Rodentia	ANCESTRAL SPECIES	7	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT01090000260044.A.b.a.a.a.b	ENSGT00940000162415	ENSGT00940000161967 #7	ENSGT00940000159380 #10	ENSGT00950000182843.b #11	ENSGT00940000154494.a #12	ENSGT00940000159618 #13	ENSGT00940000160510 #14	ENSGT00950000183080.a.b.a.b.b #15	ENSGT00390000005590 #16	ENSGT00390000010309 #17	ENSGT00940000155815 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00390000006465 #20	ENSGT00940000154756.A #22	ENSGT00940000160371 #24	ENSGT00940000162155 #25	ENSGT01100000263514.A.e.b #26	ENSGT00940000153092.a.a.c.b #27	ENSGT01100000263474.a.b.b.e.b.a.a #28	ENSGT01100000263474.a.b.b.e.b.a.b #29	ENSGT00390000009510	ENSGT00940000163997 #31
Rodentia_B	ANCESTRAL SPECIES	46	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT01090000260044.A.b.a.a.a.b	ENSGT00940000162415	ENSGT00940000161967 #7	ENSGT00940000159380 #10	ENSGT00950000182843.b #11	ENSGT00940000154494.a #12	ENSGT00940000159618 #13	ENSGT00940000160510 #14	ENSGT00950000183080.a.b.a.b.b #15	ENSGT00390000005590 #16	ENSGT00390000010309 #17	ENSGT00940000155815 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00390000006465 #20	ENSGT00940000154756.A #22	ENSGT00940000160371 #24	ENSGT00940000162155 #25	ENSGT01100000263514.A.e.b #26	ENSGT00940000153092.a.a.c.b #27	ENSGT01100000263474.a.b.b.e.b.a.a #28	ENSGT01100000263474.a.b.b.e.b.a.b #29	ENSGT00390000009510	ENSGT00940000163997 #31	ENSGT00940000160177 #32	ENSGT00940000162246	ENSGT01090000260018.A.a.a.b.b ##37	ENSGT01090000259995.a.a.b.a.b.b	ENSGT01090000259995.a.a.a	ENSGT00390000010671	ENSGT00730000111648
Myomorpha	ANCESTRAL SPECIES	28	ENSGT01090000260044.A.b.a.a.a.b	ENSGT00940000162415	ENSGT00940000161967 #7	ENSGT00950000182755.b.a.a.a.a.b #9	ENSGT00940000159380 #10	ENSGT00950000182843.b #11	ENSGT00940000154494.a #12	ENSGT00940000159618 #13	ENSGT00940000160510 #14	ENSGT00950000183080.a.b.a.b.b #15	ENSGT00390000005590 #16	ENSGT00390000010309 #17	ENSGT00940000155815 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00390000006465 #20	ENSGT00940000154756.A #22	ENSGT00940000160371 #24	ENSGT00940000162155 #25	ENSGT01100000263514.A.e.b #26	ENSGT00940000153092.a.a.c.b #27	ENSGT01100000263474.a.b.b.e.b.a.a #28	ENSGT01100000263474.a.b.b.e.b.a.b #29	ENSGT00390000009510	ENSGT00940000163997 #31	ENSGT00940000160177 #32	ENSGT00390000006224 #36	ENSGT01090000260018.C.b.a.a #37	ENSGT01090000260018.C.a ##37	ENSGT01090000259995.b.b.a.b	ENSGT01100000263486.a.b.a.b.b.a.a	ENSGT00940000162246
Muroidea	ANCESTRAL SPECIES	10	ENSGT01090000260044.A.b.a.a.a.b	ENSGT00940000162415	ENSGT00940000161967 #7	ENSGT00950000182755.b.a.a.a.a.b #9	ENSGT00940000159380 #10	ENSGT00950000182843.b #11	ENSGT00940000154494.a #12	ENSGT00940000159618 #13	ENSGT00940000160510 #14	ENSGT00950000183080.a.b.a.b.b #15	ENSGT00390000005590 #16	ENSGT00390000010309 #17	ENSGT00940000155815 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00390000006465 #20	ENSGT00940000154756.A #22	ENSGT00940000160371 #24	ENSGT00940000162155 #25	ENSGT01100000263514.A.e.b #26	ENSGT00940000153092.a.a.c.b #27	ENSGT01100000263474.a.b.b.e.b.a.a #28	ENSGT01100000263474.a.b.b.e.b.a.b #29	ENSGT00390000009510	ENSGT00940000163997 #31	ENSGT00940000160177 #32	ENSGT00390000006224 #36	ENSGT01090000260018.C.b.a.a #37	ENSGT01090000260018.C.a ##37	ENSGT01090000259995.b.b.a.b	ENSGT01100000263486.a.b.a.b.b.a.a	ENSGT00940000162246
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00940000162415	ENSGT00900000143207	ENSGT00940000161967 #7	ENSGT00950000182755.b.a.a.a.a.b #9	ENSGT00940000159380 #10	ENSGT00950000182843.b #11	ENSGT00940000154494.a #12	ENSGT00940000159618 #13	ENSGT00940000160510 #14	ENSGT00950000183080.a.b.a.b.b #15	ENSGT00390000005590 #16	ENSGT00390000010309 #17	ENSGT00940000155815 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00390000006465 #20	ENSGT00940000154756.A #22	ENSGT00940000160371 #24	ENSGT00940000162155 #25	ENSGT01100000263514.A.e.b #26	ENSGT00940000153092.a.a.c.b #27	ENSGT01100000263474.a.b.b.e.b.a.a #28	ENSGT01100000263474.a.b.b.e.b.a.b #29	ENSGT00390000009510	ENSGT00940000163997 #31	ENSGT00940000160177 #32	ENSGT00940000159981.e.a #33	ENSGT00940000159981.e.b #34	ENSGT01060000248581.C.a.b.a.a #35	ENSGT00390000006224 #36	ENSGT01090000260018.C.b.a.a #37	ENSGT01090000260018.C.a ##37
