Mammalia	ANCESTRAL SPECIES	12	ENSGT00940000160773	ENSGT00390000014069.b	ENSGT00940000158253	ENSGT00940000161141	ENSGT00940000157423	ENSGT00940000158922	ENSGT00960000190528	ENSGT00940000156382	ENSGT00470000042293.a.b	ENSGT00950000183184.b	ENSGT00940000160724	ENSGT00940000159523	ENSGT00960000189914	ENSGT00940000161812	ENSGT00390000003267	ENSGT00940000154756.A #22	ENSGT00940000154756.B ##22	ENSGT00940000166913	ENSGT00390000015009	ENSGT00530000063909.a	ENSGT00940000159790	ENSGT01090000260005.a.a.a.b.a.a.b ##20	ENSGT00940000161778	ENSGT00940000155685	ENSGT00390000004038	ENSGT00530000063991.a	ENSGT00940000159539	ENSGT00940000161200	ENSGT00940000162478	ENSGT00550000075038	ENSGT00390000017837.a
Theria	ANCESTRAL SPECIES	9	ENSGT00940000160773	ENSGT00390000014069.b	ENSGT00940000158253	ENSGT00940000161141	ENSGT00940000157423	ENSGT00940000158922	ENSGT00960000190528	ENSGT00940000156382	ENSGT00470000042293.a.b	ENSGT00950000183184.b	ENSGT00940000160724	ENSGT00940000159523	ENSGT00960000189914	ENSGT00940000161812	ENSGT00390000003267	ENSGT00940000154756.A #22	ENSGT00940000154756.B ##22	ENSGT00940000166913	ENSGT00390000015009	ENSGT00530000063909.a	ENSGT00940000159790	ENSGT01090000260005.a.a.a.b.a.a.b ##20	ENSGT00940000161778	ENSGT00940000155685	ENSGT00390000004038	ENSGT00530000063991.a	ENSGT00940000159539	ENSGT00940000161200	ENSGT00940000162478	ENSGT00550000075038	ENSGT00390000017837.a
Eutheria	ANCESTRAL SPECIES	46						ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00390000016274
Boreoeutheria	ANCESTRAL SPECIES	24	ENSGT01090000260044.A.b.a.a.a.b #33	ENSGT01100000263548.b.a.a.a.a.a	ENSGT00940000162415 #32	ENSGT00940000161967 #30	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000163997 #28
Laurasiatheria	ANCESTRAL SPECIES	30	ENSGT01090000260044.A.b.a.a.a.b #33	ENSGT01100000263548.b.a.a.a.a.a	ENSGT00940000162415 #32	ENSGT00940000161967 #30	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000163997 #28
Laurasiatheria_a	ANCESTRAL SPECIES	23	ENSGT01090000260044.A.b.a.a.a.b #33	ENSGT01100000263548.b.a.a.a.a.a	ENSGT00940000162415 #32	ENSGT00940000161967 #30	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000163997 #28
Laurasiatheria_b	ANCESTRAL SPECIES	24	ENSGT01090000260044.A.b.a.a.a.b #33	ENSGT01100000263548.b.a.a.a.a.a	ENSGT00940000162415 #32	ENSGT00940000161967 #30	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24
Laurasiatheria_c	ANCESTRAL SPECIES	29	ENSGT01100000263486.a.b.a.a.a.a.b ##35	ENSGT01090000260044.A.b.a.a.a.b #33	ENSGT00940000162415 #32	ENSGT00940000161967 #30	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT00390000009510 #27	ENSGT00940000163997 #28	ENSGT01030000234553.b.b.d.c.a #29
Chiroptera	ANCESTRAL SPECIES	75	ENSGT00940000158134.A #34	ENSGT01090000260044.A.b.a.a.a.b #33	ENSGT00940000162415 #32	ENSGT00940000161967 #30	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT00390000009510 #27	ENSGT00940000163997 #28	ENSGT01030000234553.b.b.d.c.a #29
Microchiroptera	ANCESTRAL SPECIES	63	ENSGT00940000158134.A #34	ENSGT01090000260044.A.b.a.a.a.b #33	ENSGT00940000162415 #32	ENSGT00940000161967 #30	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT00390000009510 #27	ENSGT00940000163997 #28	ENSGT01030000234553.b.b.d.c.a #29
Greater horseshoe bat	MODERN SPECIES	16	GRM6 (ENSRFEG00010020725) #7	ZNF454 (ENSRFEG00010020708) #8	ZFP2 (ENSRFEG00010020696) #9	ENSRFEG00010020667 #10	JMJD4 (ENSRFEG00010020639) #11	SNAP47 (ENSRFEG00010020620) #12	PRSS38 (ENSRFEG00010020586) #13	WNT9A (ENSRFEG00010020564) #14	WNT3A (ENSRFEG00010020529) #15	ENSRFEG00010020502 #16	ENSRFEG00010020459 #17	MRPL55 (ENSRFEG00010020427) #18	ENSRFEG00010020344 #19	GJC2 (ENSRFEG00010020305) #20	IBA57 (ENSRFEG00010020284) #21	OBSCN (ENSRFEG00010012968) #22	TRIM11 (ENSRFEG00010012738) #23	TRIM17 (ENSRFEG00010012551) #24	H3-4 (ENSRFEG00010012529) #25	H2AC25 (ENSRFEG00010012511) #26	RNF187 (ENSRFEG00010012412) #27	ENSRFEG00010012392 #28	ENSRFEG00010012356 #29	ZNF496 (ENSRFEG00010012279) #30	ENSRFEG00010012199 #31	NLRP3 (ENSRFEG00010011921) #32	OR2B11 (ENSRFEG00010011877) #33	GCSAML (ENSRFEG00010011703) #34	OR2G2 (ENSRFEG00010011520) #35	OR2G3 (ENSRFEG00010011480) #36	OR14K1 (ENSRFEG00010011310) #37
Microbat	DUPLICATION
Microbat	DUPLICATION
Microbat	MODERN SPECIES	1239		OR2B11 (ENSMLUG00000014384) #33	NLRP3 (ENSMLUG00000014375) #32	ZNF496 (ENSMLUG00000026878) #30	ENSMLUG00000024170 #11	ENSMLUG00000009770	SNAP47 (ENSMLUG00000013515) #12	PRSS38 (ENSMLUG00000012972) #13	WNT9A (ENSMLUG00000013086) #14	ENSMLUG00000026050 #15	ENSMLUG00000007020 #16	MRPL55 (ENSMLUG00000007037) #18	GUK1 (ENSMLUG00000013049) #19	GJC2 (ENSMLUG00000006940) #20	IBA57 (ENSMLUG00000008724) #21	ENSMLUG00000025341 #22	ENSMLUG00000013117 #22	ENSMLUG00000027104 #22	TRIM11 (ENSMLUG00000009420) #23	RNF187 (ENSMLUG00000002610) #27	TRIM58 (ENSMLUG00000004402)	OR2W3 (ENSMLUG00000005916) ##35	ENSMLUG00000027552	SH3BP5L (ENSMLUG00000002392)	ZNF692 (ENSMLUG00000002398)
Microbat	MODERN SPECIES	1239	OR2B11 (ENSMLUG00000014384) #33	NLRP3 (ENSMLUG00000014375) #32	ZNF496 (ENSMLUG00000026878) #30	ENSMLUG00000024170 #11	ENSMLUG00000009770	SNAP47 (ENSMLUG00000013515) #12	PRSS38 (ENSMLUG00000012972) #13	WNT9A (ENSMLUG00000013086) #14	ENSMLUG00000026050 #15	ENSMLUG00000007020 #16	MRPL55 (ENSMLUG00000007037) #18	GUK1 (ENSMLUG00000013049) #19	GJC2 (ENSMLUG00000006940) #20	IBA57 (ENSMLUG00000008724) #21	ENSMLUG00000025341 #22	ENSMLUG00000013117 #22	ENSMLUG00000027104 #22	TRIM11 (ENSMLUG00000009420) #23	RNF187 (ENSMLUG00000002610) #27	TRIM58 (ENSMLUG00000004402)	OR2W3 (ENSMLUG00000005916) ##35	ENSMLUG00000027552	SH3BP5L (ENSMLUG00000002392)	ZNF692 (ENSMLUG00000002398)
Microbat	MODERN SPECIES	1239	NLRP3 (ENSMLUG00000014375) #32	ZNF496 (ENSMLUG00000026878) #30	ENSMLUG00000024170 #11	ENSMLUG00000009770	SNAP47 (ENSMLUG00000013515) #12	PRSS38 (ENSMLUG00000012972) #13	WNT9A (ENSMLUG00000013086) #14	ENSMLUG00000026050 #15	ENSMLUG00000007020 #16	MRPL55 (ENSMLUG00000007037) #18	GUK1 (ENSMLUG00000013049) #19	GJC2 (ENSMLUG00000006940) #20	IBA57 (ENSMLUG00000008724) #21	ENSMLUG00000025341 #22	ENSMLUG00000013117 #22	ENSMLUG00000027104 #22	TRIM11 (ENSMLUG00000009420) #23	RNF187 (ENSMLUG00000002610) #27	TRIM58 (ENSMLUG00000004402)	OR2W3 (ENSMLUG00000005916) ##35	ENSMLUG00000027552	SH3BP5L (ENSMLUG00000002392)	ZNF692 (ENSMLUG00000002398)
Megabat	MODERN SPECIES	1486																OBSCN (ENSPVAG00000009411) #22
Equus	ANCESTRAL SPECIES	6					ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000163997.m #28	ENSGT01030000234553.b.b.d.d ##29	ENSGT00940000161967 #30	ENSGT00940000162415 #32	ENSGT01090000260044.A.b.a.a.a.b #33	ENSGT01100000263486.a.b.a.a.a.a.b ##35	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b.c.a ##35	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b.c.b ##35	ENSGT00940000158134.A #34	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.b #35	ENSGT01060000248581.C.a.b.a.a
Horse	MODERN SPECIES	5						JMJD4 (ENSECAG00000021407) #11	SNAP47 (ENSECAG00000020954) #12	PRSS38 (ENSECAG00000020942) #13	WNT9A (ENSECAG00000020178) #14	WNT3A (ENSECAG00000028812) #15	ARF1 (ENSECAG00000032327) #16	GUK1 (ENSECAG00000019280) #19	ENSECAG00000059239 #17	GJC2 (ENSECAG00000037673) #20	IBA57 (ENSECAG00000006335) #21	OBSCN (ENSECAG00000016720) #22	TRIM11 (ENSECAG00000016373) #23	TRIM17 (ENSECAG00000039891) #24	ENSECAG00000059949	H2BC26 (ENSECAG00000048080)	RNF187 (ENSECAG00000016200) #27	ENSECAG00000040368 #28	ENSECAG00000032464 #28	ENSECAG00000033206 ##29	ZNF496 (ENSECAG00000015844) #30	NLRP3 (ENSECAG00000015382) #32	OR2B11 (ENSECAG00000002900) #33	OR2W29 (ENSECAG00000001770) ##35	OR2C3F (ENSECAG00000031551) ##35	OR2C3 (ENSECAG00000036826) ##35	OR2C3D (ENSECAG00000028047) ##35
Donkey	MODERN SPECIES	29				JMJD4 (ENSEASG00005017516) #11	SNAP47 (ENSEASG00005017519) #12	ENSEASG00005023983	PRSS38 (ENSEASG00005017526) #13	WNT9A (ENSEASG00005017530) #14	WNT3A (ENSEASG00005010564) #15	ENSEASG00005036953	C1orf35 (ENSEASG00005017537) #17	MRPL55 (ENSEASG00005024877) #18	GUK1 (ENSEASG00005017539) #19	GJC2 (ENSEASG00005017541) #20	ENSEASG00005033564 #21	OBSCN (ENSEASG00005017625) #22	TRIM11 (ENSEASG00005017954) #23	TRIM17 (ENSEASG00005017955) #24	ENSEASG00005035131	H2BC26 (ENSEASG00005026831)	ENSEASG00005029469	ENSEASG00005017961 #27	ENSEASG00005024868 #28	ENSEASG00005035367 #28	ENSEASG00005017951 ##29	ENSEASG00005017964 #30	NLRP3 (ENSEASG00005017967) #32	OR2B11 (ENSEASG00005017975) #33	ENSEASG00005017978 ##35	ENSEASG00005038196 ##35	ENSEASG00005028368 #28
Carnivora	ANCESTRAL SPECIES	28					ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000163997 #28	ENSGT01030000234553.b.b.d.c.a #29	ENSGT01090000259995.a.a.b.a.b.a	ENSGT00940000161967 #30	ENSGT00940000162415 #32	ENSGT01100000263548.b.a.a.a.a.a	ENSGT01090000260044.A.b.a.a.a.b #33
Felidae	ANCESTRAL SPECIES	6	ENSGT01090000260018.A.a.b.a	ENSGT00940000160338	ENSGT00940000162750	ENSGT00530000063632.B	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000158017.d	ENSGT01090000259995.a.a.b.a.b.a	ENSGT00940000161967 #30	ENSGT00940000162415 #32	ENSGT01100000263548.b.a.a.a.a.a	ENSGT01090000260044.A.b.a.a.a.b #33	ENSGT01090000260044.A.b.a.a.a.a.a ##33	ENSGT01100000263486.a.b.a.a.a.a.b ##35	ENSGT01100000263548.a.b.b
Panthera	ANCESTRAL SPECIES	6	ENSGT01090000260018.A.a.b.a	ENSGT00940000160338	ENSGT00940000162750	ENSGT00530000063632.B	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT00390000009510 #27	ENSGT00940000161967 #30	ENSGT00940000162415 #32	ENSGT01100000263548.b.a.a.a.a.a	ENSGT01090000260044.A.b.a.a.a.b #33	ENSGT01090000260044.A.b.a.a.a.a.a ##33	ENSGT01100000263486.a.b.a.a.a.a.b ##35	ENSGT01100000263548.a.b.b	ENSGT01100000263486.a.b.b ##35	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b ##35	ENSGT00940000158134.A #34
Panthera_a	ANCESTRAL SPECIES	3	ENSGT01090000260018.A.a.b.a	ENSGT00940000160338	ENSGT00940000162750	ENSGT00530000063632.B	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT00390000009510 #27	ENSGT00940000161967 #30	ENSGT00940000162415 #32	ENSGT01100000263548.b.a.a.a.a.a	ENSGT01090000260044.A.b.a.a.a.b #33	ENSGT01090000260044.A.b.a.a.a.a.a ##33	ENSGT01100000263486.a.b.a.a.a.a.b ##35	ENSGT01100000263548.a.b.b	ENSGT01100000263486.a.b.b ##35	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b ##35	ENSGT00940000158134.A #34
lion	DUPLICATION
lion	MODERN SPECIES		ENSPLOG00000002906	ZFP62 (ENSPLOG00000002927)	MGAT1 (ENSPLOG00000002940)	JMJD4 (ENSPLOG00000002956) #11	SNAP47 (ENSPLOG00000002987) #12	ENSPLOG00000003011	PRSS38 (ENSPLOG00000003023) #13	WNT9A (ENSPLOG00000000004) #14	WNT3A (ENSPLOG00000000013) #15	ARF1 (ENSPLOG00000000016) #16	C1orf35 (ENSPLOG00000000019) #17	MRPL55 (ENSPLOG00000000024) #18	GUK1 (ENSPLOG00000000033) #19	GJC2 (ENSPLOG00000000039) #20	IBA57 (ENSPLOG00000000043) #21	ENSPLOG00000000051 #22	ENSPLOG00000000078 #22	TRIM11 (ENSPLOG00000000094) #23	TRIM17 (ENSPLOG00000000102) #24	H2AC25 (ENSPLOG00000000118) #26	H2BC26 (ENSPLOG00000000122)	RNF187 (ENSPLOG00000000130) #27	ENSPLOG00000000153 #28	ENSPLOG00000000167 #28	ENSPLOG00000000176	ZNF496 (ENSPLOG00000000182) #30	NLRP3 (ENSPLOG00000000198) #32	ENSPLOG00000000215 ##33	OR2B11 (ENSPLOG00000000220) #33	ENSPLOG00000000228 ##35	OR2C3 (ENSPLOG00000000232) ##35
lion	MODERN SPECIES		ZFP62 (ENSPLOG00000002927)	MGAT1 (ENSPLOG00000002940)	JMJD4 (ENSPLOG00000002956) #11	SNAP47 (ENSPLOG00000002987) #12	ENSPLOG00000003011	PRSS38 (ENSPLOG00000003023) #13	WNT9A (ENSPLOG00000000004) #14	WNT3A (ENSPLOG00000000013) #15	ARF1 (ENSPLOG00000000016) #16	C1orf35 (ENSPLOG00000000019) #17	MRPL55 (ENSPLOG00000000024) #18	GUK1 (ENSPLOG00000000033) #19	GJC2 (ENSPLOG00000000039) #20	IBA57 (ENSPLOG00000000043) #21	ENSPLOG00000000051 #22	ENSPLOG00000000078 #22	TRIM11 (ENSPLOG00000000094) #23	TRIM17 (ENSPLOG00000000102) #24	H2AC25 (ENSPLOG00000000118) #26	H2BC26 (ENSPLOG00000000122)	RNF187 (ENSPLOG00000000130) #27	ENSPLOG00000000153 #28	ENSPLOG00000000167 #28	ENSPLOG00000000176	ZNF496 (ENSPLOG00000000182) #30	NLRP3 (ENSPLOG00000000198) #32	ENSPLOG00000000215 ##33	OR2B11 (ENSPLOG00000000220) #33	ENSPLOG00000000228 ##35	OR2C3 (ENSPLOG00000000232) ##35	GCSAML (ENSPLOG00000000252) #34
Caniformia	ANCESTRAL SPECIES	34					ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000163997 #28	ENSGT01030000234553.b.b.d.c.a #29
Canidae	ANCESTRAL SPECIES	64	ENSGT01090000259995.b.b.a.a.b.i.a.a.a.b	ENSGT01090000259995.b.b.a.a.b.j.b	ENSGT00940000162666	ENSGT01090000260086.E.b	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815.c #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000163997 #28
Canis_lupus	DUPLICATION
Canis_lupus	ANCESTRAL SPECIES	51	ENSGT00390000000053.t	ENSGT01090000259995.b.b.a.a.b.j.b	ENSGT00940000162666	ENSGT01090000260086.E.b	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b.jb #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815.c #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A.ed #22	ENSGT00940000154756.A.fd #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT00940000160426	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000163997.g #28	ENSGT00940000163997.h #28
Dog	MODERN SPECIES	5	OR2L3B (ENSCAFG00845008326)	ENSCAFG00845008294	ENSCAFG00845008271	ENSCAFG00845008246	JMJD4 (ENSCAFG00845008215) #11	SNAP47 (ENSCAFG00845008129) #12	PRSS38 (ENSCAFG00845008050) #13	WNT9A (ENSCAFG00845008006) #14	WNT3A (ENSCAFG00845007960) #15	ARF1 (ENSCAFG00845007924) #16	C1orf35 (ENSCAFG00845007876) #17	MRPL55 (ENSCAFG00845007834) #18	GUK1 (ENSCAFG00845007785) #19	GJC2 (ENSCAFG00845007738) #20	IBA57 (ENSCAFG00845007710) #21	ENSCAFG00845007646 #22	ENSCAFG00845007619 #22	ENSCAFG00845007586 #22	ENSCAFG00845007457 #22	TRIM17 (ENSCAFG00845007329) #23	HIST3H2A (ENSCAFG00845007204) #26	H2BC26 (ENSCAFG00845007167)	ENSCAFG00845007128	ENSCAFG00845007077 #27	ENSCAFG00845006991 #28	ENSCAFG00845006907 #28	ENSCAFG00845006866 #12	ENSCAFG00845006842	ENSCAFG00845006817
Dingo	MODERN SPECIES	372	ENSCAFG00020005648	ENSCAFG00020005654	OR13G1 (ENSCAFG00020005659)	OR6F1 (ENSCAFG00020005660)	ENSCAFG00020005667	JMJD4 (ENSCAFG00020005670) #11	SNAP47 (ENSCAFG00020005687) #12	PRSS38 (ENSCAFG00020005690) #13	WNT9A (ENSCAFG00020005694) #14	WNT3A (ENSCAFG00020005706) #15	ARF1 (ENSCAFG00020005724) #16	ENSCAFG00020005738 #17	MRPL55 (ENSCAFG00020005742) #18	ENSCAFG00020005747 #19	IBA57 (ENSCAFG00020005762) #21	ENSCAFG00020005770 #22	ENSCAFG00020005782 #22	ENSCAFG00020005800 #22	ENSCAFG00020005812 #22	ENSCAFG00020005814 #22	ENSCAFG00020005817 #22	ENSCAFG00020005824 #22	TRIM11 (ENSCAFG00020005850) #23	TRIM17 (ENSCAFG00020005854) #24	ENSCAFG00020005861	H2BC26 (ENSCAFG00020005888)	ENSCAFG00020005896	RNF187 (ENSCAFG00020005898) #27	ENSCAFG00020005906 #28	ENSCAFG00020005924 #28	ENSCAFG00020005930
Canis_lupus	ANCESTRAL SPECIES	51	ENSGT01090000259995.b.b.a.a.b.j.b	ENSGT00940000162666	ENSGT01090000260086.E.b	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b.jb #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815.c #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A.ed #22	ENSGT00940000154756.A.fd #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT00940000160426	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000163997.g #28	ENSGT00940000163997.h #28
