Glires	ANCESTRAL SPECIES	3	ENSGT00950000183143.d #7	ENSGT00390000003413 #8	ENSGT00390000007149 #9	ENSGT00940000158363 #10	ENSGT00390000002625 #12	ENSGT00920000150741	ENSGT00940000159752 #13	ENSGT00940000162701	ENSGT00940000162258 #14	ENSGT00940000156066 #15	ENSGT00890000139406.a #16	ENSGT00550000074797.b #17	ENSGT00940000160802 #18	ENSGT00390000009142 #20	ENSGT00390000003004 #21	ENSGT00440000033742.a.b #22	ENSGT01000000215472	ENSGT00390000007384	ENSGT00390000016493 #23	ENSGT00390000012364 #24	ENSGT00940000153469.a.b #25	ENSGT00940000153469.a.a #26	ENSGT00390000010581 #27	ENSGT00940000156498 #28	ENSGT00830000128449	ENSGT00940000155641 #30	ENSGT00940000158838 #31	ENSGT00390000005481 #32	ENSGT00730000111057 #33	ENSGT00530000063301.a.a #34	ENSGT00390000008812.b.b #35
Rodentia	ANCESTRAL SPECIES	4	ENSGT00940000153571.a	ENSGT00950000183143.d #7	ENSGT00390000003413 #8	ENSGT00390000007149 #9	ENSGT00940000158363 #10	ENSGT00390000002625 #12	ENSGT00920000150741	ENSGT00940000159752 #13	ENSGT00940000162258 #14	ENSGT00940000156066 #15	ENSGT00890000139406.a #16	ENSGT00550000074797.b #17	ENSGT00940000160802 #18	ENSGT00390000009142 #20	ENSGT00390000003004 #21	ENSGT00440000033742.a.b #22	ENSGT01000000215472	ENSGT00390000007384	ENSGT00390000016493 #23	ENSGT00390000012364 #24	ENSGT00940000153469.a.b #25	ENSGT00940000153469.a.a #26	ENSGT00390000010581 #27	ENSGT00940000156498 #28	ENSGT00830000128449	ENSGT00940000155641 #30	ENSGT00940000158838 #31	ENSGT00390000005481 #32	ENSGT00730000111057 #33	ENSGT00530000063301.a.a #34	ENSGT00390000008812.b.b #35
Rodentia_B	ANCESTRAL SPECIES	1	ENSGT00940000153571.a	ENSGT00950000183143.d #7	ENSGT00390000003413 #8	ENSGT00390000007149 #9	ENSGT00940000158363 #10	ENSGT00390000002625 #12	ENSGT00920000150741	ENSGT00940000159752 #13	ENSGT00940000162258 #14	ENSGT00940000156066 #15	ENSGT00890000139406.a #16	ENSGT00940000160802 #18	ENSGT00390000009142 #20	ENSGT00390000003004 #21	ENSGT00550000074797.b #17	ENSGT00440000033742.a.b #22	ENSGT00390000016493 #23	ENSGT00390000012364 #24	ENSGT00940000153469.a.b #25	ENSGT00940000153469.a.a #26	ENSGT00390000010581 #27	ENSGT00940000156498 #28	ENSGT00830000128449	ENSGT00940000155641 #30	ENSGT00940000158838 #31	ENSGT00390000005481 #32	ENSGT00730000111057 #33	ENSGT00530000063301.a.a #34	ENSGT00390000008812.b.b #35	ENSGT00940000157411 #36	ENSGT00390000012062 #37
Myomorpha	ANCESTRAL SPECIES		ENSGT00950000183143.d #7	ENSGT00390000003413 #8	ENSGT00390000007149 #9	ENSGT00940000158363 #10	ENSGT00940000155445 #11	ENSGT00390000002625 #12	ENSGT00920000150741	ENSGT00940000159752 #13	ENSGT00940000162258 #14	ENSGT00940000156066 #15	ENSGT00890000139406.a #16	ENSGT00940000160802 #18	ENSGT00390000009142 #20	ENSGT00390000003004 #21	ENSGT00550000074797.b #17	ENSGT00440000033742.a.b #22	ENSGT00390000016493 #23	ENSGT00390000012364 #24	ENSGT00940000153469.a.b #25	ENSGT00940000153469.a.a #26	ENSGT00390000010581 #27	ENSGT00940000156498 #28	ENSGT00830000128449	ENSGT00940000155641 #30	ENSGT00940000158838 #31	ENSGT00390000005481 #32	ENSGT00730000111057 #33	ENSGT00530000063301.a.a #34	ENSGT00390000008812.b.b #35	ENSGT00940000157411 #36	ENSGT00390000012062 #37
Muroidea	ANCESTRAL SPECIES		ENSGT00950000183143.d #7	ENSGT00390000003413 #8	ENSGT00390000007149 #9	ENSGT00940000158363 #10	ENSGT00940000155445 #11	ENSGT00390000002625 #12	ENSGT00920000150741	ENSGT00940000159752 #13	ENSGT00940000162258 #14	ENSGT00940000156066 #15	ENSGT00890000139406.a #16	ENSGT00940000160802 #18	ENSGT00390000009142 #20	ENSGT00390000003004 #21	ENSGT00550000074797.b #17	ENSGT00440000033742.a.b #22	ENSGT00390000016493 #23	ENSGT00390000012364 #24	ENSGT00940000153469.a.b #25	ENSGT00940000153469.a.a #26	ENSGT00390000010581 #27	ENSGT00940000156498 #28	ENSGT00830000128449	ENSGT00940000155641 #30	ENSGT00940000158838 #31	ENSGT00390000005481 #32	ENSGT00730000111057 #33	ENSGT00530000063301.a.a #34	ENSGT00390000008812.b.b #35	ENSGT00940000157411 #36	ENSGT00390000012062 #37
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00950000183143.d #7	ENSGT00390000003413 #8	ENSGT00390000007149 #9	ENSGT00940000158363 #10	ENSGT00940000155445 #11	ENSGT00390000002625 #12	ENSGT00920000150741	ENSGT00940000159752 #13	ENSGT00940000162258 #14	ENSGT00940000156066 #15	ENSGT00890000139406.a #16	ENSGT00940000160802 #18	ENSGT00390000009142 #20	ENSGT00390000003004 #21	ENSGT00550000074797.b #17	ENSGT00440000033742.a.b #22	ENSGT00390000016493 #23	ENSGT00390000012364 #24	ENSGT00940000153469.a.b #25	ENSGT00940000153469.a.a #26	ENSGT00390000010581 #27	ENSGT00940000156498 #28	ENSGT00830000128449	ENSGT00940000155641 #30	ENSGT00940000158838 #31	ENSGT00390000005481 #32	ENSGT00730000111057 #33	ENSGT00530000063301.a.a #34	ENSGT00390000008812.b.b #35	ENSGT00940000157411 #36	ENSGT00390000012062 #37
