Amniota ANCESTRAL SPECIES 2 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.b ##19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00980000201267 ENSGT00940000177623 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00940000174987 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT01030000234945 #29 ENSGT00940000157221 #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000165320 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT01030000235076 ENSGT00940000157949 Mammalia ANCESTRAL SPECIES 1 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00940000174987 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT01030000234945 #29 ENSGT00940000157221 #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000165320 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT01030000235076 ENSGT00940000157949 Theria ANCESTRAL SPECIES 6 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00940000174987 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT01030000234945 #29 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000165320 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT01030000235076 ENSGT00940000157949 Eutheria ANCESTRAL SPECIES 2 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00940000174987 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT01030000234945 #29 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000165320 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT01030000235076 ENSGT00940000157949 Boreoeutheria ANCESTRAL SPECIES 8 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00940000174987 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00860000135660 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000165320 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT01030000235076 ENSGT00940000169973 Euarchontoglires ANCESTRAL SPECIES 9 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00940000174987 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00860000135660 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT01030000235076 ENSGT00940000157949 ENSGT00900000143434 Primates ANCESTRAL SPECIES 10 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00940000174987 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00860000135660 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT01030000235076 ENSGT00940000157949 ENSGT00900000143434 Haplorrhini ANCESTRAL SPECIES 23 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00940000174987 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00860000135660 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT01030000235076 ENSGT00940000157949 ENSGT00900000143434 Simiiformes ANCESTRAL SPECIES 10 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00940000174987 ENSGT00390000015965 #24 ENSGT00390000008128.c.a.b #26 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00860000135660 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00900000143434 Catarrhini ANCESTRAL SPECIES 14 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00940000174987 ENSGT00390000015965 #24 ENSGT00390000008128.c.a.b #26 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT01030000234945 #29 ENSGT00910000147204 #30 ENSGT00860000135660 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 Hominoidea ANCESTRAL SPECIES 10 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00940000174987 ENSGT00390000015965 #24 ENSGT00390000008128.c.a.b #26 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00860000135660 ENSGT01030000234945 #29 ENSGT00910000147204 #30 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 Hominidae ANCESTRAL SPECIES 12 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00940000174987 ENSGT00390000015965 #24 ENSGT00390000008128.c.a.b #26 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00860000135660 ENSGT01030000234945 #29 ENSGT00910000147204 #30 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 Homo/Pan/Gorilla group ANCESTRAL SPECIES 11 ENSGT00940000157235 #7 ENSGT00950000182891.a.a.b.a.b.a.s.c.a #8 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00940000174987 ENSGT00390000015965 #24 ENSGT00390000008128.c.a.b #26 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT01030000234945 #29 ENSGT00910000147204 #30 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00770000121815 Homo/Pan group ANCESTRAL SPECIES 10 ENSGT00940000157235 #7 ENSGT00950000182891.a.a.b.a.b.a.s.c.a #8 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00940000174987 ENSGT00390000015965 #24 ENSGT00390000008128.c.a.b #26 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT01030000234945 #29 ENSGT00910000147204 #30 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00770000121815 Pan ANCESTRAL SPECIES 7 ENSGT00940000157235 #7 ENSGT00950000182891.a.a.b.a.b.a.s.c.a #8 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00940000174987 ENSGT00390000015965 #24 ENSGT00390000008128.c.a.b #26 ENSGT00390000000214.a.b #25 ENSGT00510000047602.q.a.b #27 ENSGT00940000157221 #28 ENSGT01030000234945 #29 ENSGT00910000147204 #30 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00950000182922.a.a.a.a.v.a.b #36 Chimpanzee DUPLICATION Chimpanzee MODERN SPECIES 17 ADGRA3 (ENSPTRG00000015949) #7 ENSPTRG00000042867 #8 GBA3 (ENSPTRG00000043929) #9 PPARGC1A (ENSPTRG00000015954) #10 DHX15 (ENSPTRG00000015955) #11 SOD3 (ENSPTRG00000015956) #12 CCDC149 (ENSPTRG00000015957) #13 LGI2 (ENSPTRG00000045126) #14 SEPSECS (ENSPTRG00000015959) #15 PI4K2B (ENSPTRG00000015960) #16 ZCCHC4 (ENSPTRG00000015962) #17 ANAPC4 (ENSPTRG00000015963) #18 SLC34A2 (ENSPTRG00000015965) #19 SEL1L3 (ENSPTRG00000015966) #20 ENSPTRG00000015967 #21 RBPJ (ENSPTRG00000015968) #22 CCKAR (ENSPTRG00000015969) #23 TBC1D19 (ENSPTRG00000015970) #24 STIM2 (ENSPTRG00000015971) #25 ENSPTRG00000052671 #26 ENSPTRG00000045470 #27 PCDH7 (ENSPTRG00000015972) #28 ENSPTRG00000051795 #29 ENSPTRG00000044907 #30 ARAP2 (ENSPTRG00000015973) #31 DTHD1 (ENSPTRG00000022641) #32 NWD2 (ENSPTRG00000015976) #33 C4H4orf19 (ENSPTRG00000015977) #34 RELL1 (ENSPTRG00000015978) #35 ENSPTRG00000045616 #36 PGM2 (ENSPTRG00000015979) #37 Chimpanzee DUPLICATION Chimpanzee MODERN SPECIES 22 PRKACG (ENSPTRG00000021003) PIP5K1B (ENSPTRG00000021001) TMEM252 (ENSPTRG00000046632) PGM5 (ENSPTRG00000020999) ENSPTRG00000046738 ENSPTRG00000023301 ENSPTRG00000047309 FOXD4L4 (ENSPTRG00000029251) ENSPTRG00000043500 ENSPTRG00000045680 ENSPTRG00000012453 ENSPTRG00000045466 ENSPTRG00000044630 ENSPTRG00000045832 ENSPTRG00000047349 ENSPTRG00000051438 ##22 ENSPTRG00000044230 ENSPTRG00000047131 ENSPTRG00000050918 ENSPTRG00000020961 ENSPTRG00000044054 FAM240B (ENSPTRG00000045884) ANKRD18A (ENSPTRG00000020959) ENSPTRG00000042856 ENSPTRG00000046180 IGFBPL1 (ENSPTRG00000020957) ALDH1B1 (ENSPTRG00000020956) SHB (ENSPTRG00000020955) SLC25A51 (ENSPTRG00000020954) DCAF10 (ENSPTRG00000020953) EXOSC3 (ENSPTRG00000020952) Chimpanzee MODERN SPECIES 678 ENSPTRG00000050028 ENSPTRG00000046898 ##22 Bonobo DUPLICATION Bonobo MODERN SPECIES 245 ENSPPAG00000029110 #22 Bonobo MODERN SPECIES 17 ADGRA3 (ENSPPAG00000035849) #7 ENSPPAG00000011801 #8 GBA3 (ENSPPAG00000040905) #9 PPARGC1A (ENSPPAG00000034694) #10 DHX15 (ENSPPAG00000030385) #11 SOD3 (ENSPPAG00000022679) #12 CCDC149 (ENSPPAG00000040269) #13 LGI2 (ENSPPAG00000043039) #14 SEPSECS (ENSPPAG00000037022) #15 PI4K2B (ENSPPAG00000040564) #16 ZCCHC4 (ENSPPAG00000031116) #17 ANAPC4 (ENSPPAG00000040743) #18 SLC34A2 (ENSPPAG00000031554) #19 SEL1L3 (ENSPPAG00000026819) #20 SMIM20 (ENSPPAG00000037198) #21 RBPJ (ENSPPAG00000042016) #22 CCKAR (ENSPPAG00000027751) #23 ENSPPAG00000027805 TBC1D19 (ENSPPAG00000039764) #24 STIM2 (ENSPPAG00000031199) #25 ENSPPAG00000016299 #26 ENSPPAG00000042295 #27 ENSPPAG00000042304 #28 ENSPPAG00000000803 #30 ENSPPAG00000011861 ENSPPAG00000043616 ARAP2 (ENSPPAG00000039913) #31 DTHD1 (ENSPPAG00000036797) #32 NWD2 (ENSPPAG00000043576) #33 C4orf19 (ENSPPAG00000036566) #34 RELL1 (ENSPPAG00000030468) #35 Human MODERN SPECIES 16 KCNIP4 (ENSG00000185774) ADGRA3 (ENSG00000152990) #7 GBA3 (ENSG00000249948) #9 PPARGC1A (ENSG00000109819) #10 DHX15 (ENSG00000109606) #11 SOD3 (ENSG00000109610) #12 CCDC149 (ENSG00000181982) #13 LGI2 (ENSG00000153012) #14 SEPSECS (ENSG00000109618) #15 PI4K2B (ENSG00000038210) #16 ZCCHC4 (ENSG00000168228) #17 ANAPC4 (ENSG00000053900) #18 SLC34A2 (ENSG00000157765) #19 SEL1L3 (ENSG00000091490) #20 SMIM20 (ENSG00000250317) #21 RBPJ (ENSG00000168214) #22 CCKAR (ENSG00000163394) #23 TBC1D19 (ENSG00000109680) #24 STIM2 (ENSG00000109689) #25 PCDH7 (ENSG00000169851) #28 ARAP2 (ENSG00000047365) #31 DTHD1 (ENSG00000197057) #32 NWD2 (ENSG00000174145) #33 C4orf19 (ENSG00000154274) #34 RELL1 (ENSG00000181826) #35 PGM2 (ENSG00000169299) #37 TBC1D1 (ENSG00000065882) PTTG2 (ENSG00000250254) KLF3 (ENSG00000109787) TLR10 (ENSG00000174123) TLR1 (ENSG00000174125) Gorilla DUPLICATION Gorilla MODERN SPECIES 96 ENSGGOG00000037805 #22 Gorilla MODERN SPECIES 17 ENSGGOG00000038375 ADGRA3 (ENSGGOG00000026666) #7 ENSGGOG00000026378 #8 GBA3 (ENSGGOG00000013597) #9 PPARGC1A (ENSGGOG00000009810) #10 DHX15 (ENSGGOG00000016819) #11 CCDC149 (ENSGGOG00000010166) #13 LGI2 (ENSGGOG00000023809) #14 SEPSECS (ENSGGOG00000025528) #15 PI4K2B (ENSGGOG00000014057) #16 ZCCHC4 (ENSGGOG00000016476) #17 ANAPC4 (ENSGGOG00000025631) #18 SLC34A2 (ENSGGOG00000016668) #19 SEL1L3 (ENSGGOG00000001417) #20 ENSGGOG00000013757 #21 RBPJ (ENSGGOG00000004582) #22 CCKAR (ENSGGOG00000015177) #23 TBC1D19 (ENSGGOG00000025239) #24 STIM2 (ENSGGOG00000000474) #25 ENSGGOG00000038446 #26 PCDH7 (ENSGGOG00000004233) #28 ENSGGOG00000043031 #29 ENSGGOG00000043518 #30 ENSGGOG00000038770 ENSGGOG00000040174 ARAP2 (ENSGGOG00000007115) #31 DTHD1 (ENSGGOG00000009433) #32 NWD2 (ENSGGOG00000016156) #33 C4orf19 (ENSGGOG00000017146) #34 RELL1 (ENSGGOG00000014944) #35 PGM2 (ENSGGOG00000013725) #37 Orangutan MODERN SPECIES 17 GBA3 (ENSPPYG00000014639) #9 PPARGC1A (ENSPPYG00000014640) #10 DHX15 (ENSPPYG00000014641) #11 ENSPPYG00000036250 SOD3 (ENSPPYG00000014642) #12 CCDC149 (ENSPPYG00000014643) #13 LGI2 (ENSPPYG00000039828) #14 SEPSECS (ENSPPYG00000014645) #15 PI4K2B (ENSPPYG00000014646) #16 ZCCHC4 (ENSPPYG00000014647) #17 ANAPC4 (ENSPPYG00000034769) #18 SLC34A2 (ENSPPYG00000014649) #19 ENSPPYG00000031785 SEL1L3 (ENSPPYG00000014650) #20 SMIM20 (ENSPPYG00000014651) #21 RBPJ (ENSPPYG00000014652) #22 CCKAR (ENSPPYG00000014653) #23 TBC1D19 (ENSPPYG00000014654) #24 STIM2 (ENSPPYG00000014655) #25 PCDH7 (ENSPPYG00000031272) #28 ENSPPYG00000031494 #28 ENSPPYG00000034474 ARAP2 (ENSPPYG00000032983) #31 DTHD1 (ENSPPYG00000037872) #32 NWD2 (ENSPPYG00000030808) #33 C4orf19 (ENSPPYG00000038950) #34 RELL1 (ENSPPYG00000031559) #35 PGM2 (ENSPPYG00000014661) #37 TBC1D1 (ENSPPYG00000014663) KLF3 (ENSPPYG00000014666) TLR10 (ENSPPYG00000014667) Gibbon MODERN SPECIES 12 ENSNLEG00000027847 ##8 GBA3 (ENSNLEG00000016754) #9 PPARGC1A (ENSNLEG00000016760) #10 DHX15 (ENSNLEG00000016767) #11 SOD3 (ENSNLEG00000032570) #12 CCDC149 (ENSNLEG00000016779) #13 LGI2 (ENSNLEG00000016796) #14 SEPSECS (ENSNLEG00000016800) #15 PI4K2B (ENSNLEG00000016814) #16 ZCCHC4 (ENSNLEG00000016824) #17 ANAPC4 (ENSNLEG00000016831) #18 SLC34A2 (ENSNLEG00000016860) #19 SEL1L3 (ENSNLEG00000016867) #20 ENSNLEG00000016894 #21 ENSNLEG00000032692 RBPJ (ENSNLEG00000016895) #22 CCKAR (ENSNLEG00000016913) #23 TBC1D19 (ENSNLEG00000016920) #24 STIM2 (ENSNLEG00000016942) #25 ENSNLEG00000030375 #28 ENSNLEG00000030577 #30 ARAP2 (ENSNLEG00000016967) #31 DTHD1 (ENSNLEG00000016995) #32 NWD2 (ENSNLEG00000016998) #33 C4orf19 (ENSNLEG00000035513) #34 RELL1 (ENSNLEG00000017005) #35 PGM2 (ENSNLEG00000017010) #37 ENSNLEG00000035345 TBC1D1 (ENSNLEG00000017022) KLF3 (ENSNLEG00000017046) TLR10 (ENSNLEG00000017048) Cercopithecidae ANCESTRAL SPECIES 10 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000008128.c.a.b #26 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT01030000234945 #29 ENSGT00910000147204 #30 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00390000009693.m.b Cercopithecinae ANCESTRAL SPECIES 14 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000008128.c.a.b.a #26 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT01030000234945 #29 ENSGT00910000147204 #30 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00390000009693.m.b Vervet Monkey MODERN SPECIES 19 KCNIP4 (ENSCSAG00000016556) ADGRA3 (ENSCSAG00000016562) #7 GBA3 (ENSCSAG00000016567) #9 PPARGC1A (ENSCSAG00000016575) #10 DHX15 (ENSCSAG00000016601) #11 SOD3 (ENSCSAG00000019694) #12 CCDC149 (ENSCSAG00000016607) #13 LGI2 (ENSCSAG00000016614) #14 SEPSECS (ENSCSAG00000016622) #15 PI4K2B (ENSCSAG00000016627) #16 ZCCHC4 (ENSCSAG00000016633) #17 ANAPC4 (ENSCSAG00000016642) #18 SLC34A2 (ENSCSAG00000016651) #19 SEL1L3 (ENSCSAG00000016666) #20 ENSCSAG00000016669 #21 RBPJ (ENSCSAG00000016678) #22 CCKAR (ENSCSAG00000016683) #23 TBC1D19 (ENSCSAG00000016710) #24 ENSCSAG00000016720 #26 STIM2 (ENSCSAG00000016726) #25 ENSCSAG00000016727 PCDH7 (ENSCSAG00000016736) #28 ENSCSAG00000016748 ARAP2 (ENSCSAG00000016819) #31 DTHD1 (ENSCSAG00000016834) #32 NWD2 (ENSCSAG00000016836) #33 C4orf19 (ENSCSAG00000016838) #34 RELL1 (ENSCSAG00000016840) #35 PGM2 (ENSCSAG00000016846) #37 TBC1D1 (ENSCSAG00000016865) KLF3 (ENSCSAG00000016868) Cercopithecinae_a ANCESTRAL SPECIES 13 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398.i.a #21 ENSGT00390000014814.a.b.a.b.b ENSGT00390000002398.j #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000008128.c.a.b.a #26 ENSGT00390000000214.a.b #25 ENSGT00390000013931.a.b.b.`b.b ENSGT00940000157221 #28 ENSGT01030000234945 #29 ENSGT00910000147204 #30 ENSGT00910000147191 ENSGT00860000135660 ENSGT00940000164947 ENSGT00390000014092.k.a ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000170408 Macaca ANCESTRAL SPECIES 25 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398.i.a #21 ENSGT00390000014814.a.b.a.b.b ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000008128.c.a.b.a #26 ENSGT00390000000214.a.b #25 ENSGT00390000013931.a.b.b.`b.b ENSGT01030000234945 #29 ENSGT00940000157221 #28 ENSGT00910000147204 #30 ENSGT00910000147191 ENSGT00940000164947 ENSGT00390000014092.k.a ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00950000183010.a.a.a.b.a.a.a.a.b.a ENSGT00940000153648.b #33 Pig-tailed macaque MODERN SPECIES 141 GBA3 (ENSMNEG00000038431) #9 PPARGC1A (ENSMNEG00000028682) #10 ENSMNEG00000013564 DHX15 (ENSMNEG00000035145) #11 ENSMNEG00000005920 CCDC149 (ENSMNEG00000034296) #13 LGI2 (ENSMNEG00000015411) #14 SEPSECS (ENSMNEG00000041117) #15 PI4K2B (ENSMNEG00000010678) #16 ZCCHC4 (ENSMNEG00000027221) #17 ANAPC4 (ENSMNEG00000044256) #18 SLC34A2 (ENSMNEG00000033278) #19 SEL1L3 (ENSMNEG00000044018) #20 ENSMNEG00000045287 #21 ENSMNEG00000027453 RBPJ (ENSMNEG00000037915) #22 CCKAR (ENSMNEG00000038424) #23 TBC1D19 (ENSMNEG00000031445) #24 ENSMNEG00000032694 #26 STIM2 (ENSMNEG00000032563) #25 ENSMNEG00000029234 ENSMNEG00000038617 ENSMNEG00000034187 #29 PCDH7 (ENSMNEG00000044686) #28 ENSMNEG00000008266 #30 ENSMNEG00000010411 ENSMNEG00000034911 ENSMNEG00000019076 ARAP2 (ENSMNEG00000033019) #31 DTHD1 (ENSMNEG00000045184) #32 ENSMNEG00000043393 Macaca_a ANCESTRAL SPECIES 12 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00940000161627.a.a.a.a.b.a.a.b.a.a.a.a.a.a.a.a.a.b.a.b.b.a ENSGT01100000263493.a.b.a.a.b.a.a.b.b.b.a.b.a.a.a.a.a.b ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398.i.a #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000164709.a.b.b.a.a.b.b.b.b.a.b.a.c.b ENSGT00940000157221 #28 ENSGT01100000263493.a.a.a.b.a.a.b.a.b.a.a.a.a.b.b.a.b.b ENSGT00940000164947 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT01100000263493.a.b.a.a.a.b.b.b.b.c.a ENSGT01030000235076 Rhesus MODERN SPECIES 15 PPARGC1A (ENSMMUG00000001844) #10 DHX15 (ENSMMUG00000009637) #11 SOD3 (ENSMMUG00000002612) #12 CCDC149 (ENSMMUG00000004785) #13 ENSMMUG00000062929 ENSMMUG00000052018 LGI2 (ENSMMUG00000060440) #14 SEPSECS (ENSMMUG00000019784) #15 PI4K2B (ENSMMUG00000003629) #16 ANAPC4 (ENSMMUG00000004458) #18 ENSMMUG00000053638 ENSMMUG00000049554 SLC34A2 (ENSMMUG00000021135) #19 SEL1L3 (ENSMMUG00000020349) #20 ENSMMUG00000006680 #21 RBPJ (ENSMMUG00000015828) #22 CCKAR (ENSMMUG00000049298) #23 TBC1D19 (ENSMMUG00000019239) #24 STIM2 (ENSMMUG00000009439) #25 ENSMMUG00000055119 ENSMMUG00000060404 PCDH7 (ENSMMUG00000011898) #28 ENSMMUG00000056986 ENSMMUG00000062143 ENSMMUG00000059032 ARAP2 (ENSMMUG00000006871) #31 DTHD1 (ENSMMUG00000006875) #32 NWD2 (ENSMMUG00000003676) #33 C5H4orf19 (ENSMMUG00000009691) #34 RELL1 (ENSMMUG00000017630) #35 PGM2 (ENSMMUG00000000232) #37 Crab-eating macaque MODERN SPECIES 15 SOD3 (ENSMFAG00000020365) #12 ENSMFAG00000055313 CCDC149 (ENSMFAG00000042580) #13 LGI2 (ENSMFAG00000036970) #14 SEPSECS (ENSMFAG00000003516) #15 PI4K2B (ENSMFAG00000033102) #16 ENSMFAG00000056821 ZCCHC4 (ENSMFAG00000033636) #17 ANAPC4 (ENSMFAG00000037891) #18 ENSMFAG00000065080 ENSMFAG00000049099 SLC34A2 (ENSMFAG00000020407) #19 SEL1L3 (ENSMFAG00000002093) #20 SMIM20 (ENSMFAG00000033269) #21 ENSMFAG00000049001 RBPJ (ENSMFAG00000001779) #22 CCKAR (ENSMFAG00000003530) #23 TBC1D19 (ENSMFAG00000000286) #24 STIM2 (ENSMFAG00000034185) #25 ENSMFAG00000056885 ENSMFAG00000036136 PCDH7 (ENSMFAG00000040327) #28 ENSMFAG00000049710 ENSMFAG00000064925 ENSMFAG00000065581 ENSMFAG00000039044 ENSMFAG00000047594 ENSMFAG00000055627 ENSMFAG00000055647 ENSMFAG00000050317 ARAP2 (ENSMFAG00000041357) #31 Cercopithecinae_b ANCESTRAL SPECIES 6 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398.j #21 ENSGT00390000014814.a.b.a.b.b ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000008128.c.a.b.a #26 ENSGT00390000000214.a.b #25 ENSGT00390000013931.a.b.b.`b.b ENSGT00940000157221 #28 ENSGT01030000234945 #29 ENSGT00910000147204 #30 ENSGT00910000147191 ENSGT00860000135660 ENSGT00940000164947 ENSGT00390000014092.k.a ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000170408 Olive baboon MODERN SPECIES 13 CCDC149 (ENSPANG00000020855) #13 LGI2 (ENSPANG00000016910) #14 ENSPANG00000050688 SEPSECS (ENSPANG00000021177) #15 PI4K2B (ENSPANG00000024999) #16 ENSPANG00000008337 ZCCHC4 (ENSPANG00000013373) #17 ANAPC4 (ENSPANG00000019352) #18 ENSPANG00000037863 ENSPANG00000046005 SLC34A2 (ENSPANG00000043751) #19 ENSPANG00000041131 SEL1L3 (ENSPANG00000000072) #20 SMIM20 (ENSPANG00000032807) #21 ENSPANG00000030947 RBPJ (ENSPANG00000021176) #22 ENSPANG00000050241 CCKAR (ENSPANG00000019759) #23 ENSPANG00000045844 ENSPANG00000037534 TBC1D19 (ENSPANG00000019571) #24 ENSPANG00000033456 #26 STIM2 (ENSPANG00000016909) #25 ENSPANG00000042786 ENSPANG00000040765 ENSPANG00000043923 PCDH7 (ENSPANG00000015663) #28 ENSPANG00000043052 ENSPANG00000008054 ENSPANG00000046206 ARAP2 (ENSPANG00000021175) #31 Cercopithecinae_d ANCESTRAL SPECIES 91 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398.j #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000008128.c.a.b.a #26 ENSGT00390000000214.a.b #25 ENSGT00390000013931.a.b.b.