Dingo	DUPLICATION
Dingo	DUPLICATION
Dingo	DUPLICATION
Dingo	DUPLICATION
Dingo	DUPLICATION
Dingo	MODERN SPECIES	372	SNAP47 (ENSCAFG00020005687) #12	PRSS38 (ENSCAFG00020005690) #13	WNT9A (ENSCAFG00020005694) #14	WNT3A (ENSCAFG00020005706) #15	ARF1 (ENSCAFG00020005724) #16	ENSCAFG00020005738 #17	MRPL55 (ENSCAFG00020005742) #18	ENSCAFG00020005747 #19	IBA57 (ENSCAFG00020005762) #21	ENSCAFG00020005770 #22	ENSCAFG00020005782 #22	ENSCAFG00020005800 #22	ENSCAFG00020005812 #22	ENSCAFG00020005814 #22	ENSCAFG00020005817 #22	ENSCAFG00020005824 #22	TRIM11 (ENSCAFG00020005850) #23	TRIM17 (ENSCAFG00020005854) #24	ENSCAFG00020005861	H2BC26 (ENSCAFG00020005888)	ENSCAFG00020005896	RNF187 (ENSCAFG00020005898) #27	ENSCAFG00020005906 #28	ENSCAFG00020005924 #28	ENSCAFG00020005930
Dingo	MODERN SPECIES	372	ENSCAFG00020005667	JMJD4 (ENSCAFG00020005670) #11	SNAP47 (ENSCAFG00020005687) #12	PRSS38 (ENSCAFG00020005690) #13	WNT9A (ENSCAFG00020005694) #14	WNT3A (ENSCAFG00020005706) #15	ARF1 (ENSCAFG00020005724) #16	ENSCAFG00020005738 #17	MRPL55 (ENSCAFG00020005742) #18	ENSCAFG00020005747 #19	IBA57 (ENSCAFG00020005762) #21	ENSCAFG00020005770 #22	ENSCAFG00020005782 #22	ENSCAFG00020005800 #22	ENSCAFG00020005812 #22	ENSCAFG00020005814 #22	ENSCAFG00020005817 #22	ENSCAFG00020005824 #22	TRIM11 (ENSCAFG00020005850) #23	TRIM17 (ENSCAFG00020005854) #24	ENSCAFG00020005861	H2BC26 (ENSCAFG00020005888)	ENSCAFG00020005896	RNF187 (ENSCAFG00020005898) #27	ENSCAFG00020005906 #28	ENSCAFG00020005924 #28	ENSCAFG00020005930
Dingo	MODERN SPECIES	372	JMJD4 (ENSCAFG00020005670) #11	SNAP47 (ENSCAFG00020005687) #12	PRSS38 (ENSCAFG00020005690) #13	WNT9A (ENSCAFG00020005694) #14	WNT3A (ENSCAFG00020005706) #15	ARF1 (ENSCAFG00020005724) #16	ENSCAFG00020005738 #17	MRPL55 (ENSCAFG00020005742) #18	ENSCAFG00020005747 #19	IBA57 (ENSCAFG00020005762) #21	ENSCAFG00020005770 #22	ENSCAFG00020005782 #22	ENSCAFG00020005800 #22	ENSCAFG00020005812 #22	ENSCAFG00020005814 #22	ENSCAFG00020005817 #22	ENSCAFG00020005824 #22	TRIM11 (ENSCAFG00020005850) #23	TRIM17 (ENSCAFG00020005854) #24	ENSCAFG00020005861	H2BC26 (ENSCAFG00020005888)	ENSCAFG00020005896	RNF187 (ENSCAFG00020005898) #27	ENSCAFG00020005906 #28	ENSCAFG00020005924 #28	ENSCAFG00020005930
Dingo	MODERN SPECIES	372	ENSCAFG00020005654	OR13G1 (ENSCAFG00020005659)	OR6F1 (ENSCAFG00020005660)	ENSCAFG00020005667	JMJD4 (ENSCAFG00020005670) #11	SNAP47 (ENSCAFG00020005687) #12	PRSS38 (ENSCAFG00020005690) #13	WNT9A (ENSCAFG00020005694) #14	WNT3A (ENSCAFG00020005706) #15	ARF1 (ENSCAFG00020005724) #16	ENSCAFG00020005738 #17	MRPL55 (ENSCAFG00020005742) #18	ENSCAFG00020005747 #19	IBA57 (ENSCAFG00020005762) #21	ENSCAFG00020005770 #22	ENSCAFG00020005782 #22	ENSCAFG00020005800 #22	ENSCAFG00020005812 #22	ENSCAFG00020005814 #22	ENSCAFG00020005817 #22	ENSCAFG00020005824 #22	TRIM11 (ENSCAFG00020005850) #23	TRIM17 (ENSCAFG00020005854) #24	ENSCAFG00020005861	H2BC26 (ENSCAFG00020005888)	ENSCAFG00020005896	RNF187 (ENSCAFG00020005898) #27	ENSCAFG00020005906 #28	ENSCAFG00020005924 #28	ENSCAFG00020005930
Dingo	MODERN SPECIES	372	OR13G1 (ENSCAFG00020005659)	OR6F1 (ENSCAFG00020005660)	ENSCAFG00020005667	JMJD4 (ENSCAFG00020005670) #11	SNAP47 (ENSCAFG00020005687) #12	PRSS38 (ENSCAFG00020005690) #13	WNT9A (ENSCAFG00020005694) #14	WNT3A (ENSCAFG00020005706) #15	ARF1 (ENSCAFG00020005724) #16	ENSCAFG00020005738 #17	MRPL55 (ENSCAFG00020005742) #18	ENSCAFG00020005747 #19	IBA57 (ENSCAFG00020005762) #21	ENSCAFG00020005770 #22	ENSCAFG00020005782 #22	ENSCAFG00020005800 #22	ENSCAFG00020005812 #22	ENSCAFG00020005814 #22	ENSCAFG00020005817 #22	ENSCAFG00020005824 #22	TRIM11 (ENSCAFG00020005850) #23	TRIM17 (ENSCAFG00020005854) #24	ENSCAFG00020005861	H2BC26 (ENSCAFG00020005888)	ENSCAFG00020005896	RNF187 (ENSCAFG00020005898) #27	ENSCAFG00020005906 #28	ENSCAFG00020005924 #28	ENSCAFG00020005930
Dingo	MODERN SPECIES	372	OR6F1 (ENSCAFG00020005660)	ENSCAFG00020005667	JMJD4 (ENSCAFG00020005670) #11	SNAP47 (ENSCAFG00020005687) #12	PRSS38 (ENSCAFG00020005690) #13	WNT9A (ENSCAFG00020005694) #14	WNT3A (ENSCAFG00020005706) #15	ARF1 (ENSCAFG00020005724) #16	ENSCAFG00020005738 #17	MRPL55 (ENSCAFG00020005742) #18	ENSCAFG00020005747 #19	IBA57 (ENSCAFG00020005762) #21	ENSCAFG00020005770 #22	ENSCAFG00020005782 #22	ENSCAFG00020005800 #22	ENSCAFG00020005812 #22	ENSCAFG00020005814 #22	ENSCAFG00020005817 #22	ENSCAFG00020005824 #22	TRIM11 (ENSCAFG00020005850) #23	TRIM17 (ENSCAFG00020005854) #24	ENSCAFG00020005861	H2BC26 (ENSCAFG00020005888)	ENSCAFG00020005896	RNF187 (ENSCAFG00020005898) #27	ENSCAFG00020005906 #28	ENSCAFG00020005924 #28	ENSCAFG00020005930
Dog	DUPLICATION
Dog	DUPLICATION
Dog	MODERN SPECIES	5	ENSCAFG00845008246	JMJD4 (ENSCAFG00845008215) #11	SNAP47 (ENSCAFG00845008129) #12	PRSS38 (ENSCAFG00845008050) #13	WNT9A (ENSCAFG00845008006) #14	WNT3A (ENSCAFG00845007960) #15	ARF1 (ENSCAFG00845007924) #16	C1orf35 (ENSCAFG00845007876) #17	MRPL55 (ENSCAFG00845007834) #18	GUK1 (ENSCAFG00845007785) #19	GJC2 (ENSCAFG00845007738) #20	IBA57 (ENSCAFG00845007710) #21	ENSCAFG00845007646 #22	ENSCAFG00845007619 #22	ENSCAFG00845007586 #22	ENSCAFG00845007457 #22	TRIM17 (ENSCAFG00845007329) #23	HIST3H2A (ENSCAFG00845007204) #26	H2BC26 (ENSCAFG00845007167)	ENSCAFG00845007128	ENSCAFG00845007077 #27	ENSCAFG00845006991 #28	ENSCAFG00845006907 #28	ENSCAFG00845006866 #12	ENSCAFG00845006842	ENSCAFG00845006817
Dog	MODERN SPECIES	5	ENSCAFG00845008271	ENSCAFG00845008246	JMJD4 (ENSCAFG00845008215) #11	SNAP47 (ENSCAFG00845008129) #12	PRSS38 (ENSCAFG00845008050) #13	WNT9A (ENSCAFG00845008006) #14	WNT3A (ENSCAFG00845007960) #15	ARF1 (ENSCAFG00845007924) #16	C1orf35 (ENSCAFG00845007876) #17	MRPL55 (ENSCAFG00845007834) #18	GUK1 (ENSCAFG00845007785) #19	GJC2 (ENSCAFG00845007738) #20	IBA57 (ENSCAFG00845007710) #21	ENSCAFG00845007646 #22	ENSCAFG00845007619 #22	ENSCAFG00845007586 #22	ENSCAFG00845007457 #22	TRIM17 (ENSCAFG00845007329) #23	HIST3H2A (ENSCAFG00845007204) #26	H2BC26 (ENSCAFG00845007167)	ENSCAFG00845007128	ENSCAFG00845007077 #27	ENSCAFG00845006991 #28	ENSCAFG00845006907 #28	ENSCAFG00845006866 #12	ENSCAFG00845006842	ENSCAFG00845006817
Dog	MODERN SPECIES	5	ENSCAFG00845008294	ENSCAFG00845008271	ENSCAFG00845008246	JMJD4 (ENSCAFG00845008215) #11	SNAP47 (ENSCAFG00845008129) #12	PRSS38 (ENSCAFG00845008050) #13	WNT9A (ENSCAFG00845008006) #14	WNT3A (ENSCAFG00845007960) #15	ARF1 (ENSCAFG00845007924) #16	C1orf35 (ENSCAFG00845007876) #17	MRPL55 (ENSCAFG00845007834) #18	GUK1 (ENSCAFG00845007785) #19	GJC2 (ENSCAFG00845007738) #20	IBA57 (ENSCAFG00845007710) #21	ENSCAFG00845007646 #22	ENSCAFG00845007619 #22	ENSCAFG00845007586 #22	ENSCAFG00845007457 #22	TRIM17 (ENSCAFG00845007329) #23	HIST3H2A (ENSCAFG00845007204) #26	H2BC26 (ENSCAFG00845007167)	ENSCAFG00845007128	ENSCAFG00845007077 #27	ENSCAFG00845006991 #28	ENSCAFG00845006907 #28	ENSCAFG00845006866 #12	ENSCAFG00845006842	ENSCAFG00845006817
Caniformia_b	DUPLICATION
Caniformia_b	DUPLICATION
Caniformia_b	ANCESTRAL SPECIES																	ENSGT00940000154756.A.gd.a #22
Mustelinae	ANCESTRAL SPECIES																	ENSGT00940000154756.A.gd.a #22
Ferret	MODERN SPECIES	525					JMJD4 (ENSMPUG00000000927) #11	SNAP47 (ENSMPUG00000000929) #12	PRSS38 (ENSMPUG00000000932) #13	WNT9A (ENSMPUG00000000947) #14	WNT3A (ENSMPUG00000000960) #15	ARF1 (ENSMPUG00000000962) #16	C1orf35 (ENSMPUG00000000996) #17	MRPL55 (ENSMPUG00000001004) #18	GUK1 (ENSMPUG00000001011) #19	IBA57 (ENSMPUG00000001035) #21	ENSMPUG00000001039 #22	ENSMPUG00000001077 #22	ENSMPUG00000001079	TRIM11 (ENSMPUG00000001081) #23	H3-4 (ENSMPUG00000018529) #25	H2AC25 (ENSMPUG00000018534) #26	H2BC26 (ENSMPUG00000018539)	ENSMPUG00000001083	ENSMPUG00000001085 #27	ENSMPUG00000001088 #28	ENSMPUG00000018546 #29	ENSMPUG00000001090	ENSMPUG00000001091
Caniformia_b	ANCESTRAL SPECIES	41					ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A.gd.b #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000163997 #28	ENSGT01030000234553.b.b.d.c.a.d #29
Mustelinae	ANCESTRAL SPECIES	159					ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A.gd.b #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000163997 #28	ENSGT01030000234553.b.b.d.c.a.d #29
American mink	DUPLICATION
American mink	MODERN SPECIES	522					JMJD4 (ENSNVIG00000023741) #11	SNAP47 (ENSNVIG00000023746) #12	PRSS38 (ENSNVIG00000023749) #13	WNT9A (ENSNVIG00000023751) #14	WNT3A (ENSNVIG00000023755) #15	ARF1 (ENSNVIG00000000852) #16	C1orf35 (ENSNVIG00000000876) #17	MRPL55 (ENSNVIG00000000896) #18	GUK1 (ENSNVIG00000000938) #19	GJC2 (ENSNVIG00000001001) #20	IBA57 (ENSNVIG00000001008) #21	ENSNVIG00000001052 #22	ENSNVIG00000001101 #22	TRIM11 (ENSNVIG00000001136) #23	TRIM17 (ENSNVIG00000001165) #24	H3-4 (ENSNVIG00000001199) #25	H2AC25 (ENSNVIG00000001203) #26	H2BC26 (ENSNVIG00000001207)	ENSNVIG00000001218
American mink	MODERN SPECIES	522				JMJD4 (ENSNVIG00000023741) #11	SNAP47 (ENSNVIG00000023746) #12	PRSS38 (ENSNVIG00000023749) #13	WNT9A (ENSNVIG00000023751) #14	WNT3A (ENSNVIG00000023755) #15	ARF1 (ENSNVIG00000000852) #16	C1orf35 (ENSNVIG00000000876) #17	MRPL55 (ENSNVIG00000000896) #18	GUK1 (ENSNVIG00000000938) #19	GJC2 (ENSNVIG00000001001) #20	IBA57 (ENSNVIG00000001008) #21	ENSNVIG00000001052 #22	ENSNVIG00000001101 #22	TRIM11 (ENSNVIG00000001136) #23	TRIM17 (ENSNVIG00000001165) #24	H3-4 (ENSNVIG00000001199) #25	H2AC25 (ENSNVIG00000001203) #26	H2BC26 (ENSNVIG00000001207)	ENSNVIG00000001218
Ferret	MODERN SPECIES	525						JMJD4 (ENSMPUG00000000927) #11	SNAP47 (ENSMPUG00000000929) #12	PRSS38 (ENSMPUG00000000932) #13	WNT9A (ENSMPUG00000000947) #14	WNT3A (ENSMPUG00000000960) #15	ARF1 (ENSMPUG00000000962) #16	C1orf35 (ENSMPUG00000000996) #17	MRPL55 (ENSMPUG00000001004) #18	GUK1 (ENSMPUG00000001011) #19	IBA57 (ENSMPUG00000001035) #21	ENSMPUG00000001039 #22	ENSMPUG00000001077 #22	ENSMPUG00000001079	TRIM11 (ENSMPUG00000001081) #23	H3-4 (ENSMPUG00000018529) #25	H2AC25 (ENSMPUG00000018534) #26	H2BC26 (ENSMPUG00000018539)	ENSMPUG00000001083	ENSMPUG00000001085 #27	ENSMPUG00000001088 #28	ENSMPUG00000018546 #29	ENSMPUG00000001090	ENSMPUG00000001091
Ursidae	ANCESTRAL SPECIES	59					ENSGT01030000234553.b.b.d.c.a.d #29	ENSGT00940000163997 #28	ENSGT00390000009510 #27	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263514.A.e.b #25	ENSGT00940000162155 #24	ENSGT00940000160371 #23	ENSGT00940000154756.A.hd #22	ENSGT00390000006465 #21	ENSGT00940000154756.A.gd.b #22	ENSGT00940000155815 #19	ENSGT00390000010309.a #18	ENSGT00390000005590 #17	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00940000160510 #15	ENSGT00940000159618 #14	ENSGT00940000154494.a #13	ENSGT00950000182843.b #12	ENSGT00940000159380 #11
Ursus	ANCESTRAL SPECIES																	ENSGT00940000154756.A.gd.b #22
Polar bear	DUPLICATION
Polar bear	MODERN SPECIES	314						JMJD4 (ENSUMAG00000001003) #11	ENSUMAG00000000990	SNAP47 (ENSUMAG00000000986) #12	PRSS38 (ENSUMAG00000000967) #13	WNT9A (ENSUMAG00000000953) #14	WNT3A (ENSUMAG00000000923) #15	ARF1 (ENSUMAG00000000918) #16	MRPL55 (ENSUMAG00000000905) #18	GUK1 (ENSUMAG00000000901) #19	ENSUMAG00000000883 #22	ENSUMAG00000000847 #22	TRIM17 (ENSUMAG00000000819) #24	ENSUMAG00000000803 ##25	ENSUMAG00000000792	H2BC26 (ENSUMAG00000000733)	ENSUMAG00000000715	ENSUMAG00000000704 #27	ENSUMAG00000000672 #28	ENSUMAG00000000653 #28	ENSUMAG00000000615 #29
Polar bear	MODERN SPECIES	314							JMJD4 (ENSUMAG00000001003) #11	ENSUMAG00000000990	SNAP47 (ENSUMAG00000000986) #12	PRSS38 (ENSUMAG00000000967) #13	WNT9A (ENSUMAG00000000953) #14	WNT3A (ENSUMAG00000000923) #15	ARF1 (ENSUMAG00000000918) #16	MRPL55 (ENSUMAG00000000905) #18	GUK1 (ENSUMAG00000000901) #19	ENSUMAG00000000883 #22	ENSUMAG00000000847 #22	TRIM17 (ENSUMAG00000000819) #24	ENSUMAG00000000803 ##25	ENSUMAG00000000792	H2BC26 (ENSUMAG00000000733)	ENSUMAG00000000715	ENSUMAG00000000704 #27	ENSUMAG00000000672 #28	ENSUMAG00000000653 #28	ENSUMAG00000000615 #29
Giant Panda	MODERN SPECIES	13							ENSAMEG00000014310 #27	ENSAMEG00000024010	ENSAMEG00000028006	H2BC26 (ENSAMEG00000026668)	H2AW (ENSAMEG00000025465) #26	H3-4 (ENSAMEG00000031491) #25	TRIM17 (ENSAMEG00000014312) #24	ENSAMEG00000023964 #23	ENSAMEG00000023921 #21	ENSAMEG00000016258 #22	ENSAMEG00000016280 #19	ENSAMEG00000016292 #18	C1orf35 (ENSAMEG00000016295) #17	ARF1 (ENSAMEG00000030995) #16	WNT3A (ENSAMEG00000004256) #15	WNT9A (ENSAMEG00000027387) #14	PRSS38 (ENSAMEG00000007189) #13	SNAP47 (ENSAMEG00000009252) #12	JMJD4 (ENSAMEG00000018153) #11	ENSAMEG00000029442	ENSAMEG00000030449	ENSAMEG00000029726	OR14C36 (ENSAMEG00000013199)	ENSAMEG00000028922	ENSAMEG00000019418
Caniformia_b	ANCESTRAL SPECIES																	ENSGT00940000154756.A.hd #22
Ursidae	ANCESTRAL SPECIES	59					ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309.a #18	ENSGT00940000155815 #19	ENSGT00940000154756.A.gd.b #22	ENSGT00390000006465 #21	ENSGT00940000154756.A.hd #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000163997 #28	ENSGT01030000234553.b.b.d.c.a.d #29
Ursus	ANCESTRAL SPECIES	192					ENSGT00940000159380 #11	ENSGT00940000169575	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309.a #18	ENSGT00940000155815 #19	ENSGT00390000006465 #21	ENSGT00940000154756.A.hd #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.f ##25	ENSGT01020000230360.c.b.a.b.b.d	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000163997 #28	ENSGT01030000234553.b.b.d.c.a.d #29
American black bear	MODERN SPECIES	2400																ENSUAMG00000013620 #22	TRIM11 (ENSUAMG00000013614) #23	TRIM17 (ENSUAMG00000013611) #24	ENSUAMG00000013599	H2AC25 (ENSUAMG00000013568) #26	H2BC26 (ENSUAMG00000013549)	ENSUAMG00000013542	ENSUAMG00000013539 #27
Artiodactyla	ANCESTRAL SPECIES	31					ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a.b #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT00390000009510 #27	ENSGT00940000163997 #28
Suina	ANCESTRAL SPECIES	56	ENSGT01090000260018.A.a.a.a.b.a	ENSGT01090000260018.A.a.a.a.b.b	ENSGT01090000260018.A.a.a.b.b.s.a.a	ENSGT01090000260018.A.a.a.b.a	ENSGT01090000260018.A.a.a.b.b.s.a.b	ENSGT01090000259995.a.a.a	ENSGT00390000010671	ENSGT00730000111648	ENSGT00570000079564	ENSGT00390000018500.a	ENSGT01100000263521.a.a.b.a.b.b	ENSGT00940000161175	ENSGT00940000163610	ENSGT00940000162327	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT00390000009510 #27	ENSGT00940000163997 #28	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00940000155815 #19	ENSGT00390000010309 #18	ENSGT00390000005590 #17	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00940000160510 #15	ENSGT00940000159618 #14	ENSGT00940000154494.a.b #13	ENSGT00950000182843.b #12
Chacoan peccary	MODERN SPECIES	953	SHANK3 (ENSCWAG00000020472)	ENSCWAG00000020508	ENSCWAG00000020519	OR4A16 (ENSCWAG00000020533)	JMJD4 (ENSCWAG00000020541) #11	SNAP47 (ENSCWAG00000020551) #12	PRSS38 (ENSCWAG00000020558) #13	WNT9A (ENSCWAG00000020570) #14	WNT3A (ENSCWAG00000020576) #15	ARF1 (ENSCWAG00000020582) #16	C1orf35 (ENSCWAG00000020590) #17	MRPL55 (ENSCWAG00000020597) #18	GUK1 (ENSCWAG00000020604) #19	GJC2 (ENSCWAG00000020627) #20	IBA57 (ENSCWAG00000020636) #21	OBSCN (ENSCWAG00000020667) #22	TRIM11 (ENSCWAG00000020837) #23	TRIM17 (ENSCWAG00000020852) #24	H2AC25 (ENSCWAG00000020876) #26	H2BC26 (ENSCWAG00000020885)	RNF187 (ENSCWAG00000020893) #27	ENSCWAG00000020902 #28	ENSCWAG00000020908	PGBD2 (ENSCWAG00000008376)	ENSCWAG00000008433	ZNF692 (ENSCWAG00000008595)	ENSCWAG00000008779	SH3BP5L (ENSCWAG00000008801)	LYPD8 (ENSCWAG00000008831)	ENSCWAG00000008871	ENSCWAG00000008915
