Amniota ANCESTRAL SPECIES 167 ENSGT00940000177473 ENSGT00940000154756.A #22 ENSGT00940000154756.B ##22 ENSGT00940000167421 Sauria ANCESTRAL SPECIES 15 ENSGT00390000011619 ENSGT00940000158574 ENSGT01030000234570.d.b.a.b.b.b ENSGT00940000164845 ENSGT00940000161305 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00940000165232 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000153709.B #23 ENSGT01020000230359.E ENSGT00940000154276 ENSGT00390000000596 #27 ENSGT00530000063629.b #28 ENSGT00940000156360 #29 ENSGT00940000160089 #30 ENSGT00940000173926 ENSGT00940000158548 #31 ENSGT00940000159338 #33 ENSGT00940000156402.B #34 ENSGT00940000166678 #35 ENSGT00940000157362 #36 ENSGT00940000159858 ENSGT00940000157015 Lepidosauria ANCESTRAL SPECIES 5 ENSGT00940000164845 ENSGT00940000161305 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00940000165232 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000166913 ENSGT00940000177473 ENSGT00940000154756.B ##22 ENSGT00940000154756.A #22 ENSGT00940000153709.B #23 ENSGT01020000230359.E ENSGT00940000154276 ENSGT00390000000596 #27 ENSGT00530000063629.b #28 ENSGT00940000156360 #29 ENSGT00940000160089 #30 ENSGT00940000173926 ENSGT00940000158548 #31 ENSGT00940000159338 #33 ENSGT00940000156402.B #34 ENSGT00940000166678 #35 ENSGT00940000157362 #36 ENSGT00940000159858 ENSGT00940000157015 Episquamata ANCESTRAL SPECIES 67 ENSGT00940000177473 ENSGT00940000154756.B ##22 ENSGT00940000154756.A #22 ENSGT00940000153709.B.i #23 ENSGT00940000153709.B.j ##23 Toxicofera ANCESTRAL SPECIES 4 ENSGT00940000158454 ENSGT00390000011619 ENSGT00940000158574 ENSGT01030000234570.d.b.a.b.b.b ENSGT00940000164845 ENSGT00940000161305 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00940000165232 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000153709.B.i #23 ENSGT00940000153709.B.j ##23 ENSGT00390000000596 #27 ENSGT00530000063629.b #28 ENSGT00940000156360 #29 ENSGT00940000160089 #30 ENSGT00940000173926 ENSGT00940000158548 #31 ENSGT00940000159338 #33 ENSGT00940000156402.B #34 ENSGT00940000166678 #35 ENSGT00940000157362 #36 ENSGT00940000159858 ENSGT00940000157015 ENSGT00940000159600 Lizard MODERN SPECIES 5 CRYGN (ENSACAG00000002251) #7 WDR86 (ENSACAG00000002245) #8 ENSACAG00000036256 #9 NUB1 (ENSACAG00000012076) #10 ENSACAG00000034573 #11 ENSACAG00000012183 #12 WNT3A (ENSACAG00000040979) #13 ARF1 (ENSACAG00000006923) #14 C1orf35 (ENSACAG00000006899) #15 ENSACAG00000040651 #16 ENSACAG00000006897 #17 GUK1 (ENSACAG00000006879) #18 GJC2 (ENSACAG00000006876) #19 IBA57 (ENSACAG00000006874) #20 ENSACAG00000006871 #21 OBSCN (ENSACAG00000006816) #22 ENSACAG00000038024 #23 ENSACAG00000039408 #24 ENSACAG00000038888 #25 ENSACAG00000043949 #26 ENSACAG00000006787 #27 HHATL (ENSACAG00000006760) #28 ENSACAG00000006735 #29 ZBTB47 (ENSACAG00000006705) #30 ENSACAG00000006683 #31 ENSACAG00000035754 #32 SEC22C (ENSACAG00000006664) #33 VIPR1 (ENSACAG00000006506) #34 ENSACAG00000006375 #35 ADCYAP1R1 (ENSACAG00000006137) #36 ENSACAG00000042375 #37 Elapidae DUPLICATION Elapidae DUPLICATION Elapidae ANCESTRAL SPECIES 24 ENSGT00390000018786 ENSGT00940000158454 ENSGT00390000011619 ENSGT00940000158574 ENSGT01030000234570.d.b.a.b.b.b ENSGT00940000164845 ENSGT00940000161305 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00950000183080.a.b.a.b.a.a ##14 ENSGT00390000005590 #15 ENSGT00940000165232 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A.md.a #22 ENSGT00940000154756.A.md.b #22 ENSGT00940000168428 ENSGT00940000177473 ENSGT00940000154756.B ##22 ENSGT00940000154756.A.nd #22 ENSGT00940000153709.B.i #23 ENSGT00940000153709.B.j ##23 ENSGT00390000000596 #27 ENSGT00530000063629.b #28 ENSGT00940000156360 #29 ENSGT00940000160089 #30 ENSGT00940000173926 ENSGT00940000158548 #31 ENSGT00940000159338 #33 ENSGT00940000156402.B #34 Indian cobra DUPLICATION Indian cobra DUPLICATION Indian cobra MODERN SPECIES 337 ENSNNAG00000008332 ENSNNAG00000008353 NBEAL2 (ENSNNAG00000008452) MYL3 (ENSNNAG00000008789) JMJD4 (ENSNNAG00000008825) SNAP47 (ENSNNAG00000008865) ENSNNAG00000008905 ARF1 (ENSNNAG00000008988) ##14 C1orf35 (ENSNNAG00000009012) #15 ENSNNAG00000009060 GUK1 (ENSNNAG00000009097) #18 GJC2 (ENSNNAG00000009149) #19 IBA57 (ENSNNAG00000009159) #20 ENSNNAG00000009177 ENSNNAG00000009207 #22 ENSNNAG00000009220 #22 ENSNNAG00000009254 #22 ENSNNAG00000009270 #22 ENSNNAG00000009296 ##22 ENSNNAG00000009323 #22 ENSNNAG00000009366 #23 ENSNNAG00000009388 #23 ENSNNAG00000009402 ##23 CCDC13 (ENSNNAG00000009418) #27 KLHL40 (ENSNNAG00000009511) #29 ZBTB47 (ENSNNAG00000009670) #30 NKTR (ENSNNAG00000009715) #31 ENSNNAG00000009782 #33 ADCYAP1R1 (ENSNNAG00000009822) #36 ENSNNAG00000010002 ENSNNAG00000010020 Indian cobra MODERN SPECIES 337 ENSNNAG00000008302 ENSNNAG00000008332 ENSNNAG00000008353 NBEAL2 (ENSNNAG00000008452) MYL3 (ENSNNAG00000008789) JMJD4 (ENSNNAG00000008825) SNAP47 (ENSNNAG00000008865) ENSNNAG00000008905 ARF1 (ENSNNAG00000008988) ##14 C1orf35 (ENSNNAG00000009012) #15 ENSNNAG00000009060 GUK1 (ENSNNAG00000009097) #18 GJC2 (ENSNNAG00000009149) #19 IBA57 (ENSNNAG00000009159) #20 ENSNNAG00000009177 ENSNNAG00000009207 #22 ENSNNAG00000009220 #22 ENSNNAG00000009254 #22 ENSNNAG00000009270 #22 ENSNNAG00000009296 ##22 ENSNNAG00000009323 #22 ENSNNAG00000009366 #23 ENSNNAG00000009388 #23 ENSNNAG00000009402 ##23 CCDC13 (ENSNNAG00000009418) #27 KLHL40 (ENSNNAG00000009511) #29 ZBTB47 (ENSNNAG00000009670) #30 NKTR (ENSNNAG00000009715) #31 ENSNNAG00000009782 #33 ADCYAP1R1 (ENSNNAG00000009822) #36 ENSNNAG00000010002 Indian cobra MODERN SPECIES 337 ENSNNAG00000008353 NBEAL2 (ENSNNAG00000008452) MYL3 (ENSNNAG00000008789) JMJD4 (ENSNNAG00000008825) SNAP47 (ENSNNAG00000008865) ENSNNAG00000008905 ARF1 (ENSNNAG00000008988) ##14 C1orf35 (ENSNNAG00000009012) #15 ENSNNAG00000009060 GUK1 (ENSNNAG00000009097) #18 GJC2 (ENSNNAG00000009149) #19 IBA57 (ENSNNAG00000009159) #20 ENSNNAG00000009177 ENSNNAG00000009207 #22 ENSNNAG00000009220 #22 ENSNNAG00000009254 #22 ENSNNAG00000009270 #22 ENSNNAG00000009296 ##22 ENSNNAG00000009323 #22 ENSNNAG00000009366 #23 ENSNNAG00000009388 #23 ENSNNAG00000009402 ##23 CCDC13 (ENSNNAG00000009418) #27 KLHL40 (ENSNNAG00000009511) #29 ZBTB47 (ENSNNAG00000009670) #30 NKTR (ENSNNAG00000009715) #31 ENSNNAG00000009782 #33 ADCYAP1R1 (ENSNNAG00000009822) #36 ENSNNAG00000010002 ENSNNAG00000010020 ENSNNAG00000010038 Elapidae_a ANCESTRAL SPECIES 91 ENSGT00390000018786 ENSGT00940000158454 ENSGT00390000011619 ENSGT00940000158574 ENSGT01030000234570.d.b.a.b.b.b ENSGT00940000164845 ENSGT00940000161305 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00950000183080.a.b.a.b.a.a ##14 ENSGT00390000005590 #15 ENSGT00940000165232 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A.md.a #22 ENSGT00940000154756.A.md.b #22 ENSGT00940000168428 ENSGT00940000154756.A.nd #22 ENSGT00940000153709.B.i #23 ENSGT00940000153709.B.j ##23 ENSGT00390000000596 #27 ENSGT00530000063629.b #28 ENSGT00940000156360 #29 ENSGT00940000160089 #30 ENSGT00940000173926 ENSGT00940000158548 #31 ENSGT00940000159338 #33 ENSGT00940000156402.B #34 ENSGT00940000157362 #36 ENSGT00940000159858 Acanthophiinae ANCESTRAL SPECIES 183 ENSGT00940000154756.A.md.a #22 ENSGT00940000154756.A.md.b #22 ENSGT00940000168428 ENSGT00940000177473 ENSGT00940000154756.B ##22 Eastern brown snake DUPLICATION Eastern brown snake DUPLICATION Eastern brown snake MODERN SPECIES 134 WNT9A (ENSPTXG00000009631) ENSPTXG00000009636 ENSPTXG00000009637 ##14 C1orf35 (ENSPTXG00000009638) #15 ENSPTXG00000009639 GUK1 (ENSPTXG00000009640) #18 GJC2 (ENSPTXG00000009641) #19 IBA57 (ENSPTXG00000009642) #20 ENSPTXG00000009643 #22 ENSPTXG00000009645 #22 ENSPTXG00000009646 #22 ENSPTXG00000009647 #22 ENSPTXG00000009648 ENSPTXG00000009649 ##22 ENSPTXG00000009650 ENSPTXG00000009651 #22 ENSPTXG00000009652 #22 ENSPTXG00000009653 ENSPTXG00000009654 #23 ENSPTXG00000009655 ##23 CCDC13 (ENSPTXG00000009656) #27 HHATL (ENSPTXG00000009658) #28 KLHL40 (ENSPTXG00000009660) #29 ZBTB47 (ENSPTXG00000009663) #30 Eastern brown snake MODERN SPECIES 134 WNT9A (ENSPTXG00000009631) ENSPTXG00000009636 ENSPTXG00000009637 ##14 C1orf35 (ENSPTXG00000009638) #15 ENSPTXG00000009639 GUK1 (ENSPTXG00000009640) #18 GJC2 (ENSPTXG00000009641) #19 IBA57 (ENSPTXG00000009642) #20 ENSPTXG00000009643 #22 ENSPTXG00000009645 #22 ENSPTXG00000009646 #22 ENSPTXG00000009647 #22 ENSPTXG00000009648 ENSPTXG00000009649 ##22 ENSPTXG00000009650 ENSPTXG00000009651 #22 ENSPTXG00000009652 #22 ENSPTXG00000009653 ENSPTXG00000009654 #23 ENSPTXG00000009655 ##23 CCDC13 (ENSPTXG00000009656) #27 HHATL (ENSPTXG00000009658) #28 KLHL40 (ENSPTXG00000009660) #29 ZBTB47 (ENSPTXG00000009663) #30 ENSPTXG00000009665 ENSPTXG00000009668 #31 Eastern brown snake MODERN SPECIES 134 WNT9A (ENSPTXG00000009631) ENSPTXG00000009636 ENSPTXG00000009637 ##14 C1orf35 (ENSPTXG00000009638) #15 ENSPTXG00000009639 GUK1 (ENSPTXG00000009640) #18 GJC2 (ENSPTXG00000009641) #19 IBA57 (ENSPTXG00000009642) #20 ENSPTXG00000009643 #22 ENSPTXG00000009645 #22 ENSPTXG00000009646 #22 ENSPTXG00000009647 #22 ENSPTXG00000009648 ENSPTXG00000009649 ##22 ENSPTXG00000009650 ENSPTXG00000009651 #22 ENSPTXG00000009652 #22 ENSPTXG00000009653 ENSPTXG00000009654 #23 ENSPTXG00000009655 ##23 CCDC13 (ENSPTXG00000009656) #27 HHATL (ENSPTXG00000009658) #28 KLHL40 (ENSPTXG00000009660) #29 ZBTB47 (ENSPTXG00000009663) #30 ENSPTXG00000009665 Blue-lipped sea krait MODERN SPECIES 10889 ENSLLTG00000013320 #22 ENSLLTG00000013342 #22 Elapidae ANCESTRAL SPECIES 24 ENSGT00940000158454 ENSGT00390000011619 ENSGT00940000158574 ENSGT01030000234570.d.b.a.b.b.b ENSGT00940000164845 ENSGT00940000161305 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00950000183080.a.b.a.b.a.a ##14 ENSGT00390000005590 #15 ENSGT00940000165232 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A.md.a #22 ENSGT00940000154756.A.md.b #22 ENSGT00940000168428 ENSGT00940000177473 ENSGT00940000154756.B ##22 ENSGT00940000154756.A.nd #22 ENSGT00940000153709.B.i #23 ENSGT00940000153709.B.j ##23 ENSGT00390000000596 #27 ENSGT00530000063629.b #28 ENSGT00940000156360 #29 ENSGT00940000160089 #30 ENSGT00940000173926 ENSGT00940000158548 #31 ENSGT00940000159338 #33 ENSGT00940000156402.B #34 ENSGT00940000157362 #36 Elapidae_a ANCESTRAL SPECIES 91 ENSGT00940000158454 ENSGT00390000011619 ENSGT00940000158574 ENSGT01030000234570.d.b.a.b.b.b ENSGT00940000164845 ENSGT00940000161305 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00950000183080.a.b.a.b.a.a ##14 ENSGT00390000005590 #15 ENSGT00940000165232 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A.md.a #22 ENSGT00940000154756.A.md.b #22 ENSGT00940000168428 ENSGT00940000154756.A.nd #22 ENSGT00940000153709.B.i #23 ENSGT00940000153709.B.j ##23 ENSGT00390000000596 #27 ENSGT00530000063629.b #28 ENSGT00940000156360 #29 ENSGT00940000160089 #30 ENSGT00940000173926 ENSGT00940000158548 #31 ENSGT00940000159338 #33 ENSGT00940000156402.B #34 ENSGT00940000157362 #36 ENSGT00940000159858 ENSGT00940000157015 Acanthophiinae ANCESTRAL SPECIES 183 ENSGT00940000154756.A.md.a #22 ENSGT00940000154756.A.md.b #22 ENSGT00940000168428 ENSGT00940000177473 ENSGT00940000154756.B ##22 Mainland tiger snake DUPLICATION Mainland tiger snake MODERN SPECIES 188 JMJD4 (ENSNSUG00000014701) SNAP47 (ENSNSUG00000014700) ENSNSUG00000014699 ENSNSUG00000014698 ##14 C1orf35 (ENSNSUG00000014697) #15 ENSNSUG00000014696 GJC2 (ENSNSUG00000014695) #19 IBA57 (ENSNSUG00000014694) #20 ENSNSUG00000014693 ENSNSUG00000014692 #22 ENSNSUG00000014691 #22 ENSNSUG00000014689 ENSNSUG00000014688 #23 ENSNSUG00000014687 ##23 ENSNSUG00000014686 #27 HHATL (ENSNSUG00000014684) #28 KLHL40 (ENSNSUG00000014683) #29 ENSNSUG00000014682 #30 ENSNSUG00000014681 #30 ENSNSUG00000014678 ENSNSUG00000014677 #31 ENSNSUG00000014675 SEC22C (ENSNSUG00000014668) #33 VIPR1 (ENSNSUG00000014666) #34 ADCYAP1R1 (ENSNSUG00000014665) #36 Mainland tiger snake MODERN SPECIES 188 JMJD4 (ENSNSUG00000014701) SNAP47 (ENSNSUG00000014700) ENSNSUG00000014699 ENSNSUG00000014698 ##14 C1orf35 (ENSNSUG00000014697) #15 ENSNSUG00000014696 GJC2 (ENSNSUG00000014695) #19 IBA57 (ENSNSUG00000014694) #20 ENSNSUG00000014693 ENSNSUG00000014692 #22 ENSNSUG00000014691 #22 ENSNSUG00000014689 ENSNSUG00000014688 #23 ENSNSUG00000014687 ##23 ENSNSUG00000014686 #27 HHATL (ENSNSUG00000014684) #28 KLHL40 (ENSNSUG00000014683) #29 ENSNSUG00000014682 #30 ENSNSUG00000014681 #30 ENSNSUG00000014678 ENSNSUG00000014677 #31 ENSNSUG00000014675 SEC22C (ENSNSUG00000014668) #33 VIPR1 (ENSNSUG00000014666) #34 ADCYAP1R1 (ENSNSUG00000014665) #36 Eastern brown snake MODERN SPECIES 134 WNT9A (ENSPTXG00000009631) ENSPTXG00000009636 ENSPTXG00000009637 ##14 C1orf35 (ENSPTXG00000009638) #15 ENSPTXG00000009639 GUK1 (ENSPTXG00000009640) #18 GJC2 (ENSPTXG00000009641) #19 IBA57 (ENSPTXG00000009642) #20 ENSPTXG00000009643 #22 ENSPTXG00000009645 #22 ENSPTXG00000009646 #22 ENSPTXG00000009647 #22 ENSPTXG00000009648 ENSPTXG00000009649 ##22 ENSPTXG00000009650 ENSPTXG00000009651 #22 ENSPTXG00000009652 #22 ENSPTXG00000009653 ENSPTXG00000009654 #23 ENSPTXG00000009655 ##23 CCDC13 (ENSPTXG00000009656) #27 HHATL (ENSPTXG00000009658) #28 KLHL40 (ENSPTXG00000009660) #29 ZBTB47 (ENSPTXG00000009663) #30 ENSPTXG00000009665 ENSPTXG00000009668 #31 SEC22C (ENSPTXG00000009669) #33 Blue-lipped sea krait MODERN SPECIES 10889 ENSLLTG00000013320 #22 ENSLLTG00000013342 #22 Indian cobra MODERN SPECIES 337 NBEAL2 (ENSNNAG00000008452) MYL3 (ENSNNAG00000008789) JMJD4 (ENSNNAG00000008825) SNAP47 (ENSNNAG00000008865) ENSNNAG00000008905 ARF1 (ENSNNAG00000008988) ##14 C1orf35 (ENSNNAG00000009012) #15 ENSNNAG00000009060 GUK1 (ENSNNAG00000009097) #18 GJC2 (ENSNNAG00000009149) #19 IBA57 (ENSNNAG00000009159) #20 ENSNNAG00000009177 ENSNNAG00000009207 #22 ENSNNAG00000009220 #22 ENSNNAG00000009254 #22 ENSNNAG00000009270 #22 ENSNNAG00000009296 ##22 ENSNNAG00000009323 #22 ENSNNAG00000009366 #23 ENSNNAG00000009388 #23 ENSNNAG00000009402 ##23 CCDC13 (ENSNNAG00000009418) #27 KLHL40 (ENSNNAG00000009511) #29 ZBTB47 (ENSNNAG00000009670) #30 NKTR (ENSNNAG00000009715) #31 ENSNNAG00000009782 #33 ADCYAP1R1 (ENSNNAG00000009822) #36 ENSNNAG00000010002 ENSNNAG00000010020 ENSNNAG00000010038 ENSNNAG00000010072 Elapidae ANCESTRAL SPECIES 24 ENSGT00940000164845 ENSGT00940000161305 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00950000183080.a.b.a.b.a.a ##14 ENSGT00390000005590 #15 ENSGT00940000165232 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A.md.a #22 ENSGT00940000154756.A.md.b #22 ENSGT00940000168428 ENSGT00940000177473 ENSGT00940000154756.B ##22 ENSGT00940000154756.A.nd #22 ENSGT00940000153709.B.i #23 ENSGT00940000153709.B.j ##23 ENSGT00390000000596 #27 ENSGT00530000063629.b #28 ENSGT00940000156360 #29 ENSGT00940000160089 #30 ENSGT00940000173926 ENSGT00940000158548 #31 ENSGT00940000159338 #33 ENSGT00940000156402.B #34 ENSGT00940000157362 #36 ENSGT00940000159858 ENSGT00940000157015 ENSGT00940000156795 ENSGT00940000161688.h.b Indian cobra MODERN SPECIES 337 JMJD4 (ENSNNAG00000008825) SNAP47 (ENSNNAG00000008865) ENSNNAG00000008905 ARF1 (ENSNNAG00000008988) ##14 C1orf35 (ENSNNAG00000009012) #15 ENSNNAG00000009060 GUK1 (ENSNNAG00000009097) #18 GJC2 (ENSNNAG00000009149) #19 IBA57 (ENSNNAG00000009159) #20 ENSNNAG00000009177 ENSNNAG00000009207 #22 ENSNNAG00000009220 #22 ENSNNAG00000009254 #22 ENSNNAG00000009270 #22 ENSNNAG00000009296 ##22 ENSNNAG00000009323 #22 ENSNNAG00000009366 #23 ENSNNAG00000009388 #23 ENSNNAG00000009402 ##23 CCDC13 (ENSNNAG00000009418) #27 KLHL40 (ENSNNAG00000009511) #29 ZBTB47 (ENSNNAG00000009670) #30 NKTR (ENSNNAG00000009715) #31 ENSNNAG00000009782 #33 ADCYAP1R1 (ENSNNAG00000009822) #36 ENSNNAG00000010002 ENSNNAG00000010020 ENSNNAG00000010038 ENSNNAG00000010072 ENSNNAG00000010092 CTDSPL (ENSNNAG00000010153) Elapidae_a ANCESTRAL SPECIES 91 ENSGT00940000158574 ENSGT01030000234570.d.b.a.b.b.b ENSGT00940000164845 ENSGT00940000161305 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00950000183080.a.b.a.b.a.a ##14 ENSGT00390000005590 #15 ENSGT00940000165232 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A.md.a #22 ENSGT00940000154756.A.md.b #22 ENSGT00940000168428 ENSGT00940000154756.A.nd #22 ENSGT00940000153709.B.i #23 ENSGT00940000153709.B.j ##23 ENSGT00390000000596 #27 ENSGT00530000063629.b #28 ENSGT00940000156360 #29 ENSGT00940000160089 #30 ENSGT00940000173926 ENSGT00940000158548 #31 ENSGT00940000159338 #33 ENSGT00940000156402.B #34 ENSGT00940000157362 #36 ENSGT00940000159858 ENSGT00940000157015 Blue-lipped sea krait MODERN SPECIES 3558 ENSLLTG00000001359 #22 Acanthophiinae ANCESTRAL SPECIES 95 ENSGT00940000158454 ENSGT00390000011619 ENSGT00940000158574 ENSGT01030000234570.d.b.a.b.b.b ENSGT00940000164845 ENSGT00940000161305 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00950000183080.a.b.a.b.a.a ##14 ENSGT00390000005590 #15 ENSGT00940000165232 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000174795 ENSGT00940000154756.A.nd #22 ENSGT00940000153709.B.i #23 ENSGT00940000153709.B.j ##23 ENSGT00390000000596 #27 ENSGT00530000063629.b #28 ENSGT00940000156360 #29 ENSGT00940000160089 #30 ENSGT00940000173926 ENSGT00940000158548 #31 ENSGT00940000159338 #33 ENSGT00940000156402.B #34 ENSGT00940000157362 #36 ENSGT00940000159858 ENSGT00940000157015 Eastern brown snake DUPLICATION Eastern brown snake MODERN SPECIES 134 WNT9A (ENSPTXG00000009631) ENSPTXG00000009636 ENSPTXG00000009637 ##14 C1orf35 (ENSPTXG00000009638) #15 ENSPTXG00000009639 GUK1 (ENSPTXG00000009640) #18 GJC2 (ENSPTXG00000009641) #19 IBA57 (ENSPTXG00000009642) #20 ENSPTXG00000009643 #22 ENSPTXG00000009645 #22 ENSPTXG00000009646 #22 ENSPTXG00000009647 #22 ENSPTXG00000009648 ENSPTXG00000009649 ##22 ENSPTXG00000009650 ENSPTXG00000009651 #22 ENSPTXG00000009652 #22 ENSPTXG00000009653 ENSPTXG00000009654 #23 ENSPTXG00000009655 ##23 CCDC13 (ENSPTXG00000009656) #27 HHATL (ENSPTXG00000009658) #28 KLHL40 (ENSPTXG00000009660) #29 ZBTB47 (ENSPTXG00000009663) #30 ENSPTXG00000009665 ENSPTXG00000009668 #31 SEC22C (ENSPTXG00000009669) #33 VIPR1 (ENSPTXG00000009671) #34 ADCYAP1R1 (ENSPTXG00000009678) #36 GHRHR (ENSPTXG00000009814) AQP1 (ENSPTXG00000009815) Eastern brown snake MODERN SPECIES 134 ENSPTXG00000009636 ENSPTXG00000009637 ##14 C1orf35 (ENSPTXG00000009638) #15 ENSPTXG00000009639 GUK1 (ENSPTXG00000009640) #18 GJC2 (ENSPTXG00000009641) #19 IBA57 (ENSPTXG00000009642) #20 ENSPTXG00000009643 #22 ENSPTXG00000009645 #22 ENSPTXG00000009646 #22 ENSPTXG00000009647 #22 ENSPTXG00000009648 ENSPTXG00000009649 ##22 ENSPTXG00000009650 ENSPTXG00000009651 #22 ENSPTXG00000009652 #22 ENSPTXG00000009653 ENSPTXG00000009654 #23 ENSPTXG00000009655 ##23 CCDC13 (ENSPTXG00000009656) #27 HHATL (ENSPTXG00000009658) #28 KLHL40 (ENSPTXG00000009660) #29 ZBTB47 (ENSPTXG00000009663) #30 ENSPTXG00000009665 ENSPTXG00000009668 #31 SEC22C (ENSPTXG00000009669) #33 VIPR1 (ENSPTXG00000009671) #34 ADCYAP1R1 (ENSPTXG00000009678) #36 GHRHR (ENSPTXG00000009814) AQP1 (ENSPTXG00000009815) Laterata ANCESTRAL SPECIES 10 ENSGT00940000158574 ENSGT01030000234570.d.b.a.b.b.b ENSGT00940000164845 ENSGT00940000161305 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00940000165232 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000166913 ENSGT00940000154756.A #22 ENSGT00940000153709.B.i #23 ENSGT00940000153709.B.j ##23 ENSGT00940000154276 ENSGT00390000000596 #27 ENSGT00530000063629.b #28 ENSGT00940000156360 #29 ENSGT00940000160089 #30 ENSGT00940000158548 #31 ENSGT00940000159338 #33 ENSGT00940000156402.B #34 ENSGT00940000166678 #35 ENSGT00940000157362 #36 ENSGT00940000159858 ENSGT00940000157015 ENSGT00940000159600 Argentine black and white tegu MODERN SPECIES 5 JMJD4 (ENSSMRG00000016957) SNAP47 (ENSSMRG00000016956) ENSSMRG00000016954 WNT9A (ENSSMRG00000016952) WNT3A (ENSSMRG00000016949) #13 ENSSMRG00000016936 ##14 C1orf35 (ENSSMRG00000016934) #15 KIAA1143 (ENSSMRG00000016933) KIF15 (ENSSMRG00000016931) TMEM42 (ENSSMRG00000016928) ENSSMRG00000016927 GUK1 (ENSSMRG00000016925) #18 GJC2 (ENSSMRG00000016916) #19 IBA57 (ENSSMRG00000016914) #20 ENSSMRG00000016912 OBSCN (ENSSMRG00000016892) #22 ENSSMRG00000016874 #23 ENSSMRG00000016872 ##23 ENSSMRG00000016871 ##23 HIGD1A (ENSSMRG00000016870) CCDC13 (ENSSMRG00000016861) #27 HHATL (ENSSMRG00000016857) #28 KLHL40 (ENSSMRG00000016855) #29 ZBTB47 (ENSSMRG00000016854) #30 ENSSMRG00000016851 #31 ENSSMRG00000016849 #31 SEC22C (ENSSMRG00000016845) #33 VIPR1 (ENSSMRG00000016842) #34 ENSSMRG00000016822 #35 ADCYAP1R1 (ENSSMRG00000016818) #36 ENSSMRG00000016814 Common wall lizard MODERN SPECIES 3 MYL3 (ENSPMRG00000017241) ENSPMRG00000017254 ALS2CL (ENSPMRG00000017261) JMJD4 (ENSPMRG00000017270) SNAP47 (ENSPMRG00000017275) WNT9A (ENSPMRG00000017281) WNT3A (ENSPMRG00000017286) #13 ARF1 (ENSPMRG00000017293) #14 C1orf35 (ENSPMRG00000017303) #15 ENSPMRG00000017319 GUK1 (ENSPMRG00000017329) #18 ENSPMRG00000017341 GJC2 (ENSPMRG00000017345) #19 IBA57 (ENSPMRG00000017347) #20 ENSPMRG00000017354 ENSPMRG00000017361 #22 ENSPMRG00000017370 ENSPMRG00000017824 #23 ENSPMRG00000017827 ##23 ENSPMRG00000017835 ##23 ENSPMRG00000017843 HHATL (ENSPMRG00000017849) #28 KLHL40 (ENSPMRG00000017856) #29 ENSPMRG00000017859 #30 ENSPMRG00000017866 #30 NKTR (ENSPMRG00000017873) #31 SEC22C (ENSPMRG00000017882) #33 VIPR1 (ENSPMRG00000017889) #34 ENSPMRG00000017897 ENSPMRG00000010142 #35 ADCYAP1R1 (ENSPMRG00000010148) #36 tuatara MODERN SPECIES 423 ENSSPUG00000000527 GJC2 (ENSSPUG00000000550) #19 IBA57 (ENSSPUG00000000563) #20 ENSSPUG00000000569 #21 OBSCN (ENSSPUG00000000581) #22 CYP8B1 (ENSSPUG00000000754) #23 ACKR2 (ENSSPUG00000000782) HIGD1A (ENSSPUG00000000788) CCDC13 (ENSSPUG00000000798) #27 HHATL (ENSSPUG00000000906) #28 KLHL40 (ENSSPUG00000001118) #29 ENSSPUG00000001186 ENSSPUG00000001197 #31 SEC22C (ENSSPUG00000001233) #33 VIPR1 (ENSSPUG00000001247) #34 ENSSPUG00000001315 #35 ADCYAP1R1 (ENSSPUG00000001377) #36 GHRHR (ENSSPUG00000001441) AQP1 (ENSSPUG00000001522) MINDY4 (ENSSPUG00000001569) Archelosauria ANCESTRAL SPECIES 121 ENSGT00940000177473 ENSGT00940000154756.A #22 ENSGT00940000154756.B ##22 ENSGT00940000167421 Archosauria ANCESTRAL SPECIES ENSGT00940000158574 ENSGT01030000234570.d.b.a.b.b.b ENSGT00940000164845 ENSGT00940000161305 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00940000165232 