Rodentia_A	ANCESTRAL SPECIES		ENSGT00930000151037	ENSGT00390000012439 #8	ENSGT00940000157931	ENSGT00940000160929 #9	ENSGT00940000159408 #10	ENSGT00940000159980 #11	ENSGT00940000153395.b #12	ENSGT00390000013828 #13	ENSGT00390000017402 #15	ENSGT00390000012490 #16	ENSGT00940000159291 #17	ENSGT00940000154513.B #18	ENSGT00940000154513.A ##18	ENSGT00390000007643 #19	ENSGT01030000234558.A.a.a.b #21	ENSGT00390000013727.c #22	ENSGT00390000003768 #23	ENSGT00510000049215 #24	ENSGT00940000161800 #26	ENSGT00950000183083.b #27	ENSGT00940000158724 #28	ENSGT00940000157630 #31	ENSGT00940000162160 #32	ENSGT00390000014553 #33	ENSGT01030000234531.A.b.b.b.e.b #36	ENSGT01030000234531.A.b.b.b.f ##36	ENSGT00940000162571	ENSGT00390000000013	ENSGT00940000159410	ENSGT00390000002770	ENSGT00940000154570.a.b
Hystricomorpha	ANCESTRAL SPECIES	4	ENSGT00930000151037	ENSGT00390000012439 #8	ENSGT00940000157931	ENSGT00940000160929 #9	ENSGT00940000159408 #10	ENSGT00940000159980 #11	ENSGT00940000153395.b #12	ENSGT00390000013828 #13	ENSGT00940000160527.f #14	ENSGT00390000017402 #15	ENSGT00390000012490 #16	ENSGT00940000159291 #17	ENSGT00940000154513.B #18	ENSGT00390000007643 #19	ENSGT01030000234558.A.a.a.b #21	ENSGT00390000013727.c #22	ENSGT00390000003768 #23	ENSGT00510000049215 #24	ENSGT00940000161800 #26	ENSGT00950000183083.b #27	ENSGT00940000158724 #28	ENSGT00940000157630.h #29	ENSGT00940000157630.g.a #31	ENSGT00940000157630.g.b ##31	ENSGT00940000162160 #32	ENSGT00390000014553 #33	ENSGT01030000234531.A.b.b.b.e.b.c #36	ENSGT00940000162571	ENSGT00390000000013	ENSGT00940000170582	ENSGT00940000159410
Naked mole-rat female	MODERN SPECIES	26	ANGPTL7 (ENSHGLG00000011558) #7	UBIAD1 (ENSHGLG00000044652) #8	FBXO2 (ENSHGLG00000046459) #9	FBXO44 (ENSHGLG00000009682) #10	FBXO6 (ENSHGLG00000009269) #11	MAD2L2 (ENSHGLG00000008925) #12	DRAXIN (ENSHGLG00000008579) #13	ENSHGLG00000049192 #14	AGTRAP (ENSHGLG00000008515) #15	MTHFR (ENSHGLG00000008468) #16	CLCN6 (ENSHGLG00000018621) #17	NPPA (ENSHGLG00000044156) #18	KIAA2013 (ENSHGLG00000034219) #19	ENSHGLG00000011999 #20	ENSHGLG00000040198 #21	MFN2 (ENSHGLG00000011663) #22	MIIP (ENSHGLG00000011300) #23	TNFRSF8 (ENSHGLG00000041237) #24	ENSHGLG00000038264 #25	TNFRSF1B (ENSHGLG00000010937) #26	VPS13D (ENSHGLG00000010579) #27	DHRS3 (ENSHGLG00000010111) #28	ENSHGLG00000009925 #29	ENSHGLG00000020636 #30	ENSHGLG00000008970 #31	ENSHGLG00000032493 #32	CFAP107 (ENSHGLG00000044279) #33	ENSHGLG00000007987 #34	ENSHGLG00000046895 #35	ENSHGLG00000038268 #36	ENSHGLG00000046244 #37
