Euteleostomi	ANCESTRAL SPECIES		ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.b ##20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00980000201267	ENSGT00940000177623	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00940000174987	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT01030000234945	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00940000159709	ENSGT00940000156247	ENSGT01030000235076	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000162201
Sarcopterygii	ANCESTRAL SPECIES	2	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.b ##20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT01030000234945	ENSGT00940000174987	ENSGT00390000015965 #24	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000170408	ENSGT00940000153648.b	ENSGT00940000159709	ENSGT00940000156247	ENSGT01030000235076	ENSGT00940000157949	ENSGT00940000157456
Tetrapoda	ANCESTRAL SPECIES	3	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.b ##20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00980000201267	ENSGT00940000177623	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00940000174987	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT01030000234945	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00940000159709	ENSGT00940000156247	ENSGT01030000235076	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000162201
Amniota	ANCESTRAL SPECIES	2	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.b ##20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00980000201267	ENSGT00940000177623	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00940000174987	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT01030000234945	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000165320	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT01030000235076	ENSGT00940000157949
Mammalia	ANCESTRAL SPECIES	1	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00940000174987	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT01030000234945	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000165320	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT01030000235076	ENSGT00940000157949
Theria	ANCESTRAL SPECIES	6	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00940000174987	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT01030000234945	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000165320	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT01030000235076	ENSGT00940000157949
Eutheria	ANCESTRAL SPECIES	2	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00940000174987	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT01030000234945	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000165320	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT01030000235076	ENSGT00940000157949
Boreoeutheria	ANCESTRAL SPECIES	8	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00940000174987	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00860000135660	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000165320	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT01030000235076	ENSGT00940000169973
Euarchontoglires	ANCESTRAL SPECIES	9	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00940000174987	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00860000135660	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT01030000235076	ENSGT00940000157949	ENSGT00900000143434
Primates	ANCESTRAL SPECIES	10	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00940000174987	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00860000135660	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT01030000235076	ENSGT00940000157949	ENSGT00900000143434
Strepsirrhini	ANCESTRAL SPECIES	46	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25
Bushbaby	MODERN SPECIES	184	ENSOGAG00000034271 #7	GBA3 (ENSOGAG00000004907) #8	PPARGC1A (ENSOGAG00000014559) #9	ENSOGAG00000007593 #10	ENSOGAG00000029820 #11	CCDC149 (ENSOGAG00000007602) #12	LGI2 (ENSOGAG00000025923) #13	SEPSECS (ENSOGAG00000008524) #14	ENSOGAG00000033259 #15	ENSOGAG00000024400 #16	PI4K2B (ENSOGAG00000029591) #17	ZCCHC4 (ENSOGAG00000002064) #18	ANAPC4 (ENSOGAG00000002068) #19	SLC34A2 (ENSOGAG00000006413) #20	SEL1L3 (ENSOGAG00000006417) #21	RBPJ (ENSOGAG00000007913) #22	CCKAR (ENSOGAG00000028711) #23	TBC1D19 (ENSOGAG00000008054) #24	STIM2 (ENSOGAG00000001870) #25
Lemuriformes	ANCESTRAL SPECIES	62	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25
Mouse lemur	MODERN SPECIES	26	ADGRA3 (ENSMICG00000003022)	GBA3 (ENSMICG00000017466) #8	PPARGC1A (ENSMICG00000015390) #9	ENSMICG00000045337	DHX15 (ENSMICG00000015414) #10	CCDC149 (ENSMICG00000017475) #12	LGI2 (ENSMICG00000002206) #13	SEPSECS (ENSMICG00000028863) #14	PI4K2B (ENSMICG00000017176) #17	ZCCHC4 (ENSMICG00000017179) #18	ANAPC4 (ENSMICG00000017188) #19	ENSMICG00000033125	SLC34A2 (ENSMICG00000045359) #20	SEL1L3 (ENSMICG00000017216) #21	SMIM20 (ENSMICG00000017222)	RBPJ (ENSMICG00000016014) #22	CCKAR (ENSMICG00000016023) #23	TBC1D19 (ENSMICG00000015879) #24	STIM2 (ENSMICG00000005093) #25	ENSMICG00000032983	PCDH7 (ENSMICG00000028654)	ENSMICG00000029850	ENSMICG00000034379	ENSMICG00000048142	ENSMICG00000030890	ARAP2 (ENSMICG00000016496)	DTHD1 (ENSMICG00000016515)	ENSMICG00000042181	ENSMICG00000046422	ENSMICG00000037614	NWD2 (ENSMICG00000015234)
Lemuriformes_a	ANCESTRAL SPECIES	192	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25
Greater bamboo lemur	MODERN SPECIES	645															SEL1L3 (ENSPSMG00000004418) #21	RBPJ (ENSPSMG00000004547) #22	CCKAR (ENSPSMG00000004592) #23	TBC1D19 (ENSPSMG00000004674) #24	STIM2 (ENSPSMG00000004771) #25
Coquerels sifaka	MODERN SPECIES	979		ADGRA3 (ENSPCOG00000026249)	ENSPCOG00000013452 #8	PPARGC1A (ENSPCOG00000022858) #9	ENSPCOG00000019130	DHX15 (ENSPCOG00000016858) #10	CCDC149 (ENSPCOG00000021677) #12	LGI2 (ENSPCOG00000019962) #13	SEPSECS (ENSPCOG00000027479) #14	PI4K2B (ENSPCOG00000025453) #17	ZCCHC4 (ENSPCOG00000019530) #18	ANAPC4 (ENSPCOG00000019322) #19	SLC34A2 (ENSPCOG00000001661) #20	SEL1L3 (ENSPCOG00000008204) #21	SMIM20 (ENSPCOG00000020751)	RBPJ (ENSPCOG00000014943) #22	CCKAR (ENSPCOG00000022459) #23	TBC1D19 (ENSPCOG00000027578) #24	ENSPCOG00000015580 #25
Haplorrhini	ANCESTRAL SPECIES	23	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00940000174987	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00860000135660	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT01030000235076	ENSGT00940000157949	ENSGT00900000143434
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	7054																ENSTSYG00000027783 #22	MAGI1 (ENSTSYG00000007911)	SLC25A26 (ENSTSYG00000032957)	LRIG1 (ENSTSYG00000011778)	KBTBD8 (ENSTSYG00000000350)	ENSTSYG00000002336
Tarsier	MODERN SPECIES	3892																RBPJ (ENSTSYG00000001894) #22	CCKAR (ENSTSYG00000028993) #23
Simiiformes	ANCESTRAL SPECIES	10	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00940000174987	ENSGT00390000015965 #24	ENSGT00390000008128.c.a.b	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00860000135660	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00900000143434
Platyrrhini	ANCESTRAL SPECIES	5	ENSGT00940000158985.c	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000008128.c.a.b	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00860000135660	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247.e	ENSGT00390000009693.p.b	ENSGT00940000157949	ENSGT00900000143434
Mas night monkey	MODERN SPECIES	1274	PACRGL (ENSANAG00000026655)	KCNIP4 (ENSANAG00000020849)	ADGRA3 (ENSANAG00000029226)	GBA3 (ENSANAG00000033499) #8	PPARGC1A (ENSANAG00000035930) #9	DHX15 (ENSANAG00000020669) #10	CCDC149 (ENSANAG00000029354) #12	LGI2 (ENSANAG00000027724) #13	SEPSECS (ENSANAG00000035197) #14	PI4K2B (ENSANAG00000030238) #17	ZCCHC4 (ENSANAG00000034646) #18	ANAPC4 (ENSANAG00000028966) #19	SLC34A2 (ENSANAG00000020569) #20	SEL1L3 (ENSANAG00000035152) #21	SMIM20 (ENSANAG00000027622)	RBPJ (ENSANAG00000028890) #22	CCKAR (ENSANAG00000033444) #23	TBC1D19 (ENSANAG00000034488) #24	STIM2 (ENSANAG00000030101) #25	ENSANAG00000021496
Cebidae	ANCESTRAL SPECIES	4	ENSGT00940000158985.c	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00860000135660	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247.e	ENSGT00390000009693.p.b	ENSGT00940000157949	ENSGT00900000143434	ENSGT00940000157456
Marmoset	MODERN SPECIES	15	ENSCJAG00000083951	PPARGC1A (ENSCJAG00000013024) #9	DHX15 (ENSCJAG00000013069) #10	ENSCJAG00000087251	SOD3 (ENSCJAG00000013121)	CCDC149 (ENSCJAG00000013127) #12	LGI2 (ENSCJAG00000042679) #13	SEPSECS (ENSCJAG00000013178) #14	ANAPC4 (ENSCJAG00000013271) #19	ENSCJAG00000084062	SLC34A2 (ENSCJAG00000013366) #20	SEL1L3 (ENSCJAG00000021061) #21	SMIM20 (ENSCJAG00000081638)	ENSCJAG00000063163	ENSCJAG00000086596	RBPJ (ENSCJAG00000021033) #22	CCKAR (ENSCJAG00000083281) #23	TBC1D19 (ENSCJAG00000021004) #24	ENSCJAG00000067085	STIM2 (ENSCJAG00000020997) #25	PCDH7 (ENSCJAG00000020994)	ENSCJAG00000085279	ENSCJAG00000075802	ENSCJAG00000082827	ENSCJAG00000070181	ENSCJAG00000078636	ARAP2 (ENSCJAG00000020975)	DTHD1 (ENSCJAG00000020974)	ENSCJAG00000081599	NWD2 (ENSCJAG00000020972)	C4orf19 (ENSCJAG00000020970)
Cebidae_a	ANCESTRAL SPECIES	34	ENSGT00940000158985.c	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00860000135660	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247.e	ENSGT00390000009693.p.b	ENSGT00940000157949	ENSGT00900000143434	ENSGT00940000157456
Bolivian squirrel monkey	MODERN SPECIES	65	ADGRA3 (ENSSBOG00000006417)	GBA3 (ENSSBOG00000032739) #8	PPARGC1A (ENSSBOG00000006423) #9	DHX15 (ENSSBOG00000022126) #10	ENSSBOG00000030054	SOD3 (ENSSBOG00000003134)	CCDC149 (ENSSBOG00000034478) #12	LGI2 (ENSSBOG00000033943) #13	SEPSECS (ENSSBOG00000023218) #14	PI4K2B (ENSSBOG00000030108) #17	ZCCHC4 (ENSSBOG00000020855) #18	ANAPC4 (ENSSBOG00000025712) #19	SLC34A2 (ENSSBOG00000023680) #20	SEL1L3 (ENSSBOG00000031484) #21	ENSSBOG00000022950	RBPJ (ENSSBOG00000024531) #22	CCKAR (ENSSBOG00000028673) #23	TBC1D19 (ENSSBOG00000030316) #24	STIM2 (ENSSBOG00000030023) #25	PCDH7 (ENSSBOG00000011267)	ENSSBOG00000030688	ARAP2 (ENSSBOG00000023662)	DTHD1 (ENSSBOG00000034010)	NWD2 (ENSSBOG00000028289)	C4orf19 (ENSSBOG00000034925)	RELL1 (ENSSBOG00000022983)	PGM2 (ENSSBOG00000025985)	TBC1D1 (ENSSBOG00000035438)	ENSSBOG00000033413	KLF3 (ENSSBOG00000005401)	FAM114A1 (ENSSBOG00000025532)
Capuchin	MODERN SPECIES	333														SEL1L3 (ENSCCAG00000028947) #21	SMIM20 (ENSCCAG00000037080)	RBPJ (ENSCCAG00000032952) #22	CCKAR (ENSCCAG00000020355) #23	TBC1D19 (ENSCCAG00000021726) #24	STIM2 (ENSCCAG00000021839) #25
Catarrhini	ANCESTRAL SPECIES	14	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00940000174987	ENSGT00390000015965 #24	ENSGT00390000008128.c.a.b	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT01030000234945	ENSGT00910000147204	ENSGT00860000135660	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247
Cercopithecidae	ANCESTRAL SPECIES	10	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000008128.c.a.b	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT01030000234945	ENSGT00910000147204	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00390000009693.m.b
Cercopithecinae	ANCESTRAL SPECIES	14	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000008128.c.a.b.a	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT01030000234945	ENSGT00910000147204	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00390000009693.m.b
Vervet Monkey	MODERN SPECIES	19	KCNIP4 (ENSCSAG00000016556)	ADGRA3 (ENSCSAG00000016562)	GBA3 (ENSCSAG00000016567) #8	PPARGC1A (ENSCSAG00000016575) #9	DHX15 (ENSCSAG00000016601) #10	SOD3 (ENSCSAG00000019694)	CCDC149 (ENSCSAG00000016607) #12	LGI2 (ENSCSAG00000016614) #13	SEPSECS (ENSCSAG00000016622) #14	PI4K2B (ENSCSAG00000016627) #17	ZCCHC4 (ENSCSAG00000016633) #18	ANAPC4 (ENSCSAG00000016642) #19	SLC34A2 (ENSCSAG00000016651) #20	SEL1L3 (ENSCSAG00000016666) #21	ENSCSAG00000016669	RBPJ (ENSCSAG00000016678) #22	CCKAR (ENSCSAG00000016683) #23	TBC1D19 (ENSCSAG00000016710) #24	ENSCSAG00000016720	STIM2 (ENSCSAG00000016726) #25	ENSCSAG00000016727	PCDH7 (ENSCSAG00000016736)	ENSCSAG00000016748	ARAP2 (ENSCSAG00000016819)	DTHD1 (ENSCSAG00000016834)	NWD2 (ENSCSAG00000016836)	C4orf19 (ENSCSAG00000016838)	RELL1 (ENSCSAG00000016840)	PGM2 (ENSCSAG00000016846)	TBC1D1 (ENSCSAG00000016865)	KLF3 (ENSCSAG00000016868)
Cercopithecinae_a	ANCESTRAL SPECIES	13	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398.i.a	ENSGT00390000014814.a.b.a.b.b	ENSGT00390000002398.j	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000008128.c.a.b.a	ENSGT00390000000214.a.b #25	ENSGT00390000013931.a.b.b.`b.b	ENSGT00940000157221	ENSGT01030000234945	ENSGT00910000147204	ENSGT00910000147191	ENSGT00860000135660	ENSGT00940000164947	ENSGT00390000014092.k.a	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000170408
Macaca	ANCESTRAL SPECIES	25	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398.i.a	ENSGT00390000014814.a.b.a.b.b	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000008128.c.a.b.a	ENSGT00390000000214.a.b #25	ENSGT00390000013931.a.b.b.`b.b	ENSGT01030000234945	ENSGT00940000157221	ENSGT00910000147204	ENSGT00910000147191	ENSGT00940000164947	ENSGT00390000014092.k.a	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00950000183010.a.a.a.b.a.a.a.a.b.a	ENSGT00940000153648.b
Pig-tailed macaque	MODERN SPECIES	141	GBA3 (ENSMNEG00000038431) #8	PPARGC1A (ENSMNEG00000028682) #9	ENSMNEG00000013564	DHX15 (ENSMNEG00000035145) #10	ENSMNEG00000005920	CCDC149 (ENSMNEG00000034296) #12	LGI2 (ENSMNEG00000015411) #13	SEPSECS (ENSMNEG00000041117) #14	PI4K2B (ENSMNEG00000010678) #17	ZCCHC4 (ENSMNEG00000027221) #18	ANAPC4 (ENSMNEG00000044256) #19	SLC34A2 (ENSMNEG00000033278) #20	SEL1L3 (ENSMNEG00000044018) #21	ENSMNEG00000045287	ENSMNEG00000027453	RBPJ (ENSMNEG00000037915) #22	CCKAR (ENSMNEG00000038424) #23	TBC1D19 (ENSMNEG00000031445) #24	ENSMNEG00000032694	STIM2 (ENSMNEG00000032563) #25	ENSMNEG00000029234	ENSMNEG00000038617	ENSMNEG00000034187	PCDH7 (ENSMNEG00000044686)	ENSMNEG00000008266	ENSMNEG00000010411	ENSMNEG00000034911	ENSMNEG00000019076	ARAP2 (ENSMNEG00000033019)	DTHD1 (ENSMNEG00000045184)	ENSMNEG00000043393
Macaca_a	ANCESTRAL SPECIES	12	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00940000161627.a.a.a.a.b.a.a.b.a.a.a.a.a.a.a.a.a.b.a.b.b.a	ENSGT01100000263493.a.b.a.a.b.a.a.b.b.b.a.b.a.a.a.a.a.b	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398.i.a	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000164709.a.b.b.a.a.b.b.b.b.a.b.a.c.b	ENSGT00940000157221	ENSGT01100000263493.a.a.a.b.a.a.b.a.b.a.a.a.a.b.b.a.b.b	ENSGT00940000164947	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT01100000263493.a.b.a.a.a.b.b.b.b.c.a	ENSGT01030000235076
Rhesus	MODERN SPECIES	15	PPARGC1A (ENSMMUG00000001844) #9	DHX15 (ENSMMUG00000009637) #10	SOD3 (ENSMMUG00000002612)	CCDC149 (ENSMMUG00000004785) #12	ENSMMUG00000062929	ENSMMUG00000052018	LGI2 (ENSMMUG00000060440) #13	SEPSECS (ENSMMUG00000019784) #14	PI4K2B (ENSMMUG00000003629) #17	ANAPC4 (ENSMMUG00000004458) #19	ENSMMUG00000053638	ENSMMUG00000049554	SLC34A2 (ENSMMUG00000021135) #20	SEL1L3 (ENSMMUG00000020349) #21	ENSMMUG00000006680	RBPJ (ENSMMUG00000015828) #22	CCKAR (ENSMMUG00000049298) #23	TBC1D19 (ENSMMUG00000019239) #24	STIM2 (ENSMMUG00000009439) #25	ENSMMUG00000055119	ENSMMUG00000060404	PCDH7 (ENSMMUG00000011898)	ENSMMUG00000056986	ENSMMUG00000062143	ENSMMUG00000059032	ARAP2 (ENSMMUG00000006871)	DTHD1 (ENSMMUG00000006875)	NWD2 (ENSMMUG00000003676)	C5H4orf19 (ENSMMUG00000009691)	RELL1 (ENSMMUG00000017630)	PGM2 (ENSMMUG00000000232)
Crab-eating macaque	MODERN SPECIES	15	SOD3 (ENSMFAG00000020365)	ENSMFAG00000055313	CCDC149 (ENSMFAG00000042580) #12	LGI2 (ENSMFAG00000036970) #13	SEPSECS (ENSMFAG00000003516) #14	PI4K2B (ENSMFAG00000033102) #17	ENSMFAG00000056821	ZCCHC4 (ENSMFAG00000033636) #18	ANAPC4 (ENSMFAG00000037891) #19	ENSMFAG00000065080	ENSMFAG00000049099	SLC34A2 (ENSMFAG00000020407) #20	SEL1L3 (ENSMFAG00000002093) #21	SMIM20 (ENSMFAG00000033269)	ENSMFAG00000049001	RBPJ (ENSMFAG00000001779) #22	CCKAR (ENSMFAG00000003530) #23	TBC1D19 (ENSMFAG00000000286) #24	STIM2 (ENSMFAG00000034185) #25	ENSMFAG00000056885	ENSMFAG00000036136	PCDH7 (ENSMFAG00000040327)	ENSMFAG00000049710	ENSMFAG00000064925	ENSMFAG00000065581	ENSMFAG00000039044	ENSMFAG00000047594	ENSMFAG00000055627	ENSMFAG00000055647	ENSMFAG00000050317	ARAP2 (ENSMFAG00000041357)
Cercopithecinae_b	ANCESTRAL SPECIES	6	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398.j	ENSGT00390000014814.a.b.a.b.b	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000008128.c.a.b.a	ENSGT00390000000214.a.b #25	ENSGT00390000013931.a.b.b.`b.b	ENSGT00940000157221	ENSGT01030000234945	ENSGT00910000147204	ENSGT00910000147191	ENSGT00860000135660	ENSGT00940000164947	ENSGT00390000014092.k.a	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000170408
Olive baboon	MODERN SPECIES	13	CCDC149 (ENSPANG00000020855) #12	LGI2 (ENSPANG00000016910) #13	ENSPANG00000050688	SEPSECS (ENSPANG00000021177) #14	PI4K2B (ENSPANG00000024999) #17	ENSPANG00000008337	ZCCHC4 (ENSPANG00000013373) #18	ANAPC4 (ENSPANG00000019352) #19	ENSPANG00000037863	ENSPANG00000046005	SLC34A2 (ENSPANG00000043751) #20	ENSPANG00000041131	SEL1L3 (ENSPANG00000000072) #21	SMIM20 (ENSPANG00000032807)	ENSPANG00000030947	RBPJ (ENSPANG00000021176) #22	ENSPANG00000050241	CCKAR (ENSPANG00000019759) #23	ENSPANG00000045844	ENSPANG00000037534	TBC1D19 (ENSPANG00000019571) #24	ENSPANG00000033456	STIM2 (ENSPANG00000016909) #25	ENSPANG00000042786	ENSPANG00000040765	ENSPANG00000043923	PCDH7 (ENSPANG00000015663)	ENSPANG00000043052	ENSPANG00000008054	ENSPANG00000046206	ARAP2 (ENSPANG00000021175)
Cercopithecinae_d	ANCESTRAL SPECIES	91	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398.j	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000008128.c.a.b.a	ENSGT00390000000214.a.b #25	ENSGT00390000013931.a.b.b.`b.b	ENSGT00940000157221	ENSGT01030000234945	ENSGT00910000147204	ENSGT00910000147191	ENSGT00860000135660
Drill	MODERN SPECIES	1453																RBPJ (ENSMLEG00000031229) #22	CCKAR (ENSMLEG00000030034) #23	TBC1D19 (ENSMLEG00000011583) #24	STIM2 (ENSMLEG00000022797) #25
Sooty mangabey	MODERN SPECIES	551	ADGRA3 (ENSCATG00000042545)	GBA3 (ENSCATG00000042364) #8	PPARGC1A (ENSCATG00000032575) #9	ENSCATG00000022340	DHX15 (ENSCATG00000000715) #10	SOD3 (ENSCATG00000021168)	CCDC149 (ENSCATG00000037847) #12	LGI2 (ENSCATG00000043883) #13	SEPSECS (ENSCATG00000041245) #14	PI4K2B (ENSCATG00000015768) #17	ZCCHC4 (ENSCATG00000028628) #18	ANAPC4 (ENSCATG00000035985) #19	SLC34A2 (ENSCATG00000029842) #20	SEL1L3 (ENSCATG00000038183) #21	ENSCATG00000032458	RBPJ (ENSCATG00000044181) #22	CCKAR (ENSCATG00000038819) #23	TBC1D19 (ENSCATG00000009189) #24	ENSCATG00000039543	STIM2 (ENSCATG00000030868) #25	ENSCATG00000018899	ENSCATG00000044558	PCDH7 (ENSCATG00000039870)	ENSCATG00000023352	ENSCATG00000041818
Rhinopithecus	ANCESTRAL SPECIES	553													ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000014814.a.b.a.b.b	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00390000008128.c.a.b
Black snub-nosed monkey	MODERN SPECIES	140													SEL1L3 (ENSRBIG00000040589) #21	ENSRBIG00000030320	ENSRBIG00000015089	RBPJ (ENSRBIG00000040340) #22	CCKAR (ENSRBIG00000044006) #23	TBC1D19 (ENSRBIG00000032962) #24	STIM2 (ENSRBIG00000030774) #25	ENSRBIG00000041821
Golden snub-nosed monkey	DUPLICATION
Golden snub-nosed monkey	MODERN SPECIES	538																ENSRROG00000037809 #22
Golden snub-nosed monkey	MODERN SPECIES	1367												SEL1L3 (ENSRROG00000006205) #21	SMIM20 (ENSRROG00000035862)	ENSRROG00000037997	ENSRROG00000024203	RBPJ (ENSRROG00000008767) #22	CCKAR (ENSRROG00000030028) #23
Hominoidea	ANCESTRAL SPECIES	10	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00940000174987	ENSGT00390000015965 #24	ENSGT00390000008128.c.a.b	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00860000135660	ENSGT01030000234945	ENSGT00910000147204	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247
Gibbon	MODERN SPECIES	12	ENSNLEG00000027847	GBA3 (ENSNLEG00000016754) #8	PPARGC1A (ENSNLEG00000016760) #9	DHX15 (ENSNLEG00000016767) #10	SOD3 (ENSNLEG00000032570)	CCDC149 (ENSNLEG00000016779) #12	LGI2 (ENSNLEG00000016796) #13	SEPSECS (ENSNLEG00000016800) #14	PI4K2B (ENSNLEG00000016814) #17	ZCCHC4 (ENSNLEG00000016824) #18	ANAPC4 (ENSNLEG00000016831) #19	SLC34A2 (ENSNLEG00000016860) #20	SEL1L3 (ENSNLEG00000016867) #21	ENSNLEG00000016894	ENSNLEG00000032692	RBPJ (ENSNLEG00000016895) #22	CCKAR (ENSNLEG00000016913) #23	TBC1D19 (ENSNLEG00000016920) #24	STIM2 (ENSNLEG00000016942) #25	ENSNLEG00000030375	ENSNLEG00000030577	ARAP2 (ENSNLEG00000016967)	DTHD1 (ENSNLEG00000016995)	NWD2 (ENSNLEG00000016998)	C4orf19 (ENSNLEG00000035513)	RELL1 (ENSNLEG00000017005)	PGM2 (ENSNLEG00000017010)	ENSNLEG00000035345	TBC1D1 (ENSNLEG00000017022)	KLF3 (ENSNLEG00000017046)	TLR10 (ENSNLEG00000017048)
Hominidae	ANCESTRAL SPECIES	12	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00940000174987	ENSGT00390000015965 #24	ENSGT00390000008128.c.a.b	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00860000135660	ENSGT01030000234945	ENSGT00910000147204	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247
Orangutan	MODERN SPECIES	17	GBA3 (ENSPPYG00000014639) #8	PPARGC1A (ENSPPYG00000014640) #9	DHX15 (ENSPPYG00000014641) #10	ENSPPYG00000036250	SOD3 (ENSPPYG00000014642)	CCDC149 (ENSPPYG00000014643) #12	LGI2 (ENSPPYG00000039828) #13	SEPSECS (ENSPPYG00000014645) #14	PI4K2B (ENSPPYG00000014646) #17	ZCCHC4 (ENSPPYG00000014647) #18	ANAPC4 (ENSPPYG00000034769) #19	SLC34A2 (ENSPPYG00000014649) #20	ENSPPYG00000031785	SEL1L3 (ENSPPYG00000014650) #21	SMIM20 (ENSPPYG00000014651)	RBPJ (ENSPPYG00000014652) #22	CCKAR (ENSPPYG00000014653) #23	TBC1D19 (ENSPPYG00000014654) #24	STIM2 (ENSPPYG00000014655) #25	PCDH7 (ENSPPYG00000031272)	ENSPPYG00000031494	ENSPPYG00000034474	ARAP2 (ENSPPYG00000032983)	DTHD1 (ENSPPYG00000037872)	NWD2 (ENSPPYG00000030808)	C4orf19 (ENSPPYG00000038950)	RELL1 (ENSPPYG00000031559)	PGM2 (ENSPPYG00000014661)	TBC1D1 (ENSPPYG00000014663)	KLF3 (ENSPPYG00000014666)	TLR10 (ENSPPYG00000014667)
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	11	ENSGT00940000157235	ENSGT00950000182891.a.a.b.a.b.a.s.c.a	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00940000174987	ENSGT00390000015965 #24	ENSGT00390000008128.c.a.b	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT01030000234945	ENSGT00910000147204	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00770000121815
Homo/Pan group	ANCESTRAL SPECIES	10	ENSGT00940000157235	ENSGT00950000182891.a.a.b.a.b.a.s.c.a	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00940000174987	ENSGT00390000015965 #24	ENSGT00390000008128.c.a.b	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT01030000234945	ENSGT00910000147204	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00770000121815
Human	MODERN SPECIES	16	KCNIP4 (ENSG00000185774)	ADGRA3 (ENSG00000152990)	GBA3 (ENSG00000249948) #8	PPARGC1A (ENSG00000109819) #9	DHX15 (ENSG00000109606) #10	SOD3 (ENSG00000109610)	CCDC149 (ENSG00000181982) #12	LGI2 (ENSG00000153012) #13	SEPSECS (ENSG00000109618) #14	PI4K2B (ENSG00000038210) #17	ZCCHC4 (ENSG00000168228) #18	ANAPC4 (ENSG00000053900) #19	SLC34A2 (ENSG00000157765) #20	SEL1L3 (ENSG00000091490) #21	SMIM20 (ENSG00000250317)	RBPJ (ENSG00000168214) #22	CCKAR (ENSG00000163394) #23	TBC1D19 (ENSG00000109680) #24	STIM2 (ENSG00000109689) #25	PCDH7 (ENSG00000169851)	ARAP2 (ENSG00000047365)	DTHD1 (ENSG00000197057)	NWD2 (ENSG00000174145)	C4orf19 (ENSG00000154274)	RELL1 (ENSG00000181826)	PGM2 (ENSG00000169299)	TBC1D1 (ENSG00000065882)	PTTG2 (ENSG00000250254)	KLF3 (ENSG00000109787)	TLR10 (ENSG00000174123)	TLR1 (ENSG00000174125)
Pan	ANCESTRAL SPECIES	7	ENSGT00940000157235	ENSGT00950000182891.a.a.b.a.b.a.s.c.a	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00940000174987	ENSGT00390000015965 #24	ENSGT00390000008128.c.a.b	ENSGT00390000000214.a.b #25	ENSGT00510000047602.q.a.b	ENSGT00940000157221	ENSGT01030000234945	ENSGT00910000147204	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00950000182922.a.a.a.a.v.a.b
Bonobo	DUPLICATION
Bonobo	MODERN SPECIES	245																ENSPPAG00000029110 #22
Bonobo	MODERN SPECIES	17	ADGRA3 (ENSPPAG00000035849)	ENSPPAG00000011801	GBA3 (ENSPPAG00000040905) #8	PPARGC1A (ENSPPAG00000034694) #9	DHX15 (ENSPPAG00000030385) #10	SOD3 (ENSPPAG00000022679)	CCDC149 (ENSPPAG00000040269) #12	LGI2 (ENSPPAG00000043039) #13	SEPSECS (ENSPPAG00000037022) #14	PI4K2B (ENSPPAG00000040564) #17	ZCCHC4 (ENSPPAG00000031116) #18	ANAPC4 (ENSPPAG00000040743) #19	SLC34A2 (ENSPPAG00000031554) #20	SEL1L3 (ENSPPAG00000026819) #21	SMIM20 (ENSPPAG00000037198)	RBPJ (ENSPPAG00000042016) #22	CCKAR (ENSPPAG00000027751) #23	ENSPPAG00000027805	TBC1D19 (ENSPPAG00000039764) #24	STIM2 (ENSPPAG00000031199) #25	ENSPPAG00000016299	ENSPPAG00000042295	ENSPPAG00000042304	ENSPPAG00000000803	ENSPPAG00000011861	ENSPPAG00000043616	ARAP2 (ENSPPAG00000039913)	DTHD1 (ENSPPAG00000036797)	NWD2 (ENSPPAG00000043576)	C4orf19 (ENSPPAG00000036566)	RELL1 (ENSPPAG00000030468)
Chimpanzee	DUPLICATION
Chimpanzee	DUPLICATION
Chimpanzee	MODERN SPECIES	22	PRKACG (ENSPTRG00000021003)	PIP5K1B (ENSPTRG00000021001)	TMEM252 (ENSPTRG00000046632)	PGM5 (ENSPTRG00000020999)	ENSPTRG00000046738	ENSPTRG00000023301	ENSPTRG00000047309	FOXD4L4 (ENSPTRG00000029251)	ENSPTRG00000043500	ENSPTRG00000045680	ENSPTRG00000012453	ENSPTRG00000045466	ENSPTRG00000044630	ENSPTRG00000045832	ENSPTRG00000047349	ENSPTRG00000051438 #22	ENSPTRG00000044230	ENSPTRG00000047131	ENSPTRG00000050918	ENSPTRG00000020961	ENSPTRG00000044054	FAM240B (ENSPTRG00000045884)	ANKRD18A (ENSPTRG00000020959)	ENSPTRG00000042856	ENSPTRG00000046180	IGFBPL1 (ENSPTRG00000020957)	ALDH1B1 (ENSPTRG00000020956)	SHB (ENSPTRG00000020955)	SLC25A51 (ENSPTRG00000020954)	DCAF10 (ENSPTRG00000020953)	EXOSC3 (ENSPTRG00000020952)
Chimpanzee	MODERN SPECIES	678															ENSPTRG00000050028	ENSPTRG00000046898 #22
Chimpanzee	MODERN SPECIES	17	ADGRA3 (ENSPTRG00000015949)	ENSPTRG00000042867	GBA3 (ENSPTRG00000043929) #8	PPARGC1A (ENSPTRG00000015954) #9	DHX15 (ENSPTRG00000015955) #10	SOD3 (ENSPTRG00000015956)	CCDC149 (ENSPTRG00000015957) #12	LGI2 (ENSPTRG00000045126) #13	SEPSECS (ENSPTRG00000015959) #14	PI4K2B (ENSPTRG00000015960) #17	ZCCHC4 (ENSPTRG00000015962) #18	ANAPC4 (ENSPTRG00000015963) #19	SLC34A2 (ENSPTRG00000015965) #20	SEL1L3 (ENSPTRG00000015966) #21	ENSPTRG00000015967	RBPJ (ENSPTRG00000015968) #22	CCKAR (ENSPTRG00000015969) #23	TBC1D19 (ENSPTRG00000015970) #24	STIM2 (ENSPTRG00000015971) #25	ENSPTRG00000052671	ENSPTRG00000045470	PCDH7 (ENSPTRG00000015972)	ENSPTRG00000051795	ENSPTRG00000044907	ARAP2 (ENSPTRG00000015973)	DTHD1 (ENSPTRG00000022641)	NWD2 (ENSPTRG00000015976)	C4H4orf19 (ENSPTRG00000015977)	RELL1 (ENSPTRG00000015978)	ENSPTRG00000045616	PGM2 (ENSPTRG00000015979)
Gorilla	DUPLICATION
Gorilla	MODERN SPECIES	96																ENSGGOG00000037805 #22
Gorilla	MODERN SPECIES	17	ENSGGOG00000038375	ADGRA3 (ENSGGOG00000026666)	ENSGGOG00000026378	GBA3 (ENSGGOG00000013597) #8	PPARGC1A (ENSGGOG00000009810) #9	DHX15 (ENSGGOG00000016819) #10	CCDC149 (ENSGGOG00000010166) #12	LGI2 (ENSGGOG00000023809) #13	SEPSECS (ENSGGOG00000025528) #14	PI4K2B (ENSGGOG00000014057) #17	ZCCHC4 (ENSGGOG00000016476) #18	ANAPC4 (ENSGGOG00000025631) #19	SLC34A2 (ENSGGOG00000016668) #20	SEL1L3 (ENSGGOG00000001417) #21	ENSGGOG00000013757	RBPJ (ENSGGOG00000004582) #22	CCKAR (ENSGGOG00000015177) #23	TBC1D19 (ENSGGOG00000025239) #24	STIM2 (ENSGGOG00000000474) #25	ENSGGOG00000038446	PCDH7 (ENSGGOG00000004233)	ENSGGOG00000043031	ENSGGOG00000043518	ENSGGOG00000038770	ENSGGOG00000040174	ARAP2 (ENSGGOG00000007115)	DTHD1 (ENSGGOG00000009433)	NWD2 (ENSGGOG00000016156)	C4orf19 (ENSGGOG00000017146)	RELL1 (ENSGGOG00000014944)	PGM2 (ENSGGOG00000013725)
Euarchontoglires_A	ANCESTRAL SPECIES	9	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT01040000242873	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00900000143434	ENSGT00940000157456	ENSGT00940000163662	ENSGT00940000162884
Tree shrew	MODERN SPECIES	8110																RBPJ (ENSTBEG00000002676) #22
Glires	ANCESTRAL SPECIES	8	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00900000143434	ENSGT00940000157456	ENSGT00940000163662	ENSGT00940000162884
Rodentia	DUPLICATION
Rodentia	DUPLICATION
Rodentia	ANCESTRAL SPECIES																	ENSGT00390000005197.a.a.a #22
Rodentia_A	ANCESTRAL SPECIES																	ENSGT00390000005197.a.a.a #22
Hystricomorpha	ANCESTRAL SPECIES																	ENSGT00390000005197.a.a.a #22
Hystricomorpha_a	ANCESTRAL SPECIES																	ENSGT00390000005197.a.a.a #22
Hystricomorpha_b	ANCESTRAL SPECIES																	ENSGT00390000005197.a.a.a #22
Degu	MODERN SPECIES	60	ENSODEG00000008774	PUM2 (ENSODEG00000007823)	ENSODEG00000010362	RHOB (ENSODEG00000019841)	HS1BP3 (ENSODEG00000010003)	GDF7 (ENSODEG00000008847)	ENSODEG00000008523	APOB (ENSODEG00000008337)	ENSODEG00000019494	ENSODEG00000007994	ENSODEG00000019450	ENSODEG00000007428	KLHL29 (ENSODEG00000009928)	ENSODEG00000008786	ENSODEG00000009834	ENSODEG00000008643 #22	ENSODEG00000007644	ENSODEG00000007455	ENSODEG00000008882	ENSODEG00000010244	SF3B6 (ENSODEG00000009547)	ENSODEG00000007981	PFN4 (ENSODEG00000008303)	ENSODEG00000007545	ENSODEG00000007584	NCOA1 (ENSODEG00000008181)	PTRHD1 (ENSODEG00000007805)	ADCY3 (ENSODEG00000007982)	DNAJC27 (ENSODEG00000007488)	EFR3B (ENSODEG00000007566)	POMC (ENSODEG00000010910)
Naked mole-rat female	MODERN SPECIES	15	ENSHGLG00000010031	ENSHGLG00000040318	CCP110 (ENSHGLG00000018807)	VPS35L (ENSHGLG00000018818)	KNOP1 (ENSHGLG00000049260)	IQCK (ENSHGLG00000014331)	ENSHGLG00000049053	GPR139 (ENSHGLG00000034334)	ENSHGLG00000050561	ENSHGLG00000009974	UMOD (ENSHGLG00000006685)	PDILT (ENSHGLG00000008450)	ACSM5 (ENSHGLG00000010732)	ENSHGLG00000011441	ENSHGLG00000037112	ENSHGLG00000012971 #22	ENSHGLG00000006014	ENSHGLG00000049216	ENSHGLG00000007282	ENSHGLG00000049148	ENSHGLG00000007912	BFAR (ENSHGLG00000008907)	PARN (ENSHGLG00000010886)	MRTFB (ENSHGLG00000019009)	ENSHGLG00000049641	ERCC4 (ENSHGLG00000016661)	ENSHGLG00000017807	ENSHGLG00000035327	SHISA9 (ENSHGLG00000013207)	CPPED1 (ENSHGLG00000011022)	SNX29 (ENSHGLG00000012310)
Rodentia_B	ANCESTRAL SPECIES																	ENSGT00390000005197.a.a.a #22
Myomorpha	ANCESTRAL SPECIES																	ENSGT00390000005197.a.a.a #22
Muroidea	ANCESTRAL SPECIES																	ENSGT00390000005197.a.a.a #22
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	1885	Apobec1 (ENSNGAG00000022607)	Gdf3 (ENSNGAG00000018140)	ENSNGAG00000011538	Slc2a3 (ENSNGAG00000012042)	Foxj2 (ENSNGAG00000017980)	C3ar1 (ENSNGAG00000014090)	Necap1 (ENSNGAG00000015511)	Clec4a1 (ENSNGAG00000023338)	ENSNGAG00000023388	ENSNGAG00000009568	Clec4n (ENSNGAG00000022656)	Clec4d (ENSNGAG00000003581)	Clec4e (ENSNGAG00000010318)	Cd163 (ENSNGAG00000004434)	ENSNGAG00000023205	ENSNGAG00000023425 #22	Pex5 (ENSNGAG00000022852)	Clstn3 (ENSNGAG00000022664)	ENSNGAG00000018451	C1rl (ENSNGAG00000023384)	ENSNGAG00000021958	ENSNGAG00000019975	Lpcat3 (ENSNGAG00000019456)	Emg1 (ENSNGAG00000022592)	ENSNGAG00000023489	Ptpn6 (ENSNGAG00000006668)	Grcc10 (ENSNGAG00000015624)	Atn1 (ENSNGAG00000003346)	Eno2 (ENSNGAG00000019726)	Lrrc23 (ENSNGAG00000023434)	ENSNGAG00000019265
Upper Galilee mountains blind mole rat	MODERN SPECIES	1012															ENSNGAG00000020113	ENSNGAG00000019133 #22	ENSNGAG00000001446	Pcdh10 (ENSNGAG00000014347)	Pabpc4l (ENSNGAG00000001502)	Pcdh18 (ENSNGAG00000002486)	Slc7a11 (ENSNGAG00000012488)
Muroidea_A	ANCESTRAL SPECIES																	ENSGT00390000005197.a.a.a #22
Cricetidae	ANCESTRAL SPECIES																	ENSGT00390000005197.a.a.a #22
Cricetidae_B	ANCESTRAL SPECIES																	ENSGT00390000005197.a.a.a #22
Prairie vole	MODERN SPECIES	147														ENSMOCG00000001414	ENSMOCG00000000686	ENSMOCG00000000319 #22	ENSMOCG00000000225	ENSMOCG00000022343	Tmem47 (ENSMOCG00000000092)
Rodentia	ANCESTRAL SPECIES																	ENSGT00390000005197.a.a.b #22
Rodentia_A	ANCESTRAL SPECIES																	ENSGT00390000005197.a.a.b #22
Hystricomorpha	ANCESTRAL SPECIES																	ENSGT00390000005197.a.a.b #22
Naked mole-rat female	MODERN SPECIES	3	TRPM3 (ENSHGLG00000009801)	ENSHGLG00000034795	ENSHGLG00000003100	TMEM2 (ENSHGLG00000013965)	ABHD17B (ENSHGLG00000032723)	ENSHGLG00000015860	ENSHGLG00000044859	ENSHGLG00000013674	GDA (ENSHGLG00000012950)	ENSHGLG00000041124	ENSHGLG00000033487	TMC1 (ENSHGLG00000015834)	ENSHGLG00000036208	ENSHGLG00000037149	ENSHGLG00000000865	ENSHGLG00000034386 #22	ENSHGLG00000001938	ALDH1A1 (ENSHGLG00000010105)	ANXA1 (ENSHGLG00000000400)	ENSHGLG00000047470	ENSHGLG00000031934	RORB (ENSHGLG00000000695)	ENSHGLG00000040715	TRPM6 (ENSHGLG00000003851)	C9orf40 (ENSHGLG00000000280)	ENSHGLG00000050025	ENSHGLG00000033948	CARNMT1 (ENSHGLG00000000378)	ENSHGLG00000002210	ENSHGLG00000044788	ENSHGLG00000049071
Rodentia	ANCESTRAL SPECIES	13	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00900000143434	ENSGT00940000157456	ENSGT00940000163662	ENSGT00940000162884
Rodentia_B	ANCESTRAL SPECIES	19	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201
Kangaroo rat	MODERN SPECIES	327	Kcnip4 (ENSDORG00000015626)	ENSDORG00000024508	Adgra3 (ENSDORG00000007520)	ENSDORG00000011391 #8	Ppargc1a (ENSDORG00000016276) #9	Dhx15 (ENSDORG00000013848) #10	Ccdc149 (ENSDORG00000005628) #12	Lgi2 (ENSDORG00000005632) #13	Sepsecs (ENSDORG00000012655) #14	Pi4k2b (ENSDORG00000000491) #17	ENSDORG00000012901 #18	ENSDORG00000025086	Slc34a2 (ENSDORG00000016105) #20	Sel1l3 (ENSDORG00000011773) #21	Smim20 (ENSDORG00000028531)	Rbpj (ENSDORG00000006352) #22	Cckar (ENSDORG00000006353) #23	Tbc1d19 (ENSDORG00000013790) #24	Stim2 (ENSDORG00000016610) #25	ENSDORG00000028755 #25	ENSDORG00000008260	Pcdh7 (ENSDORG00000029117)	ENSDORG00000028110	Arap2 (ENSDORG00000008160)	Dthd1 (ENSDORG00000001578)	Nwd2 (ENSDORG00000023758)	0610040J01Rik (ENSDORG00000011992)	Rell1 (ENSDORG00000008354)	Pgm2 (ENSDORG00000027647)	Tbc1d1 (ENSDORG00000010269)	Klf3 (ENSDORG00000023213)
Myomorpha	ANCESTRAL SPECIES	19	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201
Lesser Egyptian jerboa	MODERN SPECIES	58	Adgra3 (ENSJJAG00000000786)	ENSJJAG00000023479 #8	ENSJJAG00000018377 #9	Dhx15 (ENSJJAG00000010364) #10	ENSJJAG00000010774	Sod3 (ENSJJAG00000019475)	Ccdc149 (ENSJJAG00000016740) #12	Lgi2 (ENSJJAG00000021018) #13	Sepsecs (ENSJJAG00000001251) #14	Pi4k2b (ENSJJAG00000021578) #17	Zcchc4 (ENSJJAG00000016627) #18	ENSJJAG00000023054 #19	Slc34a2 (ENSJJAG00000023515) #20	Sel1l3 (ENSJJAG00000018980) #21	Smim20 (ENSJJAG00000020734)	Rbpj (ENSJJAG00000024408) #22	Cckar (ENSJJAG00000009819) #23	Tbc1d19 (ENSJJAG00000015623) #24	Stim2 (ENSJJAG00000014478) #25	ENSJJAG00000011152	ENSJJAG00000011305	ENSJJAG00000024218	Pcdh7 (ENSJJAG00000021210)	Arap2 (ENSJJAG00000009614)	Dthd1 (ENSJJAG00000013536)	Nwd2 (ENSJJAG00000011338)	Rell1 (ENSJJAG00000015408)
Muroidea	ANCESTRAL SPECIES	17	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201
Upper Galilee mountains blind mole rat	MODERN SPECIES	986	Adgra3 (ENSNGAG00000012199)	ENSNGAG00000014375 #8	Ppargc1a (ENSNGAG00000015090) #9	Dhx15 (ENSNGAG00000016196) #10	Sod3 (ENSNGAG00000017105)	Ccdc149 (ENSNGAG00000017784) #12	Lgi2 (ENSNGAG00000018556) #13	Sepsecs (ENSNGAG00000000721) #14	Pi4k2b (ENSNGAG00000001252) #17	Zcchc4 (ENSNGAG00000015745) #18	ENSNGAG00000018886	ENSNGAG00000019141	Slc34a2 (ENSNGAG00000000788) #20	Sel1l3 (ENSNGAG00000008965) #21	Smim20 (ENSNGAG00000009723)	Rbpj (ENSNGAG00000013338) #22	ENSNGAG00000021067	Cckar (ENSNGAG00000021342) #23	Tbc1d19 (ENSNGAG00000000629) #24	ENSNGAG00000007794	Stim2 (ENSNGAG00000016987) #25
Muroidea_A	ANCESTRAL SPECIES	13	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201
Murinae	ANCESTRAL SPECIES	12	ENSGT00940000160460 #8	ENSGT01100000263543.a	ENSGT01100000263511.b.a.b.a.a	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201
Rat	DUPLICATION
Rat	MODERN SPECIES	5	ENSRNOG00000067137	Ppargc1a (ENSRNOG00000004473) #9	Dhx15 (ENSRNOG00000003844) #10	Sod3 (ENSRNOG00000003869)	ENSRNOG00000064588	Ccdc149 (ENSRNOG00000024454) #12	Lgi2 (ENSRNOG00000066201) #13	Sepsecs (ENSRNOG00000049244) #14	Pi4k2b (ENSRNOG00000003924) #17	Zcchc4 (ENSRNOG00000029064) #18	Anapc4 (ENSRNOG00000004130) #19	Slc34a2 (ENSRNOG00000004626) #20	Sel1l3 (ENSRNOG00000004932) #21	AABR07015507.1 (ENSRNOG00000051190)	LOC100361259 (ENSRNOG00000055911)	Rbpj (ENSRNOG00000046327) #22	Cckar (ENSRNOG00000043124) #23	Tbc1d19 (ENSRNOG00000003003) #24	Stim2 (ENSRNOG00000002956) #25	ENSRNOG00000067114	Pcdh7 (ENSRNOG00000012367)	Pcdh7 (ENSRNOG00000063828)	ENSRNOG00000067336	AABR07015346.1 (ENSRNOG00000027791)	ENSRNOG00000065159	LOC108348204 (ENSRNOG00000063351)	ENSRNOG00000065472	Arap2 (ENSRNOG00000056826)	AABR07015180.1 (ENSRNOG00000026134)	Nwd2 (ENSRNOG00000051837)	LOC498368 (ENSRNOG00000002191)
Rat	MODERN SPECIES	15	Eloc (ENSRNOG00000031730)	Ube2w (ENSRNOG00000062415)	AABR07046707.1 (ENSRNOG00000042458)	ENSRNOG00000069669	Rdh10 (ENSRNOG00000006681)	LOC100912291 (ENSRNOG00000047310)	LOC297756 (ENSRNOG00000007238)	Sbspon (ENSRNOG00000007258)	Terf1 (ENSRNOG00000007291)	AC125757.1 (ENSRNOG00000028991)	AABR07047316.1 (ENSRNOG00000062174)	ENSRNOG00000067608	Trpa1 (ENSRNOG00000007354)	Msc (ENSRNOG00000007540)	Eya1 (ENSRNOG00000007590)	Rbpjl2 (ENSRNOG00000007797) #22	Xkr9 (ENSRNOG00000040289)	Lactb2 (ENSRNOG00000007829)	Tram1 (ENSRNOG00000007892)	Ncoa2 (ENSRNOG00000007975)	AABR07046763.1 (ENSRNOG00000059973)	Prdm14 (ENSRNOG00000021792)	Slco5a1 (ENSRNOG00000008966)	Sulf1 (ENSRNOG00000009037)	RGD1564053 (ENSRNOG00000005375)	Prex2 (ENSRNOG00000005391)	Cpa6 (ENSRNOG00000005655)	Arfgef1 (ENSRNOG00000005703)	Cspp1 (ENSRNOG00000021718)	Cops5 (ENSRNOG00000006499)	Tcf24 (ENSRNOG00000052668)
Mus	ANCESTRAL SPECIES	14	ENSGT00940000159756	ENSGT00940000158985	ENSGT00940000157235	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00530000063435.a.p	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000162884	ENSGT00940000162201
Shrew mouse	MODERN SPECIES	4	Kcnip4 (MGP_PahariEiJ_G0016992)	MGP_PahariEiJ_G0016993	Adgra3 (MGP_PahariEiJ_G0016994)	Ppargc1a (MGP_PahariEiJ_G0016995) #9	Dhx15 (MGP_PahariEiJ_G0016996) #10	Sod3 (MGP_PahariEiJ_G0016997)	Ccdc149 (MGP_PahariEiJ_G0016998) #12	Lgi2 (MGP_PahariEiJ_G0016999) #13	Sepsecs (MGP_PahariEiJ_G0017000) #14	Pi4k2b (MGP_PahariEiJ_G0017001) #17	Zcchc4 (MGP_PahariEiJ_G0017002) #18	Anapc4 (MGP_PahariEiJ_G0017003) #19	Slc34a2 (MGP_PahariEiJ_G0017004) #20	Sel1l3 (MGP_PahariEiJ_G0017005) #21	Smim20 (MGP_PahariEiJ_G0017006)	Rbpj (MGP_PahariEiJ_G0017007) #22	Cckar (MGP_PahariEiJ_G0017008) #23	Tbc1d19 (MGP_PahariEiJ_G0017009) #24	Stim2 (MGP_PahariEiJ_G0017010) #25	Pcdh7 (MGP_PahariEiJ_G0017011)	G6pd2 (MGP_PahariEiJ_G0017012)	Arap2 (MGP_PahariEiJ_G0017013)	Dthd1 (MGP_PahariEiJ_G0017014)	Nwd2 (MGP_PahariEiJ_G0017015)	0610040J01Rik (MGP_PahariEiJ_G0017016)	Rell1 (MGP_PahariEiJ_G0017017)	Pgm2 (MGP_PahariEiJ_G0017018)	Tbc1d1 (MGP_PahariEiJ_G0017019)	Klf3 (MGP_PahariEiJ_G0017020)	Tlr1 (MGP_PahariEiJ_G0017021)	Tlr6 (MGP_PahariEiJ_G0017022)