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000166913 ENSGT00940000154756.A #22 ENSGT00940000154756.B ##22 ENSGT00940000177473 ENSGT00940000153709.B #23 ENSGT01020000230359.E ENSGT00940000154276 ENSGT00390000000596 #27 ENSGT00530000063629.b #28 ENSGT00940000156360 #29 ENSGT00940000160089 #30 ENSGT00940000173926 ENSGT00940000158548 #31 ENSGT00940000159338 #33 ENSGT00940000156402.B #34 ENSGT00940000166678 #35 ENSGT00940000157362 #36 Australian saltwater crocodile DUPLICATION Australian saltwater crocodile DUPLICATION Australian saltwater crocodile DUPLICATION Australian saltwater crocodile DUPLICATION Australian saltwater crocodile MODERN SPECIES MYL3 (ENSCPRG00005002730) ENSCPRG00005002674 ALS2CL (ENSCPRG00005002624) JMJD4 (ENSCPRG00005002616) SNAP47 (ENSCPRG00005002614) ENSCPRG00005002586 WNT9A (ENSCPRG00005002553) WNT3A (ENSCPRG00005002546) #13 ARF1 (ENSCPRG00005002526) #14 C1orf35 (ENSCPRG00005002524) #15 ENSCPRG00005002519 GUK1 (ENSCPRG00005002512) #18 GJC2 (ENSCPRG00005002486) #19 IBA57 (ENSCPRG00005002483) #20 ENSCPRG00005002481 #21 ENSCPRG00005002479 #22 ENSCPRG00005002477 #22 ENSCPRG00005002473 #22 ENSCPRG00005002468 #22 ENSCPRG00005002464 #22 ENSCPRG00005002447 ##22 ENSCPRG00005002444 ##22 ENSCPRG00005002442 ##22 ENSCPRG00005002440 ENSCPRG00005002437 #22 CYP8B1 (ENSCPRG00005002434) #23 ACKR2 (ENSCPRG00005002433) HIGD1A (ENSCPRG00005002426) CCDC13 (ENSCPRG00005002423) #27 HHATL (ENSCPRG00005002410) #28 KLHL40 (ENSCPRG00005002406) #29 Australian saltwater crocodile MODERN SPECIES ALS2CL (ENSCPRG00005002624) JMJD4 (ENSCPRG00005002616) SNAP47 (ENSCPRG00005002614) ENSCPRG00005002586 WNT9A (ENSCPRG00005002553) WNT3A (ENSCPRG00005002546) #13 ARF1 (ENSCPRG00005002526) #14 C1orf35 (ENSCPRG00005002524) #15 ENSCPRG00005002519 GUK1 (ENSCPRG00005002512) #18 GJC2 (ENSCPRG00005002486) #19 IBA57 (ENSCPRG00005002483) #20 ENSCPRG00005002481 #21 ENSCPRG00005002479 #22 ENSCPRG00005002477 #22 ENSCPRG00005002473 #22 ENSCPRG00005002468 #22 ENSCPRG00005002464 #22 ENSCPRG00005002447 ##22 ENSCPRG00005002444 ##22 ENSCPRG00005002442 ##22 ENSCPRG00005002440 ENSCPRG00005002437 #22 CYP8B1 (ENSCPRG00005002434) #23 ACKR2 (ENSCPRG00005002433) HIGD1A (ENSCPRG00005002426) CCDC13 (ENSCPRG00005002423) #27 HHATL (ENSCPRG00005002410) #28 KLHL40 (ENSCPRG00005002406) #29 ZBTB47 (ENSCPRG00005002404) #30 NKTR (ENSCPRG00005002399) #31 Australian saltwater crocodile MODERN SPECIES ENSCPRG00005002674 ALS2CL (ENSCPRG00005002624) JMJD4 (ENSCPRG00005002616) SNAP47 (ENSCPRG00005002614) ENSCPRG00005002586 WNT9A (ENSCPRG00005002553) WNT3A (ENSCPRG00005002546) #13 ARF1 (ENSCPRG00005002526) #14 C1orf35 (ENSCPRG00005002524) #15 ENSCPRG00005002519 GUK1 (ENSCPRG00005002512) #18 GJC2 (ENSCPRG00005002486) #19 IBA57 (ENSCPRG00005002483) #20 ENSCPRG00005002481 #21 ENSCPRG00005002479 #22 ENSCPRG00005002477 #22 ENSCPRG00005002473 #22 ENSCPRG00005002468 #22 ENSCPRG00005002464 #22 ENSCPRG00005002447 ##22 ENSCPRG00005002444 ##22 ENSCPRG00005002442 ##22 ENSCPRG00005002440 ENSCPRG00005002437 #22 CYP8B1 (ENSCPRG00005002434) #23 ACKR2 (ENSCPRG00005002433) HIGD1A (ENSCPRG00005002426) CCDC13 (ENSCPRG00005002423) #27 HHATL (ENSCPRG00005002410) #28 KLHL40 (ENSCPRG00005002406) #29 ZBTB47 (ENSCPRG00005002404) #30 Australian saltwater crocodile MODERN SPECIES JMJD4 (ENSCPRG00005002616) SNAP47 (ENSCPRG00005002614) ENSCPRG00005002586 WNT9A (ENSCPRG00005002553) WNT3A (ENSCPRG00005002546) #13 ARF1 (ENSCPRG00005002526) #14 C1orf35 (ENSCPRG00005002524) #15 ENSCPRG00005002519 GUK1 (ENSCPRG00005002512) #18 GJC2 (ENSCPRG00005002486) #19 IBA57 (ENSCPRG00005002483) #20 ENSCPRG00005002481 #21 ENSCPRG00005002479 #22 ENSCPRG00005002477 #22 ENSCPRG00005002473 #22 ENSCPRG00005002468 #22 ENSCPRG00005002464 #22 ENSCPRG00005002447 ##22 ENSCPRG00005002444 ##22 ENSCPRG00005002442 ##22 ENSCPRG00005002440 ENSCPRG00005002437 #22 CYP8B1 (ENSCPRG00005002434) #23 ACKR2 (ENSCPRG00005002433) HIGD1A (ENSCPRG00005002426) CCDC13 (ENSCPRG00005002423) #27 HHATL (ENSCPRG00005002410) #28 KLHL40 (ENSCPRG00005002406) #29 ZBTB47 (ENSCPRG00005002404) #30 NKTR (ENSCPRG00005002399) #31 SEC22C (ENSCPRG00005002376) #33 Australian saltwater crocodile MODERN SPECIES SNAP47 (ENSCPRG00005002614) ENSCPRG00005002586 WNT9A (ENSCPRG00005002553) WNT3A (ENSCPRG00005002546) #13 ARF1 (ENSCPRG00005002526) #14 C1orf35 (ENSCPRG00005002524) #15 ENSCPRG00005002519 GUK1 (ENSCPRG00005002512) #18 GJC2 (ENSCPRG00005002486) #19 IBA57 (ENSCPRG00005002483) #20 ENSCPRG00005002481 #21 ENSCPRG00005002479 #22 ENSCPRG00005002477 #22 ENSCPRG00005002473 #22 ENSCPRG00005002468 #22 ENSCPRG00005002464 #22 ENSCPRG00005002447 ##22 ENSCPRG00005002444 ##22 ENSCPRG00005002442 ##22 ENSCPRG00005002440 ENSCPRG00005002437 #22 CYP8B1 (ENSCPRG00005002434) #23 ACKR2 (ENSCPRG00005002433) HIGD1A (ENSCPRG00005002426) CCDC13 (ENSCPRG00005002423) #27 HHATL (ENSCPRG00005002410) #28 KLHL40 (ENSCPRG00005002406) #29 ZBTB47 (ENSCPRG00005002404) #30 NKTR (ENSCPRG00005002399) #31 SEC22C (ENSCPRG00005002376) #33 VIPR1 (ENSCPRG00005002258) #34 Australian saltwater crocodile MODERN SPECIES C1orf35 (ENSCPRG00005002524) #15 ENSCPRG00005002519 GUK1 (ENSCPRG00005002512) #18 GJC2 (ENSCPRG00005002486) #19 IBA57 (ENSCPRG00005002483) #20 ENSCPRG00005002481 #21 ENSCPRG00005002479 #22 ENSCPRG00005002477 #22 ENSCPRG00005002473 #22 ENSCPRG00005002468 #22 ENSCPRG00005002464 #22 ENSCPRG00005002447 ##22 ENSCPRG00005002444 ##22 ENSCPRG00005002442 ##22 ENSCPRG00005002440 ENSCPRG00005002437 #22 CYP8B1 (ENSCPRG00005002434) #23 ACKR2 (ENSCPRG00005002433) HIGD1A (ENSCPRG00005002426) CCDC13 (ENSCPRG00005002423) #27 HHATL (ENSCPRG00005002410) #28 KLHL40 (ENSCPRG00005002406) #29 ZBTB47 (ENSCPRG00005002404) #30 NKTR (ENSCPRG00005002399) #31 SEC22C (ENSCPRG00005002376) #33 VIPR1 (ENSCPRG00005002258) #34 ENSCPRG00005002174 ENSCPRG00005002132 #35 ADCYAP1R1 (ENSCPRG00005002121) #36 GHRHR (ENSCPRG00005002020) AQP1 (ENSCPRG00005002003) Aves ANCESTRAL SPECIES 5 ENSGT01030000234570.d.b.a.b.b.b ENSGT00940000164845 ENSGT00940000161305 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00940000165232 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000166913 ENSGT00940000154756.B ##22 ENSGT00940000154756.A #22 ENSGT00940000153709.B #23 ENSGT01020000230359.E ENSGT00940000154276 ENSGT00390000000596 #27 ENSGT00530000063629.b #28 ENSGT00940000156360 #29 ENSGT00940000160089 #30 ENSGT00940000173926 ENSGT00940000158548 #31 ENSGT00940000159338 #33 ENSGT00940000156402.B #34 ENSGT00940000166678 #35 ENSGT00940000157362 #36 ENSGT00940000159858 ENSGT00940000157015 Neognathae ANCESTRAL SPECIES ENSGT01030000234570.d.b.a.b.b.b ENSGT00940000164845 ENSGT00940000161305 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00940000165232 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000166913 ENSGT00940000154756.B ##22 ENSGT00940000154756.A #22 ENSGT00940000153709.B #23 ENSGT01020000230359.E ENSGT00940000154276 ENSGT00390000000596 #27 ENSGT00530000063629.b #28 ENSGT00940000156360 #29 ENSGT00940000160089 #30 ENSGT00940000173926 ENSGT00940000158548 #31 ENSGT00940000159338 #33 ENSGT00940000156402.B #34 ENSGT00940000166678 #35 ENSGT00940000157362 #36 ENSGT00940000159858 ENSGT00940000157015 Neognathae_b ANCESTRAL SPECIES 9 ENSGT01030000234570.d.b.a.b.b.b ENSGT00940000164845 ENSGT00940000161305 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00940000165232 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000166913 ENSGT00940000154756.B ##22 ENSGT00940000154756.A #22 ENSGT00940000153709.B #23 ENSGT01020000230359.E ENSGT00940000154276 ENSGT00390000000596 #27 ENSGT00530000063629.b #28 ENSGT00940000156360 #29 ENSGT00940000160089 #30 ENSGT00940000173926 ENSGT00940000158548 #31 ENSGT00940000159338 #33 ENSGT00940000156402.B #34 ENSGT00940000166678 #35 ENSGT00940000157362 #36 ENSGT00940000159858 ENSGT00940000157015 Passeriformes ANCESTRAL SPECIES ENSGT00940000164845 ENSGT00940000161305 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000159618.h ENSGT00940000159618.g.a ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00940000165232 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000166913 ENSGT00940000154756.B ##22 ENSGT00940000154756.A #22 ENSGT00940000153709.B #23 ENSGT01020000230359.E ENSGT00940000154276 ENSGT00390000000596 #27 ENSGT00530000063629.b #28 ENSGT00940000156360 #29 ENSGT00940000160089 #30 ENSGT00940000173926 ENSGT00940000158548 #31 ENSGT00940000159338 #33 ENSGT00940000156402.B #34 ENSGT00940000166678 #35 ENSGT00940000157362 #36 ENSGT00940000159858 ENSGT00940000157015 Great tit MODERN SPECIES 11 ASB10 (ENSPMJG00000003911) H2BK1 (ENSPMJG00000003913) ABCF2 (ENSPMJG00000003914) CHPF2 (ENSPMJG00000003917) ENSPMJG00000003920 WNT9A (ENSPMJG00000003940) WNT3A (ENSPMJG00000003960) #13 ENSPMJG00000003967 ARF1 (ENSPMJG00000003968) #14 C1orf35 (ENSPMJG00000003973) #15 ENSPMJG00000003975 GUK1 (ENSPMJG00000003992) #18 GJC2 (ENSPMJG00000004002) #19 IBA57 (ENSPMJG00000004004) #20 ENSPMJG00000004007 #21 OBSCN (ENSPMJG00000004019) #22 CYP8B1 (ENSPMJG00000004221) #23 ACKR2 (ENSPMJG00000004227) HIGD1A (ENSPMJG00000004228) CCDC13 (ENSPMJG00000004231) #27 HHATL (ENSPMJG00000004245) #28 KLHL40 (ENSPMJG00000004248) #29 ZBTB47 (ENSPMJG00000004252) #30 NKTR (ENSPMJG00000004257) #31 SEC22C (ENSPMJG00000004290) #33 VIPR1 (ENSPMJG00000004302) #34 ENSPMJG00000004319 #35 ADCYAP1R1 (ENSPMJG00000004324) #36 GHRHR (ENSPMJG00000004336) AQP1 (ENSPMJG00000004342) MINDY4 (ENSPMJG00000004345) Passeriformes_d ANCESTRAL SPECIES ENSGT00940000164845 ENSGT00940000161305 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000159618.h ENSGT00940000159618.g.a ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00940000165232 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000166913 ENSGT00940000154756.B ##22 ENSGT00940000154756.A #22 ENSGT00940000153709.B #23 ENSGT01020000230359.E ENSGT00940000154276 ENSGT00390000000596 #27 ENSGT00530000063629.b #28 ENSGT00940000156360 #29 ENSGT00940000160089 #30 ENSGT00940000173926 ENSGT00940000158548 #31 ENSGT00940000159338 #33 ENSGT00940000156402.B #34 ENSGT00940000166678 #35 ENSGT00940000157362 #36 ENSGT00940000159858 ENSGT00940000157015 Flycatcher MODERN SPECIES 11 MYL3 (ENSFALG00000005210) ENSFALG00000025140 ALS2CL (ENSFALG00000001110) JMJD4 (ENSFALG00000001104) SNAP47 (ENSFALG00000001100) WNT9A (ENSFALG00000026631) WNT3A (ENSFALG00000001092) #13 ARF1 (ENSFALG00000026573) ##14 C1orf35 (ENSFALG00000027612) #15 ENSFALG00000001084 ENSFALG00000001082 GUK1 (ENSFALG00000001079) #18 GJC2 (ENSFALG00000014739) #19 IBA57 (ENSFALG00000023883) #20 ENSFALG00000001076 OBSCN (ENSFALG00000001046) #22 ENSFALG00000028775 ENSFALG00000014720 #23 ACKR2 (ENSFALG00000014706) HIGD1A (ENSFALG00000001030) ENSFALG00000029078 #27 HHATL (ENSFALG00000001013) #28 ENSFALG00000001007 #29 ENSFALG00000023109 ENSFALG00000001000 NKTR (ENSFALG00000000996) #31 SEC22C (ENSFALG00000028342) #33 VIPR1 (ENSFALG00000024420) #34 ENSFALG00000000919 #35 ADCYAP1R1 (ENSFALG00000000871) #36 GHRHR (ENSFALG00000000828) Passeriformes_g ANCESTRAL SPECIES 6 ENSGT00940000164845 ENSGT00940000161305 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000159618.h ENSGT00940000159618.g.a ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00940000165232 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000166913 ENSGT00940000154756.B ##22 ENSGT00940000154756.A #22 ENSGT00940000153709.B #23 ENSGT01020000230359.E ENSGT00940000154276 ENSGT00390000000596 #27 ENSGT00530000063629.b #28 ENSGT00940000156360 #29 ENSGT00940000160089 #30 ENSGT00940000173926 ENSGT00940000158548 #31 ENSGT00940000159338 #33 ENSGT00940000156402.B #34 ENSGT00940000166678 #35 ENSGT00940000157362 #36 ENSGT00940000159858 ENSGT00940000157015 Passeroidea ANCESTRAL SPECIES 175 ENSGT00940000154756.A #22 ENSGT00940000154756.B ##22 Zebra finch DUPLICATION Zebra finch MODERN SPECIES 12 ENSTGUG00000000210 ENSTGUG00000019396 ALS2CL (ENSTGUG00000000211) JMJD4 (ENSTGUG00000000219) SNAP47 (ENSTGUG00000000221) WNT9A (ENSTGUG00000026480) WNT3A (ENSTGUG00000023348) #13 ARF1 (ENSTGUG00000000233) #14 ENSTGUG00000021273 #15 ENSTGUG00000023071 GUK1 (ENSTGUG00000000236) #18 GJC2 (ENSTGUG00000000246) #19 ENSTGUG00000025629 IBA57 (ENSTGUG00000000247) #20 ENSTGUG00000022363 #21 ENSTGUG00000028042 #22 ENSTGUG00000027931 ##22 ENSTGUG00000020352 #22 ENSTGUG00000027535 ##22 CYP8B1 (ENSTGUG00000000254) #23 ACKR2 (ENSTGUG00000000256) HIGD1A (ENSTGUG00000019656) CCDC13 (ENSTGUG00000000260) #27 HHATL (ENSTGUG00000000261) #28 KLHL40 (ENSTGUG00000000266) #29 ZBTB47 (ENSTGUG00000000272) #30 NKTR (ENSTGUG00000000276) #31 SEC22C (ENSTGUG00000000283) #33 VIPR1 (ENSTGUG00000025240) #34 ENSTGUG00000000290 #35 ADCYAP1R1 (ENSTGUG00000000306) #36 Zebra finch MODERN SPECIES 12 ALS2CL (ENSTGUG00000000211) JMJD4 (ENSTGUG00000000219) SNAP47 (ENSTGUG00000000221) WNT9A (ENSTGUG00000026480) WNT3A (ENSTGUG00000023348) #13 ARF1 (ENSTGUG00000000233) #14 ENSTGUG00000021273 #15 ENSTGUG00000023071 GUK1 (ENSTGUG00000000236) #18 GJC2 (ENSTGUG00000000246) #19 ENSTGUG00000025629 IBA57 (ENSTGUG00000000247) #20 ENSTGUG00000022363 #21 ENSTGUG00000028042 #22 ENSTGUG00000027931 ##22 ENSTGUG00000020352 #22 ENSTGUG00000027535 ##22 CYP8B1 (ENSTGUG00000000254) #23 ACKR2 (ENSTGUG00000000256) HIGD1A (ENSTGUG00000019656) CCDC13 (ENSTGUG00000000260) #27 HHATL (ENSTGUG00000000261) #28 KLHL40 (ENSTGUG00000000266) #29 ZBTB47 (ENSTGUG00000000272) #30 NKTR (ENSTGUG00000000276) #31 SEC22C (ENSTGUG00000000283) #33 VIPR1 (ENSTGUG00000025240) #34 ENSTGUG00000000290 #35 ADCYAP1R1 (ENSTGUG00000000306) #36 GHRHR (ENSTGUG00000000332) AQP1 (ENSTGUG00000027326) Common canary DUPLICATION Common canary DUPLICATION Common canary MODERN SPECIES 5 ENSSCAG00000006038 ALS2CL (ENSSCAG00000006041) JMJD4 (ENSSCAG00000006051) SNAP47 (ENSSCAG00000006057) ENSSCAG00000006067 WNT3A (ENSSCAG00000006073) #13 ARF1 (ENSSCAG00000006081) #14 C1orf35 (ENSSCAG00000006089) #15 ENSSCAG00000006094 GUK1 (ENSSCAG00000006099) #18 ENSSCAG00000006103 ENSSCAG00000006107 GJC2 (ENSSCAG00000006108) #19 IBA57 (ENSSCAG00000006110) #20 ENSSCAG00000006113 #21 ENSSCAG00000006118 #22 ENSSCAG00000006120 #22 ENSSCAG00000006128 ##22 ENSSCAG00000006129 ##22 ENSSCAG00000006133 ##22 ENSSCAG00000006137 #22 ENSSCAG00000006143 #23 ENSSCAG00000006150 #23 ACKR2 (ENSSCAG00000006154) HIGD1A (ENSSCAG00000006158) ENSSCAG00000006162 #27 HHATL (ENSSCAG00000006167) #28 KLHL40 (ENSSCAG00000006171) #29 ZBTB47 (ENSSCAG00000006174) #30 ENSSCAG00000006177 NKTR (ENSSCAG00000006183) #31 Common canary MODERN SPECIES 5 ALS2CL (ENSSCAG00000006041) JMJD4 (ENSSCAG00000006051) SNAP47 (ENSSCAG00000006057) ENSSCAG00000006067 WNT3A (ENSSCAG00000006073) #13 ARF1 (ENSSCAG00000006081) #14 C1orf35 (ENSSCAG00000006089) #15 ENSSCAG00000006094 GUK1 (ENSSCAG00000006099) #18 ENSSCAG00000006103 ENSSCAG00000006107 GJC2 (ENSSCAG00000006108) #19 IBA57 (ENSSCAG00000006110) #20 ENSSCAG00000006113 #21 ENSSCAG00000006118 #22 ENSSCAG00000006120 #22 ENSSCAG00000006128 ##22 ENSSCAG00000006129 ##22 ENSSCAG00000006133 ##22 ENSSCAG00000006137 #22 ENSSCAG00000006143 #23 ENSSCAG00000006150 #23 ACKR2 (ENSSCAG00000006154) HIGD1A (ENSSCAG00000006158) ENSSCAG00000006162 #27 HHATL (ENSSCAG00000006167) #28 KLHL40 (ENSSCAG00000006171) #29 ZBTB47 (ENSSCAG00000006174) #30 ENSSCAG00000006177 NKTR (ENSSCAG00000006183) #31 SEC22C (ENSSCAG00000006192) #33 Common canary MODERN SPECIES 5 WNT3A (ENSSCAG00000006073) #13 ARF1 (ENSSCAG00000006081) #14 C1orf35 (ENSSCAG00000006089) #15 ENSSCAG00000006094 GUK1 (ENSSCAG00000006099) #18 ENSSCAG00000006103 ENSSCAG00000006107 GJC2 (ENSSCAG00000006108) #19 IBA57 (ENSSCAG00000006110) #20 ENSSCAG00000006113 #21 ENSSCAG00000006118 #22 ENSSCAG00000006120 #22 ENSSCAG00000006128 ##22 ENSSCAG00000006129 ##22 ENSSCAG00000006133 ##22 ENSSCAG00000006137 #22 ENSSCAG00000006143 #23 ENSSCAG00000006150 #23 ACKR2 (ENSSCAG00000006154) HIGD1A (ENSSCAG00000006158) ENSSCAG00000006162 #27 HHATL (ENSSCAG00000006167) #28 KLHL40 (ENSSCAG00000006171) #29 ZBTB47 (ENSSCAG00000006174) #30 ENSSCAG00000006177 NKTR (ENSSCAG00000006183) #31 SEC22C (ENSSCAG00000006192) #33 ENSSCAG00000006202 #34 ENSSCAG00000006210 #35 ADCYAP1R1 (ENSSCAG00000006221) #36 GHRHR (ENSSCAG00000006246) Medium ground finch DUPLICATION Medium ground finch MODERN SPECIES 177 WNT3A (ENSGFOG00000010955) #13 ARF1 (ENSGFOG00000010950) #14 C1orf35 (ENSGFOG00000010942) #15 ENSGFOG00000010938 GUK1 (ENSGFOG00000010932) #18 GJC2 (ENSGFOG00000010930) #19 IBA57 (ENSGFOG00000010927) #20 ENSGFOG00000010923 ENSGFOG00000010890 #22 ENSGFOG00000010884 #22 ENSGFOG00000010877 #22 ENSGFOG00000010871 #22 CYP8B1 (ENSGFOG00000010868) #23 ACKR2 (ENSGFOG00000010862) HIGD1A (ENSGFOG00000010858) CCDC13 (ENSGFOG00000010846) #27 HHATL (ENSGFOG00000010830) #28 KLHL40 (ENSGFOG00000010820) #29 ZBTB47 (ENSGFOG00000010814) #30 ENSGFOG00000010809 ENSGFOG00000010804 #31 SEC22C (ENSGFOG00000010796) #33 VIPR1 (ENSGFOG00000010579) #34 ENSGFOG00000010570 #35 Medium ground finch MODERN SPECIES 177 WNT3A (ENSGFOG00000010955) #13 ARF1 (ENSGFOG00000010950) #14 C1orf35 (ENSGFOG00000010942) #15 ENSGFOG00000010938 GUK1 (ENSGFOG00000010932) #18 GJC2 (ENSGFOG00000010930) #19 IBA57 (ENSGFOG00000010927) #20 ENSGFOG00000010923 ENSGFOG00000010890 #22 ENSGFOG00000010884 #22 ENSGFOG00000010877 #22 ENSGFOG00000010871 #22 CYP8B1 (ENSGFOG00000010868) #23 ACKR2 (ENSGFOG00000010862) HIGD1A (ENSGFOG00000010858) CCDC13 (ENSGFOG00000010846) #27 HHATL (ENSGFOG00000010830) #28 KLHL40 (ENSGFOG00000010820) #29 ZBTB47 (ENSGFOG00000010814) #30 ENSGFOG00000010809 ENSGFOG00000010804 #31 SEC22C (ENSGFOG00000010796) #33 VIPR1 (ENSGFOG00000010579) #34 ENSGFOG00000010570 #35 ADCYAP1R1 (ENSGFOG00000010452) #36 Medium ground finch DUPLICATION Medium ground finch MODERN SPECIES 177 WNT3A (ENSGFOG00000010955) #13 ARF1 (ENSGFOG00000010950) #14 C1orf35 (ENSGFOG00000010942) #15 ENSGFOG00000010938 GUK1 (ENSGFOG00000010932) #18 GJC2 (ENSGFOG00000010930) #19 IBA57 (ENSGFOG00000010927) #20 ENSGFOG00000010923 ENSGFOG00000010890 #22 ENSGFOG00000010884 #22 ENSGFOG00000010877 #22 ENSGFOG00000010871 #22 CYP8B1 (ENSGFOG00000010868) #23 ACKR2 (ENSGFOG00000010862) HIGD1A (ENSGFOG00000010858) CCDC13 (ENSGFOG00000010846) #27 HHATL (ENSGFOG00000010830) #28 KLHL40 (ENSGFOG00000010820) #29 ZBTB47 (ENSGFOG00000010814) #30 ENSGFOG00000010809 ENSGFOG00000010804 #31 SEC22C (ENSGFOG00000010796) #33 VIPR1 (ENSGFOG00000010579) #34 ENSGFOG00000010570 #35 ADCYAP1R1 (ENSGFOG00000010452) #36 Medium ground finch MODERN SPECIES 177 WNT3A (ENSGFOG00000010955) #13 ARF1 (ENSGFOG00000010950) #14 C1orf35 (ENSGFOG00000010942) #15 ENSGFOG00000010938 GUK1 (ENSGFOG00000010932) #18 GJC2 (ENSGFOG00000010930) #19 IBA57 (ENSGFOG00000010927) #20 ENSGFOG00000010923 ENSGFOG00000010890 #22 ENSGFOG00000010884 #22 ENSGFOG00000010877 #22 ENSGFOG00000010871 #22 CYP8B1 (ENSGFOG00000010868) #23 ACKR2 (ENSGFOG00000010862) HIGD1A (ENSGFOG00000010858) CCDC13 (ENSGFOG00000010846) #27 HHATL (ENSGFOG00000010830) #28 KLHL40 (ENSGFOG00000010820) #29 ZBTB47 (ENSGFOG00000010814) #30 ENSGFOG00000010809 ENSGFOG00000010804 #31 SEC22C (ENSGFOG00000010796) #33 VIPR1 (ENSGFOG00000010579) #34 ENSGFOG00000010570 #35 ADCYAP1R1 (ENSGFOG00000010452) #36 Neognathae_c ANCESTRAL SPECIES 12 ENSGT00940000158574 ENSGT01030000234570.d.b.a.b.b.b ENSGT00940000164845 ENSGT00940000161305 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00940000165232 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000168031 ENSGT00940000154756.A #22 ENSGT00940000153709.B #23 ENSGT01020000230359.E ENSGT00940000154276 ENSGT00390000000596 #27 ENSGT00530000063629.b #28 ENSGT00940000156360 #29 ENSGT00940000160089 #30 ENSGT00940000173926 ENSGT00940000158548 #31 ENSGT00940000159338 #33 ENSGT00940000156402.B #34 ENSGT00940000166678 #35 ENSGT00940000157362 #36 ENSGT00940000159858 ENSGT00940000157015 Golden eagle MODERN SPECIES 19 ENSACCG00020014254 MYL3 (ENSACCG00020014220) ENSACCG00020014178 ALS2CL (ENSACCG00020014088) JMJD4 (ENSACCG00020014040) SNAP47 (ENSACCG00020014024) WNT9A (ENSACCG00020014006) WNT3A (ENSACCG00020013989) #13 ARF1 (ENSACCG00020013970) #14 C1orf35 (ENSACCG00020013955) #15 ENSACCG00020013934 GUK1 (ENSACCG00020013918) #18 GJC2 (ENSACCG00020013898) #19 IBA57 (ENSACCG00020013879) #20 ENSACCG00020013855 OBSCN (ENSACCG00020013522) #22 CYP8B1 (ENSACCG00020013113) #23 ACKR2 (ENSACCG00020013098) HIGD1A (ENSACCG00020013074) CCDC13 (ENSACCG00020013054) #27 HHATL (ENSACCG00020013024) #28 KLHL40 (ENSACCG00020012966) #29 ZBTB47 (ENSACCG00020012943) #30 ENSACCG00020012929 ENSACCG00020012910 #31 SEC22C (ENSACCG00020012895) #33 VIPR1 (ENSACCG00020012826) #34 ENSACCG00020012748 #35 ADCYAP1R1 (ENSACCG00020012657) #36 GHRHR (ENSACCG00020012555) AQP1 (ENSACCG00020012492) Kakapo DUPLICATION Kakapo MODERN SPECIES MYL3 (ENSSHBG00005003389) ENSSHBG00005003404 ALS2CL (ENSSHBG00005003439) JMJD4 (ENSSHBG00005003484) SNAP47 (ENSSHBG00005003498) WNT9A (ENSSHBG00005003511) WNT3A (ENSSHBG00005003522) #13 ARF1 (ENSSHBG00005003540) #14 C1orf35 (ENSSHBG00005003549) #15 ENSSHBG00005003555 GUK1 (ENSSHBG00005003565) #18 GJC2 (ENSSHBG00005003575) #19 IBA57 (ENSSHBG00005003583) #20 ENSSHBG00005003593 #21 ENSSHBG00005003632 #22 ENSSHBG00005003697 #22 CYP8B1 (ENSSHBG00005003705) #23 ACKR2 (ENSSHBG00005003711) HIGD1A (ENSSHBG00005003716) CCDC13 (ENSSHBG00005003724) #27 HHATL (ENSSHBG00005003739) #28 KLHL40 (ENSSHBG00005003760) #29 ZBTB47 (ENSSHBG00005003771) #30 NKTR (ENSSHBG00005003779) #31 SEC22C (ENSSHBG00005003787) #33 VIPR1 (ENSSHBG00005003800) #34 ENSSHBG00005003818 #35 ADCYAP1R1 (ENSSHBG00005003844) #36 ENSSHBG00005003859 GHRHR (ENSSHBG00005003880) AQP1 (ENSSHBG00005003936) Kakapo MODERN SPECIES PTH1R (ENSSHBG00005003364) MYL3 (ENSSHBG00005003389) ENSSHBG00005003404 ALS2CL (ENSSHBG00005003439) JMJD4 (ENSSHBG00005003484) SNAP47 (ENSSHBG00005003498) WNT9A (ENSSHBG00005003511) WNT3A (ENSSHBG00005003522) #13 ARF1 (ENSSHBG00005003540) #14 C1orf35 (ENSSHBG00005003549) #15 ENSSHBG00005003555 GUK1 (ENSSHBG00005003565) #18 GJC2 (ENSSHBG00005003575) #19 IBA57 (ENSSHBG00005003583) #20 ENSSHBG00005003593 #21 ENSSHBG00005003632 #22 ENSSHBG00005003697 #22 CYP8B1 (ENSSHBG00005003705) #23 ACKR2 (ENSSHBG00005003711) HIGD1A (ENSSHBG00005003716) CCDC13 (ENSSHBG00005003724) #27 HHATL (ENSSHBG00005003739) #28 