`b.b ENSGT00940000157221 #28 ENSGT01030000234945 #29 ENSGT00910000147204 #30 ENSGT00910000147191 ENSGT00860000135660 Drill MODERN SPECIES 1453 RBPJ (ENSMLEG00000031229) #22 CCKAR (ENSMLEG00000030034) #23 TBC1D19 (ENSMLEG00000011583) #24 STIM2 (ENSMLEG00000022797) #25 Sooty mangabey MODERN SPECIES 551 ADGRA3 (ENSCATG00000042545) #7 GBA3 (ENSCATG00000042364) #9 PPARGC1A (ENSCATG00000032575) #10 ENSCATG00000022340 DHX15 (ENSCATG00000000715) #11 SOD3 (ENSCATG00000021168) #12 CCDC149 (ENSCATG00000037847) #13 LGI2 (ENSCATG00000043883) #14 SEPSECS (ENSCATG00000041245) #15 PI4K2B (ENSCATG00000015768) #16 ZCCHC4 (ENSCATG00000028628) #17 ANAPC4 (ENSCATG00000035985) #18 SLC34A2 (ENSCATG00000029842) #19 SEL1L3 (ENSCATG00000038183) #20 ENSCATG00000032458 #21 RBPJ (ENSCATG00000044181) #22 CCKAR (ENSCATG00000038819) #23 TBC1D19 (ENSCATG00000009189) #24 ENSCATG00000039543 #26 STIM2 (ENSCATG00000030868) #25 ENSCATG00000018899 ENSCATG00000044558 #29 PCDH7 (ENSCATG00000039870) #28 ENSCATG00000023352 #30 ENSCATG00000041818 Rhinopithecus ANCESTRAL SPECIES 553 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000014814.a.b.a.b.b ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00390000008128.c.a.b #26 Black snub-nosed monkey MODERN SPECIES 140 SEL1L3 (ENSRBIG00000040589) #20 ENSRBIG00000030320 #21 ENSRBIG00000015089 RBPJ (ENSRBIG00000040340) #22 CCKAR (ENSRBIG00000044006) #23 TBC1D19 (ENSRBIG00000032962) #24 STIM2 (ENSRBIG00000030774) #25 ENSRBIG00000041821 #26 Golden snub-nosed monkey DUPLICATION Golden snub-nosed monkey MODERN SPECIES 538 ENSRROG00000037809 #22 Golden snub-nosed monkey MODERN SPECIES 1367 SEL1L3 (ENSRROG00000006205) #20 SMIM20 (ENSRROG00000035862) #21 ENSRROG00000037997 ENSRROG00000024203 RBPJ (ENSRROG00000008767) #22 CCKAR (ENSRROG00000030028) #23 Platyrrhini ANCESTRAL SPECIES 5 ENSGT00940000158985.c ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000008128.c.a.b #26 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00860000135660 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247.e #37 ENSGT00390000009693.p.b ENSGT00940000157949 ENSGT00900000143434 Mas night monkey MODERN SPECIES 1274 PACRGL (ENSANAG00000026655) KCNIP4 (ENSANAG00000020849) ADGRA3 (ENSANAG00000029226) #7 GBA3 (ENSANAG00000033499) #9 PPARGC1A (ENSANAG00000035930) #10 DHX15 (ENSANAG00000020669) #11 CCDC149 (ENSANAG00000029354) #13 LGI2 (ENSANAG00000027724) #14 SEPSECS (ENSANAG00000035197) #15 PI4K2B (ENSANAG00000030238) #16 ZCCHC4 (ENSANAG00000034646) #17 ANAPC4 (ENSANAG00000028966) #18 SLC34A2 (ENSANAG00000020569) #19 SEL1L3 (ENSANAG00000035152) #20 SMIM20 (ENSANAG00000027622) #21 RBPJ (ENSANAG00000028890) #22 CCKAR (ENSANAG00000033444) #23 TBC1D19 (ENSANAG00000034488) #24 STIM2 (ENSANAG00000030101) #25 ENSANAG00000021496 #26 Cebidae ANCESTRAL SPECIES 4 ENSGT00940000158985.c ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00860000135660 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247.e #37 ENSGT00390000009693.p.b ENSGT00940000157949 ENSGT00900000143434 ENSGT00940000157456 Marmoset MODERN SPECIES 15 ENSCJAG00000083951 PPARGC1A (ENSCJAG00000013024) #10 DHX15 (ENSCJAG00000013069) #11 ENSCJAG00000087251 SOD3 (ENSCJAG00000013121) #12 CCDC149 (ENSCJAG00000013127) #13 LGI2 (ENSCJAG00000042679) #14 SEPSECS (ENSCJAG00000013178) #15 ANAPC4 (ENSCJAG00000013271) #18 ENSCJAG00000084062 SLC34A2 (ENSCJAG00000013366) #19 SEL1L3 (ENSCJAG00000021061) #20 SMIM20 (ENSCJAG00000081638) #21 ENSCJAG00000063163 ENSCJAG00000086596 RBPJ (ENSCJAG00000021033) #22 CCKAR (ENSCJAG00000083281) #23 TBC1D19 (ENSCJAG00000021004) #24 ENSCJAG00000067085 STIM2 (ENSCJAG00000020997) #25 PCDH7 (ENSCJAG00000020994) #28 ENSCJAG00000085279 ENSCJAG00000075802 ENSCJAG00000082827 ENSCJAG00000070181 ENSCJAG00000078636 ARAP2 (ENSCJAG00000020975) #31 DTHD1 (ENSCJAG00000020974) #32 ENSCJAG00000081599 NWD2 (ENSCJAG00000020972) #33 C4orf19 (ENSCJAG00000020970) #34 Cebidae_a ANCESTRAL SPECIES 34 ENSGT00940000158985.c ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00860000135660 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247.e #37 ENSGT00390000009693.p.b ENSGT00940000157949 ENSGT00900000143434 ENSGT00940000157456 Bolivian squirrel monkey MODERN SPECIES 65 ADGRA3 (ENSSBOG00000006417) #7 GBA3 (ENSSBOG00000032739) #9 PPARGC1A (ENSSBOG00000006423) #10 DHX15 (ENSSBOG00000022126) #11 ENSSBOG00000030054 SOD3 (ENSSBOG00000003134) #12 CCDC149 (ENSSBOG00000034478) #13 LGI2 (ENSSBOG00000033943) #14 SEPSECS (ENSSBOG00000023218) #15 PI4K2B (ENSSBOG00000030108) #16 ZCCHC4 (ENSSBOG00000020855) #17 ANAPC4 (ENSSBOG00000025712) #18 SLC34A2 (ENSSBOG00000023680) #19 SEL1L3 (ENSSBOG00000031484) #20 ENSSBOG00000022950 #21 RBPJ (ENSSBOG00000024531) #22 CCKAR (ENSSBOG00000028673) #23 TBC1D19 (ENSSBOG00000030316) #24 STIM2 (ENSSBOG00000030023) #25 PCDH7 (ENSSBOG00000011267) #28 ENSSBOG00000030688 ARAP2 (ENSSBOG00000023662) #31 DTHD1 (ENSSBOG00000034010) #32 NWD2 (ENSSBOG00000028289) #33 C4orf19 (ENSSBOG00000034925) #34 RELL1 (ENSSBOG00000022983) #35 PGM2 (ENSSBOG00000025985) #37 TBC1D1 (ENSSBOG00000035438) ENSSBOG00000033413 KLF3 (ENSSBOG00000005401) FAM114A1 (ENSSBOG00000025532) Capuchin MODERN SPECIES 333 SEL1L3 (ENSCCAG00000028947) #20 SMIM20 (ENSCCAG00000037080) #21 RBPJ (ENSCCAG00000032952) #22 CCKAR (ENSCCAG00000020355) #23 TBC1D19 (ENSCCAG00000021726) #24 STIM2 (ENSCCAG00000021839) #25 Tarsier DUPLICATION Tarsier MODERN SPECIES 7054 ENSTSYG00000027783 #22 MAGI1 (ENSTSYG00000007911) SLC25A26 (ENSTSYG00000032957) LRIG1 (ENSTSYG00000011778) KBTBD8 (ENSTSYG00000000350) ENSTSYG00000002336 Tarsier MODERN SPECIES 3892 RBPJ (ENSTSYG00000001894) #22 CCKAR (ENSTSYG00000028993) #23 Strepsirrhini ANCESTRAL SPECIES 46 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 Bushbaby MODERN SPECIES 184 ENSOGAG00000034271 GBA3 (ENSOGAG00000004907) #9 PPARGC1A (ENSOGAG00000014559) #10 ENSOGAG00000007593 #11 ENSOGAG00000029820 CCDC149 (ENSOGAG00000007602) #13 LGI2 (ENSOGAG00000025923) #14 SEPSECS (ENSOGAG00000008524) #15 ENSOGAG00000033259 ENSOGAG00000024400 PI4K2B (ENSOGAG00000029591) #16 ZCCHC4 (ENSOGAG00000002064) #17 ANAPC4 (ENSOGAG00000002068) #18 SLC34A2 (ENSOGAG00000006413) #19 SEL1L3 (ENSOGAG00000006417) #20 RBPJ (ENSOGAG00000007913) #22 CCKAR (ENSOGAG00000028711) #23 TBC1D19 (ENSOGAG00000008054) #24 STIM2 (ENSOGAG00000001870) #25 Lemuriformes ANCESTRAL SPECIES 62 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 Mouse lemur MODERN SPECIES 26 ADGRA3 (ENSMICG00000003022) #7 GBA3 (ENSMICG00000017466) #9 PPARGC1A (ENSMICG00000015390) #10 ENSMICG00000045337 DHX15 (ENSMICG00000015414) #11 CCDC149 (ENSMICG00000017475) #13 LGI2 (ENSMICG00000002206) #14 SEPSECS (ENSMICG00000028863) #15 PI4K2B (ENSMICG00000017176) #16 ZCCHC4 (ENSMICG00000017179) #17 ANAPC4 (ENSMICG00000017188) #18 ENSMICG00000033125 SLC34A2 (ENSMICG00000045359) #19 SEL1L3 (ENSMICG00000017216) #20 SMIM20 (ENSMICG00000017222) #21 RBPJ (ENSMICG00000016014) #22 CCKAR (ENSMICG00000016023) #23 TBC1D19 (ENSMICG00000015879) #24 STIM2 (ENSMICG00000005093) #25 ENSMICG00000032983 PCDH7 (ENSMICG00000028654) #28 ENSMICG00000029850 #29 ENSMICG00000034379 ENSMICG00000048142 ENSMICG00000030890 ARAP2 (ENSMICG00000016496) #31 DTHD1 (ENSMICG00000016515) #32 ENSMICG00000042181 ENSMICG00000046422 ENSMICG00000037614 NWD2 (ENSMICG00000015234) #33 Lemuriformes_a ANCESTRAL SPECIES 192 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 Greater bamboo lemur MODERN SPECIES 645 SEL1L3 (ENSPSMG00000004418) #20 RBPJ (ENSPSMG00000004547) #22 CCKAR (ENSPSMG00000004592) #23 TBC1D19 (ENSPSMG00000004674) #24 STIM2 (ENSPSMG00000004771) #25 Coquerels sifaka MODERN SPECIES 979 ADGRA3 (ENSPCOG00000026249) #7 ENSPCOG00000013452 #9 PPARGC1A (ENSPCOG00000022858) #10 ENSPCOG00000019130 DHX15 (ENSPCOG00000016858) #11 CCDC149 (ENSPCOG00000021677) #13 LGI2 (ENSPCOG00000019962) #14 SEPSECS (ENSPCOG00000027479) #15 PI4K2B (ENSPCOG00000025453) #16 ZCCHC4 (ENSPCOG00000019530) #17 ANAPC4 (ENSPCOG00000019322) #18 SLC34A2 (ENSPCOG00000001661) #19 SEL1L3 (ENSPCOG00000008204) #20 SMIM20 (ENSPCOG00000020751) #21 RBPJ (ENSPCOG00000014943) #22 CCKAR (ENSPCOG00000022459) #23 TBC1D19 (ENSPCOG00000027578) #24 ENSPCOG00000015580 #25 Euarchontoglires_A ANCESTRAL SPECIES 9 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT01040000242873 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00900000143434 ENSGT00940000157456 ENSGT00940000163662 ENSGT00940000162884 Tree shrew MODERN SPECIES 8110 RBPJ (ENSTBEG00000002676) #22 Glires ANCESTRAL SPECIES 8 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00900000143434 ENSGT00940000157456 ENSGT00940000163662 ENSGT00940000162884 Rodentia DUPLICATION Rodentia DUPLICATION Rodentia ANCESTRAL SPECIES ENSGT00390000005197.a.a.a #22 Rodentia_A ANCESTRAL SPECIES ENSGT00390000005197.a.a.a #22 Hystricomorpha ANCESTRAL SPECIES ENSGT00390000005197.a.a.a #22 Hystricomorpha_a ANCESTRAL SPECIES ENSGT00390000005197.a.a.a #22 Hystricomorpha_b ANCESTRAL SPECIES ENSGT00390000005197.a.a.a #22 Degu MODERN SPECIES 60 ENSODEG00000008774 PUM2 (ENSODEG00000007823) ENSODEG00000010362 RHOB (ENSODEG00000019841) HS1BP3 (ENSODEG00000010003) GDF7 (ENSODEG00000008847) ENSODEG00000008523 APOB (ENSODEG00000008337) ENSODEG00000019494 ENSODEG00000007994 ENSODEG00000019450 ENSODEG00000007428 KLHL29 (ENSODEG00000009928) ENSODEG00000008786 ENSODEG00000009834 ENSODEG00000008643 #22 ENSODEG00000007644 ENSODEG00000007455 ENSODEG00000008882 ENSODEG00000010244 SF3B6 (ENSODEG00000009547) ENSODEG00000007981 PFN4 (ENSODEG00000008303) ENSODEG00000007545 ENSODEG00000007584 NCOA1 (ENSODEG00000008181) PTRHD1 (ENSODEG00000007805) ADCY3 (ENSODEG00000007982) DNAJC27 (ENSODEG00000007488) EFR3B (ENSODEG00000007566) POMC (ENSODEG00000010910) Naked mole-rat female MODERN SPECIES 15 ENSHGLG00000010031 ENSHGLG00000040318 CCP110 (ENSHGLG00000018807) VPS35L (ENSHGLG00000018818) KNOP1 (ENSHGLG00000049260) IQCK (ENSHGLG00000014331) ENSHGLG00000049053 GPR139 (ENSHGLG00000034334) ENSHGLG00000050561 ENSHGLG00000009974 UMOD (ENSHGLG00000006685) PDILT (ENSHGLG00000008450) ACSM5 (ENSHGLG00000010732) ENSHGLG00000011441 ENSHGLG00000037112 ENSHGLG00000012971 #22 ENSHGLG00000006014 ENSHGLG00000049216 ENSHGLG00000007282 ENSHGLG00000049148 ENSHGLG00000007912 BFAR (ENSHGLG00000008907) PARN (ENSHGLG00000010886) MRTFB (ENSHGLG00000019009) ENSHGLG00000049641 ERCC4 (ENSHGLG00000016661) ENSHGLG00000017807 ENSHGLG00000035327 SHISA9 (ENSHGLG00000013207) CPPED1 (ENSHGLG00000011022) SNX29 (ENSHGLG00000012310) Rodentia_B ANCESTRAL SPECIES ENSGT00390000005197.a.a.a #22 Myomorpha ANCESTRAL SPECIES ENSGT00390000005197.a.a.a #22 Muroidea ANCESTRAL SPECIES ENSGT00390000005197.a.a.a #22 Upper Galilee mountains blind mole rat DUPLICATION Upper Galilee mountains blind mole rat MODERN SPECIES 1885 Apobec1 (ENSNGAG00000022607) Gdf3 (ENSNGAG00000018140) ENSNGAG00000011538 Slc2a3 (ENSNGAG00000012042) Foxj2 (ENSNGAG00000017980) C3ar1 (ENSNGAG00000014090) Necap1 (ENSNGAG00000015511) Clec4a1 (ENSNGAG00000023338) ENSNGAG00000023388 ENSNGAG00000009568 Clec4n (ENSNGAG00000022656) Clec4d (ENSNGAG00000003581) Clec4e (ENSNGAG00000010318) Cd163 (ENSNGAG00000004434) ENSNGAG00000023205 ENSNGAG00000023425 #22 Pex5 (ENSNGAG00000022852) Clstn3 (ENSNGAG00000022664) ENSNGAG00000018451 C1rl (ENSNGAG00000023384) ENSNGAG00000021958 ENSNGAG00000019975 Lpcat3 (ENSNGAG00000019456) Emg1 (ENSNGAG00000022592) ENSNGAG00000023489 Ptpn6 (ENSNGAG00000006668) Grcc10 (ENSNGAG00000015624) Atn1 (ENSNGAG00000003346) Eno2 (ENSNGAG00000019726) Lrrc23 (ENSNGAG00000023434) ENSNGAG00000019265 Upper Galilee mountains blind mole rat MODERN SPECIES 1012 ENSNGAG00000020113 ENSNGAG00000019133 #22 ENSNGAG00000001446 Pcdh10 (ENSNGAG00000014347) Pabpc4l (ENSNGAG00000001502) Pcdh18 (ENSNGAG00000002486) Slc7a11 (ENSNGAG00000012488) Muroidea_A ANCESTRAL SPECIES ENSGT00390000005197.a.a.a #22 Cricetidae ANCESTRAL SPECIES ENSGT00390000005197.a.a.a #22 Cricetidae_B ANCESTRAL SPECIES ENSGT00390000005197.a.a.a #22 Prairie vole MODERN SPECIES 147 ENSMOCG00000001414 ENSMOCG00000000686 ENSMOCG00000000319 #22 ENSMOCG00000000225 ENSMOCG00000022343 Tmem47 (ENSMOCG00000000092) Rodentia ANCESTRAL SPECIES ENSGT00390000005197.a.a.b #22 Rodentia_A ANCESTRAL SPECIES ENSGT00390000005197.a.a.b #22 Hystricomorpha ANCESTRAL SPECIES ENSGT00390000005197.a.a.b #22 Naked mole-rat female MODERN SPECIES 3 TRPM3 (ENSHGLG00000009801) ENSHGLG00000034795 ENSHGLG00000003100 TMEM2 (ENSHGLG00000013965) ABHD17B (ENSHGLG00000032723) ENSHGLG00000015860 ENSHGLG00000044859 ENSHGLG00000013674 GDA (ENSHGLG00000012950) ENSHGLG00000041124 ENSHGLG00000033487 TMC1 (ENSHGLG00000015834) ENSHGLG00000036208 ENSHGLG00000037149 ENSHGLG00000000865 ENSHGLG00000034386 #22 ENSHGLG00000001938 ALDH1A1 (ENSHGLG00000010105) ANXA1 (ENSHGLG00000000400) ENSHGLG00000047470 ENSHGLG00000031934 RORB (ENSHGLG00000000695) ENSHGLG00000040715 TRPM6 (ENSHGLG00000003851) C9orf40 (ENSHGLG00000000280) ENSHGLG00000050025 ENSHGLG00000033948 CARNMT1 (ENSHGLG00000000378) ENSHGLG00000002210 ENSHGLG00000044788 ENSHGLG00000049071 Rodentia ANCESTRAL SPECIES 13 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a.b #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00900000143434 ENSGT00940000157456 ENSGT00940000163662 ENSGT00940000162884 Rodentia_B ANCESTRAL SPECIES 19 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a.b #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000163662 ENSGT00940000162884 ENSGT00940000162201 Kangaroo rat MODERN SPECIES 327 Kcnip4 (ENSDORG00000015626) ENSDORG00000024508 Adgra3 (ENSDORG00000007520) #7 ENSDORG00000011391 #9 Ppargc1a (ENSDORG00000016276) #10 Dhx15 (ENSDORG00000013848) #11 Ccdc149 (ENSDORG00000005628) #13 Lgi2 (ENSDORG00000005632) #14 Sepsecs (ENSDORG00000012655) #15 Pi4k2b (ENSDORG00000000491) #16 ENSDORG00000012901 #17 ENSDORG00000025086 Slc34a2 (ENSDORG00000016105) #19 Sel1l3 (ENSDORG00000011773) #20 Smim20 (ENSDORG00000028531) #21 Rbpj (ENSDORG00000006352) #22 Cckar (ENSDORG00000006353) #23 Tbc1d19 (ENSDORG00000013790) #24 Stim2 (ENSDORG00000016610) #25 ENSDORG00000028755 #25 ENSDORG00000008260 Pcdh7 (ENSDORG00000029117) #28 ENSDORG00000028110 Arap2 (ENSDORG00000008160) #31 Dthd1 (ENSDORG00000001578) #32 Nwd2 (ENSDORG00000023758) #33 0610040J01Rik (ENSDORG00000011992) #34 Rell1 (ENSDORG00000008354) #35 Pgm2 (ENSDORG00000027647) #37 Tbc1d1 (ENSDORG00000010269) Klf3 (ENSDORG00000023213) Myomorpha ANCESTRAL SPECIES 19 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a.b #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000163662 ENSGT00940000162884 ENSGT00940000162201 Lesser Egyptian jerboa MODERN SPECIES 58 Adgra3 (ENSJJAG00000000786) #7 ENSJJAG00000023479 #9 ENSJJAG00000018377 #10 Dhx15 (ENSJJAG00000010364) #11 ENSJJAG00000010774 Sod3 (ENSJJAG00000019475) #12 Ccdc149 (ENSJJAG00000016740) #13 Lgi2 (ENSJJAG00000021018) #14 Sepsecs (ENSJJAG00000001251) #15 Pi4k2b (ENSJJAG00000021578) #16 Zcchc4 (ENSJJAG00000016627) #17 ENSJJAG00000023054 #18 Slc34a2 (ENSJJAG00000023515) #19 Sel1l3 (ENSJJAG00000018980) #20 Smim20 (ENSJJAG00000020734) #21 Rbpj (ENSJJAG00000024408) #22 Cckar (ENSJJAG00000009819) #23 Tbc1d19 (ENSJJAG00000015623) #24 Stim2 (ENSJJAG00000014478) #25 ENSJJAG00000011152 ENSJJAG00000011305 ENSJJAG00000024218 Pcdh7 (ENSJJAG00000021210) #28 Arap2 (ENSJJAG00000009614) #31 Dthd1 (ENSJJAG00000013536) #32 Nwd2 (ENSJJAG00000011338) #33 Rell1 (ENSJJAG00000015408) #35 Muroidea ANCESTRAL SPECIES 17 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a.b #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000163662 ENSGT00940000162884 ENSGT00940000162201 Upper Galilee mountains blind mole rat MODERN SPECIES 986 Adgra3 (ENSNGAG00000012199) #7 ENSNGAG00000014375 #9 Ppargc1a (ENSNGAG00000015090) #10 Dhx15 (ENSNGAG00000016196) #11 Sod3 (ENSNGAG00000017105) #12 Ccdc149 (ENSNGAG00000017784) #13 Lgi2 (ENSNGAG00000018556) #14 Sepsecs (ENSNGAG00000000721) #15 Pi4k2b (ENSNGAG00000001252) #16 Zcchc4 (ENSNGAG00000015745) #17 ENSNGAG00000018886 ENSNGAG00000019141 Slc34a2 (ENSNGAG00000000788) #19 Sel1l3 (ENSNGAG00000008965) #20 Smim20 (ENSNGAG00000009723) #21 Rbpj (ENSNGAG00000013338) #22 ENSNGAG00000021067 Cckar (ENSNGAG00000021342) #23 Tbc1d19 (ENSNGAG00000000629) #24 ENSNGAG00000007794 Stim2 (ENSNGAG00000016987) #25 Muroidea_A ANCESTRAL SPECIES 13 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a.b #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000163662 ENSGT00940000162884 ENSGT00940000162201 Murinae ANCESTRAL SPECIES 12 ENSGT00940000160460 #9 ENSGT01100000263543.a ENSGT01100000263511.b.a.b.a.a ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a.b #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000163662 ENSGT00940000162884 ENSGT00940000162201 Rat DUPLICATION Rat MODERN SPECIES 5 ENSRNOG00000067137 Ppargc1a (ENSRNOG00000004473) #10 Dhx15 (ENSRNOG00000003844) #11 Sod3 (ENSRNOG00000003869) #12 ENSRNOG00000064588 Ccdc149 (ENSRNOG00000024454) #13 Lgi2 (ENSRNOG00000066201) #14 Sepsecs (ENSRNOG00000049244) #15 Pi4k2b (ENSRNOG00000003924) #16 Zcchc4 (ENSRNOG00000029064) #17 Anapc4 (ENSRNOG00000004130) #18 Slc34a2 (ENSRNOG00000004626) #19 Sel1l3 (ENSRNOG00000004932) #20 AABR07015507.1 (ENSRNOG00000051190) LOC100361259 (ENSRNOG00000055911) Rbpj (ENSRNOG00000046327) #22 Cckar (ENSRNOG00000043124) #23 Tbc1d19 (ENSRNOG00000003003) #24 Stim2 (ENSRNOG00000002956) #25 ENSRNOG00000067114 Pcdh7 (ENSRNOG00000012367) #29 Pcdh7 (ENSRNOG00000063828) #28 ENSRNOG00000067336 AABR07015346.1 (ENSRNOG00000027791) ENSRNOG00000065159 LOC108348204 (ENSRNOG00000063351) ENSRNOG00000065472 Arap2 (ENSRNOG00000056826) #31 AABR07015180.1 (ENSRNOG00000026134) Nwd2 (ENSRNOG00000051837) #33 LOC498368 (ENSRNOG00000002191) #34 Rat MODERN SPECIES 15 Eloc (ENSRNOG00000031730) Ube2w (ENSRNOG00000062415) AABR07046707.1 (ENSRNOG00000042458) ENSRNOG00000069669 Rdh10 (ENSRNOG00000006681) LOC100912291 (ENSRNOG00000047310) LOC297756 (ENSRNOG00000007238) Sbspon (ENSRNOG00000007258) Terf1 (ENSRNOG00000007291) AC125757.1 (ENSRNOG00000028991) AABR07047316.1 (ENSRNOG00000062174) ENSRNOG00000067608 Trpa1 (ENSRNOG00000007354) Msc (ENSRNOG00000007540) Eya1 (ENSRNOG00000007590) Rbpjl2 (ENSRNOG00000007797) #22 Xkr9 (ENSRNOG00000040289) Lactb2 (ENSRNOG00000007829) Tram1 (ENSRNOG00000007892) Ncoa2 (ENSRNOG00000007975) AABR07046763.1 (ENSRNOG00000059973) Prdm14 (ENSRNOG00000021792) Slco5a1 (ENSRNOG00000008966) Sulf1 (ENSRNOG00000009037) RGD1564053 (ENSRNOG00000005375) Prex2 (ENSRNOG00000005391) Cpa6 (ENSRNOG00000005655) Arfgef1 (ENSRNOG00000005703) Cspp1 (ENSRNOG00000021718) Cops5 (ENSRNOG00000006499) Tcf24 (ENSRNOG00000052668) Mus ANCESTRAL SPECIES 14 ENSGT00940000159756 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a.b #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00530000063435.a.p ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000162884 ENSGT00940000162201 Shrew mouse MODERN SPECIES 4 Kcnip4 (MGP_PahariEiJ_G0016992) MGP_PahariEiJ_G0016993 Adgra3 (MGP_PahariEiJ_G0016994) #7 Ppargc1a (MGP_PahariEiJ_G0016995) #10 Dhx15 (MGP_PahariEiJ_G0016996) #11 Sod3 (MGP_PahariEiJ_G0016997) #12 Ccdc149 (MGP_PahariEiJ_G0016998) #13 Lgi2 (MGP_PahariEiJ_G0016999) #14 Sepsecs (MGP_PahariEiJ_G0017000) #15 Pi4k2b (MGP_PahariEiJ_G0017001) #16 Zcchc4 (MGP_PahariEiJ_G0017002) #17 Anapc4 (MGP_PahariEiJ_G0017003) #18 Slc34a2 (MGP_PahariEiJ_G0017004) #19 Sel1l3 (MGP_PahariEiJ_G0017005) #20 Smim20 (MGP_PahariEiJ_G0017006) #21 Rbpj (MGP_PahariEiJ_G0017007) #22 Cckar (MGP_PahariEiJ_G0017008) #23 Tbc1d19 (MGP_PahariEiJ_G0017009) #24 Stim2 (MGP_PahariEiJ_G0017010) #25 Pcdh7 (MGP_PahariEiJ_G0017011) #28 G6pd2 (MGP_PahariEiJ_G0017012) Arap2 (MGP_PahariEiJ_G0017013) #31 Dthd1 (MGP_PahariEiJ_G0017014) #32 Nwd2 (MGP_PahariEiJ_G0017015) #33 0610040J01Rik (MGP_PahariEiJ_G0017016) #34 Rell1 (MGP_PahariEiJ_G0017017) #35 Pgm2 (MGP_PahariEiJ_G0017018) #37 Tbc1d1 (MGP_PahariEiJ_G0017019) Klf3 (MGP_PahariEiJ_G0017020) Tlr1 (MGP_PahariEiJ_G0017021) Tlr6 (MGP_PahariEiJ_G0017022) Mus_A ANCESTRAL SPECIES 6 ENSGT00940000159756 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a.b #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00530000063435.a.p ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000162884 ENSGT00940000162201 Ryukyu mouse MODERN SPECIES 14 Kcnip4 (MGP_CAROLIEiJ_G0027210) MGP_CAROLIEiJ_G0027211 Adgra3 (MGP_CAROLIEiJ_G0027212) #7 Ppargc1a (MGP_CAROLIEiJ_G0027213) #10 Dhx15 (MGP_CAROLIEiJ_G0027214) #11 Sod3 (MGP_CAROLIEiJ_G0027215) #12 Ccdc149 (MGP_CAROLIEiJ_G0027216) #13 Lgi2 (MGP_CAROLIEiJ_G0027217) #14 Sepsecs (MGP_CAROLIEiJ_G0027218) #15 Pi4k2b (MGP_CAROLIEiJ_G0027219) #16 Zcchc4 (MGP_CAROLIEiJ_G0027220) #17 Anapc4 (MGP_CAROLIEiJ_G0027221) #18 Slc34a2 (MGP_CAROLIEiJ_G0027222) #19 Sel1l3 (MGP_CAROLIEiJ_G0027223) #20 Smim20 (MGP_CAROLIEiJ_G0027224) #21 MGP_CAROLIEiJ_G0027225 #22 Cckar (MGP_CAROLIEiJ_G0027226) #23 Tbc1d19 (MGP_CAROLIEiJ_G0027227) #24 Stim2 (MGP_CAROLIEiJ_G0027228) #25 Pcdh7 (MGP_CAROLIEiJ_G0027229) #28 G6pd2 (MGP_CAROLIEiJ_G0027230) Arap2 (MGP_CAROLIEiJ_G0027231) #31 Dthd1 (MGP_CAROLIEiJ_G0027232) #32 Nwd2 (MGP_CAROLIEiJ_G0027233) #33 0610040J01Rik (MGP_CAROLIEiJ_G0027234) #34 Rell1 (MGP_CAROLIEiJ_G0027235) #35 Pgm2 (MGP_CAROLIEiJ_G0027236) #37 MGP_CAROLIEiJ_G0027237 Klf3 (MGP_CAROLIEiJ_G0027238) Tlr1 (MGP_CAROLIEiJ_G0027239) Tlr6 (MGP_CAROLIEiJ_G0027240) Mus_B ANCESTRAL SPECIES 4 ENSGT00940000159756 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a.b #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00530000063435.a.p ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000162884 ENSGT00940000162201 Mouse MODERN SPECIES 14 5730480H06Rik (ENSMUSG00000029089) Kcnip4 (ENSMUSG00000029088) Adgra3 (ENSMUSG00000029090) #7 Ppargc1a (ENSMUSG00000029167) #10 Dhx15 (ENSMUSG00000029169) #11 Sod3 (ENSMUSG00000072941) #12 Ccdc149 (ENSMUSG00000045790) #13 Lgi2 (ENSMUSG00000039252) #14 Sepsecs (ENSMUSG00000029173) #15 Pi4k2b (ENSMUSG00000029186) #16 Zcchc4 (ENSMUSG00000029179) #17 Anapc4 (ENSMUSG00000029176) #18 Slc34a2 (ENSMUSG00000029188) #19 Sel1l3 (ENSMUSG00000029189) #20 Smim20 (ENSMUSG00000061461) #21 Rbpj (ENSMUSG00000039191) #22 Cckar (ENSMUSG00000029193) #23 Tbc1d19 (ENSMUSG00000039178) #24 Stim2 (ENSMUSG00000039156) #25 Pcdh7 (ENSMUSG00000029108) #28 G6pd2 (ENSMUSG00000089992) Arap2 (ENSMUSG00000037999) #31 Dthd1 (ENSMUSG00000090326) #32 Nwd2 (ENSMUSG00000090061) #33 0610040J01Rik (ENSMUSG00000060512) #34 Rell1 (ENSMUSG00000047881) #35 Pgm2 (ENSMUSG00000029171) #37 Tbc1d1 (ENSMUSG00000029174) Klf3 (ENSMUSG00000029178) Tlr1 (ENSMUSG00000044827) Tlr6 (ENSMUSG00000051498) Mus_C ANCESTRAL SPECIES 4 ENSGT00940000159756 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a.b #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00530000063435.a.p ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000162884 ENSGT00940000162201 Steppe mouse MODERN SPECIES 3046 Slc34a2 (ENSMSIG00000006630) #19 Sel1l3 (ENSMSIG00000006452) #20 Smim20 (ENSMSIG00000006400) #21 Rbpj (ENSMSIG00000006294) #22 Cckar (ENSMSIG00000006255) #23 Tbc1d19 (ENSMSIG00000006182) #24 Stim2 (ENSMSIG00000006059) #25 spretus MODERN SPECIES 14 5730480H06Rik (MGP_SPRETEiJ_G0028205) Kcnip4 (MGP_SPRETEiJ_G0028206) Adgra3 (MGP_SPRETEiJ_G0028207) #7 Ppargc1a (MGP_SPRETEiJ_G0028208) #10 Dhx15 (MGP_SPRETEiJ_G0028209) #11 Sod3 (MGP_SPRETEiJ_G0028210) #12 Ccdc149 (MGP_SPRETEiJ_G0028211) #13 Lgi2 (MGP_SPRETEiJ_G0028212) #14 Sepsecs (MGP_SPRETEiJ_G0028213) #15 Pi4k2b (MGP_SPRETEiJ_G0028214) #16 Zcchc4 (MGP_SPRETEiJ_G0028215) #17 Anapc4 (MGP_SPRETEiJ_G0028216) #18 Slc34a2 (MGP_SPRETEiJ_G0028217) #19 Sel1l3 (MGP_SPRETEiJ_G0028218) #20 Smim20 (MGP_SPRETEiJ_G0028219) #21 MGP_SPRETEiJ_G0028220 #22 Cckar (MGP_SPRETEiJ_G0028221) #23 Tbc1d19 (MGP_SPRETEiJ_G0028222) #24 Stim2 (MGP_SPRETEiJ_G0028223) #25 Pcdh7 (MGP_SPRETEiJ_G0028224) #28 G6pd2 (MGP_SPRETEiJ_G0028225) Arap2 (MGP_SPRETEiJ_G0028226) #31 Dthd1 (MGP_SPRETEiJ_G0028227) #32 Nwd2 (MGP_SPRETEiJ_G0028228) #33 0610040J01Rik (MGP_SPRETEiJ_G0028229) #34 Rell1 (MGP_SPRETEiJ_G0028230) #35 Pgm2 (MGP_SPRETEiJ_G0028231) #37 Tbc1d1 (MGP_SPRETEiJ_G0028232) Klf3 (MGP_SPRETEiJ_G0028233) Tlr6 (MGP_SPRETEiJ_G0028235) Fam114a1 (MGP_SPRETEiJ_G0028236) Cricetidae ANCESTRAL SPECIES 14 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a.b #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT01030000234945 #29 ENSGT00940000157221 #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000163662 ENSGT00940000162884 Cricetidae_B ANCESTRAL SPECIES 9 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a.b #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT01030000234945 #29 ENSGT00940000157221 #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000162884 ENSGT00390000010054.b Northern American deer mouse MODERN SPECIES 1 Adgra3 (ENSPEMG00000017979) #7 ENSPEMG00000009892 #9 Ppargc1a (ENSPEMG00000010892) #10 Dhx15 (ENSPEMG00000012226) #11 Sod3 (ENSPEMG00000028688) #12 Ccdc149 (ENSPEMG00000012229) #13 Lgi2 (ENSPEMG00000011026) #14 Sepsecs (ENSPEMG00000006742) #15 Pi4k2b (ENSPEMG00000007793) #16 Zcchc4 (ENSPEMG00000013522) #17 ENSPEMG00000029080 Anapc4 (ENSPEMG00000014070) #18 Slc34a2 (ENSPEMG00000007479) #19 Sel1l3 (ENSPEMG00000020373) #20 Smim20 (ENSPEMG00000030098) #21 Rbpj (ENSPEMG00000010386) #22 Cckar (ENSPEMG00000025192) #23 Tbc1d19 (ENSPEMG00000010326) #24 Stim2 (ENSPEMG00000013752) #25 ENSPEMG00000008427 Pcdh7 (ENSPEMG00000012079) #28 ENSPEMG00000025746 #29 ENSPEMG00000026158 ENSPEMG00000029628 ENSPEMG00000014650 ENSPEMG00000029590 Arap2 (ENSPEMG00000017210) #31 Dthd1 (ENSPEMG00000018338) #32 Nwd2 (ENSPEMG00000018695) #33 0610040J01Rik (ENSPEMG00000018765) #34 Rell1 (ENSPEMG00000019052) #35 Prairie vole MODERN SPECIES 349 ENSMOCG00000004401 ENSMOCG00000015030 Vwc2 (ENSMOCG00000022092) Zpbp (ENSMOCG00000005757) Spata48 (ENSMOCG00000014867) Ikzf1 (ENSMOCG00000003097) Fignl1 (ENSMOCG00000010841) Ddc (ENSMOCG00000014117) Grb10 (ENSMOCG00000013383) Cobl (ENSMOCG00000016899) ENSMOCG00000001123 ENSMOCG00000001110 Slc34a2 (ENSMOCG00000000230) #19 Sel1l3 (ENSMOCG00000013009) #20 Smim20 (ENSMOCG00000017669) #21 ENSMOCG00000018816 #22 Cckar (ENSMOCG00000004693) #23 Tbc1d19 (ENSMOCG00000013897) #24 Stim2 (ENSMOCG00000017892) #25 ENSMOCG00000000264 ENSMOCG00000004908 ENSMOCG00000017801 Pcdh7 (ENSMOCG00000019554) #28 ENSMOCG00000016594 ENSMOCG00000017532 Arap2 (ENSMOCG00000008948) #31 Dthd1 (ENSMOCG00000019885) #32 Nwd2 (ENSMOCG00000002726) #33 ENSMOCG00000004195 0610040J01Rik (ENSMOCG00000010145) #34 Rell1 (ENSMOCG00000013662) #35 Cricetinae ANCESTRAL SPECIES 9 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a.b #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000163662 ENSGT00940000162884 ENSGT00940000162201 Golden Hamster MODERN SPECIES 632 ENSMAUG00000007284 Adgra3 (ENSMAUG00000012066) #7 ENSMAUG00000007935 ENSMAUG00000006861 #9 Ppargc1a (ENSMAUG00000011811) #10 Dhx15 (ENSMAUG00000011535) #11 Ccdc149 (ENSMAUG00000001813) #13 Lgi2 (ENSMAUG00000020219) #14 Sepsecs (ENSMAUG00000002352) #15 Pi4k2b (ENSMAUG00000015492) #16 Zcchc4 (ENSMAUG00000017115) #17 Anapc4 (ENSMAUG00000015911) #18 Slc34a2 (ENSMAUG00000016072) #19 Sel1l3 (ENSMAUG00000009548) #20 Smim20 (ENSMAUG00000016115) #21 Rbpj (ENSMAUG00000020612) #22 Cckar (ENSMAUG00000020673) #23 Tbc1d19 (ENSMAUG00000018698) #24 Stim2 (ENSMAUG00000018372) #25 Chinese hamster chok1gshd MODERN SPECIES 44 ENSCGRG00001005713 Ppargc1a (ENSCGRG00001015534) #10 Dhx15 (ENSCGRG00001023527) #11 Sod3 (ENSCGRG00001009531) #12 Ccdc149 (ENSCGRG00001001092) #13 Lgi2 (ENSCGRG00001010617) #14 Sepsecs (ENSCGRG00001023389) #15 Pi4k2b (ENSCGRG00001005696) #16 Zcchc4 (ENSCGRG00001014205) #17 ENSCGRG00001016709 Anapc4 (ENSCGRG00001021562) #18 Slc34a2 (ENSCGRG00001019379) #19 Sel1l3 (ENSCGRG00001023792) #20 Smim20 (ENSCGRG00001010352) #21 ENSCGRG00001010832 Rbpj (ENSCGRG00001016640) #22 Cckar (ENSCGRG00001015331) #23 Tbc1d19 (ENSCGRG00001021066) #24 ENSCGRG00001004312 Stim2 (ENSCGRG00001012517) #25 ENSCGRG00001002941 ENSCGRG00001005160 ENSCGRG00001012415 Pcdh7 (ENSCGRG00001017637) #28 ENSCGRG00001018983 ENSCGRG00001009672 Arap2 (ENSCGRG00001019683) #31 Dthd1 (ENSCGRG00001007560) #32 ENSCGRG00001015981 ENSCGRG00001005701 Nwd2 (ENSCGRG00001014796) #33 Rodentia_A ANCESTRAL SPECIES 20 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a.b #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00900000143434 ENSGT00940000157456 ENSGT00940000163662 ENSGT00940000162884 Sciuridae ANCESTRAL SPECIES 19 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a.b #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00900000143434 ENSGT00940000157456 ENSGT00940000163662 ENSGT00940000162884 Eurasian red squirrel MODERN SPECIES 18 KCNIP4 (ENSSVLG00005015491) ADGRA3 (ENSSVLG00005015123) #7 GBA3 (ENSSVLG00005014999) #9 PPARGC1A (ENSSVLG00005014549) #10 ENSSVLG00005014421 #11 SOD3 (ENSSVLG00005014382) #12 CCDC149 (ENSSVLG00005013936) #13 LGI2 (ENSSVLG00005013643) #14 SEPSECS (ENSSVLG00005013560) #15 ENSSVLG00005013482 #16 ZCCHC4 (ENSSVLG00005013382) #17 ANAPC4 (ENSSVLG00005013305) #18 SLC34A2 (ENSSVLG00005013163) #19 SEL1L3 (ENSSVLG00005012722) #20 SMIM20 (ENSSVLG00005012667) #21 RBPJ (ENSSVLG00005012303) #22 CCKAR (ENSSVLG00005012173) #23 TBC1D19 (ENSSVLG00005011905) #24 ENSSVLG00005011823 STIM2 (ENSSVLG00005011778) #25 ENSSVLG00005011737 ENSSVLG00005011695 ENSSVLG00005011631 ENSSVLG00005011572 #29 PCDH7 (ENSSVLG00005011515) #28 ENSSVLG00005011423 ARAP2 (ENSSVLG00005010880) #31 DTHD1 (ENSSVLG00005010509) #32 ENSSVLG00005010441 #33 ENSSVLG00005010374 #33 C4orf19 (ENSSVLG00005010352) #34 Marmotini ANCESTRAL SPECIES 26 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800.e #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a.b #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00900000143434 ENSGT00940000157456 ENSGT00940000163662 ENSGT00940000162884 Alpin marmot MODERN SPECIES 9 KCNIP4 (ENSMMMG00000017078) ADGRA3 (ENSMMMG00000017146) #7 GBA3 (ENSMMMG00000017174) #9 PPARGC1A (ENSMMMG00000017190) #10 ENSMMMG00000017220 DHX15 (ENSMMMG00000017227) #11 CCDC149 (ENSMMMG00000017248) #13 LGI2 (ENSMMMG00000017262) #14 SEPSECS (ENSMMMG00000017270) #15 PI4K2B (ENSMMMG00000017289) #16 ZCCHC4 (ENSMMMG00000017301) #17 ANAPC4 (ENSMMMG00000017319) #18 SLC34A2 (ENSMMMG00000017344) #19 SEL1L3 (ENSMMMG00000017356) #20 SMIM20 (ENSMMMG00000017386) #21 RBPJ (ENSMMMG00000017407) #22 CCKAR (ENSMMMG00000017438) #23 STIM2 (ENSMMMG00000017470) #25 ENSMMMG00000017503 ENSMMMG00000017519 #28 ARAP2 (ENSMMMG00000017527) #31 DTHD1 (ENSMMMG00000017544) #32 NWD2 (ENSMMMG00000017559) #33 ENSMMMG00000017574 C4orf19 (ENSMMMG00000017577) #34 RELL1 (ENSMMMG00000017587) #35 PGM2 (ENSMMMG00000017606) #37 TBC1D1 (ENSMMMG00000017620) ENSMMMG00000017716 KLF3 (ENSMMMG00000017721) TLR10 (ENSMMMG00000017725) Marmotini_b ANCESTRAL SPECIES 33 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800.e #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b.g #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a.b #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 Arctic ground squirrel MODERN SPECIES 9 ADGRA3 (ENSUPAG00010018174) #7 GBA3 (ENSUPAG00010018197) #9 PPARGC1A (ENSUPAG00010018212) #10 ENSUPAG00010018232 DHX15 (ENSUPAG00010018237) #11 SOD3 (ENSUPAG00010018252) #12 CCDC149 (ENSUPAG00010018257) #13 LGI2 (ENSUPAG00010018269) #14 SEPSECS (ENSUPAG00010018289) #15 PI4K2B (ENSUPAG00010018304) #16 ZCCHC4 (ENSUPAG00010018312) #17 ANAPC4 (ENSUPAG00010018324) #18 ENSUPAG00010018366 #19 SEL1L3 (ENSUPAG00010018378) #20 SMIM20 (ENSUPAG00010018408) #21 RBPJ (ENSUPAG00010018415) #22 CCKAR (ENSUPAG00010018463) #23 TBC1D19 (ENSUPAG00010018475) #24 STIM2 (ENSUPAG00010018502) #25 Squirrel MODERN SPECIES 77 PACRGL (ENSSTOG00000014307) KCNIP4 (ENSSTOG00000014315) ADGRA3 (ENSSTOG00000008272) #7 GBA3 (ENSSTOG00000030967) #9 PPARGC1A (ENSSTOG00000012522) #10 ENSSTOG00000015000 #11 ENSSTOG00000025245 #13 LGI2 (ENSSTOG00000002210) #14 SEPSECS (ENSSTOG00000013399) #15 PI4K2B (ENSSTOG00000016146) #16 ZCCHC4 (ENSSTOG00000023603) #17 ANAPC4 (ENSSTOG00000016156) #18 SLC34A2 (ENSSTOG00000012971) #19 SEL1L3 (ENSSTOG00000010415) #20 SMIM20 (ENSSTOG00000004810) #21 RBPJ (ENSSTOG00000004547) #22 CCKAR (ENSSTOG00000028796) #23 TBC1D19 (ENSSTOG00000024301) #24 STIM2 (ENSSTOG00000014072) #25 Hystricomorpha ANCESTRAL SPECIES 26 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a.b #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000163662 ENSGT00940000162884 ENSGT00940000162201 Naked mole-rat female MODERN SPECIES 1 PPARGC1A (ENSHGLG00000007022) #10 DHX15 (ENSHGLG00000006630) #11 SOD3 (ENSHGLG00000047646) #12 CCDC149 (ENSHGLG00000045906) #13 LGI2 (ENSHGLG00000034196) #14 ENSHGLG00000031983 SEPSECS (ENSHGLG00000005236) #15 PI4K2B (ENSHGLG00000005194) #16 ZCCHC4 (ENSHGLG00000005154) #17 ENSHGLG00000039602 ANAPC4 (ENSHGLG00000004987) #18 SLC34A2 (ENSHGLG00000012163) #19 SEL1L3 (ENSHGLG00000011887) #20 ENSHGLG00000042802 ENSHGLG00000048407 RBPJ (ENSHGLG00000010901) #22 CCKAR (ENSHGLG00000041648) #23 TBC1D19 (ENSHGLG00000009465) #24 ENSHGLG00000009110 #25 ENSHGLG00000038509 ENSHGLG00000008412 ENSHGLG00000020704 ENSHGLG00000038050 ENSHGLG00000042856 #29 ENSHGLG00000007929 #28 ENSHGLG00000032804 ENSHGLG00000008642 ARAP2 (ENSHGLG00000001750) #31 DTHD1 (ENSHGLG00000006344) #32 ENSHGLG00000000242 ENSHGLG00000037767 Hystricomorpha_a ANCESTRAL SPECIES 23 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a.b #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000163662 ENSGT00940000162884 ENSGT00940000162201 Guinea pig MODERN SPECIES 50 ADGRA3 (ENSCPOG00000014179) #7 GBA3 (ENSCPOG00000024273) #9 PPARGC1A (ENSCPOG00000001518) #10 DHX15 (ENSCPOG00000006467) #11 SOD3 (ENSCPOG00000035072) #12 CCDC149 (ENSCPOG00000008895) #13 LGI2 (ENSCPOG00000024161) #14 SEPSECS (ENSCPOG00000035974) #15 PI4K2B (ENSCPOG00000015398) #16 ZCCHC4 (ENSCPOG00000011477) #17 ANAPC4 (ENSCPOG00000013122) #18 SLC34A2 (ENSCPOG00000024165) #19 SEL1L3 (ENSCPOG00000001037) #20 SMIM20 (ENSCPOG00000007684) #21 ENSCPOG00000040682 RBPJ (ENSCPOG00000007041) #22 CCKAR (ENSCPOG00000007046) #23 TBC1D19 (ENSCPOG00000003940) #24 STIM2 (ENSCPOG00000003408) #25 PCDH7 (ENSCPOG00000009659) #28 ARAP2 (ENSCPOG00000003037) #31 DTHD1 (ENSCPOG00000012919) #32 Hystricomorpha_b ANCESTRAL SPECIES 37 ENSGT00940000159756 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a.b #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000163662 ENSGT00940000162884 ENSGT00940000162201 Degu MODERN SPECIES 47 KCNIP4 (ENSODEG00000009132) ADGRA3 (ENSODEG00000008912) #7 GBA3 (ENSODEG00000007983) #9 ENSODEG00000008409 #10 ENSODEG00000008891 #11 ENSODEG00000008421 #13 LGI2 (ENSODEG00000009206) #14 SEPSECS (ENSODEG00000010607) #15 PI4K2B (ENSODEG00000008999) #16 ENSODEG00000007449 #17 ENSODEG00000006972 ENSODEG00000019525 SLC34A2 (ENSODEG00000010839) #19 SEL1L3 (ENSODEG00000008196) #20 ENSODEG00000007321 #21 ENSODEG00000007277 #22 CCKAR (ENSODEG00000007359) #23 TBC1D19 (ENSODEG00000007019) #24 ENSODEG00000008773 #25 ENSODEG00000006518 #25 ENSODEG00000019413 ENSODEG00000006666 ENSODEG00000007600 PCDH7 (ENSODEG00000007387) #28 ENSODEG00000006993 ENSODEG00000019660 ARAP2 (ENSODEG00000006699) #31 DTHD1 (ENSODEG00000007001) #32 Long-tailed chinchilla MODERN SPECIES 150 SEPSECS (ENSCLAG00000001790) #15 PI4K2B (ENSCLAG00000001759) #16 ZCCHC4 (ENSCLAG00000003884) #17 ANAPC4 (ENSCLAG00000003544) #18 ENSCLAG00000002958 SLC34A2 (ENSCLAG00000002636) #19 SEL1L3 (ENSCLAG00000002362) #20 SMIM20 (ENSCLAG00000002089) #21 RBPJ (ENSCLAG00000002065) #22 CCKAR (ENSCLAG00000001729) #23 TBC1D19 (ENSCLAG00000001699) #24 STIM2 (ENSCLAG00000002849) #25 PCDH7 (ENSCLAG00000002605) #28 ARAP2 (ENSCLAG00000012467) #31 DTHD1 (ENSCLAG00000011952) #32 NWD2 (ENSCLAG00000010818) #33 C4orf19 (ENSCLAG00000010706) #34 RELL1 (ENSCLAG00000010401) #35 PGM2 (ENSCLAG00000010266) #37 TBC1D1 (ENSCLAG00000002236) KLF3 (ENSCLAG00000004459) TLR10 (ENSCLAG00000004336) TLR1 (ENSCLAG00000017579) TLR6 (ENSCLAG00000017630) Lagomorpha ANCESTRAL SPECIES 3 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT01030000234945 #29 ENSGT00940000157221 #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000163662 