Murinae	ANCESTRAL SPECIES	6	ENSGT00950000183143.d #7	ENSGT00390000003413 #8	ENSGT00390000007149 #9	ENSGT00940000158363 #10	ENSGT00940000155445 #11	ENSGT00390000002625 #12	ENSGT00920000150741	ENSGT00940000159752 #13	ENSGT00940000162258 #14	ENSGT00940000156066 #15	ENSGT00890000139406.a #16	ENSGT00940000160802 #18	ENSGT00390000009142 #20	ENSGT00390000003004 #21	ENSGT00550000074797.b #17	ENSGT00440000033742.a.b #22	ENSGT00390000016493 #23	ENSGT00390000012364 #24	ENSGT00940000153469.a.b #25	ENSGT00940000153469.a.a #26	ENSGT00390000010581 #27	ENSGT00940000156498 #28	ENSGT00940000164538 #29	ENSGT00940000155641 #30	ENSGT00940000158838 #31	ENSGT00390000005481 #32	ENSGT00730000111057 #33	ENSGT00530000063301.a.a #34	ENSGT00390000008812.b.b #35	ENSGT00940000157411 #36	ENSGT00390000012062 #37
Mus	ANCESTRAL SPECIES	2	ENSGT00950000183143.d #7	ENSGT00390000003413 #8	ENSGT00390000007149 #9	ENSGT00940000158363 #10	ENSGT00940000155445 #11	ENSGT00390000002625 #12	ENSGT00920000150741	ENSGT00940000159752 #13	ENSGT00940000162258 #14	ENSGT00940000156066 #15	ENSGT00890000139406.a #16	ENSGT00940000160802 #18	ENSGT00390000009142 #20	ENSGT00390000003004 #21	ENSGT00550000074797.b #17	ENSGT00440000033742.a.b #22	ENSGT00390000016493 #23	ENSGT00390000012364 #24	ENSGT00940000153469.a.b #25	ENSGT00940000153469.a.a #26	ENSGT00390000010581 #27	ENSGT00940000156498 #28	ENSGT00940000164538 #29	ENSGT00940000155641 #30	ENSGT00940000158838 #31	ENSGT00390000005481 #32	ENSGT00730000111057 #33	ENSGT00530000063301.a.a #34	ENSGT00390000008812.b.b #35	ENSGT00940000157411 #36	ENSGT00390000012062 #37
Shrew mouse	MODERN SPECIES	5	Tnfaip1 (MGP_PahariEiJ_G0017949) #7	Ift20 (MGP_PahariEiJ_G0017950) #8	MGP_PahariEiJ_G0017951 #9	Nlk (MGP_PahariEiJ_G0017952) #10	Ccnq (MGP_PahariEiJ_G0017953) #11	MGP_PahariEiJ_G0017954 #12	Nos2 (MGP_PahariEiJ_G0017955) #13	Lgals9 (MGP_PahariEiJ_G0017956) #14	Ksr1 (MGP_PahariEiJ_G0017957) #15	Wsb1 (MGP_PahariEiJ_G0017958) #16	MGP_PahariEiJ_G0017959 #17	Omg (MGP_PahariEiJ_G0017960) #18	MGP_PahariEiJ_G0017961 #19	MGP_PahariEiJ_G0017962 #20	Evi2a (MGP_PahariEiJ_G0017963) #21	Rab11fip4 (MGP_PahariEiJ_G0017964) #22	Utp6 (MGP_PahariEiJ_G0017965) #23	Suz12 (MGP_PahariEiJ_G0017966) #24	Crlf3 (MGP_PahariEiJ_G0017967) #25	Atad5 (MGP_PahariEiJ_G0017968) #26	Tefm (MGP_PahariEiJ_G0017969) #27	Adap2 (MGP_PahariEiJ_G0017970) #28	Rnf135 (MGP_PahariEiJ_G0017971) #29	Rhot1 (MGP_PahariEiJ_G0017972) #30	MGP_PahariEiJ_G0017973 #31	5730455P16Rik (MGP_PahariEiJ_G0017974) #32	Zfp207 (MGP_PahariEiJ_G0017975) #33	Psmd11 (MGP_PahariEiJ_G0017976) #34	Cdk5r1 (MGP_PahariEiJ_G0017977) #35	Myo1d (MGP_PahariEiJ_G0017978) #36	Tmem98 (MGP_PahariEiJ_G0017979) #37
Mus_A	ANCESTRAL SPECIES	2	ENSGT00950000183143.d #7	ENSGT00390000003413 #8	ENSGT00390000007149 #9	ENSGT00940000158363 #10	ENSGT00940000155445 #11	ENSGT00390000002625 #12	ENSGT00920000150741	ENSGT00940000159752 #13	ENSGT00940000162258 #14	ENSGT00940000156066 #15	ENSGT00890000139406.a #16	ENSGT00940000160802 #18	ENSGT00390000009142 #20	ENSGT00390000003004 #21	ENSGT00550000074797.b #17	ENSGT00440000033742.a.b #22	ENSGT00390000016493 #23	ENSGT00390000012364 #24	ENSGT00940000153469.a.b #25	ENSGT00940000153469.a.a #26	ENSGT00390000010581 #27	ENSGT00940000156498 #28	ENSGT00940000164538 #29	ENSGT00940000155641 #30	ENSGT00940000158838 #31	ENSGT00390000005481 #32	ENSGT00730000111057 #33	ENSGT00530000063301.a.a.q #34	ENSGT00390000008812.b.b #35	ENSGT00940000157411 #36	ENSGT00390000012062 #37
Mus_B	ANCESTRAL SPECIES	2	ENSGT00950000183143.d #7	ENSGT00390000003413 #8	ENSGT00390000007149 #9	ENSGT00940000158363 #10	ENSGT00940000155445 #11	ENSGT00390000002625 #12	ENSGT00920000150741	ENSGT00940000159752 #13	ENSGT00940000162258 #14	ENSGT00940000156066 #15	ENSGT00890000139406.a #16	ENSGT00940000160802 #18	ENSGT00390000009142 #20	ENSGT00390000003004 #21	ENSGT00550000074797.b #17	ENSGT00440000033742.a.b #22	ENSGT00390000016493 #23	ENSGT00390000012364 #24	ENSGT00940000153469.a.b #25	ENSGT00940000153469.a.a #26	ENSGT00390000010581 #27	ENSGT00940000156498 #28	ENSGT00940000164538 #29	ENSGT00940000155641 #30	ENSGT00940000158838 #31	ENSGT00390000005481 #32	ENSGT00730000111057 #33	ENSGT00530000063301.a.a.q #34	ENSGT00390000008812.b.b #35	ENSGT00940000157411 #36	ENSGT00390000012062 #37
Mouse	MODERN SPECIES	2	Poldip2 (ENSMUSG00000001100)	Tnfaip1 (ENSMUSG00000017615) #7	Ift20 (ENSMUSG00000001105) #8	Tmem97 (ENSMUSG00000037278) #9	Nlk (ENSMUSG00000017376) #10	Ccnq (ENSMUSG00000049489) #11	Lyrm9 (ENSMUSG00000072640) #12	Nos2 (ENSMUSG00000020826) #13	Lgals9 (ENSMUSG00000001123) #14	Ksr1 (ENSMUSG00000018334) #15	Wsb1 (ENSMUSG00000017677) #16	Nf1 (ENSMUSG00000020716) #17	Omg (ENSMUSG00000049612) #18	Evi2b (ENSMUSG00000093938) #20	Evi2a (ENSMUSG00000078771) #21	Rab11fip4 (ENSMUSG00000017639) #22	Utp6 (ENSMUSG00000035575) #23	Suz12 (ENSMUSG00000017548) #24	Crlf3 (ENSMUSG00000017561) #25	Atad5 (ENSMUSG00000017550) #26	Tefm (ENSMUSG00000046909) #27	Adap2 (ENSMUSG00000020709) #28	Rnf135 (ENSMUSG00000020707) #29	Rhot1 (ENSMUSG00000017686) #30	Rhbdl3 (ENSMUSG00000017692) #31	5730455P16Rik (ENSMUSG00000057181) #32	Zfp207 (ENSMUSG00000017421) #33	Psmd11 (ENSMUSG00000017428) #34	Cdk5r1 (ENSMUSG00000048895) #35	Myo1d (ENSMUSG00000035441) #36	Tmem98 (ENSMUSG00000035413) #37