Murinae	ANCESTRAL SPECIES	7	ENSGT00940000162415	ENSGT00900000143207	ENSGT00940000161967 #7	ENSGT00950000182755.b.a.a.a.a.b #9	ENSGT00940000159380 #10	ENSGT00950000182843.b #11	ENSGT00940000154494.a #12	ENSGT00940000159618 #13	ENSGT00940000160510 #14	ENSGT00950000183080.a.b.a.b.b #15	ENSGT00390000005590 #16	ENSGT00390000010309 #17	ENSGT00940000155815 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00390000006465 #20	ENSGT00940000154756.A #22	ENSGT00940000160371 #24	ENSGT00940000162155 #25	ENSGT01100000263514.A.e.b #26	ENSGT00940000153092.a.a.c.b #27	ENSGT01100000263474.a.b.b.e.b.a.a #28	ENSGT01100000263474.a.b.b.e.b.a.b #29	ENSGT00950000183522 #30	ENSGT00940000163997 #31	ENSGT00940000160177 #32	ENSGT00940000159981.e.a #33	ENSGT00940000159981.e.b #34	ENSGT01060000248581.C.a.b.a.a #35	ENSGT00390000006224 #36	ENSGT01090000260018.C.b.a.a #37	ENSGT01090000260018.C.a ##37
Mus	ANCESTRAL SPECIES	2	ENSGT00940000162415	ENSGT00900000143207	ENSGT00940000161967 #7	ENSGT00950000182755.b.a.a.a.a.b #9	ENSGT00940000159380 #10	ENSGT00950000182843.b #11	ENSGT00940000154494.a #12	ENSGT00940000159618 #13	ENSGT00940000160510 #14	ENSGT00950000183080.a.b.a.b.b #15	ENSGT00390000005590 #16	ENSGT00390000010309 #17	ENSGT00940000155815 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00390000006465 #20	ENSGT00940000154756.A #22	ENSGT00940000160371 #24	ENSGT00940000162155 #25	ENSGT01100000263514.A.e.b #26	ENSGT00940000153092.a.a.c.b #27	ENSGT01100000263474.a.b.b.e.b.a.a #28	ENSGT01100000263474.a.b.b.e.b.a.b #29	ENSGT00950000183522 #30	ENSGT00940000163997 #31	ENSGT00940000160177 #32	ENSGT00940000159981.e.a #33	ENSGT00940000159981.e.b #34	ENSGT00390000006224 #36	ENSGT01090000260018.C.b.a.a #37	ENSGT01090000260018.C.a ##37	ENSGT01090000259995.b.b.a.b.i
Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000162415	ENSGT00900000143207	ENSGT00940000161967 #7	ENSGT00950000182755.b.a.a.a.a.b #9	ENSGT00940000159380 #10	ENSGT00950000182843.b #11	ENSGT00940000154494.a #12	ENSGT00940000159618 #13	ENSGT00940000160510 #14	ENSGT00950000183080.a.b.a.b.b.g.a ##15	ENSGT00390000005590 #16	ENSGT00390000010309 #17	ENSGT00940000155815 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00390000006465 #20	ENSGT00940000154756.A #22	ENSGT00940000160371 #24	ENSGT00940000162155 #25	ENSGT01100000263514.A.e.b #26	ENSGT00940000153092.a.a.c.b #27	ENSGT01100000263474.a.b.b.e.b.a.a #28	ENSGT01100000263474.a.b.b.e.b.a.b #29	ENSGT00950000183522 #30	ENSGT00940000163997 #31	ENSGT00940000160177 #32	ENSGT00940000159981.e.a #33	ENSGT00940000159981.e.b #34	ENSGT00390000006224 #36	ENSGT01090000260018.C.b.a.a #37	ENSGT01090000260018.C.a ##37	ENSGT01090000259995.b.b.a.b.i.c.b
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000162415	ENSGT00900000143207	ENSGT00940000161967 #7	ENSGT00950000182755.b.a.a.a.a.b #9	ENSGT00940000159380 #10	ENSGT00950000182843.b #11	ENSGT00940000154494.a #12	ENSGT00940000159618 #13	ENSGT00940000160510 #14	ENSGT00950000183080.a.b.a.b.b.g.a ##15	ENSGT00390000005590 #16	ENSGT00390000010309 #17	ENSGT00940000155815 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00390000006465 #20	ENSGT00940000154756.A #22	ENSGT00940000160371 #24	ENSGT00940000162155 #25	ENSGT01100000263514.A.e.b #26	ENSGT00940000153092.a.a.c.b #27	ENSGT01100000263474.a.b.b.e.b.a.a #28	ENSGT01100000263474.a.b.b.e.b.a.b #29	ENSGT00950000183522 #30	ENSGT00940000163997 #31	ENSGT00940000160177 #32	ENSGT00940000159981.e.a #33	ENSGT00940000159981.e.b #34	ENSGT01060000248581.C.a.b.a.a.l #35	ENSGT00390000006224 #36	ENSGT01090000260018.C.b.a.a #37	ENSGT01090000260018.C.a ##37