ENSGT00940000162884 Pika MODERN SPECIES 2489 SLC34A2 (ENSOPRG00000001382) #19 SEL1L3 (ENSOPRG00000001401) #20 SMIM20 (ENSOPRG00000001454) #21 RBPJ (ENSOPRG00000001466) #22 CCKAR (ENSOPRG00000001491) #23 TBC1D19 (ENSOPRG00000001504) #24 Rabbit DUPLICATION Rabbit MODERN SPECIES 11 ENSOCUG00000000919 #7 GBA3 (ENSOCUG00000005568) #9 PPARGC1A (ENSOCUG00000014668) #10 DHX15 (ENSOCUG00000003026) #11 ENSOCUG00000019163 ENSOCUG00000007460 #12 CCDC149 (ENSOCUG00000007463) #13 LGI2 (ENSOCUG00000004764) #14 SEPSECS (ENSOCUG00000008262) #15 PI4K2B (ENSOCUG00000015972) #16 ZCCHC4 (ENSOCUG00000015990) #17 ANAPC4 (ENSOCUG00000016004) #18 SLC34A2 (ENSOCUG00000002944) #19 SEL1L3 (ENSOCUG00000017195) #20 SMIM20 (ENSOCUG00000034394) #21 RBPJ (ENSOCUG00000013449) #22 CCKAR (ENSOCUG00000013457) #23 TBC1D19 (ENSOCUG00000013465) #24 STIM2 (ENSOCUG00000014185) #25 ENSOCUG00000038061 ENSOCUG00000026856 ENSOCUG00000039608 ENSOCUG00000030289 ##8 ENSOCUG00000035672 #29 PCDH7 (ENSOCUG00000000290) #28 ENSOCUG00000023563 ENSOCUG00000010124 ENSOCUG00000036228 ARAP2 (ENSOCUG00000015669) #31 DTHD1 (ENSOCUG00000001098) #32 NWD2 (ENSOCUG00000012238) #33 Rabbit MODERN SPECIES 11 ENSOCUG00000022570 QPCT (ENSOCUG00000007416) PRKD3 (ENSOCUG00000007411) ENSOCUG00000007239 CEBPZ (ENSOCUG00000007230) ENSOCUG00000029893 SULT6B1 (ENSOCUG00000007229) EIF2AK2 (ENSOCUG00000007223) GPATCH11 (ENSOCUG00000007217) HEATR5B (ENSOCUG00000007205) STRN (ENSOCUG00000007258) VIT (ENSOCUG00000007249) FEZ2 (ENSOCUG00000014879) CRIM1 (ENSOCUG00000001595) ENSOCUG00000032042 ENSOCUG00000038657 #22 FAM98A (ENSOCUG00000015457) RASGRP3 (ENSOCUG00000015439) ENSOCUG00000036940 LTBP1 (ENSOCUG00000009598) TTC27 (ENSOCUG00000009586) BIRC6 (ENSOCUG00000006600) YIPF4 (ENSOCUG00000007591) SLC30A6 (ENSOCUG00000005403) ENSOCUG00000038042 SPAST (ENSOCUG00000010252) ENSOCUG00000017877 ENSOCUG00000005878 ENSOCUG00000036681 SRD5A2 (ENSOCUG00000001236) XDH (ENSOCUG00000001230) Laurasiatheria ANCESTRAL SPECIES 11 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00860000135660 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000165320 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT01030000235076 ENSGT00940000169973 ENSGT00940000157949 Eulipotyphla ANCESTRAL SPECIES 2118 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 Hedgehog MODERN SPECIES 6316 RBPJ (ENSEEUG00000009686) #22 CCKAR (ENSEEUG00000009776) #23 Common shrew MODERN SPECIES 4916 RBPJ (ENSSARG00000001169) #22 Laurasiatheria_a ANCESTRAL SPECIES 8 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00860000135660 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000165320 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT01030000235076 ENSGT00940000169973 ENSGT00940000157949 Laurasiatheria_b ANCESTRAL SPECIES 8 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00860000135660 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000165320 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT01030000235076 ENSGT00940000169973 ENSGT00940000157949 Carnivora ANCESTRAL SPECIES 5 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00970000193677 ENSGT00950000182895.a.a.a.a.a.a.b.a.a.c.b ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00860000135660 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT01030000235076 ENSGT00940000169973 Felidae ANCESTRAL SPECIES 4 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00970000193677 ENSGT00950000182895.a.a.a.a.a.a.b.a.a.c.b ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00860000135660 ENSGT00390000016760.c.b ENSGT00390000007888.c.b.a ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 Cat MODERN SPECIES 235 ADGRA3 (ENSFCAG00000027302) #7 GBA3 (ENSFCAG00000031717) #9 PPARGC1A (ENSFCAG00000000043) #10 ENSFCAG00000040987 DHX15 (ENSFCAG00000009234) #11 SOD3 (ENSFCAG00000045310) #12 CCDC149 (ENSFCAG00000015383) #13 LGI2 (ENSFCAG00000032361) #14 SEPSECS (ENSFCAG00000023094) #15 PI4K2B (ENSFCAG00000025109) #16 ZCCHC4 (ENSFCAG00000023396) #17 ANAPC4 (ENSFCAG00000042946) #18 SLC34A2 (ENSFCAG00000029965) #19 SEL1L3 (ENSFCAG00000013720) #20 SMIM20 (ENSFCAG00000046718) #21 RBPJ (ENSFCAG00000030363) #22 CCKAR (ENSFCAG00000007718) #23 CAR1 (ENSFCAG00000049200) ENSFCAG00000028607 TBC1D19 (ENSFCAG00000029340) #24 STIM2 (ENSFCAG00000025940) #25 PCDH7 (ENSFCAG00000014975) #28 ENSFCAG00000032725 ENSFCAG00000052913 ENSFCAG00000048265 ENSFCAG00000033885 ARAP2 (ENSFCAG00000004726) #31 DTHD1 (ENSFCAG00000014534) #32 NWD2 (ENSFCAG00000031252) #33 ENSFCAG00000050369 ##8 CB1H4orf19 (ENSFCAG00000000031) #34 Panthera ANCESTRAL SPECIES 5 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00970000193677 ENSGT00950000182895.a.a.a.a.a.a.b.a.a.c.b ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00860000135660 ENSGT00390000016760.c.b ENSGT00390000007888.c.b.a ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 Tiger MODERN SPECIES 349 DHX15 (ENSPTIG00000010037) #11 CCDC149 (ENSPTIG00000009661) #13 LGI2 (ENSPTIG00000009350) #14 SEPSECS (ENSPTIG00000009229) #15 PI4K2B (ENSPTIG00000008971) #16 ZCCHC4 (ENSPTIG00000008749) #17 ANAPC4 (ENSPTIG00000008519) #18 SLC34A2 (ENSPTIG00000008160) #19 SEL1L3 (ENSPTIG00000007261) #20 ENSPTIG00000007083 RBPJ (ENSPTIG00000006126) #22 CCKAR (ENSPTIG00000005490) #23 ENSPTIG00000005280 TBC1D19 (ENSPTIG00000002885) #24 STIM2 (ENSPTIG00000001265) #25 Panthera_a ANCESTRAL SPECIES 2 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00970000193677 ENSGT00950000182895.a.a.a.a.a.a.b.a.a.c.b ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00860000135660 ENSGT00390000016760.c.b ENSGT00390000007888.c.b.a ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 leopard MODERN SPECIES 25 GBA3 (ENSPPRG00000000195) #9 PPARGC1A (ENSPPRG00000001711) #10 ENSPPRG00000020851 DHX15 (ENSPPRG00000002164) #11 SOD3 (ENSPPRG00000020880) #12 CCDC149 (ENSPPRG00000005074) #13 LGI2 (ENSPPRG00000005473) #14 SEPSECS (ENSPPRG00000005618) #15 PI4K2B (ENSPPRG00000006151) #16 ZCCHC4 (ENSPPRG00000006329) #17 ANAPC4 (ENSPPRG00000006664) #18 SLC34A2 (ENSPPRG00000008628) #19 ENSPPRG00000009004 SEL1L3 (ENSPPRG00000018369) #20 SMIM20 (ENSPPRG00000018812) #21 RBPJ (ENSPPRG00000024386) #22 CCKAR (ENSPPRG00000024018) #23 ENSPPRG00000023897 TBC1D19 (ENSPPRG00000023259) #24 STIM2 (ENSPPRG00000000768) #25 PCDH7 (ENSPPRG00000001154) #28 ENSPPRG00000021125 lion MODERN SPECIES 4 ADGRA3 (ENSPLOG00000015872) #7 GBA3 (ENSPLOG00000015752) #9 PPARGC1A (ENSPLOG00000015341) #10 ENSPLOG00000015280 DHX15 (ENSPLOG00000015238) #11 SOD3 (ENSPLOG00000015212) #12 CCDC149 (ENSPLOG00000014724) #13 LGI2 (ENSPLOG00000014551) #14 SEPSECS (ENSPLOG00000014441) #15 PI4K2B (ENSPLOG00000014324) #16 ZCCHC4 (ENSPLOG00000014263) #17 ANAPC4 (ENSPLOG00000014198) #18 SLC34A2 (ENSPLOG00000013975) #19 SEL1L3 (ENSPLOG00000013599) #20 ENSPLOG00000013526 #21 RBPJ (ENSPLOG00000013224) #22 CCKAR (ENSPLOG00000013057) #23 ENSPLOG00000013017 ENSPLOG00000012957 TBC1D19 (ENSPLOG00000012764) #24 STIM2 (ENSPLOG00000012668) #25 PCDH7 (ENSPLOG00000012591) #28 ENSPLOG00000012507 ENSPLOG00000012476 ENSPLOG00000012458 ENSPLOG00000012421 ENSPLOG00000012384 ARAP2 (ENSPLOG00000012184) #31 DTHD1 (ENSPLOG00000011795) #32 ENSPLOG00000011702 CSN2 (ENSPLOG00000011567) Caniformia ANCESTRAL SPECIES 7 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00970000193677 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00860000135660 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT01030000235076 ENSGT00940000169973 ENSGT00940000157949 Caniformia_b ANCESTRAL SPECIES 5 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00970000193677 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00860000135660 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT01030000235076 ENSGT00940000169973 ENSGT00940000157949 Mustelinae ANCESTRAL SPECIES 112 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00970000193677 ENSGT00390000000214.a.b #25 Ferret MODERN SPECIES 252 ADGRA3 (ENSMPUG00000016741) #7 GBA3 (ENSMPUG00000016738) #9 PPARGC1A (ENSMPUG00000016736) #10 DHX15 (ENSMPUG00000016735) #11 SOD3 (ENSMPUG00000020131) #12 CCDC149 (ENSMPUG00000016734) #13 LGI2 (ENSMPUG00000016733) #14 SEPSECS (ENSMPUG00000016732) #15 PI4K2B (ENSMPUG00000016729) #16 ZCCHC4 (ENSMPUG00000016727) #17 ANAPC4 (ENSMPUG00000016724) #18 SLC34A2 (ENSMPUG00000016722) #19 SEL1L3 (ENSMPUG00000016719) #20 ENSMPUG00000016717 ENSMPUG00000016716 RBPJ (ENSMPUG00000016715) #22 CCKAR (ENSMPUG00000016713) #23 TBC1D19 (ENSMPUG00000016711) #24 STIM2 (ENSMPUG00000016709) #25 American mink MODERN SPECIES 32 ADGRA3 (ENSNVIG00000012904) #7 ENSNVIG00000012944 #9 PPARGC1A (ENSNVIG00000012965) #10 DHX15 (ENSNVIG00000013069) #11 SOD3 (ENSNVIG00000013084) #12 CCDC149 (ENSNVIG00000013098) #13 LGI2 (ENSNVIG00000013203) #14 SEPSECS (ENSNVIG00000013227) #15 ENSNVIG00000013245 PI4K2B (ENSNVIG00000013261) #16 ZCCHC4 (ENSNVIG00000013287) #17 ANAPC4 (ENSNVIG00000013320) #18 SLC34A2 (ENSNVIG00000013390) #19 SEL1L3 (ENSNVIG00000013431) #20 SMIM20 (ENSNVIG00000013500) #21 RBPJ (ENSNVIG00000013517) #22 ENSNVIG00000013579 CCKAR (ENSNVIG00000013587) #23 TBC19 (ENSNVIG00000013610) #24 ENSNVIG00000013701 STIM2 (ENSNVIG00000013721) #25 Ursidae ANCESTRAL SPECIES 29 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00950000182895.a.a.a.a.a.a.b.a.a.c.b ENSGT00390000015965 #24 ENSGT00970000193677 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00860000135660 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 Giant Panda MODERN SPECIES 2 KCNIP4 (ENSAMEG00000006445) ADGRA3 (ENSAMEG00000006461) #7 GBA3 (ENSAMEG00000006494) #9 PPARGC1A (ENSAMEG00000010421) #10 DHX15 (ENSAMEG00000010482) #11 SOD3 (ENSAMEG00000023550) #12 CCDC149 (ENSAMEG00000008440) #13 LGI2 (ENSAMEG00000008417) #14 SEPSECS (ENSAMEG00000014700) #15 PI4K2B (ENSAMEG00000014735) #16 ZCCHC4 (ENSAMEG00000027841) #17 ANAPC4 (ENSAMEG00000018114) #18 SLC34A2 (ENSAMEG00000018105) #19 SEL1L3 (ENSAMEG00000018094) #20 SMIM20 (ENSAMEG00000018092) #21 RBPJ (ENSAMEG00000018082) #22 CCKAR (ENSAMEG00000014732) #23 CAR1 (ENSAMEG00000031321) ENSAMEG00000023854 TBC1D19 (ENSAMEG00000014677) #24 STIM2 (ENSAMEG00000014649) #25 PCDH7 (ENSAMEG00000026428) #28 ENSAMEG00000029477 ARAP2 (ENSAMEG00000005492) #31 DTHD1 (ENSAMEG00000005528) #32 NWD2 (ENSAMEG00000024908) #33 C4orf19 (ENSAMEG00000011277) #34 RELL1 (ENSAMEG00000011264) #35 PGM2 (ENSAMEG00000011214) #37 TBC1D1 (ENSAMEG00000011195) KLF3 (ENSAMEG00000010056) Ursus ANCESTRAL SPECIES 180 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00970000193677 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00860000135660 American black bear MODERN SPECIES 6118 RBPJ (ENSUAMG00000016450) #22 CCKAR (ENSUAMG00000016444) #23 Polar bear MODERN SPECIES 128 KCNIP4 (ENSUMAG00000003497) ADGRA3 (ENSUMAG00000003527) #7 GBA3 (ENSUMAG00000003537) #9 PPARGC1A (ENSUMAG00000003557) #10 DHX15 (ENSUMAG00000003647) #11 ENSUMAG00000003656 CCDC149 (ENSUMAG00000003673) #13 LGI2 (ENSUMAG00000003678) #14 SEPSECS (ENSUMAG00000003690) #15 PI4K2B (ENSUMAG00000003697) #16 ZCCHC4 (ENSUMAG00000003758) #17 ANAPC4 (ENSUMAG00000003767) #18 SLC34A2 (ENSUMAG00000003792) #19 SEL1L3 (ENSUMAG00000003892) #20 SMIM20 (ENSUMAG00000004164) #21 RBPJ (ENSUMAG00000004171) #22 CCKAR (ENSUMAG00000004192) #23 ENSUMAG00000004204 TBC1D19 (ENSUMAG00000004209) #24 ENSUMAG00000004223 STIM2 (ENSUMAG00000004243) #25 ENSUMAG00000004345 ENSUMAG00000004356 #28 ENSUMAG00000004367 #28 ENSUMAG00000004368 DSEL (ENSUMAG00000004377) TMX3 (ENSUMAG00000004385) CCDC102B (ENSUMAG00000004396) DOK6 (ENSUMAG00000004418) CD226 (ENSUMAG00000004424) ENSUMAG00000004435 Canidae ANCESTRAL SPECIES 21 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00970000193677 ENSGT00390000000214.a.b #25 ENSGT01030000234945 #29 ENSGT00940000157221 #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000163662 Red fox MODERN SPECIES 1 ADGRA3 (ENSVVUG00000013329) #7 GBA3 (ENSVVUG00000013354) #9 ENSVVUG00000013361 PPARGC1A (ENSVVUG00000013365) #10 ENSVVUG00000013388 DHX15 (ENSVVUG00000013395) #11 CCDC149 (ENSVVUG00000013407) #13 LGI2 (ENSVVUG00000013458) #14 SEPSECS (ENSVVUG00000013476) #15 PI4K2B (ENSVVUG00000013490) #16 ZCCHC4 (ENSVVUG00000013506) #17 ANAPC4 (ENSVVUG00000013531) #18 SLC34A2 (ENSVVUG00000013552) #19 SEL1L3 (ENSVVUG00000013804) #20 SMIM20 (ENSVVUG00000013812) #21 RBPJ (ENSVVUG00000013837) #22 CCKAR (ENSVVUG00000013858) #23 TBC1D19 (ENSVVUG00000013875) #24 ENSVVUG00000013949 STIM2 (ENSVVUG00000013958) #25 ENSVVUG00000014058 PCDH7 (ENSVVUG00000014104) #28 ENSVVUG00000014123 #28 ENSVVUG00000014202 ENSVVUG00000014241 ENSVVUG00000014337 ARAP2 (ENSVVUG00000014348) #31 DTHD1 (ENSVVUG00000014412) #32 NWD2 (ENSVVUG00000014429) #33 ENSVVUG00000014438 RELL1 (ENSVVUG00000014443) #35 Canis_lupus ANCESTRAL SPECIES 23 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556.i #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00970000193677 ENSGT00390000000214.a.b #25 ENSGT01030000234945 #29 ENSGT00940000157221 #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000163662 Dingo MODERN SPECIES 138 GBA3 (ENSCAFG00020027241) #9 PPARGC1A (ENSCAFG00020027242) #10 ENSCAFG00020027244 DHX15 (ENSCAFG00020027245) #11 SOD3 (ENSCAFG00020027246) #12 CCDC149 (ENSCAFG00020027247) #13 LGI2 (ENSCAFG00020027248) #14 SEPSECS (ENSCAFG00020027249) #15 PI4K2B (ENSCAFG00020027250) #16 ENSCAFG00020027252 #17 ENSCAFG00020027253 #17 ANAPC4 (ENSCAFG00020027256) #18 SLC34A2 (ENSCAFG00020027270) #19 SEL1L3 (ENSCAFG00020027291) #20 ENSCAFG00020027299 #21 RBPJ (ENSCAFG00020027303) #22 CCKAR (ENSCAFG00020027326) #23 TBC1D19 (ENSCAFG00020027330) #24 ENSCAFG00020027342 STIM2 (ENSCAFG00020027345) #25 ENSCAFG00020027346 ENSCAFG00020027359 PCDH7 (ENSCAFG00020027362) #28 ENSCAFG00020027369 ARAP2 (ENSCAFG00020027371) #31 DTHD1 (ENSCAFG00020027385) #32 NWD2 (ENSCAFG00020027393) #33 RELL1 (ENSCAFG00020027397) #35 PGM2 (ENSCAFG00020027401) #37 TBC1D1 (ENSCAFG00020027410) KLF3 (ENSCAFG00020027419) Dog MODERN SPECIES 22 ADGRA3 (ENSCAFG00845008840) #7 GBA3 (ENSCAFG00845008730) #9 PPARGC1A (ENSCAFG00845008311) #10 DHX15 (ENSCAFG00845007821) #11 SOD3 (ENSCAFG00845007800) #12 CCDC149 (ENSCAFG00845007671) #13 LGI2 (ENSCAFG00845007610) #14 SEPSECS (ENSCAFG00845007550) #15 PI4K2B (ENSCAFG00845007474) #16 ZCCHC4 (ENSCAFG00845007308) #17 ANAPC4 (ENSCAFG00845007014) #18 SLC34A2 (ENSCAFG00845006845) #19 SEL1L3 (ENSCAFG00845006276) #20 SMIM20 (ENSCAFG00845006127) #21 ENSCAFG00845006105 RBPJ (ENSCAFG00845005977) #22 CCKAR (ENSCAFG00845005880) #23 CAR1 (ENSCAFG00845005825) TBC1D19 (ENSCAFG00845005743) #24 STIM2 (ENSCAFG00845005670) #25 ENSCAFG00845005634 ENSCAFG00845005572 ENSCAFG00845005559 #29 PCDH7 (ENSCAFG00845005515) #28 ENSCAFG00845005487 ARAP2 (ENSCAFG00845005336) #31 DTHD1 (ENSCAFG00845005244) #32 ENSCAFG00845005226 NWD2 (ENSCAFG00845005206) #33 ENSCAFG00845005184 #34 RELL1 (ENSCAFG00845005126) #35 Laurasiatheria_c ANCESTRAL SPECIES 8 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000165320 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000163662 ENSGT00940000162884 Chiroptera ANCESTRAL SPECIES 9 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000163662 ENSGT00940000162884 ENSGT00940000162201 Megabat MODERN SPECIES 2083 RBPJ (ENSPVAG00000014199) #22 CCKAR (ENSPVAG00000014200) #23 TBC1D19 (ENSPVAG00000014201) #24 STIM2 (ENSPVAG00000014202) #25 Microchiroptera ANCESTRAL SPECIES 10 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000163662 ENSGT00940000162884 ENSGT00940000162201 Microbat MODERN SPECIES 1049 GBA3 (ENSMLUG00000009213) #9 ENSMLUG00000027157 ENSMLUG00000027956 PPARGC1A (ENSMLUG00000016307) #10 DHX15 (ENSMLUG00000001617) #11 SOD3 (ENSMLUG00000014742) #12 CCDC149 (ENSMLUG00000014745) #13 LGI2 (ENSMLUG00000005887) #14 SEPSECS (ENSMLUG00000005883) #15 PI4K2B (ENSMLUG00000001044) #16 ZCCHC4 (ENSMLUG00000004225) #17 ANAPC4 (ENSMLUG00000004233) #18 ENSMLUG00000000694 #19 SEL1L3 (ENSMLUG00000000702) #20 SMIM20 (ENSMLUG00000000713) #21 RBPJ (ENSMLUG00000017187) #22 CCKAR (ENSMLUG00000017191) #23 ENSMLUG00000023226 TBC1D19 (ENSMLUG00000017193) #24 STIM2 (ENSMLUG00000017200) #25 Greater horseshoe bat MODERN SPECIES 23 PPARGC1A (ENSRFEG00010001741) #10 ENSRFEG00010001699 DHX15 (ENSRFEG00010001673) #11 SOD3 (ENSRFEG00010001657) #12 CCDC149 (ENSRFEG00010001512) #13 LGI2 (ENSRFEG00010001447) #14 SEPSECS (ENSRFEG00010001416) #15 PI4K2B (ENSRFEG00010001371) #16 ZCCHC4 (ENSRFEG00010001312) #17 ANAPC4 (ENSRFEG00010001248) #18 SLC34A2 (ENSRFEG00010001179) #19 SEL1L3 (ENSRFEG00010001115) #20 SMIM20 (ENSRFEG00010001089) #21 ENSRFEG00010001077 ENSRFEG00010001068 RBPJ (ENSRFEG00010000987) #22 CCKAR (ENSRFEG00010000933) #23 TBC1D19 (ENSRFEG00010000865) #24 STIM2 (ENSRFEG00010000812) #25 ENSRFEG00010000792 PCDH7 (ENSRFEG00010000761) #28 ENSRFEG00010000734 ENSRFEG00010000675 #31 DTHD1 (ENSRFEG00010000588) #32 NWD2 (ENSRFEG00010000529) #33 C4orf19 (ENSRFEG00010000507) #34 RELL1 (ENSRFEG00010000481) #35 PGM2 (ENSRFEG00010000444) #37 TBC1D1 (ENSRFEG00010000328) KLF3 (ENSRFEG00010000276) TLR10 (ENSRFEG00010000243) Equus ANCESTRAL SPECIES 12 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000165320 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000163662 ENSGT00940000162884 Horse MODERN SPECIES 22 GBA3 (ENSECAG00000014346) #9 PPARGC1A (ENSECAG00000009164) #10 DHX15 (ENSECAG00000023224) #11 ENSECAG00000045825 SOD3 (ENSECAG00000035543) #12 CCDC149 (ENSECAG00000022451) #13 LGI2 (ENSECAG00000016152) #14 SEPSECS (ENSECAG00000009932) #15 PI4K2B (ENSECAG00000008251) #16 ZCCHC4 (ENSECAG00000007352) #17 ANAPC4 (ENSECAG00000017692) #18 SLC34A2 (ENSECAG00000013315) #19 SEL1L3 (ENSECAG00000000638) #20 SMIM20 (ENSECAG00000041550) #21 ENSECAG00000002201 RBPJ (ENSECAG00000019257) #22 CCKAR (ENSECAG00000017266) #23 TBC1D19 (ENSECAG00000011680) #24 STIM2 (ENSECAG00000009481) #25 ENSECAG00000054073 ENSECAG00000027755 PCDH7 (ENSECAG00000000599) #28 ARAP2 (ENSECAG00000018069) #31 DTHD1 (ENSECAG00000017513) #32 ENSECAG00000050605 NWD2 (ENSECAG00000017312) #33 C3H4orf19 (ENSECAG00000017301) #34 RELL1 (ENSECAG00000016126) #35 PGM2 (ENSECAG00000009090) #37 TBC1D1 (ENSECAG00000022162) KLF3 (ENSECAG00000021855) Donkey MODERN SPECIES 22 TMC1 (ENSEASG00005036859) ZFAND5 (ENSEASG00005009586) ENSEASG00005009587 ENSEASG00005007984 #10 ENSEASG00005007991 #11 SOD3 (ENSEASG00005033891) #12 CCDC149 (ENSEASG00005008000) #13 LGI2 (ENSEASG00005008001) #14 SEPSECS (ENSEASG00005008003) #15 PI4K2B (ENSEASG00005008006) #16 ZCCHC4 (ENSEASG00005008011) #17 ANAPC4 (ENSEASG00005008014) #18 SLC34A2 (ENSEASG00005008016) #19 SEL1L3 (ENSEASG00005008020) #20 SMIM20 (ENSEASG00005024155) #21 RBPJ (ENSEASG00005008027) #22 CCKAR (ENSEASG00005038229) #23 TBC1D19 (ENSEASG00005008046) #24 STIM2 (ENSEASG00005008051) #25 ENSEASG00005008057 PCDH7 (ENSEASG00005008070) #28 ARAP2 (ENSEASG00005008083) #31 DTHD1 (ENSEASG00005008101) #32 NWD2 (ENSEASG00005008108) #33 C4orf19 (ENSEASG00005025129) #34 RELL1 (ENSEASG00005008112) #35 ENSEASG00005035380 #37 ENSEASG00005008115 #37 TBC1D1 (ENSEASG00005008118) KLF3 (ENSEASG00005008124) TLR10 (ENSEASG00005008127) Artiodactyla ANCESTRAL SPECIES 12 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00860000135660 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT01030000235076 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000163662 Suina ANCESTRAL SPECIES 33 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00940000155145.qb ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b.b #25 ENSGT00390000000214.a.b.a #25 ENSGT00940000157221 #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT01030000235076 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000163662 Chacoan peccary MODERN SPECIES 960 GBA3 (ENSCWAG00000021575) #9 PPARGC1A (ENSCWAG00000021590) #10 ENSCWAG00000021624 DHX15 (ENSCWAG00000021627) #11 SOD3 (ENSCWAG00000021634) #12 CCDC149 (ENSCWAG00000021648) #13 LGI2 (ENSCWAG00000011876) #14 SEPSECS (ENSCWAG00000011958) #15 PI4K2B (ENSCWAG00000011991) #16 ZCCHC4 (ENSCWAG00000012130) #17 ANAPC4 (ENSCWAG00000012255) #18 ENSCWAG00000012413 SLC34A2 (ENSCWAG00000012428) #19 SEL1L3 (ENSCWAG00000012543) #20 SMIM20 (ENSCWAG00000012836) #21 RBPJ (ENSCWAG00000012916) #22 CCKAR (ENSCWAG00000013281) #23 TBC1D19 (ENSCWAG00000013346) #24 STIM2 (ENSCWAG00000013559) #25 ENSCWAG00000013963 PCDH7 (ENSCWAG00000014012) #28 ARAP2 (ENSCWAG00000014103) #31 DTHD1 (ENSCWAG00000014349) #32 ENSCWAG00000014755 NWD2 (ENSCWAG00000014812) #33 C4orf19 (ENSCWAG00000014871) #34 RELL1 (ENSCWAG00000014911) #35 PGM2 (ENSCWAG00000014943) #37 ENSCWAG00000014989 TBC1D1 (ENSCWAG00000015011) KLF3 (ENSCWAG00000015160) Pig MODERN SPECIES 16 GBA3 (ENSSSCG00000008754) #9 PPARGC1A (ENSSSCG00000029275) #10 ENSSSCG00000048996 DHX15 (ENSSSCG00000008756) #11 SOD3 (ENSSSCG00000028814) #12 CCDC149 (ENSSSCG00000023001) #13 LGI2 (ENSSSCG00000028927) #14 SEPSECS (ENSSSCG00000025315) #15 PI4K2B (ENSSSCG00000027340) #16 ZCCHC4 (ENSSSCG00000028581) #17 ANAPC4 (ENSSSCG00000025902) #18 ENSSSCG00000028632 SLC34A2 (ENSSSCG00000008758) #19 SEL1L3 (ENSSSCG00000022446) #20 ENSSSCG00000040571 #21 RBPJ (ENSSSCG00000022155) #22 CCKAR (ENSSSCG00000061661) #23 TBC1D19 (ENSSSCG00000008761) #24 STIM2 (ENSSSCG00000008762) #25 ENSSSCG00000032413 #25 PCDH7 (ENSSSCG00000008765) #28 ENSSSCG00000008767 ARAP2 (ENSSSCG00000008768) #31 DTHD1 (ENSSSCG00000028471) #32 ENSSSCG00000008769 NWD2 (ENSSSCG00000008770) #33 C4orf19 (ENSSSCG00000008771) #34 RELL1 (ENSSSCG00000008772) #35 PGM2 (ENSSSCG00000008773) #37 TBC1D1 (ENSSSCG00000028983) KLF3 (ENSSSCG00000036488) Artiodactyla_a ANCESTRAL SPECIES 12 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00860000135660 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT01030000235076 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000163662 Camelidae ANCESTRAL SPECIES 22 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000163662 ENSGT00940000162884 ENSGT00940000162201 Alpaca MODERN SPECIES 1806 RBPJ (ENSVPAG00000003620) #22 CCKAR (ENSVPAG00000003622) #23 TBC1D19 (ENSVPAG00000003623) #24 STIM2 (ENSVPAG00000003626) #25 Arabian camel MODERN SPECIES 11 KCNIP4 (ENSCDRG00005017078) ADGRA3 (ENSCDRG00005016284) #7 GBA3 (ENSCDRG00005016157) #9 PPARGC1A (ENSCDRG00005015905) #10 ENSCDRG00005015845 DHX15 (ENSCDRG00005015802) #11 CCDC149 (ENSCDRG00005015468) #13 LGI2 (ENSCDRG00005015363) #14 SEPSECS (ENSCDRG00005015323) #15 PI4K2B (ENSCDRG00005015238) #16 ZCCHC4 (ENSCDRG00005015096) #17 ANAPC4 (ENSCDRG00005014928) #18 SLC34A2 (ENSCDRG00005014773) #19 SEL1L3 (ENSCDRG00005014618) #20 SMIM20 (ENSCDRG00005014579) #21 RBPJ (ENSCDRG00005013306) #22 CCKAR (ENSCDRG00005013202) #23 TBC1D19 (ENSCDRG00005012784) #24 STIM2 (ENSCDRG00005011898) #25 PCDH7 (ENSCDRG00005011781) #28 ENSCDRG00005011725 ARAP2 (ENSCDRG00005011185) #31 DTHD1 (ENSCDRG00005010874) #32 NWD2 (ENSCDRG00005010804) #33 C4orf19 (ENSCDRG00005010758) #34 RELL1 (ENSCDRG00005010713) #35 ENSCDRG00005010670 PGM2 (ENSCDRG00005010550) #37 TBC1D1 (ENSCDRG00005010383) KLF3 (ENSCDRG00005010297) TLR10 (ENSCDRG00005010269) Artiodactyla_b ANCESTRAL SPECIES 16 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00860000135660 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT01030000235076 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000163662 Pecora ANCESTRAL SPECIES 15 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398.f #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00860000135660 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949.c.b ENSGT01030000235076 ENSGT00940000157949.c.a ENSGT00940000157456 Yarkand deer MODERN SPECIES 8 KCNIP4 (ENSCHYG00000020826) ADGRA3 (ENSCHYG00000021204) #7 GBA3 (ENSCHYG00000021332) #9 PPARGC1A (ENSCHYG00000021428) #10 DHX15 (ENSCHYG00000021793) #11 SOD3 (ENSCHYG00000006891) #12 CCDC149 (ENSCHYG00000006926) #13 LGI2 (ENSCHYG00000007044) #14 SEPSECS (ENSCHYG00000007094) #15 PI4K2B (ENSCHYG00000007192) #16 ZCCHC4 (ENSCHYG00000007309) #17 ANAPC4 (ENSCHYG00000007432) #18 SEL1L3 (ENSCHYG00000007618) #20 ENSCHYG00000008010 #21 ENSCHYG00000008030 RBPJ (ENSCHYG00000008084) #22 CCKAR (ENSCHYG00000008569) #23 TBC1D19 (ENSCHYG00000008635) #24 ENSCHYG00000009099 STIM2 (ENSCHYG00000009144) #25 ENSCHYG00000009335 ENSCHYG00000009369 PCDH7 (ENSCHYG00000009443) #28 ENSCHYG00000009498 ARAP2 (ENSCHYG00000009613) #31 DTHD1 (ENSCHYG00000010657) #32 NWD2 (ENSCHYG00000011104) #33 C4orf19 (ENSCHYG00000011230) #34 RELL1 (ENSCHYG00000011263) #35 ENSCHYG00000011389 PGM2 (ENSCHYG00000011452) #37 Percora_a ANCESTRAL SPECIES 18 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398.f #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00860000135660 ENSGT00940000154788 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949.c.b ENSGT01030000235076 ENSGT00940000157949.c.a Siberian musk deer MODERN SPECIES 1269 GBA3 (ENSMMSG00000014264) #9 PPARGC1A (ENSMMSG00000014222) #10 DHX15 (ENSMMSG00000014182) #11 SOD3 (ENSMMSG00000014159) #12 CCDC149 (ENSMMSG00000014088) #13 LGI2 (ENSMMSG00000014063) #14 SEPSECS (ENSMMSG00000014034) #15 PI4K2B (ENSMMSG00000013983) #16 ENSMMSG00000013962 #17 ANAPC4 (ENSMMSG00000013938) #18 ENSMMSG00000013917 SLC34A2 (ENSMMSG00000013857) #19 SEL1L3 (ENSMMSG00000013767) #20 ENSMMSG00000013746 #21 ENSMMSG00000013732 RBPJ (ENSMMSG00000013568) #22 CCKAR (ENSMMSG00000013523) #23 ENSMMSG00000013500 ##8 TBC1D19 (ENSMMSG00000013351) #24 STIM2 (ENSMMSG00000013185) #25 ENSMMSG00000013164 ENSMMSG00000013140 ENSMMSG00000013133 PCDH7 (ENSMMSG00000013089) #28 ENSMMSG00000013078 ENSMMSG00000013060 ENSMMSG00000013043 Bovidae ANCESTRAL SPECIES 18 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398.f #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00940000154788.ob ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000153446.a.a.f ENSGT00940000156247 #37 ENSGT00940000157949.c.b ENSGT01030000235076 ENSGT00940000157949.c.a Bovinae ANCESTRAL SPECIES 15 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398.f.b.b #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00940000154788.nb.a ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00960000190968 ENSGT01100000263474.a.b.b.e.a.a.a.a.u.b.a ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000153446.a.a.f ENSGT00940000156247 #37 ENSGT01030000235076 Bos ANCESTRAL SPECIES 15 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398.f.b.b #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT01100000263481.n.a.b.a.a.a.b.b.a.a.b.b.a.b.b.a.b.a.b ENSGT00940000154788.nb.a ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00960000190968 ENSGT01100000263474.a.b.b.e.a.a.a.a.u.b.a ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000153446.a.a.f ENSGT00940000156247 #37 Bos_a ANCESTRAL SPECIES 21 ENSGT00940000155133.b.n ENSGT00550000075088.a.a.ob.b ENSGT00390000006247.e.a ENSGT00940000154222.d.b.d.g.a.a ENSGT00940000153692.A ENSGT00950000183015.D ENSGT00940000155680.d ENSGT00940000158223 ENSGT00940000160897 ENSGT01030000234574.B.c.a.a ENSGT00530000063424.b ENSGT00390000003791.a.a.a ENSGT00940000157350 ENSGT00390000004874.a.b ENSGT00390000002398.f.b.b #21 ENSGT00390000005197.a #22 ENSGT00940000153771.B ENSGT00940000165276 ENSGT00940000157329 ENSGT00940000153510.b ENSGT00940000155881 ENSGT00940000161474.b ENSGT00390000003175.a.b ENSGT00940000162090 ENSGT01030000234578.A.a ENSGT00440000039914.l ENSGT00940000154426.b.b.g.a ENSGT00940000158010 ENSGT00950000185288 ENSGT00940000155816.b ENSGT00940000159393.e Domestic yak DUPLICATION Domestic yak MODERN SPECIES 25 ENSBGRG00000016888 MAPK10 (ENSBGRG00000017007) ARHGAP24 (ENSBGRG00000018148) ENSBGRG00000018396 WDFY3 (ENSBGRG00000018444) ENSBGRG00000020638 CDS1 (ENSBGRG00000020658) NKX6-1 (ENSBGRG00000020754) ENSBGRG00000020797 ABRAXAS1 (ENSBGRG00000020830) MRPS18C (ENSBGRG00000020952) ENSBGRG00000021080 ENSBGRG00000021100 HPSE (ENSBGRG00000021245) COQ2 (ENSBGRG00000021631) ENSBGRG00000021702 #22 ENSBGRG00000021746 PLAC8 (ENSBGRG00000021788) COPS4 (ENSBGRG00000021845) LIN54 (ENSBGRG00000021975) THAP9 (ENSBGRG00000022302) SEC31A (ENSBGRG00000022409) SCD5 (ENSBGRG00000023293) TMEM150C (ENSBGRG00000023370) ENOPH1 (ENSBGRG00000023470) ENSBGRG00000023638 RASGEF1B (ENSBGRG00000023927) PRKG2 (ENSBGRG00000024304) BMP3 (ENSBGRG00000024470) CFAP299 (ENSBGRG00000024488) FGF5 (ENSBGRG00000010381) Domestic yak MODERN SPECIES 25 GBA3 (ENSBGRG00000014640) #9 ENSBGRG00000014626 PPARGC1A (ENSBGRG00000014262) #10 DHX15 (ENSBGRG00000014165) #11 SOD3 (ENSBGRG00000014092) #12 CCDC149 (ENSBGRG00000013831) #13 LGI2 (ENSBGRG00000013655) #14 ENSBGRG00000013588 #15 ENSBGRG00000013553 #15 PI4K2B (ENSBGRG00000013424) #16 ZCCHC4 (ENSBGRG00000013290) #17 ANAPC4 (ENSBGRG00000012791) #18 SLC34A2 (ENSBGRG00000012616) #19 SEL1L3 (ENSBGRG00000012074) #20 ENSBGRG00000011943 #21 ENSBGRG00000011453 #22 CCKAR (ENSBGRG00000011346) #23 TBC1D19 (ENSBGRG00000010907) #24 STIM2 (ENSBGRG00000010679) #25 PCDH7 (ENSBGRG00000010538) #28 ENSBGRG00000010506 ENSBGRG00000010405 ENSBGRG00000010382 ENSBGRG00000005033 ARAP2 (ENSBGRG00000004941) #31 ENSBGRG00000004904 DTHD1 (ENSBGRG00000004754) #32 ENSBGRG00000004728 NWD2 (ENSBGRG00000004653) #33 C4orf19 (ENSBGRG00000004620) #34 RELL1 (ENSBGRG00000004570) #35 Wild yak DUPLICATION Wild yak MODERN SPECIES 1808 HPSE (ENSBMUG00000009695) ENSBMUG00000009646 #22 COQ2 (ENSBMUG00000009639) Wild yak MODERN SPECIES 883 ADGRA3 (ENSBMUG00000008551) #7 GBA3 (ENSBMUG00000008806) #9 PPARGC1A (ENSBMUG00000008896) #10 DHX15 (ENSBMUG00000008926) #11 SOD3 (ENSBMUG00000008945) #12 CCDC149 (ENSBMUG00000009015) #13 LGI2 (ENSBMUG00000009065) #14 ENSBMUG00000009078 #15 ENSBMUG00000009090 #15 PI4K2B (ENSBMUG00000009097) #16 ZCCHC4 (ENSBMUG00000009112) #17 ANAPC4 (ENSBMUG00000009147) #18 SLC34A2 (ENSBMUG00000009192) #19 SEL1L3 (ENSBMUG00000009222) #20 ENSBMUG00000009243 #21 ENSBMUG00000009400 #22 CCKAR (ENSBMUG00000009499) #23 Bos_b ANCESTRAL SPECIES 14 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398.f.b.b #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000165919 ENSGT00940000157221 #28 ENSGT01100000263481.n.a.b.a.a.a.b.b.a.a.b.b.a.b.b.a.b.a.b ENSGT00940000154788.nb.a ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00960000190968 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000153446.a.a.f ENSGT00940000156247 #37 Hybrid Bos Indicus DUPLICATION Hybrid Bos Indicus MODERN SPECIES 25 ENSBIXG00005017276 ENSBIXG00005017372 ENSBIXG00005002829 ENSBIXG00005005513 MAPK10 (ENSBIXG00005018360) ARHGAP24 (ENSBIXG00005018506) WDFY3 (ENSBIXG00005018815) CDS1 (ENSBIXG00005000063) NKX6-1 (ENSBIXG00005003082) ENSBIXG00005018974 ABRAXAS1 (ENSBIXG00005019067) ENSBIXG00005019139 HELQ (ENSBIXG00005019158) ENSBIXG00005019178 HPSE (ENSBIXG00005019430) ENSBIXG00005003170 #22 COQ2 (ENSBIXG00005019522) ENSBIXG00005019535 ENSBIXG00005019584 COPS4 (ENSBIXG00005019645) LIN54 (ENSBIXG00005003283) THAP9 (ENSBIXG00005006456) SEC31A (ENSBIXG00005020914) ENSBIXG00005021130 ENSBIXG00005003572 SCD5 (ENSBIXG00005003574) ENSBIXG00005021178 TMEM150C (ENSBIXG00005003590) ENOPH1 (ENSBIXG00005021273) HNRNPDL (ENSBIXG00005021441) ENSBIXG00005003631 Hybrid Bos Indicus MODERN SPECIES 25 KCNIP4 (ENSBIXG00005016282) ADGRA3 (ENSBIXG00005016078) #7 GBA3 (ENSBIXG00005002538) #9 PPARGC1A (ENSBIXG00005002513) #10 DHX15 (ENSBIXG00005000158) #11 SOD3 (ENSBIXG00005015766) #12 CCDC149 (ENSBIXG00005015720) #13 LGI2 (ENSBIXG00005015662) #14 SEPSECS (ENSBIXG00005015627) #15 PI4K2B (ENSBIXG00005007139) #16 ZCCHC4 (ENSBIXG00005015528) #17 ANAPC4 (ENSBIXG00005015494) #18 SLC34A2 (ENSBIXG00005015405) #19 SEL1L3 (ENSBIXG00005015302) #20 ENSBIXG00005015232 #21 ENSBIXG00005015160 #22 ENSBIXG00005014915 CCKAR (ENSBIXG00005014904) #23 TBC1D19 (ENSBIXG00005014867) #24 STIM2 (ENSBIXG00005014774) #25 ENSBIXG00005014691 ENSBIXG00005014672 PCDH7 (ENSBIXG00005014583) #28 ENSBIXG00005014562 ENSBIXG00005014544 ARAP2 (ENSBIXG00005014502) #31 DTHD1 (ENSBIXG00005014282) #32 ENSBIXG00005014188 NWD2 (ENSBIXG00005001843) #33 C4orf19 (ENSBIXG00005014137) #34 RELL1 (ENSBIXG00005014109) #35 Cow DUPLICATION Cow MODERN SPECIES 25 ENSBTAG00000050963 ENSBTAG00000047514 PTPN13 (ENSBTAG00000014947) ENSBTAG00000050276 ENSBTAG00000045839 MAPK10 (ENSBTAG00000020048) ARHGAP24 (ENSBTAG00000003959) WDFY3 (ENSBTAG00000013495) CDS1 (ENSBTAG00000045787) NKX6-1 (ENSBTAG00000002518) GPAT3 (ENSBTAG00000017592) ABRAXAS1 (ENSBTAG00000014076) MRPS18C (ENSBTAG00000018155) HELQ (ENSBTAG00000018151) HPSE (ENSBTAG00000005745) ENSBTAG00000046700 #22 COQ2 (ENSBTAG00000005744) PLAC8A (ENSBTAG00000009849) PLAC8B (ENSBTAG00000031750) COPS4 (ENSBTAG00000006950) LIN54 (ENSBTAG00000010546) THAP9 (ENSBTAG00000022450) SEC31A (ENSBTAG00000020525) SCD5 (ENSBTAG00000022449) TMEM150C (ENSBTAG00000032588) ENOPH1 (ENSBTAG00000014805) HNRNPDL (ENSBTAG00000014804) HNRNPD (ENSBTAG00000013952) ENSBTAG00000052070 RASGEF1B (ENSBTAG00000006561) PRKG2 (ENSBTAG00000002978) Cow MODERN SPECIES 25 ENSBTAG00000054175 ENSBTAG00000033327 PPARGC1A (ENSBTAG00000017024) #10 ENSBTAG00000050251 DHX15 (ENSBTAG00000008896) #11 SOD3 (ENSBTAG00000013980) #12 CCDC149 (ENSBTAG00000021940) #13 LGI2 (ENSBTAG00000017390) #14 SEPSECS (ENSBTAG00000014616) #15 PI4K2B (ENSBTAG00000006492) #16 ZCCHC4 (ENSBTAG00000007240) #17 ANAPC4 (ENSBTAG00000000646) #18 SLC34A2 (ENSBTAG00000001545) #19 SEL1L3 (ENSBTAG00000002299) #20 SMIM20 (ENSBTAG00000003897) #21 RBPJ (ENSBTAG00000003602) #22 CCKAR (ENSBTAG00000004988) #23 TBC1D19 (ENSBTAG00000033214) #24 STIM2 (ENSBTAG00000019353) #25 ENSBTAG00000018885 PCDH7 (ENSBTAG00000000061) #28 ENSBTAG00000048536 ARAP2 (ENSBTAG00000039922) #31 DTHD1 (ENSBTAG00000009833) #32 ENSBTAG00000050655 NWD2 (ENSBTAG00000001491) #33 C6H4orf19 (ENSBTAG00000006643) #34 RELL1 (ENSBTAG00000004329) #35 ENSBTAG00000053088 PGM2 (ENSBTAG00000005773) #37 ENSBTAG00000052370 American bison DUPLICATION American bison MODERN SPECIES 3145 ENSBBBG00000019073 MAPK10 (ENSBBBG00000021242) ENSBBBG00000021405 ARHGAP24 (ENSBBBG00000021449) WDFY3 (ENSBBBG00000021530) CDS1 (ENSBBBG00000021561) NKX6-1 (ENSBBBG00000021568) GPAT3 (ENSBBBG00000021607) ABRAXAS1 (ENSBBBG00000021618) ENSBBBG00000007196 HELQ (ENSBBBG00000005762) HPSE (ENSBBBG00000021800) ENSBBBG00000021819 #22 COQ2 (ENSBBBG00000021841) ENSBBBG00000005784 PLAC8 (ENSBBBG00000021864) COPS4 (ENSBBBG00000021925) LIN54 (ENSBBBG00000022049) THAP9 (ENSBBBG00000005822) SEC31A (ENSBBBG00000022615) SCD5 (ENSBBBG00000008790) TMEM150C (ENSBBBG00000022705) ENSBBBG00000022729 HNRNPDL (ENSBBBG00000005995) HNRNPD (ENSBBBG00000022878) ENSBBBG00000022894 RASGEF1B (ENSBBBG00000023005) PRKG2 (ENSBBBG00000023088) American bison MODERN SPECIES 3060 ADGRA3 (ENSBBBG00000015349) #7 GBA3 (ENSBBBG00000015331) #9 PPARGC1A (ENSBBBG00000003508) #10 DHX15 (ENSBBBG00000001321) #11 SOD3 (ENSBBBG00000001360) #12 CCDC149 (ENSBBBG00000001370) #13 LGI2 (ENSBBBG00000015299) #14 SEPSECS (ENSBBBG00000015291) #15 PI4K2B (ENSBBBG00000015277) #16 ZCCHC4 (ENSBBBG00000003522) #17 ANAPC4 (ENSBBBG00000003767) #18 SLC34A2 (ENSBBBG00000015150) #19 SEL1L3 (ENSBBBG00000015090) #20 ENSBBBG00000015008 #21 ENSBBBG00000014989 #22 CCKAR (ENSBBBG00000000817) #23 TBC1D19 (ENSBBBG00000000826) #24 STIM2 (ENSBBBG00000000908) #25 PCDH7 (ENSBBBG00000001030) #28 ENSBBBG00000001043 ENSBBBG00000001055 Caprinae ANCESTRAL SPECIES 13 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398.e.b #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000165919 ENSGT00390000003718.d.tb.a.a ENSGT00940000157221 #28 ENSGT00940000154788.ob ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949.c.b ENSGT00940000157949.c.a Goat MODERN SPECIES 25 ADGRA3 (ENSCHIG00000019880) #7 GBA3 (ENSCHIG00000011472) #9 PPARGC1A (ENSCHIG00000015991) #10 DHX15 (ENSCHIG00000026321) #11 SOD3 (ENSCHIG00000017899) #12 CCDC149 (ENSCHIG00000015517) #13 LGI2 (ENSCHIG00000022089) #14 SEPSECS (ENSCHIG00000010810) #15 PI4K2B (ENSCHIG00000022484) #16 ZCCHC4 (ENSCHIG00000022645) #17 ANAPC4 (ENSCHIG00000023609) #18 SLC34A2 (ENSCHIG00000015739) #19 SEL1L3 (ENSCHIG00000020813) #20 ENSCHIG00000016018 ENSCHIG00000026046 #21 RBPJ (ENSCHIG00000022041) #22 CCKAR (ENSCHIG00000024465) #23 TBC1D19 (ENSCHIG00000015018) #24 STIM2 (ENSCHIG00000004257) #25 ENSCHIG00000013741 ENSCHIG00000010665 PCDH7 (ENSCHIG00000003875) #28 ENSCHIG00000023385 ENSCHIG00000009154 ARAP2 (ENSCHIG00000014093) #31 ENSCHIG00000022196 DTHD1 (ENSCHIG00000018566) #32 NWD2 (ENSCHIG00000004289) #33 C4orf19 (ENSCHIG00000015946) #34 RELL1 (ENSCHIG00000005379) #35 ENSCHIG00000022059 Rambouillet Sheep MODERN SPECIES 22 GBA3 (ENSOARG00020014356) #9 PPARGC1A (ENSOARG00020014504) #10 DHX15 (ENSOARG00020015199) #11 SOD3 (ENSOARG00020015395) #12 CCDC149 (ENSOARG00020015431) #13 LGI2 (ENSOARG00020015826) #14 SEPSECS (ENSOARG00020015918) #15 PI4K2B (ENSOARG00020015990) #16 ZCCHC4 (ENSOARG00020016087) #17 