Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT00390000014591	ENSGT00940000153571.a	ENSGT00950000183143.d	ENSGT00390000003413.o.a	ENSGT00390000007149	ENSGT00940000158363	ENSGT00390000002625	ENSGT00940000159752	ENSGT00940000162258	ENSGT00940000156066	ENSGT00890000139406.a	ENSGT00550000074797.b	ENSGT00940000160802	ENSGT00390000009142	ENSGT00390000003004	ENSGT00440000033742.a.b #22	ENSGT00390000007384 #23	ENSGT00390000016493 #24	ENSGT00390000012364 #26	ENSGT00940000153469.a.b #27	ENSGT00940000153469.a.a #28	ENSGT00390000010581 #29	ENSGT00940000156498 #30	ENSGT00830000128449 #31	ENSGT00940000155641 #32	ENSGT00940000158838 #33	ENSGT00390000005481 #34	ENSGT00730000111057 #35	ENSGT00530000063301.a.a #36	ENSGT00390000008812.b.b #37	ENSGT00940000157411
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT00390000014591	ENSGT00940000153571.a	ENSGT00950000183143.d	ENSGT00390000003413.o.a	ENSGT00390000007149	ENSGT00940000158363	ENSGT00390000002625	ENSGT00940000159752	ENSGT00940000162258	ENSGT00940000156066	ENSGT00890000139406.a	ENSGT00550000074797.b	ENSGT00940000160802	ENSGT00390000009142	ENSGT00390000003004	ENSGT00440000033742.a.b #22	ENSGT00390000007384 #23	ENSGT00390000016493 #24	ENSGT00390000012364 #26	ENSGT00940000153469.a.b #27	ENSGT00940000153469.a.a #28	ENSGT00390000010581 #29	ENSGT00940000156498 #30	ENSGT00830000128449 #31	ENSGT00940000155641 #32	ENSGT00940000158838 #33	ENSGT00390000005481 #34	ENSGT00730000111057 #35	ENSGT00530000063301.a.a #36	ENSGT00390000008812.b.b #37	ENSGT00940000157411
Guinea pig	MODERN SPECIES	32	MED31 (ENSCPOG00000040047) #7	TXNDC17 (ENSCPOG00000002887) #8	KIAA0753 (ENSCPOG00000002880) #9	PITPNM3 (ENSCPOG00000008431) #10	ENSCPOG00000037073 #11	AIPL1 (ENSCPOG00000039044) #12	WSCD1 (ENSCPOG00000005766) #13	ENSCPOG00000032418 #14	ENSCPOG00000005434 #15	ENSCPOG00000038411 #16	ENSCPOG00000032951 #17	ENSCPOG00000020619 #18	ENSCPOG00000040170 #19	OR4K2 (ENSCPOG00000030333) #20	OR4Q3 (ENSCPOG00000020338) #21	RAB11FIP4 (ENSCPOG00000011634) #22	COPRS (ENSCPOG00000006018) #23	UTP6 (ENSCPOG00000014294) #24	ENSCPOG00000034287 #25	SUZ12 (ENSCPOG00000024628) #26	CRLF3 (ENSCPOG00000008693) #27	ATAD5 (ENSCPOG00000011900) #28	TEFM (ENSCPOG00000011909) #29	ADAP2 (ENSCPOG00000004369) #30	RNF135 (ENSCPOG00000004880) #31	RHOT1 (ENSCPOG00000007927) #32	RHBDL3 (ENSCPOG00000022880) #33	C17orf75 (ENSCPOG00000013162) #34	ZNF207 (ENSCPOG00000001728) #35	PSMD11 (ENSCPOG00000009798) #36	CDK5R1 (ENSCPOG00000020676) #37
Hystricomorpha_b	ANCESTRAL SPECIES		ENSGT00390000014591	ENSGT00940000153571.a	ENSGT00950000183143.d	ENSGT00390000003413.o.a	ENSGT00390000007149	ENSGT00940000158363	ENSGT00390000002625	ENSGT00940000159752	ENSGT00940000162258	ENSGT00940000156066	ENSGT00890000139406.a	ENSGT00550000074797.b	ENSGT00940000160802	ENSGT00390000009142	ENSGT00390000003004	ENSGT00440000033742.a.b #22	ENSGT00390000007384 #23	ENSGT00390000016493 #24	ENSGT00390000012364 #26	ENSGT00940000153469.a.b #27	ENSGT00940000153469.a.a #28	ENSGT00390000010581 #29	ENSGT00940000156498 #30	ENSGT00830000128449 #31	ENSGT00940000155641 #32	ENSGT00940000158838 #33	ENSGT00390000005481 #34	ENSGT00730000111057 #35	ENSGT00530000063301.a.a #36	ENSGT00390000008812.b.b #37	ENSGT00940000157411