Hystricomorpha_a	ANCESTRAL SPECIES	1	ENSGT00930000151037	ENSGT00390000012439 #8	ENSGT00940000157931	ENSGT00940000160929 #9	ENSGT00940000159408 #10	ENSGT00940000159980 #11	ENSGT00940000153395.b #12	ENSGT00390000013828 #13	ENSGT00940000160527.f #14	ENSGT00390000017402 #15	ENSGT00390000012490 #16	ENSGT00940000159291 #17	ENSGT00940000154513.B #18	ENSGT00390000007643 #19	ENSGT01030000234558.A.a.a.b #21	ENSGT00390000013727.c #22	ENSGT00390000003768 #23	ENSGT00510000049215 #24	ENSGT00940000161800 #26	ENSGT00950000183083.b #27	ENSGT00940000158724 #28	ENSGT00940000157630.h #29	ENSGT00940000157630.g.a #31	ENSGT00940000157630.g.b ##31	ENSGT00940000162160 #32	ENSGT00390000014553 #33	ENSGT00940000162571	ENSGT00940000170582	ENSGT00940000159410	ENSGT00940000154570.b	ENSGT00390000009278
Hystricomorpha_b	ANCESTRAL SPECIES	47	ENSGT00930000151037	ENSGT00390000012439 #8	ENSGT00940000157931	ENSGT00940000160929 #9	ENSGT00940000159408 #10	ENSGT00940000159980 #11	ENSGT00940000153395.b #12	ENSGT00390000013828 #13	ENSGT00940000160527.f #14	ENSGT00390000017402 #15	ENSGT00390000012490 #16	ENSGT00940000159291 #17	ENSGT00940000154513.B #18	ENSGT00390000007643 #19	ENSGT01030000234558.A.a.a.b #21	ENSGT00390000013727.c #22	ENSGT00390000003768 #23	ENSGT00510000049215 #24	ENSGT00940000161800 #26	ENSGT00950000183083.b #27	ENSGT00940000158724 #28	ENSGT00940000157630.g.a.a #31	ENSGT00940000157630.g.b ##31	ENSGT00940000162160 #32	ENSGT00390000014553 #33
Long-tailed chinchilla	MODERN SPECIES	193	MTOR (ENSCLAG00000009558)	UBIAD1 (ENSCLAG00000008367) #8	DISP3 (ENSCLAG00000007721)	FBXO2 (ENSCLAG00000006915) #9	FBXO44 (ENSCLAG00000006164) #10	FBXO6 (ENSCLAG00000004528) #11	MAD2L2 (ENSCLAG00000004348) #12	DRAXIN (ENSCLAG00000005857) #13	ENSCLAG00000005422 #14	AGTRAP (ENSCLAG00000005252) #15	MTHFR (ENSCLAG00000004974) #16	CLCN6 (ENSCLAG00000008993) #17	NPPA (ENSCLAG00000011401) #18	PLOD1 (ENSCLAG00000013276) #21	KIAA2013 (ENSCLAG00000012083) #19	MFN2 (ENSCLAG00000009293) #22	MIIP (ENSCLAG00000008183) #23	ENSCLAG00000011220 #24	TNFRSF1B (ENSCLAG00000017193) #26	VPS13D (ENSCLAG00000006701) #27	DHRS3 (ENSCLAG00000005004) #28	ENSCLAG00000006201 #31	ENSCLAG00000005781 #31	ENSCLAG00000005674 ##31	AADACL3 (ENSCLAG00000005582) #32	CFAP107 (ENSCLAG00000005264) #33