Pig	MODERN SPECIES	10	ENSSSCG00000032924	ENSSSCG00000040165	ENSSSCG00000014467	ENSSSCG00000036276	JMJD4 (ENSSSCG00000013983) #11	SNAP47 (ENSSSCG00000013984) #12	ENSSSCG00000057198	ENSSSCG00000048546	WNT9A (ENSSSCG00000024671) #14	WNT3A (ENSSSCG00000029870) #15	ARF1 (ENSSSCG00000013992) #16	C1orf35 (ENSSSCG00000013991) #17	MRPL55 (ENSSSCG00000029050) #18	ENSSSCG00000013990 #19	GJC2 (ENSSSCG00000013989) #20	OBSCN (ENSSSCG00000034569) #22	RNF187 (ENSSSCG00000032994) #27	H2BC26 (ENSSSCG00000061158)	H2AC25 (ENSSSCG00000047900) #26	TRIM17 (ENSSSCG00000014000) #24	TRIM11 (ENSSSCG00000035985) #23	ENSSSCG00000059454 #29	ENSSSCG00000026598	ENSSSCG00000013980	ENSSSCG00000039611	PGBD2 (ENSSSCG00000033305)	ENSSSCG00000013976	ZNF692 (ENSSSCG00000030672)	ZNF672 (ENSSSCG00000013978)	SH3BP5L (ENSSSCG00000025900)	LYPD8 (ENSSSCG00000013973)
Artiodactyla_a	ANCESTRAL SPECIES	7	ENSGT01030000234648.a.b.a.b #7	ENSGT00940000162181 #8	ENSGT00940000162743 #9	ENSGT00940000162570	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a.b #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT00390000009510 #27
Camelidae	ANCESTRAL SPECIES	109						ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a.b #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00940000163657.j	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT00390000009510 #27
Arabian camel	MODERN SPECIES	22	ENSCDRG00005007599	LYPD8 (ENSCDRG00005007575)	SH3BP5L (ENSCDRG00005007520)	ENSCDRG00005007493	ENSCDRG00005007466	JMJD4 (ENSCDRG00005007427) #11	SNAP47 (ENSCDRG00005007395) #12	PRSS38 (ENSCDRG00005007311) #13	WNT9A (ENSCDRG00005007206) #14	WNT3A (ENSCDRG00005007136) #15	ENSCDRG00005007080	MRPL55 (ENSCDRG00005007045) #18	GUK1 (ENSCDRG00005006904) #19	GJC2 (ENSCDRG00005006871) #20	IBA57 (ENSCDRG00005006837) #21	ENSCDRG00005006705 #22	TRIM11 (ENSCDRG00005006600) #23	TRIM17 (ENSCDRG00005006573) #24	H3-4 (ENSCDRG00005006553) #25	H2AC25 (ENSCDRG00005006540) #26	H2BC26 (ENSCDRG00005006528)	ENSCDRG00005006516 #27	ENSCDRG00005006493	ENSCDRG00005006375
Artiodactyla_b	DUPLICATION
Artiodactyla_b	DUPLICATION
Artiodactyla_b	ANCESTRAL SPECIES	8																ENSGT00940000154756.A.kd.a #22	ENSGT00390000009510 #27	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263514.A.e.b #25	ENSGT00940000162155 #24	ENSGT00940000160371 #23	ENSGT00940000154756.A.ld #22	ENSGT00390000006465 #21	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00940000155815 #19	ENSGT00390000010309 #18	ENSGT00390000005590 #17	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00940000160510 #15	ENSGT00940000159618 #14
Pecora	ANCESTRAL SPECIES																	ENSGT00940000154756.A.kd.a #22
Percora_a	ANCESTRAL SPECIES																	ENSGT00940000154756.A.kd.a #22
Bovidae	ANCESTRAL SPECIES																	ENSGT00940000154756.A.kd.a #22
Bovinae	ANCESTRAL SPECIES																	ENSGT00940000154756.A.kd.a #22
Bos	ANCESTRAL SPECIES																	ENSGT00940000154756.A.kd.a #22
Bos_a	ANCESTRAL SPECIES																	ENSGT00940000154756.A.kd.a #22
Wild yak	MODERN SPECIES	610		ZNF354B (ENSBMUG00000013110)	JMJD4 (ENSBMUG00000013129) #11	SNAP47 (ENSBMUG00000013160) #12	PRSS38 (ENSBMUG00000013170) #13	WNT9A (ENSBMUG00000013188) #14	WNT3A (ENSBMUG00000013208) #15	ARF1 (ENSBMUG00000013231) #16	C1orf35 (ENSBMUG00000013244) #17	MRPL55 (ENSBMUG00000013341) #18	GUK1 (ENSBMUG00000013370) #19	GJC2 (ENSBMUG00000013389) #20	IBA57 (ENSBMUG00000013400) #21	ENSBMUG00000013430 #22	ENSBMUG00000013541 #22	ENSBMUG00000013557 #22
Cetacea	ANCESTRAL SPECIES	1	ENSGT01030000234648.a.b.a.b #7	ENSGT00940000162181 #8	ENSGT00940000162743 #9	ENSGT00940000162570	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a.b #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b.rb.a #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A.kd.a #22	ENSGT00390000009510 #27	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT00940000162155 #24	ENSGT00940000160371 #23	ENSGT01090000259995.a.a.b.a.a.a.a	ENSGT00940000162327	ENSGT00940000161175	ENSGT01100000263552.g.b.a.a	ENSGT00390000018500.a	ENSGT00570000079564	ENSGT00730000111648	ENSGT01090000259995.a.a.a	ENSGT00940000162246	ENSGT01090000260045.C.e.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.b #35
Odontoceti	ANCESTRAL SPECIES																	ENSGT00940000154756.A.kd.a #22
Sperm whale	MODERN SPECIES	11	JMJD4 (ENSPCTG00005001672) #11	SNAP47 (ENSPCTG00005001687) #12	PRSS38 (ENSPCTG00005001709) #13	WNT9A (ENSPCTG00005001728) #14	WNT3A (ENSPCTG00005001738) #15	ARF1 (ENSPCTG00005001753) #16	C1orf35 (ENSPCTG00005001766) #17	ENSPCTG00005001780 #18	GUK1 (ENSPCTG00005001793) #19	GJC2 (ENSPCTG00005001808) #20	IBA57 (ENSPCTG00005001814) #21	ENSPCTG00005001819	ENSPCTG00005001826	ENSPCTG00005001837 #22	ENSPCTG00005001845 #22	ENSPCTG00005001857 #22	RNF187 (ENSPCTG00005001868) #27	H2BC26 (ENSPCTG00005001875)	H2AC25 (ENSPCTG00005001884) #26	ENSPCTG00005001893 ##25	TRIM11 (ENSPCTG00005001906) #23	ENSPCTG00005001917	PGBD2 (ENSPCTG00005001930)	ZNF692 (ENSPCTG00005001942)	ZNF672 (ENSPCTG00005001950)	SH3BP5L (ENSPCTG00005001958)	LYPD8 (ENSPCTG00005001972)	ENSPCTG00005001987	TRIM58 (ENSPCTG00005002006)	ENSPCTG00005002014	OR2G2 (ENSPCTG00005002019) #35
Artiodactyla_b	ANCESTRAL SPECIES																	ENSGT00940000154756.A.kd.b #22
Pecora	ANCESTRAL SPECIES																	ENSGT00940000154756.A.kd.b #22
Percora_a	ANCESTRAL SPECIES																	ENSGT00940000154756.A.kd.b #22
Bovidae	ANCESTRAL SPECIES		ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00730000111029.e.a	ENSGT00940000162570	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a.b #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A.kd.b #22	ENSGT00940000154756.A.ld #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT00390000009510 #27	ENSGT00390000008694.b.b.c.b.cb.b	ENSGT00940000162743 #9	ENSGT00940000162181 #8	ENSGT01030000234648.a.b.a.b #7	ENSGT00940000162816	ENSGT00940000162715	ENSGT00940000156647	ENSGT00940000158334
Bovinae	DUPLICATION
Bovinae	DUPLICATION
Bovinae	ANCESTRAL SPECIES	34	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00730000111029.e.a	ENSGT00940000162570	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a.b #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A.kd.b.a.a #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT00390000009510 #27	ENSGT00390000008694.b.b.c.b.cb.b	ENSGT00940000162743 #9	ENSGT00940000162181 #8	ENSGT01030000234648.a.b.a.b #7	ENSGT00940000162816	ENSGT00940000162715	ENSGT00940000156647	ENSGT00940000158334	ENSGT00940000153503.a.a
Bos	DUPLICATION
Bos	ANCESTRAL SPECIES																	ENSGT00940000154756.A.kd.b.a.a.a #22
Bos_b	ANCESTRAL SPECIES																	ENSGT00940000154756.A.kd.b.a.a.a #22
Cow	DUPLICATION
Cow	MODERN SPECIES	26	ENSBTAG00000052161	ZNF354B (ENSBTAG00000017123)	JMJD4 (ENSBTAG00000004191) #11	SNAP47 (ENSBTAG00000004188) #12	PRSS38 (ENSBTAG00000013977) #13	WNT9A (ENSBTAG00000020267) #14	WNT3A (ENSBTAG00000039397) #15	ARF1 (ENSBTAG00000007725) #16	C7H1orf35 (ENSBTAG00000020720) #17	MRPL55 (ENSBTAG00000020721) #18	GUK1 (ENSBTAG00000014775) #19	GJC2 (ENSBTAG00000014916) #20	IBA57 (ENSBTAG00000014918) #21	ENSBTAG00000049190 #22	ENSBTAG00000051744 #22	ENSBTAG00000040028 #22	ENSBTAG00000007820	TRIM11 (ENSBTAG00000039246) #23	TRIM17 (ENSBTAG00000018673) #24	H3-4 (ENSBTAG00000055153) #25	H2AC25 (ENSBTAG00000037964) #26	H2BC26 (ENSBTAG00000053467)	RNF187 (ENSBTAG00000019667) #27	ENSBTAG00000052690	ZFP2 (ENSBTAG00000007122) #9	ZNF454 (ENSBTAG00000004262) #8	GRM6 (ENSBTAG00000016187) #7	ENSBTAG00000034973	ZNF879 (ENSBTAG00000038541)	ENSBTAG00000055301	ZNF354C (ENSBTAG00000002281)
Cow	MODERN SPECIES	26	ATP13A1 (ENSBTAG00000007128)	ENSBTAG00000052161	ZNF354B (ENSBTAG00000017123)	JMJD4 (ENSBTAG00000004191) #11	SNAP47 (ENSBTAG00000004188) #12	PRSS38 (ENSBTAG00000013977) #13	WNT9A (ENSBTAG00000020267) #14	WNT3A (ENSBTAG00000039397) #15	ARF1 (ENSBTAG00000007725) #16	C7H1orf35 (ENSBTAG00000020720) #17	MRPL55 (ENSBTAG00000020721) #18	GUK1 (ENSBTAG00000014775) #19	GJC2 (ENSBTAG00000014916) #20	IBA57 (ENSBTAG00000014918) #21	ENSBTAG00000049190 #22	ENSBTAG00000051744 #22	ENSBTAG00000040028 #22	ENSBTAG00000007820	TRIM11 (ENSBTAG00000039246) #23	TRIM17 (ENSBTAG00000018673) #24	H3-4 (ENSBTAG00000055153) #25	H2AC25 (ENSBTAG00000037964) #26	H2BC26 (ENSBTAG00000053467)	RNF187 (ENSBTAG00000019667) #27	ENSBTAG00000052690	ZFP2 (ENSBTAG00000007122) #9	ZNF454 (ENSBTAG00000004262) #8	GRM6 (ENSBTAG00000016187) #7	ENSBTAG00000034973	ZNF879 (ENSBTAG00000038541)	ENSBTAG00000055301
Bos_a	ANCESTRAL SPECIES	29	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00940000162570	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a.b #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A.kd.b.a.a.a #22	ENSGT00390000009312.n.b	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT00390000009510 #27	ENSGT00390000008694.b.b.c.b.cb.b	ENSGT00940000162743 #9	ENSGT00940000162181 #8	ENSGT01030000234648.a.b.a.b #7	ENSGT00940000162816	ENSGT00940000162715	ENSGT00940000156647	ENSGT00940000158334
Wild yak	MODERN SPECIES	610				ZNF354B (ENSBMUG00000013110)	JMJD4 (ENSBMUG00000013129) #11	SNAP47 (ENSBMUG00000013160) #12	PRSS38 (ENSBMUG00000013170) #13	WNT9A (ENSBMUG00000013188) #14	WNT3A (ENSBMUG00000013208) #15	ARF1 (ENSBMUG00000013231) #16	C1orf35 (ENSBMUG00000013244) #17	MRPL55 (ENSBMUG00000013341) #18	GUK1 (ENSBMUG00000013370) #19	GJC2 (ENSBMUG00000013389) #20	IBA57 (ENSBMUG00000013400) #21	ENSBMUG00000013430 #22	ENSBMUG00000013541 #22	ENSBMUG00000013557 #22
Bos	ANCESTRAL SPECIES	34	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00730000111029.e.a	ENSGT00940000162570	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a.b #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A.kd.b.a.a.b #22	ENSGT00390000009312.n.b	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT00390000009510 #27	ENSGT00390000008694.b.b.c.b.cb.b	ENSGT00940000162743 #9	ENSGT00940000162181 #8	ENSGT01030000234648.a.b.a.b #7	ENSGT00940000162816	ENSGT00940000162715	ENSGT00940000156647	ENSGT00940000158334
Bos_b	ANCESTRAL SPECIES	36	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00730000111029.e.a	ENSGT00940000162570	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a.b #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A.kd.b.a.a.b #22	ENSGT00390000009312.n.b	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT00390000009510 #27	ENSGT00940000162743 #9	ENSGT00940000162181 #8	ENSGT01030000234648.a.b.a.b #7	ENSGT00940000162715	ENSGT00940000156647	ENSGT00940000158334	ENSGT00940000153503.a.a	ENSGT00940000153137.a.b.a
Cow	MODERN SPECIES	26	GMIP (ENSBTAG00000015144)	ATP13A1 (ENSBTAG00000007128)	ENSBTAG00000052161	ZNF354B (ENSBTAG00000017123)	JMJD4 (ENSBTAG00000004191) #11	SNAP47 (ENSBTAG00000004188) #12	PRSS38 (ENSBTAG00000013977) #13	WNT9A (ENSBTAG00000020267) #14	WNT3A (ENSBTAG00000039397) #15	ARF1 (ENSBTAG00000007725) #16	C7H1orf35 (ENSBTAG00000020720) #17	MRPL55 (ENSBTAG00000020721) #18	GUK1 (ENSBTAG00000014775) #19	GJC2 (ENSBTAG00000014916) #20	IBA57 (ENSBTAG00000014918) #21	ENSBTAG00000049190 #22	ENSBTAG00000051744 #22	ENSBTAG00000040028 #22	ENSBTAG00000007820	TRIM11 (ENSBTAG00000039246) #23	TRIM17 (ENSBTAG00000018673) #24	H3-4 (ENSBTAG00000055153) #25	H2AC25 (ENSBTAG00000037964) #26	H2BC26 (ENSBTAG00000053467)	RNF187 (ENSBTAG00000019667) #27	ENSBTAG00000052690	ZFP2 (ENSBTAG00000007122) #9	ZNF454 (ENSBTAG00000004262) #8	GRM6 (ENSBTAG00000016187) #7	ENSBTAG00000034973	ZNF879 (ENSBTAG00000038541)
American bison	DUPLICATION
American bison	MODERN SPECIES	3165	JMJD4 (ENSBBBG00000016083) #11	SNAP47 (ENSBBBG00000007139) #12	PRSS38 (ENSBBBG00000016108) #13	WNT9A (ENSBBBG00000016116) #14	WNT3A (ENSBBBG00000016145) #15	ARF1 (ENSBBBG00000016170) #16	C1orf35 (ENSBBBG00000016183) #17	MRPL55 (ENSBBBG00000004037) #18	GUK1 (ENSBBBG00000004041) #19	IBA57 (ENSBBBG00000016303) #21	ENSBBBG00000016321	ENSBBBG00000016327 #22	ENSBBBG00000016344 #22	ENSBBBG00000016350 #22	ENSBBBG00000016357 #22	ENSBBBG00000016369 #22	TRIM11 (ENSBBBG00000016378) #23	TRIM17 (ENSBBBG00000016399) #24	H3-4 (ENSBBBG00000004059) #25
American bison	MODERN SPECIES	3165	ZNF354B (ENSBBBG00000016063)	JMJD4 (ENSBBBG00000016083) #11	SNAP47 (ENSBBBG00000007139) #12	PRSS38 (ENSBBBG00000016108) #13	WNT9A (ENSBBBG00000016116) #14	WNT3A (ENSBBBG00000016145) #15	ARF1 (ENSBBBG00000016170) #16	C1orf35 (ENSBBBG00000016183) #17	MRPL55 (ENSBBBG00000004037) #18	GUK1 (ENSBBBG00000004041) #19	IBA57 (ENSBBBG00000016303) #21	ENSBBBG00000016321	ENSBBBG00000016327 #22	ENSBBBG00000016344 #22	ENSBBBG00000016350 #22	ENSBBBG00000016357 #22	ENSBBBG00000016369 #22	TRIM11 (ENSBBBG00000016378) #23	TRIM17 (ENSBBBG00000016399) #24	H3-4 (ENSBBBG00000004059) #25
Bovinae	ANCESTRAL SPECIES																	ENSGT00940000154756.A.kd.b.a.b #22
Bos	ANCESTRAL SPECIES																	ENSGT00940000154756.A.kd.b.a.b #22
Bos_a	ANCESTRAL SPECIES																	ENSGT00940000154756.A.kd.b.a.b #22
Wild yak	MODERN SPECIES	610			ZNF354B (ENSBMUG00000013110)	JMJD4 (ENSBMUG00000013129) #11	SNAP47 (ENSBMUG00000013160) #12	PRSS38 (ENSBMUG00000013170) #13	WNT9A (ENSBMUG00000013188) #14	WNT3A (ENSBMUG00000013208) #15	ARF1 (ENSBMUG00000013231) #16	C1orf35 (ENSBMUG00000013244) #17	MRPL55 (ENSBMUG00000013341) #18	GUK1 (ENSBMUG00000013370) #19	GJC2 (ENSBMUG00000013389) #20	IBA57 (ENSBMUG00000013400) #21	ENSBMUG00000013430 #22	ENSBMUG00000013541 #22	ENSBMUG00000013557 #22
Bovinae	ANCESTRAL SPECIES																	ENSGT00940000154756.A.kd.b.b #22
American bison	MODERN SPECIES	3165	ENSBBBG00000016056	ZNF354B (ENSBBBG00000016063)	JMJD4 (ENSBBBG00000016083) #11	SNAP47 (ENSBBBG00000007139) #12	PRSS38 (ENSBBBG00000016108) #13	WNT9A (ENSBBBG00000016116) #14	WNT3A (ENSBBBG00000016145) #15	ARF1 (ENSBBBG00000016170) #16	C1orf35 (ENSBBBG00000016183) #17	MRPL55 (ENSBBBG00000004037) #18	GUK1 (ENSBBBG00000004041) #19	IBA57 (ENSBBBG00000016303) #21	ENSBBBG00000016321	ENSBBBG00000016327 #22	ENSBBBG00000016344 #22	ENSBBBG00000016350 #22	ENSBBBG00000016357 #22	ENSBBBG00000016369 #22	TRIM11 (ENSBBBG00000016378) #23	TRIM17 (ENSBBBG00000016399) #24	H3-4 (ENSBBBG00000004059) #25
Artiodactyla_b	ANCESTRAL SPECIES	8	ENSGT01030000234648.a.b.a.b #7	ENSGT00940000162181 #8	ENSGT00940000162743 #9	ENSGT00940000162570	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a.b #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A.ld #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT00390000009510 #27	ENSGT00940000154756.A.kd.a #22
Cetacea	ANCESTRAL SPECIES	113															ENSGT00550000074800.x	ENSGT00940000154756.A.ld #22
Blue whale	DUPLICATION