Mus_C	ANCESTRAL SPECIES	3	ENSGT00940000162415	ENSGT00900000143207	ENSGT00940000161967 #7	ENSGT00950000182755.b.a.a.a.a.b #9	ENSGT00940000159380 #10	ENSGT00950000182843.b #11	ENSGT00940000154494.a #12	ENSGT00940000159618 #13	ENSGT00940000160510 #14	ENSGT00950000183080.a.b.a.b.b.g.b #15	ENSGT00390000005590 #16	ENSGT00390000010309 #17	ENSGT00940000155815 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00390000006465 #20	ENSGT00940000154756.A #22	ENSGT00940000160371 #24	ENSGT00940000162155 #25	ENSGT01100000263514.A.e.b #26	ENSGT00940000153092.a.a.c.b #27	ENSGT01100000263474.a.b.b.e.b.a.a #28	ENSGT01100000263474.a.b.b.e.b.a.b #29	ENSGT00950000183522 #30	ENSGT00940000163997 #31	ENSGT00940000160177 #32	ENSGT00940000159981.e.a #33	ENSGT00940000159981.e.b #34	ENSGT01060000248581.C.a.b.a.a.l #35	ENSGT00390000006224 #36	ENSGT01090000260018.C.b.a.a #37	ENSGT01090000260018.C.a ##37
Steppe mouse	MODERN SPECIES	3105	Zkscan17 (ENSMSIG00000020997) #7	ENSMSIG00000021018 #8	Zfp867 (ENSMSIG00000021023) #9	Jmjd4 (ENSMSIG00000021041) #10	Snap47 (ENSMSIG00000021067) #11	Prss38 (ENSMSIG00000021101) #12	Wnt9a (ENSMSIG00000021113) #13	Wnt3a (ENSMSIG00000021119) #14	ENSMSIG00000021128 #15	2310033P09Rik (ENSMSIG00000021149) #16	Mrpl55 (ENSMSIG00000021173) #17	Guk1 (ENSMSIG00000021189) #18	Gjc2 (ENSMSIG00000021219) #19	Iba57 (ENSMSIG00000021231) #20	ENSMSIG00000021247 #21	Obscn (ENSMSIG00000021262) #22	ENSMSIG00000021680 #23	Trim11 (ENSMSIG00000021692) #24	Trim17 (ENSMSIG00000021747) #25	H3f4 (ENSMSIG00000021760) #26	H2ac25 (ENSMSIG00000021773) #27	H2bc26-ps (ENSMSIG00000021777) #28	H2bc27 (ENSMSIG00000021813) #29	ENSMSIG00000021818 #30	Btnl10 (ENSMSIG00000021827) #31	Zfp39 (ENSMSIG00000021841) #32	2810021J22Rik (ENSMSIG00000021856) #33	Gm12258 (ENSMSIG00000021863) #34	Or5af2 (ENSMSIG00000021882) #35	ENSMSIG00000021888 #36	Or2t44 (ENSMSIG00000021908) #37
spretus	MODERN SPECIES	2	MGP_SPRETEiJ_G0017276	Or2b11 (MGP_SPRETEiJ_G0017275)	Nlrp3 (MGP_SPRETEiJ_G0017274)	Zkscan17 (MGP_SPRETEiJ_G0017273) #7	Zfp867 (MGP_SPRETEiJ_G0017272) #9	Jmjd4 (MGP_SPRETEiJ_G0017271) #10	Snap47 (MGP_SPRETEiJ_G0017270) #11	Prss38 (MGP_SPRETEiJ_G0017269) #12	Wnt9a (MGP_SPRETEiJ_G0017268) #13	Wnt3a (MGP_SPRETEiJ_G0017267) #14	2310033P09Rik (MGP_SPRETEiJ_G0017266) #16	Mrpl55 (MGP_SPRETEiJ_G0017265) #17	Guk1 (MGP_SPRETEiJ_G0017264) #18	Gjc2 (MGP_SPRETEiJ_G0017263) #19	Iba57 (MGP_SPRETEiJ_G0017262) #20	Obscn (MGP_SPRETEiJ_G0017261) #22	Trim11 (MGP_SPRETEiJ_G0017260) #24	Trim17 (MGP_SPRETEiJ_G0017259) #25	H2ac25 (MGP_SPRETEiJ_G0017258) #27	H2bc27 (MGP_SPRETEiJ_G0017257) #29	MGP_SPRETEiJ_G0017256 #30	Btnl10 (MGP_SPRETEiJ_G0017255) #31	Zfp39 (MGP_SPRETEiJ_G0017254) #32	2810021J22Rik (MGP_SPRETEiJ_G0017253) #33	Gm12258 (MGP_SPRETEiJ_G0017252) #34	Fam183b (MGP_SPRETEiJ_G0017251) #36	Or2t44 (MGP_SPRETEiJ_G0017250) #37	Or2t45 (MGP_SPRETEiJ_G0017249) ##37	MGP_SPRETEiJ_G0017248	MGP_SPRETEiJ_G0017247	Or11l3 (MGP_SPRETEiJ_G0017246)
Mouse	MODERN SPECIES	2	Or2b11 (ENSMUSG00000059610)	Nlrp3 (ENSMUSG00000032691)	Zkscan17 (ENSMUSG00000020472) #7	Zfp867 (ENSMUSG00000054519) #9	Jmjd4 (ENSMUSG00000036819) #10	Snap47 (ENSMUSG00000009894) #11	Prss38 (ENSMUSG00000049291) #12	Wnt9a (ENSMUSG00000000126) #13	Wnt3a (ENSMUSG00000009900) #14	Arf1 (ENSMUSG00000048076) ##15	2310033P09Rik (ENSMUSG00000020441) #16	Mrpl55 (ENSMUSG00000036860) #17	Guk1 (ENSMUSG00000020444) #18	Gjc2 (ENSMUSG00000043448) #19	Iba57 (ENSMUSG00000049287) #20	Obscn (ENSMUSG00000061462) #22	Trim11 (ENSMUSG00000020455) #24	H3f4 (ENSMUSG00000080152) #26	Trim17 (ENSMUSG00000036964) #25	H2ac25 (ENSMUSG00000078851) #27	H2bc26-ps (ENSMUSG00000080712) #28	H2bc27 (ENSMUSG00000056895) #29	Rnf187 (ENSMUSG00000020496) #30	Btnl10 (ENSMUSG00000020490) #31	Zfp39 (ENSMUSG00000037001) #32	2810021J22Rik (ENSMUSG00000020491) #33	Gm12258 (ENSMUSG00000072915) #34	Or9e1 (ENSMUSG00000094805) ##35	Or5af1 (ENSMUSG00000096806) ##35	Or5af2 (ENSMUSG00000070438) #35	Fam183b (ENSMUSG00000049154) #36