Degu	MODERN SPECIES	154	MTOR (ENSODEG00000013301)	ANGPTL7 (ENSODEG00000014472) #7	UBIAD1 (ENSODEG00000012730) #8	DISP3 (ENSODEG00000013940)	FBXO2 (ENSODEG00000014000) #9	FBXO44 (ENSODEG00000013642) #10	FBXO6 (ENSODEG00000012870) #11	MAD2L2 (ENSODEG00000014183) #12	AGTRAP (ENSODEG00000014964) #15	MTHFR (ENSODEG00000013407) #16	CLCN6 (ENSODEG00000013643) #17	ENSODEG00000012795	NPPA (ENSODEG00000013314) #18	KIAA2013 (ENSODEG00000013918) #19	PLOD1 (ENSODEG00000013340) #21	MFN2 (ENSODEG00000015359) #22	MIIP (ENSODEG00000012969) #23	TNFRSF1B (ENSODEG00000013661) #26	VPS13D (ENSODEG00000013523) #27	DHRS3 (ENSODEG00000013556) #28	ENSODEG00000014725
Guinea pig	MODERN SPECIES	25	MTOR (ENSCPOG00000011641)	UBIAD1 (ENSCPOG00000034388) #8	DISP3 (ENSCPOG00000007061)	FBXO2 (ENSCPOG00000012611) #9	FBXO44 (ENSCPOG00000026240) #10	MAD2L2 (ENSCPOG00000022099) #12	FBXO6 (ENSCPOG00000037191) #11	DRAXIN (ENSCPOG00000014214) #13	ENSCPOG00000004934 #14	AGTRAP (ENSCPOG00000030800) #15	MTHFR (ENSCPOG00000002899) #16	CLCN6 (ENSCPOG00000003508) #17	NPPA (ENSCPOG00000019564) #18	KIAA2013 (ENSCPOG00000022694) #19	PLOD1 (ENSCPOG00000020909) #21	MFN2 (ENSCPOG00000006834) #22	MIIP (ENSCPOG00000032652) #23	ENSCPOG00000009191 #24	TNFRSF1B (ENSCPOG00000020299) #26	VPS13D (ENSCPOG00000010440) #27	DHRS3 (ENSCPOG00000001600) #28	ENSCPOG00000010237 #29	ENSCPOG00000015038 #31	ENSCPOG00000011374 ##31	AADACL3 (ENSCPOG00000000228) #32	CFAP107 (ENSCPOG00000003643) #33	LRRC38 (ENSCPOG00000031681)	ENSCPOG00000038973	PRDM2 (ENSCPOG00000038436)	ENSCPOG00000007591	ENSCPOG00000035462
Sciuridae	ANCESTRAL SPECIES	3	ENSGT00930000151037	ENSGT00390000012439 #8	ENSGT00940000157931	ENSGT00940000160929 #9	ENSGT00940000159408 #10	ENSGT00940000159980 #11	ENSGT00940000153395.b #12	ENSGT00390000013828 #13	ENSGT00390000017402 #15	ENSGT00390000012490 #16	ENSGT00940000159291 #17	ENSGT00940000154513.B #18	ENSGT00940000154513.A ##18	ENSGT00390000007643 #19	ENSGT01030000234558.A.a.a.b #21	ENSGT00390000013727.c #22	ENSGT00390000003768 #23	ENSGT00510000049215 #24	ENSGT00940000161800 #26	ENSGT00950000183083.b #27	ENSGT00940000158724 #28	ENSGT00940000157630 #31	ENSGT00940000162160 #32	ENSGT00390000014553 #33	ENSGT01030000234531.A.b.b.b.f.b.b ##36	ENSGT00940000162571	ENSGT00390000000013	ENSGT00940000159410	ENSGT00940000154570.a.b	ENSGT00940000154570.b	ENSGT00390000009278