Blue whale	MODERN SPECIES	14	ZFP2 (ENSBMSG00010008682) #9	ZNF354B (ENSBMSG00010008689)	JMJD4 (ENSBMSG00010008694) #11	SNAP47 (ENSBMSG00010008703) #12	PRSS38 (ENSBMSG00010008714) #13	WNT9A (ENSBMSG00010008726) #14	WNT3A (ENSBMSG00010008734) #15	ENSBMSG00010008747 #16	C1orf35 (ENSBMSG00010008763) #17	ENSBMSG00010008778 #18	GUK1 (ENSBMSG00010008805) #19	GJC2 (ENSBMSG00010008838) #20	IBA57 (ENSBMSG00010008847) #21	ENSBMSG00010008859	ENSBMSG00010008882 #22	ENSBMSG00010000077 #22	RNF187 (ENSBMSG00010000103) #27	H2BC26 (ENSBMSG00010000114)	H2AC25 (ENSBMSG00010000131) #26	TRIM11 (ENSBMSG00010000144) #23	ENSBMSG00010000168 #28	ENSBMSG00010000187	ENSBMSG00010000207	PGBD2 (ENSBMSG00010000226)	ZNF692 (ENSBMSG00010000267)	ENSBMSG00010000289	SH3BP5L (ENSBMSG00010000308)	LYPD8 (ENSBMSG00010000338)	ENSBMSG00010000371	ENSBMSG00010000389	ENSBMSG00010000428
Blue whale	MODERN SPECIES	14	ZNF454 (ENSBMSG00010008671) #8	ZFP2 (ENSBMSG00010008682) #9	ZNF354B (ENSBMSG00010008689)	JMJD4 (ENSBMSG00010008694) #11	SNAP47 (ENSBMSG00010008703) #12	PRSS38 (ENSBMSG00010008714) #13	WNT9A (ENSBMSG00010008726) #14	WNT3A (ENSBMSG00010008734) #15	ENSBMSG00010008747 #16	C1orf35 (ENSBMSG00010008763) #17	ENSBMSG00010008778 #18	GUK1 (ENSBMSG00010008805) #19	GJC2 (ENSBMSG00010008838) #20	IBA57 (ENSBMSG00010008847) #21	ENSBMSG00010008859	ENSBMSG00010008882 #22	ENSBMSG00010000077 #22	RNF187 (ENSBMSG00010000103) #27	H2BC26 (ENSBMSG00010000114)	H2AC25 (ENSBMSG00010000131) #26	TRIM11 (ENSBMSG00010000144) #23	ENSBMSG00010000168 #28	ENSBMSG00010000187	ENSBMSG00010000207	PGBD2 (ENSBMSG00010000226)	ZNF692 (ENSBMSG00010000267)	ENSBMSG00010000289	SH3BP5L (ENSBMSG00010000308)	LYPD8 (ENSBMSG00010000338)	ENSBMSG00010000371	ENSBMSG00010000389
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00940000162743 #9	ENSGT00940000162570	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a.b #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b.rb.a #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00990000211596	ENSGT00550000074800.x	ENSGT00940000154756.A.ld #22	ENSGT00390000009510 #27	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263514.A.e.a.a.u.b ##25	ENSGT00940000162155 #24	ENSGT00940000160371 #23	ENSGT01090000259995.a.a.b.a.a.a.a	ENSGT00940000162327	ENSGT00940000161175	ENSGT01100000263552.g.b.a.a	ENSGT00390000018500.a	ENSGT00570000079564	ENSGT00730000111648	ENSGT00940000162246	ENSGT01090000260045.C.e.a.b
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES	11	ZFP2 (ENSPCTG00005001642) #9	ZNF354B (ENSPCTG00005001661)	JMJD4 (ENSPCTG00005001672) #11	SNAP47 (ENSPCTG00005001687) #12	PRSS38 (ENSPCTG00005001709) #13	WNT9A (ENSPCTG00005001728) #14	WNT3A (ENSPCTG00005001738) #15	ARF1 (ENSPCTG00005001753) #16	C1orf35 (ENSPCTG00005001766) #17	ENSPCTG00005001780 #18	GUK1 (ENSPCTG00005001793) #19	GJC2 (ENSPCTG00005001808) #20	IBA57 (ENSPCTG00005001814) #21	ENSPCTG00005001819	ENSPCTG00005001826	ENSPCTG00005001837 #22	ENSPCTG00005001845 #22	ENSPCTG00005001857 #22	RNF187 (ENSPCTG00005001868) #27	H2BC26 (ENSPCTG00005001875)	H2AC25 (ENSPCTG00005001884) #26	ENSPCTG00005001893 ##25	TRIM11 (ENSPCTG00005001906) #23	ENSPCTG00005001917	PGBD2 (ENSPCTG00005001930)	ZNF692 (ENSPCTG00005001942)	ZNF672 (ENSPCTG00005001950)	SH3BP5L (ENSPCTG00005001958)	LYPD8 (ENSPCTG00005001972)	ENSPCTG00005001987	TRIM58 (ENSPCTG00005002006)
Sperm whale	MODERN SPECIES	11	ZNF354B (ENSPCTG00005001661)	JMJD4 (ENSPCTG00005001672) #11	SNAP47 (ENSPCTG00005001687) #12	PRSS38 (ENSPCTG00005001709) #13	WNT9A (ENSPCTG00005001728) #14	WNT3A (ENSPCTG00005001738) #15	ARF1 (ENSPCTG00005001753) #16	C1orf35 (ENSPCTG00005001766) #17	ENSPCTG00005001780 #18	GUK1 (ENSPCTG00005001793) #19	GJC2 (ENSPCTG00005001808) #20	IBA57 (ENSPCTG00005001814) #21	ENSPCTG00005001819	ENSPCTG00005001826	ENSPCTG00005001837 #22	ENSPCTG00005001845 #22	ENSPCTG00005001857 #22	RNF187 (ENSPCTG00005001868) #27	H2BC26 (ENSPCTG00005001875)	H2AC25 (ENSPCTG00005001884) #26	ENSPCTG00005001893 ##25	TRIM11 (ENSPCTG00005001906) #23	ENSPCTG00005001917	PGBD2 (ENSPCTG00005001930)	ZNF692 (ENSPCTG00005001942)	ZNF672 (ENSPCTG00005001950)	SH3BP5L (ENSPCTG00005001958)	LYPD8 (ENSPCTG00005001972)	ENSPCTG00005001987	TRIM58 (ENSPCTG00005002006)	ENSPCTG00005002014
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00940000162743 #9	ENSGT00940000162570	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a.b #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b.rb.a #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00990000211596	ENSGT00550000074800.x	ENSGT00940000154756.A.ld #22	ENSGT00390000009510 #27	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263514.A.e.a.a.u.b ##25	ENSGT00940000162155 #24	ENSGT00940000160371 #23	ENSGT01090000259995.a.a.b.a.a.a.a	ENSGT00940000162327	ENSGT00940000161175	ENSGT01100000263552.g.b.a.a	ENSGT00390000018500.a	ENSGT00570000079564	ENSGT00730000111648	ENSGT00940000162246	ENSGT01090000260045.C.e.a.b
Dolphin	MODERN SPECIES	1162																OBSCN (ENSTTRG00000014296) #22
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00940000162743 #9	ENSGT00940000162570	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a.b #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b.rb.a #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00990000211596	ENSGT00550000074800.x	ENSGT00940000154756.A.ld #22	ENSGT00390000009510 #27	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263514.A.e.a.a.u.b ##25	ENSGT00940000162155 #24	ENSGT00940000160371 #23	ENSGT01090000259995.a.a.b.a.a.a.a	ENSGT00940000162327	ENSGT00940000161175	ENSGT01100000263552.g.b.a.a	ENSGT00390000018500.a	ENSGT00570000079564	ENSGT00730000111648	ENSGT00940000162246	ENSGT01090000260045.C.e.a.b
Monodontidae	ANCESTRAL SPECIES																	ENSGT00940000154756.A.ld #22
Narwhal	MODERN SPECIES	150																ENSMMNG00015002347 #22
Vaquita	DUPLICATION
Vaquita	MODERN SPECIES	14	ZFP2 (ENSPSNG00000007917) #9	ZNF354B (ENSPSNG00000007886)	JMJD4 (ENSPSNG00000007858) #11	SNAP47 (ENSPSNG00000007830) #12	PRSS38 (ENSPSNG00000007771) #13	WNT9A (ENSPSNG00000007743) #14	WNT3A (ENSPSNG00000007708) #15	ENSPSNG00000007683 #16	C1orf35 (ENSPSNG00000007656) #17	MRPL55 (ENSPSNG00000007632) #18	GUK1 (ENSPSNG00000007583) #19	GJC2 (ENSPSNG00000007534) #20	IBA57 (ENSPSNG00000007499) #21	ENSPSNG00000003866	ENSPSNG00000003825 #22	ENSPSNG00000003780 #22	RNF187 (ENSPSNG00000003755) #27	H2BC26 (ENSPSNG00000003742)	H2AC25 (ENSPSNG00000003735) #26	ENSPSNG00000003725 ##25	TRIM17 (ENSPSNG00000003706) #24	TRIM11 (ENSPSNG00000003681) #23	ENSPSNG00000003658	PGBD2 (ENSPSNG00000003638)	ZNF692 (ENSPSNG00000003614)	ENSPSNG00000003603	SH3BP5L (ENSPSNG00000003579)	ENSPSNG00000003568	LYPD8 (ENSPSNG00000003552)	ENSPSNG00000003536	TRIM58 (ENSPSNG00000003501)
Vaquita	MODERN SPECIES	14	ZNF454 (ENSPSNG00000007949) #8	ZFP2 (ENSPSNG00000007917) #9	ZNF354B (ENSPSNG00000007886)	JMJD4 (ENSPSNG00000007858) #11	SNAP47 (ENSPSNG00000007830) #12	PRSS38 (ENSPSNG00000007771) #13	WNT9A (ENSPSNG00000007743) #14	WNT3A (ENSPSNG00000007708) #15	ENSPSNG00000007683 #16	C1orf35 (ENSPSNG00000007656) #17	MRPL55 (ENSPSNG00000007632) #18	GUK1 (ENSPSNG00000007583) #19	GJC2 (ENSPSNG00000007534) #20	IBA57 (ENSPSNG00000007499) #21	ENSPSNG00000003866	ENSPSNG00000003825 #22	ENSPSNG00000003780 #22	RNF187 (ENSPSNG00000003755) #27	H2BC26 (ENSPSNG00000003742)	H2AC25 (ENSPSNG00000003735) #26	ENSPSNG00000003725 ##25	TRIM17 (ENSPSNG00000003706) #24	TRIM11 (ENSPSNG00000003681) #23	ENSPSNG00000003658	PGBD2 (ENSPSNG00000003638)	ZNF692 (ENSPSNG00000003614)	ENSPSNG00000003603	SH3BP5L (ENSPSNG00000003579)	ENSPSNG00000003568	LYPD8 (ENSPSNG00000003552)	ENSPSNG00000003536
Pecora	ANCESTRAL SPECIES		ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00730000111029.e.a	ENSGT00940000162570	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a.b #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A.ld #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT00390000009510 #27	ENSGT00390000008694.b.b.c.b.cb.b	ENSGT00940000162181 #8	ENSGT01030000234648.a.b.a.b #7	ENSGT00940000162816	ENSGT00940000162715	ENSGT00940000156647	ENSGT00940000158334	ENSGT00940000153503.a.a	ENSGT00940000153137.a.b.a
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	32	ZNF354B (ENSCHYG00000010723)	ENSCHYG00000010707	JMJD4 (ENSCHYG00000010663) #11	SNAP47 (ENSCHYG00000010619) #12	PRSS38 (ENSCHYG00000010560) #13	WNT9A (ENSCHYG00000010511) #14	WNT3A (ENSCHYG00000010445) #15	ENSCHYG00000010399 #16	C1orf35 (ENSCHYG00000010289) #17	MRPL55 (ENSCHYG00000010212) #18	GUK1 (ENSCHYG00000010059) #19	GJC2 (ENSCHYG00000010036) #20	IBA57 (ENSCHYG00000010014) #21	ENSCHYG00000009985	ENSCHYG00000009774 #22	ENSCHYG00000009620 #22	TRIM11 (ENSCHYG00000009542) #23	TRIM17 (ENSCHYG00000009461) #24	H3-4 (ENSCHYG00000009438) #25	H2AC25 (ENSCHYG00000009419) #26	ENSCHYG00000009390	RNF187 (ENSCHYG00000009353) #27	ENSCHYG00000009333	ENSCHYG00000009280	ZFP2 (ENSCHYG00000009266) #9	ZNF454 (ENSCHYG00000009231) #8	GRM6 (ENSCHYG00000025499) #7	ZNF879 (ENSCHYG00000025473)	ZNF354C (ENSCHYG00000025442)	ENSCHYG00000025422	ADAMTS2 (ENSCHYG00000025226)
Yarkand deer	MODERN SPECIES	32	ENSCHYG00000010766	ZNF354B (ENSCHYG00000010723)	ENSCHYG00000010707	JMJD4 (ENSCHYG00000010663) #11	SNAP47 (ENSCHYG00000010619) #12	PRSS38 (ENSCHYG00000010560) #13	WNT9A (ENSCHYG00000010511) #14	WNT3A (ENSCHYG00000010445) #15	ENSCHYG00000010399 #16	C1orf35 (ENSCHYG00000010289) #17	MRPL55 (ENSCHYG00000010212) #18	GUK1 (ENSCHYG00000010059) #19	GJC2 (ENSCHYG00000010036) #20	IBA57 (ENSCHYG00000010014) #21	ENSCHYG00000009985	ENSCHYG00000009774 #22	ENSCHYG00000009620 #22	TRIM11 (ENSCHYG00000009542) #23	TRIM17 (ENSCHYG00000009461) #24	H3-4 (ENSCHYG00000009438) #25	H2AC25 (ENSCHYG00000009419) #26	ENSCHYG00000009390	RNF187 (ENSCHYG00000009353) #27	ENSCHYG00000009333	ENSCHYG00000009280	ZFP2 (ENSCHYG00000009266) #9	ZNF454 (ENSCHYG00000009231) #8	GRM6 (ENSCHYG00000025499) #7	ZNF879 (ENSCHYG00000025473)	ZNF354C (ENSCHYG00000025442)	ENSCHYG00000025422
Percora_a	ANCESTRAL SPECIES		ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00730000111029.e.a	ENSGT00940000162570	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a.b #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A.ld #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT00390000009510 #27	ENSGT00390000008694.b.b.c.b.cb.b	ENSGT00940000162181 #8	ENSGT01030000234648.a.b.a.b #7	ENSGT00940000162816	ENSGT00940000162715	ENSGT00940000156647	ENSGT00940000158334	ENSGT00940000153503.a.a	ENSGT00940000153137.a.b.a
Siberian musk deer	MODERN SPECIES	1213		ENSMMSG00000022637	ZNF354B (ENSMMSG00000022631)	JMJD4 (ENSMMSG00000022617) #11	SNAP47 (ENSMMSG00000022600) #12	ENSMMSG00000022591	PRSS38 (ENSMMSG00000022575) #13	WNT9A (ENSMMSG00000022550) #14	WNT3A (ENSMMSG00000022541) #15	ARF1 (ENSMMSG00000022533) #16	C1orf35 (ENSMMSG00000022529) #17	MRPL55 (ENSMMSG00000022520) #18	GUK1 (ENSMMSG00000022498) #19	GJC2 (ENSMMSG00000022491) #20	IBA57 (ENSMMSG00000022482) #21	OBSCN (ENSMMSG00000020369) #22	TRIM11 (ENSMMSG00000020106) #23	TRIM17 (ENSMMSG00000020070) #24	H3-4 (ENSMMSG00000020062) #25	H2AC25 (ENSMMSG00000020054) #26	H2BC26 (ENSMMSG00000020045)	RNF187 (ENSMMSG00000020017) #27	ZNF454 (ENSMMSG00000019980) #8	GRM6 (ENSMMSG00000019933) #7	ZNF879 (ENSMMSG00000019906)	ZNF354C (ENSMMSG00000024233)	FLT4 (ENSMMSG00000024202)
Bovidae	ANCESTRAL SPECIES		ENSGT00550000075064	ENSGT00730000111029.e.a	ENSGT00940000162570	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a.b #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A.kd.b #22	ENSGT00940000154756.A.ld #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT00390000009510 #27	ENSGT00390000008694.b.b.c.b.cb.b	ENSGT00940000162743 #9	ENSGT00940000162181 #8	ENSGT01030000234648.a.b.a.b #7	ENSGT00940000162816	ENSGT00940000162715	ENSGT00940000156647	ENSGT00940000158334	ENSGT00940000153503.a.a
Caprinae	ANCESTRAL SPECIES	32	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00730000111029.e.a	ENSGT00940000162570	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a.b #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A.ld #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT00390000009510 #27	ENSGT00390000008694.b.b.c.b.cb.b	ENSGT00940000162743 #9	ENSGT00940000162181 #8	ENSGT01030000234648.a.b.a.b #7	ENSGT00940000162816	ENSGT00940000162715	ENSGT00940000156647	ENSGT00940000158334.a	ENSGT00940000153503.a.a
Rambouillet Sheep	MODERN SPECIES	21	C1orf35 (ENSOARG00020018506) #17	MRPL55 (ENSOARG00020018459) #18	GUK1 (ENSOARG00020018354) #19	GJC2 (ENSOARG00020018337) #20	IBA57 (ENSOARG00020018299) #21	TRIM11 (ENSOARG00020017090) #23	TRIM17 (ENSOARG00020017007) #24	H3-4 (ENSOARG00020016979) #25	H2AC25 (ENSOARG00020016951) #26	HIST3H2BB (ENSOARG00020016921)	RNF187 (ENSOARG00020016886) #27	ZFP2 (ENSOARG00020016872) #9	ZNF454 (ENSOARG00020016811) #8	GRM6 (ENSOARG00020016554) #7	ZNF354C (ENSOARG00020016338)	ENSOARG00020016295 #22	ADAMTS2 (ENSOARG00020015867)	ENSOARG00020015796	ENSOARG00020015427	HNRNPH1 (ENSOARG00020015212)	ENSOARG00020015166	CANX (ENSOARG00020014950)	MAML1 (ENSOARG00020014863)	LTC4S (ENSOARG00020014721)	MGAT4B (ENSOARG00020014516)	ENSOARG00020014482	SQSTM1 (ENSOARG00020014013)	ENSOARG00020013856	ENSOARG00020013782	ENSOARG00020013747	ENSOARG00020013692
Goat	MODERN SPECIES	26	GMIP (ENSCHIG00000006935)	ATP13A1 (ENSCHIG00000027146)	ENSCHIG00000027175	ZNF354B (ENSCHIG00000024384)	JMJD4 (ENSCHIG00000001908) #11	SNAP47 (ENSCHIG00000025042) #12	ENSCHIG00000004906	WNT9A (ENSCHIG00000009523) #14	WNT3A (ENSCHIG00000016159) #15	ARF1 (ENSCHIG00000010924) #16	C1orf35 (ENSCHIG00000020666) #17	MRPL55 (ENSCHIG00000024153) #18	GUK1 (ENSCHIG00000020301) #19	GJC2 (ENSCHIG00000012045) #20	IBA57 (ENSCHIG00000025813) #21	OBSCN (ENSCHIG00000026141) #22	TRIM11 (ENSCHIG00000010660) #23	TRIM17 (ENSCHIG00000017072) #24	H3-4 (ENSCHIG00000008243) #25	H2AC25 (ENSCHIG00000006649) #26	H2BC26 (ENSCHIG00000009284)	RNF187 (ENSCHIG00000012732) #27	ENSCHIG00000025835	ZFP2 (ENSCHIG00000010314) #9	ZNF454 (ENSCHIG00000013008) #8	GRM6 (ENSCHIG00000024892) #7	ZNF879 (ENSCHIG00000020873)	ZNF354C (ENSCHIG00000014371)	ADAMTS2 (ENSCHIG00000027055)	RUFY1 (ENSCHIG00000025380)	HNRNPH1 (ENSCHIG00000021285)
Bovinae	ANCESTRAL SPECIES																	ENSGT00940000154756.A.ld #22
Bos	ANCESTRAL SPECIES																	ENSGT00940000154756.A.ld #22
Bos_b	ANCESTRAL SPECIES																	ENSGT00940000154756.A.ld #22
Hybrid Bos Indicus	MODERN SPECIES	26	ENSBIXG00005000504	JMJD4 (ENSBIXG00005005916) #11	SNAP47 (ENSBIXG00005011285) #12	ENSBIXG00005011259	ENSBIXG00005001061	ENSBIXG00005011249	PRSS38 (ENSBIXG00005011238) #13	WNT9A (ENSBIXG00005006783) #14	WNT3A (ENSBIXG00005011222) #15	ARF1 (ENSBIXG00005011212) #16	C1orf35 (ENSBIXG00005001035) #17	MRPL55 (ENSBIXG00005011160) #18	GUK1 (ENSBIXG00005011045) #19	IBA57 (ENSBIXG00005010975) #21	ENSBIXG00005010951	OBSCN (ENSBIXG00005010529) #22	ENSBIXG00005029278	TRIM11 (ENSBIXG00005029289) #23	TRIM17 (ENSBIXG00005029306) #24	H3-4 (ENSBIXG00005029320) #25	ENSBIXG00005029327	H2AC25 (ENSBIXG00005029330) #26	H2BC26 (ENSBIXG00005029334)	RNF187 (ENSBIXG00005029336) #27	ZNF454 (ENSBIXG00005029356) #8	GRM6 (ENSBIXG00005029370) #7	ZNF354C (ENSBIXG00005029390)	ADAMTS2 (ENSBIXG00005029444)	RUFY1 (ENSBIXG00005029537)	HNRNPH1 (ENSBIXG00005029588)	ENSBIXG00005029650
American bison	DUPLICATION
