Bilateria	ANCESTRAL SPECIES																	ENSGT00520000055591 #22
Chordata	ANCESTRAL SPECIES	52																ENSGT00520000055591 #22	ENSGT00390000004835
Vertebrata	DUPLICATION
Vertebrata	ANCESTRAL SPECIES	478																ENSGT00520000055591.a #22	ENSGT00390000004835
Gnathostomata	ANCESTRAL SPECIES	181		ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00960000186843	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000158196	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22
Euteleostomi	ANCESTRAL SPECIES	61	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00960000186843	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00940000164186.a	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648
Sarcopterygii	ANCESTRAL SPECIES	88	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00960000186843	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00940000164186.a	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648
Tetrapoda	ANCESTRAL SPECIES	8	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00960000186843	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00940000164186.a	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648
Amniota	ANCESTRAL SPECIES	9	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00910000148470	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00960000186843	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00940000164186.a	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092
Mammalia	ANCESTRAL SPECIES	5	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00910000148470	ENSGT00940000156968 #14	ENSGT00960000186843	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00940000164186.a	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00980000202328	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568
Theria	ANCESTRAL SPECIES	3	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00910000148470	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00960000186843	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00940000164186.a	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00980000202328	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568
Eutheria	ANCESTRAL SPECIES		ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00910000148470	ENSGT00940000156968 #14	ENSGT00960000186843	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568
Boreoeutheria	ANCESTRAL SPECIES		ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00910000148470	ENSGT01010000228719	ENSGT00940000156968 #14	ENSGT00960000186843	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568
Euarchontoglires	ANCESTRAL SPECIES		ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00910000148470	ENSGT01010000228719	ENSGT00940000156968 #14	ENSGT00960000186843	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00910000148334	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37
Primates	ANCESTRAL SPECIES	4	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00910000148470	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00910000148214	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568
Haplorrhini	ANCESTRAL SPECIES	1	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00910000148470	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00910000148214	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568
Simiiformes	ANCESTRAL SPECIES	3	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00410000028138	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00910000148470	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a.l #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00910000147273	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00910000148214	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568.q.a.a.a
Catarrhini	ANCESTRAL SPECIES	3	ENSGT01030000234559.b #9	ENSGT00940000154174.s.a.b	ENSGT00390000000312 #10	ENSGT00410000028138	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a.l #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00910000147273	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00910000148214	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568.q.a.a.a
Cercopithecidae	ANCESTRAL SPECIES	2	ENSGT00940000154174.s.a.b	ENSGT00390000000312 #10	ENSGT00940000155155.d	ENSGT00410000028138	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a.l #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00910000147273	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00910000148334	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568.q.a.a.a
Cercopithecinae	ANCESTRAL SPECIES		ENSGT00940000154174.s.a.b	ENSGT00390000000312 #10	ENSGT00940000155155.d	ENSGT00410000028138	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a.l #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00910000147273	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00910000148334	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568.q.a.a.a
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00390000000312 #10	ENSGT00940000155155.d	ENSGT00410000028138	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a.l #17	ENSGT00950000182913.B #18	ENSGT00940000154430.e.a	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00910000147273	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00910000148334	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568.q.a.a.a
Macaca	ANCESTRAL SPECIES		ENSGT00940000155155.d	ENSGT00410000028138	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00390000016438.l #16	ENSGT00950000182976.b.a.l #17	ENSGT00950000182913.B #18	ENSGT00940000154430.e.a	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00910000147273	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568.q.a.a.a	ENSGT00940000157092
Macaca_a	ANCESTRAL SPECIES		ENSGT00940000159289	ENSGT00940000161627.a.a.a.a.b.a.a.b.a.a.a.a.a.a.a.a.a.b.b.a.a.a.a.a.a.a.b #7	ENSGT00730000111078.n ##8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00390000016438.l #16	ENSGT00950000182976.b.a.l #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT01100000263493.a.a.b.b.b.d.a.a #24	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568.q.a.a.a
Crab-eating macaque	MODERN SPECIES		ENSMFAG00000065809 #7	ENSMFAG00000003326 #8	PTGER3 (ENSMFAG00000040520) #9	CTH (ENSMFAG00000040329) #10	ANKRD13C (ENSMFAG00000042830) #11	ENSMFAG00000058749 #12	SRSF11 (ENSMFAG00000043405) #13	LRRC40 (ENSMFAG00000028307) #14	LRRC7 (ENSMFAG00000031304) #15	ENSMFAG00000036815 #16	DEPDC1 (ENSMFAG00000036197) #17	RPE65 (ENSMFAG00000043407) #18	WLS (ENSMFAG00000030065) #19	DIRAS3 (ENSMFAG00000059613) #20	GADD45A (ENSMFAG00000043026) #21	SERBP1 (ENSMFAG00000036635) #22	IL12RB2 (ENSMFAG00000044595) #23	ENSMFAG00000064282 #24	IL23R (ENSMFAG00000003679) #25	C1orf141 (ENSMFAG00000044140) #26	SLC35D1 (ENSMFAG00000025789) #27	ENSMFAG00000048772 #28	MIER1 (ENSMFAG00000043942) #29	DNAI4 (ENSMFAG00000033193) #30	INSL5 (ENSMFAG00000003313) #31	DYNLT5 (ENSMFAG00000044785) #32	SGIP1 (ENSMFAG00000045356) #33	PDE4B (ENSMFAG00000000162) #34	LEPR (ENSMFAG00000001122) #35	LEPROT (ENSMFAG00000033874) #36	DNAJC6 (ENSMFAG00000044659) #37
Rhesus	MODERN SPECIES		ZRANB2 (ENSMMUG00000017312) ##8	PTGER3 (ENSMMUG00000017309) #9	CTH (ENSMMUG00000019326) #10	ANKRD13C (ENSMMUG00000013853) #11	SRSF11 (ENSMMUG00000013852) #13	LRRC40 (ENSMMUG00000021921) #14	ENSMMUG00000063902 ##28	LRRC7 (ENSMMUG00000021917) #15	ENSMMUG00000007527 #16	DEPDC1 (ENSMMUG00000017766) #17	RPE65 (ENSMMUG00000002752) #18	WLS (ENSMMUG00000022908) #19	DIRAS3 (ENSMMUG00000013333) #20	GNG12 (ENSMMUG00000014807)	GADD45A (ENSMMUG00000056103) #21	SERBP1 (ENSMMUG00000000652) #22	ENSMMUG00000054458 ##28	IL12RB2 (ENSMMUG00000000651) #23	ENSMMUG00000060609 #24	IL23R (ENSMMUG00000000648) #25	C1H1orf141 (ENSMMUG00000000647) #26	SLC35D1 (ENSMMUG00000000645) #27	MIER1 (ENSMMUG00000000643) #29	DNAI4 (ENSMMUG00000000641) #30	INSL5 (ENSMMUG00000051044) #31	DYNLT5 (ENSMMUG00000000638) #32	SGIP1 (ENSMMUG00000000637) #33	PDE4B (ENSMMUG00000007490) #34	LEPR (ENSMMUG00000003265) #35	LEPROT (ENSMMUG00000003264) #36	DNAJC6 (ENSMMUG00000017259) #37
Pig-tailed macaque	MODERN SPECIES	266													GNG12 (ENSMNEG00000044463)	ENSMNEG00000035312	GADD45A (ENSMNEG00000028909) #21	SERBP1 (ENSMNEG00000027600) #22	IL12RB2 (ENSMNEG00000032662) #23	IL23R (ENSMNEG00000041313) #25	C1orf141 (ENSMNEG00000038606) #26	SLC35D1 (ENSMNEG00000041724) #27	MIER1 (ENSMNEG00000038429) #29	DNAI4 (ENSMNEG00000035999) #30	INSL5 (ENSMNEG00000035290) #31	DYNLT5 (ENSMNEG00000043428) #32	SGIP1 (ENSMNEG00000030767) #33	PDE4B (ENSMNEG00000042008) #34	LEPR (ENSMNEG00000033137) #35	LEPROT (ENSMNEG00000033772) #36	DNAJC6 (ENSMNEG00000029908) #37	ENSMNEG00000035202	JAK1 (ENSMNEG00000008188)
Cercopithecinae_b	ANCESTRAL SPECIES	1	ENSGT01030000234559.b #9	ENSGT00940000154174.s.a.b	ENSGT00390000000312 #10	ENSGT00940000155155.d	ENSGT00410000028138	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a.l #17	ENSGT00950000182913.B #18	ENSGT00940000154430.e.a	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00910000148334	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568.q.a.a.a
Cercopithecinae_d	ANCESTRAL SPECIES	19	ENSGT00940000154174.s.a.b	ENSGT00390000000312 #10	ENSGT00940000155155.d	ENSGT00410000028138	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00940000165544	ENSGT00950000182976.b.a.l #17	ENSGT00950000182913.B #18	ENSGT00940000154430.e.a	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00910000148334	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568.q.a.a.b.a
Sooty mangabey	MODERN SPECIES	238	ENSCATG00000040340	CTH (ENSCATG00000043574) #10	ENSCATG00000031068	ENSCATG00000035218	ANKRD13C (ENSCATG00000014535) #11	SRSF11 (ENSCATG00000043613) #13	LRRC40 (ENSCATG00000004246) #14	LRRC7 (ENSCATG00000042304) #15	ENSCATG00000039264	DEPDC1 (ENSCATG00000004444) #17	RPE65 (ENSCATG00000021512) #18	WLS (ENSCATG00000002594) #19	ENSCATG00000040157	GNG12 (ENSCATG00000012440)	GADD45A (ENSCATG00000040913) #21	SERBP1 (ENSCATG00000041393) #22	IL12RB2 (ENSCATG00000018629) #23	ENSCATG00000030460	ENSCATG00000031536	IL23R (ENSCATG00000043155) #25	C1orf141 (ENSCATG00000030751) #26	SLC35D1 (ENSCATG00000044973) #27	MIER1 (ENSCATG00000040832) #29	DNAI4 (ENSCATG00000039576) #30	INSL5 (ENSCATG00000029366) #31	DYNLT5 (ENSCATG00000010584) #32	SGIP1 (ENSCATG00000038351) #33	PDE4B (ENSCATG00000039238) #34	ENSCATG00000034318	LEPR (ENSCATG00000032495) #35	LEPROT (ENSCATG00000035075) #36
Drill	MODERN SPECIES	1151										DEPDC1 (ENSMLEG00000033775) #17	RPE65 (ENSMLEG00000031729) #18	ENSMLEG00000029003	WLS (ENSMLEG00000038942) #19	GNG12 (ENSMLEG00000038713)	GADD45A (ENSMLEG00000033790) #21	SERBP1 (ENSMLEG00000035841) #22	IL12RB2 (ENSMLEG00000035295) #23	IL23R (ENSMLEG00000036045) #25	C1orf141 (ENSMLEG00000032420) #26	SLC35D1 (ENSMLEG00000024346) #27	MIER1 (ENSMLEG00000041550) #29	DNAI4 (ENSMLEG00000042641) #30	INSL5 (ENSMLEG00000030103) #31	DYNLT5 (ENSMLEG00000039935) #32	SGIP1 (ENSMLEG00000023612) #33	PDE4B (ENSMLEG00000039969) #34
Olive baboon	MODERN SPECIES		ZRANB2 (ENSPANG00000013398) #8	PTGER3 (ENSPANG00000006005) #9	ENSPANG00000044968	CTH (ENSPANG00000009664) #10	ANKRD13C (ENSPANG00000022425) #11	SRSF11 (ENSPANG00000018677) #13	LRRC40 (ENSPANG00000004753) #14	LRRC7 (ENSPANG00000012864) #15	DEPDC1 (ENSPANG00000020338) #17	RPE65 (ENSPANG00000007871) #18	WLS (ENSPANG00000022426) #19	DIRAS3 (ENSPANG00000038255) #20	ENSPANG00000039979	GNG12 (ENSPANG00000050175)	GADD45A (ENSPANG00000005666) #21	SERBP1 (ENSPANG00000005883) #22	IL12RB2 (ENSPANG00000025662) #23	IL23R (ENSPANG00000000873) #25	ENSPANG00000049986	ENSPANG00000044457	C1orf141 (ENSPANG00000010612) #26	SLC35D1 (ENSPANG00000010289) #27	MIER1 (ENSPANG00000022218) #29	DNAI4 (ENSPANG00000005715) #30	INSL5 (ENSPANG00000023469) #31	DYNLT5 (ENSPANG00000016821) #32	SGIP1 (ENSPANG00000020215) #33	ENSPANG00000039640	PDE4B (ENSPANG00000008973) #34	ENSPANG00000047632 #35	ENSPANG00000017953 #35
Vervet Monkey	MODERN SPECIES	12	ENSCSAG00000001379	PTGER3 (ENSCSAG00000001378) #9	ENSCSAG00000000152	CTH (ENSCSAG00000001377) #10	ANKRD13C (ENSCSAG00000001376) #11	SRSF11 (ENSCSAG00000001375) #13	LRRC40 (ENSCSAG00000001374) #14	LRRC7 (ENSCSAG00000001373) #15	ENSCSAG00000001372	DEPDC1 (ENSCSAG00000001371) #17	RPE65 (ENSCSAG00000001370) #18	WLS (ENSCSAG00000001369) #19	DIRAS3 (ENSCSAG00000000151) #20	GNG12 (ENSCSAG00000001367)	GADD45A (ENSCSAG00000001366) #21	SERBP1 (ENSCSAG00000001365) #22	IL12RB2 (ENSCSAG00000001364) #23	IL23R (ENSCSAG00000001363) #25	C1orf141 (ENSCSAG00000001362) #26	SLC35D1 (ENSCSAG00000001361) #27	MIER1 (ENSCSAG00000001360) #29	DNAI4 (ENSCSAG00000001359) #30	INSL5 (ENSCSAG00000001358) #31	DYNLT5 (ENSCSAG00000001357) #32	SGIP1 (ENSCSAG00000001356) #33	PDE4B (ENSCSAG00000001355) #34	LEPR (ENSCSAG00000001354) #35	LEPROT (ENSCSAG00000001353) #36	DNAJC6 (ENSCSAG00000001352) #37	JAK1 (ENSCSAG00000001351)	RAVER2 (ENSCSAG00000001350)
Rhinopithecus	ANCESTRAL SPECIES	10									ENSGT00950000182976.b.a.l #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000154430.e.a	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00940000154095.b.a	ENSGT00940000154205.h	ENSGT00940000156321	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00910000148334	ENSGT00730000111209 #35
Golden snub-nosed monkey	MODERN SPECIES	3150											WLS (ENSRROG00000044981) #19	ENSRROG00000028816	DIRAS3 (ENSRROG00000028393) #20	GNG12 (ENSRROG00000044260)	GADD45A (ENSRROG00000032533) #21	SERBP1 (ENSRROG00000041079) #22	IL12RB2 (ENSRROG00000038878) #23	ENSRROG00000034482	IL23R (ENSRROG00000043794) #25	C1orf141 (ENSRROG00000040890) #26	SLC35D1 (ENSRROG00000037180) #27	MIER1 (ENSRROG00000030126) #29	DNAI4 (ENSRROG00000037211) #30	ENSRROG00000006379	INSL5 (ENSRROG00000036668) #31	DYNLT5 (ENSRROG00000037150) #32	SGIP1 (ENSRROG00000042341) #33	PDE4B (ENSRROG00000023516) #34
Black snub-nosed monkey	DUPLICATION
Black snub-nosed monkey	MODERN SPECIES	569								ENSRBIG00000009164	DEPDC1 (ENSRBIG00000037735) #17	RPE65 (ENSRBIG00000017984) #18	WLS (ENSRBIG00000033595) #19	ENSRBIG00000034757	DIRAS3 (ENSRBIG00000008401) #20	GNG12 (ENSRBIG00000039245)	GADD45A (ENSRBIG00000042903) #21	ENSRBIG00000040591 #22	IL12RB2 (ENSRBIG00000044278) #23	ENSRBIG00000040301	ENSRBIG00000031720	IL23R (ENSRBIG00000030662) #25	C1orf141 (ENSRBIG00000032392) #26	SLC35D1 (ENSRBIG00000037258) #27	MIER1 (ENSRBIG00000036441) #29	DNAI4 (ENSRBIG00000031969) #30	INSL5 (ENSRBIG00000044118) #31	DYNLT5 (ENSRBIG00000030373) #32	SGIP1 (ENSRBIG00000012071) #33	PDE4B (ENSRBIG00000043330) #34	ENSRBIG00000035828	LEPR (ENSRBIG00000038066) #35	LEPROT (ENSRBIG00000032071) #36
Black snub-nosed monkey	MODERN SPECIES	278																ENSRBIG00000044406 #22	PTER (ENSRBIG00000040043)	C1QL3 (ENSRBIG00000040157)	RSU1 (ENSRBIG00000032950)	CUBN (ENSRBIG00000038894)	TRDMT1 (ENSRBIG00000034410)	VIM (ENSRBIG00000028816)	ENSRBIG00000033723	ST8SIA6 (ENSRBIG00000032235)	ENSRBIG00000018242	HACD1 (ENSRBIG00000032558)	STAM (ENSRBIG00000029794)	TMEM236 (ENSRBIG00000032710)	MRC1 (ENSRBIG00000015790)	SLC39A12 (ENSRBIG00000036728)	CACNB2 (ENSRBIG00000034497)
Hominoidea	ANCESTRAL SPECIES	3	ENSGT00940000154174.s.a.b	ENSGT00390000000312 #10	ENSGT00410000028138	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00640000091578.m.a	ENSGT00950000182976.b.a.l.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00910000147273	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00910000148214	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568.q.a.a.a
Hominidae	DUPLICATION
Hominidae	ANCESTRAL SPECIES	3	ENSGT00940000154174.s.a.b	ENSGT00390000000312 #10	ENSGT00410000028138	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00640000091578.m.a	ENSGT00950000182976.b.a.l.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00910000147273	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a.u #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00910000148214	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568.q.a.a.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	3	ENSGT00940000154174.s.a.b	ENSGT00390000000312 #10	ENSGT00410000028138	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00640000091578.m.a	ENSGT00950000182976.b.a.l.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00910000147273	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a.u #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00910000148214	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568.q.a.a.a
Gorilla	MODERN SPECIES		ENSGGOG00000017176	CTH (ENSGGOG00000016539) #10	ENSGGOG00000043475	ANKRD13C (ENSGGOG00000016397) #11	SRSF11 (ENSGGOG00000005774) #13	LRRC40 (ENSGGOG00000000470) #14	ENSGGOG00000026287	LRRC7 (ENSGGOG00000015111) #15	DEPDC1 (ENSGGOG00000016316) #17	RPE65 (ENSGGOG00000009677) #18	ENSGGOG00000039762	WLS (ENSGGOG00000015460) #19	DIRAS3 (ENSGGOG00000043773) #20	GNG12 (ENSGGOG00000042148)	GADD45A (ENSGGOG00000010780) #21	SERBP1 (ENSGGOG00000010396) #22	IL12RB2 (ENSGGOG00000006395) #23	ENSGGOG00000041169	IL23R (ENSGGOG00000006543) #25	C1orf141 (ENSGGOG00000002630) #26	SLC35D1 (ENSGGOG00000009038) #27	MIER1 (ENSGGOG00000008663) #29	DNAI4 (ENSGGOG00000022093) #30	INSL5 (ENSGGOG00000027684) #31	DYNLT5 (ENSGGOG00000002407) #32	SGIP1 (ENSGGOG00000022052) #33	ENSGGOG00000042676	PDE4B (ENSGGOG00000006774) #34	LEPR (ENSGGOG00000000076) #35	LEPROT (ENSGGOG00000036673) #36	DNAJC6 (ENSGGOG00000010799) #37
Homo/Pan group	ANCESTRAL SPECIES	4	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00410000028138	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00640000091578.m.a	ENSGT00950000182976.b.a.l.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00910000147273	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a.u #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00910000148214	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568.q.a.a.a
Pan	ANCESTRAL SPECIES		ENSGT00410000028138	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00640000091578.m.a	ENSGT00950000182976.b.a.l.a #17	ENSGT00950000182913.B #18	ENSGT00390000014122.i.a.a	ENSGT00940000154430.e.a.a	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00910000147273	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a.u #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00910000148214	ENSGT00730000111209 #35	ENSGT01100000263543.a.g.a	ENSGT00390000006503.a #36	ENSGT00940000158755 #37
Chimpanzee	MODERN SPECIES		CTH (ENSPTRG00000000854) #10	ENSPTRG00000024173	ANKRD13C (ENSPTRG00000000853) #11	SRSF11 (ENSPTRG00000000852) #13	LRRC40 (ENSPTRG00000000850) #14	ENSPTRG00000049950	LRRC7 (ENSPTRG00000000848) #15	DEPDC1 (ENSPTRG00000000847) #17	RPE65 (ENSPTRG00000000846) #18	ENSPTRG00000048041	ENSPTRG00000050855	WLS (ENSPTRG00000000845) #19	DIRAS3 (ENSPTRG00000046970) #20	GNG12 (ENSPTRG00000048598)	GADD45A (ENSPTRG00000000842) #21	SERBP1 (ENSPTRG00000023560) #22	IL12RB2 (ENSPTRG00000000840) #23	ENSPTRG00000050354	IL23R (ENSPTRG00000000839) #25	C1H1orf141 (ENSPTRG00000030574) #26	SLC35D1 (ENSPTRG00000000838) #27	MIER1 (ENSPTRG00000000837) #29	DNAI4 (ENSPTRG00000043837) #30	INSL5 (ENSPTRG00000000835) #31	DYNLT5 (ENSPTRG00000050524) #32	SGIP1 (ENSPTRG00000000832) #33	ENSPTRG00000046740	PDE4B (ENSPTRG00000000831) #34	LEPR (ENSPTRG00000034314) #35	ENSPTRG00000052596	LEPROT (ENSPTRG00000046978) #36
Bonobo	MODERN SPECIES		DNAJC6 (ENSPPAG00000027682) #37	LEPROT (ENSPPAG00000026304) #36	ENSPPAG00000030271	LEPR (ENSPPAG00000034852) #35	PDE4B (ENSPPAG00000033320) #34	ENSPPAG00000032121	SGIP1 (ENSPPAG00000041547) #33	DYNLT5 (ENSPPAG00000043796) #32	INSL5 (ENSPPAG00000024922) #31	DNAI4 (ENSPPAG00000030982) #30	MIER1 (ENSPPAG00000036218) #29	SLC35D1 (ENSPPAG00000027327) #27	C1orf141 (ENSPPAG00000023141) #26	IL23R (ENSPPAG00000019836) #25	ENSPPAG00000018218	SERBP1 (ENSPPAG00000027596) #22	IL12RB2 (ENSPPAG00000029198) #23	GADD45A (ENSPPAG00000042185) #21	ENSPPAG00000018008	GNG12 (ENSPPAG00000036419)	DIRAS3 (ENSPPAG00000024921) #20	WLS (ENSPPAG00000033112) #19	ENSPPAG00000032814	ENSPPAG00000033442	RPE65 (ENSPPAG00000042629) #18	DEPDC1 (ENSPPAG00000037667) #17	LRRC7 (ENSPPAG00000043123) #15	ENSPPAG00000027412	LRRC40 (ENSPPAG00000034906) #14	SRSF11 (ENSPPAG00000036149) #13	ANKRD13C (ENSPPAG00000034786) #11
Human	MODERN SPECIES		LRRIQ3 (ENSG00000162620)	NEGR1 (ENSG00000172260)	ZRANB2 (ENSG00000132485) #8	PTGER3 (ENSG00000050628) #9	CTH (ENSG00000116761) #10	ANKRD13C (ENSG00000118454) #11	SRSF11 (ENSG00000116754) #13	LRRC40 (ENSG00000066557) #14	LRRC7 (ENSG00000033122) #15	DEPDC1 (ENSG00000024526) #17	RPE65 (ENSG00000116745) #18	WLS (ENSG00000116729) #19	DIRAS3 (ENSG00000162595) #20	GNG12 (ENSG00000172380)	GADD45A (ENSG00000116717) #21	SERBP1 (ENSG00000142864) #22	IL12RB2 (ENSG00000081985) #23	IL23R (ENSG00000162594) #25	C1orf141 (ENSG00000203963) #26	SLC35D1 (ENSG00000116704) #27	MIER1 (ENSG00000198160) #29	DNAI4 (ENSG00000152763) #30	INSL5 (ENSG00000172410) #31	DYNLT5 (ENSG00000152760) #32	SGIP1 (ENSG00000118473) #33	PDE4B (ENSG00000184588) #34	LEPR (ENSG00000116678) #35	LEPROT (ENSG00000213625) #36	DNAJC6 (ENSG00000116675) #37	AK4 (ENSG00000162433)	JAK1 (ENSG00000162434)
Hominidae	DUPLICATION
Hominidae	ANCESTRAL SPECIES	8	ENSGT00940000153902.b	ENSGT00940000162717	ENSGT00950000182870.a.a.b.i.b	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.a.a.c	ENSGT00390000001432	ENSGT00940000153336.e.a.a.a.b.a.b	ENSGT00940000158517	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b	ENSGT00520000055591.a.v.a #22	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00390000000080.a.a.i.b	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414.`b.a.a	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b	ENSGT01030000234621.C.a.a.a	ENSGT00950000182887.C.b.b	ENSGT00940000163684	ENSGT00940000153222.a.b.b.b.b.k.a	ENSGT00940000158195
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	9	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.a.a.c	ENSGT00940000154453.b.a.b.b	ENSGT00390000001432	ENSGT00940000153336.e.a.a.a.b.a.b	ENSGT00940000158517	ENSGT00390000008859.b.d.k.a.b.b	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00390000008820.e.b.a.a.a	ENSGT00900000143202.b	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b	ENSGT00520000055591.a.v.a #22	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00730000111220	ENSGT00390000000080.a.a.i.b	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414.`b.a.a	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b	ENSGT01030000234621.C.a.a.a	ENSGT00950000182887.C.b.b	ENSGT00940000163684	ENSGT00940000153222.a.b.b.b.b.k.a	ENSGT00940000158195
Homo/Pan group	ANCESTRAL SPECIES	9	ENSGT00940000159316	ENSGT00390000014785	ENSGT01090000260082.d.a.a.a.a.c	ENSGT00940000154453.b.a.b.b	ENSGT00390000001432	ENSGT00940000153336.e.a.a.a.b.a.b	ENSGT00940000158517	ENSGT00390000008859.b.d.k.a.b.b	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00390000008820.e.b.a.a.a	ENSGT00900000143202.b	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b	ENSGT00520000055591.a.v.a #22	ENSGT00940000160128	ENSGT00940000154585.b	ENSGT00940000161362	ENSGT00390000000080.a.a.i.b	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414.`b.a.a	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b	ENSGT01030000234621.C.a.a.a	ENSGT00950000182887.C.b.b	ENSGT00940000163684	ENSGT00940000153222.a.b.b.b.b.k.a	ENSGT00940000158195
Pan	ANCESTRAL SPECIES	6	ENSGT00390000014785	ENSGT00530000063721.B.j	ENSGT01090000260082.d.a.a.a.a.c	ENSGT00940000154453.b.a.b.b	ENSGT00390000001432	ENSGT00940000153336.e.a.a.a.b.a.b	ENSGT00940000158517	ENSGT00390000008859.b.d.k.a.b.b	ENSGT00940000153259.a.a.a	ENSGT00940000155516	ENSGT00940000160157	ENSGT00390000008820.e.b.a.a.a	ENSGT00900000143202.b	ENSGT00940000153168.A	ENSGT00950000183061.a.a.a.a.b	ENSGT00520000055591.a.v.a #22	ENSGT00940000160128	ENSGT00940000161362	ENSGT00390000000080.a.a.i.b	ENSGT00730000111220	ENSGT01030000234582.f.a.a.a.b	ENSGT00940000163556	ENSGT00390000002414.`b.a.a	ENSGT01030000234582.f.a.a.a.a	ENSGT01030000234582.f.a.a.b	ENSGT01030000234621.C.a.a.a	ENSGT00950000182887.C.b.b	ENSGT00940000163684	ENSGT00940000153222.a.b.b.b.b.k.a	ENSGT00940000158195	ENSGT00510000047505.c.a
Chimpanzee	MODERN SPECIES	972	LAS1L (ENSPTRG00000021970)	ENSPTRG00000047745	MSN (ENSPTRG00000043871)	ENSPTRG00000048378	ENSPTRG00000052470	VSIG4 (ENSPTRG00000021973)	ENSPTRG00000049274	HEPH (ENSPTRG00000046447)	ENSPTRG00000044272	EDA2R (ENSPTRG00000021977)	AR (ENSPTRG00000032525)	OPHN1 (ENSPTRG00000021979)	ENSPTRG00000051896	YIPF6 (ENSPTRG00000051628)	STARD8 (ENSPTRG00000021982)	ENSPTRG00000048835 #22	EFNB1 (ENSPTRG00000051100)	NALF2 (ENSPTRG00000043476)	EDA (ENSPTRG00000021988)	ENSPTRG00000047182	AWAT2 (ENSPTRG00000021989)	OTUD6A (ENSPTRG00000028260)	IGBP1 (ENSPTRG00000021990)	DGAT2L6 (ENSPTRG00000021991)	AWAT1 (ENSPTRG00000028259)	P2RY4 (ENSPTRG00000034427)	ARR3 (ENSPTRG00000021993)	RAB41 (ENSPTRG00000021994)	PDZD11 (ENSPTRG00000021995)	KIF4A (ENSPTRG00000021996)	ENSPTRG00000008468
Bonobo	MODERN SPECIES	369	ENSPPAG00000029012	MSN (ENSPPAG00000034551)	ENSPPAG00000033953	ENSPPAG00000031010	VSIG4 (ENSPPAG00000033935)	ENSPPAG00000038159	HEPH (ENSPPAG00000037746)	EDA2R (ENSPPAG00000001055)	AR (ENSPPAG00000038688)	OPHN1 (ENSPPAG00000021549)	ENSPPAG00000043601	ENSPPAG00000040306	YIPF6 (ENSPPAG00000041673)	STARD8 (ENSPPAG00000020692)	ENSPPAG00000039447	ENSPPAG00000031265 #22	EFNB1 (ENSPPAG00000040468)	ENSPPAG00000026849	ENSPPAG00000038479	ENSPPAG00000037110	AWAT2 (ENSPPAG00000038307)	OTUD6A (ENSPPAG00000022933)	IGBP1 (ENSPPAG00000042611)	DGAT2L6 (ENSPPAG00000033674)	AWAT1 (ENSPPAG00000042645)	P2RY4 (ENSPPAG00000001712)	ARR3 (ENSPPAG00000029521)	RAB41 (ENSPPAG00000032671)	PDZD11 (ENSPPAG00000040728)	KIF4A (ENSPPAG00000037881)	ENSPPAG00000041566
Orangutan	MODERN SPECIES	242	AMER1 (ENSPPYG00000020412)	ASB12 (ENSPPYG00000020413)	MTMR8 (ENSPPYG00000020414)	ZC4H2 (ENSPPYG00000020415)	ZC3H12B (ENSPPYG00000020416)	LAS1L (ENSPPYG00000020417)	MSN (ENSPPYG00000020419)	ENSPPYG00000035651	VSIG4 (ENSPPYG00000020421)	HEPH (ENSPPYG00000020422)	EDA2R (ENSPPYG00000020424)	AR (ENSPPYG00000020425)	OPHN1 (ENSPPYG00000020426)	YIPF6 (ENSPPYG00000033984)	STARD8 (ENSPPYG00000020428)	ENSPPYG00000031778 #22	EFNB1 (ENSPPYG00000031789)	PJA1 (ENSPPYG00000020429)	NALF2 (ENSPPYG00000020431)	EDA (ENSPPYG00000020432)	ENSPPYG00000032421	ENSPPYG00000034779	AWAT2 (ENSPPYG00000020433)	OTUD6A (ENSPPYG00000020434)	IGBP1 (ENSPPYG00000020435)	DGAT2L6 (ENSPPYG00000020436)	AWAT1 (ENSPPYG00000020437)	P2RY4 (ENSPPYG00000036141)	ARR3 (ENSPPYG00000020927)	RAB41 (ENSPPYG00000020928)	PDZD11 (ENSPPYG00000020929)
Hominidae	ANCESTRAL SPECIES																	ENSGT00520000055591.a.v.b #22
Orangutan	MODERN SPECIES		NEGR1 (ENSPPYG00000001239)	ZRANB2 (ENSPPYG00000001240) #8	PTGER3 (ENSPPYG00000001241) #9	ENSPPYG00000037732	CTH (ENSPPYG00000001242) #10	ENSPPYG00000001243	ANKRD13C (ENSPPYG00000001244) #11	SRSF11 (ENSPPYG00000001245) #13	LRRC40 (ENSPPYG00000001246) #14	LRRC7 (ENSPPYG00000001247) #15	DEPDC1 (ENSPPYG00000001248) #17	RPE65 (ENSPPYG00000001249) #18	WLS (ENSPPYG00000001251) #19	DIRAS3 (ENSPPYG00000001252) #20	GADD45A (ENSPPYG00000001254) #21	ENSPPYG00000001256 #22	IL12RB2 (ENSPPYG00000001257) #23	IL23R (ENSPPYG00000001258) #25	C1orf141 (ENSPPYG00000001259) #26	SLC35D1 (ENSPPYG00000041264) #27	MIER1 (ENSPPYG00000001261) #29	DNAI4 (ENSPPYG00000001262) #30	INSL5 (ENSPPYG00000001263) #31	DYNLT5 (ENSPPYG00000001264) #32	SGIP1 (ENSPPYG00000001265) #33	PDE4B (ENSPPYG00000001266) #34	LEPR (ENSPPYG00000001267) #35	LEPROT (ENSPPYG00000035587) #36	DNAJC6 (ENSPPYG00000010671) #37	AK4 (ENSPPYG00000001269)	JAK1 (ENSPPYG00000001270)
Gibbon	MODERN SPECIES	2	CTH (ENSNLEG00000009419) #10	ENSNLEG00000027424	ANKRD13C (ENSNLEG00000033393) #11	SRSF11 (ENSNLEG00000009400) #13	LRRC40 (ENSNLEG00000009378) #14	LRRC7 (ENSNLEG00000009348) #15	ENSNLEG00000029046	ENSNLEG00000029967	DEPDC1 (ENSNLEG00000009334) #17	RPE65 (ENSNLEG00000009313) #18	ENSNLEG00000034379	WLS (ENSNLEG00000009266) #19	DIRAS3 (ENSNLEG00000029641) #20	GNG12 (ENSNLEG00000032969)	GADD45A (ENSNLEG00000009242) #21	SERBP1 (ENSNLEG00000009237) #22	IL12RB2 (ENSNLEG00000009216) #23	IL23R (ENSNLEG00000009199) #25
Platyrrhini	ANCESTRAL SPECIES		ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00410000028138	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b.r #13	ENSGT00910000148470	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a.l #17	ENSGT00950000182913.B #18	ENSGT00940000155162.c.a.b	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00910000147273	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00940000154205.h.ab.b	ENSGT00530000064198 #25	ENSGT00390000004428.a.g.b.e.a	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	1222	PTGER3 (ENSANAG00000038521) #9	CTH (ENSANAG00000038461) #10	ENSANAG00000035214	ENSANAG00000030751 #11	ENSANAG00000034053	ENSANAG00000018690 #13	LRRC40 (ENSANAG00000028455) #14	LRRC7 (ENSANAG00000025151) #15	DEPDC1 (ENSANAG00000029940) #17	RPE65 (ENSANAG00000038489) #18	ENSANAG00000037963	WLS (ENSANAG00000035453) #19	GNG12 (ENSANAG00000036464)	ENSANAG00000033493	GADD45A (ENSANAG00000024828) #21	ENSANAG00000022432 #22	IL12RB2 (ENSANAG00000033363) #23	ENSANAG00000035913	IL23R (ENSANAG00000036542) #25	ENSANAG00000024382	C1orf141 (ENSANAG00000029861) #26	SLC35D1 (ENSANAG00000035895) #27	MIER1 (ENSANAG00000036304) #29	DNAI4 (ENSANAG00000035289) #30	INSL5 (ENSANAG00000038322) #31	DYNLT5 (ENSANAG00000025126) #32	SGIP1 (ENSANAG00000035883) #33	PDE4B (ENSANAG00000035391) #34	LEPR (ENSANAG00000003036) #35	ENSANAG00000022325	LEPROT (ENSANAG00000022539) #36
Mas night monkey	MODERN SPECIES	657															ENSANAG00000023377	ENSANAG00000034816 #22	SPIDR (ENSANAG00000029053)	ENSANAG00000029937	CEBPD (ENSANAG00000022717)	PRKDC (ENSANAG00000028345)	MCM4 (ENSANAG00000026411)	ENSANAG00000024543	ENSANAG00000027457	CLXN (ENSANAG00000032509)	SNAI2 (ENSANAG00000021163)	PPDPFL (ENSANAG00000022280)	SNTG1 (ENSANAG00000024114)	PXDNL (ENSANAG00000025434)	ENSANAG00000024030	PCMTD1 (ENSANAG00000003477)	ST18 (ENSANAG00000030299)
Cebidae	ANCESTRAL SPECIES	1	ENSGT00730000111078.o.a #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00410000028138	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b.r #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a.l #17	ENSGT00950000182913.B #18	ENSGT00940000155162.c.a.b	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00910000147273	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00940000154205.h.ab.b	ENSGT00530000064198 #25	ENSGT00390000004428.a.g.b.e.a	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37
Cebidae_a	DUPLICATION
Cebidae_a	ANCESTRAL SPECIES		ENSGT00730000111078.o.a #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00410000028138	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b.r #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a.l #17	ENSGT00950000182913.B #18	ENSGT00940000155162.c.a.b	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00910000147273	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a.q #22	ENSGT00940000159829 #23	ENSGT00940000154205.h.ab.b	ENSGT00530000064198 #25	ENSGT00390000004428.a.g.b.e.a	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37
Capuchin	DUPLICATION
Capuchin	DUPLICATION
Capuchin	MODERN SPECIES	3	ENSCCAG00000020484	ENSCCAG00000027424	ANKRD13C (ENSCCAG00000025154) #11	ENSCCAG00000036133 #13	LRRC40 (ENSCCAG00000028127) #14	LRRC7 (ENSCCAG00000001437) #15	ENSCCAG00000029910	ENSCCAG00000022447	DEPDC1 (ENSCCAG00000037389) #17	RPE65 (ENSCCAG00000028501) #18	ENSCCAG00000035780	WLS (ENSCCAG00000031004) #19	GNG12 (ENSCCAG00000035811)	ENSCCAG00000022553	GADD45A (ENSCCAG00000037220) #21	ENSCCAG00000018061 #22	IL12RB2 (ENSCCAG00000018901) #23	ENSCCAG00000031024	IL23R (ENSCCAG00000026286) #25	ENSCCAG00000028263	C1orf141 (ENSCCAG00000037706) #26	ENSCCAG00000032359	SLC35D1 (ENSCCAG00000029977) #27	MIER1 (ENSCCAG00000031798) #29	DNAI4 (ENSCCAG00000028639) #30	INSL5 (ENSCCAG00000030022) #31	DYNLT5 (ENSCCAG00000030457) #32	SGIP1 (ENSCCAG00000024793) #33
Capuchin	MODERN SPECIES	63	LPCAT2 (ENSCCAG00000033939)	MMP2 (ENSCCAG00000021698)	IRX6 (ENSCCAG00000035521)	IRX5 (ENSCCAG00000035591)	ENSCCAG00000035759	ENSCCAG00000033265	IRX3 (ENSCCAG00000029708)	FTO (ENSCCAG00000025984)	RPGRIP1L (ENSCCAG00000026356)	AKTIP (ENSCCAG00000034526)	RBL2 (ENSCCAG00000035540)	CHD9 (ENSCCAG00000036178)	ENSCCAG00000022180	ENSCCAG00000020240	TOX3 (ENSCCAG00000024480)	ENSCCAG00000022165 #22	ENSCCAG00000022450	ENSCCAG00000021070	SALL1 (ENSCCAG00000001639)	CYLD (ENSCCAG00000030271)	NOD2 (ENSCCAG00000034885)	ENSCCAG00000026084	SNX20 (ENSCCAG00000036877)	NKD1 (ENSCCAG00000033942)	ENSCCAG00000011713	BRD7 (ENSCCAG00000023437)	ADCY7 (ENSCCAG00000023487)	TENT4B (ENSCCAG00000035345)	HEATR3 (ENSCCAG00000031847)	ENSCCAG00000035613	ZNF423 (ENSCCAG00000009645)
Capuchin	MODERN SPECIES	45	CDCA7L (ENSCCAG00000021172)	ENSCCAG00000037585	DNAH11 (ENSCCAG00000035150)	ENSCCAG00000035249	SP4 (ENSCCAG00000030472)	ENSCCAG00000033872	SP8 (ENSCCAG00000030995)	ABCB5 (ENSCCAG00000031192)	ITGB8 (ENSCCAG00000037918)	MACC1 (ENSCCAG00000013469)	TMEM196 (ENSCCAG00000030192)	POLR1F (ENSCCAG00000026416)	ENSCCAG00000020115	ENSCCAG00000019905	HDAC9 (ENSCCAG00000020834)	ENSCCAG00000027532 #22	SNX13 (ENSCCAG00000030831)	ENSCCAG00000013414	AHR (ENSCCAG00000027846)	AGR3 (ENSCCAG00000035875)	AGR2 (ENSCCAG00000037867)	TSPAN13 (ENSCCAG00000020472)	BZW2 (ENSCCAG00000028749)	ANKMY2 (ENSCCAG00000038043)	LRRC72 (ENSCCAG00000031114)	ENSCCAG00000015833	SOSTDC1 (ENSCCAG00000014167)	ENSCCAG00000035776	ENSCCAG00000028518	CRPPA (ENSCCAG00000033258)
Bolivian squirrel monkey	MODERN SPECIES	45	ENSSBOG00000013268 #8	PTGER3 (ENSSBOG00000032109) #9	CTH (ENSSBOG00000004834) #10	ENSSBOG00000033163	ANKRD13C (ENSSBOG00000035265) #11	SRSF11 (ENSSBOG00000033461) #13	LRRC40 (ENSSBOG00000033042) #14	LRRC7 (ENSSBOG00000023202) #15	ENSSBOG00000024654	DEPDC1 (ENSSBOG00000032526) #17	RPE65 (ENSSBOG00000020711) #18	ENSSBOG00000017047	WLS (ENSSBOG00000029071) #19	GNG12 (ENSSBOG00000023413)	GADD45A (ENSSBOG00000026960) #21	SERBP1 (ENSSBOG00000034290) #22	IL12RB2 (ENSSBOG00000033618) #23	IL23R (ENSSBOG00000031496) #25	C1orf141 (ENSSBOG00000020938) #26	SLC35D1 (ENSSBOG00000033454) #27	MIER1 (ENSSBOG00000023688) #29	DNAI4 (ENSSBOG00000021867) #30	INSL5 (ENSSBOG00000021914) #31	DYNLT5 (ENSSBOG00000026948) #32	SGIP1 (ENSSBOG00000032865) #33	PDE4B (ENSSBOG00000028805) #34	LEPR (ENSSBOG00000024199) #35	ENSSBOG00000012974	LEPROT (ENSSBOG00000027406) #36	DNAJC6 (ENSSBOG00000032291) #37	ENSSBOG00000015490
Cebidae_a	ANCESTRAL SPECIES																	ENSGT00520000055591.a.r #22
Capuchin	MODERN SPECIES	325										CYP19A1 (ENSCCAG00000022272)	GLDN (ENSCCAG00000027562)	DMXL2 (ENSCCAG00000031705)	SCG3 (ENSCCAG00000018814)	LYSMD2 (ENSCCAG00000037360)	TMOD2 (ENSCCAG00000022858)	ENSCCAG00000038068 #22	TMOD3 (ENSCCAG00000036997)	LEO1 (ENSCCAG00000025911)	MAPK6 (ENSCCAG00000026546)	ENSCCAG00000031947	GNB5 (ENSCCAG00000034924)	MYO5C (ENSCCAG00000032934)	ENSCCAG00000032533	ENSCCAG00000034030	ENSCCAG00000025828	MYO5A (ENSCCAG00000001972)	ARPP19 (ENSCCAG00000022191)	FAM214A (ENSCCAG00000032913)	ONECUT1 (ENSCCAG00000027805)	ENSCCAG00000037326	WDR72 (ENSCCAG00000026897)
Marmoset	DUPLICATION
Marmoset	MODERN SPECIES	19	SRSF11 (ENSCJAG00000017704) #13	LRRC40 (ENSCJAG00000017669) #14	ENSCJAG00000071796	ENSCJAG00000043397	LRRC7 (ENSCJAG00000017648) #15	ENSCJAG00000083418	ENSCJAG00000084344	DEPDC1 (ENSCJAG00000017579) #17	RPE65 (ENSCJAG00000017542) #18	ENSCJAG00000041466	ENSCJAG00000079987	WLS (ENSCJAG00000017517) #19	GNG12 (ENSCJAG00000077874)	GADD45A (ENSCJAG00000083486) #21	IL12RB2 (ENSCJAG00000017427) #23	ENSCJAG00000017440 #22	IL23R (ENSCJAG00000017407) #25	ENSCJAG00000031526	C1orf141 (ENSCJAG00000017398) #26	SLC35D1 (ENSCJAG00000017361) #27	MIER1 (ENSCJAG00000017276) #29	DNAI4 (ENSCJAG00000017231) #30	DYNLT5 (ENSCJAG00000039041) #32	SGIP1 (ENSCJAG00000017101) #33	PDE4B (ENSCJAG00000017022) #34	LEPR (ENSCJAG00000016945) #35	LEPROT (ENSCJAG00000039286) #36	DNAJC6 (ENSCJAG00000016859) #37	ENSCJAG00000046466	JAK1 (ENSCJAG00000016743)	RAVER2 (ENSCJAG00000016724)
Marmoset	MODERN SPECIES	3	ENSCJAG00000074077	TNKS2 (ENSCJAG00000008230)	PPP1R3C (ENSCJAG00000075367)	HECTD2 (ENSCJAG00000010937)	ENSCJAG00000070442	PCGF5 (ENSCJAG00000011001)	ANKRD1 (ENSCJAG00000011021)	RPP30 (ENSCJAG00000011045)	HTR7 (ENSCJAG00000011075)	ENSCJAG00000085126	KIF20B (ENSCJAG00000011110)	PANK1 (ENSCJAG00000011177)	SLC16A12 (ENSCJAG00000039416)	IFIT5 (ENSCJAG00000011216)	ENSCJAG00000069816	ENSCJAG00000035375 #22	IFIT1 (ENSCJAG00000005746)	IFIT3 (ENSCJAG00000005737)	LIPA (ENSCJAG00000005689)	FAS (ENSCJAG00000005615)	ACTA2 (ENSCJAG00000005576)	STAMBPL1 (ENSCJAG00000005484)	ANKRD22 (ENSCJAG00000052310)	LIPM (ENSCJAG00000005454)	LIPN (ENSCJAG00000005432)	LIPK (ENSCJAG00000005403)	LIPF (ENSCJAG00000005360)	RNLS (ENSCJAG00000045289)	ENSCJAG00000040914	ENSCJAG00000061153	ATAD1 (ENSCJAG00000005296)
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	1044																SERBP1 (ENSTSYG00000011047) #22	IL12RB2 (ENSTSYG00000011026) #23	IL23R (ENSTSYG00000007136) #25	ENSTSYG00000028375
Tarsier	MODERN SPECIES	6202												IL21 (ENSTSYG00000002228)	IL2 (ENSTSYG00000029960)	ADAD1 (ENSTSYG00000008859)	BLTP1 (ENSTSYG00000010806)	ENSTSYG00000037220 #22	TRPC3 (ENSTSYG00000013045)	BBS7 (ENSTSYG00000002690)	CCNA2 (ENSTSYG00000002684)	EXOSC9 (ENSTSYG00000002664)	ENSTSYG00000034999	ANXA5 (ENSTSYG00000006323)
Strepsirrhini	DUPLICATION
Strepsirrhini	ANCESTRAL SPECIES																	ENSGT00520000055591.a.k #22
Bushbaby	MODERN SPECIES	283																ENSOGAG00000028259 #22	TGFB2 (ENSOGAG00000010182)	RRP15 (ENSOGAG00000010180)	ENSOGAG00000024461	GPATCH2 (ENSOGAG00000004485)	ESRRG (ENSOGAG00000014802)	USH2A (ENSOGAG00000014786)	KCTD3 (ENSOGAG00000014778)	ENSOGAG00000008190
Strepsirrhini	DUPLICATION
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a.l.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00910000148214	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568
Lemuriformes	ANCESTRAL SPECIES		ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312.ab #10	ENSGT00390000000312.`b #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a.l.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00910000148214	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568
Lemuriformes_a	ANCESTRAL SPECIES	20										ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a.l.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092
Coquerels sifaka	MODERN SPECIES	577											DEPDC1 (ENSPCOG00000023927) #17	RPE65 (ENSPCOG00000017897) #18	WLS (ENSPCOG00000023967) #19	ENSPCOG00000003500	GADD45A (ENSPCOG00000023251) #21	SERBP1 (ENSPCOG00000022373) #22	IL12RB2 (ENSPCOG00000016862) #23	IL23R (ENSPCOG00000028626) #25	C1orf141 (ENSPCOG00000019432) #26	SLC35D1 (ENSPCOG00000005606) #27	MIER1 (ENSPCOG00000015234) #29	DNAI4 (ENSPCOG00000019993) #30	INSL5 (ENSPCOG00000000197) #31	DYNLT5 (ENSPCOG00000014105) #32	SGIP1 (ENSPCOG00000027133) #33	PDE4B (ENSPCOG00000024642) #34
Greater bamboo lemur	MODERN SPECIES	900							ENSPSMG00000015769	ENSPSMG00000015751	DEPDC1 (ENSPSMG00000015719) #17	RPE65 (ENSPSMG00000015666) #18	ENSPSMG00000015630	WLS (ENSPSMG00000015496) #19	DIRAS3 (ENSPSMG00000015308) #20	GNG12 (ENSPSMG00000015293)	GADD45A (ENSPSMG00000015275) #21	SERBP1 (ENSPSMG00000015242) #22
Mouse lemur	MODERN SPECIES	11	PTGER3 (ENSMICG00000011907) #9	ENSMICG00000043640	ENSMICG00000037474	ENSMICG00000045385 #10	ENSMICG00000016361 #10	ANKRD13C (ENSMICG00000016341) #11	SRSF11 (ENSMICG00000005537) #13	LRRC40 (ENSMICG00000046390) #14	LRRC7 (ENSMICG00000005504) #15	DEPDC1 (ENSMICG00000002794) #17	RPE65 (ENSMICG00000002782) #18	WLS (ENSMICG00000010218) #19	ENSMICG00000026786	GNG12 (ENSMICG00000045755)	GADD45A (ENSMICG00000037822) #21	ENSMICG00000017733 #22	IL12RB2 (ENSMICG00000017732) #23	ENSMICG00000046171	IL23R (ENSMICG00000000494) #25	C1orf141 (ENSMICG00000004483) #26	SLC35D1 (ENSMICG00000004473) #27	MIER1 (ENSMICG00000004461) #29	ENSMICG00000043215 #30	INSL5 (ENSMICG00000047927) #31	DYNLT5 (ENSMICG00000046099) #32	ENSMICG00000035331	SGIP1 (ENSMICG00000004414) #33	ENSMICG00000044205	PDE4B (ENSMICG00000008570) #34	ENSMICG00000028091	LEPR (ENSMICG00000012143) #35
Bushbaby	MODERN SPECIES	125	ZRANB2 (ENSOGAG00000000485) #8	PTGER3 (ENSOGAG00000025169) #9	ENSOGAG00000031530	ANKRD13C (ENSOGAG00000027080) #11	SRSF11 (ENSOGAG00000003392) #13	LRRC40 (ENSOGAG00000003387) #14	ENSOGAG00000003378 #15	ENSOGAG00000034352 #15	ENSOGAG00000029567	DEPDC1 (ENSOGAG00000000934) #17	RPE65 (ENSOGAG00000000937) #18	WLS (ENSOGAG00000003735) #19	DIRAS3 (ENSOGAG00000003734) #20	GNG12 (ENSOGAG00000004629)	GADD45A (ENSOGAG00000032078) #21	SERBP1 (ENSOGAG00000025884) #22	IL12RB2 (ENSOGAG00000000809) #23	ENSOGAG00000006646 #25	SLC35D1 (ENSOGAG00000006641) ##27	MIER1 (ENSOGAG00000006638) #29	DNAI4 (ENSOGAG00000006629) #30	DYNLT5 (ENSOGAG00000006625) #32	SGIP1 (ENSOGAG00000006617) #33	PDE4B (ENSOGAG00000016848) #34	LEPR (ENSOGAG00000006040) #35	LEPROT (ENSOGAG00000027631) #36	DNAJC6 (ENSOGAG00000016026) #37	ENSOGAG00000016024	JAK1 (ENSOGAG00000011160)	RAVER2 (ENSOGAG00000011157)	CACHD1 (ENSOGAG00000011152)
Strepsirrhini	ANCESTRAL SPECIES																	ENSGT00520000055591.a.l.b #22
Lemuriformes	ANCESTRAL SPECIES																	ENSGT00520000055591.a.l.b #22
Mouse lemur	MODERN SPECIES	169	ENSMICG00000042966	DCAF12L2 (ENSMICG00000004409)	PRR32 (ENSMICG00000000543)	ENSMICG00000011704	ENSMICG00000042684	ENSMICG00000026701	ENSMICG00000037227	ENSMICG00000027085	SMARCA1 (ENSMICG00000015768)	OCRL (ENSMICG00000015790)	APLN (ENSMICG00000043883)	ENSMICG00000036721	XPNPEP2 (ENSMICG00000015814)	SASH3 (ENSMICG00000026483)	ZDHHC9 (ENSMICG00000015847)	ENSMICG00000032019 #22	ENSMICG00000005161	BCORL1 (ENSMICG00000015994)	ELF4 (ENSMICG00000007427)	ENSMICG00000016006	RAB33A (ENSMICG00000034851)	ZNF280C (ENSMICG00000010604)	ENSMICG00000015126	ENSMICG00000031524	RBMX2 (ENSMICG00000015139)	ENSMICG00000047639	ENSMICG00000046419	ENSMICG00000045087	ENOX2 (ENSMICG00000000062)	ENSMICG00000032388	ARHGAP36 (ENSMICG00000001343)
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT01010000228719	ENSGT00940000156968 #14	ENSGT00960000186843	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092
Tree shrew	MODERN SPECIES	2594														GNG12 (ENSTBEG00000003964)	GADD45A (ENSTBEG00000003869) #21	SERBP1 (ENSTBEG00000003689) #22	IL12RB2 (ENSTBEG00000003548) #23	IL23R (ENSTBEG00000003384) #25	ENSTBEG00000003370 #26	SLC35D1 (ENSTBEG00000003275) #27	MIER1 (ENSTBEG00000003139) #29	DNAI4 (ENSTBEG00000002658) #30
Glires	ANCESTRAL SPECIES		ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT01010000228719	ENSGT00940000156968 #14	ENSGT00960000186843	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092
Lagomorpha	ANCESTRAL SPECIES	8	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00900000141068.t	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000165286	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092
Rabbit	MODERN SPECIES	4	ZRANB2 (ENSOCUG00000004640) #8	PTGER3 (ENSOCUG00000004633) #9	ENSOCUG00000027801	CTH (ENSOCUG00000007526) #10	ANKRD13C (ENSOCUG00000002007) #11	ENSOCUG00000002001 #13	LRRC40 (ENSOCUG00000001994) #14	ENSOCUG00000001980	ENSOCUG00000029470 #15	ENSOCUG00000013658 #17	RPE65 (ENSOCUG00000013644) #18	WLS (ENSOCUG00000000532) #19	ENSOCUG00000024881 #20	GNG12 (ENSOCUG00000024324)	GADD45A (ENSOCUG00000008954) #21	SERBP1 (ENSOCUG00000008946) #22	IL12RB2 (ENSOCUG00000008934) #23	ENSOCUG00000008927	IL23R (ENSOCUG00000008918) #25	ENSOCUG00000035679	ENSOCUG00000037276	C1orf141 (ENSOCUG00000012268) #26	SLC35D1 (ENSOCUG00000015456) #27	MIER1 (ENSOCUG00000015438) #29	DNAI4 (ENSOCUG00000021747) #30	ENSOCUG00000034617	INSL5 (ENSOCUG00000004666) #31	DYNLT5 (ENSOCUG00000004662) #32	SGIP1 (ENSOCUG00000027478) #33	PDE4B (ENSOCUG00000006508) #34	ENSOCUG00000027060
Pika	MODERN SPECIES	4611														GNG12 (ENSOPRG00000006444)	GADD45A (ENSOPRG00000006440) #21	SERBP1 (ENSOPRG00000006434) #22	IL12RB2 (ENSOPRG00000006419) #23
Rodentia	ANCESTRAL SPECIES		ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT01010000228719	ENSGT00940000156968 #14	ENSGT00960000186843	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092
Rodentia_B	ANCESTRAL SPECIES		ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00960000186843	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092
Myomorpha	ANCESTRAL SPECIES	78														ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25
Muroidea	ANCESTRAL SPECIES	74	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT01070000253744.a.b	ENSGT00510000046908.a.a.b	ENSGT00390000007586.a.b	ENSGT00940000158340	ENSGT00940000153395.a	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25
Muroidea_A	ANCESTRAL SPECIES	4	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT01070000253744.a.b	ENSGT00510000046908.a.a.b	ENSGT00390000007586.a.b	ENSGT00940000158340	ENSGT00940000163656	ENSGT00940000153395.a	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000018245.d	ENSGT00940000153094.m.b	ENSGT00390000004352	ENSGT00940000158121	ENSGT00390000012177	ENSGT00940000162575	ENSGT00940000158503	ENSGT00940000155135	ENSGT00940000156114	ENSGT00940000162565	ENSGT00960000189758	ENSGT00940000168371	ENSGT00510000048998
Cricetidae	ANCESTRAL SPECIES	3	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT01070000253744.a.b	ENSGT00510000046908.a.a.b	ENSGT00390000007586.a.b	ENSGT00940000158340	ENSGT00940000163656	ENSGT00940000153395.a	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000018245.d	ENSGT00940000153094.m.b.a.a.a	ENSGT00390000004352	ENSGT00940000158121	ENSGT00390000012177	ENSGT00940000162575	ENSGT00940000158503	ENSGT00940000155135	ENSGT00940000156114	ENSGT00940000162565	ENSGT00960000189758	ENSGT00510000048998	ENSGT00940000156588
Cricetidae_B	ANCESTRAL SPECIES	10	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT01070000253744.a.b	ENSGT00510000046908.a.a.b	ENSGT00390000007586.a.b	ENSGT00940000158340	ENSGT00940000153395.a	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000018245.d	ENSGT00940000153094.m.b.a.a.a	ENSGT00390000004352	ENSGT00940000158121	ENSGT00390000012177	ENSGT00940000162575	ENSGT00940000158503	ENSGT00940000155135	ENSGT00940000156114	ENSGT00940000162565	ENSGT00960000189758	ENSGT00510000048998	ENSGT00940000156588
Northern American deer mouse	MODERN SPECIES	16	ENSPEMG00000028988	ENSPEMG00000028408	Grid2 (ENSPEMG00000029150)	Atoh1 (ENSPEMG00000001659)	Smarcad1 (ENSPEMG00000001854)	Hpgds (ENSPEMG00000011127)	Qrfprl (ENSPEMG00000019610)	Tnip3 (ENSPEMG00000019457)	Ndnf (ENSPEMG00000010763)	Prdm5 (ENSPEMG00000019722)	4930544G11Rik (ENSPEMG00000022849)	ENSPEMG00000027522	Mad2l1 (ENSPEMG00000021067)	Gng12 (ENSPEMG00000025022)	Gadd45a (ENSPEMG00000022414) #21	Serbp1 (ENSPEMG00000021232) #22	Il12rb2 (ENSPEMG00000021493) #23	Il23r (ENSPEMG00000020840) #25	Tacstd2 (ENSPEMG00000003281)	ENSPEMG00000031157	ENSPEMG00000027204	ENSPEMG00000027512	ENSPEMG00000031070	ENSPEMG00000031262	ENSPEMG00000026042	ENSPEMG00000025113	ENSPEMG00000024718	ENSPEMG00000019361	ENSPEMG00000024788	Igkc (ENSPEMG00000030073)	Rpia (ENSPEMG00000010996)
Prairie vole	MODERN SPECIES	353	Maoa (ENSMOCG00000007575)	ENSMOCG00000017653	ENSMOCG00000013942	Atoh1 (ENSMOCG00000007284)	ENSMOCG00000009573	Smarcad1 (ENSMOCG00000017142)	Hpgds (ENSMOCG00000006347)	Qrfprl (ENSMOCG00000012303)	Tnip3 (ENSMOCG00000020430)	Ndnf (ENSMOCG00000013511)	Prdm5 (ENSMOCG00000016267)	Mad2l1 (ENSMOCG00000011109)	ENSMOCG00000019752	Gng12 (ENSMOCG00000017337)	Gadd45a (ENSMOCG00000014496) #21	Serbp1 (ENSMOCG00000015573) #22	Il12rb2 (ENSMOCG00000022701) #23	Il23r (ENSMOCG00000010821) #25	Tacstd2 (ENSMOCG00000008197)	Kcns3 (ENSMOCG00000007505)	Rdh14 (ENSMOCG00000005865)	Nt5c1b (ENSMOCG00000020580)	ENSMOCG00000013225	Osr1 (ENSMOCG00000012793)	ENSMOCG00000007598	Ttc32 (ENSMOCG00000021911)	Wdr35 (ENSMOCG00000001393)	Matn3 (ENSMOCG00000013872)	Laptm4a (ENSMOCG00000013181)	ENSMOCG00000012688	Sdc1 (ENSMOCG00000019532)
Cricetinae	ANCESTRAL SPECIES	8	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00510000046908.a.a.b	ENSGT00390000007586.a.b	ENSGT00940000158340	ENSGT00940000163656	ENSGT00940000153395.a	ENSGT01030000234553.b.b.d.c.a.j.b	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000018245.d	ENSGT00940000153770.s.b.a.b.j	ENSGT00390000004352	ENSGT00940000158121	ENSGT00390000012177	ENSGT00940000162575	ENSGT00940000158503	ENSGT00940000155135	ENSGT00940000156114	ENSGT00940000162565	ENSGT00510000048998	ENSGT00940000156588	ENSGT00940000153203.A.b
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	258	Atoh1 (ENSCGRG00001015957)	Smarcad1 (ENSCGRG00001015056)	Hpgds (ENSCGRG00001011770)	Qrfprl (ENSCGRG00001010782)	Tnip3 (ENSCGRG00001000396)	Ndnf (ENSCGRG00001021230)	Prdm5 (ENSCGRG00001010581)	4930544G11Rik (ENSCGRG00001013500)	Mad2l1 (ENSCGRG00001012165)	ENSCGRG00001015322	ENSCGRG00001015231	ENSCGRG00001011328	ENSCGRG00001015392	Gng12 (ENSCGRG00001009920)	GADD45A (ENSCGRG00001022826) #21	ENSCGRG00001016800 #22	ENSCGRG00001022516 #23	Il23r (ENSCGRG00001014663) #25	Tacstd2 (ENSCGRG00001014553)	ENSCGRG00001005025	ENSCGRG00001015659	Nat8 (ENSCGRG00001014825)	ENSCGRG00001021071	ENSCGRG00001014806	Alms1 (ENSCGRG00001012187)	Egr4 (ENSCGRG00001019685)	Fbxo41 (ENSCGRG00001012368)	Cct7 (ENSCGRG00001010276)	Pradc1 (ENSCGRG00001000839)	Smyd5 (ENSCGRG00001020548)	Noto (ENSCGRG00001019719)
Chinese hamster chok1gshd	MODERN SPECIES	188	Acvr2a (ENSCGRG00001024754)	ENSCGRG00001000890	Zeb2 (ENSCGRG00001003812)	ENSCGRG00001006690	Gtdc1 (ENSCGRG00001014426)	ENSCGRG00001008381	Arhgap15 (ENSCGRG00001011371)	Kynu (ENSCGRG00001005556)	ENSCGRG00001012428	ENSCGRG00001009004	ENSCGRG00001024491	Nxph2 (ENSCGRG00001024840)	Spopl (ENSCGRG00001010346)	ENSCGRG00001008614	ENSCGRG00001024843	ENSCGRG00001001542 #22	ENSCGRG00001009248	Tbpl2 (ENSCGRG00001015310)	ENSCGRG00001015320	Il36a (ENSCGRG00001005772)	ENSCGRG00001008839	Il36b (ENSCGRG00001008679)	Il36rn (ENSCGRG00001010036)	Il1f10 (ENSCGRG00001003880)	Il1rn (ENSCGRG00001005108)	Psd4 (ENSCGRG00001010714)	Pax8 (ENSCGRG00001017508)	Cacna1b (ENSCGRG00001018788)	Ehmt1 (ENSCGRG00001002035)	Arrdc1 (ENSCGRG00001003052)	Zmynd19 (ENSCGRG00001007529)
Golden Hamster	MODERN SPECIES	675	Ccser1 (ENSMAUG00000001007)	Grid2 (ENSMAUG00000001680)	Atoh1 (ENSMAUG00000016206)	Smarcad1 (ENSMAUG00000008417)	Hpgds (ENSMAUG00000000292)	ENSMAUG00000001139	Qrfprl (ENSMAUG00000002934)	ENSMAUG00000005208	Tnip3 (ENSMAUG00000007890)	Ndnf (ENSMAUG00000010069)	Prdm5 (ENSMAUG00000006768)	4930544G11Rik (ENSMAUG00000016259)	Mad2l1 (ENSMAUG00000012179)	ENSMAUG00000019235	Gadd45a (ENSMAUG00000013029) #21	Serbp1 (ENSMAUG00000013517) #22	ENSMAUG00000012848 #23	Il23r (ENSMAUG00000014424) #25	Tacstd2 (ENSMAUG00000016395)	ENSMAUG00000016422	ENSMAUG00000014450	ENSMAUG00000016790	ENSMAUG00000017110	ENSMAUG00000016284	Rpia (ENSMAUG00000017330)	Eif2ak3 (ENSMAUG00000000558)	Tex37 (ENSMAUG00000008222)	Foxi3 (ENSMAUG00000010256)	Thnsl2 (ENSMAUG00000000713)	Fabp1 (ENSMAUG00000000101)	ENSMAUG00000000866
Murinae	ANCESTRAL SPECIES	4	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT01070000253744.a.b	ENSGT00510000046908.a.a.b	ENSGT00390000007586.a.b	ENSGT00940000158340	ENSGT00940000163656	ENSGT00940000153395.a	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.a	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000018245.d	ENSGT00940000153094.n	ENSGT00940000163478	ENSGT00390000004352	ENSGT00940000158121	ENSGT00390000012177	ENSGT00940000162575	ENSGT00940000158503	ENSGT00940000155135	ENSGT00940000156114	ENSGT00940000162565	ENSGT00960000189758	ENSGT00940000168371
Mus	ANCESTRAL SPECIES	12	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT01070000253744.a.b	ENSGT00510000046908.a.a.b	ENSGT00390000007586.a.b	ENSGT00940000158340	ENSGT00940000163656	ENSGT00940000153395.a	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.a	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000018245.d	ENSGT00950000186518	ENSGT00950000186487	ENSGT00950000186503	ENSGT00950000186509	ENSGT00950000186538	ENSGT00940000163478	ENSGT00390000004352	ENSGT00940000158121	ENSGT00390000012177	ENSGT00940000162575	ENSGT00940000158503	ENSGT00940000155135
Mus_A	ANCESTRAL SPECIES	7	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT01070000253744.a.b	ENSGT00510000046908.a.a.b	ENSGT00390000007586.a.b	ENSGT00940000158340	ENSGT00940000163656	ENSGT00940000153395.a	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.a.b	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.a.a.b.b.a	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.a.a.b.b.b	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000018245.d	ENSGT00940000154279.e.b.c.b.b	ENSGT00940000153924.n.d.c.b.b.a	ENSGT00840000130051.c.a.a.a	ENSGT00940000153924.n.d.c.a.b.b.d.a	ENSGT00940000154279.e.a.b	ENSGT00940000153770.s.b.a.a.s	ENSGT00940000163546.f.a.b	ENSGT00950000186518	ENSGT00950000186487	ENSGT00950000186503	ENSGT00950000186509	ENSGT00950000186538
Mus_B	ANCESTRAL SPECIES	20	ENSGT00940000160278	ENSGT01070000253744.a.b	ENSGT00510000046908.a.a.b	ENSGT00390000007586.a.b	ENSGT00940000158340	ENSGT00940000163656	ENSGT00940000153395.a	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.a.b	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.a.a.b.a	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.a.a.a.b	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.a.a.a.a.a	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.a.a.b.b.a	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.a.a.b.b.b	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000018245.d
Mouse	MODERN SPECIES	15	Tnip3 (ENSMUSG00000044162)	Ndnf (ENSMUSG00000049001)	Prdm5 (ENSMUSG00000029913)	4930544G11Rik (ENSMUSG00000036463)	Mad2l1 (ENSMUSG00000029910)	Vmn1r32 (ENSMUSG00000062905)	Vmn1r33 (ENSMUSG00000059375)	Vmn1r34 (ENSMUSG00000091012)	Vmn1r35 (ENSMUSG00000060699)	Vmn1r36 (ENSMUSG00000115482)	Vmn1r37 (ENSMUSG00000115467)	Vmn1r38 (ENSMUSG00000115170)	Vmn1r39 (ENSMUSG00000093755)	Gng12 (ENSMUSG00000036402)	Gadd45a (ENSMUSG00000036390) #21	Serbp1 (ENSMUSG00000036371) #22	Il12rb2 (ENSMUSG00000018341) #23	Il23r (ENSMUSG00000049093) #25	Tacstd2 (ENSMUSG00000051397)	Igkv2-137 (ENSMUSG00000076501)	Igkv1-135 (ENSMUSG00000096336)	Igkv1-133 (ENSMUSG00000094491)	Igkv1-132 (ENSMUSG00000096580)	Igkv1-131 (ENSMUSG00000076505)	Igkv14-130 (ENSMUSG00000096461)	Igkv9-129 (ENSMUSG00000093906)	Igkv17-127 (ENSMUSG00000076508)	Igkv14-126 (ENSMUSG00000094345)	Igkv11-125 (ENSMUSG00000095737)	Igkv9-124 (ENSMUSG00000096632)	Igkv9-123 (ENSMUSG00000076512)
Mus_C	ANCESTRAL SPECIES	19	ENSGT00910000144252	ENSGT00940000160278	ENSGT01070000253744.a.b	ENSGT00510000046908.a.a.b	ENSGT00390000007586.a.b	ENSGT00940000158340	ENSGT00940000163656	ENSGT00940000153395.a	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.a.b	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.a.a.b.a	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.a.a.a.b	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.a.a.a.a.a	ENSGT01030000234553.b.b.d.c.a.o.a.a.a.a.a.a.b.b.a	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000018245.d
spretus	MODERN SPECIES	15	Smarcad1 (MGP_SPRETEiJ_G0029462)	Hpgds (MGP_SPRETEiJ_G0029463)	Qrfprl (MGP_SPRETEiJ_G0029464)	MGP_SPRETEiJ_G0029465	Ndnf (MGP_SPRETEiJ_G0029466)	Prdm5 (MGP_SPRETEiJ_G0029467)	4930544G11Rik (MGP_SPRETEiJ_G0029468)	Mad2l1 (MGP_SPRETEiJ_G0029469)	MGP_SPRETEiJ_G0029470	MGP_SPRETEiJ_G0029471	MGP_SPRETEiJ_G0029472	MGP_SPRETEiJ_G0029473	Vmn1r38 (MGP_SPRETEiJ_G0029474)	Gng12 (MGP_SPRETEiJ_G0029475)	Gadd45a (MGP_SPRETEiJ_G0029476) #21	Serbp1 (MGP_SPRETEiJ_G0029477) #22	Il12rb2 (MGP_SPRETEiJ_G0029478) #23	Il23r (MGP_SPRETEiJ_G0029479) #25	Tacstd2 (MGP_SPRETEiJ_G0029480)	Igkv14-130 (MGP_SPRETEiJ_G0000074)	MGP_SPRETEiJ_G0000075	Igkv14-126 (MGP_SPRETEiJ_G0000076)	Igkv14-111 (MGP_SPRETEiJ_G0000077)	Igkv11-125 (MGP_SPRETEiJ_G0000078)	Igkv9-123 (MGP_SPRETEiJ_G0000079)	Igkv2-112 (MGP_SPRETEiJ_G0000080)	Igkv16-104 (MGP_SPRETEiJ_G0000081)	Igkv15-103 (MGP_SPRETEiJ_G0000082)	Igkv20-101-2 (MGP_SPRETEiJ_G0000083)	MGP_SPRETEiJ_G0000030	MGP_SPRETEiJ_G0000084
Steppe mouse	MODERN SPECIES	2536													Gng12 (ENSMSIG00000023111)	Gadd45a (ENSMSIG00000023082) #21	ENSMSIG00000023072	Serbp1 (ENSMSIG00000022810) #22	Il12rb2 (ENSMSIG00000022681) #23	ENSMSIG00000022647 #25	Tacstd2 (ENSMSIG00000022639)
Ryukyu mouse	MODERN SPECIES	15	Atoh1 (MGP_CAROLIEiJ_G0028457)	MGP_CAROLIEiJ_G0028458	Hpgds (MGP_CAROLIEiJ_G0028459)	Qrfprl (MGP_CAROLIEiJ_G0028460)	Tnip3 (MGP_CAROLIEiJ_G0028461)	Ndnf (MGP_CAROLIEiJ_G0028462)	Prdm5 (MGP_CAROLIEiJ_G0028463)	4930544G11Rik (MGP_CAROLIEiJ_G0028464)	Mad2l1 (MGP_CAROLIEiJ_G0028465)	Vmn1r32 (MGP_CAROLIEiJ_G0028466)	Vmn1r38 (MGP_CAROLIEiJ_G0028467)	MGP_CAROLIEiJ_G0028468	MGP_CAROLIEiJ_G0028469	Gng12 (MGP_CAROLIEiJ_G0028470)	Gadd45a (MGP_CAROLIEiJ_G0028471) #21	Serbp1 (MGP_CAROLIEiJ_G0028472) #22	Il12rb2 (MGP_CAROLIEiJ_G0028473) #23	Il23r (MGP_CAROLIEiJ_G0028474) #25	Tacstd2 (MGP_CAROLIEiJ_G0028475)	MGP_CAROLIEiJ_G0000066	MGP_CAROLIEiJ_G0000067	Igkv11-125 (MGP_CAROLIEiJ_G0000068)	Igkv12-89 (MGP_CAROLIEiJ_G0000069)	Gm42543 (MGP_CAROLIEiJ_G0000070)	MGP_CAROLIEiJ_G0000071	MGP_CAROLIEiJ_G0000072	Igkv5-48 (MGP_CAROLIEiJ_G0000073)	Igkv5-39 (MGP_CAROLIEiJ_G0000074)	MGP_CAROLIEiJ_G0000075	Igkv18-36 (MGP_CAROLIEiJ_G0000076)	Igkv1-35 (MGP_CAROLIEiJ_G0000077)
Shrew mouse	MODERN SPECIES	11	Snca (MGP_PahariEiJ_G0022193)	Mmrn1 (MGP_PahariEiJ_G0022194)	Ccser1 (MGP_PahariEiJ_G0022195)	Grid2 (MGP_PahariEiJ_G0022196)	Atoh1 (MGP_PahariEiJ_G0022197)	Smarcad1 (MGP_PahariEiJ_G0022198)	Hpgds (MGP_PahariEiJ_G0022199)	Qrfprl (MGP_PahariEiJ_G0022200)	MGP_PahariEiJ_G0022201	Ndnf (MGP_PahariEiJ_G0022202)	Prdm5 (MGP_PahariEiJ_G0022203)	4930544G11Rik (MGP_PahariEiJ_G0022204)	Mad2l1 (MGP_PahariEiJ_G0022205)	Gng12 (MGP_PahariEiJ_G0022206)	Gadd45a (MGP_PahariEiJ_G0022207) #21	Serbp1 (MGP_PahariEiJ_G0022208) #22	Il12rb2 (MGP_PahariEiJ_G0022209) #23	Il23r (MGP_PahariEiJ_G0022210) #25	Tacstd2 (MGP_PahariEiJ_G0022211)	Igkj1 (MGP_PahariEiJ_G0000020)	Igkj2 (MGP_PahariEiJ_G0000021)	MGP_PahariEiJ_G0000022	Igkj4 (MGP_PahariEiJ_G0000023)	MGP_PahariEiJ_G0000024	Igkc (MGP_PahariEiJ_G0000005)	Rpia (MGP_PahariEiJ_G0022212)	MGP_PahariEiJ_G0022213	Tex37 (MGP_PahariEiJ_G0022214)	Foxi3 (MGP_PahariEiJ_G0022215)	Thnsl2 (MGP_PahariEiJ_G0022216)	Fabp1 (MGP_PahariEiJ_G0022217)
Rat	MODERN SPECIES	14	ENSRNOG00000066686	Grid2 (ENSRNOG00000006174)	Atoh1 (ENSRNOG00000006383)	Smarcad1 (ENSRNOG00000006391)	Hpgds (ENSRNOG00000006583)	Qrfprl (ENSRNOG00000006782)	Tnip3 (ENSRNOG00000064111)	Ndnf (ENSRNOG00000006857)	Prdm5 (ENSRNOG00000023679)	RSA-14-44 (ENSRNOG00000042954)	ENSRNOG00000069727	Mad2l1 (ENSRNOG00000005376)	Vom1r89 (ENSRNOG00000070369)	Gng12 (ENSRNOG00000050231)	Gadd45a (ENSRNOG00000005615) #21	Serbp1 (ENSRNOG00000005890) #22	Il12rb2 (ENSRNOG00000007270) #23	Il23r (ENSRNOG00000007544) #25	Tacstd2 (ENSRNOG00000007740)	ENSRNOG00000064041	ENSRNOG00000068649	ENSRNOG00000063859	ENSRNOG00000071049	ENSRNOG00000062475	ENSRNOG00000066643	ENSRNOG00000068441	ENSRNOG00000070169	ENSRNOG00000068221	ENSRNOG00000070192	ENSRNOG00000068648	ENSRNOG00000070412
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	1276	ENSNGAG00000014274	ENSNGAG00000012453	Grid2 (ENSNGAG00000018830)	Atoh1 (ENSNGAG00000017323)	Smarcad1 (ENSNGAG00000000810)	Hpgds (ENSNGAG00000012687)	Qrfprl (ENSNGAG00000010835)	Tnip3 (ENSNGAG00000013422)	Ndnf (ENSNGAG00000012166)	Prdm5 (ENSNGAG00000018317)	ENSNGAG00000020137	Mad2l1 (ENSNGAG00000019258)	ENSNGAG00000011475	Gng12 (ENSNGAG00000004651)	Gadd45a (ENSNGAG00000010577) #21	ENSNGAG00000019203 #22	ENSNGAG00000014083 #23	Il23r (ENSNGAG00000017497) #25
Upper Galilee mountains blind mole rat	MODERN SPECIES	1527																ENSNGAG00000012928 #22	ENSNGAG00000007862	Eeig2 (ENSNGAG00000000645)	ENSNGAG00000019065	Henmt1 (ENSNGAG00000016442)	Prpf38b (ENSNGAG00000011476)	Fndc7 (ENSNGAG00000017706)	Stxbp3 (ENSNGAG00000010143)	ENSNGAG00000000145	ENSNGAG00000011912	ENSNGAG00000010890	Wdr47 (ENSNGAG00000019275)	ENSNGAG00000010727	ENSNGAG00000010620	Cfap276 (ENSNGAG00000009506)	Elapor1 (ENSNGAG00000000218)
Lesser Egyptian jerboa	MODERN SPECIES	98	ENSJJAG00000014086	Dmrta2 (ENSJJAG00000021824)	Faf1 (ENSJJAG00000021352)	Cdkn2c (ENSJJAG00000020524)	Alg10b (ENSJJAG00000019582)	Syt10 (ENSJJAG00000019374)	Pkp2 (ENSJJAG00000014586)	Yars2 (ENSJJAG00000000641)	Dnm1l (ENSJJAG00000023169)	ENSJJAG00000013851	Fgd4 (ENSJJAG00000018423)	Gng12 (ENSJJAG00000017730)	Gadd45a (ENSJJAG00000016764) #21	ENSJJAG00000016243	ENSJJAG00000016153	Serbp1 (ENSJJAG00000023871) #22	Il12rb2 (ENSJJAG00000019502) #23	Tacstd2 (ENSJJAG00000014125)	Mysm1 (ENSJJAG00000016612)	ENSJJAG00000016007	Jun (ENSJJAG00000001078)	ENSJJAG00000022820	Fggy (ENSJJAG00000021024)	Hook1 (ENSJJAG00000017805)	ENSJJAG00000016631	ENSJJAG00000016230	ENSJJAG00000016141	ENSJJAG00000013782	Nfia (ENSJJAG00000012495)	ENSJJAG00000010329	Tm2d1 (ENSJJAG00000008343)
Kangaroo rat	MODERN SPECIES	370	ENSDORG00000027114	ENSDORG00000024342	Negr1 (ENSDORG00000007902)	Zranb2 (ENSDORG00000016348) #8	Ptger3 (ENSDORG00000016347) #9	Cth (ENSDORG00000009184) #10	Ankrd13c (ENSDORG00000000672) #11	Srsf11 (ENSDORG00000000669) #13	Lrrc40 (ENSDORG00000000667) #14	Lrrc7 (ENSDORG00000000664) #15	Rpe65 (ENSDORG00000004476) #18	Wls (ENSDORG00000007449) #19	Gng12 (ENSDORG00000027722)	Gadd45a (ENSDORG00000011668) #21	ENSDORG00000023240	Serbp1 (ENSDORG00000002189) #22	Slc35d1 (ENSDORG00000002120) #27	Mier1 (ENSDORG00000002114) #29	Sgip1 (ENSDORG00000001885) #33	Pde4b (ENSDORG00000010712) #34	Leprot (ENSDORG00000005691) #36	Dnajc6 (ENSDORG00000005685) #37	Ak4 (ENSDORG00000023966)	Jak1 (ENSDORG00000013462)	Raver2 (ENSDORG00000002498)	Cachd1 (ENSDORG00000011104)	Ror1 (ENSDORG00000014715)	Pgm1 (ENSDORG00000006501)	Efcab7 (ENSDORG00000013731)	Alg6 (ENSDORG00000013729)	Atg4c (ENSDORG00000027209)
Rodentia_A	ANCESTRAL SPECIES		ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT01010000228719	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092
Hystricomorpha	ANCESTRAL SPECIES	44	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092
Hystricomorpha_a	ANCESTRAL SPECIES	14	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092
Hystricomorpha_b	DUPLICATION
Hystricomorpha_b	ANCESTRAL SPECIES																	ENSGT00520000055591.a.bb #22
Degu	DUPLICATION
Degu	DUPLICATION
Degu	MODERN SPECIES	98	NEGR1 (ENSODEG00000005896)	ENSODEG00000006491 #8	PTGER3 (ENSODEG00000005473) #9	CTH (ENSODEG00000006417) #10	ANKRD13C (ENSODEG00000005392) #11	SRSF11 (ENSODEG00000006289) #13	LRRC40 (ENSODEG00000005601) #14	LRRC7 (ENSODEG00000006670) #15	ENSODEG00000005510	DEPDC1 (ENSODEG00000005384) #17	RPE65 (ENSODEG00000005046) #18	WLS (ENSODEG00000006216) #19	GNG12 (ENSODEG00000005519)	GADD45A (ENSODEG00000007377) #21	ENSODEG00000005146	ENSODEG00000006835 #22	ENSODEG00000006396	SLC35D1 (ENSODEG00000005492) #27	ENSODEG00000004802 #29	DNAI4 (ENSODEG00000005891) #30	ENSODEG00000005348	DYNLT5 (ENSODEG00000006520) #32	SGIP1 (ENSODEG00000005002) #33	ENSODEG00000005863	PDE4B (ENSODEG00000004887) #34	LEPR (ENSODEG00000005568) #35	ENSODEG00000019195	LEPROT (ENSODEG00000006321) #36	ENSODEG00000006173 #37	ENSODEG00000006986	ENSODEG00000006541
Degu	MODERN SPECIES	160	RIPOR2 (ENSODEG00000013706)	GMNN (ENSODEG00000015221)	C6orf62 (ENSODEG00000014107)	ENSODEG00000015001	TDP2 (ENSODEG00000014018)	ENSODEG00000013792	ALDH5A1 (ENSODEG00000014169)	ENSODEG00000014139	ENSODEG00000014365	MRS2 (ENSODEG00000013755)	DCDC2 (ENSODEG00000014362)	ENSODEG00000020139	NRSN1 (ENSODEG00000014353)	ENSODEG00000014552	PRL (ENSODEG00000014667)	ENSODEG00000015433 #22	ENSODEG00000014569	SOX4 (ENSODEG00000014118)	ENSODEG00000016012	ENSODEG00000014548	ENSODEG00000015137	E2F3 (ENSODEG00000014766)	MBOAT1 (ENSODEG00000013888)	ID4 (ENSODEG00000013997)
Degu	MODERN SPECIES	122	ENSODEG00000005535	ADGRG7 (ENSODEG00000005676)	TMEM45A (ENSODEG00000005098)	ENSODEG00000006299	ENSODEG00000019267	ENSODEG00000005682	LNP1 (ENSODEG00000005232)	ENSODEG00000007594	TOMM70 (ENSODEG00000005476)	ENSODEG00000005041	TBC1D23 (ENSODEG00000005180)	ENSODEG00000006664	FILIP1L (ENSODEG00000006295)	ENSODEG00000005226	COL8A1 (ENSODEG00000004998)	ENSODEG00000006867 #22	DCBLD2 (ENSODEG00000005751)	ENSODEG00000005393	ENSODEG00000019181	ENSODEG00000019164	ENSODEG00000005746	CPOX (ENSODEG00000004750)	GPR15 (ENSODEG00000019236)	ENSODEG00000005283	ENSODEG00000005152	ENSODEG00000019229	NPSR1 (ENSODEG00000005018)	ENSODEG00000005414	ENSODEG00000004808	ENSODEG00000005165	ENSODEG00000004827
Hystricomorpha_b	ANCESTRAL SPECIES	6	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a.cb #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT01030000235815	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092
Long-tailed chinchilla	MODERN SPECIES	130	FPGT (ENSCLAG00000005973)	LRRIQ3 (ENSCLAG00000006032)	NEGR1 (ENSCLAG00000007364)	ZRANB2 (ENSCLAG00000004404) #8	PTGER3 (ENSCLAG00000005105) #9	CTH (ENSCLAG00000005393) #10	ANKRD13C (ENSCLAG00000011373) #11	SRSF11 (ENSCLAG00000013309) #13	LRRC40 (ENSCLAG00000014047) #14	LRRC7 (ENSCLAG00000008949) #15	DEPDC1 (ENSCLAG00000006344) #17	RPE65 (ENSCLAG00000006679) #18	WLS (ENSCLAG00000006873) #19	GNG12 (ENSCLAG00000007040)	GADD45A (ENSCLAG00000007279) #21	SERBP1 (ENSCLAG00000007459) #22	ENSCLAG00000008496 #23	IL23R (ENSCLAG00000008594) #25	ENSCLAG00000005867 #26	SLC35D1 (ENSCLAG00000006519) #27	MIER1 (ENSCLAG00000006851) #29	ENSCLAG00000007749 #30	ENSCLAG00000004621	ENSCLAG00000004647	SGIP1 (ENSCLAG00000005269) #33	PDE4B (ENSCLAG00000006409) #34	LEPR (ENSCLAG00000016236) #35	LEPROT (ENSCLAG00000008136) #36	DNAJC6 (ENSCLAG00000008413) #37	ENSCLAG00000005491	JAK1 (ENSCLAG00000006227)
Degu	MODERN SPECIES	179																ENSODEG00000003498 #22	ENSODEG00000003509	LCN2 (ENSODEG00000003527)	PTGES2 (ENSODEG00000003544)	SLC25A25 (ENSODEG00000003576)	ENSODEG00000018972	NAIF1 (ENSODEG00000003624)	EEIG1 (ENSODEG00000003648)	DPM2 (ENSODEG00000003688)	PIP5KL1 (ENSODEG00000003703)	ST6GALNAC4 (ENSODEG00000003727)	ENSODEG00000003757	AK1 (ENSODEG00000003768)	ENG (ENSODEG00000003811)	FPGS (ENSODEG00000003915)	CDK9 (ENSODEG00000003962)
Guinea pig	MODERN SPECIES	2	ENSCPOG00000012014	NEGR1 (ENSCPOG00000004501)	ZRANB2 (ENSCPOG00000007829) #8	PTGER3 (ENSCPOG00000002783) #9	CTH (ENSCPOG00000020205) #10	ANKRD13C (ENSCPOG00000009559) #11	SRSF11 (ENSCPOG00000009554) #13	LRRC40 (ENSCPOG00000009536) #14	LRRC7 (ENSCPOG00000009529) #15	ENSCPOG00000024331	DEPDC1 (ENSCPOG00000013839) #17	RPE65 (ENSCPOG00000013831) #18	WLS (ENSCPOG00000012423) #19	GNG12 (ENSCPOG00000036301)	GADD45A (ENSCPOG00000005810) #21	SERBP1 (ENSCPOG00000020069) #22	ENSCPOG00000027017 #26	SLC35D1 (ENSCPOG00000030853) #27	MIER1 (ENSCPOG00000014165) #29	ENSCPOG00000014157 #30	INSL5 (ENSCPOG00000011735) #31	DYNLT5 (ENSCPOG00000014156) #32	SGIP1 (ENSCPOG00000012044) #33	PDE4B (ENSCPOG00000011698) #34	LEPR (ENSCPOG00000015030) #35	LEPROT (ENSCPOG00000033712) #36	DNAJC6 (ENSCPOG00000008733) #37	ENSCPOG00000037978	JAK1 (ENSCPOG00000005991)	RAVER2 (ENSCPOG00000005986)	CACHD1 (ENSCPOG00000011700)
Sciuridae	ANCESTRAL SPECIES	3	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT01010000228719	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092
Marmotini	ANCESTRAL SPECIES		ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078.w.a #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092
Marmotini_b	ANCESTRAL SPECIES	105	ENSGT00940000159289	ENSGT00730000111078.w.a #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00940000154222.d.b.d.b.n	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00730000111209 #35
Squirrel	MODERN SPECIES	191	ENSSTOG00000000890 #8	PTGER3 (ENSSTOG00000000886) #9	CTH (ENSSTOG00000000202) #10	ENSSTOG00000034931	ENSSTOG00000032029	ANKRD13C (ENSSTOG00000008687) #11	SRSF11 (ENSSTOG00000008675) #13	LRRC40 (ENSSTOG00000008649) #14	LRRC7 (ENSSTOG00000008618) #15	ENSSTOG00000032513	DEPDC1 (ENSSTOG00000001673) #17	RPE65 (ENSSTOG00000001659) #18	WLS (ENSSTOG00000008145) #19	GNG12 (ENSSTOG00000004502)	GADD45A (ENSSTOG00000024503) #21	SERBP1 (ENSSTOG00000026587) #22	ENSSTOG00000016126 #23	IL23R (ENSSTOG00000005238) #25	SLC35D1 (ENSSTOG00000010086) #27	MIER1 (ENSSTOG00000011394) #29	ENSSTOG00000011383 #30	ENSSTOG00000031556	INSL5 (ENSSTOG00000016330) #31	ENSSTOG00000016329	SGIP1 (ENSSTOG00000016322) #33	PDE4B (ENSSTOG00000028938) #34	LEPR (ENSSTOG00000022005) #35
Arctic ground squirrel	MODERN SPECIES	14	ZRANB2 (ENSUPAG00010014577) #8	ENSUPAG00010014568 #9	ENSUPAG00010014565	CTH (ENSUPAG00010014528) #10	ENSUPAG00010014512	ANKRD13C (ENSUPAG00010014475) #11	SRSF11 (ENSUPAG00010014456) #13	LRRC40 (ENSUPAG00010014436) #14	LRRC7 (ENSUPAG00010014242) #15	DEPDC1 (ENSUPAG00010014188) #17	RPE65 (ENSUPAG00010014157) #18	WLS (ENSUPAG00010014142) #19	ENSUPAG00010014133 #20	GNG12 (ENSUPAG00010014121)	GADD45A (ENSUPAG00010014109) #21	SERBP1 (ENSUPAG00010013929) #22	IL12RB2 (ENSUPAG00010013900) #23	IL23R (ENSUPAG00010013875) #25	ENSUPAG00010013858 #26	SLC35D1 (ENSUPAG00010013821) #27	MIER1 (ENSUPAG00010013780) #29	ENSUPAG00010013759 #30	ENSUPAG00010013745 #30	INSL5 (ENSUPAG00010013736) #31	DYNLT5 (ENSUPAG00010013722) #32	SGIP1 (ENSUPAG00010013307) #33	PDE4B (ENSUPAG00010013188) #34
Alpin marmot	MODERN SPECIES	27	PTGER3 (ENSMMMG00000000262) #9	ENSMMMG00000000250	ENSMMMG00000000236	ENSMMMG00000000219	CTH (ENSMMMG00000000175) #10	ANKRD13C (ENSMMMG00000000111) #11	SRSF11 (ENSMMMG00000018369) #13	LRRC40 (ENSMMMG00000018339) #14	LRRC7 (ENSMMMG00000018169) #15	DEPDC1 (ENSMMMG00000018082) #17	RPE65 (ENSMMMG00000018066) #18	WLS (ENSMMMG00000018053) #19	DIRAS3 (ENSMMMG00000018034) #20	GNG12 (ENSMMMG00000018008)	GADD45A (ENSMMMG00000017997) #21	SERBP1 (ENSMMMG00000017849) #22	ENSMMMG00000017835	PTGER4 (ENSMMMG00000017826)	TTC33 (ENSMMMG00000017819)	PRKAA1 (ENSMMMG00000017787)	RPL37 (ENSMMMG00000017779)	CARD6 (ENSMMMG00000017776)	C7 (ENSMMMG00000017398)	ENSMMMG00000017396	MROH2B (ENSMMMG00000017369)	C6 (ENSMMMG00000017358)	PLCXD3 (ENSMMMG00000017352)	ENSMMMG00000017300	RIMOC1 (ENSMMMG00000017296)	FBXO4 (ENSMMMG00000017291)	GHR (ENSMMMG00000017240)
Eurasian red squirrel	MODERN SPECIES		ENSSVLG00005017607	ENSSVLG00005017591	CTH (ENSSVLG00005017161) #10	ENSSVLG00005017080	ANKRD13C (ENSSVLG00005016963) #11	SRSF11 (ENSSVLG00005016775) #13	ENSSVLG00005016746	ENSSVLG00005016639 #14	LRRC7 (ENSSVLG00005016053) #15	DEPDC1 (ENSSVLG00005015797) #17	RPE65 (ENSSVLG00005015624) #18	WLS (ENSSVLG00005015479) #19	DIRAS3 (ENSSVLG00005015456) #20	GNG12 (ENSSVLG00005015424)	GADD45A (ENSSVLG00005015298) #21	SERBP1 (ENSSVLG00005015184) #22	IL12RB2 (ENSSVLG00005014564) #23	IL23R (ENSSVLG00005014294) #25	ENSSVLG00005014261	C1orf141 (ENSSVLG00005014047) #26	ENSSVLG00005013884	ENSSVLG00005013815 #27	ENSSVLG00005013677 #29	DNAI4 (ENSSVLG00005013339) #30	INSL5 (ENSSVLG00005013170) #31	DYNLT5 (ENSSVLG00005013092) #32	SGIP1 (ENSSVLG00005012998) #33	PDE4B (ENSSVLG00005012364) #34	LEPR (ENSSVLG00005011511) #35	ENSSVLG00005011368	ENSSVLG00005011213 #36