KLHL40 (ENSSHBG00005003760) #29 ZBTB47 (ENSSHBG00005003771) #30 NKTR (ENSSHBG00005003779) #31 SEC22C (ENSSHBG00005003787) #33 VIPR1 (ENSSHBG00005003800) #34 ENSSHBG00005003818 #35 ADCYAP1R1 (ENSSHBG00005003844) #36 ENSSHBG00005003859 GHRHR (ENSSHBG00005003880) Galloanserae ANCESTRAL SPECIES 157 ENSGT00940000154756.A #22 ENSGT00940000154756.B ##22 Anatidae ANCESTRAL SPECIES 216 ENSGT00940000154756.A #22 ENSGT00940000154756.B ##22 Duck DUPLICATION Duck MODERN SPECIES 10 SMARCC1 (ENSAPLG00000014937) DHX30 (ENSAPLG00000015682) ENSAPLG00000028437 ENSAPLG00000028085 CDC25A (ENSAPLG00000008300) WNT3A (ENSAPLG00000004673) #13 ARF1 (ENSAPLG00000022202) #14 C1orf35 (ENSAPLG00000004460) #15 ENSAPLG00000027242 GUK1 (ENSAPLG00000004222) #18 GJC2 (ENSAPLG00000000708) #19 ENSAPLG00000030118 #21 ENSAPLG00000020914 #22 ENSAPLG00000017812 #22 ENSAPLG00000026129 #22 ENSAPLG00000031005 #22 ENSAPLG00000024143 ENSAPLG00000019155 ##22 ACKR2 (ENSAPLG00000000705) CCDC13 (ENSAPLG00000013331) #27 HHATL (ENSAPLG00000013163) #28 NKTR (ENSAPLG00000012358) #31 KLHL40 (ENSAPLG00000012893) #29 ZBTB47 (ENSAPLG00000022037) #30 SEC22C (ENSAPLG00000012311) #33 ENSAPLG00000010054 #35 ADCYAP1R1 (ENSAPLG00000009120) #36 GHRHR (ENSAPLG00000011541) AQP1 (ENSAPLG00000011792) MINDY4 (ENSAPLG00000011415) CRHR2 (ENSAPLG00000011160) Duck DUPLICATION Duck DUPLICATION Duck MODERN SPECIES 10 SCAP (ENSAPLG00000014099) SMARCC1 (ENSAPLG00000014937) DHX30 (ENSAPLG00000015682) ENSAPLG00000028437 ENSAPLG00000028085 CDC25A (ENSAPLG00000008300) WNT3A (ENSAPLG00000004673) #13 ARF1 (ENSAPLG00000022202) #14 C1orf35 (ENSAPLG00000004460) #15 ENSAPLG00000027242 GUK1 (ENSAPLG00000004222) #18 GJC2 (ENSAPLG00000000708) #19 ENSAPLG00000030118 #21 ENSAPLG00000020914 #22 ENSAPLG00000017812 #22 ENSAPLG00000026129 #22 ENSAPLG00000031005 #22 ENSAPLG00000024143 ENSAPLG00000019155 ##22 ACKR2 (ENSAPLG00000000705) CCDC13 (ENSAPLG00000013331) #27 HHATL (ENSAPLG00000013163) #28 NKTR (ENSAPLG00000012358) #31 KLHL40 (ENSAPLG00000012893) #29 ZBTB47 (ENSAPLG00000022037) #30 SEC22C (ENSAPLG00000012311) #33 ENSAPLG00000010054 #35 ADCYAP1R1 (ENSAPLG00000009120) #36 GHRHR (ENSAPLG00000011541) AQP1 (ENSAPLG00000011792) MINDY4 (ENSAPLG00000011415) Duck MODERN SPECIES 10 ENSAPLG00000030207 ENSAPLG00000020733 SCAP (ENSAPLG00000014099) SMARCC1 (ENSAPLG00000014937) DHX30 (ENSAPLG00000015682) ENSAPLG00000028437 ENSAPLG00000028085 CDC25A (ENSAPLG00000008300) WNT3A (ENSAPLG00000004673) #13 ARF1 (ENSAPLG00000022202) #14 C1orf35 (ENSAPLG00000004460) #15 ENSAPLG00000027242 GUK1 (ENSAPLG00000004222) #18 GJC2 (ENSAPLG00000000708) #19 ENSAPLG00000030118 #21 ENSAPLG00000020914 #22 ENSAPLG00000017812 #22 ENSAPLG00000026129 #22 ENSAPLG00000031005 #22 ENSAPLG00000024143 ENSAPLG00000019155 ##22 ACKR2 (ENSAPLG00000000705) CCDC13 (ENSAPLG00000013331) #27 HHATL (ENSAPLG00000013163) #28 NKTR (ENSAPLG00000012358) #31 KLHL40 (ENSAPLG00000012893) #29 ZBTB47 (ENSAPLG00000022037) #30 SEC22C (ENSAPLG00000012311) #33 ENSAPLG00000010054 #35 ADCYAP1R1 (ENSAPLG00000009120) #36 GHRHR (ENSAPLG00000011541) Duck MODERN SPECIES 10 ENSAPLG00000020733 SCAP (ENSAPLG00000014099) SMARCC1 (ENSAPLG00000014937) DHX30 (ENSAPLG00000015682) ENSAPLG00000028437 ENSAPLG00000028085 CDC25A (ENSAPLG00000008300) WNT3A (ENSAPLG00000004673) #13 ARF1 (ENSAPLG00000022202) #14 C1orf35 (ENSAPLG00000004460) #15 ENSAPLG00000027242 GUK1 (ENSAPLG00000004222) #18 GJC2 (ENSAPLG00000000708) #19 ENSAPLG00000030118 #21 ENSAPLG00000020914 #22 ENSAPLG00000017812 #22 ENSAPLG00000026129 #22 ENSAPLG00000031005 #22 ENSAPLG00000024143 ENSAPLG00000019155 ##22 ACKR2 (ENSAPLG00000000705) CCDC13 (ENSAPLG00000013331) #27 HHATL (ENSAPLG00000013163) #28 NKTR (ENSAPLG00000012358) #31 KLHL40 (ENSAPLG00000012893) #29 ZBTB47 (ENSAPLG00000022037) #30 SEC22C (ENSAPLG00000012311) #33 ENSAPLG00000010054 #35 ADCYAP1R1 (ENSAPLG00000009120) #36 GHRHR (ENSAPLG00000011541) AQP1 (ENSAPLG00000011792) Phasianidae ANCESTRAL SPECIES 1 ENSGT00390000011619 ENSGT00940000158574 ENSGT01030000234570.d.b.a.b.b.b ENSGT00940000164845 ENSGT00940000161305 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00940000165232 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000153709.B #23 ENSGT01020000230359.E ENSGT00940000154276 ENSGT00390000000596 #27 ENSGT00530000063629.b #28 ENSGT00940000156360 #29 ENSGT00940000160089 #30 ENSGT00940000180074 ENSGT00940000158548 #31 ENSGT00940000159338 #33 ENSGT00940000156402.B #34 ENSGT00940000166678 #35 ENSGT00940000157362 #36 ENSGT00940000159858 ENSGT00940000157015 Phasianidae_b ANCESTRAL SPECIES 1 ENSGT00390000011619 ENSGT00940000158574 ENSGT01030000234570.d.b.a.b.b.b ENSGT00940000164845 ENSGT00940000161305 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00940000165232 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000153709.B #23 ENSGT01020000230359.E ENSGT00940000154276 ENSGT00390000000596 #27 ENSGT00530000063629.b #28 ENSGT00940000156360 #29 ENSGT00940000160089 #30 ENSGT00940000158548 #31 ENSGT00940000159338 #33 ENSGT00940000156402.B #34 ENSGT00940000166678 #35 ENSGT00940000157362 #36 ENSGT00940000159858 ENSGT00940000157015 ENSGT00940000159600 Chicken MODERN SPECIES 11 PTH2R (ENSGALG00010025577) MYL3 (ENSGALG00010025568) ENSGALG00010024916 ALS2CL (ENSGALG00010024904) JMJD4 (ENSGALG00010024874) SNAP47 (ENSGALG00010024865) WNT9A (ENSGALG00010026166) WNT3A (ENSGALG00010026141) #13 ARF1 (ENSGALG00010026097) #14 C2H1orf35 (ENSGALG00010026076) #15 ENSGALG00010026064 GUK1 (ENSGALG00010026040) #18 GJC2 (ENSGALG00010026011) #19 IBA57 (ENSGALG00010026030) #20 ENSGALG00010025962 #21 OBSCN (ENSGALG00010025849) #22 ACKR2 (ENSGALG00010027403) #23 HIGD1C (ENSGALG00010027707) ENSGALG00010027387 #27 HHATL (ENSGALG00010027384) #28 KLHL40 (ENSGALG00010027381) #29 ZBTB47 (ENSGALG00010027378) #30 NKTR (ENSGALG00010027374) #31 SEC22C (ENSGALG00010027367) #33 VIPR1 (ENSGALG00010027363) #34 GHRHR-LR (ENSGALG00010027357) #35 ADCYAP1R1 (ENSGALG00010027355) #36 GHRHR (ENSGALG00010027343) AQP1 (ENSGALG00010027337) MINDY4 (ENSGALG00010027329) ENSGALG00010027312 Turkey MODERN SPECIES 369 ENSMGAG00000020027 #22 Cryptodira ANCESTRAL SPECIES 55 ENSGT00940000166534 ENSGT00940000159417 ENSGT00940000154363.B ENSGT00950000182818.D ENSGT00390000018397 ENSGT00530000063282 ENSGT00940000155111 ENSGT00950000182860.a.a.a ENSGT00390000012062 ENSGT00470000042293.a.b ENSGT00950000183184.b ENSGT00940000160724 ENSGT00940000159523 ENSGT00940000161812 ENSGT00390000003267 #21 ENSGT00940000154756.A #22 ENSGT00940000166913 ENSGT00390000015009 ENSGT00530000063909.a ENSGT00940000159790 ENSGT01090000260005.a.a.a.b.a.a.b ##19 ENSGT00940000161778 ENSGT00940000155685 ENSGT00390000004038 ENSGT00530000063991.a ENSGT00940000159539.d ENSGT00940000161200 ENSGT00940000156913.a ENSGT00550000075038 ENSGT00390000017837.a ENSGT00940000156993 Testudinoidea DUPLICATION Testudinoidea DUPLICATION Testudinoidea DUPLICATION Testudinoidea ANCESTRAL SPECIES 46 ENSGT00940000166534 ENSGT00940000159417 ENSGT00940000154363.B ENSGT00950000182818.D ENSGT00390000018397 ENSGT00530000063282 ENSGT00940000155111 ENSGT00950000182860.a.a.a ENSGT00390000012062 ENSGT00470000042293.a.b ENSGT00950000183184.b ENSGT00940000160724 ENSGT00940000159523 ENSGT00940000161812 ENSGT00390000003267 #21 ENSGT00940000154756.A.ce.a.a #22 ENSGT00940000166913 ENSGT00390000015009 ENSGT00530000063909.a ENSGT00940000159790 ENSGT01090000260005.a.a.a.b.a.a.b ##19 ENSGT00940000161778 ENSGT00940000155685 ENSGT00390000004038 ENSGT00530000063991.a ENSGT00940000159539.d ENSGT00940000161200 ENSGT00940000156913.a ENSGT00550000075038 ENSGT00390000017837.a ENSGT00940000156993 Emydidae ANCESTRAL SPECIES 35 ENSGT00940000158574 ENSGT01030000234570.d.b.a.b.b.b ENSGT00940000164845 ENSGT00940000161305 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00940000165232 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00390000003267 #21 ENSGT00940000154756.A.ce.a.a #22 ENSGT00940000153709.B #23 ENSGT01020000230359.E ENSGT00940000154276 ENSGT00390000000596 #27 ENSGT00530000063629.b #28 ENSGT00940000156360 #29 ENSGT00940000160089 #30 ENSGT00940000173926 ENSGT00940000158548 #31 ENSGT00940000159338.c #33 ENSGT00940000156402.B #34 ENSGT00940000166678 #35 ENSGT00940000157362 #36 ENSGT00940000159858 ENSGT00940000157015 Three-toed box turtle DUPLICATION Three-toed box turtle DUPLICATION Three-toed box turtle MODERN SPECIES 48 MYL3 (ENSTMTG00000007625) ENSTMTG00000007651 ALS2CL (ENSTMTG00000007679) JMJD4 (ENSTMTG00000007818) SNAP47 (ENSTMTG00000007837) ENSTMTG00000007845 WNT9A (ENSTMTG00000007852) WNT3A (ENSTMTG00000007868) #13 ARF1 (ENSTMTG00000007905) #14 C1orf35 (ENSTMTG00000007919) #15 ENSTMTG00000007926 GUK1 (ENSTMTG00000007938) #18 GJC2 (ENSTMTG00000007955) #19 IBA57 (ENSTMTG00000007959) #20 ENSTMTG00000007970 #21 ENSTMTG00000008021 #22 ENSTMTG00000008161 #22 ENSTMTG00000008168 ENSTMTG00000008188 #22 ENSTMTG00000008223 HIGD1A (ENSTMTG00000008234) CCDC13 (ENSTMTG00000008247) #27 HHATL (ENSTMTG00000008279) #28 KLHL40 (ENSTMTG00000008321) #29 ZBTB47 (ENSTMTG00000008346) #30 ENSTMTG00000008368 ENSTMTG00000008384 NKTR (ENSTMTG00000008400) #31 SEC22C (ENSTMTG00000008427) #33 VIPR1 (ENSTMTG00000008453) #34 ENSTMTG00000008513 #35 Three-toed box turtle MODERN SPECIES 48 JMJD4 (ENSTMTG00000007818) SNAP47 (ENSTMTG00000007837) ENSTMTG00000007845 WNT9A (ENSTMTG00000007852) WNT3A (ENSTMTG00000007868) #13 ARF1 (ENSTMTG00000007905) #14 C1orf35 (ENSTMTG00000007919) #15 ENSTMTG00000007926 GUK1 (ENSTMTG00000007938) #18 GJC2 (ENSTMTG00000007955) #19 IBA57 (ENSTMTG00000007959) #20 ENSTMTG00000007970 #21 ENSTMTG00000008021 #22 ENSTMTG00000008161 #22 ENSTMTG00000008168 ENSTMTG00000008188 #22 ENSTMTG00000008223 HIGD1A (ENSTMTG00000008234) CCDC13 (ENSTMTG00000008247) #27 HHATL (ENSTMTG00000008279) #28 KLHL40 (ENSTMTG00000008321) #29 ZBTB47 (ENSTMTG00000008346) #30 ENSTMTG00000008368 ENSTMTG00000008384 NKTR (ENSTMTG00000008400) #31 SEC22C (ENSTMTG00000008427) #33 VIPR1 (ENSTMTG00000008453) #34 ENSTMTG00000008513 #35 ADCYAP1R1 (ENSTMTG00000008568) #36 GHRHR (ENSTMTG00000008727) ENSTMTG00000008764 Three-toed box turtle MODERN SPECIES 48 ENSTMTG00000007651 ALS2CL (ENSTMTG00000007679) JMJD4 (ENSTMTG00000007818) SNAP47 (ENSTMTG00000007837) ENSTMTG00000007845 WNT9A (ENSTMTG00000007852) WNT3A (ENSTMTG00000007868) #13 ARF1 (ENSTMTG00000007905) #14 C1orf35 (ENSTMTG00000007919) #15 ENSTMTG00000007926 GUK1 (ENSTMTG00000007938) #18 GJC2 (ENSTMTG00000007955) #19 IBA57 (ENSTMTG00000007959) #20 ENSTMTG00000007970 #21 ENSTMTG00000008021 #22 ENSTMTG00000008161 #22 ENSTMTG00000008168 ENSTMTG00000008188 #22 ENSTMTG00000008223 HIGD1A (ENSTMTG00000008234) CCDC13 (ENSTMTG00000008247) #27 HHATL (ENSTMTG00000008279) #28 KLHL40 (ENSTMTG00000008321) #29 ZBTB47 (ENSTMTG00000008346) #30 ENSTMTG00000008368 ENSTMTG00000008384 NKTR (ENSTMTG00000008400) #31 SEC22C (ENSTMTG00000008427) #33 VIPR1 (ENSTMTG00000008453) #34 ENSTMTG00000008513 #35 ADCYAP1R1 (ENSTMTG00000008568) #36 painted turtle MODERN SPECIES 749 MYL3 (ENSCPBG00000001514) ENSCPBG00000001521 ALS2CL (ENSCPBG00000001553) JMJD4 (ENSCPBG00000001622) SNAP47 (ENSCPBG00000001637) ENSCPBG00000001655 WNT9A (ENSCPBG00000001669) WNT3A (ENSCPBG00000001683) #13 ARF1 (ENSCPBG00000001732) #14 C1orf35 (ENSCPBG00000001754) #15 ENSCPBG00000001771 GUK1 (ENSCPBG00000001789) #18 GJC2 (ENSCPBG00000001821) #19 IBA57 (ENSCPBG00000001832) #20 ENSCPBG00000001843 #21 OBSCN (ENSCPBG00000002168) #22 CYP8B1 (ENSCPBG00000003980) #23 ACKR2 (ENSCPBG00000003986) HIGD1A (ENSCPBG00000003994) CCDC13 (ENSCPBG00000004012) #27 HHATL (ENSCPBG00000004042) #28 KLHL40 (ENSCPBG00000004071) #29 ZBTB47 (ENSCPBG00000004296) #30 ENSCPBG00000004311 ENSCPBG00000004337 #31 ENSCPBG00000004344 #33 ENSCPBG00000004348 #33 VIPR1 (ENSCPBG00000004358) #34 ENSCPBG00000004379 ENSCPBG00000004383 #35 ADCYAP1R1 (ENSCPBG00000004400) #36 Testudinidae ANCESTRAL SPECIES ENSGT00940000154756.A.ce.a.a #22 Abingdon island giant tortoise MODERN SPECIES 163 ARF1 (ENSCABG00000014823) #14 C1orf35 (ENSCABG00000014826) #15 ENSCABG00000014828 GUK1 (ENSCABG00000014832) #18 GJC2 (ENSCABG00000014839) #19 IBA57 (ENSCABG00000014842) #20 ENSCABG00000014846 ENSCABG00000014848 #22 ENSCABG00000014851 #22 ENSCABG00000014855 #22 ENSCABG00000014858 #22 ENSCABG00000014859 #22 ENSCABG00000014861 ENSCABG00000014867 ENSCABG00000014869 ENSCABG00000014871 ENSCABG00000014876 ELAC2 (ENSCABG00000014881) MYOCD (ENSCABG00000014911) MAP2K4 (ENSCABG00000014914) TMEM220 (ENSCABG00000015041) ADPRM (ENSCABG00000015043) SCO1 (ENSCABG00000015044) Testudinoidea ANCESTRAL SPECIES 8 ENSGT00390000011619 ENSGT00940000158574 ENSGT01030000234570.d.b.a.b.b.b ENSGT00940000164845 ENSGT00940000161305 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00940000165232 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A.ce.a.b #22 ENSGT00940000153709.B #23 ENSGT01020000230359.E ENSGT00940000154276 ENSGT00390000000596 #27 ENSGT00530000063629.b #28 ENSGT00940000156360 #29 ENSGT00940000160089 #30 ENSGT00940000173926 ENSGT00940000158548 #31 ENSGT00940000159338.c #33 ENSGT00940000156402.B #34 ENSGT00940000166678 #35 ENSGT00940000157362 #36 ENSGT00940000159858 ENSGT00940000157015 Testudinidae ANCESTRAL SPECIES 1 ENSGT00940000158574 ENSGT01030000234570.d.b.a.b.b.b ENSGT00940000164845 ENSGT00940000161305 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00940000165232 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00390000003267 #21 ENSGT00940000154756.A.ce.a.b #22 ENSGT00940000153709.B #23 ENSGT01020000230359.E ENSGT00940000154276 ENSGT00390000000596 #27 ENSGT00530000063629.b #28 ENSGT00940000156360 #29 ENSGT00940000160089 #30 ENSGT00940000158548 #31 ENSGT00940000159338.c #33 ENSGT00940000156402.B #34 ENSGT00940000166678 #35 ENSGT00940000157362 #36 ENSGT00940000159858 ENSGT00940000157015 ENSGT00940000159600 Abingdon island giant tortoise DUPLICATION Abingdon island giant tortoise MODERN SPECIES 163 ARF1 (ENSCABG00000014823) #14 C1orf35 (ENSCABG00000014826) #15 ENSCABG00000014828 GUK1 (ENSCABG00000014832) #18 GJC2 (ENSCABG00000014839) #19 IBA57 (ENSCABG00000014842) #20 ENSCABG00000014846 ENSCABG00000014848 #22 ENSCABG00000014851 #22 ENSCABG00000014855 #22 ENSCABG00000014858 #22 ENSCABG00000014859 #22 ENSCABG00000014861 ENSCABG00000014867 ENSCABG00000014869 ENSCABG00000014871 ENSCABG00000014876 ELAC2 (ENSCABG00000014881) MYOCD (ENSCABG00000014911) MAP2K4 (ENSCABG00000014914) TMEM220 (ENSCABG00000015041) ADPRM (ENSCABG00000015043) SCO1 (ENSCABG00000015044) Abingdon island giant tortoise MODERN SPECIES 163 ARF1 (ENSCABG00000014823) #14 C1orf35 (ENSCABG00000014826) #15 ENSCABG00000014828 GUK1 (ENSCABG00000014832) #18 GJC2 (ENSCABG00000014839) #19 IBA57 (ENSCABG00000014842) #20 ENSCABG00000014846 ENSCABG00000014848 #22 ENSCABG00000014851 #22 ENSCABG00000014855 #22 ENSCABG00000014858 #22 ENSCABG00000014859 #22 ENSCABG00000014861 ENSCABG00000014867 ENSCABG00000014869 ENSCABG00000014871 ENSCABG00000014876 ELAC2 (ENSCABG00000014881) MYOCD (ENSCABG00000014911) MAP2K4 (ENSCABG00000014914) TMEM220 (ENSCABG00000015041) ADPRM (ENSCABG00000015043) SCO1 (ENSCABG00000015044) Goode s thornscrub tortoise MODERN SPECIES 11 MYL3 (ENSGEVG00005011154) ENSGEVG00005011228 ALS2CL (ENSGEVG00005011324) JMJD4 (ENSGEVG00005011871) SNAP47 (ENSGEVG00005011922) ENSGEVG00005011986 WNT9A (ENSGEVG00005012041) WNT3A (ENSGEVG00005012137) #13 ARF1 (ENSGEVG00005012184) #14 C1orf35 (ENSGEVG00005012210) #15 ENSGEVG00005012238 GUK1 (ENSGEVG00005012265) #18 GJC2 (ENSGEVG00005012284) #19 IBA57 (ENSGEVG00005012316) #20 ENSGEVG00005012335 #21 OBSCN (ENSGEVG00005012558) #22 CYP8B1 (ENSGEVG00005014888) #23 ACKR2 (ENSGEVG00005014904) HIGD1A (ENSGEVG00005014926) CCDC13 (ENSGEVG00005014944) #27 HHATL (ENSGEVG00005014986) #28 KLHL40 (ENSGEVG00005015018) #29 ZBTB47 (ENSGEVG00005015102) #30 NKTR (ENSGEVG00005015149) #31 SEC22C (ENSGEVG00005015191) #33 VIPR1 (ENSGEVG00005015274) #34 ENSGEVG00005015453 ENSGEVG00005015484 #35 ADCYAP1R1 (ENSGEVG00005015612) #36 GHRHR (ENSGEVG00005015776) AQP1 (ENSGEVG00005015849) Emydidae ANCESTRAL SPECIES ENSGT00940000154756.A.ce.a.b #22 Three-toed box turtle DUPLICATION Three-toed box turtle MODERN SPECIES 2794 ENSTMTG00000019332 #22 Three-toed box turtle MODERN SPECIES 2750 ENSTMTG00000018694 #22 Testudinoidea ANCESTRAL SPECIES ENSGT00940000154756.A.ce.b #22 Testudinidae ANCESTRAL SPECIES ENSGT00940000154756.A.ce.b #22 Abingdon island giant tortoise MODERN SPECIES 163 ARF1 (ENSCABG00000014823) #14 C1orf35 (ENSCABG00000014826) #15 ENSCABG00000014828 GUK1 (ENSCABG00000014832) #18 GJC2 (ENSCABG00000014839) #19 IBA57 (ENSCABG00000014842) #20 ENSCABG00000014846 ENSCABG00000014848 #22 ENSCABG00000014851 #22 ENSCABG00000014855 #22 ENSCABG00000014858 #22 ENSCABG00000014859 #22 ENSCABG00000014861 ENSCABG00000014867 ENSCABG00000014869 ENSCABG00000014871 ENSCABG00000014876 ELAC2 (ENSCABG00000014881) MYOCD (ENSCABG00000014911) MAP2K4 (ENSCABG00000014914) TMEM220 (ENSCABG00000015041) ADPRM (ENSCABG00000015043) SCO1 (ENSCABG00000015044) Testudinoidea ANCESTRAL SPECIES ENSGT00940000154756.A.de #22 Testudinidae ANCESTRAL SPECIES 257 ENSGT00940000166913 ENSGT00940000154756.A.de #22 Abingdon island giant tortoise MODERN SPECIES 163 ARF1 (ENSCABG00000014823) #14 C1orf35 (ENSCABG00000014826) #15 ENSCABG00000014828 GUK1 (ENSCABG00000014832) #18 GJC2 (ENSCABG00000014839) #19 IBA57 (ENSCABG00000014842) #20 ENSCABG00000014846 ENSCABG00000014848 #22 ENSCABG00000014851 #22 ENSCABG00000014855 #22 ENSCABG00000014858 #22 ENSCABG00000014859 #22 ENSCABG00000014861 ENSCABG00000014867 ENSCABG00000014869 ENSCABG00000014871 ENSCABG00000014876 ELAC2 (ENSCABG00000014881) MYOCD (ENSCABG00000014911) MAP2K4 (ENSCABG00000014914) TMEM220 (ENSCABG00000015041) ADPRM (ENSCABG00000015043) SCO1 (ENSCABG00000015044) Mammalia ANCESTRAL SPECIES 12 ENSGT00940000160773 ENSGT00390000014069.b ENSGT00940000158253 ENSGT00940000161141 ENSGT00940000157423 ENSGT00940000158922 ENSGT00960000190528 ENSGT00940000156382 ENSGT00470000042293.a.b ENSGT00950000183184.b ENSGT00940000160724 ENSGT00940000159523 ENSGT00960000189914 ENSGT00940000161812 ENSGT00390000003267 #21 ENSGT00940000154756.A #22 ENSGT00940000154756.B ##22 ENSGT00940000166913 ENSGT00390000015009 ENSGT00530000063909.a ENSGT00940000159790 ENSGT01090000260005.a.a.a.b.a.a.b ##19 ENSGT00940000161778 ENSGT00940000155685 ENSGT00390000004038 ENSGT00530000063991.a ENSGT00940000159539 ENSGT00940000161200 ENSGT00940000162478 ENSGT00550000075038 ENSGT00390000017837.a Platypus MODERN SPECIES 4 ENSOANG00000004262 ENSOANG00000050324 CCDC12 (ENSOANG00000044446) PTH1R (ENSOANG00000039996) MYL3 (ENSOANG00000005484) ENSOANG00000046262 ENSOANG00000037642 ENSOANG00000042376 WNT9A (ENSOANG00000046921) ARF1 (ENSOANG00000048039) #14 ENSOANG00000038636 #15 ENSOANG00000046224 GUK1 (ENSOANG00000036937) #18 IBA57 (ENSOANG00000049649) #20 ENSOANG00000047271 #26 ENSOANG00000042737 #22 ENSOANG00000050228 #23 ENSOANG00000050342 HIGD1A (ENSOANG00000038143) HHATL (ENSOANG00000004353) #28 KLHL40 (ENSOANG00000037937) #29 ZBTB47 (ENSOANG00000010793) #30 ENSOANG00000008946 ENSOANG00000048058 #31 ENSOANG00000040878 #31 SEC22C (ENSOANG00000036395) #33 ENSOANG00000020679 #34 AQP1 (ENSOANG00000036888) ENSOANG00000043586 ADCYAP1R1 (ENSOANG00000006558) #36 INMT (ENSOANG00000047781) Theria ANCESTRAL SPECIES 9 ENSGT00940000160773 ENSGT00390000014069.b ENSGT00940000158253 ENSGT00940000161141 ENSGT00940000157423 ENSGT00940000158922 ENSGT00960000190528 ENSGT00940000156382 ENSGT00470000042293.a.b ENSGT00950000183184.b ENSGT00940000160724 ENSGT00940000159523 ENSGT00960000189914 ENSGT00940000161812 ENSGT00390000003267 #21 ENSGT00940000154756.A #22 ENSGT00940000154756.B ##22 ENSGT00940000166913 ENSGT00390000015009 ENSGT00530000063909.a ENSGT00940000159790 ENSGT01090000260005.a.a.a.b.a.a.b ##19 ENSGT00940000161778 ENSGT00940000155685 ENSGT00390000004038 ENSGT00530000063991.a ENSGT00940000159539 ENSGT00940000161200 ENSGT00940000162478 ENSGT00550000075038 ENSGT00390000017837.a Marsupialia ANCESTRAL SPECIES 13 ENSGT00940000160534 ENSGT00400000022305 ENSGT00940000160773 ENSGT00390000014069.b ENSGT00940000158253 ENSGT00940000161141 ENSGT00940000157423 ENSGT00940000158922 ENSGT00940000156382 ENSGT00470000042293.a.b ENSGT00950000183184.b ENSGT00940000160724 ENSGT00940000159523 ENSGT00940000161812 ENSGT00390000003267 #21 ENSGT00940000154756.A #22 ENSGT00940000154756.B ##22 ENSGT00940000166913 ENSGT00390000015009 ENSGT00530000063909.a ENSGT00940000159790 ENSGT01090000260005.a.a.a.b.a.a.b ##19 ENSGT00940000161778 ENSGT00940000155685 ENSGT00390000004038 ENSGT00530000063991.a ENSGT00940000159539 ENSGT00940000161200 ENSGT00940000162478 ENSGT00550000075038 ENSGT00390000017837.a Opossum MODERN SPECIES 5 ENSMODG00000013871 ALS2CL (ENSMODG00000013867) JMJD4 (ENSMODG00000013850) SNAP47 (ENSMODG00000013844) ENSMODG00000027354 ENSMODG00000013841 ENSMODG00000022963 WNT9A (ENSMODG00000013820) WNT3A (ENSMODG00000013810) #13 ENSMODG00000013804 MRPL55 (ENSMODG00000013793) ENSMODG00000013790 #18 GJC2 (ENSMODG00000013779) #19 IBA57 (ENSMODG00000051147) #20 ENSMODG00000027446 #21 OBSCN (ENSMODG00000013764) #22 ENSMODG00000028809 ENSMODG00000041391 ENSMODG00000013724 ENSMODG00000013677 ENSMODG00000013671 ENSMODG00000027869 ENSMODG00000038496 ENSMODG00000013644 ENSMODG00000028520 #23 ACKR2 (ENSMODG00000013607) CCDC13 (ENSMODG00000013599) #27 HHATL (ENSMODG00000013592) #28 KLHL40 (ENSMODG00000013585) #29 ZBTB47 (ENSMODG00000013582) #30 NKTR (ENSMODG00000013574) #31 Marsupialia_b ANCESTRAL SPECIES 16 ENSGT00940000160534 ENSGT00400000022305 ENSGT00940000160773 ENSGT00390000014069.b ENSGT00940000158253 ENSGT00940000161141 ENSGT00940000157423 ENSGT00940000158922 ENSGT00940000156382 ENSGT00470000042293.a.b ENSGT00950000183184.b ENSGT00940000160724 ENSGT00940000159523 ENSGT00940000161812 ENSGT00390000003267 #21 ENSGT00940000154756.A #22 ENSGT00940000154756.B ##22 ENSGT00940000166913 ENSGT00390000015009 ENSGT00530000063909.a ENSGT00940000159790 ENSGT01090000260005.a.a.a.b.a.a.b ##19 ENSGT00940000161778 ENSGT00940000155685 ENSGT00390000004038 ENSGT00530000063991.a ENSGT00940000159539 ENSGT00940000161200 ENSGT00940000162478 ENSGT00550000075038 ENSGT00390000017837.a Diprotodontia ANCESTRAL SPECIES 9 ENSGT00940000160534 