Mus_A	ANCESTRAL SPECIES	6	ENSGT00940000159756	ENSGT00940000158985	ENSGT00940000157235	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00530000063435.a.p	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000162884	ENSGT00940000162201
Ryukyu mouse	MODERN SPECIES	14	Kcnip4 (MGP_CAROLIEiJ_G0027210)	MGP_CAROLIEiJ_G0027211	Adgra3 (MGP_CAROLIEiJ_G0027212)	Ppargc1a (MGP_CAROLIEiJ_G0027213) #9	Dhx15 (MGP_CAROLIEiJ_G0027214) #10	Sod3 (MGP_CAROLIEiJ_G0027215)	Ccdc149 (MGP_CAROLIEiJ_G0027216) #12	Lgi2 (MGP_CAROLIEiJ_G0027217) #13	Sepsecs (MGP_CAROLIEiJ_G0027218) #14	Pi4k2b (MGP_CAROLIEiJ_G0027219) #17	Zcchc4 (MGP_CAROLIEiJ_G0027220) #18	Anapc4 (MGP_CAROLIEiJ_G0027221) #19	Slc34a2 (MGP_CAROLIEiJ_G0027222) #20	Sel1l3 (MGP_CAROLIEiJ_G0027223) #21	Smim20 (MGP_CAROLIEiJ_G0027224)	MGP_CAROLIEiJ_G0027225 #22	Cckar (MGP_CAROLIEiJ_G0027226) #23	Tbc1d19 (MGP_CAROLIEiJ_G0027227) #24	Stim2 (MGP_CAROLIEiJ_G0027228) #25	Pcdh7 (MGP_CAROLIEiJ_G0027229)	G6pd2 (MGP_CAROLIEiJ_G0027230)	Arap2 (MGP_CAROLIEiJ_G0027231)	Dthd1 (MGP_CAROLIEiJ_G0027232)	Nwd2 (MGP_CAROLIEiJ_G0027233)	0610040J01Rik (MGP_CAROLIEiJ_G0027234)	Rell1 (MGP_CAROLIEiJ_G0027235)	Pgm2 (MGP_CAROLIEiJ_G0027236)	MGP_CAROLIEiJ_G0027237	Klf3 (MGP_CAROLIEiJ_G0027238)	Tlr1 (MGP_CAROLIEiJ_G0027239)	Tlr6 (MGP_CAROLIEiJ_G0027240)
Mus_B	ANCESTRAL SPECIES	4	ENSGT00940000159756	ENSGT00940000158985	ENSGT00940000157235	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00530000063435.a.p	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000162884	ENSGT00940000162201
Mouse	MODERN SPECIES	14	5730480H06Rik (ENSMUSG00000029089)	Kcnip4 (ENSMUSG00000029088)	Adgra3 (ENSMUSG00000029090)	Ppargc1a (ENSMUSG00000029167) #9	Dhx15 (ENSMUSG00000029169) #10	Sod3 (ENSMUSG00000072941)	Ccdc149 (ENSMUSG00000045790) #12	Lgi2 (ENSMUSG00000039252) #13	Sepsecs (ENSMUSG00000029173) #14	Pi4k2b (ENSMUSG00000029186) #17	Zcchc4 (ENSMUSG00000029179) #18	Anapc4 (ENSMUSG00000029176) #19	Slc34a2 (ENSMUSG00000029188) #20	Sel1l3 (ENSMUSG00000029189) #21	Smim20 (ENSMUSG00000061461)	Rbpj (ENSMUSG00000039191) #22	Cckar (ENSMUSG00000029193) #23	Tbc1d19 (ENSMUSG00000039178) #24	Stim2 (ENSMUSG00000039156) #25	Pcdh7 (ENSMUSG00000029108)	G6pd2 (ENSMUSG00000089992)	Arap2 (ENSMUSG00000037999)	Dthd1 (ENSMUSG00000090326)	Nwd2 (ENSMUSG00000090061)	0610040J01Rik (ENSMUSG00000060512)	Rell1 (ENSMUSG00000047881)	Pgm2 (ENSMUSG00000029171)	Tbc1d1 (ENSMUSG00000029174)	Klf3 (ENSMUSG00000029178)	Tlr1 (ENSMUSG00000044827)	Tlr6 (ENSMUSG00000051498)
Mus_C	ANCESTRAL SPECIES	4	ENSGT00940000159756	ENSGT00940000158985	ENSGT00940000157235	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00530000063435.a.p	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000162884	ENSGT00940000162201
Steppe mouse	MODERN SPECIES	3046													Slc34a2 (ENSMSIG00000006630) #20	Sel1l3 (ENSMSIG00000006452) #21	Smim20 (ENSMSIG00000006400)	Rbpj (ENSMSIG00000006294) #22	Cckar (ENSMSIG00000006255) #23	Tbc1d19 (ENSMSIG00000006182) #24	Stim2 (ENSMSIG00000006059) #25
spretus	MODERN SPECIES	14	5730480H06Rik (MGP_SPRETEiJ_G0028205)	Kcnip4 (MGP_SPRETEiJ_G0028206)	Adgra3 (MGP_SPRETEiJ_G0028207)	Ppargc1a (MGP_SPRETEiJ_G0028208) #9	Dhx15 (MGP_SPRETEiJ_G0028209) #10	Sod3 (MGP_SPRETEiJ_G0028210)	Ccdc149 (MGP_SPRETEiJ_G0028211) #12	Lgi2 (MGP_SPRETEiJ_G0028212) #13	Sepsecs (MGP_SPRETEiJ_G0028213) #14	Pi4k2b (MGP_SPRETEiJ_G0028214) #17	Zcchc4 (MGP_SPRETEiJ_G0028215) #18	Anapc4 (MGP_SPRETEiJ_G0028216) #19	Slc34a2 (MGP_SPRETEiJ_G0028217) #20	Sel1l3 (MGP_SPRETEiJ_G0028218) #21	Smim20 (MGP_SPRETEiJ_G0028219)	MGP_SPRETEiJ_G0028220 #22	Cckar (MGP_SPRETEiJ_G0028221) #23	Tbc1d19 (MGP_SPRETEiJ_G0028222) #24	Stim2 (MGP_SPRETEiJ_G0028223) #25	Pcdh7 (MGP_SPRETEiJ_G0028224)	G6pd2 (MGP_SPRETEiJ_G0028225)	Arap2 (MGP_SPRETEiJ_G0028226)	Dthd1 (MGP_SPRETEiJ_G0028227)	Nwd2 (MGP_SPRETEiJ_G0028228)	0610040J01Rik (MGP_SPRETEiJ_G0028229)	Rell1 (MGP_SPRETEiJ_G0028230)	Pgm2 (MGP_SPRETEiJ_G0028231)	Tbc1d1 (MGP_SPRETEiJ_G0028232)	Klf3 (MGP_SPRETEiJ_G0028233)	Tlr6 (MGP_SPRETEiJ_G0028235)	Fam114a1 (MGP_SPRETEiJ_G0028236)
Cricetidae	ANCESTRAL SPECIES	14	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT01030000234945	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000163662	ENSGT00940000162884
Cricetidae_B	ANCESTRAL SPECIES	9	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT01030000234945	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000162884	ENSGT00390000010054.b
Northern American deer mouse	MODERN SPECIES	1	Adgra3 (ENSPEMG00000017979)	ENSPEMG00000009892 #8	Ppargc1a (ENSPEMG00000010892) #9	Dhx15 (ENSPEMG00000012226) #10	Sod3 (ENSPEMG00000028688)	Ccdc149 (ENSPEMG00000012229) #12	Lgi2 (ENSPEMG00000011026) #13	Sepsecs (ENSPEMG00000006742) #14	Pi4k2b (ENSPEMG00000007793) #17	Zcchc4 (ENSPEMG00000013522) #18	ENSPEMG00000029080	Anapc4 (ENSPEMG00000014070) #19	Slc34a2 (ENSPEMG00000007479) #20	Sel1l3 (ENSPEMG00000020373) #21	Smim20 (ENSPEMG00000030098)	Rbpj (ENSPEMG00000010386) #22	Cckar (ENSPEMG00000025192) #23	Tbc1d19 (ENSPEMG00000010326) #24	Stim2 (ENSPEMG00000013752) #25	ENSPEMG00000008427	Pcdh7 (ENSPEMG00000012079)	ENSPEMG00000025746	ENSPEMG00000026158	ENSPEMG00000029628	ENSPEMG00000014650	ENSPEMG00000029590	Arap2 (ENSPEMG00000017210)	Dthd1 (ENSPEMG00000018338)	Nwd2 (ENSPEMG00000018695)	0610040J01Rik (ENSPEMG00000018765)	Rell1 (ENSPEMG00000019052)
Prairie vole	MODERN SPECIES	349	ENSMOCG00000004401	ENSMOCG00000015030	Vwc2 (ENSMOCG00000022092)	Zpbp (ENSMOCG00000005757)	Spata48 (ENSMOCG00000014867)	Ikzf1 (ENSMOCG00000003097)	Fignl1 (ENSMOCG00000010841)	Ddc (ENSMOCG00000014117)	Grb10 (ENSMOCG00000013383)	Cobl (ENSMOCG00000016899)	ENSMOCG00000001123	ENSMOCG00000001110	Slc34a2 (ENSMOCG00000000230) #20	Sel1l3 (ENSMOCG00000013009) #21	Smim20 (ENSMOCG00000017669)	ENSMOCG00000018816 #22	Cckar (ENSMOCG00000004693) #23	Tbc1d19 (ENSMOCG00000013897) #24	Stim2 (ENSMOCG00000017892) #25	ENSMOCG00000000264	ENSMOCG00000004908	ENSMOCG00000017801	Pcdh7 (ENSMOCG00000019554)	ENSMOCG00000016594	ENSMOCG00000017532	Arap2 (ENSMOCG00000008948)	Dthd1 (ENSMOCG00000019885)	Nwd2 (ENSMOCG00000002726)	ENSMOCG00000004195	0610040J01Rik (ENSMOCG00000010145)	Rell1 (ENSMOCG00000013662)
Cricetinae	ANCESTRAL SPECIES	9	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201
Golden Hamster	MODERN SPECIES	632	ENSMAUG00000007284	Adgra3 (ENSMAUG00000012066)	ENSMAUG00000007935	ENSMAUG00000006861 #8	Ppargc1a (ENSMAUG00000011811) #9	Dhx15 (ENSMAUG00000011535) #10	Ccdc149 (ENSMAUG00000001813) #12	Lgi2 (ENSMAUG00000020219) #13	Sepsecs (ENSMAUG00000002352) #14	Pi4k2b (ENSMAUG00000015492) #17	Zcchc4 (ENSMAUG00000017115) #18	Anapc4 (ENSMAUG00000015911) #19	Slc34a2 (ENSMAUG00000016072) #20	Sel1l3 (ENSMAUG00000009548) #21	Smim20 (ENSMAUG00000016115)	Rbpj (ENSMAUG00000020612) #22	Cckar (ENSMAUG00000020673) #23	Tbc1d19 (ENSMAUG00000018698) #24	Stim2 (ENSMAUG00000018372) #25
Chinese hamster chok1gshd	MODERN SPECIES	44	ENSCGRG00001005713	Ppargc1a (ENSCGRG00001015534) #9	Dhx15 (ENSCGRG00001023527) #10	Sod3 (ENSCGRG00001009531)	Ccdc149 (ENSCGRG00001001092) #12	Lgi2 (ENSCGRG00001010617) #13	Sepsecs (ENSCGRG00001023389) #14	Pi4k2b (ENSCGRG00001005696) #17	Zcchc4 (ENSCGRG00001014205) #18	ENSCGRG00001016709	Anapc4 (ENSCGRG00001021562) #19	Slc34a2 (ENSCGRG00001019379) #20	Sel1l3 (ENSCGRG00001023792) #21	Smim20 (ENSCGRG00001010352)	ENSCGRG00001010832	Rbpj (ENSCGRG00001016640) #22	Cckar (ENSCGRG00001015331) #23	Tbc1d19 (ENSCGRG00001021066) #24	ENSCGRG00001004312	Stim2 (ENSCGRG00001012517) #25	ENSCGRG00001002941	ENSCGRG00001005160	ENSCGRG00001012415	Pcdh7 (ENSCGRG00001017637)	ENSCGRG00001018983	ENSCGRG00001009672	Arap2 (ENSCGRG00001019683)	Dthd1 (ENSCGRG00001007560)	ENSCGRG00001015981	ENSCGRG00001005701	Nwd2 (ENSCGRG00001014796)
Rodentia_A	ANCESTRAL SPECIES	20	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00900000143434	ENSGT00940000157456	ENSGT00940000163662	ENSGT00940000162884
Sciuridae	ANCESTRAL SPECIES	19	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00900000143434	ENSGT00940000157456	ENSGT00940000163662	ENSGT00940000162884
Eurasian red squirrel	MODERN SPECIES	18	KCNIP4 (ENSSVLG00005015491)	ADGRA3 (ENSSVLG00005015123)	GBA3 (ENSSVLG00005014999) #8	PPARGC1A (ENSSVLG00005014549) #9	ENSSVLG00005014421 #10	SOD3 (ENSSVLG00005014382)	CCDC149 (ENSSVLG00005013936) #12	LGI2 (ENSSVLG00005013643) #13	SEPSECS (ENSSVLG00005013560) #14	ENSSVLG00005013482 #17	ZCCHC4 (ENSSVLG00005013382) #18	ANAPC4 (ENSSVLG00005013305) #19	SLC34A2 (ENSSVLG00005013163) #20	SEL1L3 (ENSSVLG00005012722) #21	SMIM20 (ENSSVLG00005012667)	RBPJ (ENSSVLG00005012303) #22	CCKAR (ENSSVLG00005012173) #23	TBC1D19 (ENSSVLG00005011905) #24	ENSSVLG00005011823	STIM2 (ENSSVLG00005011778) #25	ENSSVLG00005011737	ENSSVLG00005011695	ENSSVLG00005011631	ENSSVLG00005011572	PCDH7 (ENSSVLG00005011515)	ENSSVLG00005011423	ARAP2 (ENSSVLG00005010880)	DTHD1 (ENSSVLG00005010509)	ENSSVLG00005010441	ENSSVLG00005010374	C4orf19 (ENSSVLG00005010352)
Marmotini	ANCESTRAL SPECIES	26	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800.e #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00900000143434	ENSGT00940000157456	ENSGT00940000163662	ENSGT00940000162884
Alpin marmot	MODERN SPECIES	9	KCNIP4 (ENSMMMG00000017078)	ADGRA3 (ENSMMMG00000017146)	GBA3 (ENSMMMG00000017174) #8	PPARGC1A (ENSMMMG00000017190) #9	ENSMMMG00000017220	DHX15 (ENSMMMG00000017227) #10	CCDC149 (ENSMMMG00000017248) #12	LGI2 (ENSMMMG00000017262) #13	SEPSECS (ENSMMMG00000017270) #14	PI4K2B (ENSMMMG00000017289) #17	ZCCHC4 (ENSMMMG00000017301) #18	ANAPC4 (ENSMMMG00000017319) #19	SLC34A2 (ENSMMMG00000017344) #20	SEL1L3 (ENSMMMG00000017356) #21	SMIM20 (ENSMMMG00000017386)	RBPJ (ENSMMMG00000017407) #22	CCKAR (ENSMMMG00000017438) #23	STIM2 (ENSMMMG00000017470) #25	ENSMMMG00000017503	ENSMMMG00000017519	ARAP2 (ENSMMMG00000017527)	DTHD1 (ENSMMMG00000017544)	NWD2 (ENSMMMG00000017559)	ENSMMMG00000017574	C4orf19 (ENSMMMG00000017577)	RELL1 (ENSMMMG00000017587)	PGM2 (ENSMMMG00000017606)	TBC1D1 (ENSMMMG00000017620)	ENSMMMG00000017716	KLF3 (ENSMMMG00000017721)	TLR10 (ENSMMMG00000017725)
Marmotini_b	ANCESTRAL SPECIES	33	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800.e #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b.g #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25
Arctic ground squirrel	MODERN SPECIES	9	ADGRA3 (ENSUPAG00010018174)	GBA3 (ENSUPAG00010018197) #8	PPARGC1A (ENSUPAG00010018212) #9	ENSUPAG00010018232	DHX15 (ENSUPAG00010018237) #10	SOD3 (ENSUPAG00010018252)	CCDC149 (ENSUPAG00010018257) #12	LGI2 (ENSUPAG00010018269) #13	SEPSECS (ENSUPAG00010018289) #14	PI4K2B (ENSUPAG00010018304) #17	ZCCHC4 (ENSUPAG00010018312) #18	ANAPC4 (ENSUPAG00010018324) #19	ENSUPAG00010018366 #20	SEL1L3 (ENSUPAG00010018378) #21	SMIM20 (ENSUPAG00010018408)	RBPJ (ENSUPAG00010018415) #22	CCKAR (ENSUPAG00010018463) #23	TBC1D19 (ENSUPAG00010018475) #24	STIM2 (ENSUPAG00010018502) #25
Squirrel	MODERN SPECIES	77	PACRGL (ENSSTOG00000014307)	KCNIP4 (ENSSTOG00000014315)	ADGRA3 (ENSSTOG00000008272)	GBA3 (ENSSTOG00000030967) #8	PPARGC1A (ENSSTOG00000012522) #9	ENSSTOG00000015000 #10	ENSSTOG00000025245 #12	LGI2 (ENSSTOG00000002210) #13	SEPSECS (ENSSTOG00000013399) #14	PI4K2B (ENSSTOG00000016146) #17	ZCCHC4 (ENSSTOG00000023603) #18	ANAPC4 (ENSSTOG00000016156) #19	SLC34A2 (ENSSTOG00000012971) #20	SEL1L3 (ENSSTOG00000010415) #21	SMIM20 (ENSSTOG00000004810)	RBPJ (ENSSTOG00000004547) #22	CCKAR (ENSSTOG00000028796) #23	TBC1D19 (ENSSTOG00000024301) #24	STIM2 (ENSSTOG00000014072) #25
Hystricomorpha	ANCESTRAL SPECIES	26	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201
Naked mole-rat female	MODERN SPECIES	1	PPARGC1A (ENSHGLG00000007022) #9	DHX15 (ENSHGLG00000006630) #10	SOD3 (ENSHGLG00000047646)	CCDC149 (ENSHGLG00000045906) #12	LGI2 (ENSHGLG00000034196) #13	ENSHGLG00000031983	SEPSECS (ENSHGLG00000005236) #14	PI4K2B (ENSHGLG00000005194) #17	ZCCHC4 (ENSHGLG00000005154) #18	ENSHGLG00000039602	ANAPC4 (ENSHGLG00000004987) #19	SLC34A2 (ENSHGLG00000012163) #20	SEL1L3 (ENSHGLG00000011887) #21	ENSHGLG00000042802	ENSHGLG00000048407	RBPJ (ENSHGLG00000010901) #22	CCKAR (ENSHGLG00000041648) #23	TBC1D19 (ENSHGLG00000009465) #24	ENSHGLG00000009110 #25	ENSHGLG00000038509	ENSHGLG00000008412	ENSHGLG00000020704	ENSHGLG00000038050	ENSHGLG00000042856	ENSHGLG00000007929	ENSHGLG00000032804	ENSHGLG00000008642	ARAP2 (ENSHGLG00000001750)	DTHD1 (ENSHGLG00000006344)	ENSHGLG00000000242	ENSHGLG00000037767
Hystricomorpha_a	ANCESTRAL SPECIES	23	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201
Guinea pig	MODERN SPECIES	50	ADGRA3 (ENSCPOG00000014179)	GBA3 (ENSCPOG00000024273) #8	PPARGC1A (ENSCPOG00000001518) #9	DHX15 (ENSCPOG00000006467) #10	SOD3 (ENSCPOG00000035072)	CCDC149 (ENSCPOG00000008895) #12	LGI2 (ENSCPOG00000024161) #13	SEPSECS (ENSCPOG00000035974) #14	PI4K2B (ENSCPOG00000015398) #17	ZCCHC4 (ENSCPOG00000011477) #18	ANAPC4 (ENSCPOG00000013122) #19	SLC34A2 (ENSCPOG00000024165) #20	SEL1L3 (ENSCPOG00000001037) #21	SMIM20 (ENSCPOG00000007684)	ENSCPOG00000040682	RBPJ (ENSCPOG00000007041) #22	CCKAR (ENSCPOG00000007046) #23	TBC1D19 (ENSCPOG00000003940) #24	STIM2 (ENSCPOG00000003408) #25	PCDH7 (ENSCPOG00000009659)	ARAP2 (ENSCPOG00000003037)	DTHD1 (ENSCPOG00000012919)
Hystricomorpha_b	ANCESTRAL SPECIES	37	ENSGT00940000159756	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201
Degu	MODERN SPECIES	47	KCNIP4 (ENSODEG00000009132)	ADGRA3 (ENSODEG00000008912)	GBA3 (ENSODEG00000007983) #8	ENSODEG00000008409 #9	ENSODEG00000008891 #10	ENSODEG00000008421 #12	LGI2 (ENSODEG00000009206) #13	SEPSECS (ENSODEG00000010607) #14	PI4K2B (ENSODEG00000008999) #17	ENSODEG00000007449 #18	ENSODEG00000006972	ENSODEG00000019525	SLC34A2 (ENSODEG00000010839) #20	SEL1L3 (ENSODEG00000008196) #21	ENSODEG00000007321	ENSODEG00000007277 #22	CCKAR (ENSODEG00000007359) #23	TBC1D19 (ENSODEG00000007019) #24	ENSODEG00000008773 #25	ENSODEG00000006518 #25	ENSODEG00000019413	ENSODEG00000006666	ENSODEG00000007600	PCDH7 (ENSODEG00000007387)	ENSODEG00000006993	ENSODEG00000019660	ARAP2 (ENSODEG00000006699)	DTHD1 (ENSODEG00000007001)
Long-tailed chinchilla	MODERN SPECIES	150								SEPSECS (ENSCLAG00000001790) #14	PI4K2B (ENSCLAG00000001759) #17	ZCCHC4 (ENSCLAG00000003884) #18	ANAPC4 (ENSCLAG00000003544) #19	ENSCLAG00000002958	SLC34A2 (ENSCLAG00000002636) #20	SEL1L3 (ENSCLAG00000002362) #21	SMIM20 (ENSCLAG00000002089)	RBPJ (ENSCLAG00000002065) #22	CCKAR (ENSCLAG00000001729) #23	TBC1D19 (ENSCLAG00000001699) #24	STIM2 (ENSCLAG00000002849) #25	PCDH7 (ENSCLAG00000002605)	ARAP2 (ENSCLAG00000012467)	DTHD1 (ENSCLAG00000011952)	NWD2 (ENSCLAG00000010818)	C4orf19 (ENSCLAG00000010706)	RELL1 (ENSCLAG00000010401)	PGM2 (ENSCLAG00000010266)	TBC1D1 (ENSCLAG00000002236)	KLF3 (ENSCLAG00000004459)	TLR10 (ENSCLAG00000004336)	TLR1 (ENSCLAG00000017579)	TLR6 (ENSCLAG00000017630)
Lagomorpha	ANCESTRAL SPECIES	3	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT01030000234945	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000163662	ENSGT00940000162884
Pika	MODERN SPECIES	2489													SLC34A2 (ENSOPRG00000001382) #20	SEL1L3 (ENSOPRG00000001401) #21	SMIM20 (ENSOPRG00000001454)	RBPJ (ENSOPRG00000001466) #22	CCKAR (ENSOPRG00000001491) #23	TBC1D19 (ENSOPRG00000001504) #24
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES	11	ENSOCUG00000000919	GBA3 (ENSOCUG00000005568) #8	PPARGC1A (ENSOCUG00000014668) #9	DHX15 (ENSOCUG00000003026) #10	ENSOCUG00000019163	ENSOCUG00000007460	CCDC149 (ENSOCUG00000007463) #12	LGI2 (ENSOCUG00000004764) #13	SEPSECS (ENSOCUG00000008262) #14	PI4K2B (ENSOCUG00000015972) #17	ZCCHC4 (ENSOCUG00000015990) #18	ANAPC4 (ENSOCUG00000016004) #19	SLC34A2 (ENSOCUG00000002944) #20	SEL1L3 (ENSOCUG00000017195) #21	SMIM20 (ENSOCUG00000034394)	RBPJ (ENSOCUG00000013449) #22	CCKAR (ENSOCUG00000013457) #23	TBC1D19 (ENSOCUG00000013465) #24	STIM2 (ENSOCUG00000014185) #25	ENSOCUG00000038061	ENSOCUG00000026856	ENSOCUG00000039608	ENSOCUG00000030289	ENSOCUG00000035672	PCDH7 (ENSOCUG00000000290)	ENSOCUG00000023563	ENSOCUG00000010124	ENSOCUG00000036228	ARAP2 (ENSOCUG00000015669)	DTHD1 (ENSOCUG00000001098)	NWD2 (ENSOCUG00000012238)
Rabbit	MODERN SPECIES	11	ENSOCUG00000022570	QPCT (ENSOCUG00000007416)	PRKD3 (ENSOCUG00000007411)	ENSOCUG00000007239	CEBPZ (ENSOCUG00000007230)	ENSOCUG00000029893	SULT6B1 (ENSOCUG00000007229)	EIF2AK2 (ENSOCUG00000007223)	GPATCH11 (ENSOCUG00000007217)	HEATR5B (ENSOCUG00000007205)	STRN (ENSOCUG00000007258)	VIT (ENSOCUG00000007249)	FEZ2 (ENSOCUG00000014879)	CRIM1 (ENSOCUG00000001595)	ENSOCUG00000032042	ENSOCUG00000038657 #22	FAM98A (ENSOCUG00000015457)	RASGRP3 (ENSOCUG00000015439)	ENSOCUG00000036940	LTBP1 (ENSOCUG00000009598)	TTC27 (ENSOCUG00000009586)	BIRC6 (ENSOCUG00000006600)	YIPF4 (ENSOCUG00000007591)	SLC30A6 (ENSOCUG00000005403)	ENSOCUG00000038042	SPAST (ENSOCUG00000010252)	ENSOCUG00000017877	ENSOCUG00000005878	ENSOCUG00000036681	SRD5A2 (ENSOCUG00000001236)	XDH (ENSOCUG00000001230)
Laurasiatheria	ANCESTRAL SPECIES	11	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00860000135660	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000165320	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT01030000235076	ENSGT00940000169973	ENSGT00940000157949
Eulipotyphla	ANCESTRAL SPECIES	2118																ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23
Hedgehog	MODERN SPECIES	6316																RBPJ (ENSEEUG00000009686) #22	CCKAR (ENSEEUG00000009776) #23
Common shrew	MODERN SPECIES	4916																RBPJ (ENSSARG00000001169) #22
Laurasiatheria_a	ANCESTRAL SPECIES	8	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00860000135660	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000165320	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT01030000235076	ENSGT00940000169973	ENSGT00940000157949
Laurasiatheria_b	ANCESTRAL SPECIES	8	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00860000135660	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000165320	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT01030000235076	ENSGT00940000169973	ENSGT00940000157949
Carnivora	ANCESTRAL SPECIES	5	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00970000193677	ENSGT00950000182895.a.a.a.a.a.a.b.a.a.c.b	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00860000135660	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT01030000235076	ENSGT00940000169973
Felidae	ANCESTRAL SPECIES	4	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00970000193677	ENSGT00950000182895.a.a.a.a.a.a.b.a.a.c.b	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00860000135660	ENSGT00390000016760.c.b	ENSGT00390000007888.c.b.a	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247
Cat	MODERN SPECIES	235	ADGRA3 (ENSFCAG00000027302)	GBA3 (ENSFCAG00000031717) #8	PPARGC1A (ENSFCAG00000000043) #9	ENSFCAG00000040987	DHX15 (ENSFCAG00000009234) #10	SOD3 (ENSFCAG00000045310)	CCDC149 (ENSFCAG00000015383) #12	LGI2 (ENSFCAG00000032361) #13	SEPSECS (ENSFCAG00000023094) #14	PI4K2B (ENSFCAG00000025109) #17	ZCCHC4 (ENSFCAG00000023396) #18	ANAPC4 (ENSFCAG00000042946) #19	SLC34A2 (ENSFCAG00000029965) #20	SEL1L3 (ENSFCAG00000013720) #21	SMIM20 (ENSFCAG00000046718)	RBPJ (ENSFCAG00000030363) #22	CCKAR (ENSFCAG00000007718) #23	CAR1 (ENSFCAG00000049200)	ENSFCAG00000028607	TBC1D19 (ENSFCAG00000029340) #24	STIM2 (ENSFCAG00000025940) #25	PCDH7 (ENSFCAG00000014975)	ENSFCAG00000032725	ENSFCAG00000052913	ENSFCAG00000048265	ENSFCAG00000033885	ARAP2 (ENSFCAG00000004726)	DTHD1 (ENSFCAG00000014534)	NWD2 (ENSFCAG00000031252)	ENSFCAG00000050369	CB1H4orf19 (ENSFCAG00000000031)
Panthera	ANCESTRAL SPECIES	5	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00970000193677	ENSGT00950000182895.a.a.a.a.a.a.b.a.a.c.b	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00860000135660	ENSGT00390000016760.c.b	ENSGT00390000007888.c.b.a	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247
Tiger	MODERN SPECIES	349						DHX15 (ENSPTIG00000010037) #10	CCDC149 (ENSPTIG00000009661) #12	LGI2 (ENSPTIG00000009350) #13	SEPSECS (ENSPTIG00000009229) #14	PI4K2B (ENSPTIG00000008971) #17	ZCCHC4 (ENSPTIG00000008749) #18	ANAPC4 (ENSPTIG00000008519) #19	SLC34A2 (ENSPTIG00000008160) #20	SEL1L3 (ENSPTIG00000007261) #21	ENSPTIG00000007083	RBPJ (ENSPTIG00000006126) #22	CCKAR (ENSPTIG00000005490) #23	ENSPTIG00000005280	TBC1D19 (ENSPTIG00000002885) #24	STIM2 (ENSPTIG00000001265) #25
Panthera_a	ANCESTRAL SPECIES	2	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00970000193677	ENSGT00950000182895.a.a.a.a.a.a.b.a.a.c.b	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00860000135660	ENSGT00390000016760.c.b	ENSGT00390000007888.c.b.a	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247
leopard	MODERN SPECIES	25	GBA3 (ENSPPRG00000000195) #8	PPARGC1A (ENSPPRG00000001711) #9	ENSPPRG00000020851	DHX15 (ENSPPRG00000002164) #10	SOD3 (ENSPPRG00000020880)	CCDC149 (ENSPPRG00000005074) #12	LGI2 (ENSPPRG00000005473) #13	SEPSECS (ENSPPRG00000005618) #14	PI4K2B (ENSPPRG00000006151) #17	ZCCHC4 (ENSPPRG00000006329) #18	ANAPC4 (ENSPPRG00000006664) #19	SLC34A2 (ENSPPRG00000008628) #20	ENSPPRG00000009004	SEL1L3 (ENSPPRG00000018369) #21	SMIM20 (ENSPPRG00000018812)	RBPJ (ENSPPRG00000024386) #22	CCKAR (ENSPPRG00000024018) #23	ENSPPRG00000023897	TBC1D19 (ENSPPRG00000023259) #24	STIM2 (ENSPPRG00000000768) #25	PCDH7 (ENSPPRG00000001154)	ENSPPRG00000021125
lion	MODERN SPECIES	4	ADGRA3 (ENSPLOG00000015872)	GBA3 (ENSPLOG00000015752) #8	PPARGC1A (ENSPLOG00000015341) #9	ENSPLOG00000015280	DHX15 (ENSPLOG00000015238) #10	SOD3 (ENSPLOG00000015212)	CCDC149 (ENSPLOG00000014724) #12	LGI2 (ENSPLOG00000014551) #13	SEPSECS (ENSPLOG00000014441) #14	PI4K2B (ENSPLOG00000014324) #17	ZCCHC4 (ENSPLOG00000014263) #18	ANAPC4 (ENSPLOG00000014198) #19	SLC34A2 (ENSPLOG00000013975) #20	SEL1L3 (ENSPLOG00000013599) #21	ENSPLOG00000013526	RBPJ (ENSPLOG00000013224) #22	CCKAR (ENSPLOG00000013057) #23	ENSPLOG00000013017	ENSPLOG00000012957	TBC1D19 (ENSPLOG00000012764) #24	STIM2 (ENSPLOG00000012668) #25	PCDH7 (ENSPLOG00000012591)	ENSPLOG00000012507	ENSPLOG00000012476	ENSPLOG00000012458	ENSPLOG00000012421	ENSPLOG00000012384	ARAP2 (ENSPLOG00000012184)	DTHD1 (ENSPLOG00000011795)	ENSPLOG00000011702	CSN2 (ENSPLOG00000011567)
Caniformia	ANCESTRAL SPECIES	7	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00970000193677	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00860000135660	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT01030000235076	ENSGT00940000169973	ENSGT00940000157949
Caniformia_b	ANCESTRAL SPECIES	5	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00970000193677	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00860000135660	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT01030000235076	ENSGT00940000169973	ENSGT00940000157949
Mustelinae	ANCESTRAL SPECIES	112	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00970000193677	ENSGT00390000000214.a.b #25
Ferret	MODERN SPECIES	252	ADGRA3 (ENSMPUG00000016741)	GBA3 (ENSMPUG00000016738) #8	PPARGC1A (ENSMPUG00000016736) #9	DHX15 (ENSMPUG00000016735) #10	SOD3 (ENSMPUG00000020131)	CCDC149 (ENSMPUG00000016734) #12	LGI2 (ENSMPUG00000016733) #13	SEPSECS (ENSMPUG00000016732) #14	PI4K2B (ENSMPUG00000016729) #17	ZCCHC4 (ENSMPUG00000016727) #18	ANAPC4 (ENSMPUG00000016724) #19	SLC34A2 (ENSMPUG00000016722) #20	SEL1L3 (ENSMPUG00000016719) #21	ENSMPUG00000016717	ENSMPUG00000016716	RBPJ (ENSMPUG00000016715) #22	CCKAR (ENSMPUG00000016713) #23	TBC1D19 (ENSMPUG00000016711) #24	STIM2 (ENSMPUG00000016709) #25
American mink	MODERN SPECIES	32	ADGRA3 (ENSNVIG00000012904)	ENSNVIG00000012944 #8	PPARGC1A (ENSNVIG00000012965) #9	DHX15 (ENSNVIG00000013069) #10	SOD3 (ENSNVIG00000013084)	CCDC149 (ENSNVIG00000013098) #12	LGI2 (ENSNVIG00000013203) #13	SEPSECS (ENSNVIG00000013227) #14	ENSNVIG00000013245	PI4K2B (ENSNVIG00000013261) #17	ZCCHC4 (ENSNVIG00000013287) #18	ANAPC4 (ENSNVIG00000013320) #19	SLC34A2 (ENSNVIG00000013390) #20	SEL1L3 (ENSNVIG00000013431) #21	SMIM20 (ENSNVIG00000013500)	RBPJ (ENSNVIG00000013517) #22	ENSNVIG00000013579	CCKAR (ENSNVIG00000013587) #23	TBC19 (ENSNVIG00000013610) #24	ENSNVIG00000013701	STIM2 (ENSNVIG00000013721) #25
Ursidae	ANCESTRAL SPECIES	29	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00950000182895.a.a.a.a.a.a.b.a.a.c.b	ENSGT00390000015965 #24	ENSGT00970000193677	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00860000135660	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456
Giant Panda	MODERN SPECIES	2	KCNIP4 (ENSAMEG00000006445)	ADGRA3 (ENSAMEG00000006461)	GBA3 (ENSAMEG00000006494) #8	PPARGC1A (ENSAMEG00000010421) #9	DHX15 (ENSAMEG00000010482) #10	SOD3 (ENSAMEG00000023550)	CCDC149 (ENSAMEG00000008440) #12	LGI2 (ENSAMEG00000008417) #13	SEPSECS (ENSAMEG00000014700) #14	PI4K2B (ENSAMEG00000014735) #17	ZCCHC4 (ENSAMEG00000027841) #18	ANAPC4 (ENSAMEG00000018114) #19	SLC34A2 (ENSAMEG00000018105) #20	SEL1L3 (ENSAMEG00000018094) #21	SMIM20 (ENSAMEG00000018092)	RBPJ (ENSAMEG00000018082) #22	CCKAR (ENSAMEG00000014732) #23	CAR1 (ENSAMEG00000031321)	ENSAMEG00000023854	TBC1D19 (ENSAMEG00000014677) #24	STIM2 (ENSAMEG00000014649) #25	PCDH7 (ENSAMEG00000026428)	ENSAMEG00000029477	ARAP2 (ENSAMEG00000005492)	DTHD1 (ENSAMEG00000005528)	NWD2 (ENSAMEG00000024908)	C4orf19 (ENSAMEG00000011277)	RELL1 (ENSAMEG00000011264)	PGM2 (ENSAMEG00000011214)	TBC1D1 (ENSAMEG00000011195)	KLF3 (ENSAMEG00000010056)
Ursus	ANCESTRAL SPECIES	180	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00970000193677	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00860000135660
American black bear	MODERN SPECIES	6118																RBPJ (ENSUAMG00000016450) #22	CCKAR (ENSUAMG00000016444) #23
Polar bear	MODERN SPECIES	128	KCNIP4 (ENSUMAG00000003497)	ADGRA3 (ENSUMAG00000003527)	GBA3 (ENSUMAG00000003537) #8	PPARGC1A (ENSUMAG00000003557) #9	DHX15 (ENSUMAG00000003647) #10	ENSUMAG00000003656	CCDC149 (ENSUMAG00000003673) #12	LGI2 (ENSUMAG00000003678) #13	SEPSECS (ENSUMAG00000003690) #14	PI4K2B (ENSUMAG00000003697) #17	ZCCHC4 (ENSUMAG00000003758) #18	ANAPC4 (ENSUMAG00000003767) #19	SLC34A2 (ENSUMAG00000003792) #20	SEL1L3 (ENSUMAG00000003892) #21	SMIM20 (ENSUMAG00000004164)	RBPJ (ENSUMAG00000004171) #22	CCKAR (ENSUMAG00000004192) #23	ENSUMAG00000004204	TBC1D19 (ENSUMAG00000004209) #24	ENSUMAG00000004223	STIM2 (ENSUMAG00000004243) #25	ENSUMAG00000004345	ENSUMAG00000004356	ENSUMAG00000004367	ENSUMAG00000004368	DSEL (ENSUMAG00000004377)	TMX3 (ENSUMAG00000004385)	CCDC102B (ENSUMAG00000004396)	DOK6 (ENSUMAG00000004418)	CD226 (ENSUMAG00000004424)	ENSUMAG00000004435
Canidae	ANCESTRAL SPECIES	21	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00970000193677	ENSGT00390000000214.a.b #25	ENSGT01030000234945	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000163662
Red fox	MODERN SPECIES	1	ADGRA3 (ENSVVUG00000013329)	GBA3 (ENSVVUG00000013354) #8	ENSVVUG00000013361	PPARGC1A (ENSVVUG00000013365) #9	ENSVVUG00000013388	DHX15 (ENSVVUG00000013395) #10	CCDC149 (ENSVVUG00000013407) #12	LGI2 (ENSVVUG00000013458) #13	SEPSECS (ENSVVUG00000013476) #14	PI4K2B (ENSVVUG00000013490) #17	ZCCHC4 (ENSVVUG00000013506) #18	ANAPC4 (ENSVVUG00000013531) #19	SLC34A2 (ENSVVUG00000013552) #20	SEL1L3 (ENSVVUG00000013804) #21	SMIM20 (ENSVVUG00000013812)	RBPJ (ENSVVUG00000013837) #22	CCKAR (ENSVVUG00000013858) #23	TBC1D19 (ENSVVUG00000013875) #24	ENSVVUG00000013949	STIM2 (ENSVVUG00000013958) #25	ENSVVUG00000014058	PCDH7 (ENSVVUG00000014104)	ENSVVUG00000014123	ENSVVUG00000014202	ENSVVUG00000014241	ENSVVUG00000014337	ARAP2 (ENSVVUG00000014348)	DTHD1 (ENSVVUG00000014412)	NWD2 (ENSVVUG00000014429)	ENSVVUG00000014438	RELL1 (ENSVVUG00000014443)
Canis_lupus	ANCESTRAL SPECIES	23	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556.i #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00970000193677	ENSGT00390000000214.a.b #25	ENSGT01030000234945	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000163662
Dingo	MODERN SPECIES	138	GBA3 (ENSCAFG00020027241) #8	PPARGC1A (ENSCAFG00020027242) #9	ENSCAFG00020027244	DHX15 (ENSCAFG00020027245) #10	SOD3 (ENSCAFG00020027246)	CCDC149 (ENSCAFG00020027247) #12	LGI2 (ENSCAFG00020027248) #13	SEPSECS (ENSCAFG00020027249) #14	PI4K2B (ENSCAFG00020027250) #17	ENSCAFG00020027252 #18	ENSCAFG00020027253 #18	ANAPC4 (ENSCAFG00020027256) #19	SLC34A2 (ENSCAFG00020027270) #20	SEL1L3 (ENSCAFG00020027291) #21	ENSCAFG00020027299	RBPJ (ENSCAFG00020027303) #22	CCKAR (ENSCAFG00020027326) #23	TBC1D19 (ENSCAFG00020027330) #24	ENSCAFG00020027342	STIM2 (ENSCAFG00020027345) #25	ENSCAFG00020027346	ENSCAFG00020027359	PCDH7 (ENSCAFG00020027362)	ENSCAFG00020027369	ARAP2 (ENSCAFG00020027371)	DTHD1 (ENSCAFG00020027385)	NWD2 (ENSCAFG00020027393)	RELL1 (ENSCAFG00020027397)	PGM2 (ENSCAFG00020027401)	TBC1D1 (ENSCAFG00020027410)	KLF3 (ENSCAFG00020027419)
Dog	MODERN SPECIES	22	ADGRA3 (ENSCAFG00845008840)	GBA3 (ENSCAFG00845008730) #8	PPARGC1A (ENSCAFG00845008311) #9	DHX15 (ENSCAFG00845007821) #10	SOD3 (ENSCAFG00845007800)	CCDC149 (ENSCAFG00845007671) #12	LGI2 (ENSCAFG00845007610) #13	SEPSECS (ENSCAFG00845007550) #14	PI4K2B (ENSCAFG00845007474) #17	ZCCHC4 (ENSCAFG00845007308) #18	ANAPC4 (ENSCAFG00845007014) #19	SLC34A2 (ENSCAFG00845006845) #20	SEL1L3 (ENSCAFG00845006276) #21	SMIM20 (ENSCAFG00845006127)	ENSCAFG00845006105	RBPJ (ENSCAFG00845005977) #22	CCKAR (ENSCAFG00845005880) #23	CAR1 (ENSCAFG00845005825)	TBC1D19 (ENSCAFG00845005743) #24	STIM2 (ENSCAFG00845005670) #25	ENSCAFG00845005634	ENSCAFG00845005572	ENSCAFG00845005559	PCDH7 (ENSCAFG00845005515)	ENSCAFG00845005487	ARAP2 (ENSCAFG00845005336)	DTHD1 (ENSCAFG00845005244)	ENSCAFG00845005226	NWD2 (ENSCAFG00845005206)	ENSCAFG00845005184	RELL1 (ENSCAFG00845005126)
Laurasiatheria_c	ANCESTRAL SPECIES	8	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000165320	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000163662	ENSGT00940000162884
Chiroptera	ANCESTRAL SPECIES	9	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201
Megabat	MODERN SPECIES	2083																RBPJ (ENSPVAG00000014199) #22	CCKAR (ENSPVAG00000014200) #23	TBC1D19 (ENSPVAG00000014201) #24	STIM2 (ENSPVAG00000014202) #25
Microchiroptera	ANCESTRAL SPECIES	10	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201
Microbat	MODERN SPECIES	1049	GBA3 (ENSMLUG00000009213) #8	ENSMLUG00000027157	ENSMLUG00000027956	PPARGC1A (ENSMLUG00000016307) #9	DHX15 (ENSMLUG00000001617) #10	SOD3 (ENSMLUG00000014742)	CCDC149 (ENSMLUG00000014745) #12	LGI2 (ENSMLUG00000005887) #13	SEPSECS (ENSMLUG00000005883) #14	PI4K2B (ENSMLUG00000001044) #17	ZCCHC4 (ENSMLUG00000004225) #18	ANAPC4 (ENSMLUG00000004233) #19	ENSMLUG00000000694 #20	SEL1L3 (ENSMLUG00000000702) #21	SMIM20 (ENSMLUG00000000713)	RBPJ (ENSMLUG00000017187) #22	CCKAR (ENSMLUG00000017191) #23	ENSMLUG00000023226	TBC1D19 (ENSMLUG00000017193) #24	STIM2 (ENSMLUG00000017200) #25
Greater horseshoe bat	MODERN SPECIES	23	PPARGC1A (ENSRFEG00010001741) #9	ENSRFEG00010001699	DHX15 (ENSRFEG00010001673) #10	SOD3 (ENSRFEG00010001657)	CCDC149 (ENSRFEG00010001512) #12	LGI2 (ENSRFEG00010001447) #13	SEPSECS (ENSRFEG00010001416) #14	PI4K2B (ENSRFEG00010001371) #17	ZCCHC4 (ENSRFEG00010001312) #18	ANAPC4 (ENSRFEG00010001248) #19	SLC34A2 (ENSRFEG00010001179) #20	SEL1L3 (ENSRFEG00010001115) #21	SMIM20 (ENSRFEG00010001089)	ENSRFEG00010001077	ENSRFEG00010001068	RBPJ (ENSRFEG00010000987) #22	CCKAR (ENSRFEG00010000933) #23	TBC1D19 (ENSRFEG00010000865) #24	STIM2 (ENSRFEG00010000812) #25	ENSRFEG00010000792	PCDH7 (ENSRFEG00010000761)	ENSRFEG00010000734	ENSRFEG00010000675	DTHD1 (ENSRFEG00010000588)	NWD2 (ENSRFEG00010000529)	C4orf19 (ENSRFEG00010000507)	RELL1 (ENSRFEG00010000481)	PGM2 (ENSRFEG00010000444)	TBC1D1 (ENSRFEG00010000328)	KLF3 (ENSRFEG00010000276)	TLR10 (ENSRFEG00010000243)
Equus	ANCESTRAL SPECIES	12	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000165320	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000163662	ENSGT00940000162884
Horse	MODERN SPECIES	22	GBA3 (ENSECAG00000014346) #8	PPARGC1A (ENSECAG00000009164) #9	DHX15 (ENSECAG00000023224) #10	ENSECAG00000045825	SOD3 (ENSECAG00000035543)	CCDC149 (ENSECAG00000022451) #12	LGI2 (ENSECAG00000016152) #13	SEPSECS (ENSECAG00000009932) #14	PI4K2B (ENSECAG00000008251) #17	ZCCHC4 (ENSECAG00000007352) #18	ANAPC4 (ENSECAG00000017692) #19	SLC34A2 (ENSECAG00000013315) #20	SEL1L3 (ENSECAG00000000638) #21	SMIM20 (ENSECAG00000041550)	ENSECAG00000002201	RBPJ (ENSECAG00000019257) #22	CCKAR (ENSECAG00000017266) #23	TBC1D19 (ENSECAG00000011680) #24	STIM2 (ENSECAG00000009481) #25	ENSECAG00000054073	ENSECAG00000027755	PCDH7 (ENSECAG00000000599)	ARAP2 (ENSECAG00000018069)	DTHD1 (ENSECAG00000017513)	ENSECAG00000050605	NWD2 (ENSECAG00000017312)	C3H4orf19 (ENSECAG00000017301)	RELL1 (ENSECAG00000016126)	PGM2 (ENSECAG00000009090)	TBC1D1 (ENSECAG00000022162)	KLF3 (ENSECAG00000021855)
Donkey	MODERN SPECIES	22	TMC1 (ENSEASG00005036859)	ZFAND5 (ENSEASG00005009586)	ENSEASG00005009587	ENSEASG00005007984 #9	ENSEASG00005007991 #10	SOD3 (ENSEASG00005033891)	CCDC149 (ENSEASG00005008000) #12	LGI2 (ENSEASG00005008001) #13	SEPSECS (ENSEASG00005008003) #14	PI4K2B (ENSEASG00005008006) #17	ZCCHC4 (ENSEASG00005008011) #18	ANAPC4 (ENSEASG00005008014) #19	SLC34A2 (ENSEASG00005008016) #20	SEL1L3 (ENSEASG00005008020) #21	SMIM20 (ENSEASG00005024155)	RBPJ (ENSEASG00005008027) #22	CCKAR (ENSEASG00005038229) #23	TBC1D19 (ENSEASG00005008046) #24	STIM2 (ENSEASG00005008051) #25	ENSEASG00005008057	PCDH7 (ENSEASG00005008070)	ARAP2 (ENSEASG00005008083)	DTHD1 (ENSEASG00005008101)	NWD2 (ENSEASG00005008108)	C4orf19 (ENSEASG00005025129)	RELL1 (ENSEASG00005008112)	ENSEASG00005035380	ENSEASG00005008115	TBC1D1 (ENSEASG00005008118)	KLF3 (ENSEASG00005008124)	TLR10 (ENSEASG00005008127)
Artiodactyla	ANCESTRAL SPECIES	12	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00860000135660	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT01030000235076	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000163662
Suina	ANCESTRAL SPECIES	33	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00940000155145.qb	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.b #25	ENSGT00390000000214.a.b.a #25	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT01030000235076	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000163662
Chacoan peccary	MODERN SPECIES	960	GBA3 (ENSCWAG00000021575) #8	PPARGC1A (ENSCWAG00000021590) #9	ENSCWAG00000021624	DHX15 (ENSCWAG00000021627) #10	SOD3 (ENSCWAG00000021634)	CCDC149 (ENSCWAG00000021648) #12	LGI2 (ENSCWAG00000011876) #13	SEPSECS (ENSCWAG00000011958) #14	PI4K2B (ENSCWAG00000011991) #17	ZCCHC4 (ENSCWAG00000012130) #18	ANAPC4 (ENSCWAG00000012255) #19	ENSCWAG00000012413	SLC34A2 (ENSCWAG00000012428) #20	SEL1L3 (ENSCWAG00000012543) #21	SMIM20 (ENSCWAG00000012836)	RBPJ (ENSCWAG00000012916) #22	CCKAR (ENSCWAG00000013281) #23	TBC1D19 (ENSCWAG00000013346) #24	STIM2 (ENSCWAG00000013559) #25	ENSCWAG00000013963	PCDH7 (ENSCWAG00000014012)	ARAP2 (ENSCWAG00000014103)	DTHD1 (ENSCWAG00000014349)	ENSCWAG00000014755	NWD2 (ENSCWAG00000014812)	C4orf19 (ENSCWAG00000014871)	RELL1 (ENSCWAG00000014911)	PGM2 (ENSCWAG00000014943)	ENSCWAG00000014989	TBC1D1 (ENSCWAG00000015011)	KLF3 (ENSCWAG00000015160)
Pig	MODERN SPECIES	16	GBA3 (ENSSSCG00000008754) #8	PPARGC1A (ENSSSCG00000029275) #9	ENSSSCG00000048996	DHX15 (ENSSSCG00000008756) #10	SOD3 (ENSSSCG00000028814)	CCDC149 (ENSSSCG00000023001) #12	LGI2 (ENSSSCG00000028927) #13	SEPSECS (ENSSSCG00000025315) #14	PI4K2B (ENSSSCG00000027340) #17	ZCCHC4 (ENSSSCG00000028581) #18	ANAPC4 (ENSSSCG00000025902) #19	ENSSSCG00000028632	SLC34A2 (ENSSSCG00000008758) #20	SEL1L3 (ENSSSCG00000022446) #21	ENSSSCG00000040571	RBPJ (ENSSSCG00000022155) #22	CCKAR (ENSSSCG00000061661) #23	TBC1D19 (ENSSSCG00000008761) #24	STIM2 (ENSSSCG00000008762) #25	ENSSSCG00000032413 #25	PCDH7 (ENSSSCG00000008765)	ENSSSCG00000008767	ARAP2 (ENSSSCG00000008768)	DTHD1 (ENSSSCG00000028471)	ENSSSCG00000008769	NWD2 (ENSSSCG00000008770)	C4orf19 (ENSSSCG00000008771)	RELL1 (ENSSSCG00000008772)	PGM2 (ENSSSCG00000008773)	TBC1D1 (ENSSSCG00000028983)	KLF3 (ENSSSCG00000036488)
Artiodactyla_a	ANCESTRAL SPECIES	12	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00860000135660	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT01030000235076	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000163662
Camelidae	ANCESTRAL SPECIES	22	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201
Alpaca	MODERN SPECIES	1806																RBPJ (ENSVPAG00000003620) #22	CCKAR (ENSVPAG00000003622) #23	TBC1D19 (ENSVPAG00000003623) #24	STIM2 (ENSVPAG00000003626) #25
Arabian camel	MODERN SPECIES	11	KCNIP4 (ENSCDRG00005017078)	ADGRA3 (ENSCDRG00005016284)	GBA3 (ENSCDRG00005016157) #8	PPARGC1A (ENSCDRG00005015905) #9	ENSCDRG00005015845	DHX15 (ENSCDRG00005015802) #10	CCDC149 (ENSCDRG00005015468) #12	LGI2 (ENSCDRG00005015363) #13	SEPSECS (ENSCDRG00005015323) #14	PI4K2B (ENSCDRG00005015238) #17	ZCCHC4 (ENSCDRG00005015096) #18	ANAPC4 (ENSCDRG00005014928) #19	SLC34A2 (ENSCDRG00005014773) #20	SEL1L3 (ENSCDRG00005014618) #21	SMIM20 (ENSCDRG00005014579)	RBPJ (ENSCDRG00005013306) #22	CCKAR (ENSCDRG00005013202) #23	TBC1D19 (ENSCDRG00005012784) #24	STIM2 (ENSCDRG00005011898) #25	PCDH7 (ENSCDRG00005011781)	ENSCDRG00005011725	ARAP2 (ENSCDRG00005011185)	DTHD1 (ENSCDRG00005010874)	NWD2 (ENSCDRG00005010804)	C4orf19 (ENSCDRG00005010758)	RELL1 (ENSCDRG00005010713)	ENSCDRG00005010670	PGM2 (ENSCDRG00005010550)	TBC1D1 (ENSCDRG00005010383)	KLF3 (ENSCDRG00005010297)	TLR10 (ENSCDRG00005010269)
Artiodactyla_b	ANCESTRAL SPECIES	16	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00860000135660	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT01030000235076	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000163662
Pecora	ANCESTRAL SPECIES	15	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398.f	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00860000135660	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949.c.b	ENSGT01030000235076	ENSGT00940000157949.c.a	ENSGT00940000157456
Yarkand deer	MODERN SPECIES	8	KCNIP4 (ENSCHYG00000020826)	ADGRA3 (ENSCHYG00000021204)	GBA3 (ENSCHYG00000021332) #8	PPARGC1A (ENSCHYG00000021428) #9	DHX15 (ENSCHYG00000021793) #10	SOD3 (ENSCHYG00000006891)	CCDC149 (ENSCHYG00000006926) #12	LGI2 (ENSCHYG00000007044) #13	SEPSECS (ENSCHYG00000007094) #14	PI4K2B (ENSCHYG00000007192) #17	ZCCHC4 (ENSCHYG00000007309) #18	ANAPC4 (ENSCHYG00000007432) #19	SEL1L3 (ENSCHYG00000007618) #21	ENSCHYG00000008010	ENSCHYG00000008030	RBPJ (ENSCHYG00000008084) #22	CCKAR (ENSCHYG00000008569) #23	TBC1D19 (ENSCHYG00000008635) #24	ENSCHYG00000009099	STIM2 (ENSCHYG00000009144) #25	ENSCHYG00000009335	ENSCHYG00000009369	PCDH7 (ENSCHYG00000009443)	ENSCHYG00000009498	ARAP2 (ENSCHYG00000009613)	DTHD1 (ENSCHYG00000010657)	NWD2 (ENSCHYG00000011104)	C4orf19 (ENSCHYG00000011230)	RELL1 (ENSCHYG00000011263)	ENSCHYG00000011389	PGM2 (ENSCHYG00000011452)
Percora_a	ANCESTRAL SPECIES	18	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398.f	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00860000135660	ENSGT00940000154788	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949.c.b	ENSGT01030000235076	ENSGT00940000157949.c.a
