Mus_A	ANCESTRAL SPECIES	3	ENSGT00930000151037 #7	ENSGT00390000012439 #8	ENSGT00940000157931 #9	ENSGT00940000160929 #10	ENSGT00940000159408 #11	ENSGT00940000159980	ENSGT00940000153395.b #12	ENSGT00390000013828 #13	ENSGT00390000017402 #15	ENSGT00390000012490 #16	ENSGT00940000159291 #17	ENSGT00940000154513.B #18	ENSGT00940000154513.A #19	ENSGT00390000007643 #20	ENSGT01030000234558.A.a.a.b #21	ENSGT00390000013727.c #22	ENSGT00390000003768 #23	ENSGT00940000154469.a.a.a.a.a.b #24	ENSGT00940000154712.c.a.b.b	ENSGT00940000161688.f.b.a.b	ENSGT00510000049215	ENSGT00940000161800	ENSGT00950000183083.b	ENSGT00940000158724	ENSGT00940000157630.a.a.a.a	ENSGT00940000157630.a.a.a.b	ENSGT00940000157630.a.a.b	ENSGT00940000157630.a.b	ENSGT00940000163565	ENSGT00940000157630.b.a	ENSGT00940000162160
Mus_B	ANCESTRAL SPECIES	5	ENSGT00930000151037 #7	ENSGT00390000012439 #8	ENSGT00940000157931 #9	ENSGT00940000160929 #10	ENSGT00940000159408 #11	ENSGT00940000159980	ENSGT00940000153395.b #12	ENSGT00390000013828 #13	ENSGT00390000017402 #15	ENSGT00390000012490 #16	ENSGT00940000159291 #17	ENSGT00940000154513.B #18	ENSGT00940000154513.A #19	ENSGT00390000007643 #20	ENSGT01030000234558.A.a.a.b #21	ENSGT00390000013727.c #22	ENSGT00940000168197	ENSGT00390000003768 #23	ENSGT00940000154469.a.a.a.a.a.b #24	ENSGT00940000154712.c.a.b.b.d.a.a.a.b	ENSGT00940000154712.c.a.b.b.d.a.a.a.a	ENSGT00510000049215	ENSGT00940000161800	ENSGT00950000183083.b	ENSGT00940000158724	ENSGT00940000157630.a.a.a.a	ENSGT00940000157630.a.a.a.b	ENSGT00940000157630.a.a.b	ENSGT00940000157630.a.b	ENSGT00940000163565	ENSGT00940000157630.b.a
Mus_C	ANCESTRAL SPECIES	2	ENSGT00930000151037 #7	ENSGT00390000012439 #8	ENSGT00940000157931 #9	ENSGT00940000160929 #10	ENSGT00940000159408 #11	ENSGT00940000159980	ENSGT00940000153395.b #12	ENSGT00390000013828 #13	ENSGT00390000017402 #15	ENSGT00390000012490 #16	ENSGT00940000159291 #17	ENSGT00940000154513.B #18	ENSGT00940000154513.A #19	ENSGT00390000007643 #20	ENSGT01030000234558.A.a.a.b #21	ENSGT00390000013727.c #22	ENSGT00940000168197	ENSGT00390000003768 #23	ENSGT00940000154469.a.a.a.a.a.b #24	ENSGT00510000049215	ENSGT00940000161800	ENSGT00950000183083.b	ENSGT00940000158724	ENSGT00940000157630.a.a.a.a	ENSGT00940000157630.a.a.a.b	ENSGT00940000157630.a.a.b	ENSGT00940000157630.a.b	ENSGT00940000163565	ENSGT00940000157630.b.a	ENSGT00940000162160	ENSGT00860000136337
Steppe mouse	MODERN SPECIES	3147	Mtor (ENSMSIG00000011592) #7	Ubiad1 (ENSMSIG00000011575) #8	Disp3 (ENSMSIG00000011555) #9	Fbxo2 (ENSMSIG00000011541) #10	ENSMSIG00000011464 #11	Mad2l2 (ENSMSIG00000011418) #12	Draxin (ENSMSIG00000011398) #13	ENSMSIG00000011372 #14	Agtrap (ENSMSIG00000011355) #15	Mthfr (ENSMSIG00000011288) #16	Clcn6 (ENSMSIG00000011225) #17	Nppa (ENSMSIG00000011213) #18	Nppb (ENSMSIG00000011201) #19	2510039O18Rik (ENSMSIG00000011176) #20	Plod1 (ENSMSIG00000011130) #21	Mfn2 (ENSMSIG00000011070) #22	Miip (ENSMSIG00000011005) #23	Zfp933 (ENSMSIG00000010977) #24