ENSGT00400000022305 ENSGT00940000160773 ENSGT00390000014069.b ENSGT00940000158253 ENSGT00940000161141 ENSGT00940000157423 ENSGT00940000158922 ENSGT00940000156382 ENSGT00470000042293.a.b ENSGT00950000183184.b ENSGT00940000160724 ENSGT00940000159523 ENSGT00940000161812 ENSGT00390000003267 #21 ENSGT00940000154756.A #22 ENSGT00940000154756.B ##22 ENSGT00940000166913 ENSGT00390000015009 ENSGT00530000063909.a ENSGT00940000159790 ENSGT01090000260005.a.a.a.b.a.a.b ##19 ENSGT00940000161778 ENSGT00940000155685 ENSGT00390000004038 ENSGT00530000063991.a ENSGT00940000159539 ENSGT00940000161200 ENSGT00940000162478 ENSGT00550000075038 ENSGT00390000017837.a Wallaby MODERN SPECIES 6704 OBSCN (ENSMEUG00000007256) #22 ENSMEUG00000007434 Diprotodontia_a ANCESTRAL SPECIES 11 ENSGT00940000160534 ENSGT00400000022305 ENSGT00940000160773 ENSGT00390000014069.b ENSGT00940000158253 ENSGT00940000161141 ENSGT00940000157423 ENSGT00940000158922 ENSGT00940000156382 ENSGT00470000042293.a.b ENSGT00950000183184.b ENSGT00940000160724 ENSGT00940000159523 ENSGT00940000161812 ENSGT00390000003267 #21 ENSGT00940000154756.A #22 ENSGT00940000154756.B ##22 ENSGT00940000166913 ENSGT00390000015009 ENSGT00530000063909.a ENSGT00940000159790 ENSGT01090000260005.a.a.a.b.a.a.b ##19 ENSGT00940000161778 ENSGT00940000155685 ENSGT00390000004038 ENSGT00530000063991.a ENSGT00940000159539 ENSGT00940000161200 ENSGT00940000162478 ENSGT00550000075038 ENSGT00390000017837.a koala MODERN SPECIES 75 JMJD4 (ENSPCIG00000025913) SNAP47 (ENSPCIG00000025912) ENSPCIG00000001277 ENSPCIG00000001298 ENSPCIG00000031488 ENSPCIG00000027274 WNT9A (ENSPCIG00000030182) WNT3A (ENSPCIG00000021855) #13 ARF1 (ENSPCIG00000021851) #14 C1orf35 (ENSPCIG00000021849) #15 ENSPCIG00000021848 ENSPCIG00000021846 #18 GJC2 (ENSPCIG00000021844) #19 ENSPCIG00000021842 #20 ENSPCIG00000021839 #21 OBSCN (ENSPCIG00000021795) #22 ENSPCIG00000021838 ENSPCIG00000015990 ENSPCIG00000017091 ENSPCIG00000015992 ENSPCIG00000031791 ENSPCIG00000001531 ENSPCIG00000017089 ENSPCIG00000017087 ENSPCIG00000017084 ENSPCIG00000017083 ENSPCIG00000031674 #23 ACKR2 (ENSPCIG00000017081) ENSPCIG00000017079 CCDC13 (ENSPCIG00000017073) #27 HHATL (ENSPCIG00000017067) #28 Common wonbat DUPLICATION Common wonbat DUPLICATION Common wonbat MODERN SPECIES 1091 ALS2CL (ENSVURG00010011135) JMJD4 (ENSVURG00010011120) SNAP47 (ENSVURG00010011117) ENSVURG00010011097 ENSVURG00010011084 ENSVURG00010011076 WNT9A (ENSVURG00010011070) WNT3A (ENSVURG00010011060) #13 ARF1 (ENSVURG00010011047) #14 C1orf35 (ENSVURG00010011035) #15 ENSVURG00010011028 GUK1 (ENSVURG00010011021) #18 ENSVURG00010011010 #19 ENSVURG00010011004 #20 ENSVURG00010010994 #21 ENSVURG00010010975 #22 Common wonbat MODERN SPECIES 1056 ENSVURG00010013621 #12 NINJ1 (ENSVURG00010013614) WNK2 (ENSVURG00010013564) FAM120A (ENSVURG00010013533) PHF2 (ENSVURG00010013498) BARX1 (ENSVURG00010013478) PTPDC1 (ENSVURG00010013465) ENSVURG00010013425 WNT7A (ENSVURG00010013416) FBLN2 (ENSVURG00010013331) HDAC11 (ENSVURG00010013309) NUP210 (ENSVURG00010013289) ENSVURG00010013253 ENSVURG00010013211 ENSVURG00010013197 #21 ENSVURG00010013190 #22 Common wonbat MODERN SPECIES 1056 ENSVURG00010001383 #21 ENSVURG00010001359 #22 ENSVURG00010001333 ##22 ENSVURG00010001285 ENSVURG00010001274 ENSVURG00010001263 ENSVURG00010001241 ENSVURG00010001219 ENSVURG00010001200 ENSVURG00010001187 ENSVURG00010001146 ENSVURG00010001134 ENSVURG00010001131 ENSVURG00010001124 ENSVURG00010001114 ENSVURG00010001100 #23 ACKR2 (ENSVURG00010001092) Tasmanian devil MODERN SPECIES ENSSHAG00000008746 JMJD4 (ENSSHAG00000009023) SNAP47 (ENSSHAG00000009204) ENSSHAG00000029686 ENSSHAG00000023996 ENSSHAG00000023350 WNT9A (ENSSHAG00000012600) WNT3A (ENSSHAG00000023523) #13 ENSSHAG00000021122 #14 C1orf35 (ENSSHAG00000014645) #15 MRPL55 (ENSSHAG00000027608) GUK1 (ENSSHAG00000014798) #18 GJC2 (ENSSHAG00000022939) #19 IBA57 (ENSSHAG00000026953) #20 ENSSHAG00000015166 #21 ENSSHAG00000027621 #22 ENSSHAG00000001725 ENSSHAG00000001927 ENSSHAG00000031960 ENSSHAG00000005659 ENSSHAG00000001445 #23 ENSSHAG00000006552 ENSSHAG00000007146 ENSSHAG00000022645 #23 ENSSHAG00000024915 #23 ENSSHAG00000022961 #23 ENSSHAG00000030270 #23 ENSSHAG00000021704 ENSSHAG00000005111 CCDC13 (ENSSHAG00000020658) #27 KLHL40 (ENSSHAG00000007480) #29 Eutheria ANCESTRAL SPECIES 46 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00390000016274 Atlantogenata ANCESTRAL SPECIES 148 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000155138.f ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00390000016274 Afrotheria ANCESTRAL SPECIES 186 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000155138.f ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00390000016274 Tenrec MODERN SPECIES 4743 ENSETEG00000006375 #22 Afrotheria_a ANCESTRAL SPECIES 187 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000155138.f ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00390000016274 Elephant MODERN SPECIES 27 H3-4 (ENSLAFG00000031137) TRIM11 (ENSLAFG00000017039) ENSLAFG00000032186 JMJD4 (ENSLAFG00000022162) SNAP47 (ENSLAFG00000028954) PRSS38 (ENSLAFG00000005934) ENSLAFG00000031393 WNT9A (ENSLAFG00000017352) ENSLAFG00000031881 #13 ARF1 (ENSLAFG00000006987) #14 C1orf35 (ENSLAFG00000003007) #15 MRPL55 (ENSLAFG00000003008) GUK1 (ENSLAFG00000026666) #18 GJC2 (ENSLAFG00000010220) #19 IBA57 (ENSLAFG00000010222) #20 ENSLAFG00000022315 #22 ENSLAFG00000030495 PRMT2 (ENSLAFG00000009604) S100B (ENSLAFG00000014935) Hyrax MODERN SPECIES 4537 OBSCN (ENSPCAG00000005964) #22 ENSPCAG00000006677 Xenarthra ANCESTRAL SPECIES 596 ENSGT00940000155138.f ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 Armadillo DUPLICATION Armadillo MODERN SPECIES 904 ENSDNOG00000044665 #22 ENSDNOG00000040332 ENSDNOG00000049210 TRIM11 (ENSDNOG00000046467) TRIM17 (ENSDNOG00000001170) H3-4 (ENSDNOG00000047581) ENSDNOG00000041071 H2BC26 (ENSDNOG00000043947) ENSDNOG00000044676 ENSDNOG00000012828 ENSDNOG00000044824 ENSDNOG00000045637 NABP1 (ENSDNOG00000023585) Armadillo DUPLICATION Armadillo MODERN SPECIES 2365 ENSDNOG00000039640 ENSDNOG00000049106 ENSDNOG00000047752 WNT9A (ENSDNOG00000007791) WNT3A (ENSDNOG00000037172) #13 ENSDNOG00000049038 #14 C1orf35 (ENSDNOG00000040335) #15 MRPL55 (ENSDNOG00000024342) ENSDNOG00000023608 #20 ENSDNOG00000040893 #22 ENSDNOG00000035986 #22 Armadillo MODERN SPECIES 2365 ENSDNOG00000039640 ENSDNOG00000049106 ENSDNOG00000047752 WNT9A (ENSDNOG00000007791) WNT3A (ENSDNOG00000037172) #13 ENSDNOG00000049038 #14 C1orf35 (ENSDNOG00000040335) #15 MRPL55 (ENSDNOG00000024342) ENSDNOG00000023608 #20 ENSDNOG00000040893 #22 ENSDNOG00000035986 #22 Armadillo MODERN SPECIES 2121 ENSDNOG00000037026 #22 Boreoeutheria ANCESTRAL SPECIES 24 ENSGT01090000260044.A.b.a.a.a.b ENSGT01100000263548.b.a.a.a.a.a ENSGT00940000162415 ENSGT00940000161967 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000163997 Euarchontoglires ANCESTRAL SPECIES 25 ENSGT01090000260044.A.b.a.a.a.b ENSGT01100000263548.b.a.a.a.a.a ENSGT00940000162415 ENSGT00940000161967 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000163997 Primates ANCESTRAL SPECIES 30 ENSGT01090000260044.A.b.a.a.a.b ENSGT01100000263548.b.a.a.a.a.a ENSGT00940000162415 ENSGT00940000161967 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000163997 Strepsirrhini ANCESTRAL SPECIES 52 ENSGT00940000164205 ENSGT01100000263507.D.a.a.b.b.b.b.b ENSGT00940000153165.a.a.d.j ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000163997 Bushbaby MODERN SPECIES 400 ENSOGAG00000028076 ENSOGAG00000003566 JMJD4 (ENSOGAG00000004942) SNAP47 (ENSOGAG00000004945) PRSS38 (ENSOGAG00000026355) WNT9A (ENSOGAG00000013474) WNT3A (ENSOGAG00000013493) #13 ARF1 (ENSOGAG00000010974) #14 C1orf35 (ENSOGAG00000010978) #15 MRPL55 (ENSOGAG00000010981) GUK1 (ENSOGAG00000029450) #18 GJC2 (ENSOGAG00000033132) #19 IBA57 (ENSOGAG00000009178) #20 ENSOGAG00000030331 #22 TRIM11 (ENSOGAG00000009216) TRIM17 (ENSOGAG00000009217) H3-4 (ENSOGAG00000031879) H2AC25 (ENSOGAG00000009219) H2BC26 (ENSOGAG00000009221) ENSOGAG00000031086 RNF187 (ENSOGAG00000011214) ENSOGAG00000030822 Lemuriformes ANCESTRAL SPECIES 18 ENSGT00940000160555 ENSGT00530000063927.a.b ENSGT00940000157559 ENSGT00940000159259.b ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000163997 Lemuriformes_a ANCESTRAL SPECIES 88 ENSGT00940000160555 ENSGT00530000063927.a.b ENSGT00940000157559 ENSGT00940000159259.b ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000163997 Greater bamboo lemur DUPLICATION Greater bamboo lemur MODERN SPECIES 769 ENSPSMG00000013201 #13 ARF1 (ENSPSMG00000013226) #14 C1orf35 (ENSPSMG00000013245) #15 MRPL55 (ENSPSMG00000013256) GUK1 (ENSPSMG00000013269) #18 GJC2 (ENSPSMG00000013273) #19 IBA57 (ENSPSMG00000013279) #20 ENSPSMG00000013283 #22 ENSPSMG00000013289 #22 TRIM11 (ENSPSMG00000013308) TRIM17 (ENSPSMG00000013322) ENSPSMG00000013327 ENSPSMG00000013337 H2BC26 (ENSPSMG00000013352) ENSPSMG00000013365 Greater bamboo lemur MODERN SPECIES 769 ENSPSMG00000013201 #13 ARF1 (ENSPSMG00000013226) #14 C1orf35 (ENSPSMG00000013245) #15 MRPL55 (ENSPSMG00000013256) GUK1 (ENSPSMG00000013269) #18 GJC2 (ENSPSMG00000013273) #19 IBA57 (ENSPSMG00000013279) #20 ENSPSMG00000013283 #22 ENSPSMG00000013289 #22 TRIM11 (ENSPSMG00000013308) TRIM17 (ENSPSMG00000013322) ENSPSMG00000013327 ENSPSMG00000013337 H2BC26 (ENSPSMG00000013352) ENSPSMG00000013365 Coquerels sifaka MODERN SPECIES 234 PARP4 (ENSPCOG00000022852) CENPJ (ENSPCOG00000016218) RNF17 (ENSPCOG00000020211) ATP12A (ENSPCOG00000025271) ENSPCOG00000024700 JMJD4 (ENSPCOG00000019446) SNAP47 (ENSPCOG00000012484) PRSS38 (ENSPCOG00000019582) WNT9A (ENSPCOG00000015468) WNT3A (ENSPCOG00000024931) #13 ARF1 (ENSPCOG00000026770) #14 C1orf35 (ENSPCOG00000025028) #15 MRPL55 (ENSPCOG00000013827) GUK1 (ENSPCOG00000009766) #18 IBA57 (ENSPCOG00000028589) #20 OBSCN (ENSPCOG00000028285) #22 TRIM11 (ENSPCOG00000016532) TRIM17 (ENSPCOG00000026287) H3-4 (ENSPCOG00000026493) H2AC25 (ENSPCOG00000013826) H2BC26 (ENSPCOG00000003934) ENSPCOG00000005164 RNF187 (ENSPCOG00000002810) ENSPCOG00000024361 ENSPCOG00000026534 Mouse lemur MODERN SPECIES 4 PARP4 (ENSMICG00000028028) CENPJ (ENSMICG00000010400) RNF17 (ENSMICG00000010364) ATP12A (ENSMICG00000007697) ENSMICG00000042765 JMJD4 (ENSMICG00000036474) SNAP47 (ENSMICG00000029011) PRSS38 (ENSMICG00000042943) WNT9A (ENSMICG00000047095) WNT3A (ENSMICG00000010671) #13 ARF1 (ENSMICG00000047362) #14 C1orf35 (ENSMICG00000027688) #15 MRPL55 (ENSMICG00000031760) GUK1 (ENSMICG00000003322) #18 IBA57 (ENSMICG00000041871) #20 OBSCN (ENSMICG00000000557) #22 TRIM11 (ENSMICG00000029090) TRIM17 (ENSMICG00000013315) H3-4 (ENSMICG00000045112) H2AC25 (ENSMICG00000044054) H2BC26 (ENSMICG00000041996) ENSMICG00000048090 ENSMICG00000038421 ENSMICG00000046509 ENSMICG00000045969 ENSMICG00000026371 ENSMICG00000026956 ENSMICG00000047302 MCF2L (ENSMICG00000033069) F7 (ENSMICG00000032148) F10 (ENSMICG00000028391) Haplorrhini ANCESTRAL SPECIES 46 ENSGT01090000260044.A.b.a.a.a.b ENSGT00940000162415 ENSGT00940000161967 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00390000016274 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000163997 Tarsier MODERN SPECIES 5065 ZNF669 (ENSTSYG00000003204) ENSTSYG00000034800 ENSTSYG00000002726 ENSTSYG00000028507 JMJD4 (ENSTSYG00000000484) SNAP47 (ENSTSYG00000034505) PRSS38 (ENSTSYG00000011299) WNT9A (ENSTSYG00000025543) WNT3A (ENSTSYG00000027346) #13 ARF1 (ENSTSYG00000027538) #14 CUNH1orf35 (ENSTSYG00000031003) #15 MRPL55 (ENSTSYG00000002932) GUK1 (ENSTSYG00000001325) #18 IBA57 (ENSTSYG00000014591) #20 ENSTSYG00000006833 OBSCN (ENSTSYG00000031392) #22 TRIM11 (ENSTSYG00000029832) TRIM17 (ENSTSYG00000008473) H3-4 (ENSTSYG00000037257) H2AC25 (ENSTSYG00000026130) H2BC26 (ENSTSYG00000029005) ENSTSYG00000036415 Simiiformes ANCESTRAL SPECIES 33 ENSGT00940000162415 ENSGT00940000161967 ENSGT00910000148176 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00390000016274 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000163997 Catarrhini ANCESTRAL SPECIES 10 ENSGT00910000148176 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00860000136121 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00390000017697.a.n ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00390000016274 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000163997 Cercopithecidae ANCESTRAL SPECIES 20 ENSGT00940000153165.a.a.d.i.a ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00860000136121 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00390000017697.a.n ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00390000016274 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 Cercopithecinae ANCESTRAL SPECIES 18 ENSGT01090000260030.b ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00860000136121 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00390000017697.a.n ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00390000016274 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 Vervet Monkey MODERN SPECIES 17 COQ8A (ENSCSAG00000016382) CDC42BPA (ENSCSAG00000016402) ENSCSAG00000016411 JMJD4 (ENSCSAG00000016420) SNAP47 (ENSCSAG00000016423) PRSS38 (ENSCSAG00000016434) WNT9A (ENSCSAG00000016440) WNT3A (ENSCSAG00000016455) #13 ARF1 (ENSCSAG00000016460) #14 C1orf35 (ENSCSAG00000016465) #15 MRPL55 (ENSCSAG00000016477) GUK1 (ENSCSAG00000016494) #18 GJC2 (ENSCSAG00000000269) #19 IBA57 (ENSCSAG00000016503) #20 ENSCSAG00000000270 OBSCN (ENSCSAG00000016528) #22 TRIM11 (ENSCSAG00000016542) TRIM17 (ENSCSAG00000016546) H2AC25 (ENSCSAG00000000271) H2BC26 (ENSCSAG00000000272) ENSCSAG00000000273 RNF187 (ENSCSAG00000016553) Cercopithecinae_a DUPLICATION Cercopithecinae_a ANCESTRAL SPECIES ENSGT00940000154756.A.uc #22 Cercopithecinae_b ANCESTRAL SPECIES ENSGT00940000154756.A.uc #22 Cercopithecinae_d ANCESTRAL SPECIES ENSGT00940000154756.A.uc #22 Sooty mangabey MODERN SPECIES 269 SNAP47 (ENSCATG00000017110) ENSCATG00000032383 PRSS38 (ENSCATG00000028007) WNT9A (ENSCATG00000037437) WNT3A (ENSCATG00000024249) #13 ENSCATG00000026444 ENSCATG00000034162 #14 C1orf35 (ENSCATG00000036828) #15 MRPL55 (ENSCATG00000001114) ENSCATG00000030372 #18 GJC2 (ENSCATG00000043427) #19 IBA57 (ENSCATG00000033547) #20 ENSCATG00000033121 ENSCATG00000015518 #22 ENSCATG00000018563 ENSCATG00000028342 #22 TRIM11 (ENSCATG00000037992) TRIM17 (ENSCATG00000004723) H3-4 (ENSCATG00000015110) H2AC25 (ENSCATG00000019930) H2BC26 (ENSCATG00000043414) ENSCATG00000016310 ENSCATG00000036222 Cercopithecinae_a ANCESTRAL SPECIES ENSGT00940000159380 ENSGT00950000182843.b ENSGT00910000148086 ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00860000136121 ENSGT00950000183080.a.b.a.b.b.`b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00390000017697.a.n ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00390000016274 ENSGT00940000154756.A.vc #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00390000013340 ENSGT00550000076417 ENSGT00940000154842.a.b ENSGT00940000153464.A.b.a ENSGT00940000157769 ENSGT00940000168189 ENSGT00940000163577 ENSGT00510000046975.b.t Macaca ANCESTRAL SPECIES ENSGT00940000159380 ENSGT00950000182843.b ENSGT00910000148086 ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00860000136121 ENSGT00950000183080.a.b.a.b.b.`b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00390000017697.a.n ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00390000016274 ENSGT00940000154756.A.vc #22 ENSGT00440000034918.q.a.a.a.d.l.a.b ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00390000013340 ENSGT00940000154842.a.b ENSGT00940000153464.A.b.a ENSGT00940000157769 ENSGT00940000163577 ENSGT00510000046975.b.t ENSGT00390000007598 Pig-tailed macaque MODERN SPECIES 288 WNT9A (ENSMNEG00000028905) WNT3A (ENSMNEG00000037152) #13 ENSMNEG00000038219 ARF1 (ENSMNEG00000037278) #14 C1orf35 (ENSMNEG00000029724) #15 MRPL55 (ENSMNEG00000036387) ENSMNEG00000035833 ENSMNEG00000028444 #18 GJC2 (ENSMNEG00000000224) #19 IBA57 (ENSMNEG00000037320) #20 ENSMNEG00000033684 OBSCN (ENSMNEG00000039875) #22 ENSMNEG00000022017 TRIM11 (ENSMNEG00000029145) TRIM17 (ENSMNEG00000033783) H3-4 (ENSMNEG00000018662) H2AC25 (ENSMNEG00000011405) H2BC26 (ENSMNEG00000007106) ENSMNEG00000023271 RNF187 (ENSMNEG00000041115) Cercopithecinae_b ANCESTRAL SPECIES 3 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00910000148086 ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00860000136121 ENSGT00950000183080.a.b.a.b.b.`b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00440000034918.q.a.a.a.d.l.a.b ENSGT00390000016274 ENSGT00940000154756.A.vc #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510.a ENSGT00390000013340 ENSGT00550000076417 ENSGT00940000154842.a.b ENSGT00940000153464.A.b.a ENSGT00940000157769 ENSGT00940000168189 ENSGT00940000163577 ENSGT00510000046975.b.t Olive baboon MODERN SPECIES CDC42BPA (ENSPANG00000007777) ENSPANG00000048983 ENSPANG00000048924 JMJD4 (ENSPANG00000031507) SNAP47 (ENSPANG00000017951) PRSS38 (ENSPANG00000024006) WNT9A (ENSPANG00000048565) WNT3A (ENSPANG00000019711) #13 ENSPANG00000004523 #14 C1orf35 (ENSPANG00000009889) #15 MRPL55 (ENSPANG00000017717) ENSPANG00000020945 #18 GJC2 (ENSPANG00000035104) #19 IBA57 (ENSPANG00000021033) #20 ENSPANG00000030630 ENSPANG00000035184 #22 TRIM11 (ENSPANG00000004478) TRIM17 (ENSPANG00000014849) H3-4 (ENSPANG00000032788) H2AC25 (ENSPANG00000039633) H2BC26 (ENSPANG00000042066) ENSPANG00000050063 HSD17B7 (ENSPANG00000026079) ENSPANG00000045838 DDR2 (ENSPANG00000011453) ENSPANG00000046218 UAP1 (ENSPANG00000001322) UHMK1 (ENSPANG00000001321) SH2D1B (ENSPANG00000041929) SPATA46 (ENSPANG00000004524) ENSPANG00000023226 Cercopithecinae_d ANCESTRAL SPECIES 160 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00910000148086 ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00860000136121 ENSGT00950000183080.a.b.a.b.b.`b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00440000034918.q.a.a.a.d.l.a.b ENSGT00390000016274 ENSGT00940000154756.A.vc #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510.a Sooty mangabey MODERN SPECIES 269 ENSCATG00000028870 JMJD4 (ENSCATG00000030697) SNAP47 (ENSCATG00000017110) ENSCATG00000032383 PRSS38 (ENSCATG00000028007) WNT9A (ENSCATG00000037437) WNT3A (ENSCATG00000024249) #13 ENSCATG00000026444 ENSCATG00000034162 #14 C1orf35 (ENSCATG00000036828) #15 MRPL55 (ENSCATG00000001114) ENSCATG00000030372 #18 GJC2 (ENSCATG00000043427) #19 IBA57 (ENSCATG00000033547) #20 ENSCATG00000033121 ENSCATG00000015518 #22 ENSCATG00000018563 ENSCATG00000028342 #22 TRIM11 (ENSCATG00000037992) TRIM17 (ENSCATG00000004723) H3-4 (ENSCATG00000015110) H2AC25 (ENSCATG00000019930) H2BC26 (ENSCATG00000043414) ENSCATG00000016310 ENSCATG00000036222 Drill MODERN SPECIES 1468 ZNF678 (ENSMLEG00000030111) ENSMLEG00000029152 JMJD4 (ENSMLEG00000038450) SNAP47 (ENSMLEG00000028118) PRSS38 (ENSMLEG00000031236) WNT9A (ENSMLEG00000041830) WNT3A (ENSMLEG00000034108) #13 ENSMLEG00000010724 ARF1 (ENSMLEG00000040308) #14 C1orf35 (ENSMLEG00000044367) #15 MRPL55 (ENSMLEG00000043407) ENSMLEG00000033820 #18 IBA57 (ENSMLEG00000035651) #20 ENSMLEG00000000202 OBSCN (ENSMLEG00000039921) #22 TRIM11 (ENSMLEG00000035665) TRIM17 (ENSMLEG00000036683) H3-4 (ENSMLEG00000027834) H2AC25 (ENSMLEG00000019082) H2BC26 (ENSMLEG00000011931) ENSMLEG00000027649 Rhinopithecus ANCESTRAL SPECIES 247 ENSGT00390000012563.m.b.b ENSGT00910000147389 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00860000136121 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00390000016274 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 Black snub-nosed monkey MODERN SPECIES 736 WNT9A (ENSRBIG00000036258) WNT3A (ENSRBIG00000039877) #13 ENSRBIG00000040413 ARF1 (ENSRBIG00000043809) #14 C1orf35 (ENSRBIG00000032408) #15 MRPL55 (ENSRBIG00000038180) ENSRBIG00000030901 #18 GJC2 (ENSRBIG00000039202) #19 IBA57 (ENSRBIG00000042111) #20 ENSRBIG00000031054 OBSCN (ENSRBIG00000044496) #22 TRIM11 (ENSRBIG00000027735) TRIM17 (ENSRBIG00000017974) H3-4 (ENSRBIG00000029468) H2AC25 (ENSRBIG00000024183) H2BC26 (ENSRBIG00000013451) ENSRBIG00000029298 Golden snub-nosed monkey MODERN SPECIES 1428 OBSCN (ENSRROG00000044144) #22 TRIM11 (ENSRROG00000036560) TRIM17 (ENSRROG00000035878) H3-4 (ENSRROG00000010623) H2AC25 (ENSRROG00000007919) H2BC26 (ENSRROG00000024891) ENSRROG00000023607 RNF187 (ENSRROG00000024808) Hominoidea ANCESTRAL SPECIES 7 ENSGT00910000147389 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00860000136121 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00390000017697.a.n ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00390000016274 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000163997 ENSGT00940000156644 ENSGT00910000146652 ENSGT00940000157464 ENSGT00500000045533 ENSGT00390000003512 ENSGT00940000156048.b ENSGT00390000011529 Gibbon MODERN SPECIES 20 CDC42BPA (ENSNLEG00000013980) ZNF678 (ENSNLEG00000008917) ENSNLEG00000031801 JMJD4 (ENSNLEG00000032639) SNAP47 (ENSNLEG00000014097) PRSS38 (ENSNLEG00000014112) WNT9A (ENSNLEG00000014116) WNT3A (ENSNLEG00000014118) #13 ENSNLEG00000029254 ARF1 (ENSNLEG00000014137) #14 ENSNLEG00000033210 #15 ENSNLEG00000014215 ENSNLEG00000014235 #18 IBA57 (ENSNLEG00000014263) #20 ENSNLEG00000033321 ENSNLEG00000014265 #22 TRIM11 (ENSNLEG00000014315) TRIM17 (ENSNLEG00000014332) H3-4 (ENSNLEG00000031785) H2AC25 (ENSNLEG00000033352) H2BC26 (ENSNLEG00000033656) ENSNLEG00000029943 RHOU (ENSNLEG00000027920) ENSNLEG00000027599 RAB4A (ENSNLEG00000014339) ENSNLEG00000032941 ENSNLEG00000014345 ACTA1 (ENSNLEG00000014347) NUP133 (ENSNLEG00000014372) ABCB10 (ENSNLEG00000014442) TAF5L (ENSNLEG00000014446) Hominidae ANCESTRAL SPECIES 6 ENSGT00940000154251.A.a.a.a ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00860000136121 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00390000017697.a.n ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00390000016274 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000163997 ENSGT00940000156644 ENSGT00940000157464 ENSGT00390000003512 ENSGT00940000156048.b ENSGT00390000011529 ENSGT00910000148069 ENSGT00940000157680 Orangutan MODERN SPECIES COQ8A (ENSPPYG00000000159) CDC42BPA (ENSPPYG00000000158) ENSPPYG00000000155 