Laurasiatheria	ANCESTRAL SPECIES		ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT01010000228719	ENSGT00940000156968 #14	ENSGT00940000165286	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT01010000228719	ENSGT00940000156968 #14	ENSGT00940000165286	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568
Artiodactyla	ANCESTRAL SPECIES		ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568
Suina	ANCESTRAL SPECIES	27	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092
Pig	MODERN SPECIES	14	ENSSSCG00000049727	ZRANB2 (ENSSSCG00000003787) #8	PTGER3 (ENSSSCG00000003788) #9	CTH (ENSSSCG00000003789) #10	ANKRD13C (ENSSSCG00000003790) #11	SRSF11 (ENSSSCG00000003791) #13	ENSSSCG00000003792 #14	LRRC7 (ENSSSCG00000003793) #15	ENSSSCG00000042518	DEPDC1 (ENSSSCG00000033443) #17	RPE65 (ENSSSCG00000003794) #18	WLS (ENSSSCG00000003795) #19	DIRAS3 (ENSSSCG00000003797) #20	GNG12 (ENSSSCG00000036505)	GADD45A (ENSSSCG00000037066) #21	SERBP1 (ENSSSCG00000003798) #22	IL12RB2 (ENSSSCG00000003799) #23	IL23R (ENSSSCG00000003801) #25	C1orf141 (ENSSSCG00000003803) #26	SLC35D1 (ENSSSCG00000032043) #27	MIER1 (ENSSSCG00000030423) #29	DNAI4 (ENSSSCG00000022305) #30	ENSSSCG00000039433	DYNLT5 (ENSSSCG00000031352) #32	SGIP1 (ENSSSCG00000025243) #33	PDE4B (ENSSSCG00000003805) #34	ENSSSCG00000040903	LEPR (ENSSSCG00000025188) #35	LEPROT (ENSSSCG00000003806) #36	DNAJC6 (ENSSSCG00000003807) #37	ENSSSCG00000040337
Chacoan peccary	MODERN SPECIES	54	ZRANB2 (ENSCWAG00000006781) #8	PTGER3 (ENSCWAG00000006818) #9	ENSCWAG00000006917	CTH (ENSCWAG00000006977) #10	ENSCWAG00000007276	ANKRD13C (ENSCWAG00000007305) #11	SRSF11 (ENSCWAG00000007484) #13	LRRC40 (ENSCWAG00000007563) #14	LRRC7 (ENSCWAG00000007628) #15	DEPDC1 (ENSCWAG00000008223) #17	RPE65 (ENSCWAG00000005759) #18	WLS (ENSCWAG00000005902) #19	DIRAS3 (ENSCWAG00000006110) #20	GNG12 (ENSCWAG00000006121)	GADD45A (ENSCWAG00000006162) #21	SERBP1 (ENSCWAG00000006245) #22	IL12RB2 (ENSCWAG00000006311) #23	IL23R (ENSCWAG00000006836) #25	ENSCWAG00000006960 #26	SLC35D1 (ENSCWAG00000006999) #27	MIER1 (ENSCWAG00000007093) #29	ENSCWAG00000007755	ENSCWAG00000007769 #30	INSL5 (ENSCWAG00000007785) #31	DYNLT5 (ENSCWAG00000007809) #32	SGIP1 (ENSCWAG00000007878) #33	PDE4B (ENSCWAG00000008615) #34	LEPR (ENSCWAG00000009654) #35	LEPROT (ENSCWAG00000009749) #36	DNAJC6 (ENSCWAG00000009899) #37	ENSCWAG00000010175
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568
Camelidae	ANCESTRAL SPECIES	11	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00990000205383	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092
Arabian camel	MODERN SPECIES	4	ENSCDRG00005009889	NEGR1 (ENSCDRG00005009715)	ZRANB2 (ENSCDRG00005009506) #8	PTGER3 (ENSCDRG00005009342) #9	CTH (ENSCDRG00005009028) #10	ANKRD13C (ENSCDRG00005008826) #11	SRSF11 (ENSCDRG00005008759) #13	LRRC40 (ENSCDRG00005008600) #14	LRRC7 (ENSCDRG00005008143) #15	DEPDC1 (ENSCDRG00005008010) #17	RPE65 (ENSCDRG00005007822) #18	WLS (ENSCDRG00005007433) #19	DIRAS3 (ENSCDRG00005007399) #20	GNG12 (ENSCDRG00005007385)	GADD45A (ENSCDRG00005007265) #21	SERBP1 (ENSCDRG00005007209) #22	IL12RB2 (ENSCDRG00005006997) #23	IL23R (ENSCDRG00005006826) #25	ENSCDRG00005006792	SLC35D1 (ENSCDRG00005006715) #27	MIER1 (ENSCDRG00005006406) #29	DNAI4 (ENSCDRG00005006212) #30	INSL5 (ENSCDRG00005006189) #31	DYNLT5 (ENSCDRG00005006169) #32	SGIP1 (ENSCDRG00005005920) #33	PDE4B (ENSCDRG00005005526) #34	ENSCDRG00005005483	LEPR (ENSCDRG00005005388) #35	LEPROT (ENSCDRG00005005302) #36	DNAJC6 (ENSCDRG00005004711) #37	ENSCDRG00005004652
Alpaca	MODERN SPECIES	50																SERBP1 (ENSVPAG00000000923) #22	IL12RB2 (ENSVPAG00000000922) #23	IL23R (ENSVPAG00000000921) #25	ENSVPAG00000000920	SLC35D1 (ENSVPAG00000000919) #27	MIER1 (ENSVPAG00000000918) #29	DNAI4 (ENSVPAG00000000917) #30	INSL5 (ENSVPAG00000000916) #31	DYNLT5 (ENSVPAG00000000915) #32	SGIP1 (ENSVPAG00000000914) #33
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568
Pecora	ANCESTRAL SPECIES	2	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a.j #36	ENSGT00940000158755 #37	ENSGT00940000154568
Percora_a	ANCESTRAL SPECIES	1	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a.j #36	ENSGT00940000158755 #37	ENSGT00940000154568
Bovidae	ANCESTRAL SPECIES	1	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a.j #36	ENSGT00940000158755 #37	ENSGT00940000154568
Bovinae	ANCESTRAL SPECIES	1	ENSGT00940000159289	ENSGT01100000264350	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b.e	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198.c #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a.j #36	ENSGT00940000158755 #37	ENSGT00940000154568
Bos	ANCESTRAL SPECIES		ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312.u #10	ENSGT00950000182928.B.d.b #11	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.a.b.b.a.a.a.b.b.a.a.b	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00940000161805.p.a.b	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b.e	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198.c #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a.j #36	ENSGT00940000158755 #37	ENSGT00940000154568.u
Bos_a	ANCESTRAL SPECIES	1	ENSGT00950000182928.B.d.b #11	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.a.b.b.a.a.a.b.b.a.a.b	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00940000161805.p.a.b	ENSGT00940000165941	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT01100000263497.E.b.e	ENSGT00940000164094 #20	ENSGT00390000001618.cb.b	ENSGT00390000000378.d.b.fb.b.c.h	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198.c #25	ENSGT00530000064198.d #25	ENSGT00390000014549.g	ENSGT00990000205383	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00390000017491.t.t.a.b	ENSGT00940000155190 #34	ENSGT00730000111209 #35	ENSGT00390000006503.a.j #36
Domestic yak	MODERN SPECIES	22	ANKRD13C (ENSBGRG00000005513) #11	ENSBGRG00000007232	SRSF11 (ENSBGRG00000007267) #13	LRRC40 (ENSBGRG00000007429) #14	LRRC7 (ENSBGRG00000007643) #15	ENSBGRG00000008029	DEPDC1 (ENSBGRG00000008047) #17	ENSBGRG00000008289	RPE65 (ENSBGRG00000008339) #18	WLS (ENSBGRG00000008504) #19	DIRAS3 (ENSBGRG00000008874) #20	ENSBGRG00000008894	ENSBGRG00000008913	ENSBGRG00000008938	GADD45A (ENSBGRG00000008972) #21	SERBP1 (ENSBGRG00000009099) #22	IL12RB2 (ENSBGRG00000009248) #23	ENSBGRG00000009394	ENSBGRG00000009413 #25	ENSBGRG00000009440 #25	ENSBGRG00000009539	ENSBGRG00000009599	SLC35D1 (ENSBGRG00000009631) #27	MIER1 (ENSBGRG00000009812) #29	ENSBGRG00000010112	DNAI4 (ENSBGRG00000010128) #30	INSL5 (ENSBGRG00000010455) #31	DYNLT5 (ENSBGRG00000010507) #32	SGIP1 (ENSBGRG00000010617) #33	ENSBGRG00000011976	ENSBGRG00000012022
Wild yak	MODERN SPECIES	754											WLS (ENSBMUG00000010330) #19	GNG12 (ENSBMUG00000010353)	ENSBMUG00000010359	ENSBMUG00000010367	GADD45A (ENSBMUG00000010401) #21	SERBP1 (ENSBMUG00000010422) #22	IL12RB2 (ENSBMUG00000010519) #23	ENSBMUG00000010553 #25	ENSBMUG00000010567 #25	ENSBMUG00000010583	ENSBMUG00000010602	ENSBMUG00000010632	SLC35D1 (ENSBMUG00000010661) #27	MIER1 (ENSBMUG00000010808) #29	ENSBMUG00000010837 #30	ENSBMUG00000010843	ENSBMUG00000010869 #30	INSL5 (ENSBMUG00000010885) #31	DYNLT5 (ENSBMUG00000010909) #32	SGIP1 (ENSBMUG00000011032) #33	ENSBMUG00000011048
Bos_b	ANCESTRAL SPECIES	1	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312.u #10	ENSGT00950000182928.B.d.b #11	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.a.b.b.a.a.a.b.b.a.a.b	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00940000161805.p.a.b	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b.e	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198.c #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00400000022103.a.jb.a	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a.i.a #36	ENSGT00940000158755 #37
Hybrid Bos Indicus	MODERN SPECIES	22	ENSBIXG00005024494 #9	CTH (ENSBIXG00005024430) #10	ENSBIXG00005006847	ANKRD13C (ENSBIXG00005004155) #11	ENSBIXG00005006287	SRSF11 (ENSBIXG00005007179) #13	LRRC40 (ENSBIXG00005024169) #14	LRRC7 (ENSBIXG00005024014) #15	ENSBIXG00005006675	DEPDC1 (ENSBIXG00005023771) #17	ENSBIXG00005023720	RPE65 (ENSBIXG00005023709) #18	WLS (ENSBIXG00005023640) #19	DIRAS3 (ENSBIXG00005023520) #20	GADD45A (ENSBIXG00005023475) #21	SERBP1 (ENSBIXG00005023375) #22	IL12RB2 (ENSBIXG00005023295) #23	ENSBIXG00005023212 #26	IL23R (ENSBIXG00005023197) #25	SLC35D1 (ENSBIXG00005023139) #27	MIER1 (ENSBIXG00005003930) #29	DNAI4 (ENSBIXG00005022849) #30	ENSBIXG00005022763	INSL5 (ENSBIXG00005022735) #31	DYNLT5 (ENSBIXG00005003891) #32	SGIP1 (ENSBIXG00005022689) #33	ENSBIXG00005022613	PDE4B (ENSBIXG00005022555) #34	LEPR (ENSBIXG00005006516) #35	ENSBIXG00005005878 #36	DNAJC6 (ENSBIXG00005022150) #37
Cow	MODERN SPECIES	22	ENSBTAG00000005099	ZRANB2 (ENSBTAG00000002627) #8	PTGER3 (ENSBTAG00000019230) #9	CTH (ENSBTAG00000014791) #10	ANKRD13C (ENSBTAG00000015482) #11	SRSF11 (ENSBTAG00000015474) #13	LRRC40 (ENSBTAG00000008243) #14	LRRC7 (ENSBTAG00000009338) #15	DEPDC1 (ENSBTAG00000001343) #17	ENSBTAG00000030890	RPE65 (ENSBTAG00000020494) #18	WLS (ENSBTAG00000012976) #19	DIRAS3 (ENSBTAG00000012182) #20	GNG12 (ENSBTAG00000054533)	GADD45A (ENSBTAG00000013860) #21	SERBP1 (ENSBTAG00000012957) #22	IL12RB2 (ENSBTAG00000009455) #23	IL23R (ENSBTAG00000014983) #25	C3H1orf141 (ENSBTAG00000030809) #26	SLC35D1 (ENSBTAG00000005445) #27	MIER1 (ENSBTAG00000005443) #29	DNAI4 (ENSBTAG00000005442) #30	ENSBTAG00000049696	INSL5 (ENSBTAG00000003850) #31	DYNLT5 (ENSBTAG00000011097) #32	SGIP1 (ENSBTAG00000011091) #33	PDE4B (ENSBTAG00000008636) #34	MGC137454 (ENSBTAG00000030852)	LEPR (ENSBTAG00000005910) #35	LEPROT (ENSBTAG00000005909) #36	DNAJC6 (ENSBTAG00000030749) #37
American bison	MODERN SPECIES	3205														ENSBBBG00000001748	GADD45A (ENSBBBG00000008738) #21	SERBP1 (ENSBBBG00000012876) #22	IL12RB2 (ENSBBBG00000012971) #23	ENSBBBG00000002584 #25	ENSBBBG00000013005 #25	ENSBBBG00000013013	SLC35D1 (ENSBBBG00000013026) #27	MIER1 (ENSBBBG00000002617) #29	ENSBBBG00000013078	DNAI4 (ENSBBBG00000013096) #30	INSL5 (ENSBBBG00000002632) #31	DYNLT5 (ENSBBBG00000001674) #32	ENSBBBG00000013111	SGIP1 (ENSBBBG00000002670) #33	PDE4B (ENSBBBG00000002710) #34	LEPR (ENSBBBG00000013462) #35	LEPROT (ENSBBBG00000013493) #36
Caprinae	ANCESTRAL SPECIES	2	ENSGT00940000159289	ENSGT00730000111078.`b #8	ENSGT01030000234559.b #9	ENSGT00940000167970.b	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a.j #36	ENSGT00940000158755 #37	ENSGT00940000154568
Goat	MODERN SPECIES	22	ENSCHIG00000009410 #8	PTGER3 (ENSCHIG00000020559) #9	ENSCHIG00000026245	CTH (ENSCHIG00000019727) #10	ANKRD13C (ENSCHIG00000021359) #11	SRSF11 (ENSCHIG00000025295) #13	LRRC40 (ENSCHIG00000017526) #14	LRRC7 (ENSCHIG00000026785) #15	DEPDC1 (ENSCHIG00000010008) #17	RPE65 (ENSCHIG00000023075) #18	ENSCHIG00000008135	WLS (ENSCHIG00000015817) #19	GNG12 (ENSCHIG00000015506)	GADD45A (ENSCHIG00000025537) #21	ENSCHIG00000011544	SERBP1 (ENSCHIG00000026670) #22	IL12RB2 (ENSCHIG00000026777) #23	IL23R (ENSCHIG00000023744) #25	C1orf141 (ENSCHIG00000027076) #26	SLC35D1 (ENSCHIG00000026528) #27	MIER1 (ENSCHIG00000017898) #29	DNAI4 (ENSCHIG00000003835) #30	INSL5 (ENSCHIG00000016279) #31	DYNLT5 (ENSCHIG00000025637) #32	SGIP1 (ENSCHIG00000011387) #33	ENSCHIG00000026828	PDE4B (ENSCHIG00000007288) #34	ENSCHIG00000026640	LEPR (ENSCHIG00000023226) #35	LEPROT (ENSCHIG00000010872) #36	DNAJC6 (ENSCHIG00000027196) #37
Rambouillet Sheep	MODERN SPECIES		ENSOARG00020013817 #8	PTGER3 (ENSOARG00020013470) #9	ENSOARG00020013423	ENSOARG00020013381	CTH (ENSOARG00020013082) #10	ANKRD13C (ENSOARG00020012714) #11	SRSF11 (ENSOARG00020012616) #13	LRRC40 (ENSOARG00020012472) #14	LRRC7 (ENSOARG00020011350) #15	DEPDC1 (ENSOARG00020010867) #17	RPE65 (ENSOARG00020010689) #18	WLS (ENSOARG00020010326) #19	DIRAS3 (ENSOARG00020010267) #20	GNG12 (ENSOARG00020010213)	GADD45A (ENSOARG00020009930) #21	SERBP1 (ENSOARG00020009805) #22	IL12RB2 (ENSOARG00020009558) #23	IL23R (ENSOARG00020009278) #25	C1orf141 (ENSOARG00020009212) #26	SLC35D1 (ENSOARG00020009073) #27	MIER1 (ENSOARG00020008644) #29	DNAI4 (ENSOARG00020008367) #30	INSL5 (ENSOARG00020008319) #31	DYNLT5 (ENSOARG00020008255) #32	ENSOARG00020008215	SGIP1 (ENSOARG00020007630) #33	PDE4B (ENSOARG00020007182) #34	LEPR (ENSOARG00020006509) #35	LEPROT (ENSOARG00020026025) #36	DNAJC6 (ENSOARG00020025984) #37	ENSOARG00020025972
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	127															CEBPD (ENSMMSG00000002300)	ENSMMSG00000002289 #22	SPIDR (ENSMMSG00000002218)	ENSMMSG00000002200	PRKDC (ENSMMSG00000002095)	MCM4 (ENSMMSG00000001854)	UBE2V2 (ENSMMSG00000001792)	CLXN (ENSMMSG00000001763)	SNAI2 (ENSMMSG00000001745)
Siberian musk deer	MODERN SPECIES	339	ZRANB2 (ENSMMSG00000013063) #8	PTGER3 (ENSMMSG00000013125) #9	CTH (ENSMMSG00000013275) #10	ENSMMSG00000013321	ANKRD13C (ENSMMSG00000004375) #11	SRSF11 (ENSMMSG00000004414) #13	LRRC40 (ENSMMSG00000004447) #14	LRRC7 (ENSMMSG00000004578) #15	DEPDC1 (ENSMMSG00000005154) #17	RPE65 (ENSMMSG00000005215) #18	ENSMMSG00000005268	WLS (ENSMMSG00000005308) #19	DIRAS3 (ENSMMSG00000005467) #20	GNG12 (ENSMMSG00000005481)	GADD45A (ENSMMSG00000005535) #21	ENSMMSG00000005637 #22	IL12RB2 (ENSMMSG00000005957) #23	IL23R (ENSMMSG00000006578) #25	ENSMMSG00000006661	SLC35D1 (ENSMMSG00000006681) #27	MIER1 (ENSMMSG00000006725) #29	DNAI4 (ENSMMSG00000006873) #30	INSL5 (ENSMMSG00000007080) #31	DYNLT5 (ENSMMSG00000007108) #32	SGIP1 (ENSMMSG00000007149) #33	ENSMMSG00000007256	PDE4B (ENSMMSG00000007306) #34	LEPR (ENSMMSG00000007649) #35	LEPROT (ENSMMSG00000007926) #36	ENSMMSG00000007989 #37	ENSMMSG00000008200
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	12	ENSCHYG00000023662 #22	ENSCHYG00000023866 #23	ENSCHYG00000023995 #25	ENSCHYG00000024006 #25	ENSCHYG00000024039	ENSCHYG00000024060 #27	ENSCHYG00000024134 #29	ENSCHYG00000024521 #30	ENSCHYG00000024658 #31	ENSCHYG00000024671 #32	ENSCHYG00000024702 #33	ENSCHYG00000024798 #34	ENSCHYG00000025006	ENSCHYG00000025023	GADD45A (ENSCHYG00000025045) #21	ENSCHYG00000025061 #22	ENSCHYG00000025088 #23	ENSCHYG00000025152 #25	C1orf141 (ENSCHYG00000025159) #26	ENSCHYG00000025173 #27	ENSCHYG00000025223 #29	ENSCHYG00000025382 #30	ENSCHYG00000025570 #31	ENSCHYG00000025582 #32	ENSCHYG00000025647 #33	ENSCHYG00000025882 #34	ENSCHYG00000025911	ENSCHYG00000025927	ENSCHYG00000025967 #35	ENSCHYG00000026022 #36	ENSCHYG00000026111 #37
Yarkand deer	MODERN SPECIES	12	PTGER3 (ENSCHYG00000021260) #9	ENSCHYG00000021352	CTH (ENSCHYG00000021378) #10	ANKRD13C (ENSCHYG00000021606) #11	ENSCHYG00000021795	SRSF11 (ENSCHYG00000021820) #13	LRRC40 (ENSCHYG00000021953) #14	LRRC7 (ENSCHYG00000022051) #15	DEPDC1 (ENSCHYG00000022371) #17	RPE65 (ENSCHYG00000022637) #18	ENSCHYG00000022731	WLS (ENSCHYG00000022810) #19	DIRAS3 (ENSCHYG00000023484) #20	ENSCHYG00000023503	ENSCHYG00000023560 #21	ENSCHYG00000023662 #22	ENSCHYG00000023866 #23	ENSCHYG00000023995 #25	ENSCHYG00000024006 #25	ENSCHYG00000024039	ENSCHYG00000024060 #27	ENSCHYG00000024134 #29	ENSCHYG00000024521 #30	ENSCHYG00000024658 #31	ENSCHYG00000024671 #32	ENSCHYG00000024702 #33	ENSCHYG00000024798 #34	ENSCHYG00000025006	ENSCHYG00000025023	GADD45A (ENSCHYG00000025045) #21	ENSCHYG00000025061 #22
Cetacea	ANCESTRAL SPECIES		ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000154169.A.l
Odontoceti	ANCESTRAL SPECIES		ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT01030000235815	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00730000111209 #35	ENSGT00390000006503.a.k #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000154169.A.l
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES	15	ENSPCTG00005020300	NEGR1 (ENSPCTG00005020328)	ZRANB2 (ENSPCTG00005020419) #8	PTGER3 (ENSPCTG00005020486) #9	CTH (ENSPCTG00005020597) #10	ANKRD13C (ENSPCTG00005020681) #11	SRSF11 (ENSPCTG00005009159) #13	LRRC40 (ENSPCTG00005009424) #14	LRRC7 (ENSPCTG00005010553) #15	DEPDC1 (ENSPCTG00005012486) #17	RPE65 (ENSPCTG00005013056) #18	WLS (ENSPCTG00005013653) #19	DIRAS3 (ENSPCTG00005014188) #20	GNG12 (ENSPCTG00005014267)	GADD45A (ENSPCTG00005014488) #21	SERBP1 (ENSPCTG00005014874) #22	IL12RB2 (ENSPCTG00005015758) #23	IL23R (ENSPCTG00005017307) #25	ENSPCTG00005017739	SLC35D1 (ENSPCTG00005017949) #27	MIER1 (ENSPCTG00005018555) #29	DNAI4 (ENSPCTG00005019453) #30	ENSPCTG00005019975	INSL5 (ENSPCTG00005020021) #31	TCTEX1D1 (ENSPCTG00005020131) #32	SGIP1 (ENSPCTG00005020468) #33	ENSPCTG00005020806	PDE4B (ENSPCTG00005021109) #34	LEPR (ENSPCTG00005022108) #35	LEPROT (ENSPCTG00005022488) #36	DNAJC6 (ENSPCTG00005022551) #37
Sperm whale	MODERN SPECIES	4	ENSPCTG00005009672	ENSPCTG00005009634	LMO7 (ENSPCTG00005008737)	UCHL3 (ENSPCTG00005008650)	COMMD6 (ENSPCTG00005008603)	TBC1D4 (ENSPCTG00005008106)	KLF12 (ENSPCTG00005008057)	ENSPCTG00005008037	KLF5 (ENSPCTG00005008002)	ENSPCTG00005007978	ENSPCTG00005007954	PIBF1 (ENSPCTG00005007892)	DIS3 (ENSPCTG00005007725)	BORA (ENSPCTG00005007642)	ENSPCTG00005007621	ENSPCTG00005007587 #22	DACH1 (ENSPCTG00005007043)	ENSPCTG00005006965	KLHL1 (ENSPCTG00005006854)	ENSPCTG00005006815	ENSPCTG00005006787	PCDH9 (ENSPCTG00005006709)	ENSPCTG00005006677	ENSPCTG00005006666	PCDH20 (ENSPCTG00005006653)	ENSPCTG00005006637	ENSPCTG00005006621	TDRD3 (ENSPCTG00005006554)	ENSPCTG00005006500	DIAPH3 (ENSPCTG00005006190)	ENSPCTG00005006120
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT01030000235815	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00730000111209 #35	ENSGT00390000006503.a.k #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000154169.A.l
Dolphin	MODERN SPECIES	2801																SERBP1 (ENSTTRG00000003520) #22	IL12RB2 (ENSTTRG00000003519) #23
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00950000182926.a.b	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT01030000235815	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00550000074844.f	ENSGT00730000111209 #35	ENSGT00390000006503.a.k #36	ENSGT00940000158755 #37	ENSGT00390000017639.b
Monodontidae	ANCESTRAL SPECIES		ENSGT00950000182926.a.b	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT01030000235815	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00550000074844.f	ENSGT00730000111209 #35	ENSGT00390000006503.a.k #36	ENSGT00940000158755 #37	ENSGT00390000017639.b
Narwhal	MODERN SPECIES	304	ZRANB2 (ENSMMNG00015004587) #8	PTGER3 (ENSMMNG00015004807) #9	ENSMMNG00015005022	ENSMMNG00015005137	CTH (ENSMMNG00015005464) #10	ANKRD13C (ENSMMNG00015006243) #11	SRSF11 (ENSMMNG00015006795) #13	LRRC40 (ENSMMNG00015007303) #14	LRRC7 (ENSMMNG00015008751) #15	DEPDC1 (ENSMMNG00015010717) #17	RPE65 (ENSMMNG00015011109) #18	WLS (ENSMMNG00015011864) #19	DIRAS3 (ENSMMNG00015012826) #20	GNG12 (ENSMMNG00015012942)	GADD45A (ENSMMNG00015013267) #21	SERBP1 (ENSMMNG00015013615) #22	IL12RB2 (ENSMMNG00015014038) #23	IL23R (ENSMMNG00015014588) #25	ENSMMNG00015015024	SLC35D1 (ENSMMNG00015015256) #27	MIER1 (ENSMMNG00015015671) #29	DNAI4 (ENSMMNG00015017222) #30	ENSMMNG00015018080	INSL5 (ENSMMNG00015018236) #31	DYNLT5 (ENSMMNG00015018432) #32	SGIP1 (ENSMMNG00015018941) #33	PDE4B (ENSMMNG00015020127) #34	ENSMMNG00015021196	LEPR (ENSMMNG00015021685) #35	ENSMMNG00015021954 #36	DNAJC6 (ENSMMNG00015022012) #37
Beluga whale	MODERN SPECIES	74	NEGR1 (ENSDLEG00000021457)	ZRANB2 (ENSDLEG00000021455) #8	PTGER3 (ENSDLEG00000021453) #9	CTH (ENSDLEG00000021449) #10	ANKRD13C (ENSDLEG00000021447) #11	SRSF11 (ENSDLEG00000021445) #13	ENSDLEG00000021443 #13	LRRC40 (ENSDLEG00000021441) #14	LRRC7 (ENSDLEG00000021431) #15	DEPDC1 (ENSDLEG00000021426) #17	RPE65 (ENSDLEG00000021421) #18	WLS (ENSDLEG00000021417) #19	DIRAS3 (ENSDLEG00000021415) #20	GNG12 (ENSDLEG00000021413)	GADD45A (ENSDLEG00000021410) #21	SERBP1 (ENSDLEG00000021405) #22	IL12RB2 (ENSDLEG00000021402) #23	IL23R (ENSDLEG00000021400) #25	C1orf141 (ENSDLEG00000021395) #26	SLC35D1 (ENSDLEG00000021393) #27	MIER1 (ENSDLEG00000021386) #29	ENSDLEG00000021383	DNAI4 (ENSDLEG00000021380) #30	ENSDLEG00000021377	TCTEX1D1 (ENSDLEG00000021374) #32	SGIP1 (ENSDLEG00000021360) #33	ENSDLEG00000021356	PDE4B (ENSDLEG00000021354) #34	LEPR (ENSDLEG00000021320) #35	ENSDLEG00000021312 #36	DNAJC6 (ENSDLEG00000021307) #37
Vaquita	MODERN SPECIES		NEGR1 (ENSPSNG00000001115)	ZRANB2 (ENSPSNG00000001069) #8	PTGER3 (ENSPSNG00000001032) #9	ENSPSNG00000001013	CTH (ENSPSNG00000000964) #10	ANKRD13C (ENSPSNG00000000907) #11	SRSF11 (ENSPSNG00000000868) #13	LRRC40 (ENSPSNG00000000830) #14	LRRC7 (ENSPSNG00000000776) #15	DEPDC1 (ENSPSNG00000000663) #17	RPE65 (ENSPSNG00000000590) #18	WLS (ENSPSNG00000000517) #19	DIRAS3 (ENSPSNG00000000480) #20	GNG12 (ENSPSNG00000000467)	GADD45A (ENSPSNG00000000436) #21	SERBP1 (ENSPSNG00000000393) #22	IL12RB2 (ENSPSNG00000000245) #23	IL23R (ENSPSNG00000000116) #25	ENSPSNG00000000087	SLC35D1 (ENSPSNG00000000078) #27	MIER1 (ENSPSNG00000000044) #29	ENSPSNG00000000018	DNAI4 (ENSPSNG00000003982) #30	INSL5 (ENSPSNG00000003955) #31	DYNLT5 (ENSPSNG00000003942) #32	SGIP1 (ENSPSNG00000003872) #33	ENSPSNG00000003826	PDE4B (ENSPSNG00000003736) #34	LEPR (ENSPSNG00000003546) #35	LEPROT (ENSPSNG00000003475) #36	DNAJC6 (ENSPSNG00000003393) #37
Blue whale	DUPLICATION
Blue whale	MODERN SPECIES		NEGR1 (ENSBMSG00010005031)	ZRANB2 (ENSBMSG00010005010) #8	PTGER3 (ENSBMSG00010004995) #9	ENSBMSG00010004991	CTH (ENSBMSG00010004973) #10	ANKRD13C (ENSBMSG00010004950) #11	SRSF11 (ENSBMSG00010004935) #13	LRRC40 (ENSBMSG00010004930) #14	LRRC7 (ENSBMSG00010004781) #15	DEPDC1 (ENSBMSG00010004720) #17	RPE65 (ENSBMSG00010004694) #18	WLS (ENSBMSG00010004687) #19	ENSBMSG00010004680 #20	GNG12 (ENSBMSG00010004664)	GADD45A (ENSBMSG00010004628) #21	ENSBMSG00010004579 #22	IL12RB2 (ENSBMSG00010004316) #23	IL23R (ENSBMSG00010004266) #25	ENSBMSG00010004253	SLC35D1 (ENSBMSG00010004244) #27	MIER1 (ENSBMSG00010004136) #29	DNAI4 (ENSBMSG00010004008) #30	INSL5 (ENSBMSG00010003985) #31	DYNLT5 (ENSBMSG00010003974) #32	SGIP1 (ENSBMSG00010003712) #33	PDE4B (ENSBMSG00010003487) #34	LEPR (ENSBMSG00010003228) #35	LEPROT (ENSBMSG00010003180) #36	DNAJC6 (ENSBMSG00010003114) #37	ENSBMSG00010003088	ENSBMSG00010003064
Blue whale	MODERN SPECIES	15	ENSBMSG00010003398	TIPARP (ENSBMSG00010003410)	LEKR1 (ENSBMSG00010003429)	CCNL1 (ENSBMSG00010003451)	VEPH1 (ENSBMSG00010003516)	PTX3 (ENSBMSG00010003568)	ENSBMSG00010003577	SHOX2 (ENSBMSG00010003594)	RSRC1 (ENSBMSG00010003618)	ENSBMSG00010003662	GFM1 (ENSBMSG00010003975)	LXN (ENSBMSG00010003995)	RARRES1 (ENSBMSG00010004015)	ENSBMSG00010004038	ENSBMSG00010004091	ENSBMSG00010004107 #22	IQCJ (ENSBMSG00010004126)	ENSBMSG00010004177	IL12A (ENSBMSG00010004549)	ENSBMSG00010004653	ENSBMSG00010004671	C3orf80 (ENSBMSG00010004679)	IFT80 (ENSBMSG00010004686)	SMC4 (ENSBMSG00010004719)	TRIM59 (ENSBMSG00010004844)	KPNA4 (ENSBMSG00010000052)	ARL14 (ENSBMSG00010000091)	PPM1L (ENSBMSG00010000126)	ENSBMSG00010000159	B3GALNT1 (ENSBMSG00010000184)	SPTSSB (ENSBMSG00010000213)
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT01010000228719	ENSGT00940000156968 #14	ENSGT00940000165286	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568
Carnivora	ANCESTRAL SPECIES	1	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT01010000228719	ENSGT00940000156968 #14	ENSGT00940000165286	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT01030000238341
Felidae	ANCESTRAL SPECIES	10	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000165286	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT01030000238341	ENSGT00940000157092
Panthera	ANCESTRAL SPECIES	4	ENSGT00940000158854.g.a	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000165286	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT01030000238341	ENSGT00940000157092
Tiger	MODERN SPECIES	311	ENSPTIG00000006252	ENSPTIG00000015221	NEGR1 (ENSPTIG00000015387)	ZRANB2 (ENSPTIG00000017134) #8	CTH (ENSPTIG00000019906) #10	ANKRD13C (ENSPTIG00000005530) #11	SRSF11 (ENSPTIG00000008536) #13	LRRC40 (ENSPTIG00000010337) #14	ENSPTIG00000011749	ENSPTIG00000012986 #15	DEPDC1 (ENSPTIG00000014898) #17	RPE65 (ENSPTIG00000016708) #18	WLS (ENSPTIG00000017665) #19	GNG12 (ENSPTIG00000000039)	GADD45A (ENSPTIG00000002992) #21	SERBP1 (ENSPTIG00000005938) #22	IL12RB2 (ENSPTIG00000007381) #23	IL23R (ENSPTIG00000013297) #25	C1orf141 (ENSPTIG00000014969) #26	SLC35D1 (ENSPTIG00000016895) #27	MIER1 (ENSPTIG00000017971) #29	DNAI4 (ENSPTIG00000012909) #30	DYNLT5 (ENSPTIG00000015008) #32	SGIP1 (ENSPTIG00000016312) #33	PDE4B (ENSPTIG00000007272) #34	LEPR (ENSPTIG00000015515) #35	LEPROT (ENSPTIG00000017653) #36	DNAJC6 (ENSPTIG00000018599) #37	ENSPTIG00000021852	JAK1 (ENSPTIG00000003605)	RAVER2 (ENSPTIG00000009389)
Panthera_a	ANCESTRAL SPECIES	11	ENSGT00940000158854.g.a	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000165286	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT01030000238341	ENSGT00940000157092
lion	MODERN SPECIES	8	LRRIQ3 (ENSPLOG00000009451)	ENSPLOG00000009529	NEGR1 (ENSPLOG00000009541)	ZRANB2 (ENSPLOG00000009609) #8	PTGER3 (ENSPLOG00000009711) #9	CTH (ENSPLOG00000009821) #10	ANKRD13C (ENSPLOG00000009877) #11	SRSF11 (ENSPLOG00000009962) #13	LRRC40 (ENSPLOG00000010064) #14	LRRC7 (ENSPLOG00000010287) #15	DEPDC1 (ENSPLOG00000010722) #17	RPE65 (ENSPLOG00000010779) #18	WLS (ENSPLOG00000011018) #19	GNG12 (ENSPLOG00000011515)	GADD45A (ENSPLOG00000011555) #21	SERBP1 (ENSPLOG00000011662) #22	IL12RB2 (ENSPLOG00000011722) #23	IL23R (ENSPLOG00000011807) #25	C1orf141 (ENSPLOG00000011956) #26	SLC35D1 (ENSPLOG00000012137) #27	MIER1 (ENSPLOG00000012250) #29	DNAI4 (ENSPLOG00000012806) #30	DYNLT5 (ENSPLOG00000012982) #32	SGIP1 (ENSPLOG00000013099) #33	PDE4B (ENSPLOG00000006308) #34	LEPR (ENSPLOG00000006675) #35	DNAJC6 (ENSPLOG00000006842) #37	ENSPLOG00000007140	ENSPLOG00000007171	JAK1 (ENSPLOG00000007282)	RAVER2 (ENSPLOG00000007347)
leopard	MODERN SPECIES	16	ENSPPRG00000017420	NEGR1 (ENSPPRG00000010074)	ZRANB2 (ENSPPRG00000008962) #8	PTGER3 (ENSPPRG00000007485) #9	CTH (ENSPPRG00000005228) #10	ANKRD13C (ENSPPRG00000003766) #11	SRSF11 (ENSPPRG00000002720) #13	LRRC40 (ENSPPRG00000000254) #14	ENSPPRG00000022341	ENSPPRG00000017380 #15	DEPDC1 (ENSPPRG00000014611) #17	RPE65 (ENSPPRG00000013670) #18	WLS (ENSPPRG00000013013) #19	GNG12 (ENSPPRG00000009675)	GADD45A (ENSPPRG00000009546) #21	SERBP1 (ENSPPRG00000008971) #22	IL12RB2 (ENSPPRG00000008198) #23	IL23R (ENSPPRG00000004538) #25	C1orf141 (ENSPPRG00000004147) #26	SLC35D1 (ENSPPRG00000003133) #27	MIER1 (ENSPPRG00000002692) #29	DNAI4 (ENSPPRG00000022534) #30	DYNLT5 (ENSPPRG00000019016) #32	SGIP1 (ENSPPRG00000017177) #33	PDE4B (ENSPPRG00000011824) #34	LEPR (ENSPPRG00000006910) #35	LEPROT (ENSPPRG00000002176) #36	DNAJC6 (ENSPPRG00000002001) #37	ENSPPRG00000000962	ENSPPRG00000000367	JAK1 (ENSPPRG00000022662)
Cat	MODERN SPECIES	239	ENSFCAG00000027931	NEGR1 (ENSFCAG00000033201)	ENSFCAG00000052553	ZRANB2 (ENSFCAG00000028246) #8	PTGER3 (ENSFCAG00000006185) #9	CTH (ENSFCAG00000012450) #10	ANKRD13C (ENSFCAG00000012449) #11	SRSF11 (ENSFCAG00000012448) #13	LRRC40 (ENSFCAG00000026681) #14	LRRC7 (ENSFCAG00000023714) #15	DEPDC1 (ENSFCAG00000012566) #17	RPE65 (ENSFCAG00000012565) #18	WLS (ENSFCAG00000012564) #19	GNG12 (ENSFCAG00000045903)	GADD45A (ENSFCAG00000002987) #21	SERBP1 (ENSFCAG00000000606) #22	IL12RB2 (ENSFCAG00000001940) #23	IL23R (ENSFCAG00000001939) #25	CC1H1orf141 (ENSFCAG00000044655) #26	SLC35D1 (ENSFCAG00000005509) #27	MIER1 (ENSFCAG00000028898) #29	DNAI4 (ENSFCAG00000023522) #30	DYNLT5 (ENSFCAG00000038222) #32	SGIP1 (ENSFCAG00000011575) #33	PDE4B (ENSFCAG00000030002) #34	LEPR (ENSFCAG00000011703) #35	DNAJC6 (ENSFCAG00000008367) #37	AK4 (ENSFCAG00000033540)	JAK1 (ENSFCAG00000001953)	RAVER2 (ENSFCAG00000022781)	CACHD1 (ENSFCAG00000010902)
Caniformia	ANCESTRAL SPECIES	2	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT01010000228719	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT01030000238341
Canidae	ANCESTRAL SPECIES	11															ENSGT00390000018665.m.b	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092
Canis_lupus	ANCESTRAL SPECIES	5	ENSGT00940000161274	ENSGT00390000017379	ENSGT00390000011596.a	ENSGT00940000153653.a.b.a.b	ENSGT00390000009864	ENSGT00390000004368	ENSGT00940000155286	ENSGT00390000013910	ENSGT00940000156623	ENSGT00940000158171	ENSGT00390000006617	ENSGT00390000014840.a	ENSGT00940000160875	ENSGT01030000234586.A.a.b	ENSGT00390000018665.m.b	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00950000183030.m.a.b.a.b
Dingo	MODERN SPECIES	373	COPS3 (ENSCAFG00020020887)	FLCN (ENSCAFG00020020885)	PLD6 (ENSCAFG00020020882)	ENSCAFG00020020848	ENSCAFG00020020839	USP22 (ENSCAFG00020020826)	DHRS7B (ENSCAFG00020020817)	TMEM11 (ENSCAFG00020020810)	NATD1 (ENSCAFG00020020807)	MAP2K3 (ENSCAFG00020020804)	ENSCAFG00020020791	ENSCAFG00020020789	ENSCAFG00020020774	ENSCAFG00020020768	ENSCAFG00020020759	SERBP1 (ENSCAFG00020020723) #22	IL12RB2 (ENSCAFG00020020634) #23	IL23R (ENSCAFG00020020599) #25	C1orf141 (ENSCAFG00020020595) #26	SLC35D1 (ENSCAFG00020020579) #27	MIER1 (ENSCAFG00020020562) #29	DNAI4 (ENSCAFG00020020542) #30	DYNLT5 (ENSCAFG00020020540) #32	SGIP1 (ENSCAFG00020020476) #33	PDE4B (ENSCAFG00020020440) #34	ENSCAFG00020020435	ENSCAFG00020020432	LEPR (ENSCAFG00020020425) #35	LEPROT (ENSCAFG00020020424) #36	DNAJC6 (ENSCAFG00020020422) #37	ENSCAFG00020020420
Dog	MODERN SPECIES	33	FLCN (ENSCAFG00845024691)	PLD6 (ENSCAFG00845024817)	MPRIP (ENSCAFG00845024946)	TNFRSF13B (ENSCAFG00845025488)	ENSCAFG00845025581	ENSCAFG00845025849	TMEM11 (ENSCAFG00845026180)	NATD1 (ENSCAFG00845026261)	MAP2K3 (ENSCAFG00845026332)	KCNJ12 (ENSCAFG00845026512)	ENSCAFG00845026571	ENSCAFG00845026623	ENSCAFG00845026663	ENSCAFG00845026706	ENSCAFG00845026757	SERBP1 (ENSCAFG00845026795) #22	IL12RB2 (ENSCAFG00845026911) #23	IL23R (ENSCAFG00845027041) #25	C1orf141 (ENSCAFG00845027193) #26	SLC35D1 (ENSCAFG00845027306) #27	MIER1 (ENSCAFG00845027592) #29	ENSCAFG00845027883	DNAI4 (ENSCAFG00845027932) #30	TCTEX1D1 (ENSCAFG00845028056) #32	SGIP1 (ENSCAFG00845028227) #33	PDE4B (ENSCAFG00845028786) #34	ENSCAFG00845029063	LEPR (ENSCAFG00845029124) #35	LEPROT (ENSCAFG00845029345) #36	DNAJC6 (ENSCAFG00845029438) #37	AK4 (ENSCAFG00845029543)
Red fox	MODERN SPECIES	179												ENSVVUG00000015611	ENSVVUG00000015607	ENSVVUG00000015604	ENSVVUG00000015599	SERBP1 (ENSVVUG00000015590) #22	IL12RB2 (ENSVVUG00000015579) #23	IL23R (ENSVVUG00000015557) #25	SLC35D1 (ENSVVUG00000015506) #27	MIER1 (ENSVVUG00000015467) #29	DNAI4 (ENSVVUG00000015443) #30	DYNLT5 (ENSVVUG00000015438) #32	SGIP1 (ENSVVUG00000015413) #33	PDE4B (ENSVVUG00000015400) #34	ENSVVUG00000015396 #34	ENSVVUG00000015390	LEPR (ENSVVUG00000014079) #35	LEPROT (ENSVVUG00000014028) #36	DNAJC6 (ENSVVUG00000014008) #37	AK4 (ENSVVUG00000014004)	ENSVVUG00000014003
Caniformia_b	ANCESTRAL SPECIES	1	ENSGT00940000159289	ENSGT00940000154612.m.b.d	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT01030000238341
Mustelinae	ANCESTRAL SPECIES	39	ENSGT00940000159289	ENSGT00940000154612.m.b.d	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092
American mink	MODERN SPECIES	57										DEPDC1 (ENSNVIG00000011335) #17	RPE65 (ENSNVIG00000011309) #18	WLS (ENSNVIG00000011264) #19	DIRAS3 (ENSNVIG00000011249) #20	GBG12 (ENSNVIG00000011236)	GADD45A (ENSNVIG00000011189) #21	SERBP1 (ENSNVIG00000011142) #22	IL12RB2 (ENSNVIG00000011029) #23	IL23R (ENSNVIG00000010999) #25	ENSNVIG00000010983 #26	SLC35D1 (ENSNVIG00000010971) #27	MIER1 (ENSNVIG00000010880) #29	DNAI4 (ENSNVIG00000010851) #30	DYNLT5 (ENSNVIG00000010848) #32	SGIP1 (ENSNVIG00000010770) #33	PDE4B (ENSNVIG00000010683) #34	LEPR (ENSNVIG00000010636) #35	LEPROT (ENSNVIG00000010602) #36	AUXI (ENSNVIG00000010505) #37	ENSNVIG00000010479	JAK1 (ENSNVIG00000010400)	RAVER2 (ENSNVIG00000010354)
Ferret	MODERN SPECIES	254	ZRANB2 (ENSMPUG00000000917) #8	PTGER3 (ENSMPUG00000000913) #9	ENSMPUG00000018477	ENSMPUG00000000901	CTH (ENSMPUG00000000898) #10	ANKRD13C (ENSMPUG00000000895) #11	SRSF11 (ENSMPUG00000000892) #13	LRRC40 (ENSMPUG00000000890) #14	LRRC7 (ENSMPUG00000000888) #15	DEPDC1 (ENSMPUG00000000887) #17	RPE65 (ENSMPUG00000000810) #18	WLS (ENSMPUG00000000807) #19	ENSMPUG00000000803 #20	ENSMPUG00000000800	GADD45A (ENSMPUG00000000798) #21	SERBP1 (ENSMPUG00000000797) #22	IL12RB2 (ENSMPUG00000000794) #23	ENSMPUG00000000792	IL23R (ENSMPUG00000000781) #25	C1orf141 (ENSMPUG00000000780) #26	SLC35D1 (ENSMPUG00000000778) #27	MIER1 (ENSMPUG00000000774) #29	DNAI4 (ENSMPUG00000000772) #30	DYNLT5 (ENSMPUG00000000770) #32	SGIP1 (ENSMPUG00000000764) #33	PDE4B (ENSMPUG00000000760) #34	ENSMPUG00000000757 #34	ENSMPUG00000000756	LEPR (ENSMPUG00000000734) #35	LEPROT (ENSMPUG00000000726) #36	DNAJC6 (ENSMPUG00000000723) #37
Ursidae	DUPLICATION
Ursidae	ANCESTRAL SPECIES																	ENSGT00520000055591.a.lb #22
Giant Panda	MODERN SPECIES	2279																ENSAMEG00000026460 #22
Ursidae	ANCESTRAL SPECIES		ENSGT00390000004404	ENSGT00940000159289	ENSGT00940000154612.m.b.d	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B.b #18	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a.mb #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT01030000238341
Ursus	ANCESTRAL SPECIES	18	ENSGT00390000004404	ENSGT00940000159289	ENSGT00940000154612.m.b.d	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B.b #18	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a.mb #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092
American black bear	MODERN SPECIES	4452																SERBP1 (ENSUAMG00000021299) #22	IL12RB2 (ENSUAMG00000021336) #23
Polar bear	MODERN SPECIES	170	NEGR1 (ENSUMAG00000006553)	ENSUMAG00000006557	ZRANB2 (ENSUMAG00000006559) #8	PTGER3 (ENSUMAG00000006569) #9	ENSUMAG00000006594	CTH (ENSUMAG00000006601) #10	ANKRD13C (ENSUMAG00000006610) #11	SRSF11 (ENSUMAG00000006618) #13	LRRC40 (ENSUMAG00000006621) #14	LRRC7 (ENSUMAG00000006650) #15	DEPDC1 (ENSUMAG00000006778) #17	RPE65 (ENSUMAG00000006787) #18	WLS (ENSUMAG00000006798) #19	GNG12 (ENSUMAG00000006831)	GADD45A (ENSUMAG00000006834) #21	SERBP1 (ENSUMAG00000006841) #22	IL12RB2 (ENSUMAG00000006846) #23	IL23R (ENSUMAG00000006850) #25	C1orf141 (ENSUMAG00000006856) #26	SLC35D1 (ENSUMAG00000006858) #27	MIER1 (ENSUMAG00000006869) #29	DNAI4 (ENSUMAG00000006884) #30	DYNLT5 (ENSUMAG00000006901) #32	SGIP1 (ENSUMAG00000006920) #33	PDE4B (ENSUMAG00000007042) #34	ENSUMAG00000007396	LEPR (ENSUMAG00000007490) #35	LEPROT (ENSUMAG00000008414) #36	DNAJC6 (ENSUMAG00000008423) #37	ENSUMAG00000008451	JAK1 (ENSUMAG00000008476)
Giant Panda	MODERN SPECIES	11	FPGT (ENSAMEG00000027489)	LRRIQ3 (ENSAMEG00000031314)	NEGR1 (ENSAMEG00000012764)	ZRANB2 (ENSAMEG00000003845) #8	PTGER3 (ENSAMEG00000003871) #9	CTH (ENSAMEG00000000028) #10	ANKRD13C (ENSAMEG00000000027) #11	SRSF11 (ENSAMEG00000024726) #13	LRRC40 (ENSAMEG00000011362) #14	LRRC7 (ENSAMEG00000011407) #15	DEPDC1 (ENSAMEG00000000402) #17	RPE65 (ENSAMEG00000000442) #18	WLS (ENSAMEG00000004493) #19	GNG12 (ENSAMEG00000004527)	GADD45A (ENSAMEG00000004529) #21	SERBP1 (ENSAMEG00000004536) #22	IL12RB2 (ENSAMEG00000004570) #23	IL23R (ENSAMEG00000004611) #25	C1orf141 (ENSAMEG00000004616) #26	SLC35D1 (ENSAMEG00000004626) #27	MIER1 (ENSAMEG00000004657) #29	DNAI4 (ENSAMEG00000004681) #30	DYNLT5 (ENSAMEG00000004714) #32	SGIP1 (ENSAMEG00000004727) #33	PDE4B (ENSAMEG00000018054) #34	LEPR (ENSAMEG00000018031) #35	LEPROT (ENSAMEG00000025091) #36	DNAJC6 (ENSAMEG00000014950) #37	AK4 (ENSAMEG00000030587)	ENSAMEG00000020190	JAK1 (ENSAMEG00000014980)
Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000165286	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568
Chiroptera	ANCESTRAL SPECIES		ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568
Microchiroptera	ANCESTRAL SPECIES	1	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568
Greater horseshoe bat	DUPLICATION
Greater horseshoe bat	MODERN SPECIES	27	NEGR1 (ENSRFEG00010005020)	ZRANB2 (ENSRFEG00010005004) #8	ENSRFEG00010004991 #9	ENSRFEG00010004976 #10	ENSRFEG00010004954 #11	SRSF11 (ENSRFEG00010004928) #13	LRRC40 (ENSRFEG00010004902) #14	LRRC7 (ENSRFEG00010004869) #15	ENSRFEG00010004831	ENSRFEG00010004819	DEPDC1 (ENSRFEG00010004806) #17	RPE65 (ENSRFEG00010004778) #18	WLS (ENSRFEG00010004748) #19	DIRAS3 (ENSRFEG00010004732) #20	GADD45A (ENSRFEG00010004705) #21	ENSRFEG00010004678 #22	IL12RB2 (ENSRFEG00010004653) #23	IL23R (ENSRFEG00010004610) #25	C1orf141 (ENSRFEG00010004583) #26	SLC35D1 (ENSRFEG00010004543) #27	MIER1 (ENSRFEG00010004493) #29	DNAI4 (ENSRFEG00010004457) #30	INSL5 (ENSRFEG00010004442) #31	DYNLT5 (ENSRFEG00010004431) #32	SGIP1 (ENSRFEG00010004327) #33	ENSRFEG00010004239	PDE4B (ENSRFEG00010004177) #34	LEPR (ENSRFEG00010004114) #35	LEPROT (ENSRFEG00010004090) #36	DNAJC6 (ENSRFEG00010003981) #37	ENSRFEG00010003929
Greater horseshoe bat	MODERN SPECIES	17	VPS26B (ENSRFEG00010015072)	NCAPD3 (ENSRFEG00010014962)	JAM3 (ENSRFEG00010014863)	IGSF9B (ENSRFEG00010014759)	SPATA19 (ENSRFEG00010014631)	OPCML (ENSRFEG00010014281)	ENSRFEG00010014206	NTM (ENSRFEG00010013634)	SNX19 (ENSRFEG00010013391)	ADAMTS15 (ENSRFEG00010013340)	ENSRFEG00010013185	ZBTB44 (ENSRFEG00010013131)	ST14 (ENSRFEG00010013032)	ENSRFEG00010012982	APLP2 (ENSRFEG00010012749)	ENSRFEG00010012622 #22	PRDM10 (ENSRFEG00010011775)	NFRKB (ENSRFEG00010011677)	TMEM45B (ENSRFEG00010011612)	ENSRFEG00010011584	BARX2 (ENSRFEG00010011522)	ARHGAP32 (ENSRFEG00010011158)	KCNJ5 (ENSRFEG00010011096)	KCNJ1 (ENSRFEG00010011037)	FLI1 (ENSRFEG00010010862)	ETS1 (ENSRFEG00010010620)	ENSRFEG00010010555	ENSRFEG00010010506	KIRREL3 (ENSRFEG00010010202)	ST3GAL4 (ENSRFEG00010009892)	DCPS (ENSRFEG00010009838)
Microbat	MODERN SPECIES	1000													ENSMLUG00000012569 #20	GNG12 (ENSMLUG00000010812)	GADD45A (ENSMLUG00000004708) #21	SERBP1 (ENSMLUG00000001424) #22	IL12RB2 (ENSMLUG00000001412) #23	IL23R (ENSMLUG00000017295) #25	ENSMLUG00000024118 #26	SLC35D1 (ENSMLUG00000000562) #27	MIER1 (ENSMLUG00000000552) #29	DNAI4 (ENSMLUG00000000536) #30	DYNLT5 (ENSMLUG00000000528) #32	SGIP1 (ENSMLUG00000000516) #33	ENSMLUG00000027559	PDE4B (ENSMLUG00000009026) #34	ENSMLUG00000028998	LEPR (ENSMLUG00000016208) #35	LEPROT (ENSMLUG00000028850) #36	DNAJC6 (ENSMLUG00000009642) #37	ENSMLUG00000009622
Megabat	MODERN SPECIES	3474																SERBP1 (ENSPVAG00000004054) #22	IL12RB2 (ENSPVAG00000004052) #23
Equus	ANCESTRAL SPECIES	3	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000165286	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665.j #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092
Donkey	MODERN SPECIES	7	NEGR1 (ENSEASG00005007828)	ZRANB2 (ENSEASG00005007831) #8	PTGER3 (ENSEASG00005007839) #9	CTH (ENSEASG00005007840) #10	ANKRD13C (ENSEASG00005007844) #11	SRSF11 (ENSEASG00005007847) #13	LRRC40 (ENSEASG00005007850) #14	ENSEASG00005007851	ENSEASG00005007856 #15	DEPDC1 (ENSEASG00005007861) #17	RPE65 (ENSEASG00005007863) #18	WLS (ENSEASG00005007867) #19	DIRAS3 (ENSEASG00005038197) #20	GNG12 (ENSEASG00005007872)	GADD45A (ENSEASG00005024228) #21	SERBP1 (ENSEASG00005007881) #22	IL12RB2 (ENSEASG00005007885) #23	IL23R (ENSEASG00005007895) #25	C1orf141 (ENSEASG00005007907) #26	SLC35D1 (ENSEASG00005028888) #27	MIER1 (ENSEASG00005007916) #29	DNAI4 (ENSEASG00005007939) #30	INSL5 (ENSEASG00005024533) #31	DYNLT5 (ENSEASG00005037593) #32	SGIP1 (ENSEASG00005007954) #33	PDE4B (ENSEASG00005007980) #34	ENSEASG00005026002 #34	LEPR (ENSEASG00005008026) #35	LEPROT (ENSEASG00005037559) #36	DNAJC6 (ENSEASG00005008132) #37	ENSEASG00005008138
Horse	MODERN SPECIES	26	FPGT (ENSECAG00000039694)	LRRIQ3 (ENSECAG00000035457)	NEGR1 (ENSECAG00000014027)	ZRANB2 (ENSECAG00000014173) #8	PTGER3 (ENSECAG00000014239) #9	CTH (ENSECAG00000015050) #10	ANKRD13C (ENSECAG00000016794) #11	SRSF11 (ENSECAG00000017756) #13	LRRC40 (ENSECAG00000019554) #14	LRRC7 (ENSECAG00000006937) #15	DEPDC1 (ENSECAG00000008461) #17	RPE65 (ENSECAG00000010170) #18	WLS (ENSECAG00000012045) #19	DIRAS3 (ENSECAG00000030001) #20	GADD45A (ENSECAG00000040631) #21	SERBP1 (ENSECAG00000014617) #22	IL12RB2 (ENSECAG00000016537) #23	IL23R (ENSECAG00000017239) #25	C5H1orf141 (ENSECAG00000019495) #26	SLC35D1 (ENSECAG00000019542) ##27	MIER1 (ENSECAG00000020475) #29	DNAI4 (ENSECAG00000023875) #30	SGIP1 (ENSECAG00000000852) #33	PDE4B (ENSECAG00000011003) #34	LEPR (ENSECAG00000013863) #35	LEPROT (ENSECAG00000016346) #36	DNAJC6 (ENSECAG00000016430) #37	AK4 (ENSECAG00000018332)	JAK1 (ENSECAG00000018673)	RAVER2 (ENSECAG00000022014)	CACHD1 (ENSECAG00000022152)
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00520000055591.a #22
Common shrew	MODERN SPECIES	3005																SERBP1 (ENSSARG00000000803) #22
Hedgehog	MODERN SPECIES	16407																SERBP1 (ENSEEUG00000000611) #22
Atlantogenata	ANCESTRAL SPECIES	11	ENSGT00390000004404.d	ENSGT00940000159289	ENSGT00730000111078.j.b #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092
Xenarthra	ANCESTRAL SPECIES	39			ENSGT00730000111078.i #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00950000183297	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568
Sloth	MODERN SPECIES	3496																ENSCHOG00000010984 #22
Armadillo	MODERN SPECIES	4628		ZRANB2 (ENSDNOG00000010455) #8	PTGER3 (ENSDNOG00000010437) #9	CTH (ENSDNOG00000045200) #10	ENSDNOG00000046207	ANKRD13C (ENSDNOG00000005594) #11	SRSF11 (ENSDNOG00000008603) #13	LRRC40 (ENSDNOG00000001807) #14	LRRC7 (ENSDNOG00000001801) #15	DEPDC1 (ENSDNOG00000040135) #17	RPE65 (ENSDNOG00000037707) #18	WLS (ENSDNOG00000003500) #19	DIRAS3 (ENSDNOG00000039860) #20	GNG12 (ENSDNOG00000040556)	GADD45A (ENSDNOG00000038488) #21	SERBP1 (ENSDNOG00000014249) #22	IL12RB2 (ENSDNOG00000007767) #23	IL23R (ENSDNOG00000008682) #25	C1orf141 (ENSDNOG00000031369) #26	SLC35D1 (ENSDNOG00000013582) #27	ENSDNOG00000013550 #29	DNAI4 (ENSDNOG00000015107) #30	INSL5 (ENSDNOG00000045210) #31	DYNLT5 (ENSDNOG00000039350) #32	SGIP1 (ENSDNOG00000015078) #33	PDE4B (ENSDNOG00000034108) #34	ENSDNOG00000033832	ENSDNOG00000044101	LEPR (ENSDNOG00000004616) #35	LEPROT (ENSDNOG00000024822) #36	DNAJC6 (ENSDNOG00000004371) #37
Afrotheria	ANCESTRAL SPECIES	21	ENSGT00780000122095	ENSGT00940000159289	ENSGT00730000111078.j.b #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092
Afrotheria_a	ANCESTRAL SPECIES	20	ENSGT00780000122095	ENSGT00940000159289	ENSGT00730000111078.j.b #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00390000005897 #19	ENSGT00940000164094 #20	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00390000010146 #26	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092
Elephant	DUPLICATION
Elephant	DUPLICATION
Elephant	DUPLICATION
Elephant	MODERN SPECIES	322																ENSLAFG00000027342 #22
Elephant	MODERN SPECIES	344																ENSLAFG00000029367 #22
Elephant	MODERN SPECIES	292																ENSLAFG00000029193 #22
Elephant	MODERN SPECIES	145	FPGT (ENSLAFG00000027887)	ENSLAFG00000003594	ZRANB2 (ENSLAFG00000017760) #8	PTGER3 (ENSLAFG00000018598) #9	CTH (ENSLAFG00000018687) #10	ANKRD13C (ENSLAFG00000015894) #11	SRSF11 (ENSLAFG00000015882) #13	LRRC40 (ENSLAFG00000004632) #14	LRRC7 (ENSLAFG00000021807) #15	DEPDC1 (ENSLAFG00000013772) #17	RPE65 (ENSLAFG00000018223) #18	WLS (ENSLAFG00000022046) #19	ENSLAFG00000002162 #20	GNG12 (ENSLAFG00000003240)	GADD45A (ENSLAFG00000009362) #21	ENSLAFG00000000012 #22	IL12RB2 (ENSLAFG00000000010) #23	ENSLAFG00000030915	IL23R (ENSLAFG00000017639) #25	ENSLAFG00000022401 #26	SLC35D1 (ENSLAFG00000015854) #27	MIER1 (ENSLAFG00000015842) #29	DNAI4 (ENSLAFG00000015831) #30	ENSLAFG00000015826	DYNLT5 (ENSLAFG00000015819) #32	SGIP1 (ENSLAFG00000015802) #33	PDE4B (ENSLAFG00000018427) #34	LEPR (ENSLAFG00000003592) #35	LEPROT (ENSLAFG00000030966) #36	DNAJC6 (ENSLAFG00000008887) #37	ENSLAFG00000008098
Hyrax	MODERN SPECIES	3164																SERBP1 (ENSPCAG00000016670) #22
Tenrec	MODERN SPECIES	8889																SERBP1 (ENSETEG00000010024) #22	IL12RB2 (ENSETEG00000010020) #23
Marsupialia	ANCESTRAL SPECIES	3														ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00980000202328	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT01030000235815	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00980000203176	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37
Opossum	MODERN SPECIES	1	ENSMODG00000000356	NEGR1 (ENSMODG00000000482)	ZRANB2 (ENSMODG00000000504) #8	ENSMODG00000025217 #9	ANKRD13C (ENSMODG00000000531) #11	LRRC40 (ENSMODG00000000604) #14	LRRC7 (ENSMODG00000000649) #15	DEPDC1 (ENSMODG00000000686) #17	RPE65 (ENSMODG00000000710) #18	ENSMODG00000000721	ENSMODG00000040341	WLS (ENSMODG00000000754) #19	ENSMODG00000000766	GNG12 (ENSMODG00000000771)	GADD45A (ENSMODG00000000788) #21	SERBP1 (ENSMODG00000000802) #22	ENSMODG00000000859 #23	ENSMODG00000000877 #25	ENSMODG00000049167	ENSMODG00000000883 #27	DNAI4 (ENSMODG00000000951) #30	ENSMODG00000038287	DYNLT5 (ENSMODG00000042313) #32	SGIP1 (ENSMODG00000001029) #33	PDE4B (ENSMODG00000001072) #34	ENSMODG00000037798	ENSMODG00000050416	LEPR (ENSMODG00000001161) #35	LEPROT (ENSMODG00000044487) #36	DNAJC6 (ENSMODG00000001204) #37	ENSMODG00000001217
Marsupialia_b	ANCESTRAL SPECIES	27														ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00980000202328	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT01030000235815	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00980000203176	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37
Diprotodontia	ANCESTRAL SPECIES	39														ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00980000203176	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092
Diprotodontia_a	ANCESTRAL SPECIES	3														ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00980000203176	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092
koala	MODERN SPECIES	49	ZRANB2 (ENSPCIG00000001426) #8	PTGER3 (ENSPCIG00000001445) #9	CTH (ENSPCIG00000002022) #10	ANKRD13C (ENSPCIG00000002059) #11	SRSF11 (ENSPCIG00000002083) #13	LRRC40 (ENSPCIG00000002115) #14	ENSPCIG00000002303	ENSPCIG00000036862 #15	DEPDC1 (ENSPCIG00000021948) #17	RPE65 (ENSPCIG00000021949) #18	ENSPCIG00000021951	WLS (ENSPCIG00000021952) #19	ENSPCIG00000021954	GNG12 (ENSPCIG00000035012)	ENSPCIG00000028889 #21	SERBP1 (ENSPCIG00000028893) #22	ENSPCIG00000028896 #23	ENSPCIG00000028903 #25	ENSPCIG00000028905	SLC35D1 (ENSPCIG00000028909) #27	MIER1 (ENSPCIG00000028911) #29	DNAI4 (ENSPCIG00000028913) #30	DYNLT5 (ENSPCIG00000028915) #32	ENSPCIG00000028924 #33	PDE4B (ENSPCIG00000019187) #34	ENSPCIG00000034651	ENSPCIG00000034999	LEPR (ENSPCIG00000004493) #35	LEPROT (ENSPCIG00000031497) #36	DNAJC6 (ENSPCIG00000008073) #37	ENSPCIG00000015548
Common wonbat	MODERN SPECIES	1040	ENSVURG00010013108	CTH (ENSVURG00010013113) #10	ANKRD13C (ENSVURG00010013121) #11	SRSF11 (ENSVURG00010013206) #13	ENSVURG00010013222	LRRC40 (ENSVURG00010013229) #14	ENSVURG00010013244	ENSVURG00010013254 #15	DEPDC1 (ENSVURG00010013276) #17	RPE65 (ENSVURG00010013292) #18	ENSVURG00010013301	WLS (ENSVURG00010013312) #19	ENSVURG00010013330	GNG12 (ENSVURG00010013343)	GADD45A (ENSVURG00010013352) #21	SERBP1 (ENSVURG00010013378) #22	ENSVURG00010013710 #23	ENSVURG00010014051	ENSVURG00010014058 #25	SLC35D1 (ENSVURG00010014063) #27	MIER1 (ENSVURG00010014081) #29	DNAI4 (ENSVURG00010014101) #30	DYNLT5 (ENSVURG00010014110) #32	ENSVURG00010014117 #33	ENSVURG00010014127 #34	ENSVURG00010014153 #34	LEPR (ENSVURG00010014185) #35	LEPROT (ENSVURG00010014471) #36	DNAJC6 (ENSVURG00010014474) #37	ENSVURG00010014487	CACHD1 (ENSVURG00010014509)
Tasmanian devil	MODERN SPECIES	3	NEGR1 (ENSSHAG00000020827)	ENSSHAG00000008054	ENSSHAG00000029066 #9	CTH (ENSSHAG00000011509) #10	ANKRD13C (ENSSHAG00000011987) #11	SRSF11 (ENSSHAG00000026078) #13	LRRC40 (ENSSHAG00000012381) #14	LRRC7 (ENSSHAG00000012908) #15	ENSSHAG00000016708	DEPDC1 (ENSSHAG00000016831) #17	RPE65 (ENSSHAG00000016895) #18	ENSSHAG00000016940	WLS (ENSSHAG00000017285) #19	ENSSHAG00000024943	GADD45A (ENSSHAG00000031870) #21	SERBP1 (ENSSHAG00000026754) #22	ENSSHAG00000007683 #23	ENSSHAG00000006594 #25	ENSSHAG00000024280	SLC35D1 (ENSSHAG00000020598) #27	MIER1 (ENSSHAG00000021949) #29	DNAI4 (ENSSHAG00000001312) #30	ENSSHAG00000003559	DYNLT5 (ENSSHAG00000022608) #32	SGIP1 (ENSSHAG00000004465) #33	PDE4B (ENSSHAG00000002088) #34	ENSSHAG00000026231	LEPR (ENSSHAG00000010527) #35	ENSSHAG00000021124 #36	DNAJC6 (ENSSHAG00000011701) #37	ENSSHAG00000012804
Platypus	MODERN SPECIES	9	KCNIP4 (ENSOANG00000006672)	ENSOANG00000006671	SLIT2 (ENSOANG00000006668)	ENSOANG00000006667	NCAPG (ENSOANG00000006664)	ENSOANG00000006663	MED28 (ENSOANG00000047599)	LAP3 (ENSOANG00000006661)	CLRN2 (ENSOANG00000039129)	DEPDC1 (ENSOANG00000006658) #17	RPE65 (ENSOANG00000006656) #18	WLS (ENSOANG00000007764) #19	DIRAS2 (ENSOANG00000042492)	GNG12 (ENSOANG00000049237)	ENSOANG00000007766 #21	SERBP1 (ENSOANG00000007767) #22	ENSOANG00000007768 #23	ENSOANG00000007769 #25	ENSOANG00000028430	SLC35D1 (ENSOANG00000041668) #27	MIER1 (ENSOANG00000012768) #29	DNAI4 (ENSOANG00000007145) #30	DYNLT5 (ENSOANG00000047513) #32	ENSOANG00000006856 #33	PDE4B (ENSOANG00000037786) #34	ENSOANG00000000396 #35	LEPROT (ENSOANG00000002459) #36	DNAJC6 (ENSOANG00000044288) #37	ENSOANG00000009019	JAK1 (ENSOANG00000042832)	RAVER2 (ENSOANG00000008327)
Sauria	ANCESTRAL SPECIES	7	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b.d #13	ENSGT00910000148470	ENSGT00730000110872.b.c #13	ENSGT00940000156968 #14	ENSGT00960000186843	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00940000164186.a	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092
Lepidosauria	ANCESTRAL SPECIES	11	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b.c #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00940000164186.a	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092
Episquamata	ANCESTRAL SPECIES	1	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b.c #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00940000164186.a	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092
Toxicofera	ANCESTRAL SPECIES	1	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b.c #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00940000164186.a	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT01030000236550	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092
Elapidae	ANCESTRAL SPECIES	1	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00940000162903.f.f.a	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b.c #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00940000164186.a	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT01030000236550	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092
Indian cobra	MODERN SPECIES	2	PTGER3 (ENSNNAG00000000759) #9	ENSNNAG00000000739	CTH (ENSNNAG00000000711) #10	ENSNNAG00000000687	ANKRD13C (ENSNNAG00000018083) #11	SRSF11 (ENSNNAG00000018081) #13	LRRC40 (ENSNNAG00000018063) #14	LRRC7 (ENSNNAG00000017992) #15	DEPDC1 (ENSNNAG00000017965) #17	RPE65 (ENSNNAG00000017920) #18	ENSNNAG00000017913	WLS (ENSNNAG00000017910) #19	ENSNNAG00000017909	GNG12 (ENSNNAG00000017908)	GADD45A (ENSNNAG00000017907) #21	SERBP1 (ENSNNAG00000017906) #22	ENSNNAG00000017905 #23	ENSNNAG00000017903 #25	SLC35D1 (ENSNNAG00000017902) #27	MIER1 (ENSNNAG00000017900) #29	DNAI4 (ENSNNAG00000017898) #30	ENSNNAG00000017897	DYNLT5 (ENSNNAG00000017896) #32	SGIP1 (ENSNNAG00000017887) #33	PDE4B (ENSNNAG00000017882) #34	ENSNNAG00000017880	LEPR (ENSNNAG00000017874) #35	LEPROT (ENSNNAG00000017872) #36	DNAJC6 (ENSNNAG00000017647) #37	ENSNNAG00000017594	ENSNNAG00000017585
Elapidae_a	ANCESTRAL SPECIES	7	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00940000162903.f.f.a	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b.d #13	ENSGT00940000156968.g #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00940000164186.a	ENSGT00390000005897 #19	ENSGT00940000158196.`b.a	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT01030000236550	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648
Acanthophiinae	ANCESTRAL SPECIES	5	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00940000162903.f.f.a	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b.d #13	ENSGT00940000156968.g #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00940000164186.a	ENSGT00390000005897 #19	ENSGT00940000158196.`b.a	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT01030000236550	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648
Eastern brown snake	MODERN SPECIES	13	ZRANB2 (ENSPTXG00000006508) #8	PTGER3 (ENSPTXG00000006507) #9	CTH (ENSPTXG00000006506) #10	ENSPTXG00000006504	ANKRD13C (ENSPTXG00000006503) #11	SRSF11 (ENSPTXG00000006502) #13	ENSPTXG00000006501 #14	LRRC7 (ENSPTXG00000006477) #15	DEPDC1 (ENSPTXG00000006476) #17	RPE65 (ENSPTXG00000006475) #18	ENSPTXG00000006474	WLS (ENSPTXG00000006473) #19	ENSPTXG00000006472	GNG12 (ENSPTXG00000006471)	GADD45A (ENSPTXG00000006470) #21	SERBP1 (ENSPTXG00000006469) #22	IL23R (ENSPTXG00000006468) #25	SLC35D1 (ENSPTXG00000006467) #27	MIER1 (ENSPTXG00000006465) #29	DNAI4 (ENSPTXG00000006463) #30	ENSPTXG00000006462	DYNLT5 (ENSPTXG00000006461) #32	SGIP1 (ENSPTXG00000006460) #33	PDE4B (ENSPTXG00000005764) #34
Mainland tiger snake	MODERN SPECIES	13							LRRC40 (ENSNSUG00000003611) #14	LRRC7 (ENSNSUG00000003590) #15	DEPDC1 (ENSNSUG00000003580) #17	RPE65 (ENSNSUG00000003575) #18	ENSNSUG00000003568	WLS (ENSNSUG00000003556) #19	ENSNSUG00000003548	GNG12 (ENSNSUG00000003545)	GADD45A (ENSNSUG00000003540) #21	SERBP1 (ENSNSUG00000003529) #22	ENSNSUG00000003522 #23	IL23R (ENSNSUG00000003518) #25	SLC35D1 (ENSNSUG00000003478) #27	MIER1 (ENSNSUG00000003472) #29	DNAI4 (ENSNSUG00000003467) #30	ENSNSUG00000003463	DYNLT5 (ENSNSUG00000003455) #32	SGIP1 (ENSNSUG00000003440) #33	ENSNSUG00000003431 #34	ENSNSUG00000003430 #34	ENSNSUG00000003428 #35	ENSNSUG00000003427	LEPROT (ENSNSUG00000003416) #36	DNAJC6 (ENSNSUG00000003207) #37	ENSNSUG00000003203
Blue-lipped sea krait	MODERN SPECIES	332																SERBP1 (ENSLLTG00000000414) #22	ENSLLTG00000000464 #23
Laterata	DUPLICATION
Laterata	ANCESTRAL SPECIES	3	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b.c #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00940000164186.a	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a.e #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092
Common wall lizard	MODERN SPECIES	14	NEGR1 (ENSPMRG00000010238)	ENSPMRG00000010246	ZRANB2 (ENSPMRG00000010249) #8	PTGER3 (ENSPMRG00000010253) #9	CTH (ENSPMRG00000010257) #10	ANKRD13C (ENSPMRG00000010264) #11	SRSF11 (ENSPMRG00000010271) #13	LRRC40 (ENSPMRG00000010276) #14	LRRC7 (ENSPMRG00000010305) #15	RPE65 (ENSPMRG00000010368) #18	ENSPMRG00000010374	WLS (ENSPMRG00000010394) #19	ENSPMRG00000010420	GNG12 (ENSPMRG00000010424)	GADD45A (ENSPMRG00000010434) #21	SERBP1 (ENSPMRG00000010448) #22	ENSPMRG00000010456 #23	ENSPMRG00000010463 #25	SLC35D1 (ENSPMRG00000010473) #27	MIER1 (ENSPMRG00000010482) #29	DNAI4 (ENSPMRG00000010489) #30	ENSPMRG00000010509	DYNLT5 (ENSPMRG00000010514) #32	SGIP1 (ENSPMRG00000010549) #33	PDE4B (ENSPMRG00000010762) #34	LEPR (ENSPMRG00000010834) #35	LEPROT (ENSPMRG00000011032) #36	ENSPMRG00000011038	DNAJC6 (ENSPMRG00000011049) #37	ENSPMRG00000011079	JAK1 (ENSPMRG00000011088)
Argentine black and white tegu	MODERN SPECIES	31	NEGR1 (ENSSMRG00000020096)	ZRANB2 (ENSSMRG00000020094) #8	PTGER3 (ENSSMRG00000020093) #9	CTH (ENSSMRG00000020092) #10	ANKRD13C (ENSSMRG00000020091) #11	SRSF11 (ENSSMRG00000020090) #13	LRRC40 (ENSSMRG00000020088) #14	LRRC7 (ENSSMRG00000020087) #15	DEPDC1 (ENSSMRG00000020085) #17	RPE65 (ENSSMRG00000019976) #18	ENSSMRG00000019975	WLS (ENSSMRG00000019974) #19	ENSSMRG00000019973	GNG12 (ENSSMRG00000019972)	GADD45A (ENSSMRG00000019971) #21	ENSSMRG00000019970 #22	ENSSMRG00000019969 #23	IL23R (ENSSMRG00000019968) #25	SLC35D1 (ENSSMRG00000019967) #27	MIER1 (ENSSMRG00000019966) #29	DNAI4 (ENSSMRG00000019965) #30	INSL5 (ENSSMRG00000019962) #31	DYNLT5 (ENSSMRG00000019961) #32	SGIP1 (ENSSMRG00000019959) #33	PDE4B (ENSSMRG00000019958) #34	ENSSMRG00000019957	LEPR (ENSSMRG00000019956) #35	LEPROT (ENSSMRG00000019955) #36	DNAJC6 (ENSSMRG00000019954) #37	ENSSMRG00000019953	JAK1 (ENSSMRG00000018281)
Laterata	ANCESTRAL SPECIES																	ENSGT00520000055591.a.f #22
Argentine black and white tegu	MODERN SPECIES	34	ENSSMRG00000016552	MAPK4 (ENSSMRG00000016550)	ME2 (ENSSMRG00000016542)	ELAC1 (ENSSMRG00000016541)	SMAD4 (ENSSMRG00000016533)	MEX3C (ENSSMRG00000016531)	ENSSMRG00000016529	DCC (ENSSMRG00000016526)	MBD2 (ENSSMRG00000016511)	POLI (ENSSMRG00000016509)	ENSSMRG00000016508	STARD6 (ENSSMRG00000016506)	C18orf54 (ENSSMRG00000016505)	RAB27B (ENSSMRG00000016503)	CCDC68 (ENSSMRG00000016500)	ENSSMRG00000016495 #22	TCF4 (ENSSMRG00000016480)	ENSSMRG00000016478	TXNL1 (ENSSMRG00000016477)	WDR7 (ENSSMRG00000016474)	ENSSMRG00000016473	ST8SIA3 (ENSSMRG00000016471)	ONECUT2 (ENSSMRG00000016470)	FECH (ENSSMRG00000016469)	NARS1 (ENSSMRG00000016468)	ATP8B1 (ENSSMRG00000016466)	NEDD4L (ENSSMRG00000016457)	MALT1 (ENSSMRG00000016446)	ZNF532 (ENSSMRG00000016445)	SEC11C (ENSSMRG00000016444)	GRP (ENSSMRG00000016442)
Archelosauria	ANCESTRAL SPECIES	9	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b.d #13	ENSGT00910000148470	ENSGT00730000110872.b.c #13	ENSGT00940000156968 #14	ENSGT00960000186843	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00940000164186.a	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092
Archosauria	ANCESTRAL SPECIES	11	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b.c #13	ENSGT00910000148470	ENSGT00730000110872.b.d #13	ENSGT00940000156968 #14	ENSGT00960000186843	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00940000164186.a	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092
Aves	ANCESTRAL SPECIES	7	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b.d #13	ENSGT00910000148470	ENSGT00730000110872.b.c #13	ENSGT00940000156968 #14	ENSGT00960000186843	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00940000164186.a	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092
Neognathae	ANCESTRAL SPECIES	8	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b.d #13	ENSGT00910000148470	ENSGT00730000110872.b.c #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00940000164186.a	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092
Galloanserae	ANCESTRAL SPECIES	8	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00910000148470	ENSGT00730000110872.b.c #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00940000164186.a	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00940000160050.l	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092
Phasianidae	ANCESTRAL SPECIES	7	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00910000148470	ENSGT00730000110872.b.c #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00940000164186.a	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00940000160050.l	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092.e
Phasianidae_b	ANCESTRAL SPECIES	7	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00910000148470	ENSGT00730000110872.b.c #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00940000164186.a	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00940000160050.l	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00990000204555	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092.e
Chicken	MODERN SPECIES	37	ENSGALG00010023958	NEGR1 (ENSGALG00010023942)	ZRANB2 (ENSGALG00010023917) #8	PTGER3 (ENSGALG00010023902) #9	CTH (ENSGALG00010023888) #10	ANKRD13C (ENSGALG00010023704) #11	SRSF11 (ENSGALG00010023693) #13	LRRC40 (ENSGALG00010023641) #14	LRRC7 (ENSGALG00010023606) #15	DEPDC1 (ENSGALG00010023574) #17	RPE65 (ENSGALG00010023506) #18	MCCC2L (ENSGALG00010023479)	WLS (ENSGALG00010023422) #19	GNG12 (ENSGALG00010023389)	GADD45A (ENSGALG00010023362) #21	SERBP1 (ENSGALG00010023282) #22	IL12RB2 (ENSGALG00010023249) #23	ENSGALG00010023235	SLC35D1 (ENSGALG00010023216) #27	MIER1 (ENSGALG00010023186) #29	DNAI4 (ENSGALG00010023145) #30	DYNLT5 (ENSGALG00010023130) #32	SGIP1 (ENSGALG00010022848) #33	PDE4B (ENSGALG00010027081) #34	ENSGALG00010024171	LEPR (ENSGALG00010024165) #35	LEPROT (ENSGALG00010024151) #36	DNAJC6 (ENSGALG00010024142) #37	ENSGALG00010024132	JAK1 (ENSGALG00010024493)	RAVER2 (ENSGALG00010024473)
Turkey	MODERN SPECIES	1	ENSMGAG00000022771	ENSMGAG00000011832	LEPROT (ENSMGAG00000011858) #36	ENSMGAG00000011841 #37	LEPR (ENSMGAG00000011860) #35	ENSMGAG00000020412 #34	ENSMGAG00000011887 #34	SGIP1 (ENSMGAG00000011892) #33	ENSMGAG00000011919 #30	ENSMGAG00000018497	ENSMGAG00000020952 #32	ENSMGAG00000018019 #30	ENSMGAG00000011946 #27	ENSMGAG00000011935 #29	IL12RB2 (ENSMGAG00000011967) #23	SERBP1 (ENSMGAG00000011975) #22	ENSMGAG00000011997	ENSMGAG00000011990 #21	WLS (ENSMGAG00000011999) #19	ENSMGAG00000012017 #18	ENSMGAG00000012008	DEPDC1 (ENSMGAG00000012027) #17	ENSMGAG00000012059 #14	ENSMGAG00000012039 #15	ENSMGAG00000020025 #14	ENSMGAG00000012091 #11	ENSMGAG00000017585	ENSMGAG00000012072 #13	CTH (ENSMGAG00000012103) #10	ENSMGAG00000012116	ENSMGAG00000012121
Japanese quail	MODERN SPECIES	26	NEGR1 (ENSCJPG00005014529)	ZRANB2 (ENSCJPG00005014528) #8	PTGER3 (ENSCJPG00005014527) #9	CTH (ENSCJPG00005014526) #10	ANKRD13C (ENSCJPG00005014525) #11	ENSCJPG00005014524	SRSF11 (ENSCJPG00005014523) #13	LRRC40 (ENSCJPG00005014522) #14	LRRC7 (ENSCJPG00005014521) #15	DEPDC1 (ENSCJPG00005014520) #17	RPE65 (ENSCJPG00005014519) #18	ENSCJPG00005014518	WLS (ENSCJPG00005014517) #19	GNG12 (ENSCJPG00005014515)	GADD45A (ENSCJPG00005014514) #21	SERBP1 (ENSCJPG00005014513) #22	ENSCJPG00005014511	IL12RB2 (ENSCJPG00005014510) #23	SLC35D1 (ENSCJPG00005014509) #27	MIER1 (ENSCJPG00005014508) #29	DNAI4 (ENSCJPG00005014507) #30	ENSCJPG00005014506 #31	DYNLT5 (ENSCJPG00005014505) #32	SGIP1 (ENSCJPG00005014504) #33	PDE4B (ENSCJPG00005014503) #34	LEPR (ENSCJPG00005014502) #35	LEPROT (ENSCJPG00005014501) #36	DNAJC6 (ENSCJPG00005014500) #37	ENSCJPG00005014499	ENSCJPG00005014497	JAK1 (ENSCJPG00005014496)
Anatidae	ANCESTRAL SPECIES	5	ENSGT00940000159131	ENSGT00780000122095	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b.c #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00940000164186.a	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00940000160050.l	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000160185 #32	ENSGT00940000156301.g #33	ENSGT00940000156301.h #33	ENSGT00940000155190 #34	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648
Duck	MODERN SPECIES	26	ENSAPLG00000027128	NEGR1 (ENSAPLG00000011651)	ZRANB2 (ENSAPLG00000011345) #8	PTGER3 (ENSAPLG00000019095) #9	CTH (ENSAPLG00000010832) #10	ANKRD13C (ENSAPLG00000010438) #11	SRSF11 (ENSAPLG00000010241) #13	LRRC40 (ENSAPLG00000009971) #14	LRRC7 (ENSAPLG00000009688) #15	DEPDC1 (ENSAPLG00000002417) #17	RPE65 (ENSAPLG00000015511) #18	ENSAPLG00000015331	WLS (ENSAPLG00000014906) #19	ENSAPLG00000025200	GNG12 (ENSAPLG00000022574)	SERBP1 (ENSAPLG00000023710) #22	IL12RB2 (ENSAPLG00000008716) #23	MIER1 (ENSAPLG00000008492) #29	DNAI4 (ENSAPLG00000008177) #30	ENSAPLG00000008053	ENSAPLG00000021413 #33	PDE4B (ENSAPLG00000007240) #34	LEPR (ENSAPLG00000015902) #35	LEPROT (ENSAPLG00000029613) #36	DNAJC6 (ENSAPLG00000015954) #37	ENSAPLG00000007058	JAK1 (ENSAPLG00000012047)	RAVER2 (ENSAPLG00000013160)	CACHD1 (ENSAPLG00000013355)	ROR1 (ENSAPLG00000013960)	PGM1 (ENSAPLG00000014087)
Neognathae_b	ANCESTRAL SPECIES	10	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b.c #13	ENSGT00910000148470	ENSGT00730000110872.b.d #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00940000164186.a	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00950000183297	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092
Neognathae_c	ANCESTRAL SPECIES	7	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00910000148470	ENSGT00730000110872.b.c #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00940000164186.a	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00990000204555	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648
Golden eagle	MODERN SPECIES	3	ZRANB2 (ENSACCG00020012561) #8	PTGER3 (ENSACCG00020012543) #9	CTH (ENSACCG00020012509) #10	ANKRD13C (ENSACCG00020012479) #11	ENSACCG00020012455	SRSF11 (ENSACCG00020012425) #13	LRRC40 (ENSACCG00020012379) #14	LRRC7 (ENSACCG00020012302) #15	DEPDC1 (ENSACCG00020012143) #17	RPE65 (ENSACCG00020012097) #18	ENSACCG00020011949	WLS (ENSACCG00020011917) #19	ENSACCG00020011874	GNG12 (ENSACCG00020011821)	GADD45A (ENSACCG00020011721) #21	SERBP1 (ENSACCG00020011670) #22	IL12RB2 (ENSACCG00020011596) #23	IL23R (ENSACCG00020011546) #25	SLC35D1 (ENSACCG00020011522) #27	MIER1 (ENSACCG00020011496) #29	DNAI4 (ENSACCG00020011470) #30	DYNLT5 (ENSACCG00020017054) #32	SGIP1 (ENSACCG00020017053) #33	ENSACCG00020017052 #34	ENSACCG00020017051 #34	LEPR (ENSACCG00020017050) #35	LEPROT (ENSACCG00020017049) #36	DNAJC6 (ENSACCG00020017048) #37	ENSACCG00020017047	JAK1 (ENSACCG00020017045)	RAVER2 (ENSACCG00020017044)
Kakapo	MODERN SPECIES	25	NEGR1 (ENSSHBG00005006353)	ZRANB2 (ENSSHBG00005006322) #8	PTGER3 (ENSSHBG00005006310) #9	CTH (ENSSHBG00005006295) #10	ANKRD13C (ENSSHBG00005006277) #11	SRSF11 (ENSSHBG00005006243) #13	LRRC40 (ENSSHBG00005006229) #14	LRRC7 (ENSSHBG00005005421) #15	DEPDC1 (ENSSHBG00005005262) #17	RPE65 (ENSSHBG00005005243) #18	ENSSHBG00005005218	WLS (ENSSHBG00005000693) #19	ENSSHBG00005015678	GNG12 (ENSSHBG00005015675)	GADD45A (ENSSHBG00005015670) #21	SERBP1 (ENSSHBG00005015665) #22	ENSSHBG00005015653 #23	IL23R (ENSSHBG00005015646) #25	SLC35D1 (ENSSHBG00005015635) #27	MIER1 (ENSSHBG00005015551) #29	ENSSHBG00005015538 #30	ENSSHBG00005015535 #30	ENSSHBG00005015532	DYNLT5 (ENSSHBG00005015529) #32	SGIP1 (ENSSHBG00005015507) #33	ENSSHBG00005015495 #34	ENSSHBG00005015488 #34	LEPR (ENSSHBG00005015452) #35	LEPROT (ENSSHBG00005015439) #36	DNAJC6 (ENSSHBG00005015435) #37	ENSSHBG00005015430
Passeriformes	ANCESTRAL SPECIES	8	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b.c #13	ENSGT00910000148470	ENSGT00730000110872.b.d #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00940000164186.a	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00950000183297	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092
Great tit	MODERN SPECIES	28	NEGR1 (ENSPMJG00000013053)	ENSPMJG00000013051	PTGER3 (ENSPMJG00000013049) #9	LRRC7 (ENSPMJG00000012697) #15	LRRC40 (ENSPMJG00000012696) #14	ENSPMJG00000012695	SRSF11 (ENSPMJG00000012694) #13	ANKRD13C (ENSPMJG00000012634) #11	DEPDC1 (ENSPMJG00000012631) #17	RPE65 (ENSPMJG00000012367) #18	ENSPMJG00000012366	WLS (ENSPMJG00000012364) #19	ENSPMJG00000012363	GNG12 (ENSPMJG00000012362)	GADD45A (ENSPMJG00000012361) #21	SERBP1 (ENSPMJG00000012358) #22	ENSPMJG00000012357	ENSPMJG00000012356 #25	SLC35D1 (ENSPMJG00000012355) #27	MIER1 (ENSPMJG00000012354) #29	DNAI4 (ENSPMJG00000012353) #30	ENSPMJG00000012352 #31	DYNLT5 (ENSPMJG00000012351) #32	SGIP1 (ENSPMJG00000012350) #33	PDE4B (ENSPMJG00000012349) #34	LEPR (ENSPMJG00000012348) #35	LEPROT (ENSPMJG00000012347) #36	DNAJC6 (ENSPMJG00000012346) #37	ENSPMJG00000012345	JAK1 (ENSPMJG00000012343)	RAVER2 (ENSPMJG00000012342)
Passeriformes_d	DUPLICATION
Passeriformes_d	DUPLICATION
Passeriformes_d	ANCESTRAL SPECIES																	ENSGT00520000055591.a.g.a #22
Passeriformes_g	ANCESTRAL SPECIES																	ENSGT00520000055591.a.g.a #22
Passeroidea	ANCESTRAL SPECIES																	ENSGT00520000055591.a.g.a #22
Zebra finch	MODERN SPECIES	30	ENSTGUG00000018848	ENSTGUG00000022692	ENSTGUG00000028165 #8	ENSTGUG00000024427 #9	ENSTGUG00000010330 #15	ENSTGUG00000010302 #14	ENSTGUG00000010284 #13	ENSTGUG00000010275 #11	ENSTGUG00000028389 #10	ENSTGUG00000019510 #17	ENSTGUG00000022521	ENSTGUG00000010207 #19	DIRAS3 (ENSTGUG00000028200)	GNG12 (ENSTGUG00000020206)	ENSTGUG00000021186 #21	ENSTGUG00000010185 #22	ENSTGUG00000024753 #23	ENSTGUG00000027540 #25	ENSTGUG00000010140 #27	ENSTGUG00000027609 #29	ENSTGUG00000010161 #30	ENSTGUG00000021010	ENSTGUG00000010158 #32	ENSTGUG00000020480 #34	ENSTGUG00000010106 #33	ENSTGUG00000021083 #35	ENSTGUG00000029515 #36	ENSTGUG00000010011 #37	ENSTGUG00000010010	ENSTGUG00000029078	ENSTGUG00000009973
Flycatcher	MODERN SPECIES	27	ENSFALG00000023525	NEGR1 (ENSFALG00000001249)	ZRANB2 (ENSFALG00000001242) #8	ENSFALG00000023205 #10	LRRC7 (ENSFALG00000001237) #15	LRRC40 (ENSFALG00000001226) #14	SRSF11 (ENSFALG00000001217) #13	ANKRD13C (ENSFALG00000028454) #11	ENSFALG00000013034 #10	DEPDC1 (ENSFALG00000013009) #17	RPE65 (ENSFALG00000012996) #18	ENSFALG00000012976	WLS (ENSFALG00000012942) #19	ENSFALG00000023313	GNG12 (ENSFALG00000012927)	SERBP1 (ENSFALG00000028513) #22	ENSFALG00000020272	SLC35D1 (ENSFALG00000012853) #27	MIER1 (ENSFALG00000012825) #29	DNAI4 (ENSFALG00000012813) #30	ENSFALG00000014310 #31	SGIP1 (ENSFALG00000012810) #33	ENSFALG00000012778 #34	ENSFALG00000028654 #34	ENSFALG00000025173	LEPR (ENSFALG00000012729) #35	LEPROT (ENSFALG00000012714) #36	ENSFALG00000024596	DNAJC6 (ENSFALG00000012679) #37	ENSFALG00000027823	JAK1 (ENSFALG00000012645)
Passeriformes_d	ANCESTRAL SPECIES	9	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b.d #13	ENSGT00910000148470	ENSGT00730000110872.b.c #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00940000164186.a	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a.g.b #22	ENSGT00520000055591.a.h #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00950000183297	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568.f
Passeriformes_g	ANCESTRAL SPECIES	10	ENSGT01030000234559.b #9	ENSGT00390000000312.q #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b.d #13	ENSGT00910000148470	ENSGT00730000110872.b.c #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00390000000312.r #10	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00940000164186.a	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a.g.b #22	ENSGT00520000055591.a.h #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00990000204555	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568.f
Passeroidea	ANCESTRAL SPECIES	9	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312.q #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b.d #13	ENSGT00910000148470	ENSGT00730000110872.b.c #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00940000164186.a	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a.g.b #22	ENSGT00520000055591.a.h #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00990000204555	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755.o #37	ENSGT00940000154568.f