American bison	MODERN SPECIES	3165	GMIP (ENSBBBG00000016022)	ATP13A1 (ENSBBBG00000003990)	ENSBBBG00000016056	ZNF354B (ENSBBBG00000016063)	JMJD4 (ENSBBBG00000016083) #11	SNAP47 (ENSBBBG00000007139) #12	PRSS38 (ENSBBBG00000016108) #13	WNT9A (ENSBBBG00000016116) #14	WNT3A (ENSBBBG00000016145) #15	ARF1 (ENSBBBG00000016170) #16	C1orf35 (ENSBBBG00000016183) #17	MRPL55 (ENSBBBG00000004037) #18	GUK1 (ENSBBBG00000004041) #19	IBA57 (ENSBBBG00000016303) #21	ENSBBBG00000016321	ENSBBBG00000016327 #22	ENSBBBG00000016344 #22	ENSBBBG00000016350 #22	ENSBBBG00000016357 #22	ENSBBBG00000016369 #22	TRIM11 (ENSBBBG00000016378) #23	TRIM17 (ENSBBBG00000016399) #24	H3-4 (ENSBBBG00000004059) #25
American bison	MODERN SPECIES	3165	ATP13A1 (ENSBBBG00000003990)	ENSBBBG00000016056	ZNF354B (ENSBBBG00000016063)	JMJD4 (ENSBBBG00000016083) #11	SNAP47 (ENSBBBG00000007139) #12	PRSS38 (ENSBBBG00000016108) #13	WNT9A (ENSBBBG00000016116) #14	WNT3A (ENSBBBG00000016145) #15	ARF1 (ENSBBBG00000016170) #16	C1orf35 (ENSBBBG00000016183) #17	MRPL55 (ENSBBBG00000004037) #18	GUK1 (ENSBBBG00000004041) #19	IBA57 (ENSBBBG00000016303) #21	ENSBBBG00000016321	ENSBBBG00000016327 #22	ENSBBBG00000016344 #22	ENSBBBG00000016350 #22	ENSBBBG00000016357 #22	ENSBBBG00000016369 #22	TRIM11 (ENSBBBG00000016378) #23	TRIM17 (ENSBBBG00000016399) #24	H3-4 (ENSBBBG00000004059) #25
Eulipotyphla	ANCESTRAL SPECIES	2563																ENSGT00940000154756.A #22	ENSGT00390000016274
Common shrew	DUPLICATION
Common shrew	MODERN SPECIES	3800															ENSSARG00000009329 #22	ENSSARG00000009473 #22
Common shrew	MODERN SPECIES	3800																ENSSARG00000009329 #22	ENSSARG00000009473 #22
Hedgehog	MODERN SPECIES	5498																ENSEEUG00000012792 #22	ENSEEUG00000013297
Euarchontoglires	ANCESTRAL SPECIES	25	ENSGT01090000260044.A.b.a.a.a.b #33	ENSGT01100000263548.b.a.a.a.a.a	ENSGT00940000162415 #32	ENSGT00940000161967 #30	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000163997 #28
Primates	ANCESTRAL SPECIES	30	ENSGT01090000260044.A.b.a.a.a.b #33	ENSGT01100000263548.b.a.a.a.a.a	ENSGT00940000162415 #32	ENSGT00940000161967 #30	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000163997 #28
Strepsirrhini	ANCESTRAL SPECIES	52		ENSGT00940000164205	ENSGT01100000263507.D.a.a.b.b.b.b.b	ENSGT00940000153165.a.a.d.j	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000163997 #28
Bushbaby	MODERN SPECIES	400			ENSOGAG00000028076	ENSOGAG00000003566	JMJD4 (ENSOGAG00000004942) #11	SNAP47 (ENSOGAG00000004945) #12	PRSS38 (ENSOGAG00000026355) #13	WNT9A (ENSOGAG00000013474) #14	WNT3A (ENSOGAG00000013493) #15	ARF1 (ENSOGAG00000010974) #16	C1orf35 (ENSOGAG00000010978) #17	MRPL55 (ENSOGAG00000010981) #18	GUK1 (ENSOGAG00000029450) #19	GJC2 (ENSOGAG00000033132) #20	IBA57 (ENSOGAG00000009178) #21	ENSOGAG00000030331 #22	TRIM11 (ENSOGAG00000009216) #23	TRIM17 (ENSOGAG00000009217) #24	H3-4 (ENSOGAG00000031879) #25	H2AC25 (ENSOGAG00000009219) #26	H2BC26 (ENSOGAG00000009221)	ENSOGAG00000031086	RNF187 (ENSOGAG00000011214) #27	ENSOGAG00000030822
Lemuriformes	ANCESTRAL SPECIES	18	ENSGT00940000160555	ENSGT00530000063927.a.b	ENSGT00940000157559	ENSGT00940000159259.b	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000163997 #28
Lemuriformes_a	ANCESTRAL SPECIES	88	ENSGT00940000160555	ENSGT00530000063927.a.b	ENSGT00940000157559	ENSGT00940000159259.b	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000163997 #28
Greater bamboo lemur	DUPLICATION
Greater bamboo lemur	MODERN SPECIES	769									ENSPSMG00000013201 #15	ARF1 (ENSPSMG00000013226) #16	C1orf35 (ENSPSMG00000013245) #17	MRPL55 (ENSPSMG00000013256) #18	GUK1 (ENSPSMG00000013269) #19	GJC2 (ENSPSMG00000013273) #20	IBA57 (ENSPSMG00000013279) #21	ENSPSMG00000013283 #22	ENSPSMG00000013289 #22	TRIM11 (ENSPSMG00000013308) #23	TRIM17 (ENSPSMG00000013322) #24	ENSPSMG00000013327	ENSPSMG00000013337 ##26	H2BC26 (ENSPSMG00000013352)	ENSPSMG00000013365
Greater bamboo lemur	MODERN SPECIES	769								ENSPSMG00000013201 #15	ARF1 (ENSPSMG00000013226) #16	C1orf35 (ENSPSMG00000013245) #17	MRPL55 (ENSPSMG00000013256) #18	GUK1 (ENSPSMG00000013269) #19	GJC2 (ENSPSMG00000013273) #20	IBA57 (ENSPSMG00000013279) #21	ENSPSMG00000013283 #22	ENSPSMG00000013289 #22	TRIM11 (ENSPSMG00000013308) #23	TRIM17 (ENSPSMG00000013322) #24	ENSPSMG00000013327	ENSPSMG00000013337 ##26	H2BC26 (ENSPSMG00000013352)	ENSPSMG00000013365
Coquerels sifaka	MODERN SPECIES	234	PARP4 (ENSPCOG00000022852)	CENPJ (ENSPCOG00000016218)	RNF17 (ENSPCOG00000020211)	ATP12A (ENSPCOG00000025271)	ENSPCOG00000024700	JMJD4 (ENSPCOG00000019446) #11	SNAP47 (ENSPCOG00000012484) #12	PRSS38 (ENSPCOG00000019582) #13	WNT9A (ENSPCOG00000015468) #14	WNT3A (ENSPCOG00000024931) #15	ARF1 (ENSPCOG00000026770) #16	C1orf35 (ENSPCOG00000025028) #17	MRPL55 (ENSPCOG00000013827) #18	GUK1 (ENSPCOG00000009766) #19	IBA57 (ENSPCOG00000028589) #21	OBSCN (ENSPCOG00000028285) #22	TRIM11 (ENSPCOG00000016532) #23	TRIM17 (ENSPCOG00000026287) #24	H3-4 (ENSPCOG00000026493) #25	H2AC25 (ENSPCOG00000013826) #26	H2BC26 (ENSPCOG00000003934)	ENSPCOG00000005164	RNF187 (ENSPCOG00000002810) #27	ENSPCOG00000024361	ENSPCOG00000026534
Mouse lemur	MODERN SPECIES	4	PARP4 (ENSMICG00000028028)	CENPJ (ENSMICG00000010400)	RNF17 (ENSMICG00000010364)	ATP12A (ENSMICG00000007697)	ENSMICG00000042765	JMJD4 (ENSMICG00000036474) #11	SNAP47 (ENSMICG00000029011) #12	PRSS38 (ENSMICG00000042943) #13	WNT9A (ENSMICG00000047095) #14	WNT3A (ENSMICG00000010671) #15	ARF1 (ENSMICG00000047362) #16	C1orf35 (ENSMICG00000027688) #17	MRPL55 (ENSMICG00000031760) #18	GUK1 (ENSMICG00000003322) #19	IBA57 (ENSMICG00000041871) #21	OBSCN (ENSMICG00000000557) #22	TRIM11 (ENSMICG00000029090) #23	TRIM17 (ENSMICG00000013315) #24	H3-4 (ENSMICG00000045112) #25	H2AC25 (ENSMICG00000044054) #26	H2BC26 (ENSMICG00000041996)	ENSMICG00000048090	ENSMICG00000038421	ENSMICG00000046509	ENSMICG00000045969	ENSMICG00000026371	ENSMICG00000026956	ENSMICG00000047302	MCF2L (ENSMICG00000033069)	F7 (ENSMICG00000032148)	F10 (ENSMICG00000028391)
Haplorrhini	ANCESTRAL SPECIES	46	ENSGT01090000260044.A.b.a.a.a.b #33	ENSGT00940000162415 #32	ENSGT00940000161967 #30	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00390000016274	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000163997 #28
Tarsier	MODERN SPECIES	5065	ZNF669 (ENSTSYG00000003204)	ENSTSYG00000034800	ENSTSYG00000002726	ENSTSYG00000028507	JMJD4 (ENSTSYG00000000484) #11	SNAP47 (ENSTSYG00000034505) #12	PRSS38 (ENSTSYG00000011299) #13	WNT9A (ENSTSYG00000025543) #14	WNT3A (ENSTSYG00000027346) #15	ARF1 (ENSTSYG00000027538) #16	CUNH1orf35 (ENSTSYG00000031003) #17	MRPL55 (ENSTSYG00000002932) #18	GUK1 (ENSTSYG00000001325) #19	IBA57 (ENSTSYG00000014591) #21	ENSTSYG00000006833	OBSCN (ENSTSYG00000031392) #22	TRIM11 (ENSTSYG00000029832) #23	TRIM17 (ENSTSYG00000008473) #24	H3-4 (ENSTSYG00000037257) #25	H2AC25 (ENSTSYG00000026130) #26	H2BC26 (ENSTSYG00000029005)	ENSTSYG00000036415
Simiiformes	ANCESTRAL SPECIES	33	ENSGT00940000162415 #32	ENSGT00940000161967 #30	ENSGT00910000148176	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00390000016274	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000163997 #28
Catarrhini	ANCESTRAL SPECIES	10	ENSGT00910000148176	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00860000136121	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00390000017697.a.n	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00390000016274	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000163997 #28
Cercopithecidae	ANCESTRAL SPECIES	20	ENSGT00940000153165.a.a.d.i.a	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00860000136121	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00390000017697.a.n	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00390000016274	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27
Cercopithecinae	ANCESTRAL SPECIES	18	ENSGT01090000260030.b	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00860000136121	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00390000017697.a.n	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00390000016274	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27
Vervet Monkey	MODERN SPECIES	17	COQ8A (ENSCSAG00000016382)	CDC42BPA (ENSCSAG00000016402)	ENSCSAG00000016411	JMJD4 (ENSCSAG00000016420) #11	SNAP47 (ENSCSAG00000016423) #12	PRSS38 (ENSCSAG00000016434) #13	WNT9A (ENSCSAG00000016440) #14	WNT3A (ENSCSAG00000016455) #15	ARF1 (ENSCSAG00000016460) #16	C1orf35 (ENSCSAG00000016465) #17	MRPL55 (ENSCSAG00000016477) #18	GUK1 (ENSCSAG00000016494) #19	GJC2 (ENSCSAG00000000269) #20	IBA57 (ENSCSAG00000016503) #21	ENSCSAG00000000270	OBSCN (ENSCSAG00000016528) #22	TRIM11 (ENSCSAG00000016542) #23	TRIM17 (ENSCSAG00000016546) #24	H2AC25 (ENSCSAG00000000271) #26	H2BC26 (ENSCSAG00000000272)	ENSCSAG00000000273	RNF187 (ENSCSAG00000016553) #27
Cercopithecinae_a	DUPLICATION
Cercopithecinae_a	ANCESTRAL SPECIES																	ENSGT00940000154756.A.uc #22
Cercopithecinae_b	ANCESTRAL SPECIES																	ENSGT00940000154756.A.uc #22
Cercopithecinae_d	ANCESTRAL SPECIES																	ENSGT00940000154756.A.uc #22
Sooty mangabey	MODERN SPECIES	269	SNAP47 (ENSCATG00000017110) #12	ENSCATG00000032383	PRSS38 (ENSCATG00000028007) #13	WNT9A (ENSCATG00000037437) #14	WNT3A (ENSCATG00000024249) #15	ENSCATG00000026444	ENSCATG00000034162 #16	C1orf35 (ENSCATG00000036828) #17	MRPL55 (ENSCATG00000001114) #18	ENSCATG00000030372 #19	GJC2 (ENSCATG00000043427) #20	IBA57 (ENSCATG00000033547) #21	ENSCATG00000033121	ENSCATG00000015518 #22	ENSCATG00000018563	ENSCATG00000028342 #22	TRIM11 (ENSCATG00000037992) #23	TRIM17 (ENSCATG00000004723) #24	H3-4 (ENSCATG00000015110) #25	H2AC25 (ENSCATG00000019930) #26	H2BC26 (ENSCATG00000043414)	ENSCATG00000016310	ENSCATG00000036222 #27
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00910000148086	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00860000136121	ENSGT00950000183080.a.b.a.b.b.`b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00390000017697.a.n	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00390000016274	ENSGT00940000154756.A.vc #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00390000013340	ENSGT00550000076417	ENSGT00940000154842.a.b	ENSGT00940000153464.A.b.a	ENSGT00940000157769	ENSGT00940000168189	ENSGT00940000163577	ENSGT00510000046975.b.t
Macaca	ANCESTRAL SPECIES		ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00910000148086	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00860000136121	ENSGT00950000183080.a.b.a.b.b.`b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00390000017697.a.n	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00390000016274	ENSGT00940000154756.A.vc #22	ENSGT00440000034918.q.a.a.a.d.l.a.b	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00390000013340	ENSGT00940000154842.a.b	ENSGT00940000153464.A.b.a	ENSGT00940000157769	ENSGT00940000163577	ENSGT00510000046975.b.t	ENSGT00390000007598
Pig-tailed macaque	MODERN SPECIES	288					WNT9A (ENSMNEG00000028905) #14	WNT3A (ENSMNEG00000037152) #15	ENSMNEG00000038219	ARF1 (ENSMNEG00000037278) #16	C1orf35 (ENSMNEG00000029724) #17	MRPL55 (ENSMNEG00000036387) #18	ENSMNEG00000035833	ENSMNEG00000028444 #19	GJC2 (ENSMNEG00000000224) #20	IBA57 (ENSMNEG00000037320) #21	ENSMNEG00000033684	OBSCN (ENSMNEG00000039875) #22	ENSMNEG00000022017	TRIM11 (ENSMNEG00000029145) #23	TRIM17 (ENSMNEG00000033783) #24	H3-4 (ENSMNEG00000018662) #25	H2AC25 (ENSMNEG00000011405) #26	H2BC26 (ENSMNEG00000007106)	ENSMNEG00000023271	RNF187 (ENSMNEG00000041115) #27
Cercopithecinae_b	ANCESTRAL SPECIES	3	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00910000148086	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00860000136121	ENSGT00950000183080.a.b.a.b.b.`b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00440000034918.q.a.a.a.d.l.a.b	ENSGT00390000016274	ENSGT00940000154756.A.vc #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510.a #27	ENSGT00390000013340	ENSGT00550000076417	ENSGT00940000154842.a.b	ENSGT00940000153464.A.b.a	ENSGT00940000157769	ENSGT00940000168189	ENSGT00940000163577	ENSGT00510000046975.b.t
Olive baboon	MODERN SPECIES		CDC42BPA (ENSPANG00000007777)	ENSPANG00000048983	ENSPANG00000048924	JMJD4 (ENSPANG00000031507) #11	SNAP47 (ENSPANG00000017951) #12	PRSS38 (ENSPANG00000024006) #13	WNT9A (ENSPANG00000048565) #14	WNT3A (ENSPANG00000019711) #15	ENSPANG00000004523 #16	C1orf35 (ENSPANG00000009889) #17	MRPL55 (ENSPANG00000017717) #18	ENSPANG00000020945 #19	GJC2 (ENSPANG00000035104) #20	IBA57 (ENSPANG00000021033) #21	ENSPANG00000030630	ENSPANG00000035184 #22	TRIM11 (ENSPANG00000004478) #23	TRIM17 (ENSPANG00000014849) #24	H3-4 (ENSPANG00000032788) #25	H2AC25 (ENSPANG00000039633) #26	H2BC26 (ENSPANG00000042066)	ENSPANG00000050063	HSD17B7 (ENSPANG00000026079)	ENSPANG00000045838	DDR2 (ENSPANG00000011453)	ENSPANG00000046218	UAP1 (ENSPANG00000001322)	UHMK1 (ENSPANG00000001321)	SH2D1B (ENSPANG00000041929)	SPATA46 (ENSPANG00000004524)	ENSPANG00000023226
Cercopithecinae_d	ANCESTRAL SPECIES	160	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00910000148086	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00860000136121	ENSGT00950000183080.a.b.a.b.b.`b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00440000034918.q.a.a.a.d.l.a.b	ENSGT00390000016274	ENSGT00940000154756.A.vc #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510.a #27
Sooty mangabey	MODERN SPECIES	269	ENSCATG00000028870	JMJD4 (ENSCATG00000030697) #11	SNAP47 (ENSCATG00000017110) #12	ENSCATG00000032383	PRSS38 (ENSCATG00000028007) #13	WNT9A (ENSCATG00000037437) #14	WNT3A (ENSCATG00000024249) #15	ENSCATG00000026444	ENSCATG00000034162 #16	C1orf35 (ENSCATG00000036828) #17	MRPL55 (ENSCATG00000001114) #18	ENSCATG00000030372 #19	GJC2 (ENSCATG00000043427) #20	IBA57 (ENSCATG00000033547) #21	ENSCATG00000033121	ENSCATG00000015518 #22	ENSCATG00000018563	ENSCATG00000028342 #22	TRIM11 (ENSCATG00000037992) #23	TRIM17 (ENSCATG00000004723) #24	H3-4 (ENSCATG00000015110) #25	H2AC25 (ENSCATG00000019930) #26	H2BC26 (ENSCATG00000043414)	ENSCATG00000016310	ENSCATG00000036222 #27
Drill	MODERN SPECIES	1468		ZNF678 (ENSMLEG00000030111)	ENSMLEG00000029152	JMJD4 (ENSMLEG00000038450) #11	SNAP47 (ENSMLEG00000028118) #12	PRSS38 (ENSMLEG00000031236) #13	WNT9A (ENSMLEG00000041830) #14	WNT3A (ENSMLEG00000034108) #15	ENSMLEG00000010724	ARF1 (ENSMLEG00000040308) #16	C1orf35 (ENSMLEG00000044367) #17	MRPL55 (ENSMLEG00000043407) #18	ENSMLEG00000033820 #19	IBA57 (ENSMLEG00000035651) #21	ENSMLEG00000000202	OBSCN (ENSMLEG00000039921) #22	TRIM11 (ENSMLEG00000035665) #23	TRIM17 (ENSMLEG00000036683) #24	H3-4 (ENSMLEG00000027834) #25	H2AC25 (ENSMLEG00000019082) #26	H2BC26 (ENSMLEG00000011931)	ENSMLEG00000027649
Rhinopithecus	ANCESTRAL SPECIES	247	ENSGT00390000012563.m.b.b	ENSGT00910000147389	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00860000136121	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00390000016274	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27
Black snub-nosed monkey	MODERN SPECIES	736						WNT9A (ENSRBIG00000036258) #14	WNT3A (ENSRBIG00000039877) #15	ENSRBIG00000040413	ARF1 (ENSRBIG00000043809) #16	C1orf35 (ENSRBIG00000032408) #17	MRPL55 (ENSRBIG00000038180) #18	ENSRBIG00000030901 #19	GJC2 (ENSRBIG00000039202) #20	IBA57 (ENSRBIG00000042111) #21	ENSRBIG00000031054	OBSCN (ENSRBIG00000044496) #22	TRIM11 (ENSRBIG00000027735) #23	TRIM17 (ENSRBIG00000017974) #24	H3-4 (ENSRBIG00000029468) #25	H2AC25 (ENSRBIG00000024183) #26	H2BC26 (ENSRBIG00000013451)	ENSRBIG00000029298