JMJD4 (ENSPPYG00000000154) SNAP47 (ENSPPYG00000000153) PRSS38 (ENSPPYG00000000152) WNT9A (ENSPPYG00000000151) WNT3A (ENSPPYG00000000150) #13 ENSPPYG00000000149 ARF1 (ENSPPYG00000000148) #14 C1orf35 (ENSPPYG00000000147) #15 ENSPPYG00000000146 ENSPPYG00000000145 #18 GJC2 (ENSPPYG00000000144) #19 IBA57 (ENSPPYG00000039751) #20 ENSPPYG00000000139 #22 ENSPPYG00000000138 TRIM17 (ENSPPYG00000000137) H3-4 (ENSPPYG00000000136) H2AC25 (ENSPPYG00000030037) H2BC26 (ENSPPYG00000039326) ENSPPYG00000040985 RNF187 (ENSPPYG00000041257) ENSPPYG00000000133 ENSPPYG00000000131 RHOU (ENSPPYG00000000130) RAB4A (ENSPPYG00000000128) CCSAP (ENSPPYG00000039997) ACTA1 (ENSPPYG00000000127) NUP133 (ENSPPYG00000000126) ABCB10 (ENSPPYG00000000125) Homo/Pan/Gorilla group ANCESTRAL SPECIES 6 ENSGT00940000159380 ENSGT00910000147389 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00860000136121 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00390000017697.a.n ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00390000016274 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000156644 ENSGT00940000157464 ENSGT00390000003512 ENSGT00940000156048.b ENSGT00390000011529 ENSGT00910000148069 ENSGT00940000157680 ENSGT00940000153342.b.w Homo/Pan group ANCESTRAL SPECIES 7 ENSGT00940000159380 ENSGT00910000147389 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00860000136121 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00390000017697.a.n ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00390000016274 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000156644 ENSGT00940000157464 ENSGT00390000003512 ENSGT00940000156048.b ENSGT00390000011529 ENSGT00910000148069 ENSGT00940000157680 ENSGT00940000153342.b.w Pan ANCESTRAL SPECIES ENSGT00940000159380 ENSGT00910000147389 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00860000136121 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00390000017697.a.n ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00390000016274 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000156644 ENSGT00940000157464 ENSGT00390000003512 ENSGT00940000156048.b ENSGT00390000011529 ENSGT00910000148069 ENSGT00940000157680 ENSGT00940000153342.b.w Bonobo MODERN SPECIES ENSPPAG00000042694 JMJD4 (ENSPPAG00000041921) ENSPPAG00000043934 SNAP47 (ENSPPAG00000030087) PRSS38 (ENSPPAG00000029608) WNT9A (ENSPPAG00000040433) WNT3A (ENSPPAG00000033514) #13 ENSPPAG00000003062 ARF1 (ENSPPAG00000029612) #14 ENSPPAG00000031412 #15 ENSPPAG00000030545 ENSPPAG00000030143 ENSPPAG00000031110 #18 ENSPPAG00000034125 #20 ENSPPAG00000037707 OBSCN (ENSPPAG00000039604) #22 TRIM11 (ENSPPAG00000018913) TRIM17 (ENSPPAG00000018691) H3-4 (ENSPPAG00000020018) H2AC25 (ENSPPAG00000013459) H2BC26 (ENSPPAG00000025721) ENSPPAG00000001893 ENSPPAG00000034335 RAB4A (ENSPPAG00000036595) ACTA1 (ENSPPAG00000033916) NUP133 (ENSPPAG00000035148) ENSPPAG00000025609 ABCB10 (ENSPPAG00000012448) TAF5L (ENSPPAG00000034307) URB2 (ENSPPAG00000040629) ENSPPAG00000004114 Chimpanzee MODERN SPECIES JMJD4 (ENSPTRG00000002059) ENSPTRG00000048948 SNAP47 (ENSPTRG00000002060) PRSS38 (ENSPTRG00000002061) WNT9A (ENSPTRG00000002062) WNT3A (ENSPTRG00000002064) #13 ENSPTRG00000046943 ARF1 (ENSPTRG00000002066) #14 C1H1orf35 (ENSPTRG00000002067) #15 MRPL55 (ENSPTRG00000002068) ENSPTRG00000051540 GUK1 (ENSPTRG00000002069) #18 GJC2 (ENSPTRG00000002070) #19 IBA57 (ENSPTRG00000002072) #20 ENSPTRG00000002073 OBSCN (ENSPTRG00000046375) #22 TRIM11 (ENSPTRG00000002071) TRIM17 (ENSPTRG00000002076) H3-4 (ENSPTRG00000052362) H2AC25 (ENSPTRG00000047640) H2BC26 (ENSPTRG00000050958) ENSPTRG00000048372 H2BC27 (ENSPTRG00000049906) RNF187 (ENSPTRG00000002079) RHOU (ENSPTRG00000045909) RAB4A (ENSPTRG00000002083) CCSAP (ENSPTRG00000002085) ACTA1 (ENSPTRG00000002086) NUP133 (ENSPTRG00000002088) ABCB10 (ENSPTRG00000002090) TAF5L (ENSPTRG00000002091) Human MODERN SPECIES PSEN2 (ENSG00000143801) COQ8A (ENSG00000163050) CDC42BPA (ENSG00000143776) ZNF678 (ENSG00000181450) SNAP47 (ENSG00000143740) JMJD4 (ENSG00000081692) PRSS38 (ENSG00000185888) WNT9A (ENSG00000143816) WNT3A (ENSG00000154342) #13 ARF1 (ENSG00000143761) #14 C1orf35 (ENSG00000143793) #15 MRPL55 (ENSG00000162910) GUK1 (ENSG00000143774) #18 GJC2 (ENSG00000198835) #19 IBA57 (ENSG00000181873) #20 OBSCN (ENSG00000154358) #22 TRIM11 (ENSG00000154370) TRIM17 (ENSG00000162931) H3-4 (ENSG00000168148) H2AC25 (ENSG00000181218) H2BC26 (ENSG00000196890) RNF187 (ENSG00000168159) RHOU (ENSG00000116574) RAB4A (ENSG00000168118) CCSAP (ENSG00000154429) ACTA1 (ENSG00000143632) NUP133 (ENSG00000069248) ABCB10 (ENSG00000135776) TAF5L (ENSG00000135801) URB2 (ENSG00000135763) GALNT2 (ENSG00000143641) Gorilla MODERN SPECIES ENSGGOG00000037683 SNAP47 (ENSGGOG00000008442) PRSS38 (ENSGGOG00000012849) WNT9A (ENSGGOG00000004569) ENSGGOG00000037788 WNT3A (ENSGGOG00000006562) #13 ENSGGOG00000023449 ARF1 (ENSGGOG00000011263) #14 C1orf35 (ENSGGOG00000015702) #15 ENSGGOG00000015709 ENSGGOG00000039931 ENSGGOG00000013567 #18 ENSGGOG00000027354 #19 IBA57 (ENSGGOG00000013646) #20 ENSGGOG00000012820 ENSGGOG00000012717 #22 TRIM11 (ENSGGOG00000016890) TRIM17 (ENSGGOG00000016899) ENSGGOG00000027960 H2AC25 (ENSGGOG00000037094) H2BC26 (ENSGGOG00000039267) ENSGGOG00000037971 ENSGGOG00000026023 ENSGGOG00000011409 ENSGGOG00000007918 ENSGGOG00000040773 RAB4A (ENSGGOG00000015714) CCSAP (ENSGGOG00000014931) ACTA1 (ENSGGOG00000011599) NUP133 (ENSGGOG00000000930) ABCB10 (ENSGGOG00000008699) Platyrrhini ANCESTRAL SPECIES 55 ENSGT00940000162415 ENSGT00940000161967 ENSGT00910000148176 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b.bb.a #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00390000016274 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000163997 Cebidae ANCESTRAL SPECIES 23 ENSGT01090000260044.A.b.a.a.a.b ENSGT00940000162415 ENSGT00940000161967 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b.bb.a #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00390000016274 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263504.a.b.b.b.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000163997 ENSGT00390000018900 ENSGT00390000004799 ENSGT00390000005861 ENSGT00950000183142.a.b.a.b ENSGT00940000156766 ENSGT00940000156992 ENSGT00940000160590 Marmoset MODERN SPECIES 10 ENSCJAG00000066453 ENSCJAG00000082577 ZNF124 (ENSCJAG00000011765) ZNF670 (ENSCJAG00000011738) ZNF669 (ENSCJAG00000048657) JMJD4 (ENSCJAG00000011727) SNAP47 (ENSCJAG00000039821) WNT9A (ENSCJAG00000080517) WNT3A (ENSCJAG00000016650) #13 ARF1 (ENSCJAG00000041786) #14 C1orf35 (ENSCJAG00000016721) #15 MRPL55 (ENSCJAG00000016730) ENSCJAG00000016738 #18 GJC2 (ENSCJAG00000016746) #19 IBA57 (ENSCJAG00000016749) #20 OBSCN (ENSCJAG00000054288) #22 TRIM11 (ENSCJAG00000016757) TRIM17 (ENSCJAG00000016765) H2AC25 (ENSCJAG00000083637) H2BC26 (ENSCJAG00000077602) ENSCJAG00000071519 RNF187 (ENSCJAG00000016779) ENSCJAG00000059253 ENSCJAG00000082135 AHCTF1 (ENSCJAG00000016790) SCCPDH (ENSCJAG00000016806) CNST (ENSCJAG00000016834) TFB2M (ENSCJAG00000016845) ENSCJAG00000055715 SMYD3 (ENSCJAG00000016856) ENSCJAG00000079381 Cebidae_a ANCESTRAL SPECIES 11 ENSGT01090000260044.A.b.a.a.a.b ENSGT00940000162415 ENSGT00940000161967 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b.bb.a #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00390000016274 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263504.a.b.b.b.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000163997 ENSGT00390000018900 ENSGT00390000004799 ENSGT00390000005861 ENSGT00950000183142.a.b.a.b ENSGT00940000156766 ENSGT00940000156992 ENSGT00940000160590 Capuchin MODERN SPECIES 75 ZNF670 (ENSCCAG00000027449) ENSCCAG00000031402 ENSCCAG00000021671 JMJD4 (ENSCCAG00000035807) SNAP47 (ENSCCAG00000027134) PRSS38 (ENSCCAG00000020907) WNT9A (ENSCCAG00000030978) WNT3A (ENSCCAG00000009359) #13 ENSCCAG00000023374 #14 C1orf35 (ENSCCAG00000020266) #15 MRPL55 (ENSCCAG00000031724) GUK1 (ENSCCAG00000035707) #18 GJC2 (ENSCCAG00000020287) #19 IBA57 (ENSCCAG00000019844) #20 ENSCCAG00000023630 OBSCN (ENSCCAG00000032571) #22 ENSCCAG00000016195 TRIM11 (ENSCCAG00000036943) TRIM17 (ENSCCAG00000025121) ENSCCAG00000036407 H2AW (ENSCCAG00000012315) H2BU1 (ENSCCAG00000015023) ENSCCAG00000012567 RNF187 (ENSCCAG00000028705) ENSCCAG00000025344 ENSCCAG00000018435 AHCTF1 (ENSCCAG00000023436) SCCPDH (ENSCCAG00000022176) ENSCCAG00000020404 CNST (ENSCCAG00000038009) TFB2M (ENSCCAG00000028811) Bolivian squirrel monkey MODERN SPECIES 114 OR2C3 (ENSSBOG00000028292) OR2B11 (ENSSBOG00000031196) NLRP3 (ENSSBOG00000030084) ZNF496 (ENSSBOG00000005783) ENSSBOG00000021324 JMJD4 (ENSSBOG00000026344) ENSSBOG00000025438 PRSS38 (ENSSBOG00000025229) WNT9A (ENSSBOG00000025218) WNT3A (ENSSBOG00000020846) #13 ENSSBOG00000030557 #14 C1orf35 (ENSSBOG00000023673) #15 MRPL55 (ENSSBOG00000035388) GUK1 (ENSSBOG00000026897) #18 IBA57 (ENSSBOG00000022497) #20 OBSCN (ENSSBOG00000032380) #22 TRIM11 (ENSSBOG00000005125) TRIM17 (ENSSBOG00000030344) H2AC25 (ENSSBOG00000019953) H2BC26 (ENSSBOG00000008375) ENSSBOG00000019925 AHCTF1 (ENSSBOG00000004404) SCCPDH (ENSSBOG00000021995) CNST (ENSSBOG00000028424) TFB2M (ENSSBOG00000033950) ENSSBOG00000035160 SMYD3 (ENSSBOG00000026164) KIF26B (ENSSBOG00000034697) EFCAB2 (ENSSBOG00000034755) HNRNPU (ENSSBOG00000026500) COX20 (ENSSBOG00000029804) Mas night monkey DUPLICATION Mas night monkey MODERN SPECIES 1116 ZNF496 (ENSANAG00000022228) ZNF124 (ENSANAG00000029658) ZNF670 (ENSANAG00000033492) ZNF669 (ENSANAG00000013317) ENSANAG00000022916 JMJD4 (ENSANAG00000028105) SNAP47 (ENSANAG00000035151) WNT9A (ENSANAG00000032624) WNT3A (ENSANAG00000021377) #13 ENSANAG00000036021 #14 C1orf35 (ENSANAG00000020714) #15 MRPL55 (ENSANAG00000036592) GUK1 (ENSANAG00000027172) #18 IBA57 (ENSANAG00000022164) #20 ENSANAG00000029250 OBSCN (ENSANAG00000024031) #22 TRIM11 (ENSANAG00000034240) ENSANAG00000028749 ENSANAG00000022375 H2AC25 (ENSANAG00000031714) H2BC26 (ENSANAG00000010772) ENSANAG00000031738 ENSANAG00000026087 Mas night monkey MODERN SPECIES 119 ENSANAG00000024508 #22 Euarchontoglires_A ANCESTRAL SPECIES 28 ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b ENSGT01090000260044.A.b.a.a.a.b ENSGT00940000162415 ENSGT00940000161967 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000163997 Glires ANCESTRAL SPECIES 29 ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b ENSGT01090000260044.A.b.a.a.a.b ENSGT00940000162415 ENSGT00940000161967 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000163997 Lagomorpha ANCESTRAL SPECIES 245 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b Pika MODERN SPECIES 1849 ENSOPRG00000006266 #18 GJC2 (ENSOPRG00000006277) #19 IBA57 (ENSOPRG00000006282) #20 ENSOPRG00000006299 #22 ENSOPRG00000006380 TRIM11 (ENSOPRG00000006293) Rabbit MODERN SPECIES 793 ENSOCUG00000011505 #22 TRIM11 (ENSOCUG00000038242) TRIM17 (ENSOCUG00000014636) H2BC26 (ENSOCUG00000033562) ENSOCUG00000022340 Rodentia ANCESTRAL SPECIES 7 ENSGT01090000260044.A.b.a.a.a.a.a ENSGT01090000260044.A.b.a.a.a.b ENSGT00940000162415 ENSGT00940000161967 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000163997 Rodentia_A ANCESTRAL SPECIES 31 ENSGT01090000260044.A.b.a.a.a.a.a ENSGT01090000260044.A.b.a.a.a.b ENSGT00940000162415 ENSGT00940000161967 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000163997 Hystricomorpha ANCESTRAL SPECIES 63 ENSGT01090000260044.A.b.a.a.a.a.a.c ENSGT01090000260044.A.b.a.a.a.b ENSGT00940000162415 ENSGT00940000161967 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000163997 Naked mole-rat female MODERN SPECIES ENSHGLG00000000671 ENSHGLG00000043542 ENSHGLG00000001102 ENSHGLG00000047340 JMJD4 (ENSHGLG00000001365) ENSHGLG00000001357 PRSS38 (ENSHGLG00000043627) WNT9A (ENSHGLG00000038418) WNT3A (ENSHGLG00000001502) #13 ARF1 (ENSHGLG00000038119) #14 ENSHGLG00000001640 #15 MRPL55 (ENSHGLG00000048301) GUK1 (ENSHGLG00000000309) #18 GJC2 (ENSHGLG00000033969) #19 IBA57 (ENSHGLG00000002132) #20 OBSCN (ENSHGLG00000047806) #22 TRIM11 (ENSHGLG00000002253) TRIM17 (ENSHGLG00000006970) H3-4 (ENSHGLG00000020558) H2AC25 (ENSHGLG00000037975) H2BC26 (ENSHGLG00000044541) ENSHGLG00000035981 ENSHGLG00000000597 ENSHGLG00000038457 ENSHGLG00000049243 ENSHGLG00000033964 ENSHGLG00000032928 ENSHGLG00000046686 ENSHGLG00000047273 ENSHGLG00000019679 ENSHGLG00000019790 Hystricomorpha_a ANCESTRAL SPECIES 79 ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b ENSGT01090000260044.A.b.a.a.a.b ENSGT00940000162415 ENSGT00940000161967 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000163997 Hystricomorpha_b ANCESTRAL SPECIES 106 ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b ENSGT01090000260044.A.b.a.a.a.b ENSGT00940000162415 ENSGT00940000161967 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000163997 ENSGT00940000160177 Long-tailed chinchilla MODERN SPECIES 288 OR9H1P (ENSCLAG00000017416) OR2G3 (ENSCLAG00000017414) ENSCLAG00000000375 OR2B11 (ENSCLAG00000017578) NLRP3 (ENSCLAG00000000708) ZNF496 (ENSCLAG00000000579) JMJD4 (ENSCLAG00000000501) SNAP47 (ENSCLAG00000000744) WNT9A (ENSCLAG00000000535) WNT3A (ENSCLAG00000000529) #13 ARF1 (ENSCLAG00000000520) #14 C1orf35 (ENSCLAG00000001077) #15 MRPL55 (ENSCLAG00000000917) GUK1 (ENSCLAG00000000853) #18 IBA57 (ENSCLAG00000000741) #20 ENSCLAG00000000505 #22 TRIM11 (ENSCLAG00000000197) TRIM17 (ENSCLAG00000000538) H2BC26 (ENSCLAG00000017444) ENSCLAG00000017452 RNF187 (ENSCLAG00000001629) ENSCLAG00000001526 ENSCLAG00000001377 Sciuridae ANCESTRAL SPECIES 55 ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b ENSGT01090000260044.A.b.a.a.a.b ENSGT00940000162415 ENSGT00940000161967 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000163997 Eurasian red squirrel MODERN SPECIES 15 OR2C3 (ENSSVLG00005004659) NLRP3 (ENSSVLG00005004506) JMJD4 (ENSSVLG00005004411) SNAP47 (ENSSVLG00005004391) PRSS38 (ENSSVLG00005004365) WNT9A (ENSSVLG00005004346) WNT3A (ENSSVLG00005004327) #13 ENSSVLG00005004310 #14 C1orf35 (ENSSVLG00005004286) #15 MRPL55 (ENSSVLG00005004258) ENSSVLG00005004242 GUK1 (ENSSVLG00005004220) #18 ENSSVLG00005004192 GJC2 (ENSSVLG00005004174) #19 IBA57 (ENSSVLG00005004163) #20 OBSCN (ENSSVLG00005004022) #22 TRIM11 (ENSSVLG00005003920) TRIM17 (ENSSVLG00005003894) H3-4 (ENSSVLG00005003884) H2AC25 (ENSSVLG00005003875) H2BC26 (ENSSVLG00005003865) ENSSVLG00005003856 RNF187 (ENSSVLG00005003848) ENSSVLG00005003828 ENSSVLG00005003818 ZNF496 (ENSSVLG00005003801) Marmotini ANCESTRAL SPECIES 100 ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a ENSGT01090000260044.A.b.a.a.a.b ENSGT00940000162415 ENSGT00940000161967 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000163997 Alpin marmot MODERN SPECIES 56 OR2B11 (ENSMMMG00000017357) NLRP3 (ENSMMMG00000017362) ZNF496 (ENSMMMG00000017364) ENSMMMG00000017372 ENSMMMG00000017378 JMJD4 (ENSMMMG00000017399) SNAP47 (ENSMMMG00000017415) PRSS38 (ENSMMMG00000017421) WNT9A (ENSMMMG00000017429) WNT3A (ENSMMMG00000017437) #13 ENSMMMG00000017464 #14 MRPL55 (ENSMMMG00000017475) GUK1 (ENSMMMG00000017488) #18 GJC2 (ENSMMMG00000017501) #19 IBA57 (ENSMMMG00000017504) #20 OBSCN (ENSMMMG00000017510) #22 TRIM11 (ENSMMMG00000017547) TRIM17 (ENSMMMG00000017550) H3-4 (ENSMMMG00000017555) H2AC25 (ENSMMMG00000017567) H2BC26 (ENSMMMG00000017570) ENSMMMG00000017596 RNF187 (ENSMMMG00000017598) ENSMMMG00000017603 ENSMMMG00000017616 Rodentia_B ANCESTRAL SPECIES 46 ENSGT01090000260044.A.b.a.a.a.a.a ENSGT01090000260044.A.b.a.a.a.b ENSGT00940000162415 ENSGT00940000161967 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000163997 ENSGT00940000160177 ENSGT00940000162246 ENSGT01090000260018.A.a.a.b.b ENSGT01090000259995.a.a.b.a.b.b ENSGT01090000259995.a.a.a ENSGT00390000010671 ENSGT00730000111648 Kangaroo rat MODERN SPECIES 346 ENSDORG00000027626 Nlrp3 (ENSDORG00000010673) Zkscan17 (ENSDORG00000028040) Wnt9a (ENSDORG00000005390) ENSDORG00000027855 #14 Guk1 (ENSDORG00000007614) #18 Obscn (ENSDORG00000016208) #22 Trim11 (ENSDORG00000029829) H2ac25 (ENSDORG00000026130) H2bc26-ps (ENSDORG00000024270) ENSDORG00000005512 Sh3bp5l (ENSDORG00000007183) Fasl (ENSDORG00000011897) Suco (ENSDORG00000011895) Pigc (ENSDORG00000030248) Dnm3 (ENSDORG00000002505) Mettl13 (ENSDORG00000011976) Prrc2c (ENSDORG00000001422) Fmo1 (ENSDORG00000029306) Fmo2 (ENSDORG00000004731) Fmo3 (ENSDORG00000006804) ENSDORG00000003154 Myomorpha ANCESTRAL SPECIES 28 ENSGT01090000260044.A.b.a.a.a.b ENSGT00940000162415 ENSGT00940000161967 ENSGT00950000182755.b.a.a.a.a.b ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000163997 ENSGT00940000160177 ENSGT00390000006224 ENSGT01090000260018.C.b.a.a ENSGT01090000260018.C.a ENSGT01090000259995.b.b.a.b ENSGT01100000263486.a.b.a.b.b.a.a ENSGT00940000162246 Lesser Egyptian jerboa MODERN SPECIES 63 Or2b11 (ENSJJAG00000004515) Nlrp3 (ENSJJAG00000007323) Zkscan17 (ENSJJAG00000022828) Zfp867 (ENSJJAG00000008459) Jmjd4 (ENSJJAG00000012776) Snap47 (ENSJJAG00000023009) Prss38 (ENSJJAG00000022512) Wnt9a (ENSJJAG00000020971) Wnt3a (ENSJJAG00000020598) #13 ENSJJAG00000020245 #14 2310033P09Rik (ENSJJAG00000001888) #15 Mrpl55 (ENSJJAG00000021164) Guk1 (ENSJJAG00000021658) #18 Gjc2 (ENSJJAG00000011405) #19 Iba57 (ENSJJAG00000023432) #20 Obscn (ENSJJAG00000023196) #22 Trim11 (ENSJJAG00000019654) Trim17 (ENSJJAG00000017850) ENSJJAG00000017460 H2ac25 (ENSJJAG00000004184) H2bc26-ps (ENSJJAG00000003959) ENSJJAG00000011864 Btnl10 (ENSJJAG00000023413) Zfp39 (ENSJJAG00000018925) ENSJJAG00000000550 Fam183b (ENSJJAG00000018849) Or2t44 (ENSJJAG00000018515) ENSJJAG00000003913 Trim58 (ENSJJAG00000016816) Or11l3 (ENSJJAG00000002201) ENSJJAG00000012885 Muroidea ANCESTRAL SPECIES 10 ENSGT01090000260044.A.b.a.a.a.b ENSGT00940000162415 ENSGT00940000161967 ENSGT00950000182755.b.a.a.a.a.b ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000163997 ENSGT00940000160177 ENSGT00390000006224 ENSGT01090000260018.C.b.a.a ENSGT01090000260018.C.a ENSGT01090000259995.b.b.a.b ENSGT01100000263486.a.b.a.b.b.a.a ENSGT00940000162246 Upper Galilee mountains blind mole rat MODERN SPECIES 540 Guk1 (ENSNGAG00000022722) #18 Gjc2 (ENSNGAG00000022035) #19 Iba57 (ENSNGAG00000021761) #20 Obscn (ENSNGAG00000023799) #22 Trim11 (ENSNGAG00000023375) Trim17 (ENSNGAG00000023965) ENSNGAG00000011099 H2ac25 (ENSNGAG00000012071) H2bc26-ps (ENSNGAG00000012301) H2bc27 (ENSNGAG00000010344) ENSNGAG00000019603 Btnl10 (ENSNGAG00000011467) Zfp39 (ENSNGAG00000019853) ENSNGAG00000012548 2810021J22Rik (ENSNGAG00000011744) ENSNGAG00000024130 Fam183b (ENSNGAG00000019487) ENSNGAG00000003871 ENSNGAG00000011228 Muroidea_A ANCESTRAL SPECIES 1 ENSGT00940000162415 ENSGT00900000143207 ENSGT00940000161967 ENSGT00950000182755.b.a.a.a.a.b ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000163997 ENSGT00940000160177 ENSGT00940000159981.e.a ENSGT00940000159981.e.b ENSGT01060000248581.C.a.b.a.a ENSGT00390000006224 ENSGT01090000260018.C.b.a.a ENSGT01090000260018.C.a Murinae ANCESTRAL SPECIES 7 ENSGT00940000162415 ENSGT00900000143207 ENSGT00940000161967 ENSGT00950000182755.b.a.a.a.a.b ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00950000183522 ENSGT00940000163997 ENSGT00940000160177 ENSGT00940000159981.e.a ENSGT00940000159981.e.b ENSGT01060000248581.C.a.b.a.a ENSGT00390000006224 ENSGT01090000260018.C.b.a.a ENSGT01090000260018.C.a Mus ANCESTRAL SPECIES 2 ENSGT00940000162415 ENSGT00900000143207 ENSGT00940000161967 ENSGT00950000182755.b.a.a.a.a.b ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00950000183522 ENSGT00940000163997 ENSGT00940000160177 ENSGT00940000159981.e.a ENSGT00940000159981.e.b ENSGT00390000006224 ENSGT01090000260018.C.b.a.a ENSGT01090000260018.C.a ENSGT01090000259995.b.b.a.b.i Mus_A ANCESTRAL SPECIES 2 ENSGT00940000162415 ENSGT00900000143207 ENSGT00940000161967 ENSGT00950000182755.b.a.a.a.a.b ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b.g.a #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00950000183522 ENSGT00940000163997 ENSGT00940000160177 ENSGT00940000159981.e.a ENSGT00940000159981.e.b ENSGT00390000006224 ENSGT01090000260018.C.b.a.a ENSGT01090000260018.C.a ENSGT01090000259995.b.b.a.b.i.c.b Ryukyu mouse MODERN SPECIES 2 Nlrp3 (MGP_CAROLIEiJ_G0016439) Zkscan17 (MGP_CAROLIEiJ_G0016438) Zfp867 (MGP_CAROLIEiJ_G0016437) Jmjd4 (MGP_CAROLIEiJ_G0016436) MGP_CAROLIEiJ_G0016435 Prss38 (MGP_CAROLIEiJ_G0016434) Wnt9a (MGP_CAROLIEiJ_G0016433) Wnt3a (MGP_CAROLIEiJ_G0016432) #13 MGP_CAROLIEiJ_G0016431 #14 MGP_CAROLIEiJ_G0016430 #14 2310033P09Rik (MGP_CAROLIEiJ_G0016429) #15 Mrpl55 (MGP_CAROLIEiJ_G0016428) Guk1 (MGP_CAROLIEiJ_G0016427) #18 Gjc2 (MGP_CAROLIEiJ_G0016426) #19 Iba57 (MGP_CAROLIEiJ_G0016425) #20 MGP_CAROLIEiJ_G0016424 #22 Trim11 (MGP_CAROLIEiJ_G0016423) Trim17 (MGP_CAROLIEiJ_G0016421) H2ac25 (MGP_CAROLIEiJ_G0016422) H2bc27 (MGP_CAROLIEiJ_G0016420) MGP_CAROLIEiJ_G0016419 Btnl10 (MGP_CAROLIEiJ_G0016418) Zfp39 (MGP_CAROLIEiJ_G0016417) 2810021J22Rik (MGP_CAROLIEiJ_G0016416) Gm12258 (MGP_CAROLIEiJ_G0016415) Fam183b (MGP_CAROLIEiJ_G0016414) Or2t44 (MGP_CAROLIEiJ_G0016413) Or2t45 (MGP_CAROLIEiJ_G0016412) MGP_CAROLIEiJ_G0016411 MGP_CAROLIEiJ_G0016410 MGP_CAROLIEiJ_G0016409 Mus_B ANCESTRAL SPECIES 2 ENSGT00940000162415 ENSGT00900000143207 ENSGT00940000161967 ENSGT00950000182755.b.a.a.a.a.b ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b.g.a #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00950000183522 ENSGT00940000163997 ENSGT00940000160177 ENSGT00940000159981.e.a ENSGT00940000159981.e.b ENSGT01060000248581.C.a.b.a.a.l ENSGT00390000006224 ENSGT01090000260018.C.b.a.a ENSGT01090000260018.C.a Mouse MODERN SPECIES 2 Or2b11 (ENSMUSG00000059610) Nlrp3 (ENSMUSG00000032691) Zkscan17 (ENSMUSG00000020472) Zfp867 (ENSMUSG00000054519) Jmjd4 (ENSMUSG00000036819) Snap47 (ENSMUSG00000009894) Prss38 (ENSMUSG00000049291) Wnt9a (ENSMUSG00000000126) Wnt3a (ENSMUSG00000009900) #13 Arf1 (ENSMUSG00000048076) #14 2310033P09Rik (ENSMUSG00000020441) #15 Mrpl55 (ENSMUSG00000036860) Guk1 (ENSMUSG00000020444) #18 Gjc2 (ENSMUSG00000043448) #19 Iba57 (ENSMUSG00000049287) #20 Obscn (ENSMUSG00000061462) #22 Trim11 (ENSMUSG00000020455) H3f4 (ENSMUSG00000080152) Trim17 (ENSMUSG00000036964) H2ac25 (ENSMUSG00000078851) H2bc26-ps (ENSMUSG00000080712) H2bc27 (ENSMUSG00000056895) Rnf187 (ENSMUSG00000020496) Btnl10 (ENSMUSG00000020490) Zfp39 (ENSMUSG00000037001) 2810021J22Rik (ENSMUSG00000020491) Gm12258 (ENSMUSG00000072915) Or9e1 (ENSMUSG00000094805) Or5af1 (ENSMUSG00000096806) Or5af2 (ENSMUSG00000070438) Fam183b (ENSMUSG00000049154) Mus_C ANCESTRAL SPECIES 3 ENSGT00940000162415 ENSGT00900000143207 ENSGT00940000161967 ENSGT00950000182755.b.a.a.a.a.b ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b.g.