Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000162415	ENSGT00900000143207	ENSGT00940000161967 #7	ENSGT00950000182755.b.a.a.a.a.b #9	ENSGT00940000159380 #10	ENSGT00950000182843.b #11	ENSGT00940000154494.a #12	ENSGT00940000159618 #13	ENSGT00940000160510 #14	ENSGT00950000183080.a.b.a.b.b.g.a ##15	ENSGT00390000005590 #16	ENSGT00390000010309 #17	ENSGT00940000155815 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00390000006465 #20	ENSGT00940000154756.A #22	ENSGT00940000160371 #24	ENSGT00940000162155 #25	ENSGT01100000263514.A.e.b #26	ENSGT00940000153092.a.a.c.b #27	ENSGT01100000263474.a.b.b.e.b.a.a #28	ENSGT01100000263474.a.b.b.e.b.a.b #29	ENSGT00950000183522 #30	ENSGT00940000163997 #31	ENSGT00940000160177 #32	ENSGT00940000159981.e.a #33	ENSGT00940000159981.e.b #34	ENSGT00390000006224 #36	ENSGT01090000260018.C.b.a.a #37	ENSGT01090000260018.C.a ##37	ENSGT01090000259995.b.b.a.b.i.c.b
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000162415	ENSGT00900000143207	ENSGT00940000161967 #7	ENSGT00950000182755.b.a.a.a.a.b #9	ENSGT00940000159380 #10	ENSGT00950000182843.b #11	ENSGT00940000154494.a #12	ENSGT00940000159618 #13	ENSGT00940000160510 #14	ENSGT00950000183080.a.b.a.b.b.g.a ##15	ENSGT00390000005590 #16	ENSGT00390000010309 #17	ENSGT00940000155815 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00390000006465 #20	ENSGT00940000154756.A #22	ENSGT00940000160371 #24	ENSGT00940000162155 #25	ENSGT01100000263514.A.e.b #26	ENSGT00940000153092.a.a.c.b #27	ENSGT01100000263474.a.b.b.e.b.a.a #28	ENSGT01100000263474.a.b.b.e.b.a.b #29	ENSGT00950000183522 #30	ENSGT00940000163997 #31	ENSGT00940000160177 #32	ENSGT00940000159981.e.a #33	ENSGT00940000159981.e.b #34	ENSGT01060000248581.C.a.b.a.a.l #35	ENSGT00390000006224 #36	ENSGT01090000260018.C.b.a.a #37	ENSGT01090000260018.C.a ##37
Mus_C	ANCESTRAL SPECIES	3	ENSGT00940000162415	ENSGT00900000143207	ENSGT00940000161967 #7	ENSGT00950000182755.b.a.a.a.a.b #9	ENSGT00940000159380 #10	ENSGT00950000182843.b #11	ENSGT00940000154494.a #12	ENSGT00940000159618 #13	ENSGT00940000160510 #14	ENSGT00950000183080.a.b.a.b.b.g.b #15	ENSGT00390000005590 #16	ENSGT00390000010309 #17	ENSGT00940000155815 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00390000006465 #20	ENSGT00940000154756.A #22	ENSGT00940000160371 #24	ENSGT00940000162155 #25	ENSGT01100000263514.A.e.b #26	ENSGT00940000153092.a.a.c.b #27	ENSGT01100000263474.a.b.b.e.b.a.a #28	ENSGT01100000263474.a.b.b.e.b.a.b #29	ENSGT00950000183522 #30	ENSGT00940000163997 #31	ENSGT00940000160177 #32	ENSGT00940000159981.e.a #33	ENSGT00940000159981.e.b #34	ENSGT01060000248581.C.a.b.a.a.l #35	ENSGT00390000006224 #36	ENSGT01090000260018.C.b.a.a #37	ENSGT01090000260018.C.a ##37
Steppe mouse	MODERN SPECIES	3105	Zkscan17 (ENSMSIG00000020997) #7	ENSMSIG00000021018 #8	Zfp867 (ENSMSIG00000021023) #9	Jmjd4 (ENSMSIG00000021041) #10	Snap47 (ENSMSIG00000021067) #11	Prss38 (ENSMSIG00000021101) #12	Wnt9a (ENSMSIG00000021113) #13	Wnt3a (ENSMSIG00000021119) #14	ENSMSIG00000021128 #15	2310033P09Rik (ENSMSIG00000021149) #16	Mrpl55 (ENSMSIG00000021173) #17	Guk1 (ENSMSIG00000021189) #18	Gjc2 (ENSMSIG00000021219) #19	Iba57 (ENSMSIG00000021231) #20	ENSMSIG00000021247 #21	Obscn (ENSMSIG00000021262) #22	ENSMSIG00000021680 #23	Trim11 (ENSMSIG00000021692) #24	Trim17 (ENSMSIG00000021747) #25	H3f4 (ENSMSIG00000021760) #26	H2ac25 (ENSMSIG00000021773) #27	H2bc26-ps (ENSMSIG00000021777) #28	H2bc27 (ENSMSIG00000021813) #29	ENSMSIG00000021818 #30	Btnl10 (ENSMSIG00000021827) #31	Zfp39 (ENSMSIG00000021841) #32	2810021J22Rik (ENSMSIG00000021856) #33	Gm12258 (ENSMSIG00000021863) #34	Or5af2 (ENSMSIG00000021882) #35	ENSMSIG00000021888 #36	Or2t44 (ENSMSIG00000021908) #37
