Mus	ANCESTRAL SPECIES	23	ENSGT00940000153222.a.a #8	ENSGT00950000182959.a.a #9	ENSGT00950000182959.a.b.b.a #10	ENSGT00940000159215 #11	ENSGT00940000160698 #12	ENSGT00940000156120.a #13	ENSGT00390000000406 #14	ENSGT00940000155394 #15	ENSGT00390000000360.r.b.a.b	ENSGT00940000158014 #16	ENSGT00940000157713 #17	ENSGT00940000154980 #18	ENSGT00530000063074.b.b #19	ENSGT00940000156622 #20	ENSGT00390000002417 #21	ENSGT00940000153362.a #22	ENSGT00440000039564.b #23	ENSGT00390000018775 #24	ENSGT00940000160727 #25	ENSGT00940000162357 #27	ENSGT00940000162547 #26	ENSGT00940000159670 #28	ENSGT00940000157371 #29	ENSGT00940000162576 #30	ENSGT00940000155878 #32	ENSGT00950000182885.A.b #33	ENSGT00940000156429.x #34	ENSGT00940000156786 #35	ENSGT00390000017998 #36	ENSGT00940000161088 #37	ENSGT00390000001116
Mus_A	ANCESTRAL SPECIES	11	ENSGT00940000153222.a.a #8	ENSGT00950000182959.a.a #9	ENSGT00950000182959.a.b.b.a #10	ENSGT00940000159215 #11	ENSGT00940000160698 #12	ENSGT00940000156120.a #13	ENSGT00390000000406 #14	ENSGT00940000155394 #15	ENSGT00390000000360.r.b.a.b	ENSGT00940000158014 #16	ENSGT00940000157713 #17	ENSGT00940000154980 #18	ENSGT00530000063074.b.b #19	ENSGT00940000156622 #20	ENSGT00390000002417 #21	ENSGT00940000153362.a #22	ENSGT00440000039564.b #23	ENSGT00390000018775 #24	ENSGT00940000160727 #25	ENSGT00940000162357 #27	ENSGT00940000162547 #26	ENSGT00940000159670 #28	ENSGT00940000157371 #29	ENSGT00940000162576 #30	ENSGT00900000143684 #31	ENSGT00940000155878 #32	ENSGT00950000182885.A.b #33	ENSGT00940000156429.x #34	ENSGT00940000156786 #35	ENSGT00390000017998 #36	ENSGT00940000161088 #37
Mus_B	ANCESTRAL SPECIES	10	ENSGT00940000153222.a.a #8	ENSGT00950000182959.a.a #9	ENSGT00950000182959.a.b.b.a #10	ENSGT00940000159215 #11	ENSGT00940000160698 #12	ENSGT00940000156120.a #13	ENSGT00390000000406 #14	ENSGT00940000155394 #15	ENSGT00390000000360.r.b.a.b	ENSGT00940000158014 #16	ENSGT00940000157713 #17	ENSGT00940000154980 #18	ENSGT00530000063074.b.b #19	ENSGT00940000156622 #20	ENSGT00390000002417 #21	ENSGT00940000153362.a #22	ENSGT00440000039564.b #23	ENSGT00390000018775 #24	ENSGT00940000160727 #25	ENSGT00940000162547.i.a #26	ENSGT00940000162357 #27	ENSGT00940000162547.i.b ##26	ENSGT00940000159670 #28	ENSGT00940000157371 #29	ENSGT00940000162576 #30	ENSGT00900000143684 #31	ENSGT00940000155878 #32	ENSGT00950000182885.A.b #33	ENSGT00940000156429.x #34	ENSGT00940000156786 #35	ENSGT00390000017998 #36