Zebra finch	MODERN SPECIES	30	ENSTGUG00000010364	ENSTGUG00000022821 #8	ENSTGUG00000025601 #9	ENSTGUG00000019662 #15	ENSTGUG00000026580 #14	SRSF11 (ENSTGUG00000026513) #13	ENSTGUG00000026570 #11	ENSTGUG00000010266 #10	ENSTGUG00000010258 #17	RPE65 (ENSTGUG00000010240) #18	ENSTGUG00000010227	ENSTGUG00000018956 #19	DIRAS3 (ENSTGUG00000026090)	ENSTGUG00000028084	ENSTGUG00000021708 #21	ENSTGUG00000022830 #22	ENSTGUG00000022177 #23	ENSTGUG00000025177 #27	ENSTGUG00000027339 #29	ENSTGUG00000021508 #30	ENSTGUG00000010160	ENSTGUG00000029074 #32	ENSTGUG00000025877 #33	ENSTGUG00000010065 #34	ENSTGUG00000019287	LEPR (ENSTGUG00000010030) #35	ENSTGUG00000025994 #36	DNAJC6 (ENSTGUG00000025462) #37	ENSTGUG00000019255	ENSTGUG00000024368	ENSTGUG00000019856
Passeriformes_d	ANCESTRAL SPECIES	9	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b.d #13	ENSGT00910000148470	ENSGT00730000110872.b.c #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00940000164186.a	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a.g.b #22	ENSGT00520000055591.a.h #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00950000183297	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568.f	ENSGT00940000157092
Passeriformes_g	ANCESTRAL SPECIES	10	ENSGT00390000000312.q #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b.d #13	ENSGT00910000148470	ENSGT00730000110872.b.c #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00390000000312.r #10	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00940000164186.a	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a.g.b #22	ENSGT00520000055591.a.h #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00990000204555	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568.f	ENSGT00940000154568.e
Passeroidea	ANCESTRAL SPECIES	9	ENSGT01030000234559.b #9	ENSGT00390000000312.q #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b.d #13	ENSGT00910000148470	ENSGT00730000110872.b.c #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00940000164186.a	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a.g.b #22	ENSGT00520000055591.a.h #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00990000204555	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755.o #37	ENSGT00940000154568.f	ENSGT00940000154568.e
Common canary	MODERN SPECIES	9	ENSSCAG00000008038	ZRANB2 (ENSSCAG00000008035) #8	CTH (ENSSCAG00000007952) #10	ANKRD13C (ENSSCAG00000007923) #11	ENSSCAG00000007914	SRSF11 (ENSSCAG00000007908) #13	LRRC40 (ENSSCAG00000007651) #14	LRRC7 (ENSSCAG00000007607) #15	ENSSCAG00000007605 #18	DEPDC1 (ENSSCAG00000007602) #17	ENSSCAG00000007598	ENSSCAG00000007591	WLS (ENSSCAG00000007589) #19	ENSSCAG00000007587	GNG12 (ENSSCAG00000007586)	SERBP1 (ENSSCAG00000007585) #22	ENSSCAG00000007581 #23	SLC35D1 (ENSSCAG00000007571) #27	MIER1 (ENSSCAG00000007527) #29	ENSSCAG00000007520	ENSSCAG00000007516 #31	DYNLT5 (ENSSCAG00000007509) #32	SGIP1 (ENSSCAG00000007499) #33	PDE4B (ENSSCAG00000007072) #34	LEPR (ENSSCAG00000007012) #35	ENSSCAG00000007007	LEPROT (ENSSCAG00000007003) #36	DNAJC6 (ENSSCAG00000006996) #37	ENSSCAG00000006982	ROR1 (ENSSCAG00000006973)	ENSSCAG00000006966
Medium ground finch	MODERN SPECIES	255					ENSGFOG00000003031	LRRC40 (ENSGFOG00000002823) #14	SRSF11 (ENSGFOG00000002786) #13	ANKRD13C (ENSGFOG00000002747) #11	ENSGFOG00000002560 #10	DEPDC1 (ENSGFOG00000002468) #17	RPE65 (ENSGFOG00000014807) #18	ENSGFOG00000014806	WLS (ENSGFOG00000014805) #19	ENSGFOG00000014804	GNG12 (ENSGFOG00000014803)	SERBP1 (ENSGFOG00000014802) #22	ENSGFOG00000014800 #23	SLC35D1 (ENSGFOG00000014799) #27	MIER1 (ENSGFOG00000014798) #29	DNAI4 (ENSGFOG00000014797) #30	ENSGFOG00000014796	DYNLT5 (ENSGFOG00000014795) #32	SGIP1 (ENSGFOG00000014794) #33	PDE4B (ENSGFOG00000014783) #34	LEPR (ENSGFOG00000014775) #35	LEPROT (ENSGFOG00000014770) #36	DNAJC6 (ENSGFOG00000014768) #37	ENSGFOG00000014767
African ostrich	MODERN SPECIES	220	ENSSCUG00000004285	PTGER3 (ENSSCUG00000004284) #9	CTH (ENSSCUG00000004282) #10	ANKRD13C (ENSSCUG00000004280) #11	SRSF11 (ENSSCUG00000004279) #13	LRRC40 (ENSSCUG00000004277) #14	ENSSCUG00000004276	LRRC7 (ENSSCUG00000004275) #15	DEPDC1 (ENSSCUG00000004271) #17	RPE65 (ENSSCUG00000004270) #18	ENSSCUG00000004269	ENSSCUG00000004267 #19	ENSSCUG00000004266 #19	ENSSCUG00000004265	GNG12 (ENSSCUG00000004262)	SERBP1 (ENSSCUG00000004259) #22	IL12RB2 (ENSSCUG00000004258) #23	SLC35D1 (ENSSCUG00000004256) #27	MIER1 (ENSSCUG00000004254) #29	DNAI4 (ENSSCUG00000004248) #30	ENSSCUG00000004247 #31	ENSSCUG00000004241	PDE4B (ENSSCUG00000004240) #34	ENSSCUG00000004237	LEPR (ENSSCUG00000004230) #35	LEPROT (ENSSCUG00000004226) #36	DNAJC6 (ENSSCUG00000004221) #37	JAK1 (ENSSCUG00000004212)	RAVER2 (ENSSCUG00000004209)	CACHD1 (ENSSCUG00000004203)	UBE2U (ENSSCUG00000004193)
Australian saltwater crocodile	MODERN SPECIES	28	PTGER3 (ENSCPRG00005012835) #9	CTH (ENSCPRG00005012796) #10	ANKRD13C (ENSCPRG00005012782) #11	SRSF11 (ENSCPRG00005012756) #13	LRRC40 (ENSCPRG00005012320) #14	LRRC7 (ENSCPRG00005011919) #15	DEPDC1 (ENSCPRG00005011831) #17	RPE65 (ENSCPRG00005011721) #18	ENSCPRG00005011710	WLS (ENSCPRG00005011645) #19	ENSCPRG00005011639	ENSCPRG00005011633	ENSCPRG00005011630	GNG12 (ENSCPRG00005011605)	GADD45A (ENSCPRG00005011603) #21	SERBP1 (ENSCPRG00005011598) #22	IL12RB2 (ENSCPRG00005011590) #23	IL23R (ENSCPRG00005011584) #25	SLC35D1 (ENSCPRG00005011523) #27	MIER1 (ENSCPRG00005011341) #29	DNAI4 (ENSCPRG00005011316) #30	ENSCPRG00005011307 #31	DYNLT5 (ENSCPRG00005011304) #32	SGIP1 (ENSCPRG00005011289) #33	PDE4B (ENSCPRG00005011137) #34	ENSCPRG00005011105	LEPR (ENSCPRG00005011098) #35	LEPROT (ENSCPRG00005011093) #36	DNAJC6 (ENSCPRG00005011081) #37	ENSCPRG00005011074	JAK1 (ENSCPRG00005011063)
Cryptodira	ANCESTRAL SPECIES	8	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b.d #13	ENSGT00910000148470	ENSGT00730000110872.b.c #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00940000164186.a	ENSGT00390000005897.c #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092
Testudinoidea	ANCESTRAL SPECIES	5	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b.c.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00940000164186.a	ENSGT00390000005897.c #19	ENSGT00390000005897.d #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190.m.a #34	ENSGT00950000183297	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568
Testudinidae	ANCESTRAL SPECIES	41	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b.d #13	ENSGT00910000148470	ENSGT00730000110872.b.c.a #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00940000164186.a	ENSGT00390000005897.c #19	ENSGT00390000005897.d #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00940000154396.b.a ##31	ENSGT01050000244879.a.b	ENSGT00390000011987	ENSGT00940000162059	ENSGT00390000009595.b	ENSGT00950000183135.A.b	ENSGT00940000162102	ENSGT00390000011740	ENSGT00390000013732	ENSGT00530000063615.b	ENSGT00940000156518.C	ENSGT00900000141021.b.b.d	ENSGT00940000163101	ENSGT00940000159327
Goode s thornscrub tortoise	MODERN SPECIES	22	ENSGEVG00005004912	CTH (ENSGEVG00005004963) #10	ANKRD13C (ENSGEVG00005005082) #11	SRSF11 (ENSGEVG00005005134) #13	ENSGEVG00005005179 #13	LRRC40 (ENSGEVG00005005209) #14	LRRC7 (ENSGEVG00005005345) #15	DEPDC1 (ENSGEVG00005005637) #17	RPE65 (ENSGEVG00005005697) #18	ENSGEVG00005005750	ENSGEVG00005005805 #19	ENSGEVG00005005866 #19	ENSGEVG00005005887	GNG12 (ENSGEVG00005005904)	GADD45A (ENSGEVG00005005928) #21	SERBP1 (ENSGEVG00005005956) #22	ENSGEVG00005006067 #23	IL23R (ENSGEVG00005006310) #25	SLC35D1 (ENSGEVG00005006506) #27	MIER1 (ENSGEVG00005006531) #29	DNAI4 (ENSGEVG00005006591) #30	ENSGEVG00005006742 #31	DYNLT5 (ENSGEVG00005006764) #32	SGIP1 (ENSGEVG00005006796) #33	ENSGEVG00005006876 #34	ENSGEVG00005006928 #34	ENSGEVG00005006958	LEPR (ENSGEVG00005007099) #35	LEPROT (ENSGEVG00005007695) #36	DNAJC6 (ENSGEVG00005008265) #37	ENSGEVG00005011475
Abingdon island giant tortoise	MODERN SPECIES	2857								DEPDC1 (ENSCABG00000002575) #17	RPE65 (ENSCABG00000002577) #18	ENSCABG00000002578	ENSCABG00000002579 #19	ENSCABG00000002581 #19	ENSCABG00000002582	GNG12 (ENSCABG00000002584)	GADD45A (ENSCABG00000002585) #21	SERBP1 (ENSCABG00000002589) #22	ENSCABG00000002591 #23	IL23R (ENSCABG00000002595) #25	SLC35D1 (ENSCABG00000002597) #27	MIER1 (ENSCABG00000002716) #29	DNAI4 (ENSCABG00000002719) #30	ENSCABG00000002727	DYNLT5 (ENSCABG00000002729) #32	SGIP1 (ENSCABG00000002732) #33	ENSCABG00000002739 #34	ENSCABG00000002744 #34	ENSCABG00000002748	ENSCABG00000002751	LEPR (ENSCABG00000002772) #35	ENSCABG00000003751	EDAR (ENSCABG00000003754)
Emydidae	ANCESTRAL SPECIES	22	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b.c.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00940000164186.a	ENSGT00390000005897.c #19	ENSGT00390000005897.d #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00530000064198 #25	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190.m.a #34	ENSGT00950000183297	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	97	ENSTMTG00000017554 #8	ENSTMTG00000017584 #9	ENSTMTG00000017599 #10	ENSTMTG00000017623 #11	ENSTMTG00000017697 #13	ENSTMTG00000017719 #14	ENSTMTG00000017770 #15	ENSTMTG00000018021 #17	ENSTMTG00000018043 #18	ENSTMTG00000018066	ENSTMTG00000018084 #19	ENSTMTG00000018147 #19	ENSTMTG00000018157	ENSTMTG00000018159	ENSTMTG00000018165 #21	ENSTMTG00000018169 #22	ENSTMTG00000018185 #23	ENSTMTG00000018248 #25	ENSTMTG00000018319 #27	ENSTMTG00000018339 #29	ENSTMTG00000018360 #30	ENSTMTG00000018437 #31	ENSTMTG00000018459 #32	ENSTMTG00000018482 #33	ENSTMTG00000018590 #34	ENSTMTG00000019383	ENSTMTG00000019457 #35	ENSTMTG00000020147 #36	ENSTMTG00000020247 #37	ENSTMTG00000021372	ENSTMTG00000021386
Three-toed box turtle	MODERN SPECIES	98	ENSTMTG00000008993 #9	ENSTMTG00000009000 #10	ENSTMTG00000009038 #11	SRSF11 (ENSTMTG00000009061) #13	ENSTMTG00000009091 #13	ENSTMTG00000009112 #14	ENSTMTG00000009190 #15	ENSTMTG00000009545 #17	ENSTMTG00000009586 #18	ENSTMTG00000009639	ENSTMTG00000009688 #19	ENSTMTG00000009792 #19	ENSTMTG00000009811	ENSTMTG00000009824	ENSTMTG00000009844 #21	ENSTMTG00000009876 #22	ENSTMTG00000009954 #23	ENSTMTG00000010078 #25	ENSTMTG00000010362 #27	ENSTMTG00000010406 #29	ENSTMTG00000010442 #30	ENSTMTG00000010523 #31	ENSTMTG00000010570 #32	ENSTMTG00000010614 #33	ENSTMTG00000010706 #34	ENSTMTG00000010870	ENSTMTG00000011103 #35	ENSTMTG00000012656 #36	ENSTMTG00000013045 #37	ENSTMTG00000016067	ENSTMTG00000016096
painted turtle	MODERN SPECIES	17	ATG12 (ENSCPBG00000001689)	CDO1 (ENSCPBG00000001681)	TMED7 (ENSCPBG00000001673)	ENSCPBG00000001671	FEM1C (ENSCPBG00000001666)	CCDC112 (ENSCPBG00000001651)	PGGT1B (ENSCPBG00000001628)	TRIM36 (ENSCPBG00000001598)	DEPDC1 (ENSCPBG00000001578) #17	RPE65 (ENSCPBG00000001561) #18	ENSCPBG00000001531	WLS (ENSCPBG00000001513) #19	ENSCPBG00000001504	GADD45A (ENSCPBG00000001491) #21	GNG12 (ENSCPBG00000001480)	SERBP1 (ENSCPBG00000001466) #22	ENSCPBG00000001453 #23	IL23R (ENSCPBG00000001413) #25	SLC35D1 (ENSCPBG00000001385) #27	MIER1 (ENSCPBG00000001361) #29	DNAI4 (ENSCPBG00000001333) #30	ENSCPBG00000001269 #31	DYNLT5 (ENSCPBG00000001257) #32	SGIP1 (ENSCPBG00000001245) #33	PDE4B (ENSCPBG00000001215) #34	ENSCPBG00000001200	ENSCPBG00000001197	LEPR (ENSCPBG00000001180) #35	LEPROT (ENSCPBG00000001162) #36	DNAJC6 (ENSCPBG00000001130) #37	ENSCPBG00000001084
Chinese turtle	MODERN SPECIES	1207											ENSPSIG00000005086	WLS (ENSPSIG00000005221) #19	ENSPSIG00000001275	GNG12 (ENSPSIG00000005891)	GADD45A (ENSPSIG00000005978) #21	SERBP1 (ENSPSIG00000006037) #22	ENSPSIG00000006602 #23	IL23R (ENSPSIG00000006733) #25	SLC35D1 (ENSPSIG00000007252) #27	MIER1 (ENSPSIG00000007513) #29	DNAI4 (ENSPSIG00000007768) #30	DYNLT5 (ENSPSIG00000007842) #32	SGIP1 (ENSPSIG00000007864) #33	PDE4B (ENSPSIG00000008310) #34	ENSPSIG00000001301	ENSPSIG00000008877	LEPR (ENSPSIG00000008884) #35	LEPROT (ENSPSIG00000009219) #36	DNAJC6 (ENSPSIG00000009234) #37	ENSPSIG00000009343	JAK1 (ENSPSIG00000009400)
Anura	ANCESTRAL SPECIES	17	ENSGT00390000004404	ENSGT00940000159289	ENSGT00730000111078 #8	ENSGT01030000234559.b #9	ENSGT00390000000312 #10	ENSGT00950000182928.B.d.b #11	ENSGT00730000110872.b #13	ENSGT00940000156968 #14	ENSGT00940000156262 #15	ENSGT00950000182976.b.a #17	ENSGT00950000182913.B #18	ENSGT00940000164186.a	ENSGT00390000005897 #19	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #21	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648	ENSGT00940000157568
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	11	ENSLLEG00000026691 #11	SRSF11 (ENSLLEG00000026455) #13	LRRC40 (ENSLLEG00000026326) #14	LRRC7 (ENSLLEG00000025641) #15	DEPDC1 (ENSLLEG00000025409) #17	RPE65 (ENSLLEG00000024253) #18	ENSLLEG00000023950	WLS (ENSLLEG00000023556) #19	ENSLLEG00000023508	ENSLLEG00000023487	ENSLLEG00000023467	ENSLLEG00000023451	ENSLLEG00000023374	GADD45A (ENSLLEG00000023325) #21	ENSLLEG00000023300	ENSLLEG00000023073 #22	ENSLLEG00000022915 #23	ENSLLEG00000022648 #23	ENSLLEG00000022555	MIER1 (ENSLLEG00000022252) #29	DNAI4 (ENSLLEG00000021583) #30	INSL5 (ENSLLEG00000021504) #31	DYNLT5 (ENSLLEG00000021465) #32	SGIP1 (ENSLLEG00000021112) #33	ENSLLEG00000021059	PDE4B (ENSLLEG00000020498) #34	ENSLLEG00000020419	ENSLLEG00000020368	LEPR (ENSLLEG00000020168) #35	DNAJC6 (ENSLLEG00000019316) #37	ENSLLEG00000019202
Leishan spiny toad	MODERN SPECIES	4	ENSLLEG00000026962	RCOR1 (ENSLLEG00000026222)	ENSLLEG00000026127	ZBTB25 (ENSLLEG00000026102)	ENSLLEG00000026083	ZBTB1 (ENSLLEG00000026064)	PPP1R36 (ENSLLEG00000026000)	BTBD6 (ENSLLEG00000025797)	BRF1 (ENSLLEG00000025700)	JAG2 (ENSLLEG00000025210)	ENSLLEG00000025171	ENSLLEG00000025152	CDCA4 (ENSLLEG00000025125)	ENSLLEG00000025013	ENSLLEG00000024946	ENSLLEG00000024855 #22	ENSLLEG00000024744	ENSLLEG00000024719	CEP170B (ENSLLEG00000024226)	ENSLLEG00000024133	AKT1 (ENSLLEG00000023684)	ENSLLEG00000023644	SIVA1 (ENSLLEG00000023582)	ADSS1 (ENSLLEG00000022822)	INF2 (ENSLLEG00000022275)	TMEM179 (ENSLLEG00000022154)	ENSLLEG00000022125	ENSLLEG00000022105	ENSLLEG00000022065	KIF26A (ENSLLEG00000021526)	ENSLLEG00000021479
Frog	MODERN SPECIES	4	zranb2 (ENSXETG00000024108) #8	ptger3 (ENSXETG00000011179) #9	cth (ENSXETG00000011183) #10	ankrd13c (ENSXETG00000009602) #11	srsf11 (ENSXETG00000012371) #13	lrrc40 (ENSXETG00000012372) #14	lrrc7 (ENSXETG00000012373) #15	depdc1 (ENSXETG00000012376) #17	rpe65 (ENSXETG00000012377) #18	XB5906919 [provisional:mccc2] (ENSXETG00000012378)	ENSXETG00000045331	wls (ENSXETG00000012387) #19	diras3 (ENSXETG00000012389)	gng12 (ENSXETG00000045302)	gadd45a (ENSXETG00000012392) #21	serbp1 (ENSXETG00000012394) #22	ENSXETG00000043084 #23	ENSXETG00000044095 #23	slc35d1 (ENSXETG00000043386) #27	mier1 (ENSXETG00000012401) #29	dnai4 (ENSXETG00000020368) #30	insl5 (ENSXETG00000036496) #31	dynlt5 (ENSXETG00000006790) #32	sgip1 (ENSXETG00000020369) #33	ENSXETG00000020373	pde4b (ENSXETG00000020374) #34	ENSXETG00000048079	lepr (ENSXETG00000020387) #35	ENSXETG00000047321	leprot (ENSXETG00000025603) #36	dnajc6 (ENSXETG00000020390) #37
Coelacanth	MODERN SPECIES	689														GNG12 (ENSLACG00000000356)	GADD45A (ENSLACG00000003888) #21	SERBP1 (ENSLACG00000005639) #22	IL12RB2 (ENSLACG00000007034) #23	ENSLACG00000008559	ENSLACG00000009246 #25	SLC35D1 (ENSLACG00000010864) #27	MIER1 (ENSLACG00000011600) #29	DNAI4 (ENSLACG00000012131) #30	insl5a (ENSLACG00000012605) #31	DYNLT5 (ENSLACG00000012948) #32	SGIP1 (ENSLACG00000013174) #33	PDE4B (ENSLACG00000014460) #34	ENSLACG00000015586
Actinopterygii	ANCESTRAL SPECIES	8	ENSGT00940000166298	ENSGT00940000161004	ENSGT00940000156099	ENSGT00940000165058	ENSGT00950000183022.a.a.b.b	ENSGT00940000154304.C	ENSGT00940000164081	ENSGT00940000157380	ENSGT00940000159036	ENSGT00510000046975.b	ENSGT00940000164616	ENSGT00940000157769	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b	ENSGT00390000013340	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648
Neopterygii	ANCESTRAL SPECIES	8	ENSGT00940000166298	ENSGT00940000161004	ENSGT00940000156099	ENSGT00940000165058	ENSGT00950000183022.a.a.b.b	ENSGT00940000154304.C	ENSGT00940000164081	ENSGT00940000157380	ENSGT00940000159036	ENSGT00510000046975.b	ENSGT00940000164616	ENSGT00940000157769	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b	ENSGT00390000013340	ENSGT00520000055591.a #22	ENSGT00940000159829 #23	ENSGT00940000155665 #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301 #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES	9	ENSGT00940000154396.b.a.a.a ##31	ENSGT00940000155603.B	ENSGT00940000158520.f	ENSGT00940000156099	ENSGT00940000165058.a	ENSGT00950000183022.a.a.b.b	ENSGT00940000154304.C	ENSGT00940000164081.b	ENSGT00940000157380	ENSGT00940000159036	ENSGT00510000046975.b	ENSGT00940000164616	ENSGT00940000157769	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00520000055591.a.a #22	ENSGT00940000159829.c.a #23	ENSGT00940000159829.d #23	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000156209 #30	ENSGT00940000154396.b.b #31	ENSGT00940000174981	ENSGT00940000156301.a.a #33	ENSGT00940000155190 #34	ENSGT00390000018600	ENSGT00730000111209 #35	ENSGT00390000006503.a #36	ENSGT00940000158755 #37	ENSGT00940000154568	ENSGT00940000157092
Osteoglossiformes	ANCESTRAL SPECIES	5	ENSGT00390000016548	ENSGT00940000155446	ENSGT00940000155152.f.b	ENSGT00560000077332	ENSGT00940000154967.b.b.a	ENSGT00940000156099	ENSGT00940000165058.a	ENSGT00950000183022.a.a.b.b	ENSGT00940000154304.C	ENSGT00940000164081.b	ENSGT00940000159036.a	ENSGT00510000046975.b	ENSGT00940000157769	ENSGT00940000153464.A.b.s	ENSGT00940000154842.a.b.e	ENSGT00520000055591.a.a #22	ENSGT00940000159829.c.a #23	ENSGT00940000159829.d #23	ENSGT01030000234573.A.b.a.b #29	ENSGT00940000156209 #30	ENSGT00940000174981.a	ENSGT00940000156301.a.a #33	ENSGT00390000006503.a #36	ENSGT00940000158755.a #37	ENSGT00940000154568	ENSGT00940000157092.q	ENSGT00940000158648.c	ENSGT00940000157568.c	ENSGT00940000153947.B.a	ENSGT00940000155542.a	ENSGT00390000015466
Asian bonytongue	MODERN SPECIES	24	ENSSFOG00015002740	ENSSFOG00015002676	glrx2 (ENSSFOG00015002662)	uchl5 (ENSSFOG00015002628)	brinp3a.2 (ENSSFOG00015002598)	brinp3a.1 (ENSSFOG00015002567)	ENSSFOG00015002452	rgs8 (ENSSFOG00015002422)	rgs16 (ENSSFOG00015002203)	rgs5a (ENSSFOG00015025961)	rgs4 (ENSSFOG00015002140)	ENSSFOG00015002068	uhmk1 (ENSSFOG00015002013)	uap1 (ENSSFOG00015001952)	DDR2 (ENSSFOG00015001943)	serbp1a (ENSSFOG00015001870) #22	ENSSFOG00015001797 #23	ENSSFOG00015001776 #23	MIER1 (ENSSFOG00015001746) #29	dnai4 (ENSSFOG00015001726) #30	ENSSFOG00015001713	SGIP1 (ENSSFOG00015031180) #33	PDE4B (ENSSFOG00015001634) #34	ENSSFOG00015030854	lepr (ENSSFOG00015001625) #35	DNAJC6 (ENSSFOG00015001526) #37	AK3 (ENSSFOG00015001475)	jak1 (ENSSFOG00015001377)	RAVER2 (ENSSFOG00015001335)	CACHD1 (ENSSFOG00015001180)	ROR1 (ENSSFOG00015001121)
P. kingsleyae	MODERN SPECIES	5	aspm (ENSPKIG00000015833)	ENSPKIG00000015778	GLRX2 (ENSPKIG00000015759)	brinp3a.2 (ENSPKIG00000015726)	brinp3a.1 (ENSPKIG00000015702)	ENSPKIG00000015659	rgs8 (ENSPKIG00000015620)	rgs16 (ENSPKIG00000015525)	rgs5a (ENSPKIG00000015499)	ENSPKIG00000015477	rgs4 (ENSPKIG00000015451)	ENSPKIG00000015372	uhmk1 (ENSPKIG00000015328)	uap1 (ENSPKIG00000015291)	DDR2 (ENSPKIG00000015188)	serbp1a (ENSPKIG00000015108) #22	ENSPKIG00000015066 #23	ENSPKIG00000015010 #23	MIER1 (ENSPKIG00000014969) #29	dnai4 (ENSPKIG00000014864) #30	ENSPKIG00000014840	SGIP1 (ENSPKIG00000014494) #33	PDE4B (ENSPKIG00000014217) #34	LEPROT (ENSPKIG00000014148) #36	DNAJC6 (ENSPKIG00000014063) #37	ak4 (ENSPKIG00000014010)	jak1 (ENSPKIG00000013954)	RAVER2 (ENSPKIG00000013925)	ENSPKIG00000013908	CACHD1 (ENSPKIG00000013830)	ROR1 (ENSPKIG00000013783)
Clupeocephala	ANCESTRAL SPECIES	148	ENSGT00940000159428.e.a	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT00940000156099	ENSGT00940000165058.a	ENSGT00950000183022.a.a.b.b	ENSGT00940000154304.C	ENSGT00940000164081.b	ENSGT00940000157380	ENSGT00940000159036	ENSGT00510000046975.b	ENSGT00940000164616	ENSGT00940000157769	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00520000055591.a.a #22	ENSGT00940000159829.c.a #23
Otomorpha	ANCESTRAL SPECIES	170	ENSGT00940000159619.a	ENSGT00940000162953	ENSGT00940000164427.a.b	ENSGT00940000156099	ENSGT00940000165058.a	ENSGT00950000183022.a.a.b.b	ENSGT00940000154304.C	ENSGT00940000164081.b	ENSGT00940000157380	ENSGT00940000159036	ENSGT00510000046975.b	ENSGT00940000164616	ENSGT00940000157769	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00520000055591.a.a #22	ENSGT00940000159829.c.a #23	ENSGT00390000013340	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00940000155665.a #27	ENSGT01030000234573.A.b.a.d #29	ENSGT00940000154819.a.a.a	ENSGT00940000156282.a.b	ENSGT00390000006224	ENSGT00390000003015.c	ENSGT00940000166725	ENSGT01030000234931	ENSGT00510000048988	ENSGT00940000157693	ENSGT00940000166530
Clupeiformes	ANCESTRAL SPECIES	13	ENSGT00940000159619.a	ENSGT00940000162953	ENSGT00940000159678	ENSGT00940000156099	ENSGT00940000165058.a	ENSGT00950000183022.a.a.b.b	ENSGT00940000154304.C	ENSGT00940000164081.b	ENSGT00940000157380	ENSGT00940000159036	ENSGT00510000046975.b	ENSGT00940000157769	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340	ENSGT00520000055591.a.a #22	ENSGT00940000159829.c.a #23	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00940000155941.A	ENSGT00390000018718	ENSGT01030000234931	ENSGT00940000157693	ENSGT00940000166530	ENSGT00530000063498.B	ENSGT00730000111085.A
Denticle herring	MODERN SPECIES	4	her6 (ENSDCDG00000020542)	ENSDCDG00000020544	lrrc15 (ENSDCDG00000020545)	brinp3a.2 (ENSDCDG00000020549)	brinp3a.1 (ENSDCDG00000020554)	ENSDCDG00000020559	rgs8 (ENSDCDG00000020560)	rgs16 (ENSDCDG00000020564)	rgs5a (ENSDCDG00000020566)	rgs4 (ENSDCDG00000020570)	NOS1AP (ENSDCDG00000020575)	uhmk1 (ENSDCDG00000020582)	uap1 (ENSDCDG00000020591)	DDR2 (ENSDCDG00000020647)	hsd17b7 (ENSDCDG00000020750)	serbp1a (ENSDCDG00000020756) #22	ENSDCDG00000020758 #23	ENSDCDG00000020759 #23	ATP13A3 (ENSDCDG00000020765)	ENSDCDG00000020804	tie1 (ENSDCDG00000020825)	mpl (ENSDCDG00000022428)	prpf38a (ENSDCDG00000022433)	ABHD8 (ENSDCDG00000022436)	zgc:85936 (ENSDCDG00000022444)	lmnb2 (ENSDCDG00000022485)	rpl36 (ENSDCDG00000022659)	LONP1 (ENSDCDG00000022685)	larp6b (ENSDCDG00000023482)	VMAC (ENSDCDG00000023485)	ndufa11 (ENSDCDG00000023489)
Atlantic herring	MODERN SPECIES	1	ENSCHAG00000025729	ENSCHAG00000025728	lrrc15 (ENSCHAG00000025724)	brinp3a.2 (ENSCHAG00000025720)	brinp3a.1 (ENSCHAG00000025711)	ENSCHAG00000025684	rgs8 (ENSCHAG00000025677)	rgs16 (ENSCHAG00000025671)	rgs5a (ENSCHAG00000025664)	rgs4 (ENSCHAG00000025663)	NOS1AP (ENSCHAG00000025661)	uhmk1 (ENSCHAG00000025659)	uap1 (ENSCHAG00000025630)	DDR2 (ENSCHAG00000025439)	hsd17b7 (ENSCHAG00000025416)	serbp1a (ENSCHAG00000025376) #22	il12rb2 (ENSCHAG00000025366)	ENSCHAG00000025347 #23	ATP13A3 (ENSCHAG00000024418)	tmem44 (ENSCHAG00000024350)	ENSCHAG00000024342	tie1 (ENSCHAG00000024160)	mpl (ENSCHAG00000024138)	ENSCHAG00000024135	orc1 (ENSCHAG00000024107)	prpf38a (ENSCHAG00000024091)	dda1 (ENSCHAG00000024078)	acap2b (ENSCHAG00000021837)	htr2b (ENSCHAG00000021757)	psmd1 (ENSCHAG00000020333)	ttc14 (ENSCHAG00000020170)
Otophysi	ANCESTRAL SPECIES	6	ENSGT00940000159619.a	ENSGT00940000162953	ENSGT00940000164427.a.b	ENSGT00940000156099	ENSGT00940000165058.a	ENSGT00940000154304.C	ENSGT00940000164081.b	ENSGT00940000157380	ENSGT00940000159036	ENSGT00510000046975.b	ENSGT00940000164616	ENSGT00940000157769	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00940000155665.a #27	ENSGT01030000234573.A.b.a.d #29	ENSGT00940000154819.a.a.a.a	ENSGT00940000156282.a.b	ENSGT00390000006224	ENSGT00390000003015.c	ENSGT00940000166725	ENSGT01030000234931	ENSGT00510000048988	ENSGT00940000157693	ENSGT00940000166530	ENSGT00530000063498.B	ENSGT00730000111085.A
Characiphysae	ANCESTRAL SPECIES	2	ENSGT00940000159619.a	ENSGT00940000162953	ENSGT00940000164427.a.b	ENSGT00940000156099	ENSGT00940000165058.a	ENSGT00940000154304.C	ENSGT00940000164081.b	ENSGT00940000157380	ENSGT00940000159036	ENSGT00510000046975.b	ENSGT00940000164616	ENSGT00940000157769	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00940000155665.a #27	ENSGT01030000234573.A.b.a.d #29	ENSGT00940000154819.a.a.a.a	ENSGT00940000156282.a.b	ENSGT00390000006224	ENSGT00390000003015.c	ENSGT00940000166725	ENSGT01030000234931	ENSGT00940000157693	ENSGT00940000166530	ENSGT00530000063498.B	ENSGT00730000111085.A	ENSGT00530000063632.A.l
Channel catfish	MODERN SPECIES	2	ENSIPUG00000004889	ENSIPUG00000004893	brinp3a.2 (ENSIPUG00000004906)	ENSIPUG00000004913	brinp3a.1 (ENSIPUG00000004922)	rgs8 (ENSIPUG00000004966)	rgs16 (ENSIPUG00000004972)	rgs5a (ENSIPUG00000004987)	rgs4 (ENSIPUG00000005008)	NOS1AP (ENSIPUG00000005042)	ENSIPUG00000005089	uhmk1 (ENSIPUG00000005095)	uap1 (ENSIPUG00000005127)	ddr2 (ENSIPUG00000005192)	hsd17b7 (ENSIPUG00000005239)	serbp1a (ENSIPUG00000005252) #22	il12rb2 (ENSIPUG00000005273)	ENSIPUG00000005294	il23r (ENSIPUG00000005299) #23	slc35d1a (ENSIPUG00000005319) #27	mier1a (ENSIPUG00000005357) #29	lrp8 (ENSIPUG00000005394)	dmrt2b (ENSIPUG00000005442)	fam183a (ENSIPUG00000005457)	Tmem125 (ENSIPUG00000005492)	ap1m3 (ENSIPUG00000005505)	si:ch73-185c24.2 (ENSIPUG00000005615)	tie1 (ENSIPUG00000005642)	mpl (ENSIPUG00000005655)	orc1 (ENSIPUG00000005677)	prpf38a (ENSIPUG00000005757)
Characiphysae_b	ANCESTRAL SPECIES		ENSGT00940000159619.a	ENSGT00940000162953	ENSGT00940000164427.a.b	ENSGT00940000156099	ENSGT00940000165058.a	ENSGT00940000154304.C	ENSGT00940000164081.b	ENSGT00940000157380	ENSGT00940000159036	ENSGT00510000046975.b	ENSGT00940000164616	ENSGT00940000157769	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00940000155665.a #27	ENSGT01030000234573.A.b.a.d #29	ENSGT00940000154819.a.a.a.a	ENSGT00940000156282.a.b	ENSGT00390000006224	ENSGT00390000003015.c	ENSGT00940000166725	ENSGT01030000234931	ENSGT00940000157693	ENSGT00940000166530	ENSGT00530000063498.B	ENSGT00730000111085.A	ENSGT00530000063632.A.l
Characoidei	ANCESTRAL SPECIES		ENSGT00550000074851	ENSGT00940000159619.a	ENSGT00940000162953	ENSGT00940000164427.a.b	ENSGT00940000156099	ENSGT00940000165058.a	ENSGT00940000154304.C	ENSGT00940000164081.b	ENSGT00940000157380	ENSGT00940000159036	ENSGT00510000046975.b	ENSGT00940000157769	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00940000155665.a #27	ENSGT01030000234573.A.b.a.d #29	ENSGT00940000154819.a.a.a.a	ENSGT00940000156282.a.b	ENSGT00390000006224	ENSGT00390000003015.c	ENSGT00940000166725	ENSGT00940000173535	ENSGT00940000157693	ENSGT00940000166530	ENSGT00530000063498.B	ENSGT00730000111085.A	ENSGT00530000063632.A.l
Red-bellied piranha	MODERN SPECIES	9	her6 (ENSPNAG00000011552)	ENSPNAG00000011516	ENSPNAG00000001769	ENSPNAG00000011472	brinp3a.2 (ENSPNAG00000011469)	brinp3a.1 (ENSPNAG00000011442)	rgs8 (ENSPNAG00000011427)	rgs16 (ENSPNAG00000011410)	rgs5a (ENSPNAG00000001715)	rgs4 (ENSPNAG00000001699)	NOS1AP (ENSPNAG00000011354)	uhmk1 (ENSPNAG00000011288)	uap1 (ENSPNAG00000001637)	DDR2 (ENSPNAG00000001610)	hsd17b7 (ENSPNAG00000011164)	serbp1a (ENSPNAG00000011149) #22	il12rb2 (ENSPNAG00000011135)	il23r (ENSPNAG00000001552) #23	slc35d1a (ENSPNAG00000001523) #27	mier1a (ENSPNAG00000011050) #29	lrp8 (ENSPNAG00000010993)	dmrt2b (ENSPNAG00000010744)	cfap144 (ENSPNAG00000010724)	TMEM125 (ENSPNAG00000010710)	ap1m3 (ENSPNAG00000001432)	si:ch73-185c24.2 (ENSPNAG00000010668)	tie1 (ENSPNAG00000010620)	mpl (ENSPNAG00000010486)	orc1 (ENSPNAG00000010455)	prpf38a (ENSPNAG00000010399)	pomgnt1 (ENSPNAG00000010365)
Mexicana tetra	MODERN SPECIES	4	her6 (ENSAMXG00000012278)	ENSAMXG00000037602	ENSAMXG00000038444	ENSAMXG00000042939	brinp3a.2 (ENSAMXG00000032760)	brinp3a.1 (ENSAMXG00000031426)	rgs8 (ENSAMXG00000032897)	rgs16 (ENSAMXG00000041945)	rgs5a (ENSAMXG00000011564)	rgs4 (ENSAMXG00000035622)	NOS1AP (ENSAMXG00000011523)	uhmk1 (ENSAMXG00000037781)	uap1 (ENSAMXG00000011503)	DDR2 (ENSAMXG00000011496)	hsd17b7 (ENSAMXG00000029262)	serbp1a (ENSAMXG00000011483) #22	il12rb2 (ENSAMXG00000011476)	il23r (ENSAMXG00000029026) #23	slc35d1a (ENSAMXG00000042217) #27	mier1a (ENSAMXG00000011460) #29	lrp8 (ENSAMXG00000011425)	dmrt2b (ENSAMXG00000011403)	ENSAMXG00000034783	TMEM125 (ENSAMXG00000025440)	ap1m3 (ENSAMXG00000011372)	si:ch73-185c24.2 (ENSAMXG00000033984)	tie1 (ENSAMXG00000011333)	mpl (ENSAMXG00000011307)	orc1 (ENSAMXG00000011285)	prpf38a (ENSAMXG00000029274)	pomgnt1 (ENSAMXG00000011229)
Electric eel	MODERN SPECIES	31	her6 (ENSEEEG00000007061)	ENSEEEG00000007066	GP5 (ENSEEEG00000007069)	brinp3a.2 (ENSEEEG00000007070)	brinp3a.1 (ENSEEEG00000007072)	rgs8 (ENSEEEG00000007073)	rgs16 (ENSEEEG00000007075)	rgs5a (ENSEEEG00000007076)	rgs4 (ENSEEEG00000007080)	NOS1AP (ENSEEEG00000007081)	ENSEEEG00000007084	uhmk1 (ENSEEEG00000007085)	uap1 (ENSEEEG00000007090)	DDR2 (ENSEEEG00000007093)	hsd17b7 (ENSEEEG00000007099)	serbp1a (ENSEEEG00000007102) #22	il12rb2 (ENSEEEG00000007104)	ENSEEEG00000007106	slc35d1a (ENSEEEG00000007111) #27	mier1a (ENSEEEG00000007118) #29	lrp8 (ENSEEEG00000007145)	ENSEEEG00000007591	dmrt2b (ENSEEEG00000007592)	cfap144 (ENSEEEG00000007599)	TMEM125 (ENSEEEG00000007601)	ap1m3 (ENSEEEG00000007627)	ENSEEEG00000008580	tie1 (ENSEEEG00000008596)	mpl (ENSEEEG00000008792)	orc1 (ENSEEEG00000008802)	prpf38a (ENSEEEG00000008841)
Cyprinoidei	ANCESTRAL SPECIES	2	ENSGT00940000162953	ENSGT00940000164427.a.b	ENSGT00950000182844.b.b.b.a.a.j	ENSGT00940000156099	ENSGT00940000165058.a	ENSGT00940000154304.C	ENSGT00940000164081.b	ENSGT00940000157380	ENSGT00940000159036	ENSGT00510000046975.b	ENSGT00940000164616	ENSGT00940000157769	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a.a	ENSGT00940000159829.d #23	ENSGT00940000155665.a #27	ENSGT01030000234573.A.b.a.d #29	ENSGT00940000154819.a.a.a.a	ENSGT00940000156282.a.b	ENSGT00390000006224	ENSGT00390000003015.c	ENSGT00940000166725	ENSGT01030000234931	ENSGT00510000048988	ENSGT00940000157693	ENSGT00940000166530	ENSGT00530000063498.B	ENSGT00730000111085.A
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	12	ENSGT00940000162953.u.b	ENSGT00940000164427.a.b	ENSGT00940000162953.u.a	ENSGT00950000182844.b.b.b.a.a.j.b	ENSGT00940000156099.c	ENSGT00940000165058.a.a	ENSGT00940000154304.C.d.a	ENSGT00940000164081.b.a	ENSGT00940000157380.a	ENSGT00940000159036.d	ENSGT00510000046975.b.i.a	ENSGT00940000157769.k.b	ENSGT00940000153464.A.b.m	ENSGT00940000154842.a.b.e.a	ENSGT00390000013340.b	ENSGT00520000055591.a.a.a #22	ENSGT00940000155776.a.a.b	ENSGT00940000159829.d.b #23	ENSGT00940000155665.a.a #27	ENSGT01030000234573.A.b.a.d.b #29	ENSGT00940000154819.a.a.a.a.b	ENSGT00940000156282.a.b.d	ENSGT00390000006224	ENSGT00390000003015.c.b	ENSGT00940000166725.a	ENSGT00510000048988	ENSGT00940000157693.m	ENSGT00940000166530.b	ENSGT00530000063498.B.a	ENSGT00730000111085.A.eb	ENSGT00940000156539.v
Goldfish	MODERN SPECIES	46	her6 (ENSCARG00000031026)	ENSCARG00000031013	ENSCARG00000031009	rhcgl1 (ENSCARG00000029900)	brinp3a.2 (ENSCARG00000029857)	brinp3a.1 (ENSCARG00000029850)	rgs8 (ENSCARG00000029837)	rgs16 (ENSCARG00000029822)	rgs5a (ENSCARG00000029812)	rgs4 (ENSCARG00000029804)	ENSCARG00000029747	uhmk1 (ENSCARG00000029706)	uap1 (ENSCARG00000029631)	DDR2 (ENSCARG00000029459)	hsd17b7 (ENSCARG00000029415)	serbp1a (ENSCARG00000029384) #22	il12rb2 (ENSCARG00000029321)	il23r (ENSCARG00000029297) #23	slc35d1a (ENSCARG00000028855) #27	mier1a (ENSCARG00000028770) #29	lrp8 (ENSCARG00000028366)	dmrt2b (ENSCARG00000028285)	cfap144 (ENSCARG00000028276)	TMEM125 (ENSCARG00000028268)	ap1m3 (ENSCARG00000028067)	ENSCARG00000028021	tie1 (ENSCARG00000026648)	mpl (ENSCARG00000026515)	orc1 (ENSCARG00000026414)	prpf38a (ENSCARG00000026375)	akr1a1b (ENSCARG00000026295)
Cyprininae_a	ANCESTRAL SPECIES	23	ENSGT00940000162953.u.b	ENSGT00940000164427.a.b.g	ENSGT00950000182844.b.b.b.a.a.j.b	ENSGT00940000156099.c	ENSGT00940000165058.a.a.a	ENSGT00940000154304.C.d.a	ENSGT00940000164081.b.a	ENSGT00940000157380.a	ENSGT00940000159036.d	ENSGT00510000046975.b.i.a	ENSGT00940000164616	ENSGT00940000157769.k.b	ENSGT00940000153464.A.b.m	ENSGT00940000154842.a.b.e.a	ENSGT00390000013340.a	ENSGT00520000055591.a.a.a #22	ENSGT00940000155776.a.a.b	ENSGT00940000159829.d.b #23	ENSGT00940000155665.a.a #27	ENSGT01030000234573.A.b.a.d.b #29	ENSGT00940000154819.a.a.a.a.b	ENSGT00940000156282.a.b.d	ENSGT00390000006224	ENSGT00390000003015.c.b	ENSGT00940000166725.a	ENSGT00510000048988	ENSGT00940000157693.m	ENSGT00940000166530.b	ENSGT00530000063498.B.a	ENSGT00730000111085.A.eb	ENSGT00940000156539.v
Common carp reference	MODERN SPECIES	10	ENSCCRG00000064817	ENSCCRG00000065404	ENSCCRG00000040696	rhcgl1 (ENSCCRG00000029442)	brinp3a.2 (ENSCCRG00000073021)	brinp3a.1 (ENSCCRG00000055845)	rgs8 (ENSCCRG00000052590)	rgs16 (ENSCCRG00000029441)	rgs5a (ENSCCRG00000029440)	rgs4 (ENSCCRG00000073562)	ENSCCRG00000081313	uhmk1 (ENSCCRG00000005528)	uap1 (ENSCCRG00000005491)	ENSCCRG00000005018	hsd17b7 (ENSCCRG00000004923)	serbp1a (ENSCCRG00000004304) #22	il12rb2 (ENSCCRG00000000486)	il23r (ENSCCRG00000019996) #23	slc35d1a (ENSCCRG00000002577) #27	mier1a (ENSCCRG00000020147) #29	lrp8 (ENSCCRG00000028714)	dmrt2b (ENSCCRG00000007718)	cfap144 (ENSCCRG00000000800)	TMEM125 (ENSCCRG00000073017)	ap1m3 (ENSCCRG00000031744)	C1orf210 (ENSCCRG00000007924)	ENSCCRG00000003678	tie1 (ENSCCRG00000038381)	mpl (ENSCCRG00000031421)	prpf38a (ENSCCRG00000072111)	akr1a1b (ENSCCRG00000079046)
Golden-line barbel	MODERN SPECIES	411						rgs8 (ENSSGRG00000055553)	rgs16 (ENSSGRG00000055554)	rgs5a (ENSSGRG00000055555)	rgs4 (ENSSGRG00000055556)	ENSSGRG00000055557	ENSSGRG00000055558	uhmk1 (ENSSGRG00000055559)	uap1 (ENSSGRG00000055560)	DDR2 (ENSSGRG00000055561)	hsd17b7 (ENSSGRG00000055562)	serbp1a (ENSSGRG00000055563) #22	il12rb2 (ENSSGRG00000055564)	il23r (ENSSGRG00000055565) #23	slc35d1a (ENSSGRG00000055567) #27	mier1a (ENSSGRG00000055568) #29	lrp8 (ENSSGRG00000055569)	dmrt2b (ENSSGRG00000055570)	cfap144 (ENSSGRG00000055571)	TMEM125 (ENSSGRG00000055573)	ap1m3 (ENSSGRG00000055575)	ENSSGRG00000001189	tie1 (ENSSGRG00000001199)	ENSSGRG00000001212	orc1 (ENSSGRG00000001331)	akr1a1b (ENSSGRG00000001877)	nasp (ENSSGRG00000002106)
Cyprininae	ANCESTRAL SPECIES	131	ENSGT01030000234818.a	ENSGT00550000074851.a	ENSGT00940000159619.a.h	ENSGT00950000182844.b.b.b.a.a.j.a	ENSGT00940000156099.d	ENSGT00940000165058.a.b	ENSGT00940000154304.C.d.b	ENSGT00940000164081.b.b	ENSGT00940000157380.b	ENSGT00940000159036.c	ENSGT00510000046975.b.i.b	ENSGT00940000157769.k.a	ENSGT00940000153464.A.b.n	ENSGT00940000154842.a.b.e.b	ENSGT00390000013340.a	ENSGT00520000055591.a.a.b #22	ENSGT00940000155776.a.a.a	ENSGT00940000159829.d.a #23	ENSGT00940000155665.a.b #27	ENSGT01030000234573.A.b.a.d.a #29	ENSGT00940000154819.a.a.a.a.a	ENSGT00940000156282.a.b.c	ENSGT00390000003015.c.a	ENSGT00940000166725.b	ENSGT01030000234931	ENSGT00940000157693.n	ENSGT00940000166530.a	ENSGT00530000063498.B.b	ENSGT00730000111085.A.db	ENSGT00940000156539.u	ENSGT00390000016650.c.a.f
Cyprininae_a	ANCESTRAL SPECIES	10	ENSGT00940000159619.a.h	ENSGT00940000162953.u.a	ENSGT00940000164427.a.b.h	ENSGT00950000182844.b.b.b.a.a.j.a	ENSGT00940000156099.d	ENSGT00940000165058.a.b	ENSGT00940000154304.C.d.b	ENSGT00940000164081.b.b	ENSGT00940000157380.b	ENSGT00940000159036.c	ENSGT00510000046975.b.i.b	ENSGT00940000157769.k.a	ENSGT00940000153464.A.b.n	ENSGT00940000154842.a.b.e.b	ENSGT00390000013340.b	ENSGT00520000055591.a.a.b #22	ENSGT00940000155776.a.a.a	ENSGT00940000159829.d.a #23	ENSGT00940000155665.a.b #27	ENSGT01030000234573.A.b.a.d.a #29	ENSGT00940000154819.a.a.a.a.a	ENSGT00940000156282.a.b.c	ENSGT00390000003015.c.a	ENSGT00940000166725.b	ENSGT01030000234931	ENSGT00940000157693.n	ENSGT00940000166530.a	ENSGT00530000063498.B.b	ENSGT00730000111085.A.db	ENSGT00940000156539.u	ENSGT00390000016650.c.a.f
Golden-line barbel	MODERN SPECIES	186											ENSSGRG00000023010	ENSSGRG00000023012	uhmk1 (ENSSGRG00000023013)	uap1 (ENSSGRG00000023021)	DDR2 (ENSSGRG00000023088)	serbp1a (ENSSGRG00000023110) #22	il12rb2 (ENSSGRG00000023111)	il23r (ENSSGRG00000023112) #23	slc35d1a (ENSSGRG00000023118) #27	mier1a (ENSSGRG00000023169) #29	lrp8 (ENSSGRG00000023199)	dmrt2b (ENSSGRG00000023245)	cfap144 (ENSSGRG00000023246)	ENSSGRG00000023247	TMEM125 (ENSSGRG00000023248)	ap1m3 (ENSSGRG00000023250)	ENSSGRG00000023251	tie1 (ENSSGRG00000023283)	mpl (ENSSGRG00000023664)	orc1 (ENSSGRG00000023671)	akr1a1b (ENSSGRG00000023967)
Goldfish	MODERN SPECIES	24	mitfa (ENSCARG00000011744)	zgc:113054 (ENSCARG00000011990)	MDFIC2 (ENSCARG00000012024)	foxp1b (ENSCARG00000012040)	brinp3a.1 (ENSCARG00000012218)	rgs8 (ENSCARG00000012226)	rgs16 (ENSCARG00000012232)	rgs5a (ENSCARG00000012235)	rgs4 (ENSCARG00000012238)	ENSCARG00000012255	ENSCARG00000012440	uhmk1 (ENSCARG00000012456)	uap1 (ENSCARG00000012495)	DDR2 (ENSCARG00000012545)	hsd17b7 (ENSCARG00000013060)	serbp1a (ENSCARG00000013066) #22	il12rb2 (ENSCARG00000013084)	il23r (ENSCARG00000013103) #23	slc35d1a (ENSCARG00000013129) #27	mier1a (ENSCARG00000013232) #29	lrp8 (ENSCARG00000013336)	dmrt2b (ENSCARG00000013496)	TMEM125 (ENSCARG00000013510)	ap1m3 (ENSCARG00000013524)	ENSCARG00000013619	tie1 (ENSCARG00000013636)	mpl (ENSCARG00000013760)	orc1 (ENSCARG00000013841)	prpf38a (ENSCARG00000013878)	akr1a1b (ENSCARG00000013890)	nasp (ENSCARG00000013902)
Zebrafish	MODERN SPECIES	21	her6 (ENSDARG00000006514)	lrrc15 (ENSDARG00000070792)	rhcgl1 (ENSDARG00000007080)	brinp3a.2 (ENSDARG00000061051)	brinp3a.1 (ENSDARG00000076351)	rgs8 (ENSDARG00000070037)	rgs16 (ENSDARG00000040177)	rgs5a (ENSDARG00000002644)	rgs4 (ENSDARG00000070047)	NOS1AP (ENSDARG00000105071)	ENSDARG00000078725	uhmk1 (ENSDARG00000059575)	uap1 (ENSDARG00000052170)	DDR2 (ENSDARG00000100693)	hsd17b7 (ENSDARG00000088140)	serbp1a (ENSDARG00000074242) #22	il12rb2 (ENSDARG00000052157)	il23r (ENSDARG00000052158) #23	slc35d1a (ENSDARG00000011973) #27	mier1a (ENSDARG00000041072) #29	lrp8 (ENSDARG00000070074)	dmrt2b (ENSDARG00000070013)	cfap144 (ENSDARG00000087144)	ap1m3 (ENSDARG00000039512)	si:ch73-185c24.2 (ENSDARG00000096908)	tie1 (ENSDARG00000004105)	mpl (ENSDARG00000039222)	orc1 (ENSDARG00000039217)	prpf38a (ENSDARG00000039213)	akr1a1b (ENSDARG00000052030)	nasp (ENSDARG00000039208)
Euteleosteomorpha	ANCESTRAL SPECIES	75	ENSGT00940000158520.f	ENSGT00940000157316.e.b	ENSGT00940000156099	ENSGT00940000165058.a	ENSGT00950000183022.a.a.b.b	ENSGT00940000154304.C	ENSGT00940000164081.b	ENSGT00940000157380	ENSGT00940000159036	ENSGT00510000046975.b	ENSGT00940000164616	ENSGT00940000157769	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00990000205848	ENSGT00950000182879.a.b.b	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01100000263662	ENSGT00740000116213	ENSGT00390000003464	ENSGT00940000156906.j.a.a	ENSGT00940000158798
Acanthomorphata	ANCESTRAL SPECIES	11	ENSGT00940000166091	ENSGT00950000182920.b.a.a	ENSGT00940000159170.c	ENSGT00940000164939.a.a	ENSGT00940000154737.c.h	ENSGT00940000160191	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00950000182879.a.b.b	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01100000263662	ENSGT01070000253866	ENSGT00740000116213	ENSGT00390000003464	ENSGT00940000156906.j.a.a
Euacanthomorphacea	ANCESTRAL SPECIES	9	ENSGT00940000166091	ENSGT00950000182920.b.a.a	ENSGT00940000159170.c	ENSGT00940000164939.a.a	ENSGT00940000154737.c.h	ENSGT00940000160191	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00990000205848	ENSGT00950000182879.a.b.b	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01100000263662	ENSGT01070000253866	ENSGT00740000116213	ENSGT00390000003464
Percomorphaceae	ANCESTRAL SPECIES	12	ENSGT00940000170739	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000163126.a.b	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00990000205848	ENSGT00950000182879.a.b.b	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01100000263662	ENSGT01070000253866	ENSGT00740000116213	ENSGT00390000003464
Tiger tail seahorse	MODERN SPECIES	469	ARHGAP45 (ENSHCOG00000000898)	POLR2E (ENSHCOG00000000906)	ENSHCOG00000000907	gpx4b (ENSHCOG00000000909)	PIP5K1C (ENSHCOG00000000914)	ENSHCOG00000000954	marchf2 (ENSHCOG00000000979)	ENSHCOG00000000985	ENSHCOG00000000990	fsd1 (ENSHCOG00000000994)	chaf1a (ENSHCOG00000001004)	ubxn6 (ENSHCOG00000001010)	uap1 (ENSHCOG00000001019)	DDR2 (ENSHCOG00000001029)	hsd17b7 (ENSHCOG00000000044)	serbp1a (ENSHCOG00000001044) #22	tmem59l (ENSHCOG00000001047)	ENSHCOG00000001053	ssbp4 (ENSHCOG00000001058)	fkbp8 (ENSHCOG00000001065)	ell (ENSHCOG00000001070)	DOT1L (ENSHCOG00000001086)	amh (ENSHCOG00000001199)	oaz1a (ENSHCOG00000001278)	org (ENSHCOG00000001285)	lingo3a (ENSHCOG00000001286)	ENSHCOG00000000737	ENSHCOG00000001314	ONECUT3 (ENSHCOG00000001323)	foxq2 (ENSHCOG00000001331)	pias4a (ENSHCOG00000001356)
Percomorphaceae_B	ANCESTRAL SPECIES	9	ENSGT00940000159258.d	ENSGT00940000163126.a.b.g.b	ENSGT00940000163126.a.b.h	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.g.a	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00950000182879.a.b.b.b.a	ENSGT00990000205848	ENSGT00950000182879.a.b.b.a.b	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01070000253866	ENSGT00740000116213	ENSGT00390000003464
Ovalentaria	ANCESTRAL SPECIES	9	ENSGT00940000161913.b	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00950000182879.a.b.b.a.b.b	ENSGT00950000182879.a.b.b.b.a	ENSGT00990000205848	ENSGT00950000182879.a.b.b.a.b.a	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01070000253866	ENSGT00740000116213
Ovalentaria_B	ANCESTRAL SPECIES	8	ENSGT00940000165680.A	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00950000182879.a.b.b.a.b.b	ENSGT00950000182879.a.b.b.b.a	ENSGT00990000205848	ENSGT00950000182879.a.b.b.a.b.a	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01070000253866	ENSGT00740000116213
Pomacentridae	ANCESTRAL SPECIES	14	ENSGT00390000013841	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00950000182879.a.b.b.a.b.a.a.b	ENSGT00950000182879.a.b.a.a.b.b.b.b.f	ENSGT00990000205848	ENSGT00950000182879.a.b.b.a.b.a.a.a.a	ENSGT00950000182879.a.b.a.a.b.a.g.b.k	ENSGT00950000182879.a.b.a.a.b.b.b.b.e	ENSGT00950000182879.a.b.a.a.b.a.g.b.l	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01070000253866
Pomacentridae_A	ANCESTRAL SPECIES		ENSGT00390000013841	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00950000182879.a.b.b.a.b.a.a.b	ENSGT00950000182879.a.b.a.a.b.b.b.b.f	ENSGT00990000205848	ENSGT00950000182879.a.b.b.a.b.a.a.a.a	ENSGT00950000182879.a.b.a.a.b.a.g.b.k	ENSGT00950000182879.a.b.a.a.b.b.b.b.e	ENSGT00950000182879.a.b.a.a.b.a.g.b.l	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01070000253866
Amphiprion	ANCESTRAL SPECIES	2	ENSGT00940000165680.A	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00950000182879.a.b.b.a.b.a.a.b	ENSGT00990000205848	ENSGT00950000182879.a.b.b.a.b.a.a.a.a.b	ENSGT00950000182879.a.b.b.a.b.a.b.a.a	ENSGT00940000179890.a	ENSGT00950000182879.a.b.b.a.b.a.b.b.b	ENSGT00950000182879.a.b.b.a.b.a.b.b.a	ENSGT00950000182879.a.b.b.a.b.a.a.a.b	ENSGT00950000182879.a.b.b.a.b.a.a.a.a.a.a	ENSGT00950000182879.a.b.b.a.b.a.a.a.a.a.b	ENSGT00950000182879.a.b.a.a.b.a.g.b.k.a	ENSGT00950000182879.a.b.a.a.b.a.g.b.k.b	ENSGT00950000182879.a.b.a.a.b.b.b.b.e
Clown anemonefish	MODERN SPECIES	577														DDR2 (ENSAOCG00000017319)	hsd17b7 (ENSAOCG00000017277)	serbp1a (ENSAOCG00000002731) #22	il12rb2 (ENSAOCG00000017237)	ENSAOCG00000017102 #23	ENSAOCG00000017063	ENSAOCG00000017045	fynb (ENSAOCG00000017025)	ENSAOCG00000016985	ENSAOCG00000016973	REV3L (ENSAOCG00000016940)	mfsd4b (ENSAOCG00000016903)	avpr2l (ENSAOCG00000016880)	ENSAOCG00000002032	dnajb9b (ENSAOCG00000016821)	akr1b1.1 (ENSAOCG00000016808)	akr1b1.2 (ENSAOCG00000016758)	tfec (ENSAOCG00000016709)
Orange clownfish	MODERN SPECIES	11	ENSAPEG00000009041	PIP5K1C (ENSAPEG00000009071)	rab11ba (ENSAPEG00000009177)	marchf2 (ENSAPEG00000009205)	ENSAPEG00000009227	ENSAPEG00000009245	ENSAPEG00000009260	fsd1 (ENSAPEG00000009273)	si:ch211-129c21.1 (ENSAPEG00000009283)	scamp4 (ENSAPEG00000009291)	chaf1a (ENSAPEG00000009323)	ubxn6 (ENSAPEG00000009347)	uap1 (ENSAPEG00000009472)	DDR2 (ENSAPEG00000009522)	hsd17b7 (ENSAPEG00000009585)	serbp1a (ENSAPEG00000009604) #22	il12rb2 (ENSAPEG00000009692)	ENSAPEG00000009715 #23	ENSAPEG00000009836	ENSAPEG00000009852	ENSAPEG00000009862	ENSAPEG00000009902	ENSAPEG00000009943	ENSAPEG00000009953	ENSAPEG00000009982	ENSAPEG00000010040	cyp2n13 (ENSAPEG00000010865)	cyp2n13 (ENSAPEG00000010876)	cyp2n13 (ENSAPEG00000010906)	cyp2n13 (ENSAPEG00000010938)	hook1 (ENSAPEG00000011002)
Spiny chromis	MODERN SPECIES	1325						ENSAPOG00000019118	ENSAPOG00000019128	fsd1 (ENSAPOG00000019207)	si:ch211-129c21.1 (ENSAPOG00000019235)	scamp4 (ENSAPOG00000019276)	chaf1a (ENSAPOG00000019292)	ubxn6 (ENSAPOG00000019301)	uap1 (ENSAPOG00000019382)	DDR2 (ENSAPOG00000019464)	hsd17b7 (ENSAPOG00000019472)	serbp1a (ENSAPOG00000001006) #22	il12rb2 (ENSAPOG00000001101)	ENSAPOG00000019572 #23	ENSAPOG00000019620	ENSAPOG00000019632	ENSAPOG00000019648	ENSAPOG00000019677
Bicolor damselfish	MODERN SPECIES	1474						ENSSPAG00000014559	ENSSPAG00000014542	fsd1 (ENSSPAG00000014443)	si:ch211-129c21.1 (ENSSPAG00000014409)	scamp4 (ENSSPAG00000014378)	chaf1a (ENSSPAG00000014297)	ubxn6 (ENSSPAG00000014276)	uap1 (ENSSPAG00000014217)	DDR2 (ENSSPAG00000014147)	hsd17b7 (ENSSPAG00000014092)	serbp1a (ENSSPAG00000014054) #22	il12rb2 (ENSSPAG00000014022)	ENSSPAG00000013993 #23	ENSSPAG00000013986
Cichlidae	ANCESTRAL SPECIES	17	ENSGT00940000165680.A	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00950000182879.a.b.b.a.b.b.a.a	ENSGT00950000182879.a.b.b.b.a	ENSGT00990000205848	ENSGT00950000182879.a.b.b.a.b.a.c.a	ENSGT00940000179890.a	ENSGT00950000182879.a.b.b.a.b.a.c.b	ENSGT00950000182879.a.b.b.a.b.b.b	ENSGT00950000182879.a.b.a.a.b.b.b.b.g	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600
Pseudocrenilabrinae	ANCESTRAL SPECIES	10	ENSGT00940000165680.A	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00950000182879.a.b.b.a.b.b.a.a	ENSGT00950000182879.a.b.b.b.a	ENSGT00990000205848	ENSGT00950000182879.a.b.b.a.b.a.c.a.c.b	ENSGT00950000182879.a.b.b.a.b.b.b.a	ENSGT00950000182879.a.b.b.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.b.b.b.g.a	ENSGT00950000182879.a.b.a.a.b.b.b.b.g.b	ENSGT00950000182879.a.b.a.a.b.b.b.b.h	ENSGT00950000182879.a.b.b.a.b.b.a.b	ENSGT00950000182879.a.b.a.a.b.a.g.b.h	ENSGT00950000182879.a.b.a.a.b.a.g.b.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.b.g.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	26	ENSGT00940000165680.A	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00950000182879.a.b.b.a.b.b.a.a	ENSGT00950000182879.a.b.b.b.a
Haplochromini	ANCESTRAL SPECIES	16	ENSGT00390000013841	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00950000182879.a.b.b.a.b.b.a.a	ENSGT00950000182879.a.b.b.b.a	ENSGT00950000182879.a.b.b.a.b.a.c.a.c.b	ENSGT00950000182879.a.b.b.a.b.a.c.b.b	ENSGT00950000182879.a.b.b.a.b.a.c.a.c.a.a	ENSGT00950000182879.a.b.b.a.b.a.c.b.a	ENSGT00950000182879.a.b.b.a.b.b.b.a	ENSGT00950000182879.a.b.b.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.b.b.b.g.a	ENSGT00950000182879.a.b.a.a.b.b.b.b.g.b	ENSGT00950000182879.a.b.a.a.b.b.b.b.h	ENSGT00950000182879.a.b.b.a.b.b.a.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b.h
Burton s mouthbrooder	MODERN SPECIES	853		gpx4a (ENSHBUG00000009822)	PIP5K1C (ENSHBUG00000009866)	rab11ba (ENSHBUG00000009894)	marchf2 (ENSHBUG00000009928)	ENSHBUG00000009947	stap2b (ENSHBUG00000009959)	fsd1 (ENSHBUG00000009969)	si:ch211-129c21.1 (ENSHBUG00000009979)	scamp4 (ENSHBUG00000000931)	chaf1a (ENSHBUG00000010031)	ubxn6 (ENSHBUG00000010046)	uap1 (ENSHBUG00000010126)	DDR2 (ENSHBUG00000010237)	hsd17b7 (ENSHBUG00000010261)	serbp1a (ENSHBUG00000010298) #22	il12rb2 (ENSHBUG00000010334)	ENSHBUG00000000274 #23	ENSHBUG00000011040	ENSHBUG00000011109	ENSHBUG00000011132	ENSHBUG00000012302	ENSHBUG00000012347	ENSHBUG00000012427
Haplochromini_A	ANCESTRAL SPECIES	15	ENSGT00390000013841	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00950000182879.a.b.b.a.b.b.a.a	ENSGT00950000182879.a.b.b.b.a	ENSGT00950000182879.a.b.b.a.b.a.c.a.c.b	ENSGT00950000182879.a.b.b.a.b.a.c.a.d	ENSGT00950000182879.a.b.b.a.b.a.c.b.b	ENSGT00950000182879.a.b.b.a.b.a.c.a.c.a.a	ENSGT00950000182879.a.b.b.a.b.a.c.b.a	ENSGT00950000182879.a.b.b.a.b.b.a.b.b	ENSGT00950000182879.a.b.b.a.b.b.a.b.a	ENSGT00950000182879.a.b.b.a.b.b.b.a	ENSGT00950000182879.a.b.b.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.b.b.b.g.a	ENSGT00950000182879.a.b.a.a.b.b.b.b.g.b
Haplochromini_B	ANCESTRAL SPECIES	10	ENSGT00390000013841	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a.e	ENSGT00940000159829.d #23	ENSGT00950000182879.a.b.b.a.b.b.a.a	ENSGT00950000182879.a.b.b.b.a	ENSGT00950000182879.a.b.b.a.b.a.c.a.c.b	ENSGT00950000182879.a.b.b.a.b.a.c.a.d	ENSGT00950000182879.a.b.b.a.b.a.c.b.b	ENSGT00950000182879.a.b.b.a.b.a.c.a.c.a.a	ENSGT00950000182879.a.b.b.a.b.a.c.b.a	ENSGT00950000182879.a.b.b.a.b.b.a.b.b	ENSGT00950000182879.a.b.b.a.b.b.a.b.a	ENSGT00950000182879.a.b.b.a.b.b.b.b.b	ENSGT00950000182879.a.b.b.a.b.b.b.a	ENSGT00950000182879.a.b.b.a.b.b.b.b.a	ENSGT00950000182879.a.b.a.a.b.b.b.b.g.a
Eastern happy	MODERN SPECIES	14	POLR2E (ENSACLG00000005254)	gpx4a (ENSACLG00000005282)	PIP5K1C (ENSACLG00000005378)	rab11ba (ENSACLG00000005420)	marchf2 (ENSACLG00000005438)	ENSACLG00000005446	stap2b (ENSACLG00000005464)	fsd1 (ENSACLG00000005484)	si:ch211-129c21.1 (ENSACLG00000005577)	scamp4 (ENSACLG00000005608)	chaf1a (ENSACLG00000005630)	ubxn6 (ENSACLG00000005647)	uap1 (ENSACLG00000005663)	DDR2 (ENSACLG00000005714)	hsd17b7 (ENSACLG00000005757)	serbp1a (ENSACLG00000005768) #22	il12rb2 (ENSACLG00000005783)	ENSACLG00000005910 #23	ENSACLG00000005946	ENSACLG00000006607	ENSACLG00000007732	ENSACLG00000007815	ENSACLG00000008118	ENSACLG00000008366	ENSACLG00000009351	ENSACLG00000009504	ENSACLG00000009776	ENSACLG00000009862	ENSACLG00000009938	ENSACLG00000010110	ENSACLG00000010377
Zebra mbuna	MODERN SPECIES	1105	POLR2E (ENSMZEG00005010796)	gpx4a (ENSMZEG00005010823)	PIP5K1C (ENSMZEG00005010892)	rab11ba (ENSMZEG00005010947)	marchf2 (ENSMZEG00005010963)	ENSMZEG00005010975	stap2b (ENSMZEG00005010987)	fsd1 (ENSMZEG00005011009)	si:ch211-129c21.1 (ENSMZEG00005011031)	scamp4 (ENSMZEG00005011050)	chaf1a (ENSMZEG00005011071)	ubxn6 (ENSMZEG00005011141)	uap1 (ENSMZEG00005011153)	DDR2 (ENSMZEG00005011178)	hsd17b7 (ENSMZEG00005011230)	serbp1a (ENSMZEG00005011260) #22	il12rb2 (ENSMZEG00005011617)	ENSMZEG00005011689 #23	ENSMZEG00005011775	ENSMZEG00005016289	ENSMZEG00005016339	ENSMZEG00005016400 #23	ENSMZEG00005016443	ENSMZEG00005017947	ENSMZEG00005018939	ENSMZEG00005018956	ENSMZEG00005018984	ENSMZEG00005018993	ENSMZEG00005019001	ENSMZEG00005019005	ENSMZEG00005019007
P. nyererei	MODERN SPECIES	351	POLR2E (ENSPNYG00000019797)	ENSPNYG00000019769	PIP5K1C (ENSPNYG00000019686)	rab11ba (ENSPNYG00000019644)	marchf2 (ENSPNYG00000019636)	ENSPNYG00000019611	stap2b (ENSPNYG00000019588)	fsd1 (ENSPNYG00000019516)	si:ch211-129c21.1 (ENSPNYG00000019488)	scamp4 (ENSPNYG00000019469)	chaf1a (ENSPNYG00000019436)	ubxn6 (ENSPNYG00000019420)	uap1 (ENSPNYG00000019385)	DDR2 (ENSPNYG00000019333)	hsd17b7 (ENSPNYG00000019301)	serbp1a (ENSPNYG00000019256) #22	il12rb2 (ENSPNYG00000019216)	ENSPNYG00000019186 #23	ENSPNYG00000018704	ENSPNYG00000018095	ENSPNYG00000017505	ENSPNYG00000016993	ENSPNYG00000016918	ENSPNYG00000016468	ENSPNYG00000016383	ENSPNYG00000016358	ENSPNYG00000015826	ENSPNYG00000015320
Lyretail cichlid	MODERN SPECIES	584		ENSNBRG00000023910	PIP5K1C (ENSNBRG00000023905)	rab11ba (ENSNBRG00000023898)	marchf2 (ENSNBRG00000023894)	ENSNBRG00000023885	stap2b (ENSNBRG00000023872)	fsd1 (ENSNBRG00000023844)	si:ch211-129c21.1 (ENSNBRG00000023832)	scamp4 (ENSNBRG00000023826)	chaf1a (ENSNBRG00000023818)	ubxn6 (ENSNBRG00000023812)	uap1 (ENSNBRG00000023806)	DDR2 (ENSNBRG00000023800)	hsd17b7 (ENSNBRG00000023795)	serbp1a (ENSNBRG00000023789) #22	il12rb2 (ENSNBRG00000023770)	ENSNBRG00000023756 #23	ENSNBRG00000023700	ENSNBRG00000023633
Nile tilapia	MODERN SPECIES	14	POLR2E (ENSONIG00000002519)	ENSONIG00000010276	PIP5K1C (ENSONIG00000002529)	rab11ba (ENSONIG00000028579)	march2 (ENSONIG00000033383)	ENSONIG00000002544	stap2b (ENSONIG00000002548)	fsd1 (ENSONIG00000002556)	si:ch211-129c21.1 (ENSONIG00000002563)	scamp4 (ENSONIG00000002570)	chaf1a (ENSONIG00000002573)	ubxn6 (ENSONIG00000042864)	uap1 (ENSONIG00000002583)	DDR2 (ENSONIG00000002591)	hsd17b7 (ENSONIG00000002597)	serbp1a (ENSONIG00000002600) #22	il12rb2 (ENSONIG00000002601)	ENSONIG00000042731 #23	ENSONIG00000039651	ENSONIG00000030382	ENSONIG00000035577	ENSONIG00000027758	ENSONIG00000038279	ENSONIG00000034197	ENSONIG00000038345	ENSONIG00000042533	ENSONIG00000034784	ENSONIG00000038678	ENSONIG00000043194	ENSONIG00000040000	ENSONIG00000031225
Midas cichlid	MODERN SPECIES	505	POLR2E (ENSACIG00000024371)	gpx4a (ENSACIG00000024372)	PIP5K1C (ENSACIG00000024373)	rab11ba (ENSACIG00000024374)	marchf2 (ENSACIG00000024375)	ENSACIG00000024376	stap2b (ENSACIG00000024377)	fsd1 (ENSACIG00000024378)	si:ch211-129c21.1 (ENSACIG00000024379)	scamp4 (ENSACIG00000024380)	chaf1a (ENSACIG00000024381)	ubxn6 (ENSACIG00000024382)	uap1 (ENSACIG00000024383)	DDR2 (ENSACIG00000024384)	hsd17b7 (ENSACIG00000024385)	serbp1a (ENSACIG00000024386) #22	il12rb2 (ENSACIG00000024387)	ENSACIG00000024388 #23	ENSACIG00000024389
Atherinomorphae	ANCESTRAL SPECIES	7	ENSGT00940000170739	ENSGT00940000165680.A	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00950000182879.a.b.b.a.b.a	ENSGT00950000182879.a.b.b.b.a	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01070000253866	ENSGT00740000116213	ENSGT00390000003464	ENSGT00940000156906.j.a.a
Cyprinodontiformes	ANCESTRAL SPECIES	7	ENSGT00940000161913.b	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00950000182879.a.b.b.b.b	ENSGT00950000182879.a.b.b.b.a.a	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01070000253866	ENSGT00740000116213	ENSGT00390000003464	ENSGT00940000156906.j.a.a
Aplocheiloidei	ANCESTRAL SPECIES	3	ENSGT00390000013841	ENSGT00940000165680.A	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00950000182879.a.b.b.b.a.a	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01070000253866	ENSGT00740000116213	ENSGT00390000003464	ENSGT00940000156906.j.a.a	ENSGT00940000158798
Mangrove rivulus	MODERN SPECIES	8	POLR2E (ENSKMAG00000005954)	PIP5K1C (ENSKMAG00000005999)	rab11ba (ENSKMAG00000006082)	marchf2 (ENSKMAG00000006111)	gpx4a (ENSKMAG00000006135)	ENSKMAG00000006170	ENSKMAG00000006179	fsd1 (ENSKMAG00000006206)	si:ch211-129c21.1 (ENSKMAG00000006271)	scamp4 (ENSKMAG00000006302)	chaf1a (ENSKMAG00000006384)	ubxn6 (ENSKMAG00000006466)	uap1 (ENSKMAG00000006502)	DDR2 (ENSKMAG00000006594)	hsd17b7 (ENSKMAG00000006671)	serbp1a (ENSKMAG00000006722) #22	ENSKMAG00000006752	il23r (ENSKMAG00000006774) #23	ENSKMAG00000006796	ENSKMAG00000006851	ENSKMAG00000007035	ENSKMAG00000007096	ENSKMAG00000007142	ENSKMAG00000007176	ENSKMAG00000007411	cyp2n13 (ENSKMAG00000007531)	cyp2n13 (ENSKMAG00000007588)	hook1 (ENSKMAG00000007644)	ENSKMAG00000007736	pfas (ENSKMAG00000007775)	IPO13 (ENSKMAG00000007869)
Turquoise killifish	MODERN SPECIES	1626	ENSNFUG00015008747	ENSNFUG00015008750	PIP5K1CA (ENSNFUG00015008755)	rab11ba (ENSNFUG00015008781)	ENSNFUG00015008809	MARCH2 (ENSNFUG00015008870)	ENSNFUG00015008879	FSD1 (ENSNFUG00015008936)	Nfu_g_1_016014 (ENSNFUG00015009142)	scamp4 (ENSNFUG00015009164)	CHAF1A (ENSNFUG00015009179)	UBXN6 (ENSNFUG00015009225)	uap1 (ENSNFUG00015009448)	DDR2 (ENSNFUG00015009566)	HSD17B7 (ENSNFUG00015010348)	SERBP1 (ENSNFUG00015010402) #22	il12rb2 (ENSNFUG00015010436)	ENSNFUG00015010453 #23	echdc2 (ENSNFUG00015010470)	zyg11 (ENSNFUG00015010519)	SELRC1 (ENSNFUG00015010621)	ralgps2 (ENSNFUG00015010658)	ANGPTL1 (ENSNFUG00015010904)	FAM20B (ENSNFUG00015010912)	ENSNFUG00015010922	ENSNFUG00015010982	scfd2 (ENSNFUG00015011763)	ENSNFUG00015011791	lnx1 (ENSNFUG00015011799)	ENSNFUG00015011842	GSX2 (ENSNFUG00015011845)
Cyprinodontoidei	ANCESTRAL SPECIES	10	ENSGT00940000161913.b	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00950000182879.a.b.b.a.b.a	ENSGT00950000182879.a.b.b.b.a.b.a	ENSGT00950000182879.a.b.b.b.a.a	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b.c.a	ENSGT00950000182879.a.b.a.a.b.a.g.b.c.b	ENSGT00950000182879.a.b.a.a.b.a.g.b.d	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT00390000003464
Poeciliinae	ANCESTRAL SPECIES	7	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659.l	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000158992	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00950000182879.a.b.b.b.b.c	ENSGT00950000182879.a.b.b.b.b.d.a	ENSGT00950000182879.a.b.b.b.a.b.a	ENSGT00950000182879.a.b.b.b.a.b.b	ENSGT00950000182879.a.b.b.b.a.a	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b.c.a	ENSGT00950000182879.a.b.a.a.b.a.g.b.c.b	ENSGT00950000182879.a.b.a.a.b.a.g.b.d	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600
Poecilia	ANCESTRAL SPECIES	1	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659.l	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000158992	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00950000182879.a.b.b.b.b.c	ENSGT00950000182879.a.b.b.b.b.d.a	ENSGT00950000182879.a.b.b.b.a.b.a	ENSGT00950000182879.a.b.b.b.a.b.b	ENSGT00950000182879.a.b.b.b.a.a	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b.c.a	ENSGT00950000182879.a.b.a.a.b.a.g.b.c.b	ENSGT00950000182879.a.b.a.a.b.a.g.b.d	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600
NAME_6	ANCESTRAL SPECIES	15	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659.l	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000158992	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00950000182879.a.b.b.b.b.c.b	ENSGT00950000182879.a.b.b.b.b.c.a	ENSGT00950000182879.a.b.b.b.b.d.a	ENSGT00950000182879.a.b.b.b.a.b.b	ENSGT00950000182879.a.b.b.b.a.a	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b.c.a	ENSGT00950000182879.a.b.a.a.b.a.g.b.c.b	ENSGT00950000182879.a.b.a.a.b.a.g.b.d	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600
Sailfin molly	MODERN SPECIES	356	marchf2 (ENSPLAG00000014223)	ENSPLAG00000014207	stap2b (ENSPLAG00000014188)	fsd1 (ENSPLAG00000014175)	si:ch211-129c21.1 (ENSPLAG00000014124)	scamp4 (ENSPLAG00000014115)	chaf1a (ENSPLAG00000014093)	ubxn6 (ENSPLAG00000014086)	ENSPLAG00000014080	ENSPLAG00000014016	ENSPLAG00000013998	ENSPLAG00000013987	uap1 (ENSPLAG00000013966)	DDR2 (ENSPLAG00000013923)	hsd17b7 (ENSPLAG00000013917)	serbp1a (ENSPLAG00000013912) #22	il12rb2 (ENSPLAG00000013899)	ENSPLAG00000013859 #23	ENSPLAG00000013825	ENSPLAG00000013799	ENSPLAG00000013748	ENSPLAG00000013145	ENSPLAG00000013110
Amazon molly	MODERN SPECIES	665	POLR2E (ENSPFOG00000005734)	ENSPFOG00000005793	PIP5K1C (ENSPFOG00000005815)	rab11ba (ENSPFOG00000006159)	marchf2 (ENSPFOG00000006218)	ENSPFOG00000006224	stap2b (ENSPFOG00000006279)	fsd1 (ENSPFOG00000006360)	si:ch211-129c21.1 (ENSPFOG00000006680)	scamp4 (ENSPFOG00000006940)	chaf1a (ENSPFOG00000006963)	ubxn6 (ENSPFOG00000007026)	uap1 (ENSPFOG00000024685)	DDR2 (ENSPFOG00000007058)	hsd17b7 (ENSPFOG00000007589)	serbp1a (ENSPFOG00000007643) #22	il12rb2 (ENSPFOG00000007735)	il23r (ENSPFOG00000024170) #23
Guppy	MODERN SPECIES	456	GPX4 (ENSPREG00000006468)	PIP5K1C (ENSPREG00000006402)	rab11ba (ENSPREG00000006357)	marchf2 (ENSPREG00000006351)	ENSPREG00000006336	stap2b (ENSPREG00000006310)	fsd1 (ENSPREG00000006259)	si:ch211-129c21.1 (ENSPREG00000006188)	scamp4 (ENSPREG00000006161)	chaf1a (ENSPREG00000006130)	ubxn6 (ENSPREG00000006078)	DNAH8 (ENSPREG00000005886)	uap1 (ENSPREG00000005807)	DDR2 (ENSPREG00000005719)	hsd17b7 (ENSPREG00000005679)	serbp1a (ENSPREG00000005659) #22	il12rb2 (ENSPREG00000005625)	ENSPREG00000005591 #23	ENSPREG00000005561	ENSPREG00000005547	ENSPREG00000005372	ENSPREG00000004573	ENSPREG00000004077	ENSPREG00000004024	cyp2ad2 (ENSPREG00000003998)	cyp2n13 (ENSPREG00000003454)	cyp2n13 (ENSPREG00000002902)	cyp2n13 (ENSPREG00000002812)	cyp2n13 (ENSPREG00000002797)	hook1 (ENSPREG00000002749)	ENSPREG00000002729
Platyfish	MODERN SPECIES	23	marchf2 (ENSXMAG00000026178)	ENSXMAG00000024840	stap2b (ENSXMAG00000011916)	fsd1 (ENSXMAG00000011902)	si:ch211-129c21.1 (ENSXMAG00000011886)	scamp4 (ENSXMAG00000011870)	chaf1a (ENSXMAG00000011864)	ubxn6 (ENSXMAG00000011842)	ENSXMAG00000021090	ENSXMAG00000024886	ENSXMAG00000027562	ENSXMAG00000023540	uap1 (ENSXMAG00000011735)	DDR2 (ENSXMAG00000011693)	hsd17b7 (ENSXMAG00000011686)	serbp1a (ENSXMAG00000011677) #22	il12rb2 (ENSXMAG00000011674)	ENSXMAG00000011673 #23	ENSXMAG00000011672	ENSXMAG00000011668	ENSXMAG00000011671	ENSXMAG00000011670	ENSXMAG00000028094	cyp2ad2 (ENSXMAG00000027480)	cyp2n13 (ENSXMAG00000024113)	cyp2n13 (ENSXMAG00000011645)	cyp2n13 (ENSXMAG00000024505)	hook1 (ENSXMAG00000011589)	ENSXMAG00000011585	pfas (ENSXMAG00000011539)	IPO13 (ENSXMAG00000011485)
NAME_4	ANCESTRAL SPECIES	110	ENSGT00940000161913.b	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00950000182879.a.b.b.a.b.a
Mummichog	MODERN SPECIES	2290	PIP5K1C (ENSFHEG00000022625)	rab11ba (ENSFHEG00000022642)	marchf2 (ENSFHEG00000022646)	ENSFHEG00000022676	stap2b (ENSFHEG00000022718)	fsd1 (ENSFHEG00000022728)	si:ch211-129c21.1 (ENSFHEG00000022731)	scamp4 (ENSFHEG00000022755)	ENSFHEG00000022769	chaf1a (ENSFHEG00000022780)	ubxn6 (ENSFHEG00000022786)	uap1 (ENSFHEG00000022839)	DDR2 (ENSFHEG00000022871)	ENSFHEG00000022888	hsd17b7 (ENSFHEG00000023222)	serbp1a (ENSFHEG00000001151) #22	il12rb2 (ENSFHEG00000001163)	ENSFHEG00000001169 #23
Sheepshead minnow	MODERN SPECIES	995												ubxn6 (ENSCVAG00000010720)	uap1 (ENSCVAG00000010709)	DDR2 (ENSCVAG00000010641)	hsd17b7 (ENSCVAG00000000292)	serbp1a (ENSCVAG00000010534) #22	il12rb2 (ENSCVAG00000010531)	ENSCVAG00000010522 #23	ENSCVAG00000010513	ENSCVAG00000010504	ENSCVAG00000010442	ENSCVAG00000010160	ENSCVAG00000009827
Oryzias	ANCESTRAL SPECIES	5	ENSGT00390000013841	ENSGT00940000165680.A	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00950000182879.a.b.b.b.a.c.a	ENSGT00950000182879.a.b.b.b.a.c.b	ENSGT00950000182879.a.b.b.b.a.d	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b.f	ENSGT00950000182879.a.b.a.a.b.a.g.b.e	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01070000253866	ENSGT00740000116213
Oryzias_b	ANCESTRAL SPECIES	26	ENSGT00390000013841	ENSGT00940000165680.A	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00950000182879.a.b.b.b.a.c.a	ENSGT00950000182879.a.b.b.b.a.c.b	ENSGT00950000182879.a.b.b.b.a.d	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b.f	ENSGT00950000182879.a.b.a.a.b.a.g.b.e	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT00740000116213	ENSGT00390000003464
Javanese ricefish	MODERN SPECIES	18	POLR2E (ENSOJAG00000012258)	ENSOJAG00000012200	PIP5K1C (ENSOJAG00000011858)	ENSOJAG00000011713	marchf2 (ENSOJAG00000011638)	ENSOJAG00000011571	ENSOJAG00000011563	fsd1 (ENSOJAG00000011289)	si:ch211-129c21.1 (ENSOJAG00000011106)	scamp4 (ENSOJAG00000011088)	chaf1a (ENSOJAG00000010834)	ubxn6 (ENSOJAG00000010684)	uap1 (ENSOJAG00000010356)	DDR2 (ENSOJAG00000010035)	hsd17b7 (ENSOJAG00000009979)	serbp1a (ENSOJAG00000009965) #22	il12rb2 (ENSOJAG00000009941)	ENSOJAG00000009859 #23	ENSOJAG00000009646	ENSOJAG00000009413	cyp2ad2 (ENSOJAG00000009343)	cyp2n13 (ENSOJAG00000009127)	cyp2n13 (ENSOJAG00000009095)	hook1 (ENSOJAG00000008708)	ENSOJAG00000008627	IPO13 (ENSOJAG00000006797)	ENSOJAG00000006724	mmachc (ENSOJAG00000006712)	ENSOJAG00000006696	echdc2 (ENSOJAG00000006378)	zyg11 (ENSOJAG00000006104)
Indian medaka	MODERN SPECIES	13	POLR2E (ENSOMEG00000002709)	ENSOMEG00000002677	PIP5K1C (ENSOMEG00000002623)	rab11ba (ENSOMEG00000002581)	marchf2 (ENSOMEG00000002567)	ENSOMEG00000002562	ENSOMEG00000002541	fsd1 (ENSOMEG00000002522)	si:ch211-129c21.1 (ENSOMEG00000002494)	scamp4 (ENSOMEG00000002484)	chaf1a (ENSOMEG00000002469)	ubxn6 (ENSOMEG00000002453)	uap1 (ENSOMEG00000000042)	DDR2 (ENSOMEG00000002398)	hsd17b7 (ENSOMEG00000002364)	serbp1a (ENSOMEG00000002349) #22	il12rb2 (ENSOMEG00000002340)	ENSOMEG00000002325 #23	ENSOMEG00000002314	ENSOMEG00000002301	ENSOMEG00000002282	ENSOMEG00000002266	ENSOMEG00000002255	ENSOMEG00000002241	cyp2ad2 (ENSOMEG00000002207)	cyp2n13 (ENSOMEG00000002182)	cyp2n13 (ENSOMEG00000000783)	ENSOMEG00000002062	hook1 (ENSOMEG00000002050)	ENSOMEG00000001951	pfas (ENSOMEG00000002001)
Oryzias_a	ANCESTRAL SPECIES	24	ENSGT00390000013841	ENSGT00940000165680.A	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00950000182879.a.b.b.b.a.c.a	ENSGT00950000182879.a.b.b.b.a.c.b	ENSGT00950000182879.a.b.b.b.a.d	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b.f	ENSGT00950000182879.a.b.a.a.b.a.g.b.e	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01070000253866	ENSGT00740000116213
Chinese medaka	MODERN SPECIES	95	amotl2a (ENSOSIG00000017883)	tjp3 (ENSOSIG00000017907)	ARHGAP45 (ENSOSIG00000017940)	rab11ba (ENSOSIG00000018167)	marchf2 (ENSOSIG00000018172)	ENSOSIG00000018181	ENSOSIG00000018188	fsd1 (ENSOSIG00000018201)	si:ch211-129c21.1 (ENSOSIG00000018282)	scamp4 (ENSOSIG00000018305)	chaf1a (ENSOSIG00000018315)	ubxn6 (ENSOSIG00000018409)	uap1 (ENSOSIG00000018439)	DDR2 (ENSOSIG00000018474)	hsd17b7 (ENSOSIG00000018658)	serbp1a (ENSOSIG00000018661) #22	il12rb2 (ENSOSIG00000018664)	ENSOSIG00000018667 #23	cyp2ad3 (ENSOSIG00000018672)	cyp2p6 (ENSOSIG00000000158)	cyp2n13 (ENSOSIG00000000503)	hook1 (ENSOSIG00000001083)	ENSOSIG00000003600	pfas (ENSOSIG00000003624)	IPO13 (ENSOSIG00000004054)	ENSOSIG00000004343
Japanese Medaka HdrR	MODERN SPECIES	18	POLR2E (ENSORLG00000015346)	ENSORLG00000015339	PIP5K1C (ENSORLG00000015327)	rab11ba (ENSORLG00000015307)	marchf2 (ENSORLG00000015303)	ENSORLG00000015284	ENSORLG00000026413	fsd1 (ENSORLG00000015253)	si:ch211-129c21.1 (ENSORLG00000015228)	scamp4 (ENSORLG00000029740)	chaf1a (ENSORLG00000015193)	ubxn6 (ENSORLG00000015178)	uap1 (ENSORLG00000015154)	DDR2 (ENSORLG00000015116)	hsd17b7 (ENSORLG00000015071)	serbp1a (ENSORLG00000015043) #22	il12rb2 (ENSORLG00000015026)	ENSORLG00000027349 #23	cyp2p3 (ENSORLG00000015011)	ENSORLG00000014936	ENSORLG00000028232	cyp2ad2 (ENSORLG00000014913)	cyp2n13 (ENSORLG00000014891)	cyp2n13 (ENSORLG00000014869)	cyp2n13 (ENSORLG00000021869)	hook1 (ENSORLG00000014822)	ENSORLG00000014802	pfas (ENSORLG00000014791)	IPO13 (ENSORLG00000014748)	ENSORLG00000014694	ENSORLG00000027169
Percomorphaceae_C	ANCESTRAL SPECIES	8	ENSGT00940000159258.d	ENSGT00940000163126.a.b.g.b	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.g.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00950000182879.a.b.b.a.b	ENSGT00950000182879.a.b.b.b.a	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01070000253866	ENSGT00740000116213	ENSGT00390000003464	ENSGT00940000156906.j.a.a
Eupercaria	ANCESTRAL SPECIES	8	ENSGT00940000161913.b	ENSGT00940000165680.A	ENSGT00940000159258.d	ENSGT00940000163126.a.b.g.b	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00950000182879.a.b.b.a.b	ENSGT00950000182879.a.b.b.b.a	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01070000253866	ENSGT00740000116213	ENSGT00390000003464	ENSGT00940000156906.j.a.a
Tetraodontidae	ANCESTRAL SPECIES	5	ENSGT00940000161913.b	ENSGT00940000165680.A	ENSGT00940000159258.d	ENSGT00940000163126.a.b.h	ENSGT00940000158995.a	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000160836.d.b.b	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00950000182879.a.b.b.a.b	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000167690	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT00390000003464	ENSGT00940000156906.j.a.a	ENSGT00940000158798	ENSGT00530000063187.B.c	ENSGT00390000004835
Fugu	MODERN SPECIES	12	PIP5K1C (ENSTRUG00000018248)	ENSTRUG00000022029	marchf2 (ENSTRUG00000030753)	ENSTRUG00000021614	stap2b (ENSTRUG00000018287)	fsd1 (ENSTRUG00000018292)	ENSTRUG00000025996	si:ch211-129c21.1 (ENSTRUG00000025380)	scamp4 (ENSTRUG00000018301)	chaf1a (ENSTRUG00000018302)	ubxn6 (ENSTRUG00000018309)	fmo (ENSTRUG00000018321)	uap1 (ENSTRUG00000018335)	DDR2 (ENSTRUG00000018340)	hsd17b7 (ENSTRUG00000018364)	serbp1a (ENSTRUG00000018368) #22	ENSTRUG00000030488	ENSTRUG00000018372 #23	cyp2p6 (ENSTRUG00000018373)	cyp2ad2 (ENSTRUG00000020610)	cyp2n13 (ENSTRUG00000018407)	cyp2n13 (ENSTRUG00000018418)	ENSTRUG00000018419	ENSTRUG00000028289	pfas (ENSTRUG00000018433)	IPO13 (ENSTRUG00000018436)	mmachc (ENSTRUG00000018443)	ENSTRUG00000018444	echdc2 (ENSTRUG00000018445)	zyg11 (ENSTRUG00000018453)	coa7 (ENSTRUG00000018459)
Tetraodon	MODERN SPECIES		ENSTNIG00000013186	PIP5K1C (ENSTNIG00000013185)	ENSTNIG00000013184	marchf2 (ENSTNIG00000013183)	ENSTNIG00000013182	ENSTNIG00000013181	fsd1 (ENSTNIG00000013180)	si:ch211-129c21.1 (ENSTNIG00000013179)	scamp4 (ENSTNIG00000013178)	chaf1a (ENSTNIG00000013177)	ubxn6 (ENSTNIG00000013176)	ENSTNIG00000013175	uap1 (ENSTNIG00000013174)	DDR2 (ENSTNIG00000013173)	hsd17b7 (ENSTNIG00000013172)	serbp1a (ENSTNIG00000013171) #22	il12rb2 (ENSTNIG00000001805)	ENSTNIG00000001804 #23	ENSTNIG00000000727	ENSTNIG00000001576	ENSTNIG00000013170	cyp2ad2 (ENSTNIG00000013169)	cyp2n13 (ENSTNIG00000010866)	cyp2n13 (ENSTNIG00000010865)	ENSTNIG00000010864	ENSTNIG00000010863	pfas (ENSTNIG00000010862)	IPO13 (ENSTNIG00000010861)	mmachc (ENSTNIG00000010860)	ENSTNIG00000010859	echdc2 (ENSTNIG00000010858)
Eupecaria_A	ANCESTRAL SPECIES	11	ENSGT00940000165680.A	ENSGT00940000159258.d	ENSGT00940000163126.a.b.g.b	ENSGT00940000158995.a	ENSGT00940000163126.a.b.g.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00950000182879.a.b.b.a.b	ENSGT00950000182879.a.b.b.b.a	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01070000253866	ENSGT00740000116213	ENSGT00390000003464	ENSGT00940000156906.j.a.a
Ballan wrasse	MODERN SPECIES	497				rab11ba (ENSLBEG00000006087)	marchf2 (ENSLBEG00000006033)	ENSLBEG00000005981	ENSLBEG00000005932	fsd1 (ENSLBEG00000005871)	si:ch211-129c21.1 (ENSLBEG00000005828)	scamp4 (ENSLBEG00000005803)	chaf1a (ENSLBEG00000005685)	ubxn6 (ENSLBEG00000005614)	uap1 (ENSLBEG00000005520)	DDR2 (ENSLBEG00000005422)	hsd17b7 (ENSLBEG00000005341)	serbp1a (ENSLBEG00000005289) #22	il12rb2 (ENSLBEG00000005259)	ENSLBEG00000005222 #23	ENSLBEG00000005207	ENSLBEG00000004771	ENSLBEG00000004212	ENSLBEG00000003658
Eupecaria_B	ANCESTRAL SPECIES	10	ENSGT00940000161913.b	ENSGT00940000165680.A	ENSGT00940000159258.d	ENSGT00940000163126.a.b.g.b	ENSGT00940000158995.a	ENSGT00940000163126.a.b.g.a	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00950000182879.a.b.b.a.b	ENSGT00950000182879.a.b.b.b.a	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01070000253866	ENSGT00740000116213	ENSGT00390000003464	ENSGT00940000156906.j.a.a
Perciformes	ANCESTRAL SPECIES	8	ENSGT00940000165680.A	ENSGT00940000159258.d	ENSGT00940000163126.a.b.g.b	ENSGT00940000158995.a	ENSGT00940000163126.a.b.g.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00950000182879.a.b.b.a.b	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01070000253866	ENSGT00740000116213	ENSGT00390000003464	ENSGT00940000156906.j.a.a	ENSGT00940000158798
Cottioidei	ANCESTRAL SPECIES	5	ENSGT00390000013841	ENSGT00940000165680.A	ENSGT00940000159258.d	ENSGT00940000163126.a.b.g.b	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00950000182879.a.b.b.a.b	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT00390000003464	ENSGT00940000156906.j.a.a	ENSGT00940000158798	ENSGT00530000063187.B.c	ENSGT00390000004835	ENSGT00940000154079.a