Mus_C	ANCESTRAL SPECIES	3	ENSGT00950000183143.d #7	ENSGT00390000003413 #8	ENSGT00390000007149 #9	ENSGT00940000158363 #10	ENSGT00940000155445 #11	ENSGT00390000002625 #12	ENSGT00920000150741	ENSGT00940000159752 #13	ENSGT00940000162258 #14	ENSGT00940000156066 #15	ENSGT00890000139406.a #16	ENSGT00940000160802 #18	ENSGT00390000009142 #20	ENSGT00390000003004 #21	ENSGT00550000074797.b #17	ENSGT00440000033742.a.b #22	ENSGT00390000016493 #23	ENSGT00390000012364 #24	ENSGT00940000153469.a.b #25	ENSGT00940000153469.a.a #26	ENSGT00390000010581 #27	ENSGT00940000156498 #28	ENSGT00940000164538 #29	ENSGT00940000155641 #30	ENSGT00940000158838 #31	ENSGT00390000005481 #32	ENSGT00730000111057 #33	ENSGT00530000063301.a.a.q #34	ENSGT00390000008812.b.b #35	ENSGT00940000157411 #36	ENSGT00390000012062 #37
spretus	MODERN SPECIES	2	Ift20 (MGP_SPRETEiJ_G0017656) #8	Tmem97 (MGP_SPRETEiJ_G0017657) #9	Nlk (MGP_SPRETEiJ_G0017658) #10	Ccnq (MGP_SPRETEiJ_G0017659) #11	Lyrm9 (MGP_SPRETEiJ_G0017660) #12	Nos2 (MGP_SPRETEiJ_G0017661) #13	Lgals9 (MGP_SPRETEiJ_G0017662) #14	Ksr1 (MGP_SPRETEiJ_G0017663) #15	Wsb1 (MGP_SPRETEiJ_G0017664) #16	MGP_SPRETEiJ_G0017665	Nf1 (MGP_SPRETEiJ_G0017666) #17	Omg (MGP_SPRETEiJ_G0017667) #18	MGP_SPRETEiJ_G0017668 #20	MGP_SPRETEiJ_G0017669 #20	Evi2a (MGP_SPRETEiJ_G0017670) #21	Rab11fip4 (MGP_SPRETEiJ_G0017671) #22	Utp6 (MGP_SPRETEiJ_G0017672) #23	Suz12 (MGP_SPRETEiJ_G0017673) #24	Crlf3 (MGP_SPRETEiJ_G0017674) #25	Atad5 (MGP_SPRETEiJ_G0017675) #26	Tefm (MGP_SPRETEiJ_G0017676) #27	Adap2 (MGP_SPRETEiJ_G0017677) #28	Rnf135 (MGP_SPRETEiJ_G0017678) #29	Rhot1 (MGP_SPRETEiJ_G0017679) #30	Rhbdl3 (MGP_SPRETEiJ_G0017680) #31	5730455P16Rik (MGP_SPRETEiJ_G0017681) #32	Zfp207 (MGP_SPRETEiJ_G0017682) #33	Psmd11 (MGP_SPRETEiJ_G0017683) #34	Cdk5r1 (MGP_SPRETEiJ_G0017684) #35	Myo1d (MGP_SPRETEiJ_G0017685) #36	Tmem98 (MGP_SPRETEiJ_G0017686) #37
Steppe mouse	MODERN SPECIES	3351	ENSMSIG00000009862	Nlk (ENSMSIG00000009822) #10	ENSMSIG00000009812	Ccnq (ENSMSIG00000009802) #11	Lyrm9 (ENSMSIG00000009770) #12	ENSMSIG00000009763	Nos2 (ENSMSIG00000009679) #13	ENSMSIG00000009585 #14	Ksr1 (ENSMSIG00000009362) #15	Wsb1 (ENSMSIG00000009309) #16	ENSMSIG00000009302	Omg (ENSMSIG00000009281) #18	Evi2b (ENSMSIG00000009267) #20	Evi2a (ENSMSIG00000009262) #21	Nf1 (ENSMSIG00000008704) #17	Rab11fip4 (ENSMSIG00000008628) #22	ENSMSIG00000008597	Utp6 (ENSMSIG00000008510) #23	Suz12 (ENSMSIG00000008361) #24	Crlf3 (ENSMSIG00000008282) #25	Atad5 (ENSMSIG00000008129) #26	Tefm (ENSMSIG00000008088) #27	Adap2 (ENSMSIG00000008061) #28	Rnf135 (ENSMSIG00000008044) #29	Rhot1 (ENSMSIG00000007800) #30	Rhbdl3 (ENSMSIG00000007754) #31	5730455P16Rik (ENSMSIG00000007744) #32	Zfp207 (ENSMSIG00000007459) #33	Psmd11 (ENSMSIG00000007357) #34	Cdk5r1 (ENSMSIG00000007341) #35	ENSMSIG00000007320
Ryukyu mouse	MODERN SPECIES	2	Tnfaip1 (MGP_CAROLIEiJ_G0016812) #7	Ift20 (MGP_CAROLIEiJ_G0016813) #8	MGP_CAROLIEiJ_G0016814 #9	Nlk (MGP_CAROLIEiJ_G0016815) #10	Ccnq (MGP_CAROLIEiJ_G0016816) #11	MGP_CAROLIEiJ_G0016817 #12	Nos2 (MGP_CAROLIEiJ_G0016818) #13	Lgals9 (MGP_CAROLIEiJ_G0016819) #14	Ksr1 (MGP_CAROLIEiJ_G0016820) #15	Wsb1 (MGP_CAROLIEiJ_G0016821) #16	Nf1 (MGP_CAROLIEiJ_G0016822) #17	Omg (MGP_CAROLIEiJ_G0016823) #18	MGP_CAROLIEiJ_G0016824 #20	MGP_CAROLIEiJ_G0016825 #20	Evi2a (MGP_CAROLIEiJ_G0016826) #21	Rab11fip4 (MGP_CAROLIEiJ_G0016827) #22	Utp6 (MGP_CAROLIEiJ_G0016828) #23	Suz12 (MGP_CAROLIEiJ_G0016829) #24	Crlf3 (MGP_CAROLIEiJ_G0016830) #25	Atad5 (MGP_CAROLIEiJ_G0016831) #26	Tefm (MGP_CAROLIEiJ_G0016832) #27	Adap2 (MGP_CAROLIEiJ_G0016833) #28	Rnf135 (MGP_CAROLIEiJ_G0016834) #29	Rhot1 (MGP_CAROLIEiJ_G0016835) #30	Rhbdl3 (MGP_CAROLIEiJ_G0016836) #31	5730455P16Rik (MGP_CAROLIEiJ_G0016837) #32	Zfp207 (MGP_CAROLIEiJ_G0016838) #33	Psmd11 (MGP_CAROLIEiJ_G0016839) #34	Cdk5r1 (MGP_CAROLIEiJ_G0016840) #35	Myo1d (MGP_CAROLIEiJ_G0016841) #36	Tmem98 (MGP_CAROLIEiJ_G0016842) #37
Rat	MODERN SPECIES	1	Tnfaip1 (ENSRNOG00000009069) #7	Ift20 (ENSRNOG00000008891) #8	Tmem97 (ENSRNOG00000008704) #10	Ccnq (ENSRNOG00000022582) #11	Lyrm9 (ENSRNOG00000037204) #12	Nos2 (ENSRNOG00000057443) #13	Lgals5 (ENSRNOG00000012557) #14	Lgals9 (ENSRNOG00000012681) #14	Ksr1 (ENSRNOG00000012818) #15	AABR07030085.1 (ENSRNOG00000023182)	Wsb1 (ENSRNOG00000012929) #16	Nf1 (ENSRNOG00000013780) #17	Omg (ENSRNOG00000014107) #18	Evi2b (ENSRNOG00000014125) #20	Evi2a (ENSRNOG00000022764) #21	Rab11fip4 (ENSRNOG00000014135) #22	ENSRNOG00000069468	Utp6 (ENSRNOG00000014209) #23	LOC120095270 (ENSRNOG00000029115)	ENSRNOG00000069932	Suz12 (ENSRNOG00000058663) #24	Crlf3 (ENSRNOG00000050657) #25	Atad5 (ENSRNOG00000021903) #26	Tefm (ENSRNOG00000004000) #27	Adap2 (ENSRNOG00000037148) #28	Rhot1 (ENSRNOG00000004093) #30	Rhbdl3 (ENSRNOG00000005515) #31	RGD1310429 (ENSRNOG00000000237) #32	Psmd11 (ENSRNOG00000005538) #34	Cdk5r1 (ENSRNOG00000068243) #35	Myo1d (ENSRNOG00000003276) #36