spretus	MODERN SPECIES	13	Mtor (MGP_SPRETEiJ_G0027793) #7	Ubiad1 (MGP_SPRETEiJ_G0027792) #8	Disp3 (MGP_SPRETEiJ_G0027791) #9	Fbxo2 (MGP_SPRETEiJ_G0027790) #10	Fbxo44 (MGP_SPRETEiJ_G0027789) #11	Fbxo6 (MGP_SPRETEiJ_G0027788)	Mad2l2 (MGP_SPRETEiJ_G0027787) #12	Draxin (MGP_SPRETEiJ_G0027786) #13	Agtrap (MGP_SPRETEiJ_G0027785) #15	Mthfr (MGP_SPRETEiJ_G0027784) #16	Clcn6 (MGP_SPRETEiJ_G0027783) #17	Nppa (MGP_SPRETEiJ_G0027782) #18	Nppb (MGP_SPRETEiJ_G0027781) #19	2510039O18Rik (MGP_SPRETEiJ_G0027780) #20	Plod1 (MGP_SPRETEiJ_G0027779) #21	Mfn2 (MGP_SPRETEiJ_G0027778) #22	Fv1 (MGP_SPRETEiJ_G0027777)	Miip (MGP_SPRETEiJ_G0027776) #23	Zfp933 (MGP_SPRETEiJ_G0027775) #24	Tnfrsf8 (MGP_SPRETEiJ_G0027774)	Tnfrsf1b (MGP_SPRETEiJ_G0027773)	Vps13d (MGP_SPRETEiJ_G0027772)	Dhrs3 (MGP_SPRETEiJ_G0027771)	Aadacl4fm5 (MGP_SPRETEiJ_G0027770)	AAdacl4fm3 (MGP_SPRETEiJ_G0027769)	Aadacl4fm4 (MGP_SPRETEiJ_G0027768)	MGP_SPRETEiJ_G0027767	Aadacl4fm2 (MGP_SPRETEiJ_G0027766)	Aadacl4fm1 (MGP_SPRETEiJ_G0027765)	Aadacl3 (MGP_SPRETEiJ_G0027764)	MGP_SPRETEiJ_G0027763
Mouse	MODERN SPECIES	13	Mtor (ENSMUSG00000028991) #7	Ubiad1 (ENSMUSG00000047719) #8	Disp3 (ENSMUSG00000041544) #9	Fbxo2 (ENSMUSG00000041556) #10	Fbxo44 (ENSMUSG00000029001) #11	Fbxo6 (ENSMUSG00000055401)	Mad2l2 (ENSMUSG00000029003) #12	Draxin (ENSMUSG00000029005) #13	Agtrap (ENSMUSG00000029007) #15	Mthfr (ENSMUSG00000029009) #16	Clcn6 (ENSMUSG00000029016) #17	Nppa (ENSMUSG00000041616) #18	Nppb (ENSMUSG00000029019) #19	2510039O18Rik (ENSMUSG00000044496) #20	Plod1 (ENSMUSG00000019055) #21	Mfn2 (ENSMUSG00000029020) #22	Fv1 (ENSMUSG00000070583)	Miip (ENSMUSG00000029022) #23	Zfp933 (ENSMUSG00000059423) #24	Zfp984 (ENSMUSG00000078495)	Zfp534 (ENSMUSG00000062518)	Zfp979 (ENSMUSG00000066000)	Zfp985 (ENSMUSG00000065999)	Zfp982 (ENSMUSG00000078496)	Zfp978 (ENSMUSG00000078497)	Zfp988 (ENSMUSG00000078498)	Zfp991 (ENSMUSG00000067916)	Rex2 (ENSMUSG00000067919)	Zfp989 (ENSMUSG00000086147)	Gm21411 (ENSMUSG00000045699)	Zfp993 (ENSMUSG00000063245)
Ryukyu mouse	MODERN SPECIES	13	Mtor (MGP_CAROLIEiJ_G0026800) #7	Ubiad1 (MGP_CAROLIEiJ_G0026799) #8	Disp3 (MGP_CAROLIEiJ_G0026798) #9	Fbxo2 (MGP_CAROLIEiJ_G0026797) #10	Fbxo44 (MGP_CAROLIEiJ_G0026796) #11	Fbxo6 (MGP_CAROLIEiJ_G0026795)	MGP_CAROLIEiJ_G0026794 #12	Draxin (MGP_CAROLIEiJ_G0026793) #13	Agtrap (MGP_CAROLIEiJ_G0026792) #15	Mthfr (MGP_CAROLIEiJ_G0026791) #16	Clcn6 (MGP_CAROLIEiJ_G0026790) #17	Nppa (MGP_CAROLIEiJ_G0026789) #18	Nppb (MGP_CAROLIEiJ_G0026788) #19	2510039O18Rik (MGP_CAROLIEiJ_G0026787) #20	Plod1 (MGP_CAROLIEiJ_G0026786) #21	Mfn2 (MGP_CAROLIEiJ_G0026785) #22	Miip (MGP_CAROLIEiJ_G0026784) #23	MGP_CAROLIEiJ_G0026783 ##24	Tnfrsf8 (MGP_CAROLIEiJ_G0026782)	Tnfrsf1b (MGP_CAROLIEiJ_G0026781)	Vps13d (MGP_CAROLIEiJ_G0026780)	Dhrs3 (MGP_CAROLIEiJ_G0026779)	Aadacl4fm5 (MGP_CAROLIEiJ_G0026778)	AAdacl4fm3 (MGP_CAROLIEiJ_G0026777)	Aadacl4fm4 (MGP_CAROLIEiJ_G0026776)	Aadacl4 (MGP_CAROLIEiJ_G0026775)	Aadacl4fm2 (MGP_CAROLIEiJ_G0026774)	Aadacl4fm1 (MGP_CAROLIEiJ_G0026773)	Aadacl3 (MGP_CAROLIEiJ_G0026772)	MGP_CAROLIEiJ_G0026771	Cfap107 (MGP_CAROLIEiJ_G0026770)