Lumpfish	MODERN SPECIES	19	POLR2E (ENSCLMG00005007020)	ENSCLMG00005007028	PIP5K1C (ENSCLMG00005007030)	ENSCLMG00005007178	marchf2 (ENSCLMG00005007179)	ENSCLMG00005007180	stap2b (ENSCLMG00005007183)	fsd1 (ENSCLMG00005007185)	si:ch211-129c21.1 (ENSCLMG00005007188)	scamp4 (ENSCLMG00005007191)	chaf1a (ENSCLMG00005007194)	ubxn6 (ENSCLMG00005007308)	uap1 (ENSCLMG00005007686)	DDR2 (ENSCLMG00005007715)	hsd17b7 (ENSCLMG00005008184)	serbp1a (ENSCLMG00005008195) #22	il12rb2 (ENSCLMG00005008196)	ENSCLMG00005008198 #23	cyp2p6 (ENSCLMG00005008204)	cyp2ad2 (ENSCLMG00005008459)	cyp2n13 (ENSCLMG00005008735)	NEK1 (ENSCLMG00005010333)	sh3rf1 (ENSCLMG00005010348)	cbr4 (ENSCLMG00005010349)	PALLD (ENSCLMG00005010353)	anapc4 (ENSCLMG00005010527)	slain2 (ENSCLMG00005012046)	SLC10A4 (ENSCLMG00005012048)	zar1 (ENSCLMG00005012054)	fryl (ENSCLMG00005012102)	dcun1d4 (ENSCLMG00005013592)
Stickleback	MODERN SPECIES	8	CARMIL3 (ENSGACG00000014346)	ENSGACG00000014359	ENSGACG00000014362	ENSGACG00000014368	ENSGACG00000014370	ENSGACG00000014374	fsd1 (ENSGACG00000014380)	ENSGACG00000014402	si:ch211-129c21.1 (ENSGACG00000014404)	scamp4 (ENSGACG00000014412)	chaf1a (ENSGACG00000014428)	ENSGACG00000014430	ubxn6 (ENSGACG00000014431)	uap1 (ENSGACG00000014445)	DDR2 (ENSGACG00000014457)	serbp1a (ENSGACG00000014467) #22	il12rb2 (ENSGACG00000014528)	cyp2p7 (ENSGACG00000014531)	cyp2n13 (ENSGACG00000014535)	hook1 (ENSGACG00000014545)	IPO13 (ENSGACG00000014562)	mmachc (ENSGACG00000014565)	echdc2 (ENSGACG00000014569)	zyg11 (ENSGACG00000014574)	coa7 (ENSGACG00000014584)	ralgps2 (ENSGACG00000014587)	angptl1a (ENSGACG00000014590)	fam20b (ENSGACG00000014604)	jun (ENSGACG00000014608)	ENSGACG00000014612	prdx6 (ENSGACG00000014613)
Perciformes_a	ANCESTRAL SPECIES	6	ENSGT00390000013841	ENSGT00940000161913.b	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.g.a	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00950000182879.a.b.b.a.b	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01070000253866	ENSGT00740000116213	ENSGT00390000003464	ENSGT00940000156906.j.a.a	ENSGT00940000158798
Channel bull blenny	MODERN SPECIES	18	POLR2E (ENSCGOG00000008693)	gpx4b (ENSCGOG00000008676)	PIP5K1C (ENSCGOG00000006876)	rab11ba (ENSCGOG00000006718)	marchf2 (ENSCGOG00000006710)	ENSCGOG00000006672	stap2b (ENSCGOG00000006669)	fsd1 (ENSCGOG00000006417)	si:ch211-129c21.1 (ENSCGOG00000006397)	scamp4 (ENSCGOG00000006393)	chaf1a (ENSCGOG00000006388)	ubxn6 (ENSCGOG00000006305)	uap1 (ENSCGOG00000006032)	DDR2 (ENSCGOG00000005853)	hsd17b7 (ENSCGOG00000005828)	serbp1a (ENSCGOG00000005820) #22	il12rb2 (ENSCGOG00000005818)	ENSCGOG00000005804 #23	ENSCGOG00000005746	cyp2ad2 (ENSCGOG00000005139)	ENSCGOG00000005038	cyp2n13 (ENSCGOG00000004970)	cyp2n13 (ENSCGOG00000004856)	cyp2n13 (ENSCGOG00000004847)	hook1 (ENSCGOG00000004684)	ENSCGOG00000004676	pfas (ENSCGOG00000003561)	IPO13 (ENSCGOG00000003263)	ENSCGOG00000003228	ENSCGOG00000003226	mmachc (ENSCGOG00000003225)
Pike perch	MODERN SPECIES	34	POLR2E (ENSSLUG00000015773)	gpx4b (ENSSLUG00000001474)	PIP5K1C (ENSSLUG00000001546)	ENSSLUG00000001628	marchf2 (ENSSLUG00000001696)	ENSSLUG00000001708	stap2b (ENSSLUG00000001757)	fsd1 (ENSSLUG00000001801)	si:ch211-129c21.1 (ENSSLUG00000001831)	scamp4 (ENSSLUG00000001841)	chaf1a (ENSSLUG00000001864)	ubxn6 (ENSSLUG00000001897)	uap1 (ENSSLUG00000001973)	DDR2 (ENSSLUG00000002178)	hsd17b7 (ENSSLUG00000002265)	serbp1a (ENSSLUG00000002274) #22	il12rb2 (ENSSLUG00000002283)	il23r (ENSSLUG00000002297) #23	cyp2p6 (ENSSLUG00000002333)	cyp2ad2 (ENSSLUG00000002615)	cyp2n13 (ENSSLUG00000002946)	hook1 (ENSSLUG00000003437)	cyp2n13 (ENSSLUG00000003456)	hook1 (ENSSLUG00000003670)	ENSSLUG00000005331	pfas (ENSSLUG00000005485)	IPO13 (ENSSLUG00000007502)	ENSSLUG00000008027	mmachc (ENSSLUG00000008035)	ENSSLUG00000008039	echdc2 (ENSSLUG00000008074)
Eupecaria_C	ANCESTRAL SPECIES	4	ENSGT00390000013841	ENSGT00940000165680.A	ENSGT00940000159258.d	ENSGT00940000163126.a.b.g.b	ENSGT00940000158995.a	ENSGT00940000163126.a.b.g.a	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00950000182879.a.b.b.a.b	ENSGT00950000182879.a.b.b.b.a	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01070000253866	ENSGT00740000116213	ENSGT00390000003464	ENSGT00940000156906.j.a.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	3	ENSGT00390000013841	ENSGT00940000165680.A	ENSGT00940000159258.d	ENSGT00940000163126.a.b.g.b	ENSGT00940000158995.a	ENSGT00940000163126.a.b.g.a	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00950000182879.a.b.b.a.b	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01070000253866	ENSGT00740000116213	ENSGT00390000003464	ENSGT00940000156906.j.a.a	ENSGT00940000158798
European seabass	MODERN SPECIES	17	ENSDLAG00005030390	ENSDLAG00005016577	ENSDLAG00005028338	ENSDLAG00005027338	ENSDLAG00005030419	ENSDLAG00005027138	ENSDLAG00005017525	si:ch211-129c21.1 (ENSDLAG00005017682)	scamp4 (ENSDLAG00005026827)	chaf1a (ENSDLAG00005017698)	ubxn6 (ENSDLAG00005017721)	uap1 (ENSDLAG00005017768)	ENSDLAG00005030851	ENSDLAG00005033891	hsd17b7 (ENSDLAG00005018188)	serbp1a (ENSDLAG00005018281) #22	il12rb2 (ENSDLAG00005018307)	ENSDLAG00005018334 #23	ENSDLAG00005018361	ENSDLAG00005018472	ENSDLAG00005016291	ENSDLAG00005019168	ENSDLAG00005029009	ENSDLAG00005018196	ENSDLAG00005030565	cyp2n13 (ENSDLAG00005031306)	cyp2n13 (ENSDLAG00005018797)	hook1 (ENSDLAG00005019006)	cyp2n13 (ENSDLAG00005011173)	cyp2n13 (ENSDLAG00005018802)	ENSDLAG00005027600
Large yellow croaker	MODERN SPECIES	489	ENSLCRG00005010838	ENSLCRG00005010836	PIP5K1C (ENSLCRG00005010821)	ENSLCRG00005010771	marchf2 (ENSLCRG00005010768)	ENSLCRG00005010733	stap2b (ENSLCRG00005010729)	fsd1 (ENSLCRG00005010479)	si:ch211-129c21.1 (ENSLCRG00005010474)	scamp4 (ENSLCRG00005010467)	chaf1a (ENSLCRG00005010464)	ubxn6 (ENSLCRG00005010461)	uap1 (ENSLCRG00005009993)	DDR2 (ENSLCRG00005009764)	hsd17b7 (ENSLCRG00005009755)	serbp1a (ENSLCRG00005009754) #22	il12rb2 (ENSLCRG00005009750)	ENSLCRG00005009743 #23	cyp2p6 (ENSLCRG00005009714)	cyp2ad2 (ENSLCRG00005009712)	cyp2n13 (ENSLCRG00005009708)	cyp2n13 (ENSLCRG00005009523)	cyp2n13 (ENSLCRG00005009514)	ENSLCRG00005009497	hook1 (ENSLCRG00005008409)	ENSLCRG00005008387	pfas (ENSLCRG00005008379)	IPO13 (ENSLCRG00005007800)	ENSLCRG00005007786	ENSLCRG00005007785	mmachc (ENSLCRG00005007784)
Gilthead seabream	MODERN SPECIES	2	POLR2E (ENSSAUG00010002703)	GPX4a (ENSSAUG00010002689)	PIP5K1C (ENSSAUG00010002590)	ENSSAUG00010002528	marchf2 (ENSSAUG00010002517)	ENSSAUG00010002477	stap2b (ENSSAUG00010002471)	fsd1 (ENSSAUG00010001434)	si:ch211-129c21.1 (ENSSAUG00010001339)	scamp4 (ENSSAUG00010001324)	chaf1a (ENSSAUG00010001309)	ubxn6 (ENSSAUG00010013663)	uap1 (ENSSAUG00010013654)	DDR2 (ENSSAUG00010013526)	hsd17b7 (ENSSAUG00010013522)	serbp1a (ENSSAUG00010013520) #22	il12rb2 (ENSSAUG00010013514)	ENSSAUG00010013509 #23	ENSSAUG00010013489	ENSSAUG00010013483	cyp2ad2 (ENSSAUG00010013482)	cyp2n13 (ENSSAUG00010013472)	cyp2n13 (ENSSAUG00010013461)	hook1 (ENSSAUG00010013403)	ENSSAUG00010013397	pfas (ENSSAUG00010011449)	IPO13 (ENSSAUG00010009758)	ENSSAUG00010009730	ENSSAUG00010009728	mmachc (ENSSAUG00010009726)	ENSSAUG00010009725
Percomorphaceae_D	ANCESTRAL SPECIES	8	ENSGT00940000161913.b	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.g.a	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00950000182879.a.b.b.a.b	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01070000253866	ENSGT00740000116213	ENSGT00390000003464	ENSGT00940000156906.j.a.a	ENSGT00940000158798
Anabantaria	ANCESTRAL SPECIES	7	ENSGT00940000165680.A	ENSGT00940000170739	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.g.a	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00950000182879.a.b.b.a.b	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01070000253866	ENSGT00740000116213	ENSGT00390000003464	ENSGT00940000156906.j.a.a	ENSGT00940000158798
Anabantoidei	ANCESTRAL SPECIES	6	ENSGT00390000013841	ENSGT00940000165680.A	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.g.a	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00950000182879.a.b.b.a.a.a.b.a	ENSGT00950000182879.a.b.b.a.a.b.a.a	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01070000253866	ENSGT00740000116213	ENSGT00390000003464	ENSGT00940000156906.j.a.a
Climbing perch	MODERN SPECIES	17	ENSATEG00000023754	ENSATEG00000026865	ENSATEG00000023737	ENSATEG00000026681	ENSATEG00000029113	ENSATEG00000023725	ENSATEG00000023717	ENSATEG00000023710	si:ch211-129c21.1 (ENSATEG00000023698)	scamp4 (ENSATEG00000026734)	chaf1a (ENSATEG00000023683)	ubxn6 (ENSATEG00000023678)	uap1 (ENSATEG00000023663)	ENSATEG00000023653	hsd17b7 (ENSATEG00000023642)	serbp1a (ENSATEG00000023637) #22	il12rb2 (ENSATEG00000023631)	il23r (ENSATEG00000023627) #23	ENSATEG00000025483	ENSATEG00000023563	ENSATEG00000029722	ENSATEG00000027477	ENSATEG00000025943	ENSATEG00000028222	ENSATEG00000029478	ENSATEG00000026906	ENSATEG00000026125	ENSATEG00000027146	ENSATEG00000030058	ENSATEG00000027416	ENSATEG00000028508
Siamese fighting fish	MODERN SPECIES	15	faslg (ENSBSLG00000010777)	si:dkey-86e18.1 (ENSBSLG00000010735)	ENSBSLG00000010717	ENSBSLG00000010693	ENSBSLG00000010618	jun (ENSBSLG00000010589)	prdx6 (ENSBSLG00000010569)	plpp6 (ENSBSLG00000010567)	ENSBSLG00000010370	si:dkey-239i20.4 (ENSBSLG00000010357)	ENSBSLG00000010355	ENSBSLG00000010345	ENSBSLG00000010265	uap1 (ENSBSLG00000009778)	DDR2 (ENSBSLG00000009369)	serbp1a (ENSBSLG00000009337) #22	il12rb2 (ENSBSLG00000009299)	ENSBSLG00000009271 #23	ENSBSLG00000009181	ENSBSLG00000008982	ENSBSLG00000008924	ENSBSLG00000008296	ENSBSLG00000002932	ENSBSLG00000002883	ENSBSLG00000002861	ENSBSLG00000002853	ENSBSLG00000002688	ENSBSLG00000002531	ENSBSLG00000002330	cyp2n13 (ENSBSLG00000002192)	ubxn6 (ENSBSLG00000002128)
Zig-zag eel	MODERN SPECIES	18	ENSMAMG00000018612	ENSMAMG00000027280	ENSMAMG00000018576	ENSMAMG00000018556	ENSMAMG00000018541	ENSMAMG00000018533	ENSMAMG00000027773	ENSMAMG00000018455	si:ch211-129c21.1 (ENSMAMG00000018435)	scamp4 (ENSMAMG00000025900)	chaf1a (ENSMAMG00000018408)	ubxn6 (ENSMAMG00000018397)	uap1 (ENSMAMG00000018365)	ENSMAMG00000018316	hsd17b7 (ENSMAMG00000018239)	serbp1a (ENSMAMG00000018229) #22	il12rb2 (ENSMAMG00000018218)	il23r (ENSMAMG00000018157) #23	ENSMAMG00000018106	ENSMAMG00000024287	cyp2ad2 (ENSMAMG00000017916)	cyp2n13 (ENSMAMG00000017517)	cyp2n13 (ENSMAMG00000017505)	hook1 (ENSMAMG00000017421)	ENSMAMG00000017410	pfas (ENSMAMG00000017333)	ENSMAMG00000017290	ENSMAMG00000017282	ENSMAMG00000017265	ENSMAMG00000017259	ENSMAMG00000017236
Carangaria	ANCESTRAL SPECIES	7	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000163126.a.b.g.b	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.g.a	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00950000182879.a.b.b.a.b	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01070000253866	ENSGT00740000116213	ENSGT00390000003464	ENSGT00940000156906.j.a.a	ENSGT00940000158798
Carangaria_A	ANCESTRAL SPECIES	3	ENSGT00940000161913.b	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.g.a	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00950000182879.a.b.b.a.b	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01070000253866	ENSGT00740000116213	ENSGT00390000003464	ENSGT00940000156906.j.a.a	ENSGT00940000158798
Seriola	ANCESTRAL SPECIES	21	ENSGT00390000013841	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.g.a	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00950000182879.a.b.b.a.b	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01070000253866	ENSGT00740000116213	ENSGT00390000003464	ENSGT00940000156906.j.a.a	ENSGT00940000158798
Yellowtail amberjack	MODERN SPECIES	2677	POLR2E (ENSSLDG00000004965)	gpx4a (ENSSLDG00000005019)	PIP5K1C (ENSSLDG00000005123)	rab11ba (ENSSLDG00000005221)	marchf2 (ENSSLDG00000005251)	ENSSLDG00000005275	stap2b (ENSSLDG00000005300)	fsd1 (ENSSLDG00000005330)	si:ch211-129c21.1 (ENSSLDG00000005355)	scamp4 (ENSSLDG00000005492)	chaf1a (ENSSLDG00000005531)	ubxn6 (ENSSLDG00000005723)	uap1 (ENSSLDG00000005767)	DDR2 (ENSSLDG00000005869)	hsd17b7 (ENSSLDG00000005949)	serbp1a (ENSSLDG00000005983) #22	ENSSLDG00000006070 #23	cyp2p6 (ENSSLDG00000006265)	ENSSLDG00000006282	cyp2n13 (ENSSLDG00000006366)	cyp2n13 (ENSSLDG00000006741)	hook1 (ENSSLDG00000007232)	ENSSLDG00000007294	pfas (ENSSLDG00000007323)	IPO13 (ENSSLDG00000007412)	ENSSLDG00000007468	ENSSLDG00000007488	mmachc (ENSSLDG00000007508)	ENSSLDG00000007518	echdc2 (ENSSLDG00000007544)	zyg11 (ENSSLDG00000007655)
Greater amberjack	MODERN SPECIES	110	POLR2E (ENSSDUG00000003352)	gpx4a (ENSSDUG00000003134)	PIP5K1C (ENSSDUG00000003016)	rab11ba (ENSSDUG00000002965)	marchf2 (ENSSDUG00000002943)	ENSSDUG00000002934	ENSSDUG00000002896	fsd1 (ENSSDUG00000002877)	si:ch211-129c21.1 (ENSSDUG00000002808)	scamp4 (ENSSDUG00000002782)	chaf1a (ENSSDUG00000002692)	ubxn6 (ENSSDUG00000002654)	uap1 (ENSSDUG00000002609)	DDR2 (ENSSDUG00000002557)	hsd17b7 (ENSSDUG00000002521)	serbp1a (ENSSDUG00000002481) #22	il12rb2 (ENSSDUG00000002457)	ENSSDUG00000002420 #23	cyp2p6 (ENSSDUG00000002402)	cyp2ad2 (ENSSDUG00000002386)	cyp2n13 (ENSSDUG00000001817)	cyp2n13 (ENSSDUG00000001630)	hook1 (ENSSDUG00000001523)	ENSSDUG00000001487	pfas (ENSSDUG00000001342)	IPO13 (ENSSDUG00000001233)	ENSSDUG00000001213	ENSSDUG00000001199	mmachc (ENSSDUG00000001165)	ENSSDUG00000001150	echdc2 (ENSSDUG00000001138)
Barramundi perch	MODERN SPECIES	117	POLR2E (ENSLCAG00010009937)	GPX4 (ENSLCAG00010009902)	PIP5K1C (ENSLCAG00010009759)	ENSLCAG00010009646	marchf2 (ENSLCAG00010009622)	ENSLCAG00010009549	ENSLCAG00010009530	fsd1 (ENSLCAG00010009482)	si:ch211-129c21.1 (ENSLCAG00010009466)	scamp4 (ENSLCAG00010009459)	chaf1a (ENSLCAG00010009454)	ubxn6 (ENSLCAG00010009444)	uap1 (ENSLCAG00010009388)	DDR2 (ENSLCAG00010009354)	hsd17b7 (ENSLCAG00010009344)	serbp1a (ENSLCAG00010009339) #22	ENSLCAG00010009335	ENSLCAG00010009325 #23	ENSLCAG00010009217	ENSLCAG00010009182	cyp2ad2 (ENSLCAG00010009170)	cyp2n13 (ENSLCAG00010009117)	cyp2n13 (ENSLCAG00010009097)	hook1 (ENSLCAG00010009019)	ENSLCAG00010008989	pfas (ENSLCAG00010008947)	IPO13 (ENSLCAG00010008737)	ENSLCAG00010008683	ENSLCAG00010008681	mmachc (ENSLCAG00010008680)	LRRC52 (ENSLCAG00010008678)
Pleuronectoidei	ANCESTRAL SPECIES	29	ENSGT00940000159258.d	ENSGT00940000163126.a.b.g.b	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.g.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00950000182879.a.b.b.a.b	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01070000253866	ENSGT00740000116213	ENSGT00390000003464	ENSGT00940000156906.j.a.a	ENSGT00940000158798
Tongue sole	MODERN SPECIES	11	POLR2E (ENSCSEG00000007107)	rab11ba (ENSCSEG00000007121)	marchf2 (ENSCSEG00000007136)	gpx4a (ENSCSEG00000007167)	PIP5K1C (ENSCSEG00000007222)	ENSCSEG00000007239	ENSCSEG00000007249	fsd1 (ENSCSEG00000007260)	si:ch211-129c21.1 (ENSCSEG00000007288)	scamp4 (ENSCSEG00000007313)	chaf1a (ENSCSEG00000007318)	ubxn6 (ENSCSEG00000007338)	uap1 (ENSCSEG00000007365)	DDR2 (ENSCSEG00000007389)	hsd17b7 (ENSCSEG00000007452)	serbp1a (ENSCSEG00000007473) #22	ENSCSEG00000007482	faslg (ENSCSEG00000007485)	ENSCSEG00000007493	echdc2 (ENSCSEG00000007501)	zyg11 (ENSCSEG00000007515)	coa7 (ENSCSEG00000007558)	ralgps2 (ENSCSEG00000007585)	angptl1a (ENSCSEG00000007645)	fam20b (ENSCSEG00000007654)	mmachc (ENSCSEG00000007667)	ENSCSEG00000007680	ENSCSEG00000007699	IPO13 (ENSCSEG00000007713)	pfas (ENSCSEG00000007870)	ENSCSEG00000007906
Turbot	MODERN SPECIES	3	ENSSMAG00000012720	ENSSMAG00000012782	ENSSMAG00000012809	ENSSMAG00000012826	ENSSMAG00000018613	ENSSMAG00000018632	ENSSMAG00000022469	ENSSMAG00000018573	ENSSMAG00000018528	si:ch211-129c21.1 (ENSSMAG00000018515)	scamp4 (ENSSMAG00000018501)	chaf1a (ENSSMAG00000018482)	ubxn6 (ENSSMAG00000018472)	uap1 (ENSSMAG00000018456)	ENSSMAG00000018395	serbp1a (ENSSMAG00000018372) #22	il12rb2 (ENSSMAG00000018366)	ENSSMAG00000026117	il23r (ENSSMAG00000018352) #23	cyp2p6 (ENSSMAG00000018344)	cyp2ad2 (ENSSMAG00000018341)	cyp2n13 (ENSSMAG00000018331)	cyp2n13 (ENSSMAG00000018325)	hook1 (ENSSMAG00000018281)	ENSSMAG00000018268	pfas (ENSSMAG00000018198)	ENSSMAG00000018046	ENSSMAG00000031460	ENSSMAG00000018003	echdc2 (ENSSMAG00000017920)	zyg11 (ENSSMAG00000017806)
Pinecone sodierfish	MODERN SPECIES	18	ABHD17A (ENSMMDG00005007280)	zgc:77486 (ENSMMDG00005007311)	plin3 (ENSMMDG00005007315)	SEMA6B (ENSMMDG00005007331)	rorca (ENSMMDG00005007343)	sh3gl1b (ENSMMDG00005007345)	mpnd (ENSMMDG00005007413)	stap2b (ENSMMDG00005007531)	fsd1 (ENSMMDG00005007561)	si:ch211-129c21.1 (ENSMMDG00005008002)	scamp4 (ENSMMDG00005008009)	ubxn6 (ENSMMDG00005008016)	uap1 (ENSMMDG00005008036)	DDR2 (ENSMMDG00005008427)	ENSMMDG00005008432	serbp1a (ENSMMDG00005008434) #22	il12rb2 (ENSMMDG00005008439)	ENSMMDG00005008448 #23	ENSMMDG00005008457	ENSMMDG00005008464	ENSMMDG00005008504	ENSMMDG00005009242	cyp2n13 (ENSMMDG00005009434)	cyp2n13 (ENSMMDG00005009967)	ENSMMDG00005009992	cyp2n13 (ENSMMDG00005000182)	cyp2n13 (ENSMMDG00005000494)	cyp2n13 (ENSMMDG00005000977)	hook1 (ENSMMDG00005001081)	ENSMMDG00005006816	pfas (ENSMMDG00005006853)
Cod	MODERN SPECIES	3	ENSGMOG00000016644	plin3 (ENSGMOG00000016686)	rorca (ENSGMOG00000000779)	SH3GL1 (ENSGMOG00000000764)	mpnd (ENSGMOG00000000741)	stap2b (ENSGMOG00000031573)	fsd1 (ENSGMOG00000012688)	si:ch211-129c21.1 (ENSGMOG00000006845)	ENSGMOG00000035805	scamp4 (ENSGMOG00000015365)	chaf1a (ENSGMOG00000015371)	ubxn6 (ENSGMOG00000015399)	uap1 (ENSGMOG00000015423)	ENSGMOG00000015439	hsd17b7 (ENSGMOG00000000160)	serbp1a (ENSGMOG00000015470) #22	lrp8 (ENSGMOG00000002561)	cfap144 (ENSGMOG00000031988)	EBNA1BP2 (ENSGMOG00000004150)	TMEM125 (ENSGMOG00000030092)	ap1m3 (ENSGMOG00000004130)	ENSGMOG00000009824	ENSGMOG00000004733	ENSGMOG00000004711	ENSGMOG00000031193	ENSGMOG00000008773	ENSGMOG00000023155	ENSGMOG00000008740	ENSGMOG00000008719	ENSGMOG00000008701	ENSGMOG00000031127
Protacanthopterygii	ANCESTRAL SPECIES	34	ENSGT00940000157316.f	ENSGT00940000157316.e.b	ENSGT00940000156099	ENSGT00940000165058.a	ENSGT00950000183022.a.a.b.b	ENSGT00940000154304.C	ENSGT00940000164081.b	ENSGT00940000157380	ENSGT00940000159036	ENSGT00510000046975.b	ENSGT00940000164616	ENSGT00940000157769	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a #22	ENSGT00730000111014.o.b	ENSGT00530000063751.a.a	ENSGT00940000157990.a.b	ENSGT00940000166379	ENSGT00940000160062.b	ENSGT00390000010172	ENSGT00940000164461	ENSGT00390000003428	ENSGT00670000099343	ENSGT00440000033811	ENSGT00940000161471	ENSGT00940000162640	ENSGT00940000165649.e	ENSGT00940000158640	ENSGT00510000048726
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	60	ENSGT00940000157316.f	ENSGT00940000158520.f	ENSGT00940000157316.e.b.a	ENSGT00940000156099.f	ENSGT00940000165058.a.g	ENSGT00940000154304.C.b	ENSGT00940000164081.b.f	ENSGT00940000157380.c.b	ENSGT00940000159036.f	ENSGT00510000046975.b.k	ENSGT00940000164616	ENSGT00940000157769.p	ENSGT00940000153464.A.b.q	ENSGT00940000154842.a.b.e.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a.c #22	ENSGT00730000111014.o.b.f	ENSGT00530000063751.a.a.f	ENSGT00940000157990.a.b.a	ENSGT00940000166379.b	ENSGT00940000160062.b.d	ENSGT00390000010172.tb	ENSGT00940000164461	ENSGT00390000003428.f	ENSGT00670000099343.a	ENSGT00440000033811	ENSGT00940000161471.g	ENSGT00940000162640.c	ENSGT00940000165649.e	ENSGT00940000158640.i	ENSGT00510000048726.a
Huchen	MODERN SPECIES	439									ENSHHUG00000030491	ENSHHUG00000030501	ENSHHUG00000030506	uhmk1 (ENSHHUG00000030515)	uap1 (ENSHHUG00000030537)	DDR2 (ENSHHUG00000030633)	hsd17b7 (ENSHHUG00000030667)	serbp1a (ENSHHUG00000030681) #22	tprb (ENSHHUG00000030688)	ENSHHUG00000030718	ENSHHUG00000030726	nrl (ENSHHUG00000030760)	ENSHHUG00000030767	paics (ENSHHUG00000030770)	ppat (ENSHHUG00000030784)	ENSHHUG00000030963	ENSHHUG00000030971	AASDH (ENSHHUG00000030984)	cracd (ENSHHUG00000031026)	chst14 (ENSHHUG00000031050)	cep135 (ENSHHUG00000031055)	exoc1 (ENSHHUG00000031092)	ENSHHUG00000031403
Salmoninae_a	ANCESTRAL SPECIES	46	ENSGT00940000157316.f	ENSGT00940000157316.e.b.a	ENSGT00940000156099.f	ENSGT00940000165058.a.g	ENSGT00990000209517	ENSGT00940000154304.C.b	ENSGT00940000164081.b.f	ENSGT00940000157380.c.b	ENSGT00940000159036.f	ENSGT00510000046975.b.k	ENSGT00940000164616	ENSGT00940000157769.p	ENSGT00940000153464.A.b.q	ENSGT00940000154842.a.b.e.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a.c #22	ENSGT00730000111014.o.b.f	ENSGT00530000063751.a.a.f	ENSGT00940000157990.a.b.a	ENSGT00940000166379.b	ENSGT00940000160062.b.d	ENSGT00390000010172.tb	ENSGT00940000164461	ENSGT00390000003428.f	ENSGT00670000099343.a	ENSGT00440000033811	ENSGT00940000161471.g	ENSGT00940000162640.c	ENSGT00940000165649.e	ENSGT00940000158640.i	ENSGT00510000048726.a
Oncorhynchus	ANCESTRAL SPECIES		ENSGT00940000157316.f	ENSGT00940000157316.e.b.a	ENSGT00940000156099.f	ENSGT00940000165058.a.g	ENSGT00990000209517	ENSGT00940000154304.C.b	ENSGT00940000164081.b.f	ENSGT00940000157380.c.b	ENSGT00940000159036.f	ENSGT00510000046975.b.k	ENSGT00940000164616	ENSGT00940000157769.p	ENSGT00940000153464.A.b.q	ENSGT00940000154842.a.b.e.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a.c #22	ENSGT00730000111014.o.b.f	ENSGT00530000063751.a.a.f	ENSGT00940000157990.a.b.a	ENSGT00940000166379.b	ENSGT00940000160062.b.d	ENSGT00390000010172.tb	ENSGT00940000164461.lb	ENSGT00390000003428.f	ENSGT00670000099343.a	ENSGT00440000033811	ENSGT00940000161471.g	ENSGT00940000162640.c	ENSGT00940000165649.e	ENSGT00940000158640.i	ENSGT00510000048726.a
Oncorhynchus_a	ANCESTRAL SPECIES		ENSGT00940000158520.e.b.b	ENSGT00940000157316.f	ENSGT00940000157316.e.b.a	ENSGT00940000156099.f	ENSGT00940000165058.a.g	ENSGT00990000209517	ENSGT00940000154304.C.b	ENSGT00940000164081.b.f	ENSGT00940000157380.c.b	ENSGT00940000159036.f	ENSGT00510000046975.b.k	ENSGT00940000157769.p	ENSGT00940000153464.A.b.q	ENSGT00940000154842.a.b.e.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a.c #22	ENSGT00730000111014.o.b.f	ENSGT00530000063751.a.a.f	ENSGT00940000157990.a.b.a	ENSGT00940000166379.b	ENSGT00940000160062.b.d	ENSGT00390000010172.tb	ENSGT00390000003428.f	ENSGT00670000099343.a	ENSGT00440000033811	ENSGT00940000161471.g	ENSGT00940000162640.c	ENSGT00940000165649.e	ENSGT00940000158640.i	ENSGT00510000048726.a	ENSGT00940000157580.a.a.d
Chinook salmon	MODERN SPECIES		RGS13 (ENSOTSG00005033765)	ENSOTSG00005033763	RGS1 (ENSOTSG00005033759)	brinp3a.2 (ENSOTSG00005033758)	brinp3a.1 (ENSOTSG00005033757)	ENSOTSG00005033756	rgs8 (ENSOTSG00005033755)	rgs16 (ENSOTSG00005033704)	rgs5a (ENSOTSG00005033703)	rgs4 (ENSOTSG00005033700)	ENSOTSG00005033697	uhmk1 (ENSOTSG00005033694)	uap1 (ENSOTSG00005033180)	DDR2 (ENSOTSG00005033127)	ENSOTSG00005033115	serbp1a (ENSOTSG00005033084) #22	tprb (ENSOTSG00005032894)	ENSOTSG00005032861	ENSOTSG00005032858	nrl (ENSOTSG00005032855)	ENSOTSG00005032851	paics (ENSOTSG00005031944)	ppat (ENSOTSG00005031930)	ENSOTSG00005031928	AASDH (ENSOTSG00005031923)	cracd (ENSOTSG00005031922)	chst14 (ENSOTSG00005031918)	cep135 (ENSOTSG00005031907)	exoc1 (ENSOTSG00005030959)	nmu (ENSOTSG00005030938)	clocka (ENSOTSG00005026929)
Coho salmon	MODERN SPECIES	1	RGS13 (ENSOKIG00005020006)	RGS1 (ENSOKIG00005020001)	ENSOKIG00005019994	brinp3a.2 (ENSOKIG00005019983)	brinp3a.1 (ENSOKIG00005019954)	rgs8 (ENSOKIG00005019948)	rgs16 (ENSOKIG00005019935)	rgs5a (ENSOKIG00005019924)	rgs4 (ENSOKIG00005019913)	ENSOKIG00005019904	ENSOKIG00005019871	uhmk1 (ENSOKIG00005019819)	uap1 (ENSOKIG00005019658)	DDR2 (ENSOKIG00005019403)	ENSOKIG00005019357	serbp1a (ENSOKIG00005019333) #22	ENSOKIG00005019318	tprb (ENSOKIG00005019019)	ENSOKIG00005018960	ENSOKIG00005018894	nrl (ENSOKIG00005018887)	ENSOKIG00005018867	paics (ENSOKIG00005018350)	ppat (ENSOKIG00005018219)	AASDH (ENSOKIG00005018135)	cracd (ENSOKIG00005018108)	chst14 (ENSOKIG00005018099)	cep135 (ENSOKIG00005018058)	exoc1 (ENSOKIG00005017767)	nmu (ENSOKIG00005017696)	clocka (ENSOKIG00005015894)
Rainbow trout	MODERN SPECIES	22	ENSOMYG00000014683	RGS1 (ENSOMYG00000014620)	brinp3a.2 (ENSOMYG00000014608)	brinp3a.1 (ENSOMYG00000014578)	rgs8 (ENSOMYG00000014555)	rgs16 (ENSOMYG00000056056)	rgs5a (ENSOMYG00000014532)	rgs4 (ENSOMYG00000052330)	ENSOMYG00000063811	ENSOMYG00000050321	ENSOMYG00000056159	uhmk1 (ENSOMYG00000014497)	uap1 (ENSOMYG00000014055)	ENSOMYG00000013833	ENSOMYG00000070155	serbp1a (ENSOMYG00000013784) #22	ENSOMYG00000011658	ENSOMYG00000011441	ENSOMYG00000011310	ENSOMYG00000011288	ENSOMYG00000068922	paics (ENSOMYG00000011122)	ENSOMYG00000048628	ppat (ENSOMYG00000011044)	AASDH (ENSOMYG00000010991)	cracd (ENSOMYG00000010956)	ENSOMYG00000050697	ENSOMYG00000010912	EXOC1 (ENSOMYG00000010347)	nmu (ENSOMYG00000063104)	ENSOMYG00000075108
Salmo	ANCESTRAL SPECIES	20	ENSGT00940000158520.e.b.b	ENSGT00940000157316.f	ENSGT00940000157316.e.b.a	ENSGT00940000156099.f	ENSGT00940000165058.a.g	ENSGT00990000209517	ENSGT00940000154304.C.b	ENSGT00940000164081.b.f	ENSGT00940000157380.c.b	ENSGT00940000159036.f	ENSGT00510000046975.b.k	ENSGT00940000157769.p	ENSGT00940000153464.A.b.q	ENSGT00940000154842.a.b.e.e	ENSGT00390000013340.d	ENSGT00520000055591.a.a.c #22	ENSGT00730000111014.o.b.f	ENSGT00530000063751.a.a.f	ENSGT00940000157990.a.b.a	ENSGT00940000166379.b	ENSGT00940000160062.b.d	ENSGT00390000010172.tb	ENSGT00390000003428.f	ENSGT00440000033811	ENSGT00940000161471.g	ENSGT00940000162640.c	ENSGT00940000165649.e	ENSGT00940000158640.i	ENSGT00940000176973.b	ENSGT00510000048726.a	ENSGT00940000157580.a.a.d
Atlantic salmon	MODERN SPECIES	15	brinp3a.1 (ENSSSAG00000010229)	ENSSSAG00000099957	ENSSSAG00000010238	rgs8 (ENSSSAG00000084763)	rgs16 (ENSSSAG00000010258)	rgs5a (ENSSSAG00000010277)	rgs4 (ENSSSAG00000092662)	ENSSSAG00000092001	ENSSSAG00000096231	uhmk1 (ENSSSAG00000110248)	ENSSSAG00000100008	ENSSSAG00000106233	uap1 (ENSSSAG00000010526)	ENSSSAG00000015802	hsd17b7 (ENSSSAG00000031963)	serbp1a (ENSSSAG00000032139) #22	ENSSSAG00000033233	ENSSSAG00000040343	ENSSSAG00000040388	ENSSSAG00000040731	ENSSSAG00000040748	paics (ENSSSAG00000040893)	ppat (ENSSSAG00000042182)	ENSSSAG00000121485	ENSSSAG00000083847	AASDH (ENSSSAG00000042247)	cracd (ENSSSAG00000042849)	ENSSSAG00000042869	cep135 (ENSSSAG00000042894)	EXOC1 (ENSSSAG00000043634)	nmu (ENSSSAG00000056076)
River trout	MODERN SPECIES	33	rgs4 (ENSSTUG00000012793)	ENSSTUG00000012803	ENSSTUG00000012851	ENSSTUG00000012863	ENSSTUG00000012875	ENSSTUG00000012881	ENSSTUG00000012906	ENSSTUG00000012924	ENSSTUG00000012930	uhmk1 (ENSSTUG00000012961)	uap1 (ENSSTUG00000012994)	ENSSTUG00000013232	ENSSTUG00000013242	DDR2 (ENSSTUG00000013276)	hsd17b7 (ENSSTUG00000000180)	serbp1a (ENSSTUG00000000202) #22	tprb (ENSSTUG00000000269)	ENSSTUG00000000411	ENSSTUG00000000448	nrl (ENSSTUG00000000474)	ENSSTUG00000000485	paics (ENSSTUG00000000523)	ppat (ENSSTUG00000000699)	AASDH (ENSSTUG00000000719)	cracd (ENSSTUG00000000803)	chst14 (ENSSTUG00000000810)	cep135 (ENSSTUG00000000825)	exoc1 (ENSSTUG00000000912)	ENSSTUG00000001087	clocka (ENSSTUG00000001212)	tmem165 (ENSSTUG00000002517)
Salmoninae	ANCESTRAL SPECIES	15	ENSGT00940000155195.g	ENSGT00940000157937.b.b	ENSGT00940000158520.e.b.a	ENSGT00940000157316.e.b.b	ENSGT00940000156099.e	ENSGT00940000165058.a.h	ENSGT00950000183022.a.a.b.b	ENSGT00940000154304.C.a	ENSGT00940000164081.b.e	ENSGT00940000157380.c.a	ENSGT00940000159036.e	ENSGT00510000046975.b.j	ENSGT00940000157769.o	ENSGT00940000153464.A.b.r	ENSGT00940000154842.a.b.e.f	ENSGT00520000055591.a.a.d #22	ENSGT00730000111014.o.b.e	ENSGT00530000063751.a.a.e	ENSGT00940000157990.a.b.b	ENSGT00940000166379.a	ENSGT00940000160062.b.c	ENSGT00390000010172.ub	ENSGT00390000003428.e	ENSGT00670000099343.b	ENSGT00940000161471.h	ENSGT00940000162640.d	ENSGT00940000158640.j	ENSGT00510000048726.b	ENSGT00940000157580.a.a.c	ENSGT00390000005261.f	ENSGT00940000155626.fd.b
Salmoninae_a	ANCESTRAL SPECIES	9	ENSGT00940000155195.g	ENSGT00940000157937.b.b	ENSGT00940000158520.e.b.a	ENSGT00940000157316.e.b.b	ENSGT00940000156099.e	ENSGT00940000165058.a.h	ENSGT00950000183022.a.a.b.b	ENSGT00940000154304.C.a	ENSGT00940000164081.b.e	ENSGT00940000157380.c.a	ENSGT00940000159036.e	ENSGT00510000046975.b.j	ENSGT00940000157769.o	ENSGT00940000153464.A.b.r	ENSGT00940000154842.a.b.e.f	ENSGT00520000055591.a.a.d #22	ENSGT00730000111014.o.b.e	ENSGT00530000063751.a.a.e	ENSGT00940000157990.a.b.b	ENSGT00940000166379.a	ENSGT00940000160062.b.c	ENSGT00390000010172.ub	ENSGT00390000003428.e	ENSGT00670000099343.b	ENSGT00940000161471.h	ENSGT00940000162640.d	ENSGT00940000158640.j	ENSGT00510000048726.b	ENSGT00940000157580.a.a.c	ENSGT00390000005261.f	ENSGT00940000155626.fd.b
Salmo	ANCESTRAL SPECIES	14	ENSGT00940000155195.g	ENSGT00940000157937.b.b	ENSGT00940000158520.e.b.a	ENSGT00940000157316.e.b.b	ENSGT00940000156099.e	ENSGT00940000165058.a.h	ENSGT00950000183022.a.a.b.b	ENSGT00940000154304.C.a	ENSGT00940000164081.b.e	ENSGT00940000157380.c.a	ENSGT00940000159036.e	ENSGT00510000046975.b.j	ENSGT00940000157769.o	ENSGT00940000153464.A.b.r	ENSGT00940000154842.a.b.e.f	ENSGT00520000055591.a.a.d #22	ENSGT00730000111014.o.b.e	ENSGT00530000063751.a.a.e	ENSGT00940000157990.a.b.b	ENSGT00940000166379.a	ENSGT00940000160062.b.c	ENSGT00390000010172.ub	ENSGT00390000003428.e	ENSGT00670000099343.b	ENSGT00940000161471.h	ENSGT00940000162640.d	ENSGT00940000158640.j	ENSGT00940000176973.a	ENSGT00510000048726.b	ENSGT00940000157580.a.a.c	ENSGT00390000005261.f
River trout	MODERN SPECIES	14	uchl5 (ENSSTUG00000002644)	ENSSTUG00000002593	RGS13 (ENSSTUG00000002578)	RGS1 (ENSSTUG00000002569)	brinp3a.2 (ENSSTUG00000002555)	brinp3a.1 (ENSSTUG00000002525)	ENSSTUG00000002512	rgs8 (ENSSTUG00000002507)	rgs16 (ENSSTUG00000002495)	rgs5a (ENSSTUG00000002489)	rgs4 (ENSSTUG00000002484)	ENSSTUG00000016489	uhmk1 (ENSSTUG00000016471)	uap1 (ENSSTUG00000015973)	DDR2 (ENSSTUG00000015773)	serbp1a (ENSSTUG00000015725) #22	tprb (ENSSTUG00000013032)	prg4b (ENSSTUG00000012812)	ENSSTUG00000012632	nrl (ENSSTUG00000012618)	REM2 (ENSSTUG00000012581)	paics (ENSSTUG00000012102)	ppat (ENSSTUG00000011964)	ENSSTUG00000011949	cracd (ENSSTUG00000011852)	chst14 (ENSSTUG00000011845)	exoc1 (ENSSTUG00000011507)	ENSSTUG00000011460	clocka (ENSSTUG00000010504)	tmem165 (ENSSTUG00000010472)	ENSSTUG00000010274
Atlantic salmon	MODERN SPECIES	1	uchl5 (ENSSSAG00000028321)	RGS2 (ENSSSAG00000027956)	RGS13 (ENSSSAG00000027762)	RGS1 (ENSSSAG00000027609)	brinp3a.2 (ENSSSAG00000025797)	brinp3a.1 (ENSSSAG00000024431)	ENSSSAG00000024249	rgs8 (ENSSSAG00000115928)	rgs16 (ENSSSAG00000023910)	RGS5 (ENSSSAG00000023533)	rgs4 (ENSSSAG00000088625)	ENSSSAG00000023006	uhmk1 (ENSSSAG00000109815)	uap1 (ENSSSAG00000019712)	ENSSSAG00000017684	serbp1a (ENSSSAG00000017429) #22	ENSSSAG00000015852	ENSSSAG00000116736	ENSSSAG00000015744	ENSSSAG00000015526	ENSSSAG00000015485	ENSSSAG00000015445	paics (ENSSSAG00000010758)	PPAT (ENSSSAG00000010520)	ENSSSAG00000010452	cracd (ENSSSAG00000010269)	ENSSSAG00000111516	ENSSSAG00000010241	EXOC1 (ENSSSAG00000006392)	nmu (ENSSSAG00000093374)	CLOCK (ENSSSAG00000003979)
Oncorhynchus	ANCESTRAL SPECIES	8	ENSGT00940000155195.g	ENSGT00940000157937.b.b	ENSGT00940000158520.e.b.a	ENSGT00940000157316.e.b.b	ENSGT00940000156099.e	ENSGT00940000165058.a.h	ENSGT00950000183022.a.a.b.b	ENSGT00940000154304.C.a	ENSGT00940000164081.b.e	ENSGT00940000157380.c.a	ENSGT00940000159036.e	ENSGT00510000046975.b.j	ENSGT00940000157769.o	ENSGT00940000153464.A.b.r	ENSGT00940000154842.a.b.e.f	ENSGT00520000055591.a.a.d #22	ENSGT00730000111014.o.b.e	ENSGT00530000063751.a.a.e	ENSGT00940000157990.a.b.b.b	ENSGT00940000166379.a	ENSGT00940000160062.b.c	ENSGT00390000010172.ub	ENSGT00940000164461.kb	ENSGT00390000003428.e	ENSGT00670000099343.b	ENSGT00940000161471.h	ENSGT00940000162640.d	ENSGT00940000158640.j	ENSGT00510000048726.b	ENSGT00940000157580.a.a.c	ENSGT00390000005261.f
Oncorhynchus_a	ANCESTRAL SPECIES	14	ENSGT00940000155195.g	ENSGT00940000157937.b.b	ENSGT00940000158520.e.b.a	ENSGT00940000157316.e.b.b	ENSGT00940000156099.e	ENSGT00940000165058.a.h	ENSGT00950000183022.a.a.b.b	ENSGT00940000154304.C.a	ENSGT00940000164081.b.e	ENSGT00940000157380.c.a	ENSGT00940000159036.e	ENSGT00510000046975.b.j	ENSGT00940000157769.o	ENSGT00940000153464.A.b.r	ENSGT00940000154842.a.b.e.f	ENSGT00520000055591.a.a.d #22	ENSGT00730000111014.o.b.e	ENSGT00530000063751.a.a.e	ENSGT00940000157990.a.b.b.a	ENSGT00940000166379.a	ENSGT00940000160062.b.c	ENSGT00390000010172.ub	ENSGT00390000003428.e	ENSGT00670000099343.b	ENSGT00940000161471.h	ENSGT00940000162640.d	ENSGT00940000158640.j	ENSGT00510000048726.b	ENSGT00940000157580.a.a.c	ENSGT00390000005261.f	ENSGT00940000155626.fd.b
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	29	ENSOTSG00005021765	RGS13 (ENSOTSG00005021764)	RGS1 (ENSOTSG00005021763)	brinp3a.2 (ENSOTSG00005021744)	pno1 (ENSOTSG00005021741)	brinp3a.1 (ENSOTSG00005021740)	ENSOTSG00005021636	rgs8 (ENSOTSG00005021633)	rgs16 (ENSOTSG00005021631)	rgs5a (ENSOTSG00005021628)	rgs4 (ENSOTSG00005021626)	ENSOTSG00005021624	uhmk1 (ENSOTSG00005021623)	uap1 (ENSOTSG00005021609)	DDR2 (ENSOTSG00005021605)	serbp1a (ENSOTSG00005021601) #22	tprb (ENSOTSG00005021597)	ENSOTSG00005021592	ENSOTSG00005021581	nrl (ENSOTSG00005021568)	ENSOTSG00005021561	ENSOTSG00005021557	paics (ENSOTSG00005020458)	ppat (ENSOTSG00005020453)	ENSOTSG00005020452	cracd (ENSOTSG00005020450)	exoc1 (ENSOTSG00005020314)	nmu (ENSOTSG00005020306)	clocka (ENSOTSG00005019295)	tmem165 (ENSOTSG00005019289)	KIT (ENSOTSG00005019264)
Chinook salmon	MODERN SPECIES	29	ENSOTSG00005034106	RGS13 (ENSOTSG00005034105)	RGS1 (ENSOTSG00005034102)	brinp3a.2 (ENSOTSG00005034100)	pno1 (ENSOTSG00005034097)	brinp3a.1 (ENSOTSG00005034095)	ENSOTSG00005034009	rgs8 (ENSOTSG00005034008)	rgs16 (ENSOTSG00005034007)	rgs5a (ENSOTSG00005034006)	rgs4 (ENSOTSG00005034005)	ENSOTSG00005034004	uhmk1 (ENSOTSG00005034003)	uap1 (ENSOTSG00005033978)	DDR2 (ENSOTSG00005033973)	serbp1a (ENSOTSG00005033970) #22	tprb (ENSOTSG00005033935)	ENSOTSG00005033933	ENSOTSG00005033930	nrl (ENSOTSG00005033929)	ENSOTSG00005033927	ENSOTSG00005033924	paics (ENSOTSG00005033333)	ppat (ENSOTSG00005033328)	ENSOTSG00005033326	cracd (ENSOTSG00005033325)	exoc1 (ENSOTSG00005032522)	nmu (ENSOTSG00005032521)	clocka (ENSOTSG00005030978)	tmem165 (ENSOTSG00005030962)	KIT (ENSOTSG00005030883)
Coho salmon	MODERN SPECIES	4	RGS13 (ENSOKIG00005047580)	ENSOKIG00005047585	RGS1 (ENSOKIG00005047597)	ENSOKIG00005047610	brinp3a.2 (ENSOKIG00005047620)	brinp3a.1 (ENSOKIG00005047647)	ENSOKIG00005047657	rgs8 (ENSOKIG00005047692)	rgs16 (ENSOKIG00005047697)	rgs5a (ENSOKIG00005047708)	rgs4 (ENSOKIG00005047735)	ENSOKIG00005047740	uhmk1 (ENSOKIG00005047753)	uap1 (ENSOKIG00005047773)	DDR2 (ENSOKIG00005047831)	serbp1a (ENSOKIG00005047907) #22	TPR (ENSOKIG00005047953)	ENSOKIG00005048113	ENSOKIG00005048141	ENSOKIG00005048179	REM2 (ENSOKIG00005048181)	paics (ENSOKIG00005048197)	PPAT (ENSOKIG00005048311)	ENSOKIG00005048318	cracd (ENSOKIG00005048331)	CHST14 (ENSOKIG00005048334)	EXOC1 (ENSOKIG00005048357)	nmu (ENSOKIG00005048902)	CLOCK (ENSOKIG00005048996)	tmem165 (ENSOKIG00005049269)	ENSOKIG00005049332
Rainbow trout	MODERN SPECIES	26	brinp3a.2 (ENSOMYG00000012456)	ENSOMYG00000054136	ENSOMYG00000076135	brinp3a.1 (ENSOMYG00000012431)	ENSOMYG00000012344	rgs8 (ENSOMYG00000012326)	rgs16 (ENSOMYG00000012320)	rgs5a (ENSOMYG00000012308)	ENSOMYG00000068573	rgs4 (ENSOMYG00000066730)	ENSOMYG00000012286	ENSOMYG00000053007	uhmk1 (ENSOMYG00000012261)	uap1 (ENSOMYG00000012062)	ENSOMYG00000011961	serbp1a (ENSOMYG00000011907) #22	ENSOMYG00000009177	ENSOMYG00000008368	ENSOMYG00000008281	ENSOMYG00000008147	ENSOMYG00000008093	paics (ENSOMYG00000008066)	ENSOMYG00000008056	PPAT (ENSOMYG00000007988)	cracd (ENSOMYG00000059164)	ENSOMYG00000067055	ENSOMYG00000007923	EXOC1 (ENSOMYG00000007846)	nmu (ENSOMYG00000007518)	CLOCK (ENSOMYG00000007017)	tmem165 (ENSOMYG00000006308)
Huchen	MODERN SPECIES	442														uap1 (ENSHHUG00000036552)	DDR2 (ENSHHUG00000036535)	serbp1a (ENSHHUG00000036510) #22	ENSHHUG00000036505	tprb (ENSHHUG00000036290)	ENSHHUG00000036278	ENSHHUG00000036236	nrl (ENSHHUG00000036227)	REM2 (ENSHHUG00000036206)	paics (ENSHHUG00000036126)	ppat (ENSHHUG00000035999)	ENSHHUG00000035978	ENSHHUG00000035974	cracd (ENSHHUG00000035961)	ENSHHUG00000035955	exoc1 (ENSHHUG00000035825)	nmu (ENSHHUG00000035813)	clocka (ENSHHUG00000035395)
Northern pike	MODERN SPECIES	7	RGS13 (ENSELUG00000031770)	ENSELUG00000003335	RGS1 (ENSELUG00000003351)	brinp3a.2 (ENSELUG00000000111)	brinp3a.1 (ENSELUG00000003393)	ENSELUG00000003442	rgs8 (ENSELUG00000030393)	rgs16 (ENSELUG00000003499)	RGS5 (ENSELUG00000026705)	ENSELUG00000026954	rgs4 (ENSELUG00000003529)	NOS1AP (ENSELUG00000003580)	uhmk1 (ENSELUG00000003613)	uap1 (ENSELUG00000003648)	DDR2 (ENSELUG00000003697)	serbp1a (ENSELUG00000003727) #22	tprb (ENSELUG00000003778)	ENSELUG00000003806	ENSELUG00000003870	nrl (ENSELUG00000003877)	ENSELUG00000003891	paics (ENSELUG00000003937)	ppat (ENSELUG00000003992)	ENSELUG00000004031	AASDH (ENSELUG00000004068)	cracd (ENSELUG00000004112)	chst14 (ENSELUG00000028149)	cep135 (ENSELUG00000004169)	exoc1 (ENSELUG00000004265)	nmu (ENSELUG00000004311)	clocka (ENSELUG00000004330)
Osteoglossocephalai	ANCESTRAL SPECIES	115	ENSGT00940000164211	ENSGT00940000155152.f.a	ENSGT00550000075080	ENSGT00940000158746	ENSGT00390000001114	ENSGT00390000006200	ENSGT00940000155195	ENSGT00940000157937.b	ENSGT00940000158520.e.a	ENSGT00940000157316	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340	ENSGT00520000055591.a.b #22	ENSGT00940000159829.c.b #23	ENSGT00940000155665.a #27	ENSGT00940000160185 #32	ENSGT00940000156301.a.b #33
Osteoglossiformes	ANCESTRAL SPECIES	51	ENSGT00940000155117.f.a	ENSGT00390000001114	ENSGT00390000006200	ENSGT00940000155195	ENSGT00940000157937.b	ENSGT00940000158520.e.a	ENSGT00940000157316	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00940000157380	ENSGT00940000159036.b	ENSGT00940000153464.A.b.t	ENSGT00940000154842.a.b.f	ENSGT00390000013340	ENSGT00520000055591.a.b #22	ENSGT00940000159829.c.b #23	ENSGT00940000155665.a #27	ENSGT01030000234573.A.b.a.a #29	ENSGT00940000154396.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301.a.b #33	ENSGT00940000155190 #34	ENSGT00730000111209.k #35	ENSGT00940000158755.b #37	ENSGT00940000157092.r	ENSGT00940000158648.d	ENSGT00940000157568.d	ENSGT00940000153947.B.b	ENSGT00940000155542.b
Asian bonytongue	MODERN SPECIES	18	b3galt2 (ENSSFOG00015031272)	cdc73 (ENSSFOG00015011900)	ro60 (ENSSFOG00015011990)	rgs2 (ENSSFOG00015030714)	rgs13 (ENSSFOG00015012027)	RGS1 (ENSSFOG00015012047)	rgs18 (ENSSFOG00015012080)	ENSSFOG00015012096	rgs5b (ENSSFOG00015012140)	rgs5a (ENSSFOG00015025128)	rgs4 (ENSSFOG00015012181)	ENSSFOG00015012194	UAP1 (ENSSFOG00015012249)	DDR2 (ENSSFOG00015012278)	hsd17b7 (ENSSFOG00015012348)	SERBP1 (ENSSFOG00015026486) #22	ENSSFOG00015012402 #23	slc35d1a (ENSSFOG00015012432) #27	mier1a (ENSSFOG00015012453) #29	insl5b (ENSSFOG00015012465) #31	dynlt5 (ENSSFOG00015012485) #32	SGIP1 (ENSSFOG00015012521) #33	PDE4B (ENSSFOG00015012694) #34	LEPR (ENSSFOG00015012782) #35	ENSSFOG00015012808	LEPROT (ENSSFOG00015025521) #36	DNAJC6 (ENSSFOG00015012857) #37	jak1 (ENSSFOG00015012910)	RAVER2 (ENSSFOG00015013015)	CACHD1 (ENSSFOG00015013065)	ROR1 (ENSSFOG00015013171)
P. kingsleyae	MODERN SPECIES	81	ENSPKIG00000019752	KDM4B (ENSPKIG00000019685)	uhrf1 (ENSPKIG00000019596)	ENSPKIG00000019564	ROR1 (ENSPKIG00000019541)	CACHD1 (ENSPKIG00000019410)	RAVER2 (ENSPKIG00000019357)	jak1 (ENSPKIG00000019281)	DNAJC6 (ENSPKIG00000019236) #37	lepr (ENSPKIG00000019200) #35	PDE4B (ENSPKIG00000019035) #34	SGIP1 (ENSPKIG00000018931) #33	dynlt5 (ENSPKIG00000018906) #32	ENSPKIG00000018889	hsd17b7 (ENSPKIG00000018855)	SERBP1 (ENSPKIG00000018832) #22	ENSPKIG00000018793 #23	slc35d1a (ENSPKIG00000018736) #27	mier1a (ENSPKIG00000018689) #29	DDR2 (ENSPKIG00000018612)	UAP1 (ENSPKIG00000018534)	ENSPKIG00000018473	rgs4 (ENSPKIG00000018438)	RGS5 (ENSPKIG00000018423)	rgs5b (ENSPKIG00000018406)	ENSPKIG00000018382	rgs18 (ENSPKIG00000018364)	RGS1 (ENSPKIG00000018348)	rgs13 (ENSPKIG00000018325)	rgs2 (ENSPKIG00000018309)	uchl5 (ENSPKIG00000018255)
Clupeocephala	ANCESTRAL SPECIES	159	ENSGT00940000155152.f.a	ENSGT00550000075080	ENSGT00940000154967.a.b.a.b	ENSGT00940000158746	ENSGT00940000155117.f.b	ENSGT00390000001114	ENSGT00390000006200	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340	ENSGT00520000055591.a.b #22	ENSGT00940000155776.a	ENSGT00940000159829.d #23	ENSGT00940000155665.a #27	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000154396.b.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301.a.b #33	ENSGT00940000155190.bb.b #34	ENSGT00390000006503.a #36	ENSGT00940000162256	ENSGT00940000155542.b	ENSGT00940000156746.b	ENSGT00940000158468.a.a	ENSGT00940000154819.a.a.b
Otomorpha	ANCESTRAL SPECIES	163	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.a.b	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000158629	ENSGT00940000156259.a.b.b	ENSGT00530000063187.B.d	ENSGT00940000156906.j.b	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a.c #29	ENSGT00530000063106.A.t	ENSGT00510000047568	ENSGT01060000248962	ENSGT00940000161593.a	ENSGT01030000235558
Clupeiformes	ANCESTRAL SPECIES	92	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.a.b	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000158629	ENSGT00940000156259.a.b.b	ENSGT00530000063187.B.d	ENSGT00940000156906.j.b	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a.c #29	ENSGT00530000063106.A.t	ENSGT00510000047568	ENSGT01060000248962	ENSGT00940000161593.a	ENSGT01030000235558
Denticle herring	MODERN SPECIES	14	ENSDCDG00000021730	cyp8b1.2 (ENSDCDG00000021738)	gjc2 (ENSDCDG00000021739)	iba57 (ENSDCDG00000021741)	jmjd4 (ENSDCDG00000021744)	snap47 (ENSDCDG00000021746)	wnt9a (ENSDCDG00000021748)	wnt3a (ENSDCDG00000021752)	ARF1 (ENSDCDG00000021759)	zgc:63882 (ENSDCDG00000021762)	guk1a (ENSDCDG00000021769)	IPP (ENSDCDG00000021774)	pik3r3a (ENSDCDG00000021780)	ENSDCDG00000021816	LRRC38 (ENSDCDG00000022292)	ENSDCDG00000022298 #22	slc35d1b (ENSDCDG00000022302) #27	mier1b (ENSDCDG00000022310) #29	DIS3L2 (ENSDCDG00000022324)	ACAP2 (ENSDCDG00000022650)	eif2b5 (ENSDCDG00000025848)	ENSDCDG00000025931	ENSDCDG00000025935	ENSDCDG00000025936	ENSDCDG00000025979	ENSDCDG00000027367	vps4b (ENSDCDG00000013960)	NMUR1 (ENSDCDG00000014134)	ENSDCDG00000014148	cpdp (ENSDCDG00000014185)	ENSDCDG00000014323
Atlantic herring	MODERN SPECIES	17	CCDC13 (ENSCHAG00000015940)	ENSCHAG00000015933	cyp8b1.2 (ENSCHAG00000015889)	gjc2 (ENSCHAG00000015884)	iba57 (ENSCHAG00000015805)	jmjd4 (ENSCHAG00000015760)	snap47 (ENSCHAG00000015750)	wnt9a (ENSCHAG00000015715)	wnt3a (ENSCHAG00000015657)	arf1 (ENSCHAG00000015617)	zgc:63882 (ENSCHAG00000015610)	guk1a (ENSCHAG00000015567)	IPP (ENSCHAG00000015541)	ENSCHAG00000015024	ENSCHAG00000015004	SERBP1 (ENSCHAG00000014992) #22	slc35d1b (ENSCHAG00000014776) #27	mier1b (ENSCHAG00000014757) #29	ENSCHAG00000014738	GPR141 (ENSCHAG00000014733)	ctnnd2b (ENSCHAG00000011975)	ANKRD33B (ENSCHAG00000011899)	marchf6 (ENSCHAG00000011455)	atpsckmt (ENSCHAG00000011430)	NETO1 (ENSCHAG00000011425)	cbln2a (ENSCHAG00000011390)	socs6b (ENSCHAG00000011384)	crispld1b (ENSCHAG00000011250)	PI15 (ENSCHAG00000011235)	jph1b (ENSCHAG00000011219)	TMEM70 (ENSCHAG00000011211)
Otophysi	ANCESTRAL SPECIES	194	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00940000165468	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000158629	ENSGT00940000156259.a.b.b	ENSGT00530000063187.B.d	ENSGT00940000156906.j.b	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a.c #29	ENSGT00940000179716	ENSGT00530000063106.A.t	ENSGT00510000047568	ENSGT01060000248962	ENSGT00940000161593.a
Characiphysae	ANCESTRAL SPECIES	121	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00940000165468	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000158629	ENSGT00940000156259.a.b.b	ENSGT00530000063187.B.d	ENSGT00970000195602	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a.c #29	ENSGT00940000179716	ENSGT00530000063106.A.t	ENSGT00510000047568	ENSGT01060000248962	ENSGT00940000161593.a	ENSGT00940000154843.F.c.a
Channel catfish	MODERN SPECIES	26	guk1 (ENSIPUG00000006480)	zgc:63882 (ENSIPUG00000006390)	arf1 (ENSIPUG00000006311)	WNT3A (ENSIPUG00000006237)	WNT9A (ENSIPUG00000006207)	ENSIPUG00000006183	snap47 (ENSIPUG00000006150)	jmjd4 (ENSIPUG00000006140)	iba57 (ENSIPUG00000006129)	GJC1 (ENSIPUG00000006118)	CYP8B1 (ENSIPUG00000006112)	CYP8B1 (ENSIPUG00000006105)	CYP8B1 (ENSIPUG00000006096)	ENSIPUG00000006084	ENSIPUG00000006073	SERBP1 (ENSIPUG00000006028) #22	slc35d1b (ENSIPUG00000005991) #27	mier1 (ENSIPUG00000005974) #29	dis3l2 (ENSIPUG00000005868)	ENSIPUG00000005812	eif2b5 (ENSIPUG00000005756)	ENSIPUG00000005740	ENSIPUG00000005733	DSP (ENSIPUG00000005599)	myl13 (ENSIPUG00000005554)	ENSIPUG00000005432	ENSIPUG00000005391	aqp1a.1 (ENSIPUG00000005359)	ENSIPUG00000005352	aqp1a.2 (ENSIPUG00000005340)	thoc1 (ENSIPUG00000005306)
Characiphysae_b	ANCESTRAL SPECIES	197								ENSGT00940000160510	ENSGT00940000165468	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000158629	ENSGT00940000156259.a.b.b	ENSGT00530000063187.B.d	ENSGT00970000195602	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a.c #29	ENSGT00940000179716	ENSGT00530000063106.A.t	ENSGT00510000047568	ENSGT01060000248962	ENSGT00940000161593.a	ENSGT00940000154843.F.c.a
Characoidei	ANCESTRAL SPECIES	354															ENSGT00530000063187.B.d	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a.c #29	ENSGT00940000179716	ENSGT00530000063106.A.t	ENSGT00510000047568	ENSGT01060000248962
Red-bellied piranha	MODERN SPECIES	1663																ENSPNAG00000025109 #22	slc35d1b (ENSPNAG00000025042) #27
Mexicana tetra	MODERN SPECIES	51	ENSAMXG00000037444	SORCS2 (ENSAMXG00000017491)	ENSAMXG00000043470	ENSAMXG00000019523	ENSAMXG00000031589	ENSAMXG00000019489	ENSAMXG00000030522	ENSAMXG00000035364	wnt9a (ENSAMXG00000040570)	ENSAMXG00000036242	snap47 (ENSAMXG00000019570)	jmjd4 (ENSAMXG00000019587)	iba57 (ENSAMXG00000033607)	ENSAMXG00000039090	ENSAMXG00000019616	ENSAMXG00000033266 #22	slc35d1b (ENSAMXG00000036976) #27	mier1b (ENSAMXG00000042200) #29	ENSAMXG00000041454	DIS3L2 (ENSAMXG00000019663)	ENSAMXG00000042968	eif2b5 (ENSAMXG00000019751)	ENSAMXG00000043569	wnt3a (ENSAMXG00000031704)	arf1 (ENSAMXG00000019845)	zgc:63882 (ENSAMXG00000030163)	guk1a (ENSAMXG00000033762)	IPP (ENSAMXG00000019888)	gjc2 (ENSAMXG00000030957)	cyp8b1.2 (ENSAMXG00000019923)	ENSAMXG00000034524
Electric eel	MODERN SPECIES	549								wnt3a (ENSEEEG00000002587)	arf1 (ENSEEEG00000002560)	zgc:63882 (ENSEEEG00000002558)	guk1a (ENSEEEG00000002556)	IPP (ENSEEEG00000002551)	pik3r3a (ENSEEEG00000002550)	ENSEEEG00000002532	ENSEEEG00000002523	SERBP1 (ENSEEEG00000002520) #22	slc35d1b (ENSEEEG00000002516) #27	mier1b (ENSEEEG00000002510) #29	ENSEEEG00000002509	DIS3L2 (ENSEEEG00000002383)	ENSEEEG00000002360	eif2b5 (ENSEEEG00000002322)	ENSEEEG00000002318	ENSEEEG00000002317	ENSEEEG00000002316	ENSEEEG00000002312	ENSEEEG00000002309	DSP (ENSEEEG00000002304)
Cyprinoidei	ANCESTRAL SPECIES	174	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00940000165468	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000158629	ENSGT00940000156259.a.b.b	ENSGT00530000063187.B.d	ENSGT00940000156906.j.b	ENSGT00520000055591.a.b #22	ENSGT01060000248962	ENSGT00510000047568
Cyprininae	ANCESTRAL SPECIES	66	ENSGT00390000008041.B.f	ENSGT01090000260029.a.b.b.b.a.a.a.a.b.a.b.b.a.a.a	ENSGT01020000230359.E.d	ENSGT00940000153709.B.z	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380.a.a	ENSGT00950000182843.b.g	ENSGT00940000159618.d	ENSGT00940000160510.d	ENSGT00940000165468	ENSGT00940000155815.q.a	ENSGT00940000158629	ENSGT00940000156259.a.b.b.b	ENSGT00940000156906.j.b	ENSGT00520000055591.a.b #22	ENSGT01060000248962	ENSGT00510000047568.a	ENSGT01030000234517.A.n	ENSGT00390000009615.q	ENSGT00390000016232.q	ENSGT00940000157015.i.b.b.b	ENSGT00940000157015.i.a.j	ENSGT00940000156795.e	ENSGT01030000234570.d.b.a.b.b.b.i	ENSGT00940000158574.c.a	ENSGT00940000164845	ENSGT00390000000596.g	ENSGT00940000154276	ENSGT00940000154843.F.c.a.b	ENSGT00940000157354.j.b
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	19	ENSCARG00000016765	CYP8B1 (ENSCARG00000016769)	gjc2 (ENSCARG00000016775)	iba57 (ENSCARG00000016779)	jmjd4 (ENSCARG00000016793)	snap47 (ENSCARG00000016807)	ENSCARG00000016821	wnt9a (ENSCARG00000016826)	wnt3a (ENSCARG00000016853)	ENSCARG00000016895	arf1 (ENSCARG00000016898)	guk1a (ENSCARG00000016905)	IPP (ENSCARG00000016951)	pik3r3a (ENSCARG00000017345)	ENSCARG00000017365	ENSCARG00000017373 #22	ENSCARG00000017406	eif2b5 (ENSCARG00000017437)	rock1 (ENSCARG00000017794)	usp14 (ENSCARG00000018178)	thoc1 (ENSCARG00000019788)	aqp1a.2 (ENSCARG00000019841)	aqp1a.1 (ENSCARG00000019850)	CRHR2 (ENSCARG00000019883)	ENSCARG00000020417	myl13 (ENSCARG00000020421)	pth1r (ENSCARG00000020465)	tmie (ENSCARG00000021763)	ENSCARG00000021772	ENSCARG00000021780	DSP (ENSCARG00000021843)
Goldfish	MODERN SPECIES	11											zgc:63882 (ENSCARG00000054703)	guk1a (ENSCARG00000054639)	pik3r3a (ENSCARG00000054631)	ENSCARG00000054457	ENSCARG00000054409	ENSCARG00000054363 #22	ENSCARG00000054353	eif2b5 (ENSCARG00000053639)	rock1 (ENSCARG00000051534)	usp14 (ENSCARG00000049551)	thoc1 (ENSCARG00000049321)	aqp1a.2 (ENSCARG00000049277)	aqp1a.1 (ENSCARG00000049175)	ENSCARG00000049159	CRHR2 (ENSCARG00000048814)	myl13 (ENSCARG00000048731)	pth1r (ENSCARG00000047642)	ENSCARG00000047570	ENSCARG00000047535	DSP (ENSCARG00000047306)	slc22a23 (ENSCARG00000047265)
Cyprininae_a	ANCESTRAL SPECIES	98	ENSGT00950000182902.a.c.f	ENSGT00390000008041.B.f	ENSGT01090000260029.a.b.b.b.a.a.a.a.b.a.b.b.a.a.a	ENSGT01020000230359.E.d	ENSGT00940000153709.B.z.a	ENSGT01090000260005.a.a.a.b.a.a.a.a	ENSGT00390000006465.c	ENSGT00940000159380.a.a	ENSGT00950000182843.b.g	ENSGT00940000159618.d	ENSGT00940000160510.d	ENSGT00940000165468	ENSGT00940000155815.q.a	ENSGT00940000158629	ENSGT00940000156259.a.b.b.b	ENSGT00520000055591.a.b #22	ENSGT01060000248962	ENSGT00510000047568.a	ENSGT01030000234517.A.n	ENSGT00390000009615.q	ENSGT00390000016232.q	ENSGT00940000157015.i.b.b.b	ENSGT00940000157015.i.a.j	ENSGT00940000156795.e	ENSGT01030000234570.d.b.a.b.b.b.i	ENSGT00940000158574.c.a	ENSGT00940000164845	ENSGT00390000000596.g	ENSGT00390000000596.h	ENSGT00940000154276	ENSGT00940000154843.F.c.a.b
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	1190																ENSSGRG00000005966 #22	eif2b5 (ENSSGRG00000006025)	rock1 (ENSSGRG00000007105)	ENSSGRG00000010855	usp14 (ENSSGRG00000010856)	thoc1 (ENSSGRG00000010860)	aqp1a.2 (ENSSGRG00000010889)	aqp1a.1 (ENSSGRG00000010896)	ENSSGRG00000010899	CRHR2 (ENSSGRG00000010902)	myl13 (ENSSGRG00000010942)	pth1r (ENSSGRG00000010944)	ENSSGRG00000010947	tmie (ENSSGRG00000010948)	ENSSGRG00000010949	ENSSGRG00000010958
Golden-line barbel	MODERN SPECIES	175	greb1l (ENSSGRG00000052909)	ENSSGRG00000052908	ENSSGRG00000052907	CYP8B1 (ENSSGRG00000052906)	gjc2 (ENSSGRG00000052905)	iba57 (ENSSGRG00000052904)	jmjd4 (ENSSGRG00000052903)	snap47 (ENSSGRG00000052902)	wnt9a (ENSSGRG00000052901)	wnt3a (ENSSGRG00000052900)	arf1 (ENSSGRG00000052866)	ENSSGRG00000052863	guk1a (ENSSGRG00000052862)	IPP (ENSSGRG00000052861)	pik3r3a (ENSSGRG00000052860)	ENSSGRG00000052857 #22	ENSSGRG00000052856	eif2b5 (ENSSGRG00000052835)	rock1 (ENSSGRG00000051985)	usp14 (ENSSGRG00000051937)	ENSSGRG00000051935	ENSSGRG00000051931	aqp1a.1 (ENSSGRG00000051928)	CRHR2 (ENSSGRG00000051923)	myl13 (ENSSGRG00000051920)	pth1r (ENSSGRG00000051919)	ENSSGRG00000051918	ENSSGRG00000051917	ENSSGRG00000051916	DSP (ENSSGRG00000051887)	ENSSGRG00000051886
Common carp reference	MODERN SPECIES	29	abhd3 (ENSCCRG00000027129)	greb1l (ENSCCRG00000027147)	ENSCCRG00000022703	ENSCCRG00000070960	ENSCCRG00000082688	ENSCCRG00000079928	iba57 (ENSCCRG00000075511)	jmjd4 (ENSCCRG00000001860)	snap47 (ENSCCRG00000034814)	wnt9a (ENSCCRG00000062230)	wnt3a (ENSCCRG00000003279)	arf1 (ENSCCRG00000065199)	guk1a (ENSCCRG00000063151)	ENSCCRG00000000580	pik3r3a (ENSCCRG00000079471)	ENSCCRG00000065085 #22	ENSCCRG00000010092	rock1 (ENSCCRG00000009200)	usp14 (ENSCCRG00000063203)	thoc1 (ENSCCRG00000009585)	ENSCCRG00000068034	aqp1a.2 (ENSCCRG00000058786)	aqp1a.1 (ENSCCRG00000009618)	ENSCCRG00000064335	ENSCCRG00000079755	myl13 (ENSCCRG00000042460)	pth1r (ENSCCRG00000058326)	tmie (ENSCCRG00000078992)	ENSCCRG00000079909	ENSCCRG00000004106	slc22a23 (ENSCCRG00000004101)
Zebrafish	MODERN SPECIES	11	snap47 (ENSDARG00000063445)	wnt9a (ENSDARG00000063437)	wnt3a (ENSDARG00000058822)	arf1 (ENSDARG00000009484)	C2H1orf35 (ENSDARG00000004525)	guk1a (ENSDARG00000030340)	pik3r3a (ENSDARG00000103038)	ENSDARG00000101799	ENSDARG00000099937	eif2b5 (ENSDARG00000074995)	rock1 (ENSDARG00000058993)	usp14 (ENSDARG00000025889)	thoc1 (ENSDARG00000088246)	aqp1a.2 (ENSDARG00000091027)	aqp1a.1 (ENSDARG00000023713)	ENSDARG00000087421 #22	ENSDARG00000114019	CRHR2 (ENSDARG00000062377)	crhr2 (ENSDARG00000103704)	myl13 (ENSDARG00000042245)	pth1r (ENSDARG00000020957)	tmie (ENSDARG00000069423)	ENSDARG00000063451	higd1a (ENSDARG00000022303)	DSP (ENSDARG00000022309)	slc22a23 (ENSDARG00000078856)	tubb2 (ENSDARG00000039522)	ssx2ipa (ENSDARG00000039521)	ENSDARG00000078363	ENSDARG00000077130	exosc4 (ENSDARG00000103432)
Euteleosteomorpha	ANCESTRAL SPECIES	10	ENSGT00940000158746.k.a	ENSGT00940000158746.l	ENSGT00940000158746.k.b	ENSGT00940000155117.f.b	ENSGT00390000001114	ENSGT00390000006200	ENSGT00940000157937.a	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000154396.b.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301.a.b #33	ENSGT00940000155190.bb.b #34	ENSGT00390000006503.a #36	ENSGT00940000162256	ENSGT00940000155542.b	ENSGT00940000156746.b	ENSGT00940000158468.a.a	ENSGT00940000154819.a.a.b	ENSGT00990000204738	ENSGT00620000088018	ENSGT00390000003015.d
Acanthomorphata	ANCESTRAL SPECIES		ENSGT00550000075080	ENSGT00940000177007	ENSGT00940000154967.a.b.a.b	ENSGT00390000001114	ENSGT00940000155117.f.b	ENSGT00390000006200	ENSGT00940000157937.a	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a #29	ENSGT01010000223280	ENSGT00940000160185 #32	ENSGT00940000156301.a.b #33	ENSGT00940000156259.a.b	ENSGT00940000158629	ENSGT00390000015318.a	ENSGT00420000029753.b	ENSGT00390000016650.c.b	ENSGT00940000174970	ENSGT00940000154277.a	ENSGT00390000018130.b	ENSGT00940000166372	ENSGT01020000230412.A.c.b.c.b
Euacanthomorphacea	ANCESTRAL SPECIES	4	ENSGT00940000177007	ENSGT00940000154386	ENSGT00940000154967.b.a	ENSGT00940000155117.f.b	ENSGT00390000001114	ENSGT00390000006200	ENSGT00940000157937.a	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000169307	ENSGT00940000160185 #32	ENSGT00940000156301.a.b #33	ENSGT00940000156259.a.b	ENSGT00940000158629	ENSGT00390000015318.a	ENSGT00420000029753.b	ENSGT00390000016650.c.b	ENSGT00940000154277.a	ENSGT00390000018130.b	ENSGT00940000166372	ENSGT01020000230412.A.c.b.c.b	ENSGT00390000001523
Percomorphaceae	ANCESTRAL SPECIES	6	ENSGT00940000154386	ENSGT00940000154967.b.a	ENSGT00940000154967.a.b.a.b	ENSGT00940000155117.f.b	ENSGT00390000001114	ENSGT00390000006200	ENSGT00940000157937.a	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000169307	ENSGT00940000160185 #32	ENSGT00940000156301.a.b #33	ENSGT00940000156259.a.b	ENSGT00940000158629	ENSGT00390000015318.a	ENSGT00420000029753.b	ENSGT00390000016650.c.b	ENSGT00940000154277.a	ENSGT00390000018130.b	ENSGT00940000166372	ENSGT01020000230412.A.c.b.c.b	ENSGT00390000001523
Percomorphaceae_B	ANCESTRAL SPECIES	8	ENSGT00940000177007	ENSGT00940000154386	ENSGT00940000154967.b.a	ENSGT00940000155117.f.b	ENSGT00390000001114	ENSGT00390000006200	ENSGT00940000157937.a	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000169307	ENSGT00940000160185 #32	ENSGT00940000156301.a.b #33	ENSGT00940000156259.a.b	ENSGT00940000158629	ENSGT00390000015318.a	ENSGT00420000029753.b	ENSGT00390000016650.c.b	ENSGT00940000154277.a	ENSGT00390000018130.b	ENSGT00940000166372	ENSGT01020000230412.A.c.b.c.b	ENSGT00390000001523
Percomorphaceae_C	ANCESTRAL SPECIES	6	ENSGT00550000075080	ENSGT00940000154967.a.b.a.b	ENSGT00940000177007	ENSGT00940000155117.f.b	ENSGT00390000001114	ENSGT00390000006200	ENSGT00940000157937.a	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000169307	ENSGT00940000160185 #32	ENSGT00940000156301.a.b #33	ENSGT00940000156259.a.b	ENSGT00940000158629	ENSGT00390000015318.a	ENSGT00420000029753.b	ENSGT00390000016650.c.b	ENSGT00940000154277.a	ENSGT00390000018130.b	ENSGT00940000166372	ENSGT01020000230412.A.c.b.c.b	ENSGT00390000001523
Percomorphaceae_D	ANCESTRAL SPECIES	6	ENSGT00550000075080	ENSGT00940000177007	ENSGT00940000154967.a.b.a.b	ENSGT00940000155117.f.b	ENSGT00390000001114	ENSGT00390000006200	ENSGT00940000157937.a	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000169307	ENSGT00940000160185 #32	ENSGT00940000156301.a.b #33	ENSGT00940000156259.a.b	ENSGT00940000158629	ENSGT00390000015318.a	ENSGT00420000029753.b	ENSGT00390000016650.c.b	ENSGT00940000154277.a	ENSGT00390000018130.b	ENSGT00940000166372	ENSGT01020000230412.A.c.b.c.b	ENSGT00390000001523
Anabantaria	ANCESTRAL SPECIES	8	ENSGT00550000075080	ENSGT00940000177007	ENSGT00940000154967.a.b.a.b	ENSGT00940000155117.f.b	ENSGT00390000001114	ENSGT00390000006200	ENSGT00940000157937.a	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000169307	ENSGT00940000160185 #32	ENSGT00940000156301.a.b #33	ENSGT00940000156259.a.b	ENSGT00940000158629	ENSGT00390000015318.a	ENSGT00420000029753.b	ENSGT00390000016650.c.b	ENSGT00940000154277.a	ENSGT00390000018130.b	ENSGT00940000166372	ENSGT01020000230412.A.c.b.c.b	ENSGT00390000001523
Zig-zag eel	MODERN SPECIES	8	ENSMAMG00000002166	ENSMAMG00000025921	ENSMAMG00000002126	ENSMAMG00000002092	ENSMAMG00000002033	RO60 (ENSMAMG00000002004)	RGS2 (ENSMAMG00000001994)	rgs13 (ENSMAMG00000001988)	RGS1 (ENSMAMG00000001832)	rgs18 (ENSMAMG00000024725)	ENSMAMG00000001739	rgs5b (ENSMAMG00000001704)	ENSMAMG00000027602	ENSMAMG00000001656	ENSMAMG00000001605	ENSMAMG00000001591 #22	SLC35D1 (ENSMAMG00000001540) #27	MIER1 (ENSMAMG00000026666) #29	ENSMAMG00000001510	DYNLT5 (ENSMAMG00000001499) #32	ENSMAMG00000001485 #33	PIK3R3 (ENSMAMG00000001465)	IPP (ENSMAMG00000001378)	TMEM69 (ENSMAMG00000001362)	GPBP1L1 (ENSMAMG00000001301)	NASP (ENSMAMG00000001257)	prdx1 (ENSMAMG00000025842)	zte38 (ENSMAMG00000001169)	aldh9a1b (ENSMAMG00000001113)	uck2b (ENSMAMG00000001099)	czib (ENSMAMG00000000880)
Anabantoidei	ANCESTRAL SPECIES	18	ENSGT00550000075080	ENSGT00940000177007	ENSGT00940000154967.a.b.a.b	ENSGT00940000155117.f.b	ENSGT00390000001114	ENSGT00390000006200	ENSGT00940000157937.a	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000169307	ENSGT00940000160185 #32	ENSGT00940000156301.a.b #33	ENSGT00940000156259.a.b	ENSGT00940000158629	ENSGT00390000015318.a	ENSGT00420000029753.b	ENSGT00390000016650.c.b	ENSGT00940000154277.a	ENSGT00390000018130.b	ENSGT00940000166372	ENSGT01020000230412.A.c.b.c.b	ENSGT00390000001523
Climbing perch	MODERN SPECIES	8	ENSATEG00000021111	ENSATEG00000021091	ENSATEG00000021147	ENSATEG00000021189	CDC73 (ENSATEG00000021162)	RO60 (ENSATEG00000021195)	RGS2 (ENSATEG00000021214)	rgs13 (ENSATEG00000021218)	RGS1 (ENSATEG00000021230)	rgs18 (ENSATEG00000021270)	ENSATEG00000021285	rgs5b (ENSATEG00000021310)	ENSATEG00000021325	ENSATEG00000021357	ENSATEG00000021379	ENSATEG00000021402 #22	SLC35D1 (ENSATEG00000021409) #27	MIER1 (ENSATEG00000026755) #29	ENSATEG00000021447	DYNLT5 (ENSATEG00000021451) #32	SGIP1 (ENSATEG00000026094) #33	PIK3R3 (ENSATEG00000021460)	IPP (ENSATEG00000021477)	TMEM69 (ENSATEG00000027603)	GPBP1L1 (ENSATEG00000021496)	NASP (ENSATEG00000021512)	prdx1 (ENSATEG00000025582)	zte38 (ENSATEG00000000112)	aldh9a1b (ENSATEG00000000154)	uck2b (ENSATEG00000000205)	czib (ENSATEG00000000250)
Carangaria	ANCESTRAL SPECIES	5	ENSGT00940000155152.f.a	ENSGT00550000075080	ENSGT00940000154967.a.b.a.b	ENSGT00940000155117.f.b	ENSGT00390000001114	ENSGT00390000006200	ENSGT00940000157937.a	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000169307	ENSGT00940000160185 #32	ENSGT00940000156301.a.b #33	ENSGT00940000156259.a.b	ENSGT00940000158629	ENSGT00390000015318.a	ENSGT00420000029753.b	ENSGT00390000016650.c.b	ENSGT00940000154277.a	ENSGT00390000018130.b	ENSGT00940000166372	ENSGT01020000230412.A.c.b.c.b	ENSGT00390000001523
Carangaria_A	ANCESTRAL SPECIES	2	ENSGT00940000155152.f.a	ENSGT00550000075080	ENSGT00940000154967.a.b.a.b	ENSGT00940000155117.f.b	ENSGT00390000001114	ENSGT00390000006200	ENSGT00940000157937.a	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000169307	ENSGT00940000160185 #32	ENSGT00940000156301.a.b #33	ENSGT00940000156259.a.b	ENSGT00940000158629	ENSGT00390000015318.a	ENSGT00420000029753.b	ENSGT00390000016650.c.b	ENSGT00940000154277.a	ENSGT00390000018130.b	ENSGT00940000166372	ENSGT01020000230412.A.c.b.c.b	ENSGT00390000001523
Seriola	ANCESTRAL SPECIES		ENSGT00550000075080	ENSGT00940000154967.a.b.a.b.l	ENSGT00940000154967.a.b.a.b.k	ENSGT00940000155117.f.b	ENSGT00390000001114	ENSGT00390000006200	ENSGT00940000157937.a	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000169307	ENSGT00940000160185 #32	ENSGT00940000156301.a.b #33	ENSGT00940000156259.a.b	ENSGT00940000158629	ENSGT00390000015318.a	ENSGT00420000029753.b	ENSGT00390000016650.c.b	ENSGT00940000154277.a	ENSGT00390000018130.b	ENSGT00940000166372	ENSGT01020000230412.A.c.b.c.b	ENSGT00390000001523
Yellowtail amberjack	MODERN SPECIES	3153			cdc73 (ENSSLDG00000019786)	ENSSLDG00000019851	ro60 (ENSSLDG00000019857)	RGS2 (ENSSLDG00000019868)	rgs13 (ENSSLDG00000019881)	RGS1 (ENSSLDG00000019890)	rgs18 (ENSSLDG00000019903)	ENSSLDG00000019919	rgs5b (ENSSLDG00000019935)	ENSSLDG00000019954	ENSSLDG00000019966	DDR2 (ENSSLDG00000019977)	hsd17b7 (ENSSLDG00000019998)	ENSSLDG00000020011 #22	slc35d1b (ENSSLDG00000020038) #27	mier1b (ENSSLDG00000020062) #29	DYNLT5 (ENSSLDG00000020086) #32	ENSSLDG00000020092	SGIP1 (ENSSLDG00000020107) #33	PIK3R3 (ENSSLDG00000020141)	IPP (ENSSLDG00000020159)	TMEM69 (ENSSLDG00000020190)	GPBP1L1 (ENSSLDG00000020196)	NASP (ENSSLDG00000020216)	prdx1 (ENSSLDG00000020253)	zte38 (ENSSLDG00000020269)	aldh9a1b (ENSSLDG00000020284)	uck2b (ENSSLDG00000020296)	czib (ENSSLDG00000020320)
Greater amberjack	MODERN SPECIES	83	ZBTB41 (ENSSDUG00000009223)	ENSSDUG00000009206	ENSSDUG00000009183	ENSSDUG00000009178	cdc73 (ENSSDUG00000009108)	ro60 (ENSSDUG00000009083)	RGS2 (ENSSDUG00000009079)	rgs13 (ENSSDUG00000009072)	RGS1 (ENSSDUG00000009048)	rgs18 (ENSSDUG00000009033)	ENSSDUG00000009009	rgs5b (ENSSDUG00000008990)	ENSSDUG00000008965	DDR2 (ENSSDUG00000008922)	hsd17b7 (ENSSDUG00000008891)	ENSSDUG00000008857 #22	slc35d1b (ENSSDUG00000008813) #27	mier1b (ENSSDUG00000008766) #29	ENSSDUG00000008750	DYNLT5 (ENSSDUG00000008741) #32	SGIP1 (ENSSDUG00000008694) #33	PIK3R3 (ENSSDUG00000008677)	IPP (ENSSDUG00000008652)	TMEM69 (ENSSDUG00000008643)	GPBP1L1 (ENSSDUG00000008612)	NASP (ENSSDUG00000008596)	prdx1 (ENSSDUG00000007906)	zte38 (ENSSDUG00000007826)	aldh9a1b (ENSSDUG00000007754)	uck2b (ENSSDUG00000007721)	czib (ENSSDUG00000007703)
Pleuronectoidei	ANCESTRAL SPECIES	1	ENSGT00550000075080	ENSGT00940000154967.a.b.a.b	ENSGT00940000177007	ENSGT00390000001114	ENSGT00940000155117.f.b	ENSGT00390000006200	ENSGT00940000157937.a	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000169307	ENSGT00940000160185 #32	ENSGT00940000156301.a.b #33	ENSGT00940000156259.a.b	ENSGT00940000158629	ENSGT00390000015318.a	ENSGT00420000029753.b	ENSGT00390000016650.c.b	ENSGT00940000154277.a	ENSGT00390000018130.b	ENSGT00940000166372	ENSGT01020000230412.A.c.b.c.b	ENSGT00390000001523
Turbot	MODERN SPECIES	19	ENSSMAG00000008863	ENSSMAG00000008894	ENSSMAG00000008907	ENSSMAG00000008973	CDC73 (ENSSMAG00000009002)	RO60 (ENSSMAG00000009058)	RGS2 (ENSSMAG00000009108)	rgs13 (ENSSMAG00000035036)	RGS1 (ENSSMAG00000009178)	rgs18 (ENSSMAG00000009195)	ENSSMAG00000009216	rgs5b (ENSSMAG00000009228)	ENSSMAG00000009237	ENSSMAG00000009254	ENSSMAG00000009286	ENSSMAG00000009311 #22	SLC35D1 (ENSSMAG00000009325) #27	MIER1 (ENSSMAG00000009361) #29	ENSSMAG00000034269	DYNLT5 (ENSSMAG00000028767) #32	SGIP1 (ENSSMAG00000009394) #33	PIK3R3 (ENSSMAG00000009411)	IPP (ENSSMAG00000009426)	ENSSMAG00000029389	GPBP1L1 (ENSSMAG00000009472)	NASP (ENSSMAG00000009509)	prdx1 (ENSSMAG00000009521)	zte38 (ENSSMAG00000009530)	aldh9a1b (ENSSMAG00000009544)	uck2b (ENSSMAG00000009634)	czib (ENSSMAG00000009646)
Tongue sole	MODERN SPECIES	12	NASP (ENSCSEG00000010343)	GPBP1L1 (ENSCSEG00000010334)	TMEM69 (ENSCSEG00000010330)	IPP (ENSCSEG00000010295)	ahsg2 (ENSCSEG00000010291)	ENSCSEG00000010276	ENSCSEG00000010252	SGIP1 (ENSCSEG00000010221) #33	ENSCSEG00000010192	dynlt5 (ENSCSEG00000010198) #32	mier1b (ENSCSEG00000010173) #29	rgs5b (ENSCSEG00000010163)	ENSCSEG00000010154	DDR2 (ENSCSEG00000010135)	hsd17b7 (ENSCSEG00000010094)	ENSCSEG00000010078 #22	SLC35D1 (ENSCSEG00000010059) #27	ENSCSEG00000010038	rgs18 (ENSCSEG00000010024)	RGS1 (ENSCSEG00000010015)	rgs13 (ENSCSEG00000010007)	ro60 (ENSCSEG00000009989)	ENSCSEG00000009986	cdc73 (ENSCSEG00000009956)	ENSCSEG00000009949	ENSCSEG00000009908
Eupercaria	ANCESTRAL SPECIES	22	ENSGT00550000075080	ENSGT00940000154967.a.b.a.b	ENSGT00940000177007	ENSGT00940000155117.f.b	ENSGT00390000001114	ENSGT00390000006200	ENSGT00940000157937.a	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000169307	ENSGT00940000160185 #32	ENSGT00940000156301.a.b #33	ENSGT00940000156259.a.b	ENSGT00940000158629	ENSGT00390000015318.a	ENSGT00420000029753.b	ENSGT00390000016650.c.b	ENSGT00940000154277.a	ENSGT00390000018130.b	ENSGT00940000166372	ENSGT01020000230412.A.c.b.c.b	ENSGT00390000001523
Tetraodontidae	ANCESTRAL SPECIES																	ENSGT00520000055591.a.b #22
Fugu	MODERN SPECIES	14	ENSTRUG00000033493	ENSTRUG00000026855	ENSTRUG00000026024	ENSTRUG00000009643	cdc73 (ENSTRUG00000009352)	ro60 (ENSTRUG00000009656)	RGS2 (ENSTRUG00000009818)	rgs13 (ENSTRUG00000021618)	RGS1 (ENSTRUG00000009925)	rgs18 (ENSTRUG00000027116)	ENSTRUG00000010050	ttll9 (ENSTRUG00000010210)	rgs5b (ENSTRUG00000010340)	ENSTRUG00000030939	DDR2 (ENSTRUG00000010792)	SERBP1 (ENSTRUG00000011101) #22	SLC35D1 (ENSTRUG00000011389) #27	mier1b (ENSTRUG00000011602) #29	insl5b (ENSTRUG00000020467)	dynlt5 (ENSTRUG00000011784) #32	ENSTRUG00000032870 #33	PIK3R3 (ENSTRUG00000011941)	IPP (ENSTRUG00000012028)	TMEM69 (ENSTRUG00000029603)	GPBP1L1 (ENSTRUG00000012170)	NASP (ENSTRUG00000022427)	prdx1 (ENSTRUG00000012465)	zte38 (ENSTRUG00000020518)	aldh9a1b (ENSTRUG00000012589)	uck2b (ENSTRUG00000012683)	czib (ENSTRUG00000012792)
Eupecaria_A	ANCESTRAL SPECIES	8	ENSGT00940000154967.a.b.a.b	ENSGT00940000177007	ENSGT00940000154386	ENSGT00940000155117.f.b	ENSGT00390000001114	ENSGT00390000006200	ENSGT00940000157937.a	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000169307	ENSGT00940000160185 #32	ENSGT00940000156301.a.b #33	ENSGT00940000156259.a.b	ENSGT00940000158629	ENSGT00390000015318.a	ENSGT00420000029753.b	ENSGT00390000016650.c.b	ENSGT00940000154277.a	ENSGT00390000018130.b	ENSGT00940000166372	ENSGT01020000230412.A.c.b.c.b	ENSGT00390000001523
Ballan wrasse	MODERN SPECIES	10	ENSLBEG00000009465	ENSLBEG00000009504	ENSLBEG00000009524	ENSLBEG00000009549	cdc73 (ENSLBEG00000009583)	ENSLBEG00000009657	ro60 (ENSLBEG00000009672)	rgs13 (ENSLBEG00000009696)	RGS1 (ENSLBEG00000009713)	rgs18 (ENSLBEG00000009733)	ENSLBEG00000009766	rgs5b (ENSLBEG00000009784)	ENSLBEG00000009826	DDR2 (ENSLBEG00000009871)	hsd17b7 (ENSLBEG00000009917)	SERBP1 (ENSLBEG00000009964) #22	slc35d1b (ENSLBEG00000009996) #27	mier1b (ENSLBEG00000010066) #29	dynlt5 (ENSLBEG00000010131) #32	ENSLBEG00000010146	ENSLBEG00000010162 #33	PIK3R3 (ENSLBEG00000010240)	IPP (ENSLBEG00000010400)	TMEM69 (ENSLBEG00000010449)	GPBP1L1 (ENSLBEG00000010480)	NASP (ENSLBEG00000010558)	prdx1 (ENSLBEG00000010588)	zte38 (ENSLBEG00000010616)	aldh9a1b (ENSLBEG00000010650)	uck2b (ENSLBEG00000010696)	czib (ENSLBEG00000010737)
Eupecaria_B	ANCESTRAL SPECIES	8	ENSGT00550000075080	ENSGT00940000154967.a.b.a.b	ENSGT00940000177007	ENSGT00940000155117.f.b	ENSGT00390000001114	ENSGT00390000006200	ENSGT00940000157937.a	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000169307	ENSGT00940000160185 #32	ENSGT00940000156301.a.b #33	ENSGT00940000156259.a.b	ENSGT00940000158629	ENSGT00390000015318.a	ENSGT00420000029753.b	ENSGT00390000016650.c.b	ENSGT00940000154277.a	ENSGT00390000018130.b	ENSGT00940000166372	ENSGT01020000230412.A.c.b.c.b	ENSGT00390000001523
Eupecaria_C	ANCESTRAL SPECIES	10	ENSGT00550000075080	ENSGT00940000154967.a.b.a.b	ENSGT00940000177007	ENSGT00940000155117.f.b	ENSGT00390000001114	ENSGT00390000006200	ENSGT00940000157937.a	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000160185 #32	ENSGT00940000169307	ENSGT00940000156301.a.b #33	ENSGT00940000156259.a.b	ENSGT00940000158629	ENSGT00390000015318.a	ENSGT00420000029753.b	ENSGT00390000016650.c.b	ENSGT00940000154277.a	ENSGT00390000018130.b	ENSGT00940000166372	ENSGT01020000230412.A.c.b.c.b	ENSGT00390000001523
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	8	ENSGT00550000075080	ENSGT00940000154967.a.b.a.b	ENSGT00940000177007	ENSGT00940000155117.f.b	ENSGT00390000001114	ENSGT00390000006200	ENSGT00940000157937.a	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000160185 #32	ENSGT00940000169307	ENSGT00940000156301.a.b #33	ENSGT00940000156259.a.b	ENSGT00940000158629	ENSGT00390000015318.a	ENSGT00420000029753.b	ENSGT00390000016650.c.b	ENSGT00940000154277.a	ENSGT00390000018130.b	ENSGT00940000166372	ENSGT01020000230412.A.c.b.c.b	ENSGT00390000001523
European seabass	MODERN SPECIES		ENSDLAG00005019090	ENSDLAG00005017275	ENSDLAG00005019079	ENSDLAG00005019076	CDC73 (ENSDLAG00005019028)	RO60 (ENSDLAG00005018998)	RGS2 (ENSDLAG00005018985)	rgs13 (ENSDLAG00005027963)	RGS1 (ENSDLAG00005018975)	rgs18 (ENSDLAG00005032244)	ENSDLAG00005018965	rgs5b (ENSDLAG00005033480)	ENSDLAG00005018920	ENSDLAG00005018901	ENSDLAG00005028109	ENSDLAG00005029759 #22	ENSDLAG00005018566 #27	ENSDLAG00005018429	ENSDLAG00005018440 #29	ENSDLAG00005028022 #33	ENSDLAG00005018322	TMEM69 (ENSDLAG00005018218)	IPP (ENSDLAG00005018240)	NASP (ENSDLAG00005018172)	prdx1 (ENSDLAG00005031640)	zte38 (ENSDLAG00005018124)	aldh9a1b (ENSDLAG00005026735)	czib (ENSDLAG00005031433)	scp2a (ENSDLAG00005017705)	slc1a7a (ENSDLAG00005017586)	ENSDLAG00005017575
Large yellow croaker	MODERN SPECIES	483	ENSLCRG00005014086	ZBTB41 (ENSLCRG00005014087)	ENSLCRG00005014095	ENSLCRG00005014103	cdc73 (ENSLCRG00005014107)	ro60 (ENSLCRG00005014426)	RGS2 (ENSLCRG00005014428)	rgs13 (ENSLCRG00005014429)	RGS1 (ENSLCRG00005014432)	rgs18 (ENSLCRG00005014433)	ENSLCRG00005014435	rgs5b (ENSLCRG00005014436)	ENSLCRG00005014437	DDR2 (ENSLCRG00005014439)	hsd17b7 (ENSLCRG00005014585)	ENSLCRG00005014827 #22	slc35d1b (ENSLCRG00005014828) #27	mier1b (ENSLCRG00005014836) #29	dynlt5 (ENSLCRG00005002693) #32	ENSLCRG00005002700	ENSLCRG00005002723 #33	PIK3R3 (ENSLCRG00005002726)	IPP (ENSLCRG00005002738)	TMEM69 (ENSLCRG00005002759)	GPBP1L1 (ENSLCRG00005002765)	NASP (ENSLCRG00005002786)	prdx1 (ENSLCRG00005002792)	zte38 (ENSLCRG00005002797)	aldh9a1b (ENSLCRG00005002808)	uck2b (ENSLCRG00005003243)	czib (ENSLCRG00005003255)