Cricetidae	ANCESTRAL SPECIES		ENSGT00950000183143.d #7	ENSGT00390000003413 #8	ENSGT00390000007149 #9	ENSGT00940000158363 #10	ENSGT00940000155445 #11	ENSGT00390000002625 #12	ENSGT00920000150741	ENSGT00940000159752 #13	ENSGT00940000162258 #14	ENSGT00940000156066 #15	ENSGT00890000139406.a #16	ENSGT00940000160802 #18	ENSGT00390000009142 #20	ENSGT00390000003004 #21	ENSGT00550000074797.b #17	ENSGT00440000033742.a.b #22	ENSGT00390000016493 #23	ENSGT00390000012364 #24	ENSGT00940000153469.a.b #25	ENSGT00940000153469.a.a #26	ENSGT00390000010581 #27	ENSGT00940000156498 #28	ENSGT00830000128449	ENSGT00940000155641 #30	ENSGT00940000158838 #31	ENSGT00390000005481 #32	ENSGT00730000111057 #33	ENSGT00530000063301.a.a #34	ENSGT00390000008812.b.b #35	ENSGT00940000157411 #36	ENSGT00390000012062 #37
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00950000183143.d #7	ENSGT00390000003413 #8	ENSGT00390000007149 #9	ENSGT00940000158363 #10	ENSGT00940000155445 #11	ENSGT00390000002625 #12	ENSGT00920000150741	ENSGT00940000159752 #13	ENSGT00940000162258 #14	ENSGT00940000156066 #15	ENSGT00890000139406.a #16	ENSGT00550000074797.b #17	ENSGT00940000160802 #18	ENSGT00390000009142 #20	ENSGT00390000003004 #21	ENSGT00440000033742.a.b #22	ENSGT00390000016493 #23	ENSGT00390000012364 #24	ENSGT00940000153469.a.b #25	ENSGT00940000153469.a.a #26	ENSGT00390000010581 #27	ENSGT00940000156498 #28	ENSGT00830000128449	ENSGT00940000155641 #30	ENSGT00940000158838 #31	ENSGT00390000005481 #32	ENSGT00730000111057 #33	ENSGT00530000063301.a.a #34	ENSGT00390000008812.b.b #35	ENSGT00940000157411 #36	ENSGT00390000012062 #37
Northern American deer mouse	MODERN SPECIES	21	Ift20 (ENSPEMG00000005158) #8	Tmem97 (ENSPEMG00000029890) #9	Nlk (ENSPEMG00000028887) #10	Ccnq (ENSPEMG00000008814) #11	Lyrm9 (ENSPEMG00000010700) #12	ENSPEMG00000026563	Nos2 (ENSPEMG00000004104) #13	Lgals9 (ENSPEMG00000017761) #14	Ksr1 (ENSPEMG00000013255) #15	Wsb1 (ENSPEMG00000016763) #16	Nf1 (ENSPEMG00000015586) #17	ENSPEMG00000027432	Omg (ENSPEMG00000012789) #18	Evi2b (ENSPEMG00000011425) #20	Evi2a (ENSPEMG00000009997) #21	Rab11fip4 (ENSPEMG00000017840) #22	Utp6 (ENSPEMG00000014081) #23	Suz12 (ENSPEMG00000019235) #24	Crlf3 (ENSPEMG00000018811) #25	Atad5 (ENSPEMG00000012850) #26	Tefm (ENSPEMG00000016212) #27	Adap2 (ENSPEMG00000002187) #28	ENSPEMG00000018511	Rhot1 (ENSPEMG00000015998) #30	Rhbdl3 (ENSPEMG00000017609) #31	5730455P16Rik (ENSPEMG00000007661) #32	ENSPEMG00000031231	Zfp207 (ENSPEMG00000009110) #33	Psmd11 (ENSPEMG00000015029) #34	Cdk5r1 (ENSPEMG00000004672) #35	Myo1d (ENSPEMG00000021437) #36
Prairie vole	MODERN SPECIES	15	Tmem97 (ENSMOCG00000022041) #9	ENSMOCG00000001900	Nlk (ENSMOCG00000015184) #10	Ccnq (ENSMOCG00000002415) #11	Lyrm9 (ENSMOCG00000019807) #12	Nos2 (ENSMOCG00000010402) #13	Lgals9 (ENSMOCG00000022162) #14	Ksr1 (ENSMOCG00000007995) #15	ENSMOCG00000021867 #16	ENSMOCG00000008178 #16	ENSMOCG00000005083 #16	Omg (ENSMOCG00000008768) #18	Evi2b (ENSMOCG00000017970) #20	Evi2a (ENSMOCG00000003867) #21	Nf1 (ENSMOCG00000013672) #17	Rab11fip4 (ENSMOCG00000016866) #22	Utp6 (ENSMOCG00000014163) #23	Suz12 (ENSMOCG00000019023) #24	Crlf3 (ENSMOCG00000012869) #25	Atad5 (ENSMOCG00000003812) #26	Tefm (ENSMOCG00000000789) #27	Adap2 (ENSMOCG00000012833) #28	ENSMOCG00000008236	Rhot1 (ENSMOCG00000018397) #30	Rhbdl3 (ENSMOCG00000018973) #31	5730455P16Rik (ENSMOCG00000020781) #32	Zfp207 (ENSMOCG00000017262) #33	ENSMOCG00000010820 #34	ENSMOCG00000012529 #34	Cdk5r1 (ENSMOCG00000001690) #35	Myo1d (ENSMOCG00000018702) #36
Cricetinae	ANCESTRAL SPECIES		ENSGT00940000153571.a	ENSGT00950000183143.d #7	ENSGT00390000003413 #8	ENSGT00390000007149 #9	ENSGT00940000158363 #10	ENSGT00940000155445 #11	ENSGT00390000002625 #12	ENSGT00940000159752 #13	ENSGT00940000162258 #14	ENSGT00940000156066 #15	ENSGT00890000139406.a #16	ENSGT00940000160802 #18	ENSGT00390000009142 #20	ENSGT00390000003004 #21	ENSGT00550000074797.b #17	ENSGT00440000033742.a.b #22	ENSGT00390000016493 #23	ENSGT00390000012364 #24	ENSGT00940000153469.a.b #25	ENSGT00940000153469.a.a #26	ENSGT00390000010581 #27	ENSGT00940000156498 #28	ENSGT00830000128449	ENSGT00940000155641 #30	ENSGT00940000158838 #31	ENSGT00390000005481 #32	ENSGT00730000111057 #33	ENSGT00530000063301.a.a #34	ENSGT00390000008812.b.b #35	ENSGT00940000157411 #36	ENSGT00390000012062 #37