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00950000183522 ENSGT00940000163997 ENSGT00940000160177 ENSGT00940000159981.e.a ENSGT00940000159981.e.b ENSGT01060000248581.C.a.b.a.a.l ENSGT00390000006224 ENSGT01090000260018.C.b.a.a ENSGT01090000260018.C.a Steppe mouse MODERN SPECIES 3105 Zkscan17 (ENSMSIG00000020997) ENSMSIG00000021018 Zfp867 (ENSMSIG00000021023) Jmjd4 (ENSMSIG00000021041) Snap47 (ENSMSIG00000021067) Prss38 (ENSMSIG00000021101) Wnt9a (ENSMSIG00000021113) Wnt3a (ENSMSIG00000021119) #13 ENSMSIG00000021128 #14 2310033P09Rik (ENSMSIG00000021149) #15 Mrpl55 (ENSMSIG00000021173) Guk1 (ENSMSIG00000021189) #18 Gjc2 (ENSMSIG00000021219) #19 Iba57 (ENSMSIG00000021231) #20 ENSMSIG00000021247 Obscn (ENSMSIG00000021262) #22 ENSMSIG00000021680 Trim11 (ENSMSIG00000021692) Trim17 (ENSMSIG00000021747) H3f4 (ENSMSIG00000021760) H2ac25 (ENSMSIG00000021773) H2bc26-ps (ENSMSIG00000021777) H2bc27 (ENSMSIG00000021813) ENSMSIG00000021818 Btnl10 (ENSMSIG00000021827) Zfp39 (ENSMSIG00000021841) 2810021J22Rik (ENSMSIG00000021856) Gm12258 (ENSMSIG00000021863) Or5af2 (ENSMSIG00000021882) ENSMSIG00000021888 Or2t44 (ENSMSIG00000021908) spretus MODERN SPECIES 2 MGP_SPRETEiJ_G0017276 Or2b11 (MGP_SPRETEiJ_G0017275) Nlrp3 (MGP_SPRETEiJ_G0017274) Zkscan17 (MGP_SPRETEiJ_G0017273) Zfp867 (MGP_SPRETEiJ_G0017272) Jmjd4 (MGP_SPRETEiJ_G0017271) Snap47 (MGP_SPRETEiJ_G0017270) Prss38 (MGP_SPRETEiJ_G0017269) Wnt9a (MGP_SPRETEiJ_G0017268) Wnt3a (MGP_SPRETEiJ_G0017267) #13 2310033P09Rik (MGP_SPRETEiJ_G0017266) #15 Mrpl55 (MGP_SPRETEiJ_G0017265) Guk1 (MGP_SPRETEiJ_G0017264) #18 Gjc2 (MGP_SPRETEiJ_G0017263) #19 Iba57 (MGP_SPRETEiJ_G0017262) #20 Obscn (MGP_SPRETEiJ_G0017261) #22 Trim11 (MGP_SPRETEiJ_G0017260) Trim17 (MGP_SPRETEiJ_G0017259) H2ac25 (MGP_SPRETEiJ_G0017258) H2bc27 (MGP_SPRETEiJ_G0017257) MGP_SPRETEiJ_G0017256 Btnl10 (MGP_SPRETEiJ_G0017255) Zfp39 (MGP_SPRETEiJ_G0017254) 2810021J22Rik (MGP_SPRETEiJ_G0017253) Gm12258 (MGP_SPRETEiJ_G0017252) Fam183b (MGP_SPRETEiJ_G0017251) Or2t44 (MGP_SPRETEiJ_G0017250) Or2t45 (MGP_SPRETEiJ_G0017249) MGP_SPRETEiJ_G0017248 MGP_SPRETEiJ_G0017247 Or11l3 (MGP_SPRETEiJ_G0017246) Shrew mouse MODERN SPECIES 5 Or2b11 (MGP_PahariEiJ_G0017570) MGP_PahariEiJ_G0017569 Zkscan17 (MGP_PahariEiJ_G0017568) Zfp867 (MGP_PahariEiJ_G0017567) Jmjd4 (MGP_PahariEiJ_G0017566) MGP_PahariEiJ_G0017565 Prss38 (MGP_PahariEiJ_G0017564) Wnt9a (MGP_PahariEiJ_G0017563) Wnt3a (MGP_PahariEiJ_G0017562) #13 Arf1 (MGP_PahariEiJ_G0017561) #14 2310033P09Rik (MGP_PahariEiJ_G0017560) #15 Mrpl55 (MGP_PahariEiJ_G0017559) Guk1 (MGP_PahariEiJ_G0017558) #18 Gjc2 (MGP_PahariEiJ_G0017557) #19 Iba57 (MGP_PahariEiJ_G0017556) #20 Obscn (MGP_PahariEiJ_G0017555) #22 Trim11 (MGP_PahariEiJ_G0017554) Trim17 (MGP_PahariEiJ_G0017553) H2ac25 (MGP_PahariEiJ_G0017552) H2bc27 (MGP_PahariEiJ_G0017551) MGP_PahariEiJ_G0017550 Btnl10 (MGP_PahariEiJ_G0017549) Zfp39 (MGP_PahariEiJ_G0017548) 2810021J22Rik (MGP_PahariEiJ_G0017547) Gm12258 (MGP_PahariEiJ_G0017546) Fam183b (MGP_PahariEiJ_G0017545) Or2t44 (MGP_PahariEiJ_G0017544) Or2t45 (MGP_PahariEiJ_G0017543) Trim58 (MGP_PahariEiJ_G0017542) Or11l3 (MGP_PahariEiJ_G0017541) MGP_PahariEiJ_G0017540 Rat MODERN SPECIES 1 Nlrp3 (ENSRNOG00000003170) Zfp496 (ENSRNOG00000003129) Ftl1 (ENSRNOG00000020843) Zfp867 (ENSRNOG00000022431) Jmjd4 (ENSRNOG00000022438) Snap47 (ENSRNOG00000022472) Prss38 (ENSRNOG00000022548) Wnt9a (ENSRNOG00000003066) Wnt3a (ENSRNOG00000003039) #13 Arf1 (ENSRNOG00000060229) #14 C10h1orf35 (ENSRNOG00000002944) #15 Mrpl55 (ENSRNOG00000002943) Guk1 (ENSRNOG00000002928) #18 Gjc2 (ENSRNOG00000038328) #19 Iba57 (ENSRNOG00000068756) #20 Obscn (ENSRNOG00000058068) #22 Trim11 (ENSRNOG00000002915) H2ac25 (ENSRNOG00000022983) H2ac25 (ENSRNOG00000064520) H2bu1 (ENSRNOG00000066919) Hist3h2ba (ENSRNOG00000043419) Rnf187 (ENSRNOG00000049219) Btnl10 (ENSRNOG00000043019) Zfp39 (ENSRNOG00000014712) LOC102555635 (ENSRNOG00000023431) RGD1561277 (ENSRNOG00000051868) Or9e1b (ENSRNOG00000062948) Or5af1c (ENSRNOG00000069086) Or5af1 (ENSRNOG00000069128) Or5af1b (ENSRNOG00000065010) Cfap144 (ENSRNOG00000002873) Cricetidae ANCESTRAL SPECIES ENSGT00940000162415 ENSGT00900000143207 ENSGT00940000161967 ENSGT00950000182755.b.a.a.a.a.b ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000163997 ENSGT00940000160177 ENSGT00940000159981.e.a ENSGT00940000159981.e.b ENSGT01060000248581.C.a.b.a.a ENSGT00390000006224 ENSGT01090000260018.C.b.a.a ENSGT01090000260018.C.a Cricetinae ANCESTRAL SPECIES ENSGT00940000162415 ENSGT00900000143207 ENSGT00940000161967 ENSGT00950000182755.b.a.a.a.a.b ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000163997 ENSGT00940000160177 ENSGT00940000159981.e.a ENSGT00940000159981.e.b ENSGT01060000248581.C.a.b.a.a ENSGT00390000006224 ENSGT01090000260018.C.b.a.a ENSGT01090000260018.C.a Golden Hamster MODERN SPECIES 627 Nlrp3 (ENSMAUG00000020051) ENSMAUG00000006329 ENSMAUG00000017910 Zkscan17 (ENSMAUG00000016630) ENSMAUG00000019046 Jmjd4 (ENSMAUG00000017265) Snap47 (ENSMAUG00000020014) Prss38 (ENSMAUG00000019978) Wnt9a (ENSMAUG00000021643) Wnt3a (ENSMAUG00000021475) #13 ENSMAUG00000022253 #14 2310033P09Rik (ENSMAUG00000019958) #15 Guk1 (ENSMAUG00000022283) #18 Gjc2 (ENSMAUG00000020150) #19 Iba57 (ENSMAUG00000020575) #20 Obscn (ENSMAUG00000022279) #22 Trim11 (ENSMAUG00000001510) Trim17 (ENSMAUG00000004817) H3f4 (ENSMAUG00000010700) ENSMAUG00000010470 H2ac25 (ENSMAUG00000010628) H2bc26-ps (ENSMAUG00000010794) H2bc27 (ENSMAUG00000010540) ENSMAUG00000021471 ENSMAUG00000020727 Btnl10 (ENSMAUG00000021399) Zfp39 (ENSMAUG00000001536) ENSMAUG00000002461 ENSMAUG00000002837 Fam183b (ENSMAUG00000021857) ENSMAUG00000010641 Chinese hamster chok1gshd MODERN SPECIES 229 Nlrp3 (ENSCGRG00001021138) ENSCGRG00001021260 Zkscan17 (ENSCGRG00001020767) Zfp867 (ENSCGRG00001016010) Jmjd4 (ENSCGRG00001013252) Snap47 (ENSCGRG00001004500) Prss38 (ENSCGRG00001019522) Wnt9a (ENSCGRG00001016816) Wnt3a (ENSCGRG00001015217) #13 Arf1 (ENSCGRG00001013922) #14 2310033P09Rik (ENSCGRG00001021154) #15 Mrpl55 (ENSCGRG00001020506) ENSCGRG00001016847 #18 Gjc2 (ENSCGRG00001008796) #19 Iba57 (ENSCGRG00001007484) #20 Obscn (ENSCGRG00001023809) #22 Trim11 (ENSCGRG00001016227) Trim17 (ENSCGRG00001017038) ENSCGRG00001009610 H2bc27 (ENSCGRG00001005703) H2bc26-ps (ENSCGRG00001013795) H2ac25 (ENSCGRG00001008750) ENSCGRG00001017170 ENSCGRG00001015992 Zfp39 (ENSCGRG00001002406) 2810021J22Rik (ENSCGRG00001001041) ENSCGRG00001012941 ENSCGRG00001007292 ENSCGRG00001008023 Fam183b (ENSCGRG00001024113) Or2t44 (ENSCGRG00001022873) Cricetidae_B ANCESTRAL SPECIES ENSGT01090000260044.A.b.a.a.a.b ENSGT00940000162415 ENSGT00940000161967 ENSGT00950000182755.b.a.a.a.a.b ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000163997 ENSGT00940000160177 ENSGT00940000159981.e.a ENSGT00940000159981.e.b ENSGT01060000248581.C.a.b.a.a ENSGT00390000006224 ENSGT01090000260018.C.b.a.a ENSGT01090000260018.C.a Northern American deer mouse MODERN SPECIES 21 Nlrp3 (ENSPEMG00000018349) Zkscan17 (ENSPEMG00000028678) Zfp867 (ENSPEMG00000015201) Jmjd4 (ENSPEMG00000025158) Snap47 (ENSPEMG00000003186) Prss38 (ENSPEMG00000000315) ENSPEMG00000026476 Wnt9a (ENSPEMG00000008917) Wnt3a (ENSPEMG00000014970) #13 Arf1 (ENSPEMG00000024884) #14 2310033P09Rik (ENSPEMG00000016726) #15 Mrpl55 (ENSPEMG00000010381) Guk1 (ENSPEMG00000007733) #18 Gjc2 (ENSPEMG00000015748) #19 Iba57 (ENSPEMG00000029448) #20 Obscn (ENSPEMG00000017360) #22 Trim11 (ENSPEMG00000013300) Trim17 (ENSPEMG00000012957) H3f4 (ENSPEMG00000028465) H2ac25 (ENSPEMG00000025825) H2bc26-ps (ENSPEMG00000029564) H2bc27 (ENSPEMG00000029370) ENSPEMG00000024885 Btnl10 (ENSPEMG00000010544) Zfp39 (ENSPEMG00000009428) 2810021J22Rik (ENSPEMG00000028205) Gm12258 (ENSPEMG00000029020) ENSPEMG00000027643 ENSPEMG00000025827 Fam183b (ENSPEMG00000020878) Or2t44 (ENSPEMG00000022635) Prairie vole MODERN SPECIES 15 ENSMOCG00000004021 ENSMOCG00000007500 Zkscan17 (ENSMOCG00000021773) Zfp867 (ENSMOCG00000017475) Jmjd4 (ENSMOCG00000019517) Snap47 (ENSMOCG00000021698) Prss38 (ENSMOCG00000020492) Wnt9a (ENSMOCG00000022972) Wnt3a (ENSMOCG00000022805) #13 Arf1 (ENSMOCG00000005344) #14 2310033P09Rik (ENSMOCG00000020633) #15 Mrpl55 (ENSMOCG00000022355) Guk1 (ENSMOCG00000020868) #18 Gjc2 (ENSMOCG00000015445) #19 Iba57 (ENSMOCG00000019048) #20 Obscn (ENSMOCG00000009245) #22 Trim11 (ENSMOCG00000021941) Trim17 (ENSMOCG00000016644) H3f4 (ENSMOCG00000002973) H2ac25 (ENSMOCG00000002942) H2bc26-ps (ENSMOCG00000003080) H2bc27 (ENSMOCG00000002061) Rnf187 (ENSMOCG00000021645) Btnl10 (ENSMOCG00000005486) Zfp39 (ENSMOCG00000017961) ENSMOCG00000003250 ENSMOCG00000006893 Fam183b (ENSMOCG00000013813) ENSMOCG00000011805 ENSMOCG00000002169 Trim58 (ENSMOCG00000019086) Tree shrew DUPLICATION Tree shrew DUPLICATION Tree shrew MODERN SPECIES 3043 ENSTBEG00000011028 #22 ENSTBEG00000011545 ENSTBEG00000011639 #22 Tree shrew MODERN SPECIES 3043 ENSTBEG00000011028 #22 ENSTBEG00000011545 ENSTBEG00000011639 #22 Tree shrew MODERN SPECIES 9772 ENSTBEG00000003110 #22 Laurasiatheria ANCESTRAL SPECIES 30 ENSGT01090000260044.A.b.a.a.a.b ENSGT01100000263548.b.a.a.a.a.a ENSGT00940000162415 ENSGT00940000161967 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000163997 Eulipotyphla ANCESTRAL SPECIES 2563 ENSGT00940000154756.A #22 ENSGT00390000016274 Common shrew DUPLICATION Common shrew MODERN SPECIES 3800 ENSSARG00000009329 #22 ENSSARG00000009473 #22 Common shrew MODERN SPECIES 3800 ENSSARG00000009329 #22 ENSSARG00000009473 #22 Hedgehog MODERN SPECIES 5498 ENSEEUG00000012792 #22 ENSEEUG00000013297 Laurasiatheria_a ANCESTRAL SPECIES 23 ENSGT01090000260044.A.b.a.a.a.b ENSGT01100000263548.b.a.a.a.a.a ENSGT00940000162415 ENSGT00940000161967 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000163997 Laurasiatheria_b ANCESTRAL SPECIES 24 ENSGT01090000260044.A.b.a.a.a.b ENSGT01100000263548.b.a.a.a.a.a ENSGT00940000162415 ENSGT00940000161967 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 Carnivora ANCESTRAL SPECIES 28 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000163997 ENSGT01030000234553.b.b.d.c.a ENSGT01090000259995.a.a.b.a.b.a ENSGT00940000161967 ENSGT00940000162415 ENSGT01100000263548.b.a.a.a.a.a ENSGT01090000260044.A.b.a.a.a.b Felidae ANCESTRAL SPECIES 6 ENSGT01090000260018.A.a.b.a ENSGT00940000160338 ENSGT00940000162750 ENSGT00530000063632.B ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000158017.d ENSGT01090000259995.a.a.b.a.b.a ENSGT00940000161967 ENSGT00940000162415 ENSGT01100000263548.b.a.a.a.a.a ENSGT01090000260044.A.b.a.a.a.b ENSGT01090000260044.A.b.a.a.a.a.a ENSGT01100000263486.a.b.a.a.a.a.b ENSGT01100000263548.a.b.b Panthera ANCESTRAL SPECIES 6 ENSGT01090000260018.A.a.b.a ENSGT00940000160338 ENSGT00940000162750 ENSGT00530000063632.B ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT00390000009510 ENSGT00940000161967 ENSGT00940000162415 ENSGT01100000263548.b.a.a.a.a.a ENSGT01090000260044.A.b.a.a.a.b ENSGT01090000260044.A.b.a.a.a.a.a ENSGT01100000263486.a.b.a.a.a.a.b ENSGT01100000263548.a.b.b ENSGT01100000263486.a.b.b ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b ENSGT00940000158134.A Panthera_a ANCESTRAL SPECIES 3 ENSGT01090000260018.A.a.b.a ENSGT00940000160338 ENSGT00940000162750 ENSGT00530000063632.B ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT00390000009510 ENSGT00940000161967 ENSGT00940000162415 ENSGT01100000263548.b.a.a.a.a.a ENSGT01090000260044.A.b.a.a.a.b ENSGT01090000260044.A.b.a.a.a.a.a ENSGT01100000263486.a.b.a.a.a.a.b ENSGT01100000263548.a.b.b ENSGT01100000263486.a.b.b ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b ENSGT00940000158134.A lion DUPLICATION lion MODERN SPECIES ENSPLOG00000002906 ZFP62 (ENSPLOG00000002927) MGAT1 (ENSPLOG00000002940) JMJD4 (ENSPLOG00000002956) SNAP47 (ENSPLOG00000002987) ENSPLOG00000003011 PRSS38 (ENSPLOG00000003023) WNT9A (ENSPLOG00000000004) WNT3A (ENSPLOG00000000013) #13 ARF1 (ENSPLOG00000000016) #14 C1orf35 (ENSPLOG00000000019) #15 MRPL55 (ENSPLOG00000000024) GUK1 (ENSPLOG00000000033) #18 GJC2 (ENSPLOG00000000039) #19 IBA57 (ENSPLOG00000000043) #20 ENSPLOG00000000051 #22 ENSPLOG00000000078 #22 TRIM11 (ENSPLOG00000000094) TRIM17 (ENSPLOG00000000102) H2AC25 (ENSPLOG00000000118) H2BC26 (ENSPLOG00000000122) RNF187 (ENSPLOG00000000130) ENSPLOG00000000153 ENSPLOG00000000167 ENSPLOG00000000176 ZNF496 (ENSPLOG00000000182) NLRP3 (ENSPLOG00000000198) ENSPLOG00000000215 OR2B11 (ENSPLOG00000000220) ENSPLOG00000000228 OR2C3 (ENSPLOG00000000232) lion MODERN SPECIES ZFP62 (ENSPLOG00000002927) MGAT1 (ENSPLOG00000002940) JMJD4 (ENSPLOG00000002956) SNAP47 (ENSPLOG00000002987) ENSPLOG00000003011 PRSS38 (ENSPLOG00000003023) WNT9A (ENSPLOG00000000004) WNT3A (ENSPLOG00000000013) #13 ARF1 (ENSPLOG00000000016) #14 C1orf35 (ENSPLOG00000000019) #15 MRPL55 (ENSPLOG00000000024) GUK1 (ENSPLOG00000000033) #18 GJC2 (ENSPLOG00000000039) #19 IBA57 (ENSPLOG00000000043) #20 ENSPLOG00000000051 #22 ENSPLOG00000000078 #22 TRIM11 (ENSPLOG00000000094) TRIM17 (ENSPLOG00000000102) H2AC25 (ENSPLOG00000000118) H2BC26 (ENSPLOG00000000122) RNF187 (ENSPLOG00000000130) ENSPLOG00000000153 ENSPLOG00000000167 ENSPLOG00000000176 ZNF496 (ENSPLOG00000000182) NLRP3 (ENSPLOG00000000198) ENSPLOG00000000215 OR2B11 (ENSPLOG00000000220) ENSPLOG00000000228 OR2C3 (ENSPLOG00000000232) GCSAML (ENSPLOG00000000252) Caniformia ANCESTRAL SPECIES 34 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000163997 ENSGT01030000234553.b.b.d.c.a Canidae ANCESTRAL SPECIES 64 ENSGT01090000259995.b.b.a.a.b.i.a.a.a.b ENSGT01090000259995.b.b.a.a.b.j.b ENSGT00940000162666 ENSGT01090000260086.E.b ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815.c #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000163997 Canis_lupus DUPLICATION Canis_lupus ANCESTRAL SPECIES 51 ENSGT00390000000053.t ENSGT01090000259995.b.b.a.a.b.j.b ENSGT00940000162666 ENSGT01090000260086.E.b ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b.jb #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815.c #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A.ed #22 ENSGT00940000154756.A.fd #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT00940000160426 ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000163997.g ENSGT00940000163997.h Dog MODERN SPECIES 5 OR2L3B (ENSCAFG00845008326) ENSCAFG00845008294 ENSCAFG00845008271 ENSCAFG00845008246 JMJD4 (ENSCAFG00845008215) SNAP47 (ENSCAFG00845008129) PRSS38 (ENSCAFG00845008050) WNT9A (ENSCAFG00845008006) WNT3A (ENSCAFG00845007960) #13 ARF1 (ENSCAFG00845007924) #14 C1orf35 (ENSCAFG00845007876) #15 MRPL55 (ENSCAFG00845007834) GUK1 (ENSCAFG00845007785) #18 GJC2 (ENSCAFG00845007738) #19 IBA57 (ENSCAFG00845007710) #20 ENSCAFG00845007646 #22 ENSCAFG00845007619 #22 ENSCAFG00845007586 #22 ENSCAFG00845007457 #22 TRIM17 (ENSCAFG00845007329) HIST3H2A (ENSCAFG00845007204) H2BC26 (ENSCAFG00845007167) ENSCAFG00845007128 ENSCAFG00845007077 ENSCAFG00845006991 ENSCAFG00845006907 ENSCAFG00845006866 ENSCAFG00845006842 ENSCAFG00845006817 Dingo MODERN SPECIES 372 ENSCAFG00020005648 ENSCAFG00020005654 OR13G1 (ENSCAFG00020005659) OR6F1 (ENSCAFG00020005660) ENSCAFG00020005667 JMJD4 (ENSCAFG00020005670) SNAP47 (ENSCAFG00020005687) PRSS38 (ENSCAFG00020005690) WNT9A (ENSCAFG00020005694) WNT3A (ENSCAFG00020005706) #13 ARF1 (ENSCAFG00020005724) #14 ENSCAFG00020005738 #15 MRPL55 (ENSCAFG00020005742) ENSCAFG00020005747 #18 IBA57 (ENSCAFG00020005762) #20 ENSCAFG00020005770 #22 ENSCAFG00020005782 #22 ENSCAFG00020005800 #22 ENSCAFG00020005812 #22 ENSCAFG00020005814 #22 ENSCAFG00020005817 #22 ENSCAFG00020005824 #22 TRIM11 (ENSCAFG00020005850) TRIM17 (ENSCAFG00020005854) ENSCAFG00020005861 H2BC26 (ENSCAFG00020005888) ENSCAFG00020005896 RNF187 (ENSCAFG00020005898) ENSCAFG00020005906 ENSCAFG00020005924 ENSCAFG00020005930 Canis_lupus ANCESTRAL SPECIES 51 ENSGT01090000259995.b.b.a.a.b.j.b ENSGT00940000162666 ENSGT01090000260086.E.b ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b.jb #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815.c #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A.ed #22 ENSGT00940000154756.A.fd #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT00940000160426 ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000163997.g ENSGT00940000163997.h Dingo DUPLICATION Dingo DUPLICATION Dingo DUPLICATION Dingo DUPLICATION Dingo DUPLICATION Dingo MODERN SPECIES 372 SNAP47 (ENSCAFG00020005687) PRSS38 (ENSCAFG00020005690) WNT9A (ENSCAFG00020005694) WNT3A (ENSCAFG00020005706) #13 ARF1 (ENSCAFG00020005724) #14 ENSCAFG00020005738 #15 MRPL55 (ENSCAFG00020005742) ENSCAFG00020005747 #18 IBA57 (ENSCAFG00020005762) #20 ENSCAFG00020005770 #22 ENSCAFG00020005782 #22 ENSCAFG00020005800 #22 ENSCAFG00020005812 #22 ENSCAFG00020005814 #22 ENSCAFG00020005817 #22 ENSCAFG00020005824 #22 TRIM11 (ENSCAFG00020005850) TRIM17 (ENSCAFG00020005854) ENSCAFG00020005861 H2BC26 (ENSCAFG00020005888) ENSCAFG00020005896 RNF187 (ENSCAFG00020005898) ENSCAFG00020005906 ENSCAFG00020005924 ENSCAFG00020005930 Dingo MODERN SPECIES 372 ENSCAFG00020005667 JMJD4 (ENSCAFG00020005670) SNAP47 (ENSCAFG00020005687) PRSS38 (ENSCAFG00020005690) WNT9A (ENSCAFG00020005694) WNT3A (ENSCAFG00020005706) #13 ARF1 (ENSCAFG00020005724) #14 ENSCAFG00020005738 #15 MRPL55 (ENSCAFG00020005742) ENSCAFG00020005747 #18 IBA57 (ENSCAFG00020005762) #20 ENSCAFG00020005770 #22 ENSCAFG00020005782 #22 ENSCAFG00020005800 #22 ENSCAFG00020005812 #22 ENSCAFG00020005814 #22 ENSCAFG00020005817 #22 ENSCAFG00020005824 #22 TRIM11 (ENSCAFG00020005850) TRIM17 (ENSCAFG00020005854) ENSCAFG00020005861 H2BC26 (ENSCAFG00020005888) ENSCAFG00020005896 RNF187 (ENSCAFG00020005898) ENSCAFG00020005906 ENSCAFG00020005924 ENSCAFG00020005930 Dingo MODERN SPECIES 372 JMJD4 (ENSCAFG00020005670) SNAP47 (ENSCAFG00020005687) PRSS38 (ENSCAFG00020005690) WNT9A (ENSCAFG00020005694) WNT3A (ENSCAFG00020005706) #13 ARF1 (ENSCAFG00020005724) #14 ENSCAFG00020005738 #15 MRPL55 (ENSCAFG00020005742) ENSCAFG00020005747 #18 IBA57 (ENSCAFG00020005762) #20 ENSCAFG00020005770 #22 ENSCAFG00020005782 #22 ENSCAFG00020005800 #22 ENSCAFG00020005812 #22 ENSCAFG00020005814 #22 ENSCAFG00020005817 #22 ENSCAFG00020005824 #22 TRIM11 (ENSCAFG00020005850) TRIM17 (ENSCAFG00020005854) ENSCAFG00020005861 H2BC26 (ENSCAFG00020005888) ENSCAFG00020005896 RNF187 (ENSCAFG00020005898) ENSCAFG00020005906 ENSCAFG00020005924 ENSCAFG00020005930 Dingo MODERN SPECIES 372 ENSCAFG00020005654 OR13G1 (ENSCAFG00020005659) OR6F1 (ENSCAFG00020005660) ENSCAFG00020005667 JMJD4 (ENSCAFG00020005670) SNAP47 (ENSCAFG00020005687) PRSS38 (ENSCAFG00020005690) WNT9A (ENSCAFG00020005694) WNT3A (ENSCAFG00020005706) #13 ARF1 (ENSCAFG00020005724) #14 ENSCAFG00020005738 #15 MRPL55 (ENSCAFG00020005742) ENSCAFG00020005747 #18 IBA57 (ENSCAFG00020005762) #20 ENSCAFG00020005770 #22 ENSCAFG00020005782 #22 ENSCAFG00020005800 #22 ENSCAFG00020005812 #22 ENSCAFG00020005814 #22 ENSCAFG00020005817 #22 ENSCAFG00020005824 #22 TRIM11 (ENSCAFG00020005850) TRIM17 (ENSCAFG00020005854) ENSCAFG00020005861 H2BC26 (ENSCAFG00020005888) ENSCAFG00020005896 RNF187 (ENSCAFG00020005898) ENSCAFG00020005906 ENSCAFG00020005924 ENSCAFG00020005930 Dingo MODERN SPECIES 372 OR13G1 (ENSCAFG00020005659) OR6F1 (ENSCAFG00020005660) ENSCAFG00020005667 JMJD4 (ENSCAFG00020005670) SNAP47 (ENSCAFG00020005687) PRSS38 (ENSCAFG00020005690) WNT9A (ENSCAFG00020005694) WNT3A (ENSCAFG00020005706) #13 ARF1 (ENSCAFG00020005724) #14 ENSCAFG00020005738 #15 MRPL55 (ENSCAFG00020005742) ENSCAFG00020005747 #18 IBA57 (ENSCAFG00020005762) #20 ENSCAFG00020005770 #22 ENSCAFG00020005782 #22 ENSCAFG00020005800 #22 ENSCAFG00020005812 #22 ENSCAFG00020005814 #22 ENSCAFG00020005817 #22 ENSCAFG00020005824 #22 TRIM11 (ENSCAFG00020005850) TRIM17 (ENSCAFG00020005854) ENSCAFG00020005861 H2BC26 (ENSCAFG00020005888) ENSCAFG00020005896 RNF187 (ENSCAFG00020005898) ENSCAFG00020005906 ENSCAFG00020005924 ENSCAFG00020005930 Dingo MODERN SPECIES 372 OR6F1 (ENSCAFG00020005660) ENSCAFG00020005667 JMJD4 (ENSCAFG00020005670) SNAP47 (ENSCAFG00020005687) PRSS38 (ENSCAFG00020005690) WNT9A (ENSCAFG00020005694) WNT3A (ENSCAFG00020005706) #13 ARF1 (ENSCAFG00020005724) #14 ENSCAFG00020005738 #15 MRPL55 (ENSCAFG00020005742) ENSCAFG00020005747 #18 IBA57 (ENSCAFG00020005762) #20 ENSCAFG00020005770 #22 ENSCAFG00020005782 #22 ENSCAFG00020005800 #22 ENSCAFG00020005812 #22 ENSCAFG00020005814 #22 ENSCAFG00020005817 #22 ENSCAFG00020005824 #22 TRIM11 (ENSCAFG00020005850) TRIM17 (ENSCAFG00020005854) ENSCAFG00020005861 H2BC26 (ENSCAFG00020005888) ENSCAFG00020005896 RNF187 (ENSCAFG00020005898) ENSCAFG00020005906 ENSCAFG00020005924 ENSCAFG00020005930 Dog DUPLICATION Dog DUPLICATION Dog MODERN SPECIES 5 ENSCAFG00845008246 JMJD4 (ENSCAFG00845008215) SNAP47 (ENSCAFG00845008129) PRSS38 (ENSCAFG00845008050) WNT9A (ENSCAFG00845008006) WNT3A (ENSCAFG00845007960) #13 ARF1 (ENSCAFG00845007924) #14 C1orf35 (ENSCAFG00845007876) #15 MRPL55 (ENSCAFG00845007834) GUK1 (ENSCAFG00845007785) #18 GJC2 (ENSCAFG00845007738) #19 IBA57 (ENSCAFG00845007710) #20 ENSCAFG00845007646 #22 ENSCAFG00845007619 #22 ENSCAFG00845007586 #22 ENSCAFG00845007457 #22 TRIM17 (ENSCAFG00845007329) HIST3H2A (ENSCAFG00845007204) H2BC26 (ENSCAFG00845007167) ENSCAFG00845007128 ENSCAFG00845007077 ENSCAFG00845006991 ENSCAFG00845006907 ENSCAFG00845006866 ENSCAFG00845006842 ENSCAFG00845006817 Dog MODERN SPECIES 5 ENSCAFG00845008271 ENSCAFG00845008246 JMJD4 (ENSCAFG00845008215) SNAP47 (ENSCAFG00845008129) PRSS38 (ENSCAFG00845008050) WNT9A (ENSCAFG00845008006) WNT3A (ENSCAFG00845007960) #13 ARF1 (ENSCAFG00845007924) #14 C1orf35 (ENSCAFG00845007876) #15 MRPL55 (ENSCAFG00845007834) GUK1 (ENSCAFG00845007785) #18 GJC2 (ENSCAFG00845007738) #19 IBA57 (ENSCAFG00845007710) #20 ENSCAFG00845007646 #22 ENSCAFG00845007619 #22 ENSCAFG00845007586 #22 ENSCAFG00845007457 #22 TRIM17 (ENSCAFG00845007329) HIST3H2A (ENSCAFG00845007204) H2BC26 (ENSCAFG00845007167) ENSCAFG00845007128 ENSCAFG00845007077 ENSCAFG00845006991 ENSCAFG00845006907 ENSCAFG00845006866 ENSCAFG00845006842 ENSCAFG00845006817 Dog MODERN SPECIES 5 ENSCAFG00845008294 ENSCAFG00845008271 ENSCAFG00845008246 JMJD4 (ENSCAFG00845008215) SNAP47 (ENSCAFG00845008129) PRSS38 (ENSCAFG00845008050) WNT9A (ENSCAFG00845008006) WNT3A (ENSCAFG00845007960) #13 ARF1 (ENSCAFG00845007924) #14 C1orf35 (ENSCAFG00845007876) #15 MRPL55 (ENSCAFG00845007834) GUK1 (ENSCAFG00845007785) #18 GJC2 (ENSCAFG00845007738) #19 IBA57 (ENSCAFG00845007710) #20 ENSCAFG00845007646 #22 ENSCAFG00845007619 #22 ENSCAFG00845007586 #22 ENSCAFG00845007457 #22 TRIM17 (ENSCAFG00845007329) HIST3H2A (ENSCAFG00845007204) H2BC26 (ENSCAFG00845007167) ENSCAFG00845007128 ENSCAFG00845007077 ENSCAFG00845006991 ENSCAFG00845006907 ENSCAFG00845006866 ENSCAFG00845006842 ENSCAFG00845006817 Caniformia_b DUPLICATION Caniformia_b DUPLICATION Caniformia_b ANCESTRAL SPECIES ENSGT00940000154756.A.gd.a #22 Mustelinae ANCESTRAL SPECIES ENSGT00940000154756.A.gd.a #22 Ferret MODERN SPECIES 525 JMJD4 (ENSMPUG00000000927) SNAP47 (ENSMPUG00000000929) PRSS38 (ENSMPUG00000000932) WNT9A (ENSMPUG00000000947) WNT3A (ENSMPUG00000000960) #13 ARF1 (ENSMPUG00000000962) #14 C1orf35 (ENSMPUG00000000996) #15 MRPL55 (ENSMPUG00000001004) GUK1 (ENSMPUG00000001011) #18 IBA57 (ENSMPUG00000001035) #20 ENSMPUG00000001039 #22 ENSMPUG00000001077 #22 ENSMPUG00000001079 TRIM11 (ENSMPUG00000001081) H3-4 (ENSMPUG00000018529) H2AC25 (ENSMPUG00000018534) H2BC26 (ENSMPUG00000018539) ENSMPUG00000001083 ENSMPUG00000001085 ENSMPUG00000001088 ENSMPUG00000018546 ENSMPUG00000001090 ENSMPUG00000001091 Caniformia_b ANCESTRAL SPECIES 41 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A.gd.b #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000163997 ENSGT01030000234553.b.b.d.c.a.d Mustelinae ANCESTRAL SPECIES 159 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A.gd.b #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000163997 ENSGT01030000234553.b.b.d.c.a.d American mink DUPLICATION American mink MODERN SPECIES 522 JMJD4 (ENSNVIG00000023741) SNAP47 (ENSNVIG00000023746) PRSS38 (ENSNVIG00000023749) WNT9A (ENSNVIG00000023751) WNT3A (ENSNVIG00000023755) #13 ARF1 (ENSNVIG00000000852) #14 C1orf35 (ENSNVIG00000000876) #15 MRPL55 (ENSNVIG00000000896) GUK1 (ENSNVIG00000000938) #18 GJC2 (ENSNVIG00000001001) #19 IBA57 (ENSNVIG00000001008) #20 ENSNVIG00000001052 #22 ENSNVIG00000001101 #22 TRIM11 (ENSNVIG00000001136) TRIM17 (ENSNVIG00000001165) H3-4 (ENSNVIG00000001199) H2AC25 (ENSNVIG00000001203) H2BC26 (ENSNVIG00000001207) ENSNVIG00000001218 American mink MODERN SPECIES 522 JMJD4 (ENSNVIG00000023741) SNAP47 (ENSNVIG00000023746) PRSS38 (ENSNVIG00000023749) WNT9A (ENSNVIG00000023751) WNT3A (ENSNVIG00000023755) #13 ARF1 (ENSNVIG00000000852) #14 C1orf35 (ENSNVIG00000000876) #15 MRPL55 (ENSNVIG00000000896) GUK1 (ENSNVIG00000000938) #18 GJC2 (ENSNVIG00000001001) #19 IBA57 (ENSNVIG00000001008) #20 ENSNVIG00000001052 #22 ENSNVIG00000001101 #22 TRIM11 (ENSNVIG00000001136) TRIM17 (ENSNVIG00000001165) H3-4 (ENSNVIG00000001199) H2AC25 (ENSNVIG00000001203) H2BC26 (ENSNVIG00000001207) ENSNVIG00000001218 Ferret MODERN SPECIES 525 JMJD4 (ENSMPUG00000000927) SNAP47 (ENSMPUG00000000929) PRSS38 (ENSMPUG00000000932) WNT9A (ENSMPUG00000000947) WNT3A (ENSMPUG00000000960) #13 ARF1 (ENSMPUG00000000962) #14 C1orf35 (ENSMPUG00000000996) #15 MRPL55 (ENSMPUG00000001004) GUK1 (ENSMPUG00000001011) #18 IBA57 (ENSMPUG00000001035) #20 ENSMPUG00000001039 #22 ENSMPUG00000001077 #22 ENSMPUG00000001079 TRIM11 (ENSMPUG00000001081) H3-4 (ENSMPUG00000018529) H2AC25 (ENSMPUG00000018534) H2BC26 (ENSMPUG00000018539) ENSMPUG00000001083 ENSMPUG00000001085 ENSMPUG00000001088 ENSMPUG00000018546 ENSMPUG00000001090 ENSMPUG00000001091 Ursidae ANCESTRAL SPECIES 59 ENSGT01030000234553.b.b.d.c.a.d ENSGT00940000163997 ENSGT00390000009510 ENSGT01100000263474.a.b.b.e.b.a.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT00940000153092.a.a.c.b ENSGT01100000263514.A.e.b ENSGT00940000162155 ENSGT00940000160371 ENSGT00940000154756.A.hd #22 ENSGT00390000006465 #20 ENSGT00940000154756.A.gd.b #22 ENSGT00940000155815 #18 ENSGT00390000010309.a ENSGT00390000005590 #15 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00940000160510 #13 ENSGT00940000159618 ENSGT00940000154494.a ENSGT00950000182843.b ENSGT00940000159380 Ursus ANCESTRAL SPECIES ENSGT00940000154756.A.gd.b #22 Polar bear DUPLICATION Polar bear MODERN SPECIES 314 JMJD4 (ENSUMAG00000001003) ENSUMAG00000000990 SNAP47 (ENSUMAG00000000986) PRSS38 (ENSUMAG00000000967) WNT9A (ENSUMAG00000000953) WNT3A (ENSUMAG00000000923) #13 ARF1 (ENSUMAG00000000918) #14 MRPL55 (ENSUMAG00000000905) GUK1 (ENSUMAG00000000901) #18 ENSUMAG00000000883 #22 ENSUMAG00000000847 #22 TRIM17 (ENSUMAG00000000819) ENSUMAG00000000803 ENSUMAG00000000792 H2BC26 (ENSUMAG00000000733) ENSUMAG00000000715 ENSUMAG00000000704 ENSUMAG00000000672 ENSUMAG00000000653 ENSUMAG00000000615 Polar bear MODERN SPECIES 314 JMJD4 (ENSUMAG00000001003) ENSUMAG00000000990 SNAP47 (ENSUMAG00000000986) PRSS38 (ENSUMAG00000000967) WNT9A (ENSUMAG00000000953) WNT3A (ENSUMAG00000000923) #13 ARF1 (ENSUMAG00000000918) #14 MRPL55 (ENSUMAG00000000905) GUK1 (ENSUMAG00000000901) #18 ENSUMAG00000000883 #22 ENSUMAG00000000847 #22 TRIM17 (ENSUMAG00000000819) ENSUMAG00000000803 ENSUMAG00000000792 H2BC26 (ENSUMAG00000000733) ENSUMAG00000000715 ENSUMAG00000000704 ENSUMAG00000000672 ENSUMAG00000000653 ENSUMAG00000000615 Giant Panda MODERN SPECIES 13 ENSAMEG00000014310 ENSAMEG00000024010 ENSAMEG00000028006 H2BC26 (ENSAMEG00000026668) H2AW (ENSAMEG00000025465) H3-4 (ENSAMEG00000031491) TRIM17 (ENSAMEG00000014312) ENSAMEG00000023964 ENSAMEG00000023921 #20 ENSAMEG00000016258 #22 ENSAMEG00000016280 #18 ENSAMEG00000016292 C1orf35 (ENSAMEG00000016295) #15 ARF1 (ENSAMEG00000030995) #14 WNT3A (ENSAMEG00000004256) #13 WNT9A (ENSAMEG00000027387) PRSS38 (ENSAMEG00000007189) SNAP47 (ENSAMEG00000009252) JMJD4 (ENSAMEG00000018153) ENSAMEG00000029442 ENSAMEG00000030449 ENSAMEG00000029726 OR14C36 (ENSAMEG00000013199) ENSAMEG00000028922 ENSAMEG00000019418 Caniformia_b ANCESTRAL SPECIES ENSGT00940000154756.A.hd #22 Ursidae ANCESTRAL SPECIES 59 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309.a ENSGT00940000155815 #18 ENSGT00940000154756.A.gd.b #22 ENSGT00390000006465 #20 ENSGT00940000154756.A.hd #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000163997 ENSGT01030000234553.b.b.d.c.a.d Ursus ANCESTRAL SPECIES 192 ENSGT00940000159380 ENSGT00940000169575 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309.a ENSGT00940000155815 #18 ENSGT00390000006465 #20 ENSGT00940000154756.A.hd #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.f ENSGT01020000230360.c.b.a.b.b.d ENSGT01100000263474.a.b.b.e.b.a.a ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000163997 ENSGT01030000234553.b.b.d.c.a.d American black bear MODERN SPECIES 2400 ENSUAMG00000013620 #22 TRIM11 (ENSUAMG00000013614) TRIM17 (ENSUAMG00000013611) ENSUAMG00000013599 H2AC25 (ENSUAMG00000013568) H2BC26 (ENSUAMG00000013549) ENSUAMG00000013542 ENSUAMG00000013539 Laurasiatheria_c ANCESTRAL SPECIES 29 ENSGT01100000263486.a.b.a.a.a.a.b ENSGT01090000260044.A.b.a.a.a.b ENSGT00940000162415 ENSGT00940000161967 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT00390000009510 ENSGT00940000163997 ENSGT01030000234553.b.b.d.c.a Equus ANCESTRAL SPECIES 6 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263474.a.b.b.e.b.a.b ENSGT00390000009510 ENSGT00940000163997.m ENSGT01030000234553.b.b.d.d ENSGT00940000161967 ENSGT00940000162415 ENSGT01090000260044.A.b.a.a.a.b ENSGT01100000263486.a.b.a.a.a.a.b ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b.c.a ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b.c.b ENSGT00940000158134.A ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.b ENSGT01060000248581.C.a.b.a.a Horse MODERN SPECIES 5 JMJD4 (ENSECAG00000021407) SNAP47 (ENSECAG00000020954) PRSS38 (ENSECAG00000020942) WNT9A (ENSECAG00000020178) WNT3A (ENSECAG00000028812) #13 ARF1 (ENSECAG00000032327) #14 GUK1 (ENSECAG00000019280) #18 ENSECAG00000059239 #15 GJC2 (ENSECAG00000037673) #19 IBA57 (ENSECAG00000006335) #20 OBSCN (ENSECAG00000016720) #22 TRIM11 (ENSECAG00000016373) TRIM17 (ENSECAG00000039891) ENSECAG00000059949 H2BC26 (ENSECAG00000048080) RNF187 (ENSECAG00000016200) ENSECAG00000040368 ENSECAG00000032464 ENSECAG00000033206 ZNF496 (ENSECAG00000015844) NLRP3 (ENSECAG00000015382) OR2B11 (ENSECAG00000002900) OR2W29 (ENSECAG00000001770) OR2C3F (ENSECAG00000031551) OR2C3 (ENSECAG00000036826) OR2C3D (ENSECAG00000028047) Donkey MODERN SPECIES 29 JMJD4 (ENSEASG00005017516) SNAP47 (ENSEASG00005017519) ENSEASG00005023983 PRSS38 (ENSEASG00005017526) WNT9A (ENSEASG00005017530) WNT3A (ENSEASG00005010564) #13 ENSEASG00005036953 C1orf35 (ENSEASG00005017537) #15 MRPL55 (ENSEASG00005024877) GUK1 (ENSEASG00005017539) #18 GJC2 (ENSEASG00005017541) #19 ENSEASG00005033564 #20 OBSCN (ENSEASG00005017625) #22 TRIM11 (ENSEASG00005017954) TRIM17 (ENSEASG00005017955) ENSEASG00005035131 H2BC26 (ENSEASG00005026831) ENSEASG00005029469 ENSEASG00005017961 ENSEASG00005024868 ENSEASG00005035367 ENSEASG00005017951 ENSEASG00005017964 NLRP3 (ENSEASG00005017967) OR2B11 (ENSEASG00005017975) ENSEASG00005017978 ENSEASG00005038196 ENSEASG00005028368 Chiroptera ANCESTRAL SPECIES 75 ENSGT00940000158134.A ENSGT01090000260044.A.b.a.a.a.b ENSGT00940000162415 ENSGT00940000161967 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT00390000009510 ENSGT00940000163997 ENSGT01030000234553.b.b.d.c.a Megabat MODERN SPECIES 1486 OBSCN (ENSPVAG00000009411) #22 Microchiroptera ANCESTRAL SPECIES 63 ENSGT00940000158134.A ENSGT01090000260044.A.b.a.a.a.b ENSGT00940000162415 ENSGT00940000161967 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT00390000009510 ENSGT00940000163997 ENSGT01030000234553.b.b.d.c.a Greater horseshoe bat MODERN SPECIES 16 GRM6 (ENSRFEG00010020725) ZNF454 (ENSRFEG00010020708) ZFP2 (ENSRFEG00010020696) ENSRFEG00010020667 JMJD4 (ENSRFEG00010020639) SNAP47 (ENSRFEG00010020620) PRSS38 (ENSRFEG00010020586) WNT9A (ENSRFEG00010020564) WNT3A (ENSRFEG00010020529) #13 ENSRFEG00010020502 #14 ENSRFEG00010020459 #15 MRPL55 (ENSRFEG00010020427) ENSRFEG00010020344 #18 GJC2 (ENSRFEG00010020305) #19 IBA57 (ENSRFEG00010020284) #20 OBSCN (ENSRFEG00010012968) #22 TRIM11 (ENSRFEG00010012738) TRIM17 (ENSRFEG00010012551) H3-4 (ENSRFEG00010012529) H2AC25 (ENSRFEG00010012511) RNF187 (ENSRFEG00010012412) ENSRFEG00010012392 ENSRFEG00010012356 ZNF496 (ENSRFEG00010012279) ENSRFEG00010012199 NLRP3 (ENSRFEG00010011921) OR2B11 (ENSRFEG00010011877) GCSAML (ENSRFEG00010011703) OR2G2 (ENSRFEG00010011520) OR2G3 (ENSRFEG00010011480) OR14K1 (ENSRFEG00010011310) Microbat DUPLICATION Microbat DUPLICATION Microbat MODERN SPECIES 1239 OR2B11 (ENSMLUG00000014384) NLRP3 (ENSMLUG00000014375) ZNF496 (ENSMLUG00000026878) ENSMLUG00000024170 ENSMLUG00000009770 SNAP47 (ENSMLUG00000013515) PRSS38 (ENSMLUG00000012972) WNT9A (ENSMLUG00000013086) ENSMLUG00000026050 #13 ENSMLUG00000007020 #14 MRPL55 (ENSMLUG00000007037) GUK1 (ENSMLUG00000013049) #18 GJC2 (ENSMLUG00000006940) #19 IBA57 (ENSMLUG00000008724) #20 ENSMLUG00000025341 #22 ENSMLUG00000013117 #22 ENSMLUG00000027104 #22 TRIM11 (ENSMLUG00000009420) RNF187 (ENSMLUG00000002610) TRIM58 (ENSMLUG00000004402) OR2W3 (ENSMLUG00000005916) ENSMLUG00000027552 SH3BP5L (ENSMLUG00000002392) ZNF692 (ENSMLUG00000002398) Microbat MODERN SPECIES 1239 OR2B11 (ENSMLUG00000014384) NLRP3 (ENSMLUG00000014375) ZNF496 (ENSMLUG00000026878) ENSMLUG00000024170 ENSMLUG00000009770 SNAP47 (ENSMLUG00000013515) PRSS38 (ENSMLUG00000012972) WNT9A (ENSMLUG00000013086) ENSMLUG00000026050 #13 ENSMLUG00000007020 #14 MRPL55 (ENSMLUG00000007037) GUK1 (ENSMLUG00000013049) #18 GJC2 (ENSMLUG00000006940) #19 IBA57 (ENSMLUG00000008724) #20 ENSMLUG00000025341 #22 ENSMLUG00000013117 #22 ENSMLUG00000027104 #22 TRIM11 (ENSMLUG00000009420) RNF187 (ENSMLUG00000002610) TRIM58 (ENSMLUG00000004402) OR2W3 (ENSMLUG00000005916) ENSMLUG00000027552 SH3BP5L (ENSMLUG00000002392) ZNF692 (ENSMLUG00000002398) Microbat MODERN SPECIES 1239 NLRP3 (ENSMLUG00000014375) ZNF496 (ENSMLUG00000026878) ENSMLUG00000024170 ENSMLUG00000009770 SNAP47 (ENSMLUG00000013515) PRSS38 (ENSMLUG00000012972) WNT9A (ENSMLUG00000013086) ENSMLUG00000026050 #13 ENSMLUG00000007020 #14 MRPL55 (ENSMLUG00000007037) GUK1 (ENSMLUG00000013049) #18 GJC2 (ENSMLUG00000006940) #19 IBA57 (ENSMLUG00000008724) #20 ENSMLUG00000025341 #22 ENSMLUG00000013117 #22 ENSMLUG00000027104 #22 TRIM11 (ENSMLUG00000009420) RNF187 (ENSMLUG00000002610) TRIM58 (ENSMLUG00000004402) OR2W3 (ENSMLUG00000005916) ENSMLUG00000027552 SH3BP5L (ENSMLUG00000002392) ZNF692 (ENSMLUG00000002398) Artiodactyla ANCESTRAL SPECIES 31 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a.b ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT00390000009510 ENSGT00940000163997 Suina ANCESTRAL SPECIES 56 ENSGT01090000260018.A.a.a.a.b.a ENSGT01090000260018.A.a.a.a.b.b ENSGT01090000260018.A.a.a.b.b.s.a.a ENSGT01090000260018.A.a.a.b.a ENSGT01090000260018.A.a.a.b.b.s.a.b ENSGT01090000259995.a.a.a ENSGT00390000010671 ENSGT00730000111648 ENSGT00570000079564 ENSGT00390000018500.a ENSGT01100000263521.a.a.b.a.b.b ENSGT00940000161175 ENSGT00940000163610 ENSGT00940000162327 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT00390000009510 ENSGT00940000163997 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00940000155815 #18 ENSGT00390000010309 ENSGT00390000005590 #15 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00940000160510 #13 ENSGT00940000159618 ENSGT00940000154494.a.b ENSGT00950000182843.b Chacoan peccary MODERN SPECIES 953 SHANK3 (ENSCWAG00000020472) ENSCWAG00000020508 ENSCWAG00000020519 OR4A16 (ENSCWAG00000020533) JMJD4 (ENSCWAG00000020541) SNAP47 (ENSCWAG00000020551) PRSS38 (ENSCWAG00000020558) WNT9A (ENSCWAG00000020570) WNT3A (ENSCWAG00000020576) #13 ARF1 (ENSCWAG00000020582) #14 C1orf35 (ENSCWAG00000020590) #15 MRPL55 (ENSCWAG00000020597) GUK1 (ENSCWAG00000020604) #18 GJC2 (ENSCWAG00000020627) #19 IBA57 (ENSCWAG00000020636) #20 OBSCN (ENSCWAG00000020667) #22 TRIM11 (ENSCWAG00000020837) TRIM17 (ENSCWAG00000020852) H2AC25 (ENSCWAG00000020876) H2BC26 (ENSCWAG00000020885) RNF187 (ENSCWAG00000020893) ENSCWAG00000020902 ENSCWAG00000020908 PGBD2 (ENSCWAG00000008376) ENSCWAG00000008433 ZNF692 (ENSCWAG00000008595) ENSCWAG00000008779 SH3BP5L (ENSCWAG00000008801) LYPD8 (ENSCWAG00000008831) ENSCWAG00000008871 ENSCWAG00000008915 Pig MODERN SPECIES 10 ENSSSCG00000032924 ENSSSCG00000040165 ENSSSCG00000014467 ENSSSCG00000036276 JMJD4 (ENSSSCG00000013983) SNAP47 (ENSSSCG00000013984) ENSSSCG00000057198 ENSSSCG00000048546 WNT9A (ENSSSCG00000024671) WNT3A (ENSSSCG00000029870) #13 ARF1 (ENSSSCG00000013992) #14 C1orf35 (ENSSSCG00000013991) #15 MRPL55 (ENSSSCG00000029050) ENSSSCG00000013990 #18 GJC2 (ENSSSCG00000013989) #19 OBSCN (ENSSSCG00000034569) #22 RNF187 (ENSSSCG00000032994) H2BC26 (ENSSSCG00000061158) H2AC25 (ENSSSCG00000047900) TRIM17 (ENSSSCG00000014000) TRIM11 (ENSSSCG00000035985) ENSSSCG00000059454 ENSSSCG00000026598 ENSSSCG00000013980 ENSSSCG00000039611 PGBD2 (ENSSSCG00000033305) ENSSSCG00000013976 ZNF692 (ENSSSCG00000030672) ZNF672 (ENSSSCG00000013978) SH3BP5L (ENSSSCG00000025900) LYPD8 (ENSSSCG00000013973) Artiodactyla_a ANCESTRAL SPECIES 7 ENSGT01030000234648.a.b.a.b ENSGT00940000162181 ENSGT00940000162743 ENSGT00940000162570 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a.b ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT00390000009510 Camelidae ANCESTRAL SPECIES 109 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a.b ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00940000163657.j ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT00390000009510 Arabian camel MODERN SPECIES 22 ENSCDRG00005007599 LYPD8 (ENSCDRG00005007575) SH3BP5L (ENSCDRG00005007520) ENSCDRG00005007493 ENSCDRG00005007466 JMJD4 (ENSCDRG00005007427) SNAP47 (ENSCDRG00005007395) PRSS38 (ENSCDRG00005007311) WNT9A (ENSCDRG00005007206) WNT3A (ENSCDRG00005007136) #13 ENSCDRG00005007080 MRPL55 (ENSCDRG00005007045) GUK1 (ENSCDRG00005006904) #18 GJC2 (ENSCDRG00005006871) #19 IBA57 (ENSCDRG00005006837) #20 ENSCDRG00005006705 #22 TRIM11 (ENSCDRG00005006600) TRIM17 (ENSCDRG00005006573) H3-4 (ENSCDRG00005006553) H2AC25 (ENSCDRG00005006540) H2BC26 (ENSCDRG00005006528) ENSCDRG00005006516 ENSCDRG00005006493 ENSCDRG00005006375 Artiodactyla_b DUPLICATION Artiodactyla_b DUPLICATION Artiodactyla_b ANCESTRAL SPECIES 8 ENSGT00940000154756.A.kd.a #22 ENSGT00390000009510 ENSGT01100000263474.a.b.b.e.b.a.a ENSGT00940000153092.a.a.c.b ENSGT01100000263514.A.e.b ENSGT00940000162155 ENSGT00940000160371 ENSGT00940000154756.A.ld #22 ENSGT00390000006465 #20 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00940000155815 #18 ENSGT00390000010309 ENSGT00390000005590 #15 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00940000160510 #13 ENSGT00940000159618 Pecora ANCESTRAL SPECIES ENSGT00940000154756.A.kd.a #22 Percora_a ANCESTRAL SPECIES ENSGT00940000154756.A.kd.a #22 Bovidae ANCESTRAL SPECIES ENSGT00940000154756.A.kd.a #22 Bovinae ANCESTRAL SPECIES ENSGT00940000154756.A.kd.a #22 Bos ANCESTRAL SPECIES ENSGT00940000154756.A.kd.a #22 Bos_a ANCESTRAL SPECIES ENSGT00940000154756.A.kd.a #22 Wild yak MODERN SPECIES 610 ZNF354B (ENSBMUG00000013110) JMJD4 (ENSBMUG00000013129) SNAP47 (ENSBMUG00000013160) PRSS38 (ENSBMUG00000013170) WNT9A (ENSBMUG00000013188) WNT3A (ENSBMUG00000013208) #13 ARF1 (ENSBMUG00000013231) #14 C1orf35 (ENSBMUG00000013244) #15 MRPL55 (ENSBMUG00000013341) GUK1 (ENSBMUG00000013370) #18 GJC2 (ENSBMUG00000013389) #19 IBA57 (ENSBMUG00000013400) #20 ENSBMUG00000013430 #22 ENSBMUG00000013541 #22 ENSBMUG00000013557 #22 Cetacea ANCESTRAL SPECIES 1 ENSGT01030000234648.a.b.a.b ENSGT00940000162181 ENSGT00940000162743 ENSGT00940000162570 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a.b ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b.rb.a #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A.kd.a #22 ENSGT00390000009510 ENSGT01100000263474.a.b.b.e.b.a.a ENSGT00940000162155 ENSGT00940000160371 ENSGT01090000259995.a.a.b.a.a.a.a ENSGT00940000162327 ENSGT00940000161175 ENSGT01100000263552.g.b.a.a ENSGT00390000018500.a ENSGT00570000079564 ENSGT00730000111648 ENSGT01090000259995.a.a.a ENSGT00940000162246 ENSGT01090000260045.C.e.a.b ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.b Odontoceti ANCESTRAL SPECIES ENSGT00940000154756.A.kd.a #22 Sperm whale MODERN SPECIES 11 JMJD4 (ENSPCTG00005001672) SNAP47 (ENSPCTG00005001687) PRSS38 (ENSPCTG00005001709) WNT9A (ENSPCTG00005001728) WNT3A (ENSPCTG00005001738) #13 ARF1 (ENSPCTG00005001753) #14 C1orf35 (ENSPCTG00005001766) #15 ENSPCTG00005001780 GUK1 (ENSPCTG00005001793) #18 GJC2 (ENSPCTG00005001808) #19 IBA57 (ENSPCTG00005001814) #20 ENSPCTG00005001819 ENSPCTG00005001826 ENSPCTG00005001837 #22 ENSPCTG00005001845 #22 ENSPCTG00005001857 #22 RNF187 (ENSPCTG00005001868) H2BC26 (ENSPCTG00005001875) H2AC25 (ENSPCTG00005001884) ENSPCTG00005001893 TRIM11 (ENSPCTG00005001906) ENSPCTG00005001917 PGBD2 (ENSPCTG00005001930) ZNF692 (ENSPCTG00005001942) ZNF672 (ENSPCTG00005001950) SH3BP5L (ENSPCTG00005001958) LYPD8 (ENSPCTG00005001972) ENSPCTG00005001987 TRIM58 (ENSPCTG00005002006) ENSPCTG00005002014 OR2G2 (ENSPCTG00005002019) Artiodactyla_b ANCESTRAL SPECIES ENSGT00940000154756.A.kd.b #22 Pecora ANCESTRAL SPECIES ENSGT00940000154756.A.kd.b #22 Percora_a ANCESTRAL SPECIES ENSGT00940000154756.A.kd.b #22 Bovidae ANCESTRAL SPECIES ENSGT00950000183110.a ENSGT00550000075064 ENSGT00730000111029.e.a ENSGT00940000162570 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a.b ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A.kd.b #22 ENSGT00940000154756.A.ld #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT00390000009510 ENSGT00390000008694.b.b.c.b.cb.b ENSGT00940000162743 ENSGT00940000162181 ENSGT01030000234648.a.b.a.b ENSGT00940000162816 ENSGT00940000162715 ENSGT00940000156647 ENSGT00940000158334 Bovinae DUPLICATION Bovinae DUPLICATION Bovinae ANCESTRAL SPECIES 34 ENSGT00950000183110.a ENSGT00550000075064 ENSGT00730000111029.e.a ENSGT00940000162570 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a.b ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A.kd.b.a.a #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT00390000009510 ENSGT00390000008694.b.b.c.b.cb.b ENSGT00940000162743 ENSGT00940000162181 ENSGT01030000234648.a.b.a.b ENSGT00940000162816 ENSGT00940000162715 ENSGT00940000156647 ENSGT00940000158334 ENSGT00940000153503.a.a Bos DUPLICATION Bos ANCESTRAL SPECIES ENSGT00940000154756.A.kd.b.a.a.a #22 Bos_b ANCESTRAL SPECIES ENSGT00940000154756.A.kd.b.a.a.a #22 Cow DUPLICATION Cow MODERN SPECIES 26 ENSBTAG00000052161 ZNF354B (ENSBTAG00000017123) JMJD4 (ENSBTAG00000004191) SNAP47 (ENSBTAG00000004188) PRSS38 (ENSBTAG00000013977) WNT9A (ENSBTAG00000020267) WNT3A (ENSBTAG00000039397) #13 ARF1 (ENSBTAG00000007725) #14 C7H1orf35 (ENSBTAG00000020720) #15 MRPL55 (ENSBTAG00000020721) GUK1 (ENSBTAG00000014775) #18 GJC2 (ENSBTAG00000014916) #19 IBA57 (ENSBTAG00000014918) #20 ENSBTAG00000049190 #22 ENSBTAG00000051744 #22 ENSBTAG00000040028 #22 ENSBTAG00000007820 TRIM11 (ENSBTAG00000039246) TRIM17 (ENSBTAG00000018673) H3-4 (ENSBTAG00000055153) H2AC25 (ENSBTAG00000037964) H2BC26 (ENSBTAG00000053467) RNF187 (ENSBTAG00000019667) ENSBTAG00000052690 ZFP2 (ENSBTAG00000007122) ZNF454 (ENSBTAG00000004262) GRM6 (ENSBTAG00000016187) ENSBTAG00000034973 ZNF879 (ENSBTAG00000038541) ENSBTAG00000055301 ZNF354C (ENSBTAG00000002281) Cow MODERN SPECIES 26 ATP13A1 (ENSBTAG00000007128) ENSBTAG00000052161 ZNF354B (ENSBTAG00000017123) JMJD4 (ENSBTAG00000004191) SNAP47 (ENSBTAG00000004188) PRSS38 (ENSBTAG00000013977) WNT9A (ENSBTAG00000020267) WNT3A (ENSBTAG00000039397) #13 ARF1 (ENSBTAG00000007725) #14 C7H1orf35 (ENSBTAG00000020720) #15 MRPL55 (ENSBTAG00000020721) GUK1 (ENSBTAG00000014775) #18 GJC2 (ENSBTAG00000014916) #19 IBA57 (ENSBTAG00000014918) #20 ENSBTAG00000049190 #22 ENSBTAG00000051744 #22 ENSBTAG00000040028 #22 