Gilthead seabream	MODERN SPECIES	13	ENSSAUG00010006912	ZBTB41 (ENSSAUG00010006915)	ENSSAUG00010006919	cdc73 (ENSSAUG00010006952)	ENSSAUG00010006969	ro60 (ENSSAUG00010006970)	RGS2 (ENSSAUG00010006974)	rgs13 (ENSSAUG00010006976)	RGS1 (ENSSAUG00010006981)	rgs18 (ENSSAUG00010006983)	ENSSAUG00010006987	rgs5b (ENSSAUG00010006990)	ENSSAUG00010006991	DDR2 (ENSSAUG00010006996)	hsd17b7 (ENSSAUG00010007001)	ENSSAUG00010007026 #22	slc35d1b (ENSSAUG00010007030) #27	mier1b (ENSSAUG00010007092) #29	dynlt5 (ENSSAUG00010007404) #32	ENSSAUG00010007405	ENSSAUG00010007406 #33	PIK3R3 (ENSSAUG00010007407)	IPP (ENSSAUG00010007410)	TMEM69 (ENSSAUG00010007423)	GPBP1L1 (ENSSAUG00010007429)	NASP (ENSSAUG00010007431)	prdx1 (ENSSAUG00010007435)	zte38 (ENSSAUG00010007440)	aldh9a1b (ENSSAUG00010007448)	uck2b (ENSSAUG00010007472)	czib (ENSSAUG00010007473)
Perciformes	ANCESTRAL SPECIES	5	ENSGT00940000155152.f.a	ENSGT00550000075080	ENSGT00940000154967.a.b.a.b	ENSGT00940000155117.f.b	ENSGT00390000001114	ENSGT00390000006200	ENSGT00940000157937.a	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000169307	ENSGT00940000160185 #32	ENSGT00940000156301.a.b #33	ENSGT00940000156259.a.b	ENSGT00940000158629	ENSGT00390000015318.a	ENSGT00420000029753.b	ENSGT00390000016650.c.b	ENSGT00940000154277.a	ENSGT00390000018130.b	ENSGT00940000166372	ENSGT01020000230412.A.c.b.c.b	ENSGT00390000001523
Perciformes_a	ANCESTRAL SPECIES	24	ENSGT00940000156309.A.k	ENSGT00940000155152.f.a	ENSGT00550000075080	ENSGT00940000155117.f.b	ENSGT00390000001114	ENSGT00390000006200	ENSGT00940000157937.a	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000169307	ENSGT00940000160185 #32	ENSGT00940000156301.a.b #33	ENSGT00940000156259.a.b	ENSGT00940000158629	ENSGT00390000015318.a	ENSGT00420000029753.b	ENSGT00390000016650.c.b	ENSGT00940000154277.a	ENSGT00390000018130.b	ENSGT00940000166372	ENSGT01020000230412.A.c.b.c.b	ENSGT00390000001523
Pike perch	MODERN SPECIES	12	ENSSLUG00000003003	ENSSLUG00000002988	ZBTB41 (ENSSLUG00000002949)	ENSSLUG00000002903	ENSSLUG00000002885	cdc73 (ENSSLUG00000002661)	ro60 (ENSSLUG00000002632)	rgs13 (ENSSLUG00000002627)	ENSSLUG00000002626	rgs18 (ENSSLUG00000002619)	ENSSLUG00000002611	rgs5b (ENSSLUG00000002605)	ENSSLUG00000002582	DDR2 (ENSSLUG00000002561)	hsd17b7 (ENSSLUG00000002531)	ENSSLUG00000002513 #22	slc35d1b (ENSSLUG00000002463) #27	mier1b (ENSSLUG00000002437) #29	ENSSLUG00000002427	dynlt5 (ENSSLUG00000002421) #32	ENSSLUG00000002410	PIK3R3 (ENSSLUG00000001967)	IPP (ENSSLUG00000001846)	TMEM69 (ENSSLUG00000001840)	GPBP1L1 (ENSSLUG00000001808)	ENSSLUG00000001776	prdx1 (ENSSLUG00000001763)	zte38 (ENSSLUG00000001750)	aldh9a1b (ENSSLUG00000001698)	uck2b (ENSSLUG00000001642)	czib (ENSSLUG00000001609)
Cottioidei	ANCESTRAL SPECIES	15	ENSGT00940000156309.A.k	ENSGT00940000155152.f.a	ENSGT00550000075080	ENSGT00940000154967.a.b.a.b	ENSGT00940000155117.f.b	ENSGT00390000001114	ENSGT00940000157937.a	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000169307	ENSGT00940000160185 #32	ENSGT00940000156301.a.b #33	ENSGT00940000156259.a.b	ENSGT00940000158629	ENSGT00390000015318.a	ENSGT00420000029753.b	ENSGT00390000016650.c.b	ENSGT00940000154277.a	ENSGT00390000018130.b	ENSGT00940000166372	ENSGT01020000230412.A.c.b.c.b	ENSGT00390000001523
Lumpfish	MODERN SPECIES	8	ENSCLMG00005004631	ZBTB41 (ENSCLMG00005004610)	ENSCLMG00005004584	ENSCLMG00005004565	ENSCLMG00005004556	cdc73 (ENSCLMG00005004413)	ENSCLMG00005004375	rgs13 (ENSCLMG00005011908)	RGS1 (ENSCLMG00005011907)	rgs18 (ENSCLMG00005011906)	ENSCLMG00005011827	rgs5b (ENSCLMG00005011824)	ENSCLMG00005011819	DDR2 (ENSCLMG00005011795)	HSD17B7 (ENSCLMG00005011787)	ENSCLMG00005011784 #22	slc35d1b (ENSCLMG00005011757) #27	mier1b (ENSCLMG00005011747) #29	ENSCLMG00005011745	dynlt5 (ENSCLMG00005011744) #32	ENSCLMG00005011743 #33	PIK3R3 (ENSCLMG00005011742)	IPP (ENSCLMG00005011741)	ENSCLMG00005011740	GPBP1L1 (ENSCLMG00005011738)	NASP (ENSCLMG00005011737)	prdx1 (ENSCLMG00005011731)	zte38 (ENSCLMG00005011729)	aldh9a1b (ENSCLMG00005011727)	uck2b (ENSCLMG00005011724)	czib (ENSCLMG00005011717)
Stickleback	MODERN SPECIES	2	ENSGACG00000016099	ENSGACG00000016101	ZBTB41 (ENSGACG00000016102)	ENSGACG00000016104	cdc73 (ENSGACG00000016106)	ENSGACG00000016113	cdc73 (ENSGACG00000016114)	rgs13 (ENSGACG00000016116)	ENSGACG00000016121	rgs18 (ENSGACG00000016122)	ENSGACG00000016124	rgs5b (ENSGACG00000016127)	ENSGACG00000016130	DDR2 (ENSGACG00000016132)	hsd17b7 (ENSGACG00000016134)	SERBP1 (ENSGACG00000016146) #22	slc35d1b (ENSGACG00000016148) #27	mier1b (ENSGACG00000016152) #29	ENSGACG00000016154	DYNLT5 (ENSGACG00000016155) #32	SGIP1 (ENSGACG00000016156) #33	PIK3R3 (ENSGACG00000016159)	IPP (ENSGACG00000016161)	GPBP1L1 (ENSGACG00000016163)	NASP (ENSGACG00000016167)	prdx1 (ENSGACG00000016172)	zte38 (ENSGACG00000016175)	aldh9a1b (ENSGACG00000016177)	uck2b (ENSGACG00000016188)	scp2a (ENSGACG00000016189)	slc1a7a (ENSGACG00000016200)
Ovalentaria	ANCESTRAL SPECIES	5	ENSGT00550000075080	ENSGT00940000154967.a.b.a.b	ENSGT00940000177007	ENSGT00390000001114	ENSGT00940000155117.f.b	ENSGT00390000006200	ENSGT00940000157937.a	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000169307	ENSGT00940000160185 #32	ENSGT00940000156301.a.b #33	ENSGT00940000156259.a.b	ENSGT00940000158629	ENSGT00390000015318.a	ENSGT00420000029753.b	ENSGT00390000016650.c.b	ENSGT00940000154277.a	ENSGT00390000018130.b	ENSGT00940000166372	ENSGT01020000230412.A.c.b.c.b	ENSGT00390000001523
Atherinomorphae	ANCESTRAL SPECIES	4	ENSGT00940000154386	ENSGT00940000154967.a.b.a.b	ENSGT00940000177007	ENSGT00390000001114	ENSGT00940000155117.f.b	ENSGT00390000006200	ENSGT00940000157937.a	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000169307	ENSGT00940000160185 #32	ENSGT00940000156301.a.b #33	ENSGT00940000156259.a.b	ENSGT00940000158629	ENSGT00390000015318.a	ENSGT00420000029753.b	ENSGT00390000016650.c.b	ENSGT00940000154277.a	ENSGT00390000018130.b	ENSGT00940000166372	ENSGT01020000230412.A.c.b.c.b	ENSGT00390000001523
Cyprinodontiformes	ANCESTRAL SPECIES	5	ENSGT00940000154967.a.b.a.b	ENSGT00940000177007	ENSGT00390000001114	ENSGT00940000155117.f.b	ENSGT00390000006200	ENSGT00940000157937.a	ENSGT00940000157937.b.c	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000160185 #32	ENSGT00940000169307	ENSGT00940000156301.a.b #33	ENSGT00940000156259.a.b	ENSGT00940000158629	ENSGT00390000015318.a	ENSGT00420000029753.b	ENSGT00390000016650.c.b	ENSGT00940000154277.a	ENSGT00390000018130.b	ENSGT00940000166372	ENSGT01020000230412.A.c.b.c.b	ENSGT00390000001523
Aplocheiloidei	ANCESTRAL SPECIES	19	ENSGT00550000075080	ENSGT00940000154386	ENSGT00940000154967.a.b.a.b	ENSGT00390000001114	ENSGT00940000155117.f.b	ENSGT00390000006200	ENSGT00940000157937.a	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000160185 #32	ENSGT00940000156301.a.b #33	ENSGT00940000156259.a.b	ENSGT00940000158629	ENSGT00390000015318.a	ENSGT00420000029753.b	ENSGT00390000016650.c.b	ENSGT00940000154277.a	ENSGT00390000018130.b	ENSGT00940000166372	ENSGT01020000230412.A.c.b.c.b	ENSGT00390000001523	ENSGT00940000154327.a
Mangrove rivulus	MODERN SPECIES	52	ENSKMAG00000004792	ENSKMAG00000004812	ENSKMAG00000004841	cdc73 (ENSKMAG00000004877)	ENSKMAG00000004943	ro60 (ENSKMAG00000004951)	RGS2 (ENSKMAG00000004963)	rgs13 (ENSKMAG00000004972)	RGS1 (ENSKMAG00000004979)	rgs18 (ENSKMAG00000004989)	ENSKMAG00000005006	rgs5b (ENSKMAG00000005020)	ENSKMAG00000005031	DDR2 (ENSKMAG00000005054)	hsd17b7 (ENSKMAG00000005084)	ENSKMAG00000005104 #22	SLC35D1 (ENSKMAG00000005155) #27	mier1b (ENSKMAG00000005229) #29	DYNLT5 (ENSKMAG00000005286) #32	SGIP1 (ENSKMAG00000005307) #33	PIK3R3 (ENSKMAG00000005338)	IPP (ENSKMAG00000005362)	TMEM69 (ENSKMAG00000005412)	GPBP1L1 (ENSKMAG00000005422)	NASP (ENSKMAG00000005439)	ENSKMAG00000005469	prdx1 (ENSKMAG00000005480)	aldh9a1b (ENSKMAG00000005501)	uck2b (ENSKMAG00000005551)	czib (ENSKMAG00000005593)	scp2a (ENSKMAG00000005617)
Turquoise killifish	MODERN SPECIES	1618	EIF4A2 (ENSNFUG00015010614)	b3gnt5b (ENSNFUG00015010556)	ENSNFUG00015010529	PIK3CA (ENSNFUG00015010513)	ENSNFUG00015010507	ENSNFUG00015010504	ENSNFUG00015010482	ENSNFUG00015010471	ephb3a (ENSNFUG00015010450)	ENSNFUG00015010444	FAM5C (ENSNFUG00015010434)	rgs5b (ENSNFUG00015010426)	CU693440.1 (ENSNFUG00015010396)	DDR2 (ENSNFUG00015010211)	hsd17b7 (ENSNFUG00015010154)	ENSNFUG00015010129 #22	SLC35D1 (ENSNFUG00015010080) #27	mier1b (ENSNFUG00015010033) #29	ENSNFUG00015010021 #32	ENSNFUG00015010017 #33	Nfu_g_1_020146 (ENSNFUG00015009835)	IPP (ENSNFUG00015009746)	Nfu_g_1_020255 (ENSNFUG00015009730)	GPBP1L1 (ENSNFUG00015009715)	ENSNFUG00015009687	ENSNFUG00015009673	prdx1 (ENSNFUG00015009619)	zte38 (ENSNFUG00015009562)	aldh9a1b (ENSNFUG00015008589)	uck2a (ENSNFUG00015008482)	ENSNFUG00015008464
Cyprinodontoidei	ANCESTRAL SPECIES	2	ENSGT00940000154967.a.b.a.b	ENSGT00940000177007.a.a	ENSGT00940000154386	ENSGT00390000001114	ENSGT00940000155117.f.b	ENSGT00390000006200	ENSGT00940000157937.b.c	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000169307	ENSGT00940000160185 #32	ENSGT00390000008608	ENSGT00530000063347.A.a	ENSGT00950000183104.B.a.a	ENSGT00940000155190.bb.b #34	ENSGT00390000006503.a #36	ENSGT00940000155542.b	ENSGT00940000156746.b	ENSGT00940000158468.a.a	ENSGT00940000154819.a.a.b	ENSGT00390000003015.d	ENSGT00940000176936
Poeciliinae	ANCESTRAL SPECIES	6	ENSGT00940000154967.a.b.a.b	ENSGT00940000177007.a.a	ENSGT00390000001114	ENSGT00940000155117.f.b	ENSGT00390000006200	ENSGT00940000157937.b.c	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000164769	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000160185 #32	ENSGT00390000008608	ENSGT00530000063347.A.a	ENSGT00950000183104.B.a.a	ENSGT00940000155190.bb.b #34	ENSGT00390000006503.a #36	ENSGT00940000155542.b	ENSGT00940000156746.b	ENSGT00940000158468.a.a	ENSGT00940000154819.a.a.b	ENSGT00390000003015.d	ENSGT00940000176936	ENSGT00940000161304.a.b
Poecilia	ANCESTRAL SPECIES	19	ENSGT00940000177007.a.a	ENSGT00940000154386	ENSGT00390000001114	ENSGT00940000155117.f.b	ENSGT00390000006200	ENSGT00940000157937.b.c	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000164769	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000160185 #32	ENSGT00390000008608	ENSGT00530000063347.A.a	ENSGT00950000183104.B.a.a	ENSGT00940000155190.bb.b #34	ENSGT00390000006503.a #36	ENSGT00940000155542.b	ENSGT00940000156746.b	ENSGT00940000158468.a.a	ENSGT00940000154819.a.a.b	ENSGT00390000003015.d	ENSGT00940000176936	ENSGT00940000161304.a.b
NAME_6	ANCESTRAL SPECIES	50	ENSGT00940000154967.a.b.a.b	ENSGT00390000001114	ENSGT00940000155117.f.b	ENSGT00390000006200	ENSGT00940000157937.b.c	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000164769	ENSGT00940000165058.b	ENSGT00950000183004.a.a.a.b.d	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000160185 #32	ENSGT00390000008608	ENSGT00530000063347.A.a	ENSGT00950000183104.B.a.a	ENSGT00940000155190.bb.b #34	ENSGT00390000006503.a #36	ENSGT00940000155542.b	ENSGT00940000156746.b	ENSGT00940000158468.a.a	ENSGT00940000154819.a.a.b	ENSGT00390000003015.d	ENSGT00940000161304.a.b	ENSGT00940000156073.c.a.b
Amazon molly	MODERN SPECIES	318	MFAP4 (ENSPFOG00000023765)	cdc73 (ENSPFOG00000006725)	ENSPFOG00000020073	ro60 (ENSPFOG00000006974)	ENSPFOG00000024043	rgs13 (ENSPFOG00000007049)	RGS1 (ENSPFOG00000007127)	rgs18 (ENSPFOG00000007165)	ENSPFOG00000007241	ENSPFOG00000007255	fam3a (ENSPFOG00000007357)	rgs5b (ENSPFOG00000007380)	ENSPFOG00000007434	ENSPFOG00000007533	hsd17b7 (ENSPFOG00000023149)	SERBP1 (ENSPFOG00000007788) #22	slc35d1b (ENSPFOG00000007855) #27	mier1b (ENSPFOG00000007859) #29	DYNLT5 (ENSPFOG00000007932) #32	mgst3a (ENSPFOG00000007961)	ENSPFOG00000007967	FZR1 (ENSPFOG00000008112)	ENSPFOG00000008210 #34	ENSPFOG00000024325	LEPROT (ENSPFOG00000008551) #36	PGM1 (ENSPFOG00000008561)	ENSPFOG00000008863	ENSPFOG00000008865	LRP8 (ENSPFOG00000008908)	tmem125b (ENSPFOG00000020074)	SHISAL2A (ENSPFOG00000009076)
Sailfin molly	MODERN SPECIES	12	ENSPLAG00000009107	cdc73 (ENSPLAG00000009096)	ENSPLAG00000009040	ro60 (ENSPLAG00000009027)	ENSPLAG00000009020	rgs13 (ENSPLAG00000009006)	RGS1 (ENSPLAG00000008997)	rgs18 (ENSPLAG00000008969)	ENSPLAG00000008943	ENSPLAG00000008926	fam3a (ENSPLAG00000008905)	rgs5b (ENSPLAG00000008894)	ENSPLAG00000008888	ENSPLAG00000008855	hsd17b7 (ENSPLAG00000008813)	ENSPLAG00000008801 #22	slc35d1b (ENSPLAG00000008787) #27	mier1b (ENSPLAG00000008742) #29	DYNLT5 (ENSPLAG00000008736) #32	mgst3a (ENSPLAG00000008721)	ENSPLAG00000008702	FZR1 (ENSPLAG00000008648)	ENSPLAG00000008594 #34
Guppy	MODERN SPECIES	447	ENSPREG00000005775	ENSPREG00000005764	cdc73 (ENSPREG00000005705)	ro60 (ENSPREG00000005674)	ENSPREG00000005655	rgs13 (ENSPREG00000005649)	RGS1 (ENSPREG00000005638)	rgs18 (ENSPREG00000005604)	ENSPREG00000005585	fam3a (ENSPREG00000005570)	ENSPREG00000005560	rgs5b (ENSPREG00000005548)	ENSPREG00000005536	DDR2 (ENSPREG00000005483)	hsd17b7 (ENSPREG00000005416)	SERBP1 (ENSPREG00000005399) #22	slc35d1b (ENSPREG00000005375) #27	mier1b (ENSPREG00000005356) #29	DYNLT5 (ENSPREG00000005338) #32	mgst3a (ENSPREG00000005308)	ENSPREG00000005243	FZR1 (ENSPREG00000005211)	ENSPREG00000005074 #34	LEPROT (ENSPREG00000005025) #36	PGM1 (ENSPREG00000005002)	ENSPREG00000004983	ENSPREG00000004963	LRP8 (ENSPREG00000004944)	tmem125b (ENSPREG00000004914)	ENSPREG00000004885	ENSPREG00000004871
Platyfish	MODERN SPECIES	20	ENSXMAG00000022747	ENSXMAG00000027967	cdc73 (ENSXMAG00000004807)	ENSXMAG00000019561	ro60 (ENSXMAG00000004825)	ENSXMAG00000025681	rgs13 (ENSXMAG00000024646)	RGS1 (ENSXMAG00000004848)	rgs18 (ENSXMAG00000028350)	ENSXMAG00000004857	ENSXMAG00000019441	rgs5b (ENSXMAG00000019234)	ENSXMAG00000012606	DDR2 (ENSXMAG00000012574)	hsd17b7 (ENSXMAG00000012536)	ENSXMAG00000012527 #22	slc35d1b (ENSXMAG00000019216) #27	mier1b (ENSXMAG00000019201) #29	DYNLT5 (ENSXMAG00000026215) #32	mgst3a (ENSXMAG00000019191)	ENSXMAG00000019173	FZR1 (ENSXMAG00000019162)	ENSXMAG00000019106 #34	LEPROT (ENSXMAG00000023048) #36	PGM1 (ENSXMAG00000019083)	ANGPTL3 (ENSXMAG00000000947)	ENSXMAG00000000944	LRP8 (ENSXMAG00000000915)	tmem125b (ENSXMAG00000019647)	ENSXMAG00000024763	SHISAL2A (ENSXMAG00000011024)
NAME_4	ANCESTRAL SPECIES	35	ENSGT00550000075080	ENSGT00940000154386	ENSGT00940000154967.a.b.a.b	ENSGT00390000001114	ENSGT00940000155117.f.b	ENSGT00390000006200	ENSGT00940000157937.b.c	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f.b	ENSGT00390000013340.c	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000169307.a	ENSGT00940000160185 #32	ENSGT00390000008608	ENSGT00530000063347.A.a	ENSGT00950000183104.B.a.a	ENSGT00940000155190.bb.b #34	ENSGT00390000006503.a #36	ENSGT00940000155542.b	ENSGT00940000156746.b	ENSGT00940000158468.a.a	ENSGT00940000154819.a.a.b	ENSGT00390000003015.d	ENSGT00940000176936
Mummichog	MODERN SPECIES	2184	ENSFHEG00000016246	ENSFHEG00000016224	cdc73 (ENSFHEG00000016189)	ENSFHEG00000016134	ro60 (ENSFHEG00000016128)	ENSFHEG00000016112	rgs13 (ENSFHEG00000016100)	RGS1 (ENSFHEG00000016089)	rgs18 (ENSFHEG00000015981)	TSSK2 (ENSFHEG00000015958)	ENSFHEG00000015938	rgs5b (ENSFHEG00000015865)	ENSFHEG00000015861	DDR2 (ENSFHEG00000015840)	hsd17b7 (ENSFHEG00000015801)	ENSFHEG00000000385 #22	slc35d1b (ENSFHEG00000015796) #27	mier1b (ENSFHEG00000015788) #29	DYNLT5 (ENSFHEG00000015778) #32	ENSFHEG00000000382	mgst3a (ENSFHEG00000015746)	ENSFHEG00000015719	FZR1 (ENSFHEG00000015703)	ENSFHEG00000015619 #34	ENSFHEG00000015511 #36	PGM1 (ENSFHEG00000015500)	ENSFHEG00000015462	ENSFHEG00000015453	LRP8 (ENSFHEG00000015441)	ENSFHEG00000015420	ENSFHEG00000015413
Sheepshead minnow	MODERN SPECIES	169	ENSCVAG00000008213	cdc73 (ENSCVAG00000008207)	ENSCVAG00000008163	ro60 (ENSCVAG00000008160)	ENSCVAG00000008155	rgs13 (ENSCVAG00000008116)	RGS1 (ENSCVAG00000008108)	rgs18 (ENSCVAG00000008100)	ENSCVAG00000008093	rgs5b (ENSCVAG00000008083)	ENSCVAG00000008070	ENSCVAG00000008063	DDR2 (ENSCVAG00000000684)	ENSCVAG00000008029	hsd17b7 (ENSCVAG00000008013)	ENSCVAG00000000217 #22	SLC35D1 (ENSCVAG00000007996) #27	mier1b (ENSCVAG00000007984) #29	ENSCVAG00000007968	DYNLT5 (ENSCVAG00000007940) #32	mgst3a (ENSCVAG00000007930)	ENSCVAG00000007910	FZR1 (ENSCVAG00000007869)	ENSCVAG00000007809 #34
Oryzias	ANCESTRAL SPECIES	12	ENSGT00940000154967.a.b.a.b.s	ENSGT00940000177007	ENSGT00940000154967.a.b.a.b.t	ENSGT00940000155117.f.b	ENSGT00390000001114	ENSGT00390000006200	ENSGT00940000157937.a	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000169307	ENSGT00940000156301.a.b #33	ENSGT00940000156259.a.b	ENSGT00940000158629	ENSGT00390000015318.a	ENSGT00420000029753.b	ENSGT00390000016650.c.b	ENSGT00940000154277.a	ENSGT00390000018130.b	ENSGT00940000166372	ENSGT01020000230412.A.c.b.c.b	ENSGT00390000001523	ENSGT00940000154327.a
Oryzias_b	ANCESTRAL SPECIES	8	ENSGT00940000154967.a.b.a.b.s	ENSGT00940000177007	ENSGT00940000154967.a.b.a.b.t	ENSGT00940000155117.f.b	ENSGT00390000001114	ENSGT00390000006200	ENSGT00940000157937.a	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000169307	ENSGT00940000156301.a.b #33	ENSGT00940000156259.a.b	ENSGT00940000158629	ENSGT00390000015318.a	ENSGT00420000029753.b	ENSGT00390000016650.c.b	ENSGT00940000154277.a	ENSGT00390000018130.b	ENSGT00940000166372	ENSGT01020000230412.A.c.b.c.b	ENSGT00390000001523	ENSGT00940000154327.a
Indian medaka	MODERN SPECIES	10	ENSOMEG00000010667	ENSOMEG00000010537	cdc73 (ENSOMEG00000010509)	ENSOMEG00000010450	ro60 (ENSOMEG00000010440)	RGS2 (ENSOMEG00000010421)	rgs13 (ENSOMEG00000010405)	RGS1 (ENSOMEG00000010386)	rgs18 (ENSOMEG00000010368)	ENSOMEG00000010347	ENSOMEG00000010331	rgs5b (ENSOMEG00000010299)	ENSOMEG00000010272	DDR2 (ENSOMEG00000010222)	hsd17b7 (ENSOMEG00000010141)	SERBP1 (ENSOMEG00000010108) #22	SLC35D1 (ENSOMEG00000010065) #27	mier1b (ENSOMEG00000010029) #29	ENSOMEG00000010000	SGIP1 (ENSOMEG00000009986) #33	PIK3R3 (ENSOMEG00000009969)	IPP (ENSOMEG00000009935)	TMEM69 (ENSOMEG00000009900)	GPBP1L1 (ENSOMEG00000009887)	NASP (ENSOMEG00000009853)	prdx1 (ENSOMEG00000009829)	zte38 (ENSOMEG00000009773)	aldh9a1b (ENSOMEG00000009792)	uck2b (ENSOMEG00000000238)	czib (ENSOMEG00000009714)	scp2a (ENSOMEG00000009665)
Javanese ricefish	MODERN SPECIES	8	cdc73 (ENSOJAG00000012923)	ro60 (ENSOJAG00000012838)	RGS2 (ENSOJAG00000012784)	rgs13 (ENSOJAG00000012773)	RGS1 (ENSOJAG00000012769)	rgs18 (ENSOJAG00000012759)	ENSOJAG00000012747	ENSOJAG00000012704	ABCD2 (ENSOJAG00000011409)	SLC2A13 (ENSOJAG00000011394)	ENSOJAG00000011367	rgs5b (ENSOJAG00000011347)	ENSOJAG00000011342	DDR2 (ENSOJAG00000010795)	hsd17b7 (ENSOJAG00000010747)	ENSOJAG00000010738 #22	slc35d1b (ENSOJAG00000010720) #27	mier1b (ENSOJAG00000010471) #29	ENSOJAG00000010437	SGIP1 (ENSOJAG00000010424) #33	PIK3R3 (ENSOJAG00000010407)	IPP (ENSOJAG00000010283)	TMEM69 (ENSOJAG00000010273)	GPBP1L1 (ENSOJAG00000010166)	NASP (ENSOJAG00000010148)	prdx1 (ENSOJAG00000010112)	zte38 (ENSOJAG00000010102)	aldh9a1b (ENSOJAG00000009770)	uck2b (ENSOJAG00000009687)	czib (ENSOJAG00000009648)	scp2a (ENSOJAG00000008320)
Oryzias_a	ANCESTRAL SPECIES	7	ENSGT00940000177007	ENSGT00940000154967.a.b.a.b.t	ENSGT00940000155117.f.b	ENSGT00390000001114	ENSGT00390000006200	ENSGT00940000157937.a	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a.c	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00940000157337.b	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000169307	ENSGT00940000156301.a.b #33	ENSGT00940000156259.a.b	ENSGT00940000158629	ENSGT00390000015318.a	ENSGT00420000029753.b	ENSGT00390000016650.c.b	ENSGT00940000154277.a	ENSGT00390000018130.b	ENSGT00940000166372	ENSGT01020000230412.A.c.b.c.b	ENSGT00390000001523	ENSGT00940000154327.a
Japanese Medaka HdrR	MODERN SPECIES	8	ENSORLG00000026386	ENSORLG00000030254	ENSORLG00000024941	cdc73 (ENSORLG00000022564)	ro60 (ENSORLG00000010951)	RGS2 (ENSORLG00000030580)	rgs13 (ENSORLG00000010931)	RGS1 (ENSORLG00000010923)	rgs18 (ENSORLG00000010916)	ENSORLG00000010899	rgs5b (ENSORLG00000010887)	ENSORLG00000010871	ENSORLG00000010857	HSD17B7 (ENSORLG00000010814)	ENSORLG00000023634	SERBP1 (ENSORLG00000010782) #22	slc35d1b (ENSORLG00000010746) #27	mier1b (ENSORLG00000010703) #29	ENSORLG00000021929	SGIP1 (ENSORLG00000010693) #33	PIK3R3 (ENSORLG00000010655)	IPP (ENSORLG00000010621)	TMEM69 (ENSORLG00000010592)	GPBP1L1 (ENSORLG00000010584)	NASP (ENSORLG00000010548)	prdx1 (ENSORLG00000010533)	zte38 (ENSORLG00000010523)	aldh9a1b (ENSORLG00000010514)	uck2b (ENSORLG00000010485)	czib (ENSORLG00000010467)	scp2a (ENSORLG00000010459)
Chinese medaka	MODERN SPECIES	720	EDNRB (ENSOSIG00000007752)	SLC25A30 (ENSOSIG00000007751)	ENSOSIG00000007749	ENSOSIG00000007748	ENSOSIG00000007747	ro60 (ENSOSIG00000007746)	ENSOSIG00000007742	rgs13 (ENSOSIG00000007738)	RGS1 (ENSOSIG00000007734)	rgs18 (ENSOSIG00000007731)	ENSOSIG00000007727	ENSOSIG00000007722	DDR2 (ENSOSIG00000007607)	hsd17b7 (ENSOSIG00000007601)	ENSOSIG00000007598	ENSOSIG00000007593 #22	slc35d1b (ENSOSIG00000007521) #27	mier1b (ENSOSIG00000007351) #29	ENSOSIG00000007348	SGIP1 (ENSOSIG00000007343) #33	PIK3R3 (ENSOSIG00000007340)	IPP (ENSOSIG00000007336)	TMEM69 (ENSOSIG00000007332)	GPBP1L1 (ENSOSIG00000007328)	NASP (ENSOSIG00000007325)	prdx1 (ENSOSIG00000007302)	zte38 (ENSOSIG00000007300)	aldh9a1b (ENSOSIG00000006680)	uck2b (ENSOSIG00000006675)	czib (ENSOSIG00000006673)	scp2a (ENSOSIG00000006629)
Ovalentaria_B	ANCESTRAL SPECIES	6	ENSGT00550000075080	ENSGT00940000154967.a.b.a.b	ENSGT00940000177007	ENSGT00390000001114	ENSGT00940000155117.f.b	ENSGT00390000006200	ENSGT00940000157937.a	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000169307	ENSGT00940000160185 #32	ENSGT00940000156301.a.b #33	ENSGT00940000156259.a.b	ENSGT00940000158629	ENSGT00390000015318.a	ENSGT00420000029753.b	ENSGT00390000016650.c.b	ENSGT00940000154277.a	ENSGT00390000018130.b	ENSGT00940000166372	ENSGT01020000230412.A.c.b.c.b	ENSGT00390000001523
Pomacentridae	ANCESTRAL SPECIES	6	ENSGT00940000154386	ENSGT00940000154967.a.b.a.b	ENSGT00940000177007	ENSGT00390000001114	ENSGT00940000155117.f.b	ENSGT00390000006200	ENSGT00940000157937.a	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a.h #29	ENSGT00940000160185 #32	ENSGT00940000156301.a.b #33	ENSGT00940000156259.a.b	ENSGT00940000158629	ENSGT00390000015318.a	ENSGT00420000029753.b	ENSGT00390000016650.c.b	ENSGT00940000154277.a	ENSGT00390000018130.b	ENSGT00940000166372	ENSGT01020000230412.A.c.b.c.b	ENSGT00390000001523	ENSGT00940000154327.a
Bicolor damselfish	MODERN SPECIES	236	ENSSPAG00000003040	ENSSPAG00000003060	cdc73 (ENSSPAG00000003094)	ENSSPAG00000003162	ro60 (ENSSPAG00000003171)	RGS2 (ENSSPAG00000003189)	rgs13 (ENSSPAG00000003199)	RGS1 (ENSSPAG00000003221)	rgs18 (ENSSPAG00000003339)	ENSSPAG00000003363	rgs5b (ENSSPAG00000003425)	ENSSPAG00000003438	ENSSPAG00000003446	ENSSPAG00000003457	hsd17b7 (ENSSPAG00000003494)	ENSSPAG00000003541 #22	slc35d1b (ENSSPAG00000003558) #27	mier1b (ENSSPAG00000003606) #29	DYNLT5 (ENSSPAG00000003656) #32	ENSSPAG00000003663 #33	PIK3R3 (ENSSPAG00000003686)	IPP (ENSSPAG00000003706)	TMEM69 (ENSSPAG00000003747)	GPBP1L1 (ENSSPAG00000003767)	NASP (ENSSPAG00000003794)	prdx1 (ENSSPAG00000003816)	zte38 (ENSSPAG00000003829)	aldh9a1b (ENSSPAG00000003852)	uck2b (ENSSPAG00000003894)	czib (ENSSPAG00000003930)	scp2a (ENSSPAG00000003965)
Pomacentridae_A	ANCESTRAL SPECIES	18	ENSGT00550000075080	ENSGT00940000154386	ENSGT00940000154967.a.b.a.b	ENSGT00940000155117.f.b	ENSGT00390000001114	ENSGT00390000006200	ENSGT00940000157937.a	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a.h #29	ENSGT00940000160185 #32	ENSGT00940000156301.a.b #33	ENSGT00940000156259.a.b	ENSGT00940000158629	ENSGT00390000015318.a	ENSGT00420000029753.b	ENSGT00390000016650.c.b	ENSGT00940000154277.a	ENSGT00390000018130.b	ENSGT00940000166372	ENSGT01020000230412.A.c.b.c.b	ENSGT00390000001523	ENSGT00940000154327.a
Spiny chromis	MODERN SPECIES	34	ZBTB41 (ENSAPOG00000015747)	ENSAPOG00000015776	ENSAPOG00000015807	ENSAPOG00000015814	cdc73 (ENSAPOG00000015894)	ro60 (ENSAPOG00000015903)	RGS2 (ENSAPOG00000015909)	rgs13 (ENSAPOG00000000901)	RGS1 (ENSAPOG00000015991)	rgs18 (ENSAPOG00000016018)	ENSAPOG00000000450	rgs5b (ENSAPOG00000016064)	ENSAPOG00000016106	DDR2 (ENSAPOG00000016172)	hsd17b7 (ENSAPOG00000016179)	ENSAPOG00000016190 #22	SLC35D1 (ENSAPOG00000016249) #27	mier1b (ENSAPOG00000016257) #29	dynlt5 (ENSAPOG00000016267) #32	ENSAPOG00000016288 #33	ENSAPOG00000016299	IPP (ENSAPOG00000016359)	TMEM69 (ENSAPOG00000016371)	GPBP1L1 (ENSAPOG00000016379)	NASP (ENSAPOG00000016388)	prdx1 (ENSAPOG00000016399)	zte38 (ENSAPOG00000016484)	aldh9a1b (ENSAPOG00000016534)	uck2b (ENSAPOG00000016577)	czib (ENSAPOG00000016607)	scp2a (ENSAPOG00000016683)
Amphiprion	ANCESTRAL SPECIES	33	ENSGT00940000154967.a.b.a.b.y	ENSGT00940000177007	ENSGT00940000154967.a.b.a.b.z	ENSGT00940000155117.f.b	ENSGT00390000001114	ENSGT00390000006200	ENSGT00940000157937.a	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a.h #29	ENSGT00940000160185 #32	ENSGT00940000156301.a.b #33	ENSGT00940000156259.a.b	ENSGT00940000158629	ENSGT00390000015318.a	ENSGT00420000029753.b	ENSGT00390000016650.c.b	ENSGT00940000154277.a	ENSGT00390000018130.b	ENSGT00940000166372	ENSGT01020000230412.A.c.b.c.b	ENSGT00390000001523	ENSGT00940000154327.a
Clown anemonefish	MODERN SPECIES	566	ZBTB41 (ENSAOCG00000004148)	ENSAOCG00000004126	ENSAOCG00000004113	ENSAOCG00000004098	cdc73 (ENSAOCG00000004068)	ENSAOCG00000004041	ro60 (ENSAOCG00000000143)	RGS2 (ENSAOCG00000004033)	rgs13 (ENSAOCG00000024773)	RGS1 (ENSAOCG00000024770)	rgs18 (ENSAOCG00000024766)	ENSAOCG00000024762	ENSAOCG00000024755	DDR2 (ENSAOCG00000024751)	hsd17b7 (ENSAOCG00000024739)	ENSAOCG00000001792 #22	slc35d1b (ENSAOCG00000024732) #27	mier1b (ENSAOCG00000024723) #29	dynlt5 (ENSAOCG00000024720) #32	ENSAOCG00000024716	PIK3R3 (ENSAOCG00000024712)	IPP (ENSAOCG00000024709)	TMEM69 (ENSAOCG00000024704)	GPBP1L1 (ENSAOCG00000024702)	NASP (ENSAOCG00000024700)	prdx1 (ENSAOCG00000024698)	zte38 (ENSAOCG00000024695)	aldh9a1b (ENSAOCG00000024694)	uck2b (ENSAOCG00000002758)	czib (ENSAOCG00000024686)	scp2a (ENSAOCG00000024667)
Orange clownfish	MODERN SPECIES	1	ENSAPEG00000003433	ENSAPEG00000003411	ENSAPEG00000003400	cdc73 (ENSAPEG00000003342)	ro60 (ENSAPEG00000003310)	RGS2 (ENSAPEG00000003298)	rgs13 (ENSAPEG00000003271)	RGS1 (ENSAPEG00000003250)	rgs18 (ENSAPEG00000003237)	ENSAPEG00000003174	rgs5b (ENSAPEG00000003160)	ENSAPEG00000003084	ENSAPEG00000003047	ENSAPEG00000003009	hsd17b7 (ENSAPEG00000002974)	ENSAPEG00000002960 #22	slc35d1b (ENSAPEG00000002897) #27	mier1b (ENSAPEG00000002889) #29	dynlt5 (ENSAPEG00000002865) #32	SGIP1 (ENSAPEG00000002833) #33	PIK3R3 (ENSAPEG00000002826)	IPP (ENSAPEG00000002764)	TMEM69 (ENSAPEG00000002741)	GPBP1L1 (ENSAPEG00000002723)	NASP (ENSAPEG00000002685)	prdx1 (ENSAPEG00000002672)	zte38 (ENSAPEG00000002651)	aldh9a1b (ENSAPEG00000002627)	uck2b (ENSAPEG00000002611)	czib (ENSAPEG00000002395)	scp2a (ENSAPEG00000002318)
Cichlidae	ANCESTRAL SPECIES	2	ENSGT00550000075080	ENSGT00940000154967.a.b.a.b.ab	ENSGT00940000177007	ENSGT00940000154967.a.b.a.b.`b.a	ENSGT00390000001114	ENSGT00940000155117.f.b	ENSGT00390000006200	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000169307	ENSGT00940000160185 #32	ENSGT00940000156301.a.b #33	ENSGT00940000156259.a.b	ENSGT00940000158629	ENSGT00390000015318.a	ENSGT00420000029753.b	ENSGT00390000016650.c.b	ENSGT00940000154277.a	ENSGT00390000018130.b	ENSGT00940000166372	ENSGT01020000230412.A.c.b.c.b	ENSGT00390000001523
Pseudocrenilabrinae	ANCESTRAL SPECIES	7	ENSGT00940000177007.d.a	ENSGT00940000154967.a.b.a.b.ab.d	ENSGT00940000177007.c	ENSGT00940000154967.a.b.a.b.`b.a	ENSGT00390000001114	ENSGT00940000155117.f.b	ENSGT00390000006200	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000169307	ENSGT00940000160185 #32	ENSGT00940000156301.a.b #33	ENSGT00940000156259.a.b	ENSGT00940000158629	ENSGT00390000015318.a	ENSGT00420000029753.b	ENSGT00390000016650.c.b	ENSGT00940000154277.a	ENSGT00390000018130.b	ENSGT00940000166372	ENSGT01020000230412.A.c.b.c.b	ENSGT00390000001523
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	4	ENSGT00940000154967.a.b.a.b.ab.c	ENSGT00940000154967.a.b.a.b.ab.d	ENSGT00940000177007.c	ENSGT00940000154967.a.b.a.b.`b.a	ENSGT00390000001114	ENSGT00940000155117.f.b	ENSGT00390000006200	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000169307	ENSGT00940000160185 #32	ENSGT00940000156301.a.b #33	ENSGT00940000156259.a.b	ENSGT00940000158629	ENSGT00390000015318.a	ENSGT00420000029753.b	ENSGT00390000016650.c.b	ENSGT00940000154277.a	ENSGT00390000018130.b	ENSGT00940000166372	ENSGT01020000230412.A.c.b.c.b	ENSGT00390000001523
Haplochromini	ANCESTRAL SPECIES	2	ENSGT00940000155152.f.a	ENSGT00550000075080	ENSGT00940000154967.a.b.a.b.ab.c	ENSGT00940000177007.d.b	ENSGT00390000001114	ENSGT00940000155117.f.b	ENSGT00390000006200	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000169307	ENSGT00940000160185 #32	ENSGT00940000156301.a.b #33	ENSGT00940000156259.a.b	ENSGT00940000158629	ENSGT00390000015318.a	ENSGT00420000029753.b	ENSGT00390000016650.c.b	ENSGT00940000154277.a	ENSGT00390000018130.b	ENSGT00940000166372	ENSGT01020000230412.A.c.b.c.b	ENSGT00390000001523
Burton s mouthbrooder	MODERN SPECIES	459				ENSHBUG00000014147	ENSHBUG00000014153	cdc73 (ENSHBUG00000014189)	ro60 (ENSHBUG00000014208)	rgs13 (ENSHBUG00000014211)	RGS1 (ENSHBUG00000014222)	rgs18 (ENSHBUG00000014228)	ENSHBUG00000014234	rgs5b (ENSHBUG00000014240)	ENSHBUG00000014252	DDR2 (ENSHBUG00000014290)	hsd17b7 (ENSHBUG00000014299)	ENSHBUG00000014305 #22	SLC35D1 (ENSHBUG00000014320) #27	mier1b (ENSHBUG00000014369) #29	ENSHBUG00000014421	dynlt5 (ENSHBUG00000014435) #32	SGIP1 (ENSHBUG00000014449) #33	pik3r3a (ENSHBUG00000014461)	IPP (ENSHBUG00000014490)	TMEM69 (ENSHBUG00000014499)	GPBP1L1 (ENSHBUG00000014549)	NASP (ENSHBUG00000014581)	prdx1 (ENSHBUG00000014601)	zte38 (ENSHBUG00000014609)	aldh9a1b (ENSHBUG00000014631)	uck2b (ENSHBUG00000014681)	czib (ENSHBUG00000014724)
Haplochromini_A	ANCESTRAL SPECIES	3	ENSGT00940000155152.f.a	ENSGT00550000075080	ENSGT00940000154967.a.b.a.b.ab.c	ENSGT00940000177007.d.b	ENSGT00390000001114	ENSGT00940000155117.f.b	ENSGT00390000006200	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000169307	ENSGT00940000160185 #32	ENSGT00940000156301.a.b #33	ENSGT00940000156259.a.b	ENSGT00940000158629	ENSGT00390000015318.a	ENSGT00420000029753.b	ENSGT00390000016650.c.b	ENSGT00940000154277.a	ENSGT00390000018130.b	ENSGT00940000166372	ENSGT01020000230412.A.c.b.c.b	ENSGT00390000001523
P. nyererei	MODERN SPECIES	410				ENSPNYG00000020068	cdc73 (ENSPNYG00000020103)	ENSPNYG00000020143	ro60 (ENSPNYG00000020148)	rgs13 (ENSPNYG00000020160)	RGS1 (ENSPNYG00000020170)	rgs18 (ENSPNYG00000020189)	ENSPNYG00000020202	rgs5b (ENSPNYG00000020251)	ENSPNYG00000020305	DDR2 (ENSPNYG00000020342)	hsd17b7 (ENSPNYG00000020384)	ENSPNYG00000020395 #22	SLC35D1 (ENSPNYG00000020408) #27	mier1b (ENSPNYG00000020438) #29	ENSPNYG00000020467	dynlt5 (ENSPNYG00000020496) #32	ENSPNYG00000020513 #33	pik3r3a (ENSPNYG00000020525)	IPP (ENSPNYG00000020540)	TMEM69 (ENSPNYG00000020558)	GPBP1L1 (ENSPNYG00000020566)	NASP (ENSPNYG00000020594)	prdx1 (ENSPNYG00000020613)	zte38 (ENSPNYG00000020640)	aldh9a1b (ENSPNYG00000020744)	uck2b (ENSPNYG00000020774)	czib (ENSPNYG00000020788)
Haplochromini_B	ANCESTRAL SPECIES	12	ENSGT00940000154967.a.b.a.b.ab.c	ENSGT00940000154967.a.b.a.b.ab.d	ENSGT00940000177007.c	ENSGT00940000154967.a.b.a.b.`b.a	ENSGT00390000001114	ENSGT00940000155117.f.b	ENSGT00390000006200	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000169307	ENSGT00940000160185 #32	ENSGT00940000156301.a.b #33	ENSGT00940000156259.a.b	ENSGT00940000158629	ENSGT00390000015318.a	ENSGT00420000029753.b	ENSGT00390000016650.c.b	ENSGT00940000154277.a	ENSGT00390000018130.b	ENSGT00940000166372	ENSGT01020000230412.A.c.b.c.b	ENSGT00390000001523
Eastern happy	MODERN SPECIES	9	ENSACLG00000011899	ENSACLG00000011928	ENSACLG00000011972	cdc73 (ENSACLG00000012006)	ro60 (ENSACLG00000012217)	ENSACLG00000012249	ENSACLG00000012257	rgs13 (ENSACLG00000012269)	RGS1 (ENSACLG00000012276)	rgs18 (ENSACLG00000012289)	ENSACLG00000012302	rgs5b (ENSACLG00000012328)	ENSACLG00000012351	DDR2 (ENSACLG00000012375)	hsd17b7 (ENSACLG00000012518)	ENSACLG00000012541 #22	mier1b (ENSACLG00000012580) #29	dynlt5 (ENSACLG00000012613) #32	ENSACLG00000012623	SGIP1 (ENSACLG00000012629) #33	ENSACLG00000012657	pik3r3a (ENSACLG00000012661)	IPP (ENSACLG00000012674)	TMEM69 (ENSACLG00000012718)	GPBP1L1 (ENSACLG00000012722)	ENSACLG00000012752	prdx1 (ENSACLG00000012772)	zte38 (ENSACLG00000012778)	aldh9a1b (ENSACLG00000012789)	uck2b (ENSACLG00000012818)	czib (ENSACLG00000012842)
Zebra mbuna	MODERN SPECIES	1100	ENSMZEG00005009453	SHISAL2A (ENSMZEG00005009458)	ENSMZEG00005009470	ENSMZEG00005009475	ENSMZEG00005009486	ENSMZEG00005009500	rgs13 (ENSMZEG00005009553)	RGS1 (ENSMZEG00005009559)	rgs18 (ENSMZEG00005009566)	ENSMZEG00005009579	ENSMZEG00005009618	rgs5b (ENSMZEG00005009623)	ENSMZEG00005009628	DDR2 (ENSMZEG00005009647)	hsd17b7 (ENSMZEG00005009666)	ENSMZEG00005009679 #22	SLC35D1 (ENSMZEG00005009712) #27	mier1b (ENSMZEG00005009748) #29	ENSMZEG00005009789	dynlt5 (ENSMZEG00005009783) #32	SGIP1 (ENSMZEG00005009794) #33	pik3r3a (ENSMZEG00005009808)	IPP (ENSMZEG00005009820)	TMEM69 (ENSMZEG00005009831)	GPBP1L1 (ENSMZEG00005009840)	NASP (ENSMZEG00005009864)	prdx1 (ENSMZEG00005009876)	zte38 (ENSMZEG00005009881)	aldh9a1b (ENSMZEG00005009890)	uck2b (ENSMZEG00005009905)	czib (ENSMZEG00005009922)
Lyretail cichlid	MODERN SPECIES	300	ENSNBRG00000005161	ZBTB41 (ENSNBRG00000005175)	ENSNBRG00000005210	ENSNBRG00000005242	cdc73 (ENSNBRG00000005271)	ENSNBRG00000005300	ro60 (ENSNBRG00000005311)	rgs13 (ENSNBRG00000005316)	RGS1 (ENSNBRG00000005326)	rgs18 (ENSNBRG00000005354)	ENSNBRG00000005367	rgs5b (ENSNBRG00000005418)	ENSNBRG00000005436	DDR2 (ENSNBRG00000005467)	hsd17b7 (ENSNBRG00000005524)	ENSNBRG00000005533 #22	slc35d1b (ENSNBRG00000005566) #27	mier1b (ENSNBRG00000005696) #29	ENSNBRG00000005714	dynlt5 (ENSNBRG00000005749) #32	ENSNBRG00000005762 #33	pik3r3a (ENSNBRG00000005799)	IPP (ENSNBRG00000006046)	TMEM69 (ENSNBRG00000006076)	GPBP1L1 (ENSNBRG00000006091)	NASP (ENSNBRG00000006130)	prdx1 (ENSNBRG00000006166)	zte38 (ENSNBRG00000006190)	aldh9a1b (ENSNBRG00000006228)	ENSNBRG00000006275	uck2b (ENSNBRG00000006287)
Nile tilapia	MODERN SPECIES	9	ENSONIG00000037463	ENSONIG00000032827	ENSONIG00000042721	ENSONIG00000040102	ENSONIG00000021255	cdc73 (ENSONIG00000018579)	ro60 (ENSONIG00000034995)	rgs13 (ENSONIG00000018583)	RGS1 (ENSONIG00000018584)	rgs18 (ENSONIG00000041834)	ENSONIG00000018586	rgs5b (ENSONIG00000031653)	ENSONIG00000018589	ENSONIG00000018591	hsd17b7 (ENSONIG00000018594)	ENSONIG00000018597 #22	slc35d1b (ENSONIG00000018599) #27	mier1b (ENSONIG00000018601) #29	ENSONIG00000030889	dynlt5 (ENSONIG00000043209) #32	ENSONIG00000033447 #33	pik3r3a (ENSONIG00000018604)	IPP (ENSONIG00000018606)	TMEM69 (ENSONIG00000018607)	GPBP1L1 (ENSONIG00000018608)	NASP (ENSONIG00000018610)	prdx1 (ENSONIG00000018611)	zte38 (ENSONIG00000039918)	aldh9a1b (ENSONIG00000018612)	uck2b (ENSONIG00000018614)	czib (ENSONIG00000042425)
Midas cichlid	MODERN SPECIES	1311								rgs13 (ENSACIG00000018931)	RGS1 (ENSACIG00000018964)	rgs18 (ENSACIG00000018995)	ENSACIG00000019029	rgs5b (ENSACIG00000019045)	ENSACIG00000019057	DDR2 (ENSACIG00000019080)	hsd17b7 (ENSACIG00000019107)	ENSACIG00000019116 #22	slc35d1b (ENSACIG00000019133) #27	mier1b (ENSACIG00000019163) #29	ENSACIG00000019182	dynlt5 (ENSACIG00000019195) #32	ENSACIG00000019201 #33	PIK3R3 (ENSACIG00000019221)	IPP (ENSACIG00000019497)	TMEM69 (ENSACIG00000019520)	GPBP1L1 (ENSACIG00000019533)	NASP (ENSACIG00000019555)	prdx1 (ENSACIG00000019594)	zte38 (ENSACIG00000019672)	aldh9a1b (ENSACIG00000019688)	ENSACIG00000019717	uck2b (ENSACIG00000019724)
Pinecone sodierfish	MODERN SPECIES	8	ZBTB41 (ENSMMDG00005013456)	ENSMMDG00005013453	ENSMMDG00005013451	ENSMMDG00005013448	cdc73 (ENSMMDG00005013427)	ro60 (ENSMMDG00005013417)	RGS2 (ENSMMDG00005013414)	rgs13 (ENSMMDG00005013410)	RGS1 (ENSMMDG00005013407)	rgs18 (ENSMMDG00005013404)	ENSMMDG00005013273	rgs5b (ENSMMDG00005013269)	ENSMMDG00005013266	DDR2 (ENSMMDG00005013259)	hsd17b7 (ENSMMDG00005013247)	ENSMMDG00005013240 #22	slc35d1b (ENSMMDG00005013220) #27	mier1b (ENSMMDG00005013192) #29	ENSMMDG00005013186	dynlt5 (ENSMMDG00005013180) #32	ENSMMDG00005013176 #33	ENSMMDG00005012939	PIK3R3 (ENSMMDG00005012649)	IPP (ENSMMDG00005012638)	TMEM69 (ENSMMDG00005012635)	GPBP1L1 (ENSMMDG00005012619)	NASP (ENSMMDG00005012609)	prdx1 (ENSMMDG00005012600)	zte38 (ENSMMDG00005012598)	aldh9a1b (ENSMMDG00005012591)	uck2b (ENSMMDG00005012584)
Protacanthopterygii	ANCESTRAL SPECIES	38	ENSGT00940000158746.k.a	ENSGT00940000158746.l	ENSGT00940000158746.k.b	ENSGT00940000155117.f.b	ENSGT00390000001114	ENSGT00390000006200	ENSGT00940000157937.a	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a.d	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a #29	ENSGT00940000154396.b.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301.a.b #33	ENSGT00940000155190.bb.b #34	ENSGT00390000006503.a #36	ENSGT00940000162256	ENSGT00940000155542.b	ENSGT00940000156746.b	ENSGT00940000158468.a.a	ENSGT00940000154819.a.a.b	ENSGT00990000204738	ENSGT00620000088018.u	ENSGT00390000003015.d
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	610															ENSGT00390000013340.c.c	ENSGT00520000055591.a.b.e #22	ENSGT01030000234573.A.b.a.f #29	ENSGT00940000154396.b.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301.a.b.d #33	ENSGT00940000156301.a.a.d #33	ENSGT00940000155190.bb.b.d #34	ENSGT00390000006503.a.w #36	ENSGT00940000157092.v.b.a	ENSGT00940000162256	ENSGT00940000155542.b.j.b	ENSGT00940000156746.b.b	ENSGT00940000158468.a.a.e	ENSGT00940000154819.a.a.b.f
Salmoninae_a	ANCESTRAL SPECIES	6	ENSGT00940000154386.c	ENSGT00940000154967.a.b.a.b.a	ENSGT00940000158746.k.a	ENSGT00940000155117.f.b.f	ENSGT00390000001114.j	ENSGT00390000006200	ENSGT00940000157937.a	ENSGT00940000158520.e.a.a	ENSGT00940000157316.e.a.d	ENSGT00940000166298.d	ENSGT00940000165058.b.d	ENSGT00940000164081.a.f	ENSGT00940000157380.d	ENSGT00510000046975.a.c	ENSGT00390000013340.c.c	ENSGT00520000055591.a.b.e #22	ENSGT01030000234573.A.b.a.f #29	ENSGT00940000154396.b.b.b #31	ENSGT00940000160185 #32	ENSGT00940000156301.a.b.d #33	ENSGT00940000155190.bb.b.d #34	ENSGT00390000006503.a.w #36	ENSGT00940000157092.v.b.a	ENSGT00940000162256	ENSGT00940000155542.b.j.b	ENSGT00940000156746.b.b	ENSGT00940000158468.a.a.e	ENSGT00940000154819.a.a.b.f	ENSGT00990000204738	ENSGT00620000088018.u	ENSGT01000000216646.b
Oncorhynchus	ANCESTRAL SPECIES	15	ENSGT00550000075080	ENSGT00940000154967.a.b.a.b.a	ENSGT00940000158746.k.a	ENSGT00940000155117.f.b.f	ENSGT00390000001114.j	ENSGT00390000006200	ENSGT00940000157937.a	ENSGT00940000158520.e.a.a	ENSGT00940000157316.e.a.d	ENSGT00940000166298.d	ENSGT00940000165058.b.d	ENSGT00940000164081.a.f	ENSGT00940000157380.d	ENSGT00510000046975.a.c	ENSGT00390000013340.c.c	ENSGT00520000055591.a.b.e #22	ENSGT01030000234573.A.b.a.f #29	ENSGT01010000223280	ENSGT00940000160185 #32	ENSGT00940000156301.a.b.d #33	ENSGT00940000155190.bb.b.d #34	ENSGT00390000006503.a.w #36	ENSGT00940000157092.v.b.a	ENSGT01060000248993.a.b.a	ENSGT00940000162256	ENSGT00940000156746.b.b	ENSGT00940000158468.a.a.e	ENSGT00940000154819.a.a.b.f	ENSGT00990000204738	ENSGT00620000088018.u	ENSGT01000000216646.b
Rainbow trout	MODERN SPECIES	20	ENSOMYG00000025466	ENSOMYG00000025584	ENSOMYG00000025747	ENSOMYG00000075277	ENSOMYG00000025919	RO60 (ENSOMYG00000025939)	ENSOMYG00000025948	rgs1 (ENSOMYG00000025970)	rgs18 (ENSOMYG00000026001)	ENSOMYG00000026020	rgs5b (ENSOMYG00000060893)	ENSOMYG00000070755	ENSOMYG00000026046	ENSOMYG00000052218	ENSOMYG00000062529	ENSOMYG00000026076 #22	MIER1 (ENSOMYG00000026116) #29	ENSOMYG00000026188	dynlt5 (ENSOMYG00000026205) #32	SGIP1 (ENSOMYG00000026261) #33	ENSOMYG00000069573	ENSOMYG00000050830	PDE4B (ENSOMYG00000026316) #34	ENSOMYG00000058298	ENSOMYG00000052853	LEPROT (ENSOMYG00000026326) #36	ENSOMYG00000026690	ENSOMYG00000055416	ENSOMYG00000065215	ENSOMYG00000027962	ENSOMYG00000027982
Oncorhynchus_a	ANCESTRAL SPECIES	57	ENSGT00940000156309.A.k	ENSGT00940000155152.f.a.c	ENSGT00550000075080	ENSGT00940000155117.f.b.f	ENSGT00390000001114.j	ENSGT00390000006200	ENSGT00940000157937.a	ENSGT00940000158520.e.a.a	ENSGT00940000157316.e.a.d	ENSGT00940000166298.d	ENSGT00940000165058.b.d	ENSGT00940000164081.a.f	ENSGT00940000157380.d	ENSGT00510000046975.a.c	ENSGT00390000013340.c.c	ENSGT00520000055591.a.b.e #22	ENSGT01030000234573.A.b.a.f #29	ENSGT01010000223280	ENSGT00940000160185 #32	ENSGT00940000156301.a.b.d #33	ENSGT00940000155190.bb.b.d #34	ENSGT00390000006503.a.w #36	ENSGT00940000157092.v.b.a	ENSGT01060000248993.a.b.a	ENSGT00940000162256	ENSGT00940000156746.b.b	ENSGT00940000158468.a.a.e	ENSGT00940000154819.a.a.b.f	ENSGT00990000204738	ENSGT00620000088018.u	ENSGT01000000216646.b
Chinook salmon	MODERN SPECIES	20	ENSOTSG00005042540	ENSOTSG00005042541	ENSOTSG00005042547	cdc73 (ENSOTSG00005042557)	ENSOTSG00005042841	ro60 (ENSOTSG00005042842)	RGS2 (ENSOTSG00005042843)	rgs13 (ENSOTSG00005042844)	RGS1 (ENSOTSG00005042846)	rgs18 (ENSOTSG00005042848)	ENSOTSG00005042849	rgs5b (ENSOTSG00005042850)	ENSOTSG00005042852	ENSOTSG00005042853	ENSOTSG00005042854	ENSOTSG00005042856 #22	MIER1 (ENSOTSG00005042858) #29	ENSOTSG00005042859	dynlt5 (ENSOTSG00005042861) #32	ENSOTSG00005042862 #33	PDE4B (ENSOTSG00005042864) #34	LEPROT (ENSOTSG00005042871) #36	JAK1 (ENSOTSG00005042882)	ENSOTSG00005043219	ANGPTL3 (ENSOTSG00005043220)	ENSOTSG00005043221	LRP8 (ENSOTSG00005036099)	ENSOTSG00005036101	CFAP57 (ENSOTSG00005036103)	ENSOTSG00005036114	SHISAL2A (ENSOTSG00005036115)
Coho salmon	MODERN SPECIES	19	cpdp (ENSOKIG00005032306)	ENSOKIG00005032410	TSC22D2 (ENSOKIG00005032423)	cdc73 (ENSOKIG00005032455)	ENSOKIG00005032569	ro60 (ENSOKIG00005032575)	RGS2 (ENSOKIG00005032590)	rgs13 (ENSOKIG00005032608)	RGS1 (ENSOKIG00005032617)	rgs18 (ENSOKIG00005032635)	ENSOKIG00005032644	rgs5b (ENSOKIG00005032664)	ENSOKIG00005032687	ENSOKIG00005032712	ENSOKIG00005032741	ENSOKIG00005032782 #22	MIER1 (ENSOKIG00005032805) #29	dynlt5 (ENSOKIG00005032828) #32	ENSOKIG00005032833	ENSOKIG00005032839 #33	PDE4B (ENSOKIG00005032897) #34	ENSOKIG00005033268	LEPROT (ENSOKIG00005033284) #36	JAK1 (ENSOKIG00005033402)	ENSOKIG00005035001	ENSOKIG00005035028	ANGPTL3 (ENSOKIG00005035047)	ENSOKIG00005035056	ENSOKIG00005035064	LRP8 (ENSOKIG00005035149)	ENSOKIG00005035321
Salmo	ANCESTRAL SPECIES	5	ENSGT00940000154386.c	ENSGT00940000154967.a.b.a.b.a	ENSGT00940000158746.k.a	ENSGT00390000001114.j	ENSGT00940000155117.f.b.f	ENSGT00390000006200	ENSGT00940000157937.a	ENSGT00940000158520.e.a.a	ENSGT00940000157316.e.a.d	ENSGT00940000166298.d	ENSGT00940000165058.b.d	ENSGT00940000164081.a.f	ENSGT00940000157380.d	ENSGT00510000046975.a.c	ENSGT00390000013340.c.c	ENSGT00520000055591.a.b.e #22	ENSGT01030000234573.A.b.a.f #29	ENSGT00940000154396.b.b.b #31	ENSGT00940000160185 #32	ENSGT00940000157105.c	ENSGT00940000156301.a.a.d #33	ENSGT00940000155190.bb.b.d #34	ENSGT00390000006503.a.w #36	ENSGT00940000157092.v.b.a	ENSGT00940000162256	ENSGT00940000155542.b.j.b	ENSGT00940000156746.b.b	ENSGT00940000158468.a.a.e	ENSGT00940000154819.a.a.b.f	ENSGT00990000204738	ENSGT00620000088018.u
River trout	MODERN SPECIES	24	ENSSTUG00000038496	ZBTB41 (ENSSTUG00000038510)	ENSSTUG00000038538	ENSSTUG00000038602	cdc73 (ENSSTUG00000040157)	ENSSTUG00000040769	ro60 (ENSSTUG00000040774)	RGS2 (ENSSTUG00000040790)	rgs13 (ENSSTUG00000040807)	RGS1 (ENSSTUG00000040832)	rgs18 (ENSSTUG00000040873)	ENSSTUG00000040891	rgs5b (ENSSTUG00000040917)	RGS5 (ENSSTUG00000040945)	ENSSTUG00000040988	ENSSTUG00000040999 #22	mier1b (ENSSTUG00000041021) #29	insl5b (ENSSTUG00000041253) #31	dynlt5 (ENSSTUG00000041268) #32	ENSSTUG00000041291	PDE4B (ENSSTUG00000041543) #34	LEPROT (ENSSTUG00000043920) #36	JAK1 (ENSSTUG00000043980)	ENSSTUG00000045334	ENSSTUG00000045340	ANGPTL3 (ENSSTUG00000045350)	ENSSTUG00000003317	LRP8 (ENSSTUG00000005280)	ENSSTUG00000005416	CFAP57 (ENSSTUG00000005442)	ENSSTUG00000005550
Atlantic salmon	MODERN SPECIES	22	ENSSSAG00000082304	ENSSSAG00000050207	ENSSSAG00000099644	ENSSSAG00000115579	kcnt2 (ENSSSAG00000048768)	trove2 (ENSSSAG00000048653)	ENSSSAG00000086998	RGS2 (ENSSSAG00000048638)	ENSSSAG00000098668	ENSSSAG00000048591	rgs5b (ENSSSAG00000048583)	RGS5 (ENSSSAG00000048532)	rgs18 (ENSSSAG00000048618)	ENSSSAG00000048525	ENSSSAG00000048503	ENSSSAG00000048488 #22	ENSSSAG00000099417 #31	ENSSSAG00000048473 #29	SGIP1 (ENSSSAG00000048430) #33	PDE4B (ENSSSAG00000045031) #34	LEPROT (ENSSSAG00000083964) #36	ENSSSAG00000005686	ENSSSAG00000005273	ENSSSAG00000081771	ENSSSAG00000005265	ENSSSAG00000005245	ENSSSAG00000005192	ENSSSAG00000113012	ENSSSAG00000005180	ENSSSAG00000005062	ENSSSAG00000005028
Huchen	MODERN SPECIES	1998																ENSHHUG00000014504 #22	mier1b (ENSHHUG00000014473) #29	insl5b (ENSHHUG00000014470) #31	dynlt5 (ENSHHUG00000014465) #32	SGIP1 (ENSHHUG00000014461) #33	fbxl7 (ENSHHUG00000014417)	impa1 (ENSHHUG00000014396)
Salmoninae	ANCESTRAL SPECIES	153	ENSGT00940000160465.k.b.b	ENSGT00940000153664.B.q.b.b.b.b.b	ENSGT00940000155152.f.a.d	ENSGT00940000158746.k.b	ENSGT00940000155117.f.b.e	ENSGT00390000001114.i	ENSGT01000000220727	ENSGT00940000158520.e.a.b	ENSGT00940000157316.e.a.c	ENSGT00940000166298.c	ENSGT00940000165058.b.c	ENSGT00940000164081.a.e	ENSGT00510000046975.a.d	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c.d	ENSGT00520000055591.a.b.f #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a.e #29	ENSGT00940000156301.a.b.c #33	ENSGT00940000155190.bb.b.c #34	ENSGT00390000006503.a.x #36	ENSGT00940000157092.v.b.b	ENSGT00940000155542.b.j.a	ENSGT00940000156746.b.a	ENSGT00940000158468.a.a.f	ENSGT00940000154819.a.a.b.e
Salmoninae_a	ANCESTRAL SPECIES	2	ENSGT00940000160465.k.b.b	ENSGT00940000153664.B.q.b.b.b.b.b	ENSGT00940000155152.f.a.d	ENSGT00940000158746.k.b	ENSGT00940000155117.f.b.e	ENSGT00390000001114.i	ENSGT01000000220727	ENSGT00940000158520.e.a.b	ENSGT00940000157316.e.a.c	ENSGT00940000166298.c	ENSGT00940000165058.b.c	ENSGT00940000164081.a.e	ENSGT00510000046975.a.d	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c.d	ENSGT00520000055591.a.b.f #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a.e #29	ENSGT00940000156301.a.b.c #33	ENSGT00940000155190.bb.b.c #34	ENSGT00390000006503.a.x #36	ENSGT00940000157092.v.b.b	ENSGT00940000155542.b.j.a	ENSGT00940000156746.b.a	ENSGT00940000158468.a.a.f	ENSGT00940000154819.a.a.b.e	ENSGT00390000003015.d	ENSGT01000000216646.a	ENSGT00390000002757.e.b	ENSGT00940000160075.f	ENSGT00510000046981.a.a.e
Salmo	ANCESTRAL SPECIES	35	ENSGT00390000012807.`c	ENSGT00940000160465.k.b.b	ENSGT00940000153664.B.q.b.b.b.b.b	ENSGT00940000155152.f.a.d	ENSGT00940000158746.k.b	ENSGT00940000155117.f.b.e	ENSGT00390000001114.i	ENSGT00940000158520.e.a.b	ENSGT00940000157316.e.a.c	ENSGT00940000166298.c	ENSGT00940000165058.b.c	ENSGT00940000164081.a.e	ENSGT00510000046975.a.d	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c.d	ENSGT00520000055591.a.b.f #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a.e #29	ENSGT00940000156301.a.b.c #33	ENSGT00940000155190.bb.b.c #34	ENSGT00390000006503.a.x #36	ENSGT00940000157092.v.b.b	ENSGT00940000155542.b.j.a	ENSGT00940000156746.b.a	ENSGT00940000158468.a.a.f	ENSGT00940000154819.a.a.b.e	ENSGT00390000003015.d	ENSGT01100000263526.A.b.b.a.b.a.a.a.a.a.a.a.a.a.a.a.b.a.b.b	ENSGT01000000216646.a	ENSGT00390000002757.e.b	ENSGT00940000160075.f
River trout	MODERN SPECIES	13	ENSSTUG00000049090	ENSSTUG00000049083	pfn2a (ENSSTUG00000049077)	ENSSTUG00000049069	ENSSTUG00000048120	ENSSTUG00000048034	cdc73 (ENSSTUG00000047945)	rgs13 (ENSSTUG00000047929)	RGS1 (ENSSTUG00000047920)	rgs18 (ENSSTUG00000047909)	ENSSTUG00000047899	rgs5b (ENSSTUG00000047892)	ENSSTUG00000047887	DDR2 (ENSSTUG00000047802)	hsd17b7 (ENSSTUG00000047769)	SERBP1 (ENSSTUG00000047762) #22	slc35d1b (ENSSTUG00000047688) #27	mier1b (ENSSTUG00000047679) #29	ENSSTUG00000047671 #33	PDE4B (ENSSTUG00000047018) #34	LEPROT (ENSSTUG00000046965) #36	JAK1 (ENSSTUG00000046464)	PGM1 (ENSSTUG00000046364)	ANGPTL3 (ENSSTUG00000046339)	ENSSTUG00000046333	LRP8 (ENSSTUG00000046264)	tmem125b (ENSSTUG00000046251)	ENSSTUG00000046249	ENSSTUG00000046235	sec62 (ENSSTUG00000046197)	samd7 (ENSSTUG00000046185)
Atlantic salmon	MODERN SPECIES	5	ENSSSAG00000067554	PROF2 (ENSSSAG00000067552)	ENSSSAG00000067543	ENSSSAG00000094631	ENSSSAG00000066495	ENSSSAG00000111513	CDC73 (ENSSSAG00000066345)	rgs13 (ENSSSAG00000092028)	ENSSSAG00000066331	rgs18 (ENSSSAG00000066324)	ENSSSAG00000066311	rgs5b (ENSSSAG00000066307)	ENSSSAG00000088297	ENSSSAG00000066274	ENSSSAG00000066252	ENSSSAG00000066244 #22	ENSSSAG00000066189 #27	ENSSSAG00000066180 #29	ENSSSAG00000066145 #33	PDE4B (ENSSSAG00000065669) #34	ENSSSAG00000065060	ENSSSAG00000087564 #36	ENSSSAG00000064906	ENSSSAG00000064992	ENSSSAG00000064890	ENSSSAG00000062676	ENSSSAG00000109434	ENSSSAG00000062353	sec62 (ENSSSAG00000062132)	ENSSSAG00000120671	apoda.2 (ENSSSAG00000062033)
Oncorhynchus	ANCESTRAL SPECIES	11	ENSGT00940000160465.k.b.b	ENSGT00940000153664.B.q.b.b.b.b.b	ENSGT00940000155152.f.a.d	ENSGT00940000158746.k.b	ENSGT00940000155117.f.b.e	ENSGT00390000001114.i	ENSGT01000000220727	ENSGT00940000158520.e.a.b	ENSGT00940000157316.e.a.c	ENSGT00940000166298.c	ENSGT00940000165058.b.c	ENSGT00940000164081.a.e	ENSGT00510000046975.a.d	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c.d	ENSGT00520000055591.a.b.f #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a.e #29	ENSGT00940000156301.a.b.c #33	ENSGT00940000155190.bb.b.c #34	ENSGT00390000006503.a.x #36	ENSGT00940000157092.v.b.b	ENSGT00940000155542.b.j.a	ENSGT00940000156746.b.a	ENSGT00940000158468.a.a.f	ENSGT00940000154819.a.a.b.e	ENSGT00390000003015.d	ENSGT01000000216646.a	ENSGT00390000002757.e.b	ENSGT00940000160075.f	ENSGT00510000046981.a.a.e
Oncorhynchus_a	ANCESTRAL SPECIES	37	ENSGT00940000160465.k.b.b	ENSGT00940000153664.B.q.b.b.b.b.b	ENSGT00940000155152.f.a.d	ENSGT00940000158746.k.b	ENSGT00940000155117.f.b.e	ENSGT00390000001114.i	ENSGT01000000220727	ENSGT00940000158520.e.a.b	ENSGT00940000157316.e.a.c	ENSGT00940000166298.c	ENSGT00940000165058.b.c	ENSGT00940000164081.a.e	ENSGT00510000046975.a.d	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c.d	ENSGT00520000055591.a.b.f #22	ENSGT00940000155665.b #27	ENSGT01030000234573.A.b.a.e #29	ENSGT00940000156301.a.b.c #33	ENSGT00940000155190.bb.b.c #34	ENSGT00390000006503.a.x #36	ENSGT00940000157092.v.b.b	ENSGT00940000155542.b.j.a	ENSGT00940000156746.b.a	ENSGT00940000158468.a.a.f	ENSGT00940000154819.a.a.b.e	ENSGT00390000003015.d	ENSGT01000000216646.a	ENSGT00390000002757.e.b	ENSGT00940000160075.f	ENSGT00510000046981.a.a.e
Coho salmon	MODERN SPECIES	23	pfn2a (ENSOKIG00005023561)	ENSOKIG00005023542	ENSOKIG00005022129	ENSOKIG00005022028	ENSOKIG00005022020	CDC73 (ENSOKIG00005021939)	ENSOKIG00005021898	rgs13 (ENSOKIG00005021887)	RGS1 (ENSOKIG00005021878)	rgs18 (ENSOKIG00005021870)	ENSOKIG00005021861	rgs5b (ENSOKIG00005021844)	ENSOKIG00005021822	DDR2 (ENSOKIG00005021534)	HSD17B7 (ENSOKIG00005021511)	ENSOKIG00005021473 #22	slc35d1b (ENSOKIG00005021274) #27	mier1b (ENSOKIG00005021239) #29	SGIP1 (ENSOKIG00005021143) #33	PDE4B (ENSOKIG00005018326) #34	LEPROT (ENSOKIG00005018191) #36	JAK1 (ENSOKIG00005015807)	PGM1 (ENSOKIG00005015482)	ANGPTL3 (ENSOKIG00005015451)	ENSOKIG00005015440	ENSOKIG00005015384	tmem125b (ENSOKIG00005015358)	ENSOKIG00005015338	sec62 (ENSOKIG00005015325)	samd7 (ENSOKIG00005015311)	apoda.2 (ENSOKIG00005015135)
Chinook salmon	MODERN SPECIES	1	ENSOTSG00005004174	pfn2a (ENSOTSG00005004182)	ENSOTSG00005004186	ENSOTSG00005004218	cdc73 (ENSOTSG00005004426)	ENSOTSG00005004438	ENSOTSG00005004439	rgs13 (ENSOTSG00005004440)	ENSOTSG00005004441	rgs18 (ENSOTSG00005004443)	ENSOTSG00005004444	rgs5b (ENSOTSG00005004445)	ENSOTSG00005004446	DDR2 (ENSOTSG00005004456)	hsd17b7 (ENSOTSG00005004487)	ENSOTSG00005004492 #22	slc35d1b (ENSOTSG00005004494) #27	mier1b (ENSOTSG00005004508) #29	ENSOTSG00005004509 #33	PDE4B (ENSOTSG00005004523) #34	LEPROT (ENSOTSG00005004630) #36	JAK1 (ENSOTSG00005004676)	PGM1 (ENSOTSG00005008505)	ANGPTL3 (ENSOTSG00005008516)	ENSOTSG00005008518	ENSOTSG00005008517	LRP8 (ENSOTSG00005008520)	ENSOTSG00005008521	tmem125b (ENSOTSG00005008522)	ENSOTSG00005008525	sec62 (ENSOTSG00005008527)
Rainbow trout	MODERN SPECIES	29	ENSOMYG00000046550	ENSOMYG00000060001	ENSOMYG00000046544	ENSOMYG00000045944	ENSOMYG00000054553	ENSOMYG00000045802	ENSOMYG00000045790	rgs13 (ENSOMYG00000045775)	ENSOMYG00000045770	rgs18 (ENSOMYG00000045754)	ENSOMYG00000045744	rgs5b (ENSOMYG00000045740)	ENSOMYG00000045738	ENSOMYG00000045714	ENSOMYG00000045699	ENSOMYG00000045694 #22	ENSOMYG00000045663 #27	ENSOMYG00000077151	ENSOMYG00000045641 #29	SGIP1 (ENSOMYG00000045605) #33	PDE4B (ENSOMYG00000044952) #34	ENSOMYG00000018066	LEPROT (ENSOMYG00000044876) #36	ENSOMYG00000043543	ENSOMYG00000064035	ENSOMYG00000043228	ENSOMYG00000043210	ENSOMYG00000043205	ENSOMYG00000043125	ENSOMYG00000043098	ENSOMYG00000043091
Huchen	MODERN SPECIES	601													ENSHHUG00000002966	DDR2 (ENSHHUG00000002929)	hsd17b7 (ENSHHUG00000002837)	SERBP1 (ENSHHUG00000002810) #22	slc35d1b (ENSHHUG00000002760) #27	mier1b (ENSHHUG00000002749) #29	ENSHHUG00000002731	SGIP1 (ENSHHUG00000002723) #33	PDE4B (ENSHHUG00000002478) #34	LEPROT (ENSHHUG00000002451) #36	JAK1 (ENSHHUG00000002291)	PGM1 (ENSHHUG00000002210)	ANGPTL3 (ENSHHUG00000002203)	ENSHHUG00000002181	LRP8 (ENSHHUG00000002082)
Spotted gar	MODERN SPECIES	648	rgs13 (ENSLOCG00000007328)	RGS1 (ENSLOCG00000007316)	rgs18 (ENSLOCG00000007296)	brinp3a.2 (ENSLOCG00000007286)	brinp3a.1 (ENSLOCG00000007272)	ENSLOCG00000007261	rgs5b (ENSLOCG00000007246)	rgs5a (ENSLOCG00000007218)	rgs4 (ENSLOCG00000007206)	H4C7 (ENSLOCG00000017741)	ENSLOCG00000007192	uhmk1 (ENSLOCG00000007180)	uap1 (ENSLOCG00000007170)	DDR2 (ENSLOCG00000007142)	hsd17b7 (ENSLOCG00000007122)	serbp1a (ENSLOCG00000007107) #22	ENSLOCG00000007083 #23	ENSLOCG00000007069 #23	slc35d1b (ENSLOCG00000007054) #27	mier1a (ENSLOCG00000007038) #29	dnai4 (ENSLOCG00000007005) #30	insl5a (ENSLOCG00000006990) #31	dynlt5 (ENSLOCG00000006973) #32	SGIP1 (ENSLOCG00000006955) #33	PDE4B (ENSLOCG00000006922) #34	lepr (ENSLOCG00000006903) #35	LEPROT (ENSLOCG00000006886) #36	DNAJC6 (ENSLOCG00000006853) #37	ak4 (ENSLOCG00000006837)	jak1 (ENSLOCG00000006806)	RAVER2 (ENSLOCG00000006773)
Reedfish	MODERN SPECIES	1	brinp3a.1 (ENSECRG00000011623)	ENSECRG00000011611	ENSECRG00000011588	rgs8 (ENSECRG00000011563)	rgs16 (ENSECRG00000011546)	rgs5a (ENSECRG00000011534)	rgs4 (ENSECRG00000011519)	rpl27 (ENSECRG00000011509)	ENSECRG00000011494	ENSECRG00000011482	ENSECRG00000011471	uhmk1 (ENSECRG00000011461)	uap1 (ENSECRG00000011438)	ENSECRG00000011414	hsd17b7 (ENSECRG00000011393)	serbp1a (ENSECRG00000011358) #22	IL12RB2 (ENSECRG00000011310) #23	slc35d1b (ENSECRG00000009488) #27	mier1b (ENSECRG00000009470) #29	dnai4 (ENSECRG00000009439) #30	insl5a (ENSECRG00000009426) #31	dynlt5 (ENSECRG00000009416) #32	SGIP1 (ENSECRG00000009386) #33	PDE4B (ENSECRG00000009352) #34	lepr (ENSECRG00000009304) #35	LEPROT (ENSECRG00000009275) #36	DNAJC6 (ENSECRG00000009249) #37	ak4 (ENSECRG00000009230)	jak1 (ENSECRG00000009148)	RAVER2 (ENSECRG00000009085)	CACHD1 (ENSECRG00000009038)
Elephant shark	MODERN SPECIES	1737	cth (ENSCMIG00000001111) #10	ankrd13c (ENSCMIG00000001034) #11	srsf11 (ENSCMIG00000001022) #13	ENSCMIG00000001018 #13	lrrc40 (ENSCMIG00000000986) #14	ENSCMIG00000000964	ENSCMIG00000000958 #15	ENSCMIG00000000950 #17	rpe65b (ENSCMIG00000000886) #18	ENSCMIG00000000863	si:ch211-198n5.11 (ENSCMIG00000000852)	wls (ENSCMIG00000000828) #19	ENSCMIG00000000815	GNG12 (ENSCMIG00000000805)	gadd45aa (ENSCMIG00000000801) #21	serbp1 (ENSCMIG00000000793) #22	ENSCMIG00000000783 #23
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00520000055591.a #22
Lamprey	MODERN SPECIES	3962																serbp1a (ENSPMAG00000009077) #22
Hagfish	MODERN SPECIES	1267					ENSEBUG00000007787 #11	uhrf1 (ENSEBUG00000004071)	ENSEBUG00000002164	ENSEBUG00000000521	ENSEBUG00000004842	ENSEBUG00000013515	ENSEBUG00000000742	foxd3 (ENSEBUG00000001866)	ENSEBUG00000000715 #27	slc35d1a (ENSEBUG00000003472) #27	ZNF367 (ENSEBUG00000002758)	serbp1a (ENSEBUG00000012593) #22	ENSEBUG00000014764	ENSEBUG00000001055	ENSEBUG00000016980	ENSEBUG00000005829	ENSEBUG00000001219	ENSEBUG00000012041	ENSEBUG00000001596	ENSEBUG00000014261	ENSEBUG00000000903	ENSEBUG00000016937	ENSEBUG00000006004	dph5 (ENSEBUG00000016876)	ENSEBUG00000015689	ENSEBUG00000011085	ENSEBUG00000002355
Vertebrata	ANCESTRAL SPECIES																	ENSGT00520000055591.b ##22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00520000055591.b ##22
Euteleostomi	ANCESTRAL SPECIES	1		ENSGT01050000244887.A.a.b	ENSGT00940000164809	ENSGT00390000010568	ENSGT00940000159571	ENSGT00940000158820	ENSGT00940000156511	ENSGT00390000009609	ENSGT00940000155899	ENSGT00530000063404.b	ENSGT00940000156750	ENSGT00940000158998	ENSGT00390000003182	ENSGT00390000006932	ENSGT00940000157395	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000166301	ENSGT00940000154960	ENSGT00940000156081	ENSGT00940000168229	ENSGT00950000182925.D	ENSGT00940000161260	ENSGT01050000244887.A.b.b	ENSGT00950000182870.a.a.a.b	ENSGT00950000182971.C	ENSGT00490000043356.b	ENSGT00940000159594	ENSGT00950000182964.a.b.a ##21	ENSGT00940000158196
Actinopterygii	ANCESTRAL SPECIES	11	ENSGT00940000156639	ENSGT00940000157654	ENSGT00390000005250	ENSGT00940000158126	ENSGT00940000157140.a	ENSGT00640000091523	ENSGT00940000164995	ENSGT00940000155876	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000163752	ENSGT00940000160266	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000156973	ENSGT00940000157299	ENSGT00940000157592	ENSGT00530000064469	ENSGT00390000005782	ENSGT00390000009048.a.b	ENSGT00940000156369	ENSGT01080000257410.D	ENSGT01030000234535.F.b	ENSGT00730000111385	ENSGT00940000156579	ENSGT00940000157873	ENSGT00390000018878
Neopterygii	ANCESTRAL SPECIES	16	ENSGT00940000157654	ENSGT00390000005250	ENSGT00940000158126	ENSGT00940000157140.a	ENSGT00640000091523	ENSGT00940000164995	ENSGT00940000155876	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000163752	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000156973	ENSGT00940000157299	ENSGT00940000157592	ENSGT00530000064469	ENSGT00390000005782	ENSGT00390000009048.a.b	ENSGT00940000156369	ENSGT01080000257410.D	ENSGT01030000234535.F.b	ENSGT00730000111385	ENSGT00940000156579	ENSGT00940000157873	ENSGT00390000018878
Osteoglossocephalai	ANCESTRAL SPECIES	33														ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000156973	ENSGT00940000157299.c	ENSGT00950000182964.a.b.a.a.a ##21	ENSGT00950000182964.a.b.a.a.b ##21	ENSGT00940000160343	ENSGT00940000165543	ENSGT00940000154668	ENSGT00510000049326.b.b	ENSGT00940000165107.B	ENSGT00390000014416	ENSGT00390000011383	ENSGT00390000009130.b.d.a	ENSGT00940000158747
Clupeocephala	ANCESTRAL SPECIES	78	ENSGT00940000156997.a	ENSGT00390000018830.a.a	ENSGT00940000165146	ENSGT01050000244902.a.a.a.a.a.b	ENSGT00390000007246	ENSGT00940000155498	ENSGT00390000004511.c.b	ENSGT00940000155135	ENSGT00940000156114.d	ENSGT00940000154078.b.b	ENSGT00510000049555	ENSGT00390000004511.c.a	ENSGT01010000222762.a	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000156973	ENSGT00940000157299.c	ENSGT00950000182964.a.b.a.a.a ##21	ENSGT00940000160343	ENSGT00940000165543	ENSGT00940000154668	ENSGT00510000049326.b.b	ENSGT00940000165107.B	ENSGT00390000014416	ENSGT00390000011383	ENSGT00390000009130.b.d.a	ENSGT00940000158747	ENSGT00940000156804.a
Otomorpha	ANCESTRAL SPECIES	60																ENSGT00520000055591.b ##22	ENSGT00940000157299.d	ENSGT00950000182964.a.b.a.a.b.e ##21	ENSGT00950000182964.a.b.a.a.b.f ##21	ENSGT00940000166638	ENSGT00390000010075	ENSGT00940000165107.A	ENSGT00390000009130.b.d.b	ENSGT00940000156804.b	ENSGT00940000156814	ENSGT00940000153725.b.c	ENSGT00950000182909.a.e	ENSGT00940000154484.B.a.a	ENSGT00940000163919.b	ENSGT00940000159932.b	ENSGT00940000155760.t.b
Otophysi	ANCESTRAL SPECIES	37	ENSGT00940000158907.c	ENSGT00390000004624.a.a	ENSGT00940000166240	ENSGT00940000158928	ENSGT00530000063205.B	ENSGT00940000159475.c	ENSGT00940000156161.B	ENSGT00940000159066	ENSGT00940000155983.a.b	ENSGT00390000009453.gb	ENSGT01100000263544.c.a.a.b	ENSGT00510000047107.B	ENSGT00940000156471.a	ENSGT00390000005102.id.b	ENSGT00670000098179.d.a	ENSGT00520000055591.b ##22	ENSGT00940000157299.d	ENSGT00950000182964.a.b.a.a.b.e ##21	ENSGT00950000182964.a.b.a.a.b.f ##21	ENSGT00940000166638	ENSGT00390000010075	ENSGT00940000165107.A	ENSGT00390000009130.b.d.b	ENSGT00940000156804.b	ENSGT00940000156814	ENSGT00940000153725.b.c	ENSGT00950000182909.a.e	ENSGT00940000154484.B.a.a	ENSGT00940000163919.b	ENSGT00940000159932.b	ENSGT00940000155760.t.b
Characiphysae	ANCESTRAL SPECIES	23	ENSGT00390000004624.a.a	ENSGT00940000166240	ENSGT00530000063460.A.b	ENSGT00940000158928.k	ENSGT00530000063205.B	ENSGT00940000159475.c	ENSGT00940000156161.B	ENSGT00940000159066	ENSGT00940000155983.a.b	ENSGT00390000009453.gb	ENSGT01100000263544.c.a.a.b	ENSGT00510000047107.B	ENSGT00940000156471.a	ENSGT00390000005102.id.b	ENSGT00670000098179.d.a	ENSGT00520000055591.b ##22	ENSGT00940000157299.d	ENSGT00950000182964.a.b.a.a.b.e ##21	ENSGT00950000182964.a.b.a.a.b.f ##21	ENSGT00940000166638	ENSGT00390000010075	ENSGT00940000165107.A	ENSGT00390000009130.b.d.b	ENSGT00940000156804.b	ENSGT00940000156814	ENSGT00940000153725.b.c	ENSGT00950000182909.a.e	ENSGT00940000154484.B.a.a	ENSGT00940000163919.b	ENSGT00940000159932.b	ENSGT00940000155760.t.b
Characiphysae_b	ANCESTRAL SPECIES	21	ENSGT00390000004624.a.a	ENSGT00940000166240	ENSGT00530000063460.A.b	ENSGT00940000158928.k	ENSGT00530000063205.B	ENSGT00940000159475.c	ENSGT00940000156161.B	ENSGT00940000159066	ENSGT00940000155983.a.b	ENSGT00390000009453.gb	ENSGT01100000263544.c.a.a.b	ENSGT00510000047107.B	ENSGT00940000156471.a	ENSGT00390000005102.id.b	ENSGT00670000098179.d.a	ENSGT00520000055591.b ##22	ENSGT00940000157299.d	ENSGT00950000182964.a.b.a.a.b.e ##21	ENSGT00950000182964.a.b.a.a.b.f ##21	ENSGT00940000166638	ENSGT00390000010075	ENSGT00940000165107.A	ENSGT00390000009130.b.d.b	ENSGT00940000156804.b	ENSGT00940000156814	ENSGT00940000153725.b.c	ENSGT00950000182909.a.e	ENSGT00940000154484.B.a.a	ENSGT00940000163919.b	ENSGT00940000159932.b	ENSGT00940000155760.t.b
Characoidei	ANCESTRAL SPECIES	31	ENSGT00390000004624.a.a	ENSGT00940000166240	ENSGT00530000063460.A.b	ENSGT00940000158928.k	ENSGT00530000063205.B	ENSGT00940000159475.c	ENSGT00940000156161.B	ENSGT00940000159066	ENSGT00940000155983.a.b	ENSGT00390000009453.gb	ENSGT01100000263544.c.a.a.b	ENSGT00510000047107.B	ENSGT00940000156471.a	ENSGT00390000005102.id.b	ENSGT00670000098179.d.a	ENSGT00520000055591.b ##22	ENSGT00940000157299.d	ENSGT00950000182964.a.b.a.a.b.f ##21	ENSGT00940000166638	ENSGT00390000010075	ENSGT00940000165107.A	ENSGT00390000009130.b.d.b	ENSGT00940000156804.b	ENSGT00940000156814	ENSGT00940000153725.b.c	ENSGT00950000182909.a.e	ENSGT00940000154484.B.a.a	ENSGT00940000163919.b	ENSGT00940000159932.b	ENSGT00940000155760.t.b	ENSGT00730000111146
Red-bellied piranha	MODERN SPECIES	7	ENSPNAG00000009880	ENSPNAG00000009913	MFHAS1 (ENSPNAG00000005011)	eri1 (ENSPNAG00000009938)	ppp1r3b (ENSPNAG00000009952)	ENSPNAG00000009965	ENSPNAG00000010036	dusp4 (ENSPNAG00000010055)	ENSPNAG00000001365	zgc:86764 (ENSPNAG00000010125)	slc26a1 (ENSPNAG00000010144)	rbp4l (ENSPNAG00000010156)	PDE6B (ENSPNAG00000010235)	atp5mea (ENSPNAG00000010247)	hspb9l (ENSPNAG00000010263)	zgc:103482 (ENSPNAG00000010281) ##22	ENSPNAG00000010340	st8sia3 (ENSPNAG00000005359)	ONECUT2 (ENSPNAG00000010362)	fech (ENSPNAG00000010385)	bxdc2 (ENSPNAG00000010431)	NUP54 (ENSPNAG00000010458)	PPEF2 (ENSPNAG00000010576)	ncapg (ENSPNAG00000010612)
Electric eel	MODERN SPECIES	184																zgc:103482 (ENSEEEG00000006864) ##22	EFNA5 (ENSEEEG00000006867)	GADD45G (ENSEEEG00000006872) ##21	gadd45gb.1 (ENSEEEG00000006878) ##21	ghrb (ENSEEEG00000006880)	oxct1b (ENSEEEG00000006883)	c7b (ENSEEEG00000006891)	CACNA2D3 (ENSEEEG00000006935)	LRTM1 (ENSEEEG00000006944)	ENSEEEG00000006947	wnt5a (ENSEEEG00000006951)	ERC2 (ENSEEEG00000006964)	ENSEEEG00000007137	ENSEEEG00000007196	ENSEEEG00000007198	RAD54L2 (ENSEEEG00000007201)
Channel catfish	MODERN SPECIES	9	nnt (ENSIPUG00000004138)	ENSIPUG00000004189	fyb (ENSIPUG00000004212)	mfhas1 (ENSIPUG00000004290)	eri1 (ENSIPUG00000004305)	ppp1r3b (ENSIPUG00000004331)	ENSIPUG00000004366	dusp4 (ENSIPUG00000004498)	ENSIPUG00000004518	zgc:86764 (ENSIPUG00000004566)	ENSIPUG00000004586	slc26a1 (ENSIPUG00000004595)	rbp4l (ENSIPUG00000004609)	PDE6B (ENSIPUG00000004687)	hspb9l (ENSIPUG00000004733)	zgc:103482 (ENSIPUG00000004762) ##22	EFNA5 (ENSIPUG00000004774)	GADD45G (ENSIPUG00000004787) ##21	gadd45gb.1 (ENSIPUG00000004791) ##21	ENSIPUG00000004805	ENSIPUG00000004813	ghrb (ENSIPUG00000004825)	c7 (ENSIPUG00000004890)	c6 (ENSIPUG00000004907)	rgs7bpb (ENSIPUG00000004920)	rnf180 (ENSIPUG00000004929)	htr1ab (ENSIPUG00000004938)	ndr1 (ENSIPUG00000004944)	eif4ebp1 (ENSIPUG00000004953)	ENSIPUG00000004961	ANK1 (ENSIPUG00000004975)
Cyprinoidei	ANCESTRAL SPECIES	54	ENSGT00390000004624.a.a	ENSGT00940000166240	ENSGT00940000158928	ENSGT00530000063205.B	ENSGT00940000159475.c	ENSGT00940000156161.B	ENSGT00940000159066	ENSGT00940000155983.a.b	ENSGT00390000009453.gb	ENSGT01100000263544.c.a.a.b	ENSGT00510000047107.B	ENSGT00940000156471.a	ENSGT00390000005102.id.b	ENSGT00670000098179.d.a	ENSGT01030000234576.D.a.b.b	ENSGT00520000055591.b ##22	ENSGT00940000157299.d	ENSGT00950000182964.a.b.a.a.b.e ##21	ENSGT00950000182964.a.b.a.a.b.f ##21	ENSGT00940000166638	ENSGT00390000010075	ENSGT00940000165107.A	ENSGT00390000009130.b.d.b	ENSGT00940000156804.b	ENSGT00940000156814	ENSGT00940000153725.b.c	ENSGT00950000182909.a.e	ENSGT00940000154484.B.a.a	ENSGT00940000163919.b	ENSGT00940000159932.b	ENSGT00940000155760.t.b.c
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	144	ENSGT00390000004624.a.a.c	ENSGT00940000173711	ENSGT00530000063460.A.b.f.a.b	ENSGT00940000158928.i	ENSGT00530000063205.B.p	ENSGT00940000159475.c.a	ENSGT00940000156161.B.p.a	ENSGT00940000159066.c	ENSGT00940000155983.a.b.b	ENSGT00390000009453.gb.b	ENSGT01100000263544.c.a.a.b.e	ENSGT00940000156471.a.a	ENSGT00390000005102.id.b.b	ENSGT00670000098179.d.a	ENSGT01030000234576.D.a.b.b	ENSGT00520000055591.b.a ##22	ENSGT00940000157299.d.b	ENSGT00950000182964.a.b.a.a.b.e.e ##21	ENSGT00950000182964.a.b.a.a.b.f.j ##21	ENSGT00940000166638.d	ENSGT00940000165107.A.c	ENSGT00390000009130.b.d.b.b	ENSGT00940000156804.b.a	ENSGT00940000156814.b	ENSGT00940000153725.b.c.a	ENSGT00950000182909.a.e.b	ENSGT00940000154484.B.a.a.s.a	ENSGT00940000163919.b.a	ENSGT00940000159932.b.a	ENSGT00940000155760.t.b.c.a	ENSGT00730000111146.c
Goldfish	MODERN SPECIES	40	fgf10a (ENSCARG00000026221)	nnt (ENSCARG00000026304)	ENSCARG00000029809	MFHAS1 (ENSCARG00000029835)	eri1 (ENSCARG00000029849)	ppp1r3b (ENSCARG00000029864)	ENSCARG00000029889	dusp4 (ENSCARG00000030254)	ENSCARG00000030263	zgc:86764 (ENSCARG00000030273)	slc26a1 (ENSCARG00000030310)	PDE6B (ENSCARG00000030340)	atp5mea (ENSCARG00000031186)	hspb9l (ENSCARG00000031193)	ENSCARG00000031200	zgc:103482 (ENSCARG00000031213) ##22	EFNA5 (ENSCARG00000031219)	GADD45G (ENSCARG00000031229) ##21	gadd45gb.1 (ENSCARG00000031239) ##21	ENSCARG00000031251	ghrb (ENSCARG00000031258)	oxct1b (ENSCARG00000031279)	c7b (ENSCARG00000031471)	rgs7bpb (ENSCARG00000033209)	rnf180b (ENSCARG00000033243)	htr1ab (ENSCARG00000033290)	ndr1 (ENSCARG00000033304)	eif4ebp1 (ENSCARG00000033335)	ANK1 (ENSCARG00000033533)	ftsj1 (ENSCARG00000035891)	ENSCARG00000036055
Cyprininae_a	ANCESTRAL SPECIES	89	ENSGT00390000004624.a.a.c	ENSGT00940000173711	ENSGT00530000063460.A.b.f.a.b	ENSGT00940000158928.i	ENSGT00530000063205.B.p	ENSGT00940000159475.c.a	ENSGT00940000156161.B.p.a	ENSGT00940000159066.c	ENSGT00940000155983.a.b.b	ENSGT00390000009453.gb.b	ENSGT01100000263544.c.a.a.b.e	ENSGT00940000156471.a.a	ENSGT00390000005102.id.b.b	ENSGT00670000098179.d.a	ENSGT01030000234576.D.a.b.b	ENSGT00520000055591.b.a ##22	ENSGT00940000157299.d.b	ENSGT00950000182964.a.b.a.a.b.e.e ##21	ENSGT00950000182964.a.b.a.a.b.f.j ##21	ENSGT00940000166638.d	ENSGT00940000165107.A.c	ENSGT00390000009130.b.d.b.b	ENSGT00940000156804.b.a	ENSGT00940000156814.b	ENSGT00940000153725.b.c.a	ENSGT00950000182909.a.e.b	ENSGT00940000154484.B.a.a.s.a	ENSGT00940000163919.b.a	ENSGT00940000159932.b.a	ENSGT00940000155760.t.b.c.a	ENSGT00730000111146.c
Common carp reference	MODERN SPECIES	38	ENSCCRG00000019866	ENSCCRG00000070694	eri1 (ENSCCRG00000019826)	ppp1r3b (ENSCCRG00000056231)	ENSCCRG00000059873	ENSCCRG00000076650	ENSCCRG00000058844	dusp4 (ENSCCRG00000066705)	ENSCCRG00000016791	zgc:86764 (ENSCCRG00000075050)	slc26a1 (ENSCCRG00000057726)	ENSCCRG00000015718	atp5mea (ENSCCRG00000015714)	hspb9l (ENSCCRG00000015713)	ENSCCRG00000070425	zgc:103482 (ENSCCRG00000015705) ##22	ENSCCRG00000081312	ENSCCRG00000005239 ##21	gadd45gb.1 (ENSCCRG00000070275) ##21	ENSCCRG00000005229	ghrb (ENSCCRG00000005217)	oxct1b (ENSCCRG00000052819)	c7b (ENSCCRG00000004390)	rgs7bpb (ENSCCRG00000004319)	rnf180b (ENSCCRG00000011085)	ndr1 (ENSCCRG00000004305)	ENSCCRG00000037719	ftsj1 (ENSCCRG00000037770)	ENSCCRG00000039416	lifrb (ENSCCRG00000039393)	ccdc61 (ENSCCRG00000039477)
Golden-line barbel	MODERN SPECIES	113	ENSSGRG00000046185	MFHAS1 (ENSSGRG00000046187)	ENSSGRG00000046188	eri1 (ENSSGRG00000046189)	ppp1r3b (ENSSGRG00000046190)	ENSSGRG00000046201	dusp4 (ENSSGRG00000046227)	ENSSGRG00000046228	ENSSGRG00000046229	slc26a1 (ENSSGRG00000046230)	rbp4l (ENSSGRG00000046231)	PDE6B (ENSSGRG00000046253)	atp5mea (ENSSGRG00000046795)	hspb9l (ENSSGRG00000046797)	ENSSGRG00000046798	zgc:103482 (ENSSGRG00000046799) ##22	EFNA5 (ENSSGRG00000046800)	GADD45G (ENSSGRG00000046805) ##21	gadd45gb.1 (ENSSGRG00000046820) ##21	ENSSGRG00000046824	ENSSGRG00000046840	ghrb (ENSSGRG00000046841)	c7b (ENSSGRG00000046880)	C6 (ENSSGRG00000047055)	rnf180b (ENSSGRG00000047176)	htr1ab (ENSSGRG00000047178)	ndr1 (ENSSGRG00000047180)	eif4ebp1 (ENSSGRG00000047181)	ANK1 (ENSSGRG00000047184)	ENSSGRG00000047192	ENSSGRG00000047193
Cyprininae	ANCESTRAL SPECIES	207																ENSGT00520000055591.b.b ##22	ENSGT00940000157299.d.a	ENSGT00950000182964.a.b.a.a.b.e.f ##21	ENSGT00950000182964.a.b.a.a.b.f.i ##21	ENSGT00940000166638.c	ENSGT00390000010075	ENSGT00940000165107.A.d	ENSGT00940000156804.b.b	ENSGT00940000156814.a	ENSGT00940000153725.b.c.b	ENSGT00950000182909.a.e.a	ENSGT00940000154484.B.a.a.s.b	ENSGT00940000163919.b.b	ENSGT00940000159932.b.b	ENSGT00940000155760.t.b.c.b	ENSGT00730000111146.d