Siberian musk deer	MODERN SPECIES	1269	GBA3 (ENSMMSG00000014264) #8	PPARGC1A (ENSMMSG00000014222) #9	DHX15 (ENSMMSG00000014182) #10	SOD3 (ENSMMSG00000014159)	CCDC149 (ENSMMSG00000014088) #12	LGI2 (ENSMMSG00000014063) #13	SEPSECS (ENSMMSG00000014034) #14	PI4K2B (ENSMMSG00000013983) #17	ENSMMSG00000013962 #18	ANAPC4 (ENSMMSG00000013938) #19	ENSMMSG00000013917	SLC34A2 (ENSMMSG00000013857) #20	SEL1L3 (ENSMMSG00000013767) #21	ENSMMSG00000013746	ENSMMSG00000013732	RBPJ (ENSMMSG00000013568) #22	CCKAR (ENSMMSG00000013523) #23	ENSMMSG00000013500	TBC1D19 (ENSMMSG00000013351) #24	STIM2 (ENSMMSG00000013185) #25	ENSMMSG00000013164	ENSMMSG00000013140	ENSMMSG00000013133	PCDH7 (ENSMMSG00000013089)	ENSMMSG00000013078	ENSMMSG00000013060	ENSMMSG00000013043
Bovidae	ANCESTRAL SPECIES	18	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398.f	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00940000154788.ob	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000153446.a.a.f	ENSGT00940000156247	ENSGT00940000157949.c.b	ENSGT01030000235076	ENSGT00940000157949.c.a
Bovinae	ANCESTRAL SPECIES	15	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398.f.b.b	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00940000154788.nb.a	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00960000190968	ENSGT01100000263474.a.b.b.e.a.a.a.a.u.b.a	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000153446.a.a.f	ENSGT00940000156247	ENSGT01030000235076
Bos	ANCESTRAL SPECIES	15	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398.f.b.b	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.a.b.b.a.b.b.a.b.a.b	ENSGT00940000154788.nb.a	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00960000190968	ENSGT01100000263474.a.b.b.e.a.a.a.a.u.b.a	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000153446.a.a.f	ENSGT00940000156247
Bos_a	ANCESTRAL SPECIES	21	ENSGT00940000155133.b.n	ENSGT00550000075088.a.a.ob.b	ENSGT00390000006247.e.a	ENSGT00940000154222.d.b.d.g.a.a	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.a	ENSGT00530000063424.b	ENSGT00390000003791.a.a.a	ENSGT00940000157350	ENSGT00390000004874.a.b	ENSGT00390000002398.f.b.b	ENSGT00390000005197.a #22	ENSGT00940000153771.B	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914.l	ENSGT00940000154426.b.b.g.a	ENSGT00940000158010	ENSGT00950000185288	ENSGT00940000155816.b	ENSGT00940000159393.e
Domestic yak	DUPLICATION
Domestic yak	MODERN SPECIES	25	ENSBGRG00000016888	MAPK10 (ENSBGRG00000017007)	ARHGAP24 (ENSBGRG00000018148)	ENSBGRG00000018396	WDFY3 (ENSBGRG00000018444)	ENSBGRG00000020638	CDS1 (ENSBGRG00000020658)	NKX6-1 (ENSBGRG00000020754)	ENSBGRG00000020797	ABRAXAS1 (ENSBGRG00000020830)	MRPS18C (ENSBGRG00000020952)	ENSBGRG00000021080	ENSBGRG00000021100	HPSE (ENSBGRG00000021245)	COQ2 (ENSBGRG00000021631)	ENSBGRG00000021702 #22	ENSBGRG00000021746	PLAC8 (ENSBGRG00000021788)	COPS4 (ENSBGRG00000021845)	LIN54 (ENSBGRG00000021975)	THAP9 (ENSBGRG00000022302)	SEC31A (ENSBGRG00000022409)	SCD5 (ENSBGRG00000023293)	TMEM150C (ENSBGRG00000023370)	ENOPH1 (ENSBGRG00000023470)	ENSBGRG00000023638	RASGEF1B (ENSBGRG00000023927)	PRKG2 (ENSBGRG00000024304)	BMP3 (ENSBGRG00000024470)	CFAP299 (ENSBGRG00000024488)	FGF5 (ENSBGRG00000010381)
Domestic yak	MODERN SPECIES	25	GBA3 (ENSBGRG00000014640) #8	ENSBGRG00000014626	PPARGC1A (ENSBGRG00000014262) #9	DHX15 (ENSBGRG00000014165) #10	SOD3 (ENSBGRG00000014092)	CCDC149 (ENSBGRG00000013831) #12	LGI2 (ENSBGRG00000013655) #13	ENSBGRG00000013588 #14	ENSBGRG00000013553 #14	PI4K2B (ENSBGRG00000013424) #17	ZCCHC4 (ENSBGRG00000013290) #18	ANAPC4 (ENSBGRG00000012791) #19	SLC34A2 (ENSBGRG00000012616) #20	SEL1L3 (ENSBGRG00000012074) #21	ENSBGRG00000011943	ENSBGRG00000011453 #22	CCKAR (ENSBGRG00000011346) #23	TBC1D19 (ENSBGRG00000010907) #24	STIM2 (ENSBGRG00000010679) #25	PCDH7 (ENSBGRG00000010538)	ENSBGRG00000010506	ENSBGRG00000010405	ENSBGRG00000010382	ENSBGRG00000005033	ARAP2 (ENSBGRG00000004941)	ENSBGRG00000004904	DTHD1 (ENSBGRG00000004754)	ENSBGRG00000004728	NWD2 (ENSBGRG00000004653)	C4orf19 (ENSBGRG00000004620)	RELL1 (ENSBGRG00000004570)
Wild yak	DUPLICATION
Wild yak	MODERN SPECIES	1808															HPSE (ENSBMUG00000009695)	ENSBMUG00000009646 #22	COQ2 (ENSBMUG00000009639)
Wild yak	MODERN SPECIES	883	ADGRA3 (ENSBMUG00000008551)	GBA3 (ENSBMUG00000008806) #8	PPARGC1A (ENSBMUG00000008896) #9	DHX15 (ENSBMUG00000008926) #10	SOD3 (ENSBMUG00000008945)	CCDC149 (ENSBMUG00000009015) #12	LGI2 (ENSBMUG00000009065) #13	ENSBMUG00000009078 #14	ENSBMUG00000009090 #14	PI4K2B (ENSBMUG00000009097) #17	ZCCHC4 (ENSBMUG00000009112) #18	ANAPC4 (ENSBMUG00000009147) #19	SLC34A2 (ENSBMUG00000009192) #20	SEL1L3 (ENSBMUG00000009222) #21	ENSBMUG00000009243	ENSBMUG00000009400 #22	CCKAR (ENSBMUG00000009499) #23
Bos_b	ANCESTRAL SPECIES	14	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398.f.b.b	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000165919	ENSGT00940000157221	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.a.b.b.a.b.b.a.b.a.b	ENSGT00940000154788.nb.a	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00960000190968	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000153446.a.a.f	ENSGT00940000156247
Hybrid Bos Indicus	DUPLICATION
Hybrid Bos Indicus	MODERN SPECIES	25	ENSBIXG00005017276	ENSBIXG00005017372	ENSBIXG00005002829	ENSBIXG00005005513	MAPK10 (ENSBIXG00005018360)	ARHGAP24 (ENSBIXG00005018506)	WDFY3 (ENSBIXG00005018815)	CDS1 (ENSBIXG00005000063)	NKX6-1 (ENSBIXG00005003082)	ENSBIXG00005018974	ABRAXAS1 (ENSBIXG00005019067)	ENSBIXG00005019139	HELQ (ENSBIXG00005019158)	ENSBIXG00005019178	HPSE (ENSBIXG00005019430)	ENSBIXG00005003170 #22	COQ2 (ENSBIXG00005019522)	ENSBIXG00005019535	ENSBIXG00005019584	COPS4 (ENSBIXG00005019645)	LIN54 (ENSBIXG00005003283)	THAP9 (ENSBIXG00005006456)	SEC31A (ENSBIXG00005020914)	ENSBIXG00005021130	ENSBIXG00005003572	SCD5 (ENSBIXG00005003574)	ENSBIXG00005021178	TMEM150C (ENSBIXG00005003590)	ENOPH1 (ENSBIXG00005021273)	HNRNPDL (ENSBIXG00005021441)	ENSBIXG00005003631
Hybrid Bos Indicus	MODERN SPECIES	25	KCNIP4 (ENSBIXG00005016282)	ADGRA3 (ENSBIXG00005016078)	GBA3 (ENSBIXG00005002538) #8	PPARGC1A (ENSBIXG00005002513) #9	DHX15 (ENSBIXG00005000158) #10	SOD3 (ENSBIXG00005015766)	CCDC149 (ENSBIXG00005015720) #12	LGI2 (ENSBIXG00005015662) #13	SEPSECS (ENSBIXG00005015627) #14	PI4K2B (ENSBIXG00005007139) #17	ZCCHC4 (ENSBIXG00005015528) #18	ANAPC4 (ENSBIXG00005015494) #19	SLC34A2 (ENSBIXG00005015405) #20	SEL1L3 (ENSBIXG00005015302) #21	ENSBIXG00005015232	ENSBIXG00005015160 #22	ENSBIXG00005014915	CCKAR (ENSBIXG00005014904) #23	TBC1D19 (ENSBIXG00005014867) #24	STIM2 (ENSBIXG00005014774) #25	ENSBIXG00005014691	ENSBIXG00005014672	PCDH7 (ENSBIXG00005014583)	ENSBIXG00005014562	ENSBIXG00005014544	ARAP2 (ENSBIXG00005014502)	DTHD1 (ENSBIXG00005014282)	ENSBIXG00005014188	NWD2 (ENSBIXG00005001843)	C4orf19 (ENSBIXG00005014137)	RELL1 (ENSBIXG00005014109)
Cow	DUPLICATION
Cow	MODERN SPECIES	25	ENSBTAG00000050963	ENSBTAG00000047514	PTPN13 (ENSBTAG00000014947)	ENSBTAG00000050276	ENSBTAG00000045839	MAPK10 (ENSBTAG00000020048)	ARHGAP24 (ENSBTAG00000003959)	WDFY3 (ENSBTAG00000013495)	CDS1 (ENSBTAG00000045787)	NKX6-1 (ENSBTAG00000002518)	GPAT3 (ENSBTAG00000017592)	ABRAXAS1 (ENSBTAG00000014076)	MRPS18C (ENSBTAG00000018155)	HELQ (ENSBTAG00000018151)	HPSE (ENSBTAG00000005745)	ENSBTAG00000046700 #22	COQ2 (ENSBTAG00000005744)	PLAC8A (ENSBTAG00000009849)	PLAC8B (ENSBTAG00000031750)	COPS4 (ENSBTAG00000006950)	LIN54 (ENSBTAG00000010546)	THAP9 (ENSBTAG00000022450)	SEC31A (ENSBTAG00000020525)	SCD5 (ENSBTAG00000022449)	TMEM150C (ENSBTAG00000032588)	ENOPH1 (ENSBTAG00000014805)	HNRNPDL (ENSBTAG00000014804)	HNRNPD (ENSBTAG00000013952)	ENSBTAG00000052070	RASGEF1B (ENSBTAG00000006561)	PRKG2 (ENSBTAG00000002978)
Cow	MODERN SPECIES	25	ENSBTAG00000054175	ENSBTAG00000033327	PPARGC1A (ENSBTAG00000017024) #9	ENSBTAG00000050251	DHX15 (ENSBTAG00000008896) #10	SOD3 (ENSBTAG00000013980)	CCDC149 (ENSBTAG00000021940) #12	LGI2 (ENSBTAG00000017390) #13	SEPSECS (ENSBTAG00000014616) #14	PI4K2B (ENSBTAG00000006492) #17	ZCCHC4 (ENSBTAG00000007240) #18	ANAPC4 (ENSBTAG00000000646) #19	SLC34A2 (ENSBTAG00000001545) #20	SEL1L3 (ENSBTAG00000002299) #21	SMIM20 (ENSBTAG00000003897)	RBPJ (ENSBTAG00000003602) #22	CCKAR (ENSBTAG00000004988) #23	TBC1D19 (ENSBTAG00000033214) #24	STIM2 (ENSBTAG00000019353) #25	ENSBTAG00000018885	PCDH7 (ENSBTAG00000000061)	ENSBTAG00000048536	ARAP2 (ENSBTAG00000039922)	DTHD1 (ENSBTAG00000009833)	ENSBTAG00000050655	NWD2 (ENSBTAG00000001491)	C6H4orf19 (ENSBTAG00000006643)	RELL1 (ENSBTAG00000004329)	ENSBTAG00000053088	PGM2 (ENSBTAG00000005773)	ENSBTAG00000052370
American bison	DUPLICATION
American bison	MODERN SPECIES	3145				ENSBBBG00000019073	MAPK10 (ENSBBBG00000021242)	ENSBBBG00000021405	ARHGAP24 (ENSBBBG00000021449)	WDFY3 (ENSBBBG00000021530)	CDS1 (ENSBBBG00000021561)	NKX6-1 (ENSBBBG00000021568)	GPAT3 (ENSBBBG00000021607)	ABRAXAS1 (ENSBBBG00000021618)	ENSBBBG00000007196	HELQ (ENSBBBG00000005762)	HPSE (ENSBBBG00000021800)	ENSBBBG00000021819 #22	COQ2 (ENSBBBG00000021841)	ENSBBBG00000005784	PLAC8 (ENSBBBG00000021864)	COPS4 (ENSBBBG00000021925)	LIN54 (ENSBBBG00000022049)	THAP9 (ENSBBBG00000005822)	SEC31A (ENSBBBG00000022615)	SCD5 (ENSBBBG00000008790)	TMEM150C (ENSBBBG00000022705)	ENSBBBG00000022729	HNRNPDL (ENSBBBG00000005995)	HNRNPD (ENSBBBG00000022878)	ENSBBBG00000022894	RASGEF1B (ENSBBBG00000023005)	PRKG2 (ENSBBBG00000023088)
American bison	MODERN SPECIES	3060		ADGRA3 (ENSBBBG00000015349)	GBA3 (ENSBBBG00000015331) #8	PPARGC1A (ENSBBBG00000003508) #9	DHX15 (ENSBBBG00000001321) #10	SOD3 (ENSBBBG00000001360)	CCDC149 (ENSBBBG00000001370) #12	LGI2 (ENSBBBG00000015299) #13	SEPSECS (ENSBBBG00000015291) #14	PI4K2B (ENSBBBG00000015277) #17	ZCCHC4 (ENSBBBG00000003522) #18	ANAPC4 (ENSBBBG00000003767) #19	SLC34A2 (ENSBBBG00000015150) #20	SEL1L3 (ENSBBBG00000015090) #21	ENSBBBG00000015008	ENSBBBG00000014989 #22	CCKAR (ENSBBBG00000000817) #23	TBC1D19 (ENSBBBG00000000826) #24	STIM2 (ENSBBBG00000000908) #25	PCDH7 (ENSBBBG00000001030)	ENSBBBG00000001043	ENSBBBG00000001055
Caprinae	ANCESTRAL SPECIES	13	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398.e.b	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000165919	ENSGT00390000003718.d.tb.a.a	ENSGT00940000157221	ENSGT00940000154788.ob	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949.c.b	ENSGT00940000157949.c.a
Goat	MODERN SPECIES	25	ADGRA3 (ENSCHIG00000019880)	GBA3 (ENSCHIG00000011472) #8	PPARGC1A (ENSCHIG00000015991) #9	DHX15 (ENSCHIG00000026321) #10	SOD3 (ENSCHIG00000017899)	CCDC149 (ENSCHIG00000015517) #12	LGI2 (ENSCHIG00000022089) #13	SEPSECS (ENSCHIG00000010810) #14	PI4K2B (ENSCHIG00000022484) #17	ZCCHC4 (ENSCHIG00000022645) #18	ANAPC4 (ENSCHIG00000023609) #19	SLC34A2 (ENSCHIG00000015739) #20	SEL1L3 (ENSCHIG00000020813) #21	ENSCHIG00000016018	ENSCHIG00000026046	RBPJ (ENSCHIG00000022041) #22	CCKAR (ENSCHIG00000024465) #23	TBC1D19 (ENSCHIG00000015018) #24	STIM2 (ENSCHIG00000004257) #25	ENSCHIG00000013741	ENSCHIG00000010665	PCDH7 (ENSCHIG00000003875)	ENSCHIG00000023385	ENSCHIG00000009154	ARAP2 (ENSCHIG00000014093)	ENSCHIG00000022196	DTHD1 (ENSCHIG00000018566)	NWD2 (ENSCHIG00000004289)	C4orf19 (ENSCHIG00000015946)	RELL1 (ENSCHIG00000005379)	ENSCHIG00000022059
Rambouillet Sheep	MODERN SPECIES	22	GBA3 (ENSOARG00020014356) #8	PPARGC1A (ENSOARG00020014504) #9	DHX15 (ENSOARG00020015199) #10	SOD3 (ENSOARG00020015395)	CCDC149 (ENSOARG00020015431) #12	LGI2 (ENSOARG00020015826) #13	SEPSECS (ENSOARG00020015918) #14	PI4K2B (ENSOARG00020015990) #17	ZCCHC4 (ENSOARG00020016087) #18	ANAPC4 (ENSOARG00020016174) #19	ENSOARG00020017059	SLC34A2 (ENSOARG00020017154) #20	SEL1L3 (ENSOARG00020017417) #21	ENSOARG00020019074	ENSOARG00020019119	RBPJ (ENSOARG00020019203) #22	CCKAR (ENSOARG00020019878) #23	TBC1D19 (ENSOARG00020019954) #24	STIM2 (ENSOARG00020020357) #25	ENSOARG00020020464	ENSOARG00020020499	PCDH7 (ENSOARG00020020567)	ENSOARG00020020648	ARAP2 (ENSOARG00020020778)	DTHD1 (ENSOARG00020021575)	NWD2 (ENSOARG00020021937)	C6H4orf19 (ENSOARG00020021966)	RELL1 (ENSOARG00020021988)	PGM2 (ENSOARG00020022008)	TBC1D1 (ENSOARG00020022096)	KLF3 (ENSOARG00020022589)
Cetacea	ANCESTRAL SPECIES	12	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398.d	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00860000135660	ENSGT00990000211064	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00960000191194	ENSGT00940000157949	ENSGT00940000157456
Odontoceti	DUPLICATION
Odontoceti	DUPLICATION
Odontoceti	ANCESTRAL SPECIES																	ENSGT00390000005197.a.y.a #22
Odontoceti_a	ANCESTRAL SPECIES																	ENSGT00390000005197.a.y.a #22
Odontoceti_b	ANCESTRAL SPECIES	11	ENSGT00940000158402	ENSGT00940000159756	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00390000005197.a.y.a #22	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398.d	ENSGT00390000005197.a.z #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00970000193421.C.b.d.a.a.a	ENSGT00940000157221	ENSGT00860000135660	ENSGT00990000211064	ENSGT00940000160787.b	ENSGT00940000160197	ENSGT00940000155541.C.eb.b	ENSGT00940000153404.b
Vaquita	MODERN SPECIES	16	SLIT2 (ENSPSNG00000017795)	PACRGL (ENSPSNG00000019499)	KCNIP4 (ENSPSNG00000019756)	ADGRA3 (ENSPSNG00000020337)	PPARGC1A (ENSPSNG00000020569) #9	ENSPSNG00000020646	ENSPSNG00000020677	DHX15 (ENSPSNG00000020699) #10	SOD3 (ENSPSNG00000020739)	CCDC149 (ENSPSNG00000020784) #12	LGI2 (ENSPSNG00000020909) #13	SEPSECS (ENSPSNG00000020956) #14	PI4K2B (ENSPSNG00000021008) #17	ZCCHC4 (ENSPSNG00000021077) #18	ANAPC4 (ENSPSNG00000021117) #19	ENSPSNG00000021159 #22	SLC34A2 (ENSPSNG00000021188) #20	SEL1L3 (ENSPSNG00000021270) #21	SMIM20 (ENSPSNG00000021406)	ENSPSNG00000021513 #22	CCKAR (ENSPSNG00000021657) #23	TBC1D19 (ENSPSNG00000021702) #24	ENSPSNG00000021771	STIM2 (ENSPSNG00000021816) #25	ENSPSNG00000021862	ENSPSNG00000000096	PCDH7 (ENSPSNG00000000169)	ENSPSNG00000000209	ENSPSNG00000000226	ENSPSNG00000000255	ENSPSNG00000000272
Monodontidae	ANCESTRAL SPECIES	9	ENSGT00940000158402	ENSGT00940000159756	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00390000005197.a.y.a #22	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398.d	ENSGT00390000005197.a.z #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00860000135660	ENSGT00990000211064	ENSGT00940000155534.f.b	ENSGT00940000160787.b	ENSGT00940000160197	ENSGT00940000155541.C.eb.b	ENSGT00940000153404.b
Narwhal	MODERN SPECIES	307	ENSMMNG00015009273	SLIT2 (ENSMMNG00015009152)	PACRGL (ENSMMNG00015009050)	KCNIP4 (ENSMMNG00015008956)	ADGRA3 (ENSMMNG00015008884)	ENSMMNG00015008863 #8	PPARGC1A (ENSMMNG00015008833) #9	ENSMMNG00015008809	DHX15 (ENSMMNG00015008799) #10	CCDC149 (ENSMMNG00015008754) #12	LGI2 (ENSMMNG00015008731) #13	SEPSECS (ENSMMNG00015008713) #14	PI4K2B (ENSMMNG00015008695) #17	ZCCHC4 (ENSMMNG00015008659) #18	ANAPC4 (ENSMMNG00015008631) #19	ENSMMNG00015008616 #22	SLC34A2 (ENSMMNG00015008603) #20	SEL1L3 (ENSMMNG00015008572) #21	ENSMMNG00015008545	ENSMMNG00015008477 #22	CCKAR (ENSMMNG00015008421) #23	TBC1D19 (ENSMMNG00015008369) #24	ENSMMNG00015008341	STIM2 (ENSMMNG00015008324) #25	ENSMMNG00015008293	PCDH7 (ENSMMNG00015008274)	ENSMMNG00015008263	ENSMMNG00015008253	ENSMMNG00015008245	ENSMMNG00015008234	ARAP2 (ENSMMNG00015008196)
Odontoceti	ANCESTRAL SPECIES	6	ENSGT00390000006595	ENSGT00940000161223	ENSGT00940000153599.A	ENSGT00950000183007.a.a.b	ENSGT00390000003568	ENSGT00950000182904.a.a.b	ENSGT00940000153599.B.b	ENSGT00390000010734.j.b.h.a	ENSGT00940000161267.b	ENSGT00940000164159	ENSGT00940000162545	ENSGT00940000163462	ENSGT00940000162119	ENSGT00940000162819	ENSGT00940000163265	ENSGT00390000005197.a.y.b #22	ENSGT00940000162402	ENSGT00940000162215	ENSGT00940000163580	ENSGT00940000162315	ENSGT00390000015308	ENSGT00940000162848	ENSGT01100000263479.C	ENSGT00940000161392	ENSGT00940000162336	ENSGT00940000161038	ENSGT00940000161167	ENSGT00390000003308.a	ENSGT00950000182929.B.b	ENSGT00390000015914	ENSGT00390000007913
Odontoceti_a	ANCESTRAL SPECIES	7	ENSGT00940000153599.A	ENSGT00950000183007.a.a.b	ENSGT00390000003568	ENSGT00950000182904.a.a.b	ENSGT00940000153599.B.b	ENSGT00390000010734.j.b.h.a	ENSGT00940000161267.b	ENSGT00940000164159	ENSGT00940000162545	ENSGT00940000163462	ENSGT00940000162119	ENSGT00940000162819	ENSGT00940000163265	ENSGT00390000002398.d	ENSGT00390000005197.a.z #22	ENSGT00390000005197.a.y.b #22	ENSGT00940000162402	ENSGT00940000162215	ENSGT00940000163580	ENSGT00940000162315	ENSGT00390000015308	ENSGT00940000162848	ENSGT01100000263479.C	ENSGT00940000161392	ENSGT00940000162336	ENSGT00940000161038	ENSGT00940000161167	ENSGT00390000003308.a	ENSGT00950000182929.B.b	ENSGT00390000015914	ENSGT00390000007913
Odontoceti_b	ANCESTRAL SPECIES	5	ENSGT00730000111407	ENSGT00390000006595	ENSGT00940000161223	ENSGT00940000153599.A	ENSGT00950000183007.a.a.b	ENSGT00390000003568	ENSGT00950000182904.a.a.b	ENSGT00390000010734.j.b.h.a	ENSGT00940000161267.b	ENSGT00940000164159	ENSGT00940000162545	ENSGT00940000163462	ENSGT00940000162119	ENSGT00940000162819	ENSGT00940000163265	ENSGT00390000005197.a.y.b #22	ENSGT00940000162402	ENSGT00940000162215	ENSGT00940000163580	ENSGT00940000162315	ENSGT00940000162848	ENSGT01100000263479.C	ENSGT00940000161392	ENSGT00940000162336	ENSGT00940000161038	ENSGT00940000161167	ENSGT00390000003308.a	ENSGT00950000182929.B.b	ENSGT00390000015914	ENSGT00390000007913	ENSGT00530000063461.B
Vaquita	MODERN SPECIES	10	ZNF428 (ENSPSNG00000012675)	CADM4 (ENSPSNG00000012638)	PLAUR (ENSPSNG00000012605)	IRGC (ENSPSNG00000012553)	SMG9 (ENSPSNG00000012488)	KCNN4 (ENSPSNG00000012439)	ENSPSNG00000012199	ENSPSNG00000012110	ZNF404 (ENSPSNG00000012045)	ZNF45 (ENSPSNG00000011992)	ZNF234 (ENSPSNG00000011970)	ZNF226 (ENSPSNG00000011933)	ENSPSNG00000011903	ZNF227 (ENSPSNG00000011880)	ENSPSNG00000011845	ENSPSNG00000011802 #22	ZNF235 (ENSPSNG00000011738)	ZNF112 (ENSPSNG00000011685)	ENSPSNG00000011637	ZNF180 (ENSPSNG00000011592)	PVR (ENSPSNG00000011424)	CEACAM16 (ENSPSNG00000011329)	BCL3 (ENSPSNG00000011274)	CBLC (ENSPSNG00000011032)	BCAM (ENSPSNG00000010946)	NECTIN2 (ENSPSNG00000010879)	TOMM40 (ENSPSNG00000010804)	APOE (ENSPSNG00000010763)	ENSPSNG00000010685	APOC2 (ENSPSNG00000010569)	CLPTM1 (ENSPSNG00000010345)
Sperm whale	MODERN SPECIES	8	ZNF428 (ENSPCTG00005004804)	ZNF576 (ENSPCTG00005004787)	IRGQ (ENSPCTG00005004773)	ENSPCTG00005004754	XRCC1 (ENSPCTG00005004727)	SMG9 (ENSPCTG00005004696)	KCNN4 (ENSPCTG00005004665)	LYPD5 (ENSPCTG00005004646)	ENSPCTG00005004632	ZNF283 (ENSPCTG00005004607)	ZNF404 (ENSPCTG00005004577)	ENSPCTG00005004558	ZNF234 (ENSPCTG00005004394)	ZNF227 (ENSPCTG00005004283)	ZNF233 (ENSPCTG00005019492)	ENSPCTG00005019460 #22	ZNF235 (ENSPCTG00005019382)	ZNF112 (ENSPCTG00005019339)	ZNF180 (ENSPCTG00005019212)	PPP1R37 (ENSPCTG00005019110)	NKPD1 (ENSPCTG00005019081)	ENSPCTG00005018967	BLOC1S3 (ENSPCTG00005018936)	EXOC3L2 (ENSPCTG00005018759)	APOE (ENSPCTG00005018722)	RELB (ENSPCTG00005018535)	CLASRP (ENSPCTG00005018407)	ENSPCTG00005018377	GGN (ENSPCTG00005018321)	PSMD8 (ENSPCTG00005018243)	ENSPCTG00005016796
Odontoceti	ANCESTRAL SPECIES	11	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398.d	ENSGT00390000005197.a.z #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00970000193421.C.b.d.a.a.a	ENSGT00940000157221	ENSGT00860000135660	ENSGT00990000211064	ENSGT00940000160197	ENSGT00940000155541.C.eb.b	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00960000191194
Sperm whale	MODERN SPECIES	18	KCNIP4 (ENSPCTG00005012048)	ADGRA3 (ENSPCTG00005011845)	ENSPCTG00005011760 #8	PPARGC1A (ENSPCTG00005011631) #9	DHX15 (ENSPCTG00005011521) #10	SOD3 (ENSPCTG00005011496)	CCDC149 (ENSPCTG00005011289) #12	LGI2 (ENSPCTG00005011194) #13	SEPSECS (ENSPCTG00005011169) #14	PI4K2B (ENSPCTG00005011034) #17	ZCCHC4 (ENSPCTG00005010952) #18	ANAPC4 (ENSPCTG00005010830) #19	ENSPCTG00005010721 #20	SEL1L3 (ENSPCTG00005010228) #21	ENSPCTG00005010143 #20	ENSPCTG00005009702 #22	CCKAR (ENSPCTG00005009612) #23	TBC1D19 (ENSPCTG00005009308) #24	ENSPCTG00005009237	STIM2 (ENSPCTG00005008859) #25	ENSPCTG00005008821	ENSPCTG00005008787	PCDH7 (ENSPCTG00005008773)	ENSPCTG00005008758	ENSPCTG00005008723	ENSPCTG00005008684	ENSPCTG00005018478	DTHD1 (ENSPCTG00005018074)	ENSPCTG00005018056	ENSPCTG00005018031	ENSPCTG00005018016
Odontoceti_a	ANCESTRAL SPECIES	7	ENSGT00940000161223	ENSGT00940000153599.A	ENSGT00950000183007.a.a.b	ENSGT00390000003568	ENSGT00950000182904.a.a.b	ENSGT00940000153599.B.b	ENSGT00390000010734.j.b.h.a	ENSGT00940000161267.b	ENSGT00940000164159	ENSGT00940000162545	ENSGT00940000163462	ENSGT00940000162119	ENSGT00940000162819	ENSGT00940000163265	ENSGT00390000002398.d	ENSGT00390000005197.a.z #22	ENSGT00390000005197.a.y.b #22	ENSGT00940000162402	ENSGT00940000162215	ENSGT00940000163580	ENSGT00940000162315	ENSGT00390000015308	ENSGT00940000162848	ENSGT01100000263479.C	ENSGT00940000161392	ENSGT00940000162336	ENSGT00940000161038	ENSGT00940000161167	ENSGT00390000003308.a	ENSGT00950000182929.B.b	ENSGT00390000015914
Dolphin	MODERN SPECIES	1708																RBPJ (ENSTTRG00000009022) #22	CCKAR (ENSTTRG00000009078) #23
Odontoceti_b	ANCESTRAL SPECIES	11	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00390000005197.a.y.a #22	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398.d	ENSGT00390000005197.a.z #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00970000193421.C.b.d.a.a.a	ENSGT00940000157221	ENSGT00860000135660	ENSGT00990000211064	ENSGT00940000160787.b	ENSGT00940000160197	ENSGT00940000155541.C.eb.b	ENSGT00940000153404.b	ENSGT00390000018316.b.b.g.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709
Vaquita	MODERN SPECIES	16	PPARGC1A (ENSPSNG00000020569) #9	ENSPSNG00000020646	ENSPSNG00000020677	DHX15 (ENSPSNG00000020699) #10	SOD3 (ENSPSNG00000020739)	CCDC149 (ENSPSNG00000020784) #12	LGI2 (ENSPSNG00000020909) #13	SEPSECS (ENSPSNG00000020956) #14	PI4K2B (ENSPSNG00000021008) #17	ZCCHC4 (ENSPSNG00000021077) #18	ANAPC4 (ENSPSNG00000021117) #19	ENSPSNG00000021159 #22	SLC34A2 (ENSPSNG00000021188) #20	SEL1L3 (ENSPSNG00000021270) #21	SMIM20 (ENSPSNG00000021406)	ENSPSNG00000021513 #22	CCKAR (ENSPSNG00000021657) #23	TBC1D19 (ENSPSNG00000021702) #24	ENSPSNG00000021771	STIM2 (ENSPSNG00000021816) #25	ENSPSNG00000021862	ENSPSNG00000000096	PCDH7 (ENSPSNG00000000169)	ENSPSNG00000000209	ENSPSNG00000000226	ENSPSNG00000000255	ENSPSNG00000000272	ENSPSNG00000000293	ENSPSNG00000000307	ARAP2 (ENSPSNG00000000450)	ENSPSNG00000000612
Monodontidae	ANCESTRAL SPECIES	9	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00900000143693	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00390000005197.a.y.a #22	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398.d	ENSGT00390000005197.a.z #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00860000135660	ENSGT00990000211064	ENSGT00940000155534.f.b	ENSGT00940000160787.b	ENSGT00940000160197	ENSGT00940000155541.C.eb.b	ENSGT00940000153404.b	ENSGT00390000018316.b.b.g.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709
Beluga whale	MODERN SPECIES	77	KCNIP4 (ENSDLEG00000014391)	ADGRA3 (ENSDLEG00000014341)	PPARGC1A (ENSDLEG00000014290) #9	ENSDLEG00000014273	DHX15 (ENSDLEG00000014245) #10	SOD3 (ENSDLEG00000014224)	CCDC149 (ENSDLEG00000014195) #12	LGI2 (ENSDLEG00000014089) #13	SEPSECS (ENSDLEG00000014056) #14	PI4K2B (ENSDLEG00000014029) #17	ZCCHC4 (ENSDLEG00000013994) #18	ANAPC4 (ENSDLEG00000013885) #19	SLC34A2 (ENSDLEG00000013774) #20	SEL1L3 (ENSDLEG00000013692) #21	SMIM20 (ENSDLEG00000013675)	RBPJ (ENSDLEG00000013407) #22	CCKAR (ENSDLEG00000013378) #23	TBC1D19 (ENSDLEG00000013283) #24	ENSDLEG00000013230	STIM2 (ENSDLEG00000013214) #25	ENSDLEG00000013183	PCDH7 (ENSDLEG00000013164)	ENSDLEG00000013137	ENSDLEG00000015493	ENSDLEG00000015489	ENSDLEG00000015483	ARAP2 (ENSDLEG00000015400)	ENSDLEG00000015377	DTHD1 (ENSDLEG00000015353)	ENSDLEG00000015342	ENSDLEG00000015338
Narwhal	DUPLICATION
Narwhal	MODERN SPECIES	296	IRGQ (ENSMMNG00015005465)	ZNF576 (ENSMMNG00015005472)	ZNF428 (ENSMMNG00015005482)	CADM4 (ENSMMNG00015005492)	PLAUR (ENSMMNG00015005513)	IRGC (ENSMMNG00015005542)	SMG9 (ENSMMNG00015005571)	KCNN4 (ENSMMNG00015005629)	ENSMMNG00015005688	ENSMMNG00015005709	ZNF404 (ENSMMNG00015005731)	ZNF226 (ENSMMNG00015005773)	ZNF234 (ENSMMNG00015005804)	ZNF227 (ENSMMNG00015005818)	ZNF233 (ENSMMNG00015005842)	ENSMMNG00015005869 #22	ZNF235 (ENSMMNG00015005891)	ZNF112 (ENSMMNG00015005915)	ZNF180 (ENSMMNG00015005951)	PVR (ENSMMNG00015005992)	CEACAM16 (ENSMMNG00015006016)	BCL3 (ENSMMNG00015006047)	CBLC (ENSMMNG00015006080)	BCAM (ENSMMNG00015006104)	NECTIN2 (ENSMMNG00015006141)	TOMM40 (ENSMMNG00015006165)	APOE (ENSMMNG00015006181)	ENSMMNG00015006191	APOC2 (ENSMMNG00015006207)	CLPTM1 (ENSMMNG00015006240)	RELB (ENSMMNG00015006315)
Narwhal	MODERN SPECIES	307	ADGRA3 (ENSMMNG00015008884)	ENSMMNG00015008863 #8	PPARGC1A (ENSMMNG00015008833) #9	ENSMMNG00015008809	DHX15 (ENSMMNG00015008799) #10	CCDC149 (ENSMMNG00015008754) #12	LGI2 (ENSMMNG00015008731) #13	SEPSECS (ENSMMNG00015008713) #14	PI4K2B (ENSMMNG00015008695) #17	ZCCHC4 (ENSMMNG00015008659) #18	ANAPC4 (ENSMMNG00015008631) #19	ENSMMNG00015008616 #22	SLC34A2 (ENSMMNG00015008603) #20	SEL1L3 (ENSMMNG00015008572) #21	ENSMMNG00015008545	ENSMMNG00015008477 #22	CCKAR (ENSMMNG00015008421) #23	TBC1D19 (ENSMMNG00015008369) #24	ENSMMNG00015008341	STIM2 (ENSMMNG00015008324) #25	ENSMMNG00015008293	PCDH7 (ENSMMNG00015008274)	ENSMMNG00015008263	ENSMMNG00015008253	ENSMMNG00015008245	ENSMMNG00015008234	ARAP2 (ENSMMNG00015008196)	ENSMMNG00015008174	DTHD1 (ENSMMNG00015008156)	ENSMMNG00015008131	ENSMMNG00015008120
Blue whale	DUPLICATION
Blue whale	MODERN SPECIES	10	ZNF576 (ENSBMSG00010018851)	ZNF428 (ENSBMSG00010018837)	CADM4 (ENSBMSG00010018803)	PLAUR (ENSBMSG00010018727)	SMG9 (ENSBMSG00010018658)	KCNN4 (ENSBMSG00010018610)	LYPD5 (ENSBMSG00010018589)	ENSBMSG00010018533	ENSBMSG00010018502	ENSBMSG00010018418	ZNF404 (ENSBMSG00010018387)	ZNF45 (ENSBMSG00010018363)	ENSBMSG00010018339	ZNF227 (ENSBMSG00010018318)	ZNF233 (ENSBMSG00010018274)	ENSBMSG00010018200 #22	ZNF235 (ENSBMSG00010018150)	ZNF112 (ENSBMSG00010018101)	ENSBMSG00010018020	ZNF180 (ENSBMSG00010017984)	PVR (ENSBMSG00010017815)	ENSBMSG00010017740	CEACAM16 (ENSBMSG00010017706)	BCL3 (ENSBMSG00010017643)	CBLC (ENSBMSG00010017585)	BCAM (ENSBMSG00010017513)	NECTIN2 (ENSBMSG00010017417)	TOMM40 (ENSBMSG00010017365)	APOE (ENSBMSG00010017333)	ENSBMSG00010017290	APOC2 (ENSBMSG00010017237)
Blue whale	MODERN SPECIES	16	ENSBMSG00010002859	KCNIP4 (ENSBMSG00010002394)	ADGRA3 (ENSBMSG00010002059)	ENSBMSG00010001976 #8	PPARGC1A (ENSBMSG00010001849) #9	DHX15 (ENSBMSG00010001763) #10	CCDC149 (ENSBMSG00010001719) #12	LGI2 (ENSBMSG00010001673) #13	SEPSECS (ENSBMSG00010001650) #14	PI4K2B (ENSBMSG00010001625) #17	ZCCHC4 (ENSBMSG00010001603) #18	ANAPC4 (ENSBMSG00010001569) #19	SLC34A2 (ENSBMSG00010001530) #20	SEL1L3 (ENSBMSG00010001472) #21	SMIM20 (ENSBMSG00010001389)	ENSBMSG00010001239 #22	CCKAR (ENSBMSG00010001131) #23	TBC1D19 (ENSBMSG00010001070) #24	ENSBMSG00010001022	STIM2 (ENSBMSG00010000991) #25	ENSBMSG00010000959	PCDH7 (ENSBMSG00010000937)	ENSBMSG00010000928	ARAP2 (ENSBMSG00010000782)	DTHD1 (ENSBMSG00010000578)	ENSBMSG00010000528	ENSBMSG00010000513	NWD2 (ENSBMSG00010000492)	C4orf19 (ENSBMSG00010000470)	RELL1 (ENSBMSG00010000412)	PGM2 (ENSBMSG00010000369)
Atlantogenata	ANCESTRAL SPECIES	46	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201
Afrotheria	ANCESTRAL SPECIES	53	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b
Afrotheria_a	ANCESTRAL SPECIES	50	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b
Hyrax	MODERN SPECIES	5170																RBPJ (ENSPCAG00000003550) #22
Elephant	MODERN SPECIES	164	GBA3 (ENSLAFG00000029577) #8	ENSLAFG00000030988	PPARGC1A (ENSLAFG00000012981) #9	DHX15 (ENSLAFG00000005466) #10	SOD3 (ENSLAFG00000022899)	CCDC149 (ENSLAFG00000007108) #12	LGI2 (ENSLAFG00000002475) #13	SEPSECS (ENSLAFG00000010804) #14	PI4K2B (ENSLAFG00000012228) #17	ZCCHC4 (ENSLAFG00000012234) #18	ANAPC4 (ENSLAFG00000012242) #19	ENSLAFG00000026426 #20	ENSLAFG00000013325 #20	SEL1L3 (ENSLAFG00000012362) #21	ENSLAFG00000007091	RBPJ (ENSLAFG00000000410) #22	CCKAR (ENSLAFG00000000294) #23	TBC1D19 (ENSLAFG00000009636) #24	STIM2 (ENSLAFG00000003344) #25	PCDH7 (ENSLAFG00000010937)	ARAP2 (ENSLAFG00000003991)	NWD2 (ENSLAFG00000020908)	C4orf19 (ENSLAFG00000030311)	RELL1 (ENSLAFG00000016276)	PGM2 (ENSLAFG00000005067)	TBC1D1 (ENSLAFG00000005076)	KLF3 (ENSLAFG00000032166)	TLR10 (ENSLAFG00000008544)	TLR1 (ENSLAFG00000008549)	TLR6 (ENSLAFG00000032091)	FAM114A1 (ENSLAFG00000013559)
Xenarthra	ANCESTRAL SPECIES																	ENSGT00390000005197.a #22
Sloth	MODERN SPECIES	5611																RBPJ (ENSCHOG00000001582) #22
Armadillo	MODERN SPECIES	1850	PPARGC1A (ENSDNOG00000041106) #9	DHX15 (ENSDNOG00000014438) #10	SOD3 (ENSDNOG00000024793)	CCDC149 (ENSDNOG00000038755) #12	LGI2 (ENSDNOG00000037791) #13	SEPSECS (ENSDNOG00000049494) #14	PI4K2B (ENSDNOG00000044369) #17	ZCCHC4 (ENSDNOG00000004525) #18	ANAPC4 (ENSDNOG00000032226) #19	ENSDNOG00000032662	SLC34A2 (ENSDNOG00000032564) #20	ENSDNOG00000039515	SEL1L3 (ENSDNOG00000004313) #21	ENSDNOG00000043946	ENSDNOG00000043501	RBPJ (ENSDNOG00000035383) #22
Marsupialia	ANCESTRAL SPECIES	7	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b.q #20	ENSGT00950000183177.a.a.b.r #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT01030000234945	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000163662	ENSGT00940000162201
Opossum	MODERN SPECIES	4	SEPSECS (ENSMODG00000000423) #14	PI4K2B (ENSMODG00000000405) #17	ZCCHC4 (ENSMODG00000000388) #18	ENSMODG00000000363 #19	ENSMODG00000000328 #20	ENSMODG00000049518 #20	ENSMODG00000000304 #20	ENSMODG00000041870 #20	ENSMODG00000025532 #20	ENSMODG00000027534	ENSMODG00000025549 #20	ENSMODG00000042552 #20	ENSMODG00000051279 #20	SEL1L3 (ENSMODG00000000154) #21	SMIM20 (ENSMODG00000000137)	RBPJ (ENSMODG00000000129) #22	ENSMODG00000047093	ENSMODG00000039806	CCKAR (ENSMODG00000000113) #23	TBC1D19 (ENSMODG00000000109) #24	STIM2 (ENSMODG00000000083) #25	ENSMODG00000046673	PCDH7 (ENSMODG00000024790)	ENSMODG00000047017	ARAP2 (ENSMODG00000020518)	DTHD1 (ENSMODG00000020520)	ENSMODG00000036956	NWD2 (ENSMODG00000040392)	ENSMODG00000020525	RELL1 (ENSMODG00000020526)	ENSMODG00000020527
Marsupialia_b	ANCESTRAL SPECIES	8	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b.q #20	ENSGT00950000183177.a.a.b.r #20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT01030000234945	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000163662	ENSGT00940000162201
Tasmanian devil	MODERN SPECIES	5	SOD3 (ENSSHAG00000010341)	CCDC149 (ENSSHAG00000022022) #12	LGI2 (ENSSHAG00000031544) #13	SEPSECS (ENSSHAG00000007001) #14	PI4K2B (ENSSHAG00000031409) #17	ZCCHC4 (ENSSHAG00000004438) #18	ANAPC4 (ENSSHAG00000003402) #19	ENSSHAG00000010251 #20	ENSSHAG00000004649 #20	ENSSHAG00000010890 #20	ENSSHAG00000031795 #20	ENSSHAG00000028205 #20	ENSSHAG00000023004 #20	SEL1L3 (ENSSHAG00000009419) #21	ENSSHAG00000030717	RBPJ (ENSSHAG00000003329) #22	CCKAR (ENSSHAG00000000403) #23	TBC1D19 (ENSSHAG00000009955) #24	STIM2 (ENSSHAG00000008249) #25	ENSSHAG00000023484	PCDH7 (ENSSHAG00000010841)	ENSSHAG00000030937	ENSSHAG00000020576	ARAP2 (ENSSHAG00000011185)	DTHD1 (ENSSHAG00000010416)	NWD2 (ENSSHAG00000005236)	ENSSHAG00000002940	RELL1 (ENSSHAG00000023710)	PGM2 (ENSSHAG00000005459)	TBC1D1 (ENSSHAG00000013165)	KLF3 (ENSSHAG00000026965)
Diprotodontia	ANCESTRAL SPECIES	10	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b.q #20	ENSGT00940000159983 #21	ENSGT00390000002398.a	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000165320	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000163662	ENSGT00940000162201
Wallaby	MODERN SPECIES	7611																RBPJ (ENSMEUG00000006588) #22
Diprotodontia_a	ANCESTRAL SPECIES	12	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.a.a.b.q #20	ENSGT00940000159983 #21	ENSGT00390000002398.a	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00950000185589	ENSGT00940000165320	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000163662
koala	MODERN SPECIES	2	KCNIP4 (ENSPCIG00000032533)	ADGRA3 (ENSPCIG00000003169)	GBA3 (ENSPCIG00000031948) #8	PPARGC1A (ENSPCIG00000015835) #9	DHX15 (ENSPCIG00000004023) #10	SOD3 (ENSPCIG00000004032)	CCDC149 (ENSPCIG00000004052) #12	LGI2 (ENSPCIG00000004064) #13	SEPSECS (ENSPCIG00000004071) #14	PI4K2B (ENSPCIG00000004075) #17	ZCCHC4 (ENSPCIG00000004082) #18	ANAPC4 (ENSPCIG00000004096) #19	SLC34A2 (ENSPCIG00000010248) #20	SEL1L3 (ENSPCIG00000020485) #21	ENSPCIG00000020488	RBPJ (ENSPCIG00000020491) #22	CCKAR (ENSPCIG00000020497) #23	TBC1D19 (ENSPCIG00000031776) #24	STIM2 (ENSPCIG00000034168) #25	H2AZ1 (ENSPCIG00000027205)	ENSPCIG00000032746	PCDH7 (ENSPCIG00000019678)	ENSPCIG00000018003	ARAP2 (ENSPCIG00000035555)	DTHD1 (ENSPCIG00000006852)	ENSPCIG00000006865	ENSPCIG00000034342	ENSPCIG00000033128	ENSPCIG00000027065	RELL1 (ENSPCIG00000025460)	PGM2 (ENSPCIG00000020881)
Common wonbat	MODERN SPECIES	1054	DHX15 (ENSVURG00010004378) #10	ENSVURG00010004425	CCDC149 (ENSVURG00010004454) #12	LGI2 (ENSVURG00010004467) #13	SEPSECS (ENSVURG00010004502) #14	PI4K2B (ENSVURG00010004516) #17	ZCCHC4 (ENSVURG00010004655) #18	ANAPC4 (ENSVURG00010004724) #19	ENSVURG00010004753	ENSVURG00010004760	ENSVURG00010004770 #20	ENSVURG00010004876 #20	ENSVURG00010005005	SEL1L3 (ENSVURG00010005010) #21	ENSVURG00010005042	RBPJ (ENSVURG00010005079) #22	CCKAR (ENSVURG00010005131) #23	TBC1D19 (ENSVURG00010005165) #24	STIM2 (ENSVURG00010005237) #25	ENSVURG00010005715	PCDH7 (ENSVURG00010005757)	ARAP2 (ENSVURG00010005816)	DTHD1 (ENSVURG00010005897)	ENSVURG00010005913	NWD2 (ENSVURG00010005952)	ENSVURG00010006035	RELL1 (ENSVURG00010006044)	PGM2 (ENSVURG00010006062)	TBC1D1 (ENSVURG00010006143)	KLF3 (ENSVURG00010006204)	TLR10 (ENSVURG00010006211)
Platypus	MODERN SPECIES	9	KCNIP4 (ENSOANG00000006672)	ADGRA3 (ENSOANG00000006677)	GBA3 (ENSOANG00000006679) #8	PPARGC1A (ENSOANG00000006680) #9	DHX15 (ENSOANG00000006682) #10	ENSOANG00000038598	CCDC149 (ENSOANG00000006683) #12	LGI2 (ENSOANG00000041994) #13	SEPSECS (ENSOANG00000045251) #14	PI4K2B (ENSOANG00000006681) #17	ZCCHC4 (ENSOANG00000006688) #18	ANAPC4 (ENSOANG00000006689) #19	SLC34A2 (ENSOANG00000006695) #20	SEL1L3 (ENSOANG00000006697) #21	ENSOANG00000037572	RBPJ (ENSOANG00000006699) #22	CCKAR (ENSOANG00000029819) #23	TBC1D19 (ENSOANG00000006700) #24	STIM2 (ENSOANG00000006701) #25	ENSOANG00000039040	PCDH7 (ENSOANG00000036095)	ARAP2 (ENSOANG00000010310)	NWD2 (ENSOANG00000010313)	RELL1 (ENSOANG00000010314)	PGM2 (ENSOANG00000010315)	TBC1D1 (ENSOANG00000010316)	KLF3 (ENSOANG00000047136)	ENSOANG00000047464	ENSOANG00000050732	FAM114A1 (ENSOANG00000010319)	ENSOANG00000010321
Sauria	ANCESTRAL SPECIES	6	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.b ##20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00980000201267	ENSGT00940000177623	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT01030000234945	ENSGT00940000157221.r	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000165320	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT01030000235076	ENSGT00940000157949	ENSGT00940000157456
Lepidosauria	ANCESTRAL SPECIES	9	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.b ##20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT01030000234945	ENSGT00940000157221.r	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT01030000235076	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000162201
tuatara	MODERN SPECIES	363																RBPJ (ENSSPUG00000003632) #22	CCKAR (ENSSPUG00000003639) #23	TBC1D19 (ENSSPUG00000003661) #24	STIM2 (ENSSPUG00000003819) #25
Episquamata	ANCESTRAL SPECIES	3	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.b ##20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT01030000234945	ENSGT00940000157221.r	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000162201	ENSGT00390000010054.b
Toxicofera	ANCESTRAL SPECIES	21	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.b ##20	ENSGT00940000159983 #21	ENSGT01040000242873	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT01030000234945	ENSGT00940000157221.r	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000162201.c	ENSGT00390000010054.b
Lizard	MODERN SPECIES	962									PI4K2B (ENSACAG00000013530) #17	ZCCHC4 (ENSACAG00000013561) #18	ANAPC4 (ENSACAG00000013604) #19	ENSACAG00000035948	ENSACAG00000014383 ##20	SEL1L3 (ENSACAG00000014494) #21	ENSACAG00000014567	RBPJ (ENSACAG00000014578) #22	CCKAR (ENSACAG00000014635) #23	TBC1D19 (ENSACAG00000014660) #24	STIM2 (ENSACAG00000014755) #25
Elapidae	ANCESTRAL SPECIES	22	ENSGT00960000189468	ENSGT00390000013532.q	ENSGT01060000251732	ENSGT00940000153284.b	ENSGT00940000158643	ENSGT00390000011192	ENSGT00940000162578	ENSGT00940000158757	ENSGT00390000003601.b	ENSGT00940000156043	ENSGT00940000156021	ENSGT00940000155626	ENSGT00940000156710	ENSGT00940000177623	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221.r	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000162201.c	ENSGT00390000010054.b	ENSGT00940000155358
Indian cobra	MODERN SPECIES	3	ENSNNAG00000014290	ENSNNAG00000014270	ENSNNAG00000014256	USP46 (ENSNNAG00000014235)	ENSNNAG00000014225	RASL11B (ENSNNAG00000014208)	SCFD2 (ENSNNAG00000014166)	ENSNNAG00000014116	LNX1 (ENSNNAG00000014069)	CHIC2 (ENSNNAG00000014042)	GSX2 (ENSNNAG00000014028)	PDGFRA (ENSNNAG00000010974)	KIT (ENSNNAG00000008242)	KDR (ENSNNAG00000007823)	ENSNNAG00000007785	RBPJ (ENSNNAG00000007657) #22	CCKAR (ENSNNAG00000007585) #23	TBC1D19 (ENSNNAG00000007498) #24	STIM2 (ENSNNAG00000007431) #25	ENSNNAG00000007417	ENSNNAG00000007402	PCDH7 (ENSNNAG00000007378)	ENSNNAG00000007360	ENSNNAG00000007348	DTHD1 (ENSNNAG00000007301)	NWD2 (ENSNNAG00000007268)	RELL1 (ENSNNAG00000007248)	PGM2 (ENSNNAG00000007219)	TBC1D1 (ENSNNAG00000005416)	KLF3 (ENSNNAG00000005269)	TLR6 (ENSNNAG00000005256)
Elapidae_a	ANCESTRAL SPECIES	25	ENSGT00960000189468	ENSGT00390000013532.q	ENSGT01060000251732	ENSGT00940000153284.b	ENSGT00940000158643	ENSGT00390000011192.e	ENSGT00940000162578	ENSGT00940000158757	ENSGT00390000003601.b	ENSGT00940000156043	ENSGT00940000156021	ENSGT00940000155626	ENSGT00940000156710	ENSGT00940000177623	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221.r	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247.r	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000162201.c	ENSGT00390000010054.b	ENSGT00940000155358
Blue-lipped sea krait	MODERN SPECIES	3433																RBPJ (ENSLLTG00000005876) #22
Acanthophiinae	ANCESTRAL SPECIES	4	ENSGT00960000189468	ENSGT00390000013532.q	ENSGT01060000251732	ENSGT00940000153284.b	ENSGT00940000158643	ENSGT00390000011192.e	ENSGT00940000162578	ENSGT00940000158757	ENSGT00390000003601.b	ENSGT00940000156043	ENSGT00940000156021	ENSGT00940000155626	ENSGT00940000156710	ENSGT00940000177623	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221.r	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247.r	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000162201.c	ENSGT00390000010054.b	ENSGT00940000155358