Golden Hamster	MODERN SPECIES	684	Poldip2 (ENSMAUG00000018090)	Tnfaip1 (ENSMAUG00000010529) #7	Ift20 (ENSMAUG00000017928) #8	Tmem97 (ENSMAUG00000016114) #9	Nlk (ENSMAUG00000017286) #10	Ccnq (ENSMAUG00000009944) #11	Lyrm9 (ENSMAUG00000011080) #12	Nos2 (ENSMAUG00000016350) #13	Lgals9 (ENSMAUG00000010512) #14	Ksr1 (ENSMAUG00000007581) #15	Wsb1 (ENSMAUG00000003418) #16	Omg (ENSMAUG00000000920) #18	Evi2b (ENSMAUG00000021786) #20	Evi2a (ENSMAUG00000011179) #21	Nf1 (ENSMAUG00000021534) #17	Rab11fip4 (ENSMAUG00000012204) #22	Utp6 (ENSMAUG00000021895) #23	Suz12 (ENSMAUG00000001677) #24	Crlf3 (ENSMAUG00000001238) #25	Atad5 (ENSMAUG00000019548) #26	Tefm (ENSMAUG00000006565) #27	Adap2 (ENSMAUG00000001797) #28	ENSMAUG00000022173	Rhot1 (ENSMAUG00000021776) #30	Rhbdl3 (ENSMAUG00000020013) #31	5730455P16Rik (ENSMAUG00000007002) #32	Zfp207 (ENSMAUG00000008892) #33	Psmd11 (ENSMAUG00000019073) #34	Cdk5r1 (ENSMAUG00000021140) #35	ENSMAUG00000009545	Myo1d (ENSMAUG00000013009) #36
Chinese hamster chok1gshd	MODERN SPECIES	374											ENSCGRG00001004794	Omg (ENSCGRG00001003552) #18	Evi2b (ENSCGRG00001002438) #20	Evi2a (ENSCGRG00001001421) #21	Nf1 (ENSCGRG00001015811) #17	Rab11fip4 (ENSCGRG00001011772) #22	Utp6 (ENSCGRG00001000046) #23	Suz12 (ENSCGRG00001012460) #24	ENSCGRG00001008689 #25	Atad5 (ENSCGRG00001015531) #26	Tefm (ENSCGRG00001014415) #27	Adap2 (ENSCGRG00001013794) #28	ENSCGRG00001013219	Rhot1 (ENSCGRG00001018128) #30	Rhbdl3 (ENSCGRG00001011616) #31	5730455P16Rik (ENSCGRG00001011069) #32	Zfp207 (ENSCGRG00001018133) #33	Psmd11 (ENSCGRG00001014740) #34	Cdk5r1 (ENSCGRG00001014057) #35	Myo1d (ENSCGRG00001020403) #36
Upper Galilee mountains blind mole rat	MODERN SPECIES	1773	Ift20 (ENSNGAG00000009753) #8	Tmem97 (ENSNGAG00000012768) #9	Nlk (ENSNGAG00000015020) #10	Ccnq (ENSNGAG00000014495) #11	Lyrm9 (ENSNGAG00000020149) #12	ENSNGAG00000000671	Nos2 (ENSNGAG00000014709) #13	ENSNGAG00000011827	Ksr1 (ENSNGAG00000016123) #15	Wsb1 (ENSNGAG00000020694) #16	Nf1 (ENSNGAG00000004292) #17	ENSNGAG00000017260	Omg (ENSNGAG00000018355) #18	Evi2b (ENSNGAG00000017449) #20	Evi2a (ENSNGAG00000020994) #21	Rab11fip4 (ENSNGAG00000001437) #22	Utp6 (ENSNGAG00000015482) #23	ENSNGAG00000013204	Suz12 (ENSNGAG00000019582) #24	Crlf3 (ENSNGAG00000009802) #25	Atad5 (ENSNGAG00000010738) #26	Tefm (ENSNGAG00000012952) #27	Adap2 (ENSNGAG00000020102) #28	ENSNGAG00000002228
Lesser Egyptian jerboa	MODERN SPECIES	112	Poldip2 (ENSJJAG00000016890)	ENSJJAG00000023956 #7	ENSJJAG00000023770 #8	ENSJJAG00000005855 #9	Nlk (ENSJJAG00000023496) #10	Ccnq (ENSJJAG00000014047) #11	Lyrm9 (ENSJJAG00000018903) #12	Nos2 (ENSJJAG00000008903) #13	ENSJJAG00000019969	ENSJJAG00000000471 #15	ENSJJAG00000022499 #15	ENSJJAG00000017336 #16	ENSJJAG00000024274 #16	Omg (ENSJJAG00000007985) #18	Nf1 (ENSJJAG00000013929) #17	Rab11fip4 (ENSJJAG00000019657) #22	Utp6 (ENSJJAG00000013572) #23	Suz12 (ENSJJAG00000018934) #24	Atad5 (ENSJJAG00000015228) #26	Adap2 (ENSJJAG00000015864) #28	ENSJJAG00000023784	Rhot1 (ENSJJAG00000010112) #30	Rhbdl3 (ENSJJAG00000010070) #31	ENSJJAG00000023980 #32	ENSJJAG00000017956	Psmd11 (ENSJJAG00000015236) #34	Cdk5r1 (ENSJJAG00000010662) #35	Myo1d (ENSJJAG00000015684) #36	Tmem98 (ENSJJAG00000017013) #37	Spaca3 (ENSJJAG00000023074)	ENSJJAG00000022033
Kangaroo rat	MODERN SPECIES	350	Poldip2 (ENSDORG00000002565)	Tnfaip1 (ENSDORG00000026438) #7	Ift20 (ENSDORG00000002562) #8	Tmem97 (ENSDORG00000026680) #9	Nlk (ENSDORG00000010252) #10	Lyrm9 (ENSDORG00000027328) #12	ENSDORG00000027415	Nos2 (ENSDORG00000000528) #13	ENSDORG00000026862	Ksr1 (ENSDORG00000012665) #15	Wsb1 (ENSDORG00000007448) #16	Omg (ENSDORG00000026854) #18	Evi2b (ENSDORG00000011472) #20	Evi2a (ENSDORG00000026168) #21	Nf1 (ENSDORG00000011467) #17	Rab11fip4 (ENSDORG00000011807) #22	Utp6 (ENSDORG00000003843) #23	Suz12 (ENSDORG00000000460) #24	Crlf3 (ENSDORG00000015909) #25	Atad5 (ENSDORG00000000344) #26	Tefm (ENSDORG00000000352) #27	Adap2 (ENSDORG00000006678) #28	ENSDORG00000025558	Rhot1 (ENSDORG00000001407) #30	Rhbdl3 (ENSDORG00000024743) #31	5730455P16Rik (ENSDORG00000007133) #32	Zfp207 (ENSDORG00000007139) #33	Psmd11 (ENSDORG00000011438) #34	Cdk5r1 (ENSDORG00000011445) #35	Myo1d (ENSDORG00000011446) #36	Tmem98 (ENSDORG00000026828) #37
Rodentia_A	ANCESTRAL SPECIES	3	ENSGT00950000183143.d #7	ENSGT00390000003413 #8	ENSGT00390000007149 #9	ENSGT00940000158363 #10	ENSGT00390000002625 #12	ENSGT00920000150741	ENSGT00940000159752 #13	ENSGT00940000162701	ENSGT00940000162258 #14	ENSGT00940000156066 #15	ENSGT00890000139406.a #16	ENSGT00550000074797.b #17	ENSGT00940000160802 #18	ENSGT00390000009142 #20	ENSGT00390000003004 #21	ENSGT00440000033742.a.b #22	ENSGT01000000215472	ENSGT00390000007384	ENSGT00390000016493 #23	ENSGT00390000012364 #24	ENSGT00940000153469.a.b #25	ENSGT00940000153469.a.a #26	ENSGT00390000010581 #27	ENSGT00940000156498 #28	ENSGT00830000128449	ENSGT00940000155641 #30	ENSGT00940000158838 #31	ENSGT00390000005481 #32	ENSGT00730000111057 #33	ENSGT00530000063301.a.a #34	ENSGT00390000008812.b.b #35