Golden snub-nosed monkey	MODERN SPECIES	1428																OBSCN (ENSRROG00000044144) #22	TRIM11 (ENSRROG00000036560) #23	TRIM17 (ENSRROG00000035878) #24	H3-4 (ENSRROG00000010623) #25	H2AC25 (ENSRROG00000007919) #26	H2BC26 (ENSRROG00000024891)	ENSRROG00000023607	RNF187 (ENSRROG00000024808) #27
Hominoidea	ANCESTRAL SPECIES	7	ENSGT00910000147389	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00860000136121	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00390000017697.a.n	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00390000016274	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000163997 #28	ENSGT00940000156644	ENSGT00910000146652	ENSGT00940000157464	ENSGT00500000045533	ENSGT00390000003512	ENSGT00940000156048.b	ENSGT00390000011529
Gibbon	MODERN SPECIES	20	CDC42BPA (ENSNLEG00000013980)	ZNF678 (ENSNLEG00000008917)	ENSNLEG00000031801	JMJD4 (ENSNLEG00000032639) #11	SNAP47 (ENSNLEG00000014097) #12	PRSS38 (ENSNLEG00000014112) #13	WNT9A (ENSNLEG00000014116) #14	WNT3A (ENSNLEG00000014118) #15	ENSNLEG00000029254	ARF1 (ENSNLEG00000014137) #16	ENSNLEG00000033210 #17	ENSNLEG00000014215 #18	ENSNLEG00000014235 #19	IBA57 (ENSNLEG00000014263) #21	ENSNLEG00000033321	ENSNLEG00000014265 #22	TRIM11 (ENSNLEG00000014315) #23	TRIM17 (ENSNLEG00000014332) #24	H3-4 (ENSNLEG00000031785) #25	H2AC25 (ENSNLEG00000033352) #26	H2BC26 (ENSNLEG00000033656)	ENSNLEG00000029943	RHOU (ENSNLEG00000027920)	ENSNLEG00000027599	RAB4A (ENSNLEG00000014339)	ENSNLEG00000032941	ENSNLEG00000014345	ACTA1 (ENSNLEG00000014347)	NUP133 (ENSNLEG00000014372)	ABCB10 (ENSNLEG00000014442)	TAF5L (ENSNLEG00000014446)
Hominidae	ANCESTRAL SPECIES	6	ENSGT00940000154251.A.a.a.a	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00860000136121	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00390000017697.a.n	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00390000016274	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000163997 #28	ENSGT00940000156644	ENSGT00940000157464	ENSGT00390000003512	ENSGT00940000156048.b	ENSGT00390000011529	ENSGT00910000148069	ENSGT00940000157680
Orangutan	MODERN SPECIES		COQ8A (ENSPPYG00000000159)	CDC42BPA (ENSPPYG00000000158)	ENSPPYG00000000155	JMJD4 (ENSPPYG00000000154) #11	SNAP47 (ENSPPYG00000000153) #12	PRSS38 (ENSPPYG00000000152) #13	WNT9A (ENSPPYG00000000151) #14	WNT3A (ENSPPYG00000000150) #15	ENSPPYG00000000149	ARF1 (ENSPPYG00000000148) #16	C1orf35 (ENSPPYG00000000147) #17	ENSPPYG00000000146 #18	ENSPPYG00000000145 #19	GJC2 (ENSPPYG00000000144) #20	IBA57 (ENSPPYG00000039751) #21	ENSPPYG00000000139 #22	ENSPPYG00000000138 #23	TRIM17 (ENSPPYG00000000137) #24	H3-4 (ENSPPYG00000000136) #25	H2AC25 (ENSPPYG00000030037) #26	H2BC26 (ENSPPYG00000039326)	ENSPPYG00000040985	RNF187 (ENSPPYG00000041257) #27	ENSPPYG00000000133 #28	ENSPPYG00000000131	RHOU (ENSPPYG00000000130)	RAB4A (ENSPPYG00000000128)	CCSAP (ENSPPYG00000039997)	ACTA1 (ENSPPYG00000000127)	NUP133 (ENSPPYG00000000126)	ABCB10 (ENSPPYG00000000125)
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	6	ENSGT00940000159380 #11	ENSGT00910000147389	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00860000136121	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00390000017697.a.n	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00390000016274	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000156644	ENSGT00940000157464	ENSGT00390000003512	ENSGT00940000156048.b	ENSGT00390000011529	ENSGT00910000148069	ENSGT00940000157680	ENSGT00940000153342.b.w
Homo/Pan group	ANCESTRAL SPECIES	7	ENSGT00940000159380 #11	ENSGT00910000147389	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00860000136121	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00390000017697.a.n	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00390000016274	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000156644	ENSGT00940000157464	ENSGT00390000003512	ENSGT00940000156048.b	ENSGT00390000011529	ENSGT00910000148069	ENSGT00940000157680	ENSGT00940000153342.b.w
Pan	ANCESTRAL SPECIES		ENSGT00940000159380 #11	ENSGT00910000147389	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00860000136121	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00390000017697.a.n	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00390000016274	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000156644	ENSGT00940000157464	ENSGT00390000003512	ENSGT00940000156048.b	ENSGT00390000011529	ENSGT00910000148069	ENSGT00940000157680	ENSGT00940000153342.b.w
Bonobo	MODERN SPECIES		ENSPPAG00000042694	JMJD4 (ENSPPAG00000041921) #11	ENSPPAG00000043934	SNAP47 (ENSPPAG00000030087) #12	PRSS38 (ENSPPAG00000029608) #13	WNT9A (ENSPPAG00000040433) #14	WNT3A (ENSPPAG00000033514) #15	ENSPPAG00000003062	ARF1 (ENSPPAG00000029612) #16	ENSPPAG00000031412 #17	ENSPPAG00000030545 #18	ENSPPAG00000030143	ENSPPAG00000031110 #19	ENSPPAG00000034125 #21	ENSPPAG00000037707	OBSCN (ENSPPAG00000039604) #22	TRIM11 (ENSPPAG00000018913) #23	TRIM17 (ENSPPAG00000018691) #24	H3-4 (ENSPPAG00000020018) #25	H2AC25 (ENSPPAG00000013459) #26	H2BC26 (ENSPPAG00000025721)	ENSPPAG00000001893	ENSPPAG00000034335	RAB4A (ENSPPAG00000036595)	ACTA1 (ENSPPAG00000033916)	NUP133 (ENSPPAG00000035148)	ENSPPAG00000025609	ABCB10 (ENSPPAG00000012448)	TAF5L (ENSPPAG00000034307)	URB2 (ENSPPAG00000040629)	ENSPPAG00000004114
Chimpanzee	MODERN SPECIES		JMJD4 (ENSPTRG00000002059) #11	ENSPTRG00000048948	SNAP47 (ENSPTRG00000002060) #12	PRSS38 (ENSPTRG00000002061) #13	WNT9A (ENSPTRG00000002062) #14	WNT3A (ENSPTRG00000002064) #15	ENSPTRG00000046943	ARF1 (ENSPTRG00000002066) #16	C1H1orf35 (ENSPTRG00000002067) #17	MRPL55 (ENSPTRG00000002068) #18	ENSPTRG00000051540	GUK1 (ENSPTRG00000002069) #19	GJC2 (ENSPTRG00000002070) #20	IBA57 (ENSPTRG00000002072) #21	ENSPTRG00000002073	OBSCN (ENSPTRG00000046375) #22	TRIM11 (ENSPTRG00000002071) #23	TRIM17 (ENSPTRG00000002076) #24	H3-4 (ENSPTRG00000052362) #25	H2AC25 (ENSPTRG00000047640) #26	H2BC26 (ENSPTRG00000050958)	ENSPTRG00000048372	H2BC27 (ENSPTRG00000049906)	RNF187 (ENSPTRG00000002079) #27	RHOU (ENSPTRG00000045909)	RAB4A (ENSPTRG00000002083)	CCSAP (ENSPTRG00000002085)	ACTA1 (ENSPTRG00000002086)	NUP133 (ENSPTRG00000002088)	ABCB10 (ENSPTRG00000002090)	TAF5L (ENSPTRG00000002091)
Human	MODERN SPECIES		PSEN2 (ENSG00000143801)	COQ8A (ENSG00000163050)	CDC42BPA (ENSG00000143776)	ZNF678 (ENSG00000181450)	SNAP47 (ENSG00000143740) #12	JMJD4 (ENSG00000081692) #11	PRSS38 (ENSG00000185888) #13	WNT9A (ENSG00000143816) #14	WNT3A (ENSG00000154342) #15	ARF1 (ENSG00000143761) #16	C1orf35 (ENSG00000143793) #17	MRPL55 (ENSG00000162910) #18	GUK1 (ENSG00000143774) #19	GJC2 (ENSG00000198835) #20	IBA57 (ENSG00000181873) #21	OBSCN (ENSG00000154358) #22	TRIM11 (ENSG00000154370) #23	TRIM17 (ENSG00000162931) #24	H3-4 (ENSG00000168148) #25	H2AC25 (ENSG00000181218) #26	H2BC26 (ENSG00000196890)	RNF187 (ENSG00000168159) #27	RHOU (ENSG00000116574)	RAB4A (ENSG00000168118)	CCSAP (ENSG00000154429)	ACTA1 (ENSG00000143632)	NUP133 (ENSG00000069248)	ABCB10 (ENSG00000135776)	TAF5L (ENSG00000135801)	URB2 (ENSG00000135763)	GALNT2 (ENSG00000143641)
Gorilla	MODERN SPECIES		ENSGGOG00000037683	SNAP47 (ENSGGOG00000008442) #12	PRSS38 (ENSGGOG00000012849) #13	WNT9A (ENSGGOG00000004569) #14	ENSGGOG00000037788	WNT3A (ENSGGOG00000006562) #15	ENSGGOG00000023449	ARF1 (ENSGGOG00000011263) #16	C1orf35 (ENSGGOG00000015702) #17	ENSGGOG00000015709 #18	ENSGGOG00000039931	ENSGGOG00000013567 #19	ENSGGOG00000027354 #20	IBA57 (ENSGGOG00000013646) #21	ENSGGOG00000012820	ENSGGOG00000012717 #22	TRIM11 (ENSGGOG00000016890) #23	TRIM17 (ENSGGOG00000016899) #24	ENSGGOG00000027960 #25	H2AC25 (ENSGGOG00000037094) #26	H2BC26 (ENSGGOG00000039267)	ENSGGOG00000037971	ENSGGOG00000026023 #27	ENSGGOG00000011409	ENSGGOG00000007918	ENSGGOG00000040773	RAB4A (ENSGGOG00000015714)	CCSAP (ENSGGOG00000014931)	ACTA1 (ENSGGOG00000011599)	NUP133 (ENSGGOG00000000930)	ABCB10 (ENSGGOG00000008699)
Platyrrhini	ANCESTRAL SPECIES	55	ENSGT00940000162415 #32	ENSGT00940000161967 #30	ENSGT00910000148176	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b.bb.a #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00390000016274	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000163997 #28
Cebidae	ANCESTRAL SPECIES	23	ENSGT01090000260044.A.b.a.a.a.b #33	ENSGT00940000162415 #32	ENSGT00940000161967 #30	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b.bb.a #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00390000016274	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263504.a.b.b.b.b	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000163997 #28	ENSGT00390000018900	ENSGT00390000004799	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766	ENSGT00940000156992	ENSGT00940000160590
Marmoset	MODERN SPECIES	10	ENSCJAG00000066453	ENSCJAG00000082577	ZNF124 (ENSCJAG00000011765)	ZNF670 (ENSCJAG00000011738)	ZNF669 (ENSCJAG00000048657)	JMJD4 (ENSCJAG00000011727) #11	SNAP47 (ENSCJAG00000039821) #12	WNT9A (ENSCJAG00000080517) #14	WNT3A (ENSCJAG00000016650) #15	ARF1 (ENSCJAG00000041786) #16	C1orf35 (ENSCJAG00000016721) #17	MRPL55 (ENSCJAG00000016730) #18	ENSCJAG00000016738 #19	GJC2 (ENSCJAG00000016746) #20	IBA57 (ENSCJAG00000016749) #21	OBSCN (ENSCJAG00000054288) #22	TRIM11 (ENSCJAG00000016757) #23	TRIM17 (ENSCJAG00000016765) #24	H2AC25 (ENSCJAG00000083637) #26	H2BC26 (ENSCJAG00000077602)	ENSCJAG00000071519	RNF187 (ENSCJAG00000016779) #27	ENSCJAG00000059253 #28	ENSCJAG00000082135	AHCTF1 (ENSCJAG00000016790)	SCCPDH (ENSCJAG00000016806)	CNST (ENSCJAG00000016834)	TFB2M (ENSCJAG00000016845)	ENSCJAG00000055715	SMYD3 (ENSCJAG00000016856)	ENSCJAG00000079381
Cebidae_a	ANCESTRAL SPECIES	11	ENSGT01090000260044.A.b.a.a.a.b #33	ENSGT00940000162415 #32	ENSGT00940000161967 #30	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b.bb.a #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00390000016274	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263504.a.b.b.b.b	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000163997 #28	ENSGT00390000018900	ENSGT00390000004799	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766	ENSGT00940000156992	ENSGT00940000160590
Capuchin	MODERN SPECIES	75	ZNF670 (ENSCCAG00000027449)	ENSCCAG00000031402	ENSCCAG00000021671	JMJD4 (ENSCCAG00000035807) #11	SNAP47 (ENSCCAG00000027134) #12	PRSS38 (ENSCCAG00000020907) #13	WNT9A (ENSCCAG00000030978) #14	WNT3A (ENSCCAG00000009359) #15	ENSCCAG00000023374 #16	C1orf35 (ENSCCAG00000020266) #17	MRPL55 (ENSCCAG00000031724) #18	GUK1 (ENSCCAG00000035707) #19	GJC2 (ENSCCAG00000020287) #20	IBA57 (ENSCCAG00000019844) #21	ENSCCAG00000023630	OBSCN (ENSCCAG00000032571) #22	ENSCCAG00000016195	TRIM11 (ENSCCAG00000036943) #23	TRIM17 (ENSCCAG00000025121) #24	ENSCCAG00000036407	H2AW (ENSCCAG00000012315) #26	H2BU1 (ENSCCAG00000015023)	ENSCCAG00000012567	RNF187 (ENSCCAG00000028705) #27	ENSCCAG00000025344 #28	ENSCCAG00000018435	AHCTF1 (ENSCCAG00000023436)	SCCPDH (ENSCCAG00000022176)	ENSCCAG00000020404	CNST (ENSCCAG00000038009)	TFB2M (ENSCCAG00000028811)
Bolivian squirrel monkey	MODERN SPECIES	114	OR2C3 (ENSSBOG00000028292) ##35	OR2B11 (ENSSBOG00000031196) #33	NLRP3 (ENSSBOG00000030084) #32	ZNF496 (ENSSBOG00000005783) #30	ENSSBOG00000021324	JMJD4 (ENSSBOG00000026344) #11	ENSSBOG00000025438 #12	PRSS38 (ENSSBOG00000025229) #13	WNT9A (ENSSBOG00000025218) #14	WNT3A (ENSSBOG00000020846) #15	ENSSBOG00000030557 #16	C1orf35 (ENSSBOG00000023673) #17	MRPL55 (ENSSBOG00000035388) #18	GUK1 (ENSSBOG00000026897) #19	IBA57 (ENSSBOG00000022497) #21	OBSCN (ENSSBOG00000032380) #22	TRIM11 (ENSSBOG00000005125) #23	TRIM17 (ENSSBOG00000030344) #24	H2AC25 (ENSSBOG00000019953) #26	H2BC26 (ENSSBOG00000008375)	ENSSBOG00000019925	AHCTF1 (ENSSBOG00000004404)	SCCPDH (ENSSBOG00000021995)	CNST (ENSSBOG00000028424)	TFB2M (ENSSBOG00000033950)	ENSSBOG00000035160	SMYD3 (ENSSBOG00000026164)	KIF26B (ENSSBOG00000034697)	EFCAB2 (ENSSBOG00000034755)	HNRNPU (ENSSBOG00000026500)	COX20 (ENSSBOG00000029804)
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	1116	ZNF496 (ENSANAG00000022228) #30	ZNF124 (ENSANAG00000029658)	ZNF670 (ENSANAG00000033492)	ZNF669 (ENSANAG00000013317)	ENSANAG00000022916	JMJD4 (ENSANAG00000028105) #11	SNAP47 (ENSANAG00000035151) #12	WNT9A (ENSANAG00000032624) #14	WNT3A (ENSANAG00000021377) #15	ENSANAG00000036021 #16	C1orf35 (ENSANAG00000020714) #17	MRPL55 (ENSANAG00000036592) #18	GUK1 (ENSANAG00000027172) #19	IBA57 (ENSANAG00000022164) #21	ENSANAG00000029250	OBSCN (ENSANAG00000024031) #22	TRIM11 (ENSANAG00000034240) #23	ENSANAG00000028749 #24	ENSANAG00000022375	H2AC25 (ENSANAG00000031714) #26	H2BC26 (ENSANAG00000010772)	ENSANAG00000031738	ENSANAG00000026087
Mas night monkey	MODERN SPECIES	119																ENSANAG00000024508 #22
Euarchontoglires_A	ANCESTRAL SPECIES	28	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b ##35	ENSGT01090000260044.A.b.a.a.a.b #33	ENSGT00940000162415 #32	ENSGT00940000161967 #30	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000163997 #28
Glires	ANCESTRAL SPECIES	29	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b ##35	ENSGT01090000260044.A.b.a.a.a.b #33	ENSGT00940000162415 #32	ENSGT00940000161967 #30	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000163997 #28
Lagomorpha	ANCESTRAL SPECIES	245									ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25
Pika	MODERN SPECIES	1849													ENSOPRG00000006266 #19	GJC2 (ENSOPRG00000006277) #20	IBA57 (ENSOPRG00000006282) #21	ENSOPRG00000006299 #22	ENSOPRG00000006380	TRIM11 (ENSOPRG00000006293) #23
Rabbit	MODERN SPECIES	793																ENSOCUG00000011505 #22	TRIM11 (ENSOCUG00000038242) #23	TRIM17 (ENSOCUG00000014636) #24	H2BC26 (ENSOCUG00000033562)	ENSOCUG00000022340 #28
Rodentia	ANCESTRAL SPECIES	7	ENSGT01090000260044.A.b.a.a.a.a.a ##33	ENSGT01090000260044.A.b.a.a.a.b #33	ENSGT00940000162415 #32	ENSGT00940000161967 #30	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000163997 #28
Rodentia_A	ANCESTRAL SPECIES	31	ENSGT01090000260044.A.b.a.a.a.a.a ##33	ENSGT01090000260044.A.b.a.a.a.b #33	ENSGT00940000162415 #32	ENSGT00940000161967 #30	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000163997 #28
Hystricomorpha	ANCESTRAL SPECIES	63	ENSGT01090000260044.A.b.a.a.a.a.a.c ##33	ENSGT01090000260044.A.b.a.a.a.b #33	ENSGT00940000162415 #32	ENSGT00940000161967 #30	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000163997 #28
Naked mole-rat female	MODERN SPECIES		ENSHGLG00000000671 #33	ENSHGLG00000043542 #32	ENSHGLG00000001102 #30	ENSHGLG00000047340	JMJD4 (ENSHGLG00000001365) #11	ENSHGLG00000001357 #12	PRSS38 (ENSHGLG00000043627) #13	WNT9A (ENSHGLG00000038418) #14	WNT3A (ENSHGLG00000001502) #15	ARF1 (ENSHGLG00000038119) #16	ENSHGLG00000001640 #17	MRPL55 (ENSHGLG00000048301) #18	GUK1 (ENSHGLG00000000309) #19	GJC2 (ENSHGLG00000033969) #20	IBA57 (ENSHGLG00000002132) #21	OBSCN (ENSHGLG00000047806) #22	TRIM11 (ENSHGLG00000002253) #23	TRIM17 (ENSHGLG00000006970) #24	H3-4 (ENSHGLG00000020558) #25	H2AC25 (ENSHGLG00000037975) #26	H2BC26 (ENSHGLG00000044541)	ENSHGLG00000035981	ENSHGLG00000000597 #27	ENSHGLG00000038457 #28	ENSHGLG00000049243	ENSHGLG00000033964	ENSHGLG00000032928	ENSHGLG00000046686	ENSHGLG00000047273	ENSHGLG00000019679	ENSHGLG00000019790