Mus_C	ANCESTRAL SPECIES	7	ENSGT00940000157479 #7	ENSGT00940000153222.a.a #8	ENSGT00950000182959.a.a #9	ENSGT00950000182959.a.b.b.a #10	ENSGT00940000159215 #11	ENSGT00940000160698 #12	ENSGT00940000156120.a #13	ENSGT00390000000406 #14	ENSGT00940000155394 #15	ENSGT00940000158014 #16	ENSGT00940000157713 #17	ENSGT00940000154980 #18	ENSGT00530000063074.b.b #19	ENSGT00940000156622 #20	ENSGT00390000002417 #21	ENSGT00940000153362.a #22	ENSGT00440000039564.b #23	ENSGT00390000018775 #24	ENSGT00940000160727 #25	ENSGT00940000162547.i.a #26	ENSGT00940000162357 #27	ENSGT00940000159670 #28	ENSGT00940000157371 #29	ENSGT00940000162576 #30	ENSGT00900000143684 #31	ENSGT00940000155878 #32	ENSGT00950000182885.A.b #33	ENSGT00940000156429.x #34	ENSGT00940000156786 #35	ENSGT00390000017998 #36	ENSGT00940000161088 #37
spretus	MODERN SPECIES	1	Acss3 (MGP_SPRETEiJ_G0016605) #7	Lin7a (MGP_SPRETEiJ_G0016606) #8	Myf5 (MGP_SPRETEiJ_G0016607) #9	Myf6 (MGP_SPRETEiJ_G0016608) #10	Ptprq (MGP_SPRETEiJ_G0016609) #11	Otogl (MGP_SPRETEiJ_G0016610) #12	Ppp1r12a (MGP_SPRETEiJ_G0016611) #13	Pawr (MGP_SPRETEiJ_G0016612) #14	Syt1 (MGP_SPRETEiJ_G0016613) #15	Nav3 (MGP_SPRETEiJ_G0016614) #16	E2f7 (MGP_SPRETEiJ_G0016615) #17	Csrp2 (MGP_SPRETEiJ_G0016616) #18	Zdhhc17 (MGP_SPRETEiJ_G0016617) #19	Osbpl8 (MGP_SPRETEiJ_G0016618) #20	Bbs10 (MGP_SPRETEiJ_G0016619) #21	Nap1l1 (MGP_SPRETEiJ_G0016620) #22	Phlda1 (MGP_SPRETEiJ_G0016621) #23	Krr1 (MGP_SPRETEiJ_G0016622) #24	Glipr1 (MGP_SPRETEiJ_G0016623) #25	MGP_SPRETEiJ_G0016624 #26	MGP_SPRETEiJ_G0016625 #27	MGP_SPRETEiJ_G0016626 #28	Kcnc2 (MGP_SPRETEiJ_G0016627) #29	Atxn7l3b (MGP_SPRETEiJ_G0016628) #30	MGP_SPRETEiJ_G0016629 #31	Trhde (MGP_SPRETEiJ_G0016630) #32	Tph2 (MGP_SPRETEiJ_G0016631) #33	Tbc1d15 (MGP_SPRETEiJ_G0016632) #34	Rab21 (MGP_SPRETEiJ_G0016633) #35	Tmem19 (MGP_SPRETEiJ_G0016634) #36	Thap2 (MGP_SPRETEiJ_G0016635) #37
Steppe mouse	MODERN SPECIES	2665														Osbpl8 (ENSMSIG00000026078) #20	Bbs10 (ENSMSIG00000026174) #21	Nap1l1 (ENSMSIG00000026178) #22	Phlda1 (ENSMSIG00000026240) #23	Krr1 (ENSMSIG00000026247) #24	Glipr1 (ENSMSIG00000026281) #25
Mouse	MODERN SPECIES	1	Lin7a (ENSMUSG00000019906) #8	Myf5 (ENSMUSG00000000435) #9	Myf6 (ENSMUSG00000035923) #10	Ptprq (ENSMUSG00000035916) #11	Otogl (ENSMUSG00000091455) #12	Ppp1r12a (ENSMUSG00000019907) #13	Pawr (ENSMUSG00000035873) #14	Syt1 (ENSMUSG00000035864) #15	Brcc3dc (ENSMUSG00000112039)	Nav3 (ENSMUSG00000020181) #16	E2f7 (ENSMUSG00000020185) #17	Csrp2 (ENSMUSG00000020186) #18	Zdhhc17 (ENSMUSG00000035798) #19	Osbpl8 (ENSMUSG00000020189) #20	Bbs10 (ENSMUSG00000035759) #21	Nap1l1 (ENSMUSG00000058799) #22	Phlda1 (ENSMUSG00000020205) #23	Krr1 (ENSMUSG00000063334) #24	Glipr1 (ENSMUSG00000056888) #25	Glipr1l1 (ENSMUSG00000020213) #26	Glipr1l2 (ENSMUSG00000020214) #27	Glipr1l3 (ENSMUSG00000112611) ##26	Caps2 (ENSMUSG00000035694) #28	Kcnc2 (ENSMUSG00000035681) #29	Atxn7l3b (ENSMUSG00000074748) #30	Trhde (ENSMUSG00000050663) #32	Tph2 (ENSMUSG00000006764) #33	Tbc1d15 (ENSMUSG00000020130) #34	Rab21 (ENSMUSG00000020132) #35	Tmem19 (ENSMUSG00000069520) #36	Thap2 (ENSMUSG00000020137) #37
