Mus	ANCESTRAL SPECIES	2	ENSGT00940000162415 #8	ENSGT00900000143207	ENSGT00940000161967 #9	ENSGT00950000182755.b.a.a.a.a.b #10	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #25	ENSGT01100000263514.A.e.b #24	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a #27	ENSGT01100000263474.a.b.b.e.b.a.b #28	ENSGT00950000183522 #29	ENSGT00940000163997 #30	ENSGT00940000160177 #31	ENSGT00940000159981.e.a #32	ENSGT00940000159981.e.b #33	ENSGT00390000006224 #37	ENSGT01090000260018.C.b.a.a	ENSGT01090000260018.C.a	ENSGT01090000259995.b.b.a.b.i
Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000162415 #8	ENSGT00900000143207	ENSGT00940000161967 #9	ENSGT00950000182755.b.a.a.a.a.b #10	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b.g.a #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #25	ENSGT01100000263514.A.e.b #24	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a #27	ENSGT01100000263474.a.b.b.e.b.a.b #28	ENSGT00950000183522 #29	ENSGT00940000163997 #30	ENSGT00940000160177 #31	ENSGT00940000159981.e.a #32	ENSGT00940000159981.e.b #33	ENSGT00390000006224 #37	ENSGT01090000260018.C.b.a.a	ENSGT01090000260018.C.a	ENSGT01090000259995.b.b.a.b.i.c.b
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000162415 #8	ENSGT00900000143207	ENSGT00940000161967 #9	ENSGT00950000182755.b.a.a.a.a.b #10	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b.g.a #16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #25	ENSGT01100000263514.A.e.b #24	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a #27	ENSGT01100000263474.a.b.b.e.b.a.b #28	ENSGT00950000183522 #29	ENSGT00940000163997 #30	ENSGT00940000160177 #31	ENSGT00940000159981.e.a #32	ENSGT00940000159981.e.b #33	ENSGT01060000248581.C.a.b.a.a.l #36	ENSGT00390000006224 #37	ENSGT01090000260018.C.b.a.a	ENSGT01090000260018.C.a
Mouse	MODERN SPECIES	2	Or2b11 (ENSMUSG00000059610) #7	Nlrp3 (ENSMUSG00000032691) #8	Zkscan17 (ENSMUSG00000020472) #9	Zfp867 (ENSMUSG00000054519) #10	Jmjd4 (ENSMUSG00000036819) #11	Snap47 (ENSMUSG00000009894) #12	Prss38 (ENSMUSG00000049291) #13	Wnt9a (ENSMUSG00000000126) #14	Wnt3a (ENSMUSG00000009900) #15	Arf1 (ENSMUSG00000048076) #16	2310033P09Rik (ENSMUSG00000020441) #17	Mrpl55 (ENSMUSG00000036860) #18	Guk1 (ENSMUSG00000020444) #19	Gjc2 (ENSMUSG00000043448) #20	Iba57 (ENSMUSG00000049287) #21	Obscn (ENSMUSG00000061462) #22	Trim11 (ENSMUSG00000020455) #23	H3f4 (ENSMUSG00000080152) #24	Trim17 (ENSMUSG00000036964) #25	H2ac25 (ENSMUSG00000078851) #26	H2bc26-ps (ENSMUSG00000080712) #27	H2bc27 (ENSMUSG00000056895) #28	Rnf187 (ENSMUSG00000020496) #29	Btnl10 (ENSMUSG00000020490) #30	Zfp39 (ENSMUSG00000037001) #31	2810021J22Rik (ENSMUSG00000020491) #32	Gm12258 (ENSMUSG00000072915) #33	Or9e1 (ENSMUSG00000094805) #34	Or5af1 (ENSMUSG00000096806) #35	Or5af2 (ENSMUSG00000070438) #36	Fam183b (ENSMUSG00000049154) #37