ANAPC4 (ENSOARG00020016174) #18 ENSOARG00020017059 SLC34A2 (ENSOARG00020017154) #19 SEL1L3 (ENSOARG00020017417) #20 ENSOARG00020019074 ENSOARG00020019119 #21 RBPJ (ENSOARG00020019203) #22 CCKAR (ENSOARG00020019878) #23 TBC1D19 (ENSOARG00020019954) #24 STIM2 (ENSOARG00020020357) #25 ENSOARG00020020464 ENSOARG00020020499 PCDH7 (ENSOARG00020020567) #28 ENSOARG00020020648 ARAP2 (ENSOARG00020020778) #31 DTHD1 (ENSOARG00020021575) #32 NWD2 (ENSOARG00020021937) #33 C6H4orf19 (ENSOARG00020021966) #34 RELL1 (ENSOARG00020021988) #35 PGM2 (ENSOARG00020022008) #37 TBC1D1 (ENSOARG00020022096) KLF3 (ENSOARG00020022589) Cetacea ANCESTRAL SPECIES 12 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398.d #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00860000135660 ENSGT00990000211064 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00960000191194 ENSGT00940000157949 ENSGT00940000157456 Odontoceti DUPLICATION Odontoceti DUPLICATION Odontoceti ANCESTRAL SPECIES ENSGT00390000005197.a.y.a #22 Odontoceti_a ANCESTRAL SPECIES ENSGT00390000005197.a.y.a #22 Odontoceti_b ANCESTRAL SPECIES 11 ENSGT00940000158402 ENSGT00940000159756 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00390000005197.a.y.a #22 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398.d #21 ENSGT00390000005197.a.z #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00970000193421.C.b.d.a.a.a ENSGT00940000157221 #28 ENSGT00860000135660 ENSGT00990000211064 ENSGT00940000160787.b ENSGT00940000160197 #31 ENSGT00940000155541.C.eb.b ENSGT00940000153404.b #32 Vaquita MODERN SPECIES 16 SLIT2 (ENSPSNG00000017795) PACRGL (ENSPSNG00000019499) KCNIP4 (ENSPSNG00000019756) ADGRA3 (ENSPSNG00000020337) #7 PPARGC1A (ENSPSNG00000020569) #10 ENSPSNG00000020646 ENSPSNG00000020677 DHX15 (ENSPSNG00000020699) #11 SOD3 (ENSPSNG00000020739) #12 CCDC149 (ENSPSNG00000020784) #13 LGI2 (ENSPSNG00000020909) #14 SEPSECS (ENSPSNG00000020956) #15 PI4K2B (ENSPSNG00000021008) #16 ZCCHC4 (ENSPSNG00000021077) #17 ANAPC4 (ENSPSNG00000021117) #18 ENSPSNG00000021159 #22 SLC34A2 (ENSPSNG00000021188) #19 SEL1L3 (ENSPSNG00000021270) #20 SMIM20 (ENSPSNG00000021406) #21 ENSPSNG00000021513 #22 CCKAR (ENSPSNG00000021657) #23 TBC1D19 (ENSPSNG00000021702) #24 ENSPSNG00000021771 STIM2 (ENSPSNG00000021816) #25 ENSPSNG00000021862 ENSPSNG00000000096 PCDH7 (ENSPSNG00000000169) #28 ENSPSNG00000000209 ENSPSNG00000000226 ENSPSNG00000000255 ENSPSNG00000000272 Monodontidae ANCESTRAL SPECIES 9 ENSGT00940000158402 ENSGT00940000159756 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00390000005197.a.y.a #22 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398.d #21 ENSGT00390000005197.a.z #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00860000135660 ENSGT00990000211064 ENSGT00940000155534.f.b ENSGT00940000160787.b ENSGT00940000160197 #31 ENSGT00940000155541.C.eb.b ENSGT00940000153404.b #32 Narwhal MODERN SPECIES 307 ENSMMNG00015009273 SLIT2 (ENSMMNG00015009152) PACRGL (ENSMMNG00015009050) KCNIP4 (ENSMMNG00015008956) ADGRA3 (ENSMMNG00015008884) #7 ENSMMNG00015008863 #9 PPARGC1A (ENSMMNG00015008833) #10 ENSMMNG00015008809 DHX15 (ENSMMNG00015008799) #11 CCDC149 (ENSMMNG00015008754) #13 LGI2 (ENSMMNG00015008731) #14 SEPSECS (ENSMMNG00015008713) #15 PI4K2B (ENSMMNG00015008695) #16 ZCCHC4 (ENSMMNG00015008659) #17 ANAPC4 (ENSMMNG00015008631) #18 ENSMMNG00015008616 #22 SLC34A2 (ENSMMNG00015008603) #19 SEL1L3 (ENSMMNG00015008572) #20 ENSMMNG00015008545 #21 ENSMMNG00015008477 #22 CCKAR (ENSMMNG00015008421) #23 TBC1D19 (ENSMMNG00015008369) #24 ENSMMNG00015008341 STIM2 (ENSMMNG00015008324) #25 ENSMMNG00015008293 PCDH7 (ENSMMNG00015008274) #28 ENSMMNG00015008263 ENSMMNG00015008253 ENSMMNG00015008245 ENSMMNG00015008234 ARAP2 (ENSMMNG00015008196) #31 Odontoceti ANCESTRAL SPECIES 6 ENSGT00390000006595 ENSGT00940000161223 ENSGT00940000153599.A ENSGT00950000183007.a.a.b ENSGT00390000003568 ENSGT00950000182904.a.a.b ENSGT00940000153599.B.b ENSGT00390000010734.j.b.h.a ENSGT00940000161267.b ENSGT00940000164159 ENSGT00940000162545 ENSGT00940000163462 ENSGT00940000162119 ENSGT00940000162819 ENSGT00940000163265 ENSGT00390000005197.a.y.b #22 ENSGT00940000162402 ENSGT00940000162215 ENSGT00940000163580 ENSGT00940000162315 ENSGT00390000015308 ENSGT00940000162848 ENSGT01100000263479.C ENSGT00940000161392 ENSGT00940000162336 ENSGT00940000161038 ENSGT00940000161167 ENSGT00390000003308.a ENSGT00950000182929.B.b ENSGT00390000015914 ENSGT00390000007913 Odontoceti_a ANCESTRAL SPECIES 7 ENSGT00940000153599.A ENSGT00950000183007.a.a.b ENSGT00390000003568 ENSGT00950000182904.a.a.b ENSGT00940000153599.B.b ENSGT00390000010734.j.b.h.a ENSGT00940000161267.b ENSGT00940000164159 ENSGT00940000162545 ENSGT00940000163462 ENSGT00940000162119 ENSGT00940000162819 ENSGT00940000163265 ENSGT00390000002398.d #21 ENSGT00390000005197.a.z #22 ENSGT00390000005197.a.y.b #22 ENSGT00940000162402 ENSGT00940000162215 ENSGT00940000163580 ENSGT00940000162315 ENSGT00390000015308 ENSGT00940000162848 ENSGT01100000263479.C ENSGT00940000161392 ENSGT00940000162336 ENSGT00940000161038 ENSGT00940000161167 ENSGT00390000003308.a ENSGT00950000182929.B.b ENSGT00390000015914 ENSGT00390000007913 Odontoceti_b ANCESTRAL SPECIES 5 ENSGT00730000111407 ENSGT00390000006595 ENSGT00940000161223 ENSGT00940000153599.A ENSGT00950000183007.a.a.b ENSGT00390000003568 ENSGT00950000182904.a.a.b ENSGT00390000010734.j.b.h.a ENSGT00940000161267.b ENSGT00940000164159 ENSGT00940000162545 ENSGT00940000163462 ENSGT00940000162119 ENSGT00940000162819 ENSGT00940000163265 ENSGT00390000005197.a.y.b #22 ENSGT00940000162402 ENSGT00940000162215 ENSGT00940000163580 ENSGT00940000162315 ENSGT00940000162848 ENSGT01100000263479.C ENSGT00940000161392 ENSGT00940000162336 ENSGT00940000161038 ENSGT00940000161167 ENSGT00390000003308.a ENSGT00950000182929.B.b ENSGT00390000015914 ENSGT00390000007913 ENSGT00530000063461.B Vaquita MODERN SPECIES 10 ZNF428 (ENSPSNG00000012675) CADM4 (ENSPSNG00000012638) PLAUR (ENSPSNG00000012605) IRGC (ENSPSNG00000012553) SMG9 (ENSPSNG00000012488) KCNN4 (ENSPSNG00000012439) ENSPSNG00000012199 ENSPSNG00000012110 ZNF404 (ENSPSNG00000012045) ZNF45 (ENSPSNG00000011992) ZNF234 (ENSPSNG00000011970) ZNF226 (ENSPSNG00000011933) ENSPSNG00000011903 ZNF227 (ENSPSNG00000011880) ENSPSNG00000011845 ENSPSNG00000011802 #22 ZNF235 (ENSPSNG00000011738) ZNF112 (ENSPSNG00000011685) ENSPSNG00000011637 ZNF180 (ENSPSNG00000011592) PVR (ENSPSNG00000011424) CEACAM16 (ENSPSNG00000011329) BCL3 (ENSPSNG00000011274) CBLC (ENSPSNG00000011032) BCAM (ENSPSNG00000010946) NECTIN2 (ENSPSNG00000010879) TOMM40 (ENSPSNG00000010804) APOE (ENSPSNG00000010763) ENSPSNG00000010685 APOC2 (ENSPSNG00000010569) CLPTM1 (ENSPSNG00000010345) Sperm whale MODERN SPECIES 8 ZNF428 (ENSPCTG00005004804) ZNF576 (ENSPCTG00005004787) IRGQ (ENSPCTG00005004773) ENSPCTG00005004754 XRCC1 (ENSPCTG00005004727) SMG9 (ENSPCTG00005004696) KCNN4 (ENSPCTG00005004665) LYPD5 (ENSPCTG00005004646) ENSPCTG00005004632 ZNF283 (ENSPCTG00005004607) ZNF404 (ENSPCTG00005004577) ENSPCTG00005004558 ZNF234 (ENSPCTG00005004394) ZNF227 (ENSPCTG00005004283) ZNF233 (ENSPCTG00005019492) ENSPCTG00005019460 #22 ZNF235 (ENSPCTG00005019382) ZNF112 (ENSPCTG00005019339) ZNF180 (ENSPCTG00005019212) PPP1R37 (ENSPCTG00005019110) NKPD1 (ENSPCTG00005019081) ENSPCTG00005018967 BLOC1S3 (ENSPCTG00005018936) EXOC3L2 (ENSPCTG00005018759) APOE (ENSPCTG00005018722) RELB (ENSPCTG00005018535) CLASRP (ENSPCTG00005018407) ENSPCTG00005018377 GGN (ENSPCTG00005018321) PSMD8 (ENSPCTG00005018243) ENSPCTG00005016796 Odontoceti ANCESTRAL SPECIES 11 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398.d #21 ENSGT00390000005197.a.z #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00970000193421.C.b.d.a.a.a ENSGT00940000157221 #28 ENSGT00860000135660 ENSGT00990000211064 ENSGT00940000160197 #31 ENSGT00940000155541.C.eb.b ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00960000191194 Sperm whale MODERN SPECIES 18 KCNIP4 (ENSPCTG00005012048) ADGRA3 (ENSPCTG00005011845) #7 ENSPCTG00005011760 #9 PPARGC1A (ENSPCTG00005011631) #10 DHX15 (ENSPCTG00005011521) #11 SOD3 (ENSPCTG00005011496) #12 CCDC149 (ENSPCTG00005011289) #13 LGI2 (ENSPCTG00005011194) #14 SEPSECS (ENSPCTG00005011169) #15 PI4K2B (ENSPCTG00005011034) #16 ZCCHC4 (ENSPCTG00005010952) #17 ANAPC4 (ENSPCTG00005010830) #18 ENSPCTG00005010721 #19 SEL1L3 (ENSPCTG00005010228) #20 ENSPCTG00005010143 #19 ENSPCTG00005009702 #22 CCKAR (ENSPCTG00005009612) #23 TBC1D19 (ENSPCTG00005009308) #24 ENSPCTG00005009237 STIM2 (ENSPCTG00005008859) #25 ENSPCTG00005008821 ENSPCTG00005008787 PCDH7 (ENSPCTG00005008773) #28 ENSPCTG00005008758 ENSPCTG00005008723 ENSPCTG00005008684 #31 ENSPCTG00005018478 DTHD1 (ENSPCTG00005018074) #32 ENSPCTG00005018056 ENSPCTG00005018031 ENSPCTG00005018016 Odontoceti_a ANCESTRAL SPECIES 7 ENSGT00940000161223 ENSGT00940000153599.A ENSGT00950000183007.a.a.b ENSGT00390000003568 ENSGT00950000182904.a.a.b ENSGT00940000153599.B.b ENSGT00390000010734.j.b.h.a ENSGT00940000161267.b ENSGT00940000164159 ENSGT00940000162545 ENSGT00940000163462 ENSGT00940000162119 ENSGT00940000162819 ENSGT00940000163265 ENSGT00390000002398.d #21 ENSGT00390000005197.a.z #22 ENSGT00390000005197.a.y.b #22 ENSGT00940000162402 ENSGT00940000162215 ENSGT00940000163580 ENSGT00940000162315 ENSGT00390000015308 ENSGT00940000162848 ENSGT01100000263479.C ENSGT00940000161392 ENSGT00940000162336 ENSGT00940000161038 ENSGT00940000161167 ENSGT00390000003308.a ENSGT00950000182929.B.b ENSGT00390000015914 Dolphin MODERN SPECIES 1708 RBPJ (ENSTTRG00000009022) #22 CCKAR (ENSTTRG00000009078) #23 Odontoceti_b ANCESTRAL SPECIES 11 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00390000005197.a.y.a #22 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398.d #21 ENSGT00390000005197.a.z #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00970000193421.C.b.d.a.a.a ENSGT00940000157221 #28 ENSGT00860000135660 ENSGT00990000211064 ENSGT00940000160787.b ENSGT00940000160197 #31 ENSGT00940000155541.C.eb.b ENSGT00940000153404.b #32 ENSGT00390000018316.b.b.g.b ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 Vaquita MODERN SPECIES 16 PPARGC1A (ENSPSNG00000020569) #10 ENSPSNG00000020646 ENSPSNG00000020677 DHX15 (ENSPSNG00000020699) #11 SOD3 (ENSPSNG00000020739) #12 CCDC149 (ENSPSNG00000020784) #13 LGI2 (ENSPSNG00000020909) #14 SEPSECS (ENSPSNG00000020956) #15 PI4K2B (ENSPSNG00000021008) #16 ZCCHC4 (ENSPSNG00000021077) #17 ANAPC4 (ENSPSNG00000021117) #18 ENSPSNG00000021159 #22 SLC34A2 (ENSPSNG00000021188) #19 SEL1L3 (ENSPSNG00000021270) #20 SMIM20 (ENSPSNG00000021406) #21 ENSPSNG00000021513 #22 CCKAR (ENSPSNG00000021657) #23 TBC1D19 (ENSPSNG00000021702) #24 ENSPSNG00000021771 STIM2 (ENSPSNG00000021816) #25 ENSPSNG00000021862 ENSPSNG00000000096 PCDH7 (ENSPSNG00000000169) #28 ENSPSNG00000000209 ENSPSNG00000000226 ENSPSNG00000000255 ENSPSNG00000000272 ENSPSNG00000000293 ENSPSNG00000000307 ARAP2 (ENSPSNG00000000450) #31 ENSPSNG00000000612 Monodontidae ANCESTRAL SPECIES 9 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00900000143693 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00390000005197.a.y.a #22 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398.d #21 ENSGT00390000005197.a.z #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00860000135660 ENSGT00990000211064 ENSGT00940000155534.f.b ENSGT00940000160787.b ENSGT00940000160197 #31 ENSGT00940000155541.C.eb.b ENSGT00940000153404.b #32 ENSGT00390000018316.b.b.g.b ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 Beluga whale MODERN SPECIES 77 KCNIP4 (ENSDLEG00000014391) ADGRA3 (ENSDLEG00000014341) #7 PPARGC1A (ENSDLEG00000014290) #10 ENSDLEG00000014273 DHX15 (ENSDLEG00000014245) #11 SOD3 (ENSDLEG00000014224) #12 CCDC149 (ENSDLEG00000014195) #13 LGI2 (ENSDLEG00000014089) #14 SEPSECS (ENSDLEG00000014056) #15 PI4K2B (ENSDLEG00000014029) #16 ZCCHC4 (ENSDLEG00000013994) #17 ANAPC4 (ENSDLEG00000013885) #18 SLC34A2 (ENSDLEG00000013774) #19 SEL1L3 (ENSDLEG00000013692) #20 SMIM20 (ENSDLEG00000013675) #21 RBPJ (ENSDLEG00000013407) #22 CCKAR (ENSDLEG00000013378) #23 TBC1D19 (ENSDLEG00000013283) #24 ENSDLEG00000013230 STIM2 (ENSDLEG00000013214) #25 ENSDLEG00000013183 PCDH7 (ENSDLEG00000013164) #28 ENSDLEG00000013137 ENSDLEG00000015493 ENSDLEG00000015489 ENSDLEG00000015483 ARAP2 (ENSDLEG00000015400) #31 ENSDLEG00000015377 DTHD1 (ENSDLEG00000015353) #32 ENSDLEG00000015342 ENSDLEG00000015338 Narwhal DUPLICATION Narwhal MODERN SPECIES 296 IRGQ (ENSMMNG00015005465) ZNF576 (ENSMMNG00015005472) ZNF428 (ENSMMNG00015005482) CADM4 (ENSMMNG00015005492) PLAUR (ENSMMNG00015005513) IRGC (ENSMMNG00015005542) SMG9 (ENSMMNG00015005571) KCNN4 (ENSMMNG00015005629) ENSMMNG00015005688 ENSMMNG00015005709 ZNF404 (ENSMMNG00015005731) ZNF226 (ENSMMNG00015005773) ZNF234 (ENSMMNG00015005804) ZNF227 (ENSMMNG00015005818) ZNF233 (ENSMMNG00015005842) ENSMMNG00015005869 #22 ZNF235 (ENSMMNG00015005891) ZNF112 (ENSMMNG00015005915) ZNF180 (ENSMMNG00015005951) PVR (ENSMMNG00015005992) CEACAM16 (ENSMMNG00015006016) BCL3 (ENSMMNG00015006047) CBLC (ENSMMNG00015006080) BCAM (ENSMMNG00015006104) NECTIN2 (ENSMMNG00015006141) TOMM40 (ENSMMNG00015006165) APOE (ENSMMNG00015006181) ENSMMNG00015006191 APOC2 (ENSMMNG00015006207) CLPTM1 (ENSMMNG00015006240) RELB (ENSMMNG00015006315) Narwhal MODERN SPECIES 307 ADGRA3 (ENSMMNG00015008884) #7 ENSMMNG00015008863 #9 PPARGC1A (ENSMMNG00015008833) #10 ENSMMNG00015008809 DHX15 (ENSMMNG00015008799) #11 CCDC149 (ENSMMNG00015008754) #13 LGI2 (ENSMMNG00015008731) #14 SEPSECS (ENSMMNG00015008713) #15 PI4K2B (ENSMMNG00015008695) #16 ZCCHC4 (ENSMMNG00015008659) #17 ANAPC4 (ENSMMNG00015008631) #18 ENSMMNG00015008616 #22 SLC34A2 (ENSMMNG00015008603) #19 SEL1L3 (ENSMMNG00015008572) #20 ENSMMNG00015008545 #21 ENSMMNG00015008477 #22 CCKAR (ENSMMNG00015008421) #23 TBC1D19 (ENSMMNG00015008369) #24 ENSMMNG00015008341 STIM2 (ENSMMNG00015008324) #25 ENSMMNG00015008293 PCDH7 (ENSMMNG00015008274) #28 ENSMMNG00015008263 ENSMMNG00015008253 ENSMMNG00015008245 ENSMMNG00015008234 ARAP2 (ENSMMNG00015008196) #31 ENSMMNG00015008174 DTHD1 (ENSMMNG00015008156) #32 ENSMMNG00015008131 ENSMMNG00015008120 Blue whale DUPLICATION Blue whale MODERN SPECIES 10 ZNF576 (ENSBMSG00010018851) ZNF428 (ENSBMSG00010018837) CADM4 (ENSBMSG00010018803) PLAUR (ENSBMSG00010018727) SMG9 (ENSBMSG00010018658) KCNN4 (ENSBMSG00010018610) LYPD5 (ENSBMSG00010018589) ENSBMSG00010018533 ENSBMSG00010018502 ENSBMSG00010018418 ZNF404 (ENSBMSG00010018387) ZNF45 (ENSBMSG00010018363) ENSBMSG00010018339 ZNF227 (ENSBMSG00010018318) ZNF233 (ENSBMSG00010018274) ENSBMSG00010018200 #22 ZNF235 (ENSBMSG00010018150) ZNF112 (ENSBMSG00010018101) ENSBMSG00010018020 ZNF180 (ENSBMSG00010017984) PVR (ENSBMSG00010017815) ENSBMSG00010017740 CEACAM16 (ENSBMSG00010017706) BCL3 (ENSBMSG00010017643) CBLC (ENSBMSG00010017585) BCAM (ENSBMSG00010017513) NECTIN2 (ENSBMSG00010017417) TOMM40 (ENSBMSG00010017365) APOE (ENSBMSG00010017333) ENSBMSG00010017290 APOC2 (ENSBMSG00010017237) Blue whale MODERN SPECIES 16 ENSBMSG00010002859 KCNIP4 (ENSBMSG00010002394) ADGRA3 (ENSBMSG00010002059) #7 ENSBMSG00010001976 #9 PPARGC1A (ENSBMSG00010001849) #10 DHX15 (ENSBMSG00010001763) #11 CCDC149 (ENSBMSG00010001719) #13 LGI2 (ENSBMSG00010001673) #14 SEPSECS (ENSBMSG00010001650) #15 PI4K2B (ENSBMSG00010001625) #16 ZCCHC4 (ENSBMSG00010001603) #17 ANAPC4 (ENSBMSG00010001569) #18 SLC34A2 (ENSBMSG00010001530) #19 SEL1L3 (ENSBMSG00010001472) #20 SMIM20 (ENSBMSG00010001389) #21 ENSBMSG00010001239 #22 CCKAR (ENSBMSG00010001131) #23 TBC1D19 (ENSBMSG00010001070) #24 ENSBMSG00010001022 STIM2 (ENSBMSG00010000991) #25 ENSBMSG00010000959 PCDH7 (ENSBMSG00010000937) #28 ENSBMSG00010000928 ARAP2 (ENSBMSG00010000782) #31 DTHD1 (ENSBMSG00010000578) #32 ENSBMSG00010000528 ENSBMSG00010000513 NWD2 (ENSBMSG00010000492) #33 C4orf19 (ENSBMSG00010000470) #34 RELL1 (ENSBMSG00010000412) #35 PGM2 (ENSBMSG00010000369) #37 Atlantogenata ANCESTRAL SPECIES 46 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000163662 ENSGT00940000162884 ENSGT00940000162201 Afrotheria ANCESTRAL SPECIES 53 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00940000160197 #31 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000163662 ENSGT00940000162884 ENSGT00940000162201 ENSGT00390000010054.b Afrotheria_a ANCESTRAL SPECIES 50 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00940000160197 #31 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000163662 ENSGT00940000162884 ENSGT00940000162201 ENSGT00390000010054.b Hyrax MODERN SPECIES 5170 RBPJ (ENSPCAG00000003550) #22 Elephant MODERN SPECIES 164 GBA3 (ENSLAFG00000029577) #9 ENSLAFG00000030988 PPARGC1A (ENSLAFG00000012981) #10 DHX15 (ENSLAFG00000005466) #11 SOD3 (ENSLAFG00000022899) #12 CCDC149 (ENSLAFG00000007108) #13 LGI2 (ENSLAFG00000002475) #14 SEPSECS (ENSLAFG00000010804) #15 PI4K2B (ENSLAFG00000012228) #16 ZCCHC4 (ENSLAFG00000012234) #17 ANAPC4 (ENSLAFG00000012242) #18 ENSLAFG00000026426 #19 ENSLAFG00000013325 #19 SEL1L3 (ENSLAFG00000012362) #20 ENSLAFG00000007091 #21 RBPJ (ENSLAFG00000000410) #22 CCKAR (ENSLAFG00000000294) #23 TBC1D19 (ENSLAFG00000009636) #24 STIM2 (ENSLAFG00000003344) #25 PCDH7 (ENSLAFG00000010937) #28 ARAP2 (ENSLAFG00000003991) #31 NWD2 (ENSLAFG00000020908) #33 C4orf19 (ENSLAFG00000030311) #34 RELL1 (ENSLAFG00000016276) #35 PGM2 (ENSLAFG00000005067) #37 TBC1D1 (ENSLAFG00000005076) KLF3 (ENSLAFG00000032166) TLR10 (ENSLAFG00000008544) TLR1 (ENSLAFG00000008549) TLR6 (ENSLAFG00000032091) FAM114A1 (ENSLAFG00000013559) Xenarthra ANCESTRAL SPECIES ENSGT00390000005197.a #22 Sloth MODERN SPECIES 5611 RBPJ (ENSCHOG00000001582) #22 Armadillo MODERN SPECIES 1850 PPARGC1A (ENSDNOG00000041106) #10 DHX15 (ENSDNOG00000014438) #11 SOD3 (ENSDNOG00000024793) #12 CCDC149 (ENSDNOG00000038755) #13 LGI2 (ENSDNOG00000037791) #14 SEPSECS (ENSDNOG00000049494) #15 PI4K2B (ENSDNOG00000044369) #16 ZCCHC4 (ENSDNOG00000004525) #17 ANAPC4 (ENSDNOG00000032226) #18 ENSDNOG00000032662 SLC34A2 (ENSDNOG00000032564) #19 ENSDNOG00000039515 SEL1L3 (ENSDNOG00000004313) #20 ENSDNOG00000043946 #21 ENSDNOG00000043501 RBPJ (ENSDNOG00000035383) #22 Marsupialia ANCESTRAL SPECIES 7 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b.q #19 ENSGT00950000183177.a.a.b.r #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT01030000234945 #29 ENSGT00940000157221 #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000163662 