Ryukyu mouse	MODERN SPECIES	1	Acss3 (MGP_CAROLIEiJ_G0015783) #7	Lin7a (MGP_CAROLIEiJ_G0015784) #8	Myf5 (MGP_CAROLIEiJ_G0015785) #9	Myf6 (MGP_CAROLIEiJ_G0015786) #10	Ptprq (MGP_CAROLIEiJ_G0015787) #11	Otogl (MGP_CAROLIEiJ_G0015788) #12	Ppp1r12a (MGP_CAROLIEiJ_G0015789) #13	MGP_CAROLIEiJ_G0015790 #14	Syt1 (MGP_CAROLIEiJ_G0015791) #15	Nav3 (MGP_CAROLIEiJ_G0015792) #16	E2f7 (MGP_CAROLIEiJ_G0015793) #17	Csrp2 (MGP_CAROLIEiJ_G0015794) #18	Zdhhc17 (MGP_CAROLIEiJ_G0015795) #19	Osbpl8 (MGP_CAROLIEiJ_G0015796) #20	Bbs10 (MGP_CAROLIEiJ_G0015797) #21	Nap1l1 (MGP_CAROLIEiJ_G0015798) #22	Phlda1 (MGP_CAROLIEiJ_G0015799) #23	Krr1 (MGP_CAROLIEiJ_G0015800) #24	Glipr1 (MGP_CAROLIEiJ_G0015801) #25	Glipr1l2 (MGP_CAROLIEiJ_G0015802) #27	MGP_CAROLIEiJ_G0015803 #26	Caps2 (MGP_CAROLIEiJ_G0015804) #28	Kcnc2 (MGP_CAROLIEiJ_G0015805) #29	Atxn7l3b (MGP_CAROLIEiJ_G0015806) #30	MGP_CAROLIEiJ_G0015807 #31	Trhde (MGP_CAROLIEiJ_G0015808) #32	Tph2 (MGP_CAROLIEiJ_G0015809) #33	Tbc1d15 (MGP_CAROLIEiJ_G0015810) #34	Rab21 (MGP_CAROLIEiJ_G0015811) #35	Tmem19 (MGP_CAROLIEiJ_G0015812) #36	Thap2 (MGP_CAROLIEiJ_G0015813) #37
Shrew mouse	MODERN SPECIES	22	Acss3 (MGP_PahariEiJ_G0031304) #7	Lin7a (MGP_PahariEiJ_G0031303) #8	Myf5 (MGP_PahariEiJ_G0031302) #9	Myf6 (MGP_PahariEiJ_G0031301) #10	Ptprq (MGP_PahariEiJ_G0031300) #11	MGP_PahariEiJ_G0031299 #12	Ppp1r12a (MGP_PahariEiJ_G0031298) #13	Pawr (MGP_PahariEiJ_G0031297) #14	Syt1 (MGP_PahariEiJ_G0031296) #15	MGP_PahariEiJ_G0031295 #16	E2f7 (MGP_PahariEiJ_G0031294) #17	Csrp2 (MGP_PahariEiJ_G0031293) #18	Zdhhc17 (MGP_PahariEiJ_G0031292) #19	Osbpl8 (MGP_PahariEiJ_G0031291) #20	Bbs10 (MGP_PahariEiJ_G0031290) #21	MGP_PahariEiJ_G0031289 #22	Phlda1 (MGP_PahariEiJ_G0031288) #23	Krr1 (MGP_PahariEiJ_G0031287) #24	Glipr1 (MGP_PahariEiJ_G0031286) #25	Glipr1l2 (MGP_PahariEiJ_G0031285) #27	MGP_PahariEiJ_G0031284 #26	Caps2 (MGP_PahariEiJ_G0031283) #28	Kcnc2 (MGP_PahariEiJ_G0031282) #29	Atxn7l3b (MGP_PahariEiJ_G0031281) #30	MGP_PahariEiJ_G0031280	Trhde (MGP_PahariEiJ_G0031279) #32	Tph2 (MGP_PahariEiJ_G0031278) #33	Tbc1d15 (MGP_PahariEiJ_G0031277) #34	Rab21 (MGP_PahariEiJ_G0031276) #35	Tmem19 (MGP_PahariEiJ_G0031275) #36	Thap2 (MGP_PahariEiJ_G0031274) #37