00000007837) #11	ENSTMTG00000007845 #12	WNT9A (ENSTMTG00000007852) #13	WNT3A (ENSTMTG00000007868) #14	ARF1 (ENSTMTG00000007905) #15	C1orf35 (ENSTMTG00000007919) #16	ENSTMTG00000007926 #17	GUK1 (ENSTMTG00000007938) #18	GJC2 (ENSTMTG00000007955) #19	IBA57 (ENSTMTG00000007959) #20	ENSTMTG00000007970 #21	ENSTMTG00000008021 ##22	ENSTMTG00000008161 ##22	ENSTMTG00000008168	ENSTMTG00000008188 ##22	ENSTMTG00000008223	HIGD1A (ENSTMTG00000008234) #25	CCDC13 (ENSTMTG00000008247) #26	HHATL (ENSTMTG00000008279) #27	KLHL40 (ENSTMTG00000008321) #28	ZBTB47 (ENSTMTG00000008346) #29	ENSTMTG00000008368	ENSTMTG00000008384	NKTR (ENSTMTG00000008400) #30	SEC22C (ENSTMTG00000008427) #31	VIPR1 (ENSTMTG00000008453) #32	ENSTMTG00000008513 #34
Three-toed box turtle	MODERN SPECIES	48	JMJD4 (ENSTMTG00000007818) #10	SNAP47 (ENSTMTG00000007837) #11	ENSTMTG00000007845 #12	WNT9A (ENSTMTG00000007852) #13	WNT3A (ENSTMTG00000007868) #14	ARF1 (ENSTMTG00000007905) #15	C1orf35 (ENSTMTG00000007919) #16	ENSTMTG00000007926 #17	GUK1 (ENSTMTG00000007938) #18	GJC2 (ENSTMTG00000007955) #19	IBA57 (ENSTMTG00000007959) #20	ENSTMTG00000007970 #21	ENSTMTG00000008021 ##22	ENSTMTG00000008161 ##22	ENSTMTG00000008168	ENSTMTG00000008188 ##22	ENSTMTG00000008223	HIGD1A (ENSTMTG00000008234) #25	CCDC13 (ENSTMTG00000008247) #26	HHATL (ENSTMTG00000008279) #27	KLHL40 (ENSTMTG00000008321) #28	ZBTB47 (ENSTMTG00000008346) #29	ENSTMTG00000008368	ENSTMTG00000008384	NKTR (ENSTMTG00000008400) #30	SEC22C (ENSTMTG00000008427) #31	VIPR1 (ENSTMTG00000008453) #32	ENSTMTG00000008513 #34	ADCYAP1R1 (ENSTMTG00000008568) #35	GHRHR (ENSTMTG00000008727) #36	ENSTMTG00000008764 #37
Three-toed box turtle	MODERN SPECIES	48	ENSTMTG00000007651 #8	ALS2CL (ENSTMTG00000007679) #9	JMJD4 (ENSTMTG00000007818) #10	SNAP47 (ENSTMTG00000007837) #11	ENSTMTG00000007845 #12	WNT9A (ENSTMTG00000007852) #13	WNT3A (ENSTMTG00000007868) #14	ARF1 (ENSTMTG00000007905) #15	C1orf35 (ENSTMTG00000007919) #16	ENSTMTG00000007926 #17	GUK1 (ENSTMTG00000007938) #18	GJC2 (ENSTMTG00000007955) #19	IBA57 (ENSTMTG00000007959) #20	ENSTMTG00000007970 #21	ENSTMTG00000008021 ##22	ENSTMTG00000008161 ##22	ENSTMTG00000008168	ENSTMTG00000008188 ##22	ENSTMTG00000008223	HIGD1A (ENSTMTG00000008234) #25	CCDC13 (ENSTMTG00000008247) #26	HHATL (ENSTMTG00000008279) #27	KLHL40 (ENSTMTG00000008321) #28	ZBTB47 (ENSTMTG00000008346) #29	ENSTMTG00000008368	ENSTMTG00000008384	NKTR (ENSTMTG00000008400) #30	SEC22C (ENSTMTG00000008427) #31	VIPR1 (ENSTMTG00000008453) #32	ENSTMTG00000008513 #34	ADCYAP1R1 (ENSTMTG00000008568) #35