ENSGT00940000162201 Opossum MODERN SPECIES 4 SEPSECS (ENSMODG00000000423) #15 PI4K2B (ENSMODG00000000405) #16 ZCCHC4 (ENSMODG00000000388) #17 ENSMODG00000000363 #18 ENSMODG00000000328 #19 ENSMODG00000049518 #19 ENSMODG00000000304 #19 ENSMODG00000041870 #19 ENSMODG00000025532 #19 ENSMODG00000027534 ENSMODG00000025549 #19 ENSMODG00000042552 #19 ENSMODG00000051279 #19 SEL1L3 (ENSMODG00000000154) #20 SMIM20 (ENSMODG00000000137) #21 RBPJ (ENSMODG00000000129) #22 ENSMODG00000047093 ENSMODG00000039806 CCKAR (ENSMODG00000000113) #23 TBC1D19 (ENSMODG00000000109) #24 STIM2 (ENSMODG00000000083) #25 ENSMODG00000046673 PCDH7 (ENSMODG00000024790) #28 ENSMODG00000047017 ARAP2 (ENSMODG00000020518) #31 DTHD1 (ENSMODG00000020520) #32 ENSMODG00000036956 NWD2 (ENSMODG00000040392) #33 ENSMODG00000020525 #34 RELL1 (ENSMODG00000020526) #35 ENSMODG00000020527 #37 Marsupialia_b ANCESTRAL SPECIES 8 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b.q #19 ENSGT00950000183177.a.a.b.r #19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT01030000234945 #29 ENSGT00940000157221 #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000163662 ENSGT00940000162201 Tasmanian devil MODERN SPECIES 5 SOD3 (ENSSHAG00000010341) #12 CCDC149 (ENSSHAG00000022022) #13 LGI2 (ENSSHAG00000031544) #14 SEPSECS (ENSSHAG00000007001) #15 PI4K2B (ENSSHAG00000031409) #16 ZCCHC4 (ENSSHAG00000004438) #17 ANAPC4 (ENSSHAG00000003402) #18 ENSSHAG00000010251 #19 ENSSHAG00000004649 #19 ENSSHAG00000010890 #19 ENSSHAG00000031795 #19 ENSSHAG00000028205 #19 ENSSHAG00000023004 #19 SEL1L3 (ENSSHAG00000009419) #20 ENSSHAG00000030717 #21 RBPJ (ENSSHAG00000003329) #22 CCKAR (ENSSHAG00000000403) #23 TBC1D19 (ENSSHAG00000009955) #24 STIM2 (ENSSHAG00000008249) #25 ENSSHAG00000023484 PCDH7 (ENSSHAG00000010841) #28 ENSSHAG00000030937 #29 ENSSHAG00000020576 ARAP2 (ENSSHAG00000011185) #31 DTHD1 (ENSSHAG00000010416) #32 NWD2 (ENSSHAG00000005236) #33 ENSSHAG00000002940 #34 RELL1 (ENSSHAG00000023710) #35 PGM2 (ENSSHAG00000005459) #37 TBC1D1 (ENSSHAG00000013165) KLF3 (ENSSHAG00000026965) Diprotodontia ANCESTRAL SPECIES 10 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b.q #19 ENSGT00940000159983 #20 ENSGT00390000002398.a #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000165320 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000163662 ENSGT00940000162201 Wallaby MODERN SPECIES 7611 RBPJ (ENSMEUG00000006588) #22 Diprotodontia_a ANCESTRAL SPECIES 12 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.a.a.b.q #19 ENSGT00940000159983 #20 ENSGT00390000002398.a #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221 #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00950000185589 ENSGT00940000165320 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000163662 koala MODERN SPECIES 2 KCNIP4 (ENSPCIG00000032533) ADGRA3 (ENSPCIG00000003169) #7 GBA3 (ENSPCIG00000031948) #9 PPARGC1A (ENSPCIG00000015835) #10 DHX15 (ENSPCIG00000004023) #11 SOD3 (ENSPCIG00000004032) #12 CCDC149 (ENSPCIG00000004052) #13 LGI2 (ENSPCIG00000004064) #14 SEPSECS (ENSPCIG00000004071) #15 PI4K2B (ENSPCIG00000004075) #16 ZCCHC4 (ENSPCIG00000004082) #17 ANAPC4 (ENSPCIG00000004096) #18 SLC34A2 (ENSPCIG00000010248) #19 SEL1L3 (ENSPCIG00000020485) #20 ENSPCIG00000020488 #21 RBPJ (ENSPCIG00000020491) #22 CCKAR (ENSPCIG00000020497) #23 TBC1D19 (ENSPCIG00000031776) #24 STIM2 (ENSPCIG00000034168) #25 H2AZ1 (ENSPCIG00000027205) ENSPCIG00000032746 PCDH7 (ENSPCIG00000019678) #28 ENSPCIG00000018003 ARAP2 (ENSPCIG00000035555) #31 DTHD1 (ENSPCIG00000006852) #32 ENSPCIG00000006865 ENSPCIG00000034342 ENSPCIG00000033128 #33 ENSPCIG00000027065 #34 RELL1 (ENSPCIG00000025460) #35 PGM2 (ENSPCIG00000020881) #37 Common wonbat MODERN SPECIES 1054 DHX15 (ENSVURG00010004378) #11 ENSVURG00010004425 #12 CCDC149 (ENSVURG00010004454) #13 LGI2 (ENSVURG00010004467) #14 SEPSECS (ENSVURG00010004502) #15 PI4K2B (ENSVURG00010004516) #16 ZCCHC4 (ENSVURG00010004655) #17 ANAPC4 (ENSVURG00010004724) #18 ENSVURG00010004753 ENSVURG00010004760 ENSVURG00010004770 #19 ENSVURG00010004876 #19 ENSVURG00010005005 SEL1L3 (ENSVURG00010005010) #20 ENSVURG00010005042 #21 RBPJ (ENSVURG00010005079) #22 CCKAR (ENSVURG00010005131) #23 TBC1D19 (ENSVURG00010005165) #24 STIM2 (ENSVURG00010005237) #25 ENSVURG00010005715 PCDH7 (ENSVURG00010005757) #28 ARAP2 (ENSVURG00010005816) #31 DTHD1 (ENSVURG00010005897) #32 ENSVURG00010005913 NWD2 (ENSVURG00010005952) #33 ENSVURG00010006035 #34 RELL1 (ENSVURG00010006044) #35 PGM2 (ENSVURG00010006062) #37 TBC1D1 (ENSVURG00010006143) KLF3 (ENSVURG00010006204) TLR10 (ENSVURG00010006211) Platypus MODERN SPECIES 9 KCNIP4 (ENSOANG00000006672) ADGRA3 (ENSOANG00000006677) #7 GBA3 (ENSOANG00000006679) #9 PPARGC1A (ENSOANG00000006680) #10 DHX15 (ENSOANG00000006682) #11 ENSOANG00000038598 #12 CCDC149 (ENSOANG00000006683) #13 LGI2 (ENSOANG00000041994) #14 SEPSECS (ENSOANG00000045251) #15 PI4K2B (ENSOANG00000006681) #16 ZCCHC4 (ENSOANG00000006688) #17 ANAPC4 (ENSOANG00000006689) #18 SLC34A2 (ENSOANG00000006695) #19 SEL1L3 (ENSOANG00000006697) #20 ENSOANG00000037572 #21 RBPJ (ENSOANG00000006699) #22 CCKAR (ENSOANG00000029819) #23 TBC1D19 (ENSOANG00000006700) #24 STIM2 (ENSOANG00000006701) #25 ENSOANG00000039040 #29 PCDH7 (ENSOANG00000036095) #28 ARAP2 (ENSOANG00000010310) #31 NWD2 (ENSOANG00000010313) #33 RELL1 (ENSOANG00000010314) #35 PGM2 (ENSOANG00000010315) #37 TBC1D1 (ENSOANG00000010316) KLF3 (ENSOANG00000047136) ENSOANG00000047464 ENSOANG00000050732 FAM114A1 (ENSOANG00000010319) ENSOANG00000010321 Sauria ANCESTRAL SPECIES 6 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.b ##19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00980000201267 ENSGT00940000177623 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT01030000234945 #29 ENSGT00940000157221.r #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000165320 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT01030000235076 ENSGT00940000157949 ENSGT00940000157456 Lepidosauria ANCESTRAL SPECIES 9 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.b ##19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT01030000234945 #29 ENSGT00940000157221.r #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT01030000235076 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000162201 tuatara MODERN SPECIES 363 RBPJ (ENSSPUG00000003632) #22 CCKAR (ENSSPUG00000003639) #23 TBC1D19 (ENSSPUG00000003661) #24 STIM2 (ENSSPUG00000003819) #25 Episquamata ANCESTRAL SPECIES 3 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.b ##19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT01030000234945 #29 ENSGT00940000157221.r #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000162201 ENSGT00390000010054.b Toxicofera ANCESTRAL SPECIES 21 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.b ##19 ENSGT00940000159983 #20 ENSGT01040000242873 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT01030000234945 #29 ENSGT00940000157221.r #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000162201.c ENSGT00390000010054.b Lizard MODERN SPECIES 962 PI4K2B (ENSACAG00000013530) #16 ZCCHC4 (ENSACAG00000013561) #17 ANAPC4 (ENSACAG00000013604) #18 ENSACAG00000035948 ENSACAG00000014383 ##19 SEL1L3 (ENSACAG00000014494) #20 ENSACAG00000014567 RBPJ (ENSACAG00000014578) #22 CCKAR (ENSACAG00000014635) #23 TBC1D19 (ENSACAG00000014660) #24 STIM2 (ENSACAG00000014755) #25 Elapidae ANCESTRAL SPECIES 22 ENSGT00960000189468 ENSGT00390000013532.q ENSGT01060000251732 ENSGT00940000153284.b ENSGT00940000158643 ENSGT00390000011192 ENSGT00940000162578 ENSGT00940000158757 ENSGT00390000003601.b ENSGT00940000156043 ENSGT00940000156021 ENSGT00940000155626 ENSGT00940000156710 ENSGT00940000177623 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221.r #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000162201.c ENSGT00390000010054.b ENSGT00940000155358 Indian cobra MODERN SPECIES 3 ENSNNAG00000014290 ENSNNAG00000014270 ENSNNAG00000014256 USP46 (ENSNNAG00000014235) ENSNNAG00000014225 RASL11B (ENSNNAG00000014208) SCFD2 (ENSNNAG00000014166) ENSNNAG00000014116 LNX1 (ENSNNAG00000014069) CHIC2 (ENSNNAG00000014042) GSX2 (ENSNNAG00000014028) PDGFRA (ENSNNAG00000010974) KIT (ENSNNAG00000008242) KDR (ENSNNAG00000007823) ENSNNAG00000007785 RBPJ (ENSNNAG00000007657) #22 CCKAR (ENSNNAG00000007585) #23 TBC1D19 (ENSNNAG00000007498) #24 STIM2 (ENSNNAG00000007431) #25 ENSNNAG00000007417 ENSNNAG00000007402 #29 PCDH7 (ENSNNAG00000007378) #28 ENSNNAG00000007360 ENSNNAG00000007348 DTHD1 (ENSNNAG00000007301) #32 NWD2 (ENSNNAG00000007268) #33 RELL1 (ENSNNAG00000007248) #35 PGM2 (ENSNNAG00000007219) #37 TBC1D1 (ENSNNAG00000005416) KLF3 (ENSNNAG00000005269) TLR6 (ENSNNAG00000005256) Elapidae_a ANCESTRAL SPECIES 25 ENSGT00960000189468 ENSGT00390000013532.q ENSGT01060000251732 ENSGT00940000153284.b ENSGT00940000158643 ENSGT00390000011192.e ENSGT00940000162578 ENSGT00940000158757 ENSGT00390000003601.b ENSGT00940000156043 ENSGT00940000156021 ENSGT00940000155626 ENSGT00940000156710 ENSGT00940000177623 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221.r #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247.r #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000162201.c ENSGT00390000010054.b ENSGT00940000155358 Blue-lipped sea krait MODERN SPECIES 3433 RBPJ (ENSLLTG00000005876) #22 Acanthophiinae ANCESTRAL SPECIES 4 ENSGT00960000189468 ENSGT00390000013532.q ENSGT01060000251732 ENSGT00940000153284.b ENSGT00940000158643 ENSGT00390000011192.e ENSGT00940000162578 ENSGT00940000158757 ENSGT00390000003601.b ENSGT00940000156043 ENSGT00940000156021 ENSGT00940000155626 ENSGT00940000156710 ENSGT00940000177623 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221.r #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247.r #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000162201.c ENSGT00390000010054.b ENSGT00940000155358 Eastern brown snake MODERN SPECIES 12 DCUN1D4 (ENSPTXG00000005914) SGCB (ENSPTXG00000005913) ENSPTXG00000005912 ENSPTXG00000005911 USP46 (ENSPTXG00000005910) RASL11B (ENSPTXG00000005909) SCFD2 (ENSPTXG00000005906) ENSPTXG00000005905 LNX1 (ENSPTXG00000005286) CHIC2 (ENSPTXG00000005285) GSX2 (ENSPTXG00000005284) PDGFRA (ENSPTXG00000005108) KIT (ENSPTXG00000004726) KDR (ENSPTXG00000004719) ENSPTXG00000004718 RBPJ (ENSPTXG00000004716) #22 CCKAR (ENSPTXG00000004707) #23 TBC1D19 (ENSPTXG00000004706) #24 STIM2 (ENSPTXG00000004705) #25 PCDH7 (ENSPTXG00000004704) #28 ARAP2 (ENSPTXG00000004702) #31 DTHD1 (ENSPTXG00000004701) #32 NWD2 (ENSPTXG00000004699) #33 ENSPTXG00000004697 #34 RELL1 (ENSPTXG00000004695) #35 PGM2 (ENSPTXG00000004690) #37 TBC1D1 (ENSPTXG00000003167) KLF3 (ENSPTXG00000003142) TLR6 (ENSPTXG00000003138) FAM114A1 (ENSPTXG00000003136) ENSPTXG00000003133 Mainland tiger snake MODERN SPECIES 367 SMIM20 (ENSNSUG00000011023) #21 RBPJ (ENSNSUG00000011022) #22 ENSNSUG00000011020 CCKAR (ENSNSUG00000010999) #23 TBC1D19 (ENSNSUG00000010844) #24 STIM2 (ENSNSUG00000010832) #25 Laterata ANCESTRAL SPECIES 21 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.b ##19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221.r #28 ENSGT01030000234945 #29 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000162201 ENSGT00390000010054.b Argentine black and white tegu MODERN SPECIES 1 KCNIP4 (ENSSMRG00000001469) ADGRA3 (ENSSMRG00000001520) #7 GBA3 (ENSSMRG00000001542) #9 PPARGC1A (ENSSMRG00000001615) #10 DHX15 (ENSSMRG00000001639) #11 SOD3 (ENSSMRG00000001656) #12 CCDC149 (ENSSMRG00000001694) #13 LGI2 (ENSSMRG00000001701) #14 SEPSECS (ENSSMRG00000001718) #15 PI4K2B (ENSSMRG00000001725) #16 ZCCHC4 (ENSSMRG00000001737) #17 ANAPC4 (ENSSMRG00000001814) #18 ENSSMRG00000001828 ##19 SEL1L3 (ENSSMRG00000001883) #20 SMIM20 (ENSSMRG00000001898) #21 RBPJ (ENSSMRG00000001903) #22 CCKAR (ENSSMRG00000001920) #23 TBC1D19 (ENSSMRG00000001948) #24 STIM2 (ENSSMRG00000001982) #25 ENSSMRG00000002078 ENSSMRG00000002157 PCDH7 (ENSSMRG00000002175) #28 ENSSMRG00000002180 ARAP2 (ENSSMRG00000002189) #31 DTHD1 (ENSSMRG00000002220) #32 NWD2 (ENSSMRG00000002231) #33 ENSSMRG00000002251 #34 RELL1 (ENSSMRG00000002260) #35 PGM2 (ENSSMRG00000002267) #37 TBC1D1 (ENSSMRG00000002348) KLF3 (ENSSMRG00000002464) Common wall lizard MODERN SPECIES 17 SOD3 (ENSPMRG00000012656) #12 CCDC149 (ENSPMRG00000012672) #13 ENSPMRG00000012712 #14 ENSPMRG00000012716 ENSPMRG00000012723 #14 ENSPMRG00000012728 SEPSECS (ENSPMRG00000012735) #15 PI4K2B (ENSPMRG00000012743) #16 ZCCHC4 (ENSPMRG00000012751) #17 ANAPC4 (ENSPMRG00000012834) #18 ENSPMRG00000013386 ENSPMRG00000013390 ##19 SEL1L3 (ENSPMRG00000013412) #20 ENSPMRG00000013495 ENSPMRG00000013498 RBPJ (ENSPMRG00000013511) #22 CCKAR (ENSPMRG00000013536) #23 TBC1D19 (ENSPMRG00000013570) #24 STIM2 (ENSPMRG00000013643) #25 ENSPMRG00000013648 PCDH7 (ENSPMRG00000013653) #28 ENSPMRG00000013659 #29 ENSPMRG00000013663 ENSPMRG00000013667 ENSPMRG00000013671 ARAP2 (ENSPMRG00000013685) #31 ENSPMRG00000013752 DTHD1 (ENSPMRG00000013757) #32 ENSPMRG00000013760 ENSPMRG00000013775 ENSPMRG00000013784 #33 Archelosauria ANCESTRAL SPECIES 4 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.b ##19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00980000201267 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT01030000234945 #29 ENSGT00940000157221.r #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000165320 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT01030000235076 ENSGT00940000157949 ENSGT00940000157456 Archosauria ANCESTRAL SPECIES 1 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.b ##19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00980000201267 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT01030000234945 #29 ENSGT00940000157221.r #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000165320 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000162201 Australian saltwater crocodile MODERN SPECIES 65 ENSCPRG00005004791 ADGRA3 (ENSCPRG00005004846) #7 PPARGC1A (ENSCPRG00005004873) #10 ENSCPRG00005004898 DHX15 (ENSCPRG00005004902) #11 SOD3 (ENSCPRG00005004903) #12 CCDC149 (ENSCPRG00005004911) #13 LGI2 (ENSCPRG00005004932) #14 SEPSECS (ENSCPRG00005004978) #15 PI4K2B (ENSCPRG00005004981) #16 ZCCHC4 (ENSCPRG00005004986) #17 ANAPC4 (ENSCPRG00005005005) #18 ENSCPRG00005005064 ##19 SEL1L3 (ENSCPRG00005005084) #20 SMIM20 (ENSCPRG00005005197) #21 RBPJ (ENSCPRG00005005213) #22 CCKAR (ENSCPRG00005005217) #23 TBC1D19 (ENSCPRG00005005240) #24 STIM2 (ENSCPRG00005005298) #25 PCDH7 (ENSCPRG00005005388) #28 RPS29 (ENSCPRG00005005404) ENSCPRG00005005412 TIMM17B (ENSCPRG00005005430) ARAP2 (ENSCPRG00005005447) #31 DTHD1 (ENSCPRG00005005494) #32 NWD2 (ENSCPRG00005005535) #33 C4orf19 (ENSCPRG00005005560) #34 RELL1 (ENSCPRG00005005574) #35 PGM2 (ENSCPRG00005005602) #37 TBC1D1 (ENSCPRG00005005626) KLF3 (ENSCPRG00005005693) Aves ANCESTRAL SPECIES 3 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.b ##19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00980000201267 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT01030000234945 #29 ENSGT00940000157221.r #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000165320 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000162201.j African ostrich MODERN SPECIES 548 PACRGL (ENSSCUG00000006427) KCNIP4 (ENSSCUG00000006432) ADGRA3 (ENSSCUG00000006446) #7 GBA3 (ENSSCUG00000006451) #9 PPARGC1A (ENSSCUG00000006459) #10 DHX15 (ENSSCUG00000006468) #11 SOD3 (ENSSCUG00000006470) #12 CCDC149 (ENSSCUG00000006474) #13 LGI2 (ENSSCUG00000006480) #14 SEPSECS (ENSSCUG00000006488) #15 PI4K2B (ENSSCUG00000006495) #16 ZCCHC4 (ENSSCUG00000006498) #17 ANAPC4 (ENSSCUG00000006515) #18 ENSSCUG00000006534 ##19 SEL1L3 (ENSSCUG00000006536) #20 RBPJ (ENSSCUG00000006539) #22 CCKAR (ENSSCUG00000006541) #23 TBC1D19 (ENSSCUG00000006542) #24 STIM2 (ENSSCUG00000006544) #25 PCDH7 (ENSSCUG00000006563) #28 ENSSCUG00000006572 ARAP2 (ENSSCUG00000006577) #31 DTHD1 (ENSSCUG00000006590) #32 NWD2 (ENSSCUG00000006593) #33 C4orf19 (ENSSCUG00000006603) #34 RELL1 (ENSSCUG00000006607) #35 PGM2 (ENSSCUG00000006613) #37 TBC1D1 (ENSSCUG00000006618) KLF3 (ENSSCUG00000006627) ENSSCUG00000006629 FAM114A1 (ENSSCUG00000006635) Neognathae ANCESTRAL SPECIES 5 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.b ##19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00980000201267 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT01030000234945 #29 ENSGT00940000157221.r #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000165320 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000162201.j Galloanserae ANCESTRAL SPECIES 5 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.b ##19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221.r #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000165320 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000162201.j ENSGT00940000162201.i Phasianidae ANCESTRAL SPECIES 2 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.b ##19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221.r #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000165320 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000162201.j ENSGT00940000162201.i Japanese quail MODERN SPECIES 22 KCNIP4 (ENSCJPG00005018389) ADGRA3 (ENSCJPG00005018386) #7 PPARGC1A (ENSCJPG00005018379) #10 DHX15 (ENSCJPG00005018376) #11 SOD3 (ENSCJPG00005018375) #12 CCDC149 (ENSCJPG00005018374) #13 LGI2 (ENSCJPG00005018373) #14 ENSCJPG00005018372 SEPSECS (ENSCJPG00005018371) #15 PI4K2B (ENSCJPG00005018370) #16 ZCCHC4 (ENSCJPG00005018369) #17 ANAPC4 (ENSCJPG00005018368) #18 ENSCJPG00005018366 ##19 SEL1L3 (ENSCJPG00005018359) #20 SMIM20 (ENSCJPG00005018355) #21 RBPJ (ENSCJPG00005018352) #22 CCKAR (ENSCJPG00005018351) #23 TBC1D19 (ENSCJPG00005018350) #24 STIM2 (ENSCJPG00005018349) #25 PCDH7 (ENSCJPG00005018339) #28 ARAP2 (ENSCJPG00005018329) #31 DTHD1 (ENSCJPG00005018328) #32 NWD2 (ENSCJPG00005018327) #33 C4orf19 (ENSCJPG00005018326) #34 RELL1 (ENSCJPG00005018325) #35 PGM2 (ENSCJPG00005018323) #37 TBC1D1 (ENSCJPG00005018321) KLF3 (ENSCJPG00005018317) TLR6 (ENSCJPG00005018284) FAM114A1 (ENSCJPG00005018282) KLHL5 (ENSCJPG00005018217) Phasianidae_b ANCESTRAL SPECIES 4 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.b ##19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221.r #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000165320 