spretus	MODERN SPECIES	2	MGP_SPRETEiJ_G0017276	Or2b11 (MGP_SPRETEiJ_G0017275)	Nlrp3 (MGP_SPRETEiJ_G0017274)	Zkscan17 (MGP_SPRETEiJ_G0017273) #7	Zfp867 (MGP_SPRETEiJ_G0017272) #9	Jmjd4 (MGP_SPRETEiJ_G0017271) #10	Snap47 (MGP_SPRETEiJ_G0017270) #11	Prss38 (MGP_SPRETEiJ_G0017269) #12	Wnt9a (MGP_SPRETEiJ_G0017268) #13	Wnt3a (MGP_SPRETEiJ_G0017267) #14	2310033P09Rik (MGP_SPRETEiJ_G0017266) #16	Mrpl55 (MGP_SPRETEiJ_G0017265) #17	Guk1 (MGP_SPRETEiJ_G0017264) #18	Gjc2 (MGP_SPRETEiJ_G0017263) #19	Iba57 (MGP_SPRETEiJ_G0017262) #20	Obscn (MGP_SPRETEiJ_G0017261) #22	Trim11 (MGP_SPRETEiJ_G0017260) #24	Trim17 (MGP_SPRETEiJ_G0017259) #25	H2ac25 (MGP_SPRETEiJ_G0017258) #27	H2bc27 (MGP_SPRETEiJ_G0017257) #29	MGP_SPRETEiJ_G0017256 #30	Btnl10 (MGP_SPRETEiJ_G0017255) #31	Zfp39 (MGP_SPRETEiJ_G0017254) #32	2810021J22Rik (MGP_SPRETEiJ_G0017253) #33	Gm12258 (MGP_SPRETEiJ_G0017252) #34	Fam183b (MGP_SPRETEiJ_G0017251) #36	Or2t44 (MGP_SPRETEiJ_G0017250) #37	Or2t45 (MGP_SPRETEiJ_G0017249) ##37	MGP_SPRETEiJ_G0017248	MGP_SPRETEiJ_G0017247	Or11l3 (MGP_SPRETEiJ_G0017246)
Mouse	MODERN SPECIES	2	Or2b11 (ENSMUSG00000059610)	Nlrp3 (ENSMUSG00000032691)	Zkscan17 (ENSMUSG00000020472) #7	Zfp867 (ENSMUSG00000054519) #9	Jmjd4 (ENSMUSG00000036819) #10	Snap47 (ENSMUSG00000009894) #11	Prss38 (ENSMUSG00000049291) #12	Wnt9a (ENSMUSG00000000126) #13	Wnt3a (ENSMUSG00000009900) #14	Arf1 (ENSMUSG00000048076) ##15	2310033P09Rik (ENSMUSG00000020441) #16	Mrpl55 (ENSMUSG00000036860) #17	Guk1 (ENSMUSG00000020444) #18	Gjc2 (ENSMUSG00000043448) #19	Iba57 (ENSMUSG00000049287) #20	Obscn (ENSMUSG00000061462) #22	Trim11 (ENSMUSG00000020455) #24	H3f4 (ENSMUSG00000080152) #26	Trim17 (ENSMUSG00000036964) #25	H2ac25 (ENSMUSG00000078851) #27	H2bc26-ps (ENSMUSG00000080712) #28	H2bc27 (ENSMUSG00000056895) #29	Rnf187 (ENSMUSG00000020496) #30	Btnl10 (ENSMUSG00000020490) #31	Zfp39 (ENSMUSG00000037001) #32	2810021J22Rik (ENSMUSG00000020491) #33	Gm12258 (ENSMUSG00000072915) #34	Or9e1 (ENSMUSG00000094805) ##35	Or5af1 (ENSMUSG00000096806) ##35	Or5af2 (ENSMUSG00000070438) #35	Fam183b (ENSMUSG00000049154) #36
Ryukyu mouse	MODERN SPECIES	2	Nlrp3 (MGP_CAROLIEiJ_G0016439)	Zkscan17 (MGP_CAROLIEiJ_G0016438) #7	Zfp867 (MGP_CAROLIEiJ_G0016437) #9	Jmjd4 (MGP_CAROLIEiJ_G0016436) #10	MGP_CAROLIEiJ_G0016435 #11	Prss38 (MGP_CAROLIEiJ_G0016434) #12	Wnt9a (MGP_CAROLIEiJ_G0016433) #13	Wnt3a (MGP_CAROLIEiJ_G0016432) #14	MGP_CAROLIEiJ_G0016431 ##15	MGP_CAROLIEiJ_G0016430 ##15	2310033P09Rik (MGP_CAROLIEiJ_G0016429) #16	Mrpl55 (MGP_CAROLIEiJ_G0016428) #17	Guk1 (MGP_CAROLIEiJ_G0016427) #18	Gjc2 (MGP_CAROLIEiJ_G0016426) #19	Iba57 (MGP_CAROLIEiJ_G0016425) #20	MGP_CAROLIEiJ_G0016424 #22	Trim11 (MGP_CAROLIEiJ_G0016423) #24	Trim17 (MGP_CAROLIEiJ_G0016421) #25	H2ac25 (MGP_CAROLIEiJ_G0016422) #27	H2bc27 (MGP_CAROLIEiJ_G0016420) #29	MGP_CAROLIEiJ_G0016419 #30	Btnl10 (MGP_CAROLIEiJ_G0016418) #31	Zfp39 (MGP_CAROLIEiJ_G0016417) #32	2810021J22Rik (MGP_CAROLIEiJ_G0016416) #33	Gm12258 (MGP_CAROLIEiJ_G0016415) #34	Fam183b (MGP_CAROLIEiJ_G0016414) #36	Or2t44 (MGP_CAROLIEiJ_G0016413) #37	Or2t45 (MGP_CAROLIEiJ_G0016412) ##37	MGP_CAROLIEiJ_G0016411	MGP_CAROLIEiJ_G0016410	MGP_CAROLIEiJ_G0016409