Eastern brown snake	MODERN SPECIES	12	DCUN1D4 (ENSPTXG00000005914)	SGCB (ENSPTXG00000005913)	ENSPTXG00000005912	ENSPTXG00000005911	USP46 (ENSPTXG00000005910)	RASL11B (ENSPTXG00000005909)	SCFD2 (ENSPTXG00000005906)	ENSPTXG00000005905	LNX1 (ENSPTXG00000005286)	CHIC2 (ENSPTXG00000005285)	GSX2 (ENSPTXG00000005284)	PDGFRA (ENSPTXG00000005108)	KIT (ENSPTXG00000004726)	KDR (ENSPTXG00000004719)	ENSPTXG00000004718	RBPJ (ENSPTXG00000004716) #22	CCKAR (ENSPTXG00000004707) #23	TBC1D19 (ENSPTXG00000004706) #24	STIM2 (ENSPTXG00000004705) #25	PCDH7 (ENSPTXG00000004704)	ARAP2 (ENSPTXG00000004702)	DTHD1 (ENSPTXG00000004701)	NWD2 (ENSPTXG00000004699)	ENSPTXG00000004697	RELL1 (ENSPTXG00000004695)	PGM2 (ENSPTXG00000004690)	TBC1D1 (ENSPTXG00000003167)	KLF3 (ENSPTXG00000003142)	TLR6 (ENSPTXG00000003138)	FAM114A1 (ENSPTXG00000003136)	ENSPTXG00000003133
Mainland tiger snake	MODERN SPECIES	367															SMIM20 (ENSNSUG00000011023)	RBPJ (ENSNSUG00000011022) #22	ENSNSUG00000011020	CCKAR (ENSNSUG00000010999) #23	TBC1D19 (ENSNSUG00000010844) #24	STIM2 (ENSNSUG00000010832) #25
Laterata	ANCESTRAL SPECIES	21	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.b ##20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221.r	ENSGT01030000234945	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000162201	ENSGT00390000010054.b
Argentine black and white tegu	MODERN SPECIES	1	KCNIP4 (ENSSMRG00000001469)	ADGRA3 (ENSSMRG00000001520)	GBA3 (ENSSMRG00000001542) #8	PPARGC1A (ENSSMRG00000001615) #9	DHX15 (ENSSMRG00000001639) #10	SOD3 (ENSSMRG00000001656)	CCDC149 (ENSSMRG00000001694) #12	LGI2 (ENSSMRG00000001701) #13	SEPSECS (ENSSMRG00000001718) #14	PI4K2B (ENSSMRG00000001725) #17	ZCCHC4 (ENSSMRG00000001737) #18	ANAPC4 (ENSSMRG00000001814) #19	ENSSMRG00000001828 ##20	SEL1L3 (ENSSMRG00000001883) #21	SMIM20 (ENSSMRG00000001898)	RBPJ (ENSSMRG00000001903) #22	CCKAR (ENSSMRG00000001920) #23	TBC1D19 (ENSSMRG00000001948) #24	STIM2 (ENSSMRG00000001982) #25	ENSSMRG00000002078	ENSSMRG00000002157	PCDH7 (ENSSMRG00000002175)	ENSSMRG00000002180	ARAP2 (ENSSMRG00000002189)	DTHD1 (ENSSMRG00000002220)	NWD2 (ENSSMRG00000002231)	ENSSMRG00000002251	RELL1 (ENSSMRG00000002260)	PGM2 (ENSSMRG00000002267)	TBC1D1 (ENSSMRG00000002348)	KLF3 (ENSSMRG00000002464)
Common wall lizard	MODERN SPECIES	17	SOD3 (ENSPMRG00000012656)	CCDC149 (ENSPMRG00000012672) #12	ENSPMRG00000012712 #13	ENSPMRG00000012716	ENSPMRG00000012723 #13	ENSPMRG00000012728	SEPSECS (ENSPMRG00000012735) #14	PI4K2B (ENSPMRG00000012743) #17	ZCCHC4 (ENSPMRG00000012751) #18	ANAPC4 (ENSPMRG00000012834) #19	ENSPMRG00000013386	ENSPMRG00000013390 ##20	SEL1L3 (ENSPMRG00000013412) #21	ENSPMRG00000013495	ENSPMRG00000013498	RBPJ (ENSPMRG00000013511) #22	CCKAR (ENSPMRG00000013536) #23	TBC1D19 (ENSPMRG00000013570) #24	STIM2 (ENSPMRG00000013643) #25	ENSPMRG00000013648	PCDH7 (ENSPMRG00000013653)	ENSPMRG00000013659	ENSPMRG00000013663	ENSPMRG00000013667	ENSPMRG00000013671	ARAP2 (ENSPMRG00000013685)	ENSPMRG00000013752	DTHD1 (ENSPMRG00000013757)	ENSPMRG00000013760	ENSPMRG00000013775	ENSPMRG00000013784
Archelosauria	ANCESTRAL SPECIES	4	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.b ##20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00980000201267	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT01030000234945	ENSGT00940000157221.r	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000165320	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT01030000235076	ENSGT00940000157949	ENSGT00940000157456
Archosauria	ANCESTRAL SPECIES	1	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.b ##20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00980000201267	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT01030000234945	ENSGT00940000157221.r	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000165320	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000162201
Australian saltwater crocodile	MODERN SPECIES	65	ENSCPRG00005004791	ADGRA3 (ENSCPRG00005004846)	PPARGC1A (ENSCPRG00005004873) #9	ENSCPRG00005004898	DHX15 (ENSCPRG00005004902) #10	SOD3 (ENSCPRG00005004903)	CCDC149 (ENSCPRG00005004911) #12	LGI2 (ENSCPRG00005004932) #13	SEPSECS (ENSCPRG00005004978) #14	PI4K2B (ENSCPRG00005004981) #17	ZCCHC4 (ENSCPRG00005004986) #18	ANAPC4 (ENSCPRG00005005005) #19	ENSCPRG00005005064 ##20	SEL1L3 (ENSCPRG00005005084) #21	SMIM20 (ENSCPRG00005005197)	RBPJ (ENSCPRG00005005213) #22	CCKAR (ENSCPRG00005005217) #23	TBC1D19 (ENSCPRG00005005240) #24	STIM2 (ENSCPRG00005005298) #25	PCDH7 (ENSCPRG00005005388)	RPS29 (ENSCPRG00005005404)	ENSCPRG00005005412	TIMM17B (ENSCPRG00005005430)	ARAP2 (ENSCPRG00005005447)	DTHD1 (ENSCPRG00005005494)	NWD2 (ENSCPRG00005005535)	C4orf19 (ENSCPRG00005005560)	RELL1 (ENSCPRG00005005574)	PGM2 (ENSCPRG00005005602)	TBC1D1 (ENSCPRG00005005626)	KLF3 (ENSCPRG00005005693)
Aves	ANCESTRAL SPECIES	3	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.b ##20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00980000201267	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT01030000234945	ENSGT00940000157221.r	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000165320	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000162201.j
African ostrich	MODERN SPECIES	548	PACRGL (ENSSCUG00000006427)	KCNIP4 (ENSSCUG00000006432)	ADGRA3 (ENSSCUG00000006446)	GBA3 (ENSSCUG00000006451) #8	PPARGC1A (ENSSCUG00000006459) #9	DHX15 (ENSSCUG00000006468) #10	SOD3 (ENSSCUG00000006470)	CCDC149 (ENSSCUG00000006474) #12	LGI2 (ENSSCUG00000006480) #13	SEPSECS (ENSSCUG00000006488) #14	PI4K2B (ENSSCUG00000006495) #17	ZCCHC4 (ENSSCUG00000006498) #18	ANAPC4 (ENSSCUG00000006515) #19	ENSSCUG00000006534 ##20	SEL1L3 (ENSSCUG00000006536) #21	RBPJ (ENSSCUG00000006539) #22	CCKAR (ENSSCUG00000006541) #23	TBC1D19 (ENSSCUG00000006542) #24	STIM2 (ENSSCUG00000006544) #25	PCDH7 (ENSSCUG00000006563)	ENSSCUG00000006572	ARAP2 (ENSSCUG00000006577)	DTHD1 (ENSSCUG00000006590)	NWD2 (ENSSCUG00000006593)	C4orf19 (ENSSCUG00000006603)	RELL1 (ENSSCUG00000006607)	PGM2 (ENSSCUG00000006613)	TBC1D1 (ENSSCUG00000006618)	KLF3 (ENSSCUG00000006627)	ENSSCUG00000006629	FAM114A1 (ENSSCUG00000006635)
Neognathae	ANCESTRAL SPECIES	5	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.b ##20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00980000201267	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT01030000234945	ENSGT00940000157221.r	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000165320	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000162201.j
Galloanserae	ANCESTRAL SPECIES	5	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.b ##20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221.r	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000165320	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000162201.j	ENSGT00940000162201.i
Phasianidae	ANCESTRAL SPECIES	2	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.b ##20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221.r	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000165320	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000162201.j	ENSGT00940000162201.i
Japanese quail	MODERN SPECIES	22	KCNIP4 (ENSCJPG00005018389)	ADGRA3 (ENSCJPG00005018386)	PPARGC1A (ENSCJPG00005018379) #9	DHX15 (ENSCJPG00005018376) #10	SOD3 (ENSCJPG00005018375)	CCDC149 (ENSCJPG00005018374) #12	LGI2 (ENSCJPG00005018373) #13	ENSCJPG00005018372	SEPSECS (ENSCJPG00005018371) #14	PI4K2B (ENSCJPG00005018370) #17	ZCCHC4 (ENSCJPG00005018369) #18	ANAPC4 (ENSCJPG00005018368) #19	ENSCJPG00005018366 ##20	SEL1L3 (ENSCJPG00005018359) #21	SMIM20 (ENSCJPG00005018355)	RBPJ (ENSCJPG00005018352) #22	CCKAR (ENSCJPG00005018351) #23	TBC1D19 (ENSCJPG00005018350) #24	STIM2 (ENSCJPG00005018349) #25	PCDH7 (ENSCJPG00005018339)	ARAP2 (ENSCJPG00005018329)	DTHD1 (ENSCJPG00005018328)	NWD2 (ENSCJPG00005018327)	C4orf19 (ENSCJPG00005018326)	RELL1 (ENSCJPG00005018325)	PGM2 (ENSCJPG00005018323)	TBC1D1 (ENSCJPG00005018321)	KLF3 (ENSCJPG00005018317)	TLR6 (ENSCJPG00005018284)	FAM114A1 (ENSCJPG00005018282)	KLHL5 (ENSCJPG00005018217)
Phasianidae_b	ANCESTRAL SPECIES	4	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.b ##20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221.r	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000165320	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000162201.j	ENSGT00940000162201.i
Chicken	MODERN SPECIES	33	ADGRA3 (ENSGALG00010009200)	ENSGALG00010010027 #8	PPARGC1A (ENSGALG00010010006) #9	DHX15 (ENSGALG00010009943) #10	SOD3 (ENSGALG00010009833)	CCDC149 (ENSGALG00010009728) #12	LGI2 (ENSGALG00010010178) #13	ENSGALG00010010175	SEPSECS (ENSGALG00010010161) #14	PI4K2B (ENSGALG00010010945) #17	ZCCHC4 (ENSGALG00010010939) #18	ANAPC4 (ENSGALG00010010933) #19	SLC34A2 (ENSGALG00010010900) ##20	SEL1L3 (ENSGALG00010010857) #21	SMIM20 (ENSGALG00010010853)	RBPJ (ENSGALG00010010837) #22	CCKAR (ENSGALG00010010732) #23	TBC1D19 (ENSGALG00010010722) #24	STIM2 (ENSGALG00010010685) #25	PCDH7 (ENSGALG00010009266)	ENSGALG00010011667	ENSGALG00010014270	ARAP2 (ENSGALG00010014705)	DTHD1 (ENSGALG00010014681)	NWD2 (ENSGALG00010014632)	C4orf19 (ENSGALG00010014455)	RELL1 (ENSGALG00010015353)	PGM2 (ENSGALG00010015310)	TBC1D1 (ENSGALG00010015200)	KLF3 (ENSGALG00010015165)	TLR1A (ENSGALG00010015119)
Turkey	MODERN SPECIES	24	PACRGL (ENSMGAG00000012511)	KCNIP4 (ENSMGAG00000012506)	ADGRA3 (ENSMGAG00000012495)	PPARGC1A (ENSMGAG00000012485) #9	DHX15 (ENSMGAG00000012477) #10	SOD3 (ENSMGAG00000012473)	CCDC149 (ENSMGAG00000012469) #12	LGI2 (ENSMGAG00000012466) #13	SEPSECS (ENSMGAG00000012465) #14	PI4K2B (ENSMGAG00000012457) #17	ZCCHC4 (ENSMGAG00000012455) #18	ANAPC4 (ENSMGAG00000012445) #19	ENSMGAG00000012440 ##20	SEL1L3 (ENSMGAG00000012431) #21	SMIM20 (ENSMGAG00000018966)	RBPJ (ENSMGAG00000012418) #22	CCKAR (ENSMGAG00000012415) #23	TBC1D19 (ENSMGAG00000012405) #24	STIM2 (ENSMGAG00000012398) #25	PCDH7 (ENSMGAG00000010521)	ARAP2 (ENSMGAG00000012390)	DTHD1 (ENSMGAG00000012392)	ENSMGAG00000017111	NWD2 (ENSMGAG00000012386)	C4orf19 (ENSMGAG00000012379)	RELL1 (ENSMGAG00000012380)	PGM2 (ENSMGAG00000012371)	TBC1D1 (ENSMGAG00000012368)	KLF3 (ENSMGAG00000012365)	ENSMGAG00000020268	ENSMGAG00000015741
Anatidae	ANCESTRAL SPECIES	2	ENSGT00940000159756	ENSGT00940000158985	ENSGT00940000157235	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.b ##20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221.r	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000162201.j	ENSGT00940000162201.i	ENSGT00390000010054.b
Pink-footed goose	MODERN SPECIES	57	KCNIP4 (ENSABRG00000014740)	ADGRA3 (ENSABRG00000014750)	ENSABRG00000014762	PPARGC1A (ENSABRG00000014767) #9	DHX15 (ENSABRG00000014781) #10	SOD3 (ENSABRG00000014787)	CCDC149 (ENSABRG00000014788) #12	LGI2 (ENSABRG00000014793) #13	SEPSECS (ENSABRG00000014796) #14	PI4K2B (ENSABRG00000014824) #17	ZCCHC4 (ENSABRG00000014832) #18	ANAPC4 (ENSABRG00000014877) #19	ENSABRG00000015346 ##20	SEL1L3 (ENSABRG00000015358) #21	ENSABRG00000015367	RBPJ (ENSABRG00000015380) #22	CCKAR (ENSABRG00000015392) #23
Duck	MODERN SPECIES	22	PACRGL (ENSAPLG00000009745)	KCNIP4 (ENSAPLG00000009534)	ADGRA3 (ENSAPLG00000009086)	PPARGC1A (ENSAPLG00000005303) #9	DHX15 (ENSAPLG00000005889) #10	SOD3 (ENSAPLG00000001811)	CCDC149 (ENSAPLG00000010671) #12	LGI2 (ENSAPLG00000019636) #13	SEPSECS (ENSAPLG00000009962) #14	PI4K2B (ENSAPLG00000009723) #17	ZCCHC4 (ENSAPLG00000009717) #18	ENSAPLG00000016667 #19	ENSAPLG00000008254 ##20	SEL1L3 (ENSAPLG00000007928) #21	SMIM20 (ENSAPLG00000026829)	RBPJ (ENSAPLG00000007512) #22	ENSAPLG00000020697	CCKAR (ENSAPLG00000025740) #23	TBC1D19 (ENSAPLG00000007019) #24	STIM2 (ENSAPLG00000006859) #25	ENSAPLG00000024292	ENSAPLG00000026215	ENSAPLG00000030723	PCDH7 (ENSAPLG00000027438)	ARAP2 (ENSAPLG00000013894)	DTHD1 (ENSAPLG00000014119)	NWD2 (ENSAPLG00000004933)	C4orf19 (ENSAPLG00000027520)	RELL1 (ENSAPLG00000008800)	PGM2 (ENSAPLG00000008271)	TBC1D1 (ENSAPLG00000007546)
Neognathae_b	ANCESTRAL SPECIES	4	ENSGT00940000158985	ENSGT00940000157235	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.b ##20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00980000201267	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT01030000234945	ENSGT00940000157221.r	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000162201.j	ENSGT00940000162201.i
Passeriformes	ANCESTRAL SPECIES	4	ENSGT00940000159756	ENSGT00940000158985	ENSGT00940000157235	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.b ##20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT01030000234945	ENSGT00940000157221.r	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000162201.j	ENSGT00940000162201.i
Great tit	MODERN SPECIES	23	SLIT2 (ENSPMJG00000016326)	PACRGL (ENSPMJG00000016324)	KCNIP4 (ENSPMJG00000016323)	ADGRA3 (ENSPMJG00000016320)	PPARGC1A (ENSPMJG00000016314) #9	DHX15 (ENSPMJG00000016312) #10	SOD3 (ENSPMJG00000016311)	CCDC149 (ENSPMJG00000016310) #12	LGI2 (ENSPMJG00000016309) #13	PI4K2B (ENSPMJG00000016308) #17	ZCCHC4 (ENSPMJG00000016307) #18	ANAPC4 (ENSPMJG00000016306) #19	ENSPMJG00000016305 ##20	SEL1L3 (ENSPMJG00000016304) #21	SMIM20 (ENSPMJG00000016303)	RBPJ (ENSPMJG00000016301) #22	CCKAR (ENSPMJG00000016300) #23	TBC1D19 (ENSPMJG00000016299) #24	STIM2 (ENSPMJG00000016298) #25	ENSPMJG00000016294	PCDH7 (ENSPMJG00000016293)	ARAP2 (ENSPMJG00000016289)	NWD2 (ENSPMJG00000016287)	C4orf19 (ENSPMJG00000016285)	RELL1 (ENSPMJG00000016284)	PGM2 (ENSPMJG00000016283)	TBC1D1 (ENSPMJG00000016282)	KLF3 (ENSPMJG00000016275)	ENSPMJG00000016274	ENSPMJG00000016273	FAM114A1 (ENSPMJG00000016272)
Passeriformes_d	ANCESTRAL SPECIES	4	ENSGT00940000159756	ENSGT00940000158985	ENSGT00940000157235	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.b ##20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT01030000234945	ENSGT00940000157221.r	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000162201.j	ENSGT00940000162201.i
Flycatcher	MODERN SPECIES	22	SLIT2 (ENSFALG00000009223)	PACRGL (ENSFALG00000009221)	KCNIP4 (ENSFALG00000009214)	ADGRA3 (ENSFALG00000009212)	PPARGC1A (ENSFALG00000009211) #9	DHX15 (ENSFALG00000009210) #10	SOD3 (ENSFALG00000014662)	CCDC149 (ENSFALG00000009207) #12	LGI2 (ENSFALG00000024523) #13	SEPSECS (ENSFALG00000009193) #14	PI4K2B (ENSFALG00000009183) #17	ANAPC4 (ENSFALG00000009180) #19	ENSFALG00000009167 ##20	SEL1L3 (ENSFALG00000009157) #21	SMIM20 (ENSFALG00000009156)	RBPJ (ENSFALG00000028202) #22	CCKAR (ENSFALG00000009150) #23	TBC1D19 (ENSFALG00000009147) #24	STIM2 (ENSFALG00000009145) #25	ENSFALG00000024970	PCDH7 (ENSFALG00000009140)	ENSFALG00000028447	ENSFALG00000009389	ARAP2 (ENSFALG00000009360)	NWD2 (ENSFALG00000009352)	ENSFALG00000026554	RELL1 (ENSFALG00000026363)	PGM2 (ENSFALG00000009335)	TBC1D1 (ENSFALG00000009329)	KLF3 (ENSFALG00000023461)	ENSFALG00000014902
Passeriformes_g	ANCESTRAL SPECIES	5	ENSGT00940000158985	ENSGT00940000157235	ENSGT00950000183137.b.a.a #9	ENSGT00950000183137.b.a.b #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.b ##20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT01030000234945	ENSGT00940000157221.r	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000162201.j	ENSGT00940000162201.i
Medium ground finch	MODERN SPECIES		KCNIP4 (ENSGFOG00000001224)	ADGRA3 (ENSGFOG00000001255)	ENSGFOG00000001383 #9	ENSGFOG00000001391 #9	DHX15 (ENSGFOG00000001405) #10	SOD3 (ENSGFOG00000001424)	CCDC149 (ENSGFOG00000001434) #12	LGI2 (ENSGFOG00000001453) #13	SEPSECS (ENSGFOG00000001468) #14	PI4K2B (ENSGFOG00000001541) #17	ZCCHC4 (ENSGFOG00000001560) #18	ANAPC4 (ENSGFOG00000001587) #19	ENSGFOG00000001618 ##20	SEL1L3 (ENSGFOG00000001635) #21	ENSGFOG00000001653	RBPJ (ENSGFOG00000001663) #22	CCKAR (ENSGFOG00000001670) #23	TBC1D19 (ENSGFOG00000001691) #24	STIM2 (ENSGFOG00000001728) #25	PCDH7 (ENSGFOG00000001767)	ARAP2 (ENSGFOG00000001784)	NWD2 (ENSGFOG00000001843)	ENSGFOG00000001851	RELL1 (ENSGFOG00000001863)	PGM2 (ENSGFOG00000001868)	TBC1D1 (ENSGFOG00000001882)	KLF3 (ENSGFOG00000001925)	ENSGFOG00000001932	ENSGFOG00000001940	ENSGFOG00000001947	KLHL5 (ENSGFOG00000001967)
Passeroidea	ANCESTRAL SPECIES	4	ENSGT00940000158985	ENSGT00940000157235	ENSGT00950000183137.b.a.a #9	ENSGT00950000183137.b.a.b #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.b ##20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT01030000234945	ENSGT00940000157221.r	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000162201.j	ENSGT00940000162201.i
Zebra finch	MODERN SPECIES	25	PACRGL (ENSTGUG00000009573)	KCNIP4 (ENSTGUG00000009548)	ADGRA3 (ENSTGUG00000009517)	PPARGC1A (ENSTGUG00000009487) #9	DHX15 (ENSTGUG00000009452) #10	SOD3 (ENSTGUG00000009451)	CCDC149 (ENSTGUG00000009438) #12	LGI2 (ENSTGUG00000021263) #13	SEPSECS (ENSTGUG00000009417) #14	PI4K2B (ENSTGUG00000009404) #17	ZCCHC4 (ENSTGUG00000009397) #18	ANAPC4 (ENSTGUG00000009328) #19	ENSTGUG00000009289 ##20	SEL1L3 (ENSTGUG00000009265) #21	SMIM20 (ENSTGUG00000009263)	RBPJ (ENSTGUG00000009245) #22	CCKAR (ENSTGUG00000009230) #23	TBC1D19 (ENSTGUG00000009193) #24	STIM2 (ENSTGUG00000009177) #25	ENSTGUG00000025253	PCDH7 (ENSTGUG00000009172)	ENSTGUG00000028708	ARAP2 (ENSTGUG00000009152)	DTHD1 (ENSTGUG00000009149)	NWD2 (ENSTGUG00000009144)	C4orf19 (ENSTGUG00000020799)	RELL1 (ENSTGUG00000009141)	PGM2 (ENSTGUG00000009108)	TBC1D1 (ENSTGUG00000009056)	KLF3 (ENSTGUG00000009046)	ENSTGUG00000027436
Common canary	MODERN SPECIES	2	PACRGL (ENSSCAG00000004596)	KCNIP4 (ENSSCAG00000004606)	ADGRA3 (ENSSCAG00000004631)	PPARGC1A (ENSSCAG00000004681) #9	DHX15 (ENSSCAG00000004696) #10	SOD3 (ENSSCAG00000004707)	CCDC149 (ENSSCAG00000004710) #12	LGI2 (ENSSCAG00000004718) #13	SEPSECS (ENSSCAG00000004722) #14	PI4K2B (ENSSCAG00000004729) #17	ZCCHC4 (ENSSCAG00000004739) #18	ANAPC4 (ENSSCAG00000004765) #19	ENSSCAG00000004791 ##20	SEL1L3 (ENSSCAG00000004798) #21	SMIM20 (ENSSCAG00000004809)	RBPJ (ENSSCAG00000004817) #22	CCKAR (ENSSCAG00000004827) #23	TBC1D19 (ENSSCAG00000004860) #24	STIM2 (ENSSCAG00000004950) #25	ENSSCAG00000005042	PCDH7 (ENSSCAG00000005046)	ARAP2 (ENSSCAG00000005112)	DTHD1 (ENSSCAG00000005246)	ENSSCAG00000005268	ENSSCAG00000005284	NWD2 (ENSSCAG00000005289)	C4orf19 (ENSSCAG00000005294)	RELL1 (ENSSCAG00000005297)	PGM2 (ENSSCAG00000005299)	TBC1D1 (ENSSCAG00000005305)	KLF3 (ENSSCAG00000005339)
Neognathae_c	ANCESTRAL SPECIES	3	ENSGT00940000158985	ENSGT00940000157235	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.b ##20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00980000201267	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221.r	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000162201.j	ENSGT00940000162201.i	ENSGT00990000210295
Kakapo	MODERN SPECIES	24	ENSSHBG00005017723	PPARGC1A (ENSSHBG00005017729) #9	DHX15 (ENSSHBG00005017735) #10	SOD3 (ENSSHBG00005017737)	CCDC149 (ENSSHBG00005017766) #12	LGI2 (ENSSHBG00005017808) #13	SEPSECS (ENSSHBG00005017996) #14	PI4K2B (ENSSHBG00005018001) #17	ZCCHC4 (ENSSHBG00005018004) #18	ENSSHBG00005018011 #19	ENSSHBG00005018018 #19	ENSSHBG00005018026 ##20	SEL1L3 (ENSSHBG00005018031) #21	ENSSHBG00005018035	ENSSHBG00005018043	RBPJ (ENSSHBG00005018048) #22	CCKAR (ENSSHBG00005018052) #23	TBC1D19 (ENSSHBG00005018056) #24	STIM2 (ENSSHBG00005018062) #25	ENSSHBG00005018070	PCDH7 (ENSSHBG00005018087)	DTHD1 (ENSSHBG00005018104)	NWD2 (ENSSHBG00005018109)	C4orf19 (ENSSHBG00005018114)	RELL1 (ENSSHBG00005018119)	PGM2 (ENSSHBG00005018123)	TBC1D1 (ENSSHBG00005018155)	KLF3 (ENSSHBG00005018273)	TLR6 (ENSSHBG00005000935)	ENSSHBG00005000955	ENSSHBG00005000963
Golden eagle	MODERN SPECIES		PACRGL (ENSACCG00020000198)	KCNIP4 (ENSACCG00020000199)	ADGRA3 (ENSACCG00020000200)	PPARGC1A (ENSACCG00020000201) #9	DHX15 (ENSACCG00020000202) #10	SOD3 (ENSACCG00020000203)	CCDC149 (ENSACCG00020000204) #12	LGI2 (ENSACCG00020000205) #13	SEPSECS (ENSACCG00020000206) #14	PI4K2B (ENSACCG00020000207) #17	ZCCHC4 (ENSACCG00020000208) #18	ANAPC4 (ENSACCG00020000209) #19	ENSACCG00020000210 ##20	SEL1L3 (ENSACCG00020000211) #21	SMIM20 (ENSACCG00020000212)	RBPJ (ENSACCG00020000213) #22	CCKAR (ENSACCG00020000214) #23	TBC1D19 (ENSACCG00020000215) #24	STIM2 (ENSACCG00020000216) #25	ENSACCG00020000217	ENSACCG00020000218	ENSACCG00020000219	ARAP2 (ENSACCG00020000221)	DTHD1 (ENSACCG00020000222)	NWD2 (ENSACCG00020000223)	C4orf19 (ENSACCG00020000224)	RELL1 (ENSACCG00020000225)	PGM2 (ENSACCG00020000226)	TBC1D1 (ENSACCG00020000227)	KLF3 (ENSACCG00020000228)	ENSACCG00020000229
Cryptodira	ANCESTRAL SPECIES	2	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.b ##20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT01030000234945	ENSGT00940000157221.r	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000165320	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT01030000235076	ENSGT00940000157949	ENSGT00940000157456
Chinese turtle	MODERN SPECIES	2222	GBA3 (ENSPSIG00000011741) #8	PPARGC1A (ENSPSIG00000011790) #9	DHX15 (ENSPSIG00000013524) #10	SOD3 (ENSPSIG00000014347)	CCDC149 (ENSPSIG00000014502) #12	LGI2 (ENSPSIG00000014639) #13	SEPSECS (ENSPSIG00000014906) #14	PI4K2B (ENSPSIG00000015479) #17	ZCCHC4 (ENSPSIG00000015625) #18	ANAPC4 (ENSPSIG00000015647) #19	ENSPSIG00000016305 ##20	ENSPSIG00000016641 #21	ENSPSIG00000016650 #21	ENSPSIG00000000844	SMIM20 (ENSPSIG00000016781)	RBPJ (ENSPSIG00000016822) #22	CCKAR (ENSPSIG00000016827) #23	TBC1D19 (ENSPSIG00000017104) #24	STIM2 (ENSPSIG00000017515) #25	ENSPSIG00000000850	ENSPSIG00000006788	ENSPSIG00000000857	ENSPSIG00000006830	ABCG8 (ENSPSIG00000007213)	ABCG5 (ENSPSIG00000010209)	DYNC2LI1 (ENSPSIG00000010815)	PLEKHH2 (ENSPSIG00000011173)	THADA (ENSPSIG00000011388)	ENSPSIG00000017136
Testudinoidea	ANCESTRAL SPECIES	10	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.b ##20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT01030000234945	ENSGT00940000157221.r	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000165320	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT01030000235076	ENSGT00940000157949	ENSGT00940000157456
Emydidae	ANCESTRAL SPECIES	1	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.b ##20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT01030000234945	ENSGT00940000157221.r	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000165320	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000162201.l
painted turtle	MODERN SPECIES	15	KCNIP4 (ENSCPBG00000027922)	ADGRA3 (ENSCPBG00000027926)	GBA3 (ENSCPBG00000027931) #8	PPARGC1A (ENSCPBG00000027936) #9	DHX15 (ENSCPBG00000027946) #10	SOD3 (ENSCPBG00000027950)	CCDC149 (ENSCPBG00000027952) #12	LGI2 (ENSCPBG00000027955) #13	SEPSECS (ENSCPBG00000027958) #14	PI4K2B (ENSCPBG00000027959) #17	ZCCHC4 (ENSCPBG00000027961) #18	ANAPC4 (ENSCPBG00000027964) #19	ENSCPBG00000027967 ##20	SEL1L3 (ENSCPBG00000027969) #21	SMIM20 (ENSCPBG00000027970)	RBPJ (ENSCPBG00000027973) #22	CCKAR (ENSCPBG00000027976) #23	TBC1D19 (ENSCPBG00000027982) #24	STIM2 (ENSCPBG00000027991) #25	ENSCPBG00000027993	ENSCPBG00000027995	PCDH7 (ENSCPBG00000028002)	ENSCPBG00000028004	ANO5 (ENSCPBG00000028008)	ENSCPBG00000028010	SLC17A6 (ENSCPBG00000028011)	FANCF (ENSCPBG00000028012)	GAS2 (ENSCPBG00000028013)	LUZP2 (ENSCPBG00000028015)	ANO3 (ENSCPBG00000028019)	MUC15 (ENSCPBG00000028023)
Three-toed box turtle	MODERN SPECIES	26	KCNIP4 (ENSTMTG00000002466)	ADGRA3 (ENSTMTG00000002458)	GBA3 (ENSTMTG00000002452) #8	PPARGC1A (ENSTMTG00000002447) #9	DHX15 (ENSTMTG00000002439) #10	SOD3 (ENSTMTG00000002436)	CCDC149 (ENSTMTG00000002431) #12	LGI2 (ENSTMTG00000002426) #13	SEPSECS (ENSTMTG00000002424) #14	PI4K2B (ENSTMTG00000002417) #17	ZCCHC4 (ENSTMTG00000002410) #18	ANAPC4 (ENSTMTG00000002376) #19	ENSTMTG00000002359 ##20	SEL1L3 (ENSTMTG00000002230) #21	ENSTMTG00000002188	RBPJ (ENSTMTG00000002176) #22	CCKAR (ENSTMTG00000002168) #23	TBC1D19 (ENSTMTG00000002117) #24	STIM2 (ENSTMTG00000002059) #25	ENSTMTG00000002043	ENSTMTG00000002037	ENSTMTG00000002030	ENSTMTG00000002023	ENSTMTG00000002014	ENSTMTG00000002010	ARAP2 (ENSTMTG00000001989)	DTHD1 (ENSTMTG00000001942)	ENSTMTG00000001921	NWD2 (ENSTMTG00000001912)	C4orf19 (ENSTMTG00000001898)	RELL1 (ENSTMTG00000001889)
Testudinidae	ANCESTRAL SPECIES	11	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.b ##20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00550000074828.a.b	ENSGT00940000157221.r	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000165320	ENSGT00940000153648.b	ENSGT00390000013778	ENSGT00940000159709	ENSGT00940000156247	ENSGT01030000235076	ENSGT00940000157949	ENSGT00940000157456
Goode s thornscrub tortoise	MODERN SPECIES	19	ADGRA3 (ENSGEVG00005017643)	ENSGEVG00005017685	GBA3 (ENSGEVG00005017692) #8	PPARGC1A (ENSGEVG00005017736) #9	DHX15 (ENSGEVG00005017920) #10	SOD3 (ENSGEVG00005017946)	CCDC149 (ENSGEVG00005017958) #12	LGI2 (ENSGEVG00005017978) #13	SEPSECS (ENSGEVG00005018007) #14	PI4K2B (ENSGEVG00005018044) #17	ZCCHC4 (ENSGEVG00005018084) #18	ANAPC4 (ENSGEVG00005018145) #19	ENSGEVG00005018253 ##20	SEL1L3 (ENSGEVG00005018390) #21	SMIM20 (ENSGEVG00005018677)	RBPJ (ENSGEVG00005018699) #22	CCKAR (ENSGEVG00005018734) #23	TBC1D19 (ENSGEVG00005018764) #24	STIM2 (ENSGEVG00005018809) #25	ENSGEVG00005018826	ENSGEVG00005018842	ENSGEVG00005018852	ENSGEVG00005018865	ARAP2 (ENSGEVG00005018912)	DTHD1 (ENSGEVG00005019031)	ENSGEVG00005004128	NWD2 (ENSGEVG00005004151)	C4orf19 (ENSGEVG00005004186)	RELL1 (ENSGEVG00005004232)	PGM2 (ENSGEVG00005004263)	ENSGEVG00005004286
Abingdon island giant tortoise	MODERN SPECIES	2365					SOD3 (ENSCABG00000003003)	CCDC149 (ENSCABG00000003000) #12	LGI2 (ENSCABG00000002903) #13	SEPSECS (ENSCABG00000002892) #14	PI4K2B (ENSCABG00000002889) #17	ZCCHC4 (ENSCABG00000002879) #18	ANAPC4 (ENSCABG00000002861) #19	ENSCABG00000002847 ##20	SEL1L3 (ENSCABG00000002785) #21	SMIM20 (ENSCABG00000002779)	ENSCABG00000002776	RBPJ (ENSCABG00000002773) #22	CCKAR (ENSCABG00000002770) #23	TBC1D19 (ENSCABG00000002619) #24	STIM2 (ENSCABG00000002594) #25
Anura	ANCESTRAL SPECIES	2	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460 #8	ENSGT00950000183137.b.a #9	ENSGT00940000155800 #10	ENSGT00940000162224	ENSGT00390000015958 #12	ENSGT00940000157294 #13	ENSGT00390000007332 #14	ENSGT00390000010434.a #17	ENSGT00390000012556 #18	ENSGT00390000004612 #19	ENSGT00950000183177.b ##20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT00940000157221	ENSGT01030000234945	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00940000159709	ENSGT00940000156247	ENSGT00940000157949	ENSGT00940000157456	ENSGT00940000162201.b	ENSGT00940000162201.a	ENSGT00390000010054.b
Frog	MODERN SPECIES		ENSXETG00000036897	ppargc1a (ENSXETG00000020468) #9	dhx15 (ENSXETG00000002123) #10	sod3 (ENSXETG00000002122)	ccdc149 (ENSXETG00000002121) #12	lgi2 (ENSXETG00000002120) #13	sepsecs (ENSXETG00000002119) #14	ENSXETG00000046969	ENSXETG00000020344	pi4k2b (ENSXETG00000000962) #17	zcchc4 (ENSXETG00000000960) #18	anapc4 (ENSXETG00000000957) #19	slc34a2 (ENSXETG00000000954) ##20	sel1l3 (ENSXETG00000000947) #21	smim20 (ENSXETG00000043460)	rbpj (ENSXETG00000046629) #22	cckar (ENSXETG00000000911) #23	tbc1d19 (ENSXETG00000000906) #24	stim2 (ENSXETG00000043520) #25	ENSXETG00000047147	ENSXETG00000048313	ENSXETG00000038696 #25	pcdh7 (ENSXETG00000022281)	ENSXETG00000044050	ENSXETG00000045277	ENSXETG00000042544	arap2 (ENSXETG00000030656)	dthd1 (ENSXETG00000010149)	nwd2 (ENSXETG00000010150)	rell1 (ENSXETG00000018465)	pgm2 (ENSXETG00000018469)
Leishan spiny toad	MODERN SPECIES		ENSLLEG00000003228	ENSLLEG00000003217	DHX15 (ENSLLEG00000003148) #10	SOD3 (ENSLLEG00000003122)	CCDC149 (ENSLLEG00000003067) #12	LGI2 (ENSLLEG00000003012) #13	SEPSECS (ENSLLEG00000002935) #14	PI4K2B (ENSLLEG00000002831) #17	ZCCHC4 (ENSLLEG00000002757) #18	ANAPC4 (ENSLLEG00000002614) #19	ENSLLEG00000002565	ENSLLEG00000002525 ##20	SEL1L3 (ENSLLEG00000002464) #21	SMIM20 (ENSLLEG00000002447)	ENSLLEG00000002439	RBPJ (ENSLLEG00000002191) #22	CCKAR (ENSLLEG00000002111) #23	TBC1D19 (ENSLLEG00000001951) #24	ENSLLEG00000001885	ENSLLEG00000001875	ENSLLEG00000001870	STIM2 (ENSLLEG00000001772) #25	ENSLLEG00000001744	ENSLLEG00000001733	SUMO4 (ENSLLEG00000001722)	PCDH7 (ENSLLEG00000001706)	ENSLLEG00000001692	ENSLLEG00000001685	ENSLLEG00000001675	ENSLLEG00000001663	ENSLLEG00000001653
Coelacanth	MODERN SPECIES	1048														ENSLACG00000012756 ##20	SEL1L3 (ENSLACG00000011756) #21	RBPJ (ENSLACG00000007296) #22	TBC1D19 (ENSLACG00000001422) #24
Actinopterygii	ANCESTRAL SPECIES	48	ENSGT00640000091487	ENSGT01060000248588.a.c.b	ENSGT00390000012346	ENSGT00940000155372	ENSGT00950000183130.A	ENSGT00940000155988	ENSGT01070000253744.a.b	ENSGT00930000151028	ENSGT00940000173647	ENSGT00510000046908.a.a.b	ENSGT00390000007586.a.b	ENSGT00940000158340	ENSGT00950000183177.b ##20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00940000174987	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT01030000234945	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00940000159709	ENSGT00940000156247	ENSGT01030000235076	ENSGT00940000157949	ENSGT00940000157456	ENSGT00390000010054.b
Reedfish	MODERN SPECIES	13	MICU3 (ENSECRG00000001103)	fgf20a (ENSECRG00000001076)	FAT4 (ENSECRG00000001042)	ANKRD50 (ENSECRG00000000997)	SPATA5 (ENSECRG00000000946)	NUDT6 (ENSECRG00000004232)	FGF2 (ENSECRG00000004225)	BBS12 (ENSECRG00000004215)	ENSECRG00000004207	adad1 (ENSECRG00000004183)	kiaa1109 (ENSECRG00000004144)	trpc3 (ENSECRG00000004043)	bbs7 (ENSECRG00000004022)	AADAT (ENSECRG00000004005)	mfap3l (ENSECRG00000004003)	rbpjb (ENSECRG00000003971) #22	CCKAR (ENSECRG00000003953) #23	tbc1d19 (ENSECRG00000003917) #24	STIM2 (ENSECRG00000003906) #25	ENSECRG00000003896	PCDH7 (ENSECRG00000003889)	ENSECRG00000003885	ENSECRG00000003880	ARAP2 (ENSECRG00000003861)	DTHD1 (ENSECRG00000003850)	ENSECRG00000003845	NWD2 (ENSECRG00000003842)	RELL1 (ENSECRG00000003837)	pgm2 (ENSECRG00000003830)	ENSECRG00000003826	TBC1D1 (ENSECRG00000003819)
Neopterygii	ANCESTRAL SPECIES	234										ENSGT00510000046908.a.a.b	ENSGT00390000007586.a.b	ENSGT00940000158340	ENSGT00950000183177.b ##20	ENSGT00940000159983 #21	ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00940000174987	ENSGT00390000015965 #24	ENSGT00390000000214.a.b #25	ENSGT01030000234945	ENSGT00940000157221	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00940000159709
Spotted gar	MODERN SPECIES	670	nkx3-2 (ENSLOCG00000009892)	ENSLOCG00000009884	CPEB2 (ENSLOCG00000009876)	C1QTNF7 (ENSLOCG00000009865)	CC2D2A (ENSLOCG00000009843)	fbxl5 (ENSLOCG00000009829)	CD38 (ENSLOCG00000009822)	CD38 (ENSLOCG00000009818)	TNIP3 (ENSLOCG00000009803)	ndnf (ENSLOCG00000009792)	prdm5 (ENSLOCG00000009778)	ENSLOCG00000018032	ENSLOCG00000009766 ##20	SEL1L3 (ENSLOCG00000009749) #21	smim20 (ENSLOCG00000009742)	rbpjb (ENSLOCG00000009731) #22	CCKAR (ENSLOCG00000009722) #23	tbc1d19 (ENSLOCG00000009710) #24	STIM2 (ENSLOCG00000009697) #25	ENSLOCG00000018030	PCDH7 (ENSLOCG00000009687)	ENSLOCG00000009676	ENSLOCG00000018028	ENSLOCG00000009670	NWD2 (ENSLOCG00000009653)	rell1 (ENSLOCG00000009640)	NEK1 (ENSLOCG00000009634)	ENSLOCG00000009628	ENSLOCG00000018026	CPLX1 (ENSLOCG00000009620)	PCGF3 (ENSLOCG00000009614)
Osteoglossocephalai	ANCESTRAL SPECIES	308															ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00940000174987	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT01030000234945	ENSGT00940000157221	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00980000199058	ENSGT00940000159709
Osteoglossiformes	ANCESTRAL SPECIES	89															ENSGT00390000002398	ENSGT00390000005197.a #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221	ENSGT00940000167169	ENSGT00940000153648.b	ENSGT00980000199058	ENSGT00940000159709	ENSGT00940000156198.c.a	ENSGT00530000067117	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b
Asian bonytongue	MODERN SPECIES	2	ENSSFOG00015026608	ENSSFOG00015028501	cideb (ENSSFOG00015033066)	tinf2 (ENSSFOG00015002264)	dhrs4 (ENSSFOG00015002275)	gmpr2 (ENSSFOG00015002314)	NEDD8 (ENSSFOG00015032897)	ENSSFOG00015002371	ENSSFOG00015002420	f13a1b (ENSSFOG00015002426)	ENSSFOG00015002453	ENSSFOG00015028956	ENSSFOG00015033022	ENSSFOG00015028397	smim20 (ENSSFOG00015006459)	rbpjb (ENSSFOG00015026300) #22	CCKAR (ENSSFOG00015033093) #23	tbc1d19 (ENSSFOG00015006278) #24	STIM2 (ENSSFOG00015006168) #25	PCDH7 (ENSSFOG00015006133)	ENSSFOG00015006096	NWD2 (ENSSFOG00015006062)	zgc:194930 (ENSSFOG00015006057)	rell1 (ENSSFOG00015024304)	nkx3-2 (ENSSFOG00015030886)	RAB28 (ENSSFOG00015025065)	ENSSFOG00015028244	ENSSFOG00015025740	HS3ST1 (ENSSFOG00015005823)	ENSSFOG00015005790	WDR1 (ENSSFOG00015005746)
P. kingsleyae	MODERN SPECIES	527																rbpjb (ENSPKIG00000019077) #22	CCKAR (ENSPKIG00000019120) #23	tbc1d19 (ENSPKIG00000019141) #24	STIM2 (ENSPKIG00000019185) #25
Clupeocephala	DUPLICATION
Clupeocephala	DUPLICATION
Clupeocephala	ANCESTRAL SPECIES	338																ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00400000023727	ENSGT00940000165832	ENSGT00940000154757	ENSGT00940000163443	ENSGT00940000155857.e	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00940000155475.g	ENSGT00390000014876	ENSGT00940000155279.C.a.b	ENSGT00940000159769.a.b
Otomorpha	ANCESTRAL SPECIES	256			ENSGT00940000159769.a.b	ENSGT00940000155279.C.a.b	ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b.e	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b.e	ENSGT00940000155857.e	ENSGT00940000163443.m.b	ENSGT01060000248860	ENSGT00390000003601.b	ENSGT00530000063690.a.a	ENSGT00950000183177.a.b.b ##20	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00400000023727	ENSGT00940000165832	ENSGT00390000001491.a	ENSGT00390000010434.a #17	ENSGT00940000159570.a	ENSGT00950000183001.b.b.a	ENSGT00940000156391.d	ENSGT00940000165038.a	ENSGT00940000162580.b.b	ENSGT00940000161707.a.a	ENSGT00390000004855	ENSGT00390000015386.a	ENSGT00940000164407.a.a	ENSGT00390000015863
Otophysi	ANCESTRAL SPECIES	266	ENSGT00390000006284	ENSGT00940000158277.b	ENSGT00940000156295.g	ENSGT00940000155249.g	ENSGT00940000154953.b	ENSGT00390000014876	ENSGT00940000155279.C.a.b	ENSGT00940000159769.a.b	ENSGT01030000234940	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b.e	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b.e	ENSGT00940000155857.e	ENSGT00950000183177.a.b.b ##20	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00400000023727	ENSGT00940000165832	ENSGT00390000001491.a	ENSGT00390000010434.a #17
Characiphysae	ANCESTRAL SPECIES	185													ENSGT01030000234532.B.e.a.a.b	ENSGT00940000155429.a.b	ENSGT00950000183177.a.b.b ##20	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00940000165832	ENSGT00940000154757	ENSGT00970000197336	ENSGT00390000001491.a	ENSGT00390000010434.a #17	ENSGT00730000111168	ENSGT00390000006284	ENSGT00940000158277.b.a.a	ENSGT00940000156295.g	ENSGT00940000154953.b	ENSGT00390000014876	ENSGT00940000155279.C.a.b	ENSGT00940000159769.a.b	ENSGT01030000234940
Channel catfish	MODERN SPECIES	21	TMOD1 (ENSIPUG00000022289)	tdrd7a (ENSIPUG00000022302)	stra6l (ENSIPUG00000022319)	ENSIPUG00000022338	ENSIPUG00000022347	spink4 (ENSIPUG00000022349)	mttp (ENSIPUG00000022354)	ENSIPUG00000022363	tmem66 (ENSIPUG00000022370)	slc24a2 (ENSIPUG00000022400)	tspan5b (ENSIPUG00000022449)	fip1l1b (ENSIPUG00000022454)	chic2 (ENSIPUG00000022466)	ociad1 (ENSIPUG00000022478)	slc34a2a (ENSIPUG00000022490) ##20	rbpja (ENSIPUG00000022511) #22	ENSIPUG00000022530 #25	ENSIPUG00000022563	ENSIPUG00000022574	mtus1 (ENSIPUG00000022581)	mtmr7 (ENSIPUG00000022607)	Vps37a (ENSIPUG00000022622)	MICU3 (ENSIPUG00000022639)	fgf20 (ENSIPUG00000022642)	tusc3 (ENSIPUG00000022649)	SGCZ (ENSIPUG00000022660)	dlc1 (ENSIPUG00000022684)	asah1 (ENSIPUG00000022694)	ENSIPUG00000022701	frg1 (ENSIPUG00000022716)	fat1 (ENSIPUG00000023405)
Characiphysae_b	ANCESTRAL SPECIES	168											ENSGT00390000002721	ENSGT00390000013419	ENSGT01030000234532.B.e.a.a.b	ENSGT00940000155429.a.b	ENSGT00950000183177.a.b.b ##20	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00940000165832	ENSGT00940000154757.rb	ENSGT00390000001491.a	ENSGT00390000010434.a #17	ENSGT00730000111168	ENSGT00390000006284	ENSGT00940000158277.b.a.a	ENSGT00940000156295.g	ENSGT00940000154953.b	ENSGT00390000014876.a	ENSGT00940000155279.C.a.b.eb	ENSGT00940000159769.a.b	ENSGT01030000234940	ENSGT00970000197745
Electric eel	MODERN SPECIES	321										SLC1A1 (ENSEEEG00000024006)	tspan5b (ENSEEEG00000024009)	ENSEEEG00000024010	chic2 (ENSEEEG00000024013)	ENSEEEG00000024014	slc34a2a (ENSEEEG00000024020) ##20	rbpja (ENSEEEG00000024048) #22	ENSEEEG00000024052 #25	ENSEEEG00000024053	wdr26b (ENSEEEG00000024057)	fez2b (ENSEEEG00000024065)	ENSEEEG00000024067	slc35a1 (ENSEEEG00000024075)	rars2 (ENSEEEG00000024085)	ENSEEEG00000024103	syncrip (ENSEEEG00000024105)	ENSEEEG00000024118	HTR1E (ENSEEEG00000024123)	ENSEEEG00000024126	ENSEEEG00000024131	ENSEEEG00000024133	myl13 (ENSEEEG00000024135)
Characoidei	ANCESTRAL SPECIES	169						ENSGT00940000153246.a.a.b.a	ENSGT00940000155244.d	ENSGT01000000214976	ENSGT00390000011412	ENSGT00730000111645.b	ENSGT00390000002721	ENSGT00390000013419	ENSGT01030000234532.B.e.a.a.b	ENSGT00940000155429.a.b	ENSGT00950000183177.a.b.b ##20	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00940000165832	ENSGT00940000154757.rb.b	ENSGT00940000154757.rb.a.b	ENSGT00390000001491.a	ENSGT00390000010434.a #17	ENSGT00730000111168	ENSGT00390000006284	ENSGT00940000158277.b.a.a	ENSGT00940000156295.g	ENSGT00940000154953.b	ENSGT00390000014876.a	ENSGT00940000155279.C.a.b.eb	ENSGT00940000159769.a.b	ENSGT01030000234940
Red-bellied piranha	MODERN SPECIES	398			ENSPNAG00000015516	ENSPNAG00000015509	mttp (ENSPNAG00000015493)	ENSPNAG00000015468	xpa (ENSPNAG00000005330)	saraf (ENSPNAG00000015441)	slc24a2 (ENSPNAG00000015420)	SLC1A1 (ENSPNAG00000015408)	tspan5b (ENSPNAG00000015364)	fip1l1b (ENSPNAG00000015341)	chic2 (ENSPNAG00000015320)	ENSPNAG00000015288	slc34a2a (ENSPNAG00000015246) ##20	rbpja (ENSPNAG00000015210) #22	ENSPNAG00000015141 #25	ENSPNAG00000015072	DLC1 (ENSPNAG00000003353)	ENSPNAG00000003321	ENSPNAG00000014888
Mexicana tetra	MODERN SPECIES	13	XPA (ENSAMXG00000037903)	saraf (ENSAMXG00000034259)	xpa (ENSAMXG00000042548)	ENSAMXG00000041170	mttp (ENSAMXG00000034773)	ENSAMXG00000039444	B4GALT1 (ENSAMXG00000034558)	ENSAMXG00000039976	ENSAMXG00000036430	slc24a2 (ENSAMXG00000011114)	tspan5b (ENSAMXG00000011119)	fip1l1b (ENSAMXG00000011126)	chic2 (ENSAMXG00000011139)	ENSAMXG00000041153	slc34a2a (ENSAMXG00000011149) ##20	rbpja (ENSAMXG00000011180) #22	ENSAMXG00000035165 #25	ENSAMXG00000042886	ITLN1 (ENSAMXG00000033698)	ITLN1 (ENSAMXG00000003528)	ENSAMXG00000040338	ENSAMXG00000003407	HGSNAT (ENSAMXG00000003340)	pi4k2b (ENSAMXG00000003313) #17	SCLT1 (ENSAMXG00000003146)	zgc:77739 (ENSAMXG00000029818)	ENSAMXG00000035052	ENSAMXG00000044056	ENSAMXG00000033095	ENSAMXG00000033921	pcdh10a (ENSAMXG00000015613)
Cyprinoidei	ANCESTRAL SPECIES	55	ENSGT00390000006284	ENSGT00940000158277.b	ENSGT00940000156295.g	ENSGT00940000155249.g	ENSGT00940000154953.b	ENSGT00390000014876	ENSGT00940000155279.C.a.b	ENSGT00940000159769.a.b	ENSGT01030000234940	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b.e	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b.e	ENSGT00940000155857.e	ENSGT00950000183177.a.b.b ##20	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00940000163467.a.b.b.b.a.b	ENSGT00400000023727	ENSGT00940000165832	ENSGT00390000001491.a	ENSGT00390000010434.a #17	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000157146.a.b	ENSGT00390000012030.b.b	ENSGT00940000158380.b	ENSGT00950000183079.A.b.c.a.a	ENSGT00950000183012.B.b	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00390000006641