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000162201.j ENSGT00940000162201.i Chicken MODERN SPECIES 33 ADGRA3 (ENSGALG00010009200) #7 ENSGALG00010010027 #9 PPARGC1A (ENSGALG00010010006) #10 DHX15 (ENSGALG00010009943) #11 SOD3 (ENSGALG00010009833) #12 CCDC149 (ENSGALG00010009728) #13 LGI2 (ENSGALG00010010178) #14 ENSGALG00010010175 SEPSECS (ENSGALG00010010161) #15 PI4K2B (ENSGALG00010010945) #16 ZCCHC4 (ENSGALG00010010939) #17 ANAPC4 (ENSGALG00010010933) #18 SLC34A2 (ENSGALG00010010900) ##19 SEL1L3 (ENSGALG00010010857) #20 SMIM20 (ENSGALG00010010853) #21 RBPJ (ENSGALG00010010837) #22 CCKAR (ENSGALG00010010732) #23 TBC1D19 (ENSGALG00010010722) #24 STIM2 (ENSGALG00010010685) #25 PCDH7 (ENSGALG00010009266) #28 ENSGALG00010011667 ENSGALG00010014270 ARAP2 (ENSGALG00010014705) #31 DTHD1 (ENSGALG00010014681) #32 NWD2 (ENSGALG00010014632) #33 C4orf19 (ENSGALG00010014455) #34 RELL1 (ENSGALG00010015353) #35 PGM2 (ENSGALG00010015310) #37 TBC1D1 (ENSGALG00010015200) KLF3 (ENSGALG00010015165) TLR1A (ENSGALG00010015119) Turkey MODERN SPECIES 24 PACRGL (ENSMGAG00000012511) KCNIP4 (ENSMGAG00000012506) ADGRA3 (ENSMGAG00000012495) #7 PPARGC1A (ENSMGAG00000012485) #10 DHX15 (ENSMGAG00000012477) #11 SOD3 (ENSMGAG00000012473) #12 CCDC149 (ENSMGAG00000012469) #13 LGI2 (ENSMGAG00000012466) #14 SEPSECS (ENSMGAG00000012465) #15 PI4K2B (ENSMGAG00000012457) #16 ZCCHC4 (ENSMGAG00000012455) #17 ANAPC4 (ENSMGAG00000012445) #18 ENSMGAG00000012440 ##19 SEL1L3 (ENSMGAG00000012431) #20 SMIM20 (ENSMGAG00000018966) #21 RBPJ (ENSMGAG00000012418) #22 CCKAR (ENSMGAG00000012415) #23 TBC1D19 (ENSMGAG00000012405) #24 STIM2 (ENSMGAG00000012398) #25 PCDH7 (ENSMGAG00000010521) #28 ARAP2 (ENSMGAG00000012390) #31 DTHD1 (ENSMGAG00000012392) #32 ENSMGAG00000017111 NWD2 (ENSMGAG00000012386) #33 C4orf19 (ENSMGAG00000012379) #34 RELL1 (ENSMGAG00000012380) #35 PGM2 (ENSMGAG00000012371) #37 TBC1D1 (ENSMGAG00000012368) KLF3 (ENSMGAG00000012365) ENSMGAG00000020268 ENSMGAG00000015741 Anatidae ANCESTRAL SPECIES 2 ENSGT00940000159756 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.b ##19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221.r #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000162201.j ENSGT00940000162201.i ENSGT00390000010054.b Pink-footed goose MODERN SPECIES 57 KCNIP4 (ENSABRG00000014740) ADGRA3 (ENSABRG00000014750) #7 ENSABRG00000014762 PPARGC1A (ENSABRG00000014767) #10 DHX15 (ENSABRG00000014781) #11 SOD3 (ENSABRG00000014787) #12 CCDC149 (ENSABRG00000014788) #13 LGI2 (ENSABRG00000014793) #14 SEPSECS (ENSABRG00000014796) #15 PI4K2B (ENSABRG00000014824) #16 ZCCHC4 (ENSABRG00000014832) #17 ANAPC4 (ENSABRG00000014877) #18 ENSABRG00000015346 ##19 SEL1L3 (ENSABRG00000015358) #20 ENSABRG00000015367 #21 RBPJ (ENSABRG00000015380) #22 CCKAR (ENSABRG00000015392) #23 Duck MODERN SPECIES 22 PACRGL (ENSAPLG00000009745) KCNIP4 (ENSAPLG00000009534) ADGRA3 (ENSAPLG00000009086) #7 PPARGC1A (ENSAPLG00000005303) #10 DHX15 (ENSAPLG00000005889) #11 SOD3 (ENSAPLG00000001811) #12 CCDC149 (ENSAPLG00000010671) #13 LGI2 (ENSAPLG00000019636) #14 SEPSECS (ENSAPLG00000009962) #15 PI4K2B (ENSAPLG00000009723) #16 ZCCHC4 (ENSAPLG00000009717) #17 ENSAPLG00000016667 #18 ENSAPLG00000008254 ##19 SEL1L3 (ENSAPLG00000007928) #20 SMIM20 (ENSAPLG00000026829) #21 RBPJ (ENSAPLG00000007512) #22 ENSAPLG00000020697 CCKAR (ENSAPLG00000025740) #23 TBC1D19 (ENSAPLG00000007019) #24 STIM2 (ENSAPLG00000006859) #25 ENSAPLG00000024292 ENSAPLG00000026215 ENSAPLG00000030723 #29 PCDH7 (ENSAPLG00000027438) #28 ARAP2 (ENSAPLG00000013894) #31 DTHD1 (ENSAPLG00000014119) #32 NWD2 (ENSAPLG00000004933) #33 C4orf19 (ENSAPLG00000027520) #34 RELL1 (ENSAPLG00000008800) #35 PGM2 (ENSAPLG00000008271) #37 TBC1D1 (ENSAPLG00000007546) Neognathae_b ANCESTRAL SPECIES 4 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.b ##19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00980000201267 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT01030000234945 #29 ENSGT00940000157221.r #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000162201.j ENSGT00940000162201.i Passeriformes ANCESTRAL SPECIES 4 ENSGT00940000159756 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.b ##19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT01030000234945 #29 ENSGT00940000157221.r #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000162201.j ENSGT00940000162201.i Great tit MODERN SPECIES 23 SLIT2 (ENSPMJG00000016326) PACRGL (ENSPMJG00000016324) KCNIP4 (ENSPMJG00000016323) ADGRA3 (ENSPMJG00000016320) #7 PPARGC1A (ENSPMJG00000016314) #10 DHX15 (ENSPMJG00000016312) #11 SOD3 (ENSPMJG00000016311) #12 CCDC149 (ENSPMJG00000016310) #13 LGI2 (ENSPMJG00000016309) #14 PI4K2B (ENSPMJG00000016308) #16 ZCCHC4 (ENSPMJG00000016307) #17 ANAPC4 (ENSPMJG00000016306) #18 ENSPMJG00000016305 ##19 SEL1L3 (ENSPMJG00000016304) #20 SMIM20 (ENSPMJG00000016303) #21 RBPJ (ENSPMJG00000016301) #22 CCKAR (ENSPMJG00000016300) #23 TBC1D19 (ENSPMJG00000016299) #24 STIM2 (ENSPMJG00000016298) #25 ENSPMJG00000016294 #29 PCDH7 (ENSPMJG00000016293) #28 ARAP2 (ENSPMJG00000016289) #31 NWD2 (ENSPMJG00000016287) #33 C4orf19 (ENSPMJG00000016285) #34 RELL1 (ENSPMJG00000016284) #35 PGM2 (ENSPMJG00000016283) #37 TBC1D1 (ENSPMJG00000016282) KLF3 (ENSPMJG00000016275) ENSPMJG00000016274 ENSPMJG00000016273 FAM114A1 (ENSPMJG00000016272) Passeriformes_d ANCESTRAL SPECIES 4 ENSGT00940000159756 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.b ##19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT01030000234945 #29 ENSGT00940000157221.r #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000162201.j ENSGT00940000162201.i Flycatcher MODERN SPECIES 22 SLIT2 (ENSFALG00000009223) PACRGL (ENSFALG00000009221) KCNIP4 (ENSFALG00000009214) ADGRA3 (ENSFALG00000009212) #7 PPARGC1A (ENSFALG00000009211) #10 DHX15 (ENSFALG00000009210) #11 SOD3 (ENSFALG00000014662) #12 CCDC149 (ENSFALG00000009207) #13 LGI2 (ENSFALG00000024523) #14 SEPSECS (ENSFALG00000009193) #15 PI4K2B (ENSFALG00000009183) #16 ANAPC4 (ENSFALG00000009180) #18 ENSFALG00000009167 ##19 SEL1L3 (ENSFALG00000009157) #20 SMIM20 (ENSFALG00000009156) #21 RBPJ (ENSFALG00000028202) #22 CCKAR (ENSFALG00000009150) #23 TBC1D19 (ENSFALG00000009147) #24 STIM2 (ENSFALG00000009145) #25 ENSFALG00000024970 #29 PCDH7 (ENSFALG00000009140) #28 ENSFALG00000028447 #28 ENSFALG00000009389 ARAP2 (ENSFALG00000009360) #31 NWD2 (ENSFALG00000009352) #33 ENSFALG00000026554 #34 RELL1 (ENSFALG00000026363) #35 PGM2 (ENSFALG00000009335) #37 TBC1D1 (ENSFALG00000009329) KLF3 (ENSFALG00000023461) ENSFALG00000014902 Passeriformes_g ANCESTRAL SPECIES 5 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00950000183137.b.a.a #10 ENSGT00950000183137.b.a.b #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.b ##19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT01030000234945 #29 ENSGT00940000157221.r #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000162201.j ENSGT00940000162201.i Medium ground finch MODERN SPECIES KCNIP4 (ENSGFOG00000001224) ADGRA3 (ENSGFOG00000001255) #7 ENSGFOG00000001383 #10 ENSGFOG00000001391 #10 DHX15 (ENSGFOG00000001405) #11 SOD3 (ENSGFOG00000001424) #12 CCDC149 (ENSGFOG00000001434) #13 LGI2 (ENSGFOG00000001453) #14 SEPSECS (ENSGFOG00000001468) #15 PI4K2B (ENSGFOG00000001541) #16 ZCCHC4 (ENSGFOG00000001560) #17 ANAPC4 (ENSGFOG00000001587) #18 ENSGFOG00000001618 ##19 SEL1L3 (ENSGFOG00000001635) #20 ENSGFOG00000001653 RBPJ (ENSGFOG00000001663) #22 CCKAR (ENSGFOG00000001670) #23 TBC1D19 (ENSGFOG00000001691) #24 STIM2 (ENSGFOG00000001728) #25 PCDH7 (ENSGFOG00000001767) #28 ARAP2 (ENSGFOG00000001784) #31 NWD2 (ENSGFOG00000001843) #33 ENSGFOG00000001851 #34 RELL1 (ENSGFOG00000001863) #35 PGM2 (ENSGFOG00000001868) #37 TBC1D1 (ENSGFOG00000001882) KLF3 (ENSGFOG00000001925) ENSGFOG00000001932 ENSGFOG00000001940 ENSGFOG00000001947 KLHL5 (ENSGFOG00000001967) Passeroidea ANCESTRAL SPECIES 4 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00950000183137.b.a.a #10 ENSGT00950000183137.b.a.b #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.b ##19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT01030000234945 #29 ENSGT00940000157221.r #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000162201.j ENSGT00940000162201.i Zebra finch MODERN SPECIES 25 PACRGL (ENSTGUG00000009573) KCNIP4 (ENSTGUG00000009548) ADGRA3 (ENSTGUG00000009517) #7 PPARGC1A (ENSTGUG00000009487) #10 DHX15 (ENSTGUG00000009452) #11 SOD3 (ENSTGUG00000009451) #12 CCDC149 (ENSTGUG00000009438) #13 LGI2 (ENSTGUG00000021263) #14 SEPSECS (ENSTGUG00000009417) #15 PI4K2B (ENSTGUG00000009404) #16 ZCCHC4 (ENSTGUG00000009397) #17 ANAPC4 (ENSTGUG00000009328) #18 ENSTGUG00000009289 ##19 SEL1L3 (ENSTGUG00000009265) #20 SMIM20 (ENSTGUG00000009263) #21 RBPJ (ENSTGUG00000009245) #22 CCKAR (ENSTGUG00000009230) #23 TBC1D19 (ENSTGUG00000009193) #24 STIM2 (ENSTGUG00000009177) #25 ENSTGUG00000025253 PCDH7 (ENSTGUG00000009172) #28 ENSTGUG00000028708 #29 ARAP2 (ENSTGUG00000009152) #31 DTHD1 (ENSTGUG00000009149) #32 NWD2 (ENSTGUG00000009144) #33 C4orf19 (ENSTGUG00000020799) #34 RELL1 (ENSTGUG00000009141) #35 PGM2 (ENSTGUG00000009108) #37 TBC1D1 (ENSTGUG00000009056) KLF3 (ENSTGUG00000009046) ENSTGUG00000027436 Common canary MODERN SPECIES 2 PACRGL (ENSSCAG00000004596) KCNIP4 (ENSSCAG00000004606) ADGRA3 (ENSSCAG00000004631) #7 PPARGC1A (ENSSCAG00000004681) #10 DHX15 (ENSSCAG00000004696) #11 SOD3 (ENSSCAG00000004707) #12 CCDC149 (ENSSCAG00000004710) #13 LGI2 (ENSSCAG00000004718) #14 SEPSECS (ENSSCAG00000004722) #15 PI4K2B (ENSSCAG00000004729) #16 ZCCHC4 (ENSSCAG00000004739) #17 ANAPC4 (ENSSCAG00000004765) #18 ENSSCAG00000004791 ##19 SEL1L3 (ENSSCAG00000004798) #20 SMIM20 (ENSSCAG00000004809) #21 RBPJ (ENSSCAG00000004817) #22 CCKAR (ENSSCAG00000004827) #23 TBC1D19 (ENSSCAG00000004860) #24 STIM2 (ENSSCAG00000004950) #25 ENSSCAG00000005042 #29 PCDH7 (ENSSCAG00000005046) #28 ARAP2 (ENSSCAG00000005112) #31 DTHD1 (ENSSCAG00000005246) #32 ENSSCAG00000005268 ENSSCAG00000005284 NWD2 (ENSSCAG00000005289) #33 C4orf19 (ENSSCAG00000005294) #34 RELL1 (ENSSCAG00000005297) #35 PGM2 (ENSSCAG00000005299) #37 TBC1D1 (ENSSCAG00000005305) KLF3 (ENSSCAG00000005339) Neognathae_c ANCESTRAL SPECIES 3 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.b ##19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00980000201267 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00940000157221.r #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000162201.j ENSGT00940000162201.i ENSGT00990000210295 Kakapo MODERN SPECIES 24 ENSSHBG00005017723 PPARGC1A (ENSSHBG00005017729) #10 DHX15 (ENSSHBG00005017735) #11 SOD3 (ENSSHBG00005017737) #12 CCDC149 (ENSSHBG00005017766) #13 LGI2 (ENSSHBG00005017808) #14 SEPSECS (ENSSHBG00005017996) #15 PI4K2B (ENSSHBG00005018001) #16 ZCCHC4 (ENSSHBG00005018004) #17 ENSSHBG00005018011 #18 ENSSHBG00005018018 #18 ENSSHBG00005018026 ##19 SEL1L3 (ENSSHBG00005018031) #20 ENSSHBG00005018035 #21 ENSSHBG00005018043 RBPJ (ENSSHBG00005018048) #22 CCKAR (ENSSHBG00005018052) #23 TBC1D19 (ENSSHBG00005018056) #24 STIM2 (ENSSHBG00005018062) #25 ENSSHBG00005018070 PCDH7 (ENSSHBG00005018087) #28 DTHD1 (ENSSHBG00005018104) #32 NWD2 (ENSSHBG00005018109) #33 C4orf19 (ENSSHBG00005018114) #34 RELL1 (ENSSHBG00005018119) #35 PGM2 (ENSSHBG00005018123) #37 TBC1D1 (ENSSHBG00005018155) KLF3 (ENSSHBG00005018273) TLR6 (ENSSHBG00005000935) ENSSHBG00005000955 ENSSHBG00005000963 Golden eagle MODERN SPECIES PACRGL (ENSACCG00020000198) KCNIP4 (ENSACCG00020000199) ADGRA3 (ENSACCG00020000200) #7 PPARGC1A (ENSACCG00020000201) #10 DHX15 (ENSACCG00020000202) #11 SOD3 (ENSACCG00020000203) #12 CCDC149 (ENSACCG00020000204) #13 LGI2 (ENSACCG00020000205) #14 SEPSECS (ENSACCG00020000206) #15 PI4K2B (ENSACCG00020000207) #16 ZCCHC4 (ENSACCG00020000208) #17 ANAPC4 (ENSACCG00020000209) #18 ENSACCG00020000210 ##19 SEL1L3 (ENSACCG00020000211) #20 SMIM20 (ENSACCG00020000212) #21 RBPJ (ENSACCG00020000213) #22 CCKAR (ENSACCG00020000214) #23 TBC1D19 (ENSACCG00020000215) #24 STIM2 (ENSACCG00020000216) #25 ENSACCG00020000217 ENSACCG00020000218 #28 ENSACCG00020000219 #28 ARAP2 (ENSACCG00020000221) #31 DTHD1 (ENSACCG00020000222) #32 NWD2 (ENSACCG00020000223) #33 C4orf19 (ENSACCG00020000224) #34 RELL1 (ENSACCG00020000225) #35 PGM2 (ENSACCG00020000226) #37 TBC1D1 (ENSACCG00020000227) KLF3 (ENSACCG00020000228) ENSACCG00020000229 Cryptodira ANCESTRAL SPECIES 2 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.b ##19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT01030000234945 #29 ENSGT00940000157221.r #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000165320 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT01030000235076 ENSGT00940000157949 ENSGT00940000157456 Chinese turtle MODERN SPECIES 2222 GBA3 (ENSPSIG00000011741) #9 PPARGC1A (ENSPSIG00000011790) #10 DHX15 (ENSPSIG00000013524) #11 SOD3 (ENSPSIG00000014347) #12 CCDC149 (ENSPSIG00000014502) #13 LGI2 (ENSPSIG00000014639) #14 SEPSECS (ENSPSIG00000014906) #15 PI4K2B (ENSPSIG00000015479) #16 ZCCHC4 (ENSPSIG00000015625) #17 ANAPC4 (ENSPSIG00000015647) #18 ENSPSIG00000016305 ##19 ENSPSIG00000016641 #20 ENSPSIG00000016650 #20 ENSPSIG00000000844 SMIM20 (ENSPSIG00000016781) #21 RBPJ (ENSPSIG00000016822) #22 CCKAR (ENSPSIG00000016827) #23 TBC1D19 (ENSPSIG00000017104) #24 STIM2 (ENSPSIG00000017515) #25 ENSPSIG00000000850 ENSPSIG00000006788 #28 ENSPSIG00000000857 #28 ENSPSIG00000006830 ABCG8 (ENSPSIG00000007213) ABCG5 (ENSPSIG00000010209) DYNC2LI1 (ENSPSIG00000010815) PLEKHH2 (ENSPSIG00000011173) THADA (ENSPSIG00000011388) ENSPSIG00000017136 Testudinoidea ANCESTRAL SPECIES 10 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.b ##19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT01030000234945 #29 ENSGT00940000157221.r #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000165320 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT01030000235076 ENSGT00940000157949 ENSGT00940000157456 Emydidae ANCESTRAL SPECIES 1 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.b ##19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT01030000234945 #29 ENSGT00940000157221.r #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000165320 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT00940000157949 ENSGT00940000157456 ENSGT00940000162201.l painted turtle MODERN SPECIES 15 KCNIP4 (ENSCPBG00000027922) ADGRA3 (ENSCPBG00000027926) #7 GBA3 (ENSCPBG00000027931) #9 PPARGC1A (ENSCPBG00000027936) #10 DHX15 (ENSCPBG00000027946) #11 SOD3 (ENSCPBG00000027950) #12 CCDC149 (ENSCPBG00000027952) #13 LGI2 (ENSCPBG00000027955) #14 SEPSECS (ENSCPBG00000027958) #15 PI4K2B (ENSCPBG00000027959) #16 ZCCHC4 (ENSCPBG00000027961) #17 ANAPC4 (ENSCPBG00000027964) #18 ENSCPBG00000027967 ##19 SEL1L3 (ENSCPBG00000027969) #20 SMIM20 (ENSCPBG00000027970) #21 RBPJ (ENSCPBG00000027973) #22 CCKAR (ENSCPBG00000027976) #23 TBC1D19 (ENSCPBG00000027982) #24 STIM2 (ENSCPBG00000027991) #25 ENSCPBG00000027993 ENSCPBG00000027995 PCDH7 (ENSCPBG00000028002) #28 ENSCPBG00000028004 ANO5 (ENSCPBG00000028008) ENSCPBG00000028010 SLC17A6 (ENSCPBG00000028011) FANCF (ENSCPBG00000028012) GAS2 (ENSCPBG00000028013) LUZP2 (ENSCPBG00000028015) ANO3 (ENSCPBG00000028019) MUC15 (ENSCPBG00000028023) Three-toed box turtle MODERN SPECIES 26 KCNIP4 (ENSTMTG00000002466) ADGRA3 (ENSTMTG00000002458) #7 GBA3 (ENSTMTG00000002452) #9 PPARGC1A (ENSTMTG00000002447) #10 DHX15 (ENSTMTG00000002439) #11 SOD3 (ENSTMTG00000002436) #12 CCDC149 (ENSTMTG00000002431) #13 LGI2 (ENSTMTG00000002426) #14 SEPSECS (ENSTMTG00000002424) #15 PI4K2B (ENSTMTG00000002417) #16 ZCCHC4 (ENSTMTG00000002410) #17 ANAPC4 (ENSTMTG00000002376) #18 ENSTMTG00000002359 ##19 SEL1L3 (ENSTMTG00000002230) #20 ENSTMTG00000002188 RBPJ (ENSTMTG00000002176) #22 CCKAR (ENSTMTG00000002168) #23 TBC1D19 (ENSTMTG00000002117) #24 STIM2 (ENSTMTG00000002059) #25 ENSTMTG00000002043 #29 ENSTMTG00000002037 #28 ENSTMTG00000002030 #28 ENSTMTG00000002023 ENSTMTG00000002014 ENSTMTG00000002010 ARAP2 (ENSTMTG00000001989) #31 DTHD1 (ENSTMTG00000001942) #32 ENSTMTG00000001921 NWD2 (ENSTMTG00000001912) #33 C4orf19 (ENSTMTG00000001898) #34 RELL1 (ENSTMTG00000001889) #35 Testudinidae ANCESTRAL SPECIES 11 ENSGT00940000158985 ENSGT00940000157235 #7 ENSGT00940000160460 #9 ENSGT00950000183137.b.a #10 ENSGT00940000155800 #11 ENSGT00940000162224 #12 ENSGT00390000015958 #13 ENSGT00940000157294 #14 ENSGT00390000007332 #15 ENSGT00390000010434.a #16 ENSGT00390000012556 #17 ENSGT00390000004612 #18 ENSGT00950000183177.b ##19 ENSGT00940000159983 #20 ENSGT00390000002398 #21 ENSGT00390000005197.a #22 ENSGT01100000263563.c.b #23 ENSGT00390000015965 #24 ENSGT00390000000214.a.b #25 ENSGT00550000074828.a.b ENSGT00940000157221.r #28 ENSGT00940000160197 #31 ENSGT00940000153404.b #32 ENSGT00940000165320 ENSGT00940000153648.b #33 ENSGT00390000013778 #34 ENSGT00940000159709 #35 ENSGT00940000156247 #37 ENSGT01030000235076 ENSGT00940000157949 ENSGT00940000157456 Goode s thornscrub tortoise MODERN SPECIES 19 ADGRA3 (ENSGEVG00005017643) #7 ENSGEVG00005017685 GBA3 (ENSGEVG00005017692) #9 PPARGC1A (ENSGEVG00005017736) #10 DHX15 (ENSGEVG00005017920) #11 SOD3 (ENSGEVG00005017946) #12 CCDC149 (ENSGEVG00005017958) #13 LGI2 (ENSGEVG00005017978) #14 SEPSECS (ENSGEVG00005018007) #15 PI4K2B (ENSGEVG00005018044) #16 ZCCHC4 (ENSGEVG00005018084) #17 ANAPC4 (ENSGEVG00005018145) #18 ENSGEVG00005018253 ##19 SEL1L3 (ENSGEVG00005018390) #20 SMIM20 (ENSGEVG00005018677) #21 RBPJ (ENSGEVG00005018699) #22 CCKAR (ENSGEVG00005018734) #23 TBC1D19 (ENSGEVG00005018764) #24 STIM2 (ENSGEVG00005018809) #25 ENSGEVG00005018826 ENSGEVG00005018842 ENSGEVG00005018852 #28 ENSGEVG00005018865 #28 ARAP2 (ENSGEVG00005018912) #31 DTHD1 (ENSGEVG00005019031) #32 ENSGEVG00005004128 NWD2 (ENSGEVG00005004151) #33 C4orf19 (ENSGEVG00005004186) #34 RELL1 (ENSGEVG00005004232) #35 PGM2 (ENSGEVG00005004263) #37 ENSGEVG00005004286 Abingdon island giant tortoise MODERN SPECIES 2365 SOD3 (ENSCABG00000003003) #12 CCDC149 (ENSCABG00000003000) #13 LGI2 (ENSCABG00000002903) #14 SEPSECS (ENSCABG00000002892) #15 PI4K2B (ENSCABG00000002889) #16 ZCCHC4 (ENSCABG00000002879) #17 ANAPC4 (ENSCABG00000002861) #18 ENSCABG00000002847 ##19 SEL1L3 (ENSCABG00000002785) #20 SMIM20 (ENSCABG00000002779) #21 ENSCABG00000002776 RBPJ (ENSCABG00000002773) #22 CCKAR (ENSCABG00000002770) #23 TBC1D19 (ENSCABG00000002619) #24 STIM2 (ENSCABG00000002594) #25