Hystricomorpha_a	ANCESTRAL SPECIES	79	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b ##35	ENSGT01090000260044.A.b.a.a.a.b #33	ENSGT00940000162415 #32	ENSGT00940000161967 #30	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000163997 #28
Hystricomorpha_b	ANCESTRAL SPECIES	106	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a ##35	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b ##35	ENSGT01090000260044.A.b.a.a.a.b #33	ENSGT00940000162415 #32	ENSGT00940000161967 #30	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000163997 #28	ENSGT00940000160177
Long-tailed chinchilla	MODERN SPECIES	288	OR9H1P (ENSCLAG00000017416)	OR2G3 (ENSCLAG00000017414) #36	ENSCLAG00000000375 ##35	OR2B11 (ENSCLAG00000017578) #33	NLRP3 (ENSCLAG00000000708) #32	ZNF496 (ENSCLAG00000000579) #30	JMJD4 (ENSCLAG00000000501) #11	SNAP47 (ENSCLAG00000000744) #12	WNT9A (ENSCLAG00000000535) #14	WNT3A (ENSCLAG00000000529) #15	ARF1 (ENSCLAG00000000520) #16	C1orf35 (ENSCLAG00000001077) #17	MRPL55 (ENSCLAG00000000917) #18	GUK1 (ENSCLAG00000000853) #19	IBA57 (ENSCLAG00000000741) #21	ENSCLAG00000000505 #22	TRIM11 (ENSCLAG00000000197) #23	TRIM17 (ENSCLAG00000000538) #24	H2BC26 (ENSCLAG00000017444)	ENSCLAG00000017452	RNF187 (ENSCLAG00000001629) #27	ENSCLAG00000001526	ENSCLAG00000001377
Sciuridae	ANCESTRAL SPECIES	55	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b ##35	ENSGT01090000260044.A.b.a.a.a.b #33	ENSGT00940000162415 #32	ENSGT00940000161967 #30	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000163997 #28
Eurasian red squirrel	MODERN SPECIES	15	OR2C3 (ENSSVLG00005004659) ##35	NLRP3 (ENSSVLG00005004506) #32	JMJD4 (ENSSVLG00005004411) #11	SNAP47 (ENSSVLG00005004391) #12	PRSS38 (ENSSVLG00005004365) #13	WNT9A (ENSSVLG00005004346) #14	WNT3A (ENSSVLG00005004327) #15	ENSSVLG00005004310 #16	C1orf35 (ENSSVLG00005004286) #17	MRPL55 (ENSSVLG00005004258) #18	ENSSVLG00005004242	GUK1 (ENSSVLG00005004220) #19	ENSSVLG00005004192	GJC2 (ENSSVLG00005004174) #20	IBA57 (ENSSVLG00005004163) #21	OBSCN (ENSSVLG00005004022) #22	TRIM11 (ENSSVLG00005003920) #23	TRIM17 (ENSSVLG00005003894) #24	H3-4 (ENSSVLG00005003884) #25	H2AC25 (ENSSVLG00005003875) #26	H2BC26 (ENSSVLG00005003865)	ENSSVLG00005003856	RNF187 (ENSSVLG00005003848) #27	ENSSVLG00005003828 #28	ENSSVLG00005003818	ZNF496 (ENSSVLG00005003801) #30
Marmotini	ANCESTRAL SPECIES	100	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a ##35	ENSGT01090000260044.A.b.a.a.a.b #33	ENSGT00940000162415 #32	ENSGT00940000161967 #30	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000163997 #28
Alpin marmot	MODERN SPECIES	56	OR2B11 (ENSMMMG00000017357) #33	NLRP3 (ENSMMMG00000017362) #32	ZNF496 (ENSMMMG00000017364) #30	ENSMMMG00000017372	ENSMMMG00000017378	JMJD4 (ENSMMMG00000017399) #11	SNAP47 (ENSMMMG00000017415) #12	PRSS38 (ENSMMMG00000017421) #13	WNT9A (ENSMMMG00000017429) #14	WNT3A (ENSMMMG00000017437) #15	ENSMMMG00000017464 #16	MRPL55 (ENSMMMG00000017475) #18	GUK1 (ENSMMMG00000017488) #19	GJC2 (ENSMMMG00000017501) #20	IBA57 (ENSMMMG00000017504) #21	OBSCN (ENSMMMG00000017510) #22	TRIM11 (ENSMMMG00000017547) #23	TRIM17 (ENSMMMG00000017550) #24	H3-4 (ENSMMMG00000017555) #25	H2AC25 (ENSMMMG00000017567) #26	H2BC26 (ENSMMMG00000017570)	ENSMMMG00000017596	RNF187 (ENSMMMG00000017598) #27	ENSMMMG00000017603 #28	ENSMMMG00000017616
Rodentia_B	ANCESTRAL SPECIES	46	ENSGT01090000260044.A.b.a.a.a.a.a ##33	ENSGT01090000260044.A.b.a.a.a.b #33	ENSGT00940000162415 #32	ENSGT00940000161967 #30	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000163997 #28	ENSGT00940000160177	ENSGT00940000162246	ENSGT01090000260018.A.a.a.b.b	ENSGT01090000259995.a.a.b.a.b.b	ENSGT01090000259995.a.a.a	ENSGT00390000010671	ENSGT00730000111648
Kangaroo rat	MODERN SPECIES	346										ENSDORG00000027626 #33	Nlrp3 (ENSDORG00000010673) #32	Zkscan17 (ENSDORG00000028040) #30	Wnt9a (ENSDORG00000005390) #14	ENSDORG00000027855 #16	Guk1 (ENSDORG00000007614) #19	Obscn (ENSDORG00000016208) #22	Trim11 (ENSDORG00000029829) #23	H2ac25 (ENSDORG00000026130) #26	H2bc26-ps (ENSDORG00000024270)	ENSDORG00000005512 ##35	Sh3bp5l (ENSDORG00000007183)	Fasl (ENSDORG00000011897)	Suco (ENSDORG00000011895)	Pigc (ENSDORG00000030248)	Dnm3 (ENSDORG00000002505)	Mettl13 (ENSDORG00000011976)	Prrc2c (ENSDORG00000001422)	Fmo1 (ENSDORG00000029306)	Fmo2 (ENSDORG00000004731)	Fmo3 (ENSDORG00000006804)	ENSDORG00000003154
Myomorpha	ANCESTRAL SPECIES	28	ENSGT01090000260044.A.b.a.a.a.b #33	ENSGT00940000162415 #32	ENSGT00940000161967 #30	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000163997 #28	ENSGT00940000160177	ENSGT00390000006224	ENSGT01090000260018.C.b.a.a	ENSGT01090000260018.C.a	ENSGT01090000259995.b.b.a.b	ENSGT01100000263486.a.b.a.b.b.a.a ##35	ENSGT00940000162246
Lesser Egyptian jerboa	MODERN SPECIES	63	Or2b11 (ENSJJAG00000004515) #33	Nlrp3 (ENSJJAG00000007323) #32	Zkscan17 (ENSJJAG00000022828) #30	Zfp867 (ENSJJAG00000008459)	Jmjd4 (ENSJJAG00000012776) #11	Snap47 (ENSJJAG00000023009) #12	Prss38 (ENSJJAG00000022512) #13	Wnt9a (ENSJJAG00000020971) #14	Wnt3a (ENSJJAG00000020598) #15	ENSJJAG00000020245 #16	2310033P09Rik (ENSJJAG00000001888) #17	Mrpl55 (ENSJJAG00000021164) #18	Guk1 (ENSJJAG00000021658) #19	Gjc2 (ENSJJAG00000011405) #20	Iba57 (ENSJJAG00000023432) #21	Obscn (ENSJJAG00000023196) #22	Trim11 (ENSJJAG00000019654) #23	Trim17 (ENSJJAG00000017850) #24	ENSJJAG00000017460 ##25	H2ac25 (ENSJJAG00000004184) #26	H2bc26-ps (ENSJJAG00000003959)	ENSJJAG00000011864 #27	Btnl10 (ENSJJAG00000023413) #28	Zfp39 (ENSJJAG00000018925)	ENSJJAG00000000550	Fam183b (ENSJJAG00000018849)	Or2t44 (ENSJJAG00000018515)	ENSJJAG00000003913 ##35	Trim58 (ENSJJAG00000016816)	Or11l3 (ENSJJAG00000002201)	ENSJJAG00000012885
Muroidea	ANCESTRAL SPECIES	10	ENSGT01090000260044.A.b.a.a.a.b #33	ENSGT00940000162415 #32	ENSGT00940000161967 #30	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000163997 #28	ENSGT00940000160177	ENSGT00390000006224	ENSGT01090000260018.C.b.a.a	ENSGT01090000260018.C.a	ENSGT01090000259995.b.b.a.b	ENSGT01100000263486.a.b.a.b.b.a.a ##35	ENSGT00940000162246
Upper Galilee mountains blind mole rat	MODERN SPECIES	540													Guk1 (ENSNGAG00000022722) #19	Gjc2 (ENSNGAG00000022035) #20	Iba57 (ENSNGAG00000021761) #21	Obscn (ENSNGAG00000023799) #22	Trim11 (ENSNGAG00000023375) #23	Trim17 (ENSNGAG00000023965) #24	ENSNGAG00000011099 ##25	H2ac25 (ENSNGAG00000012071) #26	H2bc26-ps (ENSNGAG00000012301)	H2bc27 (ENSNGAG00000010344)	ENSNGAG00000019603 #27	Btnl10 (ENSNGAG00000011467) #28	Zfp39 (ENSNGAG00000019853)	ENSNGAG00000012548	2810021J22Rik (ENSNGAG00000011744)	ENSNGAG00000024130	Fam183b (ENSNGAG00000019487)	ENSNGAG00000003871	ENSNGAG00000011228
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00940000162415 #32	ENSGT00900000143207	ENSGT00940000161967 #30	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000163997 #28	ENSGT00940000160177	ENSGT00940000159981.e.a	ENSGT00940000159981.e.b	ENSGT01060000248581.C.a.b.a.a	ENSGT00390000006224	ENSGT01090000260018.C.b.a.a	ENSGT01090000260018.C.a
Murinae	ANCESTRAL SPECIES	7	ENSGT00940000162415 #32	ENSGT00900000143207	ENSGT00940000161967 #30	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00950000183522	ENSGT00940000163997 #28	ENSGT00940000160177	ENSGT00940000159981.e.a	ENSGT00940000159981.e.b	ENSGT01060000248581.C.a.b.a.a	ENSGT00390000006224	ENSGT01090000260018.C.b.a.a	ENSGT01090000260018.C.a
Mus	ANCESTRAL SPECIES	2	ENSGT00940000162415 #32	ENSGT00900000143207	ENSGT00940000161967 #30	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00950000183522	ENSGT00940000163997 #28	ENSGT00940000160177	ENSGT00940000159981.e.a	ENSGT00940000159981.e.b	ENSGT00390000006224	ENSGT01090000260018.C.b.a.a	ENSGT01090000260018.C.a	ENSGT01090000259995.b.b.a.b.i
Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000162415 #32	ENSGT00900000143207	ENSGT00940000161967 #30	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b.g.a #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00950000183522	ENSGT00940000163997 #28	ENSGT00940000160177	ENSGT00940000159981.e.a	ENSGT00940000159981.e.b	ENSGT00390000006224	ENSGT01090000260018.C.b.a.a	ENSGT01090000260018.C.a	ENSGT01090000259995.b.b.a.b.i.c.b
Ryukyu mouse	MODERN SPECIES	2	Nlrp3 (MGP_CAROLIEiJ_G0016439) #32	Zkscan17 (MGP_CAROLIEiJ_G0016438) #30	Zfp867 (MGP_CAROLIEiJ_G0016437)	Jmjd4 (MGP_CAROLIEiJ_G0016436) #11	MGP_CAROLIEiJ_G0016435 #12	Prss38 (MGP_CAROLIEiJ_G0016434) #13	Wnt9a (MGP_CAROLIEiJ_G0016433) #14	Wnt3a (MGP_CAROLIEiJ_G0016432) #15	MGP_CAROLIEiJ_G0016431 #16	MGP_CAROLIEiJ_G0016430 #16	2310033P09Rik (MGP_CAROLIEiJ_G0016429) #17	Mrpl55 (MGP_CAROLIEiJ_G0016428) #18	Guk1 (MGP_CAROLIEiJ_G0016427) #19	Gjc2 (MGP_CAROLIEiJ_G0016426) #20	Iba57 (MGP_CAROLIEiJ_G0016425) #21	MGP_CAROLIEiJ_G0016424 #22	Trim11 (MGP_CAROLIEiJ_G0016423) #23	Trim17 (MGP_CAROLIEiJ_G0016421) #24	H2ac25 (MGP_CAROLIEiJ_G0016422) #26	H2bc27 (MGP_CAROLIEiJ_G0016420)	MGP_CAROLIEiJ_G0016419	Btnl10 (MGP_CAROLIEiJ_G0016418) #28	Zfp39 (MGP_CAROLIEiJ_G0016417)	2810021J22Rik (MGP_CAROLIEiJ_G0016416)	Gm12258 (MGP_CAROLIEiJ_G0016415)	Fam183b (MGP_CAROLIEiJ_G0016414)	Or2t44 (MGP_CAROLIEiJ_G0016413)	Or2t45 (MGP_CAROLIEiJ_G0016412)	MGP_CAROLIEiJ_G0016411	MGP_CAROLIEiJ_G0016410	MGP_CAROLIEiJ_G0016409
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000162415 #32	ENSGT00900000143207	ENSGT00940000161967 #30	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b.g.a #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00950000183522	ENSGT00940000163997 #28	ENSGT00940000160177	ENSGT00940000159981.e.a	ENSGT00940000159981.e.b	ENSGT01060000248581.C.a.b.a.a.l	ENSGT00390000006224	ENSGT01090000260018.C.b.a.a	ENSGT01090000260018.C.a
Mouse	MODERN SPECIES	2	Or2b11 (ENSMUSG00000059610) #33	Nlrp3 (ENSMUSG00000032691) #32	Zkscan17 (ENSMUSG00000020472) #30	Zfp867 (ENSMUSG00000054519)	Jmjd4 (ENSMUSG00000036819) #11	Snap47 (ENSMUSG00000009894) #12	Prss38 (ENSMUSG00000049291) #13	Wnt9a (ENSMUSG00000000126) #14	Wnt3a (ENSMUSG00000009900) #15	Arf1 (ENSMUSG00000048076) #16	2310033P09Rik (ENSMUSG00000020441) #17	Mrpl55 (ENSMUSG00000036860) #18	Guk1 (ENSMUSG00000020444) #19	Gjc2 (ENSMUSG00000043448) #20	Iba57 (ENSMUSG00000049287) #21	Obscn (ENSMUSG00000061462) #22	Trim11 (ENSMUSG00000020455) #23	H3f4 (ENSMUSG00000080152) #25	Trim17 (ENSMUSG00000036964) #24	H2ac25 (ENSMUSG00000078851) #26	H2bc26-ps (ENSMUSG00000080712)	H2bc27 (ENSMUSG00000056895)	Rnf187 (ENSMUSG00000020496)	Btnl10 (ENSMUSG00000020490) #28	Zfp39 (ENSMUSG00000037001)	2810021J22Rik (ENSMUSG00000020491)	Gm12258 (ENSMUSG00000072915)	Or9e1 (ENSMUSG00000094805)	Or5af1 (ENSMUSG00000096806)	Or5af2 (ENSMUSG00000070438)	Fam183b (ENSMUSG00000049154)
Mus_C	ANCESTRAL SPECIES	3	ENSGT00940000162415 #32	ENSGT00900000143207	ENSGT00940000161967 #30	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b.g.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00950000183522	ENSGT00940000163997 #28	ENSGT00940000160177	ENSGT00940000159981.e.a	ENSGT00940000159981.e.b	ENSGT01060000248581.C.a.b.a.a.l	ENSGT00390000006224	ENSGT01090000260018.C.b.a.a	ENSGT01090000260018.C.a
Steppe mouse	MODERN SPECIES	3105	Zkscan17 (ENSMSIG00000020997) #30	ENSMSIG00000021018	Zfp867 (ENSMSIG00000021023)	Jmjd4 (ENSMSIG00000021041) #11	Snap47 (ENSMSIG00000021067) #12	Prss38 (ENSMSIG00000021101) #13	Wnt9a (ENSMSIG00000021113) #14	Wnt3a (ENSMSIG00000021119) #15	ENSMSIG00000021128 #16	2310033P09Rik (ENSMSIG00000021149) #17	Mrpl55 (ENSMSIG00000021173) #18	Guk1 (ENSMSIG00000021189) #19	Gjc2 (ENSMSIG00000021219) #20	Iba57 (ENSMSIG00000021231) #21	ENSMSIG00000021247	Obscn (ENSMSIG00000021262) #22	ENSMSIG00000021680	Trim11 (ENSMSIG00000021692) #23	Trim17 (ENSMSIG00000021747) #24	H3f4 (ENSMSIG00000021760) #25	H2ac25 (ENSMSIG00000021773) #26	H2bc26-ps (ENSMSIG00000021777)	H2bc27 (ENSMSIG00000021813)	ENSMSIG00000021818	Btnl10 (ENSMSIG00000021827) #28	Zfp39 (ENSMSIG00000021841)	2810021J22Rik (ENSMSIG00000021856)	Gm12258 (ENSMSIG00000021863)	Or5af2 (ENSMSIG00000021882)	ENSMSIG00000021888	Or2t44 (ENSMSIG00000021908)
spretus	MODERN SPECIES	2	MGP_SPRETEiJ_G0017276 ##33	Or2b11 (MGP_SPRETEiJ_G0017275) #33	Nlrp3 (MGP_SPRETEiJ_G0017274) #32	Zkscan17 (MGP_SPRETEiJ_G0017273) #30	Zfp867 (MGP_SPRETEiJ_G0017272)	Jmjd4 (MGP_SPRETEiJ_G0017271) #11	Snap47 (MGP_SPRETEiJ_G0017270) #12	Prss38 (MGP_SPRETEiJ_G0017269) #13	Wnt9a (MGP_SPRETEiJ_G0017268) #14	Wnt3a (MGP_SPRETEiJ_G0017267) #15	2310033P09Rik (MGP_SPRETEiJ_G0017266) #17	Mrpl55 (MGP_SPRETEiJ_G0017265) #18	Guk1 (MGP_SPRETEiJ_G0017264) #19	Gjc2 (MGP_SPRETEiJ_G0017263) #20	Iba57 (MGP_SPRETEiJ_G0017262) #21	Obscn (MGP_SPRETEiJ_G0017261) #22	Trim11 (MGP_SPRETEiJ_G0017260) #23	Trim17 (MGP_SPRETEiJ_G0017259) #24	H2ac25 (MGP_SPRETEiJ_G0017258) #26	H2bc27 (MGP_SPRETEiJ_G0017257)	MGP_SPRETEiJ_G0017256	Btnl10 (MGP_SPRETEiJ_G0017255) #28	Zfp39 (MGP_SPRETEiJ_G0017254)	2810021J22Rik (MGP_SPRETEiJ_G0017253)	Gm12258 (MGP_SPRETEiJ_G0017252)	Fam183b (MGP_SPRETEiJ_G0017251)	Or2t44 (MGP_SPRETEiJ_G0017250)	Or2t45 (MGP_SPRETEiJ_G0017249)	MGP_SPRETEiJ_G0017248 ##35	MGP_SPRETEiJ_G0017247 ##35	Or11l3 (MGP_SPRETEiJ_G0017246)
Shrew mouse	MODERN SPECIES	5	Or2b11 (MGP_PahariEiJ_G0017570) #33	MGP_PahariEiJ_G0017569 #32	Zkscan17 (MGP_PahariEiJ_G0017568) #30	Zfp867 (MGP_PahariEiJ_G0017567)	Jmjd4 (MGP_PahariEiJ_G0017566) #11	MGP_PahariEiJ_G0017565 #12	Prss38 (MGP_PahariEiJ_G0017564) #13	Wnt9a (MGP_PahariEiJ_G0017563) #14	Wnt3a (MGP_PahariEiJ_G0017562) #15	Arf1 (MGP_PahariEiJ_G0017561) #16	2310033P09Rik (MGP_PahariEiJ_G0017560) #17	Mrpl55 (MGP_PahariEiJ_G0017559) #18	Guk1 (MGP_PahariEiJ_G0017558) #19	Gjc2 (MGP_PahariEiJ_G0017557) #20	Iba57 (MGP_PahariEiJ_G0017556) #21	Obscn (MGP_PahariEiJ_G0017555) #22	Trim11 (MGP_PahariEiJ_G0017554) #23	Trim17 (MGP_PahariEiJ_G0017553) #24	H2ac25 (MGP_PahariEiJ_G0017552) #26	H2bc27 (MGP_PahariEiJ_G0017551)	MGP_PahariEiJ_G0017550	Btnl10 (MGP_PahariEiJ_G0017549) #28	Zfp39 (MGP_PahariEiJ_G0017548)	2810021J22Rik (MGP_PahariEiJ_G0017547)	Gm12258 (MGP_PahariEiJ_G0017546)	Fam183b (MGP_PahariEiJ_G0017545)	Or2t44 (MGP_PahariEiJ_G0017544)	Or2t45 (MGP_PahariEiJ_G0017543)	Trim58 (MGP_PahariEiJ_G0017542)	Or11l3 (MGP_PahariEiJ_G0017541)	MGP_PahariEiJ_G0017540
Rat	MODERN SPECIES	1	Nlrp3 (ENSRNOG00000003170) #32	Zfp496 (ENSRNOG00000003129) #30	Ftl1 (ENSRNOG00000020843)	Zfp867 (ENSRNOG00000022431)	Jmjd4 (ENSRNOG00000022438) #11	Snap47 (ENSRNOG00000022472) #12	Prss38 (ENSRNOG00000022548) #13	Wnt9a (ENSRNOG00000003066) #14	Wnt3a (ENSRNOG00000003039) #15	Arf1 (ENSRNOG00000060229) #16	C10h1orf35 (ENSRNOG00000002944) #17	Mrpl55 (ENSRNOG00000002943) #18	Guk1 (ENSRNOG00000002928) #19	Gjc2 (ENSRNOG00000038328) #20	Iba57 (ENSRNOG00000068756) #21	Obscn (ENSRNOG00000058068) #22	Trim11 (ENSRNOG00000002915) #23	H2ac25 (ENSRNOG00000022983) #24	H2ac25 (ENSRNOG00000064520) #26	H2bu1 (ENSRNOG00000066919)	Hist3h2ba (ENSRNOG00000043419)	Rnf187 (ENSRNOG00000049219)	Btnl10 (ENSRNOG00000043019) #28	Zfp39 (ENSRNOG00000014712)	LOC102555635 (ENSRNOG00000023431)	RGD1561277 (ENSRNOG00000051868)	Or9e1b (ENSRNOG00000062948)	Or5af1c (ENSRNOG00000069086)	Or5af1 (ENSRNOG00000069128)	Or5af1b (ENSRNOG00000065010)	Cfap144 (ENSRNOG00000002873)
