Hystricomorpha	ANCESTRAL SPECIES	2	ENSGT00940000162592 #10	ENSGT01000000216607 #11	ENSGT00950000182932.A.b.b	ENSGT00910000144307 #12	ENSGT00850000133583 #14	ENSGT00390000006753.A #15	ENSGT00940000162254 #13	ENSGT00940000157149 #16	ENSGT00390000008732.a.a.b.a.b #17	ENSGT00940000162720.b.b	ENSGT00390000006710 #18	ENSGT00390000007165 #19	ENSGT00940000163150	ENSGT00940000162621 #20	ENSGT00940000161700 #21	ENSGT01030000234578.A.b.b #22	ENSGT00940000161254 #23	ENSGT00940000153909.a #24	ENSGT00390000009899.a.c #25	ENSGT00390000007101.d.a #26	ENSGT00940000162227 #27	ENSGT00940000161816 #28	ENSGT00390000002069 #29	ENSGT01030000234588.b.b.b.b.b #30	ENSGT00940000160609 #31	ENSGT00940000161425 #32	ENSGT00940000158125 #33	ENSGT00940000159641 #34	ENSGT01100000263478.b.a.b.a ##36	ENSGT00390000008006	ENSGT00950000183060.a.b.b.b
Hystricomorpha_a	ANCESTRAL SPECIES	33	ENSGT00940000162592 #10	ENSGT01000000216607 #11	ENSGT00950000182932.A.b.b	ENSGT00910000144307 #12	ENSGT00850000133583 #14	ENSGT00390000006753.A #15	ENSGT00940000162254 #13	ENSGT00940000157149 #16	ENSGT00390000008732.a.a.b.a.b #17	ENSGT00940000162720.b.b	ENSGT00390000006710 #18	ENSGT00390000007165 #19	ENSGT00940000163150	ENSGT00940000162621 #20	ENSGT00940000161700 #21	ENSGT01030000234578.A.b.b #22	ENSGT00940000161254 #23	ENSGT00940000153909.a #24	ENSGT00390000009899.a.c #25	ENSGT00390000007101.d.a #26	ENSGT00940000162227 #27	ENSGT00940000161816 #28	ENSGT00390000002069 #29	ENSGT01030000234588.b.b.b.b.b #30	ENSGT00940000160609 #31	ENSGT00940000161425 #32	ENSGT00940000158125 #33	ENSGT00940000159641 #34	ENSGT01100000263478.b.a.b.a ##36	ENSGT00390000008006	ENSGT00950000183060.a.b.b.b
Hystricomorpha_b	ANCESTRAL SPECIES	88	ENSGT00940000162592 #10	ENSGT01000000216607 #11	ENSGT00910000144307 #12	ENSGT00950000182932.A.b.b	ENSGT00850000133583 #14	ENSGT00390000006753.A #15	ENSGT00940000162254 #13	ENSGT00940000157149 #16	ENSGT00390000008732.a.a.b.a.b #17	ENSGT00390000008732.a.a.b.b ##17	ENSGT00390000006710 #18	ENSGT00390000007165 #19	ENSGT00940000163150	ENSGT00940000162621 #20	ENSGT00940000161700 #21	ENSGT01030000234578.A.b.b #22	ENSGT00940000161254 #23	ENSGT00940000153909.a #24	ENSGT00390000009899.a.c #25	ENSGT00390000007101.d.a #26	ENSGT00940000162227 #27	ENSGT00940000161816 #28	ENSGT00390000002069 #29	ENSGT01030000234588.b.b.b.b.b #30	ENSGT00940000160609 #31	ENSGT00940000161425 #32	ENSGT00940000158125 #33	ENSGT00940000159641 #34	ENSGT01100000263478.b.a.b.a ##36	ENSGT01100000263478.b.a.b.b.b.a.a.b.c.b.c ##36	ENSGT01100000263478.b.a.b.b.b.a.a.b.c.b.d.a.a ##36
Degu	MODERN SPECIES	361	ZNF579 (ENSODEG00000013209) #7	ENSODEG00000010550 #8	SBK2 (ENSODEG00000010236) #9	SSC5D (ENSODEG00000009970) #10	ENSODEG00000010952 #11	ZNF628 (ENSODEG00000009941) #12	SHISA7 (ENSODEG00000010663) #13	C19orf85 (ENSODEG00000011049) #14	ISOC2 (ENSODEG00000010105) #15	ENSODEG00000011615 #16	ENSODEG00000010391 #17	TMEM190 (ENSODEG00000009911) #18	IL11 (ENSODEG00000010163) #19	COX6B2 (ENSODEG00000010701) #20	KMT5C (ENSODEG00000010521) #21	TMEM150B (ENSODEG00000010863) #22	BRSK1 (ENSODEG00000014498) #23	HSPBP1 (ENSODEG00000010633) #24	ENSODEG00000011540 #25	TMEM86B (ENSODEG00000011909) #26	ENSODEG00000012643 #27	SYT5 (ENSODEG00000011988) #28	DNAAF3 (ENSODEG00000010996) #29	TNNI3 (ENSODEG00000011412) #30	TNNT1 (ENSODEG00000010639) #31	PPP1R12C (ENSODEG00000010142) #32	EPS8L1 (ENSODEG00000011275) #33	RDH13 (ENSODEG00000011963) #34	ENSODEG00000020005 #35	ENSODEG00000012519 #36