Cyprininae_a	ANCESTRAL SPECIES	33																ENSGT00520000055591.b.b ##22	ENSGT00940000157299.d.a	ENSGT00950000182964.a.b.a.a.b.e.f ##21	ENSGT00950000182964.a.b.a.a.b.f.i ##21	ENSGT00940000166638.c	ENSGT00390000010075	ENSGT00940000165107.A.d	ENSGT00940000156804.b.b	ENSGT00940000156814.a	ENSGT00950000182909.a.e.a	ENSGT00940000154484.B.a.a.s.b	ENSGT00940000163919.b.b	ENSGT00940000159932.b.b	ENSGT00940000155760.t.b.c.b	ENSGT00730000111146.d	ENSGT00390000002096.g.b
Common carp reference	MODERN SPECIES	45	fgf10a (ENSCCRG00000020695)	nnt (ENSCCRG00000057395)	ENSCCRG00000019874	ENSCCRG00000061180	ENSCCRG00000075254	eri1 (ENSCCRG00000075963)	ppp1r3b (ENSCCRG00000052865)	ENSCCRG00000016283	dusp4 (ENSCCRG00000072716)	ENSCCRG00000065734	zgc:86764 (ENSCCRG00000057589)	ENSCCRG00000009154	slc26a1 (ENSCCRG00000026869)	rbp4l (ENSCCRG00000009763)	atp5mea (ENSCCRG00000009111)	zgc:103482 (ENSCCRG00000009120) ##22	ENSCCRG00000009104	ENSCCRG00000056098 ##21	gadd45gb.1 (ENSCCRG00000005232) ##21	ENSCCRG00000032079	ghrb (ENSCCRG00000064776)	oxct1b (ENSCCRG00000010498)	ENSCCRG00000011078	ENSCCRG00000058122	rnf180b (ENSCCRG00000062640)	ndr1 (ENSCCRG00000037992)	ENSCCRG00000058976	ftsj1 (ENSCCRG00000046518)	ENSCCRG00000039490	lifrb (ENSCCRG00000039480)	ccdc61 (ENSCCRG00000039384)
Zebrafish	MODERN SPECIES	13	ENSDARG00000044695	ENSDARG00000044694	MFHAS1 (ENSDARG00000079104)	eri1 (ENSDARG00000044692)	ppp1r3b (ENSDARG00000044691)	ENSDARG00000077650	dusp4 (ENSDARG00000044688)	ENSDARG00000001906	zgc:86764 (ENSDARG00000005098)	slc26a1 (ENSDARG00000029832)	rbp4l (ENSDARG00000044684)	PDE6B (ENSDARG00000011671)	atp5mea (ENSDARG00000078113)	hspb9l (ENSDARG00000002204)	ENSDARG00000057238	zgc:103482 (ENSDARG00000025174) ##22	EFNA5 (ENSDARG00000089790)	GADD45G (ENSDARG00000113103) ##21	gadd45gb.1 (ENSDARG00000016725) ##21	ENSDARG00000079031	ghrb (ENSDARG00000007671)	oxct1b (ENSDARG00000054319)	ENSDARG00000093052	c7b (ENSDARG00000057121)	c6 (ENSDARG00000057113)	rgs7bpb (ENSDARG00000016742)	rnf180b (ENSDARG00000057101)	htr1ab (ENSDARG00000057098)	ndr1 (ENSDARG00000057096)	eif4ebp1 (ENSDARG00000043608)	ANK1 (ENSDARG00000074777)
Clupeiformes	ANCESTRAL SPECIES	16																ENSGT00520000055591.b ##22	ENSGT00940000157299.d	ENSGT00950000182964.a.b.a.a.b.e.g ##21	ENSGT00950000182964.a.b.a.a.b.f ##21	ENSGT00940000166638	ENSGT00940000165107.A	ENSGT00390000009130.b.d.b	ENSGT00940000156804.b	ENSGT00940000156814	ENSGT00940000153725.b.c	ENSGT00950000182909.a.e	ENSGT00940000154484.B.a.a	ENSGT00940000163919.b	ENSGT00940000159932.b	ENSGT00940000155760.t.b	ENSGT00730000111146
Atlantic herring	MODERN SPECIES	3	ADRA2B (ENSCHAG00000021606)	ENSCHAG00000021598	zcchc9 (ENSCHAG00000021590)	ACOT12 (ENSCHAG00000021583)	ENSCHAG00000021513	xrcc4 (ENSCHAG00000021471)	vcanb (ENSCHAG00000021438)	HAPLN1 (ENSCHAG00000021435)	ENSCHAG00000021431	EDIL3 (ENSCHAG00000021341)	RASA1 (ENSCHAG00000020424)	nkx6.1 (ENSCHAG00000020361)	gpat3 (ENSCHAG00000020150)	ENSCHAG00000020125	ENSCHAG00000020108	zgc:103482 (ENSCHAG00000020094) ##22	EFNA5 (ENSCHAG00000020078)	GADD45G (ENSCHAG00000020015) ##21	gadd45gb.1 (ENSCHAG00000019991) ##21	ENSCHAG00000019985	ghrb (ENSCHAG00000019964)	oxct1b (ENSCHAG00000016490)	c7b (ENSCHAG00000015930)	ENSCHAG00000015914	ENSCHAG00000015910	NARS1 (ENSCHAG00000015561)	fech (ENSCHAG00000015348)	ONECUT2 (ENSCHAG00000015329)	st8sia3 (ENSCHAG00000015314)	ENSCHAG00000015293	ENSCHAG00000015289
Denticle herring	MODERN SPECIES	13	ENSDCDG00000023350	med15 (ENSDCDG00000023345)	si:ch211-222n4.2 (ENSDCDG00000023341)	smpd4 (ENSDCDG00000023292)	TMEM132C (ENSDCDG00000023286)	ENSDCDG00000023285	ENSDCDG00000023282	RIMBP2 (ENSDCDG00000023250)	stx2a (ENSDCDG00000023238)	ENSDCDG00000023232	ENSDCDG00000023227	ENSDCDG00000023225	ENSDCDG00000023223	ENSDCDG00000023221	ENSDCDG00000023219	zgc:103482 (ENSDCDG00000023212) ##22	EFNA5 (ENSDCDG00000023205)	ENSDCDG00000023203	GADD45G (ENSDCDG00000023134) ##21	GADD45G (ENSDCDG00000023130) ##21	ENSDCDG00000023127	ghrb (ENSDCDG00000023125)	oxct1b (ENSDCDG00000023105)	c7b (ENSDCDG00000022873)	c6 (ENSDCDG00000022740)	rnf180b (ENSDCDG00000022725)	htr1ab (ENSDCDG00000022724)	ndr1 (ENSDCDG00000022689)	eif4ebp1 (ENSDCDG00000022688)	ANK1 (ENSDCDG00000022115)	ftsj1 (ENSDCDG00000022106)
Euteleosteomorpha	ANCESTRAL SPECIES	32	ENSGT00940000156997.a	ENSGT00390000018830.a.a	ENSGT00940000165146	ENSGT01050000244902.a.a.a.a.a.b	ENSGT00390000007246	ENSGT00940000155498	ENSGT00390000004511.c.b	ENSGT00940000155135	ENSGT00940000156114.d	ENSGT00940000154078.b.b	ENSGT00510000049555	ENSGT00390000004511.c.a	ENSGT01010000222762.a	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000156973	ENSGT00940000157299.c	ENSGT00950000182964.a.b.a.a.a ##21	ENSGT00940000160343	ENSGT00940000165543	ENSGT00940000154668	ENSGT00510000049326.b.b	ENSGT00940000165107.B	ENSGT00390000014416	ENSGT00390000011383	ENSGT00390000009130.b.d.a	ENSGT00940000158747	ENSGT00940000156804.a
Acanthomorphata	ANCESTRAL SPECIES	13	ENSGT00940000156997.a	ENSGT00390000018830.a.a	ENSGT01050000244902.a.a.a.a.a.b	ENSGT00390000007246	ENSGT00940000155498	ENSGT00390000004511.c.b	ENSGT00940000155135	ENSGT00940000156114.d	ENSGT00940000154078.b.b	ENSGT00510000049555	ENSGT00390000004511.c.a	ENSGT01030000234769	ENSGT00530000063923	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000156973	ENSGT00940000157299.c	ENSGT00950000182964.a.b.a.a.a ##21	ENSGT00940000160343	ENSGT00940000165543	ENSGT00940000154668	ENSGT00510000049326.b.b	ENSGT00940000165107.B	ENSGT00390000014416	ENSGT00390000011383	ENSGT00390000009130.b.d.a	ENSGT00940000158747	ENSGT00940000156804.a
Euacanthomorphacea	ANCESTRAL SPECIES	14	ENSGT00550000074846.jb.a	ENSGT00940000156997.a	ENSGT00390000018830.a.a	ENSGT01050000244902.a.a.a.a.a.b	ENSGT00390000007246	ENSGT00940000155498	ENSGT00390000004511.c.b	ENSGT00940000155135	ENSGT00940000156114.d	ENSGT00940000154078.b.b	ENSGT00510000049555	ENSGT00390000004511.c.a	ENSGT01030000234769	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000156973	ENSGT00940000157299.c	ENSGT00950000182964.a.b.a.a.a ##21	ENSGT00940000160343	ENSGT00940000165543	ENSGT00940000154668	ENSGT00510000049326.b.b	ENSGT00940000165107.B	ENSGT00390000014416	ENSGT00390000011383	ENSGT00390000009130.b.d.a	ENSGT00940000158747	ENSGT00940000156804.a
Percomorphaceae	ANCESTRAL SPECIES	2	ENSGT00940000156997.a	ENSGT00390000018830.a.a	ENSGT01050000244902.a.a.a.a.a.b	ENSGT00390000007246	ENSGT00940000155498	ENSGT00390000004511.c.b	ENSGT00940000155135	ENSGT00940000156114.d	ENSGT00440000033609.x	ENSGT00940000154078.b.b	ENSGT00510000049555	ENSGT00390000004511.c.a	ENSGT01030000234769	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000156973	ENSGT00940000157299.c	ENSGT00950000182964.a.b.a.a.a ##21	ENSGT00940000160343	ENSGT00940000165543	ENSGT00940000154668	ENSGT00510000049326.b.b	ENSGT00940000165107.B	ENSGT00390000014416	ENSGT00390000011383	ENSGT00390000009130.b.d.a	ENSGT00940000158747	ENSGT00940000156804.a
Tiger tail seahorse	MODERN SPECIES	67	rassf2a (ENSHCOG00000004376)	ENSHCOG00000004307	ptger4a (ENSHCOG00000004298)	mrps27 (ENSHCOG00000000714)	ENSHCOG00000004277	ZNF366 (ENSHCOG00000004268)	oxt (ENSHCOG00000004223)	fabp1b.1 (ENSHCOG00000003848)	smyd1b (ENSHCOG00000003881)	ENSHCOG00000003818	LZTS3 (ENSHCOG00000003653)	ubox5 (ENSHCOG00000003629)	avp (ENSHCOG00000003618)	ENSHCOG00000003534	znf367 (ENSHCOG00000003533)	HABP4 (ENSHCOG00000003516) ##22	cdc14b (ENSHCOG00000003498)	PRXL2C (ENSHCOG00000003454)	ENSHCOG00000003434
Percomorphaceae_B	ANCESTRAL SPECIES	7	ENSGT00940000156997.a	ENSGT00390000018830.a.a	ENSGT01050000244902.a.a.a.a.a.b	ENSGT00390000007246	ENSGT00940000155498	ENSGT00390000004511.c.b	ENSGT00940000155135	ENSGT00940000156114.d	ENSGT00440000033609.x	ENSGT00940000154078.b.b	ENSGT00510000049555	ENSGT00390000004511.c.a	ENSGT01030000234769	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000156973	ENSGT00940000157299.c	ENSGT00950000182964.a.b.a.a.a ##21	ENSGT00940000160343	ENSGT00940000165543	ENSGT00940000154668	ENSGT00510000049326.b.b	ENSGT00940000165107.B	ENSGT00390000014416	ENSGT00390000011383	ENSGT00390000009130.b.d.a	ENSGT00940000158747	ENSGT00940000156804.a
Ovalentaria	ANCESTRAL SPECIES	4	ENSGT00940000156997.a	ENSGT00390000018830.a.a	ENSGT01050000244902.a.a.a.a.a.b	ENSGT00390000007246	ENSGT00940000155498	ENSGT00390000004511.c.b	ENSGT00940000155135	ENSGT00940000156114.d	ENSGT01010000225578	ENSGT00940000154078.b.b	ENSGT00510000049555	ENSGT00390000004511.c.a	ENSGT01030000234769	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000156973	ENSGT00940000157299.c	ENSGT00950000182964.a.b.a.a.a ##21	ENSGT00940000160343	ENSGT00940000165543	ENSGT00940000154668	ENSGT00510000049326.b.b	ENSGT00940000165107.B	ENSGT00390000014416	ENSGT00390000011383	ENSGT00390000009130.b.d.a	ENSGT00940000158747	ENSGT00940000156804.a
Atherinomorphae	ANCESTRAL SPECIES	1	ENSGT00550000074846.jb.a	ENSGT00940000156997.a	ENSGT00390000018830.a.a	ENSGT01050000244902.a.a.a.a.a.b	ENSGT00390000007246	ENSGT00940000155498	ENSGT00390000004511.c.b	ENSGT00940000155135	ENSGT00940000156114.d	ENSGT00940000154078.b.b	ENSGT00510000049555	ENSGT00390000004511.c.a	ENSGT01030000234769	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000156973	ENSGT00940000157299.c	ENSGT00950000182964.a.b.a.a.a ##21	ENSGT00940000160343	ENSGT00940000165543	ENSGT00940000154668	ENSGT00510000049326.b.b	ENSGT00940000165107.B	ENSGT00390000014416	ENSGT00390000011383	ENSGT00390000009130.b.d.a	ENSGT00940000158747	ENSGT00940000156804.a
Cyprinodontiformes	ANCESTRAL SPECIES	1	ENSGT00550000074846.jb.a	ENSGT00940000156997.a	ENSGT00390000018830.a.a	ENSGT01050000244902.a.a.a.a.a.b	ENSGT00390000007246	ENSGT00940000155498	ENSGT00390000004511.c.b	ENSGT00940000155135	ENSGT00940000156114.d	ENSGT00940000154078.b.b	ENSGT00510000049555	ENSGT00390000004511.c.a	ENSGT01030000234769	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000156973	ENSGT00940000157299.c	ENSGT00950000182964.a.b.a.a.a ##21	ENSGT00940000160343	ENSGT00940000165543	ENSGT00940000154668	ENSGT00510000049326.b.b	ENSGT00940000165107.B	ENSGT00390000014416	ENSGT00390000011383	ENSGT00390000009130.b.d.a	ENSGT00940000158747	ENSGT00940000156804.a
Aplocheiloidei	ANCESTRAL SPECIES	21	ENSGT00550000074846.jb.a	ENSGT00940000156997.a	ENSGT00390000018830.a.a	ENSGT01050000244902.a.a.a.a.a.b	ENSGT00390000007246	ENSGT00940000155498	ENSGT00390000004511.c.b	ENSGT00940000155135	ENSGT00940000156114.d	ENSGT00940000154078.b.b	ENSGT00510000049555	ENSGT00390000004511.c.a	ENSGT01030000234769	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000156973	ENSGT00940000157299.c	ENSGT00950000182964.a.b.a.a.a ##21	ENSGT00940000160343	ENSGT00940000165543	ENSGT00940000154668	ENSGT00510000049326.b.b	ENSGT00940000165107.B	ENSGT00390000014416	ENSGT00390000011383	ENSGT00390000009130.b.d.a	ENSGT00940000158747	ENSGT00940000156804.a
Mangrove rivulus	MODERN SPECIES	21	atp5fa1 (ENSKMAG00000000683)	RNF165 (ENSKMAG00000000625)	LOXHD1 (ENSKMAG00000000506)	ptger4a (ENSKMAG00000000495)	mrps27 (ENSKMAG00000000487)	ZNF366 (ENSKMAG00000000453)	oxt (ENSKMAG00000000426)	fabp1b.1 (ENSKMAG00000000420)	smyd1b (ENSKMAG00000000360)	LZTS3 (ENSKMAG00000000281)	ubox5 (ENSKMAG00000000268)	avp (ENSKMAG00000000261)	ENSKMAG00000000257	ENSKMAG00000000245	znf367 (ENSKMAG00000000204)	HABP4 (ENSKMAG00000000193) ##22	cdc14b (ENSKMAG00000000147)	PRXL2C (ENSKMAG00000022259)	FBXL17 (ENSKMAG00000022257)	EFNA5 (ENSKMAG00000022254)	gadd45ga (ENSKMAG00000022252) ##21	creb3l3l (ENSKMAG00000022247)	ENSKMAG00000022246	znf131 (ENSKMAG00000022244)	ENSKMAG00000022243	ghra (ENSKMAG00000022238)
Turquoise killifish	MODERN SPECIES	1627	Nfu_g_1_009250 (ENSNFUG00015010995)	RNF165 (ENSNFUG00015010960)	ENSNFUG00015010871	PTGER4A (ENSNFUG00015010865)	mrps27 (ENSNFUG00015010841)	ZNF366 (ENSNFUG00015010824)	oxt (ENSNFUG00015010813)	FABP1 (ENSNFUG00015010807)	smyd1b (ENSNFUG00015010420)	ENSNFUG00015010376	ENSNFUG00015010373	ubox5 (ENSNFUG00015010361)	avp (ENSNFUG00015010353)	ENSNFUG00015010345	SLC35D2 (ENSNFUG00015010306)	ENSNFUG00015010283 ##22	CDC14B (ENSNFUG00015010206)	PRXL2C (ENSNFUG00015010139)	FBXL17 (ENSNFUG00015010128)	EFNA5 (ENSNFUG00015010093)	gadd45ga (ENSNFUG00015010070) ##21	ENSNFUG00015010059	AL929453.1 (ENSNFUG00015010048)	znf131 (ENSNFUG00015010023)	ENSNFUG00015010015	GHRA (ENSNFUG00015009884)	FBXO4 (ENSNFUG00015009864)	C8H5ORF51 (ENSNFUG00015009857)	ENSNFUG00015009848	ENSNFUG00015023427	oxct1a (ENSNFUG00015022198)
Cyprinodontoidei	ANCESTRAL SPECIES	1	ENSGT00940000156997.a	ENSGT00390000018830.a.a	ENSGT01050000244902.a.a.a.a.a.b	ENSGT00390000007246	ENSGT00940000155498	ENSGT00390000004511.c.b	ENSGT00940000155135	ENSGT00940000156114.d	ENSGT00940000154078.b.b	ENSGT00510000049555	ENSGT00390000004511.c.a	ENSGT01030000234769	ENSGT01040000240975	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000156973	ENSGT00940000157299.c	ENSGT00950000182964.a.b.a.a.a ##21	ENSGT00940000160343	ENSGT00940000165543	ENSGT00940000154668	ENSGT00510000049326.b.b	ENSGT00940000165107.B	ENSGT00390000014416	ENSGT00390000011383	ENSGT00390000009130.b.d.a	ENSGT00940000158747	ENSGT00940000156804.a
Poeciliinae	ANCESTRAL SPECIES	5	ENSGT00940000156997.a	ENSGT00390000018830.a.a	ENSGT01050000244902.a.a.a.a.a.b	ENSGT00390000007246	ENSGT00940000155498	ENSGT00390000004511.c.b	ENSGT00940000155135	ENSGT00940000156114.d	ENSGT00940000154078.b.b	ENSGT00510000049555	ENSGT00390000004511.c.a	ENSGT01030000234769	ENSGT01040000240975	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000156973	ENSGT00940000157299.c	ENSGT00950000182964.a.b.a.a.a ##21	ENSGT00940000160343	ENSGT00940000165543	ENSGT00940000154668	ENSGT00510000049326.b.b	ENSGT00940000165107.B	ENSGT00390000014416	ENSGT00390000011383	ENSGT00390000009130.b.d.a	ENSGT00940000158747	ENSGT00940000156804.a
Poecilia	ANCESTRAL SPECIES	3	ENSGT00940000156997.a	ENSGT00390000018830.a.a	ENSGT01050000244902.a.a.a.a.a.b	ENSGT00390000007246.n	ENSGT00940000155498	ENSGT00390000004511.c.b	ENSGT00940000155135	ENSGT00940000156114.d	ENSGT00940000154078.b.b	ENSGT00510000049555	ENSGT00390000004511.c.a	ENSGT01030000234769	ENSGT01040000240975	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000156973	ENSGT00940000157299.c	ENSGT00950000182964.a.b.a.a.a ##21	ENSGT00940000160343	ENSGT00940000165543	ENSGT00940000154668	ENSGT00510000049326.b.b	ENSGT00940000165107.B	ENSGT00390000014416	ENSGT00390000011383	ENSGT00390000009130.b.d.a	ENSGT00940000158747.g.a	ENSGT00940000156804.a
NAME_6	ANCESTRAL SPECIES	82	ENSGT00940000156997.a	ENSGT00390000018830.a.a	ENSGT01050000244902.a.a.a.a.a.b	ENSGT00390000007246.n	ENSGT00940000155498	ENSGT00390000004511.c.b	ENSGT00940000155135	ENSGT00940000156114.d	ENSGT00940000154078.b.b	ENSGT00510000049555	ENSGT00390000004511.c.a	ENSGT01030000234769	ENSGT01040000240975	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155899.f	ENSGT00510000048363	ENSGT00940000156973	ENSGT00940000157299.c	ENSGT00950000182964.a.b.a.a.a ##21	ENSGT00940000160343	ENSGT00940000165543	ENSGT00940000154668	ENSGT00510000049326.b.b	ENSGT00940000165107.B	ENSGT00390000014416	ENSGT00390000011383	ENSGT00390000009130.b.d.a	ENSGT00940000158747.g.b
Amazon molly	MODERN SPECIES	340	ZNF366 (ENSPFOG00000007607)	oxt (ENSPFOG00000024185)	oxt (ENSPFOG00000007415)	FABP1 (ENSPFOG00000007439)	smyd1b (ENSPFOG00000007466)	LZTS3 (ENSPFOG00000007556)	oxt (ENSPFOG00000007631)	FABP1 (ENSPFOG00000007635)	smyd1b (ENSPFOG00000007637)	ubox5 (ENSPFOG00000007713)	avp (ENSPFOG00000007734)	ENSPFOG00000022455	ENSPFOG00000023619	ENSPFOG00000007743	znf367 (ENSPFOG00000007837)	ENSPFOG00000007883 ##22	ENSPFOG00000007992	PRXL2C (ENSPFOG00000008195)	FBXL17 (ENSPFOG00000008199)	EFNA5 (ENSPFOG00000008227)	gadd45ga (ENSPFOG00000008266) ##21	ENSPFOG00000008299	ENSPFOG00000008347	znf131 (ENSPFOG00000008390)	ENSPFOG00000008493	ghra (ENSPFOG00000008511)	FBXO4 (ENSPFOG00000008609)	rimoc1 (ENSPFOG00000008664)	oxct1a (ENSPFOG00000008710)	plcxd3 (ENSPFOG00000008941)	ENSPFOG00000008948
Sailfin molly	MODERN SPECIES	291						oxt (ENSPLAG00000003398)	fabp1b.1 (ENSPLAG00000003390)	smyd1b (ENSPLAG00000003383)	LZTS3 (ENSPLAG00000003374)	ubox5 (ENSPLAG00000003330)	avp (ENSPLAG00000003316)	ENSPLAG00000003305	ENSPLAG00000003278	ENSPLAG00000003261	znf367 (ENSPLAG00000003233)	ENSPLAG00000003224 ##22	ENSPLAG00000003204	PRXL2C (ENSPLAG00000003185)	FBXL17 (ENSPLAG00000000800)
Guppy	MODERN SPECIES	461	RNF165 (ENSPREG00000015002)	LOXHD1 (ENSPREG00000015051)	ptger4a (ENSPREG00000015115)	mrps27 (ENSPREG00000015143)	ZNF366 (ENSPREG00000015170)	oxt (ENSPREG00000015204)	fabp1b.1 (ENSPREG00000015304)	smyd1b (ENSPREG00000015390)	LZTS3 (ENSPREG00000015422)	ubox5 (ENSPREG00000015495)	avp (ENSPREG00000015860)	ENSPREG00000015875	ENSPREG00000015898	ENSPREG00000015919	znf367 (ENSPREG00000015934)	zgc:103482 (ENSPREG00000015946) ##22	cdc14b (ENSPREG00000015976)	PRXL2C (ENSPREG00000016030)	ENSPREG00000016113	ENSPREG00000016133	EFNA5 (ENSPREG00000016157)	gadd45ga (ENSPREG00000016178) ##21	creb3l3l (ENSPREG00000016202)	ENSPREG00000016236	znf131 (ENSPREG00000016260)	ENSPREG00000016277	ghra (ENSPREG00000016286)	FBXO4 (ENSPREG00000016319)	rimoc1 (ENSPREG00000016345)	oxct1a (ENSPREG00000016384)	plcxd3 (ENSPREG00000016419)
Platyfish	MODERN SPECIES	3	atp5fa1 (ENSXMAG00000003443)	RNF165 (ENSXMAG00000003431)	LOXHD1 (ENSXMAG00000016129)	ptger4a (ENSXMAG00000016127)	mrps27 (ENSXMAG00000016098)	ZNF366 (ENSXMAG00000016095)	oxt (ENSXMAG00000016093)	fabp1b.1 (ENSXMAG00000016082)	smyd1b (ENSXMAG00000016048)	LZTS3 (ENSXMAG00000021443)	ubox5 (ENSXMAG00000016011)	avp (ENSXMAG00000016007)	ENSXMAG00000027378	ENSXMAG00000027872	znf367 (ENSXMAG00000015989)	HABP4 (ENSXMAG00000015986) ##22	cdc14b (ENSXMAG00000015974)	PRXL2C (ENSXMAG00000015964)	ENSXMAG00000015963	ENSXMAG00000025889	ENSXMAG00000027473	EFNA5 (ENSXMAG00000015959)	ENSXMAG00000027422	gadd45ga (ENSXMAG00000015952) ##21	creb3l3l (ENSXMAG00000015950)	ENSXMAG00000015948	znf131 (ENSXMAG00000015940)	ENSXMAG00000015937	ghra (ENSXMAG00000015913)	FBXO4 (ENSXMAG00000015910)	rimoc1 (ENSXMAG00000015907)
NAME_4	ANCESTRAL SPECIES	24	ENSGT00940000156997.a	ENSGT00390000018830.a.a	ENSGT01050000244902.a.a.a.a.a.b	ENSGT00390000007246	ENSGT00940000155498	ENSGT00390000004511.c.b	ENSGT00940000155135	ENSGT00940000156114.d	ENSGT00940000154078.b.b	ENSGT00510000049555	ENSGT00390000004511.c.a	ENSGT01030000234769	ENSGT01040000240975	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155899.f	ENSGT00510000048363	ENSGT00940000156973	ENSGT00940000157299.c	ENSGT00950000182964.a.b.a.a.a ##21	ENSGT00940000160343	ENSGT00940000165543	ENSGT00940000154668	ENSGT00510000049326.b.b	ENSGT00940000165107.B	ENSGT00390000014416	ENSGT00390000011383	ENSGT00390000009130.b.d.a	ENSGT00940000158747	ENSGT00940000156804.a
Mummichog	MODERN SPECIES	2272	LOXHD1 (ENSFHEG00000019242)	ENSFHEG00000019116	ptger4a (ENSFHEG00000019077)	mrps27 (ENSFHEG00000019064)	ZNF366 (ENSFHEG00000019048)	oxt (ENSFHEG00000018972)	fabp1b.1 (ENSFHEG00000018889)	smyd1b (ENSFHEG00000018958)	LZTS3 (ENSFHEG00000018873)	ubox5 (ENSFHEG00000018777)	avp (ENSFHEG00000018743)	ENSFHEG00000018466	ENSFHEG00000018455	ENSFHEG00000018442	znf367 (ENSFHEG00000018383)	ENSFHEG00000018366 ##22	ENSFHEG00000018351	PRXL2C (ENSFHEG00000018329)	FBXL17 (ENSFHEG00000018301)	ENSFHEG00000018260	EFNA5 (ENSFHEG00000018241)	gadd45ga (ENSFHEG00000018235) ##21	creb3l3l (ENSFHEG00000018222)	ENSFHEG00000018204	ENSFHEG00000018191	ENSFHEG00000018183	ghra (ENSFHEG00000018151)	FBXO4 (ENSFHEG00000018143)	rimoc1 (ENSFHEG00000018130)	oxct1a (ENSFHEG00000018123)	plcxd3 (ENSFHEG00000018099)
Sheepshead minnow	MODERN SPECIES	259	LOXHD1 (ENSCVAG00000020577)	ptger4a (ENSCVAG00000020584)	mrps27 (ENSCVAG00000020594)	ZNF366 (ENSCVAG00000020622)	oxt (ENSCVAG00000020628)	FABP1 (ENSCVAG00000020635)	FABP1 (ENSCVAG00000020643)	smyd1b (ENSCVAG00000020694)	LZTS3 (ENSCVAG00000020704)	ubox5 (ENSCVAG00000020707)	avp (ENSCVAG00000020720)	ENSCVAG00000000533	ENSCVAG00000020759	ENSCVAG00000020768	znf367 (ENSCVAG00000020787)	ENSCVAG00000020812 ##22	ENSCVAG00000020855	PRXL2C (ENSCVAG00000020864)	FBXL17 (ENSCVAG00000020898)	ENSCVAG00000020907
Oryzias	ANCESTRAL SPECIES	7	ENSGT00940000156730.a	ENSGT00550000074846.jb.a	ENSGT00940000156997.a	ENSGT00390000018830.a.a	ENSGT01050000244902.a.a.a.a.a.b	ENSGT00390000007246	ENSGT00940000155498	ENSGT00390000004511.c.b	ENSGT00940000155135	ENSGT00940000156114.d	ENSGT00940000154078.b.b	ENSGT00510000049555	ENSGT00390000004511.c.a	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00940000168987	ENSGT00940000155899.f	ENSGT00510000048363	ENSGT00940000156973	ENSGT00940000157299.c	ENSGT00950000182964.a.b.a.a.a ##21	ENSGT00940000160343	ENSGT00940000165543	ENSGT00940000154668	ENSGT00510000049326.b.b	ENSGT00940000165107.B	ENSGT00390000014416	ENSGT00390000011383	ENSGT00390000009130.b.d.a
Oryzias_a	ANCESTRAL SPECIES	3	ENSGT00940000156730.a	ENSGT00550000074846.jb.a	ENSGT00940000156997.a	ENSGT00390000018830.a.a	ENSGT01050000244902.a.a.a.a.a.b	ENSGT00390000007246	ENSGT00940000155498	ENSGT00390000004511.c.b	ENSGT00940000155135	ENSGT00940000156114.d	ENSGT00940000154078.b.b	ENSGT00510000049555	ENSGT00390000004511.c.a	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155899.f	ENSGT00510000048363	ENSGT00940000156973	ENSGT00940000157299.c	ENSGT00950000182964.a.b.a.a.a ##21	ENSGT00940000159261.c	ENSGT00940000165543	ENSGT00940000154668	ENSGT00510000049326.b.b	ENSGT00940000165107.B	ENSGT00390000014416	ENSGT00390000011383	ENSGT00390000009130.b.d.a	ENSGT00940000158747	ENSGT00940000156804.a
Japanese Medaka HdrR	MODERN SPECIES	23	ENSORLG00000003714	atp5fa1 (ENSORLG00000003740)	ENSORLG00000003744	ENSORLG00000003772	ptger4a (ENSORLG00000023313)	mrps27 (ENSORLG00000003800)	ZNF366 (ENSORLG00000003805)	oxt (ENSORLG00000003809)	smyd1b (ENSORLG00000003877)	fabp1b.1 (ENSORLG00000003820)	LZTS3 (ENSORLG00000025657)	ubox5 (ENSORLG00000003900)	oxt (ENSORLG00000022162)	SLC35D2 (ENSORLG00000003918)	znf367 (ENSORLG00000003923)	ENSORLG00000003929 ##22	ENSORLG00000003939	PRXL2C (ENSORLG00000003947)	ENSORLG00000003953	ENSORLG00000028781	EFNA5 (ENSORLG00000024518)	gadd45ga (ENSORLG00000030080) ##21	ENSORLG00000003988	ENSORLG00000003997	znf131 (ENSORLG00000004007)	ENSORLG00000023578	ghra (ENSORLG00000004053)	FBXO4 (ENSORLG00000004065)	rimoc1 (ENSORLG00000004076)	oxct1a (ENSORLG00000004169)	plcxd3 (ENSORLG00000004185)
Chinese medaka	MODERN SPECIES	1064	ENSOSIG00000021980	atp5fa1 (ENSOSIG00000021968)	RNF165 (ENSOSIG00000021953)	ENSOSIG00000021950	ptger4a (ENSOSIG00000021949)	mrps27 (ENSOSIG00000021942)	ZNF366 (ENSOSIG00000021930)	oxt (ENSOSIG00000021927)	fabp1b.1 (ENSOSIG00000021923)	smyd1b (ENSOSIG00000021897)	LZTS3 (ENSOSIG00000021883)	ubox5 (ENSOSIG00000021875)	avp (ENSOSIG00000021870)	SLC35D2 (ENSOSIG00000021836)	znf367 (ENSOSIG00000021821)	ENSOSIG00000021817 ##22	ENSOSIG00000021804	PRXL2C (ENSOSIG00000021780)	ENSOSIG00000021773	EFNA5 (ENSOSIG00000021767)	gadd45ga (ENSOSIG00000021757) ##21	ENSOSIG00000021752	ENSOSIG00000021749	znf131 (ENSOSIG00000021744)	ENSOSIG00000021741	ghra (ENSOSIG00000021735)	FBXO4 (ENSOSIG00000021731)	rimoc1 (ENSOSIG00000021727)	oxct1a (ENSOSIG00000021093)	plcxd3 (ENSOSIG00000021053)	ENSOSIG00000020996
Oryzias_b	ANCESTRAL SPECIES	6	ENSGT00940000156730.a	ENSGT00550000074846.jb.a	ENSGT00940000156997.a	ENSGT00390000018830.a.a	ENSGT01050000244902.a.a.a.a.a.b	ENSGT00390000007246	ENSGT00940000155498	ENSGT00390000004511.c.b	ENSGT00940000155135	ENSGT00940000156114.d	ENSGT00940000154078.b.b	ENSGT00510000049555	ENSGT00390000004511.c.a	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000156973	ENSGT00940000157299.c	ENSGT00950000182964.a.b.a.a.a ##21	ENSGT00940000160343	ENSGT00940000165543	ENSGT00940000154668	ENSGT00510000049326.b.b	ENSGT00940000165107.B	ENSGT00390000014416	ENSGT00390000011383	ENSGT00390000009130.b.d.a	ENSGT00940000158747	ENSGT00940000156804.a
Indian medaka	MODERN SPECIES	11	ENSOMEG00000020349	atp5fa1 (ENSOMEG00000020428)	RNF165 (ENSOMEG00000020471)	LOXHD1 (ENSOMEG00000020536)	ptger4a (ENSOMEG00000020568)	mrps27 (ENSOMEG00000020582)	ZNF366 (ENSOMEG00000020596)	ENSOMEG00000020609	fabp1b.1 (ENSOMEG00000020630)	smyd1b (ENSOMEG00000020657)	LZTS3 (ENSOMEG00000000780)	ubox5 (ENSOMEG00000020715)	avp (ENSOMEG00000020729)	ENSOMEG00000020780	znf367 (ENSOMEG00000020807)	HABP4 (ENSOMEG00000020869) ##22	cdc14b (ENSOMEG00000020955)	PRXL2C (ENSOMEG00000021012)	ENSOMEG00000021068	EFNA5 (ENSOMEG00000021104)	gadd45ga (ENSOMEG00000021130) ##21	creb3l3l (ENSOMEG00000021148)	ENSOMEG00000000928	znf131 (ENSOMEG00000021225)	ENSOMEG00000021251	ghra (ENSOMEG00000021280)	FBXO4 (ENSOMEG00000021313)	rimoc1 (ENSOMEG00000021368)	oxct1a (ENSOMEG00000021425)	plcxd3 (ENSOMEG00000021452)	ENSOMEG00000021521
Ovalentaria_B	ANCESTRAL SPECIES	9	ENSGT00940000156997.a	ENSGT00390000018830.a.a	ENSGT01050000244902.a.a.a.a.a.b	ENSGT00390000007246	ENSGT00940000155498	ENSGT00390000004511.c.b	ENSGT00940000155135	ENSGT00940000156114.d	ENSGT01010000225578	ENSGT00940000154078.b.b	ENSGT00510000049555	ENSGT00390000004511.c.a	ENSGT01030000234769	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00940000168987	ENSGT00940000155899.f	ENSGT00510000048363	ENSGT00940000156973	ENSGT00940000157299.c	ENSGT00950000182964.a.b.a.a.a ##21	ENSGT00940000160343	ENSGT00940000165543	ENSGT00940000154668	ENSGT00510000049326.b.b	ENSGT00940000165107.B	ENSGT00390000014416	ENSGT00390000011383	ENSGT00390000009130.b.d.a
Cichlidae	ANCESTRAL SPECIES	6	ENSGT00940000156997.a	ENSGT00390000018830.a.a	ENSGT01050000244902.a.a.a.a.a.b	ENSGT00390000007246	ENSGT00940000155498	ENSGT00390000004511.c.b	ENSGT00940000155135	ENSGT00940000156114.d	ENSGT00940000154078.b.b	ENSGT00510000049555	ENSGT00390000004511.c.a	ENSGT01030000234769.b	ENSGT01030000234769.a	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000156973	ENSGT00940000157299.c	ENSGT00950000182964.a.b.a.a.a ##21	ENSGT00940000160343	ENSGT00940000165543	ENSGT00940000154668	ENSGT00510000049326.b.b	ENSGT00940000165107.B	ENSGT00390000014416	ENSGT00390000011383	ENSGT00390000009130.b.d.a	ENSGT00940000158747	ENSGT00940000156804.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	11	ENSGT00390000018830.a.a	ENSGT01050000244902.a.a.a.a.a.b	ENSGT00390000007246	ENSGT00940000155498	ENSGT00390000004511.c.b	ENSGT00940000155135	ENSGT00940000156114.d	ENSGT00940000154078.b.b	ENSGT00510000049555	ENSGT00390000004511.c.a	ENSGT01030000234769.b.b	ENSGT01030000234769.b.a	ENSGT01030000234769.a	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000156973	ENSGT00940000157299.c	ENSGT00950000182964.a.b.a.a.a ##21	ENSGT00940000160343	ENSGT00940000165543	ENSGT00940000154668	ENSGT00510000049326.b.b	ENSGT00940000165107.B	ENSGT00390000014416	ENSGT00390000011383	ENSGT00390000009130.b.d.a	ENSGT00940000158747	ENSGT00940000156804.a
Nile tilapia	MODERN SPECIES	3	atp5fa1 (ENSONIG00000015251)	RNF165 (ENSONIG00000015248)	ENSONIG00000015243	ptger4a (ENSONIG00000036613)	mrps27 (ENSONIG00000015240)	ZNF366 (ENSONIG00000015237)	oxt (ENSONIG00000015235)	fabp1b.1 (ENSONIG00000015231)	smyd1b (ENSONIG00000015226)	LZTS3 (ENSONIG00000028062)	ubox5 (ENSONIG00000015220)	avp (ENSONIG00000015218)	ENSONIG00000035803	ENSONIG00000041216	znf367 (ENSONIG00000015208)	ENSONIG00000015205 ##22	ENSONIG00000015204	PRXL2C (ENSONIG00000029438)	FBXL17 (ENSONIG00000015199)	ENSONIG00000033951	ENSONIG00000032758	EFNA5 (ENSONIG00000039021)	gadd45ga (ENSONIG00000015195) ##21	creb3l3l (ENSONIG00000015192)	ENSONIG00000041713	znf131 (ENSONIG00000015187)	SELENOP (ENSONIG00000015186)	ghr1 (ENSONIG00000015182)	FBXO4 (ENSONIG00000015180)	rimoc1 (ENSONIG00000015178)	oxct1a (ENSONIG00000015173)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	8	ENSGT00390000018830.a.a	ENSGT01050000244902.a.a.a.a.a.b	ENSGT00390000007246	ENSGT00940000155498	ENSGT00390000004511.c.b	ENSGT00940000155135	ENSGT00940000156114.d	ENSGT00940000154078.b.b	ENSGT00510000049555	ENSGT00390000004511.c.a	ENSGT01030000234769.b.b	ENSGT01030000234769.b.a	ENSGT01030000234769.a	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000156973	ENSGT00940000157299.c	ENSGT00950000182964.a.b.a.a.a ##21	ENSGT00940000160343	ENSGT00940000165543	ENSGT00940000154668	ENSGT00510000049326.b.b	ENSGT00940000165107.B	ENSGT00390000014416	ENSGT00390000011383	ENSGT00390000009130.b.d.a	ENSGT00940000158747	ENSGT00940000156804.a
Haplochromini	ANCESTRAL SPECIES	4	ENSGT00390000018830.a.a	ENSGT01050000244902.a.a.a.a.a.b	ENSGT00390000007246	ENSGT00940000155498	ENSGT00390000004511.c.b	ENSGT00940000155135	ENSGT00940000156114.d	ENSGT00940000154078.b.b	ENSGT00510000049555	ENSGT00390000004511.c.a	ENSGT01030000234769.b.b	ENSGT01030000234769.b.a	ENSGT01030000234769.a	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00940000155899.f	ENSGT00510000048363	ENSGT00940000156973	ENSGT00940000157299.c	ENSGT00950000182964.a.b.a.a.a ##21	ENSGT00940000160343	ENSGT00940000165543	ENSGT00940000154668	ENSGT00510000049326.b.b	ENSGT00940000165107.B	ENSGT00390000014416	ENSGT00390000011383	ENSGT00390000009130.b.d.a	ENSGT00940000158747
Haplochromini_A	ANCESTRAL SPECIES	4	ENSGT00390000018830.a.a	ENSGT01050000244902.a.a.a.a.a.b	ENSGT00390000007246	ENSGT00940000155498	ENSGT00390000004511.c.b	ENSGT00940000155135	ENSGT00940000156114.d	ENSGT00940000154078.b.b	ENSGT00510000049555	ENSGT00390000004511.c.a	ENSGT01030000234769.b.b	ENSGT01030000234769.b.a	ENSGT01030000234769.a	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000156973	ENSGT00940000157299.c	ENSGT00950000182964.a.b.a.a.a ##21	ENSGT00940000160343	ENSGT00940000165543	ENSGT00940000154668	ENSGT00510000049326.b.b	ENSGT00940000165107.B	ENSGT00390000014416	ENSGT00390000011383	ENSGT00390000009130.b.d.a	ENSGT00940000158747	ENSGT00940000156804.a
Haplochromini_B	ANCESTRAL SPECIES	2	ENSGT00390000018830.a.a	ENSGT01050000244902.a.a.a.a.a.b	ENSGT00390000007246	ENSGT00940000155498	ENSGT00390000004511.c.b	ENSGT00940000155135	ENSGT00940000156114.d	ENSGT00940000154078.b.b	ENSGT00510000049555	ENSGT00390000004511.c.a	ENSGT01030000234769.b.b	ENSGT01030000234769.b.a	ENSGT01030000234769.a	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000156973	ENSGT00940000157299.c	ENSGT00950000182964.a.b.a.a.a ##21	ENSGT00940000160343	ENSGT00940000165543	ENSGT00940000154668	ENSGT00510000049326.b.b	ENSGT00940000165107.B	ENSGT00390000014416	ENSGT00390000011383	ENSGT00390000009130.b.d.a	ENSGT00940000158747	ENSGT00940000156804.a
Eastern happy	MODERN SPECIES	3	LOXHD1 (ENSACLG00000013553)	ptger4a (ENSACLG00000013660)	mrps27 (ENSACLG00000013665)	ZNF366 (ENSACLG00000013686)	oxt (ENSACLG00000013700)	fabp1b.1 (ENSACLG00000013711)	smyd1b (ENSACLG00000013717)	LZTS3 (ENSACLG00000013785)	ubox5 (ENSACLG00000013871)	avp (ENSACLG00000013883)	ENSACLG00000013887	ENSACLG00000013890	ENSACLG00000013899	ENSACLG00000013910	znf367 (ENSACLG00000013941)	zgc:103482 (ENSACLG00000013964) ##22	ENSACLG00000013986	PRXL2C (ENSACLG00000014193)	ENSACLG00000014286	ENSACLG00000014342	EFNA5 (ENSACLG00000014356)	gadd45ga (ENSACLG00000014490) ##21	creb3l3l (ENSACLG00000014496)	ENSACLG00000014501	znf131 (ENSACLG00000014569)	SELENOP (ENSACLG00000014589)	ghra (ENSACLG00000014631)	FBXO4 (ENSACLG00000014664)	rimoc1 (ENSACLG00000014689)	oxct1a (ENSACLG00000014769)	plcxd3 (ENSACLG00000014833)
Zebra mbuna	MODERN SPECIES	1094	LOXHD1 (ENSMZEG00005008132)	ptger4a (ENSMZEG00005008106)	mrps27 (ENSMZEG00005008090)	ZNF366 (ENSMZEG00005008068)	oxt (ENSMZEG00005008059)	fabp1b.1 (ENSMZEG00005008045)	smyd1b (ENSMZEG00005007998)	LZTS3 (ENSMZEG00005007978)	ubox5 (ENSMZEG00005007972)	avp (ENSMZEG00005007270)	ENSMZEG00005007254	ENSMZEG00005007247	ENSMZEG00005007240	ENSMZEG00005007193	znf367 (ENSMZEG00005007178)	zgc:103482 (ENSMZEG00005007159) ##22	cdc14b (ENSMZEG00005007117)	PRXL2C (ENSMZEG00005007101)	FBXL17 (ENSMZEG00005007067)	EFNA5 (ENSMZEG00005007049)	ENSMZEG00005007038	gadd45ga (ENSMZEG00005007026) ##21	creb3l3l (ENSMZEG00005007017)	ENSMZEG00005007004	ENSMZEG00005006984	znf131 (ENSMZEG00005006971)	SELENOP (ENSMZEG00005006922)	ghra (ENSMZEG00005006896)	FBXO4 (ENSMZEG00005006879)	rimoc1 (ENSMZEG00005006858)	oxct1a (ENSMZEG00005006799)
P. nyererei	MODERN SPECIES	408	RNF165 (ENSPNYG00000016674)	LOXHD1 (ENSPNYG00000016406)	ptger4a (ENSPNYG00000016338)	mrps27 (ENSPNYG00000016318)	ZNF366 (ENSPNYG00000016280)	fabp1b.1 (ENSPNYG00000016267)	smyd1b (ENSPNYG00000016225)	LZTS3 (ENSPNYG00000016182)	ubox5 (ENSPNYG00000016151)	avp (ENSPNYG00000016008)	ENSPNYG00000015973	ENSPNYG00000015968	ENSPNYG00000015963	ENSPNYG00000015930	znf367 (ENSPNYG00000015886)	zgc:103482 (ENSPNYG00000015870) ##22	ENSPNYG00000015842	PRXL2C (ENSPNYG00000015818)	FBXL17 (ENSPNYG00000015789)	EFNA5 (ENSPNYG00000015764)	gadd45ga (ENSPNYG00000015744) ##21	ENSPNYG00000015728	ENSPNYG00000015708	znf131 (ENSPNYG00000015689)	SELENOP (ENSPNYG00000015667)	ghra (ENSPNYG00000015648)	FBXO4 (ENSPNYG00000015632)	rimoc1 (ENSPNYG00000015614)	oxct1a (ENSPNYG00000015571)	plcxd3 (ENSPNYG00000015551)	ENSPNYG00000015517
Burton s mouthbrooder	MODERN SPECIES	296	LOXHD1 (ENSHBUG00000003300)	ptger4a (ENSHBUG00000003310)	mrps27 (ENSHBUG00000003318)	ZNF366 (ENSHBUG00000003353)	oxt (ENSHBUG00000003374)	fabp1b.1 (ENSHBUG00000003377)	smyd1b (ENSHBUG00000003435)	LZTS3 (ENSHBUG00000003455)	ubox5 (ENSHBUG00000003469)	avp (ENSHBUG00000003494)	ENSHBUG00000000075	ENSHBUG00000003508	ENSHBUG00000003515	ENSHBUG00000003576	znf367 (ENSHBUG00000003602)	zgc:103482 (ENSHBUG00000003616) ##22	ENSHBUG00000003746	PRXL2C (ENSHBUG00000003784)	ENSHBUG00000003816	EFNA5 (ENSHBUG00000003831)	gadd45ga (ENSHBUG00000003848) ##21	ENSHBUG00000003875	ENSHBUG00000003908	znf131 (ENSHBUG00000003921)	SELENOP (ENSHBUG00000003962)	ghra (ENSHBUG00000003997)	FBXO4 (ENSHBUG00000004012)	rimoc1 (ENSHBUG00000004021)	oxct1a (ENSHBUG00000004046)	plcxd3 (ENSHBUG00000004074)	ENSHBUG00000004181
Midas cichlid	MODERN SPECIES	299	LOXHD1 (ENSACIG00000004579)	ptger4a (ENSACIG00000004565)	mrps27 (ENSACIG00000004470)	ZNF366 (ENSACIG00000004452)	oxt (ENSACIG00000004442)	fabp1b.1 (ENSACIG00000004432)	smyd1b (ENSACIG00000004413)	LZTS3 (ENSACIG00000004390)	ubox5 (ENSACIG00000004376)	avp (ENSACIG00000004197)	ENSACIG00000004178	ENSACIG00000004167	ENSACIG00000004138	znf367 (ENSACIG00000004120)	ENSACIG00000004114	ENSACIG00000004102 ##22	ENSACIG00000003976	PRXL2C (ENSACIG00000003954)	ENSACIG00000003928	FBXL17 (ENSACIG00000003893)	efna5b (ENSACIG00000003871)	gadd45ga (ENSACIG00000003856) ##21	creb3l3l (ENSACIG00000003835)	ENSACIG00000003817	znf131 (ENSACIG00000003694)	SELENOP (ENSACIG00000003662)	ghra (ENSACIG00000003633)	FBXO4 (ENSACIG00000003604)	rimoc1 (ENSACIG00000003580)	oxct1a (ENSACIG00000003552)	plcxd3 (ENSACIG00000003542)
Percomorphaceae_C	ANCESTRAL SPECIES	7	ENSGT00940000156997.a	ENSGT00390000018830.a.a.b	ENSGT01050000244902.a.a.a.a.a.b	ENSGT00390000007246	ENSGT00940000155498	ENSGT00390000004511.c.b	ENSGT00940000155135	ENSGT00940000156114.d	ENSGT00440000033609.x	ENSGT00940000154078.b.b	ENSGT00510000049555	ENSGT00390000004511.c.a	ENSGT01030000234769	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00940000168987	ENSGT00940000155899.f	ENSGT00510000048363	ENSGT00940000156973	ENSGT00940000157299.c	ENSGT00950000182964.a.b.a.a.a ##21	ENSGT00940000160343	ENSGT00940000165543	ENSGT00940000154668	ENSGT00510000049326.b.b	ENSGT00940000165107.B	ENSGT00390000014416	ENSGT00390000011383	ENSGT00390000009130.b.d.a
Eupercaria	ANCESTRAL SPECIES	5	ENSGT00940000156997.a	ENSGT00390000018830.a.a.b	ENSGT01050000244902.a.a.a.a.a.b	ENSGT00390000007246	ENSGT00940000155498	ENSGT00390000004511.c.b	ENSGT00940000155135	ENSGT00940000156114.d	ENSGT00440000033609.x	ENSGT00940000154078.b.b	ENSGT00510000049555	ENSGT00390000004511.c.a	ENSGT01030000234769	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000156973	ENSGT00940000157299.c	ENSGT00950000182964.a.b.a.a.a ##21	ENSGT00940000160343	ENSGT00940000165543	ENSGT00940000154668	ENSGT00510000049326.b.b	ENSGT00940000165107.B	ENSGT00390000014416	ENSGT00390000011383	ENSGT00390000009130.b.d.a	ENSGT00940000158747	ENSGT00940000156804.a
Eupecaria_A	ANCESTRAL SPECIES	6	ENSGT00940000156997.a	ENSGT00390000018830.a.a.b	ENSGT01050000244902.a.a.a.a.a.b	ENSGT00390000007246	ENSGT00940000155498	ENSGT00390000004511.c.b	ENSGT00940000155135	ENSGT00940000156114.d	ENSGT00440000033609.x	ENSGT00940000154078.b.b	ENSGT00510000049555	ENSGT00390000004511.c.a	ENSGT01030000234769	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000156973	ENSGT00940000157299.c	ENSGT00950000182964.a.b.a.a.a ##21	ENSGT00940000160343	ENSGT00940000165543	ENSGT00940000154668	ENSGT00510000049326.b.b	ENSGT00940000165107.B	ENSGT00390000014416	ENSGT00390000011383	ENSGT00390000009130.b.d.a	ENSGT00940000158747	ENSGT00940000156804.a
Eupecaria_B	ANCESTRAL SPECIES	6	ENSGT00940000156997.a	ENSGT00390000018830.a.a.b	ENSGT01050000244902.a.a.a.a.a.b	ENSGT00390000007246	ENSGT00940000155498	ENSGT00390000004511.c.b	ENSGT00940000155135	ENSGT00940000156114.d	ENSGT00440000033609.x	ENSGT00940000154078.b.b	ENSGT00510000049555	ENSGT00390000004511.c.a	ENSGT01030000234769	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000156973	ENSGT00940000157299.c	ENSGT00950000182964.a.b.a.a.a ##21	ENSGT00940000160343	ENSGT00940000165543	ENSGT00940000154668	ENSGT00510000049326.b.b	ENSGT00940000165107.B	ENSGT00390000014416	ENSGT00390000011383	ENSGT00390000009130.b.d.a	ENSGT00940000158747	ENSGT00940000156804.a
Perciformes	ANCESTRAL SPECIES	6	ENSGT00940000156997.a	ENSGT00390000018830.a.a.b	ENSGT01050000244902.a.a.a.a.a.b	ENSGT00390000007246	ENSGT00940000155498	ENSGT00390000004511.c.b	ENSGT00940000155135	ENSGT00940000156114.d	ENSGT00440000033609.x	ENSGT00940000154078.b.b	ENSGT00510000049555	ENSGT00390000004511.c.a	ENSGT01030000234769	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00940000168987	ENSGT00940000155899.f	ENSGT00510000048363	ENSGT00940000156973	ENSGT00940000157299.c	ENSGT00950000182964.a.b.a.a.a ##21	ENSGT00940000160343	ENSGT00940000165543	ENSGT00940000154668	ENSGT00510000049326.b.b	ENSGT00940000165107.B	ENSGT00390000014416	ENSGT00390000011383	ENSGT00390000009130.b.d.a
Perciformes_a	ANCESTRAL SPECIES	4	ENSGT00940000156997.a	ENSGT00390000018830.a.a.b	ENSGT01050000244902.a.a.a.a.a.b	ENSGT00390000007246	ENSGT00940000155498	ENSGT00390000004511.c.b	ENSGT00940000155135	ENSGT00940000156114.d	ENSGT00440000033609.x	ENSGT00940000154078.b.b	ENSGT00510000049555	ENSGT00390000004511.c.a	ENSGT01030000234769	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155899.f	ENSGT00510000048363	ENSGT00940000156973	ENSGT00940000157299.c	ENSGT00950000182964.a.b.a.a.a ##21	ENSGT00940000160343	ENSGT00940000165543	ENSGT00940000154668	ENSGT00510000049326.b.b	ENSGT00940000165107.B	ENSGT00390000014416	ENSGT00390000011383	ENSGT00390000009130.b.d.a	ENSGT00940000158747	ENSGT00940000156804.a
Channel bull blenny	MODERN SPECIES	23	atp5fa1 (ENSCGOG00000021955)	RNF165 (ENSCGOG00000021937)	LOXHD1 (ENSCGOG00000021928)	ptger4a (ENSCGOG00000021925)	mrps27 (ENSCGOG00000021924)	ZNF366 (ENSCGOG00000021923)	fabp1b.1 (ENSCGOG00000021911)	smyd1b (ENSCGOG00000021884)	sprb (ENSCGOG00000021872)	LZTS3 (ENSCGOG00000021869)	ubox5 (ENSCGOG00000021868)	oxt (ENSCGOG00000021849)	ENSCGOG00000021837	ENSCGOG00000021781	znf367 (ENSCGOG00000021779)	zgc:103482 (ENSCGOG00000021778) ##22	ENSCGOG00000021770	PRXL2C (ENSCGOG00000021752)	FBXL17 (ENSCGOG00000021750)	EFNA5 (ENSCGOG00000021747)	gadd45ga (ENSCGOG00000021742) ##21	creb3l3l (ENSCGOG00000021739)	ENSCGOG00000021736	znf131 (ENSCGOG00000021734)	ENSCGOG00000021731	ghra (ENSCGOG00000021694)	FBXO4 (ENSCGOG00000021692)	rimoc1 (ENSCGOG00000021691)	oxct1a (ENSCGOG00000020720)	plcxd3 (ENSCGOG00000020667)	ENSCGOG00000020505
Cottioidei	ANCESTRAL SPECIES	11	ENSGT00940000156997.a	ENSGT00390000018830.a.a.b	ENSGT01050000244902.a.a.a.a.a.b	ENSGT00390000007246	ENSGT00940000155498	ENSGT00390000004511.c.b	ENSGT00940000155135	ENSGT00940000156114.d	ENSGT00440000033609.x	ENSGT00940000154078.b.b	ENSGT00510000049555	ENSGT00390000004511.c.a	ENSGT01030000234769	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000156973	ENSGT00940000157299.c	ENSGT00950000182964.a.b.a.a.a ##21	ENSGT00940000160343	ENSGT00940000165543	ENSGT00940000154668	ENSGT00510000049326.b.b	ENSGT00940000165107.B	ENSGT00390000014416	ENSGT00390000011383	ENSGT00390000009130.b.d.a	ENSGT00940000158747	ENSGT00940000156804.a
Stickleback	MODERN SPECIES	12	RNF165 (ENSGACG00000006513)	LOXHD1 (ENSGACG00000006524)	ptger4a (ENSGACG00000006542)	mrps27 (ENSGACG00000006548)	ZNF366 (ENSGACG00000006566)	oxt (ENSGACG00000006569)	fabp1b.1 (ENSGACG00000006574)	smyd1b (ENSGACG00000006585)	sprb (ENSGACG00000006643)	LZTS3 (ENSGACG00000006653)	ubox5 (ENSGACG00000006662)	avp (ENSGACG00000006670)	ENSGACG00000006689	ENSGACG00000006692	znf367 (ENSGACG00000006715)	zgc:103482 (ENSGACG00000006722) ##22	cdc14b (ENSGACG00000006728)	PRXL2C (ENSGACG00000006769)	ENSGACG00000006788	efna5b (ENSGACG00000006791)	gadd45ga (ENSGACG00000006793) ##21	creb3l3l (ENSGACG00000006815)	ENSGACG00000006821	znf131 (ENSGACG00000006824)	ENSGACG00000006838	ghra (ENSGACG00000006842)	FBXO4 (ENSGACG00000006857)	rimoc1 (ENSGACG00000006860)	oxct1a (ENSGACG00000006876)	plcxd3 (ENSGACG00000006892)	ENSGACG00000006905
Eupecaria_C	ANCESTRAL SPECIES	3	ENSGT00940000156997.a	ENSGT00390000018830.a.a.b	ENSGT01050000244902.a.a.a.a.a.b	ENSGT00390000007246	ENSGT00940000155498	ENSGT00390000004511.c.b	ENSGT00940000155135	ENSGT00940000156114.d	ENSGT00440000033609.x	ENSGT00940000154078.b.b	ENSGT00510000049555	ENSGT00390000004511.c.a	ENSGT01030000234769	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000156973	ENSGT00940000157299.c	ENSGT00950000182964.a.b.a.a.a ##21	ENSGT00940000160343	ENSGT00940000165543	ENSGT00940000154668	ENSGT00510000049326.b.b	ENSGT00940000165107.B	ENSGT00390000014416	ENSGT00390000011383	ENSGT00390000009130.b.d.a	ENSGT00940000158747	ENSGT00940000156804.a
Gilthead seabream	MODERN SPECIES	19	atp5fa1 (ENSSAUG00010008214)	RNF165 (ENSSAUG00010008230)	LOXHD1 (ENSSAUG00010008239)	ptger4a (ENSSAUG00010008247)	mrps27 (ENSSAUG00010008248)	ZNF366 (ENSSAUG00010008255)	pro-VT (ENSSAUG00010008261)	fabp1b.1 (ENSSAUG00010008265)	smyd1b (ENSSAUG00010008270)	sprb (ENSSAUG00010008326)	LZTS3 (ENSSAUG00010008329)	ubox5 (ENSSAUG00010008334)	ENSSAUG00010008338	ENSSAUG00010008341	znf367 (ENSSAUG00010008343)	HABP4 (ENSSAUG00010008344) ##22	cdc14b (ENSSAUG00010008349)	PRXL2C (ENSSAUG00010008407)	ENSSAUG00010008409	EFNA5 (ENSSAUG00010008415)	gadd45ga (ENSSAUG00010008420) ##21	creb3l3l (ENSSAUG00010008428)	ENSSAUG00010008439	znf131 (ENSSAUG00010008465)	ENSSAUG00010008470	ghra (ENSSAUG00010008479)	ENSSAUG00010009180	FBXO4 (ENSSAUG00010009181)	rimoc1 (ENSSAUG00010009182)	oxct1a (ENSSAUG00010009214)	plcxd3 (ENSSAUG00010009344)
Ballan wrasse	MODERN SPECIES	32	atp5fa1 (ENSLBEG00000017946)	RNF165 (ENSLBEG00000017982)	LOXHD1 (ENSLBEG00000018152)	ptger4a (ENSLBEG00000018364)	mrps27 (ENSLBEG00000018377)	ZNF366 (ENSLBEG00000018407)	oxt (ENSLBEG00000018444)	fabp1b.1 (ENSLBEG00000018464)	smyd1b (ENSLBEG00000018484)	LZTS3 (ENSLBEG00000018504)	ubox5 (ENSLBEG00000018534)	avp (ENSLBEG00000018613)	ENSLBEG00000018867	ENSLBEG00000018885	znf367 (ENSLBEG00000018925)	ENSLBEG00000018951 ##22	ENSLBEG00000018977	PRXL2C (ENSLBEG00000019044)	FBXL17 (ENSLBEG00000019061)	ENSLBEG00000019081	ENSLBEG00000019095	myoz2a (ENSLBEG00000019146)	ENSLBEG00000019292	sec24d (ENSLBEG00000019311)	KCNIP4 (ENSLBEG00000019403)	ADGRA3 (ENSLBEG00000019470)	gba3 (ENSLBEG00000019541)	PPARGC1A (ENSLBEG00000019562)	ENSLBEG00000019620	ccdc149a (ENSLBEG00000019664)	ENSLBEG00000019708
Tetraodontidae	ANCESTRAL SPECIES	341																ENSGT00520000055591.b ##22	ENSGT00940000155950
Tetraodon	MODERN SPECIES	3	atp5fa1 (ENSTNIG00000016687)	RNF165 (ENSTNIG00000016686)	LOXHD1 (ENSTNIG00000016685)	ptger4a (ENSTNIG00000016684)	mrps27 (ENSTNIG00000016683)	ZNF366 (ENSTNIG00000016682)	oxt (ENSTNIG00000016681)	fabp1b.1 (ENSTNIG00000016680)	smyd1b (ENSTNIG00000016679)	LZTS3 (ENSTNIG00000016678)	ubox5 (ENSTNIG00000016677)	avp (ENSTNIG00000016676)	ENSTNIG00000016675	znf367 (ENSTNIG00000016674)	ENSTNIG00000000691	zgc:103482 (ENSTNIG00000016673) ##22	cdc14b (ENSTNIG00000016672)	PRXL2C (ENSTNIG00000016671)	ENSTNIG00000016670	efna5b (ENSTNIG00000016669)	gadd45ga (ENSTNIG00000016668) ##21	creb3l3l (ENSTNIG00000016667)	ENSTNIG00000016666	znf131 (ENSTNIG00000016665)	SELENOP (ENSTNIG00000016664)	ghra (ENSTNIG00000001788)	ENSTNIG00000006526	FBXO4 (ENSTNIG00000004129)	rimoc1 (ENSTNIG00000004130)	oxct1a (ENSTNIG00000005133)	plcxd3 (ENSTNIG00000005138)
Percomorphaceae_D	ANCESTRAL SPECIES	7	ENSGT00940000156997.a	ENSGT00390000018830.a.a.b	ENSGT01050000244902.a.a.a.a.a.b	ENSGT00390000007246	ENSGT00940000155498	ENSGT00390000004511.c.b	ENSGT00940000155135	ENSGT00940000156114.d	ENSGT00440000033609.x	ENSGT00940000154078.b.b	ENSGT00510000049555	ENSGT00390000004511.c.a	ENSGT01030000234769	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00940000168987	ENSGT00940000155899.f	ENSGT00510000048363	ENSGT00940000156973	ENSGT00940000157299.c	ENSGT00950000182964.a.b.a.a.a ##21	ENSGT00940000160343	ENSGT00940000165543	ENSGT00940000154668	ENSGT00510000049326.b.b	ENSGT00940000165107.B	ENSGT00390000014416	ENSGT00390000011383	ENSGT00390000009130.b.d.a
Anabantaria	ANCESTRAL SPECIES	4	ENSGT00940000156997.a	ENSGT00390000018830.a.a.b	ENSGT01050000244902.a.a.a.a.a.b	ENSGT00390000007246	ENSGT00940000155498	ENSGT00390000004511.c.b	ENSGT00940000155135	ENSGT00940000156114.d	ENSGT00440000033609.x	ENSGT00940000154078.b.b	ENSGT00510000049555	ENSGT00390000004511.c.a	ENSGT01030000234769	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000168987	ENSGT00940000155899.f	ENSGT00510000048363	ENSGT00940000156973	ENSGT00940000157299.c	ENSGT00950000182964.a.b.a.a.a ##21	ENSGT00940000160343	ENSGT00940000165543	ENSGT00940000154668	ENSGT00510000049326.b.b	ENSGT00940000165107.B	ENSGT00390000014416	ENSGT00390000011383	ENSGT00390000009130.b.d.a	ENSGT00940000158747
Anabantoidei	ANCESTRAL SPECIES	4	ENSGT00940000156997.a	ENSGT00390000018830.a.a.b	ENSGT01050000244902.a.a.a.a.a.b	ENSGT00390000007246	ENSGT00940000155498	ENSGT00390000004511.c.b	ENSGT00940000155135	ENSGT00940000156114.d	ENSGT00440000033609.x	ENSGT00940000154078.b.b	ENSGT00510000049555	ENSGT00390000004511.c.a	ENSGT01030000234769	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155899.f	ENSGT00510000048363	ENSGT00940000156973	ENSGT00940000157299.c	ENSGT00950000182964.a.b.a.a.a ##21	ENSGT00940000160343	ENSGT00940000165543	ENSGT00940000154668	ENSGT00510000049326.b.b	ENSGT00940000165107.B	ENSGT00390000014416	ENSGT00390000011383	ENSGT00390000009130.b.d.a	ENSGT00940000158747	ENSGT00940000156804.a
Climbing perch	MODERN SPECIES	22	ENSATEG00000026169	ENSATEG00000018153	ptger4a (ENSATEG00000027727)	mrps27 (ENSATEG00000018107)	ENSATEG00000018054	ENSATEG00000018040	fabp1b.1 (ENSATEG00000017965)	smyd1b (ENSATEG00000017916)	ENSATEG00000017858	ENSATEG00000028654	ubox5 (ENSATEG00000017763)	avp (ENSATEG00000017510)	ENSATEG00000017495	ENSATEG00000029574	znf367 (ENSATEG00000017464)	ENSATEG00000017443 ##22	ENSATEG00000017399	PRXL2C (ENSATEG00000017336)	ENSATEG00000017318	ENSATEG00000029958	gadd45ga (ENSATEG00000025385) ##21	ENSATEG00000017261	ENSATEG00000017220	znf131 (ENSATEG00000017187)	ENSATEG00000017163	ghra (ENSATEG00000017139)	FBXO4 (ENSATEG00000017130)	C5orf51 (ENSATEG00000029966)	oxct1a (ENSATEG00000017055)	plcxd3 (ENSATEG00000025724)	ENSATEG00000017015
Carangaria	ANCESTRAL SPECIES	75																ENSGT00520000055591.b ##22	ENSGT00940000155950
Pleuronectoidei	ANCESTRAL SPECIES	162																ENSGT00520000055591.b ##22	ENSGT00940000155950
Tongue sole	MODERN SPECIES	397	ENSCSEG00000011270	ENSCSEG00000011255	ENSCSEG00000011246	ENSCSEG00000011239	zfr (ENSCSEG00000011169)	ENSCSEG00000011154	npr3 (ENSCSEG00000011131)	ENSCSEG00000011126	tet3 (ENSCSEG00000011097)	ENSCSEG00000011094	ap3m2 (ENSCSEG00000011074)	rpl35 (ENSCSEG00000011059)	PPP6C (ENSCSEG00000011041)	ENSCSEG00000011031	ENSCSEG00000011020	ENSCSEG00000011016 ##22	ENSCSEG00000011012	ENSCSEG00000011002	ENSCSEG00000011001	arhgap25 (ENSCSEG00000010972)	bmp10 (ENSCSEG00000010960)	zgc:65851 (ENSCSEG00000010950)	ENSCSEG00000010933	specc1la (ENSCSEG00000010920)	ENSCSEG00000010899	PPP1CA (ENSCSEG00000010867)	pptc7a (ENSCSEG00000010858)	ENSCSEG00000010851	ENSCSEG00000010844	ANAPC7 (ENSCSEG00000010836)	ENSCSEG00000010825
Protacanthopterygii	ANCESTRAL SPECIES	102	ENSGT00940000156997.a	ENSGT00390000018830.a.a	ENSGT00940000165146	ENSGT00390000005254.c.b	ENSGT01050000244902.a.a.a.a.a.b	ENSGT00390000007246	ENSGT00940000155498	ENSGT00390000004511.c.b.c	ENSGT00940000156114.d	ENSGT00940000154078.b.b	ENSGT00510000049555	ENSGT00390000004511.c.a.a	ENSGT01010000222762.a	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000157299.d	ENSGT00950000182964.a.b.a.a.b.e ##21	ENSGT00950000182964.a.b.a.a.b.f ##21	ENSGT00940000155899.f	ENSGT00510000048363	ENSGT00940000156973	ENSGT00940000157299.c	ENSGT00950000182964.a.b.a.a.a ##21	ENSGT00940000160343	ENSGT00940000165543	ENSGT00940000154668	ENSGT00510000049326.b.b	ENSGT00940000165107.B	ENSGT00390000014416	ENSGT00390000011383
Northern pike	MODERN SPECIES	13	TPRN (ENSELUG00000012735)	ssna1 (ENSELUG00000034545)	anapc2 (ENSELUG00000012675)	ENSELUG00000012622	ENSELUG00000012560	pmchl (ENSELUG00000012551)	ccnb1 (ENSELUG00000012535)	slc30a5 (ENSELUG00000012498)	TMC2 (ENSELUG00000012412)	zfand5b (ENSELUG00000012301)	ENSELUG00000012280	MAMDC2 (ENSELUG00000012261)	ENSELUG00000012214	tjp2a (ENSELUG00000012138)	pip5k1ba (ENSELUG00000011993)	zgc:103482 (ENSELUG00000011872) ##22	EFNA5 (ENSELUG00000034260)	GADD45G (ENSELUG00000011831) ##21	gadd45gb.1 (ENSELUG00000011823) ##21	ENSELUG00000011802	ENSELUG00000028900	ghrb (ENSELUG00000011769)	c7b (ENSELUG00000011733)	c6 (ENSELUG00000011662)	rnf180b (ENSELUG00000011598)	ENSELUG00000011574	ndr1 (ENSELUG00000011567)	ANK1 (ENSELUG00000011547)	ftsj1 (ENSELUG00000011483)	NEFM (ENSELUG00000011468)	neflb (ENSELUG00000011459)
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	79	ENSGT00530000064035.b.i	ENSGT00940000164889.c	ENSGT00390000016127.i	ENSGT00940000156223.r.b	ENSGT00640000091617	ENSGT00390000004984.a.c	ENSGT00940000154586.ac.a	ENSGT00940000164966.b.a.d	ENSGT00990000203931	ENSGT00550000074816.B.e	ENSGT00940000156117.e.b	ENSGT00940000156820.a.b.o	ENSGT00940000158634.b.i	ENSGT00940000156639.d.k	ENSGT00940000167469.c.b	ENSGT00520000055591.b.c.a ##22	ENSGT00940000157299.d.c	ENSGT00950000182964.a.b.a.a.b.e.c ##21	ENSGT00950000182964.a.b.a.a.b.f.c ##21	ENSGT00940000166638.b.b	ENSGT00390000010075	ENSGT00940000165107.A.b	ENSGT00940000156804.b	ENSGT00940000153725.b.c	ENSGT00950000182909.a.e	ENSGT00940000154484.B.a.a	ENSGT00940000163919.b.c	ENSGT00940000155760.t.b.e
Salmoninae_a	ANCESTRAL SPECIES	7	ENSGT00530000064035.b.i	ENSGT00940000164889.c	ENSGT00390000016127.i	ENSGT00940000156223.r.b	ENSGT00640000091617	ENSGT00390000004984.a.c	ENSGT00940000154586.ac.a	ENSGT00940000164966.b.a.d	ENSGT00990000203931	ENSGT00550000074816.B.e	ENSGT00940000156117.e.b	ENSGT00940000156820.a.b.o	ENSGT00940000158634.b.i	ENSGT00940000156639.d.k	ENSGT00940000167469.c.b	ENSGT00520000055591.b.c.a ##22	ENSGT00940000157299.d.c	ENSGT00950000182964.a.b.a.a.b.e.c ##21	ENSGT00950000182964.a.b.a.a.b.f.c ##21	ENSGT00940000166638.b.b	ENSGT00390000010075	ENSGT00940000165107.A.b	ENSGT00940000156804.b	ENSGT00940000153725.b.c	ENSGT00950000182909.a.e	ENSGT00940000154484.B.a.a	ENSGT00940000163919.b.c	ENSGT00940000155760.t.b.e	ENSGT00730000111146.e	ENSGT00940000161685.A.a.b	ENSGT00940000156208.i.c
Oncorhynchus	ANCESTRAL SPECIES	19	ENSGT00390000006998.h.a	ENSGT00510000049510.a	ENSGT00530000064035.b.i	ENSGT00940000164889.c	ENSGT00390000016127.i	ENSGT00940000156223.r.b	ENSGT00640000091617	ENSGT00390000004984.a.c	ENSGT00940000154586.ac.a	ENSGT00940000164966.b.a.d	ENSGT00550000074816.B.e	ENSGT00940000156117.e.b	ENSGT00940000156820.a.b.o	ENSGT00940000158634.b.i	ENSGT00940000156639.d.k	ENSGT00520000055591.b.c.a ##22	ENSGT00940000157299.d.c	ENSGT00950000182964.a.b.a.a.b.e.c ##21	ENSGT00950000182964.a.b.a.a.b.f.c ##21	ENSGT00940000166638.b.b	ENSGT00390000010075	ENSGT00940000165107.A.b.a	ENSGT00940000156804.b	ENSGT00940000153725.b.c	ENSGT00950000182909.a.e	ENSGT00940000154484.B.a.a	ENSGT00940000163919.b.c	ENSGT00940000155760.t.b.e	ENSGT00730000111146.e	ENSGT00940000161685.A.a.b	ENSGT00940000156208.i.c
Oncorhynchus_a	ANCESTRAL SPECIES	12	ENSGT00510000049510.a	ENSGT00530000064035.b.i	ENSGT00940000164889.c	ENSGT00390000016127.i	ENSGT00940000156223.r.b	ENSGT00640000091617	ENSGT00390000004984.a.c	ENSGT00940000154586.ac.a	ENSGT00940000164966.b.a.d	ENSGT00550000074816.B.e	ENSGT00940000156117.e.b	ENSGT00940000156820.a.b.o	ENSGT00940000158634.b.i	ENSGT00940000156639.d.k	ENSGT01100000263505.b.b.a.b.a.a.a.b.b.b.b.b.a	ENSGT00520000055591.b.c.a ##22	ENSGT00940000157299.d.c	ENSGT00950000182964.a.b.a.a.b.e.c ##21	ENSGT00950000182964.a.b.a.a.b.f.c ##21	ENSGT00940000166638.b.b	ENSGT00390000010075	ENSGT00940000165107.A.b.a	ENSGT00940000156804.b	ENSGT00940000153725.b.c	ENSGT00950000182909.a.e	ENSGT00940000154484.B.a.a	ENSGT00940000163919.b.c	ENSGT00940000155760.t.b.e	ENSGT00730000111146.e	ENSGT00940000161685.A.a.b	ENSGT00940000156208.i.c
Coho salmon	MODERN SPECIES	15	anapc2 (ENSOKIG00005006691)	ENSOKIG00005006884	ENSOKIG00005007183	pmchl (ENSOKIG00005007192)	ccnb1 (ENSOKIG00005007201)	zfand5b (ENSOKIG00005007245)	smc5 (ENSOKIG00005007310)	MAMDC2 (ENSOKIG00005007743)	ENSOKIG00005007817	tjp2a (ENSOKIG00005008023)	ENSOKIG00005010549	ENSOKIG00005010936	ENSOKIG00005010943	ENSOKIG00005010949	ENSOKIG00005010966	zgc:103482 (ENSOKIG00005010977) ##22	EFNA5 (ENSOKIG00005011006)	GADD45G (ENSOKIG00005011014) ##21	gadd45gb.1 (ENSOKIG00005011016) ##21	ENSOKIG00005011027	ENSOKIG00005011035	ghrb (ENSOKIG00005011052)	c7b (ENSOKIG00005011183)	rgs7bpb (ENSOKIG00005012351)	rnf180b (ENSOKIG00005012363)	htr1ab (ENSOKIG00005012371)	ENSOKIG00005012377	ANK1 (ENSOKIG00005012537)	ftsj1 (ENSOKIG00005015471)	ENSOKIG00005015502	NEFL (ENSOKIG00005015557)
Chinook salmon	MODERN SPECIES	12	tmem203 (ENSOTSG00005009779)	TPRN (ENSOTSG00005009778)	ssna1 (ENSOTSG00005009777)	anapc2 (ENSOTSG00005009768)	ENSOTSG00005009723	ENSOTSG00005009712	pmchl (ENSOTSG00005009708)	ccnb1 (ENSOTSG00005009707)	zfand5b (ENSOTSG00005009705)	smc5 (ENSOTSG00005009517)	MAMDC2 (ENSOTSG00005009507)	ENSOTSG00005009506	tjp2a (ENSOTSG00005007559)	ENSOTSG00005007549	ENSOTSG00005007545	zgc:103482 (ENSOTSG00005007543) ##22	EFNA5 (ENSOTSG00005007541)	GADD45G (ENSOTSG00005007539) ##21	gadd45gb.1 (ENSOTSG00005007537) ##21	ENSOTSG00005007535	ENSOTSG00005007533	ghrb (ENSOTSG00005007531)	c7b (ENSOTSG00005007485)	rgs7bpb (ENSOTSG00005007483)	rnf180b (ENSOTSG00005007481)	htr1ab (ENSOTSG00005007477)	ENSOTSG00005007476	ANK1 (ENSOTSG00005002114)	ftsj1 (ENSOTSG00005002050)	nefma (ENSOTSG00005002034)	NEFL (ENSOTSG00005001789)
Rainbow trout	MODERN SPECIES	26	ssna1 (ENSOMYG00000041846)	anapc2 (ENSOMYG00000041800)	ENSOMYG00000040077	ENSOMYG00000039632	pmchl (ENSOMYG00000039618)	ccnb1 (ENSOMYG00000039583)	ENSOMYG00000039541	smc5 (ENSOMYG00000038455)	ENSOMYG00000038147	ENSOMYG00000037933	tjp2a (ENSOMYG00000034926)	ENSOMYG00000034582	ENSOMYG00000050792	ENSOMYG00000054636	zo6 (ENSOMYG00000067115)	zgc:103482 (ENSOMYG00000034562) ##22	ENSOMYG00000034526	ENSOMYG00000034523 ##21	gadd45gb.1 (ENSOMYG00000034440) ##21	ENSOMYG00000034483	ghr1 (ENSOMYG00000034417)	c7b (ENSOMYG00000032326)	rgs7bpb (ENSOMYG00000032081)	rnf180b (ENSOMYG00000032072)	htr1ab (ENSOMYG00000032055)	ndr1 (ENSOMYG00000032048)	ENSOMYG00000064670	ENSOMYG00000030029	ftsj1 (ENSOMYG00000028976)	ENSOMYG00000069784	ENSOMYG00000028862
Salmo	ANCESTRAL SPECIES		ENSGT00530000064035.b.i	ENSGT00940000164889.c	ENSGT00390000016127.i	ENSGT00940000156223.r.b	ENSGT00640000091617	ENSGT00390000004984.a.c	ENSGT00940000154586.ac.a	ENSGT00940000164966.b.a.d	ENSGT00990000203931	ENSGT00550000074816.B.e	ENSGT00940000156117.e.b	ENSGT00940000156820.a.b.o	ENSGT00940000158634.b.i	ENSGT00940000156639.d.k	ENSGT00940000167469.c.b	ENSGT00520000055591.b.c.a ##22	ENSGT00940000157299.d.c	ENSGT00950000182964.a.b.a.a.b.e.c ##21	ENSGT00950000182964.a.b.a.a.b.f.c ##21	ENSGT00940000166638.a	ENSGT00390000010075	ENSGT00940000165107.A.b	ENSGT00990000213146	ENSGT00940000156804.b	ENSGT00940000153725.b.c	ENSGT00950000182909.a.e	ENSGT00940000154484.B.a.a	ENSGT00940000163919.b.c	ENSGT00940000159932.b	ENSGT00940000155760.t.b.e	ENSGT00730000111146.e
Atlantic salmon	MODERN SPECIES		alad (ENSSSAG00000046917)	ENSSSAG00000047271	ssna1 (ENSSSAG00000047279)	anapc2 (ENSSSAG00000083062)	ENSSSAG00000047353	ENSSSAG00000085958	pmchl (ENSSSAG00000054255)	ccnb1 (ENSSSAG00000054265)	smc5 (ENSSSAG00000054392)	ENSSSAG00000063659	ENSSSAG00000063697	tjp2a (ENSSSAG00000063980)	ENSSSAG00000098762	ENSSSAG00000070301	ENSSSAG00000070287	HABP4 (ENSSSAG00000070313) ##22	ENSSSAG00000093227	ENSSSAG00000070320 ##21	gadd45gb.1 (ENSSSAG00000070322) ##21	ENSSSAG00000098302	ghrb (ENSSSAG00000070335)	ENSSSAG00000070863	ENSSSAG00000070413	rnf180b (ENSSSAG00000099351)	htr1ab (ENSSSAG00000070900)	ENSSSAG00000070948	ftsj1 (ENSSSAG00000082019)	ENSSSAG00000111499	ENSSSAG00000071661	ENSSSAG00000093362	ENSSSAG00000092291
River trout	MODERN SPECIES	15	ssna1 (ENSSTUG00000009983)	anapc2 (ENSSTUG00000009998)	ENSSTUG00000010074	ENSSTUG00000010791	pmchl (ENSSTUG00000010796)	ccnb1 (ENSSTUG00000010799)	zfand5b (ENSSTUG00000010824)	ENSSTUG00000010890	ENSSTUG00000012932	ENSSTUG00000013053	tjp2a (ENSSTUG00000013298)	ENSSTUG00000016496	pip5k1ba (ENSSTUG00000016507)	ENSSTUG00000016580	ENSSTUG00000016584	zgc:103482 (ENSSTUG00000016587) ##22	EFNA5 (ENSSTUG00000016602)	GADD45G (ENSSTUG00000016609) ##21	gadd45gb.1 (ENSSTUG00000016615) ##21	ENSSTUG00000016631	ENSSTUG00000016642	ghrb (ENSSTUG00000016658)	ENSSTUG00000016685	c7b (ENSSTUG00000016707)	rgs7bpb (ENSSTUG00000016907)	rnf180b (ENSSTUG00000016963)	htr1ab (ENSSTUG00000016972)	ENSSTUG00000016975	eif4ebp1 (ENSSTUG00000016984)	ANK1 (ENSSTUG00000017006)	ftsj1 (ENSSTUG00000032190)
Huchen	MODERN SPECIES	538			ssna1 (ENSHHUG00000047057)	anapc2 (ENSHHUG00000047033)	ENSHHUG00000046891	ENSHHUG00000046883	pmchl (ENSHHUG00000046875)	ccnb1 (ENSHHUG00000046862)	zfand5b (ENSHHUG00000046852)	ENSHHUG00000046441	MAMDC2 (ENSHHUG00000046419)	ENSHHUG00000046382	tjp2a (ENSHHUG00000046245)	ENSHHUG00000046228	ENSHHUG00000046222	zgc:103482 (ENSHHUG00000046215) ##22	EFNA5 (ENSHHUG00000046211)	GADD45G (ENSHHUG00000046208) ##21	gadd45gb.1 (ENSHHUG00000046200) ##21	ENSHHUG00000046198	ENSHHUG00000046190	ghrb (ENSHHUG00000046164)	c7b (ENSHHUG00000046039)	rgs7bpb (ENSHHUG00000046027)	ENSHHUG00000046024	ENSHHUG00000046017	htr1ab (ENSHHUG00000046016)	ENSHHUG00000046014	ENSHHUG00000046012	ANK1 (ENSHHUG00000045846)	ftsj1 (ENSHHUG00000045829)
Salmoninae	ANCESTRAL SPECIES	84	ENSGT00510000049510.b	ENSGT00530000064035.b.j	ENSGT00940000164889.d	ENSGT00390000016127.j	ENSGT00940000156223.r.a	ENSGT00390000004984.a.d	ENSGT00940000154586.ac.b	ENSGT00940000155754	ENSGT00940000155221.gb	ENSGT01050000244942.b.a.b.e.b	ENSGT00940000164966.b.a.c	ENSGT00550000074816.B.f	ENSGT00940000156820.a.b.n	ENSGT00940000158634.b.j	ENSGT00940000156639.d.l	ENSGT00520000055591.b.c.b ##22	ENSGT00940000157299.d.d	ENSGT00950000182964.a.b.a.a.b.e.d ##21	ENSGT00950000182964.a.b.a.a.b.f.d ##21	ENSGT00940000166638.b.a	ENSGT00940000165107.A.a	ENSGT00390000009130.b.d.b	ENSGT00940000156814	ENSGT01010000222287.B.b.b.b	ENSGT00940000163919.b.d	ENSGT00940000159932.b	ENSGT00940000155760.t.b.f	ENSGT00730000111146.f	ENSGT00940000161685.A.a.a	ENSGT00940000156208.i.d	ENSGT00950000182926.b.c.i
Salmoninae_a	ANCESTRAL SPECIES	12	ENSGT00510000049510.b	ENSGT00530000064035.b.j	ENSGT00940000164889.d	ENSGT00390000016127.j	ENSGT00940000156223.r.a	ENSGT00390000004984.a.d	ENSGT00940000154586.ac.b	ENSGT00940000155754	ENSGT00940000155221.gb	ENSGT01050000244942.b.a.b.e.b	ENSGT00940000164966.b.a.c	ENSGT00550000074816.B.f	ENSGT00940000156820.a.b.n	ENSGT00940000158634.b.j	ENSGT00940000156639.d.l	ENSGT00520000055591.b.c.b ##22	ENSGT00940000157299.d.d	ENSGT00950000182964.a.b.a.a.b.e.d ##21	ENSGT00950000182964.a.b.a.a.b.f.d ##21	ENSGT00940000166638.b.a	ENSGT00940000165107.A.a	ENSGT00390000009130.b.d.b	ENSGT00940000156814	ENSGT01010000222287.B.b.b.b	ENSGT00940000163919.b.d	ENSGT00940000159932.b	ENSGT00940000155760.t.b.f	ENSGT00730000111146.f	ENSGT00940000161685.A.a.a	ENSGT00940000156208.i.d	ENSGT00950000182926.b.c.i
Oncorhynchus	ANCESTRAL SPECIES	18	ENSGT00390000006998.h.b	ENSGT00510000049510.b	ENSGT00530000064035.b.j	ENSGT00940000164889.d	ENSGT00390000016127.j	ENSGT00940000156223.r.a	ENSGT00390000004984.a.d	ENSGT00940000154586.ac.b	ENSGT00940000155754	ENSGT01050000244942.b.a.b.e.b	ENSGT00940000164966.b.a.c	ENSGT00550000074816.B.f	ENSGT00940000156820.a.b.n	ENSGT00940000158634.b.j	ENSGT00940000156639.d.l	ENSGT00520000055591.b.c.b ##22	ENSGT00940000157299.d.d	ENSGT00950000182964.a.b.a.a.b.e.d ##21	ENSGT00950000182964.a.b.a.a.b.f.d ##21	ENSGT00940000166638.b.a	ENSGT00940000165107.A.a	ENSGT00390000009130.b.d.b	ENSGT00940000156814	ENSGT01010000222287.B.b.b.b	ENSGT00940000163919.b.d	ENSGT00940000159932.b	ENSGT00940000155760.t.b.f	ENSGT00730000111146.f	ENSGT00940000161685.A.a.a	ENSGT00940000156208.i.d	ENSGT00950000182926.b.c.i
Rainbow trout	MODERN SPECIES	364	alad (ENSOMYG00000033316)	tmem203 (ENSOMYG00000033230)	ENSOMYG00000066224	ssna1 (ENSOMYG00000047734)	anapc2 (ENSOMYG00000047728)	ENSOMYG00000047680	pmchl (ENSOMYG00000047657)	ccnb1 (ENSOMYG00000047653)	slc30a5 (ENSOMYG00000047649)	ENSOMYG00000047640	ENSOMYG00000047634	ENSOMYG00000047630	ENSOMYG00000047627	tjp2a (ENSOMYG00000047617)	ENSOMYG00000047604	zgc:103482 (ENSOMYG00000047602) ##22	ENSOMYG00000047601	ENSOMYG00000047599 ##21	gadd45gb.1 (ENSOMYG00000047598) ##21	ENSOMYG00000047596	ghr (ENSOMYG00000047593)	oxct1b (ENSOMYG00000047505)	c6 (ENSOMYG00000047226)	ENSOMYG00000047161	ndr1 (ENSOMYG00000047159)	eif4ebp1 (ENSOMYG00000047155)	ENSOMYG00000047104	ftsj1 (ENSOMYG00000063167)	ENSOMYG00000047020	ENSOMYG00000047018	ENSOMYG00000066692
Oncorhynchus_a	ANCESTRAL SPECIES	20	ENSGT00390000006998.h.b	ENSGT00510000049510.b	ENSGT00530000064035.b.j	ENSGT00940000164889.d	ENSGT00390000016127.j	ENSGT00940000156223.r.a	ENSGT00390000004984.a.d	ENSGT00940000154586.ac.b	ENSGT00940000155754	ENSGT01050000244942.b.a.b.e.b	ENSGT00940000164966.b.a.c	ENSGT00550000074816.B.f	ENSGT00940000156820.a.b.n	ENSGT00940000158634.b.j	ENSGT00940000156639.d.l	ENSGT00520000055591.b.c.b ##22	ENSGT00940000157299.d.d	ENSGT00950000182964.a.b.a.a.b.e.d ##21	ENSGT00950000182964.a.b.a.a.b.f.d ##21	ENSGT00940000166638.b.a	ENSGT00940000165107.A.a	ENSGT00390000009130.b.d.b	ENSGT00940000156814	ENSGT01010000222287.B.b.b.b	ENSGT00940000163919.b.d	ENSGT00940000159932.b	ENSGT00940000155760.t.b.f	ENSGT00730000111146.f	ENSGT00940000161685.A.a.a	ENSGT00940000156208.i.d	ENSGT00950000182926.b.c.i
Coho salmon	MODERN SPECIES	21	alad (ENSOKIG00005025023)	tmem203 (ENSOKIG00005024984)	TPRN (ENSOKIG00005024969)	anapc2 (ENSOKIG00005024798)	ssna1 (ENSOKIG00005024773)	ENSOKIG00005023288	pmchl (ENSOKIG00005023158)	ccnb1 (ENSOKIG00005023090)	slc30a5 (ENSOKIG00005022883)	TMC2 (ENSOKIG00005022649)	ENSOKIG00005022574	ENSOKIG00005022497	ENSOKIG00005051005	tjp2a (ENSOKIG00005051004)	ENSOKIG00005051003	zgc:103482 (ENSOKIG00005051001) ##22	ENSOKIG00005051000	EFNA5 (ENSOKIG00005050999)	GADD45G (ENSOKIG00005050998) ##21	gadd45gb.1 (ENSOKIG00005050997) ##21	ENSOKIG00005050996	ghrb (ENSOKIG00005050995)	oxct1b (ENSOKIG00005050994)	c6 (ENSOKIG00005050993)	ENSOKIG00005050992	ndr1 (ENSOKIG00005050991)	ENSOKIG00005050990	ANK1 (ENSOKIG00005050989)	ftsj1 (ENSOKIG00005050986)	nefma (ENSOKIG00005050985)	neflb (ENSOKIG00005050984)
Chinook salmon	MODERN SPECIES	26	tmem203 (ENSOTSG00005014734)	TPRN (ENSOTSG00005014733)	anapc2 (ENSOTSG00005014707)	ssna1 (ENSOTSG00005014706)	ENSOTSG00005013166	pmchl (ENSOTSG00005013160)	ccnb1 (ENSOTSG00005013137)	slc30a5 (ENSOTSG00005013106)	ENSOTSG00005013102	TMC2 (ENSOTSG00005013101)	zfand5b (ENSOTSG00005013098)	smc5 (ENSOTSG00005012896)	ENSOTSG00005012894	tjp2a (ENSOTSG00005012743)	ENSOTSG00005012736	zgc:103482 (ENSOTSG00005012735) ##22	EFNA5 (ENSOTSG00005012734)	GADD45G (ENSOTSG00005012733) ##21	gadd45gb.1 (ENSOTSG00005012732) ##21	ENSOTSG00005012731	ghrb (ENSOTSG00005012466)	oxct1b (ENSOTSG00005009955)	c6 (ENSOTSG00005007733)	ENSOTSG00005007707	ndr1 (ENSOTSG00005007705)	eif4ebp1 (ENSOTSG00005007704)	ANK1 (ENSOTSG00005004812)	ftsj1 (ENSOTSG00005004765)	nefma (ENSOTSG00005004759)	neflb (ENSOTSG00005004757)	pgam2 (ENSOTSG00005004755)
Salmo	ANCESTRAL SPECIES	1	ENSGT00390000006998.h.b	ENSGT00510000049510.b	ENSGT00530000064035.b.j	ENSGT00940000164889.d	ENSGT00390000016127.j	ENSGT00940000156223.r.a	ENSGT00390000004984.a.d	ENSGT00940000154586.ac.b	ENSGT00940000155754	ENSGT00940000155221.gb	ENSGT01050000244942.b.a.b.e.b	ENSGT00940000164966.b.a.c	ENSGT00550000074816.B.f	ENSGT00940000156820.a.b.n	ENSGT00940000158634.b.j	ENSGT00520000055591.b.c.b ##22	ENSGT00940000157299.d.d	ENSGT00950000182964.a.b.a.a.b.e.d ##21	ENSGT00950000182964.a.b.a.a.b.f.d ##21	ENSGT00940000166638.b.a	ENSGT00940000165107.A.a	ENSGT00390000009130.b.d.b	ENSGT00940000156814	ENSGT01010000222287.B.b.b.b	ENSGT00940000163919.b.d	ENSGT00940000155760.t.b.f	ENSGT00730000111146.f	ENSGT00940000161685.A.a.a	ENSGT00940000156208.i.d	ENSGT00950000182926.b.c.i	ENSGT00940000164254.a.b.a
River trout	MODERN SPECIES	3	tmem203 (ENSSTUG00000040331)	TPRN (ENSSTUG00000040321)	ssna1 (ENSSTUG00000040314)	ENSSTUG00000040310	anapc2 (ENSSTUG00000040195)	ENSSTUG00000036872	pmchl (ENSSTUG00000036784)	ccnb1 (ENSSTUG00000036732)	slc30a5 (ENSSTUG00000036609)	ENSSTUG00000036558	TMC2 (ENSSTUG00000036445)	zfand5b (ENSSTUG00000036433)	smc5 (ENSSTUG00000036410)	ENSSTUG00000036079	tjp2a (ENSSTUG00000031734)	zgc:103482 (ENSSTUG00000031528) ##22	ENSSTUG00000031447	EFNA5 (ENSSTUG00000031423)	ENSSTUG00000031415	GADD45G (ENSSTUG00000031406) ##21	gadd45gb.1 (ENSSTUG00000031398) ##21	ENSSTUG00000031390	ghrb (ENSSTUG00000031364)	oxct1b (ENSSTUG00000027739)	c6 (ENSSTUG00000026741)	ENSSTUG00000026708	ENSSTUG00000026699	ndr1 (ENSSTUG00000026694)	ANK1 (ENSSTUG00000025834)	nefma (ENSSTUG00000025801)	neflb (ENSSTUG00000025796)
Huchen	MODERN SPECIES	591	ssna1 (ENSHHUG00000032852)	anapc2 (ENSHHUG00000032838)	ENSHHUG00000032731	pmchl (ENSHHUG00000032715)	ccnb1 (ENSHHUG00000032685)	slc30a5 (ENSHHUG00000032606)	ENSHHUG00000032595	TMC2 (ENSHHUG00000032571)	zfand5b (ENSHHUG00000032553)	ENSHHUG00000032547	ENSHHUG00000032538	smc5 (ENSHHUG00000032525)	ENSHHUG00000032519	tjp2a (ENSHHUG00000032496)	ENSHHUG00000032417	zgc:103482 (ENSHHUG00000032408) ##22	EFNA5 (ENSHHUG00000032407)	GADD45G (ENSHHUG00000032404) ##21	gadd45gb.1 (ENSHHUG00000032402) ##21	ENSHHUG00000032401	ghrb (ENSHHUG00000032389)	oxct1b (ENSHHUG00000032269)	c6 (ENSHHUG00000032101)	rgs7bpb (ENSHHUG00000032098)	ENSHHUG00000032089	ndr1 (ENSHHUG00000032088)	ENSHHUG00000032083	ENSHHUG00000032079	ENSHHUG00000032076	ENSHHUG00000032073	ENSHHUG00000032064
Salmoninae	ANCESTRAL SPECIES	680								ENSGT00940000165107.B.c	ENSGT00510000049326.b.b.f	ENSGT00940000154668.h	ENSGT00510000049555.f	ENSGT00990000212022	ENSGT01010000222762.a.b	ENSGT00940000160237.b	ENSGT00670000098074.h	ENSGT00520000055591.b.d ##22	ENSGT00940000155899.f.a	ENSGT00510000048363	ENSGT00940000156973	ENSGT00940000157299.c.f
Huchen	MODERN SPECIES	2496										znf131 (ENSHHUG00000036914)	ubox5 (ENSHHUG00000036920)	ENSHHUG00000036925	ENSHHUG00000036936	ENSHHUG00000036940	znf367 (ENSHHUG00000036957)	ENSHHUG00000036968 ##22	ENSHHUG00000036984	PRXL2C (ENSHHUG00000037011)
Salmoninae_a	ANCESTRAL SPECIES	50	ENSGT00950000185904	ENSGT01010000222287.B.b.b.a	ENSGT00530000063775.b.a.a	ENSGT00940000153725.b.d.c	ENSGT00940000158747.i	ENSGT00390000009130.b.d.a.e	ENSGT00390000011383.j	ENSGT00940000165107.B.c	ENSGT00510000049326.b.b.f	ENSGT00940000154668.h	ENSGT00510000049555.f	ENSGT00990000212022	ENSGT01010000222762.a.b	ENSGT00940000160237.b	ENSGT00670000098074.h	ENSGT00520000055591.b.d ##22	ENSGT00940000155899.f.a	ENSGT00510000048363	ENSGT00940000156973	ENSGT00940000157299.c.e	ENSGT00950000182964.a.b.a.a.a.c ##21	ENSGT00940000160343.c	ENSGT00940000165543.g	ENSGT00940000154668.g	ENSGT00510000049326.b.b.e	ENSGT00940000165107.B.d	ENSGT00390000014416	ENSGT00390000011383.i	ENSGT00390000009130.b.d.a.f	ENSGT00940000158747.j	ENSGT00940000156804.a
Salmo	ANCESTRAL SPECIES	19	ENSGT01010000222287.B.b.b.a	ENSGT00530000063775.b.a.a	ENSGT00940000153725.b.d.c	ENSGT00940000156804.a.b	ENSGT00940000158747.i	ENSGT00390000009130.b.d.a.e	ENSGT00390000011383.j.a	ENSGT00940000165107.B.c	ENSGT00510000049326.b.b.f	ENSGT00940000154668.h	ENSGT00510000049555.f	ENSGT00990000212022	ENSGT01010000222762.a.b	ENSGT00940000160237.b	ENSGT00670000098074.h	ENSGT00520000055591.b.d ##22	ENSGT00940000155899.f.a	ENSGT00510000048363	ENSGT00940000156973.z	ENSGT00940000157299.c.f	ENSGT00390000002172.B.a.a.b	ENSGT01080000257756.b	ENSGT00950000182964.a.b.a.a.a.d ##21	ENSGT00940000160343.d	ENSGT00940000165543.h	ENSGT00940000154078.b.b.d	ENSGT00940000156114.d	ENSGT00390000004511.c.b.c.a	ENSGT00940000155498.f.b	ENSGT00390000007246.i	ENSGT01050000244902.a.a.a.a.a.b.f
River trout	MODERN SPECIES	39	rgs7bpa (ENSSTUG00000017611)	ENSSTUG00000017582	plcxd3 (ENSSTUG00000017570)	oxct1a (ENSSTUG00000016515)	rimoc1 (ENSSTUG00000016468)	ghra (ENSSTUG00000016401)	ENSSTUG00000016394	ENSSTUG00000016385	ENSSTUG00000016381	znf131 (ENSSTUG00000016372)	ubox5 (ENSSTUG00000016355)	ENSSTUG00000016327	ENSSTUG00000016307	SLC35D2 (ENSSTUG00000016270)	znf367 (ENSSTUG00000016256)	ENSSTUG00000016246 ##22	ENSSTUG00000016176	PRXL2C (ENSSTUG00000016157)	ENSSTUG00000016135	efna5b (ENSSTUG00000016066)	ENSSTUG00000016034	ENSSTUG00000016010	gadd45ga (ENSSTUG00000015655) ##21	creb3l3l (ENSSTUG00000029460)	ENSSTUG00000029456	LZTS3 (ENSSTUG00000029433)	smyd1b (ENSSTUG00000029303)	oxt (ENSSTUG00000029280)	ZNF366 (ENSSTUG00000029222)	mrps27 (ENSSTUG00000029213)	ptger4a (ENSSTUG00000029208)
Atlantic salmon	MODERN SPECIES	12	ENSSSAG00000045473	ENSSSAG00000045457	ENSSSAG00000045429	rgs7bpa (ENSSSAG00000075615)	ENSSSAG00000075610	plcxd3 (ENSSSAG00000083972)	ENSSSAG00000075606	oxct1a (ENSSSAG00000075167)	rimoc1 (ENSSSAG00000092170)	slr (ENSSSAG00000075118)	SELENOP (ENSSSAG00000075108)	znf131 (ENSSSAG00000075097)	ubox5 (ENSSSAG00000075090)	slc35d2 (ENSSSAG00000075051)	znf367 (ENSSSAG00000118118)	ENSSSAG00000118794 ##22	ENSSSAG00000107080	ENSSSAG00000075034	ENSSSAG00000075024	ENSSSAG00000075026	efna5b (ENSSSAG00000081531)	ENSSSAG00000117711	ENSSSAG00000117984	ENSSSAG00000074997	ENSSSAG00000074995	ga45g (ENSSSAG00000074990) ##21	ENSSSAG00000074981	ENSSSAG00000085275	ENSSSAG00000074978	smyd1b (ENSSSAG00000074939)	ENSSSAG00000074930