Marmotini	ANCESTRAL SPECIES		ENSGT00930000151037	ENSGT00390000012439 #8	ENSGT00940000157931	ENSGT00940000160929 #9	ENSGT00940000159408 #10	ENSGT00940000159980 #11	ENSGT00940000153395.b #12	ENSGT00390000013828 #13	ENSGT00390000017402 #15	ENSGT00390000012490 #16	ENSGT00940000159291 #17	ENSGT00940000154513.B #18	ENSGT00940000154513.A ##18	ENSGT00390000007643 #19	ENSGT01030000234558.A.a.a.b #21	ENSGT00390000013727.c #22	ENSGT00390000003768 #23	ENSGT00510000049215 #24	ENSGT00940000161800 #26	ENSGT00950000183083.b #27	ENSGT00940000158724 #28	ENSGT00940000157630.c #31	ENSGT00940000162160 #32	ENSGT00390000014553 #33	ENSGT00940000162571	ENSGT00390000000013	ENSGT00940000159410	ENSGT00940000154570.a.b	ENSGT00940000154570.b	ENSGT00390000009278	ENSGT00940000154171.A
Marmotini_b	ANCESTRAL SPECIES		ENSGT00930000151037	ENSGT00390000012439 #8	ENSGT00940000157931	ENSGT00940000160929 #9	ENSGT00940000159408 #10	ENSGT00940000159980 #11	ENSGT00940000153395.b #12	ENSGT00390000013828 #13	ENSGT00390000017402 #15	ENSGT00390000012490 #16	ENSGT00940000159291 #17	ENSGT00940000154513.B #18	ENSGT00940000154513.A ##18	ENSGT00390000007643 #19	ENSGT01030000234558.A.a.a.b #21	ENSGT00390000013727.c #22	ENSGT00390000003768 #23	ENSGT00510000049215 #24	ENSGT00940000161800 #26	ENSGT00950000183083.b #27	ENSGT00940000158724 #28	ENSGT00940000157630.c #31	ENSGT00940000162160 #32	ENSGT00390000014553 #33	ENSGT00940000162571	ENSGT00390000000013	ENSGT00940000159410	ENSGT00940000154570.a.b	ENSGT00940000154570.b	ENSGT00390000009278	ENSGT00940000154171.A
Arctic ground squirrel	MODERN SPECIES	192	MTOR (ENSUPAG00010003456)	ANGPTL7 (ENSUPAG00010003518) #7	UBIAD1 (ENSUPAG00010003527) #8	DISP3 (ENSUPAG00010003537)	FBXO2 (ENSUPAG00010003569) #9	FBXO6 (ENSUPAG00010003574) #11	MAD2L2 (ENSUPAG00010003610) #12	DRAXIN (ENSUPAG00010003632) #13	ENSUPAG00010003642	MTHFR (ENSUPAG00010003678) #16	CLCN6 (ENSUPAG00010003705) #17	NPPA (ENSUPAG00010003768) #18	ENSUPAG00010003781 ##18	KIAA2013 (ENSUPAG00010003792) #19	PLOD1 (ENSUPAG00010003800) #21	MFN2 (ENSUPAG00010003824) #22	MIIP (ENSUPAG00010003861) #23	TNFRSF8 (ENSUPAG00010003869) #24	TNFRSF1B (ENSUPAG00010003884) #26	VPS13D (ENSUPAG00010003922) #27	DHRS3 (ENSUPAG00010004636) #28	ENSUPAG00010004669 #31	ENSUPAG00010004670 #31	AADACL3 (ENSUPAG00010004684) #32	ENSUPAG00010004689