Sciuridae	ANCESTRAL SPECIES	4	ENSGT00940000153571.a	ENSGT00950000183143.d #7	ENSGT00390000003413 #8	ENSGT00390000007149 #9	ENSGT00940000158363.f #10	ENSGT00390000002625 #12	ENSGT00920000150741	ENSGT00940000159752 #13	ENSGT00940000162701	ENSGT00940000156066 #15	ENSGT00890000139406.a #16	ENSGT00550000074797.b #17	ENSGT00940000160802 #18	ENSGT00390000009142 #20	ENSGT00390000003004 #21	ENSGT00440000033742.a.b #22	ENSGT01000000215472	ENSGT00390000007384	ENSGT00390000016493 #23	ENSGT00390000012364 #24	ENSGT00940000153469.a.b #25	ENSGT00940000153469.a.a #26	ENSGT00390000010581 #27	ENSGT00940000156498 #28	ENSGT00830000128449	ENSGT00940000155641 #30	ENSGT00940000158838 #31	ENSGT00390000005481 #32	ENSGT00730000111057 #33	ENSGT00530000063301.a.a #34	ENSGT00390000008812.b.b #35
Marmotini	ANCESTRAL SPECIES	39	ENSGT00940000153571.a	ENSGT00950000183143.d #7	ENSGT00390000003413 #8	ENSGT00390000007149 #9	ENSGT00940000158363.f #10	ENSGT00390000002625 #12	ENSGT00920000150741	ENSGT00940000159752 #13	ENSGT00940000162701	ENSGT00940000156066 #15	ENSGT00890000139406.a #16	ENSGT00550000074797.b #17	ENSGT00940000160802 #18	ENSGT00390000009142 #20	ENSGT00390000003004 #21	ENSGT00440000033742.a.b #22	ENSGT01000000215472	ENSGT00390000007384	ENSGT00390000016493 #23	ENSGT00390000012364 #24	ENSGT00940000153469.a.b #25	ENSGT00940000153469.a.a #26	ENSGT00390000010581 #27	ENSGT00940000156498 #28	ENSGT00830000128449	ENSGT00940000155641 #30	ENSGT00940000158838 #31	ENSGT00390000005481 #32	ENSGT00730000111057 #33	ENSGT00530000063301.a.a #34	ENSGT00390000008812.b.b #35
Marmotini_b	ANCESTRAL SPECIES	34	ENSGT00940000153571.a	ENSGT00950000183143.d #7	ENSGT00390000003413 #8	ENSGT00390000007149 #9	ENSGT00940000158363.f #10	ENSGT00390000002625 #12	ENSGT00920000150741	ENSGT00940000159752 #13	ENSGT00940000162701	ENSGT00940000156066 #15	ENSGT00890000139406.a #16	ENSGT00550000074797.b #17	ENSGT00940000160802 #18	ENSGT00390000009142 #20	ENSGT00390000003004 #21	ENSGT00440000033742.a.b #22	ENSGT00390000007384	ENSGT00390000016493 #23	ENSGT00390000012364 #24	ENSGT00940000153469.a.b #25	ENSGT00940000153469.a.a #26	ENSGT00390000010581 #27	ENSGT00940000156498 #28	ENSGT00830000128449	ENSGT00940000155641 #30	ENSGT00940000158838 #31	ENSGT00390000005481 #32	ENSGT00730000111057.q #33	ENSGT00530000063301.a.a #34	ENSGT00390000008812.b.b #35	ENSGT00940000157411 #36
Arctic ground squirrel	MODERN SPECIES	63	POLDIP2 (ENSUPAG00010022381)	TNFAIP1 (ENSUPAG00010022382) #7	IFT20 (ENSUPAG00010022384) #8	ENSUPAG00010022386 #9	NLK (ENSUPAG00010022389) #10	LYRM9 (ENSUPAG00010022395) #12	ENSUPAG00010022396	NOS2 (ENSUPAG00010022398) #13	ENSUPAG00010022405	KSR1 (ENSUPAG00010022413) #15	WSB1 (ENSUPAG00010022420) #16	NF1 (ENSUPAG00010022435) #17	OMG (ENSUPAG00010022479) #18	EVI2B (ENSUPAG00010022480) #20	EVI2A (ENSUPAG00010022481) #21	RAB11FIP4 (ENSUPAG00010022484) #22	ENSUPAG00010022485	COPRS (ENSUPAG00010022492)	ENSUPAG00010022494 #23	SUZ12 (ENSUPAG00010022503) #24	CRLF3 (ENSUPAG00010022508) #25	ATAD5 (ENSUPAG00010022514) #26	TEFM (ENSUPAG00010022537) #27	ADAP2 (ENSUPAG00010022538) #28	RNF135 (ENSUPAG00010022541)	RHOT1 (ENSUPAG00010022548) #30	RHBDL3 (ENSUPAG00010023045) #31	C17orf75 (ENSUPAG00010023047) #32	ZNF207 (ENSUPAG00010023051) #33	PSMD11 (ENSUPAG00010023057) #34	CDK5R1 (ENSUPAG00010023059) #35
Squirrel	MODERN SPECIES	138	TMEM199 (ENSSTOG00000007600)	POLDIP2 (ENSSTOG00000007580)	TNFAIP1 (ENSSTOG00000007567) #7	ENSSTOG00000007554 #8	TMEM97 (ENSSTOG00000007542) #9	ENSSTOG00000020317	NLK (ENSSTOG00000007526) #10	LYRM9 (ENSSTOG00000027455) #12	NOS2 (ENSSTOG00000029171) #13	ENSSTOG00000016157	KSR1 (ENSSTOG00000021257) #15	WSB1 (ENSSTOG00000014704) #16	OMG (ENSSTOG00000005562) #18	EVI2B (ENSSTOG00000026274) #20	NF1 (ENSSTOG00000034066) #17	RAB11FIP4 (ENSSTOG00000010883) #22	COPRS (ENSSTOG00000025397)	UTP6 (ENSSTOG00000015875) #23	SUZ12 (ENSSTOG00000022754) #24	CRLF3 (ENSSTOG00000012342) #25	ATAD5 (ENSSTOG00000025411) #26	TEFM (ENSSTOG00000012367) #27	ADAP2 (ENSSTOG00000025811) #28	RNF135 (ENSSTOG00000027338)	RHOT1 (ENSSTOG00000011738) #30	RHBDL3 (ENSSTOG00000000698) #31	C17orf75 (ENSSTOG00000000705) #32	ENSSTOG00000000712 #33	PSMD11 (ENSSTOG00000009686) #34	CDK5R1 (ENSSTOG00000009703) #35	MYO1D (ENSSTOG00000000438) #36
Alpin marmot	MODERN SPECIES	71	TNFAIP1 (ENSMMMG00000012330) #7	IFT20 (ENSMMMG00000012345) #8	TMEM97 (ENSMMMG00000012352) #9	NLK (ENSMMMG00000012357) #10	LYRM9 (ENSMMMG00000012385) #12	ENSMMMG00000012388	NOS2 (ENSMMMG00000012395) #13	ENSMMMG00000012443	KSR1 (ENSMMMG00000012475) #15	WSB1 (ENSMMMG00000012581) #16	NF1 (ENSMMMG00000012603) #17	OMG (ENSMMMG00000012763) #18	EVI2B (ENSMMMG00000012769) #20	EVI2A (ENSMMMG00000012771) #21	ENSMMMG00000012772	RAB11FIP4 (ENSMMMG00000012781) #22	ENSMMMG00000012799	COPRS (ENSMMMG00000012825)	UTP6 (ENSMMMG00000012830) #23	SUZ12 (ENSMMMG00000012866) #24	CRLF3 (ENSMMMG00000012930) #25	TEFM (ENSMMMG00000012960) #27	ADAP2 (ENSMMMG00000012962) #28	RNF135 (ENSMMMG00000012984)	RHOT1 (ENSMMMG00000013006) #30	RHBDL3 (ENSMMMG00000013354) #31	C17orf75 (ENSMMMG00000013368) #32	ZNF207 (ENSMMMG00000013387) #33	PSMD11 (ENSMMMG00000013441) #34	CDK5R1 (ENSMMMG00000013447) #35	MYO1D (ENSMMMG00000013449) #36