Ryukyu mouse	MODERN SPECIES	2	Nlrp3 (MGP_CAROLIEiJ_G0016439)	Zkscan17 (MGP_CAROLIEiJ_G0016438) #7	Zfp867 (MGP_CAROLIEiJ_G0016437) #9	Jmjd4 (MGP_CAROLIEiJ_G0016436) #10	MGP_CAROLIEiJ_G0016435 #11	Prss38 (MGP_CAROLIEiJ_G0016434) #12	Wnt9a (MGP_CAROLIEiJ_G0016433) #13	Wnt3a (MGP_CAROLIEiJ_G0016432) #14	MGP_CAROLIEiJ_G0016431 ##15	MGP_CAROLIEiJ_G0016430 ##15	2310033P09Rik (MGP_CAROLIEiJ_G0016429) #16	Mrpl55 (MGP_CAROLIEiJ_G0016428) #17	Guk1 (MGP_CAROLIEiJ_G0016427) #18	Gjc2 (MGP_CAROLIEiJ_G0016426) #19	Iba57 (MGP_CAROLIEiJ_G0016425) #20	MGP_CAROLIEiJ_G0016424 #22	Trim11 (MGP_CAROLIEiJ_G0016423) #24	Trim17 (MGP_CAROLIEiJ_G0016421) #25	H2ac25 (MGP_CAROLIEiJ_G0016422) #27	H2bc27 (MGP_CAROLIEiJ_G0016420) #29	MGP_CAROLIEiJ_G0016419 #30	Btnl10 (MGP_CAROLIEiJ_G0016418) #31	Zfp39 (MGP_CAROLIEiJ_G0016417) #32	2810021J22Rik (MGP_CAROLIEiJ_G0016416) #33	Gm12258 (MGP_CAROLIEiJ_G0016415) #34	Fam183b (MGP_CAROLIEiJ_G0016414) #36	Or2t44 (MGP_CAROLIEiJ_G0016413) #37	Or2t45 (MGP_CAROLIEiJ_G0016412) ##37	MGP_CAROLIEiJ_G0016411	MGP_CAROLIEiJ_G0016410	MGP_CAROLIEiJ_G0016409
Shrew mouse	MODERN SPECIES	5	Or2b11 (MGP_PahariEiJ_G0017570)	MGP_PahariEiJ_G0017569	Zkscan17 (MGP_PahariEiJ_G0017568) #7	Zfp867 (MGP_PahariEiJ_G0017567) #9	Jmjd4 (MGP_PahariEiJ_G0017566) #10	MGP_PahariEiJ_G0017565 #11	Prss38 (MGP_PahariEiJ_G0017564) #12	Wnt9a (MGP_PahariEiJ_G0017563) #13	Wnt3a (MGP_PahariEiJ_G0017562) #14	Arf1 (MGP_PahariEiJ_G0017561) #15	2310033P09Rik (MGP_PahariEiJ_G0017560) #16	Mrpl55 (MGP_PahariEiJ_G0017559) #17	Guk1 (MGP_PahariEiJ_G0017558) #18	Gjc2 (MGP_PahariEiJ_G0017557) #19	Iba57 (MGP_PahariEiJ_G0017556) #20	Obscn (MGP_PahariEiJ_G0017555) #22	Trim11 (MGP_PahariEiJ_G0017554) #24	Trim17 (MGP_PahariEiJ_G0017553) #25	H2ac25 (MGP_PahariEiJ_G0017552) #27	H2bc27 (MGP_PahariEiJ_G0017551) #29	MGP_PahariEiJ_G0017550 #30	Btnl10 (MGP_PahariEiJ_G0017549) #31	Zfp39 (MGP_PahariEiJ_G0017548) #32	2810021J22Rik (MGP_PahariEiJ_G0017547) #33	Gm12258 (MGP_PahariEiJ_G0017546) #34	Fam183b (MGP_PahariEiJ_G0017545) #36	Or2t44 (MGP_PahariEiJ_G0017544) #37	Or2t45 (MGP_PahariEiJ_G0017543) ##37	Trim58 (MGP_PahariEiJ_G0017542)	Or11l3 (MGP_PahariEiJ_G0017541)	MGP_PahariEiJ_G0017540
Rat	MODERN SPECIES	1	Nlrp3 (ENSRNOG00000003170)	Zfp496 (ENSRNOG00000003129) #7	Ftl1 (ENSRNOG00000020843)	Zfp867 (ENSRNOG00000022431) #9	Jmjd4 (ENSRNOG00000022438) #10	Snap47 (ENSRNOG00000022472) #11	Prss38 (ENSRNOG00000022548) #12	Wnt9a (ENSRNOG00000003066) #13	Wnt3a (ENSRNOG00000003039) #14	Arf1 (ENSRNOG00000060229) #15	C10h1orf35 (ENSRNOG00000002944) #16	Mrpl55 (ENSRNOG00000002943) #17	Guk1 (ENSRNOG00000002928) #18	Gjc2 (ENSRNOG00000038328) #19	Iba57 (ENSRNOG00000068756) #20	Obscn (ENSRNOG00000058068) #22	Trim11 (ENSRNOG00000002915) #24	H2ac25 (ENSRNOG00000022983) #25	H2ac25 (ENSRNOG00000064520) #27	H2bu1 (ENSRNOG00000066919) #28	Hist3h2ba (ENSRNOG00000043419) #29	Rnf187 (ENSRNOG00000049219) #30	Btnl10 (ENSRNOG00000043019) #31	Zfp39 (ENSRNOG00000014712) #32	LOC102555635 (ENSRNOG00000023431) #33	RGD1561277 (ENSRNOG00000051868)	Or9e1b (ENSRNOG00000062948) #35	Or5af1c (ENSRNOG00000069086) #35	Or5af1 (ENSRNOG00000069128) #35	Or5af1b (ENSRNOG00000065010) #35	Cfap144 (ENSRNOG00000002873) #36
Cricetidae	ANCESTRAL SPECIES		ENSGT00940000162415	ENSGT00900000143207	ENSGT00940000161967 #7	ENSGT00950000182755.b.a.a.a.a.b #9	ENSGT00940000159380 #10	ENSGT00950000182843.b #11	ENSGT00940000154494.a #12	ENSGT00940000159618 #13	ENSGT00940000160510 #14	ENSGT00950000183080.a.b.a.b.b #15	ENSGT00390000005590 #16	ENSGT00390000010309 #17	ENSGT00940000155815 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00390000006465 #20	ENSGT00940000154756.A #22	ENSGT00940000160371 #24	ENSGT00940000162155 #25	ENSGT01100000263514.A.e.b #26	ENSGT00940000153092.a.a.c.b #27	ENSGT01100000263474.a.b.b.e.b.a.a #28	ENSGT01100000263474.a.b.b.e.b.a.b #29	ENSGT00390000009510	ENSGT00940000163997 #31	ENSGT00940000160177 #32	ENSGT00940000159981.e.a #33	ENSGT00940000159981.e.b #34	ENSGT01060000248581.C.a.b.a.a #35	ENSGT00390000006224 #36	ENSGT01090000260018.C.b.a.a #37	ENSGT01090000260018.C.a ##37