ENSBTAG00000007820 TRIM11 (ENSBTAG00000039246) TRIM17 (ENSBTAG00000018673) H3-4 (ENSBTAG00000055153) H2AC25 (ENSBTAG00000037964) H2BC26 (ENSBTAG00000053467) RNF187 (ENSBTAG00000019667) ENSBTAG00000052690 ZFP2 (ENSBTAG00000007122) ZNF454 (ENSBTAG00000004262) GRM6 (ENSBTAG00000016187) ENSBTAG00000034973 ZNF879 (ENSBTAG00000038541) ENSBTAG00000055301 Bos_a ANCESTRAL SPECIES 29 ENSGT01050000244941.B.c ENSGT00950000183110.a ENSGT00550000075064 ENSGT00940000162570 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a.b ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A.kd.b.a.a.a #22 ENSGT00390000009312.n.b ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT00390000009510 ENSGT00390000008694.b.b.c.b.cb.b ENSGT00940000162743 ENSGT00940000162181 ENSGT01030000234648.a.b.a.b ENSGT00940000162816 ENSGT00940000162715 ENSGT00940000156647 ENSGT00940000158334 Wild yak MODERN SPECIES 610 ZNF354B (ENSBMUG00000013110) JMJD4 (ENSBMUG00000013129) SNAP47 (ENSBMUG00000013160) PRSS38 (ENSBMUG00000013170) WNT9A (ENSBMUG00000013188) WNT3A (ENSBMUG00000013208) #13 ARF1 (ENSBMUG00000013231) #14 C1orf35 (ENSBMUG00000013244) #15 MRPL55 (ENSBMUG00000013341) GUK1 (ENSBMUG00000013370) #18 GJC2 (ENSBMUG00000013389) #19 IBA57 (ENSBMUG00000013400) #20 ENSBMUG00000013430 #22 ENSBMUG00000013541 #22 ENSBMUG00000013557 #22 Bos ANCESTRAL SPECIES 34 ENSGT00950000183110.a ENSGT00550000075064 ENSGT00730000111029.e.a ENSGT00940000162570 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a.b ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A.kd.b.a.a.b #22 ENSGT00390000009312.n.b ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT00390000009510 ENSGT00390000008694.b.b.c.b.cb.b ENSGT00940000162743 ENSGT00940000162181 ENSGT01030000234648.a.b.a.b ENSGT00940000162816 ENSGT00940000162715 ENSGT00940000156647 ENSGT00940000158334 Bos_b ANCESTRAL SPECIES 36 ENSGT00950000183110.a ENSGT00550000075064 ENSGT00730000111029.e.a ENSGT00940000162570 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a.b ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A.kd.b.a.a.b #22 ENSGT00390000009312.n.b ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT00390000009510 ENSGT00940000162743 ENSGT00940000162181 ENSGT01030000234648.a.b.a.b ENSGT00940000162715 ENSGT00940000156647 ENSGT00940000158334 ENSGT00940000153503.a.a ENSGT00940000153137.a.b.a Cow MODERN SPECIES 26 GMIP (ENSBTAG00000015144) ATP13A1 (ENSBTAG00000007128) ENSBTAG00000052161 ZNF354B (ENSBTAG00000017123) JMJD4 (ENSBTAG00000004191) SNAP47 (ENSBTAG00000004188) PRSS38 (ENSBTAG00000013977) WNT9A (ENSBTAG00000020267) WNT3A (ENSBTAG00000039397) #13 ARF1 (ENSBTAG00000007725) #14 C7H1orf35 (ENSBTAG00000020720) #15 MRPL55 (ENSBTAG00000020721) GUK1 (ENSBTAG00000014775) #18 GJC2 (ENSBTAG00000014916) #19 IBA57 (ENSBTAG00000014918) #20 ENSBTAG00000049190 #22 ENSBTAG00000051744 #22 ENSBTAG00000040028 #22 ENSBTAG00000007820 TRIM11 (ENSBTAG00000039246) TRIM17 (ENSBTAG00000018673) H3-4 (ENSBTAG00000055153) H2AC25 (ENSBTAG00000037964) H2BC26 (ENSBTAG00000053467) RNF187 (ENSBTAG00000019667) ENSBTAG00000052690 ZFP2 (ENSBTAG00000007122) ZNF454 (ENSBTAG00000004262) GRM6 (ENSBTAG00000016187) ENSBTAG00000034973 ZNF879 (ENSBTAG00000038541) American bison DUPLICATION American bison MODERN SPECIES 3165 JMJD4 (ENSBBBG00000016083) SNAP47 (ENSBBBG00000007139) PRSS38 (ENSBBBG00000016108) WNT9A (ENSBBBG00000016116) WNT3A (ENSBBBG00000016145) #13 ARF1 (ENSBBBG00000016170) #14 C1orf35 (ENSBBBG00000016183) #15 MRPL55 (ENSBBBG00000004037) GUK1 (ENSBBBG00000004041) #18 IBA57 (ENSBBBG00000016303) #20 ENSBBBG00000016321 ENSBBBG00000016327 #22 ENSBBBG00000016344 #22 ENSBBBG00000016350 #22 ENSBBBG00000016357 #22 ENSBBBG00000016369 #22 TRIM11 (ENSBBBG00000016378) TRIM17 (ENSBBBG00000016399) H3-4 (ENSBBBG00000004059) American bison MODERN SPECIES 3165 ZNF354B (ENSBBBG00000016063) JMJD4 (ENSBBBG00000016083) SNAP47 (ENSBBBG00000007139) PRSS38 (ENSBBBG00000016108) WNT9A (ENSBBBG00000016116) WNT3A (ENSBBBG00000016145) #13 ARF1 (ENSBBBG00000016170) #14 C1orf35 (ENSBBBG00000016183) #15 MRPL55 (ENSBBBG00000004037) GUK1 (ENSBBBG00000004041) #18 IBA57 (ENSBBBG00000016303) #20 ENSBBBG00000016321 ENSBBBG00000016327 #22 ENSBBBG00000016344 #22 ENSBBBG00000016350 #22 ENSBBBG00000016357 #22 ENSBBBG00000016369 #22 TRIM11 (ENSBBBG00000016378) TRIM17 (ENSBBBG00000016399) H3-4 (ENSBBBG00000004059) Bovinae ANCESTRAL SPECIES ENSGT00940000154756.A.kd.b.a.b #22 Bos ANCESTRAL SPECIES ENSGT00940000154756.A.kd.b.a.b #22 Bos_a ANCESTRAL SPECIES ENSGT00940000154756.A.kd.b.a.b #22 Wild yak MODERN SPECIES 610 ZNF354B (ENSBMUG00000013110) JMJD4 (ENSBMUG00000013129) SNAP47 (ENSBMUG00000013160) PRSS38 (ENSBMUG00000013170) WNT9A (ENSBMUG00000013188) WNT3A (ENSBMUG00000013208) #13 ARF1 (ENSBMUG00000013231) #14 C1orf35 (ENSBMUG00000013244) #15 MRPL55 (ENSBMUG00000013341) GUK1 (ENSBMUG00000013370) #18 GJC2 (ENSBMUG00000013389) #19 IBA57 (ENSBMUG00000013400) #20 ENSBMUG00000013430 #22 ENSBMUG00000013541 #22 ENSBMUG00000013557 #22 Bovinae ANCESTRAL SPECIES ENSGT00940000154756.A.kd.b.b #22 American bison MODERN SPECIES 3165 ENSBBBG00000016056 ZNF354B (ENSBBBG00000016063) JMJD4 (ENSBBBG00000016083) SNAP47 (ENSBBBG00000007139) PRSS38 (ENSBBBG00000016108) WNT9A (ENSBBBG00000016116) WNT3A (ENSBBBG00000016145) #13 ARF1 (ENSBBBG00000016170) #14 C1orf35 (ENSBBBG00000016183) #15 MRPL55 (ENSBBBG00000004037) GUK1 (ENSBBBG00000004041) #18 IBA57 (ENSBBBG00000016303) #20 ENSBBBG00000016321 ENSBBBG00000016327 #22 ENSBBBG00000016344 #22 ENSBBBG00000016350 #22 ENSBBBG00000016357 #22 ENSBBBG00000016369 #22 TRIM11 (ENSBBBG00000016378) TRIM17 (ENSBBBG00000016399) H3-4 (ENSBBBG00000004059) Artiodactyla_b ANCESTRAL SPECIES 8 ENSGT01030000234648.a.b.a.b ENSGT00940000162181 ENSGT00940000162743 ENSGT00940000162570 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a.b ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A.ld #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT00390000009510 ENSGT00940000154756.A.kd.a #22 Cetacea ANCESTRAL SPECIES 113 ENSGT00550000074800.x ENSGT00940000154756.A.ld #22 Blue whale DUPLICATION Blue whale MODERN SPECIES 14 ZFP2 (ENSBMSG00010008682) ZNF354B (ENSBMSG00010008689) JMJD4 (ENSBMSG00010008694) SNAP47 (ENSBMSG00010008703) PRSS38 (ENSBMSG00010008714) WNT9A (ENSBMSG00010008726) WNT3A (ENSBMSG00010008734) #13 ENSBMSG00010008747 #14 C1orf35 (ENSBMSG00010008763) #15 ENSBMSG00010008778 GUK1 (ENSBMSG00010008805) #18 GJC2 (ENSBMSG00010008838) #19 IBA57 (ENSBMSG00010008847) #20 ENSBMSG00010008859 ENSBMSG00010008882 #22 ENSBMSG00010000077 #22 RNF187 (ENSBMSG00010000103) H2BC26 (ENSBMSG00010000114) H2AC25 (ENSBMSG00010000131) TRIM11 (ENSBMSG00010000144) ENSBMSG00010000168 ENSBMSG00010000187 ENSBMSG00010000207 PGBD2 (ENSBMSG00010000226) ZNF692 (ENSBMSG00010000267) ENSBMSG00010000289 SH3BP5L (ENSBMSG00010000308) LYPD8 (ENSBMSG00010000338) ENSBMSG00010000371 ENSBMSG00010000389 ENSBMSG00010000428 Blue whale MODERN SPECIES 14 ZNF454 (ENSBMSG00010008671) ZFP2 (ENSBMSG00010008682) ZNF354B (ENSBMSG00010008689) JMJD4 (ENSBMSG00010008694) SNAP47 (ENSBMSG00010008703) PRSS38 (ENSBMSG00010008714) WNT9A (ENSBMSG00010008726) WNT3A (ENSBMSG00010008734) #13 ENSBMSG00010008747 #14 C1orf35 (ENSBMSG00010008763) #15 ENSBMSG00010008778 GUK1 (ENSBMSG00010008805) #18 GJC2 (ENSBMSG00010008838) #19 IBA57 (ENSBMSG00010008847) #20 ENSBMSG00010008859 ENSBMSG00010008882 #22 ENSBMSG00010000077 #22 RNF187 (ENSBMSG00010000103) H2BC26 (ENSBMSG00010000114) H2AC25 (ENSBMSG00010000131) TRIM11 (ENSBMSG00010000144) ENSBMSG00010000168 ENSBMSG00010000187 ENSBMSG00010000207 PGBD2 (ENSBMSG00010000226) ZNF692 (ENSBMSG00010000267) ENSBMSG00010000289 SH3BP5L (ENSBMSG00010000308) LYPD8 (ENSBMSG00010000338) ENSBMSG00010000371 ENSBMSG00010000389 Odontoceti ANCESTRAL SPECIES 1 ENSGT00940000162743 ENSGT00940000162570 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a.b ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b.rb.a #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00990000211596 ENSGT00550000074800.x ENSGT00940000154756.A.ld #22 ENSGT00390000009510 ENSGT01100000263474.a.b.b.e.b.a.a ENSGT00940000153092.a.a.c.b ENSGT01100000263514.A.e.a.a.u.b ENSGT00940000162155 ENSGT00940000160371 ENSGT01090000259995.a.a.b.a.a.a.a ENSGT00940000162327 ENSGT00940000161175 ENSGT01100000263552.g.b.a.a ENSGT00390000018500.a ENSGT00570000079564 ENSGT00730000111648 ENSGT00940000162246 ENSGT01090000260045.C.e.a.b Sperm whale DUPLICATION Sperm whale MODERN SPECIES 11 ZFP2 (ENSPCTG00005001642) ZNF354B (ENSPCTG00005001661) JMJD4 (ENSPCTG00005001672) SNAP47 (ENSPCTG00005001687) PRSS38 (ENSPCTG00005001709) WNT9A (ENSPCTG00005001728) WNT3A (ENSPCTG00005001738) #13 ARF1 (ENSPCTG00005001753) #14 C1orf35 (ENSPCTG00005001766) #15 ENSPCTG00005001780 GUK1 (ENSPCTG00005001793) #18 GJC2 (ENSPCTG00005001808) #19 IBA57 (ENSPCTG00005001814) #20 ENSPCTG00005001819 ENSPCTG00005001826 ENSPCTG00005001837 #22 ENSPCTG00005001845 #22 ENSPCTG00005001857 #22 RNF187 (ENSPCTG00005001868) H2BC26 (ENSPCTG00005001875) H2AC25 (ENSPCTG00005001884) ENSPCTG00005001893 TRIM11 (ENSPCTG00005001906) ENSPCTG00005001917 PGBD2 (ENSPCTG00005001930) ZNF692 (ENSPCTG00005001942) ZNF672 (ENSPCTG00005001950) SH3BP5L (ENSPCTG00005001958) LYPD8 (ENSPCTG00005001972) ENSPCTG00005001987 TRIM58 (ENSPCTG00005002006) Sperm whale MODERN SPECIES 11 ZNF354B (ENSPCTG00005001661) JMJD4 (ENSPCTG00005001672) SNAP47 (ENSPCTG00005001687) PRSS38 (ENSPCTG00005001709) WNT9A (ENSPCTG00005001728) WNT3A (ENSPCTG00005001738) #13 ARF1 (ENSPCTG00005001753) #14 C1orf35 (ENSPCTG00005001766) #15 ENSPCTG00005001780 GUK1 (ENSPCTG00005001793) #18 GJC2 (ENSPCTG00005001808) #19 IBA57 (ENSPCTG00005001814) #20 ENSPCTG00005001819 ENSPCTG00005001826 ENSPCTG00005001837 #22 ENSPCTG00005001845 #22 ENSPCTG00005001857 #22 RNF187 (ENSPCTG00005001868) H2BC26 (ENSPCTG00005001875) H2AC25 (ENSPCTG00005001884) ENSPCTG00005001893 TRIM11 (ENSPCTG00005001906) ENSPCTG00005001917 PGBD2 (ENSPCTG00005001930) ZNF692 (ENSPCTG00005001942) ZNF672 (ENSPCTG00005001950) SH3BP5L (ENSPCTG00005001958) LYPD8 (ENSPCTG00005001972) ENSPCTG00005001987 TRIM58 (ENSPCTG00005002006) ENSPCTG00005002014 Odontoceti_a ANCESTRAL SPECIES 1 ENSGT00940000162743 ENSGT00940000162570 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a.b ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b.rb.a #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00990000211596 ENSGT00550000074800.x ENSGT00940000154756.A.ld #22 ENSGT00390000009510 ENSGT01100000263474.a.b.b.e.b.a.a ENSGT00940000153092.a.a.c.b ENSGT01100000263514.A.e.a.a.u.b ENSGT00940000162155 ENSGT00940000160371 ENSGT01090000259995.a.a.b.a.a.a.a ENSGT00940000162327 ENSGT00940000161175 ENSGT01100000263552.g.b.a.a ENSGT00390000018500.a ENSGT00570000079564 ENSGT00730000111648 ENSGT00940000162246 ENSGT01090000260045.C.e.a.b Dolphin MODERN SPECIES 1162 OBSCN (ENSTTRG00000014296) #22 Odontoceti_b ANCESTRAL SPECIES 1 ENSGT00940000162743 ENSGT00940000162570 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a.b ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b.rb.a #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00990000211596 ENSGT00550000074800.x ENSGT00940000154756.A.ld #22 ENSGT00390000009510 ENSGT01100000263474.a.b.b.e.b.a.a ENSGT00940000153092.a.a.c.b ENSGT01100000263514.A.e.a.a.u.b ENSGT00940000162155 ENSGT00940000160371 ENSGT01090000259995.a.a.b.a.a.a.a ENSGT00940000162327 ENSGT00940000161175 ENSGT01100000263552.g.b.a.a ENSGT00390000018500.a ENSGT00570000079564 ENSGT00730000111648 ENSGT00940000162246 ENSGT01090000260045.C.e.a.b Monodontidae ANCESTRAL SPECIES ENSGT00940000154756.A.ld #22 Narwhal MODERN SPECIES 150 ENSMMNG00015002347 #22 Vaquita DUPLICATION Vaquita MODERN SPECIES 14 ZFP2 (ENSPSNG00000007917) ZNF354B (ENSPSNG00000007886) JMJD4 (ENSPSNG00000007858) SNAP47 (ENSPSNG00000007830) PRSS38 (ENSPSNG00000007771) WNT9A (ENSPSNG00000007743) WNT3A (ENSPSNG00000007708) #13 ENSPSNG00000007683 #14 C1orf35 (ENSPSNG00000007656) #15 MRPL55 (ENSPSNG00000007632) GUK1 (ENSPSNG00000007583) #18 GJC2 (ENSPSNG00000007534) #19 IBA57 (ENSPSNG00000007499) #20 ENSPSNG00000003866 ENSPSNG00000003825 #22 ENSPSNG00000003780 #22 RNF187 (ENSPSNG00000003755) H2BC26 (ENSPSNG00000003742) H2AC25 (ENSPSNG00000003735) ENSPSNG00000003725 TRIM17 (ENSPSNG00000003706) TRIM11 (ENSPSNG00000003681) ENSPSNG00000003658 PGBD2 (ENSPSNG00000003638) ZNF692 (ENSPSNG00000003614) ENSPSNG00000003603 SH3BP5L (ENSPSNG00000003579) ENSPSNG00000003568 LYPD8 (ENSPSNG00000003552) ENSPSNG00000003536 TRIM58 (ENSPSNG00000003501) Vaquita MODERN SPECIES 14 ZNF454 (ENSPSNG00000007949) ZFP2 (ENSPSNG00000007917) ZNF354B (ENSPSNG00000007886) JMJD4 (ENSPSNG00000007858) SNAP47 (ENSPSNG00000007830) PRSS38 (ENSPSNG00000007771) WNT9A (ENSPSNG00000007743) WNT3A (ENSPSNG00000007708) #13 ENSPSNG00000007683 #14 C1orf35 (ENSPSNG00000007656) #15 MRPL55 (ENSPSNG00000007632) GUK1 (ENSPSNG00000007583) #18 GJC2 (ENSPSNG00000007534) #19 IBA57 (ENSPSNG00000007499) #20 ENSPSNG00000003866 ENSPSNG00000003825 #22 ENSPSNG00000003780 #22 RNF187 (ENSPSNG00000003755) H2BC26 (ENSPSNG00000003742) H2AC25 (ENSPSNG00000003735) ENSPSNG00000003725 TRIM17 (ENSPSNG00000003706) TRIM11 (ENSPSNG00000003681) ENSPSNG00000003658 PGBD2 (ENSPSNG00000003638) ZNF692 (ENSPSNG00000003614) ENSPSNG00000003603 SH3BP5L (ENSPSNG00000003579) ENSPSNG00000003568 LYPD8 (ENSPSNG00000003552) ENSPSNG00000003536 Pecora ANCESTRAL SPECIES ENSGT00950000183110.a ENSGT00550000075064 ENSGT00730000111029.e.a ENSGT00940000162570 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a.b ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A.ld #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT00390000009510 ENSGT00390000008694.b.b.c.b.cb.b ENSGT00940000162181 ENSGT01030000234648.a.b.a.b ENSGT00940000162816 ENSGT00940000162715 ENSGT00940000156647 ENSGT00940000158334 ENSGT00940000153503.a.a ENSGT00940000153137.a.b.a Yarkand deer DUPLICATION Yarkand deer MODERN SPECIES 32 ZNF354B (ENSCHYG00000010723) ENSCHYG00000010707 JMJD4 (ENSCHYG00000010663) SNAP47 (ENSCHYG00000010619) PRSS38 (ENSCHYG00000010560) WNT9A (ENSCHYG00000010511) WNT3A (ENSCHYG00000010445) #13 ENSCHYG00000010399 #14 C1orf35 (ENSCHYG00000010289) #15 MRPL55 (ENSCHYG00000010212) GUK1 (ENSCHYG00000010059) #18 GJC2 (ENSCHYG00000010036) #19 IBA57 (ENSCHYG00000010014) #20 ENSCHYG00000009985 ENSCHYG00000009774 #22 ENSCHYG00000009620 #22 TRIM11 (ENSCHYG00000009542) TRIM17 (ENSCHYG00000009461) H3-4 (ENSCHYG00000009438) H2AC25 (ENSCHYG00000009419) ENSCHYG00000009390 RNF187 (ENSCHYG00000009353) ENSCHYG00000009333 ENSCHYG00000009280 ZFP2 (ENSCHYG00000009266) ZNF454 (ENSCHYG00000009231) GRM6 (ENSCHYG00000025499) ZNF879 (ENSCHYG00000025473) ZNF354C (ENSCHYG00000025442) ENSCHYG00000025422 ADAMTS2 (ENSCHYG00000025226) Yarkand deer MODERN SPECIES 32 ENSCHYG00000010766 ZNF354B (ENSCHYG00000010723) ENSCHYG00000010707 JMJD4 (ENSCHYG00000010663) SNAP47 (ENSCHYG00000010619) PRSS38 (ENSCHYG00000010560) WNT9A (ENSCHYG00000010511) WNT3A (ENSCHYG00000010445) #13 ENSCHYG00000010399 #14 C1orf35 (ENSCHYG00000010289) #15 MRPL55 (ENSCHYG00000010212) GUK1 (ENSCHYG00000010059) #18 GJC2 (ENSCHYG00000010036) #19 IBA57 (ENSCHYG00000010014) #20 ENSCHYG00000009985 ENSCHYG00000009774 #22 ENSCHYG00000009620 #22 TRIM11 (ENSCHYG00000009542) TRIM17 (ENSCHYG00000009461) H3-4 (ENSCHYG00000009438) H2AC25 (ENSCHYG00000009419) ENSCHYG00000009390 RNF187 (ENSCHYG00000009353) ENSCHYG00000009333 ENSCHYG00000009280 ZFP2 (ENSCHYG00000009266) ZNF454 (ENSCHYG00000009231) GRM6 (ENSCHYG00000025499) ZNF879 (ENSCHYG00000025473) ZNF354C (ENSCHYG00000025442) ENSCHYG00000025422 Percora_a ANCESTRAL SPECIES ENSGT00950000183110.a ENSGT00550000075064 ENSGT00730000111029.e.a ENSGT00940000162570 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a.b ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A.ld #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT00390000009510 ENSGT00390000008694.b.b.c.b.cb.b ENSGT00940000162181 ENSGT01030000234648.a.b.a.b ENSGT00940000162816 ENSGT00940000162715 ENSGT00940000156647 ENSGT00940000158334 ENSGT00940000153503.a.a ENSGT00940000153137.a.b.a Siberian musk deer MODERN SPECIES 1213 ENSMMSG00000022637 ZNF354B (ENSMMSG00000022631) JMJD4 (ENSMMSG00000022617) SNAP47 (ENSMMSG00000022600) ENSMMSG00000022591 PRSS38 (ENSMMSG00000022575) WNT9A (ENSMMSG00000022550) WNT3A (ENSMMSG00000022541) #13 ARF1 (ENSMMSG00000022533) #14 C1orf35 (ENSMMSG00000022529) #15 MRPL55 (ENSMMSG00000022520) GUK1 (ENSMMSG00000022498) #18 GJC2 (ENSMMSG00000022491) #19 IBA57 (ENSMMSG00000022482) #20 OBSCN (ENSMMSG00000020369) #22 TRIM11 (ENSMMSG00000020106) TRIM17 (ENSMMSG00000020070) H3-4 (ENSMMSG00000020062) H2AC25 (ENSMMSG00000020054) H2BC26 (ENSMMSG00000020045) RNF187 (ENSMMSG00000020017) ZNF454 (ENSMMSG00000019980) GRM6 (ENSMMSG00000019933) ZNF879 (ENSMMSG00000019906) ZNF354C (ENSMMSG00000024233) FLT4 (ENSMMSG00000024202) Bovidae ANCESTRAL SPECIES ENSGT00550000075064 ENSGT00730000111029.e.a ENSGT00940000162570 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a.b ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A.kd.b #22 ENSGT00940000154756.A.ld #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT00390000009510 ENSGT00390000008694.b.b.c.b.cb.b ENSGT00940000162743 ENSGT00940000162181 ENSGT01030000234648.a.b.a.b ENSGT00940000162816 ENSGT00940000162715 ENSGT00940000156647 ENSGT00940000158334 ENSGT00940000153503.a.a Caprinae ANCESTRAL SPECIES 32 ENSGT00950000183110.a ENSGT00550000075064 ENSGT00730000111029.e.a ENSGT00940000162570 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000154494.a.b ENSGT00940000159618 ENSGT00940000160510 #13 ENSGT00950000183080.a.b.a.b.b #14 ENSGT00390000005590 #15 ENSGT00390000010309 ENSGT00940000155815 #18 ENSGT01090000260005.a.a.a.b.a.a.a #19 ENSGT00390000006465 #20 ENSGT00940000154756.A.ld #22 ENSGT00940000160371 ENSGT00940000162155 ENSGT01100000263514.A.e.b ENSGT00940000153092.a.a.c.b ENSGT01100000263474.a.b.b.e.b.a.a ENSGT00390000009510 ENSGT00390000008694.b.b.c.b.cb.b ENSGT00940000162743 ENSGT00940000162181 ENSGT01030000234648.a.b.a.b ENSGT00940000162816 ENSGT00940000162715 ENSGT00940000156647 ENSGT00940000158334.a ENSGT00940000153503.a.a Rambouillet Sheep MODERN SPECIES 21 C1orf35 (ENSOARG00020018506) #15 MRPL55 (ENSOARG00020018459) GUK1 (ENSOARG00020018354) #18 GJC2 (ENSOARG00020018337) #19 IBA57 (ENSOARG00020018299) #20 TRIM11 (ENSOARG00020017090) TRIM17 (ENSOARG00020017007) H3-4 (ENSOARG00020016979) H2AC25 (ENSOARG00020016951) HIST3H2BB (ENSOARG00020016921) RNF187 (ENSOARG00020016886) ZFP2 (ENSOARG00020016872) ZNF454 (ENSOARG00020016811) GRM6 (ENSOARG00020016554) ZNF354C (ENSOARG00020016338) ENSOARG00020016295 #22 ADAMTS2 (ENSOARG00020015867) ENSOARG00020015796 ENSOARG00020015427 HNRNPH1 (ENSOARG00020015212) ENSOARG00020015166 CANX (ENSOARG00020014950) MAML1 (ENSOARG00020014863) LTC4S (ENSOARG00020014721) MGAT4B (ENSOARG00020014516) ENSOARG00020014482 SQSTM1 (ENSOARG00020014013) ENSOARG00020013856 ENSOARG00020013782 ENSOARG00020013747 ENSOARG00020013692 Goat MODERN SPECIES 26 GMIP (ENSCHIG00000006935) ATP13A1 (ENSCHIG00000027146) ENSCHIG00000027175 ZNF354B (ENSCHIG00000024384) JMJD4 (ENSCHIG00000001908) SNAP47 (ENSCHIG00000025042) ENSCHIG00000004906 WNT9A (ENSCHIG00000009523) WNT3A (ENSCHIG00000016159) #13 ARF1 (ENSCHIG00000010924) #14 C1orf35 (ENSCHIG00000020666) #15 MRPL55 (ENSCHIG00000024153) GUK1 (ENSCHIG00000020301) #18 GJC2 (ENSCHIG00000012045) #19 IBA57 (ENSCHIG00000025813) #20 OBSCN (ENSCHIG00000026141) #22 TRIM11 (ENSCHIG00000010660) TRIM17 (ENSCHIG00000017072) H3-4 (ENSCHIG00000008243) H2AC25 (ENSCHIG00000006649) H2BC26 (ENSCHIG00000009284) RNF187 (ENSCHIG00000012732) ENSCHIG00000025835 ZFP2 (ENSCHIG00000010314) ZNF454 (ENSCHIG00000013008) GRM6 (ENSCHIG00000024892) ZNF879 (ENSCHIG00000020873) ZNF354C (ENSCHIG00000014371) ADAMTS2 (ENSCHIG00000027055) RUFY1 (ENSCHIG00000025380) HNRNPH1 (ENSCHIG00000021285) Bovinae ANCESTRAL SPECIES ENSGT00940000154756.A.ld #22 Bos ANCESTRAL SPECIES ENSGT00940000154756.A.ld #22 Bos_b ANCESTRAL SPECIES ENSGT00940000154756.A.ld #22 Hybrid Bos Indicus MODERN SPECIES 26 ENSBIXG00005000504 JMJD4 (ENSBIXG00005005916) SNAP47 (ENSBIXG00005011285) ENSBIXG00005011259 ENSBIXG00005001061 ENSBIXG00005011249 PRSS38 (ENSBIXG00005011238) WNT9A (ENSBIXG00005006783) WNT3A (ENSBIXG00005011222) #13 ARF1 (ENSBIXG00005011212) #14 C1orf35 (ENSBIXG00005001035) #15 MRPL55 (ENSBIXG00005011160) GUK1 (ENSBIXG00005011045) #18 IBA57 (ENSBIXG00005010975) #20 ENSBIXG00005010951 OBSCN (ENSBIXG00005010529) #22 ENSBIXG00005029278 TRIM11 (ENSBIXG00005029289) TRIM17 (ENSBIXG00005029306) H3-4 (ENSBIXG00005029320) ENSBIXG00005029327 H2AC25 (ENSBIXG00005029330) H2BC26 (ENSBIXG00005029334) RNF187 (ENSBIXG00005029336) ZNF454 (ENSBIXG00005029356) GRM6 (ENSBIXG00005029370) ZNF354C (ENSBIXG00005029390) ADAMTS2 (ENSBIXG00005029444) RUFY1 (ENSBIXG00005029537) HNRNPH1 (ENSBIXG00005029588) ENSBIXG00005029650 American bison DUPLICATION American bison MODERN SPECIES 3165 GMIP (ENSBBBG00000016022) ATP13A1 (ENSBBBG00000003990) ENSBBBG00000016056 ZNF354B (ENSBBBG00000016063) JMJD4 (ENSBBBG00000016083) SNAP47 (ENSBBBG00000007139) PRSS38 (ENSBBBG00000016108) WNT9A (ENSBBBG00000016116) WNT3A (ENSBBBG00000016145) #13 ARF1 (ENSBBBG00000016170) #14 C1orf35 (ENSBBBG00000016183) #15 MRPL55 (ENSBBBG00000004037) GUK1 (ENSBBBG00000004041) #18 IBA57 (ENSBBBG00000016303) #20 ENSBBBG00000016321 ENSBBBG00000016327 #22 ENSBBBG00000016344 #22 ENSBBBG00000016350 #22 ENSBBBG00000016357 #22 ENSBBBG00000016369 #22 TRIM11 (ENSBBBG00000016378) TRIM17 (ENSBBBG00000016399) H3-4 (ENSBBBG00000004059) American bison MODERN SPECIES 3165 ATP13A1 (ENSBBBG00000003990) ENSBBBG00000016056 ZNF354B (ENSBBBG00000016063) JMJD4 (ENSBBBG00000016083) SNAP47 (ENSBBBG00000007139) PRSS38 (ENSBBBG00000016108) WNT9A (ENSBBBG00000016116) WNT3A (ENSBBBG00000016145) #13 ARF1 (ENSBBBG00000016170) #14 C1orf35 (ENSBBBG00000016183) #15 MRPL55 (ENSBBBG00000004037) GUK1 (ENSBBBG00000004041) #18 IBA57 (ENSBBBG00000016303) #20 ENSBBBG00000016321 ENSBBBG00000016327 #22 ENSBBBG00000016344 #22 ENSBBBG00000016350 #22 ENSBBBG00000016357 #22 ENSBBBG00000016369 #22 TRIM11 (ENSBBBG00000016378) TRIM17 (ENSBBBG00000016399) H3-4 (ENSBBBG00000004059)