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	34	ENSGT00940000155249.g.b	ENSGT00940000154953.b.f	ENSGT00390000014876.d	ENSGT00940000155279.C.a.b.y	ENSGT00940000159769.a.b.a	ENSGT01030000234940.d	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b.e.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b.e.a	ENSGT00940000157037.a.c.b	ENSGT00940000162578.sc.a.a	ENSGT00390000003601.b.c.b	ENSGT00530000063690.a.a.s.b	ENSGT00950000183177.a.b.b.a ##20	ENSGT00390000005197.a.bb.a.a #22	ENSGT00390000000214.a.b.l.a #25	ENSGT00940000163467.a.b.b.b.a.b.b.b	ENSGT00400000023727.f	ENSGT00940000165832.b	ENSGT00390000001491.a.b	ENSGT00390000010434.a.b #17	ENSGT00950000183061.a.a.a.a.a.a.b.l	ENSGT00940000157146.a.b.g.a	ENSGT00390000012030.b.b.o	ENSGT00940000158380.b.a	ENSGT00950000183079.A.b.c.a.a.b	ENSGT00950000183012.B.b.q	ENSGT00940000155777.b.b	ENSGT00950000183026.A.a.a.b.a	ENSGT00390000006641.e
Goldfish	MODERN SPECIES	18	DHRSX (ENSCARG00000067422)	ENSCARG00000067434	cd99 (ENSCARG00000067439)	gyg2 (ENSCARG00000067457)	MXRA5 (ENSCARG00000067477)	PRKX (ENSCARG00000067496)	nlgn4xa (ENSCARG00000067524)	pudp (ENSCARG00000067609)	ppp2r2ca (ENSCARG00000067647)	WFS1 (ENSCARG00000014459)	crmp1 (ENSCARG00000014497)	fip1l1b (ENSCARG00000014818)	chic2 (ENSCARG00000014847)	ENSCARG00000014865	slc34a2a (ENSCARG00000014876) ##20	rbpja (ENSCARG00000014901) #22	ENSCARG00000014973 #25	ENSCARG00000015145	ENSCARG00000015166	ENSCARG00000015174	ENSCARG00000015183	ENSCARG00000015203	ENSCARG00000015207	camk2d2 (ENSCARG00000015249)	ENSCARG00000015579	hpf1 (ENSCARG00000019815)	elf2b (ENSCARG00000019847)	NOCT (ENSCARG00000019873)	ENSCARG00000019890	pcdh18a (ENSCARG00000019894)	pcdh10a (ENSCARG00000019909)
Cyprininae_a	ANCESTRAL SPECIES	49	ENSGT00940000154953.b.f	ENSGT00390000014876.d	ENSGT00940000155279.C.a.b.y	ENSGT00940000159769.b	ENSGT00940000159769.a.b.a	ENSGT01030000234940.d	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b.e.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b.e.a	ENSGT00940000157037.a.c.b	ENSGT00940000162578.sc.a.a	ENSGT00390000003601.b.c.b	ENSGT00530000063690.a.a.s.b	ENSGT00950000183177.a.b.b.a ##20	ENSGT00390000005197.a.bb.a.a #22	ENSGT00390000000214.a.b.l.a #25	ENSGT00940000163467.a.b.b.b.a.b.b.b	ENSGT00400000023727.f.a	ENSGT00940000165832.b	ENSGT00390000001491.a.b	ENSGT00390000010434.a.b #17	ENSGT00950000183061.a.a.a.a.a.a.b.l	ENSGT00940000157146.a.b.g.a	ENSGT00390000012030.b.b.o	ENSGT00940000158380.b.a	ENSGT00950000183079.A.b.c.a.a.b	ENSGT00950000183012.B.b.q	ENSGT00940000155777.b.b	ENSGT00950000183026.A.a.a.b.a	ENSGT00390000006641.e
Common carp reference	MODERN SPECIES	27	NOCT (ENSCCRG00000075894)	elf2b (ENSCCRG00000014216)	hpf1 (ENSCCRG00000014208)	ENSCCRG00000003798	camk2d2 (ENSCCRG00000060910)	ENSCCRG00000028861	ENSCCRG00000041832	ppp2r2ca (ENSCCRG00000074721)	WFS1 (ENSCCRG00000042271)	crmp1 (ENSCCRG00000004057)	ENSCCRG00000058830	fip1l1b (ENSCCRG00000058893)	chic2 (ENSCCRG00000013261)	ENSCCRG00000067877	slc34a2a (ENSCCRG00000013167) ##20	rbpja (ENSCCRG00000061797) #22	ENSCCRG00000013123 #25	ENSCCRG00000055036	ENSCCRG00000066133	ENSCCRG00000059596	ENSCCRG00000031623	pi4k2b (ENSCCRG00000023875) #17	DLC1 (ENSCCRG00000035479)	SGCZ (ENSCCRG00000043806)	tusc3 (ENSCCRG00000068963)	ENSCCRG00000059838	fgf20a (ENSCCRG00000015347)	MICU3 (ENSCCRG00000008535)	vps37a (ENSCCRG00000045372)	mtmr7b (ENSCCRG00000045414)	ENSCCRG00000014329
Golden-line barbel	MODERN SPECIES	24	NOCT (ENSSGRG00000000085)	elf2b (ENSSGRG00000000075)	hpf1 (ENSSGRG00000053975)	ENSSGRG00000052545	ENSSGRG00000052268	ENSSGRG00000052245	ENSSGRG00000052243	ppp2r2ca (ENSSGRG00000052240)	WFS1 (ENSSGRG00000052237)	crmp1 (ENSSGRG00000051777)	ENSSGRG00000051762	ENSSGRG00000051759	ENSSGRG00000051758	ENSSGRG00000051756	slc34a2a (ENSSGRG00000051753) ##20	rbpja (ENSSGRG00000051752) #22	ENSSGRG00000051702 #25	ENSSGRG00000051697	ENSSGRG00000051696	nlgn1 (ENSSGRG00000051692)	ENSSGRG00000051690	ENSSGRG00000051689	ect2 (ENSSGRG00000051452)	b3gnt5a (ENSSGRG00000051440)	ENSSGRG00000051439	SLC4A10 (ENSSGRG00000051226)	TBR1 (ENSSGRG00000051220)	psmd14 (ENSSGRG00000051129)	RBMS1 (ENSSGRG00000050837)	ITGB6 (ENSSGRG00000050832)	PLA2R1 (ENSSGRG00000050828)
Cyprininae	ANCESTRAL SPECIES	253	ENSGT00940000158277.b.d	ENSGT00940000156295.g.a	ENSGT00940000155249.g.a	ENSGT00940000154953.b.e	ENSGT00390000014876.c	ENSGT00940000155279.C.a.b.z	ENSGT00940000159769.a.b.b	ENSGT01030000234940.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b.e.a	ENSGT01030000234527.A.a.b.b.b.e.b	ENSGT00940000155857.e	ENSGT00940000162578.sc.a.b	ENSGT00390000003601.b.c.a	ENSGT00530000063690.a.a.s.a	ENSGT00950000183177.a.b.b.b ##20	ENSGT00390000005197.a.bb.a.b #22	ENSGT00390000000214.a.b.l.b #25	ENSGT00940000163467.a.b.b.b.a.b.b.a	ENSGT00940000163467.a.b.b.b.a.b.a	ENSGT00400000023727.e.b.a	ENSGT00940000165832.a	ENSGT00390000001491.a.a	ENSGT00390000010434.a.a #17	ENSGT00950000183061.a.a.a.a.a.a.b.k	ENSGT00940000173544	ENSGT00940000157146.a.b.g.b	ENSGT00390000012030.b.b.p	ENSGT00940000158380.b.b	ENSGT00950000183079.A.b.c.a.a.a	ENSGT00950000183012.B.b.r	ENSGT00940000155777.b.a
Cyprininae_a	ANCESTRAL SPECIES	82	ENSGT00940000156295.g.a	ENSGT00940000155249.g.a	ENSGT00940000154953.b.e	ENSGT00390000014876.c	ENSGT00940000155279.C.a.b.z	ENSGT00940000159769.a.b.b	ENSGT01030000234940.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b.e.a	ENSGT01030000234527.A.a.b.b.b.e.b	ENSGT00940000155857.e	ENSGT00940000162578.sc.a.b	ENSGT00390000003601.b.c.a	ENSGT00530000063690.a.a.s.a	ENSGT00530000063690.a.a.t.d	ENSGT00950000183177.a.b.b.b ##20	ENSGT00390000005197.a.bb.a.b #22	ENSGT00390000000214.a.b.l.b #25	ENSGT00940000163467.a.b.b.b.a.b.b.a	ENSGT00940000163467.a.b.b.b.a.b.a	ENSGT00400000023727.e.b.b	ENSGT00400000023727.f.b	ENSGT00940000165832.a	ENSGT00390000001491.a.a	ENSGT00390000010434.a.a #17	ENSGT00950000183061.a.a.a.a.a.a.b.k	ENSGT00940000173544	ENSGT00940000157146.a.b.g.b	ENSGT00390000012030.b.b.p	ENSGT00940000158380.b.b	ENSGT00950000183079.A.b.c.a.a.a	ENSGT00950000183012.B.b.r
Golden-line barbel	MODERN SPECIES	850	NOCT (ENSSGRG00000007242)	elf2b (ENSSGRG00000007273)	hpf1 (ENSSGRG00000007374)	ENSSGRG00000007456	ENSSGRG00000008913	ENSSGRG00000015221	ppp2r2ca (ENSSGRG00000015230)	crmp1 (ENSSGRG00000015243)	ENSSGRG00000015628	ENSSGRG00000015629	ENSSGRG00000015630	fip1l1b (ENSSGRG00000015631)	chic2 (ENSSGRG00000015632)	ENSSGRG00000015633	slc34a2a (ENSSGRG00000015656) ##20	rbpja (ENSSGRG00000016090) #22	STIM2 (ENSSGRG00000016094) #25	ENSSGRG00000016098	ENSSGRG00000016099	ENSSGRG00000016100	ENSSGRG00000016101	ENSSGRG00000016102	ENSSGRG00000016103	ENSSGRG00000016104
Common carp reference	MODERN SPECIES	22	ENSCCRG00000077743	ENSCCRG00000055755	ENSCCRG00000076789	NOCT (ENSCCRG00000021359)	elf2b (ENSCCRG00000050791)	hpf1 (ENSCCRG00000028101)	ENSCCRG00000000778	camk2d2 (ENSCCRG00000003954)	ENSCCRG00000061473	ENSCCRG00000074410	crmp1 (ENSCCRG00000000129)	ENSCCRG00000069086	fip1l1b (ENSCCRG00000067945)	ENSCCRG00000013089	ENSCCRG00000064023	rbpja (ENSCCRG00000013076) #22	ENSCCRG00000028945 #25	ENSCCRG00000061662	ENSCCRG00000013117	ENSCCRG00000045846	ENSCCRG00000045848	ENSCCRG00000013272	ENSCCRG00000001264	ENSCCRG00000082640	ENSCCRG00000068719	ENSCCRG00000079439	ENSCCRG00000068526	ENSCCRG00000038468	ENSCCRG00000079812	pi4k2b (ENSCCRG00000052856) #17	DLC1 (ENSCCRG00000054966)
Goldfish	MODERN SPECIES		ENSCARG00000002736	pcdh10a (ENSCARG00000002747)	pcdh18a (ENSCARG00000002770)	NOCT (ENSCARG00000002779)	elf2b (ENSCARG00000002791)	hpf1 (ENSCARG00000002807)	ENSCARG00000002912	camk2d2 (ENSCARG00000004077)	ENSCARG00000005372	ppp2r2ca (ENSCARG00000005389)	crmp1 (ENSCARG00000005408)	ENSCARG00000005486	fip1l1b (ENSCARG00000005492)	CHIC2 (ENSCARG00000005507)	ENSCARG00000005516	rbpja (ENSCARG00000005524) #22	STIM2 (ENSCARG00000005542) #25	ENSCARG00000005554	ENSCARG00000005560	ENSCARG00000005566	ENSCARG00000005570	ENSCARG00000005578	ENSCARG00000005585	ENSCARG00000005594	HGSNAT (ENSCARG00000005601)	pi4k2b (ENSCARG00000005920) #17	DLC1 (ENSCARG00000006600)	SGCZ (ENSCARG00000008236)	tusc3 (ENSCARG00000008273)	fgf20a (ENSCARG00000008334)	vps37a (ENSCARG00000008352)
Zebrafish	MODERN SPECIES		NOCT (ENSDARG00000078525)	elf2b (ENSDARG00000079626)	hpf1 (ENSDARG00000057114)	ENSDARG00000009026	camk2d2 (ENSDARG00000014273)	ENSDARG00000104795	ENSDARG00000056806	ppp2r2ca (ENSDARG00000056797)	WFS1 (ENSDARG00000062341)	crmp1 (ENSDARG00000056742)	DRD5 (ENSDARG00000037576)	fip1l1b (ENSDARG00000070431)	chic2 (ENSDARG00000022690)	ENSDARG00000056677	slc34a2a (ENSDARG00000012903) ##20	rbpja (ENSDARG00000003398) #22	ENSDARG00000074867 #25	ENSDARG00000109597	ENSDARG00000110922	ENSDARG00000039063	ENSDARG00000113383	ENSDARG00000078898	itln1 (ENSDARG00000007534)	HGSNAT (ENSDARG00000077804)	pi4k2b (ENSDARG00000013881) #17	DLC1 (ENSDARG00000079317)	SGCZ (ENSDARG00000106258)	tusc3 (ENSDARG00000078854)	fgf20a (ENSDARG00000007356)	MICU3 (ENSDARG00000078599)	vps37a (ENSDARG00000017119)
Clupeiformes	DUPLICATION
Clupeiformes	ANCESTRAL SPECIES	314									ENSGT00940000163587.a.b.b.e.a.d	ENSGT00950000183153.c.a.q	ENSGT00390000004049	ENSGT00940000166995	ENSGT01040000240503.B	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.bb.a.c #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00980000199058	ENSGT00940000159709
Atlantic herring	MODERN SPECIES	9	actl6b (ENSCHAG00000019451)	ENSCHAG00000019526	ENSCHAG00000019577	psmb6 (ENSCHAG00000019579)	trappc1 (ENSCHAG00000019601)	ENSCHAG00000019645	ENSCHAG00000020711	slc25a11 (ENSCHAG00000020713)	GCNT3 (ENSCHAG00000000456)	GCNT3 (ENSCHAG00000000482)	GCNT3 (ENSCHAG00000000517)	gabarapb (ENSCHAG00000000564)	CTDNEP1 (ENSCHAG00000000656)	MAN2B2 (ENSCHAG00000000975)	smim20 (ENSCHAG00000001433)	RBPJ (ENSCHAG00000001502) #22	CCKAR (ENSCHAG00000001739) #23	tbc1d19 (ENSCHAG00000001760) #24	STIM2 (ENSCHAG00000002167) #25	ENSCHAG00000003488	PCDH7 (ENSCHAG00000003521)	ENSCHAG00000003552	ENSCHAG00000004046	ENSCHAG00000004098	ENSCHAG00000004122	fam113 (ENSCHAG00000004145)	cskmt (ENSCHAG00000004244)	otub1b (ENSCHAG00000004283)	med11 (ENSCHAG00000004839)	arrb2b (ENSCHAG00000004997)	hmgb3a (ENSCHAG00000007920)
Denticle herring	MODERN SPECIES		ENSDCDG00000004611	ENSDCDG00000004614	ENSDCDG00000004618	zgc:92664 (ENSDCDG00000004620)	ache (ENSDCDG00000004625)	ENSDCDG00000004627	NAT16 (ENSDCDG00000004631)	nat16l (ENSDCDG00000004633)	ENSDCDG00000004635	ap1s1 (ENSDCDG00000004640)	serpine1 (ENSDCDG00000004683)	smim20 (ENSDCDG00000004732)	ENSDCDG00000004734	ENSDCDG00000004737	ENSDCDG00000004739	RBPJ (ENSDCDG00000004747) #22	CCKAR (ENSDCDG00000004766) #23	tbc1d19 (ENSDCDG00000004801) #24	STIM2 (ENSDCDG00000005046) #25	ENSDCDG00000005144	PCDH7 (ENSDCDG00000005151)	ENSDCDG00000005172	ENSDCDG00000005470	ENSDCDG00000005472	ENSDCDG00000013821	DTHD1 (ENSDCDG00000013827)	NWD2 (ENSDCDG00000013836)	ENSDCDG00000013845	zgc:194930 (ENSDCDG00000013851)	rell1 (ENSDCDG00000013858)	dvl2 (ENSDCDG00000013898)
Clupeiformes	ANCESTRAL SPECIES	22	ENSGT00940000157807.g.b	ENSGT00940000162502.a	ENSGT00940000154810	ENSGT00940000154259.b.b.c	ENSGT00940000155279.C.a.b	ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b.e	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b.e	ENSGT00940000155857.e	ENSGT00940000163443.m.b	ENSGT00390000003601.b	ENSGT00530000063690.a.a	ENSGT00950000183177.a.b.b ##20	ENSGT00390000005197.a.bb.a.d #22	ENSGT00390000000214.a.b.l #25	ENSGT00940000165832	ENSGT00390000001491.a	ENSGT00390000010434.a #17	ENSGT00940000159570.a	ENSGT00950000183001.b.b.a	ENSGT00940000156391.d	ENSGT00940000165038.a	ENSGT00940000162580.b.b	ENSGT00940000161707.a.a	ENSGT00390000004855	ENSGT00390000015386.a	ENSGT00940000164407.a.a	ENSGT00390000015863	ENSGT00940000160151
Atlantic herring	MODERN SPECIES	14	ENSCHAG00000022728	ENSCHAG00000022769	camk2d2 (ENSCHAG00000022862)	ANK2 (ENSCHAG00000024230)	hpf1 (ENSCHAG00000026715)	ENSCHAG00000026718	ppp2r2ca (ENSCHAG00000026727)	WFS1 (ENSCHAG00000026739)	crmp1 (ENSCHAG00000026792)	ENSCHAG00000027321	ENSCHAG00000027325	fip1l1b (ENSCHAG00000027328)	chic2 (ENSCHAG00000027334)	ENSCHAG00000027339	slc34a2a (ENSCHAG00000027347) ##20	rbpja (ENSCHAG00000027398) #22	STIM2 (ENSCHAG00000027421) #25	cryz (ENSCHAG00000000541)	ENSCHAG00000000711	selenoj (ENSCHAG00000000792)	sh3glb1b (ENSCHAG00000000980)	pgm2 (ENSCHAG00000001487)	TBC1D1 (ENSCHAG00000005502)	ENSCHAG00000006023	ENSCHAG00000006031	fam114a1 (ENSCHAG00000006058)	klhl5 (ENSCHAG00000006337)	WDR19 (ENSCHAG00000006411)	ENSCHAG00000008311	ENSCHAG00000008347	ENSCHAG00000008363
Denticle herring	MODERN SPECIES	14	ptgr1.1 (ENSDCDG00000025466)	zgc:56493 (ENSDCDG00000025458)	ENSDCDG00000025453	ENSDCDG00000025448	camk2d2 (ENSDCDG00000018215)	ANK2 (ENSDCDG00000001137)	hpf1 (ENSDCDG00000000208)	ENSDCDG00000030369	ppp2r2ca (ENSDCDG00000030366)	WFS1 (ENSDCDG00000030362)	crmp1 (ENSDCDG00000029099)	fip1l1b (ENSDCDG00000029051)	chic2 (ENSDCDG00000029045)	ENSDCDG00000029043	slc34a2a (ENSDCDG00000028976) ##20	rbpja (ENSDCDG00000028970) #22	ENSDCDG00000028226 #25	ENSDCDG00000028201	HGSNAT (ENSDCDG00000028196)	pi4k2b (ENSDCDG00000028190) #17	ENSDCDG00000028188	adra2c (ENSDCDG00000028185)	CPZ (ENSDCDG00000028117)	CPZ (ENSDCDG00000027994)	hmx4 (ENSDCDG00000027983)	ENSDCDG00000027980	adra2c (ENSDCDG00000027977)	lrpap1 (ENSDCDG00000027965)	DOK7 (ENSDCDG00000027960)	rgs12b (ENSDCDG00000027950)	htt (ENSDCDG00000024621)
Euteleosteomorpha	ANCESTRAL SPECIES	103	ENSGT01060000248860	ENSGT00940000157580.a.b	ENSGT00940000160654	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000177384	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT01030000236196	ENSGT00940000155527.j.b	ENSGT00390000017890.b.a	ENSGT00390000011749	ENSGT00410000029064	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00400000023727	ENSGT00940000165832	ENSGT00940000154757.xb.b	ENSGT00940000163443	ENSGT00940000155857.e.a	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00940000155475.g	ENSGT00390000014876	ENSGT00940000155279.C.a.b	ENSGT00940000159769.a.b	ENSGT00390000018004	ENSGT00940000160246.c.a
Protacanthopterygii	ANCESTRAL SPECIES	159	ENSGT00940000160654	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT00940000153617.C.e.a	ENSGT00940000155804.k.b	ENSGT00940000155586.A	ENSGT00940000155527.j.b	ENSGT00390000017890.b.a	ENSGT00390000011749	ENSGT00410000029064	ENSGT00390000001491.a	ENSGT00980000201267	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00400000023727	ENSGT00940000165832	ENSGT00940000157037.a.c.b	ENSGT00940000164532.b	ENSGT00940000164532.a	ENSGT00940000156228.p	ENSGT00940000167973
Northern pike	DUPLICATION
Northern pike	MODERN SPECIES	24	kdm4c (ENSELUG00000010046)	ENSELUG00000001468	ENSELUG00000027629	ENSELUG00000026828	TYRP1 (ENSELUG00000010406)	ENSELUG00000010446	ADGRL3 (ENSELUG00000010500)	ENSELUG00000031260	DCTN6 (ENSELUG00000010524)	gtf2e2 (ENSELUG00000010556)	smim18 (ENSELUG00000010534)	ENSELUG00000010588	ENSELUG00000028012	rbpja (ENSELUG00000034120) #22	ENSELUG00000026247	rbpja (ENSELUG00000010624) #22	STIM2 (ENSELUG00000010815) #25	ENSELUG00000027435	ENSELUG00000010919	ENSELUG00000010945	ENSELUG00000010981	ENSELUG00000028614	RNF38 (ENSELUG00000032719)	CRIP2 (ENSELUG00000026773)	CI105 (ENSELUG00000011089)	ENSELUG00000000391	ENSELUG00000011127	ENSELUG00000011134	ENSELUG00000011185	ENSELUG00000011159	ENSELUG00000011192
Northern pike	MODERN SPECIES	24	smc2 (ENSELUG00000009845)	ecpas (ENSELUG00000009962)	kdm4c (ENSELUG00000010046)	ENSELUG00000001468	ENSELUG00000027629	ENSELUG00000026828	TYRP1 (ENSELUG00000010406)	ENSELUG00000010446	ADGRL3 (ENSELUG00000010500)	ENSELUG00000031260	DCTN6 (ENSELUG00000010524)	gtf2e2 (ENSELUG00000010556)	smim18 (ENSELUG00000010534)	ENSELUG00000010588	ENSELUG00000028012	rbpja (ENSELUG00000034120) #22	ENSELUG00000026247	rbpja (ENSELUG00000010624) #22	STIM2 (ENSELUG00000010815) #25	ENSELUG00000027435	ENSELUG00000010919	ENSELUG00000010945	ENSELUG00000010981	ENSELUG00000028614	RNF38 (ENSELUG00000032719)	CRIP2 (ENSELUG00000026773)	CI105 (ENSELUG00000011089)	ENSELUG00000000391	ENSELUG00000011127	ENSELUG00000011134	ENSELUG00000011185
Salmoninae	ANCESTRAL SPECIES	1628																ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l.d #25
Salmoninae_a	ANCESTRAL SPECIES	609																ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l.d.b #25
Salmo	ANCESTRAL SPECIES	273										ENSGT00940000155527.j.b.d.a	ENSGT00390000017890.b.a	ENSGT00410000029064.a	ENSGT00390000011749	ENSGT00410000029064.b	ENSGT00390000001491.a.i	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l.d.a #25
Atlantic salmon	MODERN SPECIES	640											ENSSSAG00000107806	ENSSSAG00000065203	SMIM18 (ENSSSAG00000120419)	gtf2e2 (ENSSSAG00000040128)	ENSSSAG00000035612	ENSSSAG00000112233 #22	ENSSSAG00000004256 #25
Oncorhynchus	ANCESTRAL SPECIES	506																ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l.d.b #25
Rainbow trout	MODERN SPECIES	182								ENSOMYG00000076978	ENSOMYG00000073461	ENSOMYG00000076584	ENSOMYG00000057008	ENSOMYG00000076050	SMIM18 (ENSOMYG00000053319)	gtf2e2 (ENSOMYG00000070860)	ENSOMYG00000059637	ENSOMYG00000064747 #22	ENSOMYG00000069257 #25	ENSOMYG00000035779	ENSOMYG00000039760	ENSOMYG00000059560
Acanthomorphata	ANCESTRAL SPECIES	40	ENSGT00940000179958	ENSGT00940000157580.a.b	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000177384	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT00940000155804.k.b	ENSGT01030000236196	ENSGT00940000155527.j.b	ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000017890.b.a	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00940000165832	ENSGT00940000154757.xb.b	ENSGT00940000163443	ENSGT00940000155857.e.a	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00940000155475.g	ENSGT00390000014876
Euacanthomorphacea	ANCESTRAL SPECIES	3	ENSGT00940000179958	ENSGT00940000157580.a.b	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000177384	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT00940000155804.k.b	ENSGT01030000236196	ENSGT00940000155527.j.b	ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000017890.b.a	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00940000165832	ENSGT00940000154757.xb.b	ENSGT00940000163443	ENSGT00940000155857.e.a	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00940000155475.g	ENSGT00390000014876	ENSGT00940000155279.C.a.b	ENSGT00940000159769.a.b	ENSGT00940000160757	ENSGT00940000175443	ENSGT00390000018004
Percomorphaceae	ANCESTRAL SPECIES	17	ENSGT00940000179958	ENSGT00940000157580.a.b	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000177384	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT00940000155804.k.b	ENSGT01030000236196	ENSGT00940000155527.j.b	ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000017890.b.a	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00940000165832	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00940000155475.g	ENSGT00390000014876	ENSGT00940000155279.C.a.b	ENSGT00940000159769.a.b	ENSGT00940000160757	ENSGT00940000175443	ENSGT00390000018004	ENSGT00940000160246.c.a	ENSGT00940000165381	ENSGT00940000158826
Percomorphaceae_B	ANCESTRAL SPECIES		ENSGT00940000157580.a.b	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000177384	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT00940000155804.k.b	ENSGT01030000236196	ENSGT00940000155527.j.b	ENSGT00990000203806	ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000017890.b.a	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00400000023727.a.b	ENSGT00400000023727.a.a	ENSGT00400000023727.b	ENSGT00940000165832	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00940000155475.g	ENSGT00390000014876	ENSGT00940000155279.C.a.b	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159769.a.b	ENSGT00940000160757
Ovalentaria	ANCESTRAL SPECIES		ENSGT00940000157580.a.b	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000177384	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT00940000155804.k.b	ENSGT01030000236196	ENSGT00940000177878	ENSGT00940000155527.j.b	ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000017890.b.a	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00400000023727.b	ENSGT00940000165832	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00940000155475.g	ENSGT00390000014876	ENSGT00940000155279.C.a.b.f	ENSGT00940000155279.C.a.b.e.a	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159769.a.b	ENSGT00940000160757	ENSGT00940000175443
Atherinomorphae	ANCESTRAL SPECIES	20	ENSGT00940000162578	ENSGT00940000157580.a.b	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000177384	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT00940000155804.k.b	ENSGT00940000155586.A	ENSGT00940000155527.j.b	ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000017890.b.a	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00400000023727.b	ENSGT00940000165832	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00940000155475.g	ENSGT00390000014876	ENSGT00940000155279.C.a.b.f	ENSGT00940000155279.C.a.b.e.a	ENSGT00940000159769.a.b	ENSGT00940000160757	ENSGT00940000175443	ENSGT00530000063425.a.a.a.b	ENSGT00390000018004
Oryzias	ANCESTRAL SPECIES	15	ENSGT00390000003601.b	ENSGT00940000162578	ENSGT00940000157580.a.b	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT00940000155804.k.b	ENSGT00940000155586.A	ENSGT00940000155527.j.b	ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000017890.b.a	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00400000023727.b	ENSGT00940000165832	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00940000155475.g	ENSGT00390000014876	ENSGT00940000155279.C.a.b.f	ENSGT00940000159769.a.b	ENSGT00940000160757	ENSGT00940000175443	ENSGT00530000063425.a.a.a.b	ENSGT00390000018004	ENSGT00940000160246.c.a
Oryzias_b	ANCESTRAL SPECIES	29	ENSGT00390000003601.b	ENSGT00940000162578	ENSGT00940000157580.a.b	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT00940000155804.k.b	ENSGT00940000155586.A	ENSGT00940000155527.j.b	ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000017890.b.a	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00400000023727.b	ENSGT00940000165832	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00940000155475.g	ENSGT00390000014876	ENSGT00940000155279.C.a.b.f	ENSGT00940000159769.a.b	ENSGT00940000160757	ENSGT00940000175443	ENSGT00530000063425.a.a.a.b	ENSGT00390000018004	ENSGT00940000160246.c.a
Javanese ricefish	MODERN SPECIES		chic2 (ENSOJAG00000017109)	fip1l1b (ENSOJAG00000017102)	kitb (ENSOJAG00000016645)	clockb (ENSOJAG00000016253)	exoc1l (ENSOJAG00000016206)	smc2 (ENSOJAG00000015443)	kdm4c (ENSOJAG00000013891)	ENSOJAG00000008199	TYRP1 (ENSOJAG00000007953)	ENSOJAG00000007820	ADGRL3 (ENSOJAG00000004774)	smim18 (ENSOJAG00000004223)	gtf2e2 (ENSOJAG00000004072)	DCTN6 (ENSOJAG00000003897)	HGSNAT (ENSOJAG00000003456)	rbpja (ENSOJAG00000003267) #22	STIM2 (ENSOJAG00000003027) #25	ENSOJAG00000002956	ENSOJAG00000002948	crmp1 (ENSOJAG00000002315)	WFS1 (ENSOJAG00000002110)	ppp2r2ca (ENSOJAG00000002089)	ENSOJAG00000002069	hpf1 (ENSOJAG00000002044)	ENSOJAG00000001074	camk2d2 (ENSOJAG00000000420)	CXCL8 (ENSOJAG00000000132)	ENSOJAG00000000078	FBXO10 (ENSOJAG00000013714)	polr1e (ENSOJAG00000013699)	ZBTB5 (ENSOJAG00000013690)
Indian medaka	MODERN SPECIES	21	kitb (ENSOMEG00000015661)	clockb (ENSOMEG00000015412)	exoc1l (ENSOMEG00000000377)	smc2 (ENSOMEG00000014982)	ecpas (ENSOMEG00000014908)	ENSOMEG00000001027	ENSOMEG00000014791	ENSOMEG00000014764	TYRP1 (ENSOMEG00000014715)	ENSOMEG00000014698	ADGRL3 (ENSOMEG00000014640)	gtf2e2 (ENSOMEG00000014610)	smim18 (ENSOMEG00000014593)	DCTN6 (ENSOMEG00000014586)	ENSOMEG00000014565	rbpja (ENSOMEG00000014525) #22	ENSOMEG00000014488 #25	ENSOMEG00000014461	crmp1 (ENSOMEG00000014427)	WFS1 (ENSOMEG00000014371)	ppp2r2ca (ENSOMEG00000014344)	ENSOMEG00000014313	hpf1 (ENSOMEG00000014263)	ENSOMEG00000014166	ENSOMEG00000014138	ENSOMEG00000014101	ENSOMEG00000014053	camk2d2 (ENSOMEG00000014019)	ENSOMEG00000013850	ENSOMEG00000013730	FBXO10 (ENSOMEG00000013304)
Oryzias_a	ANCESTRAL SPECIES	23	ENSGT00940000162578	ENSGT00940000155626	ENSGT00940000157580.a.b	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT00940000155804.k.b	ENSGT00940000155586.A	ENSGT00940000155527.j.b	ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000017890.b.a	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00400000023727.b	ENSGT00940000165832	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00940000155475.g	ENSGT00390000014876	ENSGT00940000155279.C.a.b.f	ENSGT00940000159769.a.b	ENSGT00940000162559	ENSGT00940000175443	ENSGT00530000063425.a.a.a.b	ENSGT00390000018004	ENSGT00940000160246.c.a
Chinese medaka	MODERN SPECIES	272	chic2 (ENSOSIG00000021464)	fip1l1b (ENSOSIG00000021461)	kitb (ENSOSIG00000021456)	clockb (ENSOSIG00000021261)	exoc1l (ENSOSIG00000021194)	smc2 (ENSOSIG00000021184)	ENSOSIG00000021167	ENSOSIG00000001740	TYRP1 (ENSOSIG00000000687)	ENSOSIG00000000668	ENSOSIG00000000656	smim18 (ENSOSIG00000000650)	gtf2e2 (ENSOSIG00000000648)	DCTN6 (ENSOSIG00000000644)	ENSOSIG00000000637	rbpja (ENSOSIG00000000585) #22	STIM2 (ENSOSIG00000000579) #25
Cyprinodontiformes	ANCESTRAL SPECIES	18	ENSGT00940000162578	ENSGT00940000157580.a.b	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000177384	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT00940000155804.k.b	ENSGT00940000155586.A	ENSGT00940000155527.j.b	ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000017890.b.a	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00400000023727.b	ENSGT00940000165832	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00940000155475.g	ENSGT00390000014876	ENSGT00940000155279.C.a.b.f	ENSGT00940000155279.C.a.b.e.a	ENSGT00940000159769.a.b	ENSGT00940000160757	ENSGT00940000175443	ENSGT00530000063425.a.a.a.b	ENSGT00390000018004
Cyprinodontoidei	ANCESTRAL SPECIES	15	ENSGT00940000162578	ENSGT00940000157580.a.b	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000177384	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT00940000155804.k.b	ENSGT00940000155586.A	ENSGT00940000155527.j.b	ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000017890.b.a	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00400000023727.b.i	ENSGT00400000023727.b.j	ENSGT00940000165832	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00940000155475.g	ENSGT00390000014876	ENSGT00940000155279.C.a.b.f	ENSGT00940000155279.C.a.a.l	ENSGT00940000155279.C.a.b.e.a	ENSGT00940000159769.a.b	ENSGT00940000160757	ENSGT00940000175443
Poeciliinae	ANCESTRAL SPECIES	9	ENSGT00940000157580.a.b	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000177384	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT00940000155804.k.b	ENSGT00940000155586.A	ENSGT00940000155527.j.b	ENSGT00940000177878	ENSGT00390000011749	ENSGT00410000029064	ENSGT00390000017890.b.a	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00400000023727.b.i	ENSGT00400000023727.b.j	ENSGT00940000165832	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00940000155475.g	ENSGT00390000014876	ENSGT00940000155279.C.a.b.f	ENSGT00940000155279.C.a.a.l	ENSGT00940000159769.a.b	ENSGT00940000160757	ENSGT00940000175443	ENSGT00530000063425.a.a.a.b
Poecilia	ANCESTRAL SPECIES	6	ENSGT00940000162578	ENSGT00940000157580.a.b	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT00940000155804.k.b	ENSGT00940000155586.A	ENSGT00940000155527.j.b	ENSGT00940000177878	ENSGT00390000011749	ENSGT00410000029064	ENSGT00390000017890.b.a	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00400000023727.b.i	ENSGT00400000023727.b.j	ENSGT00940000165832	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00940000155475.g	ENSGT00390000014876	ENSGT00940000155279.C.a.b.f	ENSGT00940000159769.a.b	ENSGT00940000160757	ENSGT00940000175443	ENSGT00530000063425.a.a.a.b	ENSGT00390000018004
NAME_6	ANCESTRAL SPECIES	47	ENSGT00940000162578	ENSGT00940000157580.a.b	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT00940000155804.k.b	ENSGT00940000155586.A	ENSGT00940000155527.j.b	ENSGT00940000177878	ENSGT00390000011749	ENSGT00410000029064	ENSGT00390000017890.b.a	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00400000023727.b.i	ENSGT00400000023727.b.j	ENSGT00940000165832	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00940000155475.g	ENSGT00390000014876	ENSGT00940000155279.C.a.b.f	ENSGT00940000159769.a.b	ENSGT00940000160757	ENSGT00940000175443	ENSGT00530000063425.a.a.a.b	ENSGT00390000018004
Sailfin molly	MODERN SPECIES	533										ADGRL3 (ENSPLAG00000021073)	ENSPLAG00000021021	gtf2e2 (ENSPLAG00000021007)	smim18 (ENSPLAG00000020984)	ENSPLAG00000020962	ENSPLAG00000020920	rbpja (ENSPLAG00000020897) #22	STIM2 (ENSPLAG00000020878) #25
Amazon molly	MODERN SPECIES	295	fip1l1b (ENSPFOG00000014745)	kitb (ENSPFOG00000014822)	clockb (ENSPFOG00000015083)	exoc1l (ENSPFOG00000015164)	smc2 (ENSPFOG00000015169)	ecpas (ENSPFOG00000015283)	ENSPFOG00000015484	ENSPFOG00000015661	TYRP1 (ENSPFOG00000016088)	ENSPFOG00000016179	ADGRL3 (ENSPFOG00000016241)	gtf2e2 (ENSPFOG00000016382)	smim18 (ENSPFOG00000020146)	ENSPFOG00000016433	ENSPFOG00000016453	rbpja (ENSPFOG00000016494) #22	STIM2 (ENSPFOG00000016556) #25	ENSPFOG00000024524	ENSPFOG00000016592	ENSPFOG00000016595	crmp1 (ENSPFOG00000016623)	WFS1 (ENSPFOG00000016702)	ppp2r2ca (ENSPFOG00000016742)	ENSPFOG00000016766	hpf1 (ENSPFOG00000016797)	ANK2 (ENSPFOG00000016848)	camk2d2 (ENSPFOG00000017035)	ENSPFOG00000017033
Guppy	MODERN SPECIES	439	fip1l1b (ENSPREG00000012535)	kitb (ENSPREG00000012489)	CLOCK (ENSPREG00000011939)	exoc1l (ENSPREG00000011864)	smc2 (ENSPREG00000011769)	ecpas (ENSPREG00000011321)	ENSPREG00000011230	ENSPREG00000011036	TYRP1 (ENSPREG00000010917)	ENSPREG00000010850	ADGRL3 (ENSPREG00000010586)	smim18 (ENSPREG00000010507)	gtf2e2 (ENSPREG00000010486)	DCTN6 (ENSPREG00000010472)	ENSPREG00000010444	rbpja (ENSPREG00000010297) #22	STIM2 (ENSPREG00000010192) #25	ENSPREG00000010148	ENSPREG00000010138	ENSPREG00000010129	crmp1 (ENSPREG00000010103)	WFS1 (ENSPREG00000010077)	ppp2r2ca (ENSPREG00000010056)	hpf1 (ENSPREG00000010038)	ANK2 (ENSPREG00000009960)	camk2d2 (ENSPREG00000009806)	ENSPREG00000009575	ENSPREG00000009499	FBXO10 (ENSPREG00000009485)	polr1e (ENSPREG00000009470)	ENSPREG00000009458
Platyfish	MODERN SPECIES	19	clockb (ENSXMAG00000028575)	exoc1l (ENSXMAG00000022359)	smc2 (ENSXMAG00000004544)	ENSXMAG00000027231	ENSXMAG00000026276	kdm4c (ENSXMAG00000023645)	ENSXMAG00000011984	TYRP1 (ENSXMAG00000012045)	ENSXMAG00000012077	ADGRL3 (ENSXMAG00000012102)	ENSXMAG00000021800	gtf2e2 (ENSXMAG00000012141)	smim18 (ENSXMAG00000019693)	ENSXMAG00000023015	ENSXMAG00000012177	rbpja (ENSXMAG00000012207) #22	STIM2 (ENSXMAG00000012254) #25	ENSXMAG00000026434	ENSXMAG00000012258	crmp1 (ENSXMAG00000012278)	WFS1 (ENSXMAG00000012351)	ppp2r2ca (ENSXMAG00000012375)	ENSXMAG00000013671	hpf1 (ENSXMAG00000012400)	ENSXMAG00000012408	ENSXMAG00000021771	ENSXMAG00000028088	camk2d2 (ENSXMAG00000012446)	ENSXMAG00000026893	ENSXMAG00000026664	FBXO10 (ENSXMAG00000012473)
NAME_4	ANCESTRAL SPECIES	388												ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000017890.b.a	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00400000023727.b.i
Sheepshead minnow	MODERN SPECIES	985												gtf2e2 (ENSCVAG00000013488)	smim18 (ENSCVAG00000013467)	ENSCVAG00000013460	HGSNAT (ENSCVAG00000013431)	rbpja (ENSCVAG00000013395) #22	STIM2 (ENSCVAG00000013338) #25	ENSCVAG00000013331
Mummichog	MODERN SPECIES	992												smim18 (ENSFHEG00000015409)	gtf2e2 (ENSFHEG00000015401)	DCTN6 (ENSFHEG00000015367)	ENSFHEG00000015358	rbpja (ENSFHEG00000015345) #22	STIM2 (ENSFHEG00000015262) #25
Aplocheiloidei	ANCESTRAL SPECIES	32	ENSGT00390000003601.b	ENSGT00940000162578	ENSGT00940000157580.a.b	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT00940000155804.k.b	ENSGT00940000155586.A	ENSGT00940000155527.j.b	ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000017890.b.a	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00400000023727.b	ENSGT00940000165832	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000014876	ENSGT00940000155279.C.a.b.f	ENSGT00940000159769.a.b	ENSGT00940000160757	ENSGT00940000175443	ENSGT00530000063425.a.a.a.b	ENSGT00390000018004	ENSGT00940000160246.c.a	ENSGT00940000165381
Mangrove rivulus	MODERN SPECIES	86	kitb (ENSKMAG00000021945)	clockb (ENSKMAG00000021952)	exoc1l (ENSKMAG00000021957)	smc2 (ENSKMAG00000021962)	ecpas (ENSKMAG00000021979)	ENSKMAG00000021994	ENSKMAG00000022021	TYRP1 (ENSKMAG00000000177)	ENSKMAG00000000249	ENSKMAG00000000275	ADGRL3 (ENSKMAG00000000299)	gtf2e2 (ENSKMAG00000000332)	smim18 (ENSKMAG00000000378)	DCTN6 (ENSKMAG00000000386)	HGSNAT (ENSKMAG00000000428)	rbpja (ENSKMAG00000000445) #22	ENSKMAG00000000490 #25	ENSKMAG00000000501	ENSKMAG00000000514	ENSKMAG00000000524	crmp1 (ENSKMAG00000000535)	ENSKMAG00000000620	WFS1 (ENSKMAG00000000636)	ppp2r2ca (ENSKMAG00000000648)
Turquoise killifish	MODERN SPECIES	1449																rbpja (ENSNFUG00015016395) #22
Ovalentaria_B	ANCESTRAL SPECIES	4	ENSGT00940000157580.a.b	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000177384	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT00940000155804.k.b	ENSGT01030000236196	ENSGT00940000177878	ENSGT00940000155527.j.b	ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000017890.b.a	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00400000023727.b	ENSGT00940000165832	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00940000155475.g	ENSGT00390000014876	ENSGT00940000155279.C.a.b.f	ENSGT00940000159769.a.b	ENSGT00980000198676	ENSGT00940000175443	ENSGT00530000063425.a.a.a.b	ENSGT00390000018004	ENSGT00940000160246.c.a
Pomacentridae	ANCESTRAL SPECIES	8	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000177384	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT00940000155804.k.b	ENSGT00940000155586.A	ENSGT00940000155586.B	ENSGT00940000177878	ENSGT00940000155527.j.b	ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000017890.b.a	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00400000023727.b	ENSGT00940000165832	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00940000155475.g	ENSGT00390000014876	ENSGT00940000177601	ENSGT00940000155279.C.a.b.f	ENSGT00940000155279.C.a.b.e.a	ENSGT00940000159769.a.b	ENSGT00980000198676	ENSGT00940000175443	ENSGT00530000063425.a.a.a.b
Pomacentridae_A	ANCESTRAL SPECIES		ENSGT00940000157580.a.b	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000177384	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT00940000155804.k.b	ENSGT00940000155586.A	ENSGT00940000177878	ENSGT00940000155527.j.b	ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000017890.b.a	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00400000023727.b	ENSGT00940000165832	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00940000155475.g	ENSGT00390000014876	ENSGT00940000155279.C.a.b.f	ENSGT00940000159769.a.b	ENSGT00980000198676	ENSGT00940000175443	ENSGT00530000063425.a.a.a.b	ENSGT00390000018004	ENSGT00940000160246.c.a
Amphiprion	ANCESTRAL SPECIES		ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000177384	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT00940000155804.k.b	ENSGT00940000155586.A	ENSGT00940000177878	ENSGT00940000155527.j.b	ENSGT00940000159842.pc.a.a.b.b.b.a	ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000017890.b.a	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00400000023727.b	ENSGT00940000165832	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00940000155475.g	ENSGT00390000014876	ENSGT00940000155279.C.a.b.f	ENSGT00940000159769.a.b	ENSGT00980000198676	ENSGT00940000175443	ENSGT00530000063425.a.a.a.b	ENSGT00390000018004	ENSGT00940000160246.c.a
Orange clownfish	MODERN SPECIES	17	clockb (ENSAPEG00000022094)	exoc1l (ENSAPEG00000022070)	smc2 (ENSAPEG00000021997)	ecpas (ENSAPEG00000021886)	kdm4c (ENSAPEG00000021825)	ENSAPEG00000021741	TYRP1 (ENSAPEG00000021687)	ENSAPEG00000021642	ENSAPEG00000021616	ADGRL3 (ENSAPEG00000021421)	ENSAPEG00000021388	smim18 (ENSAPEG00000021366)	gtf2e2 (ENSAPEG00000021340)	DCTN6 (ENSAPEG00000021316)	HGSNAT (ENSAPEG00000021302)	rbpja (ENSAPEG00000021264) #22	ENSAPEG00000021067 #25	ENSAPEG00000021025	ENSAPEG00000020969	crmp1 (ENSAPEG00000020908)	WFS1 (ENSAPEG00000020866)	ppp2r2ca (ENSAPEG00000020822)	ENSAPEG00000020790	hpf1 (ENSAPEG00000020760)	ENSAPEG00000020724	ENSAPEG00000020656	camk2d2 (ENSAPEG00000020635)	ENSAPEG00000020615	ENSAPEG00000020603	FBXO10 (ENSAPEG00000020593)	polr1e (ENSAPEG00000020581)
Clown anemonefish	MODERN SPECIES	1451							ENSAOCG00000003549	TYRP1 (ENSAOCG00000003527)	ENSAOCG00000003491	ADGRL3 (ENSAOCG00000003408)	mibp2 (ENSAOCG00000003342)	gtf2e2 (ENSAOCG00000000085)	smim18 (ENSAOCG00000003332)	DCTN6 (ENSAOCG00000003326)	HGSNAT (ENSAOCG00000003320)	rbpja (ENSAOCG00000003307) #22	ENSAOCG00000003287 #25
Spiny chromis	MODERN SPECIES	363							ENSAPOG00000002897	TYRP1 (ENSAPOG00000002999)	ENSAPOG00000003157	ENSAPOG00000003232	ADGRL3 (ENSAPOG00000003416)	smim18 (ENSAPOG00000003456)	gtf2e2 (ENSAPOG00000003480)	DCTN6 (ENSAPOG00000003515)	HGSNAT (ENSAPOG00000003539)	rbpja (ENSAPOG00000003569) #22	STIM2 (ENSAPOG00000003635) #25
Bicolor damselfish	MODERN SPECIES	299	clockb (ENSSPAG00000017640)	exoc1l (ENSSPAG00000017743)	smc2 (ENSSPAG00000017757)	ENSSPAG00000017806	ecpas (ENSSPAG00000017833)	ENSSPAG00000017961	ENSSPAG00000017995	ENSSPAG00000018086	TYRP1 (ENSSPAG00000018509)	ENSSPAG00000018541	ADGRL3 (ENSSPAG00000018591)	gtf2e2 (ENSSPAG00000018750)	smim18 (ENSSPAG00000018779)	DCTN6 (ENSSPAG00000018797)	ENSSPAG00000018839	rbpja (ENSSPAG00000018868) #22	STIM2 (ENSSPAG00000018902) #25	ENSSPAG00000018914	ENSSPAG00000018928	crmp1 (ENSSPAG00000018953)	WFS1 (ENSSPAG00000018975)	ppp2r2ca (ENSSPAG00000018993)	ENSSPAG00000019008	ENSSPAG00000019019	hpf1 (ENSSPAG00000019040)	ENSSPAG00000019071	ENSSPAG00000019101	ENSSPAG00000019128
Cichlidae	ANCESTRAL SPECIES	3	ENSGT00940000162578	ENSGT00940000179958	ENSGT00940000157580.a.b	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT00940000155804.k.b	ENSGT00940000155586.A	ENSGT00940000155527.j.b	ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000017890.b.a	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00940000165832	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00940000155475.g	ENSGT00390000014876	ENSGT00940000155279.C.a.b.f	ENSGT00940000159769.a.b	ENSGT00980000198676	ENSGT00940000175443	ENSGT00530000063425.a.a.a.b	ENSGT00390000018004	ENSGT00940000160246.c.a	ENSGT00940000165381
Pseudocrenilabrinae	ANCESTRAL SPECIES	3	ENSGT00940000162578	ENSGT00940000179958	ENSGT00940000157580.a.b	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT00940000155804.k.b	ENSGT00940000155586.A	ENSGT00940000155527.j.b	ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000017890.b.a	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00940000165832	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00940000155475.g	ENSGT00390000014876	ENSGT00940000155279.C.a.b.f	ENSGT00940000159769.a.b	ENSGT00980000198676	ENSGT00940000175443	ENSGT00530000063425.a.a.a.b	ENSGT00390000018004	ENSGT00940000160246.c.a	ENSGT00940000165381