Eurasian red squirrel	MODERN SPECIES	12	ENSSVLG00005023054 #8	TMEM97 (ENSSVLG00005023248) #9	ENSSVLG00005023284 #10	LYRM9 (ENSSVLG00005023321) #12	ENSSVLG00005010693	NOS2 (ENSSVLG00005010879) #13	ENSSVLG00005012114	KSR1 (ENSSVLG00005012302) #15	WSB1 (ENSSVLG00005012846) #16	ENSSVLG00005013027	NF1 (ENSSVLG00005013860) #17	ENSSVLG00005015232	OMG (ENSSVLG00005015267) #18	EVI2B (ENSSVLG00005015286) #20	EVI2A (ENSSVLG00005015311) #21	RAB11FIP4 (ENSSVLG00005015383) #22	COPRS (ENSSVLG00005015650)	UTP6 (ENSSVLG00005015715) #23	SUZ12 (ENSSVLG00005015781) #24	CRLF3 (ENSSVLG00005016089) #25	ATAD5 (ENSSVLG00005016127) #26	TEFM (ENSSVLG00005016323) #27	ADAP2 (ENSSVLG00005016368) #28	RNF135 (ENSSVLG00005016571)	RHOT1 (ENSSVLG00005016781) #30	RHBDL3 (ENSSVLG00005016946) #31	C17orf75 (ENSSVLG00005017088) #32	ZNF207 (ENSSVLG00005017171) #33	ENSSVLG00005017498 #34	CDK5R1 (ENSSVLG00005017534) #35	MYO1D (ENSSVLG00005017566) #36
Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT00390000014591	ENSGT00940000153571.a	ENSGT00950000183143.d #7	ENSGT00390000003413.o.a #8	ENSGT00390000007149 #9	ENSGT00940000158363 #10	ENSGT00390000002625 #12	ENSGT00940000159752 #13	ENSGT00940000162258 #14	ENSGT00940000156066 #15	ENSGT00890000139406.a #16	ENSGT00550000074797.b #17	ENSGT00940000160802 #18	ENSGT00390000009142 #20	ENSGT00390000003004 #21	ENSGT00440000033742.a.b #22	ENSGT00390000007384	ENSGT00390000016493 #23	ENSGT00390000012364 #24	ENSGT00940000153469.a.b #25	ENSGT00940000153469.a.a #26	ENSGT00390000010581 #27	ENSGT00940000156498 #28	ENSGT00830000128449	ENSGT00940000155641 #30	ENSGT00940000158838 #31	ENSGT00390000005481 #32	ENSGT00730000111057 #33	ENSGT00530000063301.a.a #34	ENSGT00390000008812.b.b #35	ENSGT00940000157411 #36
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT00390000014591	ENSGT00940000153571.a	ENSGT00950000183143.d #7	ENSGT00390000003413.o.a #8	ENSGT00390000007149 #9	ENSGT00940000158363 #10	ENSGT00390000002625 #12	ENSGT00940000159752 #13	ENSGT00940000162258 #14	ENSGT00940000156066 #15	ENSGT00890000139406.a #16	ENSGT00550000074797.b #17	ENSGT00940000160802 #18	ENSGT00390000009142 #20	ENSGT00390000003004 #21	ENSGT00440000033742.a.b #22	ENSGT00390000007384	ENSGT00390000016493 #23	ENSGT00390000012364 #24	ENSGT00940000153469.a.b #25	ENSGT00940000153469.a.a #26	ENSGT00390000010581 #27	ENSGT00940000156498 #28	ENSGT00830000128449	ENSGT00940000155641 #30	ENSGT00940000158838 #31	ENSGT00390000005481 #32	ENSGT00730000111057 #33	ENSGT00530000063301.a.a #34	ENSGT00390000008812.b.b #35	ENSGT00940000157411 #36
Hystricomorpha_b	ANCESTRAL SPECIES		ENSGT00390000014591	ENSGT00940000153571.a	ENSGT00950000183143.d #7	ENSGT00390000003413.o.a #8	ENSGT00390000007149 #9	ENSGT00940000158363 #10	ENSGT00390000002625 #12	ENSGT00940000159752 #13	ENSGT00940000162258 #14	ENSGT00940000156066 #15	ENSGT00890000139406.a #16	ENSGT00550000074797.b #17	ENSGT00940000160802 #18	ENSGT00390000009142 #20	ENSGT00390000003004 #21	ENSGT00440000033742.a.b #22	ENSGT00390000007384	ENSGT00390000016493 #23	ENSGT00390000012364 #24	ENSGT00940000153469.a.b #25	ENSGT00940000153469.a.a #26	ENSGT00390000010581 #27	ENSGT00940000156498 #28	ENSGT00830000128449	ENSGT00940000155641 #30	ENSGT00940000158838 #31	ENSGT00390000005481 #32	ENSGT00730000111057 #33	ENSGT00530000063301.a.a #34	ENSGT00390000008812.b.b #35	ENSGT00940000157411 #36
Long-tailed chinchilla	MODERN SPECIES	188	TMEM199 (ENSCLAG00000010426)	POLDIP2 (ENSCLAG00000010645)	TNFAIP1 (ENSCLAG00000010409) #7	IFT20 (ENSCLAG00000011729) #8	TMEM97 (ENSCLAG00000012393) #9	NLK (ENSCLAG00000004514) #10	LYRM9 (ENSCLAG00000005502) #12	NOS2 (ENSCLAG00000006015) #13	ENSCLAG00000004551 #14	KSR1 (ENSCLAG00000005922) #15	WSB1 (ENSCLAG00000015275) #16	NF1 (ENSCLAG00000007006) #17	OMG (ENSCLAG00000012747) #18	EVI2B (ENSCLAG00000017819) #20	EVI2A (ENSCLAG00000013303) #21	RAB11FIP4 (ENSCLAG00000012724) #22	COPRS (ENSCLAG00000013385)	UTP6 (ENSCLAG00000007274) #23	SUZ12 (ENSCLAG00000008281) #24	CRLF3 (ENSCLAG00000009651) #25	ATAD5 (ENSCLAG00000009928) #26	TEFM (ENSCLAG00000006597) #27	ADAP2 (ENSCLAG00000005862) #28	ENSCLAG00000007154	RHOT1 (ENSCLAG00000007856) #30	RHBDL3 (ENSCLAG00000008877) #31	C17orf75 (ENSCLAG00000007683) #32	ZNF207 (ENSCLAG00000006441) #33	PSMD11 (ENSCLAG00000009489) #34	CDK5R1 (ENSCLAG00000017838) #35	MYO1D (ENSCLAG00000009101) #36