Cricetinae	ANCESTRAL SPECIES		ENSGT00940000162415	ENSGT00900000143207	ENSGT00940000161967 #7	ENSGT00950000182755.b.a.a.a.a.b #9	ENSGT00940000159380 #10	ENSGT00950000182843.b #11	ENSGT00940000154494.a #12	ENSGT00940000159618 #13	ENSGT00940000160510 #14	ENSGT00950000183080.a.b.a.b.b #15	ENSGT00390000005590 #16	ENSGT00390000010309 #17	ENSGT00940000155815 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00390000006465 #20	ENSGT00940000154756.A #22	ENSGT00940000160371 #24	ENSGT00940000162155 #25	ENSGT01100000263514.A.e.b #26	ENSGT00940000153092.a.a.c.b #27	ENSGT01100000263474.a.b.b.e.b.a.a #28	ENSGT01100000263474.a.b.b.e.b.a.b #29	ENSGT00390000009510	ENSGT00940000163997 #31	ENSGT00940000160177 #32	ENSGT00940000159981.e.a #33	ENSGT00940000159981.e.b #34	ENSGT01060000248581.C.a.b.a.a #35	ENSGT00390000006224 #36	ENSGT01090000260018.C.b.a.a #37	ENSGT01090000260018.C.a ##37
Golden Hamster	MODERN SPECIES	627	Nlrp3 (ENSMAUG00000020051)	ENSMAUG00000006329	ENSMAUG00000017910	Zkscan17 (ENSMAUG00000016630) #7	ENSMAUG00000019046	Jmjd4 (ENSMAUG00000017265) #10	Snap47 (ENSMAUG00000020014) #11	Prss38 (ENSMAUG00000019978) #12	Wnt9a (ENSMAUG00000021643) #13	Wnt3a (ENSMAUG00000021475) #14	ENSMAUG00000022253 #15	2310033P09Rik (ENSMAUG00000019958) #16	Guk1 (ENSMAUG00000022283) #18	Gjc2 (ENSMAUG00000020150) #19	Iba57 (ENSMAUG00000020575) #20	Obscn (ENSMAUG00000022279) #22	Trim11 (ENSMAUG00000001510) #24	Trim17 (ENSMAUG00000004817) #25	H3f4 (ENSMAUG00000010700) #26	ENSMAUG00000010470	H2ac25 (ENSMAUG00000010628) #27	H2bc26-ps (ENSMAUG00000010794) #28	H2bc27 (ENSMAUG00000010540) #29	ENSMAUG00000021471	ENSMAUG00000020727	Btnl10 (ENSMAUG00000021399) #31	Zfp39 (ENSMAUG00000001536) #32	ENSMAUG00000002461 #34	ENSMAUG00000002837	Fam183b (ENSMAUG00000021857) #36	ENSMAUG00000010641
Chinese hamster chok1gshd	MODERN SPECIES	229	Nlrp3 (ENSCGRG00001021138)	ENSCGRG00001021260	Zkscan17 (ENSCGRG00001020767) #7	Zfp867 (ENSCGRG00001016010) #9	Jmjd4 (ENSCGRG00001013252) #10	Snap47 (ENSCGRG00001004500) #11	Prss38 (ENSCGRG00001019522) #12	Wnt9a (ENSCGRG00001016816) #13	Wnt3a (ENSCGRG00001015217) #14	Arf1 (ENSCGRG00001013922) #15	2310033P09Rik (ENSCGRG00001021154) #16	Mrpl55 (ENSCGRG00001020506) #17	ENSCGRG00001016847 #18	Gjc2 (ENSCGRG00001008796) #19	Iba57 (ENSCGRG00001007484) #20	Obscn (ENSCGRG00001023809) #22	Trim11 (ENSCGRG00001016227) #24	Trim17 (ENSCGRG00001017038) #25	ENSCGRG00001009610 #26	H2bc27 (ENSCGRG00001005703) #29	H2bc26-ps (ENSCGRG00001013795) #28	H2ac25 (ENSCGRG00001008750) #27	ENSCGRG00001017170	ENSCGRG00001015992	Zfp39 (ENSCGRG00001002406) #32	2810021J22Rik (ENSCGRG00001001041) #33	ENSCGRG00001012941	ENSCGRG00001007292 #35	ENSCGRG00001008023 #35	Fam183b (ENSCGRG00001024113) #36	Or2t44 (ENSCGRG00001022873) #37
Cricetidae_B	ANCESTRAL SPECIES		ENSGT01090000260044.A.b.a.a.a.b	ENSGT00940000162415	ENSGT00940000161967 #7	ENSGT00950000182755.b.a.a.a.a.b #9	ENSGT00940000159380 #10	ENSGT00950000182843.b #11	ENSGT00940000154494.a #12	ENSGT00940000159618 #13	ENSGT00940000160510 #14	ENSGT00950000183080.a.b.a.b.b #15	ENSGT00390000005590 #16	ENSGT00390000010309 #17	ENSGT00940000155815 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00390000006465 #20	ENSGT00940000154756.A #22	ENSGT00940000160371 #24	ENSGT00940000162155 #25	ENSGT01100000263514.A.e.b #26	ENSGT00940000153092.a.a.c.b #27	ENSGT01100000263474.a.b.b.e.b.a.a #28	ENSGT01100000263474.a.b.b.e.b.a.b #29	ENSGT00390000009510	ENSGT00940000163997 #31	ENSGT00940000160177 #32	ENSGT00940000159981.e.a #33	ENSGT00940000159981.e.b #34	ENSGT01060000248581.C.a.b.a.a #35	ENSGT00390000006224 #36	ENSGT01090000260018.C.b.a.a #37	ENSGT01090000260018.C.a ##37