Oncorhynchus	ANCESTRAL SPECIES	12	ENSGT00950000185904	ENSGT01010000222287.B.b.b.a	ENSGT00530000063775.b.a.a	ENSGT00940000153725.b.d.c	ENSGT00940000158747.i	ENSGT00390000009130.b.d.a.e	ENSGT00390000011383.j	ENSGT00940000165107.B.c	ENSGT00510000049326.b.b.f	ENSGT00940000154668.h	ENSGT00510000049555.f	ENSGT00990000212022	ENSGT01010000222762.a.b	ENSGT00940000160237.b	ENSGT00670000098074.h	ENSGT00520000055591.b.d ##22	ENSGT00940000155899.f.a	ENSGT00510000048363	ENSGT00940000179359.b	ENSGT00940000157299.c.f	ENSGT01080000257756.b	ENSGT00950000182964.a.b.a.a.a.d ##21	ENSGT00940000160343.d	ENSGT00940000165543.h	ENSGT00940000154078.b.b.d	ENSGT00940000156114.d	ENSGT00390000004511.c.b.c.a	ENSGT00940000155498.f.b	ENSGT00950000185750	ENSGT01050000244902.a.a.a.a.a.b.f	ENSGT00390000005254.c.b.a
Oncorhynchus_a	ANCESTRAL SPECIES	15	ENSGT00940000158560.f	ENSGT00390000000543.b	ENSGT00950000185904	ENSGT01010000222287.B.b.b.a	ENSGT00530000063775.b.a.a	ENSGT00940000153725.b.d.c	ENSGT00940000158747.i	ENSGT00390000009130.b.d.a.e	ENSGT00390000011383.j	ENSGT00940000165107.B.c	ENSGT00510000049326.b.b.f	ENSGT00940000154668.h	ENSGT00510000049555.f	ENSGT00940000160237.b	ENSGT00670000098074.h	ENSGT00520000055591.b.d ##22	ENSGT00940000155899.f.a	ENSGT00510000048363	ENSGT00940000157299.c.f	ENSGT00990000212678.b.a	ENSGT01080000257756.b	ENSGT00950000182964.a.b.a.a.a.d ##21	ENSGT00940000160343.d	ENSGT00940000165543.h	ENSGT00940000154078.b.b.d	ENSGT00940000156114.d	ENSGT00390000004511.c.b.c.a	ENSGT00940000155498.f.b	ENSGT00950000185750	ENSGT01050000244902.a.a.a.a.a.b.f	ENSGT00390000005254.c.b.a
Coho salmon	MODERN SPECIES	28	ENSOKIG00005031449	ENSOKIG00005031452	ENSOKIG00005031469	rgs7bpa (ENSOKIG00005031498)	plcxd3 (ENSOKIG00005031591)	oxct1a (ENSOKIG00005031847)	rimoc1 (ENSOKIG00005037233)	ghra (ENSOKIG00005037268)	ENSOKIG00005037335	znf131 (ENSOKIG00005037348)	ubox5 (ENSOKIG00005037372)	ENSOKIG00005037403	ENSOKIG00005037421	ENSOKIG00005037441	znf367 (ENSOKIG00005037587)	ENSOKIG00005037612 ##22	ENSOKIG00005037757	PRXL2C (ENSOKIG00005038801)	efna5b (ENSOKIG00005038906)	ENSOKIG00005038915	ENSOKIG00005038921	ENSOKIG00005038943	ENSOKIG00005038949	gadd45ga (ENSOKIG00005038979) ##21	ENSOKIG00005039000	ENSOKIG00005039014	LZTS3 (ENSOKIG00005039035)	smyd1b (ENSOKIG00005039072)	ENSOKIG00005039234	ZNF366 (ENSOKIG00005039262)	ENSOKIG00005039304
Chinook salmon	MODERN SPECIES	3	niban2b (ENSOTSG00005011553)	FUT7 (ENSOTSG00005011757)	ENSOTSG00005011760	htr1aa (ENSOTSG00005011761)	ENSOTSG00005011762	rgs7bpa (ENSOTSG00005011763)	plcxd3 (ENSOTSG00005011799)	oxct1a (ENSOTSG00005011807)	rimoc1 (ENSOTSG00005018294)	ghra (ENSOTSG00005018304)	ENSOTSG00005018311	znf131 (ENSOTSG00005018315)	ubox5 (ENSOTSG00005018342)	SLC35D2 (ENSOTSG00005018346)	znf367 (ENSOTSG00005018347)	ENSOTSG00005018351 ##22	ENSOTSG00005018360	PRXL2C (ENSOTSG00005018363)	efna5b (ENSOTSG00005018367)	ENSOTSG00005018369	ENSOTSG00005018371	gadd45ga (ENSOTSG00005018373) ##21	creb3l3l (ENSOTSG00005018376)	ENSOTSG00005018379	LZTS3 (ENSOTSG00005018381)	smyd1b (ENSOTSG00005018384)	oxt (ENSOTSG00005018523)	ZNF366 (ENSOTSG00005018527)	ENSOTSG00005018530	ENSOTSG00005018533	ptger4a (ENSOTSG00005018535)
Rainbow trout	MODERN SPECIES	2	ENSOMYG00000021026	htr1aa (ENSOMYG00000021022)	ENSOMYG00000021017	rgs7bpa (ENSOMYG00000021006)	plcxd3 (ENSOMYG00000020978)	oxct1a (ENSOMYG00000019820)	rimoc1 (ENSOMYG00000019700)	ghra (ENSOMYG00000019673)	ENSOMYG00000019658	znf131 (ENSOMYG00000019538)	ENSOMYG00000063957	ubox5 (ENSOMYG00000019647)	ENSOMYG00000019636	ENSOMYG00000019599	znf367 (ENSOMYG00000019562)	ENSOMYG00000058833 ##22	ENSOMYG00000019502	prxl2c (ENSOMYG00000019471)	ENSOMYG00000051359	ENSOMYG00000019445	efna5b (ENSOMYG00000019435)	ENSOMYG00000061178	gadd45ga (ENSOMYG00000019408) ##21	ENSOMYG00000019390	ENSOMYG00000019374	ENSOMYG00000019360	ENSOMYG00000019290	ENSOMYG00000040202	ENSOMYG00000019109	ENSOMYG00000067799	ENSOMYG00000019105
Osteoglossiformes	ANCESTRAL SPECIES	38	ENSGT00940000162045	ENSGT01030000234573.A.b.b.b.k ##29	ENSGT00940000158739.c	ENSGT00390000014771.b.b	ENSGT00940000157368	ENSGT00940000155674	ENSGT01050000244838.H.c.a	ENSGT00390000009065	ENSGT00390000002743	ENSGT00940000165045	ENSGT00940000155496.b	ENSGT00940000155570	ENSGT00950000183142.a.a	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000156973	ENSGT00940000157299.c	ENSGT00950000182964.a.b.a.a.a ##21	ENSGT00950000182964.a.b.a.a.b ##21	ENSGT00940000160343	ENSGT00940000165543.a	ENSGT00940000154668	ENSGT00510000049326.b.b	ENSGT00940000165107.B	ENSGT00390000014416	ENSGT00390000011383	ENSGT00390000009130.b.d.b	ENSGT00390000009130.b.d.a
Asian bonytongue	MODERN SPECIES	8	plk2b (ENSSFOG00015007640)	si:dkey-190g11.3 (ENSSFOG00015030893)	rab3c (ENSSFOG00015030035)	PDE4D (ENSSFOG00015028475)	elovl7a (ENSSFOG00015007430)	ercc8 (ENSSFOG00015007365)	ndufaf2 (ENSSFOG00015007352)	smim15 (ENSSFOG00015007360)	ZSWIM6 (ENSSFOG00015007307)	KIF2A (ENSSFOG00015007240)	KIF2A (ENSSFOG00015027252)	dimt1l (ENSSFOG00015007217)	ENSSFOG00015030410	SLC35D2 (ENSSFOG00015007130)	znf367 (ENSSFOG00015007099)	zgc:103482 (ENSSFOG00015007041) ##22	cdc14b (ENSSFOG00015007007)	PRXL2C (ENSSFOG00015031608)	FBXL17 (ENSSFOG00015033335)	EFNA5 (ENSSFOG00015028829)	gadd45ga (ENSSFOG00015027513) ##21	GADD45G (ENSSFOG00015006812) ##21	GADD45G (ENSSFOG00015006839) ##21	creb3l3l (ENSSFOG00015032641)	ENSSFOG00015006773	znf131 (ENSSFOG00015006767)	ENSSFOG00015006730	ghra (ENSSFOG00015028987)	FBXO4 (ENSSFOG00015006693)	rimoc1 (ENSSFOG00015006683)	oxct1a (ENSSFOG00015006607)
P. kingsleyae	DUPLICATION
P. kingsleyae	MODERN SPECIES	7	mier3b (ENSPKIG00000018744) ##29	plk2b (ENSPKIG00000018683)	si:dkey-190g11.3 (ENSPKIG00000018643)	rab3c (ENSPKIG00000018618)	ENSPKIG00000018596	PDE4D (ENSPKIG00000018391)	elovl7a (ENSPKIG00000018248)	ercc8 (ENSPKIG00000018192)	ndufaf2 (ENSPKIG00000018166)	smim15 (ENSPKIG00000018143)	ZSWIM6 (ENSPKIG00000018108)	kif2a (ENSPKIG00000017956)	dimt1l (ENSPKIG00000017870)	SLC35D2 (ENSPKIG00000017832)	znf367 (ENSPKIG00000017815)	zgc:103482 (ENSPKIG00000017795) ##22	ENSPKIG00000017732	PRXL2C (ENSPKIG00000017696)	FBXL17 (ENSPKIG00000017679)	FBXL17 (ENSPKIG00000017667)	EFNA5 (ENSPKIG00000017639)	gadd45ga (ENSPKIG00000017614) ##21	GADD45G (ENSPKIG00000017605) ##21	GADD45G (ENSPKIG00000017590) ##21	GADD45G (ENSPKIG00000017577) ##21	creb3l3l (ENSPKIG00000017537)	ENSPKIG00000017499	znf131 (ENSPKIG00000017455)	ENSPKIG00000017419	ghra (ENSPKIG00000017380)	ENSPKIG00000017334
P. kingsleyae	MODERN SPECIES	221	MYO18B (ENSPKIG00000009736)	ENSPKIG00000009807	grk3 (ENSPKIG00000009838)	acads (ENSPKIG00000009951)	cldn5b (ENSPKIG00000009972)	ENSPKIG00000009987	LETM2 (ENSPKIG00000010040)	NSD3 (ENSPKIG00000010104)	KCMF1 (ENSPKIG00000010141)	ntrk2b (ENSPKIG00000010169)	hnrpkl (ENSPKIG00000010245)	ENSPKIG00000010322	ENSPKIG00000010524	smc5 (ENSPKIG00000010713)	tjp2a (ENSPKIG00000010798)	ENSPKIG00000010843 ##22	EFNA5 (ENSPKIG00000010862)	ENSPKIG00000010871	CCDC152 (ENSPKIG00000010892)	ghrb (ENSPKIG00000010983)	rimoc1 (ENSPKIG00000011126)	oxct1b (ENSPKIG00000011151)	c6 (ENSPKIG00000011218)	RGS7BP (ENSPKIG00000011267)	rnf180b (ENSPKIG00000011285)	ANK1 (ENSPKIG00000011319)	ewsr1a (ENSPKIG00000011381)	slc35e4 (ENSPKIG00000011403)	ENSPKIG00000011419
Spotted gar	MODERN SPECIES	658	tjp2a (ENSLOCG00000009431)	fxn (ENSLOCG00000009422)	pip5k1bb (ENSLOCG00000009412)	unc45b (ENSLOCG00000009386)	pgm5 (ENSLOCG00000009373)	foxd5 (ENSLOCG00000017537)	cbwd (ENSLOCG00000009357)	DOCK8 (ENSLOCG00000009324)	AOPEP (ENSLOCG00000009303)	fancc (ENSLOCG00000009272)	ptch1 (ENSLOCG00000009249)	ercc6l2 (ENSLOCG00000009238)	hsd17b3 (ENSLOCG00000009228)	ENSLOCG00000009217	znf367 (ENSLOCG00000009209)	ENSLOCG00000009195 ##22	ENSLOCG00000009181	PRXL2C (ENSLOCG00000009173)	ENSLOCG00000009168	EFNA5 (ENSLOCG00000009155)	nudt12 (ENSLOCG00000009146)	ENSLOCG00000009132	macir (ENSLOCG00000017536)	PPIP5K2 (ENSLOCG00000009118)	PAM (ENSLOCG00000009107)	SLCO4C1 (ENSLOCG00000009096)	ENSLOCG00000009080	st8sia4 (ENSLOCG00000009075)	FAM174A (ENSLOCG00000009066)	chd1 (ENSLOCG00000009047)	reep5 (ENSLOCG00000009034)
Reedfish	MODERN SPECIES	15	ccng2 (ENSECRG00000006638)	coq2 (ENSECRG00000006619)	plac8.1 (ENSECRG00000006613)	cops4 (ENSECRG00000006594)	lin54 (ENSECRG00000006577)	sec31a (ENSECRG00000006460)	foxd5 (ENSECRG00000006415)	cbwd (ENSECRG00000006397)	DOCK8 (ENSECRG00000006323)	AOPEP (ENSECRG00000006291)	fancc (ENSECRG00000006271)	ptch1 (ENSECRG00000006256)	ercc6l2 (ENSECRG00000006234)	hsd17b3 (ENSECRG00000006216)	znf367 (ENSECRG00000006207)	HABP4 (ENSECRG00000006185) ##22	ENSECRG00000006152	PRXL2C (ENSECRG00000006134)	ENSECRG00000006124	ENSECRG00000006116	ENSECRG00000006107	EFNA5 (ENSECRG00000006097)	nudt12 (ENSECRG00000006079)	ENSECRG00000006065	macir (ENSECRG00000006054)	PPIP5K2 (ENSECRG00000006046)	PAM (ENSECRG00000005993)	SLCO4C1 (ENSECRG00000005955)	ENSECRG00000005935	ENSECRG00000005634	ENSECRG00000005582
Sarcopterygii	ANCESTRAL SPECIES	1									ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000163752	ENSGT00940000160266	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000168987	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000166301	ENSGT00940000154960	ENSGT00940000156081	ENSGT00940000168229	ENSGT00950000182925.D	ENSGT00940000161260	ENSGT01050000244887.A.b.b	ENSGT00950000182870.a.a.a.b	ENSGT00950000182971.C	ENSGT00490000043356.b	ENSGT00940000159594	ENSGT00950000182964.a.b.a ##21
Tetrapoda	ANCESTRAL SPECIES	2	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000163752	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000168987	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000166301	ENSGT00940000154960	ENSGT00940000156081	ENSGT00940000168229	ENSGT00950000182925.D	ENSGT00940000161260	ENSGT01050000244887.A.b.b	ENSGT00950000182870.a.a.a.b	ENSGT00950000182971.C	ENSGT00490000043356.b	ENSGT00940000159594	ENSGT00950000182964.a.b.a ##21
Amniota	ANCESTRAL SPECIES	4	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000163752	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT01040000244442	ENSGT00940000157674	ENSGT00940000156081	ENSGT00940000168229	ENSGT00950000182925.D.b	ENSGT00950000182925.D.a.a.b.a	ENSGT00940000161260	ENSGT01050000244887.A.b.b	ENSGT00950000182870.a.a.a.b	ENSGT00950000182971.C	ENSGT00950000186231	ENSGT00490000043356.b	ENSGT00390000013795	ENSGT00940000159594	ENSGT00950000182964.a.b.a ##21
Sauria	ANCESTRAL SPECIES	5	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000163752	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00530000069333	ENSGT00940000166301	ENSGT00940000162302	ENSGT00940000154960	ENSGT00940000157674	ENSGT00940000156081	ENSGT00940000168229	ENSGT00950000182925.D.b	ENSGT00940000161260	ENSGT01050000244887.A.b.b	ENSGT00950000182870.a.a.a.b	ENSGT00950000182971.C	ENSGT00950000186231
Archelosauria	ANCESTRAL SPECIES	7	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000163752	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00530000069333	ENSGT00940000166301	ENSGT00940000162302	ENSGT00940000154960	ENSGT00940000157674	ENSGT00940000156081	ENSGT00940000168229	ENSGT00950000182925.D.b	ENSGT00940000161260	ENSGT01050000244887.A.b.b	ENSGT00950000182870.a.a.a.b	ENSGT00950000182971.C	ENSGT00950000186231
Cryptodira	ANCESTRAL SPECIES	9	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000163752	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000166301	ENSGT00940000162302	ENSGT00940000159076	ENSGT00940000154960	ENSGT00940000157674	ENSGT00940000156081	ENSGT00940000168229	ENSGT00950000182925.D.b	ENSGT00940000161260	ENSGT01050000244887.A.b.b	ENSGT00950000182870.a.a.a.b	ENSGT00950000182971.C	ENSGT00950000186231
Testudinoidea	ANCESTRAL SPECIES	7	ENSGT00530000063675.b	ENSGT00940000156859	ENSGT00490000043385	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000166301	ENSGT00940000162302	ENSGT00940000159076	ENSGT00940000154960	ENSGT00940000157674	ENSGT00940000156081	ENSGT00940000168229	ENSGT00950000182925.D.b	ENSGT00940000161260	ENSGT01050000244887.A.b.b	ENSGT00950000182870.a.a.a.b	ENSGT00950000182971.C	ENSGT00950000186231
Emydidae	ANCESTRAL SPECIES	20	ENSGT00530000063675.b	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000166301	ENSGT00940000162302	ENSGT00940000159076	ENSGT00940000154960	ENSGT00940000157674	ENSGT00940000156081	ENSGT00940000168229	ENSGT00950000182925.D.b	ENSGT00940000161260	ENSGT01050000244887.A.b.b	ENSGT00950000182870.a.a.a.b	ENSGT00950000182971.C	ENSGT00950000186231
painted turtle	MODERN SPECIES	2400	TUT7 (ENSCPBG00000005272)	ENSCPBG00000005285	ENSCPBG00000005292	GAS1 (ENSCPBG00000005303)	DAPK1 (ENSCPBG00000005312)	ENSCPBG00000005334	FBP1 (ENSCPBG00000005339)	AOPEP (ENSCPBG00000005352)	FANCC (ENSCPBG00000005369)	PTCH1 (ENSCPBG00000005393)	ENSCPBG00000005414	HSD17B3 (ENSCPBG00000005430)	SLC35D2 (ENSCPBG00000005433)	ENSCPBG00000005437	ZNF367 (ENSCPBG00000005439)	HABP4 (ENSCPBG00000005444) ##22	PRXL2C (ENSCPBG00000005459)	ENSCPBG00000005486	CNTNAP4 (ENSCPBG00000005516)	MFSD14B (ENSCPBG00000005536)	ENSCPBG00000005543	ENSCPBG00000005556	NXNL2 (ENSCPBG00000005564)	S1PR3 (ENSCPBG00000005573)	SHC3 (ENSCPBG00000005582)	CKS2 (ENSCPBG00000005596)	ENSCPBG00000005603	SECISBP2 (ENSCPBG00000005608)	SEMA4D (ENSCPBG00000005628)	GADD45G (ENSCPBG00000005658) ##21	DIRAS2 (ENSCPBG00000005686)
Three-toed box turtle	MODERN SPECIES	50	GOLM1 (ENSTMTG00000017769)	TUT7 (ENSTMTG00000017843)	ISCA1 (ENSTMTG00000019131)	GAS1 (ENSTMTG00000019139)	ENSTMTG00000019148	ENSTMTG00000019160	FBP2 (ENSTMTG00000019185)	FBP1 (ENSTMTG00000019197)	AOPEP (ENSTMTG00000019213)	FANCC (ENSTMTG00000019262)	PTCH1 (ENSTMTG00000019304)	ENSTMTG00000019364	HSD17B3 (ENSTMTG00000019390)	SLC35D2 (ENSTMTG00000019445)	ZNF367 (ENSTMTG00000019468)	HABP4 (ENSTMTG00000019479) ##22	ENSTMTG00000019501	PRXL2C (ENSTMTG00000019635)	ENSTMTG00000019650	ENSTMTG00000019671	ENSTMTG00000014342	LRRC2 (ENSTMTG00000014363)	ENSTMTG00000014408	CNTNAP4 (ENSTMTG00000014520)	MFSD14B (ENSTMTG00000015077)	ENSTMTG00000015111	NXNL2 (ENSTMTG00000015137)	S1PR3 (ENSTMTG00000015143)	SHC3 (ENSTMTG00000015154)	CKS2 (ENSTMTG00000015182)	SECISBP2 (ENSTMTG00000015189)
Testudinidae	ANCESTRAL SPECIES	15	ENSGT00530000063675.b	ENSGT00940000156859	ENSGT00490000043385	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000162302	ENSGT00940000154960	ENSGT00940000157674	ENSGT00940000156081	ENSGT00950000182925.D.b	ENSGT00940000161260	ENSGT01050000244887.A.b.b	ENSGT00950000182870.a.a.a.b	ENSGT00950000182971.C	ENSGT00490000043356.b	ENSGT00390000013795	ENSGT00940000159594	ENSGT00950000182964.a.b.a ##21
Goode s thornscrub tortoise	MODERN SPECIES	20	ENSGEVG00005018648	TUT7 (ENSGEVG00005018682)	ENSGEVG00005018735	GAS1 (ENSGEVG00005018746)	DAPK1 (ENSGEVG00005001216)	ENSGEVG00005001271	FBP2 (ENSGEVG00005001295)	FBP1 (ENSGEVG00005001322)	AOPEP (ENSGEVG00005001365)	FANCC (ENSGEVG00005001452)	PTCH1 (ENSGEVG00005001498)	ENSGEVG00005001564	HSD17B3 (ENSGEVG00005001787)	SLC35D2 (ENSGEVG00005001873)	ZNF367 (ENSGEVG00005001896)	HABP4 (ENSGEVG00005001921) ##22	ENSGEVG00005001994	PRXL2C (ENSGEVG00005002075)	ENSGEVG00005002135	LRRC2 (ENSGEVG00005002189)	SASS6 (ENSGEVG00005002210)	ENSGEVG00005002235	CNTNAP4 (ENSGEVG00005002520)	ENSGEVG00005003417	ENSGEVG00005003426	NXNL2 (ENSGEVG00005003435)	S1PR3 (ENSGEVG00005003437)	SHC3 (ENSGEVG00005003455)	CKS2 (ENSGEVG00005003508)	ENSGEVG00005003522	ENSGEVG00005003542
Abingdon island giant tortoise	MODERN SPECIES	1307												ERCC6L2 (ENSCABG00000019617)	HSD17B3 (ENSCABG00000019591)	SLC35D2 (ENSCABG00000019587)	ZNF367 (ENSCABG00000019584)	HABP4 (ENSCABG00000019581) ##22	ENSCABG00000019577	PRXL2C (ENSCABG00000019571)
Chinese turtle	MODERN SPECIES	1541										PTCH1 (ENSPSIG00000008386)	ENSPSIG00000000762	ENSPSIG00000010627	ENSPSIG00000011101	SLC35D2 (ENSPSIG00000011644)	ZNF367 (ENSPSIG00000011709)	HABP4 (ENSPSIG00000012717) ##22	ENSPSIG00000012948	PRXL2C (ENSPSIG00000014568)	ENSPSIG00000014688	ENSPSIG00000014693	ENSPSIG00000014697	LRRC2 (ENSPSIG00000014891)	ENSPSIG00000015237	ENSPSIG00000015615	ENSPSIG00000015954	ENSPSIG00000000764
Archosauria	ANCESTRAL SPECIES	1	ENSGT00940000160897	ENSGT00940000158223	ENSGT00940000155680.d	ENSGT00900000143042	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00530000069333	ENSGT00940000166301	ENSGT00940000162302	ENSGT00940000154960	ENSGT00940000157674	ENSGT00940000156081	ENSGT00950000182925.D.b	ENSGT00940000161260	ENSGT01050000244887.A.b.b	ENSGT00950000182870.a.a.a.b	ENSGT00950000182971.C	ENSGT00490000043356.b	ENSGT00390000013795
Aves	ANCESTRAL SPECIES	4	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00900000143042	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00530000069333	ENSGT00940000166301	ENSGT00940000162302	ENSGT00940000154960	ENSGT00940000157674	ENSGT00940000156081	ENSGT00950000182925.D.b	ENSGT00940000161260	ENSGT01050000244887.A.b.b	ENSGT00950000182870.a.a.a.b	ENSGT00950000182971.C	ENSGT00490000043356.b	ENSGT00390000013795
Neognathae	ANCESTRAL SPECIES	19	ENSGT00530000063675.b	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00530000069333	ENSGT00940000166301	ENSGT00940000162302	ENSGT00940000154960	ENSGT00940000157674	ENSGT00940000156081.b	ENSGT00950000182925.D.b.c	ENSGT00940000161260	ENSGT01050000244887.A.b.b	ENSGT00950000182870.a.a.a.b	ENSGT00950000182971.C	ENSGT00490000043356.b	ENSGT00390000013795
Galloanserae	ANCESTRAL SPECIES	18	ENSGT00530000063675.b	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00530000069333	ENSGT00940000162302	ENSGT00940000154960	ENSGT00940000157674	ENSGT00940000156081.a.b	ENSGT00950000182925.D.b.d	ENSGT00940000161260	ENSGT01050000244887.A.b.b	ENSGT00950000182870.a.a.a.b	ENSGT00950000182971.C	ENSGT00490000043356.b	ENSGT00390000013795	ENSGT00940000159594
Anatidae	ANCESTRAL SPECIES	12	ENSGT00490000043385	ENSGT00940000156859.h	ENSGT00940000156859.g	ENSGT00900000143042	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000162302	ENSGT00940000154960	ENSGT00940000164262.a	ENSGT00940000157674	ENSGT00940000156081.a.b	ENSGT00950000182925.D.b.d	ENSGT00940000161260	ENSGT01050000244887.A.b.b	ENSGT00950000182870.a.a.a.b	ENSGT00950000182971.C	ENSGT00490000043356.b	ENSGT00390000013795	ENSGT00940000159594
Pink-footed goose	MODERN SPECIES	165			ENSABRG00000016275	ENSABRG00000016272	DAPK1 (ENSABRG00000016222)	ENSABRG00000016213	FBP2 (ENSABRG00000016205)	FBP1 (ENSABRG00000016194)	AOPEP (ENSABRG00000016187)	FANCC (ENSABRG00000016174)	PTCH1 (ENSABRG00000016160)	ENSABRG00000016156	HSD17B3 (ENSABRG00000016146)	SLC35D2 (ENSABRG00000016141)	ZNF367 (ENSABRG00000016131)	HABP4 (ENSABRG00000016119) ##22	ENSABRG00000016113	PRXL2C (ENSABRG00000016110)	ENSABRG00000016100	ENSABRG00000016095	LRRC2 (ENSABRG00000016093)
Duck	MODERN SPECIES	4281	NAA35 (ENSAPLG00000015844)	GOLM1 (ENSAPLG00000016726)	ISCA1 (ENSAPLG00000025576)	TUT7 (ENSAPLG00000015510)	DAPK1 (ENSAPLG00000014607)	ENSAPLG00000014266	FBP2 (ENSAPLG00000014181)	FBP1 (ENSAPLG00000013867)	AOPEP (ENSAPLG00000013767)	FANCC (ENSAPLG00000013504)	PTCH1 (ENSAPLG00000012739)	ENSAPLG00000006105	HSD17B3 (ENSAPLG00000006227)	SLC35D2 (ENSAPLG00000024320)	ZNF367 (ENSAPLG00000025910)	HABP4 (ENSAPLG00000008194) ##22	ENSAPLG00000007708	PRXL2C (ENSAPLG00000007699)	ENSAPLG00000007613	LRRC2 (ENSAPLG00000007466)	ENSAPLG00000005000	CNTNAP4 (ENSAPLG00000029241)	MFSD14B (ENSAPLG00000013999)	ENSAPLG00000002923	NXNL2 (ENSAPLG00000000870)	S1PR3 (ENSAPLG00000000836)	SHC3 (ENSAPLG00000013246)	CKS2 (ENSAPLG00000013196)	SECISBP2 (ENSAPLG00000013053)	SEMA4D (ENSAPLG00000012901)	GADD45G (ENSAPLG00000024935) ##21
Phasianidae	ANCESTRAL SPECIES	5	ENSGT00530000063675.b	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211.w	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00530000069333	ENSGT00940000162302	ENSGT00940000154960	ENSGT00940000157674	ENSGT00950000182925.D.b.d	ENSGT00940000161260	ENSGT01050000244887.A.b.b	ENSGT00950000182870.a.a.a.b.j	ENSGT00950000182971.C	ENSGT00490000043356.b	ENSGT00940000159594	ENSGT00950000182964.a.b.a ##21	ENSGT00940000158196
Phasianidae_b	ANCESTRAL SPECIES	5	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211.w	ENSGT00940000155211.x	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00530000069333	ENSGT00940000162302	ENSGT00940000154960	ENSGT00940000157674	ENSGT00950000182925.D.b.d	ENSGT00940000161260	ENSGT01050000244887.A.b.b	ENSGT00950000182870.a.a.a.b.j	ENSGT00950000182971.C	ENSGT00490000043356.b	ENSGT00940000159594	ENSGT00950000182964.a.b.a ##21	ENSGT00940000158196
Chicken	MODERN SPECIES	131	GAS1 (ENSGALG00010010435)	DAPK1 (ENSGALG00010009744)	CTSV (ENSGALG00010010311)	FBP2 (ENSGALG00010010323)	FBP1 (ENSGALG00010010327)	ENSGALG00010010345	ENSGALG00010010369	ENSGALG00010010861	FANCC (ENSGALG00010010393)	PTCH1 (ENSGALG00010010406)	ERCC6L2 (ENSGALG00010010064)	HSD17B3 (ENSGALG00010008777)	ENSGALG00010008799	SLC35D2 (ENSGALG00010008846)	ZNF367 (ENSGALG00010008862)	HABP4 (ENSGALG00010008879) ##22	CDC14B (ENSGALG00010010844)	AAED1 (ENSGALG00010008768)	ENSGALG00010008901	ENSGALG00010008922	CFC1 (ENSGALG00010008928)	LRRC2 (ENSGALG00010008960)	CNTNAP4 (ENSGALG00010008965)	ENSGALG00010008980	SPIN1 (ENSGALG00010009031)	NXNL2 (ENSGALG00010009057)	S1PR3 (ENSGALG00010009116)	SHC3 (ENSGALG00010009132)	ENSGALG00010010414	CKS2 (ENSGALG00010009139)	SECISBP2 (ENSGALG00010009153)
Turkey	MODERN SPECIES	1299	NAA35 (ENSMGAG00000016673)	ENSMGAG00000021522	ENSMGAG00000019140	ENSMGAG00000021470	ENSMGAG00000006592	TUT7 (ENSMGAG00000006542)	ENSMGAG00000006958	AOPEP (ENSMGAG00000006472)	ENSMGAG00000020574	ENSMGAG00000006705	ENSMGAG00000006572	ENSMGAG00000006547	ENSMGAG00000020170	ENSMGAG00000022956	ENSMGAG00000001888	ENSMGAG00000009455 ##22	ENSMGAG00000021387	ENSMGAG00000018206	ENSMGAG00000021017	ENSMGAG00000022962	ENSMGAG00000017732	NXNL2 (ENSMGAG00000022086)	ENSMGAG00000002500	ENSMGAG00000013720	CKS2 (ENSMGAG00000002039)	ENSMGAG00000017119	GADD45G (ENSMGAG00000020493) ##21	SEMA4D (ENSMGAG00000006614)	ENSMGAG00000020419	AUH (ENSMGAG00000006642)	NFIL3 (ENSMGAG00000016056)
Neognathae_b	ANCESTRAL SPECIES	5	ENSGT00530000063675.b	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000166301	ENSGT00940000162302	ENSGT00940000154960	ENSGT00940000157674	ENSGT00940000156081.b	ENSGT00950000182925.D.b.c	ENSGT00940000161260	ENSGT01050000244887.A.b.b	ENSGT00950000182870.a.a.a.b	ENSGT00950000182971.C	ENSGT00490000043356.b	ENSGT00390000013795	ENSGT00940000159594
Neognathae_c	ANCESTRAL SPECIES	2	ENSGT00530000063675.b	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074.j	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000166301	ENSGT00940000162302	ENSGT00940000154960	ENSGT00940000157674	ENSGT00940000156081.a.a	ENSGT00950000182925.D.b.c	ENSGT00940000161260	ENSGT01050000244887.A.b.b	ENSGT00950000182870.a.a.a.b	ENSGT00950000182971.C	ENSGT00490000043356.b	ENSGT00390000013795	ENSGT00940000159594
Golden eagle	MODERN SPECIES	91	GOLM1 (ENSACCG00020013446)	ISCA1 (ENSACCG00020013425)	TUT7 (ENSACCG00020013385)	GAS1 (ENSACCG00020013353)	DAPK1 (ENSACCG00020013294)	ENSACCG00020013225	FBP2 (ENSACCG00020013205)	FBP1 (ENSACCG00020013185)	AOPEP (ENSACCG00020013124)	FANCC (ENSACCG00020013099)	PTCH1 (ENSACCG00020012872)	ENSACCG00020012453	HSD17B3 (ENSACCG00020012387)	SLC35D2 (ENSACCG00020012319)	ZNF367 (ENSACCG00020012262)	HABP4 (ENSACCG00020012217) ##22	ENSACCG00020012179	PRXL2C (ENSACCG00020012119)	ENSACCG00020012070	ENSACCG00020012040	LRRC2 (ENSACCG00020012017)	ENSACCG00020011999	CNTNAP4 (ENSACCG00020011690)	ENSACCG00020011360	MFSD14B (ENSACCG00020011343)	ENSACCG00020011325	NXNL2 (ENSACCG00020011319)	S1PR3 (ENSACCG00020011310)	SHC3 (ENSACCG00020011224)	CKS2 (ENSACCG00020011124)	SECISBP2 (ENSACCG00020011109)
Kakapo	MODERN SPECIES	19	ENSSHBG00005020486	ENSSHBG00005020480	ENSSHBG00005020476	ENSSHBG00005020474	GAS1 (ENSSHBG00005020473)	DAPK1 (ENSSHBG00005020467)	ENSSHBG00005020460	FBP2 (ENSSHBG00005020458)	FBP1 (ENSSHBG00005020457)	AOPEP (ENSSHBG00005020450)	FANCC (ENSSHBG00005020443)	PTCH1 (ENSSHBG00005020292)	HSD17B3 (ENSSHBG00005020235)	SLC35D2 (ENSSHBG00005020231)	ENSSHBG00005020226	HABP4 (ENSSHBG00005020222) ##22	ENSSHBG00005020213	PRXL2C (ENSSHBG00005020210)	ENSSHBG00005020206	LRRC2 (ENSSHBG00005020204)	CNTNAP4 (ENSSHBG00005019059)	ENSSHBG00005018923	ENSSHBG00005018919	NXNL2 (ENSSHBG00005018916)	S1PR3 (ENSSHBG00005018913)	SHC3 (ENSSHBG00005018905)	CKS2 (ENSSHBG00005018901)	SECISBP2 (ENSSHBG00005018886)	ENSSHBG00005018879	SEMA4D (ENSSHBG00005018875)	GADD45G (ENSSHBG00005018870) ##21
Passeriformes	ANCESTRAL SPECIES	7	ENSGT00390000002445	ENSGT00530000063675.b	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000162302	ENSGT00940000154960	ENSGT00940000157674	ENSGT00940000156081.b	ENSGT00950000182925.D.b.c	ENSGT00940000161260	ENSGT01050000244887.A.b.b	ENSGT00950000182870.a.a.a.b	ENSGT00950000182971.C	ENSGT00490000043356.b	ENSGT00390000013795	ENSGT00940000159594	ENSGT00950000182964.a.b.a ##21
Passeriformes_d	ANCESTRAL SPECIES	6	ENSGT00390000002445	ENSGT00530000063675.b	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b.v	ENSGT00940000153321.b.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000162302	ENSGT00940000154960	ENSGT00940000157674	ENSGT00940000156081.b	ENSGT00950000182925.D.b.c	ENSGT00940000161260	ENSGT01050000244887.A.b.b	ENSGT00950000182870.a.a.a.b	ENSGT00950000182971.C	ENSGT00490000043356.b	ENSGT00390000013795	ENSGT00940000159594	ENSGT00950000182964.a.b.a ##21
Flycatcher	MODERN SPECIES	561	NAA35 (ENSFALG00000003574)	GOLM1 (ENSFALG00000003560)	ISCA1 (ENSFALG00000028644)	TUT7 (ENSFALG00000003541)	GAS1 (ENSFALG00000015250)	DAPK1 (ENSFALG00000003534)	ENSFALG00000003529	FBP2 (ENSFALG00000003525)	FBP1 (ENSFALG00000003518)	AOPEP (ENSFALG00000003512)	FANCC (ENSFALG00000003492)	PTCH1 (ENSFALG00000003449)	ENSFALG00000003400	SLC35D2 (ENSFALG00000003362)	ZNF367 (ENSFALG00000026790)	HABP4 (ENSFALG00000003327) ##22	ENSFALG00000003300	PRXL2C (ENSFALG00000003281)	ENSFALG00000003245	ENSFALG00000003233	ENSFALG00000025695	ENSFALG00000012353	ENSFALG00000028695	MFSD14B (ENSFALG00000026777)	ENSFALG00000012406	NXNL2 (ENSFALG00000012417)	S1PR3 (ENSFALG00000014417)	SHC3 (ENSFALG00000012426)	CKS2 (ENSFALG00000012438)	SECISBP2 (ENSFALG00000012441)	ENSFALG00000026549
Passeriformes_g	ANCESTRAL SPECIES	7	ENSGT00390000002445	ENSGT00530000063675.b	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b.v	ENSGT00940000153321.b.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000162302	ENSGT00940000154960	ENSGT00940000157674	ENSGT00940000156081.b	ENSGT00950000182925.D.b.c	ENSGT00940000161260	ENSGT01050000244887.A.b.b	ENSGT00950000182870.a.a.a.b	ENSGT00950000182971.C	ENSGT00490000043356.b	ENSGT00390000013795	ENSGT00940000159594	ENSGT00950000182964.a.b.a ##21
Medium ground finch	MODERN SPECIES	130	GOLM1 (ENSGFOG00000013605)	ISCA1 (ENSGFOG00000013607)	TUT7 (ENSGFOG00000013609)	ENSGFOG00000013629	ENSGFOG00000013641	FBP2 (ENSGFOG00000013642)	FBP1 (ENSGFOG00000013646)	AOPEP (ENSGFOG00000013651)	FANCC (ENSGFOG00000013678)	ENSGFOG00000013685	PTCH1 (ENSGFOG00000013747)	ENSGFOG00000014126	SLC35D2 (ENSGFOG00000009510)	ZNF367 (ENSGFOG00000009529)	ENSGFOG00000009543	HABP4 (ENSGFOG00000009550) ##22	ENSGFOG00000009582	PRXL2C (ENSGFOG00000009680)	ENSGFOG00000009683	LRRC2 (ENSGFOG00000009689)
Passeroidea	ANCESTRAL SPECIES	23	ENSGT00390000002445	ENSGT00530000063675.b	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b.v	ENSGT00940000153321.b.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000162302	ENSGT00940000154960	ENSGT00940000157674	ENSGT00940000156081.b	ENSGT00950000182925.D.b.c	ENSGT00940000161260	ENSGT01050000244887.A.b.b	ENSGT00950000182870.a.a.a.b	ENSGT00950000182971.C	ENSGT00490000043356.b	ENSGT00390000013795	ENSGT00940000159594	ENSGT00950000182964.a.b.a ##21
Common canary	MODERN SPECIES	54	AGTPBP1 (ENSSCAG00000004518)	NAA35 (ENSSCAG00000004504)	GOLM1 (ENSSCAG00000004496)	ISCA1 (ENSSCAG00000004489)	TUT7 (ENSSCAG00000004476)	DAPK1 (ENSSCAG00000004396)	ENSSCAG00000004370	FBP2 (ENSSCAG00000004368)	FBP1 (ENSSCAG00000004365)	AOPEP (ENSSCAG00000004354)	FANCC (ENSSCAG00000004343)	PTCH1 (ENSSCAG00000003709)	ENSSCAG00000003578	SLC35D2 (ENSSCAG00000003562)	ZNF367 (ENSSCAG00000003557)	HABP4 (ENSSCAG00000003552) ##22	ENSSCAG00000003451	PRXL2C (ENSSCAG00000003424)
Zebra finch	MODERN SPECIES	104	CENPH (ENSTGUG00000014185)	ENSTGUG00000021761	SLC30A5 (ENSTGUG00000000636)	ISCA1 (ENSTGUG00000000630)	TUT7 (ENSTGUG00000000624)	GAS1 (ENSTGUG00000000623)	DAPK1 (ENSTGUG00000000606)	ENSTGUG00000000598	FBP1 (ENSTGUG00000000579)	AOPEP (ENSTGUG00000000565)	FANCC (ENSTGUG00000000552)	PTCH1 (ENSTGUG00000000532)	ENSTGUG00000000524	SLC35D2 (ENSTGUG00000000518)	ZNF367 (ENSTGUG00000000513)	HABP4 (ENSTGUG00000000508) ##22	ENSTGUG00000000501	ENSTGUG00000000498	LRRC2 (ENSTGUG00000000492)	CNTNAP4 (ENSTGUG00000000478)	MFSD14B (ENSTGUG00000000471)	ENSTGUG00000000468	NXNL2 (ENSTGUG00000000467)	ENSTGUG00000021698	S1PR3 (ENSTGUG00000028341)	SHC3 (ENSTGUG00000000448)	CKS2 (ENSTGUG00000000446)	SECISBP2 (ENSTGUG00000000440)	SEMA4D (ENSTGUG00000000434)	GADD45G (ENSTGUG00000020252) ##21	DIRAS2 (ENSTGUG00000028424)
African ostrich	DUPLICATION
African ostrich	MODERN SPECIES	844																ENSSCUG00000018180 ##22	ENSSCUG00000018181	ENSSCUG00000018183	ENSSCUG00000018186
African ostrich	MODERN SPECIES	437																ENSSCUG00000010133 ##22	ENSSCUG00000010132	ENSSCUG00000010131
Australian saltwater crocodile	MODERN SPECIES	67				GAS1 (ENSCPRG00005009919)	DAPK1 (ENSCPRG00005009938)	ENSCPRG00005009953	FBP1 (ENSCPRG00005009957)	AOPEP (ENSCPRG00005009992)	FANCC (ENSCPRG00005010001)	PTCH1 (ENSCPRG00005010014)	ENSCPRG00005010038	ENSCPRG00005010078	HSD17B3 (ENSCPRG00005010085)	SLC35D2 (ENSCPRG00005010116)	ZNF367 (ENSCPRG00005010128)	HABP4 (ENSCPRG00005010131) ##22	ENSCPRG00005010138	PRXL2C (ENSCPRG00005010147)	ENSCPRG00005010154	LRRC2 (ENSCPRG00005010158)	ENSCPRG00005010168	CNTNAP4 (ENSCPRG00005010184)	MFSD14B (ENSCPRG00005010231)	ENSCPRG00005010242	S1PR3 (ENSCPRG00005010252)	SHC3 (ENSCPRG00005010264)	CKS2 (ENSCPRG00005010270)	SECISBP2 (ENSCPRG00005010272)	ENSCPRG00005010281	SEMA4D (ENSCPRG00005010292)	GADD45G (ENSCPRG00005010338) ##21
Lepidosauria	ANCESTRAL SPECIES	1	ENSGT00530000063675.b	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000162302	ENSGT00940000154960	ENSGT00940000157674	ENSGT00940000156081	ENSGT00940000168229	ENSGT00950000182925.D.b	ENSGT00940000161260	ENSGT01050000244887.A.b.b	ENSGT00950000182870.a.a.a.b	ENSGT00950000182971.C	ENSGT00950000186231	ENSGT00490000043356.b	ENSGT00940000159594
Episquamata	ANCESTRAL SPECIES	6	ENSGT00530000063675.b	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000162302	ENSGT00940000154960	ENSGT00940000157674	ENSGT00940000156081	ENSGT00940000168229	ENSGT00950000182925.D.b	ENSGT00940000161260	ENSGT01050000244887.A.b.b	ENSGT00950000182870.a.a.a.b	ENSGT00950000182971.C	ENSGT00950000186231	ENSGT00490000043356.b	ENSGT00940000159594
Toxicofera	ANCESTRAL SPECIES	6	ENSGT00530000063675.b	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000162302	ENSGT00940000154960	ENSGT00940000157674	ENSGT00940000156081	ENSGT00940000168229	ENSGT00950000182925.D.b	ENSGT00940000161260	ENSGT01050000244887.A.b.b	ENSGT00950000182870.a.a.a.b	ENSGT00950000182971.C	ENSGT00950000186231	ENSGT00490000043356.b	ENSGT00940000159594
Elapidae	ANCESTRAL SPECIES	7	ENSGT00530000063675.b	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000162302	ENSGT00940000154960	ENSGT00940000157674	ENSGT00940000156081	ENSGT00950000182925.D.b	ENSGT00940000161260	ENSGT01050000244887.A.b.b	ENSGT00950000182870.a.a.a.b	ENSGT00950000182971.C	ENSGT00950000186231	ENSGT00490000043356.b	ENSGT00940000159594	ENSGT00950000182964.a.b.a ##21
Indian cobra	MODERN SPECIES	1	DAPK1 (ENSNNAG00000017637)	ENSNNAG00000017651	ENSNNAG00000017653	FBP2 (ENSNNAG00000017657)	ENSNNAG00000017663	FBP1 (ENSNNAG00000017667)	ENSNNAG00000017669	ENSNNAG00000017673	FANCC (ENSNNAG00000017684)	PTCH1 (ENSNNAG00000017696)	ENSNNAG00000017727	ENSNNAG00000017794	HSD17B3 (ENSNNAG00000017809)	SLC35D2 (ENSNNAG00000017833)	ZNF367 (ENSNNAG00000017838)	HABP4 (ENSNNAG00000017841) ##22	ENSNNAG00000017844	PRXL2C (ENSNNAG00000017850)	ENSNNAG00000017855	LRRC2 (ENSNNAG00000017859)	ENSNNAG00000017861	CNTNAP4 (ENSNNAG00000017893)	MFSD14B (ENSNNAG00000018114)	ENSNNAG00000018119	NXNL2 (ENSNNAG00000018122)	S1PR3 (ENSNNAG00000018125)	SHC3 (ENSNNAG00000018131)	CKS2 (ENSNNAG00000018148)	ENSNNAG00000018154	ENSNNAG00000018159	SEMA4D (ENSNNAG00000018167)
Elapidae_a	ANCESTRAL SPECIES	9	ENSGT00530000063675.b	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011.c	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000162302	ENSGT00940000154960	ENSGT00940000157674	ENSGT00940000156081	ENSGT00950000182925.D.b	ENSGT00940000161260	ENSGT01050000244887.A.b.b	ENSGT00950000182870.a.a.a.b	ENSGT00950000182971.C	ENSGT00950000186231	ENSGT00490000043356.b	ENSGT00940000159594	ENSGT00950000182964.a.b.a ##21
Acanthophiinae	ANCESTRAL SPECIES	9	ENSGT00530000063675.b	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011.c	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000162302	ENSGT00940000154960	ENSGT00940000157674	ENSGT00940000156081	ENSGT00950000182925.D.b	ENSGT00940000161260	ENSGT01050000244887.A.b.b	ENSGT00950000182870.a.a.a.b	ENSGT00950000182971.C	ENSGT00950000186231	ENSGT00490000043356.b	ENSGT00940000159594	ENSGT00950000182964.a.b.a ##21
Eastern brown snake	MODERN SPECIES	23	ENSPTXG00000011172	ISCA1 (ENSPTXG00000011173)	TUT7 (ENSPTXG00000011175)	GAS1 (ENSPTXG00000011177)	DAPK1 (ENSPTXG00000011178)	ENSPTXG00000011179	FBP2 (ENSPTXG00000011180)	FBP1 (ENSPTXG00000011182)	ENSPTXG00000011183	ENSPTXG00000011184	FANCC (ENSPTXG00000011187)	PTCH1 (ENSPTXG00000011192)	ENSPTXG00000011245	SLC35D2 (ENSPTXG00000011247)	ZNF367 (ENSPTXG00000011251)	HABP4 (ENSPTXG00000011254) ##22	ENSPTXG00000011263	PRXL2C (ENSPTXG00000011272)	ENSPTXG00000011281	LRRC2 (ENSPTXG00000011286)	CNTNAP4 (ENSPTXG00000011311)	MFSD14B (ENSPTXG00000012296)	ENSPTXG00000012297	S1PR3 (ENSPTXG00000012298)	SHC3 (ENSPTXG00000012299)	CKS2 (ENSPTXG00000012300)	SECISBP2 (ENSPTXG00000012301)	SEMA4D (ENSPTXG00000012302)	GADD45G (ENSPTXG00000012303) ##21	DIRAS2 (ENSPTXG00000012305)	SYK (ENSPTXG00000012306)
Mainland tiger snake	MODERN SPECIES	1	GAS1 (ENSNSUG00000014372)	ENSNSUG00000014371	ENSNSUG00000014368	ENSNSUG00000014367	ENSNSUG00000014366	FBP2 (ENSNSUG00000014365)	FBP1 (ENSNSUG00000014364)	ENSNSUG00000014363	ENSNSUG00000014361	FANCC (ENSNSUG00000014357)	PTCH1 (ENSNSUG00000014356)	ENSNSUG00000014355	HSD17B3 (ENSNSUG00000014354)	SLC35D2 (ENSNSUG00000014353)	ZNF367 (ENSNSUG00000014352)	HABP4 (ENSNSUG00000014351) ##22	ENSNSUG00000014350	PRXL2C (ENSNSUG00000014349)	ENSNSUG00000014348	LRRC2 (ENSNSUG00000014347)	CNTNAP4 (ENSNSUG00000013940)	ENSNSUG00000013939	ENSNSUG00000013937	ENSNSUG00000013936	NXNL2 (ENSNSUG00000013935)	S1PR3 (ENSNSUG00000013934)	SHC3 (ENSNSUG00000013933)	ENSNSUG00000013932	ENSNSUG00000013931	SECISBP2 (ENSNSUG00000013930)	ENSNSUG00000013929
Blue-lipped sea krait	MODERN SPECIES	954																HABP4 (ENSLLTG00000016091) ##22	ENSLLTG00000016101
Lizard	MODERN SPECIES	1	ENSACAG00000041193	ENSACAG00000013377	ENSACAG00000013328	FBP2 (ENSACAG00000038303)	FBP1 (ENSACAG00000013243)	ENSACAG00000036791	ENSACAG00000013209	FANCC (ENSACAG00000013146)	ENSACAG00000039829	PTCH1 (ENSACAG00000012983)	ENSACAG00000039786	ENSACAG00000012947	HSD17B3 (ENSACAG00000038601)	SLC35D2 (ENSACAG00000037323)	ZNF367 (ENSACAG00000012929)	HABP4 (ENSACAG00000012890) ##22	ENSACAG00000038679	ENSACAG00000012788	PRXL2C (ENSACAG00000012762)	ENSACAG00000012758	ENSACAG00000012757	ENSACAG00000012700	ENSACAG00000044846	ENSACAG00000044940	ENSACAG00000041626	ENSACAG00000043313	ENSACAG00000016407	ENSACAG00000040693	ENSACAG00000016475	ENSACAG00000044283	ENSACAG00000016480
Laterata	ANCESTRAL SPECIES	8	ENSGT00530000063675.b	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000162302	ENSGT00940000154960	ENSGT00940000157674	ENSGT00940000156081	ENSGT00940000168229	ENSGT00950000182925.D.b	ENSGT00940000161260	ENSGT01050000244887.A.b.b	ENSGT00950000182870.a.a.a.b	ENSGT00950000182971.C	ENSGT00490000043356.b	ENSGT00940000159594	ENSGT00950000182964.a.b.a ##21
Common wall lizard	MODERN SPECIES	2	MEGF10 (ENSPMRG00000016004)	ENSPMRG00000016048	ENSPMRG00000016051	SLC12A2 (ENSPMRG00000016289)	FBN2 (ENSPMRG00000018232)	SLC27A6 (ENSPMRG00000022451)	ADAMTS19 (ENSPMRG00000022477)	MINAR2 (ENSPMRG00000022544)	CHSY3 (ENSPMRG00000022548)	HINT1 (ENSPMRG00000022550)	ENSPMRG00000022553	CDC42SE2 (ENSPMRG00000022560)	SLC35D2 (ENSPMRG00000022574)	ENSPMRG00000022588	ZNF367 (ENSPMRG00000014433)	HABP4 (ENSPMRG00000014438) ##22	ENSPMRG00000014448	PRXL2C (ENSPMRG00000014463)	ENSPMRG00000014467	ENSPMRG00000014469	ENSPMRG00000014473	LRRC2 (ENSPMRG00000014481)	ENSPMRG00000014488	ENSPMRG00000014497	CNTNAP4 (ENSPMRG00000014670)	ENSPMRG00000016201	ENSPMRG00000016205	ENSPMRG00000016223	ENSPMRG00000016234	ENSPMRG00000016241	ENSPMRG00000016247
Argentine black and white tegu	MODERN SPECIES	25	GOLM1 (ENSSMRG00000019185)	ISCA1 (ENSSMRG00000019188)	ENSSMRG00000019189	GAS1 (ENSSMRG00000019190)	DAPK1 (ENSSMRG00000019192)	ENSSMRG00000019193	FBP2 (ENSSMRG00000019194)	FBP1 (ENSSMRG00000019195)	AOPEP (ENSSMRG00000019197)	FANCC (ENSSMRG00000019201)	PTCH1 (ENSSMRG00000019202)	ENSSMRG00000019203	HSD17B3 (ENSSMRG00000019207)	SLC35D2 (ENSSMRG00000019213)	ZNF367 (ENSSMRG00000019214)	HABP4 (ENSSMRG00000019215) ##22	ENSSMRG00000019216	PRXL2C (ENSSMRG00000019222)	ENSSMRG00000019224	LRRC2 (ENSSMRG00000019225)	CNTNAP4 (ENSSMRG00000019250)	ENSSMRG00000019254	ENSSMRG00000019255	MFSD14B (ENSSMRG00000019256)	ENSSMRG00000019260	NXNL2 (ENSSMRG00000019262)	ENSSMRG00000019263	S1PR3 (ENSSMRG00000019266)	SHC3 (ENSSMRG00000019267)	CKS2 (ENSSMRG00000019268)	SECISBP2 (ENSSMRG00000019269)
tuatara	MODERN SPECIES	1143	TUT7 (ENSSPUG00000004029)	GAS1 (ENSSPUG00000004079)	DAPK1 (ENSSPUG00000004089)	ENSSPUG00000004123	FBP2 (ENSSPUG00000004131)	FBP1 (ENSSPUG00000004145)	ENSSPUG00000004161	ENSSPUG00000004172	FANCC (ENSSPUG00000004208)	PTCH1 (ENSSPUG00000004239)	ENSSPUG00000004336	HSD17B3 (ENSSPUG00000004509)	ENSSPUG00000004523	ENSSPUG00000004528	ZNF367 (ENSSPUG00000004543)	HABP4 (ENSSPUG00000004571) ##22	ENSSPUG00000004583	PRXL2C (ENSSPUG00000004606)	ENSSPUG00000004632
Mammalia	ANCESTRAL SPECIES	24	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000163752	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT01040000244442	ENSGT00940000157674	ENSGT00940000156081	ENSGT00950000182925.D.a.a.b.a	ENSGT00940000161260	ENSGT01050000244887.A.b.b	ENSGT00950000182870.a.a.a.b	ENSGT00950000182971.C	ENSGT00950000186231	ENSGT00490000043356.b	ENSGT00390000013795	ENSGT00940000159594	ENSGT00950000182964.a.b.a ##21	ENSGT00940000158196	ENSGT00940000159053
Theria	ANCESTRAL SPECIES	30	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00390000002550	ENSGT00940000163752	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT01040000244442	ENSGT00940000157674	ENSGT00940000156081	ENSGT00950000182925.D.a.a.b.a	ENSGT00940000161260	ENSGT01050000244887.A.b.b	ENSGT00950000182870.a.a.a.b	ENSGT00950000182971.C	ENSGT00950000186231	ENSGT00490000043356.b	ENSGT00390000013795	ENSGT00940000159594	ENSGT00950000182964.a.b.a ##21	ENSGT00940000158196	ENSGT00940000159053
Marsupialia	ANCESTRAL SPECIES	6	ENSGT00940000158028	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000162302	ENSGT00940000157674	ENSGT00940000156081	ENSGT00950000182803.A.a.a	ENSGT00940000159416	ENSGT00940000157932	ENSGT00940000156254	ENSGT00940000157239	ENSGT00940000160079	ENSGT00940000164686	ENSGT00940000160215	ENSGT00940000154615	ENSGT00940000160153
Marsupialia_b	ANCESTRAL SPECIES	18	ENSGT00940000158028	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000162302	ENSGT00940000157674	ENSGT00940000156081	ENSGT00950000182803.A.a.a	ENSGT00940000157932	ENSGT00940000159416	ENSGT00940000156254	ENSGT00940000157239	ENSGT00940000160079	ENSGT00940000164686	ENSGT00940000160215	ENSGT00940000154615	ENSGT00940000160153
Diprotodontia	ANCESTRAL SPECIES	14	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b.e.b.b	ENSGT00940000153321.b.b.e.a	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000162302	ENSGT00940000157674	ENSGT00940000156081	ENSGT00950000182803.A.a.a	ENSGT00940000159416	ENSGT00940000157932	ENSGT00940000156254	ENSGT00940000157239	ENSGT00940000160079	ENSGT00940000164686	ENSGT00940000160215	ENSGT00940000154615	ENSGT00940000160153
Diprotodontia_a	ANCESTRAL SPECIES	13	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b.e.b.b	ENSGT00940000153321.b.b.e.a	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000162302	ENSGT00940000154815.a.a.b	ENSGT00530000065109.p	ENSGT00940000157674	ENSGT00940000156081	ENSGT00950000182803.A.a.a	ENSGT00940000157932	ENSGT00940000159416	ENSGT00940000156254	ENSGT00940000157239	ENSGT00940000160079	ENSGT00940000164686	ENSGT00940000160215
koala	MODERN SPECIES	217		DAPK1 (ENSPCIG00000003658)	ENSPCIG00000003703	ENSPCIG00000019574	ENSPCIG00000003712	FBP2 (ENSPCIG00000003720)	FBP1 (ENSPCIG00000003724)	AOPEP (ENSPCIG00000003731)	FANCC (ENSPCIG00000003753)	PTCH1 (ENSPCIG00000028141)	ENSPCIG00000015039	ENSPCIG00000020095	HSD17B3 (ENSPCIG00000011963)	SLC35D2 (ENSPCIG00000011965)	ZNF367 (ENSPCIG00000011966)	HABP4 (ENSPCIG00000012647) ##22	ENSPCIG00000012650	PRXL2C (ENSPCIG00000012654)	ENSPCIG00000012993	ENSPCIG00000013135	LRRC2 (ENSPCIG00000007239)
Common wonbat	MODERN SPECIES	1043	GAS1 (ENSVURG00010009126)	DAPK1 (ENSVURG00010009082)	ENSVURG00010009051	ENSVURG00010009043	FBP2 (ENSVURG00010009012)	ENSVURG00010009003	ENSVURG00010008957	ENSVURG00010008944	AOPEP (ENSVURG00010008898)	ENSVURG00010008849	PTCH1 (ENSVURG00010008737)	ENSVURG00010008678	HSD17B3 (ENSVURG00010008649)	SLC35D2 (ENSVURG00010008615)	ZNF367 (ENSVURG00010008593)	HABP4 (ENSVURG00010008580) ##22	ENSVURG00010008524	PRXL2C (ENSVURG00010008497)	ENSVURG00010008474	LRRC2 (ENSVURG00010008461)	ENSVURG00010008426	ENSVURG00010008401	CNTNAP4 (ENSVURG00010006392)	ENSVURG00010006225	PRPSAP2 (ENSVURG00010006180)	FAM83G (ENSVURG00010006169)	SLC5A10 (ENSVURG00010006136)	ENSVURG00010006089	EPN2 (ENSVURG00010006060)	B9D1 (ENSVURG00010006008)	ENSVURG00010005995
Tasmanian devil	MODERN SPECIES		ENSSHAG00000007658	ENSSHAG00000029182	TUT7 (ENSSHAG00000008290)	GAS1 (ENSSHAG00000029300)	ENSSHAG00000006828	ENSSHAG00000008692	ENSSHAG00000025516	ENSSHAG00000030991	ENSSHAG00000030168	AOPEP (ENSSHAG00000010555)	FANCC (ENSSHAG00000013222)	PTCH1 (ENSSHAG00000014543)	ENSSHAG00000031181	HSD17B3 (ENSSHAG00000007500)	ZNF367 (ENSSHAG00000031979)	HABP4 (ENSSHAG00000009392) ##22	ENSSHAG00000009715	ENSSHAG00000010551	ENSSHAG00000031933	ENSSHAG00000003296	ENSSHAG00000031187	ENSSHAG00000002005	ENSSHAG00000028252	ENSSHAG00000009592	ENSSHAG00000024541	FAM83G (ENSSHAG00000027616)	SLC5A10 (ENSSHAG00000010732)	ENSSHAG00000011903	EPN2 (ENSSHAG00000012797)	B9D1 (ENSSHAG00000013260)	MAPK7 (ENSSHAG00000013583)
Opossum	MODERN SPECIES	5	DAPK1 (ENSMODG00000003480)	ENSMODG00000048938	ENSMODG00000048250	ENSMODG00000002844	ENSMODG00000047829	FBP2 (ENSMODG00000002818)	FBP1 (ENSMODG00000045062)	AOPEP (ENSMODG00000002798)	FANCC (ENSMODG00000002781)	ENSMODG00000051440	PTCH1 (ENSMODG00000002769)	ENSMODG00000002718	ENSMODG00000048350	SLC35D2 (ENSMODG00000000488)	ZNF367 (ENSMODG00000038408)	HABP4 (ENSMODG00000000514) ##22	ENSMODG00000000544	PRXL2C (ENSMODG00000036541)	TDGF1 (ENSMODG00000041568)	LRRC2 (ENSMODG00000000566)	ENSMODG00000045888	CNTNAP4 (ENSMODG00000000655)	ENSMODG00000000664	ENSMODG00000045176	MFSD14B (ENSMODG00000000820)	PRPSAP2 (ENSMODG00000000846)	ENSMODG00000000937	FAM83G (ENSMODG00000000947)	GRAP (ENSMODG00000048601)	ENSMODG00000039320	EPN2 (ENSMODG00000000977)
Eutheria	ANCESTRAL SPECIES	7	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b.l.a	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00390000002550	ENSGT00940000163752	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000156081	ENSGT00950000182925.D.a.a.b.a	ENSGT00940000161260	ENSGT01050000244887.A.b.b	ENSGT00950000182870.a.a.a.b	ENSGT00950000182971.C	ENSGT00950000186231	ENSGT00490000043356.b	ENSGT00390000013795	ENSGT00940000159594	ENSGT00950000182964.a.b.a ##21	ENSGT00940000158196	ENSGT00940000159053	ENSGT00940000157484	ENSGT00940000160540
Boreoeutheria	ANCESTRAL SPECIES	10	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000154367.b	ENSGT00940000153321.b.b.l.a	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00390000002550	ENSGT00940000163752	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000168987	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000153505.a.b.b	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00530000069333.a	ENSGT00960000189495	ENSGT00390000004113	ENSGT00940000160218	ENSGT00940000158148	ENSGT00530000063168.a.a.a	ENSGT00940000157161.b	ENSGT00940000158892.b	ENSGT00390000016408
Euarchontoglires	ANCESTRAL SPECIES	10	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000154367.b	ENSGT00940000153321.b.b.l.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00390000002550	ENSGT00940000163752	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000153505.a.b.b	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00530000069333.a	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.a.a.a.a	ENSGT00940000163669	ENSGT00940000156081	ENSGT00940000163284	ENSGT00550000074921	ENSGT00390000004860	ENSGT00940000157238	ENSGT00940000160986
Euarchontoglires_A	ANCESTRAL SPECIES	10	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b.l.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00390000002550	ENSGT00940000163752	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000153505.a.b.b	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00530000069333.a	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.a.a.a.a	ENSGT00950000183043.a.b.b.a.b	ENSGT00940000163669	ENSGT00940000156081	ENSGT00940000163284	ENSGT00550000074921	ENSGT00390000004860	ENSGT00940000157238
Glires	ANCESTRAL SPECIES	9	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b.l.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000163752	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000153505.a.b.b	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00530000069333.a	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.a.a.a.a	ENSGT00950000183043.a.b.b.a.b	ENSGT00940000163669	ENSGT00940000156081	ENSGT00940000163284	ENSGT00550000074921	ENSGT00390000004860	ENSGT00940000157238
Rodentia	ANCESTRAL SPECIES	9	ENSGT00940000164141	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b.l.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000153505.a.b.b	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00530000069333.a	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.a.a.a.a	ENSGT00950000183043.a.b.b.a.b	ENSGT00940000163669	ENSGT00940000156081	ENSGT00940000163284	ENSGT00550000074921	ENSGT00390000004860	ENSGT00940000157238
Rodentia_A	ANCESTRAL SPECIES	30						ENSGT00940000154367.b.d	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000153505.a.b.b	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00530000069333.a	ENSGT00940000160228	ENSGT00940000163669	ENSGT00940000156081	ENSGT00940000163284	ENSGT00550000074921	ENSGT00390000004860	ENSGT00940000157238	ENSGT00940000160986	ENSGT00940000157444
Sciuridae	ANCESTRAL SPECIES	48	ENSGT00390000000724.c.b	ENSGT00940000156554	ENSGT00390000002368	ENSGT01030000234510.a.a.a.a.a.a	ENSGT01030000234510.a.a.b	ENSGT00940000154367.b.d	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000153505.a.b.b	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00530000069333.a	ENSGT00940000160228	ENSGT00940000163669	ENSGT00940000156081	ENSGT00940000163284	ENSGT00550000074921	ENSGT00390000004860	ENSGT00390000011897	ENSGT00940000157238	ENSGT00940000160986
Marmotini	ANCESTRAL SPECIES	67	ENSGT00390000000724.c.b	ENSGT00940000156554	ENSGT00390000002368	ENSGT01030000234510.a.a.a.a.a.a	ENSGT01030000234510.a.a.b	ENSGT00940000153321.b.b.l.a	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000153505.a.b.b	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00530000069333.a	ENSGT00940000160228	ENSGT00940000163669	ENSGT00940000156081	ENSGT00940000163284	ENSGT00550000074921	ENSGT00390000004860	ENSGT00940000157238	ENSGT00940000160986	ENSGT00940000157444
Alpin marmot	MODERN SPECIES	89					MC5R (ENSMMMG00000002904)	MC2R (ENSMMMG00000002896)	ENSMMMG00000002840	FBP2 (ENSMMMG00000002826)	FBP1 (ENSMMMG00000002815)	AOPEP (ENSMMMG00000002776)	FANCC (ENSMMMG00000002674)	PTCH1 (ENSMMMG00000002556)	ENSMMMG00000002531	HSD17B3 (ENSMMMG00000002462)	SLC35D2 (ENSMMMG00000002267)	ENSMMMG00000002250 ##22	ENSMMMG00000002227	PRXL2C (ENSMMMG00000022044)	ZNF510 (ENSMMMG00000022042)	ZNF782 (ENSMMMG00000022039)	ENSMMMG00000022038	CTSV (ENSMMMG00000022033)	ENSMMMG00000022032	ENSMMMG00000022029	ENSMMMG00000022016	ENSMMMG00000022012	SPIN1 (ENSMMMG00000021994)	S1PR3 (ENSMMMG00000021989)	SHC3 (ENSMMMG00000021983)	CKS2 (ENSMMMG00000021980)	SECISBP2 (ENSMMMG00000021975)
Marmotini_b	ANCESTRAL SPECIES	154													ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000153505.a.b.b	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00530000069333.a	ENSGT00940000160228	ENSGT00940000163669	ENSGT00940000156081	ENSGT00940000163284	ENSGT00550000074921	ENSGT00390000004860	ENSGT00390000011897	ENSGT00940000157238	ENSGT00940000160986
Squirrel	MODERN SPECIES	87													HSD17B3 (ENSSTOG00000004893)	SLC35D2 (ENSSTOG00000005639)	ZNF367 (ENSSTOG00000005655)	ENSSTOG00000025805 ##22	ENSSTOG00000028527	PRXL2C (ENSSTOG00000021859)	ZNF782 (ENSSTOG00000031527)	CTSV (ENSSTOG00000007841)	ENSSTOG00000033524	FAM240B (ENSSTOG00000031821)	ENSSTOG00000004899	ZNF658 (ENSSTOG00000030701)	ENSSTOG00000034953	MFSD14B (ENSSTOG00000013898)	ENSSTOG00000033485	ZNF484 (ENSSTOG00000030040)	IARS1 (ENSSTOG00000015173)	NOL8 (ENSSTOG00000015195)	CENPP (ENSSTOG00000030603)
Arctic ground squirrel	MODERN SPECIES	770														SLC35D2 (ENSUPAG00010003656)	ZNF367 (ENSUPAG00010003641)	HABP4 (ENSUPAG00010003633) ##22	ENSUPAG00010003529	PRXL2C (ENSUPAG00010003522)	ZNF510 (ENSUPAG00010003515)	ZNF782 (ENSUPAG00010003510)
Eurasian red squirrel	MODERN SPECIES	4	RNMT (ENSSVLG00005016346)	MC5R (ENSSVLG00005005340)	MC2R (ENSSVLG00005005361)	ENSSVLG00005005381	ENSSVLG00005005478	FBP2 (ENSSVLG00005005833)	FBP1 (ENSSVLG00005005878)	AOPEP (ENSSVLG00005005936)	FANCC (ENSSVLG00005006217)	ENSSVLG00005006388	PTCH1 (ENSSVLG00005006529)	ERCC6L2 (ENSSVLG00005007060)	HSD17B3 (ENSSVLG00005007249)	SLC35D2 (ENSSVLG00005007372)	ZNF367 (ENSSVLG00005007498)	HABP4 (ENSSVLG00005007550) ##22	ENSSVLG00005007732	ENSSVLG00005008017	ZNF510 (ENSSVLG00005008057)	ENSSVLG00005008085	ZNF782 (ENSSVLG00005008114)	ENSSVLG00005008130	ENSSVLG00005008143	ENSSVLG00005008172	CTSV (ENSSVLG00005008235)	ENSSVLG00005008296	ENSSVLG00005008320	ENSSVLG00005008350	ENSSVLG00005008387	ENSSVLG00005008425 ##27	ENSSVLG00005008454
Hystricomorpha	ANCESTRAL SPECIES	16	ENSGT00410000025985	ENSGT00600000084617	ENSGT00940000157482.d	ENSGT00940000158566	ENSGT00940000154853.d	ENSGT00940000154853.c	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363
Naked mole-rat female	MODERN SPECIES	14	PRIM2 (ENSHGLG00000017861)	ENSHGLG00000045680	ENSHGLG00000033625	RAB23 (ENSHGLG00000013030)	ENSHGLG00000018722	ZNF451 (ENSHGLG00000018721)	ENSHGLG00000044728	ENSHGLG00000016807	ENSHGLG00000015021	ENSHGLG00000042791	ENSHGLG00000049299	ENSHGLG00000017371	ENSHGLG00000039205	ENSHGLG00000043295	ENSHGLG00000021000	ENSHGLG00000041746 ##22	ENSHGLG00000016044	ENSHGLG00000016555	ENSHGLG00000045218	ENSHGLG00000016253	ENSHGLG00000047769	ENSHGLG00000009668	ENSHGLG00000009488	ENSHGLG00000032934	ENSHGLG00000009673	ENSHGLG00000039274	ENSHGLG00000005827	FANCC (ENSHGLG00000013830)	ENSHGLG00000044815	ENSHGLG00000012042	ENSHGLG00000045615
Hystricomorpha_a	ANCESTRAL SPECIES	12	ENSGT00410000025985	ENSGT00600000084617	ENSGT00940000157482.d	ENSGT00940000158566	ENSGT00940000154853.d	ENSGT00940000154853.c	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000154367.a	ENSGT00940000163284	ENSGT00940000156081	ENSGT00940000153505.a.a.c.b	ENSGT00940000160228	ENSGT00530000069333.a	ENSGT00940000157345.a	ENSGT00940000159128	ENSGT00940000162955	ENSGT00550000074921	ENSGT00390000004860	ENSGT00940000157238	ENSGT00940000160986
Hystricomorpha_b	ANCESTRAL SPECIES	10	ENSGT00600000084617	ENSGT00940000157482.d	ENSGT00940000158566	ENSGT00940000154853.d	ENSGT00940000154853.c	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000163752	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000154367.a	ENSGT00940000163284	ENSGT00940000156081	ENSGT00940000153505.a.a.c.b
Long-tailed chinchilla	MODERN SPECIES	129	SOGA1 (ENSCLAG00000016982)	TLDC2 (ENSCLAG00000017216)	SAMHD1 (ENSCLAG00000017223)	RBL1 (ENSCLAG00000017232)	MROH8 (ENSCLAG00000016903)	RPN2 (ENSCLAG00000015587)	GHRH (ENSCLAG00000017196)	MANBAL (ENSCLAG00000017093)	ENSCLAG00000016812	MFSD14B (ENSCLAG00000016962)	ZNF484 (ENSCLAG00000017189)	ENSCLAG00000016927	CTSV (ENSCLAG00000016668)	ENSCLAG00000017191	ZNF367 (ENSCLAG00000016816)	HABP4 (ENSCLAG00000016858) ##22	ENSCLAG00000017065	PRXL2C (ENSCLAG00000016163)	HSD17B3 (ENSCLAG00000016961)	ERCC6L2 (ENSCLAG00000016395)	PTCH1 (ENSCLAG00000016919)	FANCC (ENSCLAG00000016996)	ENSCLAG00000017128	ENSCLAG00000016743	FBP1 (ENSCLAG00000017181)	FBP2 (ENSCLAG00000016623)	PLAAT2 (ENSCLAG00000016552)	PLAAT3 (ENSCLAG00000017157)	ATL3 (ENSCLAG00000016950)	ENSCLAG00000016800	ZFTA (ENSCLAG00000016548)
Degu	MODERN SPECIES	225	ATL3 (ENSODEG00000017260)	PLAAT3 (ENSODEG00000015571)	ENSODEG00000020437	FBP2 (ENSODEG00000016600)	FBP1 (ENSODEG00000015932)	ENSODEG00000015655	FANCC (ENSODEG00000016098)	ENSODEG00000015865	PTCH1 (ENSODEG00000016019)	ENSODEG00000016127	ENSODEG00000016588	HSD17B3 (ENSODEG00000015880)	SLC35D2 (ENSODEG00000016013)	ENSODEG00000016377	ZNF367 (ENSODEG00000016186)	ENSODEG00000015838 ##22	ENSODEG00000016541	ENSODEG00000016766	ENSODEG00000016407	ENSODEG00000020401	CTSV (ENSODEG00000016040)	ENSODEG00000016317	ENSODEG00000016057
Guinea pig	MODERN SPECIES	42	OGN (ENSCPOG00000031658)	ENSCPOG00000031767	ENSCPOG00000027360	IARS1 (ENSCPOG00000000819)	ENSCPOG00000026037	CDK20 (ENSCPOG00000008588)	ENSCPOG00000027499	FAM240B (ENSCPOG00000029983)	ENSCPOG00000020022	ENSCPOG00000039483	MFSD14B (ENSCPOG00000003933)	ZNF484 (ENSCPOG00000034778)	CTSV (ENSCPOG00000009219)	SLC35D2 (ENSCPOG00000003734)	ZNF367 (ENSCPOG00000001515)	HABP4 (ENSCPOG00000002477) ##22	ENSCPOG00000005956	HSD17B3 (ENSCPOG00000000609)	ENSCPOG00000004544	PTCH1 (ENSCPOG00000002376)	FANCC (ENSCPOG00000032150)	AOPEP (ENSCPOG00000038711)	FBP2 (ENSCPOG00000001636)	PLAAT2 (ENSCPOG00000002122)	PLAAT3 (ENSCPOG00000034238)	ATL3 (ENSCPOG00000003766)	ENSCPOG00000004811	ZFTA (ENSCPOG00000033792)	SPINDOC (ENSCPOG00000004724)	MARK2 (ENSCPOG00000004728)	RCOR2 (ENSCPOG00000004737)
Rodentia_B	ANCESTRAL SPECIES	6	ENSGT00940000164141	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b.l.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000154367.a	ENSGT00530000069333.a	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.a.a.a.a	ENSGT00950000183043.a.b.b.a.b
Myomorpha	ANCESTRAL SPECIES	60	ENSGT00940000164141	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b.l.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000154367.a	ENSGT00530000069333.a	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.a.a.a.a	ENSGT00950000183043.a.b.b.a.b
Muroidea	ANCESTRAL SPECIES	72	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b.l.b.a	ENSGT00940000153321.b.b.l.b.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000154367.a	ENSGT00530000069333.a	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.a.a.a.a	ENSGT00950000183043.a.b.b.a.b
Muroidea_A	ANCESTRAL SPECIES	14	ENSGT00940000153321.b.b.l.b.b.b.a.b	ENSGT00940000153321.b.b.l.b.b.b.a.a.a	ENSGT00940000153321.b.b.l.b.b.b.a.a.b	ENSGT00940000153321.b.b.l.b.b.a.a.a	ENSGT00940000153321.b.b.l.b.b.a.a.b	ENSGT00940000153321.b.b.l.b.b.a.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000154367.a	ENSGT00940000153321.b.b.l.a	ENSGT00940000159128	ENSGT00530000069333.a	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.a.a.a.a	ENSGT00950000183043.a.b.b.a.b.u.a.a	ENSGT00940000157345.a	ENSGT00940000156081	ENSGT01050000244828.c.b.b.b.c.b	ENSGT01100000263494.a.a.a.a.b.b
Cricetidae	ANCESTRAL SPECIES	22	ENSGT00940000153321.b.b.l.b.b.b.a.b	ENSGT00940000153321.b.b.l.b.b.b.a.a.a	ENSGT00940000153321.b.b.l.b.b.b.a.a.b	ENSGT00940000153321.b.b.l.b.b.a.a.a	ENSGT00940000153321.b.b.l.b.b.a.a.b	ENSGT00940000153321.b.b.l.b.b.a.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000154367.a	ENSGT00940000153321.b.b.l.a	ENSGT00940000159128	ENSGT00530000069333.a	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.a.a.a.a	ENSGT00950000183043.a.b.b.a.b.u.a.a	ENSGT00940000157345.a	ENSGT00940000156081	ENSGT01050000244828.c.b.b.b.c.b	ENSGT01100000263494.a.a.a.a.b.b
Cricetidae_B	ANCESTRAL SPECIES	22	ENSGT00940000153321.b.b.l.b.b.b.a.b	ENSGT00940000153321.b.b.l.b.b.b.a.a.a	ENSGT00940000153321.b.b.l.b.b.b.a.a.b	ENSGT00940000153321.b.b.l.b.b.a.a.a	ENSGT00940000153321.b.b.l.b.b.a.a.b	ENSGT00940000153321.b.b.l.b.b.a.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000154367.a	ENSGT00940000153321.b.b.l.a	ENSGT00940000159128	ENSGT00530000069333.a	ENSGT00940000157345.a	ENSGT00940000156081	ENSGT01050000244828.c.b.b.b.c.b	ENSGT01100000263494.a.a.a.a.b.b
Northern American deer mouse	MODERN SPECIES	18	Ctsr (ENSPEMG00000001393)	Cts6 (ENSPEMG00000016021)	Cts8 (ENSPEMG00000021957)	ENSPEMG00000027810	ENSPEMG00000030384	ENSPEMG00000020678	Fbp2 (ENSPEMG00000003200)	Fbp1 (ENSPEMG00000020415)	Aopep (ENSPEMG00000011169)	Fancc (ENSPEMG00000022299)	Ptch1 (ENSPEMG00000016117)	ENSPEMG00000006631	Hsd17b3 (ENSPEMG00000021000)	Slc35d2 (ENSPEMG00000021173)	Zfp367 (ENSPEMG00000013770)	ENSPEMG00000021224 ##22	Cdc14b (ENSPEMG00000020534)	Prxl2c (ENSPEMG00000020672)	ENSPEMG00000021037	Ctsl (ENSPEMG00000021285)	Cdk20 (ENSPEMG00000023165)	Fam240b (ENSPEMG00000020614)	ENSPEMG00000025407	ENSPEMG00000009179	Prss47 (ENSPEMG00000024096)	Mfsd14b (ENSPEMG00000006359)	Or14p1 (ENSPEMG00000000696)	Or9s18 (ENSPEMG00000006716)
Prairie vole	MODERN SPECIES	201												Ercc6l2 (ENSMOCG00000019362)	Hsd17b3 (ENSMOCG00000014078)	Slc35d2 (ENSMOCG00000017626)	Zfp367 (ENSMOCG00000005924)	Habp4 (ENSMOCG00000015678) ##22	Cdc14b (ENSMOCG00000011367)	Prxl2c (ENSMOCG00000001857)	ENSMOCG00000012435	Cdk20 (ENSMOCG00000000538)	Fam240b (ENSMOCG00000009158)	Spata31 (ENSMOCG00000002879)	Prss47 (ENSMOCG00000013963)	Mfsd14b (ENSMOCG00000000124)	ENSMOCG00000000793
Cricetinae	ANCESTRAL SPECIES	20	ENSGT00940000153321.b.b.l.b.b.b.b.b.b	ENSGT00940000153321.b.b.l.b.b.b.b.a	ENSGT00940000153321.b.b.l.b.b.b.a.b	ENSGT00940000153321.b.b.l.b.b.b.a.a.b	ENSGT00940000153321.b.b.l.b.b.a.a.a	ENSGT00940000153321.b.b.l.b.b.a.a.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000154367.a	ENSGT00940000153321.b.b.l.a	ENSGT00940000159128	ENSGT00530000069333.a	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.a.a.a.a	ENSGT00950000183043.a.b.b.a.b.u.a.a	ENSGT00940000157345.a	ENSGT00940000156081
Golden Hamster	MODERN SPECIES	699	Ctsll3 (ENSMAUG00000014374)	Ctsj (ENSMAUG00000008852)	Cts6 (ENSMAUG00000016662)	Ctsr (ENSMAUG00000014961)	Cts8 (ENSMAUG00000018878)	ENSMAUG00000016362	Fbp2 (ENSMAUG00000017596)	Fbp1 (ENSMAUG00000015819)	Aopep (ENSMAUG00000003279)	Fancc (ENSMAUG00000012407)	Ptch1 (ENSMAUG00000014816)	Ercc6l2 (ENSMAUG00000004820)	Hsd17b3 (ENSMAUG00000018759)	Slc35d2 (ENSMAUG00000016504)	Zfp367 (ENSMAUG00000019699)	Habp4 (ENSMAUG00000020977) ##22	Cdc14b (ENSMAUG00000002176)	Prxl2c (ENSMAUG00000007262)	Ctsv (ENSMAUG00000000661)	Cdk20 (ENSMAUG00000001239)	Fam240b (ENSMAUG00000003441)	Cntnap3 (ENSMAUG00000002315)	Spata31 (ENSMAUG00000018558)	Spata31d1c (ENSMAUG00000020041)	Prss47 (ENSMAUG00000001035)	Mfsd14b (ENSMAUG00000001438)
Chinese hamster chok1gshd	MODERN SPECIES	317	ENSCGRG00001015895	Ctsj (ENSCGRG00001024764)	Ctsq (ENSCGRG00001002399)	Cts6 (ENSCGRG00001022925)	Cts8 (ENSCGRG00001013704)	Fbp2 (ENSCGRG00001022515)	Fbp1 (ENSCGRG00001009150)	Aopep (ENSCGRG00001012713)	Fancc (ENSCGRG00001013491)	Ptch1 (ENSCGRG00001010176)	ENSCGRG00001008618	ENSCGRG00001022738	Hsd17b3 (ENSCGRG00001009870)	Slc35d2 (ENSCGRG00001020192)	Zfp367 (ENSCGRG00001022531)	Habp4 (ENSCGRG00001025040) ##22	Cdc14b (ENSCGRG00001019066)	ENSCGRG00001002667	Prxl2c (ENSCGRG00001003859)	Ctsl (ENSCGRG00001023416)	Cdk20 (ENSCGRG00001001834)	Fam240b (ENSCGRG00001020040)	Cntnap3 (ENSCGRG00001012388)	Spata31 (ENSCGRG00001024965)	ENSCGRG00001000347	Prss47 (ENSCGRG00001011133)	Mfsd14b (ENSCGRG00001016271)	ENSCGRG00001003953	ENSCGRG00001024215	ENSCGRG00001012071
Murinae	ANCESTRAL SPECIES	21	ENSGT00940000153321.b.b.l.b.b.b.a.b.e	ENSGT00940000153321.b.b.l.b.b.b.a.a.a	ENSGT00940000153321.b.b.l.b.b.b.a.a.b	ENSGT00940000153321.b.b.l.b.b.a.a.a	ENSGT00940000153321.b.b.l.b.b.a.a.b.b	ENSGT00940000153321.b.b.l.b.b.a.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000154367.a	ENSGT00940000153321.b.b.l.a	ENSGT00940000159128	ENSGT00530000069333.a	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.a.a.a.a	ENSGT00950000183043.a.b.b.a.b.u.a.a	ENSGT00940000157345.a	ENSGT00940000156081	ENSGT01050000244828.c.b.b.b.c.b	ENSGT01100000263494.a.a.a.a.b.b
Mus	ANCESTRAL SPECIES	18	ENSGT00940000153321.b.b.l.b.b.b.a.a.a	ENSGT00940000153321.b.b.l.b.b.b.a.a.b	ENSGT00940000153321.b.b.l.b.b.a.a.a	ENSGT00940000153321.b.b.l.b.b.a.a.b.b	ENSGT00940000153321.b.b.l.b.b.a.b.a	ENSGT00940000153321.b.b.l.b.b.a.b.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000154367.a	ENSGT00940000153321.b.b.l.a	ENSGT00940000159128	ENSGT00530000069333.a	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.a.a.a.a	ENSGT00950000183043.a.b.b.a.b.u.a.a	ENSGT00940000157345.a	ENSGT00940000156081	ENSGT01050000244828.c.b.b.b.c.b	ENSGT01100000263494.a.a.a.a.b.b	ENSGT00940000162284.e.b.a	ENSGT00390000012916.t
Mus_A	ANCESTRAL SPECIES	14	ENSGT00940000153321.b.b.l.b.b.b.a.a.a	ENSGT00940000153321.b.b.l.b.b.b.a.a.b	ENSGT00940000153321.b.b.l.b.b.a.a.a	ENSGT00940000153321.b.b.l.b.b.a.a.b.b	ENSGT00940000153321.b.b.l.b.b.a.b.a	ENSGT00940000153321.b.b.l.b.b.a.b.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000153321.b.b.l.a	ENSGT00940000159128	ENSGT00530000069333.a	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.a.a.a.a	ENSGT00950000183043.a.b.b.a.b.u.a.a	ENSGT00940000157345.a	ENSGT00940000156081	ENSGT01050000244828.c.b.b.b.c.b	ENSGT01100000263494.a.a.a.a.b.b	ENSGT00940000162284.e.b.a	ENSGT00390000012916.t	ENSGT00390000005801
Ryukyu mouse	MODERN SPECIES	4	Ctsr (MGP_CAROLIEiJ_G0018624)	Cts6 (MGP_CAROLIEiJ_G0018625)	Cts8 (MGP_CAROLIEiJ_G0018626)	Cts7 (MGP_CAROLIEiJ_G0018627)	Ctsm (MGP_CAROLIEiJ_G0018628)	MGP_CAROLIEiJ_G0018629	Fbp2 (MGP_CAROLIEiJ_G0018630)	Fbp1 (MGP_CAROLIEiJ_G0018631)	Aopep (MGP_CAROLIEiJ_G0018632)	Fancc (MGP_CAROLIEiJ_G0018633)	Ptch1 (MGP_CAROLIEiJ_G0018634)	MGP_CAROLIEiJ_G0018635	Hsd17b3 (MGP_CAROLIEiJ_G0018636)	Slc35d2 (MGP_CAROLIEiJ_G0018637)	Zfp367 (MGP_CAROLIEiJ_G0018638)	Habp4 (MGP_CAROLIEiJ_G0018639) ##22	Cdc14b (MGP_CAROLIEiJ_G0018640)	Prxl2c (MGP_CAROLIEiJ_G0018641)	Ctsl (MGP_CAROLIEiJ_G0018642)	Cdk20 (MGP_CAROLIEiJ_G0018643)	Fam240b (MGP_CAROLIEiJ_G0018644)	Cntnap3 (MGP_CAROLIEiJ_G0018645)	Spata31 (MGP_CAROLIEiJ_G0018646)	Spata31d1c (MGP_CAROLIEiJ_G0018647)	Prss47 (MGP_CAROLIEiJ_G0018648)	Mfsd14b (MGP_CAROLIEiJ_G0018649)	Or14p1 (MGP_CAROLIEiJ_G0018650)	Or9s18 (MGP_CAROLIEiJ_G0018651)	Nlrp4f (MGP_CAROLIEiJ_G0018652)	Uqcrb (MGP_CAROLIEiJ_G0018653)	Mterf3 (MGP_CAROLIEiJ_G0018654)
Mus_B	ANCESTRAL SPECIES	13	ENSGT00940000153321.b.b.l.b.b.b.a.a.a	ENSGT00940000153321.b.b.l.b.b.b.a.a.b	ENSGT00940000153321.b.b.l.b.b.a.a.a	ENSGT00940000153321.b.b.l.b.b.a.a.b.b	ENSGT00940000153321.b.b.l.b.b.a.b.a	ENSGT00940000153321.b.b.l.b.b.a.b.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000153321.b.b.l.a	ENSGT00940000159128	ENSGT00530000069333.a	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.a.a.a.a	ENSGT00950000183043.a.b.b.a.b.u.a.a	ENSGT00940000157345.a	ENSGT00940000156081	ENSGT01050000244828.c.b.b.b.c.b	ENSGT01100000263494.a.a.a.a.b.b	ENSGT00940000162284.e.b.a	ENSGT00860000136162	ENSGT00940000162111.d
Mus_C	ANCESTRAL SPECIES	10	ENSGT00940000153321.b.b.l.b.b.b.a.a.a	ENSGT00940000153321.b.b.l.b.b.b.a.a.b	ENSGT00940000153321.b.b.l.b.b.a.a.a	ENSGT00940000153321.b.b.l.b.b.a.a.b.b	ENSGT00940000153321.b.b.l.b.b.a.b.a	ENSGT00940000153321.b.b.l.b.b.a.b.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000153321.b.b.l.a	ENSGT00940000159128	ENSGT00530000069333.a	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.a.a.a.a	ENSGT00950000183043.a.b.b.a.b.u.a.a	ENSGT00940000157345.a	ENSGT00940000156081	ENSGT01050000244828.c.b.b.b.c.b	ENSGT01100000263494.a.a.a.a.b.b	ENSGT00940000162284.e.b.a	ENSGT00860000136162	ENSGT00940000162111.d
spretus	MODERN SPECIES	4	Ctsr (MGP_SPRETEiJ_G0019504)	Cts6 (MGP_SPRETEiJ_G0019505)	Cts8 (MGP_SPRETEiJ_G0019506)	Cts7 (MGP_SPRETEiJ_G0019507)	Ctsm (MGP_SPRETEiJ_G0019508)	MGP_SPRETEiJ_G0019509	Fbp2 (MGP_SPRETEiJ_G0019510)	Fbp1 (MGP_SPRETEiJ_G0019511)	Aopep (MGP_SPRETEiJ_G0019512)	Fancc (MGP_SPRETEiJ_G0019513)	Ptch1 (MGP_SPRETEiJ_G0019514)	MGP_SPRETEiJ_G0019515	Hsd17b3 (MGP_SPRETEiJ_G0019516)	Slc35d2 (MGP_SPRETEiJ_G0019517)	Zfp367 (MGP_SPRETEiJ_G0019518)	Habp4 (MGP_SPRETEiJ_G0019519) ##22	Cdc14b (MGP_SPRETEiJ_G0019520)	Prxl2c (MGP_SPRETEiJ_G0019521)	Ctsl (MGP_SPRETEiJ_G0019522)	Cdk20 (MGP_SPRETEiJ_G0019523)	Fam240b (MGP_SPRETEiJ_G0019524)	Cntnap3 (MGP_SPRETEiJ_G0019525)	Spata31 (MGP_SPRETEiJ_G0019526)	Spata31d1c (MGP_SPRETEiJ_G0019527)	Prss47 (MGP_SPRETEiJ_G0019528)	Mfsd14b (MGP_SPRETEiJ_G0019529)	Or14p1 (MGP_SPRETEiJ_G0019530)	Or9s18 (MGP_SPRETEiJ_G0019531)	Gm10775 (MGP_SPRETEiJ_G0019532)	MGP_SPRETEiJ_G0019533	Uqcrb (MGP_SPRETEiJ_G0019534)
Steppe mouse	MODERN SPECIES	3039										Ptch1 (ENSMSIG00000020849)	Ercc6l2 (ENSMSIG00000021038)	ENSMSIG00000021243	Hsd17b3 (ENSMSIG00000021249)	Slc35d2 (ENSMSIG00000021264)	Zfp367 (ENSMSIG00000021336)	Habp4 (ENSMSIG00000021366) ##22	Cdc14b (ENSMSIG00000021401)	ENSMSIG00000021554	Prxl2c (ENSMSIG00000021569)	Ctsl (ENSMSIG00000021593)	Cdk20 (ENSMSIG00000021605)	Fam240b (ENSMSIG00000021651)	ENSMSIG00000021654	ENSMSIG00000021657	Cntnap3 (ENSMSIG00000021683)	ENSMSIG00000021707	Spata31 (ENSMSIG00000021723)	ENSMSIG00000021729	Spata31d1c (ENSMSIG00000021735)	ENSMSIG00000021748	Mfsd14b (ENSMSIG00000021759)
Mouse	MODERN SPECIES	4	Zfp935 (ENSMUSG00000113450)	Gm49359 (ENSMUSG00000055228)	Zfp934 (ENSMUSG00000074865)	6720489N17Rik (ENSMUSG00000072066)	Platr25 (ENSMUSG00000074863)	Gm5141 (ENSMUSG00000091183)	Fbp2 (ENSMUSG00000021456)	Fbp1 (ENSMUSG00000069805)	Aopep (ENSMUSG00000021458)	Fancc (ENSMUSG00000021461)	Ptch1 (ENSMUSG00000021466)	Ercc6l2 (ENSMUSG00000021470)	Hsd17b3 (ENSMUSG00000033122)	Slc35d2 (ENSMUSG00000033114)	Zfp367 (ENSMUSG00000044934)	Habp4 (ENSMUSG00000021476) ##22	Cdc14b (ENSMUSG00000033102)	Prxl2c (ENSMUSG00000021482)	Ctsl (ENSMUSG00000021477)	Cdk20 (ENSMUSG00000021483)	Fam240b (ENSMUSG00000096537)	Cntnap3 (ENSMUSG00000033063)	Spata31 (ENSMUSG00000056223)	Spata31d1c (ENSMUSG00000074849)	Prss47 (ENSMUSG00000090658)	Mfsd14b (ENSMUSG00000038212)	Or14p1 (ENSMUSG00000108426)	Or9s18 (ENSMUSG00000049806)	Nlrp4f (ENSMUSG00000032999)	Gm10775 (ENSMUSG00000074847)	Zfp369 (ENSMUSG00000021514)
Shrew mouse	MODERN SPECIES	7	Ctsr (MGP_PahariEiJ_G0019688)	Cts6 (MGP_PahariEiJ_G0019689)	Cts8 (MGP_PahariEiJ_G0019690)	Cts7 (MGP_PahariEiJ_G0019691)	MGP_PahariEiJ_G0019692	MGP_PahariEiJ_G0019693	Fbp2 (MGP_PahariEiJ_G0019694)	Fbp1 (MGP_PahariEiJ_G0019695)	Aopep (MGP_PahariEiJ_G0019696)	Fancc (MGP_PahariEiJ_G0019697)	Ptch1 (MGP_PahariEiJ_G0019698)	MGP_PahariEiJ_G0019699	Hsd17b3 (MGP_PahariEiJ_G0019700)	Slc35d2 (MGP_PahariEiJ_G0019701)	Zfp367 (MGP_PahariEiJ_G0019702)	Habp4 (MGP_PahariEiJ_G0019703) ##22	Cdc14b (MGP_PahariEiJ_G0019704)	Prxl2c (MGP_PahariEiJ_G0019705)	MGP_PahariEiJ_G0019706	Cdk20 (MGP_PahariEiJ_G0019707)	Fam240b (MGP_PahariEiJ_G0019708)	Cntnap3 (MGP_PahariEiJ_G0019709)	Spata31 (MGP_PahariEiJ_G0019710)	Spata31d1c (MGP_PahariEiJ_G0019711)	Prss47 (MGP_PahariEiJ_G0019712)	Mfsd14b (MGP_PahariEiJ_G0019713)	Or14p1 (MGP_PahariEiJ_G0019714)	Or9s18 (MGP_PahariEiJ_G0019715)	Nlrp4f (MGP_PahariEiJ_G0019716)	MGP_PahariEiJ_G0019717	Uqcrb (MGP_PahariEiJ_G0019718)
Rat	MODERN SPECIES	8	LOC102552000 (ENSRNOG00000070106)	LOC102552000 (ENSRNOG00000068835)	ENSRNOG00000068622	ENSRNOG00000063205	ENSRNOG00000065205	Fbp2 (ENSRNOG00000017637)	Fbp1 (ENSRNOG00000017597)	ENSRNOG00000063737	Aopep (ENSRNOG00000017505)	Fancc (ENSRNOG00000016889)	Ptch1 (ENSRNOG00000019354)	Ercc6l2 (ENSRNOG00000019175)	Hsd17b3 (ENSRNOG00000019096)	Slc35d2 (ENSRNOG00000027229)	Zfp367 (ENSRNOG00000027234)	Habp4 (ENSRNOG00000019027) ##22	Cdc14b (ENSRNOG00000018999)	Prxl2c (ENSRNOG00000018886)	Ctsl (ENSRNOG00000018566)	AABR07026797.1 (ENSRNOG00000018554)	Cdk20 (ENSRNOG00000017991)	Fam240b (ENSRNOG00000050209)	AABR07026805.2 (ENSRNOG00000040101)	Cntnap3 (ENSRNOG00000027309)	Spata31a5 (ENSRNOG00000018202)	Spata31d1c (ENSRNOG00000040116)	Prss47 (ENSRNOG00000031461)	Mfsd14b (ENSRNOG00000018227)	Or14p1 (ENSRNOG00000018489)	Or9s18 (ENSRNOG00000067756)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1726									ENSNGAG00000001462	ENSNGAG00000000772	Ptch1 (ENSNGAG00000006843)	ENSNGAG00000016174	Hsd17b3 (ENSNGAG00000015712)	Slc35d2 (ENSNGAG00000013360)	Zfp367 (ENSNGAG00000012049)	Habp4 (ENSNGAG00000011671) ##22	Cdc14b (ENSNGAG00000007537)	Prxl2c (ENSNGAG00000018224)	ENSNGAG00000016381
Lesser Egyptian jerboa	MODERN SPECIES	60	ENSJJAG00000015451	Sh3yl1 (ENSJJAG00000012955)	ENSJJAG00000002085	Mfsd14b (ENSJJAG00000019365)	ENSJJAG00000005732	ENSJJAG00000023768	Fbp2 (ENSJJAG00000022384)	Fbp1 (ENSJJAG00000010371)	Aopep (ENSJJAG00000015878)	Fancc (ENSJJAG00000001579)	Ptch1 (ENSJJAG00000016228)	ENSJJAG00000018150	Hsd17b3 (ENSJJAG00000001953)	Slc35d2 (ENSJJAG00000011235)	Zfp367 (ENSJJAG00000006992)	Habp4 (ENSJJAG00000015599) ##22	Cdc14b (ENSJJAG00000002103)	ENSJJAG00000024373	ENSJJAG00000011401	Fam240b (ENSJJAG00000019963)	Cntnap3 (ENSJJAG00000006453)	ENSJJAG00000022665	ENSJJAG00000018543	Ddx11 (ENSJJAG00000018162)	Ndufv2 (ENSJJAG00000016857)	Ankrd12 (ENSJJAG00000020013)	Twsg1 (ENSJJAG00000017095)	Ralbp1 (ENSJJAG00000017102)	Ppp4r1 (ENSJJAG00000010207)	Rab31 (ENSJJAG00000000852)	Vapa (ENSJJAG00000015092)
Lagomorpha	ANCESTRAL SPECIES	150	ENSGT00530000063675.b	ENSGT00940000156859	ENSGT00940000153424.a.b	ENSGT00940000154367.b.f.b	ENSGT00940000154367.b.f.a	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000163752	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000163051	ENSGT00940000154367.a
Rabbit	MODERN SPECIES		GOLM1 (ENSOCUG00000001999)	TUT7 (ENSOCUG00000010949)	DAPK1 (ENSOCUG00000003518)	ENSOCUG00000017008	ENSOCUG00000017854	ENSOCUG00000029172	FBP1 (ENSOCUG00000029295)	AOPEP (ENSOCUG00000000678)	FANCC (ENSOCUG00000010476)	PTCH1 (ENSOCUG00000002973)	ENSOCUG00000008778	ENSOCUG00000000442	ENSOCUG00000023971	HSD17B3 (ENSOCUG00000008531)	SLC35D2 (ENSOCUG00000008540)	ENSOCUG00000023077 ##22	ENSOCUG00000005332	PRXL2C (ENSOCUG00000013208)	ZNF782 (ENSOCUG00000029054)	ENSOCUG00000039654	CTSV (ENSOCUG00000008397)	ENSOCUG00000008405	FAM240B (ENSOCUG00000029919)	ENSOCUG00000029501	ENSOCUG00000003550	ENSOCUG00000011174	ENSOCUG00000008249	ENSOCUG00000012553	ENSOCUG00000035088	SPTLC1 (ENSOCUG00000008078)	ROR2 (ENSOCUG00000016548)