Squirrel	MODERN SPECIES	74	ANGPTL7 (ENSSTOG00000005589) #7	UBIAD1 (ENSSTOG00000022240) #8	DISP3 (ENSSTOG00000009265)	FBXO2 (ENSSTOG00000025486) #9	FBXO44 (ENSSTOG00000009941) #10	FBXO6 (ENSSTOG00000009949) #11	MAD2L2 (ENSSTOG00000009961) #12	DRAXIN (ENSSTOG00000001281) #13	AGTRAP (ENSSTOG00000030212) #15	MTHFR (ENSSTOG00000007591) #16	CLCN6 (ENSSTOG00000007614) #17	ENSSTOG00000007663 #18	NPPB (ENSSTOG00000020778) ##18	KIAA2013 (ENSSTOG00000027586) #19	PLOD1 (ENSSTOG00000009927) #21	MFN2 (ENSSTOG00000005705) #22	MIIP (ENSSTOG00000024734) #23	TNFRSF1B (ENSSTOG00000024605) #26	VPS13D (ENSSTOG00000005519) #27	DHRS3 (ENSSTOG00000016015) #28	AADACL4 (ENSSTOG00000019534) #31	AADACL3 (ENSSTOG00000007059) #32	CFAP107 (ENSSTOG00000009816) #33	LRRC38 (ENSSTOG00000023111)	PDPN (ENSSTOG00000032629)	PRDM2 (ENSSTOG00000019848)	ENSSTOG00000023112	ENSSTOG00000030433	TMEM51 (ENSSTOG00000020167)	FHAD1 (ENSSTOG00000023646)	EFHD2 (ENSSTOG00000025403)
Alpin marmot	MODERN SPECIES	73	ANGPTL7 (ENSMMMG00000016833) #7	MTOR (ENSMMMG00000016791)	UBIAD1 (ENSMMMG00000016787) #8	DISP3 (ENSMMMG00000016764)	FBXO2 (ENSMMMG00000016755) #9	FBXO44 (ENSMMMG00000016734) #10	FBXO6 (ENSMMMG00000016731) #11	MAD2L2 (ENSMMMG00000016711) #12	DRAXIN (ENSMMMG00000016699) #13	AGTRAP (ENSMMMG00000016693) #15	MTHFR (ENSMMMG00000016671) #16	CLCN6 (ENSMMMG00000016637) #17	NPPA (ENSMMMG00000016626) #18	ENSMMMG00000016621 ##18	PLOD1 (ENSMMMG00000016602) #21	MFN2 (ENSMMMG00000016567) #22	TNFRSF8 (ENSMMMG00000016534) #24	TNFRSF1B (ENSMMMG00000016525) #26	VPS13D (ENSMMMG00000016395) #27	DHRS3 (ENSMMMG00000016372) #28	AADACL4 (ENSMMMG00000016366) #31	AADACL3 (ENSMMMG00000016361) #32	CFAP107 (ENSMMMG00000016358) #33
Eurasian red squirrel	MODERN SPECIES		ANGPTL7 (ENSSVLG00005005951) #7	UBIAD1 (ENSSVLG00005005985) #8	DISP3 (ENSSVLG00005006030)	FBXO2 (ENSSVLG00005006137) #9	FBXO44 (ENSSVLG00005006188) #10	FBXO6 (ENSSVLG00005006238) #11	MAD2L2 (ENSSVLG00005006268) #12	DRAXIN (ENSSVLG00005006297) #13	AGTRAP (ENSSVLG00005006342) #15	MTHFR (ENSSVLG00005006411) #16	CLCN6 (ENSSVLG00005006533) #17	NPPA (ENSSVLG00005006599) #18	NPPB (ENSSVLG00005006653) ##18	KIAA2013 (ENSSVLG00005006695) #19	PLOD1 (ENSSVLG00005006729) #21	MFN2 (ENSSVLG00005006764) #22	MIIP (ENSSVLG00005006797) #23	TNFRSF8 (ENSSVLG00005006831) #24	ENSSVLG00005006934	TNFRSF1B (ENSSVLG00005006983) #26	VPS13D (ENSSVLG00005007158) #27	DHRS3 (ENSSVLG00005007738) #28	ENSSVLG00005007795 #31	ENSSVLG00005007846 #31	AADACL3 (ENSSVLG00005007922) #32	CFAP107 (ENSSVLG00005007956) #33	ENSSVLG00005008079 ##36	LRRC38 (ENSSVLG00005008488)	PDPN (ENSSVLG00005008527)	PRDM2 (ENSSVLG00005008674)	KAZN (ENSSVLG00005008929)