Northern American deer mouse	MODERN SPECIES	21	Nlrp3 (ENSPEMG00000018349)	Zkscan17 (ENSPEMG00000028678) #7	Zfp867 (ENSPEMG00000015201) #9	Jmjd4 (ENSPEMG00000025158) #10	Snap47 (ENSPEMG00000003186) #11	Prss38 (ENSPEMG00000000315) #12	ENSPEMG00000026476	Wnt9a (ENSPEMG00000008917) #13	Wnt3a (ENSPEMG00000014970) #14	Arf1 (ENSPEMG00000024884) #15	2310033P09Rik (ENSPEMG00000016726) #16	Mrpl55 (ENSPEMG00000010381) #17	Guk1 (ENSPEMG00000007733) #18	Gjc2 (ENSPEMG00000015748) #19	Iba57 (ENSPEMG00000029448) #20	Obscn (ENSPEMG00000017360) #22	Trim11 (ENSPEMG00000013300) #24	Trim17 (ENSPEMG00000012957) #25	H3f4 (ENSPEMG00000028465) #26	H2ac25 (ENSPEMG00000025825) #27	H2bc26-ps (ENSPEMG00000029564) #28	H2bc27 (ENSPEMG00000029370) #29	ENSPEMG00000024885	Btnl10 (ENSPEMG00000010544) #31	Zfp39 (ENSPEMG00000009428) #32	2810021J22Rik (ENSPEMG00000028205) #33	Gm12258 (ENSPEMG00000029020) #34	ENSPEMG00000027643 #35	ENSPEMG00000025827 #35	Fam183b (ENSPEMG00000020878) #36	Or2t44 (ENSPEMG00000022635) #37
Prairie vole	MODERN SPECIES	15	ENSMOCG00000004021	ENSMOCG00000007500	Zkscan17 (ENSMOCG00000021773) #7	Zfp867 (ENSMOCG00000017475) #9	Jmjd4 (ENSMOCG00000019517) #10	Snap47 (ENSMOCG00000021698) #11	Prss38 (ENSMOCG00000020492) #12	Wnt9a (ENSMOCG00000022972) #13	Wnt3a (ENSMOCG00000022805) #14	Arf1 (ENSMOCG00000005344) #15	2310033P09Rik (ENSMOCG00000020633) #16	Mrpl55 (ENSMOCG00000022355) #17	Guk1 (ENSMOCG00000020868) #18	Gjc2 (ENSMOCG00000015445) #19	Iba57 (ENSMOCG00000019048) #20	Obscn (ENSMOCG00000009245) #22	Trim11 (ENSMOCG00000021941) #24	Trim17 (ENSMOCG00000016644) #25	H3f4 (ENSMOCG00000002973) #26	H2ac25 (ENSMOCG00000002942) #27	H2bc26-ps (ENSMOCG00000003080) #28	H2bc27 (ENSMOCG00000002061) #29	Rnf187 (ENSMOCG00000021645) #30	Btnl10 (ENSMOCG00000005486) #31	Zfp39 (ENSMOCG00000017961) #32	ENSMOCG00000003250 #34	ENSMOCG00000006893	Fam183b (ENSMOCG00000013813) #36	ENSMOCG00000011805 ##37	ENSMOCG00000002169	Trim58 (ENSMOCG00000019086)
Upper Galilee mountains blind mole rat	MODERN SPECIES	540													Guk1 (ENSNGAG00000022722) #18	Gjc2 (ENSNGAG00000022035) #19	Iba57 (ENSNGAG00000021761) #20	Obscn (ENSNGAG00000023799) #22	Trim11 (ENSNGAG00000023375) #24	Trim17 (ENSNGAG00000023965) #25	ENSNGAG00000011099 ##26	H2ac25 (ENSNGAG00000012071) #27	H2bc26-ps (ENSNGAG00000012301) #28	H2bc27 (ENSNGAG00000010344) #29	ENSNGAG00000019603	Btnl10 (ENSNGAG00000011467) #31	Zfp39 (ENSNGAG00000019853) #32	ENSNGAG00000012548	2810021J22Rik (ENSNGAG00000011744) #33	ENSNGAG00000024130	Fam183b (ENSNGAG00000019487) #36	ENSNGAG00000003871	ENSNGAG00000011228
Lesser Egyptian jerboa	MODERN SPECIES	63	Or2b11 (ENSJJAG00000004515)	Nlrp3 (ENSJJAG00000007323)	Zkscan17 (ENSJJAG00000022828) #7	Zfp867 (ENSJJAG00000008459) #9	Jmjd4 (ENSJJAG00000012776) #10	Snap47 (ENSJJAG00000023009) #11	Prss38 (ENSJJAG00000022512) #12	Wnt9a (ENSJJAG00000020971) #13	Wnt3a (ENSJJAG00000020598) #14	ENSJJAG00000020245 #15	2310033P09Rik (ENSJJAG00000001888) #16	Mrpl55 (ENSJJAG00000021164) #17	Guk1 (ENSJJAG00000021658) #18	Gjc2 (ENSJJAG00000011405) #19	Iba57 (ENSJJAG00000023432) #20	Obscn (ENSJJAG00000023196) #22	Trim11 (ENSJJAG00000019654) #24	Trim17 (ENSJJAG00000017850) #25	ENSJJAG00000017460 ##26	H2ac25 (ENSJJAG00000004184) #27	H2bc26-ps (ENSJJAG00000003959) #28	ENSJJAG00000011864	Btnl10 (ENSJJAG00000023413) #31	Zfp39 (ENSJJAG00000018925) #32	ENSJJAG00000000550	Fam183b (ENSJJAG00000018849) #36	Or2t44 (ENSJJAG00000018515) #37	ENSJJAG00000003913	Trim58 (ENSJJAG00000016816)	Or11l3 (ENSJJAG00000002201)	ENSJJAG00000012885