Degu	MODERN SPECIES	113	ENSODEG00000015253 #8	TMEM97 (ENSODEG00000016145) #9	NLK (ENSODEG00000012925) #10	ENSODEG00000010997	LYRM9 (ENSODEG00000013678) #12	NOS2 (ENSODEG00000011139) #13	ENSODEG00000011531 #14	ENSODEG00000010909	ENSODEG00000010969 #15	ENSODEG00000011692 #15	ENSODEG00000019866	ENSODEG00000011722 #16	NF1 (ENSODEG00000011949) #17	OMG (ENSODEG00000011985) #18	EVI2B (ENSODEG00000013035) #20	RAB11FIP4 (ENSODEG00000015676) #22	ENSODEG00000012209	COPRS (ENSODEG00000011871)	UTP6 (ENSODEG00000011971) #23	SUZ12 (ENSODEG00000013459) #24	ENSODEG00000013349 #25	ATAD5 (ENSODEG00000014008) #26	ADAP2 (ENSODEG00000011944) #28	ENSODEG00000013107	RHOT1 (ENSODEG00000012674) #30	RHBDL3 (ENSODEG00000012800) #31	C17orf75 (ENSODEG00000012638) #32	ZNF207 (ENSODEG00000012683) #33	ENSODEG00000013615 #34	ENSODEG00000014487 #34	CDK5R1 (ENSODEG00000020159) #35
Guinea pig	MODERN SPECIES	32	MED31 (ENSCPOG00000040047)	TXNDC17 (ENSCPOG00000002887)	KIAA0753 (ENSCPOG00000002880)	PITPNM3 (ENSCPOG00000008431)	ENSCPOG00000037073	AIPL1 (ENSCPOG00000039044)	WSCD1 (ENSCPOG00000005766)	ENSCPOG00000032418	ENSCPOG00000005434	ENSCPOG00000038411	ENSCPOG00000032951	ENSCPOG00000020619	ENSCPOG00000040170	OR4K2 (ENSCPOG00000030333)	OR4Q3 (ENSCPOG00000020338)	RAB11FIP4 (ENSCPOG00000011634) #22	COPRS (ENSCPOG00000006018)	UTP6 (ENSCPOG00000014294) #23	ENSCPOG00000034287	SUZ12 (ENSCPOG00000024628) #24	CRLF3 (ENSCPOG00000008693) #25	ATAD5 (ENSCPOG00000011900) #26	TEFM (ENSCPOG00000011909) #27	ADAP2 (ENSCPOG00000004369) #28	RNF135 (ENSCPOG00000004880)	RHOT1 (ENSCPOG00000007927) #30	RHBDL3 (ENSCPOG00000022880) #31	C17orf75 (ENSCPOG00000013162) #32	ZNF207 (ENSCPOG00000001728) #33	PSMD11 (ENSCPOG00000009798) #34	CDK5R1 (ENSCPOG00000020676) #35
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	12	RASL10B (ENSHGLG00000038176)	ENSHGLG00000005151	ENSHGLG00000036876	ENSHGLG00000040978	ENSHGLG00000005292	ENSHGLG00000005395	ENSHGLG00000047538	ENSHGLG00000036900	ENSHGLG00000050713	CCL15 (ENSHGLG00000006092)	ENSHGLG00000006414	ENSHGLG00000036724	ENSHGLG00000007508 #17	OMG (ENSHGLG00000038199) #18	EVI2B (ENSHGLG00000043351) #20	ENSHGLG00000009194 #22	COPRS (ENSHGLG00000009550)	ENSHGLG00000010332 #23	ENSHGLG00000010885 #24	ENSHGLG00000001028 #25	ENSHGLG00000032665	ENSHGLG00000049891	ENSHGLG00000007169	ENSHGLG00000045706	ENSHGLG00000004768	ENSHGLG00000020187	ENSHGLG00000009236	ENSHGLG00000008400 #16	ENSHGLG00000010179 #15	ENSHGLG00000018127	ENSHGLG00000041137 #14
Naked mole-rat female	MODERN SPECIES	30	ENSHGLG00000039573	ENSHGLG00000011573	ENSHGLG00000012521	ENSHGLG00000046512	ADNP2 (ENSHGLG00000033188)	ENSHGLG00000042552	ENSHGLG00000032332	ENSHGLG00000038675	ENSHGLG00000037787	ENSHGLG00000034431	ENSHGLG00000035275	ENSHGLG00000038818	ENSHGLG00000036820	ENSHGLG00000003620	ENSHGLG00000038559	ENSHGLG00000050969 #22	ENSHGLG00000013763	S100A4 (ENSHGLG00000016459)	S100A3 (ENSHGLG00000033057)	ENSHGLG00000009571	S100A14 (ENSHGLG00000008860)	S100A1 (ENSHGLG00000044434)	CHTOP (ENSHGLG00000010389)	ENSHGLG00000042410	SNAPIN (ENSHGLG00000043471)	ILF2 (ENSHGLG00000004134)	NPR1 (ENSHGLG00000009046)	ENSHGLG00000041750	INTS3 (ENSHGLG00000008354)	ENSHGLG00000006919	ENSHGLG00000039078
Lagomorpha	ANCESTRAL SPECIES		ENSGT00940000153571.a	ENSGT00950000183143.d #7	ENSGT00390000003413 #8	ENSGT00390000007149 #9	ENSGT00940000158363 #10	ENSGT00960000190753	ENSGT00920000150741	ENSGT00940000159752 #13	ENSGT00940000162701	ENSGT00940000156066 #15	ENSGT00890000139406.a #16	ENSGT00550000074797.b #17	ENSGT00940000160802 #18	ENSGT00390000009142 #20	ENSGT00390000003004 #21	ENSGT00440000033742.a.b #22	ENSGT00390000007384	ENSGT00390000016493 #23	ENSGT00390000012364 #24	ENSGT00940000153469.a.b #25	ENSGT00940000153469.a.a #26	ENSGT00390000010581 #27	ENSGT00940000156498 #28	ENSGT00830000128449	ENSGT00940000155641 #30	ENSGT00940000158838 #31	ENSGT00390000005481 #32	ENSGT00730000111057 #33	ENSGT00530000063301.a.a #34	ENSGT00940000157411 #36	ENSGT00390000012062 #37
Pika	MODERN SPECIES	8052																RAB11FIP4 (ENSOPRG00000015580) #22
Rabbit	MODERN SPECIES	10	POLDIP2 (ENSOCUG00000007781)	TNFAIP1 (ENSOCUG00000007774) #7	IFT20 (ENSOCUG00000007773) #8	TMEM97 (ENSOCUG00000007769) #9	NLK (ENSOCUG00000007764) #10	ENSOCUG00000026676	ENSOCUG00000032921	NOS2 (ENSOCUG00000001903) #13	ENSOCUG00000025803	KSR1 (ENSOCUG00000007048) #15	WSB1 (ENSOCUG00000004643) #16	NF1 (ENSOCUG00000008567) #17	OMG (ENSOCUG00000008593) #18	EVI2B (ENSOCUG00000008595) #20	EVI2A (ENSOCUG00000008603) #21	RAB11FIP4 (ENSOCUG00000007443) #22	COPRS (ENSOCUG00000015488)	UTP6 (ENSOCUG00000016980) #23	SUZ12 (ENSOCUG00000002536) #24	CRLF3 (ENSOCUG00000002764) #25	ATAD5 (ENSOCUG00000015229) #26	TEFM (ENSOCUG00000015262) #27	ADAP2 (ENSOCUG00000015269) #28	ENSOCUG00000008741	RHOT1 (ENSOCUG00000012506) #30	RHBDL3 (ENSOCUG00000008179) #31	C17orf75 (ENSOCUG00000008187) #32	ZNF207 (ENSOCUG00000008195) #33	PSMD11 (ENSOCUG00000008495) #34	MYO1D (ENSOCUG00000008513) #36	TMEM98 (ENSOCUG00000009595) #37