painted turtle	MODERN SPECIES	749	MYL3 (ENSCPBG00000001514) #7	ENSCPBG00000001521 #8	ALS2CL (ENSCPBG00000001553) #9	JMJD4 (ENSCPBG00000001622) #10	SNAP47 (ENSCPBG00000001637) #11	ENSCPBG00000001655 #12	WNT9A (ENSCPBG00000001669) #13	WNT3A (ENSCPBG00000001683) #14	ARF1 (ENSCPBG00000001732) #15	C1orf35 (ENSCPBG00000001754) #16	ENSCPBG00000001771 #17	GUK1 (ENSCPBG00000001789) #18	GJC2 (ENSCPBG00000001821) #19	IBA57 (ENSCPBG00000001832) #20	ENSCPBG00000001843 #21	OBSCN (ENSCPBG00000002168) ##22	CYP8B1 (ENSCPBG00000003980) #23	ACKR2 (ENSCPBG00000003986) #24	HIGD1A (ENSCPBG00000003994) #25	CCDC13 (ENSCPBG00000004012) #26	HHATL (ENSCPBG00000004042) #27	KLHL40 (ENSCPBG00000004071) #28	ZBTB47 (ENSCPBG00000004296) #29	ENSCPBG00000004311	ENSCPBG00000004337 #30	ENSCPBG00000004344 ##31	ENSCPBG00000004348 #31	VIPR1 (ENSCPBG00000004358) #32	ENSCPBG00000004379	ENSCPBG00000004383 #34	ADCYAP1R1 (ENSCPBG00000004400) #35
Testudinidae	ANCESTRAL SPECIES																	ENSGT00940000154756.A.ce.a.a ##22
Abingdon island giant tortoise	MODERN SPECIES	163						ARF1 (ENSCABG00000014823) #15	C1orf35 (ENSCABG00000014826) #16	ENSCABG00000014828 #17	GUK1 (ENSCABG00000014832) #18	GJC2 (ENSCABG00000014839) #19	IBA57 (ENSCABG00000014842) #20	ENSCABG00000014846	ENSCABG00000014848 ##22	ENSCABG00000014851 #22	ENSCABG00000014855 ##22	ENSCABG00000014858 ##22	ENSCABG00000014859 #22	ENSCABG00000014861	ENSCABG00000014867	ENSCABG00000014869	ENSCABG00000014871	ENSCABG00000014876	ELAC2 (ENSCABG00000014881)	MYOCD (ENSCABG00000014911)	MAP2K4 (ENSCABG00000014914)	TMEM220 (ENSCABG00000015041)	ADPRM (ENSCABG00000015043)	SCO1 (ENSCABG00000015044)
Testudinoidea	ANCESTRAL SPECIES																	ENSGT00940000154756.A.ce.b ##22
Testudinidae	ANCESTRAL SPECIES																	ENSGT00940000154756.A.ce.b ##22
Abingdon island giant tortoise	MODERN SPECIES	163							ARF1 (ENSCABG00000014823) #15	C1orf35 (ENSCABG00000014826) #16	ENSCABG00000014828 #17	GUK1 (ENSCABG00000014832) #18	GJC2 (ENSCABG00000014839) #19	IBA57 (ENSCABG00000014842) #20	ENSCABG00000014846	ENSCABG00000014848 ##22	ENSCABG00000014851 #22	ENSCABG00000014855 ##22	ENSCABG00000014858 ##22	ENSCABG00000014859 #22	ENSCABG00000014861	ENSCABG00000014867	ENSCABG00000014869	ENSCABG00000014871	ENSCABG00000014876	ELAC2 (ENSCABG00000014881)	MYOCD (ENSCABG00000014911)	MAP2K4 (ENSCABG00000014914)	TMEM220 (ENSCABG00000015041)	ADPRM (ENSCABG00000015043)	SCO1 (ENSCABG00000015044)