Kangaroo rat	MODERN SPECIES	346										ENSDORG00000027626	Nlrp3 (ENSDORG00000010673)	Zkscan17 (ENSDORG00000028040) #7	Wnt9a (ENSDORG00000005390) #13	ENSDORG00000027855 #15	Guk1 (ENSDORG00000007614) #18	Obscn (ENSDORG00000016208) #22	Trim11 (ENSDORG00000029829) #24	H2ac25 (ENSDORG00000026130) #27	H2bc26-ps (ENSDORG00000024270) #28	ENSDORG00000005512	Sh3bp5l (ENSDORG00000007183)	Fasl (ENSDORG00000011897)	Suco (ENSDORG00000011895)	Pigc (ENSDORG00000030248)	Dnm3 (ENSDORG00000002505)	Mettl13 (ENSDORG00000011976)	Prrc2c (ENSDORG00000001422)	Fmo1 (ENSDORG00000029306)	Fmo2 (ENSDORG00000004731)	Fmo3 (ENSDORG00000006804)	ENSDORG00000003154
Rodentia_A	ANCESTRAL SPECIES	31	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT01090000260044.A.b.a.a.a.b	ENSGT00940000162415	ENSGT00940000161967 #7	ENSGT00940000159380 #10	ENSGT00950000182843.b #11	ENSGT00940000154494.a #12	ENSGT00940000159618 #13	ENSGT00940000160510 #14	ENSGT00950000183080.a.b.a.b.b #15	ENSGT00390000005590 #16	ENSGT00390000010309 #17	ENSGT00940000155815 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00390000006465 #20	ENSGT00940000154756.A #22	ENSGT00940000160371 #24	ENSGT00940000162155 #25	ENSGT01100000263514.A.e.b #26	ENSGT00940000153092.a.a.c.b #27	ENSGT01100000263474.a.b.b.e.b.a.a #28	ENSGT01100000263474.a.b.b.e.b.a.b #29	ENSGT00390000009510	ENSGT00940000163997 #31
Hystricomorpha	ANCESTRAL SPECIES	63	ENSGT01090000260044.A.b.a.a.a.a.a.c	ENSGT01090000260044.A.b.a.a.a.b	ENSGT00940000162415	ENSGT00940000161967 #7	ENSGT00940000159380 #10	ENSGT00950000182843.b #11	ENSGT00940000154494.a #12	ENSGT00940000159618 #13	ENSGT00940000160510 #14	ENSGT00950000183080.a.b.a.b.b #15	ENSGT00390000005590 #16	ENSGT00390000010309 #17	ENSGT00940000155815 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00390000006465 #20	ENSGT00940000154756.A #22	ENSGT00940000160371 #24	ENSGT00940000162155 #25	ENSGT01100000263514.A.e.b #26	ENSGT00940000153092.a.a.c.b #27	ENSGT01100000263474.a.b.b.e.b.a.a #28	ENSGT01100000263474.a.b.b.e.b.a.b #29	ENSGT00390000009510	ENSGT00940000163997 #31
Naked mole-rat female	MODERN SPECIES		ENSHGLG00000000671	ENSHGLG00000043542	ENSHGLG00000001102 #7	ENSHGLG00000047340 ##9	JMJD4 (ENSHGLG00000001365) #10	ENSHGLG00000001357 #11	PRSS38 (ENSHGLG00000043627) #12	WNT9A (ENSHGLG00000038418) #13	WNT3A (ENSHGLG00000001502) #14	ARF1 (ENSHGLG00000038119) #15	ENSHGLG00000001640 #16	MRPL55 (ENSHGLG00000048301) #17	GUK1 (ENSHGLG00000000309) #18	GJC2 (ENSHGLG00000033969) #19	IBA57 (ENSHGLG00000002132) #20	OBSCN (ENSHGLG00000047806) #22	TRIM11 (ENSHGLG00000002253) #24	TRIM17 (ENSHGLG00000006970) #25	H3-4 (ENSHGLG00000020558) #26	H2AC25 (ENSHGLG00000037975) #27	H2BC26 (ENSHGLG00000044541) #28	ENSHGLG00000035981 #29	ENSHGLG00000000597	ENSHGLG00000038457 #31	ENSHGLG00000049243	ENSHGLG00000033964	ENSHGLG00000032928	ENSHGLG00000046686	ENSHGLG00000047273	ENSHGLG00000019679	ENSHGLG00000019790
Hystricomorpha_a	ANCESTRAL SPECIES	79	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT01090000260044.A.b.a.a.a.b	ENSGT00940000162415	ENSGT00940000161967 #7	ENSGT00940000159380 #10	ENSGT00950000182843.b #11	ENSGT00940000154494.a #12	ENSGT00940000159618 #13	ENSGT00940000160510 #14	ENSGT00950000183080.a.b.a.b.b #15	ENSGT00390000005590 #16	ENSGT00390000010309 #17	ENSGT00940000155815 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00390000006465 #20	ENSGT00940000154756.A #22	ENSGT00940000160371 #24	ENSGT00940000162155 #25	ENSGT01100000263514.A.e.b #26	ENSGT01100000263474.a.b.b.e.b.a.a #28	ENSGT01100000263474.a.b.b.e.b.a.b #29	ENSGT00390000009510	ENSGT00940000163997 #31
Hystricomorpha_b	ANCESTRAL SPECIES	106	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT01090000260044.A.b.a.a.a.b	ENSGT00940000162415	ENSGT00940000161967 #7	ENSGT00940000159380 #10	ENSGT00950000182843.b #11	ENSGT00940000159618 #13	ENSGT00940000160510 #14	ENSGT00950000183080.a.b.a.b.b #15	ENSGT00390000005590 #16	ENSGT00390000010309 #17	ENSGT00940000155815 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00390000006465 #20	ENSGT00940000154756.A #22	ENSGT00940000160371 #24	ENSGT00940000162155 #25	ENSGT01100000263474.a.b.b.e.b.a.a #28	ENSGT01100000263474.a.b.b.e.b.a.b #29	ENSGT00390000009510	ENSGT00940000163997 #31	ENSGT00940000160177 #32