Mus_C	ANCESTRAL SPECIES	3	ENSGT00940000162415 #8	ENSGT00900000143207	ENSGT00940000161967 #9	ENSGT00950000182755.b.a.a.a.a.b #10	ENSGT00940000159380 #11	ENSGT00950000182843.b #12	ENSGT00940000154494.a #13	ENSGT00940000159618 #14	ENSGT00940000160510 #15	ENSGT00950000183080.a.b.a.b.b.g.b ##16	ENSGT00390000005590 #17	ENSGT00390000010309 #18	ENSGT00940000155815 #19	ENSGT01090000260005.a.a.a.b.a.a.a #20	ENSGT00390000006465 #21	ENSGT00940000154756.A #22	ENSGT00940000160371 #23	ENSGT00940000162155 #25	ENSGT01100000263514.A.e.b #24	ENSGT00940000153092.a.a.c.b #26	ENSGT01100000263474.a.b.b.e.b.a.a #27	ENSGT01100000263474.a.b.b.e.b.a.b #28	ENSGT00950000183522 #29	ENSGT00940000163997 #30	ENSGT00940000160177 #31	ENSGT00940000159981.e.a #32	ENSGT00940000159981.e.b #33	ENSGT01060000248581.C.a.b.a.a.l #36	ENSGT00390000006224 #37	ENSGT01090000260018.C.b.a.a	ENSGT01090000260018.C.a
Steppe mouse	MODERN SPECIES	3105	Zkscan17 (ENSMSIG00000020997) #9	ENSMSIG00000021018	Zfp867 (ENSMSIG00000021023) #10	Jmjd4 (ENSMSIG00000021041) #11	Snap47 (ENSMSIG00000021067) #12	Prss38 (ENSMSIG00000021101) #13	Wnt9a (ENSMSIG00000021113) #14	Wnt3a (ENSMSIG00000021119) #15	ENSMSIG00000021128 ##16	2310033P09Rik (ENSMSIG00000021149) #17	Mrpl55 (ENSMSIG00000021173) #18	Guk1 (ENSMSIG00000021189) #19	Gjc2 (ENSMSIG00000021219) #20	Iba57 (ENSMSIG00000021231) #21	ENSMSIG00000021247	Obscn (ENSMSIG00000021262) #22	ENSMSIG00000021680	Trim11 (ENSMSIG00000021692) #23	Trim17 (ENSMSIG00000021747) #25	H3f4 (ENSMSIG00000021760) #24	H2ac25 (ENSMSIG00000021773) #26	H2bc26-ps (ENSMSIG00000021777) #27	H2bc27 (ENSMSIG00000021813) #28	ENSMSIG00000021818 #29	Btnl10 (ENSMSIG00000021827) #30	Zfp39 (ENSMSIG00000021841) #31	2810021J22Rik (ENSMSIG00000021856) #32	Gm12258 (ENSMSIG00000021863) #33	Or5af2 (ENSMSIG00000021882) #36	ENSMSIG00000021888 #37	Or2t44 (ENSMSIG00000021908)
spretus	MODERN SPECIES	2	MGP_SPRETEiJ_G0017276 ##7	Or2b11 (MGP_SPRETEiJ_G0017275) #7	Nlrp3 (MGP_SPRETEiJ_G0017274) #8	Zkscan17 (MGP_SPRETEiJ_G0017273) #9	Zfp867 (MGP_SPRETEiJ_G0017272) #10	Jmjd4 (MGP_SPRETEiJ_G0017271) #11	Snap47 (MGP_SPRETEiJ_G0017270) #12	Prss38 (MGP_SPRETEiJ_G0017269) #13	Wnt9a (MGP_SPRETEiJ_G0017268) #14	Wnt3a (MGP_SPRETEiJ_G0017267) #15	2310033P09Rik (MGP_SPRETEiJ_G0017266) #17	Mrpl55 (MGP_SPRETEiJ_G0017265) #18	Guk1 (MGP_SPRETEiJ_G0017264) #19	Gjc2 (MGP_SPRETEiJ_G0017263) #20	Iba57 (MGP_SPRETEiJ_G0017262) #21	Obscn (MGP_SPRETEiJ_G0017261) #22	Trim11 (MGP_SPRETEiJ_G0017260) #23	Trim17 (MGP_SPRETEiJ_G0017259) #25	H2ac25 (MGP_SPRETEiJ_G0017258) #26	H2bc27 (MGP_SPRETEiJ_G0017257) #28	MGP_SPRETEiJ_G0017256 #29	Btnl10 (MGP_SPRETEiJ_G0017255) #30	Zfp39 (MGP_SPRETEiJ_G0017254) #31	2810021J22Rik (MGP_SPRETEiJ_G0017253) #32	Gm12258 (MGP_SPRETEiJ_G0017252) #33	Fam183b (MGP_SPRETEiJ_G0017251) #37	Or2t44 (MGP_SPRETEiJ_G0017250)	Or2t45 (MGP_SPRETEiJ_G0017249)	MGP_SPRETEiJ_G0017248	MGP_SPRETEiJ_G0017247	Or11l3 (MGP_SPRETEiJ_G0017246)
Ryukyu mouse	MODERN SPECIES	2	Nlrp3 (MGP_CAROLIEiJ_G0016439) #8	Zkscan17 (MGP_CAROLIEiJ_G0016438) #9	Zfp867 (MGP_CAROLIEiJ_G0016437) #10	Jmjd4 (MGP_CAROLIEiJ_G0016436) #11	MGP_CAROLIEiJ_G0016435 #12	Prss38 (MGP_CAROLIEiJ_G0016434) #13	Wnt9a (MGP_CAROLIEiJ_G0016433) #14	Wnt3a (MGP_CAROLIEiJ_G0016432) #15	MGP_CAROLIEiJ_G0016431 #16	MGP_CAROLIEiJ_G0016430 #16	2310033P09Rik (MGP_CAROLIEiJ_G0016429) #17	Mrpl55 (MGP_CAROLIEiJ_G0016428) #18	Guk1 (MGP_CAROLIEiJ_G0016427) #19	Gjc2 (MGP_CAROLIEiJ_G0016426) #20	Iba57 (MGP_CAROLIEiJ_G0016425) #21	MGP_CAROLIEiJ_G0016424 #22	Trim11 (MGP_CAROLIEiJ_G0016423) #23	Trim17 (MGP_CAROLIEiJ_G0016421) #25	H2ac25 (MGP_CAROLIEiJ_G0016422) #26	H2bc27 (MGP_CAROLIEiJ_G0016420) #28	MGP_CAROLIEiJ_G0016419 #29	Btnl10 (MGP_CAROLIEiJ_G0016418) #30	Zfp39 (MGP_CAROLIEiJ_G0016417) #31	2810021J22Rik (MGP_CAROLIEiJ_G0016416) #32	Gm12258 (MGP_CAROLIEiJ_G0016415) #33	Fam183b (MGP_CAROLIEiJ_G0016414) #37	Or2t44 (MGP_CAROLIEiJ_G0016413)	Or2t45 (MGP_CAROLIEiJ_G0016412)	MGP_CAROLIEiJ_G0016411	MGP_CAROLIEiJ_G0016410	MGP_CAROLIEiJ_G0016409
Shrew mouse	MODERN SPECIES	5	Or2b11 (MGP_PahariEiJ_G0017570) #7	MGP_PahariEiJ_G0017569 #8	Zkscan17 (MGP_PahariEiJ_G0017568) #9	Zfp867 (MGP_PahariEiJ_G0017567) #10	Jmjd4 (MGP_PahariEiJ_G0017566) #11	MGP_PahariEiJ_G0017565 #12	Prss38 (MGP_PahariEiJ_G0017564) #13	Wnt9a (MGP_PahariEiJ_G0017563) #14	Wnt3a (MGP_PahariEiJ_G0017562) #15	Arf1 (MGP_PahariEiJ_G0017561) #16	2310033P09Rik (MGP_PahariEiJ_G0017560) #17	Mrpl55 (MGP_PahariEiJ_G0017559) #18	Guk1 (MGP_PahariEiJ_G0017558) #19	Gjc2 (MGP_PahariEiJ_G0017557) #20	Iba57 (MGP_PahariEiJ_G0017556) #21	Obscn (MGP_PahariEiJ_G0017555) #22	Trim11 (MGP_PahariEiJ_G0017554) #23	Trim17 (MGP_PahariEiJ_G0017553) #25	H2ac25 (MGP_PahariEiJ_G0017552) #26	H2bc27 (MGP_PahariEiJ_G0017551) #28	MGP_PahariEiJ_G0017550 #29	Btnl10 (MGP_PahariEiJ_G0017549) #30	Zfp39 (MGP_PahariEiJ_G0017548) #31	2810021J22Rik (MGP_PahariEiJ_G0017547) #32	Gm12258 (MGP_PahariEiJ_G0017546) #33	Fam183b (MGP_PahariEiJ_G0017545) #37	Or2t44 (MGP_PahariEiJ_G0017544)	Or2t45 (MGP_PahariEiJ_G0017543)	Trim58 (MGP_PahariEiJ_G0017542)	Or11l3 (MGP_PahariEiJ_G0017541)	MGP_PahariEiJ_G0017540