Long-tailed chinchilla	MODERN SPECIES	274	ENSCLAG00000000471	ENSCLAG00000000506 #8	SBK2 (ENSCLAG00000000598) #9	SSC5D (ENSCLAG00000000276) #10	ZNF628 (ENSCLAG00000000533) #12	NAT14 (ENSCLAG00000000540)	ISOC2 (ENSCLAG00000000572) #15	ENSCLAG00000000623 #13	UBE2S (ENSCLAG00000000649) #16	RPL28 (ENSCLAG00000000684) ##17	TMEM190 (ENSCLAG00000000703) #18	IL11 (ENSCLAG00000000724) #19	ENSCLAG00000000763	COX6B2 (ENSCLAG00000000892) #20	KMT5C (ENSCLAG00000000904) #21	TMEM150B (ENSCLAG00000000936) #22	BRSK1 (ENSCLAG00000000981) #23	HSPBP1 (ENSCLAG00000000510) #24	PPP6R1 (ENSCLAG00000000725) #25	TMEM86B (ENSCLAG00000000569) #26	ENSCLAG00000000594 #27	SYT5 (ENSCLAG00000000778) #28	DNAAF3 (ENSCLAG00000000382) #29	TNNI3 (ENSCLAG00000000516) #30	TNNT1 (ENSCLAG00000000706) #31	PPP1R12C (ENSCLAG00000000907) #32	EPS8L1 (ENSCLAG00000000411) #33	RDH13 (ENSCLAG00000001660) #34	ENSCLAG00000001076 ##36	ENSCLAG00000001196 ##36	ENSCLAG00000001529 ##36
Guinea pig	MODERN SPECIES	70				NAT14 (ENSCPOG00000004948)	ZNF628 (ENSCPOG00000036775) #12	C19orf85 (ENSCPOG00000036337) #14	ISOC2 (ENSCPOG00000014834) #15	SHISA7 (ENSCPOG00000036738) #13	UBE2S (ENSCPOG00000012837) #16	ENSCPOG00000012833 #17	TMEM238 (ENSCPOG00000019669)	TMEM190 (ENSCPOG00000015468) #18	IL11 (ENSCPOG00000009123) #19	COX6B2 (ENSCPOG00000009105) #20	KMT5C (ENSCPOG00000009102) #21	TMEM150B (ENSCPOG00000039123) #22	BRSK1 (ENSCPOG00000009088) #23	HSPBP1 (ENSCPOG00000030758) #24	PPP6R1 (ENSCPOG00000021924) #25	TMEM86B (ENSCPOG00000009709) #26	ENSCPOG00000026559 #27	SYT5 (ENSCPOG00000009084) #28	DNAAF3 (ENSCPOG00000009082) #29	TNNI3 (ENSCPOG00000020449) #30	TNNT1 (ENSCPOG00000022114) #31	PPP1R12C (ENSCPOG00000027133) #32	ENSCPOG00000006835 #33	RDH13 (ENSCPOG00000012153) #34	NCR1 (ENSCPOG00000001319) #36	ENSCPOG00000007412 ##36	ENSCPOG00000030847 ##36
Naked mole-rat female	MODERN SPECIES	21	ENSHGLG00000049682	ZNF524 (ENSHGLG00000042863)	FIZ1 (ENSHGLG00000049423)	ENSHGLG00000050249	ENSHGLG00000015309 #8	SBK2 (ENSHGLG00000035076) #9	ENSHGLG00000035277	NAT14 (ENSHGLG00000033788)	ISOC2 (ENSHGLG00000036834) #15	ENSHGLG00000034906 #16	RPL28 (ENSHGLG00000040310) ##17	TMEM238 (ENSHGLG00000042230)	IL11 (ENSHGLG00000039159) #19	COX6B2 (ENSHGLG00000043169) #20	KMT5C (ENSHGLG00000046126) #21	ENSHGLG00000014752 #22	ENSHGLG00000048831	ENSHGLG00000004906 #23	ENSHGLG00000040140 #23	ENSHGLG00000049528 #24	ENSHGLG00000043133 #25	ENSHGLG00000044106	ENSHGLG00000015452	ENSHGLG00000016036 #27	SYT5 (ENSHGLG00000015144) #28	ENSHGLG00000016420 #29	TNNI3 (ENSHGLG00000035434) #30	TNNT1 (ENSHGLG00000009790) #31	ENSHGLG00000047300 #32	ENSHGLG00000045855 #32	ENSHGLG00000009349 #33