Long-tailed chinchilla	MODERN SPECIES	288	OR9H1P (ENSCLAG00000017416)	OR2G3 (ENSCLAG00000017414)	ENSCLAG00000000375	OR2B11 (ENSCLAG00000017578)	NLRP3 (ENSCLAG00000000708)	ZNF496 (ENSCLAG00000000579) #7	JMJD4 (ENSCLAG00000000501) #10	SNAP47 (ENSCLAG00000000744) #11	WNT9A (ENSCLAG00000000535) #13	WNT3A (ENSCLAG00000000529) #14	ARF1 (ENSCLAG00000000520) #15	C1orf35 (ENSCLAG00000001077) #16	MRPL55 (ENSCLAG00000000917) #17	GUK1 (ENSCLAG00000000853) #18	IBA57 (ENSCLAG00000000741) #20	ENSCLAG00000000505 #22	TRIM11 (ENSCLAG00000000197) #24	TRIM17 (ENSCLAG00000000538) #25	H2BC26 (ENSCLAG00000017444) #28	ENSCLAG00000017452 #29	RNF187 (ENSCLAG00000001629)	ENSCLAG00000001526	ENSCLAG00000001377
Sciuridae	ANCESTRAL SPECIES	55	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT01090000260044.A.b.a.a.a.b	ENSGT00940000162415	ENSGT00940000161967 #7	ENSGT00940000159380 #10	ENSGT00950000182843.b #11	ENSGT00940000154494.a #12	ENSGT00940000159618 #13	ENSGT00940000160510 #14	ENSGT00950000183080.a.b.a.b.b #15	ENSGT00390000005590 #16	ENSGT00390000010309 #17	ENSGT00940000155815 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00390000006465 #20	ENSGT00940000154756.A #22	ENSGT00940000160371 #24	ENSGT00940000162155 #25	ENSGT01100000263514.A.e.b #26	ENSGT00940000153092.a.a.c.b #27	ENSGT01100000263474.a.b.b.e.b.a.a #28	ENSGT01100000263474.a.b.b.e.b.a.b #29	ENSGT00390000009510	ENSGT00940000163997 #31
Eurasian red squirrel	MODERN SPECIES	15	OR2C3 (ENSSVLG00005004659)	NLRP3 (ENSSVLG00005004506)	JMJD4 (ENSSVLG00005004411) #10	SNAP47 (ENSSVLG00005004391) #11	PRSS38 (ENSSVLG00005004365) #12	WNT9A (ENSSVLG00005004346) #13	WNT3A (ENSSVLG00005004327) #14	ENSSVLG00005004310 #15	C1orf35 (ENSSVLG00005004286) #16	MRPL55 (ENSSVLG00005004258) #17	ENSSVLG00005004242	GUK1 (ENSSVLG00005004220) #18	ENSSVLG00005004192	GJC2 (ENSSVLG00005004174) #19	IBA57 (ENSSVLG00005004163) #20	OBSCN (ENSSVLG00005004022) #22	TRIM11 (ENSSVLG00005003920) #24	TRIM17 (ENSSVLG00005003894) #25	H3-4 (ENSSVLG00005003884) #26	H2AC25 (ENSSVLG00005003875) #27	H2BC26 (ENSSVLG00005003865) #28	ENSSVLG00005003856 #29	RNF187 (ENSSVLG00005003848)	ENSSVLG00005003828 #31	ENSSVLG00005003818	ZNF496 (ENSSVLG00005003801) #7
Marmotini	ANCESTRAL SPECIES	100	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT01090000260044.A.b.a.a.a.b	ENSGT00940000162415	ENSGT00940000161967 #7	ENSGT00940000159380 #10	ENSGT00950000182843.b #11	ENSGT00940000154494.a #12	ENSGT00940000159618 #13	ENSGT00940000160510 #14	ENSGT00950000183080.a.b.a.b.b #15	ENSGT00390000005590 #16	ENSGT00390000010309 #17	ENSGT00940000155815 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00390000006465 #20	ENSGT00940000154756.A #22	ENSGT00940000160371 #24	ENSGT00940000162155 #25	ENSGT01100000263514.A.e.b #26	ENSGT00940000153092.a.a.c.b #27	ENSGT01100000263474.a.b.b.e.b.a.a #28	ENSGT01100000263474.a.b.b.e.b.a.b #29	ENSGT00390000009510	ENSGT00940000163997 #31
Alpin marmot	MODERN SPECIES	56	OR2B11 (ENSMMMG00000017357)	NLRP3 (ENSMMMG00000017362)	ZNF496 (ENSMMMG00000017364) #7	ENSMMMG00000017372	ENSMMMG00000017378	JMJD4 (ENSMMMG00000017399) #10	SNAP47 (ENSMMMG00000017415) #11	PRSS38 (ENSMMMG00000017421) #12	WNT9A (ENSMMMG00000017429) #13	WNT3A (ENSMMMG00000017437) #14	ENSMMMG00000017464 #15	MRPL55 (ENSMMMG00000017475) #17	GUK1 (ENSMMMG00000017488) #18	GJC2 (ENSMMMG00000017501) #19	IBA57 (ENSMMMG00000017504) #20	OBSCN (ENSMMMG00000017510) #22	TRIM11 (ENSMMMG00000017547) #24	TRIM17 (ENSMMMG00000017550) #25	H3-4 (ENSMMMG00000017555) #26	H2AC25 (ENSMMMG00000017567) #27	H2BC26 (ENSMMMG00000017570) #28	ENSMMMG00000017596 #29	RNF187 (ENSMMMG00000017598)	ENSMMMG00000017603 #31	ENSMMMG00000017616 #32