Long-tailed chinchilla	MODERN SPECIES	188	TMEM199 (ENSCLAG00000010426)	POLDIP2 (ENSCLAG00000010645)	TNFAIP1 (ENSCLAG00000010409)	IFT20 (ENSCLAG00000011729)	TMEM97 (ENSCLAG00000012393)	NLK (ENSCLAG00000004514)	LYRM9 (ENSCLAG00000005502)	NOS2 (ENSCLAG00000006015)	ENSCLAG00000004551	KSR1 (ENSCLAG00000005922)	WSB1 (ENSCLAG00000015275)	NF1 (ENSCLAG00000007006)	OMG (ENSCLAG00000012747)	EVI2B (ENSCLAG00000017819)	EVI2A (ENSCLAG00000013303)	RAB11FIP4 (ENSCLAG00000012724) #22	COPRS (ENSCLAG00000013385) #23	UTP6 (ENSCLAG00000007274) #24	SUZ12 (ENSCLAG00000008281) #26	CRLF3 (ENSCLAG00000009651) #27	ATAD5 (ENSCLAG00000009928) #28	TEFM (ENSCLAG00000006597) #29	ADAP2 (ENSCLAG00000005862) #30	ENSCLAG00000007154 #31	RHOT1 (ENSCLAG00000007856) #32	RHBDL3 (ENSCLAG00000008877) #33	C17orf75 (ENSCLAG00000007683) #34	ZNF207 (ENSCLAG00000006441) #35	PSMD11 (ENSCLAG00000009489) #36	CDK5R1 (ENSCLAG00000017838) #37	MYO1D (ENSCLAG00000009101)
Degu	MODERN SPECIES	113	ENSODEG00000015253	TMEM97 (ENSODEG00000016145)	NLK (ENSODEG00000012925)	ENSODEG00000010997	LYRM9 (ENSODEG00000013678)	NOS2 (ENSODEG00000011139)	ENSODEG00000011531	ENSODEG00000010909	ENSODEG00000010969	ENSODEG00000011692	ENSODEG00000019866	ENSODEG00000011722	NF1 (ENSODEG00000011949)	OMG (ENSODEG00000011985)	EVI2B (ENSODEG00000013035)	RAB11FIP4 (ENSODEG00000015676) #22	ENSODEG00000012209	COPRS (ENSODEG00000011871) #23	UTP6 (ENSODEG00000011971) #24	SUZ12 (ENSODEG00000013459) #26	ENSODEG00000013349 #27	ATAD5 (ENSODEG00000014008) #28	ADAP2 (ENSODEG00000011944) #30	ENSODEG00000013107 #31	RHOT1 (ENSODEG00000012674) #32	RHBDL3 (ENSODEG00000012800) #33	C17orf75 (ENSODEG00000012638) #34	ZNF207 (ENSODEG00000012683) #35	ENSODEG00000013615 #36	ENSODEG00000014487 #36	CDK5R1 (ENSODEG00000020159) #37
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	12	RASL10B (ENSHGLG00000038176)	ENSHGLG00000005151	ENSHGLG00000036876	ENSHGLG00000040978	ENSHGLG00000005292	ENSHGLG00000005395	ENSHGLG00000047538	ENSHGLG00000036900	ENSHGLG00000050713	CCL15 (ENSHGLG00000006092)	ENSHGLG00000006414	ENSHGLG00000036724	ENSHGLG00000007508	OMG (ENSHGLG00000038199)	EVI2B (ENSHGLG00000043351)	ENSHGLG00000009194 #22	COPRS (ENSHGLG00000009550) #23	ENSHGLG00000010332 #24	ENSHGLG00000010885 #26	ENSHGLG00000001028 #27	ENSHGLG00000032665	ENSHGLG00000049891	ENSHGLG00000007169	ENSHGLG00000045706	ENSHGLG00000004768	ENSHGLG00000020187	ENSHGLG00000009236	ENSHGLG00000008400	ENSHGLG00000010179	ENSHGLG00000018127	ENSHGLG00000041137
Naked mole-rat female	MODERN SPECIES	30	ENSHGLG00000039573	ENSHGLG00000011573	ENSHGLG00000012521	ENSHGLG00000046512	ADNP2 (ENSHGLG00000033188)	ENSHGLG00000042552	ENSHGLG00000032332	ENSHGLG00000038675	ENSHGLG00000037787	ENSHGLG00000034431	ENSHGLG00000035275	ENSHGLG00000038818	ENSHGLG00000036820	ENSHGLG00000003620	ENSHGLG00000038559	ENSHGLG00000050969 #22	ENSHGLG00000013763	S100A4 (ENSHGLG00000016459)	S100A3 (ENSHGLG00000033057)	ENSHGLG00000009571	S100A14 (ENSHGLG00000008860)	S100A1 (ENSHGLG00000044434)	CHTOP (ENSHGLG00000010389)	ENSHGLG00000042410	SNAPIN (ENSHGLG00000043471)	ILF2 (ENSHGLG00000004134)	NPR1 (ENSHGLG00000009046)	ENSHGLG00000041750	INTS3 (ENSHGLG00000008354)	ENSHGLG00000006919	ENSHGLG00000039078