Cricetidae	ANCESTRAL SPECIES		ENSGT00940000162415 #32	ENSGT00900000143207	ENSGT00940000161967 #30	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000163997 #28	ENSGT00940000160177	ENSGT00940000159981.e.a	ENSGT00940000159981.e.b	ENSGT01060000248581.C.a.b.a.a	ENSGT00390000006224	ENSGT01090000260018.C.b.a.a	ENSGT01090000260018.C.a
Cricetinae	ANCESTRAL SPECIES		ENSGT00940000162415 #32	ENSGT00900000143207	ENSGT00940000161967 #30	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000163997 #28	ENSGT00940000160177	ENSGT00940000159981.e.a	ENSGT00940000159981.e.b	ENSGT01060000248581.C.a.b.a.a	ENSGT00390000006224	ENSGT01090000260018.C.b.a.a	ENSGT01090000260018.C.a
Golden Hamster	MODERN SPECIES	627	Nlrp3 (ENSMAUG00000020051) #32	ENSMAUG00000006329	ENSMAUG00000017910	Zkscan17 (ENSMAUG00000016630) #30	ENSMAUG00000019046	Jmjd4 (ENSMAUG00000017265) #11	Snap47 (ENSMAUG00000020014) #12	Prss38 (ENSMAUG00000019978) #13	Wnt9a (ENSMAUG00000021643) #14	Wnt3a (ENSMAUG00000021475) #15	ENSMAUG00000022253 #16	2310033P09Rik (ENSMAUG00000019958) #17	Guk1 (ENSMAUG00000022283) #19	Gjc2 (ENSMAUG00000020150) #20	Iba57 (ENSMAUG00000020575) #21	Obscn (ENSMAUG00000022279) #22	Trim11 (ENSMAUG00000001510) #23	Trim17 (ENSMAUG00000004817) #24	H3f4 (ENSMAUG00000010700) #25	ENSMAUG00000010470	H2ac25 (ENSMAUG00000010628) #26	H2bc26-ps (ENSMAUG00000010794)	H2bc27 (ENSMAUG00000010540)	ENSMAUG00000021471 #27	ENSMAUG00000020727	Btnl10 (ENSMAUG00000021399) #28	Zfp39 (ENSMAUG00000001536)	ENSMAUG00000002461	ENSMAUG00000002837	Fam183b (ENSMAUG00000021857)	ENSMAUG00000010641
Chinese hamster chok1gshd	MODERN SPECIES	229	Nlrp3 (ENSCGRG00001021138) #32	ENSCGRG00001021260	Zkscan17 (ENSCGRG00001020767) #30	Zfp867 (ENSCGRG00001016010)	Jmjd4 (ENSCGRG00001013252) #11	Snap47 (ENSCGRG00001004500) #12	Prss38 (ENSCGRG00001019522) #13	Wnt9a (ENSCGRG00001016816) #14	Wnt3a (ENSCGRG00001015217) #15	Arf1 (ENSCGRG00001013922) #16	2310033P09Rik (ENSCGRG00001021154) #17	Mrpl55 (ENSCGRG00001020506) #18	ENSCGRG00001016847 #19	Gjc2 (ENSCGRG00001008796) #20	Iba57 (ENSCGRG00001007484) #21	Obscn (ENSCGRG00001023809) #22	Trim11 (ENSCGRG00001016227) #23	Trim17 (ENSCGRG00001017038) #24	ENSCGRG00001009610 #25	H2bc27 (ENSCGRG00001005703)	H2bc26-ps (ENSCGRG00001013795)	H2ac25 (ENSCGRG00001008750) #26	ENSCGRG00001017170 #27	ENSCGRG00001015992	Zfp39 (ENSCGRG00001002406)	2810021J22Rik (ENSCGRG00001001041)	ENSCGRG00001012941	ENSCGRG00001007292	ENSCGRG00001008023	Fam183b (ENSCGRG00001024113)	Or2t44 (ENSCGRG00001022873)
Cricetidae_B	ANCESTRAL SPECIES		ENSGT01090000260044.A.b.a.a.a.b #33	ENSGT00940000162415 #32	ENSGT00940000161967 #30	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #24	ENSGT01100000263514.A.e.b #25	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510 #27	ENSGT00940000163997 #28	ENSGT00940000160177	ENSGT00940000159981.e.a	ENSGT00940000159981.e.b	ENSGT01060000248581.C.a.b.a.a	ENSGT00390000006224	ENSGT01090000260018.C.b.a.a	ENSGT01090000260018.C.a
Northern American deer mouse	MODERN SPECIES	21	Nlrp3 (ENSPEMG00000018349) #32	Zkscan17 (ENSPEMG00000028678) #30	Zfp867 (ENSPEMG00000015201)	Jmjd4 (ENSPEMG00000025158) #11	Snap47 (ENSPEMG00000003186) #12	Prss38 (ENSPEMG00000000315) #13	ENSPEMG00000026476	Wnt9a (ENSPEMG00000008917) #14	Wnt3a (ENSPEMG00000014970) #15	Arf1 (ENSPEMG00000024884) #16	2310033P09Rik (ENSPEMG00000016726) #17	Mrpl55 (ENSPEMG00000010381) #18	Guk1 (ENSPEMG00000007733) #19	Gjc2 (ENSPEMG00000015748) #20	Iba57 (ENSPEMG00000029448) #21	Obscn (ENSPEMG00000017360) #22	Trim11 (ENSPEMG00000013300) #23	Trim17 (ENSPEMG00000012957) #24	H3f4 (ENSPEMG00000028465) #25	H2ac25 (ENSPEMG00000025825) #26	H2bc26-ps (ENSPEMG00000029564)	H2bc27 (ENSPEMG00000029370)	ENSPEMG00000024885 #27	Btnl10 (ENSPEMG00000010544) #28	Zfp39 (ENSPEMG00000009428)	2810021J22Rik (ENSPEMG00000028205)	Gm12258 (ENSPEMG00000029020)	ENSPEMG00000027643	ENSPEMG00000025827	Fam183b (ENSPEMG00000020878)	Or2t44 (ENSPEMG00000022635)
Prairie vole	MODERN SPECIES	15	ENSMOCG00000004021	ENSMOCG00000007500	Zkscan17 (ENSMOCG00000021773) #30	Zfp867 (ENSMOCG00000017475)	Jmjd4 (ENSMOCG00000019517) #11	Snap47 (ENSMOCG00000021698) #12	Prss38 (ENSMOCG00000020492) #13	Wnt9a (ENSMOCG00000022972) #14	Wnt3a (ENSMOCG00000022805) #15	Arf1 (ENSMOCG00000005344) #16	2310033P09Rik (ENSMOCG00000020633) #17	Mrpl55 (ENSMOCG00000022355) #18	Guk1 (ENSMOCG00000020868) #19	Gjc2 (ENSMOCG00000015445) #20	Iba57 (ENSMOCG00000019048) #21	Obscn (ENSMOCG00000009245) #22	Trim11 (ENSMOCG00000021941) #23	Trim17 (ENSMOCG00000016644) #24	H3f4 (ENSMOCG00000002973) #25	H2ac25 (ENSMOCG00000002942) #26	H2bc26-ps (ENSMOCG00000003080)	H2bc27 (ENSMOCG00000002061)	Rnf187 (ENSMOCG00000021645)	Btnl10 (ENSMOCG00000005486) #28	Zfp39 (ENSMOCG00000017961)	ENSMOCG00000003250	ENSMOCG00000006893	Fam183b (ENSMOCG00000013813)	ENSMOCG00000011805	ENSMOCG00000002169 ##35	Trim58 (ENSMOCG00000019086)
Tree shrew	DUPLICATION
Tree shrew	DUPLICATION
Tree shrew	MODERN SPECIES	3043																ENSTBEG00000011028 #22	ENSTBEG00000011545	ENSTBEG00000011639 #22
Tree shrew	MODERN SPECIES	3043														ENSTBEG00000011028 #22	ENSTBEG00000011545	ENSTBEG00000011639 #22
Tree shrew	MODERN SPECIES	9772																ENSTBEG00000003110 #22
Atlantogenata	ANCESTRAL SPECIES	148				ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000155138.f	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00390000016274
Afrotheria	ANCESTRAL SPECIES	186				ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000155138.f	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00390000016274
Tenrec	MODERN SPECIES	4743																ENSETEG00000006375 #22
Afrotheria_a	ANCESTRAL SPECIES	187				ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000155138.f	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00390000016274
Elephant	MODERN SPECIES	27	H3-4 (ENSLAFG00000031137) #25	TRIM11 (ENSLAFG00000017039) #23	ENSLAFG00000032186 #24	JMJD4 (ENSLAFG00000022162) #11	SNAP47 (ENSLAFG00000028954) #12	PRSS38 (ENSLAFG00000005934) #13	ENSLAFG00000031393	WNT9A (ENSLAFG00000017352) #14	ENSLAFG00000031881 #15	ARF1 (ENSLAFG00000006987) #16	C1orf35 (ENSLAFG00000003007) #17	MRPL55 (ENSLAFG00000003008) #18	GUK1 (ENSLAFG00000026666) #19	GJC2 (ENSLAFG00000010220) #20	IBA57 (ENSLAFG00000010222) #21	ENSLAFG00000022315 #22	ENSLAFG00000030495	PRMT2 (ENSLAFG00000009604)	S100B (ENSLAFG00000014935)
Hyrax	MODERN SPECIES	4537																OBSCN (ENSPCAG00000005964) #22	ENSPCAG00000006677
Xenarthra	ANCESTRAL SPECIES	596									ENSGT00940000155138.f	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00390000006465 #21	ENSGT00940000154756.A #22
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	904																ENSDNOG00000044665 #22	ENSDNOG00000040332 #29	ENSDNOG00000049210 #24	TRIM11 (ENSDNOG00000046467) #23	TRIM17 (ENSDNOG00000001170) #24	H3-4 (ENSDNOG00000047581) #25	ENSDNOG00000041071 #26	H2BC26 (ENSDNOG00000043947)	ENSDNOG00000044676	ENSDNOG00000012828 #27	ENSDNOG00000044824 #26	ENSDNOG00000045637 #28	NABP1 (ENSDNOG00000023585)
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	2365						ENSDNOG00000039640	ENSDNOG00000049106	ENSDNOG00000047752	WNT9A (ENSDNOG00000007791) #14	WNT3A (ENSDNOG00000037172) #15	ENSDNOG00000049038 #16	C1orf35 (ENSDNOG00000040335) #17	MRPL55 (ENSDNOG00000024342) #18	ENSDNOG00000023608 #21	ENSDNOG00000040893 #22	ENSDNOG00000035986 #22
Armadillo	MODERN SPECIES	2365							ENSDNOG00000039640	ENSDNOG00000049106	ENSDNOG00000047752	WNT9A (ENSDNOG00000007791) #14	WNT3A (ENSDNOG00000037172) #15	ENSDNOG00000049038 #16	C1orf35 (ENSDNOG00000040335) #17	MRPL55 (ENSDNOG00000024342) #18	ENSDNOG00000023608 #21	ENSDNOG00000040893 #22	ENSDNOG00000035986 #22
Armadillo	MODERN SPECIES	2121																ENSDNOG00000037026 #22
Marsupialia	ANCESTRAL SPECIES	13	ENSGT00940000160534	ENSGT00400000022305	ENSGT00940000160773	ENSGT00390000014069.b	ENSGT00940000158253	ENSGT00940000161141	ENSGT00940000157423	ENSGT00940000158922	ENSGT00940000156382	ENSGT00470000042293.a.b	ENSGT00950000183184.b	ENSGT00940000160724	ENSGT00940000159523	ENSGT00940000161812	ENSGT00390000003267	ENSGT00940000154756.A #22	ENSGT00940000154756.B ##22	ENSGT00940000166913	ENSGT00390000015009	ENSGT00530000063909.a	ENSGT00940000159790	ENSGT01090000260005.a.a.a.b.a.a.b ##20	ENSGT00940000161778	ENSGT00940000155685	ENSGT00390000004038	ENSGT00530000063991.a	ENSGT00940000159539	ENSGT00940000161200	ENSGT00940000162478	ENSGT00550000075038	ENSGT00390000017837.a
Opossum	MODERN SPECIES	5	ENSMODG00000013871	ALS2CL (ENSMODG00000013867)	JMJD4 (ENSMODG00000013850) #11	SNAP47 (ENSMODG00000013844) #12	ENSMODG00000027354	ENSMODG00000013841 #13	ENSMODG00000022963	WNT9A (ENSMODG00000013820) #14	WNT3A (ENSMODG00000013810) #15	ENSMODG00000013804	MRPL55 (ENSMODG00000013793) #18	ENSMODG00000013790 #19	GJC2 (ENSMODG00000013779) #20	IBA57 (ENSMODG00000051147) #21	ENSMODG00000027446	OBSCN (ENSMODG00000013764) #22	ENSMODG00000028809	ENSMODG00000041391	ENSMODG00000013724	ENSMODG00000013677	ENSMODG00000013671	ENSMODG00000027869	ENSMODG00000038496	ENSMODG00000013644	ENSMODG00000028520	ACKR2 (ENSMODG00000013607)	CCDC13 (ENSMODG00000013599)	HHATL (ENSMODG00000013592)	KLHL40 (ENSMODG00000013585)	ZBTB47 (ENSMODG00000013582)	NKTR (ENSMODG00000013574)
Marsupialia_b	ANCESTRAL SPECIES	16	ENSGT00940000160534	ENSGT00400000022305	ENSGT00940000160773	ENSGT00390000014069.b	ENSGT00940000158253	ENSGT00940000161141	ENSGT00940000157423	ENSGT00940000158922	ENSGT00940000156382	ENSGT00470000042293.a.b	ENSGT00950000183184.b	ENSGT00940000160724	ENSGT00940000159523	ENSGT00940000161812	ENSGT00390000003267	ENSGT00940000154756.A #22	ENSGT00940000154756.B ##22	ENSGT00940000166913	ENSGT00390000015009	ENSGT00530000063909.a	ENSGT00940000159790	ENSGT01090000260005.a.a.a.b.a.a.b ##20	ENSGT00940000161778	ENSGT00940000155685	ENSGT00390000004038	ENSGT00530000063991.a	ENSGT00940000159539	ENSGT00940000161200	ENSGT00940000162478	ENSGT00550000075038	ENSGT00390000017837.a
Diprotodontia	ANCESTRAL SPECIES	9	ENSGT00940000160534	ENSGT00400000022305	ENSGT00940000160773	ENSGT00390000014069.b	ENSGT00940000158253	ENSGT00940000161141	ENSGT00940000157423	ENSGT00940000158922	ENSGT00940000156382	ENSGT00470000042293.a.b	ENSGT00950000183184.b	ENSGT00940000160724	ENSGT00940000159523	ENSGT00940000161812	ENSGT00390000003267	ENSGT00940000154756.A #22	ENSGT00940000154756.B ##22	ENSGT00940000166913	ENSGT00390000015009	ENSGT00530000063909.a	ENSGT00940000159790	ENSGT01090000260005.a.a.a.b.a.a.b ##20	ENSGT00940000161778	ENSGT00940000155685	ENSGT00390000004038	ENSGT00530000063991.a	ENSGT00940000159539	ENSGT00940000161200	ENSGT00940000162478	ENSGT00550000075038	ENSGT00390000017837.a
Wallaby	MODERN SPECIES	6704																OBSCN (ENSMEUG00000007256) #22	ENSMEUG00000007434
Diprotodontia_a	ANCESTRAL SPECIES	11	ENSGT00940000160534	ENSGT00400000022305	ENSGT00940000160773	ENSGT00390000014069.b	ENSGT00940000158253	ENSGT00940000161141	ENSGT00940000157423	ENSGT00940000158922	ENSGT00940000156382	ENSGT00470000042293.a.b	ENSGT00950000183184.b	ENSGT00940000160724	ENSGT00940000159523	ENSGT00940000161812	ENSGT00390000003267	ENSGT00940000154756.A #22	ENSGT00940000154756.B ##22	ENSGT00940000166913	ENSGT00390000015009	ENSGT00530000063909.a	ENSGT00940000159790	ENSGT01090000260005.a.a.a.b.a.a.b ##20	ENSGT00940000161778	ENSGT00940000155685	ENSGT00390000004038	ENSGT00530000063991.a	ENSGT00940000159539	ENSGT00940000161200	ENSGT00940000162478	ENSGT00550000075038	ENSGT00390000017837.a
koala	MODERN SPECIES	75	JMJD4 (ENSPCIG00000025913) #11	SNAP47 (ENSPCIG00000025912) #12	ENSPCIG00000001277	ENSPCIG00000001298	ENSPCIG00000031488 #13	ENSPCIG00000027274	WNT9A (ENSPCIG00000030182) #14	WNT3A (ENSPCIG00000021855) #15	ARF1 (ENSPCIG00000021851) #16	C1orf35 (ENSPCIG00000021849) #17	ENSPCIG00000021848	ENSPCIG00000021846 #19	GJC2 (ENSPCIG00000021844) #20	ENSPCIG00000021842 #21	ENSPCIG00000021839	OBSCN (ENSPCIG00000021795) #22	ENSPCIG00000021838	ENSPCIG00000015990	ENSPCIG00000017091	ENSPCIG00000015992	ENSPCIG00000031791	ENSPCIG00000001531	ENSPCIG00000017089	ENSPCIG00000017087	ENSPCIG00000017084	ENSPCIG00000017083	ENSPCIG00000031674	ACKR2 (ENSPCIG00000017081)	ENSPCIG00000017079	CCDC13 (ENSPCIG00000017073)	HHATL (ENSPCIG00000017067)
Common wonbat	DUPLICATION
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1091	ALS2CL (ENSVURG00010011135)	JMJD4 (ENSVURG00010011120) #11	SNAP47 (ENSVURG00010011117) #12	ENSVURG00010011097	ENSVURG00010011084 #13	ENSVURG00010011076	WNT9A (ENSVURG00010011070) #14	WNT3A (ENSVURG00010011060) #15	ARF1 (ENSVURG00010011047) #16	C1orf35 (ENSVURG00010011035) #17	ENSVURG00010011028 #18	GUK1 (ENSVURG00010011021) #19	ENSVURG00010011010 #20	ENSVURG00010011004 #21	ENSVURG00010010994	ENSVURG00010010975 #22
Common wonbat	MODERN SPECIES	1056	ENSVURG00010013621	NINJ1 (ENSVURG00010013614)	WNK2 (ENSVURG00010013564)	FAM120A (ENSVURG00010013533)	PHF2 (ENSVURG00010013498)	BARX1 (ENSVURG00010013478)	PTPDC1 (ENSVURG00010013465)	ENSVURG00010013425	WNT7A (ENSVURG00010013416)	FBLN2 (ENSVURG00010013331)	HDAC11 (ENSVURG00010013309)	NUP210 (ENSVURG00010013289)	ENSVURG00010013253	ENSVURG00010013211	ENSVURG00010013197	ENSVURG00010013190 #22
Common wonbat	MODERN SPECIES	1056															ENSVURG00010001383	ENSVURG00010001359 #22	ENSVURG00010001333 ##22	ENSVURG00010001285	ENSVURG00010001274	ENSVURG00010001263	ENSVURG00010001241	ENSVURG00010001219	ENSVURG00010001200	ENSVURG00010001187	ENSVURG00010001146	ENSVURG00010001134	ENSVURG00010001131	ENSVURG00010001124	ENSVURG00010001114	ENSVURG00010001100	ACKR2 (ENSVURG00010001092)
Tasmanian devil	MODERN SPECIES		ENSSHAG00000008746	JMJD4 (ENSSHAG00000009023) #11	SNAP47 (ENSSHAG00000009204) #12	ENSSHAG00000029686	ENSSHAG00000023996 #13	ENSSHAG00000023350	WNT9A (ENSSHAG00000012600) #14	WNT3A (ENSSHAG00000023523) #15	ENSSHAG00000021122 #16	C1orf35 (ENSSHAG00000014645) #17	MRPL55 (ENSSHAG00000027608) #18	GUK1 (ENSSHAG00000014798) #19	GJC2 (ENSSHAG00000022939) #20	IBA57 (ENSSHAG00000026953) #21	ENSSHAG00000015166	ENSSHAG00000027621 #22	ENSSHAG00000001725	ENSSHAG00000001927	ENSSHAG00000031960	ENSSHAG00000005659	ENSSHAG00000001445	ENSSHAG00000006552	ENSSHAG00000007146	ENSSHAG00000022645	ENSSHAG00000024915	ENSSHAG00000022961	ENSSHAG00000030270	ENSSHAG00000021704	ENSSHAG00000005111	CCDC13 (ENSSHAG00000020658)	KLHL40 (ENSSHAG00000007480)
Platypus	MODERN SPECIES	4	ENSOANG00000004262	ENSOANG00000050324	CCDC12 (ENSOANG00000044446)	PTH1R (ENSOANG00000039996)	MYL3 (ENSOANG00000005484)	ENSOANG00000046262	ENSOANG00000037642	ENSOANG00000042376 #11	WNT9A (ENSOANG00000046921) #14	ARF1 (ENSOANG00000048039) #16	ENSOANG00000038636 #17	ENSOANG00000046224	GUK1 (ENSOANG00000036937) #19	IBA57 (ENSOANG00000049649) #21	ENSOANG00000047271	ENSOANG00000042737 #22	ENSOANG00000050228	ENSOANG00000050342	HIGD1A (ENSOANG00000038143)	HHATL (ENSOANG00000004353)	KLHL40 (ENSOANG00000037937)	ZBTB47 (ENSOANG00000010793)	ENSOANG00000008946	ENSOANG00000048058	ENSOANG00000040878	SEC22C (ENSOANG00000036395)	ENSOANG00000020679	AQP1 (ENSOANG00000036888)	ENSOANG00000043586	ADCYAP1R1 (ENSOANG00000006558)	INMT (ENSOANG00000047781)