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	5	ENSGT00940000162578	ENSGT00940000179958	ENSGT00940000157580.a.b	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT00940000155804.k.b	ENSGT00940000155586.A	ENSGT00940000155527.j.b	ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000017890.b.a	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00940000165832	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00940000155475.g	ENSGT00390000014876	ENSGT00940000155279.C.a.b.f	ENSGT00940000159769.a.b	ENSGT00980000198676	ENSGT00940000175443	ENSGT00530000063425.a.a.a.b	ENSGT00390000018004	ENSGT00940000160246.c.a	ENSGT00940000165381
Haplochromini	ANCESTRAL SPECIES	3	ENSGT00390000003601.b	ENSGT00940000162578	ENSGT00940000157580.a.b	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT00940000155804.k.b	ENSGT00940000155586.A	ENSGT00940000155527.j.b	ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000017890.b.a	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00940000165832	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00940000155475.g	ENSGT00390000014876	ENSGT00940000155279.C.a.b.f	ENSGT00940000159769.a.b	ENSGT00980000198676	ENSGT00940000175443	ENSGT00530000063425.a.a.a.b	ENSGT00390000018004	ENSGT00940000160246.c.a	ENSGT00940000165381
Burton s mouthbrooder	MODERN SPECIES	593	kitb (ENSHBUG00000014002)	clockb (ENSHBUG00000014187)	exoc1l (ENSHBUG00000014198)	smc2 (ENSHBUG00000014284)	ecpas (ENSHBUG00000014406)	ENSHBUG00000014453	ENSHBUG00000014479	ENSHBUG00000000425	TYRP1 (ENSHBUG00000014613)	ENSHBUG00000014642	ADGRL3 (ENSHBUG00000014840)	smim18 (ENSHBUG00000014870)	gtf2e2 (ENSHBUG00000014885)	DCTN6 (ENSHBUG00000014920)	HGSNAT (ENSHBUG00000014941)	rbpja (ENSHBUG00000015000) #22	ENSHBUG00000015027 #25
Haplochromini_A	ANCESTRAL SPECIES	2	ENSGT00390000003601.b	ENSGT00940000162578	ENSGT00940000157580.a.b	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT00940000155804.k.b	ENSGT00940000155586.A	ENSGT00940000155527.j.b	ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000017890.b.a	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00940000165832	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00940000155475.g	ENSGT00390000014876	ENSGT00940000155279.C.a.b.f	ENSGT00940000159769.a.b	ENSGT00980000198676	ENSGT00940000175443	ENSGT00530000063425.a.a.a.b	ENSGT00390000018004	ENSGT00940000160246.c.a	ENSGT00940000165381
P. nyererei	MODERN SPECIES	482	kitb (ENSPNYG00000015929)	clockb (ENSPNYG00000015652)	exoc1l (ENSPNYG00000015577)	smc2 (ENSPNYG00000015529)	ecpas (ENSPNYG00000015414)	kdm4c (ENSPNYG00000015367)	ENSPNYG00000015301	TYRP1 (ENSPNYG00000015263)	ENSPNYG00000015247	ADGRL3 (ENSPNYG00000015202)	ENSPNYG00000015185	smim18 (ENSPNYG00000015178)	gtf2e2 (ENSPNYG00000015163)	DCTN6 (ENSPNYG00000015135)	HGSNAT (ENSPNYG00000015105)	rbpja (ENSPNYG00000015075) #22	STIM2 (ENSPNYG00000015047) #25	ENSPNYG00000015030	ENSPNYG00000015013
Haplochromini_B	ANCESTRAL SPECIES	8	ENSGT00940000162578	ENSGT00940000157580.a.b	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT00940000181745	ENSGT00940000155804.k.b	ENSGT00940000155586.A	ENSGT00940000155527.j.b	ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000017890.b.a	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00400000023727.a.a.c	ENSGT01100000263949.b	ENSGT00940000165832	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00940000155475.g	ENSGT00390000014876	ENSGT00940000155279.C.a.b.f	ENSGT00940000159769.a.b	ENSGT00980000198676	ENSGT00940000175443	ENSGT00530000063425.a.a.a.b	ENSGT00390000018004
Eastern happy	MODERN SPECIES	18	clockb (ENSACLG00000010583)	exoc1l (ENSACLG00000010957)	smc2 (ENSACLG00000010966)	ecpas (ENSACLG00000011055)	ENSACLG00000011182	ENSACLG00000011213	ENSACLG00000011227	ENSACLG00000011719	TYRP1 (ENSACLG00000011752)	ENSACLG00000011772	ADGRL3 (ENSACLG00000011861)	gtf2e2 (ENSACLG00000011939)	smim18 (ENSACLG00000011954)	DCTN6 (ENSACLG00000011976)	HGSNAT (ENSACLG00000012041)	rbpja (ENSACLG00000012078) #22	STIM2 (ENSACLG00000012115) #25	ENSACLG00000012155	ENSACLG00000012186	ENSACLG00000012221	crmp1 (ENSACLG00000012241)	WFS1 (ENSACLG00000012306)	ppp2r2ca (ENSACLG00000012319)	ENSACLG00000012374	hpf1 (ENSACLG00000012405)	ENSACLG00000012468	camk2d2 (ENSACLG00000012862)	ENSACLG00000013497	ENSACLG00000013625	FBXO10 (ENSACLG00000013644)	ZBTB5 (ENSACLG00000013658)
Zebra mbuna	MODERN SPECIES	1109	clockb (ENSMZEG00005023826)	exoc1l (ENSMZEG00005023825)	smc2 (ENSMZEG00005023824)	ecpas (ENSMZEG00005023823)	ENSMZEG00005023822	ENSMZEG00005023821	ENSMZEG00005023820	ENSMZEG00005023819	TYRP1 (ENSMZEG00005023818)	ENSMZEG00005023817	ADGRL3 (ENSMZEG00005023776)	smim18 (ENSMZEG00005023754)	gtf2e2 (ENSMZEG00005023750)	DCTN6 (ENSMZEG00005023748)	HGSNAT (ENSMZEG00005023744)	rbpja (ENSMZEG00005023737) #22	STIM2 (ENSMZEG00005023732) #25	ENSMZEG00005023729	ENSMZEG00005023726	ENSMZEG00005023725	WDR19 (ENSMZEG00005023719)	rfc1 (ENSMZEG00005023710)	rpl9 (ENSMZEG00005023706)	lias (ENSMZEG00005023703)	ugdh (ENSMZEG00005023700)	map9 (ENSMZEG00005023698)	smim14 (ENSMZEG00005023696)	UBE2K (ENSMZEG00005023693)	pds5a (ENSMZEG00005023687)	n4bp2 (ENSMZEG00005023686)	rhoh (ENSMZEG00005023683)
Lyretail cichlid	MODERN SPECIES	301	ENSNBRG00000017814	ENSNBRG00000017792	CLOCK (ENSNBRG00000017733)	exoc1l (ENSNBRG00000017710)	smc2 (ENSNBRG00000017664)	ecpas (ENSNBRG00000017570)	kdm4c (ENSNBRG00000017522)	ENSNBRG00000017456	TYRP1 (ENSNBRG00000017425)	ENSNBRG00000017338	ADGRL3 (ENSNBRG00000017271)	smim18 (ENSNBRG00000017249)	gtf2e2 (ENSNBRG00000017242)	DCTN6 (ENSNBRG00000017226)	HGSNAT (ENSNBRG00000017214)	rbpja (ENSNBRG00000017183) #22	STIM2 (ENSNBRG00000017167) #25	ENSNBRG00000017148	crmp1 (ENSNBRG00000017119)	WFS1 (ENSNBRG00000017107)	ppp2r2ca (ENSNBRG00000017086)	ENSNBRG00000017070	hpf1 (ENSNBRG00000017051)	ENSNBRG00000017029	ENSNBRG00000017003	ENSNBRG00000016961	camk2d2 (ENSNBRG00000016936)	ENSNBRG00000016923	ENSNBRG00000016909	FBXO10 (ENSNBRG00000016842)	polr1e (ENSNBRG00000016822)
Nile tilapia	MODERN SPECIES	18	fip1l1b (ENSONIG00000008785)	kitb (ENSONIG00000008788)	clockb (ENSONIG00000008797)	exoc1l (ENSONIG00000008809)	smc2 (ENSONIG00000008811)	ecpas (ENSONIG00000008818)	kdm4c (ENSONIG00000008824)	ENSONIG00000008832	TYRP1 (ENSONIG00000008846)	ENSONIG00000029433	ADGRL3 (ENSONIG00000008860)	smim18 (ENSONIG00000043015)	gtf2e2 (ENSONIG00000008865)	DCTN6 (ENSONIG00000008868)	HGSNAT (ENSONIG00000008872)	rbpja (ENSONIG00000043047) #22	STIM2 (ENSONIG00000008875) #25	ENSONIG00000042062	ENSONIG00000037076	ENSONIG00000008880	crmp1 (ENSONIG00000008887)	WFS1 (ENSONIG00000008897)	ppp2r2ca (ENSONIG00000008902)	ENSONIG00000008905	hpf1 (ENSONIG00000008911)	ENSONIG00000008914	camk2d2 (ENSONIG00000008917)	ENSONIG00000029754	ENSONIG00000040454	FBXO10 (ENSONIG00000008918)	polr1e (ENSONIG00000008921)
Midas cichlid	MODERN SPECIES	274										ADGRL3 (ENSACIG00000014545)	ENSACIG00000014529	smim18 (ENSACIG00000014520)	gtf2e2 (ENSACIG00000014507)	DCTN6 (ENSACIG00000014499)	ENSACIG00000014471	rbpja (ENSACIG00000014433) #22	STIM2 (ENSACIG00000014212) #25	ENSACIG00000014185	ENSACIG00000014168	ENSACIG00000014159	ENSACIG00000014151	ENSACIG00000014138	ENSACIG00000014131	ENSACIG00000014115	crmp1 (ENSACIG00000012963)	WFS1 (ENSACIG00000012828)	ppp2r2ca (ENSACIG00000012807)	ENSACIG00000012764	hpf1 (ENSACIG00000012747)	ENSACIG00000012737	ENSACIG00000012702
Percomorphaceae_C	ANCESTRAL SPECIES	3	ENSGT00940000162578	ENSGT00940000157580.a.b	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT00940000155804.k.b	ENSGT00940000155586.A	ENSGT00940000155527.j.b	ENSGT00990000203806	ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000017890.b.a	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00400000023727.a.b	ENSGT00400000023727.a.a	ENSGT00400000023727.b	ENSGT00940000165832	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00940000155475.g	ENSGT00390000014876	ENSGT00940000155279.C.a.b	ENSGT00940000159769.a.b	ENSGT00940000160757	ENSGT00940000175443	ENSGT00530000063425.a.a.a.b
Eupercaria	ANCESTRAL SPECIES	2	ENSGT00940000162578	ENSGT00940000157580.a.b	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT00940000155804.k.b	ENSGT00940000155586.A	ENSGT00940000155527.j.b	ENSGT00990000203806	ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000017890.b.a	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00400000023727.b	ENSGT00940000165832	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00940000155475.g	ENSGT00390000014876	ENSGT00940000155279.C.a.b	ENSGT00940000159769.a.b	ENSGT00940000160757	ENSGT00940000175443	ENSGT00530000063425.a.a.a.b	ENSGT00390000018004	ENSGT00940000160246.c.a
Eupecaria_A	ANCESTRAL SPECIES	3	ENSGT00940000162578	ENSGT00940000157580.a.b	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT00940000155804.k.b	ENSGT00940000155586.A	ENSGT00940000155527.j.b	ENSGT00990000203806	ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000017890.b.a	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00400000023727.b	ENSGT00940000165832	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00940000155475.g	ENSGT00390000014876	ENSGT00940000155279.C.a.b	ENSGT00940000159769.a.b	ENSGT00940000160757	ENSGT00940000175443	ENSGT00530000063425.a.a.a.b	ENSGT00390000018004	ENSGT00940000160246.c.a
Ballan wrasse	MODERN SPECIES	240	kitb (ENSLBEG00000028818)	ENSLBEG00000028813	exoc1l (ENSLBEG00000028809)	smc2 (ENSLBEG00000028807)	ecpas (ENSLBEG00000028805)	kdm4c (ENSLBEG00000028803)	ENSLBEG00000028801	TYRP1 (ENSLBEG00000028800)	ENSLBEG00000028798	ENSLBEG00000028797	ENSLBEG00000028794	smim18 (ENSLBEG00000028792)	gtf2e2 (ENSLBEG00000028790)	DCTN6 (ENSLBEG00000028789)	ENSLBEG00000028788	rbpja (ENSLBEG00000028786) #22	STIM2 (ENSLBEG00000028785) #25	ENSLBEG00000028784
Eupecaria_B	ANCESTRAL SPECIES	1	ENSGT00940000162578	ENSGT00940000157580.a.b	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT00940000155804.k.b	ENSGT00940000155586.A	ENSGT00940000155527.j.b	ENSGT00990000203806	ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000017890.b.a	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00400000023727.b	ENSGT00940000165832	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00940000155475.g	ENSGT00390000014876	ENSGT00940000155279.C.a.b	ENSGT00940000159769.a.b	ENSGT00940000162559	ENSGT00940000160757	ENSGT00940000175443	ENSGT00530000063425.a.a.a.b	ENSGT00390000018004
Eupecaria_C	ANCESTRAL SPECIES	14	ENSGT00390000003601.b	ENSGT00940000162578	ENSGT00940000157580.a.b	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT00940000155804.k.b	ENSGT00940000155586.A	ENSGT00940000155527.j.b	ENSGT00390000011749	ENSGT00410000029064	ENSGT00390000017890.b.a	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00400000023727.b	ENSGT00940000165832	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00940000155475.g	ENSGT00390000014876	ENSGT00940000155279.C.a.b	ENSGT00940000159769.a.b	ENSGT00940000162559	ENSGT00940000175443	ENSGT00530000063425.a.a.a.b	ENSGT00390000018004	ENSGT00940000160246.c.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	13	ENSGT00390000003601.b	ENSGT00940000162578	ENSGT00940000157580.a.b	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT00940000155804.k.b	ENSGT00940000155586.A	ENSGT00940000155527.j.b	ENSGT00390000011749	ENSGT00410000029064	ENSGT00390000017890.b.a	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00400000023727.b	ENSGT00940000165832	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00940000155475.g	ENSGT00390000014876	ENSGT00940000155279.C.a.b	ENSGT00940000159769.a.b	ENSGT00940000162559	ENSGT00940000175443	ENSGT00530000063425.a.a.a.b	ENSGT00390000018004	ENSGT00940000160246.c.a
European seabass	MODERN SPECIES	20	ENSDLAG00005012563	ENSDLAG00005012617	ENSDLAG00005013892	exoc1l (ENSDLAG00005014437)	smc2 (ENSDLAG00005014443)	ENSDLAG00005014517	ENSDLAG00005015624	ENSDLAG00005015926	ENSDLAG00005022973	ENSDLAG00005022999	ENSDLAG00005023107	ENSDLAG00005024835	SMIM18 (ENSDLAG00005024842)	ENSDLAG00005030887	ENSDLAG00005024854	rbpja (ENSDLAG00005024887) #22	ENSDLAG00005024913 #25	ENSDLAG00005024916	crmp1 (ENSDLAG00005024927)	WFS1 (ENSDLAG00005029500)	ppp2r2ca (ENSDLAG00005031161)	ENSDLAG00005025024	hpf1 (ENSDLAG00005025041)	ENSDLAG00005025100	camk2d2 (ENSDLAG00005032299)	ENSDLAG00005014206	FBXO10 (ENSDLAG00005025905)	ENSDLAG00005025906	ZBTB5 (ENSDLAG00005033499)	ENSDLAG00005025909	ENSDLAG00005025923
Large yellow croaker	MODERN SPECIES	481	chic2 (ENSLCRG00005012496)	kitb (ENSLCRG00005012510)	clockb (ENSLCRG00005012516)	exoc1l (ENSLCRG00005012561)	smc2 (ENSLCRG00005012562)	ecpas (ENSLCRG00005012572)	kdm4c (ENSLCRG00005012860)	ENSLCRG00005012949	TYRP1 (ENSLCRG00005014121)	ENSLCRG00005014151	ADGRL3 (ENSLCRG00005014203)	gtf2e2 (ENSLCRG00005017199)	smim18 (ENSLCRG00005017201)	ENSLCRG00005017204	ENSLCRG00005017247	rbpja (ENSLCRG00005017286) #22	STIM2 (ENSLCRG00005017288) #25	ENSLCRG00005017291	ENSLCRG00005017292	crmp1 (ENSLCRG00005017311)	WFS1 (ENSLCRG00005020444)	ppp2r2ca (ENSLCRG00005020446)	ENSLCRG00005020451	hpf1 (ENSLCRG00005020456)	ENSLCRG00005020483	camk2d2 (ENSLCRG00005022490)	ENSLCRG00005022995	CXCL8 (ENSLCRG00005022997)	polr1e (ENSLCRG00005022998)	UBA6 (ENSLCRG00005023013)	POLQ (ENSLCRG00005023449)
Gilthead seabream	MODERN SPECIES		kitb (ENSSAUG00010025076)	clockb (ENSSAUG00010025019)	ENSSAUG00010025005	exoc1l (ENSSAUG00010025004)	smc2 (ENSSAUG00010024993)	ecpas (ENSSAUG00010024842)	kdm4c (ENSSAUG00010024690)	ENSSAUG00010023740	TYRP1 (ENSSAUG00010023675)	ENSSAUG00010023668	ADGRL3 (ENSSAUG00010021014)	smim18 (ENSSAUG00010020991)	gtf2e2 (ENSSAUG00010020988)	DCTN6 (ENSSAUG00010020983)	ENSSAUG00010020981	rbpja (ENSSAUG00010020951) #22	STIM2 (ENSSAUG00010020885) #25	ENSSAUG00010020883	ENSSAUG00010020881	ENSSAUG00010020880	ENSSAUG00010020879	crmp1 (ENSSAUG00010020754)	WFS1 (ENSSAUG00010020749)	ppp2r2ca (ENSSAUG00010020748)	ENSSAUG00010020746	hpf1 (ENSSAUG00010020745)	ENSSAUG00010010856	camk2d2 (ENSSAUG00010006026)	ENSSAUG00010005953	ENSSAUG00010005949	FBXO10 (ENSSAUG00010005945)
Perciformes	ANCESTRAL SPECIES	2	ENSGT00940000162578	ENSGT00940000157580.a.b	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT00940000155804.k.b	ENSGT00940000155586.A	ENSGT00940000155527.j.b	ENSGT00990000203806	ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000017890.b.a	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00940000165832	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00940000155475.g	ENSGT00390000014876	ENSGT00940000155279.C.a.b	ENSGT00940000159769.a.b	ENSGT00940000160757	ENSGT00940000175443	ENSGT00530000063425.a.a.a.b	ENSGT00390000018004	ENSGT00940000160246.c.a	ENSGT00940000165381
Cottioidei	ANCESTRAL SPECIES	3	ENSGT00940000162578	ENSGT00940000157580.a.b	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT00940000155804.k.b	ENSGT00940000155586.A	ENSGT00940000155527.j.b	ENSGT00990000203806	ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000017890.b.a	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00940000165832	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00940000155475.g	ENSGT00390000014876	ENSGT00940000155279.C.a.b	ENSGT00940000159769.a.b	ENSGT00980000198676	ENSGT00530000063425.a.a.a.b	ENSGT00390000018004	ENSGT00940000160246.c.a	ENSGT00940000165381	ENSGT00940000158826
Lumpfish	MODERN SPECIES		ENSCLMG00005002613	ENSCLMG00005002611	clockb (ENSCLMG00005002021)	exoc1l (ENSCLMG00005002002)	smc2 (ENSCLMG00005001997)	ecpas (ENSCLMG00005001275)	kdm4c (ENSCLMG00005001264)	ENSCLMG00005000943	TYRP1 (ENSCLMG00005000925)	ENSCLMG00005000921	ADGRL3 (ENSCLMG00005000920)	smim18 (ENSCLMG00005000919)	gtf2e2 (ENSCLMG00005000918)	DCTN6 (ENSCLMG00005000917)	HGSNAT (ENSCLMG00005000902)	rbpja (ENSCLMG00005000865) #22	ENSCLMG00005000859 #25	ENSCLMG00005000858	crmp1 (ENSCLMG00005000855)	WFS1 (ENSCLMG00005000842)	ppp2r2ca (ENSCLMG00005000837)	hpf1 (ENSCLMG00005000835)	ENSCLMG00005000823	ENSCLMG00005000820	camk2d2 (ENSCLMG00005000488)	ENSCLMG00005000452	FBXO10 (ENSCLMG00005000443)	polr1e (ENSCLMG00005000434)	ZBTB5 (ENSCLMG00005000427)	grhprb (ENSCLMG00005000421)	UBA6 (ENSCLMG00005000338)
Stickleback	MODERN SPECIES	4	fip1l1b (ENSGACG00000015946)	kitb (ENSGACG00000015944)	clockb (ENSGACG00000015939)	smc2 (ENSGACG00000015927)	ecpas (ENSGACG00000015925)	kdm4c (ENSGACG00000015922)	ENSGACG00000015921	TYRP1 (ENSGACG00000015912)	ENSGACG00000015905	ENSGACG00000015904	ENSGACG00000015901	smim18 (ENSGACG00000015899)	gtf2e2 (ENSGACG00000015893)	DCTN6 (ENSGACG00000015891)	HGSNAT (ENSGACG00000015890)	rbpja (ENSGACG00000015888) #22
Perciformes_a	ANCESTRAL SPECIES		ENSGT00390000003601.b	ENSGT00940000162578	ENSGT00940000157580.a.b	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT00940000155804.k.b	ENSGT00940000155586.A	ENSGT00940000155527.j.b	ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000017890.b.a	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00940000165832	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00940000155475.g	ENSGT00390000014876	ENSGT00940000155279.C.a.b	ENSGT00940000159769.a.b	ENSGT00940000160757	ENSGT00940000175443	ENSGT00530000063425.a.a.a.b	ENSGT00390000018004	ENSGT00940000160246.c.a	ENSGT00940000165381
Pike perch	MODERN SPECIES	69	exoc1l (ENSSLUG00000010916)	smc2 (ENSSLUG00000010884)	ecpas (ENSSLUG00000008642)	kdm4c (ENSSLUG00000008356)	ENSSLUG00000025842	TYRP1 (ENSSLUG00000025429)	hnrnpd (ENSSLUG00000025425)	ENSSLUG00000025422	ENSSLUG00000025416	ENSSLUG00000025413	ENSSLUG00000025412	smim18 (ENSSLUG00000025410)	gtf2e2 (ENSSLUG00000025406)	DCTN6 (ENSSLUG00000025399)	HGSNAT (ENSSLUG00000025391)	rbpja (ENSSLUG00000025378) #22	STIM2 (ENSSLUG00000025345) #25	ENSSLUG00000025328	crmp1 (ENSSLUG00000025211)	WFS1 (ENSSLUG00000025185)	ppp2r2ca (ENSSLUG00000025184)	ENSSLUG00000025180	hpf1 (ENSSLUG00000025177)	ENSSLUG00000025165	ENSSLUG00000025157	ENSSLUG00000025153	camk2d2 (ENSSLUG00000024418)	ENSSLUG00000024221	ENSSLUG00000024216	FBXO10 (ENSSLUG00000024214)	polr1e (ENSSLUG00000024209)
Channel bull blenny	MODERN SPECIES		kitb (ENSCGOG00000017978)	clockb (ENSCGOG00000017276)	exoc1l (ENSCGOG00000017250)	ENSCGOG00000017249	smc2 (ENSCGOG00000016701)	ecpas (ENSCGOG00000016277)	ENSCGOG00000016252	ENSCGOG00000003397	TYRP1 (ENSCGOG00000003047)	ENSCGOG00000003030	ADGRL3 (ENSCGOG00000001017)	smim18 (ENSCGOG00000000954)	gtf2e2 (ENSCGOG00000000950)	DCTN6 (ENSCGOG00000000927)	ENSCGOG00000000921	rbpja (ENSCGOG00000000823) #22	STIM2 (ENSCGOG00000000558) #25	ENSCGOG00000000437	crmp1 (ENSCGOG00000000289)	WFS1 (ENSCGOG00000000176)	ppp2r2ca (ENSCGOG00000000122)	ENSCGOG00000000076	hpf1 (ENSCGOG00000023505)	ENSCGOG00000021379	camk2d2 (ENSCGOG00000016254)	ENSCGOG00000016095	ENSCGOG00000016071	polr1e (ENSCGOG00000015973)	ZBTB5 (ENSCGOG00000015972)	grhprb (ENSCGOG00000015954)	UBA6 (ENSCGOG00000013976)
Percomorphaceae_D	ANCESTRAL SPECIES		ENSGT00390000003601.b	ENSGT00940000162578	ENSGT00940000157580.a.b	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT00940000155804.k.b	ENSGT00940000155586.A	ENSGT00940000155527.j.b	ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000017890.b.a	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00400000023727.a.b	ENSGT00400000023727.a.a	ENSGT00400000023727.b	ENSGT00940000165832	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00940000155475.g	ENSGT00390000014876	ENSGT00940000155279.C.a.b	ENSGT00940000159769.a.b	ENSGT00940000160757	ENSGT00940000175443	ENSGT00530000063425.a.a.a.b
Anabantaria	ANCESTRAL SPECIES	1	ENSGT00390000003601.b	ENSGT00940000162578	ENSGT00940000157580.a.b	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT00940000155804.k.b	ENSGT00940000155586.A	ENSGT00940000155527.j.b	ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000017890.b.a	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00400000023727.b	ENSGT00940000165832	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00940000155475.g	ENSGT00390000014876	ENSGT00940000155279.C.a.b	ENSGT00940000159769.a.b	ENSGT00940000160757	ENSGT00940000175443	ENSGT00530000063425.a.a.a.b	ENSGT00390000018004	ENSGT00940000160246.c.a
Zig-zag eel	MODERN SPECIES		ENSMAMG00000002686	ENSMAMG00000002670	ENSMAMG00000002562	ENSMAMG00000002550	ENSMAMG00000002529	ENSMAMG00000002446	ENSMAMG00000002219	ENSMAMG00000002197	ENSMAMG00000028189	ENSMAMG00000028522	ENSMAMG00000025250	SMIM18 (ENSMAMG00000002067)	GTF2E2 (ENSMAMG00000002039)	DCTN6 (ENSMAMG00000002028)	ENSMAMG00000002005	rbpja (ENSMAMG00000001939) #22	ENSMAMG00000001901 #25	ENSMAMG00000001890	ENSMAMG00000024407	crmp1 (ENSMAMG00000001735)	WFS1 (ENSMAMG00000001700)	ppp2r2ca (ENSMAMG00000001659)	ENSMAMG00000001584	hpf1 (ENSMAMG00000001555)	ENSMAMG00000001435	camk2d2 (ENSMAMG00000001316)	ENSMAMG00000001287	ENSMAMG00000001272	FBXO10 (ENSMAMG00000001233)	ENSMAMG00000001260	ZBTB5 (ENSMAMG00000001195)
Anabantoidei	ANCESTRAL SPECIES		ENSGT00390000003601.b	ENSGT00940000162578	ENSGT00940000157580.a.b	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT00940000155804.k.b	ENSGT00940000155586.A	ENSGT00940000155527.j.b	ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000017890.b.a	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00940000165832	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00940000155475.g	ENSGT00390000014876	ENSGT00940000155279.C.a.b	ENSGT00940000159769.a.b	ENSGT00940000160757	ENSGT00940000175443	ENSGT00530000063425.a.a.a.b	ENSGT00390000018004	ENSGT00940000160246.c.a	ENSGT00940000165381
Climbing perch	MODERN SPECIES		ENSATEG00000021757	ENSATEG00000021737	ENSATEG00000021687	exoc1l (ENSATEG00000021675)	ENSATEG00000021647	ENSATEG00000021558	ENSATEG00000021528	ENSATEG00000021335	ENSATEG00000021292	ENSATEG00000029001	ENSATEG00000021184	SMIM18 (ENSATEG00000021153)	GTF2E2 (ENSATEG00000021140)	DCTN6 (ENSATEG00000021125)	ENSATEG00000021103	rbpja (ENSATEG00000021086) #22	ENSATEG00000020936 #25	ENSATEG00000020897	crmp1 (ENSATEG00000020872)	WFS1 (ENSATEG00000020851)	ppp2r2ca (ENSATEG00000020822)	hpf1 (ENSATEG00000020795)	ENSATEG00000020709	camk2d2 (ENSATEG00000020671)	ENSATEG00000020661	CXCL8 (ENSATEG00000028656)	FBXO10 (ENSATEG00000020631)	ENSATEG00000020609	ZBTB5 (ENSATEG00000020589)	ENSATEG00000020561	ENSATEG00000020397
Siamese fighting fish	MODERN SPECIES		fip1l1b (ENSBSLG00000012315)	kitb (ENSBSLG00000012404)	clockb (ENSBSLG00000012519)	exoc1l (ENSBSLG00000012657)	smc2 (ENSBSLG00000012664)	ecpas (ENSBSLG00000012695)	kdm4c (ENSBSLG00000012714)	ENSBSLG00000012935	TYRP1 (ENSBSLG00000020744)	ENSBSLG00000020767	ENSBSLG00000020834	gtf2e2 (ENSBSLG00000022545)	smim18 (ENSBSLG00000022561)	DCTN6 (ENSBSLG00000022566)	HGSNAT (ENSBSLG00000022618)	rbpja (ENSBSLG00000022652) #22	ENSBSLG00000022659 #25	ENSBSLG00000022796	crmp1 (ENSBSLG00000022943)	WFS1 (ENSBSLG00000023569)	ppp2r2ca (ENSBSLG00000023578)	ENSBSLG00000023594	hpf1 (ENSBSLG00000023652)	ENSBSLG00000023696	camk2d2 (ENSBSLG00000024485)	ENSBSLG00000024701	ENSBSLG00000024710	FBXO10 (ENSBSLG00000024838)	polr1e (ENSBSLG00000024846)	ZBTB5 (ENSBSLG00000024854)	grhprb (ENSBSLG00000024865)
Carangaria	ANCESTRAL SPECIES		ENSGT00390000003601.b	ENSGT00940000162578	ENSGT00940000157580.a.b	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT00940000155804.k.b	ENSGT00940000155586.A	ENSGT00940000155527.j.b	ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000017890.b.a	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00400000023727.a.b	ENSGT00400000023727.a.a	ENSGT00940000165832	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00940000155475.g	ENSGT00390000014876	ENSGT00940000155279.C.a.b	ENSGT00940000159769.a.b	ENSGT00940000160757	ENSGT00940000175443	ENSGT00530000063425.a.a.a.b	ENSGT00390000018004
Carangaria_A	ANCESTRAL SPECIES	14	ENSGT00390000003601.b	ENSGT00940000162578	ENSGT00940000157580.a.b	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT00940000155804.k.b	ENSGT00940000155586.A	ENSGT00940000155527.j.b	ENSGT00390000011749	ENSGT00410000029064	ENSGT00390000017890.b.a	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00400000023727.a.b	ENSGT00400000023727.a.a	ENSGT00940000165832	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00940000155475.g	ENSGT00390000014876	ENSGT00940000155279.C.a.b	ENSGT00940000159769.a.b	ENSGT00940000160757	ENSGT00940000175443	ENSGT00530000063425.a.a.a.b	ENSGT00390000018004
Seriola	ANCESTRAL SPECIES	29	ENSGT00390000003601.b	ENSGT00940000162578	ENSGT00940000157580.a.b	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT00940000155804.k.b	ENSGT00940000155586.A	ENSGT00940000155527.j.b	ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000017890.b.a	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00940000165832	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00940000155475.g	ENSGT00390000014876	ENSGT00940000155279.C.a.b	ENSGT00940000159769.a.b	ENSGT00940000160757	ENSGT00940000175443	ENSGT00530000063425.a.a.a.b	ENSGT00390000018004	ENSGT00940000160246.c.a	ENSGT00940000165381
Greater amberjack	MODERN SPECIES	102	exoc1l (ENSSDUG00000004042)	smc2 (ENSSDUG00000003986)	ecpas (ENSSDUG00000003877)	ENSSDUG00000003831	ENSSDUG00000003819	ENSSDUG00000003802	ENSSDUG00000003734	TYRP1 (ENSSDUG00000003709)	ENSSDUG00000003680	ADGRL3 (ENSSDUG00000003616)	ENSSDUG00000003605	smim18 (ENSSDUG00000003601)	gtf2e2 (ENSSDUG00000003582)	DCTN6 (ENSSDUG00000003551)	ENSSDUG00000003524	rbpja (ENSSDUG00000003478) #22	STIM2 (ENSSDUG00000003300) #25
Yellowtail amberjack	MODERN SPECIES	2982	exoc1l (ENSSLDG00000024231)	smc2 (ENSSLDG00000024240)	ecpas (ENSSLDG00000024289)	kdm4c (ENSSLDG00000024407)	ENSSLDG00000024480	ENSSLDG00000024512	ENSSLDG00000024546	TYRP1 (ENSSLDG00000024554)	ENSSLDG00000024571	ADGRL3 (ENSSLDG00000024579)	ENSSLDG00000024602	gtf2e2 (ENSSLDG00000024609)	smim18 (ENSSLDG00000024621)	DCTN6 (ENSSLDG00000024624)	ENSSLDG00000024640	rbpja (ENSSLDG00000024657) #22	STIM2 (ENSSLDG00000024677) #25	ENSSLDG00000024689	ENSSLDG00000024695	crmp1 (ENSSLDG00000024703)	WFS1 (ENSSLDG00000024747)	ppp2r2ca (ENSSLDG00000024757)	ENSSLDG00000024772	ENSSLDG00000024778	hpf1 (ENSSLDG00000024781)	ANK2 (ENSSLDG00000024800)	camk2d2 (ENSSLDG00000024872)	ENSSLDG00000024899	ENSSLDG00000024905	FBXO10 (ENSSLDG00000024907)	polr1e (ENSSLDG00000024918)
Barramundi perch	MODERN SPECIES	237	fip1l1b (ENSLCAG00010027597)	kitb (ENSLCAG00010027617)	clockb (ENSLCAG00010027638)	exoc1l (ENSLCAG00010027647)	smc2 (ENSLCAG00010027653)	ecpas (ENSLCAG00010027680)	kdm4c (ENSLCAG00010027698)	ENSLCAG00010027801	TYRP1 (ENSLCAG00010028014)	ENSLCAG00010028016	ADGRL3 (ENSLCAG00010028018)	gtf2e2 (ENSLCAG00010028020)	smim18 (ENSLCAG00010028021)	ENSLCAG00010028022	HGSNAT (ENSLCAG00010028023)	rbpja (ENSLCAG00010028024) #22	STIM2 (ENSLCAG00010028025) #25	ENSLCAG00010028026	ENSLCAG00010028027	ENSLCAG00010028028	ENSLCAG00010028029	crmp1 (ENSLCAG00010028030)	WFS1 (ENSLCAG00010028032)	ppp2r2ca (ENSLCAG00010028033)	ENSLCAG00010028034	hpf1 (ENSLCAG00010028035)	ENSLCAG00010028036
Pleuronectoidei	ANCESTRAL SPECIES	21	ENSGT00390000003601.b	ENSGT00940000162578	ENSGT00940000157580.a.b	ENSGT00940000162193	ENSGT00550000074857	ENSGT00940000153612.A	ENSGT00940000166168	ENSGT00940000153617.C.f	ENSGT00940000155804.k.b	ENSGT00940000155586.A	ENSGT00940000155527.j.b	ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000017890.b.a	ENSGT00390000001491.a	ENSGT00390000005197.a.bb.a #22	ENSGT00390000000214.a.b.l #25	ENSGT00940000165832	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000016928.c	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00940000155475.g	ENSGT00390000014876	ENSGT00940000155279.C.a.b	ENSGT00940000159769.a.b	ENSGT00940000160757	ENSGT00940000175443	ENSGT00530000063425.a.a.a.b	ENSGT00390000018004	ENSGT00940000160246.c.a	ENSGT00940000165381
Turbot	MODERN SPECIES	20	ENSSMAG00000013444	ENSSMAG00000013415	ENSSMAG00000013284	exoc1l (ENSSMAG00000037823)	ENSSMAG00000013228	ENSSMAG00000013083	ENSSMAG00000012984	ENSSMAG00000012743	ENSSMAG00000012712	ENSSMAG00000012539	ENSSMAG00000012386	SMIM18 (ENSSMAG00000012371)	GTF2E2 (ENSSMAG00000012351)	DCTN6 (ENSSMAG00000012302)	ENSSMAG00000012281	rbpja (ENSSMAG00000012195) #22	ENSSMAG00000012189 #25	ENSSMAG00000024259	ENSSMAG00000027615	crmp1 (ENSSMAG00000012069)	WFS1 (ENSSMAG00000034750)	ppp2r2ca (ENSSMAG00000012018)	ENSSMAG00000012004	hpf1 (ENSSMAG00000011981)	ENSSMAG00000027862	ENSSMAG00000011868	camk2d2 (ENSSMAG00000011762)	CXCL8 (ENSSMAG00000011742)	ENSSMAG00000011731	FBXO10 (ENSSMAG00000011711)	ENSSMAG00000011672
Tongue sole	MODERN SPECIES	19	fip1l1b (ENSCSEG00000006583)	kitb (ENSCSEG00000006569)	clockb (ENSCSEG00000006544)	exoc1l (ENSCSEG00000006537)	smc2 (ENSCSEG00000006524)	ecpas (ENSCSEG00000006470)	kdm4c (ENSCSEG00000006423)	ENSCSEG00000006286	TYRP1 (ENSCSEG00000006262)	ENSCSEG00000006192	ADGRL3 (ENSCSEG00000006125)	smim18 (ENSCSEG00000006118)	gtf2e2 (ENSCSEG00000006111)	DCTN6 (ENSCSEG00000006103)	ENSCSEG00000006097	rbpja (ENSCSEG00000006030) #22	STIM2 (ENSCSEG00000006014) #25	ENSCSEG00000005997	crmp1 (ENSCSEG00000005981)	WFS1 (ENSCSEG00000005973)	ppp2r2ca (ENSCSEG00000005966)	hpf1 (ENSCSEG00000005962)	ANK2 (ENSCSEG00000005938)	camk2d2 (ENSCSEG00000005184)	ENSCSEG00000005131	FBXO10 (ENSCSEG00000005128)	ENSCSEG00000005125	polr1e (ENSCSEG00000005121)	ZBTB5 (ENSCSEG00000005116)	grhprb (ENSCSEG00000005109)	UBA6 (ENSCSEG00000005081)
Pinecone sodierfish	MODERN SPECIES		kitb (ENSMMDG00005003764)	clockb (ENSMMDG00005004044)	exoc1l (ENSMMDG00005006062)	smc2 (ENSMMDG00005006069)	ecpas (ENSMMDG00005006181)	kdm4c (ENSMMDG00005008177)	ENSMMDG00005008242	TYRP1 (ENSMMDG00005008254)	ENSMMDG00005008262	ADGRL3 (ENSMMDG00005008289)	ENSMMDG00005008314	gtf2e2 (ENSMMDG00005008318)	smim18 (ENSMMDG00005008323)	ENSMMDG00005008328	ENSMMDG00005008335	rbpja (ENSMMDG00005008348) #22	STIM2 (ENSMMDG00005008421) #25	ENSMMDG00005008425	ENSMMDG00005008437	ENSMMDG00005008446	ENSMMDG00005008476	ENSMMDG00005008483	ENSMMDG00005008494	ITLN1 (ENSMMDG00005008500)	crmp1 (ENSMMDG00005008507)	WFS1 (ENSMMDG00005008511)	ppp2r2ca (ENSMMDG00005008515)	ENSMMDG00005008519	hpf1 (ENSMMDG00005008525)	ENSMMDG00005008531	ENSMMDG00005008691
Cod	DUPLICATION
Cod	MODERN SPECIES	16	stx8 (ENSGMOG00000018789)	ENSGMOG00000020061	ENSGMOG00000005339	ENSGMOG00000005282	ENSGMOG00000005228	ENSGMOG00000005206	ENSGMOG00000005190	ENSGMOG00000031432	ENSGMOG00000034123	ENSGMOG00000023389	ENSGMOG00000025924	SMIM18 (ENSGMOG00000005036)	GTF2E2 (ENSGMOG00000005020)	DCTN6 (ENSGMOG00000005001)	ENSGMOG00000004969	rbpja (ENSGMOG00000004951) #22	ENSGMOG00000004792 #25	ENSGMOG00000000689	ENSGMOG00000031805	ENSGMOG00000026775	ENSGMOG00000034682	ENSGMOG00000025853	ENSGMOG00000025268	ENSGMOG00000033539	ENSGMOG00000009655	ENSGMOG00000006707	ENSGMOG00000006725	ENSGMOG00000006737	ENSGMOG00000006752	ENSGMOG00000031371	ENSGMOG00000006820
Cod	MODERN SPECIES	8	ENSGMOG00000029107	ENSGMOG00000029648	oxa1l (ENSGMOG00000013345)	ENSGMOG00000024061	slc7a7 (ENSGMOG00000013482)	ENSGMOG00000034378	ENSGMOG00000013492	ttc5 (ENSGMOG00000013499)	ENSGMOG00000013509	ENSGMOG00000034044	ENSGMOG00000013667	ENSGMOG00000013682	ENSGMOG00000013695	smim20 (ENSGMOG00000024869)	ENSGMOG00000025836	RBPJ (ENSGMOG00000006156) #22	CCKAR (ENSGMOG00000006226) #23	ENSGMOG00000022554	tbc1d19 (ENSGMOG00000006234) #24	STIM2 (ENSGMOG00000017713) #25	ENSGMOG00000024189	ENSGMOG00000030988	ENSGMOG00000031042	ENSGMOG00000013350	ENSGMOG00000025797	ENSGMOG00000018828	ENSGMOG00000036646	ENSGMOG00000034090	ENSGMOG00000023291	ENSGMOG00000010496	ENSGMOG00000023726
Clupeocephala	ANCESTRAL SPECIES	179	ENSGT00940000168370	ENSGT00390000012556 #18	ENSGT00950000182850.a.b.a.a	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00950000183712	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT01100000263482.F	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00940000174987	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.w.a	ENSGT01030000234945	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00980000199058	ENSGT00940000159709
Euteleosteomorpha	ANCESTRAL SPECIES	78	ENSGT00940000168370	ENSGT00390000012556 #18	ENSGT00950000182850.a.b.a.a	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00950000183712	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT01100000263482.F	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00940000174987	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00980000199058	ENSGT00940000159709	ENSGT00940000158370	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000162334	ENSGT00390000000527
Acanthomorphata	ANCESTRAL SPECIES	50	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00440000037582	ENSGT00940000158001	ENSGT00940000177727	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00980000201267	ENSGT00390000005197.a.cb #22	ENSGT00940000177623	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00940000174987	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00970000198440	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00980000199058	ENSGT00940000159709	ENSGT00940000159217	ENSGT00940000159264.f
Euacanthomorphacea	ANCESTRAL SPECIES	17	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00440000037582	ENSGT00940000158001	ENSGT00940000177727	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00980000201267	ENSGT00390000005197.a.cb #22	ENSGT00940000177623	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00940000174987	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00940000159709	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B
Percomorphaceae	ANCESTRAL SPECIES	18	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177727	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00980000201267	ENSGT00390000005197.a.cb #22	ENSGT00940000177623	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00940000174987	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00940000159709	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B
Percomorphaceae_B	ANCESTRAL SPECIES	19	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177727	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00980000201267	ENSGT00390000005197.a.cb #22	ENSGT01100000263563.c.b #23	ENSGT00940000174987	ENSGT00940000177623	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263518.C	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00940000159709	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00990000204615	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B
Percomorphaceae_C	ANCESTRAL SPECIES	20	ENSGT01030000234590.B.a.b	ENSGT00940000175475	ENSGT00940000167107	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177727	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00940000159709	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00990000204615	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B
Eupercaria	ANCESTRAL SPECIES	19	ENSGT01030000234590.B.a.b	ENSGT00940000175475	ENSGT00940000167107	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177727	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00940000159709	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00990000204615	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B
Tetraodontidae	ANCESTRAL SPECIES	29	ENSGT00390000006227	ENSGT00550000075058	ENSGT01030000234590.B.a.b	ENSGT00940000167107	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.cb #22	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00940000159709	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT00940000166316
Tetraodon	MODERN SPECIES	14	slc7a7 (ENSTNIG00000013009)	ENSTNIG00000013008	CCNB1IP1 (ENSTNIG00000013007)	ttc5 (ENSTNIG00000013006)	mettl3 (ENSTNIG00000013005)	tm4sf5 (ENSTNIG00000013004)	zgc:103586 (ENSTNIG00000013003)	fis1 (ENSTNIG00000013002)	cldn15a (ENSTNIG00000013001)	dnajc3b (ENSTNIG00000013000)	naa38 (ENSTNIG00000012999)	CHD3 (ENSTNIG00000012998)	tnfsf12 (ENSTNIG00000012997)	ENSTNIG00000002037	MAN2B2 (ENSTNIG00000012995)	RBPJ (ENSTNIG00000012994) #22	CCKAR (ENSTNIG00000012993) #23	tbc1d19 (ENSTNIG00000012992) #24	STIM2 (ENSTNIG00000012991) #25	PCDH7 (ENSTNIG00000006929)	ENSTNIG00000006229	ENSTNIG00000000703	ENSTNIG00000007196	rell1 (ENSTNIG00000007197)	per1b (ENSTNIG00000007198)	pcolceb (ENSTNIG00000007199)	ENSTNIG00000007200	pcolceb (ENSTNIG00000006851)	ENSTNIG00000006852	ENSTNIG00000006853	cnpy4 (ENSTNIG00000006854)
Eupecaria_A	ANCESTRAL SPECIES	20	ENSGT01030000234590.B.a.b	ENSGT00940000175475	ENSGT00940000167107	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177727	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00940000159709	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00990000204615	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	23		zgc:103586 (ENSLBEG00000028502)	fis1 (ENSLBEG00000028500)	cldn15a (ENSLBEG00000028496)	dnajc3b (ENSLBEG00000028493)	naa38 (ENSLBEG00000028489)	CHD3 (ENSLBEG00000028485)	ENSLBEG00000028482	tnfsf12 (ENSLBEG00000028479)	sat2a.2 (ENSLBEG00000028473)	ENSLBEG00000028472	ENSLBEG00000028470	ENSLBEG00000028467	ENSLBEG00000028465	smim20 (ENSLBEG00000028464)	RBPJ (ENSLBEG00000028460) #22	ENSLBEG00000028457	tbc1d19 (ENSLBEG00000028445) #24	STIM2 (ENSLBEG00000028437) #25	PCDH7 (ENSLBEG00000028428)	ENSLBEG00000028416	DTHD1 (ENSLBEG00000028403)	ENSLBEG00000028402	NWD2 (ENSLBEG00000028396)	ENSLBEG00000028394	ENSLBEG00000028381	rell1 (ENSLBEG00000028367)	pcolceb (ENSLBEG00000028362)	ENSLBEG00000028355	ENSLBEG00000028354	ENSLBEG00000028352
Ballan wrasse	MODERN SPECIES	2421																ENSLBEG00000005448 #22	ENSLBEG00000005406
Eupecaria_B	ANCESTRAL SPECIES	20	ENSGT01030000234590.B.a.b	ENSGT00940000175475	ENSGT00940000167107	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177727	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00940000159709	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00990000204615	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B
Perciformes	ANCESTRAL SPECIES	19	ENSGT01030000234590.B.a.b	ENSGT00940000175475	ENSGT00940000167107	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177727	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00940000159709	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT01030000234567.B.a.b.a.a
Cottioidei	ANCESTRAL SPECIES	20	ENSGT00390000006227	ENSGT00550000075058	ENSGT01030000234590.B.a.b	ENSGT00940000167107	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177727	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00940000159709	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT01030000234567.B.a.b.a.a
Lumpfish	MODERN SPECIES	9	ttc5 (ENSCLMG00005007344)	mettl3 (ENSCLMG00005007346)	tm4sf5 (ENSCLMG00005007348)	zgc:103586 (ENSCLMG00005007369)	fis1 (ENSCLMG00005007370)	cldn15a (ENSCLMG00005007371)	dnajc3b (ENSCLMG00005007373)	naa38 (ENSCLMG00005007381)	CHD3 (ENSCLMG00005007477)	ENSCLMG00005018955	tnfsf12 (ENSCLMG00005018959)	sat2a.2 (ENSCLMG00005018961)	ENSCLMG00005018965	MAN2B2 (ENSCLMG00005018966)	smim20 (ENSCLMG00005018974)	RBPJ (ENSCLMG00005018975) #22	CCKAR (ENSCLMG00005019129) #23	tbc1d19 (ENSCLMG00005019133) #24	STIM2 (ENSCLMG00005019259) #25	PCDH7 (ENSCLMG00005019408)	ENSCLMG00005019409	ENSCLMG00005019410	DTHD1 (ENSCLMG00005019411)	NWD2 (ENSCLMG00005019412)	ENSCLMG00005019413	rell1 (ENSCLMG00005019414)	per1b (ENSCLMG00005019416)	pcolceb (ENSCLMG00005019418)	ENSCLMG00005019427	ENSCLMG00005019428	cnpy4 (ENSCLMG00005019458)
Perciformes_a	ANCESTRAL SPECIES	18	ENSGT00550000075058	ENSGT01030000234590.B.a.b	ENSGT00940000175475	ENSGT00940000167107	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT01060000250085	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00940000159709	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B
Pike perch	MODERN SPECIES	81	ttc5 (ENSSLUG00000018610)	mettl3 (ENSSLUG00000018627)	tm4sf5 (ENSSLUG00000018644)	ENSSLUG00000018650	zgc:103586 (ENSSLUG00000018661)	fis1 (ENSSLUG00000018672)	cldn15a (ENSSLUG00000018675)	dnajc3b (ENSSLUG00000018715)	naa38 (ENSSLUG00000019240)	CHD3 (ENSSLUG00000019415)	tnfsf12 (ENSSLUG00000022559)	sat2a.2 (ENSSLUG00000022569)	ENSSLUG00000022598	MAN2B2 (ENSSLUG00000022634)	smim20 (ENSSLUG00000022672)	RBPJ (ENSSLUG00000022688) #22	CCKAR (ENSSLUG00000022732) #23	tbc1d19 (ENSSLUG00000022768) #24	STIM2 (ENSSLUG00000022815) #25	PCDH7 (ENSSLUG00000022841)	ENSSLUG00000022847	ENSSLUG00000022854	ENSSLUG00000012312	NWD2 (ENSSLUG00000012318)	ENSSLUG00000012324	rell1 (ENSSLUG00000012328)	zpax4 (ENSSLUG00000012335)
Channel bull blenny	MODERN SPECIES	9	ttc5 (ENSCGOG00000011444)	mettl3 (ENSCGOG00000011414)	tm4sf5 (ENSCGOG00000011390)	zgc:103586 (ENSCGOG00000011388)	fis1 (ENSCGOG00000011377)	cldn15a (ENSCGOG00000011375)	dnajc3b (ENSCGOG00000011303)	naa38 (ENSCGOG00000011299)	CHD3 (ENSCGOG00000011146)	tnfsf12 (ENSCGOG00000011139)	sat2a.2 (ENSCGOG00000011135)	ENSCGOG00000011130	ENSCGOG00000011127	MAN2B2 (ENSCGOG00000011043)	smim20 (ENSCGOG00000011039)	RBPJ (ENSCGOG00000010659) #22	CCKAR (ENSCGOG00000010625) #23	tbc1d19 (ENSCGOG00000010296) #24	STIM2 (ENSCGOG00000010239) #25	PCDH7 (ENSCGOG00000010234)	ENSCGOG00000010233	ENSCGOG00000010232	ENSCGOG00000010182	ENSCGOG00000010175	NWD2 (ENSCGOG00000010171)	ENSCGOG00000010170	rell1 (ENSCGOG00000010169)	per1b (ENSCGOG00000009956)	pcolceb (ENSCGOG00000009905)	ENSCGOG00000009900	ENSCGOG00000009835
Eupecaria_C	ANCESTRAL SPECIES	20	ENSGT00550000075058	ENSGT01030000234590.B.a.b	ENSGT00940000175475	ENSGT00940000167107	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00940000159709	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00990000204615	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B
Gilthead seabream	MODERN SPECIES	1	ENSSAUG00010006526	zgc:103586 (ENSSAUG00010006530)	FIS1 (ENSSAUG00010006534)	cldn15a (ENSSAUG00010006535)	dnajc3b (ENSSAUG00010006545)	naa38 (ENSSAUG00010007644)	ENSSAUG00010007676	tnfsf12 (ENSSAUG00010011877)	ENSSAUG00010011880	ENSSAUG00010011887	ENSSAUG00010011889	ENSSAUG00010011893	ENSSAUG00010011894	MAN2B2 (ENSSAUG00010011900)	smim20 (ENSSAUG00010012641)	RBPJ (ENSSAUG00010012659) #22	CCKAR (ENSSAUG00010013172) #23	tbc1d19 (ENSSAUG00010013174) #24	STIM2 (ENSSAUG00010013199) #25	PCDH7 (ENSSAUG00010013542)	ENSSAUG00010013551	DTHD1 (ENSSAUG00010013966)	NWD2 (ENSSAUG00010013971)	ENSSAUG00010013977	rell1 (ENSSAUG00010013981)	per1b (ENSSAUG00010014015)	pcolceb (ENSSAUG00010014136)	ENSSAUG00010014143	ENSSAUG00010014145	ENSSAUG00010014146	cnpy4 (ENSSAUG00010014149)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	19	ENSGT00550000075058	ENSGT01030000234590.B.a.b	ENSGT00940000175475	ENSGT00940000167107	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00940000159709	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00990000204615	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B
Large yellow croaker	MODERN SPECIES	485	tm4sf5 (ENSLCRG00005012356)	ENSLCRG00005012355	zgc:103586 (ENSLCRG00005012351)	fis1 (ENSLCRG00005012349)	cldn15a (ENSLCRG00005012348)	dnajc3b (ENSLCRG00005011240)	naa38 (ENSLCRG00005011231)	CHD3 (ENSLCRG00005001132)	tnfsf12 (ENSLCRG00005021076)	ENSLCRG00005021074	ENSLCRG00005021072	ENSLCRG00005021070	ENSLCRG00005021067	MAN2B2 (ENSLCRG00005021060)	smim20 (ENSLCRG00005021058)	RBPJ (ENSLCRG00005020958) #22	CCKAR (ENSLCRG00005020952) #23	exoc6b (ENSLCRG00005020905)	tkfc (ENSLCRG00005020789)	ENSLCRG00005020779	ENSLCRG00005020777	cmasa (ENSLCRG00005020774)	ovol1a (ENSLCRG00005020772)	mus81 (ENSLCRG00005020771)	ENSLCRG00005020769	ENSLCRG00005020767	ENSLCRG00005020766	ENSLCRG00005020765	MYADM (ENSLCRG00005020764)	ENSLCRG00005020739	vangl2 (ENSLCRG00005020733)
European seabass	MODERN SPECIES	16	ENSDLAG00005006296	ENSDLAG00005006278	ENSDLAG00005006260	ENSDLAG00005006249	ENSDLAG00005034522	fis1 (ENSDLAG00005006210)	ENSDLAG00005006209	dnajc3b (ENSDLAG00005022741)	ENSDLAG00005030688	ENSDLAG00005017867	tnfsf12 (ENSDLAG00005017683)	sat2a.2 (ENSDLAG00005017678)	ENSDLAG00005027977	smim20 (ENSDLAG00005032754)	ENSDLAG00005017600	RBPJ (ENSDLAG00005034416) #22	ENSDLAG00005017064	tbc1d19 (ENSDLAG00005016902) #24	STIM2 (ENSDLAG00005016523) #25	PCDH7 (ENSDLAG00005016495)	ENSDLAG00005015900	DTHD1 (ENSDLAG00005015828)	NWD2 (ENSDLAG00005015809)	ENSDLAG00005015789	RELL1 (ENSDLAG00005031395)	ENSDLAG00005015065	ENSDLAG00005015012	ENSDLAG00005015002	ENSDLAG00005014985	ENSDLAG00005014943	cnpy4 (ENSDLAG00005014925)
Percomorphaceae_D	ANCESTRAL SPECIES	20	ENSGT01030000234590.B.a.b	ENSGT00940000175475	ENSGT00940000167107	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177727	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00940000159709	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00990000204615	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B
Anabantaria	ANCESTRAL SPECIES	19	ENSGT01030000234590.B.a.b	ENSGT00940000175475	ENSGT00940000167107	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177727	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00940000159709	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00990000204615	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B
Zig-zag eel	MODERN SPECIES	9	ENSMAMG00000000430	fis1 (ENSMAMG00000026477)	ENSMAMG00000026017	dnajc3b (ENSMAMG00000000474)	ENSMAMG00000027071	ENSMAMG00000000564	ENSMAMG00000000665	tnfsf12 (ENSMAMG00000000677)	ENSMAMG00000000707	ENSMAMG00000024604	ENSMAMG00000027744	ENSMAMG00000000739	ENSMAMG00000000761	ENSMAMG00000000773	smim20 (ENSMAMG00000000851)	RBPJ (ENSMAMG00000000866) #22	CCKAR (ENSMAMG00000000922) #23	tbc1d19 (ENSMAMG00000000973) #24	STIM2 (ENSMAMG00000001115) #25	PCDH7 (ENSMAMG00000001148)	ENSMAMG00000001177	ENSMAMG00000001221	ENSMAMG00000001243	NWD2 (ENSMAMG00000001275)	ENSMAMG00000025977	RELL1 (ENSMAMG00000001360)	ENSMAMG00000001379	ENSMAMG00000001473	ENSMAMG00000025692	ENSMAMG00000001649	cnpy4 (ENSMAMG00000001907)
Anabantoidei	ANCESTRAL SPECIES	24	ENSGT00390000006227	ENSGT00550000075058	ENSGT01030000234590.B.a.b	ENSGT00940000167107	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00940000159709	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00990000204615	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B
Siamese fighting fish	MODERN SPECIES	10	ENSBSLG00000001817	CCNB1IP1 (ENSBSLG00000001820)	ttc5 (ENSBSLG00000001826)	mettl3 (ENSBSLG00000001830)	tm4sf5 (ENSBSLG00000001841)	zgc:103586 (ENSBSLG00000001846)	cldn15a (ENSBSLG00000001851)	dnajc3b (ENSBSLG00000001862)	naa38 (ENSBSLG00000001869)	ENSBSLG00000002016	tnfsf12 (ENSBSLG00000002135)	sat2a.2 (ENSBSLG00000002151)	ENSBSLG00000002167	MAN2B2 (ENSBSLG00000002325)	smim20 (ENSBSLG00000002760)	RBPJ (ENSBSLG00000002816) #22	CCKAR (ENSBSLG00000003013) #23	tbc1d19 (ENSBSLG00000003019) #24	STIM2 (ENSBSLG00000003795) #25	ENSBSLG00000004030	PCDH7 (ENSBSLG00000004046)	ENSBSLG00000004096	DTHD1 (ENSBSLG00000004288)	NWD2 (ENSBSLG00000004767)	ENSBSLG00000004820	rell1 (ENSBSLG00000004861)	per1b (ENSBSLG00000004934)	pcolceb (ENSBSLG00000005246)	ENSBSLG00000005348	ENSBSLG00000005381	ENSBSLG00000005443
Climbing perch	MODERN SPECIES	9	ttc5 (ENSATEG00000001222)	ENSATEG00000001187	ENSATEG00000001125	ENSATEG00000001120	fis1 (ENSATEG00000027779)	ENSATEG00000001079	dnajc3b (ENSATEG00000001015)	ENSATEG00000029131	ENSATEG00000000848	tnfsf12 (ENSATEG00000000804)	sat2a.2 (ENSATEG00000029588)	ENSATEG00000000737	ENSATEG00000000709	ENSATEG00000000701	smim20 (ENSATEG00000000682)	RBPJ (ENSATEG00000000635) #22	CCKAR (ENSATEG00000000609) #23	STIM2 (ENSATEG00000000502) #25	PCDH7 (ENSATEG00000000477)	ENSATEG00000029285	ENSATEG00000000461	DTHD1 (ENSATEG00000000425)	NWD2 (ENSATEG00000000389)	ENSATEG00000000374	RELL1 (ENSATEG00000000367)	ENSATEG00000000356	ENSATEG00000000342	ENSATEG00000028316	ENSATEG00000000331	ENSATEG00000000312	cnpy4 (ENSATEG00000000305)
Carangaria	ANCESTRAL SPECIES	20	ENSGT01030000234590.B.a.b	ENSGT00940000175475	ENSGT00940000167107	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177727	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00940000159709	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT00940000166316
Carangaria_A	ANCESTRAL SPECIES	26	ENSGT00940000176904	ENSGT01030000234590.B.a.b	ENSGT00940000175475	ENSGT00940000167107	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00940000159709	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT00940000166316
Seriola	ANCESTRAL SPECIES	24	ENSGT00940000176904	ENSGT01030000234590.B.a.b	ENSGT00940000167107	ENSGT00940000175475	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24
Yellowtail amberjack	MODERN SPECIES	3268	ENSSLDG00000003175	fis1 (ENSSLDG00000003136)	cldn15a (ENSSLDG00000003119)	dnajc3b (ENSSLDG00000003048)	naa38 (ENSSLDG00000003013)	ENSSLDG00000002989	ENSSLDG00000002947	ENSSLDG00000002904	ENSSLDG00000002890	tnfsf12 (ENSSLDG00000002823)	sat2a.2 (ENSSLDG00000002808)	ENSSLDG00000002792	ENSSLDG00000002778	MAN2B2 (ENSSLDG00000002758)	smim20 (ENSSLDG00000002742)	RBPJ (ENSSLDG00000002682) #22	CCKAR (ENSSLDG00000002618) #23	tbc1d19 (ENSSLDG00000002490) #24
Greater amberjack	MODERN SPECIES	153	zgc:103586 (ENSSDUG00000006030)	ENSSDUG00000006021	fis1 (ENSSDUG00000006006)	cldn15a (ENSSDUG00000005931)	dnajc3b (ENSSDUG00000005864)	naa38 (ENSSDUG00000005842)	CHD3 (ENSSDUG00000005792)	ENSSDUG00000005772	ENSSDUG00000005749	tnfsf12 (ENSSDUG00000005715)	sat2a.2 (ENSSDUG00000005689)	ENSSDUG00000005674	ENSSDUG00000005656	MAN2B2 (ENSSDUG00000005630)	smim20 (ENSSDUG00000005618)	RBPJ (ENSSDUG00000005567) #22	CCKAR (ENSSDUG00000005548) #23	tbc1d19 (ENSSDUG00000005411) #24
Barramundi perch	MODERN SPECIES	30	mettl3 (ENSLCAG00010006648)	tm4sf5 (ENSLCAG00010006652)	ENSLCAG00010006656	zgc:103586 (ENSLCAG00010006661)	fis1 (ENSLCAG00010006670)	cldn15a (ENSLCAG00010006680)	dnajc3b (ENSLCAG00010006692)	naa38 (ENSLCAG00010006724)	CHD3 (ENSLCAG00010006804)	tnfsf12 (ENSLCAG00010007016)	sat2a.2 (ENSLCAG00010007020)	ENSLCAG00010007022	ENSLCAG00010007025	MAN2B2 (ENSLCAG00010007063)	smim20 (ENSLCAG00010007215)	RBPJ (ENSLCAG00010007241) #22	ENSLCAG00010007305	tbc1d19 (ENSLCAG00010007334) #24	STIM2 (ENSLCAG00010007437) #25
Pleuronectoidei	ANCESTRAL SPECIES	17	ENSGT00940000176904	ENSGT01030000234590.B.a.b	ENSGT00940000167107	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177727	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00940000159709	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT00940000166316
Tongue sole	MODERN SPECIES		mettl3 (ENSCSEG00000004439)	si:dkey-85k7.7 (ENSCSEG00000004446)	tm4sf5 (ENSCSEG00000004451)	fis1 (ENSCSEG00000004455)	zgc:103586 (ENSCSEG00000004460)	cldn15a (ENSCSEG00000004464)	dnajc3b (ENSCSEG00000004470)	naa38 (ENSCSEG00000004480)	CHD3 (ENSCSEG00000004489)	ENSCSEG00000004557	tnfsf12 (ENSCSEG00000004560)	sat2a.2 (ENSCSEG00000004567)	ENSCSEG00000004573	ENSCSEG00000004575	smim20 (ENSCSEG00000004579)	RBPJ (ENSCSEG00000004581) #22	CCKAR (ENSCSEG00000004584) #23	tbc1d19 (ENSCSEG00000004592) #24	STIM2 (ENSCSEG00000004617) #25	AFAP1 (ENSCSEG00000004634)	ABLIM2 (ENSCSEG00000004654)	zcchc4 (ENSCSEG00000004671) #18	ENSCSEG00000004675	ENSCSEG00000004679	pde5ab (ENSCSEG00000004689)	mad2l1 (ENSCSEG00000004726)	ARSJ (ENSCSEG00000004731)	rpl17 (ENSCSEG00000004760)	camk2d1 (ENSCSEG00000004948)	cyp26b1 (ENSCSEG00000004973)	dysf (ENSCSEG00000004989)
Turbot	MODERN SPECIES	11	ENSSMAG00000006289	ENSSMAG00000006327	fis1 (ENSSMAG00000006342)	ENSSMAG00000006363	dnajc3b (ENSSMAG00000006371)	ENSSMAG00000006429	ENSSMAG00000006451	ENSSMAG00000006597	tnfsf12 (ENSSMAG00000006614)	sat2a.2 (ENSSMAG00000022758)	ENSSMAG00000026882	ENSSMAG00000006694	ENSSMAG00000034893	ENSSMAG00000006703	smim20 (ENSSMAG00000006724)	RBPJ (ENSSMAG00000006743) #22	CCKAR (ENSSMAG00000006793) #23	tbc1d19 (ENSSMAG00000006827) #24	STIM2 (ENSSMAG00000006891) #25	PCDH7 (ENSSMAG00000007878)	ENSSMAG00000007911	ENSSMAG00000007944	NWD2 (ENSSMAG00000008034)	ENSSMAG00000008047	RELL1 (ENSSMAG00000008051)	ENSSMAG00000008060	ENSSMAG00000008076	ENSSMAG00000022292	ENSSMAG00000008116	cnpy4 (ENSSMAG00000008141)	ENSSMAG00000008156
Ovalentaria	ANCESTRAL SPECIES	20	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177727	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00980000201267	ENSGT00390000005197.a.cb #22	ENSGT01100000263563.c.b #23	ENSGT00940000174987	ENSGT00940000177623	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263518.C	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00940000159709	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00990000204615	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B
Ovalentaria_B	ANCESTRAL SPECIES	19	ENSGT00940000176904	ENSGT01030000234590.B.a.b	ENSGT00940000175475	ENSGT00940000167107	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00940000174987	ENSGT01100000263518.C	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00940000159709	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00990000204615	ENSGT00940000165960.b
Cichlidae	ANCESTRAL SPECIES	20	ENSGT00550000075058	ENSGT00940000176904	ENSGT01030000234590.B.a.b	ENSGT00940000167107	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00940000174987	ENSGT01100000263518.C	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00940000159709	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00990000204615	ENSGT00940000165960.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	18	ENSGT00550000075058	ENSGT00940000176904	ENSGT01030000234590.B.a.b	ENSGT00940000167107	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00510000050706	ENSGT00950000183121.a.c.b.r	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00940000174987	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00940000159709	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00990000204615	ENSGT00940000165960.b.i.b	ENSGT00930000151033
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	23	ENSGT00550000075058	ENSGT00940000176904	ENSGT01030000234590.B.a.b	ENSGT00940000167107	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00510000050706	ENSGT00950000183121.a.c.b.r.a.a.a	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00940000174987	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00940000159709	ENSGT00940000164656.b.b.a.a.a.a.a.a	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00990000204615	ENSGT00940000165960.b.i.b
Haplochromini	ANCESTRAL SPECIES	31	ENSGT00550000075058	ENSGT00940000176904	ENSGT01030000234590.B.a.b	ENSGT00940000167107	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001.p	ENSGT00510000050706	ENSGT00950000183121.a.c.b.r.a.a.a	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00940000177623	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00940000159709	ENSGT00940000164656.b.b.a.a.a.a.a.a	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000163927.a.a.q.b.a.b.a.b	ENSGT00940000163927.a.a.q.b.a.b.a.a.b.a	ENSGT00940000163927.a.a.q.b.a.b.a.a.a
Burton s mouthbrooder	MODERN SPECIES	343	mettl3 (ENSHBUG00000019774)	si:dkey-85k7.7 (ENSHBUG00000019792)	tm4sf5 (ENSHBUG00000019802)	zgc:103586 (ENSHBUG00000019833)	fis1 (ENSHBUG00000019856)	cldn15a (ENSHBUG00000019870)	dnajc3b (ENSHBUG00000019906)	naa38 (ENSHBUG00000019918)	CHD3 (ENSHBUG00000019956)	tnfsf12 (ENSHBUG00000019999)	ENSHBUG00000020033	ENSHBUG00000020044	ENSHBUG00000020060	ENSHBUG00000020080	MAN2B2 (ENSHBUG00000020161)	RBPJ (ENSHBUG00000020197) #22	CCKAR (ENSHBUG00000020229) #23	tbc1d19 (ENSHBUG00000020340) #24	STIM2 (ENSHBUG00000020356) #25	ENSHBUG00000020374	ENSHBUG00000020684	PCDH7 (ENSHBUG00000020724)	ENSHBUG00000020742	DTHD1 (ENSHBUG00000020754)	NWD2 (ENSHBUG00000020786)	ENSHBUG00000020805	rell1 (ENSHBUG00000020820)	ENSHBUG00000020826	per1b (ENSHBUG00000020875)	pcolceb (ENSHBUG00000020890)	ENSHBUG00000020904
Haplochromini_A	ANCESTRAL SPECIES	35	ENSGT00550000075058	ENSGT00940000176904	ENSGT01030000234590.B.a.b	ENSGT00940000167107	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001.p	ENSGT00510000050706	ENSGT00950000183121.a.c.b.r.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00940000177623	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00940000159709	ENSGT00940000164656.b.b.a.a.a.a.a.a	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00990000204615	ENSGT00940000163927.a.a.q.b.a.b.a.b	ENSGT00940000163927.a.a.q.b.a.b.a.a.b.a
Haplochromini_B	ANCESTRAL SPECIES	25	ENSGT00550000075058	ENSGT00940000176904	ENSGT01030000234590.B.a.b	ENSGT00940000167107	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001.p	ENSGT00510000050706	ENSGT00950000183121.a.c.b.r.a.a.a	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00940000177623	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00940000159709	ENSGT00940000164656.b.b.a.a.a.a.a.a	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00990000204615	ENSGT00940000163927.a.a.q.b.a.b.a.b	ENSGT00940000163927.a.a.q.b.a.b.a.a.b.a
Eastern happy	MODERN SPECIES	15	mettl3 (ENSACLG00000009682)	si:dkey-85k7.7 (ENSACLG00000009679)	tm4sf5 (ENSACLG00000009675)	zgc:103586 (ENSACLG00000009663)	fis1 (ENSACLG00000009654)	cldn15a (ENSACLG00000009567)	dnajc3b (ENSACLG00000009551)	naa38 (ENSACLG00000009549)	CHD3 (ENSACLG00000009222)	tnfsf12 (ENSACLG00000009209)	ENSACLG00000009101	ENSACLG00000009082	ENSACLG00000009058	ENSACLG00000009047	MAN2B2 (ENSACLG00000008986)	RBPJ (ENSACLG00000008949) #22	CCKAR (ENSACLG00000008928) #23	tbc1d19 (ENSACLG00000008818) #24	STIM2 (ENSACLG00000008804) #25	ENSACLG00000008789	ENSACLG00000008786	ENSACLG00000008179	PCDH7 (ENSACLG00000008168)	ENSACLG00000008159	ENSACLG00000007604	ENSACLG00000007302	ENSACLG00000007249	DTHD1 (ENSACLG00000007037)	ENSACLG00000007032	NWD2 (ENSACLG00000007021)	ENSACLG00000007009
Zebra mbuna	MODERN SPECIES	1106	mettl3 (ENSMZEG00005021232)	si:dkey-85k7.7 (ENSMZEG00005021238)	tm4sf5 (ENSMZEG00005021241)	zgc:103586 (ENSMZEG00005021244)	fis1 (ENSMZEG00005021250)	cldn15a (ENSMZEG00005021253)	dnajc3b (ENSMZEG00005021259)	naa38 (ENSMZEG00005021265)	CHD3 (ENSMZEG00005021272)	tnfsf12 (ENSMZEG00005021293)	ENSMZEG00005021296	ENSMZEG00005021298	ENSMZEG00005021301	MAN2B2 (ENSMZEG00005021307)	ENSMZEG00005021313	RBPJ (ENSMZEG00005021315) #22	CCKAR (ENSMZEG00005021319) #23	tbc1d19 (ENSMZEG00005021326) #24	STIM2 (ENSMZEG00005021340) #25	PCDH7 (ENSMZEG00005021344)	ENSMZEG00005021346	ENSMZEG00005021352	DTHD1 (ENSMZEG00005021362)	NWD2 (ENSMZEG00005021371)	ENSMZEG00005021375	rell1 (ENSMZEG00005021377)	ENSMZEG00005021378	per1b (ENSMZEG00005021382)	pcolceb (ENSMZEG00005021388)	ENSMZEG00005021391	ENSMZEG00005021395
P. nyererei	MODERN SPECIES	446	tm4sf5 (ENSPNYG00000021489)	zgc:103586 (ENSPNYG00000021486)	fis1 (ENSPNYG00000021467)	cldn15a (ENSPNYG00000021455)	dnajc3b (ENSPNYG00000021428)	naa38 (ENSPNYG00000021415)	ENSPNYG00000021398	ENSPNYG00000021369	ENSPNYG00000021353	tnfsf12 (ENSPNYG00000021338)	ENSPNYG00000021327	ENSPNYG00000021316	ENSPNYG00000021298	smim20 (ENSPNYG00000021286)	MAN2B2 (ENSPNYG00000021248)	RBPJ (ENSPNYG00000021202) #22	CCKAR (ENSPNYG00000021173) #23	tbc1d19 (ENSPNYG00000021123) #24	STIM2 (ENSPNYG00000021089) #25	PCDH7 (ENSPNYG00000021073)
Lyretail cichlid	MODERN SPECIES	372	mettl3 (ENSNBRG00000023965)	si:dkey-85k7.7 (ENSNBRG00000023967)	tm4sf5 (ENSNBRG00000023969)	zgc:103586 (ENSNBRG00000023973)	fis1 (ENSNBRG00000023977)	cldn15a (ENSNBRG00000000255)	dnajc3b (ENSNBRG00000000306)	naa38 (ENSNBRG00000000619)	CHD3 (ENSNBRG00000000636)	tnfsf12 (ENSNBRG00000000738)	ENSNBRG00000000769	ENSNBRG00000000789	ENSNBRG00000000801	MAN2B2 (ENSNBRG00000000832)	smim20 (ENSNBRG00000000899)	RBPJ (ENSNBRG00000000915) #22	CCKAR (ENSNBRG00000000971) #23	ENSNBRG00000001001	tbc1d19 (ENSNBRG00000001017) #24	STIM2 (ENSNBRG00000001092) #25	ENSNBRG00000001349	ENSNBRG00000001653	PCDH7 (ENSNBRG00000001672)	ENSNBRG00000001686	ENSNBRG00000001756	NWD2 (ENSNBRG00000001779)	ENSNBRG00000001820	rell1 (ENSNBRG00000001832)	ENSNBRG00000001854	per1b (ENSNBRG00000001871)	pcolceb (ENSNBRG00000001936)
Nile tilapia	MODERN SPECIES	15	ttc5 (ENSONIG00000009332)	mettl3 (ENSONIG00000009328)	tm4sf5 (ENSONIG00000042910)	zgc:103586 (ENSONIG00000029695)	fis1 (ENSONIG00000009318)	cldn15a (ENSONIG00000009315)	dnajc3b (ENSONIG00000009308)	naa38 (ENSONIG00000031327)	CHD3 (ENSONIG00000009292)	tnfsf12 (ENSONIG00000009291)	ENSONIG00000029694	ENSONIG00000030544	ENSONIG00000024604	MAN2B2 (ENSONIG00000009282)	smim20 (ENSONIG00000036419)	RBPJ (ENSONIG00000009281) #22	CCKAR (ENSONIG00000009279) #23	tbc1d19 (ENSONIG00000009276) #24	STIM2 (ENSONIG00000009272) #25	ENSONIG00000032813	PCDH7 (ENSONIG00000009270)	ENSONIG00000009262	DTHD1 (ENSONIG00000009259)	NWD2 (ENSONIG00000034757)	ENSONIG00000021452	rell1 (ENSONIG00000009256)	ENSONIG00000031019	per1b (ENSONIG00000009248)	pcolceb (ENSONIG00000009245)	ENSONIG00000035738	ENSONIG00000004847
Midas cichlid	MODERN SPECIES	398	mettl3 (ENSACIG00000019871)	si:dkey-85k7.7 (ENSACIG00000019867)	tm4sf5 (ENSACIG00000019839)	zgc:103586 (ENSACIG00000019809)	fis1 (ENSACIG00000019792)	cldn15a (ENSACIG00000019778)	dnajc3b (ENSACIG00000019743)	naa38 (ENSACIG00000019730)	CHD3 (ENSACIG00000019671)	tnfsf12 (ENSACIG00000019639)	ENSACIG00000019621	ENSACIG00000019613	ENSACIG00000019597	MAN2B2 (ENSACIG00000019514)	smim20 (ENSACIG00000019500)	RBPJ (ENSACIG00000019478) #22	ENSACIG00000019470	tbc1d19 (ENSACIG00000019445) #24	STIM2 (ENSACIG00000019410) #25	ENSACIG00000019375	ENSACIG00000019354
Pomacentridae	ANCESTRAL SPECIES	126	ENSGT00940000176904	ENSGT01030000234590.B.a.b	ENSGT00940000175475	ENSGT00940000167107	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25
Bicolor damselfish	MODERN SPECIES	735	mettl3 (ENSSPAG00000013519)	si:dkey-85k7.7 (ENSSPAG00000013572)	tm4sf5 (ENSSPAG00000013580)	zgc:103586 (ENSSPAG00000013592)	fis1 (ENSSPAG00000013612)	cldn15a (ENSSPAG00000013628)	dnajc3b (ENSSPAG00000013641)	naa38 (ENSSPAG00000013671)	CHD3 (ENSSPAG00000013694)	tnfsf12 (ENSSPAG00000013838)	sat2a.2 (ENSSPAG00000013853)	ENSSPAG00000013891	ENSSPAG00000013900	MAN2B2 (ENSSPAG00000013920)	smim20 (ENSSPAG00000013946)	RBPJ (ENSSPAG00000013963) #22	CCKAR (ENSSPAG00000013995) #23	tbc1d19 (ENSSPAG00000014011) #24	STIM2 (ENSSPAG00000014063) #25
Pomacentridae_A	ANCESTRAL SPECIES	129	ENSGT00940000176904	ENSGT01030000234590.B.a.b	ENSGT00940000175475	ENSGT00940000167107	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25
Spiny chromis	MODERN SPECIES	580	tm4sf5 (ENSAPOG00000005816)	ENSAPOG00000000701	zgc:103586 (ENSAPOG00000005792)	fis1 (ENSAPOG00000000778)	cldn15a (ENSAPOG00000005737)	dnajc3b (ENSAPOG00000005709)	naa38 (ENSAPOG00000005647)	CHD3 (ENSAPOG00000005614)	tnfsf12 (ENSAPOG00000005479)	ENSAPOG00000005462	ENSAPOG00000005443	ENSAPOG00000005412	ENSAPOG00000005390	MAN2B2 (ENSAPOG00000005373)	smim20 (ENSAPOG00000005347)	RBPJ (ENSAPOG00000005326) #22	CCKAR (ENSAPOG00000005277) #23	tbc1d19 (ENSAPOG00000005236) #24	STIM2 (ENSAPOG00000005120) #25
Amphiprion	ANCESTRAL SPECIES	156	ENSGT00940000176904	ENSGT01030000234590.B.a.b	ENSGT00940000175475	ENSGT00940000167107	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25
Clown anemonefish	MODERN SPECIES	1351	ENSAOCG00000020180	tardbpa (ENSAOCG00000020211)	pgd (ENSAOCG00000020234)	kif1b (ENSAOCG00000020388)	ube4b (ENSAOCG00000020486)	rbp7a (ENSAOCG00000020514)	nmnat1 (ENSAOCG00000020534)	lzic (ENSAOCG00000020567)	clstn1 (ENSAOCG00000020668)	tnfsf12 (ENSAOCG00000020696)	sat2a.2 (ENSAOCG00000020748)	ENSAOCG00000020768	ENSAOCG00000020786	smim20 (ENSAOCG00000020801)	MAN2B2 (ENSAOCG00000020941)	RBPJ (ENSAOCG00000020984) #22	CCKAR (ENSAOCG00000021008) #23	tbc1d19 (ENSAOCG00000021112) #24
Orange clownfish	MODERN SPECIES	15	si:dkey-85k7.7 (ENSAPEG00000006695)	mettl3 (ENSAPEG00000006642)	tm4sf5 (ENSAPEG00000006615)	zgc:103586 (ENSAPEG00000006590)	fis1 (ENSAPEG00000006545)	cldn15a (ENSAPEG00000006507)	dnajc3b (ENSAPEG00000006454)	naa38 (ENSAPEG00000006441)	CHD3 (ENSAPEG00000006341)	tnfsf12 (ENSAPEG00000006285)	sat2a.2 (ENSAPEG00000006269)	ENSAPEG00000006252	ENSAPEG00000006215	smim20 (ENSAPEG00000006206)	MAN2B2 (ENSAPEG00000006118)	RBPJ (ENSAPEG00000006063) #22	CCKAR (ENSAPEG00000005946) #23	tbc1d19 (ENSAPEG00000005880) #24	STIM2 (ENSAPEG00000005770) #25	ENSAPEG00000005748	ENSAPEG00000005729	ENSAPEG00000005718	ENSAPEG00000005689	ENSAPEG00000005672	ENSAPEG00000005652	mmp14a (ENSAPEG00000005500)	mrpl52 (ENSAPEG00000005483)	ENSAPEG00000005430	ENSAPEG00000005295	AJUBA (ENSAPEG00000005258)	ENSAPEG00000005134
Atherinomorphae	ANCESTRAL SPECIES	22	ENSGT01030000234590.B.a.b	ENSGT00940000175475	ENSGT00940000167107	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177727	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.bb.b #22	ENSGT00980000201267	ENSGT00390000005197.a.cb #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00940000159709	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b	ENSGT00940000156128.a
Oryzias	ANCESTRAL SPECIES	21	ENSGT00550000075058	ENSGT00940000176904	ENSGT01030000234590.B.a.b	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177834	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00940000159709	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b.g	ENSGT00940000156128.a	ENSGT01030000234567.B.a.b.a.a	ENSGT00940000166316	ENSGT00940000153491.b.b.b
Oryzias_b	ANCESTRAL SPECIES	18	ENSGT00550000075058	ENSGT00940000176904	ENSGT01030000234590.B.a.b	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177834	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00940000159709	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b.g	ENSGT00940000156128.a	ENSGT01030000234567.B.a.b.a.a	ENSGT00940000166316	ENSGT00940000153491.b.b.b
Indian medaka	MODERN SPECIES	19	mettl3 (ENSOMEG00000013883)	si:dkey-85k7.7 (ENSOMEG00000013853)	tm4sf5 (ENSOMEG00000013836)	fis1 (ENSOMEG00000000350)	cldn15a (ENSOMEG00000013766)	dnajc3b (ENSOMEG00000013742)	naa38 (ENSOMEG00000013718)	CHD3 (ENSOMEG00000013691)	ENSOMEG00000013644	tnfsf12 (ENSOMEG00000013629)	sat2a.2 (ENSOMEG00000013593)	ENSOMEG00000013572	ENSOMEG00000013560	MAN2B2 (ENSOMEG00000000344)	smim20 (ENSOMEG00000013502)	RBPJ (ENSOMEG00000013477) #22	CCKAR (ENSOMEG00000013399) #23	tbc1d19 (ENSOMEG00000013354) #24	STIM2 (ENSOMEG00000013261) #25	PCDH7 (ENSOMEG00000013194)	ENSOMEG00000013126	NWD2 (ENSOMEG00000012880)	ENSOMEG00000012805	rell1 (ENSOMEG00000012793)	per1b (ENSOMEG00000012728)	pcolceb (ENSOMEG00000012561)	ENSOMEG00000012530	ENSOMEG00000012512	ENSOMEG00000012500	ENSOMEG00000012453	ENSOMEG00000000821
Javanese ricefish	MODERN SPECIES	9	slc7a7 (ENSOJAG00000005227)	ENSOJAG00000005371	CCNB1IP1 (ENSOJAG00000005384)	ttc5 (ENSOJAG00000005405)	mettl3 (ENSOJAG00000005565)	tm4sf5 (ENSOJAG00000005639)	fis1 (ENSOJAG00000005646)	cldn15a (ENSOJAG00000005664)	dnajc3b (ENSOJAG00000005698)	naa38 (ENSOJAG00000005871)	tnfsf12 (ENSOJAG00000009415)	sat2a.2 (ENSOJAG00000009427)	ENSOJAG00000009444	MAN2B2 (ENSOJAG00000009488)	smim20 (ENSOJAG00000009939)	RBPJ (ENSOJAG00000009983) #22	CCKAR (ENSOJAG00000010271) #23	tbc1d19 (ENSOJAG00000010293) #24	STIM2 (ENSOJAG00000010393) #25	ENSOJAG00000010640	PCDH7 (ENSOJAG00000010737)	ENSOJAG00000010767	ENSOJAG00000010832	ENSOJAG00000011455	ENSOJAG00000011466	NWD2 (ENSOJAG00000011479)	ENSOJAG00000011485	rell1 (ENSOJAG00000011495)	per1b (ENSOJAG00000011505)	pcolceb (ENSOJAG00000011565)	ENSOJAG00000010485
Oryzias_a	ANCESTRAL SPECIES	27	ENSGT00550000075058	ENSGT00940000176904	ENSGT01030000234590.B.a.b	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177834	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00940000159709	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b.g	ENSGT00940000156128.a	ENSGT01030000234567.B.a.b.a.a	ENSGT00940000166316.c	ENSGT00940000153491.b.b.b
Japanese Medaka HdrR	MODERN SPECIES	9	mettl3 (ENSORLG00000007194)	si:dkey-85k7.7 (ENSORLG00000025364)	tm4sf5 (ENSORLG00000007179)	fis1 (ENSORLG00000007174)	cldn15a (ENSORLG00000007164)	dnajc3b (ENSORLG00000007150)	naa38 (ENSORLG00000007119)	CHD3 (ENSORLG00000007107)	ENSORLG00000030390	tnfsf12 (ENSORLG00000022957)	sat2a.2 (ENSORLG00000023069)	ENSORLG00000027376	ENSORLG00000028776	MAN2B2 (ENSORLG00000007017)	smim20 (ENSORLG00000024014)	RBPJ (ENSORLG00000006995) #22	CCKAR (ENSORLG00000006989) #23	tbc1d19 (ENSORLG00000028729) #24	STIM2 (ENSORLG00000023978) #25	ENSORLG00000028007	ENSORLG00000024335	ENSORLG00000025772	ENSORLG00000029033	PCDH7 (ENSORLG00000006964)	ENSORLG00000026395	NWD2 (ENSORLG00000023423)	ENSORLG00000023698	RELL1 (ENSORLG00000006940)	per1b (ENSORLG00000006929)	pcolceb (ENSORLG00000030017)	ENSORLG00000006910
Cyprinodontiformes	ANCESTRAL SPECIES	22	ENSGT01030000234590.B.a.b	ENSGT00940000175475	ENSGT00940000167107	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177727	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.bb.b #22	ENSGT00980000201267	ENSGT00390000005197.a.cb #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00940000159709	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b	ENSGT00940000156128.a
Aplocheiloidei	ANCESTRAL SPECIES	68	ENSGT01030000234590.B.a.b	ENSGT00940000175475	ENSGT00940000167107	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177727	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.bb.b #22	ENSGT00980000201267	ENSGT00390000005197.a.cb #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153648.b	ENSGT00940000159709	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT01030000234567.B.a.b.a.a	ENSGT00940000166316
Turquoise killifish	MODERN SPECIES	1613	CCNB1IP1 (ENSNFUG00015000639)	ttc5 (ENSNFUG00015000653)	mettl3 (ENSNFUG00015000679)	tm4sf5 (ENSNFUG00015000707)	zgc:103586 (ENSNFUG00015000719)	FIS1 (ENSNFUG00015000727)	CHD3 (ENSNFUG00015000749)	ENSNFUG00015000790	tnfsf12 (ENSNFUG00015000794)	ENSNFUG00015000798	ENSNFUG00015000805	MAN2B2 (ENSNFUG00015000817)	smim20 (ENSNFUG00015000856)	ENSNFUG00015000857	ENSNFUG00015000859	RBPJ (ENSNFUG00015000880) #22	CCKAR (ENSNFUG00015000941) #23	TBC1D19 (ENSNFUG00015000949) #24	ENSNFUG00015000962	ENSNFUG00015000964	ENSNFUG00015000968	ENSNFUG00015000969	ENSNFUG00015000971	PCDH7B (ENSNFUG00015000982)	ENSNFUG00015000990	NWD2 (ENSNFUG00015000999)	RELL1 (ENSNFUG00015001013)	per1b (ENSNFUG00015001033)	pcolceb (ENSNFUG00015001053)	OLA.1520 (ENSNFUG00015001067)	ENSNFUG00015001074
Cyprinodontoidei	ANCESTRAL SPECIES	21	ENSGT01030000234590.B.a.b	ENSGT00940000175475	ENSGT00940000167107	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177834	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00940000159709	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT01030000234567.B.a.b.a.a
Poeciliinae	ANCESTRAL SPECIES	21	ENSGT01030000234590.B.a.b	ENSGT00940000175475	ENSGT00940000167107	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177834	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00940000159709	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT00940000166316
Poecilia	ANCESTRAL SPECIES	32	ENSGT00940000176904	ENSGT01030000234590.B.a.b	ENSGT00940000175475	ENSGT00940000167107	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00940000159709	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT00940000166316
NAME_6	ANCESTRAL SPECIES	53	ENSGT00940000176904	ENSGT01030000234590.B.a.b	ENSGT00940000175475	ENSGT00940000167107	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000157221.w.b	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00940000159709	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B
Amazon molly	MODERN SPECIES	293	ttc5 (ENSPFOG00000012975)	mettl3 (ENSPFOG00000012920)	tm4sf5 (ENSPFOG00000012879)	ENSPFOG00000022655	zgc:103586 (ENSPFOG00000012848)	fis1 (ENSPFOG00000012822)	cldn15a (ENSPFOG00000012792)	dnajc3b (ENSPFOG00000012678)	naa38 (ENSPFOG00000012670)	CHD3 (ENSPFOG00000012464)	tnfsf12 (ENSPFOG00000012440)	sat2a.2 (ENSPFOG00000012407)	ENSPFOG00000012401	MAN2B2 (ENSPFOG00000012127)	ENSPFOG00000024816	RBPJ (ENSPFOG00000012004) #22	CCKAR (ENSPFOG00000011947) #23	tbc1d19 (ENSPFOG00000011796) #24	STIM2 (ENSPFOG00000011706) #25	ENSPFOG00000024745	PCDH7 (ENSPFOG00000011689)	ENSPFOG00000011485	ENSPFOG00000011416	NWD2 (ENSPFOG00000011365)	ENSPFOG00000020015	RELL1 (ENSPFOG00000022963)	per1b (ENSPFOG00000011185)	pcolceb (ENSPFOG00000011106)	ENSPFOG00000011090	ENSPFOG00000010952	cnpy4 (ENSPFOG00000010908)
Sailfin molly	MODERN SPECIES	1613																RBPJ (ENSPLAG00000015287) #22	CCKAR (ENSPLAG00000015339) #23	tbc1d19 (ENSPLAG00000015389) #24	STIM2 (ENSPLAG00000015406) #25
Guppy	MODERN SPECIES	448	si:dkey-85k7.7 (ENSPREG00000010679)	tm4sf5 (ENSPREG00000010687)	ENSPREG00000010701	zgc:103586 (ENSPREG00000010715)	fis1 (ENSPREG00000010749)	cldn15a (ENSPREG00000010908)	dnajc3b (ENSPREG00000010979)	naa38 (ENSPREG00000011017)	CHD3 (ENSPREG00000011044)	tnfsf12 (ENSPREG00000011108)	sat2a.2 (ENSPREG00000011128)	ENSPREG00000011146	ENSPREG00000011156	MAN2B2 (ENSPREG00000011170)	smim20 (ENSPREG00000011198)	RBPJ (ENSPREG00000011229) #22	CCKAR (ENSPREG00000011283) #23	tbc1d19 (ENSPREG00000011308) #24	STIM2 (ENSPREG00000011413) #25	PCDH7 (ENSPREG00000011447)	ENSPREG00000011489	ENSPREG00000011525	NWD2 (ENSPREG00000011567)	ENSPREG00000011599	RELL1 (ENSPREG00000011610)	per1b (ENSPREG00000011641)	pcolceb (ENSPREG00000011709)	ENSPREG00000011735	ENSPREG00000011778	cnpy4 (ENSPREG00000011908)	ENSPREG00000011946
Platyfish	MODERN SPECIES	5	zgc:103586 (ENSXMAG00000028038)	fis1 (ENSXMAG00000029734)	cldn15a (ENSXMAG00000010697)	zgc:103586 (ENSXMAG00000021377)	fis1 (ENSXMAG00000010702)	dnajc3b (ENSXMAG00000010671)	naa38 (ENSXMAG00000028369)	CHD3 (ENSXMAG00000016035)	ENSXMAG00000026617	tnfsf12 (ENSXMAG00000026597)	sat2a.2 (ENSXMAG00000029129)	ENSXMAG00000030071	ENSXMAG00000025997	MAN2B2 (ENSXMAG00000016108)	smim20 (ENSXMAG00000026331)	RBPJ (ENSXMAG00000009877) #22	CCKAR (ENSXMAG00000029692) #23	tbc1d19 (ENSXMAG00000009908) #24	STIM2 (ENSXMAG00000000500) #25	PCDH7 (ENSXMAG00000009948)	ENSXMAG00000029363	ENSXMAG00000015280	ENSXMAG00000023755	DTHD1 (ENSXMAG00000015296)	NWD2 (ENSXMAG00000029989)	ENSXMAG00000015305	RELL1 (ENSXMAG00000015308)	ENSXMAG00000026248	ENSXMAG00000030074	per1b (ENSXMAG00000015314)	pcolceb (ENSXMAG00000027902)
NAME_4	ANCESTRAL SPECIES	118	ENSGT00550000075058	ENSGT00940000176904	ENSGT01030000234590.B.a.b	ENSGT00940000167107	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169
Sheepshead minnow	MODERN SPECIES	669	mettl3 (ENSCVAG00000007436)	si:dkey-85k7.7 (ENSCVAG00000007399)	tm4sf5 (ENSCVAG00000007394)	zgc:103586 (ENSCVAG00000007390)	fis1 (ENSCVAG00000007367)	cldn15a (ENSCVAG00000007350)	dnajc3b (ENSCVAG00000007333)	naa38 (ENSCVAG00000007301)	CHD3 (ENSCVAG00000007293)	tnfsf12 (ENSCVAG00000000196)	sat2a.2 (ENSCVAG00000007020)	ENSCVAG00000000192	ENSCVAG00000006997	MAN2B2 (ENSCVAG00000006984)	smim20 (ENSCVAG00000006955)	RBPJ (ENSCVAG00000006950) #22	CCKAR (ENSCVAG00000006922) #23
Mummichog	MODERN SPECIES	2242	tm4sf5 (ENSFHEG00000017145)	zgc:103586 (ENSFHEG00000017104)	fis1 (ENSFHEG00000017098)	cldn15a (ENSFHEG00000017088)	dnajc3b (ENSFHEG00000017081)	naa38 (ENSFHEG00000017032)	ENSFHEG00000017015	ENSFHEG00000017002	ENSFHEG00000016975	tnfsf12 (ENSFHEG00000016957)	sat2a.2 (ENSFHEG00000016933)	ENSFHEG00000016926	ENSFHEG00000016911	MAN2B2 (ENSFHEG00000000427)	smim20 (ENSFHEG00000016834)	RBPJ (ENSFHEG00000016827) #22	CCKAR (ENSFHEG00000016778) #23	tbc1d19 (ENSFHEG00000016753) #24	STIM2 (ENSFHEG00000016700) #25	PCDH7 (ENSFHEG00000016689)	ENSFHEG00000016670	ENSFHEG00000016525
Tiger tail seahorse	MODERN SPECIES	506	ecsit (ENSHCOG00000010406)	EML3 (ENSHCOG00000010392)	mta2 (ENSHCOG00000010372)	cth1 (ENSHCOG00000010276)	taf6l (ENSHCOG00000010268)	fis1 (ENSHCOG00000010246)	cldn15a (ENSHCOG00000010230)	dnajc3b (ENSHCOG00000010223)	naa38 (ENSHCOG00000010193)	CHD3 (ENSHCOG00000010170)	tnfsf12 (ENSHCOG00000010105)	ENSHCOG00000010087	ENSHCOG00000010073	MAN2B2 (ENSHCOG00000010051)	smim20 (ENSHCOG00000010007)	RBPJ (ENSHCOG00000009992) #22	CCKAR (ENSHCOG00000009933) #23	tbc1d19 (ENSHCOG00000000630) #24	zgc:77880 (ENSHCOG00000009864)	stk26 (ENSHCOG00000009843)	ENSHCOG00000009825	MAP3K11 (ENSHCOG00000009802)	drap1 (ENSHCOG00000009796)	zgc:63470 (ENSHCOG00000009790)	rela (ENSHCOG00000009779)	PPP1CB (ENSHCOG00000009767)	SLC29A2 (ENSHCOG00000000638)	ift57 (ENSHCOG00000009743)	SORCS2 (ENSHCOG00000009730)	s1pr5a (ENSHCOG00000009647)	spc24 (ENSHCOG00000009636)
Clupeocephala	ANCESTRAL SPECIES	1078															ENSGT00980000201267	ENSGT00390000005197.a.cb #22
Otomorpha	ANCESTRAL SPECIES	392														ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.cb #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.w.a	ENSGT01030000234945	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00980000199058	ENSGT00940000159709
Otophysi	ANCESTRAL SPECIES	161									ENSGT00940000159423	ENSGT00940000159570.b	ENSGT00530000063812.C	ENSGT00940000164745.i.b	ENSGT00890000139482.a	ENSGT00550000074944	ENSGT00390000002398	ENSGT00390000005197.a.cb #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.w.a	ENSGT01030000234945	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000162334	ENSGT00390000000527	ENSGT00390000017455	ENSGT00940000166804	ENSGT00940000158971
Characiphysae	ANCESTRAL SPECIES	19	ENSGT00940000162428.n	ENSGT00530000063506.B	ENSGT00940000160134	ENSGT00940000155384.b.b	ENSGT00390000002849	ENSGT00390000006227	ENSGT01030000234638.b.a.b	ENSGT00940000159423	ENSGT00940000159570.b	ENSGT00940000156784	ENSGT00530000063812.C	ENSGT00940000164745.i.b	ENSGT00890000139482.a	ENSGT00550000074944	ENSGT00390000002398	ENSGT00390000005197.a.cb #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT01030000234945	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000162334	ENSGT00390000000527	ENSGT00390000017455	ENSGT00940000166804	ENSGT00940000158971	ENSGT00390000015545
Channel catfish	MODERN SPECIES	26	zgc:194655 (ENSIPUG00000002701)	CASP1 (ENSIPUG00000002683)	oxa1l (ENSIPUG00000002671)	slc7a7 (ENSIPUG00000002628)	ccnb1ip1 (ENSIPUG00000002617)	ttc5 (ENSIPUG00000002607)	sall2 (ENSIPUG00000002559)	man2b2 (ENSIPUG00000002536)	acox3 (ENSIPUG00000002518)	htra3 (ENSIPUG00000002495)	ENSIPUG00000002483	sh3tc1 (ENSIPUG00000002458)	tdrd7 (ENSIPUG00000002424)	plaa (ENSIPUG00000002347)	smim20 (ENSIPUG00000002330)	rbpj (ENSIPUG00000002240) #22	CCKAR (ENSIPUG00000002214) #23	tbc1d19 (ENSIPUG00000002172) #24	stim2 (ENSIPUG00000002157) #25	ENSIPUG00000002146	PCDH7 (ENSIPUG00000002132)	ENSIPUG00000002130	ENSIPUG00000002125	arap2 (ENSIPUG00000002086)	DTHD1 (ENSIPUG00000002070)	per1b (ENSIPUG00000002047)	pcolce2 (ENSIPUG00000002037)	PAQR9 (ENSIPUG00000002032)	ENSIPUG00000001994	ENSIPUG00000001978	RWDD4 (ENSIPUG00000001932)
Characiphysae_b	ANCESTRAL SPECIES	18	ENSGT00940000162428.n	ENSGT00530000063506.B	ENSGT00940000160134	ENSGT00940000155384.b.b	ENSGT00390000002849	ENSGT00390000006227	ENSGT01030000234638.b.a.b	ENSGT00940000159423	ENSGT00940000159570.b	ENSGT00940000156784	ENSGT00530000063812.C	ENSGT00940000164745.i.b	ENSGT00890000139482.a	ENSGT00550000074944	ENSGT00390000002398	ENSGT00390000005197.a.cb #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000162334	ENSGT00390000000527	ENSGT00390000017455	ENSGT00940000166804	ENSGT00940000158971	ENSGT00390000015545	ENSGT00940000159709
Characoidei	ANCESTRAL SPECIES	9	ENSGT01040000240385.A.b.b.b.a.a.a.c.b	ENSGT00940000162428.n	ENSGT00530000063506.B	ENSGT00940000160134	ENSGT00940000155384.b.b	ENSGT00390000002849	ENSGT00390000006227	ENSGT01030000234638.b.a.b	ENSGT00940000159423	ENSGT00940000159570.b	ENSGT00530000063812.C	ENSGT00940000164745.i.b	ENSGT00890000139482.a	ENSGT00550000074944	ENSGT00390000002398	ENSGT00390000005197.a.cb #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000162334	ENSGT00390000000527	ENSGT00390000017455	ENSGT00940000166804	ENSGT00940000158971	ENSGT00390000015545	ENSGT00940000159709
Red-bellied piranha	MODERN SPECIES	63	ENSPNAG00000012016	casp23 (ENSPNAG00000002053)	oxa1l (ENSPNAG00000011975)	slc7a7 (ENSPNAG00000011946)	ENSPNAG00000006123	CCNB1IP1 (ENSPNAG00000001975)	ttc5 (ENSPNAG00000001978)	MAN2B2 (ENSPNAG00000011850)	acox3 (ENSPNAG00000001940)	HTRA3 (ENSPNAG00000011756)	ENSPNAG00000001888	GTSF1 (ENSPNAG00000005737)	tdrd7b (ENSPNAG00000011669)	plaa (ENSPNAG00000011648)	smim20 (ENSPNAG00000001820)	rbpjb (ENSPNAG00000011594) #22	CCKAR (ENSPNAG00000011557) #23	tbc1d19 (ENSPNAG00000011545) #24	STIM2 (ENSPNAG00000001745) #25	PCDH7 (ENSPNAG00000011447)	ENSPNAG00000001733	ENSPNAG00000011424	ENSPNAG00000006992	DTHD1 (ENSPNAG00000004807)	per1b (ENSPNAG00000011346)	pcolceb (ENSPNAG00000011299)	PAQR9 (ENSPNAG00000011292)	ENSPNAG00000011286	ENSPNAG00000011270	ENSPNAG00000001631	ENSPNAG00000011218
Mexicana tetra	MODERN SPECIES	7	ENSAMXG00000031152	casp23 (ENSAMXG00000010996)	oxa1l (ENSAMXG00000010987)	slc7a7 (ENSAMXG00000010984)	ENSAMXG00000010979	ttc5 (ENSAMXG00000010966)	MAN2B2 (ENSAMXG00000010962)	ENSAMXG00000010953	acox3 (ENSAMXG00000010946)	HTRA3 (ENSAMXG00000010937)	ENSAMXG00000010934	ENSAMXG00000036095	tdrd7b (ENSAMXG00000010917)	plaa (ENSAMXG00000010868)	smim20 (ENSAMXG00000031387)	rbpjb (ENSAMXG00000010835) #22	CCKAR (ENSAMXG00000041422) #23	tbc1d19 (ENSAMXG00000038746) #24	STIM2 (ENSAMXG00000010775) #25	ENSAMXG00000036373	ENSAMXG00000037910	ENSAMXG00000035407	PCDH7 (ENSAMXG00000018969)	ENSAMXG00000018865	DTHD1 (ENSAMXG00000018777)	per1b (ENSAMXG00000018625)	pcolceb (ENSAMXG00000018478)	PAQR9 (ENSAMXG00000018419)	ENSAMXG00000018304	ENSAMXG00000032118	ENSAMXG00000035055
Electric eel	MODERN SPECIES	72	zgc:194655 (ENSEEEG00000020084)	casp23 (ENSEEEG00000020083)	oxa1l (ENSEEEG00000020019)	slc7a7 (ENSEEEG00000019892)	ENSEEEG00000019884	CCNB1IP1 (ENSEEEG00000019883)	ttc5 (ENSEEEG00000019880)	MAN2B2 (ENSEEEG00000019876)	acox3 (ENSEEEG00000019745)	HTRA3 (ENSEEEG00000019699)	GTSF1 (ENSEEEG00000019693)	ENSEEEG00000019688	tdrd7b (ENSEEEG00000019667)	plaa (ENSEEEG00000019650)	smim20 (ENSEEEG00000019643)	rbpjb (ENSEEEG00000019597) #22	CCKAR (ENSEEEG00000019594) #23	tbc1d19 (ENSEEEG00000019589) #24	STIM2 (ENSEEEG00000019390) #25	PCDH7 (ENSEEEG00000019378)	ENSEEEG00000019374	ENSEEEG00000019372	per1b (ENSEEEG00000019365)	pcolceb (ENSEEEG00000019357)	PAQR9 (ENSEEEG00000019356)	ENSEEEG00000019354	ENSEEEG00000019353	ENSEEEG00000019352	ADAM33 (ENSEEEG00000019346)	rwdd (ENSEEEG00000019343)	rell1 (ENSEEEG00000019342)
Cyprinoidei	ANCESTRAL SPECIES	3	ENSGT00940000165651.b	ENSGT00900000141164.q.b	ENSGT00940000153648.b	ENSGT00980000199058	ENSGT00940000159709	ENSGT00390000015545	ENSGT00940000158971	ENSGT00940000166804	ENSGT00940000159423	ENSGT00940000159570.b	ENSGT00530000063812.C	ENSGT00940000164745.i.b	ENSGT00890000139482.a	ENSGT00550000074944	ENSGT00390000002398	ENSGT00390000005197.a.cb #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.w.a	ENSGT00940000157221.w.b	ENSGT00940000167169	ENSGT00940000159264.f	ENSGT00940000162334	ENSGT00940000158388.b	ENSGT00940000157094	ENSGT00940000164076.a.a	ENSGT00940000153991.a.a	ENSGT00940000162034	ENSGT00940000160883.b	ENSGT00940000165991
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	335			ENSGT00940000165651.b.c	ENSGT00900000141164.q.b.b	ENSGT00940000153648.b.k	ENSGT00980000199058.a	ENSGT00940000159709.b	ENSGT00390000015545.b	ENSGT00940000158971.bb.a	ENSGT00940000166804.b	ENSGT00940000159570.b.e	ENSGT00530000063812.C.a	ENSGT00890000139482.a.b	ENSGT00550000074944.h	ENSGT00390000002398.o.b	ENSGT00390000005197.a.cb.a #22	ENSGT01100000263563.c.b.b #23	ENSGT00390000015965.b #24	ENSGT00390000000214.a.b.k.c #25	ENSGT00940000157221.w.a	ENSGT00940000159217.c.a	ENSGT00940000159264.f.e	ENSGT00940000162334.a	ENSGT00940000157094.y.a	ENSGT00940000164076.a.a.a	ENSGT00940000157678.d	ENSGT00940000162034.b	ENSGT00940000160883.b.b	ENSGT00940000165991.q	ENSGT00940000164592.c	ENSGT00940000153284.a.mc.a.b
Goldfish	MODERN SPECIES	25	ca7 (ENSCARG00000005850)	ENSCARG00000005865	rrad (ENSCARG00000005879)	CIAO2B (ENSCARG00000005891)	vstm2b (ENSCARG00000005938)	NWD2 (ENSCARG00000005972)	zgc:194930 (ENSCARG00000005988)	rell1 (ENSCARG00000005991)	ENSCARG00000006027	rwdd (ENSCARG00000006205)	ENSCARG00000006281	HTRA3 (ENSCARG00000006395)	ENSCARG00000006416	plaa (ENSCARG00000006465)	smim20 (ENSCARG00000006708)	rbpjb (ENSCARG00000006750) #22	CCKAR (ENSCARG00000007033) #23	STIM2 (ENSCARG00000007210) #25	ENSCARG00000007892	PCDH7 (ENSCARG00000007897)	ENSCARG00000007906	ENSCARG00000007912	ENSCARG00000007914	kcnk5a (ENSCARG00000007921)	ENSCARG00000007929	gnmt (ENSCARG00000007936)	ENSCARG00000007943	cct7 (ENSCARG00000007967)	ENSCARG00000008566	ENSCARG00000008571	ENSCARG00000008582
Cyprininae_a	ANCESTRAL SPECIES	55		ENSGT00940000165651.b.c	ENSGT00900000141164.q.b.b	ENSGT00940000153648.b.k	ENSGT00980000199058.a	ENSGT00940000159709.b	ENSGT00390000015545.b	ENSGT00940000158971.bb.a	ENSGT00940000166804.b	ENSGT00940000159423.d	ENSGT00940000159570.b.e	ENSGT00530000063812.C.a	ENSGT00890000139482.a.b	ENSGT00550000074944.h	ENSGT00390000002398.o.b	ENSGT00390000005197.a.cb.a #22	ENSGT01100000263563.c.b.b #23	ENSGT00390000015965.b #24	ENSGT00390000000214.a.b.k.c #25	ENSGT00940000157221.w.a	ENSGT00940000159217.c.a	ENSGT00940000159264.f.e	ENSGT00940000162334.a	ENSGT00940000157094.y.a	ENSGT00940000164076.a.a.a	ENSGT00940000162034.b	ENSGT00940000160883.b.b	ENSGT00940000165991.q	ENSGT00940000164592.c	ENSGT00940000153284.a.mc.a.b	ENSGT00940000153904.b.b
Common carp reference	MODERN SPECIES	6	ENSCCRG00000033281	ENSCCRG00000080783	zgc:194930 (ENSCCRG00000074853)	rell1 (ENSCCRG00000060138)	rwdd (ENSCCRG00000013450)	ENSCCRG00000023192	ENSCCRG00000057090	acox3 (ENSCCRG00000077056)	ENSCCRG00000080751	ENSCCRG00000065060	ENSCCRG00000058589	ENSCCRG00000067770	tdrd7b (ENSCCRG00000049209)	plaa (ENSCCRG00000038774)	smim20 (ENSCCRG00000021030)	rbpjb (ENSCCRG00000034784) #22	CCKAR (ENSCCRG00000002393) #23	tbc1d19 (ENSCCRG00000069511) #24	STIM2 (ENSCCRG00000034564) #25	PCDH7 (ENSCCRG00000068069)	ENSCCRG00000059886	ENSCCRG00000061451	ENSCCRG00000076759	ENSCCRG00000074811	ENSCCRG00000081820	per1b (ENSCCRG00000007240)	pcolceb (ENSCCRG00000007231)	ankrd46b (ENSCCRG00000019651)	ENSCCRG00000022165	ENSCCRG00000057269	ENSCCRG00000024939
Golden-line barbel	MODERN SPECIES	378											HTRA3 (ENSSGRG00000033872)	ENSSGRG00000033873	ENSSGRG00000033874	tdrd7b (ENSSGRG00000033883)	plaa (ENSSGRG00000034252)	rbpjb (ENSSGRG00000034700) #22	CCKAR (ENSSGRG00000035387) #23	tbc1d19 (ENSSGRG00000035395) #24	STIM2 (ENSSGRG00000035647) #25	ENSSGRG00000035648	ENSSGRG00000035651	fgf12a (ENSSGRG00000035654)	sst2 (ENSSGRG00000035665)
Cyprininae	ANCESTRAL SPECIES	451	ENSGT00940000165651.b.d	ENSGT00900000141164.q.b.a	ENSGT00940000153648.b.l	ENSGT00980000199058.b	ENSGT00940000159709.a	ENSGT00390000015545.a	ENSGT00940000158971.bb.b	ENSGT00940000166804.a	ENSGT00940000159423	ENSGT00940000159570.b.f	ENSGT00940000164745.i.b	ENSGT00530000063812.C.b	ENSGT00890000139482.a.a	ENSGT00550000074944.g	ENSGT00390000002398.o.a	ENSGT00390000005197.a.cb.b #22	ENSGT01100000263563.c.b.a #23	ENSGT00390000015965.a #24	ENSGT00390000000214.a.b.k.d #25
Cyprininae_a	ANCESTRAL SPECIES	128	ENSGT00940000165651.b.d	ENSGT00900000141164.q.b.a	ENSGT00940000153648.b.l	ENSGT00980000199058.b	ENSGT00940000159709.a	ENSGT00390000015545.a	ENSGT00940000158971.bb.b	ENSGT00940000166804.a	ENSGT00940000159423.c	ENSGT00940000159570.b.f	ENSGT00530000063812.C.b	ENSGT00940000164745.i.b	ENSGT00890000139482.a.a	ENSGT00550000074944.g	ENSGT00390000002398.o.a	ENSGT00390000005197.a.cb.b #22	ENSGT01100000263563.c.b.a #23	ENSGT00390000015965.a #24	ENSGT00390000000214.a.b.k.d #25	ENSGT00940000157221.w.b	ENSGT00940000167169.e	ENSGT00940000159217.c.b	ENSGT00940000159264.f.f	ENSGT00940000162334.b	ENSGT00940000157094.y.b	ENSGT00940000164076.a.a.b	ENSGT00940000153991.a.a.ab	ENSGT00940000162034.a	ENSGT00940000160883.b.a	ENSGT00940000165991.r	ENSGT00940000164592.d
Common carp reference	MODERN SPECIES		ENSCCRG00000011945	ENSCCRG00000077528	ENSCCRG00000043785	zgc:194930 (ENSCCRG00000043795)	rell1 (ENSCCRG00000013452)	rwdd (ENSCCRG00000060629)	ENSCCRG00000041162	ENSCCRG00000050128	acox3 (ENSCCRG00000074050)	ENSCCRG00000069242	ENSCCRG00000060694	ENSCCRG00000035054	tdrd7b (ENSCCRG00000035428)	plaa (ENSCCRG00000021039)	smim20 (ENSCCRG00000043202)	rbpjb (ENSCCRG00000072958) #22	CCKAR (ENSCCRG00000034676) #23	tbc1d19 (ENSCCRG00000016172) #24	STIM2 (ENSCCRG00000067311) #25	ENSCCRG00000058270	ENSCCRG00000081695	PCDH7 (ENSCCRG00000078409)	ENSCCRG00000025510	per1b (ENSCCRG00000025395)	pcolceb (ENSCCRG00000025382)	ankrd46b (ENSCCRG00000025376)	ENSCCRG00000061144	ENSCCRG00000054488	ENSCCRG00000073908	ENSCCRG00000024928	gc2 (ENSCCRG00000042447)
Golden-line barbel	MODERN SPECIES	239	mta2 (ENSSGRG00000041824)	EML3 (ENSSGRG00000038244)	ecsit (ENSSGRG00000038194)	ENSSGRG00000038191	rtn3 (ENSSGRG00000038187)	men1 (ENSSGRG00000038186)	map4k2 (ENSSGRG00000037985)	ENSSGRG00000037971	ENSSGRG00000037959	acox3 (ENSSGRG00000037923)	ENSSGRG00000037922	ENSSGRG00000037921	tdrd7b (ENSSGRG00000037920)	plaa (ENSSGRG00000037756)	smim20 (ENSSGRG00000037754)	rbpjb (ENSSGRG00000037494) #22	CCKAR (ENSSGRG00000037476) #23	tbc1d19 (ENSSGRG00000037388) #24	STIM2 (ENSSGRG00000037192) #25
Goldfish	MODERN SPECIES	47	ENSCARG00000055066	ENSCARG00000055054	NWD2 (ENSCARG00000055026)	zgc:194930 (ENSCARG00000055020)	rell1 (ENSCARG00000055003)	rwdd (ENSCARG00000054969)	ENSCARG00000054880	ENSCARG00000054861	acox3 (ENSCARG00000054523)	HTRA3 (ENSCARG00000054482)	ENSCARG00000054469	ENSCARG00000054433	tdrd7b (ENSCARG00000052803)	plaa (ENSCARG00000052216)	smim20 (ENSCARG00000052191)	rbpjb (ENSCARG00000051741) #22	CCKAR (ENSCARG00000051700) #23	tbc1d19 (ENSCARG00000051474) #24	STIM2 (ENSCARG00000050186) #25	ENSCARG00000050142	ENSCARG00000050121	ENSCARG00000050117	ENSCARG00000050101	ENSCARG00000050046	ENSCARG00000050025	ENSCARG00000050010	ENSCARG00000049982	ENSCARG00000049974	ENSCARG00000049963	znf219 (ENSCARG00000049945)	ENSCARG00000049897
Zebrafish	MODERN SPECIES	22	pcxb (ENSDARG00000051939)	ENSDARG00000078078	NWD2 (ENSDARG00000077162)	zgc:194930 (ENSDARG00000079584)	rell1 (ENSDARG00000018312)	rwdd (ENSDARG00000068256)	ENSDARG00000059693	ENSDARG00000068258	acox3 (ENSDARG00000038865)	HTRA3 (ENSDARG00000010925)	ENSDARG00000077330	ENSDARG00000099586	tdrd7b (ENSDARG00000077523)	plaa (ENSDARG00000042728)	smim20 (ENSDARG00000112670)	rbpjb (ENSDARG00000052091) #22	CCKAR (ENSDARG00000052089) #23	tbc1d19 (ENSDARG00000013842) #24	STIM2 (ENSDARG00000001776) #25	PCDH7 (ENSDARG00000060610)	ENSDARG00000094805	ENSDARG00000101994	ENSDARG00000100518	zdhhc21 (ENSDARG00000110709)	ENSDARG00000074782	sinhcafl (ENSDARG00000078118)	DENND5A (ENSDARG00000017006)	tmem41b (ENSDARG00000080006)	ipo7 (ENSDARG00000035751)	ENSDARG00000105344	bco1l (ENSDARG00000103659)
Euteleosteomorpha	ANCESTRAL SPECIES	833															ENSGT00980000201267	ENSGT00390000005197.a.cb #22
Acanthomorphata	ANCESTRAL SPECIES	50	ENSGT00940000167107	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00440000037582	ENSGT00940000158001	ENSGT00940000177727	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00980000201267	ENSGT00390000005197.a.cb #22	ENSGT00940000177623	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00940000174987	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00970000198440	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00980000199058	ENSGT00940000159709	ENSGT00940000159217
Euacanthomorphacea	ANCESTRAL SPECIES	17	ENSGT00940000167107	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00440000037582	ENSGT00940000158001	ENSGT00940000177727	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00980000201267	ENSGT00390000005197.a.cb #22	ENSGT00940000177623	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00940000174987	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00940000159709	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b
Pinecone sodierfish	MODERN SPECIES	9	ENSMMDG00005012563	tm4sf5 (ENSMMDG00005012564)	zgc:103586 (ENSMMDG00005012626)	fis1 (ENSMMDG00005012639)	cldn15a (ENSMMDG00005012642)	dnajc3b (ENSMMDG00005012648)	naa38 (ENSMMDG00005012831)	cyb5d1 (ENSMMDG00005012834)	CHD3 (ENSMMDG00005012922)	tnfsf12 (ENSMMDG00005015565)	sat2a.2 (ENSMMDG00005015566)	ENSMMDG00005015569	ENSMMDG00005015571	MAN2B2 (ENSMMDG00005015578)	smim20 (ENSMMDG00005015589)	rbpjb (ENSMMDG00005015594) #22	CCKAR (ENSMMDG00005015984) #23	tbc1d19 (ENSMMDG00005015988) #24	STIM2 (ENSMMDG00005015995) #25	PCDH7 (ENSMMDG00005016272)	ENSMMDG00005016277	DTHD1 (ENSMMDG00005016470)	NWD2 (ENSMMDG00005016473)	ENSMMDG00005016476	rell1 (ENSMMDG00005016478)	per1b (ENSMMDG00005016500)	pcolceb (ENSMMDG00005016990)	ENSMMDG00005017038	ENSMMDG00005017042	cnpy4 (ENSMMDG00005017126)	ENSMMDG00005017128
Percomorphaceae	ANCESTRAL SPECIES	18	ENSGT01030000234590.B.a.b	ENSGT00940000167107	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177727	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00980000201267	ENSGT00390000005197.a.cb #22	ENSGT00940000177623	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00940000174987	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00940000159709	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b
Percomorphaceae_B	ANCESTRAL SPECIES	19	ENSGT00940000175475	ENSGT00940000167107	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177727	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00980000201267	ENSGT00390000005197.a.cb #22	ENSGT01100000263563.c.b #23	ENSGT00940000174987	ENSGT00940000177623	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263518.C	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00940000159709	ENSGT00940000159217	ENSGT00940000159264.f
Percomorphaceae_C	ANCESTRAL SPECIES																	ENSGT00390000005197.a.cb #22
Eupercaria	ANCESTRAL SPECIES																	ENSGT00390000005197.a.cb #22
Tetraodontidae	ANCESTRAL SPECIES	29	ENSGT00390000002849	ENSGT00390000006227	ENSGT00550000075058	ENSGT01030000234590.B.a.b	ENSGT00940000167107	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.cb #22	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00940000159709	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B
Fugu	MODERN SPECIES	20	CCNB1IP1 (ENSTRUG00000022746)	ttc5 (ENSTRUG00000015399)	mettl3 (ENSTRUG00000015365)	tm4sf5 (ENSTRUG00000015352)	zgc:103586 (ENSTRUG00000015344)	fis1 (ENSTRUG00000028230)	cldn15a (ENSTRUG00000015308)	dnajc3b (ENSTRUG00000015269)	naa38 (ENSTRUG00000026123)	CHD3 (ENSTRUG00000014990)	tnfsf12 (ENSTRUG00000014986)	sat2a.2 (ENSTRUG00000014957)	ENSTRUG00000019816	MAN2B2 (ENSTRUG00000025905)	smim20 (ENSTRUG00000025116)	rbpjb (ENSTRUG00000014707) #22	CCKAR (ENSTRUG00000014776) #23	STIM2 (ENSTRUG00000014691) #25	PCDH7 (ENSTRUG00000014668)	ENSTRUG00000014635	ENSTRUG00000014629	NWD2 (ENSTRUG00000014613)	ENSTRUG00000021077	rell1 (ENSTRUG00000022108)	per1b (ENSTRUG00000014420)	pcolceb (ENSTRUG00000014354)	ENSTRUG00000028673	ENSTRUG00000014351	cnpy4 (ENSTRUG00000014142)	ENSTRUG00000014066	ENSTRUG00000027326
Ovalentaria	ANCESTRAL SPECIES	20	ENSGT00940000175475	ENSGT00940000167107	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177727	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00980000201267	ENSGT00390000005197.a.cb #22	ENSGT01100000263563.c.b #23	ENSGT00940000174987	ENSGT00940000177623	ENSGT00390000005197.a.bb.b #22	ENSGT01100000263518.C	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00940000159709	ENSGT00940000159217	ENSGT00940000159264.f
Atherinomorphae	ANCESTRAL SPECIES	22	ENSGT00940000167107	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177727	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.bb.b #22	ENSGT00980000201267	ENSGT00390000005197.a.cb #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00940000159709	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT01030000234567.B.a.b.a.a
Cyprinodontiformes	ANCESTRAL SPECIES	22	ENSGT00940000167107	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177727	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.bb.b #22	ENSGT00980000201267	ENSGT00390000005197.a.cb #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT01010000222552	ENSGT00940000159709	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT01030000234567.B.a.b.a.a
Aplocheiloidei	ANCESTRAL SPECIES	68	ENSGT00940000167107	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177727	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.bb.b #22	ENSGT00980000201267	ENSGT00390000005197.a.cb #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153648.b	ENSGT00940000159709	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT01030000234567.B.a.b.a.a	ENSGT00940000166316	ENSGT00940000153491.b.b.b	ENSGT00940000163927.a.a
Mangrove rivulus	MODERN SPECIES	295	tm4sf5 (ENSKMAG00000019557)	ENSKMAG00000019553	zgc:103586 (ENSKMAG00000019540)	fis1 (ENSKMAG00000019524)	cldn15a (ENSKMAG00000019515)	dnajc3b (ENSKMAG00000019474)	naa38 (ENSKMAG00000019461)	CHD3 (ENSKMAG00000019292)	tnfsf12 (ENSKMAG00000019230)	sat2a.2 (ENSKMAG00000019214)	ENSKMAG00000019194	ENSKMAG00000019182	smim20 (ENSKMAG00000019171)	MAN2B2 (ENSKMAG00000019095)	ENSKMAG00000019073	RBPJ (ENSKMAG00000019039) #22	CCKAR (ENSKMAG00000019006) #23	tbc1d19 (ENSKMAG00000018944) #24
Oryzias	ANCESTRAL SPECIES																	ENSGT00390000005197.a.cb #22
Oryzias_a	ANCESTRAL SPECIES																	ENSGT00390000005197.a.cb #22
Chinese medaka	DUPLICATION
Chinese medaka	MODERN SPECIES	2490																ENSOSIG00000012977 #22
Chinese medaka	MODERN SPECIES	941	CCNB1IP1 (ENSOSIG00000014346)	ENSOSIG00000014348	ttc5 (ENSOSIG00000014349)	mettl3 (ENSOSIG00000014351)	ENSOSIG00000014402	fis1 (ENSOSIG00000014404)	cldn15a (ENSOSIG00000014405)	dnajc3b (ENSOSIG00000014409)	naa38 (ENSOSIG00000015879)	CHD3 (ENSOSIG00000015892)	tnfsf12 (ENSOSIG00000016550)	sat2a.2 (ENSOSIG00000016552)	ENSOSIG00000016561	ENSOSIG00000016562	MAN2B2 (ENSOSIG00000016566)	ENSOSIG00000016632 #22	CCKAR (ENSOSIG00000016633) #23	tbc1d19 (ENSOSIG00000016637) #24	STIM2 (ENSOSIG00000016653) #25	ENSOSIG00000017002
Protacanthopterygii	ANCESTRAL SPECIES	57	ENSGT00950000182850.a.b.a.a.b	ENSGT00390000012556 #18	ENSGT00950000182850.a.b.a.a.a	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT01100000263482.F	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT00940000177059	ENSGT01030000234638.b.a.b	ENSGT00390000002398	ENSGT00390000005197.a.cb #22	ENSGT01100000263563.c.b #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k #25	ENSGT00940000157221.x	ENSGT00940000167169	ENSGT00940000153404.b	ENSGT00940000153648.b	ENSGT00990000208579	ENSGT00940000159709	ENSGT00940000159264.f	ENSGT00940000162334	ENSGT00390000000527	ENSGT00390000017455	ENSGT00940000166804	ENSGT00970000193685
Northern pike	MODERN SPECIES	23	zcchc4 (ENSELUG00000011763) #18	ABLIM2 (ENSELUG00000011712)	AFAP1 (ENSELUG00000011506)	ENSELUG00000028395	hsd11b1la (ENSELUG00000011379)	SORCS2 (ENSELUG00000011332)	grpel1 (ENSELUG00000011256)	tada2b (ENSELUG00000011240)	ccdc96 (ENSELUG00000031533)	TBC1D14 (ENSELUG00000011194)	kiaa0232 (ENSELUG00000011174)	s100p (ENSELUG00000011155)	ENSELUG00000011060	MAN2B2 (ENSELUG00000011118)	smim20 (ENSELUG00000031844)	rbpjb (ENSELUG00000011029) #22	CCKAR (ENSELUG00000001082) #23	tbc1d19 (ENSELUG00000010951) #24	STIM2 (ENSELUG00000010866) #25	ENSELUG00000034124	ENSELUG00000010753	PCDH7 (ENSELUG00000010732)	ENSELUG00000024789	ENSELUG00000000384	DTHD1 (ENSELUG00000010593)	NWD2 (ENSELUG00000010572)	ENSELUG00000032348	rell1 (ENSELUG00000010541)	per1b (ENSELUG00000000378)	pcolceb (ENSELUG00000010467)	PAQR9 (ENSELUG00000010428)
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	336	ENSGT01100000263495.E.m.b.b	ENSGT00940000155279.C.a.a.m.a.a.a	ENSGT00940000155150.a.b	ENSGT00940000159954.a	ENSGT00940000153395.a.i	ENSGT00940000155475.h.i	ENSGT00390000012556.c #18	ENSGT00950000182850.a.b.a.a.a.a	ENSGT00950000183067.a.a.g	ENSGT01030000234563.b.a.a.k	ENSGT00390000005589.a.a.x	ENSGT00940000157318.b	ENSGT01100000263482.F	ENSGT00940000157250.e	ENSGT00390000018549.k	ENSGT00390000005197.a.cb.e.a #22	ENSGT01100000263563.c.b.c #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k.a #25	ENSGT00940000157221.x.i.b
Salmoninae_a	ANCESTRAL SPECIES	20	ENSGT00940000155150.a.b	ENSGT00940000155279.C.a.a.m.a.b	ENSGT00940000159769.a.a.w.b	ENSGT00940000159954.a	ENSGT00940000153395.a.i	ENSGT00940000155475.h.i	ENSGT00390000012556.c #18	ENSGT00950000182850.a.b.a.a.a.a	ENSGT00950000183067.a.a.g	ENSGT01030000234563.b.a.a.k	ENSGT00390000005589.a.a.x	ENSGT00940000157318.b	ENSGT00990000210738.b	ENSGT00940000157250.e	ENSGT00390000018549.k	ENSGT00390000005197.a.cb.e.a #22	ENSGT01100000263563.c.b.c #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k.a #25	ENSGT00940000157221.x.i.b	ENSGT00940000153648.b.n	ENSGT00990000208579.b	ENSGT00980000201372	ENSGT00940000158194.o	ENSGT00600000085600.l	ENSGT00390000013368	ENSGT00510000047760.a	ENSGT00390000001189.b.i.d	ENSGT00390000007332.f #14	ENSGT01030000234532.B.e.a.a.a.b.d	ENSGT00390000008294.q.a.b
Oncorhynchus	ANCESTRAL SPECIES	31	ENSGT00940000155279.C.a.a.m.a.a.a	ENSGT00940000155150.a.b	ENSGT00940000159769.a.a.w.b	ENSGT00940000159954.a	ENSGT00940000153395.a.i	ENSGT00940000155475.h.i	ENSGT00390000012556.c #18	ENSGT00950000182850.a.b.a.a.a.a	ENSGT00950000183067.a.a.g	ENSGT01030000234563.b.a.a.k	ENSGT00390000005589.a.a.x	ENSGT00940000157318.b	ENSGT00990000210738.b	ENSGT00940000157250.e	ENSGT00390000018549.k	ENSGT00390000005197.a.cb.e.a #22	ENSGT01100000263563.c.b.c #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k.a #25	ENSGT01000000220453.A	ENSGT00940000157221.x.i.b	ENSGT00940000153582.a.m.a.a.b.b.b.a.b.a.a.b.a.a.a.a.b.b	ENSGT00940000153582.a.m.a.a.b.b.b.a.a.b.a.b.a	ENSGT00940000153648.b.n	ENSGT00990000208579.b	ENSGT00980000201372	ENSGT00940000158194.o	ENSGT00600000085600.l	ENSGT00390000013368	ENSGT00510000047760.a	ENSGT00390000001189.b.i.d
Rainbow trout	MODERN SPECIES	30	ENSOMYG00000003978	ENSOMYG00000005554	ENSOMYG00000052362	ENSOMYG00000071329	pde5ab (ENSOMYG00000007783)	ENSOMYG00000009006 #18	ABLIM2 (ENSOMYG00000009018)	AFAP1 (ENSOMYG00000076559)	SORCS2 (ENSOMYG00000009185)	grpel1 (ENSOMYG00000059030)	tada2b (ENSOMYG00000009315)	ENSOMYG00000076871	TBC1D14 (ENSOMYG00000009692)	kiaa0232 (ENSOMYG00000010844)	ENSOMYG00000010848	rbpjb (ENSOMYG00000010928) #22	CCKAR (ENSOMYG00000011008) #23	tbc1d19 (ENSOMYG00000011076) #24	STIM2 (ENSOMYG00000011343) #25	ENSOMYG00000072475	ENSOMYG00000011485	PCDH7 (ENSOMYG00000011494)	ENSOMYG00000058912	ENSOMYG00000011633	ENSOMYG00000064043	ENSOMYG00000055976	ENSOMYG00000039844	ENSOMYG00000011652	NWD2 (ENSOMYG00000011663)	ENSOMYG00000011682	ENSOMYG00000072923
Oncorhynchus_a	ANCESTRAL SPECIES	30	ENSGT00940000155279.C.a.a.m.a.a.a	ENSGT00940000155150.a.b	ENSGT00940000159769.a.a.w.b	ENSGT00940000159954.a	ENSGT00940000153395.a.i	ENSGT00940000155475.h.i	ENSGT00390000012556.c #18	ENSGT00950000182850.a.b.a.a.a.a	ENSGT00950000183067.a.a.g	ENSGT01030000234563.b.a.a.k	ENSGT00390000005589.a.a.x	ENSGT00940000157318.b	ENSGT00990000210738.b	ENSGT00940000157250.e	ENSGT00390000018549.k	ENSGT00390000005197.a.cb.e.a #22	ENSGT01100000263563.c.b.c #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k.a #25	ENSGT01000000220453.A	ENSGT00940000157221.x.i.b	ENSGT00940000153582.a.m.a.a.b.b.b.a.b.a.a.b.a.a.a.a.b.b	ENSGT00940000153582.a.m.a.a.b.b.b.a.a.b.a.b.a	ENSGT00940000153648.b.n	ENSGT00990000208579.b	ENSGT00940000158194.o	ENSGT00600000085600.l	ENSGT00390000013368	ENSGT00510000047760.a	ENSGT00390000001189.b.i.d	ENSGT00390000007332.f #14
Coho salmon	MODERN SPECIES	7	ENSOKIG00005038578	ENSOKIG00005038607	znf16l (ENSOKIG00005038813)	ENSOKIG00005039598	ARSJ (ENSOKIG00005040154)	MAD2L1 (ENSOKIG00005040164)	pde5ab (ENSOKIG00005040433)	ABLIM2 (ENSOKIG00005043756)	zcchc4 (ENSOKIG00005043797) #18	AFAP1 (ENSOKIG00005043840)	SORCS2 (ENSOKIG00005043962)	GRPEL1 (ENSOKIG00005044114)	tada2b (ENSOKIG00005044130)	TBC1D14 (ENSOKIG00005044210)	KIAA0232 (ENSOKIG00005044699)	rbpjb (ENSOKIG00005044732) #22	CCKAR (ENSOKIG00005044891) #23	tbc1d19 (ENSOKIG00005044905) #24	STIM2 (ENSOKIG00005044980) #25	ENSOKIG00005045149	ENSOKIG00005045153	ENSOKIG00005045158	ENSOKIG00005045163	ENSOKIG00005045168	PCDH7 (ENSOKIG00005045176)	ENSOKIG00005045188	ENSOKIG00005045203	ENSOKIG00005045216	ENSOKIG00005045227	NWD2 (ENSOKIG00005045236)	ING2 (ENSOKIG00005045246)
Chinook salmon	MODERN SPECIES	1	znf16l (ENSOTSG00005017512)	ANK2 (ENSOTSG00005017559)	camk2d1 (ENSOTSG00005032430)	mad2l1 (ENSOTSG00005032959)	pde5ab (ENSOTSG00005032979)	zcchc4 (ENSOTSG00005033936) #18	ABLIM2 (ENSOTSG00005033937)	AFAP1 (ENSOTSG00005033946)	SORCS2 (ENSOTSG00005033948)	grpel1 (ENSOTSG00005033954)	tada2b (ENSOTSG00005033957)	ENSOTSG00005033959	TBC1D14 (ENSOTSG00005033971)	ENSOTSG00005000732	kiaa0232 (ENSOTSG00005001061)	rbpjb (ENSOTSG00005001100) #22	CCKAR (ENSOTSG00005001452) #23	tbc1d19 (ENSOTSG00005001461) #24	STIM2 (ENSOTSG00005001632) #25	ENSOTSG00005001636	PCDH7 (ENSOTSG00005001637)	ENSOTSG00005001641	ENSOTSG00005001643	ENSOTSG00005001644	ENSOTSG00005001647	NWD2 (ENSOTSG00005001652)	ENSOTSG00005001649	ing2 (ENSOTSG00005001653)	ENSOTSG00005001654	slx1b (ENSOTSG00005001656)	zgc:112271 (ENSOTSG00005001657)
Salmo	ANCESTRAL SPECIES	18	ENSGT01100000263495.E.m.b.b	ENSGT00940000159769.a.a.w.b	ENSGT00940000159954.a	ENSGT00940000153395.a.i	ENSGT00940000155475.h.i	ENSGT00390000012556.c #18	ENSGT00950000182850.a.b.a.a.a.a	ENSGT00950000183067.a.a.g	ENSGT01030000234563.b.a.a.k	ENSGT00390000005589.a.a.x	ENSGT00940000157318.b	ENSGT00990000210738.b	ENSGT00940000157250.e	ENSGT00390000018549.k	ENSGT00390000018895.a.m.a	ENSGT00390000005197.a.cb.e.a #22	ENSGT01100000263563.c.b.c #23	ENSGT00390000015965 #24	ENSGT00390000000214.a.b.k.a #25	ENSGT00990000211390	ENSGT00940000157221.x.i.b	ENSGT00940000165320	ENSGT00940000159817.jb.b	ENSGT00940000157424.m.b.b	ENSGT00510000047611.ub	ENSGT00390000012961.o	ENSGT00940000161147.c	ENSGT00940000156576.g	ENSGT00950000183144.A	ENSGT00390000000938.mb	ENSGT00940000161220
Atlantic salmon	MODERN SPECIES	9	ENSSSAG00000081908	pde5ab (ENSSSAG00000061144)	zcchc4 (ENSSSAG00000087227) #18	ABLIM2 (ENSSSAG00000060413)	ENSSSAG00000083801	AFAP1 (ENSSSAG00000060218)	SORCS2 (ENSSSAG00000049497)	GRPEL1 (ENSSSAG00000049102)	tada2b (ENSSSAG00000086629)	ENSSSAG00000049074	TBC1D14 (ENSSSAG00000043970)	KIAA0232 (ENSSSAG00000043817)	ENSSSAG00000092477	ENSSSAG00000043781	ENSSSAG00000083639	rbpjb (ENSSSAG00000041441) #22	CCKAR (ENSSSAG00000088509) #23	tbc1d19 (ENSSSAG00000041126) #24	STIM2 (ENSSSAG00000003054) #25	ENSSSAG00000103714	ENSSSAG00000040796	PCDH7 (ENSSSAG00000040782)	ENSSSAG00000084771	ENSSSAG00000101180	ENSSSAG00000108518	ENSSSAG00000004372	ENSSSAG00000006734	ENSSSAG00000002163	NWD2 (ENSSSAG00000093983)	ENSSSAG00000040871	ENSSSAG00000095767
River trout	MODERN SPECIES	35	ENSSTUG00000032175	ARSJ (ENSSTUG00000032060)	mad2l1 (ENSSTUG00000032049)	pde5ab (ENSSTUG00000031450)	zcchc4 (ENSSTUG00000031388) #18	ABLIM2 (ENSSTUG00000030413)	AFAP1 (ENSSTUG00000030368)	ENSSTUG00000030361	SORCS2 (ENSSTUG00000029672)	grpel1 (ENSSTUG00000029638)	tada2b (ENSSTUG00000029631)	ENSSTUG00000029612	TBC1D14 (ENSSTUG00000027130)	kiaa0232 (ENSSTUG00000027072)	ENSSTUG00000027066	rbpjb (ENSSTUG00000026772) #22	CCKAR (ENSSTUG00000050267) #23	tbc1d19 (ENSSTUG00000050255) #24	STIM2 (ENSSTUG00000050244) #25	ENSSTUG00000050236	PCDH7 (ENSSTUG00000050235)	ENSSTUG00000050232	NWD2 (ENSSTUG00000050231)	ENSSTUG00000050228	ENSSTUG00000050227	ENSSTUG00000050225	ing2 (ENSSTUG00000050221)	ENSSTUG00000050219	slx1b (ENSSTUG00000050214)	zgc:112271 (ENSSTUG00000050210)	COL25A1 (ENSSTUG00000050163)
Huchen	MODERN SPECIES	313									grpel1 (ENSHHUG00000033290)	tada2b (ENSHHUG00000033293)	ENSHHUG00000033296	TBC1D14 (ENSHHUG00000033306)	kiaa0232 (ENSHHUG00000033456)	ENSHHUG00000033464	ENSHHUG00000033466	rbpjb (ENSHHUG00000033473) #22	CCKAR (ENSHHUG00000033512) #23	tbc1d19 (ENSHHUG00000033554) #24	STIM2 (ENSHHUG00000033590) #25
Salmoninae	ANCESTRAL SPECIES	189				ENSGT01030000234563.b.a.a.l.a	ENSGT00390000005589.a.a.w	ENSGT00940000157318.a	ENSGT00940000154521.A	ENSGT01030000234940.g	ENSGT00990000210738	ENSGT00940000157250.f	ENSGT00390000018549.l	ENSGT00940000162871	ENSGT00940000177059	ENSGT01030000234638.b.a.b.c	ENSGT00390000002398	ENSGT00390000005197.a.cb.e.b #22	ENSGT01100000263563.c.b.d #23	ENSGT00390000000214.a.b.k.b #25	ENSGT00970000198440	ENSGT00940000157221.x.i.a	ENSGT00940000167169.d	ENSGT00940000153648.b.m	ENSGT00990000208579.a	ENSGT00940000159709	ENSGT00940000159217.n	ENSGT00940000159264.f.c.a	ENSGT00940000159264.f.d	ENSGT00940000162334	ENSGT00390000000527	ENSGT00390000017455	ENSGT00940000166804.d
Salmoninae_a	ANCESTRAL SPECIES	101	ENSGT00940000157318.a	ENSGT00940000154521.A	ENSGT01030000234940.g	ENSGT00940000162710.c.a.c.a	ENSGT00940000163421.a.d.a.b.a	ENSGT00940000163421.a.d.a.b.b	ENSGT00940000159150.ab	ENSGT00940000155010.a	ENSGT01100000263482.F	ENSGT00940000157250.f	ENSGT00390000018549.l	ENSGT00940000162871	ENSGT00940000177059.a	ENSGT01030000234638.b.a.b.c	ENSGT00390000002398	ENSGT00390000005197.a.cb.e.b #22	ENSGT01100000263563.c.b.d #23	ENSGT00390000000214.a.b.k.b #25	ENSGT01100000263473.a.b.h.b.k.a	ENSGT00940000157221.x.i.a	ENSGT00940000167169.d	ENSGT00940000153648.b.m	ENSGT00990000208579.a	ENSGT00940000159709	ENSGT00940000159217.n	ENSGT00940000159264.f.c.a	ENSGT00940000162334	ENSGT00390000000527	ENSGT00390000017455	ENSGT00940000166804.d	ENSGT00940000158971
Salmo	ANCESTRAL SPECIES	49	ENSGT00940000156431.u	ENSGT00390000006293.t.b	ENSGT00940000156938.e.g.b	ENSGT00940000163421.a.d.a.a.f.a.a.b	ENSGT00940000166375.h	ENSGT00940000163421.a.d.a.a.f.b	ENSGT00940000159150.ab	ENSGT00940000155010.a	ENSGT01100000263482.F	ENSGT00940000157250.f	ENSGT00390000018549.l	ENSGT00940000162871	ENSGT00940000177059.a	ENSGT01030000234638.b.a.b.c	ENSGT00390000002398	ENSGT00390000005197.a.cb.e.b #22	ENSGT01100000263563.c.b.d #23	ENSGT00390000000214.a.b.k.b #25	ENSGT01100000263473.a.b.h.b.k.b.a.b.a	ENSGT01100000263473.a.b.h.b.k.a	ENSGT00940000157221.x.i.a	ENSGT00940000167169.d	ENSGT00940000153648.b.m	ENSGT00990000208579.a	ENSGT00940000159709	ENSGT00940000159217.n	ENSGT00940000159264.f.c.a	ENSGT00940000162334	ENSGT00390000000527	ENSGT00390000017455	ENSGT01030000235360
River trout	MODERN SPECIES	38	SORCS2 (ENSSTUG00000005480)	grpel1 (ENSSTUG00000005439)	tada2b (ENSSTUG00000005427)	ccdc96 (ENSSTUG00000005424)	ENSSTUG00000005406	ENSSTUG00000005370	ENSSTUG00000005355	TBC1D14 (ENSSTUG00000003515)	kiaa0232 (ENSSTUG00000003427)	S100P (ENSSTUG00000003417)	ENSSTUG00000003406	MAN2B2 (ENSSTUG00000003373)	ENSSTUG00000003357	MAN2B2 (ENSSTUG00000002807)	smim20 (ENSSTUG00000002761)	rbpjb (ENSSTUG00000002520) #22	CCKAR (ENSSTUG00000002506) #23	ENSSTUG00000002494	STIM2 (ENSSTUG00000002272) #25	ENSSTUG00000002257	ENSSTUG00000002240	ENSSTUG00000002239	ENSSTUG00000002236	ENSSTUG00000002227	ENSSTUG00000002176	PCDH7 (ENSSTUG00000002164)	ENSSTUG00000002154	ENSSTUG00000002153	ENSSTUG00000001897	NWD2 (ENSSTUG00000001854)	ENSSTUG00000001833
Atlantic salmon	MODERN SPECIES	26	grpel1 (ENSSSAG00000116289)	tada2b (ENSSSAG00000119094)	ENSSSAG00000089298	ccdc96 (ENSSSAG00000005913)	ENSSSAG00000059975	ENSSSAG00000062059	ENSSSAG00000005906	ENSSSAG00000014842	ENSSSAG00000003774	tbc1d14 (ENSSSAG00000003821)	kiaa0232 (ENSSSAG00000004682)	s100p (ENSSSAG00000004690)	man2b2 (ENSSSAG00000004837)	smim20 (ENSSSAG00000005897)	CCKAR (ENSSSAG00000003097) #23	ENSSSAG00000003166 #22	STIM2 (ENSSSAG00000040955) #25	ENSSSAG00000100672	ENSSSAG00000056676	ENSSSAG00000056685	ENSSSAG00000003042	ENSSSAG00000003074	ENSSSAG00000082471	ENSSSAG00000115209	ENSSSAG00000114796	ENSSSAG00000090682	ENSSSAG00000113718	PCDH7 (ENSSSAG00000003088)	ENSSSAG00000092620	ENSSSAG00000111088	NWD2 (ENSSSAG00000002877)
Oncorhynchus	ANCESTRAL SPECIES	9	ENSGT00940000157318.a	ENSGT00940000154521.A	ENSGT01030000234940.g	ENSGT00940000162710.c.a.c.a	ENSGT00940000163421.a.d.a.b.a	ENSGT00940000163421.a.d.a.b.b.b	ENSGT00940000159150.ab.e	ENSGT00940000155010.a	ENSGT01100000263482.F	ENSGT00940000157250.f	ENSGT00390000018549.l	ENSGT00940000162871	ENSGT00940000177059.a	ENSGT01030000234638.b.a.b.c	ENSGT00390000002398	ENSGT00390000005197.a.cb.e.b #22	ENSGT01100000263563.c.b.d #23	ENSGT00390000000214.a.b.k.b #25	ENSGT00940000153648.b.m	ENSGT00990000208579.a	ENSGT00940000159709	ENSGT00940000159217.n	ENSGT00940000159264.f.d	ENSGT00940000162334	ENSGT00390000000527	ENSGT00390000017455	ENSGT00940000166804.d	ENSGT00940000158971	ENSGT01090000260859.b	ENSGT00390000015545	ENSGT00940000167021
Oncorhynchus_a	ANCESTRAL SPECIES	16	ENSGT01030000234563.b.a.a.l.a	ENSGT00390000005589.a.a.w	ENSGT00940000157318.a	ENSGT00940000154521.A	ENSGT01030000234940.g	ENSGT00940000162710.c.a.c.a	ENSGT00940000163421.a.d.a.b.b.b	ENSGT00940000159150.ab.e	ENSGT00940000155010.a	ENSGT01100000263482.F	ENSGT00940000157250.f	ENSGT00390000018549.l	ENSGT00940000162871	ENSGT01030000234638.b.a.b.c	ENSGT00390000002398	ENSGT00390000005197.a.cb.e.b #22	ENSGT01100000263563.c.b.d #23	ENSGT00390000000214.a.b.k.b #25
Coho salmon	MODERN SPECIES	29	AFAP1 (ENSOKIG00005024960)	SORCS2 (ENSOKIG00005025020)	grpel1 (ENSOKIG00005025162)	tada2b (ENSOKIG00005025191)	ccdc96 (ENSOKIG00005025208)	ENSOKIG00005025215	ENSOKIG00005025275	ENSOKIG00005025498	TBC1D14 (ENSOKIG00005025524)	kiaa0232 (ENSOKIG00005025740)	S100P (ENSOKIG00005025743)	ENSOKIG00005025758	MAN2B2 (ENSOKIG00005025814)	ENSOKIG00005026694	smim20 (ENSOKIG00005026709)	rbpjb (ENSOKIG00005026727) #22	CCKAR (ENSOKIG00005026800) #23	STIM2 (ENSOKIG00005026826) #25	ENSOKIG00005026882	ENSOKIG00005026896	ENSOKIG00005026916	ENSOKIG00005026929	PCDH7 (ENSOKIG00005026956)	ENSOKIG00005027006	ENSOKIG00005027014	ENSOKIG00005027016	ENSOKIG00005027027	ENSOKIG00005027038	ENSOKIG00005027054	NWD2 (ENSOKIG00005027071)	ENSOKIG00005027094
Huchen	MODERN SPECIES	5094																ENSHHUG00000051311 #22	CCKAR (ENSHHUG00000051309) #23
Salmoninae	ANCESTRAL SPECIES																	ENSGT00390000005197.a.cb.f #22
Huchen	MODERN SPECIES	8235																ENSHHUG00000004457 #22	ENSHHUG00000004455 #25	ENSHHUG00000004450 ##25
Salmoninae_a	DUPLICATION
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00390000005197.a.cb.f.a #22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00390000005197.a.cb.f.a #22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00390000005197.a.cb.f.a #22
Chinook salmon	MODERN SPECIES	403																ENSOTSG00005013724 #22	CCKAR (ENSOTSG00005013722) #23
Salmoninae_a	DUPLICATION
Salmoninae_a	ANCESTRAL SPECIES	1024																ENSGT00390000005197.a.cb.f.b.a #22	ENSGT00390000000214.a.b.l.d.a #25
Oncorhynchus	ANCESTRAL SPECIES	144										ENSGT00940000155527.j.b.d.b	ENSGT00390000017890.b.a.l	ENSGT00390000017890.b.a.k	ENSGT00390000011749.q.a	ENSGT00410000029064.a	ENSGT00390000001491.a	ENSGT00390000005197.a.cb.f.b.a #22	ENSGT00940000165832.r.b	ENSGT00940000157037.a.c.b	ENSGT00940000164532.a	ENSGT00940000164532.b.b	ENSGT00940000156228.p	ENSGT00940000167973.e.b.b.b
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00390000005197.a.cb.f.b.a #22
Coho salmon	MODERN SPECIES	1405										ENSOKIG00005049191	DCTN6 (ENSOKIG00005049198)	gtf2e2 (ENSOKIG00005049211)	smim18 (ENSOKIG00005049217)	ENSOKIG00005049228	ENSOKIG00005049263	ENSOKIG00005049322 #22	ENSOKIG00005049577 #25
Rainbow trout	MODERN SPECIES	47											ENSOMYG00000059258	ENSOMYG00000074253	ENSOMYG00000074924	ENSOMYG00000055128	ENSOMYG00000065159	ENSOMYG00000050874 #22	ENSOMYG00000057321 #25
Salmo	ANCESTRAL SPECIES	696																ENSGT00390000005197.a.cb.f.b.a #22	ENSGT00390000000214.a.b.l.d.b #25
River trout	DUPLICATION
River trout	MODERN SPECIES	404	pcdh18a (ENSSTUG00000021752)	ENSSTUG00000021811	ENSSTUG00000021825	ENSSTUG00000021843	pcdh18a (ENSSTUG00000021846)	pcdh10a (ENSSTUG00000021851)	TYRP1 (ENSSTUG00000021874)	ENSSTUG00000022028	ENSSTUG00000022065	ENSSTUG00000022139	ENSSTUG00000022150	DCTN6 (ENSSTUG00000022165)	gtf2e2 (ENSSTUG00000022255)	smim18 (ENSSTUG00000022332)	ENSSTUG00000022357	ENSSTUG00000022744 #22	ENSSTUG00000023011 #25	ENSSTUG00000023102	zgc:195282 (ENSSTUG00000023153)	ENSSTUG00000023173	ENSSTUG00000023205	ENSSTUG00000023327 #22	ENSSTUG00000023374 #25	ENSSTUG00000023458	ENSSTUG00000023491	ENSSTUG00000023665	ENSSTUG00000023669	ENSSTUG00000023681	ENSSTUG00000023693	ENSSTUG00000023707	ENSSTUG00000023714
River trout	MODERN SPECIES	404	TYRP1 (ENSSTUG00000021874)	ENSSTUG00000022028	ENSSTUG00000022065	ENSSTUG00000022139	ENSSTUG00000022150	DCTN6 (ENSSTUG00000022165)	gtf2e2 (ENSSTUG00000022255)	smim18 (ENSSTUG00000022332)	ENSSTUG00000022357	ENSSTUG00000022744 #22	ENSSTUG00000023011 #25	ENSSTUG00000023102	zgc:195282 (ENSSTUG00000023153)	ENSSTUG00000023173	ENSSTUG00000023205	ENSSTUG00000023327 #22	ENSSTUG00000023374 #25	ENSSTUG00000023458	ENSSTUG00000023491	ENSSTUG00000023665	ENSSTUG00000023669	ENSSTUG00000023681	ENSSTUG00000023693	ENSSTUG00000023707	ENSSTUG00000023714	ENSSTUG00000023721	ENSSTUG00000023748	ENSSTUG00000023753	ENSSTUG00000023765	ENSSTUG00000023791	ENSSTUG00000023803
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00390000005197.a.cb.f.b.b #22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00390000005197.a.cb.f.b.b #22
Rainbow trout	MODERN SPECIES	13	AFAP1 (ENSOMYG00000009076)	ENSOMYG00000056156	SORCS2 (ENSOMYG00000022367)	grpel1 (ENSOMYG00000022403)	tada2b (ENSOMYG00000022418)	ccdc96 (ENSOMYG00000022426)	ENSOMYG00000022432	ENSOMYG00000022449	ENSOMYG00000067246	TBC1D14 (ENSOMYG00000022537)	KIAA0232 (ENSOMYG00000022849)	S100P (ENSOMYG00000022859)	ENSOMYG00000022870	MAN2B2 (ENSOMYG00000023014)	SMIM20 (ENSOMYG00000023589)	ENSOMYG00000023659 #22	CCKAR (ENSOMYG00000023749) #23	STIM2 (ENSOMYG00000023950) #25	ENSOMYG00000048575	ENSOMYG00000025093	ENSOMYG00000049298	ENSOMYG00000058749	ENSOMYG00000058014	ENSOMYG00000054841	ENSOMYG00000025148	PCDH7 (ENSOMYG00000025183)	ENSOMYG00000025295	ENSOMYG00000075927	NWD2 (ENSOMYG00000025344)	ENSOMYG00000068557	ENSOMYG00000050026