Pika	MODERN SPECIES	3878											ENSOPRG00000011647	ENSOPRG00000011670	ENSOPRG00000011683	SLC35D2 (ENSOPRG00000011700)	ZNF367 (ENSOPRG00000011725)	ENSOPRG00000011736 ##22	ENSOPRG00000011744
Tree shrew	MODERN SPECIES	1361														SLC35D2 (ENSTBEG00000001308)	ZNF367 (ENSTBEG00000002215)	ENSTBEG00000003863 ##22	ENSTBEG00000004183
Primates	ANCESTRAL SPECIES	9	ENSGT00940000164141	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000154367.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000153505.a.b.b	ENSGT00940000162764.A	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00530000069333.a	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.a.a.a.a	ENSGT00940000156081	ENSGT00550000074921	ENSGT00390000004860	ENSGT00940000157238	ENSGT00940000160986	ENSGT00940000157444
Strepsirrhini	ANCESTRAL SPECIES	8						ENSGT00940000154367.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00530000063675.b	ENSGT00390000002445	ENSGT00940000157707	ENSGT00940000155181	ENSGT00390000016025.a	ENSGT00940000161055	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488
Lemuriformes	ANCESTRAL SPECIES	66						ENSGT00940000154367.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00530000063675.b	ENSGT00390000002445	ENSGT00940000157707	ENSGT00940000155181	ENSGT00390000016025.a	ENSGT00940000161055	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488
Mouse lemur	MODERN SPECIES	1	ZNF510 (ENSMICG00000037577)	ISCA1 (ENSMICG00000043545)	TUT7 (ENSMICG00000016944)	GAS1 (ENSMICG00000046960)	ENSMICG00000008748	ENSMICG00000037750	DAPK1 (ENSMICG00000017284)	AOPEP (ENSMICG00000001153)	ENSMICG00000031188	FANCC (ENSMICG00000001158)	PTCH1 (ENSMICG00000000721)	ENSMICG00000029160	HSD17B3 (ENSMICG00000002001)	SLC35D2 (ENSMICG00000002006)	ZNF367 (ENSMICG00000038686)	HABP4 (ENSMICG00000004381) ##22	ENSMICG00000004387	ENSMICG00000016942	C9orf153 (ENSMICG00000043141)	ENSMICG00000033407	ENSMICG00000029120	ENSMICG00000026796	ENSMICG00000017724	NAA35 (ENSMICG00000032353)	ENSMICG00000029806	AGTPBP1 (ENSMICG00000009600)	NTRK2 (ENSMICG00000011656)	SLC28A3 (ENSMICG00000009916)	RMI1 (ENSMICG00000031486)	HNRNPK (ENSMICG00000015780)	C9orf64 (ENSMICG00000015776)
Lemuriformes_a	ANCESTRAL SPECIES	157						ENSGT00940000154367.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00530000063675.b	ENSGT00390000002445	ENSGT00940000157707	ENSGT00940000155181	ENSGT00390000016025.a	ENSGT00940000161055	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488
Greater bamboo lemur	MODERN SPECIES	1236									ENSPSMG00000009660	ENSPSMG00000009644	ENSPSMG00000009641	ENSPSMG00000009620	HSD17B3 (ENSPSMG00000009565)	SLC35D2 (ENSPSMG00000009490)	ZNF367 (ENSPSMG00000009447)	HABP4 (ENSPSMG00000009432) ##22	ENSPSMG00000009328
Coquerels sifaka	MODERN SPECIES	183						FBP1 (ENSPCOG00000015361)	AOPEP (ENSPCOG00000006425)	FANCC (ENSPCOG00000014570)	ENSPCOG00000004160	PTCH1 (ENSPCOG00000023287)	ENSPCOG00000026714	ENSPCOG00000011696	HSD17B3 (ENSPCOG00000024790)	SLC35D2 (ENSPCOG00000027921)	ZNF367 (ENSPCOG00000014992)	HABP4 (ENSPCOG00000019941) ##22	ENSPCOG00000021943	ENSPCOG00000025613	ENSPCOG00000013882	ENSPCOG00000008223	GOLM1 (ENSPCOG00000024941)	ENSPCOG00000015887	AGTPBP1 (ENSPCOG00000019757)	NTRK2 (ENSPCOG00000003483)	SLC28A3 (ENSPCOG00000024757)	HNRNPK (ENSPCOG00000016433)	C9orf64 (ENSPCOG00000023356)	KIF27 (ENSPCOG00000018848)	GKAP1 (ENSPCOG00000024200)	UBQLN1 (ENSPCOG00000014589)	IDNK (ENSPCOG00000027664)
Bushbaby	MODERN SPECIES	121			ENSOGAG00000003018	ENSOGAG00000033605	ENSOGAG00000001349	ENSOGAG00000002031	FBP1 (ENSOGAG00000003020)	AOPEP (ENSOGAG00000003291)	FANCC (ENSOGAG00000003295)	PTCH1 (ENSOGAG00000003103)	ENSOGAG00000003146	HSD17B3 (ENSOGAG00000004332)	SLC35D2 (ENSOGAG00000004333)	ZNF367 (ENSOGAG00000004337)	ENSOGAG00000031050	HABP4 (ENSOGAG00000007712) ##22	ENSOGAG00000007715	GOLM1 (ENSOGAG00000003436)	NAA35 (ENSOGAG00000003430)	ENSOGAG00000029118	ENSOGAG00000024497	AGTPBP1 (ENSOGAG00000008213)	NTRK2 (ENSOGAG00000006130)	SLC28A3 (ENSOGAG00000002566)	RMI1 (ENSOGAG00000016834)	HNRNPK (ENSOGAG00000007478)	C9orf64 (ENSOGAG00000034807)	KIF27 (ENSOGAG00000005485)	ENSOGAG00000029263	GKAP1 (ENSOGAG00000001555)	UBQLN1 (ENSOGAG00000012947)
Haplorrhini	ANCESTRAL SPECIES	57							ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000153505.a.b.b	ENSGT00940000162764.A	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00530000069333.a	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.a.a.a.a	ENSGT00940000163669	ENSGT00940000163284
Simiiformes	ANCESTRAL SPECIES	37							ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000153505.a.b.b	ENSGT00940000162764.A	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00530000069333.a	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.a.a.a.a	ENSGT00940000163669	ENSGT00940000163284	ENSGT00940000156081
Catarrhini	ANCESTRAL SPECIES	13			ENSGT00550000076453	ENSGT00950000182894.B	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000163752	ENSGT00490000044166	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950.h	ENSGT00510000048363	ENSGT00940000153505.a.b.b	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00530000069333.a	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.a.a.a.a	ENSGT00940000163669	ENSGT00940000163284	ENSGT00950000183014.f.b.a.a.t.g.b.b	ENSGT00940000156081	ENSGT00410000025793.b.t	ENSGT00940000163169	ENSGT00390000004113
Cercopithecidae	ANCESTRAL SPECIES	9	ENSGT00910000147621	ENSGT00550000076453	ENSGT00950000182894.B	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00950000182967.a.a.a.a.b.a.g.b.b	ENSGT00940000159011	ENSGT00940000163752	ENSGT00490000044166	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950.h	ENSGT00510000048363.f	ENSGT00940000153505.a.b.b	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00530000069333.a	ENSGT00940000160228	ENSGT00940000163669	ENSGT00390000013988	ENSGT00950000183043.a.b.b.a.a.a.a.a.a	ENSGT00940000163284	ENSGT00950000183014.f.b.a.a.t.g.b.b	ENSGT00940000156081	ENSGT00410000025793.b.t	ENSGT00940000163169
Cercopithecinae	ANCESTRAL SPECIES	12	ENSGT00910000147621	ENSGT00550000076453	ENSGT00950000182894.B	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00950000182967.a.a.a.a.b.a.g.b.b	ENSGT00940000159011	ENSGT00940000163752	ENSGT00490000044166	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950.h	ENSGT00510000048363.f	ENSGT00940000153505.a.b.b	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00940000163510.D	ENSGT00910000147193	ENSGT00940000164347	ENSGT00530000069333.a	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.a.a.a.a	ENSGT00940000163669	ENSGT00940000163284	ENSGT00950000183014.f.b.a.a.t.g.b.b	ENSGT00940000156081
Cercopithecinae_a	ANCESTRAL SPECIES	12	ENSGT00910000147621	ENSGT00550000076453	ENSGT00950000182894.B	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00950000182967.a.a.a.a.b.a.g.b.b	ENSGT00940000159011	ENSGT00940000163752	ENSGT00490000044166	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950.h	ENSGT00510000048363.f	ENSGT00940000153505.a.b.b	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00940000163510.B	ENSGT00940000164347	ENSGT00530000069333.a	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.a.a.a.a.a.a	ENSGT00940000163669	ENSGT00910000147042	ENSGT00910000147065	ENSGT00390000013988	ENSGT00950000183043.a.b.b.a.a.a.a.a.a.a.b
Cercopithecinae_b	ANCESTRAL SPECIES	7				ENSGT00550000076453	ENSGT00950000182894.B	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00950000182967.a.a.a.a.b.a.g.b.b	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950.h	ENSGT00510000048363.e.b	ENSGT00510000048363.f	ENSGT00940000153505.a.b.b	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00940000163510.B	ENSGT00940000164347	ENSGT00530000069333.a	ENSGT00940000160228.x	ENSGT00940000163669	ENSGT00950000183043.a.b.b.a.a.a.a.a.a.a.b	ENSGT00940000163284	ENSGT00950000183014.f.b.a.a.t.g.b.b	ENSGT01030000235462.f
Olive baboon	MODERN SPECIES	4					ENSPANG00000046722	TEKT4 (ENSPANG00000024649)	FBP2 (ENSPANG00000024650)	AOPEP (ENSPANG00000024652)	FANCC (ENSPANG00000024653)	ENSPANG00000042015	PTCH1 (ENSPANG00000024654)	ERCC6L2 (ENSPANG00000024647)	HSD17B3 (ENSPANG00000024646)	SLC35D2 (ENSPANG00000024634)	ZNF367 (ENSPANG00000033224)	HABP4 (ENSPANG00000024636) ##22	ENSPANG00000024637	PRXL2C (ENSPANG00000049957)	ZNF782 (ENSPANG00000029757)	CTSV (ENSPANG00000038323)	ENSPANG00000038692 ##7	ENSPANG00000024642	ENSPANG00000042937	FAM240B (ENSPANG00000049907)	ENSPANG00000024641	ENSPANG00000042828	ENSPANG00000022870	ZNF658 (ENSPANG00000024644)	ENSPANG00000042402	MFSD14B (ENSPANG00000024686)	ENSPANG00000024688
Cercopithecinae_d	ANCESTRAL SPECIES	108				ENSGT00550000076453	ENSGT00950000182894.B	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00950000182967.a.a.a.a.b.a.g.b.b	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950.h	ENSGT00510000048363.e.a.a	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT01050000245888.a	ENSGT00530000069333.a	ENSGT00940000160228.x	ENSGT00940000163669	ENSGT00940000163284	ENSGT00950000183014.f.b.a.a.t.g.b.b	ENSGT00940000163510.D	ENSGT00940000156081	ENSGT01070000253921	ENSGT00410000025793.b.t	ENSGT00940000163169
Drill	MODERN SPECIES	551				ENSMLEG00000033236	TEKT4 (ENSMLEG00000029443)	FBP2 (ENSMLEG00000032747)	FBP1 (ENSMLEG00000028419)	AOPEP (ENSMLEG00000032273)	FANCC (ENSMLEG00000028792)	ENSMLEG00000029290	PTCH1 (ENSMLEG00000033804)	ENSMLEG00000019530	HSD17B3 (ENSMLEG00000027057)	SLC35D2 (ENSMLEG00000038387)	ZNF367 (ENSMLEG00000038378)	HABP4 (ENSMLEG00000042696) ##22	ENSMLEG00000033594	ENSMLEG00000028306	ENSMLEG00000038053	ZNF510 (ENSMLEG00000029215)	ZNF782 (ENSMLEG00000033526)	CTSV (ENSMLEG00000024018)
Sooty mangabey	MODERN SPECIES	109					ENSCATG00000034400	TEKT4 (ENSCATG00000015986)	FBP2 (ENSCATG00000033535)	FBP1 (ENSCATG00000040445)	AOPEP (ENSCATG00000031331)	FANCC (ENSCATG00000030963)	PTCH1 (ENSCATG00000033231)	ERCC6L2 (ENSCATG00000039681)	HSD17B3 (ENSCATG00000035198)	SLC35D2 (ENSCATG00000036124)	ZNF367 (ENSCATG00000042183)	HABP4 (ENSCATG00000040518) ##22	ENSCATG00000021520	ENSCATG00000037256	ENSCATG00000034172	ZNF782 (ENSCATG00000015893)	CTSV (ENSCATG00000037585)	ANKRD18B (ENSCATG00000027085)	FAM240B (ENSCATG00000044157)	ENSCATG00000035993	ZNF658 (ENSCATG00000032510)	ENSCATG00000019926	ENSCATG00000019880	ENSCATG00000030028	ZNF484 (ENSCATG00000029970)	ENSCATG00000038654	ENSCATG00000031931
Macaca	ANCESTRAL SPECIES	10	ENSGT00910000147621	ENSGT00550000076453	ENSGT00950000182894.B	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00950000182967.a.a.a.a.b.a.g.b.b	ENSGT00940000159011	ENSGT00940000163752	ENSGT00490000044166	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950.h	ENSGT00510000048363.f	ENSGT00940000153505.a.b.b	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00940000163510.B	ENSGT00940000164347	ENSGT00530000069333.a	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.a.a.a.a.a.a	ENSGT00940000163669	ENSGT00910000147042	ENSGT00910000147065	ENSGT00390000013988	ENSGT00950000183043.a.b.b.a.a.a.a.a.a.a.b
Pig-tailed macaque	MODERN SPECIES	272		ENSMNEG00000036596	ENSMNEG00000031636	TEKT4 (ENSMNEG00000035371)	FBP2 (ENSMNEG00000029604)	FBP1 (ENSMNEG00000028215)	AOPEP (ENSMNEG00000042607)	FANCC (ENSMNEG00000029159)	ENSMNEG00000044125	PTCH1 (ENSMNEG00000038967)	ENSMNEG00000033696	ENSMNEG00000035630	HSD17B3 (ENSMNEG00000031910)	SLC35D2 (ENSMNEG00000039536)	ZNF367 (ENSMNEG00000036929)	HABP4 (ENSMNEG00000031443) ##22	ENSMNEG00000041847	PRXL2C (ENSMNEG00000037463)	ZNF510 (ENSMNEG00000042087)	ZNF782 (ENSMNEG00000021217)	CTSV (ENSMNEG00000023935)	ENSMNEG00000042029	FAM240B (ENSMNEG00000038933)	ENSMNEG00000032990	ZNF658 (ENSMNEG00000042531)	ENSMNEG00000040742	ENSMNEG00000016365	ENSMNEG00000030451	ENSMNEG00000031024	ZNF484 (ENSMNEG00000042400)	ENSMNEG00000037772
Macaca_a	ANCESTRAL SPECIES	10			ENSGT00550000076453	ENSGT00950000182894.B	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00950000182967.a.a.a.a.b.a.g.b.b	ENSGT00940000159011	ENSGT00940000163752	ENSGT00940000166143.A.a.b.a.b.b	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950.h	ENSGT00510000048363.f	ENSGT00940000153505.a.b.b	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00940000163510.B	ENSGT00940000164347	ENSGT01050000245888.a	ENSGT00530000069333.a	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.a.a.a.a.a.a	ENSGT00940000163669	ENSGT00940000163284	ENSGT01100000263493.a.b.a.a.a.a.a.a.a.b.a.a.b.b ##28	ENSGT00940000163510.D
Rhesus	MODERN SPECIES	6						FBP2 (ENSMMUG00000022535)	FBP1 (ENSMMUG00000022536)	AOPEP (ENSMMUG00000008298)	FANCC (ENSMMUG00000008299)	PTCH1 (ENSMMUG00000002634)	ERCC6L2 (ENSMMUG00000011787)	ENSMMUG00000060197	HSD17B3 (ENSMMUG00000007990)	SLC35D2 (ENSMMUG00000007992)	ZNF367 (ENSMMUG00000060597)	HABP4 (ENSMMUG00000011369) ##22	CDC14B (ENSMMUG00000005997)	PRXL2C (ENSMMUG00000008295)	ZNF510 (ENSMMUG00000064034)	ZNF782 (ENSMMUG00000041328)	CTSV (ENSMMUG00000022971)	ENSMMUG00000008466	ENSMMUG00000052868	FAM240B (ENSMMUG00000059648)	ENSMMUG00000050773	ENSMMUG00000016712	ZNF658 (ENSMMUG00000007614)	ENSMMUG00000038652	ZNF484 (ENSMMUG00000002396)	ENSMMUG00000056934	ENSMMUG00000049485
Crab-eating macaque	MODERN SPECIES	6	FBP2 (ENSMFAG00000025800)	FBP1 (ENSMFAG00000033213)	ENSMFAG00000065386	ENSMFAG00000047226	ENSMFAG00000061577	AOPEP (ENSMFAG00000003845)	ENSMFAG00000061994	FANCC (ENSMFAG00000034968)	ENSMFAG00000030351	PTCH1 (ENSMFAG00000031893)	ERCC6L2 (ENSMFAG00000043281)	ENSMFAG00000059381	HSD17B3 (ENSMFAG00000033598)	SLC35D2 (ENSMFAG00000000700)	ZNF367 (ENSMFAG00000056608)	HABP4 (ENSMFAG00000034124) ##22	ENSMFAG00000041085	PRXL2C (ENSMFAG00000053521)	ZNF510 (ENSMFAG00000012154)	ZNF782 (ENSMFAG00000003714)	CTSV (ENSMFAG00000035644)	ENSMFAG00000038775	ENSMFAG00000063142	ENSMFAG00000059433	ENSMFAG00000039289	FAM240B (ENSMFAG00000060866)	ENSMFAG00000058584	ENSMFAG00000005812	ENSMFAG00000002532	ENSMFAG00000054905	ZNF658 (ENSMFAG00000030164)
Vervet Monkey	MODERN SPECIES	3						TEKT4 (ENSCSAG00000006380)	FBP2 (ENSCSAG00000006385)	FBP1 (ENSCSAG00000006399)	AOPEP (ENSCSAG00000006410)	FANCC (ENSCSAG00000006433)	PTCH1 (ENSCSAG00000006537)	ERCC6L2 (ENSCSAG00000006596)	HSD17B3 (ENSCSAG00000006626)	SLC35D2 (ENSCSAG00000006682)	ZNF367 (ENSCSAG00000006700)	HABP4 (ENSCSAG00000006711) ##22	ENSCSAG00000006736	PRXL2C (ENSCSAG00000006764)	ENSCSAG00000006782	CTSV (ENSCSAG00000006790)	ENSCSAG00000006794	ENSCSAG00000006901	ENSCSAG00000006953	ZNF658 (ENSCSAG00000006965)	ZNF484 (ENSCSAG00000006974)	ENSCSAG00000006981	ANKRD18B (ENSCSAG00000006989)	MFSD14B (ENSCSAG00000006995)	ENSCSAG00000007011	ZNF169 (ENSCSAG00000007022)	PTPDC1 (ENSCSAG00000007033)
Rhinopithecus	ANCESTRAL SPECIES	248	ENSGT00910000147621	ENSGT00550000076453	ENSGT00950000182894.B	ENSGT00390000013132.q.a.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00950000182967.a.a.a.a.b.a.g.b.b	ENSGT00940000159011	ENSGT00490000044166	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950.h	ENSGT00510000048363.f	ENSGT00940000153505.a.b.b	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00530000069333.a	ENSGT00940000160228
Black snub-nosed monkey	MODERN SPECIES	377	TEKT4 (ENSRBIG00000036885)	ENSRBIG00000035982	FBP2 (ENSRBIG00000029833)	FBP1 (ENSRBIG00000034787)	ENSRBIG00000037014	AOPEP (ENSRBIG00000035706)	ENSRBIG00000033464	FANCC (ENSRBIG00000044845)	PTCH1 (ENSRBIG00000029681)	ENSRBIG00000043857	ENSRBIG00000018434	HSD17B3 (ENSRBIG00000036582)	SLC35D2 (ENSRBIG00000034500)	ZNF367 (ENSRBIG00000031984)	ENSRBIG00000013156	HABP4 (ENSRBIG00000042343) ##22	ENSRBIG00000040088	ENSRBIG00000027628	ZNF510 (ENSRBIG00000038910)	ZNF782 (ENSRBIG00000044941)	CTSV (ENSRBIG00000038849)	FAM240B (ENSRBIG00000039695)	ENSRBIG00000032664
Golden snub-nosed monkey	MODERN SPECIES	3252													HSD17B3 (ENSRROG00000002674)	SLC35D2 (ENSRROG00000013075)	ZNF367 (ENSRROG00000029683)	HABP4 (ENSRROG00000039635) ##22	ENSRROG00000036107	PRXL2C (ENSRROG00000036920)	ZNF510 (ENSRROG00000037276)
Hominoidea	ANCESTRAL SPECIES	19		ENSGT00910000147621	ENSGT00950000182894.B	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00390000013091.p	ENSGT00940000159011	ENSGT00940000163752	ENSGT00490000044166	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950.g.a	ENSGT00510000048363	ENSGT00950000183077.a.a.a.a.a.b.b.a.b.a.a	ENSGT00940000153505.a.b.b	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00940000163510.D	ENSGT00940000153246.a.a.b	ENSGT00940000153246.b	ENSGT00890000139482	ENSGT00940000158695	ENSGT00390000016307	ENSGT00390000001733	ENSGT00390000002721	ENSGT00940000162270
Gibbon	MODERN SPECIES	10	ENSNLEG00000034642	ENSNLEG00000032096	TEKT4 (ENSNLEG00000016708)	FBP2 (ENSNLEG00000016721)	FBP1 (ENSNLEG00000016727)	AOPEP (ENSNLEG00000016734)	FANCC (ENSNLEG00000016749)	ENSNLEG00000010465	PTCH1 (ENSNLEG00000016755)	ENSNLEG00000032943	ENSNLEG00000016784	HSD17B3 (ENSNLEG00000032342)	SLC35D2 (ENSNLEG00000016807)	ENSNLEG00000016813	ENSNLEG00000029121	HABP4 (ENSNLEG00000016819) ##22	CDC14B (ENSNLEG00000016822)	PRXL2C (ENSNLEG00000036194)	ENSNLEG00000027861	ZNF510 (ENSNLEG00000016838)	ZNF782 (ENSNLEG00000016845)	ENSNLEG00000018342	CTSV (ENSNLEG00000016847)	ENSNLEG00000029601	ENSNLEG00000016858	CCDC180 (ENSNLEG00000016862)	TDRD7 (ENSNLEG00000016885)	TMOD1 (ENSNLEG00000016899)	TSTD2 (ENSNLEG00000016904)	NCBP1 (ENSNLEG00000016909)	ENSNLEG00000031602
Hominidae	ANCESTRAL SPECIES	10	ENSGT00390000004113	ENSGT00940000163169	ENSGT00410000025793.b.t	ENSGT00940000156081	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00390000013091.p	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000163752	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950.g.a	ENSGT00510000048363	ENSGT00950000183077.a.a.a.a.a.b.b.a.b.a.a	ENSGT00940000153505.a.b.b	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00940000163510.D	ENSGT00940000153246.a.a.b	ENSGT00940000153246.b	ENSGT00890000139482	ENSGT00940000158695	ENSGT00390000016307	ENSGT00390000001733	ENSGT00390000002721	ENSGT00940000162270
Orangutan	MODERN SPECIES	22	ENSPPYG00000019397	MFSD14B (ENSPPYG00000019399)	ENSPPYG00000019401	ENSPPYG00000019046	ENSPPYG00000035462	FBP2 (ENSPPYG00000019404)	FBP1 (ENSPPYG00000019405)	AOPEP (ENSPPYG00000019407)	FANCC (ENSPPYG00000019408)	ENSPPYG00000037532	PTCH1 (ENSPPYG00000019409)	ERCC6L2 (ENSPPYG00000019412)	HSD17B3 (ENSPPYG00000019414)	SLC35D2 (ENSPPYG00000019415)	ZNF367 (ENSPPYG00000019416)	HABP4 (ENSPPYG00000029705) ##22	CDC14B (ENSPPYG00000019417)	PRXL2C (ENSPPYG00000019418)	ZNF510 (ENSPPYG00000040706)	ZNF782 (ENSPPYG00000019420)	CTSV (ENSPPYG00000019421)	ENSPPYG00000033114	CCDC180 (ENSPPYG00000019422)	TDRD7 (ENSPPYG00000019423)	TMOD1 (ENSPPYG00000019424)	TSTD2 (ENSPPYG00000019425)	NCBP1 (ENSPPYG00000019426)	XPA (ENSPPYG00000019427)	FOXE1 (ENSPPYG00000019428)	TRMO (ENSPPYG00000019429)	HEMGN (ENSPPYG00000038384)
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	10	ENSGT00940000163169	ENSGT00410000025793.b.t	ENSGT00940000156081	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00390000013091.p	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000153336.e.a.a.a.a.e	ENSGT00940000163752	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950.g.a	ENSGT00510000048363.h.a	ENSGT00950000183077.a.a.a.a.a.b.b.a.b.a.a	ENSGT00510000048363.g	ENSGT00940000153505.a.b.b	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00940000163510.D	ENSGT00940000153246.b	ENSGT00890000139482	ENSGT00940000158695	ENSGT00390000016307	ENSGT00390000001733	ENSGT00390000002721	ENSGT00940000162270
Gorilla	MODERN SPECIES	22	ZNF169 (ENSGGOG00000025313)	ENSGGOG00000009983	ENSGGOG00000008048	MFSD14B (ENSGGOG00000008483)	FBP2 (ENSGGOG00000005665)	FBP1 (ENSGGOG00000005671)	AOPEP (ENSGGOG00000005975)	FANCC (ENSGGOG00000005983)	ENSGGOG00000040052	PTCH1 (ENSGGOG00000008123)	ENSGGOG00000002705	ENSGGOG00000004382	HSD17B3 (ENSGGOG00000002825)	SLC35D2 (ENSGGOG00000007499)	ZNF367 (ENSGGOG00000012699)	HABP4 (ENSGGOG00000012317) ##22	CDC14B (ENSGGOG00000008986)	ENSGGOG00000036718	ZNF510 (ENSGGOG00000002140)	ZNF782 (ENSGGOG00000013745)	CTSV (ENSGGOG00000024642)	ENSGGOG00000041208	ENSGGOG00000025728	CCDC180 (ENSGGOG00000012429)	TDRD7 (ENSGGOG00000015269)	TMOD1 (ENSGGOG00000001369)	TSTD2 (ENSGGOG00000001374)	NCBP1 (ENSGGOG00000001376)	XPA (ENSGGOG00000001381)	ENSGGOG00000003735	TRMO (ENSGGOG00000007683)
Homo/Pan group	ANCESTRAL SPECIES	16	ENSGT00940000163169	ENSGT00410000025793.b.t	ENSGT00940000156081	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00390000013091.p	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000153336.e.a.a.a.a.e	ENSGT00940000163752	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950.g.a	ENSGT00510000048363.g	ENSGT00950000183077.a.a.a.a.a.b.b.a.b.a.a	ENSGT00940000153505.a.b.b	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00940000163510.D	ENSGT00940000153246.b	ENSGT00890000139482	ENSGT00940000158695	ENSGT00390000016307	ENSGT00390000001733	ENSGT00390000002721	ENSGT00940000162270	ENSGT00390000004643
Human	MODERN SPECIES	21	PHF2 (ENSG00000197724)	BARX1 (ENSG00000131668)	PTPDC1 (ENSG00000158079)	ZNF169 (ENSG00000175787)	NUTM2F (ENSG00000130950)	MFSD14B (ENSG00000148110)	FBP2 (ENSG00000130957)	FBP1 (ENSG00000165140)	AOPEP (ENSG00000148120)	FANCC (ENSG00000158169)	PTCH1 (ENSG00000185920)	ERCC6L2 (ENSG00000182150)	HSD17B3 (ENSG00000130948)	SLC35D2 (ENSG00000130958)	ZNF367 (ENSG00000165244)	HABP4 (ENSG00000130956) ##22	CDC14B (ENSG00000081377)	PRXL2C (ENSG00000158122)	ZNF510 (ENSG00000081386)	ZNF782 (ENSG00000196597)	NUTM2G (ENSG00000188152)	CTSV (ENSG00000136943)	CCDC180 (ENSG00000197816)	TDRD7 (ENSG00000196116)	TMOD1 (ENSG00000136842)	TSTD2 (ENSG00000136925)	NCBP1 (ENSG00000136937)	XPA (ENSG00000136936)	FOXE1 (ENSG00000178919)	TRMO (ENSG00000136932)	HEMGN (ENSG00000136929)
Pan	ANCESTRAL SPECIES	18	ENSGT00390000004113	ENSGT00940000163169	ENSGT00410000025793.b.t	ENSGT00940000156081	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00390000013091.p	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000153336.e.a.a.a.a.e	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950.g.a	ENSGT00510000048363.g	ENSGT00940000155950.g.b.c	ENSGT00510000048363.h.a	ENSGT00950000183077.a.a.a.a.a.b.b.a.b.a.a	ENSGT00940000153505.a.b.b	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00940000163510.D	ENSGT00940000153246.b	ENSGT00890000139482	ENSGT00940000158695	ENSGT00390000016307	ENSGT00390000001733	ENSGT00390000002721
Chimpanzee	MODERN SPECIES	22	ENSPTRG00000041325	MFSD14B (ENSPTRG00000021134)	FBP2 (ENSPTRG00000021136)	FBP1 (ENSPTRG00000021138)	AOPEP (ENSPTRG00000021139)	FANCC (ENSPTRG00000021140)	ENSPTRG00000039664	ENSPTRG00000049213	PTCH1 (ENSPTRG00000046951)	ERCC6L2 (ENSPTRG00000048689)	ENSPTRG00000043521	HSD17B3 (ENSPTRG00000021150)	SLC35D2 (ENSPTRG00000021151)	ZNF367 (ENSPTRG00000021153)	ENSPTRG00000046335	HABP4 (ENSPTRG00000021154) ##22	CDC14B (ENSPTRG00000021155)	PRXL2C (ENSPTRG00000021156)	ENSPTRG00000044248	ZNF510 (ENSPTRG00000023307)	ZNF782 (ENSPTRG00000021157)	ENSPTRG00000021132	ENSPTRG00000021159	CTSV (ENSPTRG00000002675)	ENSPTRG00000029267	ENSPTRG00000049659	CCDC180 (ENSPTRG00000021162)	TDRD7 (ENSPTRG00000022912)	TMOD1 (ENSPTRG00000021165)	TSTD2 (ENSPTRG00000021166)	NCBP1 (ENSPTRG00000021167)
Bonobo	MODERN SPECIES	22	ENSPPAG00000028799	PTPDC1 (ENSPPAG00000036709)	ZNF169 (ENSPPAG00000037304)	MFSD14B (ENSPPAG00000025011)	FBP2 (ENSPPAG00000034055)	FBP1 (ENSPPAG00000042827)	AOPEP (ENSPPAG00000028823)	FANCC (ENSPPAG00000037232)	ENSPPAG00000033158	PTCH1 (ENSPPAG00000042033)	ENSPPAG00000035061	ENSPPAG00000042252	HSD17B3 (ENSPPAG00000040278)	ENSPPAG00000039175	ZNF367 (ENSPPAG00000035864)	HABP4 (ENSPPAG00000031320) ##22	ENSPPAG00000039845	ENSPPAG00000038888	ENSPPAG00000033645	ZNF510 (ENSPPAG00000038934)	ZNF782 (ENSPPAG00000040069)	CTSV (ENSPPAG00000041013)	ENSPPAG00000033776	CCDC180 (ENSPPAG00000009246)	TDRD7 (ENSPPAG00000041009)	TMOD1 (ENSPPAG00000028497)	TSTD2 (ENSPPAG00000028289)	NCBP1 (ENSPPAG00000026462)	XPA (ENSPPAG00000040453)	TRMO (ENSPPAG00000013453)	HEMGN (ENSPPAG00000034879)
Platyrrhini	ANCESTRAL SPECIES	61							ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00940000153505.a.b.b	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00530000069333.a
Mas night monkey	MODERN SPECIES	953	KANK1 (ENSANAG00000025213)	DOCK8 (ENSANAG00000027539)	ENSANAG00000032441	ENSANAG00000032497	FBP2 (ENSANAG00000031346)	ENSANAG00000026785	AOPEP (ENSANAG00000030033)	ENSANAG00000010088	FANCC (ENSANAG00000028572)	ENSANAG00000030325	PTCH1 (ENSANAG00000029389)	ERCC6L2 (ENSANAG00000023092)	HSD17B3 (ENSANAG00000032106)	SLC35D2 (ENSANAG00000028518)	ZNF367 (ENSANAG00000033540)	HABP4 (ENSANAG00000035090) ##22	ENSANAG00000024265	ENSANAG00000035688	ENSANAG00000020550	PRXL2C (ENSANAG00000034602)	ENSANAG00000023712	ENSANAG00000023875	ENSANAG00000037094	ZNF510 (ENSANAG00000030522)	ZNF782 (ENSANAG00000024951)	ENSANAG00000029914	CTSV (ENSANAG00000025241)	FAM240B (ENSANAG00000027625)	ENSANAG00000019400	ENSANAG00000023167	ENSANAG00000034297
Cebidae	ANCESTRAL SPECIES	52							ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT01010000222530.b.a.a	ENSGT00510000048363
Marmoset	MODERN SPECIES		ENSCJAG00000055424	ERCC6L2 (ENSCJAG00000043554)	PTCH1 (ENSCJAG00000021318)	FANCC (ENSCJAG00000021324)	AOPEP (ENSCJAG00000021327)	FBP1 (ENSCJAG00000041493)	FBP2 (ENSCJAG00000021334)	ENSCJAG00000075286	ENSCJAG00000076862	ENSCJAG00000067353	CTSV (ENSCJAG00000046004)	ENSCJAG00000064535	ENSCJAG00000047796	SLC35D2 (ENSCJAG00000012556)	ENSCJAG00000040778	HABP4 (ENSCJAG00000012589) ##22	ENSCJAG00000012598	ENSCJAG00000061833	PRXL2C (ENSCJAG00000076685)	ZNF484 (ENSCJAG00000005536)	ENSCJAG00000084670	GAS1 (ENSCJAG00000062210)	ENSCJAG00000074564	DAPK1 (ENSCJAG00000005569)	ENSCJAG00000005635	ENSCJAG00000072229	ENSCJAG00000051243	DIRAS2 (ENSCJAG00000039042)	ENSCJAG00000062354	SYK (ENSCJAG00000005666)	ENSCJAG00000005695
Cebidae_a	ANCESTRAL SPECIES	85							ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT01010000222530.b.a.a	ENSGT00510000048363	ENSGT00940000160228	ENSGT00390000006208.b.b	ENSGT00530000069333.a	ENSGT00940000154367.a	ENSGT01050000244891.B.i.b	ENSGT00940000163051	ENSGT00940000154367.b.g	ENSGT00940000153424.a.b	ENSGT00490000043385.u.b	ENSGT00940000164155	ENSGT00530000063675.b	ENSGT00390000002445
Capuchin	MODERN SPECIES	196				FBP2 (ENSCCAG00000022182)	FBP1 (ENSCCAG00000005125)	AOPEP (ENSCCAG00000029936)	FANCC (ENSCCAG00000026638)	ENSCCAG00000034109	ENSCCAG00000029017	PTCH1 (ENSCCAG00000021603)	ENSCCAG00000026980	HSD17B3 (ENSCCAG00000032712)	SLC35D2 (ENSCCAG00000019726)	ZNF367 (ENSCCAG00000011083)	ENSCCAG00000025778	HABP4 (ENSCCAG00000029535) ##22	ENSCCAG00000026671	ENSCCAG00000004738	ENSCCAG00000030771	PRXL2C (ENSCCAG00000021330)	ENSCCAG00000031010	ENSCCAG00000032829	ENSCCAG00000025019	ENSCCAG00000036180	ENSCCAG00000021897	ENSCCAG00000023018	ENSCCAG00000037426	ENSCCAG00000027284	FAM240B (ENSCCAG00000037201)	CTSV (ENSCCAG00000030717)	ENSCCAG00000023112
Bolivian squirrel monkey	MODERN SPECIES	140			ENSSBOG00000027861	ENSSBOG00000031000	FBP2 (ENSSBOG00000025654)	FBP1 (ENSSBOG00000028185)	AOPEP (ENSSBOG00000001088)	FANCC (ENSSBOG00000020880)	ENSSBOG00000026970	PTCH1 (ENSSBOG00000028218)	ENSSBOG00000022156	ERCC6L2 (ENSSBOG00000027390)	HSD17B3 (ENSSBOG00000028438)	SLC35D2 (ENSSBOG00000031140)	ZNF367 (ENSSBOG00000023140)	HABP4 (ENSSBOG00000031480) ##22	ENSSBOG00000016229	ENSSBOG00000036373	ENSSBOG00000002057	ZNF510 (ENSSBOG00000028269)	FGD3 (ENSSBOG00000030603)	SUSD3 (ENSSBOG00000026433)	CARD19 (ENSSBOG00000019116)	NINJ1 (ENSSBOG00000027212)	ENSSBOG00000033994	WNK2 (ENSSBOG00000025266)	ENSSBOG00000030330	ENSSBOG00000031256	FAM120A (ENSSBOG00000028151)	PHF2 (ENSSBOG00000032633)	ENSSBOG00000032959
Tarsier	MODERN SPECIES	3909																HABP4 (ENSTSYG00000012837) ##22	ENSTSYG00000012405
Laurasiatheria	ANCESTRAL SPECIES	9	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000154367.b	ENSGT00940000153321.b.b.l.a	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00390000002550	ENSGT00940000163752	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000153505.a.b.b	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00530000069333.a	ENSGT00960000189495	ENSGT00390000004113	ENSGT00940000160218	ENSGT00940000158148	ENSGT00530000063168.a.a.a	ENSGT00940000157161.b	ENSGT00940000158892.b	ENSGT00390000016408	ENSGT00390000006976
Laurasiatheria_a	ANCESTRAL SPECIES	11	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000154367.b	ENSGT00940000153321.b.b.l.a	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00390000002550	ENSGT00940000163752	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000153505.a.b.b	ENSGT00940000163051
Artiodactyla	ANCESTRAL SPECIES	7	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000154367.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00390000002550	ENSGT00940000163752	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000153505.a.b.b	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00530000069333.a	ENSGT00950000183043.a.b.b.a.a.a.a.b	ENSGT00940000163669	ENSGT00940000156081	ENSGT00940000163284	ENSGT01020000231252	ENSGT00550000074921	ENSGT00390000004860	ENSGT00390000011897	ENSGT00940000157238
Suina	ANCESTRAL SPECIES	43	ENSGT00940000164141	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000154367.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000153505.a.b.b	ENSGT00940000163051	ENSGT01030000237815	ENSGT00940000154367.a	ENSGT00530000069333.a
Pig	MODERN SPECIES	1	GAS1 (ENSSSCG00000056862)	ENSSSCG00000044562	DAPK1 (ENSSSCG00000010949)	CTSL (ENSSSCG00000010948)	FBP2 (ENSSSCG00000010947)	FBP1 (ENSSSCG00000031174)	ENSSSCG00000010943	FANCC (ENSSSCG00000033654)	PTCH1 (ENSSSCG00000027312)	ERCC6L2 (ENSSSCG00000010941)	HSD17B3 (ENSSSCG00000010937)	ENSSSCG00000010936	SLC35D2 (ENSSSCG00000039368)	ZNF367 (ENSSSCG00000028981)	ENSSSCG00000039643	HABP4 (ENSSSCG00000035956) ##22	ENSSSCG00000027557	PRXL2C (ENSSSCG00000011169)	ZNF510 (ENSSSCG00000011168)	ZNF782 (ENSSSCG00000011167)	ENSSSCG00000031186	CTSV (ENSSSCG00000011171)	FAM240B (ENSSSCG00000032993)	CYB5R1 (ENSSSCG00000010929)	ADIPOR1 (ENSSSCG00000010931)	ENSSSCG00000034258	KLHL12 (ENSSSCG00000022787)	RABIF (ENSSSCG00000053080)	ENSSSCG00000021179	KDM5B (ENSSSCG00000010928)	SYT2 (ENSSSCG00000010926)
Chacoan peccary	MODERN SPECIES	914	ENSCWAG00000009977	ISCA1 (ENSCWAG00000009931)	TUT7 (ENSCWAG00000009534)	GAS1 (ENSCWAG00000009474)	DAPK1 (ENSCWAG00000009007)	CTSL (ENSCWAG00000008949)	FBP2 (ENSCWAG00000008876)	FBP1 (ENSCWAG00000008767)	AOPEP (ENSCWAG00000008450)	FANCC (ENSCWAG00000008217)	PTCH1 (ENSCWAG00000007715)	ENSCWAG00000014530	HSD17B3 (ENSCWAG00000014305)	SLC35D2 (ENSCWAG00000014231)	ZNF367 (ENSCWAG00000014168)	HABP4 (ENSCWAG00000014055) ##22	ENSCWAG00000013731	PRXL2C (ENSCWAG00000013675)	ZNF510 (ENSCWAG00000013640)	ZNF782 (ENSCWAG00000013590)	ENSCWAG00000013557	CTSV (ENSCWAG00000013527)	FAM240B (ENSCWAG00000013490)
Artiodactyla_a	ANCESTRAL SPECIES	6	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000154367.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00390000002550	ENSGT00940000163752	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000153505.a.b.b	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00530000069333.a	ENSGT00950000183043.a.b.b.a.a.a.a.b	ENSGT00990000210271	ENSGT00940000163669	ENSGT00940000156081	ENSGT00940000163284	ENSGT01020000231252	ENSGT00550000074921	ENSGT00390000004860	ENSGT00390000011897
Artiodactyla_b	ANCESTRAL SPECIES	7	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000154367.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00390000002550	ENSGT00940000163752	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000153505.a.b.b	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00530000069333.a	ENSGT00950000183043.a.b.b.a.a.a.a.b	ENSGT00990000210271	ENSGT00940000163669	ENSGT00940000156081	ENSGT00940000163284	ENSGT01020000231252	ENSGT00550000074921	ENSGT00390000004860	ENSGT00390000011897
Cetacea	ANCESTRAL SPECIES	9	ENSGT00940000164155	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000154367.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000163752	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000153505.a.b.b.l	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00530000069333.a	ENSGT00990000210271	ENSGT00940000163669	ENSGT00940000156081	ENSGT00940000163284	ENSGT01020000231252	ENSGT00550000074921	ENSGT00390000004860	ENSGT00390000011897	ENSGT00940000157238
Blue whale	DUPLICATION
Blue whale	MODERN SPECIES	17	ISCA1 (ENSBMSG00010007642)	TUT7 (ENSBMSG00010007589)	GAS1 (ENSBMSG00010007554)	ENSBMSG00010007542	DAPK1 (ENSBMSG00010007482)	CTSL (ENSBMSG00010007445)	FBP2 (ENSBMSG00010007419)	FBP1 (ENSBMSG00010007409)	AOPEP (ENSBMSG00010007341)	FANCC (ENSBMSG00010007314)	PTCH1 (ENSBMSG00010007237)	ERCC6L2 (ENSBMSG00010007164)	HSD17B3 (ENSBMSG00010007100)	SLC35D2 (ENSBMSG00010007061)	ZNF367 (ENSBMSG00010007039)	ENSBMSG00010007005 ##22	ENSBMSG00010006860	PRXL2C (ENSBMSG00010006808)	ZNF510 (ENSBMSG00010006790)	ZNF782 (ENSBMSG00010006780)	ENSBMSG00010006767	CTSV (ENSBMSG00010006749)	ENSBMSG00010006729	FAM240B (ENSBMSG00010006714)	ENSBMSG00010006703	ENSBMSG00010006685	NINJ1 (ENSBMSG00010006670)	CARD19 (ENSBMSG00010006654)	SUSD3 (ENSBMSG00010006611)	FGD3 (ENSBMSG00010006560)	ENSBMSG00010006538
Blue whale	MODERN SPECIES	17	RCL1 (ENSBMSG00010003993)	JAK2 (ENSBMSG00010003969)	INSL6 (ENSBMSG00010003955)	ENSBMSG00010003948	PLGRKT (ENSBMSG00010003942)	CD274 (ENSBMSG00010003928)	PDCD1LG2 (ENSBMSG00010003898)	RIC1 (ENSBMSG00010003869)	ERMP1 (ENSBMSG00010003832)	MLANA (ENSBMSG00010003817)	KIAA2026 (ENSBMSG00010003802)	ENSBMSG00010003784	ENSBMSG00010003773	IL33 (ENSBMSG00010003753)	ENSBMSG00010003744	ENSBMSG00010003740 ##22	ENSBMSG00010003737	UHRF2 (ENSBMSG00010003727)	ENSBMSG00010003689	ENSBMSG00010003666	ENSBMSG00010003657	KDM4C (ENSBMSG00010003640)	DMAC1 (ENSBMSG00010003630)	ENSBMSG00010003625	PTPRD (ENSBMSG00010003108)	ENSBMSG00010002917	ENSBMSG00010002910	TYRP1 (ENSBMSG00010002890)	LURAP1L (ENSBMSG00010002885)	MPDZ (ENSBMSG00010002836)	NFIB (ENSBMSG00010001691)
Odontoceti	ANCESTRAL SPECIES	8	ENSGT00940000164155	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000154367.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000163752	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000153505.a.b.b.l	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00530000069333.a	ENSGT00940000163169	ENSGT00390000004113	ENSGT00940000160218	ENSGT00940000158148	ENSGT00530000063168.a.a.a	ENSGT00940000157161.b	ENSGT00990000214006	ENSGT00940000158892.b	ENSGT00390000016408
Odontoceti_a	ANCESTRAL SPECIES	15	ENSGT00530000063675.b	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000154367.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000163752	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000153505.a.b.b.l	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00530000069333.a	ENSGT00410000025793.b.v	ENSGT00940000163169	ENSGT00390000004113	ENSGT00940000160218	ENSGT00940000158148	ENSGT00530000063168.a.a.a	ENSGT00940000157161.b	ENSGT00990000214006	ENSGT00940000158892.b
Odontoceti_b	ANCESTRAL SPECIES	8	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000154367.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000163752	ENSGT00940000165777.a.b	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000153505.a.b.b.l	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00530000069333.a	ENSGT00410000025793.b.v	ENSGT00940000163169	ENSGT00390000004113	ENSGT00940000160218	ENSGT00940000158148	ENSGT00530000063168.a.a.a	ENSGT00940000153433.A.d	ENSGT00940000157161.b	ENSGT00990000214006
Monodontidae	ANCESTRAL SPECIES	5	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000154367.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000163752	ENSGT00940000165777.a.b	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000153505.a.b.b.l	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00410000025793.b.v	ENSGT00940000163169	ENSGT00390000004113	ENSGT00940000160218	ENSGT00940000158148	ENSGT00530000063168.a.a.a	ENSGT00940000153433.A.d	ENSGT00940000157161.b	ENSGT00990000214006	ENSGT00940000158892.b
Beluga whale	MODERN SPECIES	67	ISCA1 (ENSDLEG00000015882)	ZCCHC6 (ENSDLEG00000015900)	GAS1 (ENSDLEG00000015983)	DAPK1 (ENSDLEG00000016001)	CTSL (ENSDLEG00000016072)	FBP2 (ENSDLEG00000016121)	FBP1 (ENSDLEG00000016151)	CUNH9orf3 (ENSDLEG00000016170)	FANCC (ENSDLEG00000016231)	PTCH1 (ENSDLEG00000016270)	ERCC6L2 (ENSDLEG00000016323)	ENSDLEG00000016401	HSD17B3 (ENSDLEG00000016421)	SLC35D2 (ENSDLEG00000016514)	ZNF367 (ENSDLEG00000016540)	HABP4 (ENSDLEG00000016560) ##22	CDC14B (ENSDLEG00000016592)	AAED1 (ENSDLEG00000016639)	ZNF510 (ENSDLEG00000016656)	ZNF782 (ENSDLEG00000016675)	CTSV (ENSDLEG00000016685)
Narwhal	MODERN SPECIES	312	ISCA1 (ENSMMNG00015016402)	TUT7 (ENSMMNG00015015941)	GAS1 (ENSMMNG00015015767)	DAPK1 (ENSMMNG00015014751)	CTSL (ENSMMNG00015014701)	FBP2 (ENSMMNG00015014674)	FBP1 (ENSMMNG00015014647)	AOPEP (ENSMMNG00015014603)	FANCC (ENSMMNG00015014555)	PTCH1 (ENSMMNG00015014477)	ERCC6L2 (ENSMMNG00015014361)	ENSMMNG00015014322	HSD17B3 (ENSMMNG00015014294)	SLC35D2 (ENSMMNG00015014264)	ZNF367 (ENSMMNG00015014248)	HABP4 (ENSMMNG00015014223) ##22	ENSMMNG00015014155	PRXL2C (ENSMMNG00015014084)	ZNF510 (ENSMMNG00015014065)	ZNF782 (ENSMMNG00015014045)	CTSV (ENSMMNG00015014020)	ENSMMNG00015014007	FAM240B (ENSMMNG00015013992)	ENSMMNG00015013960	ENSMMNG00015013939	ENSMMNG00015013923	ZNF169 (ENSMMNG00015013911)	PTPDC1 (ENSMMNG00015013848)	BARX1 (ENSMMNG00015013808)	PHF2 (ENSMMNG00015013776)	FAM120A (ENSMMNG00015013750)
Vaquita	MODERN SPECIES	17	GOLM1 (ENSPSNG00000001900)	ISCA1 (ENSPSNG00000001918)	TUT7 (ENSPSNG00000001995)	GAS1 (ENSPSNG00000002141)	DAPK1 (ENSPSNG00000002210)	CTSL (ENSPSNG00000002335)	FBP2 (ENSPSNG00000002362)	FBP1 (ENSPSNG00000002403)	AOPEP (ENSPSNG00000002466)	FANCC (ENSPSNG00000002554)	PTCH1 (ENSPSNG00000002681)	ERCC6L2 (ENSPSNG00000002842)	ENSPSNG00000002912	SLC35D2 (ENSPSNG00000003036)	ZNF367 (ENSPSNG00000003095)	HABP4 (ENSPSNG00000003182) ##22	ENSPSNG00000003275	PRXL2C (ENSPSNG00000003369)	ZNF510 (ENSPSNG00000003395)	ZNF782 (ENSPSNG00000003416)	CTSV (ENSPSNG00000003453)	FAM240B (ENSPSNG00000003474)	ENSPSNG00000003540	ZNF169 (ENSPSNG00000003578)	PTPDC1 (ENSPSNG00000003627)	BARX1 (ENSPSNG00000003664)	PHF2 (ENSPSNG00000003694)	FAM120A (ENSPSNG00000003777)	ENSPSNG00000003813	WNK2 (ENSPSNG00000003927)	ENSPSNG00000004018
Sperm whale	MODERN SPECIES	20	ISCA1 (ENSPCTG00005003854)	TUT7 (ENSPCTG00005003908)	GAS1 (ENSPCTG00005004071)	ENSPCTG00005004080	DAPK1 (ENSPCTG00005004110)	ENSPCTG00005004203	FBP2 (ENSPCTG00005004259)	FBP1 (ENSPCTG00005004278)	AOPEP (ENSPCTG00005004356)	FANCC (ENSPCTG00005004565)	PTCH1 (ENSPCTG00005004684)	ERCC6L2 (ENSPCTG00005004956)	HSD17B3 (ENSPCTG00005005131)	SLC35D2 (ENSPCTG00005005284)	ZNF367 (ENSPCTG00005005358)	HABP4 (ENSPCTG00005005388) ##22	CDC14B (ENSPCTG00005005490)	PRXL2C (ENSPCTG00005005942)	ZNF510 (ENSPCTG00005005976)	ZNF782 (ENSPCTG00005006008)	ENSPCTG00005006046	ENSPCTG00005006179	ENSPCTG00005006220	FAM240B (ENSPCTG00005005079)	ENSPCTG00005005106	ENSPCTG00005005128	MFSD14B (ENSPCTG00005005170)	ZNF484 (ENSPCTG00005005203)	ENSPCTG00005005218	IARS (ENSPCTG00005005261)	NOL8 (ENSPCTG00005005594)
Pecora	ANCESTRAL SPECIES	29	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000154367.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000163752	ENSGT00940000165777.b	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00530000069333.a	ENSGT00950000183043.a.b.b.a.a.a.a.b	ENSGT00940000163284	ENSGT00550000074921	ENSGT00390000004860	ENSGT00390000011897	ENSGT00940000157238	ENSGT00940000160986	ENSGT00940000157444	ENSGT00940000159941	ENSGT01030000235189
Yarkand deer	MODERN SPECIES	7	ENSCHYG00000016910	GAS1 (ENSCHYG00000016949)	ENSCHYG00000016995	DAPK1 (ENSCHYG00000017064)	CTSL (ENSCHYG00000017720)	FBP2 (ENSCHYG00000017797)	FBP1 (ENSCHYG00000017872)	AOPEP (ENSCHYG00000017977)	FANCC (ENSCHYG00000005194)	PTCH1 (ENSCHYG00000005314)	ERCC6L2 (ENSCHYG00000005683)	ENSCHYG00000005815	HSD17B3 (ENSCHYG00000005840)	SLC35D2 (ENSCHYG00000005943)	ZNF367 (ENSCHYG00000006054)	HABP4 (ENSCHYG00000006099) ##22	ENSCHYG00000006254	PRXL2C (ENSCHYG00000006833)	ZNF782 (ENSCHYG00000006871)	CTSV (ENSCHYG00000006911)	FAM240B (ENSCHYG00000006974)	ENSCHYG00000006994	ENSCHYG00000007015	ZNF484 (ENSCHYG00000007034)	ENSCHYG00000007059	IARS1 (ENSCHYG00000007119)	NOL8 (ENSCHYG00000007435)	CENPP (ENSCHYG00000007599)	OGN (ENSCHYG00000007671)	OMD (ENSCHYG00000007702)	ASPN (ENSCHYG00000007759)
Percora_a	ANCESTRAL SPECIES	29	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000154367.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000163752	ENSGT00940000165777.b	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00530000069333.a	ENSGT00950000183043.a.b.b.a.a.a.a.b	ENSGT00940000163284	ENSGT00550000074921	ENSGT00390000004860	ENSGT00390000011897	ENSGT00940000157238	ENSGT00940000160986	ENSGT00940000157444	ENSGT00940000159941	ENSGT01030000235189
Bovidae	ANCESTRAL SPECIES	14	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000154367.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000163752	ENSGT00940000165777.b	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00530000069333.a	ENSGT00950000183043.a.b.b.a.a.a.a.b	ENSGT00940000163284	ENSGT00550000074921	ENSGT00390000004860	ENSGT00390000011897	ENSGT00940000157238	ENSGT00940000160986	ENSGT00940000157444	ENSGT00940000159941	ENSGT01030000235189
Caprinae	ANCESTRAL SPECIES	14	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000154367.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000163752	ENSGT00940000165777.b	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00530000069333.a	ENSGT00950000183043.a.b.b.a.a.a.a.b	ENSGT00940000163284	ENSGT00550000074921	ENSGT00390000004860	ENSGT00390000011897	ENSGT00940000157238	ENSGT00940000160986	ENSGT00940000157444	ENSGT00940000159941	ENSGT00390000010053
Rambouillet Sheep	MODERN SPECIES	11	C9orf153 (ENSOARG00020002920)	ISCA1 (ENSOARG00020002912)	TUT7 (ENSOARG00020002752)	DAPK1 (ENSOARG00020002680)	CTSL (ENSOARG00020002639)	FBP2 (ENSOARG00020002620)	FBP1 (ENSOARG00020002574)	AOPEP (ENSOARG00020002497)	FANCC (ENSOARG00020002435)	PTCH1 (ENSOARG00020002334)	ERCC6L2 (ENSOARG00020002268)	ENSOARG00020002258	HSD17B3 (ENSOARG00020002196)	SLC35D2 (ENSOARG00020002106)	ZNF367 (ENSOARG00020002077)	HABP4 (ENSOARG00020002042) ##22	ENSOARG00020002021	CDC14B (ENSOARG00020001763)	PRXL2C (ENSOARG00020001718)	CTSV (ENSOARG00020001702)	FAM240B (ENSOARG00020001683)	ENSOARG00020001669	ZNF484 (ENSOARG00020001616)	IARS1 (ENSOARG00020001407)	NOL8 (ENSOARG00020001357)	OGN (ENSOARG00020001335)	OMD (ENSOARG00020001323)	ASPN (ENSOARG00020001312)	ECM2 (ENSOARG00020001301)	CENPP (ENSOARG00020001265)	IPPK (ENSOARG00020001217)
Goat	MODERN SPECIES	27	ISCA1 (ENSCHIG00000015646)	TUT7 (ENSCHIG00000017690)	GAS1 (ENSCHIG00000007592)	DAPK1 (ENSCHIG00000013443)	CTSL (ENSCHIG00000020875)	FBP2 (ENSCHIG00000017472)	AOPEP (ENSCHIG00000011940)	FANCC (ENSCHIG00000021780)	ENSCHIG00000022324	PTCH1 (ENSCHIG00000013837)	ERCC6L2 (ENSCHIG00000020777)	ENSCHIG00000016622	HSD17B3 (ENSCHIG00000027090)	SLC35D2 (ENSCHIG00000020406)	ZNF367 (ENSCHIG00000020288)	HABP4 (ENSCHIG00000018392) ##22	ENSCHIG00000009780	PRXL2C (ENSCHIG00000023456)	ZNF782 (ENSCHIG00000016455)	CTSV (ENSCHIG00000008805)	FAM240B (ENSCHIG00000017288)	ENSCHIG00000025319	ZNF484 (ENSCHIG00000010357)	IARS1 (ENSCHIG00000023719)	NOL8 (ENSCHIG00000023837)	ENSCHIG00000014248	OGN (ENSCHIG00000016330)	OMD (ENSCHIG00000025168)	ASPN (ENSCHIG00000015608)	ECM2 (ENSCHIG00000017909)	IPPK (ENSCHIG00000008640)
Bovinae	ANCESTRAL SPECIES	14	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000154367.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000163752	ENSGT00940000165777.b	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00530000069333.a	ENSGT00950000183043.a.b.b.a.a.a.a.b	ENSGT00940000163284	ENSGT00550000074921	ENSGT00390000004860	ENSGT00390000011897	ENSGT00940000157238	ENSGT00940000160986	ENSGT00940000157444	ENSGT00940000159941	ENSGT01030000235189
American bison	MODERN SPECIES	2992				DAPK1 (ENSBBBG00000010880)	CTSL (ENSBBBG00000010912)	FBP2 (ENSBBBG00000010933)	FBP1 (ENSBBBG00000001945)	AOPEP (ENSBBBG00000007304)	FANCC (ENSBBBG00000011004)	PTCH1 (ENSBBBG00000001995)	ENSBBBG00000011107	ENSBBBG00000011110	HSD17B3 (ENSBBBG00000011138)	SLC35D2 (ENSBBBG00000011173)	ZNF367 (ENSBBBG00000002021)	HABP4 (ENSBBBG00000011198) ##22	ENSBBBG00000011311	PRXL2C (ENSBBBG00000011344)	ENSBBBG00000002059	ZNF782 (ENSBBBG00000002064)	CTSV (ENSBBBG00000011377)	FAM240B (ENSBBBG00000011389)	ENSBBBG00000011394	ZNF484 (ENSBBBG00000011408)	IARS1 (ENSBBBG00000011459)	NOL8 (ENSBBBG00000007305)	CENPP (ENSBBBG00000011595)	OGN (ENSBBBG00000011606)	OMD (ENSBBBG00000002138)	ASPN (ENSBBBG00000011634)	ECM2 (ENSBBBG00000011657)
Bos	ANCESTRAL SPECIES	10	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000154367.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000163752	ENSGT00940000165777.b	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00950000183198.c.a.a.a.a.c.a	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00530000069333.a	ENSGT00950000183043.a.b.b.a.a.a.a.b	ENSGT00940000163284	ENSGT00550000074921	ENSGT00390000004860	ENSGT00390000011897	ENSGT00940000157238	ENSGT00940000160986	ENSGT00940000157444	ENSGT00940000159941
Bos_b	ANCESTRAL SPECIES	3	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000154367.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT01100000263481.n.a.a.b.b.b.a.a.b.a.b	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000163752	ENSGT00940000165777.b	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00950000183198.c.a.a.a.a.c.a	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00530000069333.a	ENSGT00950000183043.a.b.b.a.a.a.a.b	ENSGT00940000163284	ENSGT00550000074921	ENSGT00390000004860	ENSGT00390000011897	ENSGT00940000157238	ENSGT00940000160986	ENSGT00940000157444	ENSGT00940000159941
Hybrid Bos Indicus	MODERN SPECIES	27	DAPK1 (ENSBIXG00005018335)	FBP2 (ENSBIXG00005007650)	CTSL (ENSBIXG00005018228)	FBP1 (ENSBIXG00005018206)	ENSBIXG00005002948	AOPEP (ENSBIXG00005018131)	FANCC (ENSBIXG00005018014)	ENSBIXG00005017978	PTCH1 (ENSBIXG00005017937)	ENSBIXG00005017780	ERCC6L2 (ENSBIXG00005017721)	ENSBIXG00005002869	HSD17B3 (ENSBIXG00005017638)	SLC35D2 (ENSBIXG00005017578)	ZNF367 (ENSBIXG00005017512)	HABP4 (ENSBIXG00005017471) ##22	ENSBIXG00005017380	ENSBIXG00005017218	ZNF782 (ENSBIXG00005017193)	CTSV (ENSBIXG00005017176)	FAM240B (ENSBIXG00005017134)	ENSBIXG00005017107	ZNF484 (ENSBIXG00005017060)	IARS1 (ENSBIXG00005002762)	NOL8 (ENSBIXG00005002688)	CENPP (ENSBIXG00005016603)	OGN (ENSBIXG00005016554)	OMD (ENSBIXG00005016523)	ASPN (ENSBIXG00005016510)	ECM2 (ENSBIXG00005005645)	BICD2 (ENSBIXG00005016438)
Cow	MODERN SPECIES	27	ENSBTAG00000053134	GAS1 (ENSBTAG00000046803)	DAPK1 (ENSBTAG00000000738)	CTSL (ENSBTAG00000000720)	FBP2 (ENSBTAG00000019554)	FBP1 (ENSBTAG00000009733)	ENSBTAG00000049470	AOPEP (ENSBTAG00000000699)	FANCC (ENSBTAG00000017195)	PTCH1 (ENSBTAG00000009903)	ERCC6L2 (ENSBTAG00000020626)	ENSBTAG00000053599	HSD17B3 (ENSBTAG00000016867)	SLC35D2 (ENSBTAG00000019939)	ZNF367 (ENSBTAG00000006587)	HABP4 (ENSBTAG00000011586) ##22	CDC14B (ENSBTAG00000011589)	PRXL2C (ENSBTAG00000020749)	ENSBTAG00000037600	ZNF782 (ENSBTAG00000008836)	CTSV (ENSBTAG00000017077)	ENSBTAG00000009764	ZNF484 (ENSBTAG00000031682)	IARS1 (ENSBTAG00000000974)	NOL8 (ENSBTAG00000018613)	CENPP (ENSBTAG00000011814)	OGN (ENSBTAG00000011824)	OMD (ENSBTAG00000011836)	ASPN (ENSBTAG00000011847)	ECM2 (ENSBTAG00000024081)	IPPK (ENSBTAG00000011859)
Bos_a	ANCESTRAL SPECIES	20	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000154367.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000165777.b	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00950000183198.c.a.a.a.a.c.a	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00530000069333.a	ENSGT00950000183043.a.b.b.a.a.a.a.b	ENSGT00940000163284	ENSGT00550000074921	ENSGT00390000004860	ENSGT00390000011897	ENSGT00940000157238	ENSGT00940000160986	ENSGT00940000157444	ENSGT00940000159941
Domestic yak	MODERN SPECIES	26	GAS1 (ENSBGRG00000005843)	ENSBGRG00000005866	ENSBGRG00000005877	DAPK1 (ENSBGRG00000005913)	FBP2 (ENSBGRG00000006288)	CTSL (ENSBGRG00000006446)	ENSBGRG00000006482	AOPEP (ENSBGRG00000008818)	FANCC (ENSBGRG00000009148)	ENSBGRG00000009288	PTCH1 (ENSBGRG00000009313)	ERCC6L2 (ENSBGRG00000009781)	ENSBGRG00000010208	SLC35D2 (ENSBGRG00000010244)	ZNF367 (ENSBGRG00000010925)	HABP4 (ENSBGRG00000010967) ##22	ENSBGRG00000011305	ENSBGRG00000011754	PRXL2C (ENSBGRG00000011780)	ENSBGRG00000011890	ZNF782 (ENSBGRG00000011910)	CTSV (ENSBGRG00000012003)	FAM240B (ENSBGRG00000012064)	ENSBGRG00000012121	ZNF484 (ENSBGRG00000012197)	IARS1 (ENSBGRG00000012252)	NOL8 (ENSBGRG00000012947)	CENPP (ENSBGRG00000013099)	OGN (ENSBGRG00000013163)	OMD (ENSBGRG00000013215)	ASPN (ENSBGRG00000013260)
Wild yak	MODERN SPECIES	1603														ENSBMUG00000002090	ZNF367 (ENSBMUG00000002068)	HABP4 (ENSBMUG00000002019) ##22	ENSBMUG00000001939	PRXL2C (ENSBMUG00000001782)	ENSBMUG00000001763	ZNF782 (ENSBMUG00000001743)	CTSV (ENSBMUG00000001673)
Siberian musk deer	MODERN SPECIES	328	ENSMMSG00000012436	ENSMMSG00000012459	GAS1 (ENSMMSG00000012475)	DAPK1 (ENSMMSG00000006717)	CTSL (ENSMMSG00000006857)	FBP2 (ENSMMSG00000006907)	FBP1 (ENSMMSG00000006947)	AOPEP (ENSMMSG00000007017)	FANCC (ENSMMSG00000007120)	PTCH1 (ENSMMSG00000007210)	ERCC6L2 (ENSMMSG00000007507)	ENSMMSG00000007564	HSD17B3 (ENSMMSG00000007613)	SLC35D2 (ENSMMSG00000007742)	ZNF367 (ENSMMSG00000007964)	HABP4 (ENSMMSG00000007990) ##22	ENSMMSG00000008052	PRXL2C (ENSMMSG00000008179)	ZNF782 (ENSMMSG00000008217)	CTSV (ENSMMSG00000008251)	FAM240B (ENSMMSG00000008287)	ZNF484 (ENSMMSG00000008310)	IARS1 (ENSMMSG00000008349)	NOL8 (ENSMMSG00000008845)	CENPP (ENSMMSG00000008957)	OGN (ENSMMSG00000009002)	ENSMMSG00000009029	OMD (ENSMMSG00000009072)	ASPN (ENSMMSG00000009119)	ECM2 (ENSMMSG00000009172)	IPPK (ENSMMSG00000009229)
Camelidae	ANCESTRAL SPECIES	67	ENSGT00940000164141	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000154367.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000163752	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000153505.a.b.b	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00530000069333.a	ENSGT00390000004113	ENSGT00940000160218	ENSGT00940000158148	ENSGT00530000063168.a.a.a	ENSGT00940000157161.b	ENSGT00940000158892.b	ENSGT00390000016408	ENSGT00390000006976	ENSGT00940000159597
Alpaca	MODERN SPECIES	348													HSD17B3 (ENSVPAG00000002180)	SLC35D2 (ENSVPAG00000002181)	ZNF367 (ENSVPAG00000002182)	ENSVPAG00000002183 ##22	ENSVPAG00000002184
Arabian camel	MODERN SPECIES	36	ENSCDRG00005019060	ISCA1 (ENSCDRG00005019044)	TUT7 (ENSCDRG00005018902)	ENSCDRG00005018856	DAPK1 (ENSCDRG00005018762)	CTSL (ENSCDRG00005018728)	FBP2 (ENSCDRG00005018702)	FBP1 (ENSCDRG00005018637)	AOPEP (ENSCDRG00005018584)	FANCC (ENSCDRG00005018499)	PTCH1 (ENSCDRG00005018352)	ERCC6L2 (ENSCDRG00005018264)	HSD17B3 (ENSCDRG00005018135)	SLC35D2 (ENSCDRG00005018028)	ZNF367 (ENSCDRG00005017980)	HABP4 (ENSCDRG00005017843) ##22	ENSCDRG00005017515	PRXL2C (ENSCDRG00005017435)	ENSCDRG00005017408	ZNF782 (ENSCDRG00005017381)	ENSCDRG00005017342	CTSV (ENSCDRG00005017297)	FAM240B (ENSCDRG00005017263)	PTPDC1 (ENSCDRG00005017136)	ENSCDRG00005017094	PHF2 (ENSCDRG00005016927)	FAM120A (ENSCDRG00005016768)	WNK2 (ENSCDRG00005010400)	NINJ1 (ENSCDRG00005010229)	CARD19 (ENSCDRG00005010157)	SUSD3 (ENSCDRG00005010096)
Laurasiatheria_b	ANCESTRAL SPECIES	11	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b.l.a	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00390000002550	ENSGT00940000163752	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000153505.a.b.b	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00530000069333.a	ENSGT00950000183043.a.b.b.a.a.a.a.b	ENSGT00940000163669
Carnivora	ANCESTRAL SPECIES	25	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b.l.a.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000163752	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000153505.a.b.b	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00530000069333.a	ENSGT00950000183043.a.b.b.a.a.a.a.b
Caniformia	ANCESTRAL SPECIES	29	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b.l.a.b.c	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000163752	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000153505.a.b.b	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00530000069333.a	ENSGT00950000183043.a.b.b.a.a.a.a.b
Caniformia_b	ANCESTRAL SPECIES	32	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b.l.a.b.c	ENSGT00940000154367.b.n	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000163752	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000153505.a.b.b	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00530000069333.a	ENSGT00950000183043.a.b.b.a.a.a.a.b	ENSGT00940000163669
Ursidae	ANCESTRAL SPECIES	43	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT01000000221508	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b.l.a.b.c	ENSGT00940000154367.b.n	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000163752	ENSGT00940000160266.e	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000153505.a.b.b	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00530000069333.a	ENSGT00950000183043.a.b.b.a.a.a.a.b	ENSGT00940000163669
Ursus	ANCESTRAL SPECIES	196				ENSGT01000000221508	ENSGT00940000153424.a.b	ENSGT00940000154367.b.n	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a.k	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000163752	ENSGT00940000160266.e	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000153505.a.b.b	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00950000183043.a.b.b.a.a.a.a.b	ENSGT00940000163669
Polar bear	MODERN SPECIES	465	ENSUMAG00000007595	DAPK1 (ENSUMAG00000007670)	ENSUMAG00000008185	ENSUMAG00000008238	ENSUMAG00000008543	FBP2 (ENSUMAG00000008547)	FBP1 (ENSUMAG00000008553)	AOPEP (ENSUMAG00000008563)	ENSUMAG00000008576	ENSUMAG00000008590	FANCC (ENSUMAG00000008614)	PTCH1 (ENSUMAG00000008813)	ERCC6L2 (ENSUMAG00000009823)	HSD17B3 (ENSUMAG00000009841)	SLC35D2 (ENSUMAG00000009849)	ENSUMAG00000009860 ##22	ENSUMAG00000009874	PRXL2C (ENSUMAG00000009894)	ZNF510 (ENSUMAG00000009897)	ZNF782 (ENSUMAG00000009901)	ENSUMAG00000009904	ENSUMAG00000009908	ZNF658 (ENSUMAG00000009914)
American black bear	MODERN SPECIES	2357															ZNF367 (ENSUAMG00000007978)	HABP4 (ENSUAMG00000007986) ##22	ENSUAMG00000007990	PRXL2C (ENSUAMG00000008002)
Giant Panda	MODERN SPECIES	8	TUT7 (ENSAMEG00000004148)	GAS1 (ENSAMEG00000019430)	ENSAMEG00000024576	ENSAMEG00000006710	ENSAMEG00000011406	ENSAMEG00000011432	ENSAMEG00000011466	ENSAMEG00000011494	AOPEP (ENSAMEG00000011525)	FANCC (ENSAMEG00000011534)	PTCH1 (ENSAMEG00000011568)	ERCC6L2 (ENSAMEG00000011657)	HSD17B3 (ENSAMEG00000007099)	SLC35D2 (ENSAMEG00000012082)	ZNF367 (ENSAMEG00000025616)	HABP4 (ENSAMEG00000012025) ##22	ENSAMEG00000011999	PRXL2C (ENSAMEG00000011995)	ZNF782 (ENSAMEG00000024008)	ENSAMEG00000030766	ENSAMEG00000006522	ENSAMEG00000024810
Mustelinae	ANCESTRAL SPECIES	135	ENSGT00530000063675.b	ENSGT00940000164155	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363
Ferret	MODERN SPECIES	406							FBP2 (ENSMPUG00000006656)	FBP1 (ENSMPUG00000006664)	AOPEP (ENSMPUG00000006671)	FANCC (ENSMPUG00000006698)	PTCH1 (ENSMPUG00000006714)	ENSMPUG00000006738	HSD17B3 (ENSMPUG00000006799)	SLC35D2 (ENSMPUG00000006856)	ZNF367 (ENSMPUG00000006868)	HABP4 (ENSMPUG00000006887) ##22	ENSMPUG00000006893	PRXL2C (ENSMPUG00000006907)	ENSMPUG00000006919	CTSV (ENSMPUG00000006931)	ENSMPUG00000006939
American mink	MODERN SPECIES	125	ISCA1 (ENSNVIG00000013398)	TUT7 (ENSNVIG00000013222)	GAS1 (ENSNVIG00000013204)	DAPK1 (ENSNVIG00000012736)	ENSNVIG00000012721	FBP2 (ENSNVIG00000012704)	FBP1 (ENSNVIG00000012691)	AOPEP (ENSNVIG00000012625)	FANCC (ENSNVIG00000012571)	PTCH1 (ENSNVIG00000012267)	ERCC6L2 (ENSNVIG00000012181)	HSD17B3 (ENSNVIG00000012109)	SLC35D2 (ENSNVIG00000012075)	ZNF367 (ENSNVIG00000012051)	ENSNVIG00000012043	HABP4 (ENSNVIG00000012027) ##22	ENSNVIG00000011981	PRXL2C (ENSNVIG00000011970)
Canidae	ANCESTRAL SPECIES	47	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b.l.a.b.d	ENSGT00940000153321.b.b.l.a.b.c	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000153505.a.b.b	ENSGT00940000163051	ENSGT00940000154367.a.m.a	ENSGT00530000069333.a
Canis_lupus	ANCESTRAL SPECIES		ENSGT00940000164155	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b.l.a.b.c	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000153505.a.b.b	ENSGT00940000163051	ENSGT00940000154367.a.m.a.b	ENSGT00530000069333.a	ENSGT00390000012756	ENSGT00390000004871.b.k.a.a	ENSGT00940000155617.B	ENSGT00530000063698.a.a	ENSGT00390000012396	ENSGT00940000159800	ENSGT00940000157142	ENSGT00950000182802.B.a.b.b.a.b	ENSGT00390000015278.h
Dingo	MODERN SPECIES	125	ENSCAFG00020023609	ENSCAFG00020023607	ENSCAFG00020023601	DAPK1 (ENSCAFG00020023375)	ENSCAFG00020023239	FBP2 (ENSCAFG00020023226)	FBP1 (ENSCAFG00020023224)	AOPEP (ENSCAFG00020023220)	FANCC (ENSCAFG00020023172)	PTCH1 (ENSCAFG00020022802)	ENSCAFG00020022764	ENSCAFG00020022761	HSD17B3 (ENSCAFG00020022744)	SLC35D2 (ENSCAFG00020022723)	ZNF367 (ENSCAFG00020022719)	HABP4 (ENSCAFG00020022704) ##22	ENSCAFG00020022657	PRXL2C (ENSCAFG00020022646)	ZNF510 (ENSCAFG00020022643)	ZNF782 (ENSCAFG00020022642)	ENSCAFG00020022639	ENSCAFG00020022632	ENSCAFG00020022630	ENSCAFG00020022625	ENSCAFG00020022616	EPB41L2 (ENSCAFG00020022608)	TMEM200A (ENSCAFG00020022603)	SAMD3 (ENSCAFG00020022600)	L3MBTL3 (ENSCAFG00020022570)	ARHGAP18 (ENSCAFG00020022566)	ENSCAFG00020022564
Dog	MODERN SPECIES		C9orf153 (ENSCAFG00845005214)	ENSCAFG00845005203	TUT7 (ENSCAFG00845005138)	ENSCAFG00845005091	DAPK1 (ENSCAFG00845005073)	ENSCAFG00845005052	ENSCAFG00845005046	FBP2 (ENSCAFG00845005034)	FBP1 (ENSCAFG00845005020)	AOPEP (ENSCAFG00845004982)	FANCC (ENSCAFG00845004921)	PTCH1 (ENSCAFG00845003905)	ERCC6L2 (ENSCAFG00845003753)	HSD17B3 (ENSCAFG00845003593)	ZNF367 (ENSCAFG00845003549)	HABP4 (ENSCAFG00845003506) ##22	ENSCAFG00845003296	PRXL2C (ENSCAFG00845003191)	ZNF510 (ENSCAFG00845003072)	ZNF782 (ENSCAFG00845003018)	ENSCAFG00845002925	ENSCAFG00845002888	ENSCAFG00845002773	ENSCAFG00845002604	EPB41L2 (ENSCAFG00845002025)	TMEM200A (ENSCAFG00845001609)	SAMD3 (ENSCAFG00845001494)	L3MBTL3 (ENSCAFG00845001425)	ARHGAP18 (ENSCAFG00845001285)	ENSCAFG00845001247	ENSCAFG00845001239
Red fox	MODERN SPECIES	194	KCNJ4 (ENSVVUG00000022771)	CSNK1E (ENSVVUG00000022775)	TMEM184B (ENSVVUG00000022788)	MAFF (ENSVVUG00000022794)	PLA2G6 (ENSVVUG00000022796)	ENSVVUG00000022801	FBP2 (ENSVVUG00000022821)	FBP1 (ENSVVUG00000022822)	AOPEP (ENSVVUG00000022825)	FANCC (ENSVVUG00000022840)	PTCH1 (ENSVVUG00000022848)	ERCC6L2 (ENSVVUG00000022869)	HSD17B3 (ENSVVUG00000022907)	SLC35D2 (ENSVVUG00000022922)	ZNF367 (ENSVVUG00000022936)	HABP4 (ENSVVUG00000022970) ##22	CDC14B (ENSVVUG00000022980)	PRXL2C (ENSVVUG00000023001)	ENSVVUG00000023002	ENSVVUG00000023003	ZNF510 (ENSVVUG00000023006)	ZNF782 (ENSVVUG00000023008)
Felidae	ANCESTRAL SPECIES	28	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000154367.b.m.a.b	ENSGT00940000154367.b.m.b	ENSGT00940000154367.b.n	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000153505.a.b.b	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00530000069333.a	ENSGT00390000002414.mb
Panthera	ANCESTRAL SPECIES	34	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000154367.b.m.a.b	ENSGT00940000154367.b.m.b	ENSGT00940000154367.b.n	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000153505.a.b.b	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00530000069333.a	ENSGT00940000163669
Panthera_a	ANCESTRAL SPECIES	35	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000154367.b.m.a.b	ENSGT00940000154367.b.m.b	ENSGT00940000154367.b.n	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00530000069333.a	ENSGT00940000163669
lion	MODERN SPECIES	13	ENSPLOG00000011540	ENSPLOG00000010937	ENSPLOG00000010849	ENSPLOG00000010600	ENSPLOG00000010163	FBP2 (ENSPLOG00000010075)	FBP1 (ENSPLOG00000010008)	AOPEP (ENSPLOG00000009897)	FANCC (ENSPLOG00000009864)	PTCH1 (ENSPLOG00000009736)	ERCC6L2 (ENSPLOG00000009574)	ENSPLOG00000009543	HSD17B3 (ENSPLOG00000009419)	SLC35D2 (ENSPLOG00000009228)	ZNF367 (ENSPLOG00000009156)	HABP4 (ENSPLOG00000009107) ##22	ENSPLOG00000008892	PRXL2C (ENSPLOG00000008735)	ENSPLOG00000008712	ENSPLOG00000008697	ENSPLOG00000008664	ENSPLOG00000008634	HACD4 (ENSPLOG00000008580)	FOCAD (ENSPLOG00000008398)	MLLT3 (ENSPLOG00000008272)	SLC24A2 (ENSPLOG00000008118)	ACER2 (ENSPLOG00000008065)	ENSPLOG00000008039	RPS6 (ENSPLOG00000007999)	DENND4C (ENSPLOG00000007889)	PLIN2 (ENSPLOG00000007840)
leopard	MODERN SPECIES	94	ENSPPRG00000016997	ENSPPRG00000017238	ENSPPRG00000017460	ENSPPRG00000017508	ENSPPRG00000017629	ENSPPRG00000017692	FBP2 (ENSPPRG00000017726)	FBP1 (ENSPPRG00000017781)	AOPEP (ENSPPRG00000018024)	FANCC (ENSPPRG00000018311)	PTCH1 (ENSPPRG00000019039)	ENSPPRG00000019238	HSD17B3 (ENSPPRG00000019886)	SLC35D2 (ENSPPRG00000020058)	ZNF367 (ENSPPRG00000020267)	HABP4 (ENSPPRG00000020486) ##22	ENSPPRG00000021098	PRXL2C (ENSPPRG00000021166)	ENSPPRG00000021194	ZNF510 (ENSPPRG00000021365)	ZNF782 (ENSPPRG00000021394)
Tiger	MODERN SPECIES	292	ENSPTIG00000005691	ENSPTIG00000005805	ENSPTIG00000006150	ENSPTIG00000006375	FBP2 (ENSPTIG00000006636)	FBP1 (ENSPTIG00000006777)	AOPEP (ENSPTIG00000007069)	ENSPTIG00000007589	FANCC (ENSPTIG00000007601)	PTCH1 (ENSPTIG00000007887)	ENSPTIG00000009148	ENSPTIG00000009613	HSD17B3 (ENSPTIG00000009924)	SLC35D2 (ENSPTIG00000010233)	ZNF367 (ENSPTIG00000010773)	HABP4 (ENSPTIG00000010954) ##22	ENSPTIG00000011293	PRXL2C (ENSPTIG00000011929)	ZNF510 (ENSPTIG00000011987)	ZNF782 (ENSPTIG00000012081)	CTSV (ENSPTIG00000012114)	FAM240B (ENSPTIG00000012478)	ZNF658 (ENSPTIG00000012584)
Cat	MODERN SPECIES	244	ENSFCAG00000049737	ENSFCAG00000001764	ENSFCAG00000027621	FBP2 (ENSFCAG00000001999)	FBP1 (ENSFCAG00000009315)	AOPEP (ENSFCAG00000003704)	FANCC (ENSFCAG00000003706)	PTCH1 (ENSFCAG00000011205)	ERCC6L2 (ENSFCAG00000002729)	ENSFCAG00000047910	ENSFCAG00000053266	HSD17B3 (ENSFCAG00000002732)	SLC35D2 (ENSFCAG00000015586)	ZNF367 (ENSFCAG00000015587)	ENSFCAG00000049893	HABP4 (ENSFCAG00000027471) ##22	ENSFCAG00000024293	PRXL2C (ENSFCAG00000003730)	ZNF782 (ENSFCAG00000035716)	ENSFCAG00000039404	FAM240B (ENSFCAG00000035852)	ENSFCAG00000031480	ENSFCAG00000053085	ENSFCAG00000043908	ENSFCAG00000043907	ENSFCAG00000049075	MLANA (ENSFCAG00000032990)	KIAA2026 (ENSFCAG00000026234)	ENSFCAG00000041956	IL33 (ENSFCAG00000009049)	TPD52L3 (ENSFCAG00000004165)
Laurasiatheria_c	ANCESTRAL SPECIES	11	ENSGT00940000164141	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000154367.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000163752	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00950000182890.D.d.c	ENSGT00940000163051	ENSGT00940000154367.a
Chiroptera	ANCESTRAL SPECIES	84						ENSGT00940000154367.b.p	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000163752	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00950000182890.D.d.c	ENSGT00940000153505.a.b.b	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00940000154367.b.o
Microchiroptera	ANCESTRAL SPECIES	36						ENSGT00940000154367.b.p	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000163752	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00950000182890.D.d.c	ENSGT00940000153505.a.b.b	ENSGT00940000163051	ENSGT00940000154367.a	ENSGT00940000154367.b.o.b	ENSGT00940000157772	ENSGT00940000156665	ENSGT00390000005644	ENSGT01000000214430.b	ENSGT01050000244898.a.a.a.b	ENSGT00390000010786	ENSGT00940000158840	ENSGT00940000161278
Greater horseshoe bat	MODERN SPECIES	3	ENSRFEG00010015896	ZNF658 (ENSRFEG00010016073)	ENSRFEG00010016103	FAM240B (ENSRFEG00010016229)	ENSRFEG00010016284	FBP2 (ENSRFEG00010016310)	FBP1 (ENSRFEG00010016360)	AOPEP (ENSRFEG00010016463)	FANCC (ENSRFEG00010016614)	ENSRFEG00010016646	PTCH1 (ENSRFEG00010016726)	ERCC6L2 (ENSRFEG00010017408)	HSD17B3 (ENSRFEG00010017674)	SLC35D2 (ENSRFEG00010017943)	ZNF367 (ENSRFEG00010018048)	HABP4 (ENSRFEG00010018115) ##22	ENSRFEG00010018220	PRXL2C (ENSRFEG00010018689)	ENSRFEG00010018726	ENSRFEG00010018758	ENSRFEG00010018774	ENSRFEG00010018789	ENSRFEG00010018807	ENSRFEG00010018848	ZNF510 (ENSRFEG00010018898)	ZNF782 (ENSRFEG00010018925)	ENSRFEG00010018955	ACO1 (ENSRFEG00010018977)	LINGO2 (ENSRFEG00010019029)	C9orf72 (ENSRFEG00010019054)	IFNK (ENSRFEG00010019129)
Microbat	MODERN SPECIES	1308											ENSMLUG00000000845	ENSMLUG00000000857	HSD17B3 (ENSMLUG00000016311)	SLC35D2 (ENSMLUG00000017274)	ZNF367 (ENSMLUG00000017279)	HABP4 (ENSMLUG00000017282) ##22	ENSMLUG00000017286	ENSMLUG00000015125
Megabat	MODERN SPECIES	502													HSD17B3 (ENSPVAG00000007646)	SLC35D2 (ENSPVAG00000007648)	ZNF367 (ENSPVAG00000007651)	HABP4 (ENSPVAG00000007654) ##22	ENSPVAG00000007655
Equus	ANCESTRAL SPECIES	73	ENSGT00940000164141	ENSGT00490000043385	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000154367.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000163752	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00950000182890.D.d.c	ENSGT00940000163051	ENSGT00940000154367.a
Donkey	MODERN SPECIES	15	ISCA1 (ENSEASG00005020172)	TUT7 (ENSEASG00005020165)	GAS1 (ENSEASG00005029811)	DAPK1 (ENSEASG00005020145)	ENSEASG00005019984	ENSEASG00005020129	ENSEASG00005020124	ENSEASG00005020116	ENSEASG00005028094	FANCC (ENSEASG00005020059)	PTCH1 (ENSEASG00005020045)	ERCC6L2 (ENSEASG00005020030)	HSD17B3 (ENSEASG00005030353)	SLC35D2 (ENSEASG00005020016)	ZNF367 (ENSEASG00005020011)	HABP4 (ENSEASG00005020009) ##22	ENSEASG00005020003	PRXL2C (ENSEASG00005032744)	ENSEASG00005019993	ZNF510 (ENSEASG00005019990)	ZNF782 (ENSEASG00005038116)	ENSEASG00005020134	ENSEASG00005032687	ENSEASG00005033657	ENSEASG00005028560	ENSEASG00005012995	ENSEASG00005024462	ENSEASG00005023723
Horse	MODERN SPECIES	15	TUT7 (ENSECAG00000014831)	GAS1 (ENSECAG00000032465)	DAPK1 (ENSECAG00000019867)	CTSL (ENSECAG00000007210)	FBP2 (ENSECAG00000052717)	FBP1 (ENSECAG00000021586)	AOPEP (ENSECAG00000015883)	FANCC (ENSECAG00000006736)	PTCH1 (ENSECAG00000000141)	ENSECAG00000051420	ERCC6L2 (ENSECAG00000007770)	HSD17B3 (ENSECAG00000002868)	SLC35D2 (ENSECAG00000009749)	ZNF367 (ENSECAG00000009173)	ENSECAG00000001669	HABP4 (ENSECAG00000008748) ##22	ENSECAG00000055928	ENSECAG00000029122	PRXL2C (ENSECAG00000000080)	ENSECAG00000020670	ZNF510 (ENSECAG00000020450)	ENSECAG00000052436	ZNF782 (ENSECAG00000018792)	ENSECAG00000045188	CTSV (ENSECAG00000004288)	ENSECAG00000032719
Eulipotyphla	ANCESTRAL SPECIES	1945																ENSGT00520000055591.b ##22	ENSGT00940000155950
Hedgehog	MODERN SPECIES	2794																HABP4 (ENSEEUG00000015755) ##22	ENSEEUG00000015779
Common shrew	MODERN SPECIES	2082																HABP4 (ENSSARG00000004558) ##22
Atlantogenata	ANCESTRAL SPECIES	67	ENSGT00940000156859	ENSGT00900000143042	ENSGT00940000153424.a.b	ENSGT00940000154367	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00390000002550	ENSGT00940000163752	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363
Xenarthra	ANCESTRAL SPECIES	408								ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363
Armadillo	MODERN SPECIES	2795	DAPK1 (ENSDNOG00000002488)	ENSDNOG00000012037	FBP2 (ENSDNOG00000047741)	FBP1 (ENSDNOG00000009238)	ENSDNOG00000008402	ENSDNOG00000032933	ENSDNOG00000046082	PTCH1 (ENSDNOG00000013103)	ENSDNOG00000045879	ERCC6L2 (ENSDNOG00000048333)	ENSDNOG00000030826	ENSDNOG00000047104	HSD17B3 (ENSDNOG00000017101)	SLC35D2 (ENSDNOG00000040183)	ZNF367 (ENSDNOG00000035249)	HABP4 (ENSDNOG00000007710) ##22	ENSDNOG00000042237	ENSDNOG00000048126	ENSDNOG00000044216	ENSDNOG00000037262	ENSDNOG00000047160
Afrotheria	ANCESTRAL SPECIES	75	ENSGT00940000156859	ENSGT00900000143042	ENSGT00940000153424.a.b	ENSGT00940000154367.d	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00390000002550	ENSGT00940000163752	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363
Afrotheria_a	ANCESTRAL SPECIES	74	ENSGT00490000043385	ENSGT00940000156859	ENSGT00900000143042	ENSGT00940000153424.a.b	ENSGT00940000154367.d	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000163752	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363
Elephant	MODERN SPECIES	472	TUT7 (ENSLAFG00000007884)	ENSLAFG00000030520	DAPK1 (ENSLAFG00000009987)	ENSLAFG00000000682	ENSLAFG00000026892	ENSLAFG00000026864	FBP2 (ENSLAFG00000010664)	FBP1 (ENSLAFG00000010666)	ENSLAFG00000006013	FANCC (ENSLAFG00000003644)	PTCH1 (ENSLAFG00000006976)	ENSLAFG00000013092	HSD17B3 (ENSLAFG00000013420)	SLC35D2 (ENSLAFG00000002986)	ZNF367 (ENSLAFG00000010427)	HABP4 (ENSLAFG00000018478) ##22	ENSLAFG00000018485	PRXL2C (ENSLAFG00000018488)	ENSLAFG00000030747	ENSLAFG00000031109
Hyrax	MODERN SPECIES	2208																HABP4 (ENSPCAG00000004204) ##22	ENSPCAG00000004264
Tenrec	MODERN SPECIES	8736																HABP4 (ENSETEG00000011475) ##22	ENSETEG00000011476
Anura	ANCESTRAL SPECIES	29	ENSGT01100000265558	ENSGT00530000063675.b	ENSGT00940000156859	ENSGT00390000001195.a	ENSGT00940000153424.a.b	ENSGT00940000153321.b.b	ENSGT00390000015513.a.a.b	ENSGT00390000015513.a.a.a	ENSGT00940000155211	ENSGT00390000016390	ENSGT00940000159011	ENSGT00940000161328	ENSGT00940000160266	ENSGT00940000160237	ENSGT00670000098074	ENSGT00520000055591.b ##22	ENSGT00940000155950	ENSGT00510000048363	ENSGT00940000162302	ENSGT00940000166301	ENSGT00940000154960	ENSGT00940000160228	ENSGT00940000156081	ENSGT00940000168229
Frog	MODERN SPECIES		gas1 (ENSXETG00000048456)	dapk1 (ENSXETG00000017571)	ctsv (ENSXETG00000027581)	fbp2 (ENSXETG00000017586)	fbp1 (ENSXETG00000038459)	aopep (ENSXETG00000017591)	fancc (ENSXETG00000017597)	ENSXETG00000043605	ENSXETG00000044769	ptch1 (ENSXETG00000014834)	ercc6l2 (ENSXETG00000014835)	hsd17b3 (ENSXETG00000014837)	slc35d2 (ENSXETG00000041312)	abraxas1 (ENSXETG00000014838)	znf367 (ENSXETG00000014840)	habp4 (ENSXETG00000014841) ##22	cdc14b (ENSXETG00000014839)	ENSXETG00000041439	prxl2c (ENSXETG00000039844)	ENSXETG00000044013	tdgf1.3 (ENSXETG00000009177)	tdgf1.2 (ENSXETG00000036205)	tdgf1.1 (ENSXETG00000047611)	lrrc2 (ENSXETG00000009181)	sass6 (ENSXETG00000009182)	ENSXETG00000043022	ENSXETG00000038006	cntnap4 (ENSXETG00000010874)	mfsd14bl (ENSXETG00000038812)	ENSXETG00000046766	spin1 (ENSXETG00000010870)
Leishan spiny toad	MODERN SPECIES		ENSLLEG00000002495	ENSLLEG00000002486	FBP2 (ENSLLEG00000002458)	FBP1 (ENSLLEG00000002435)	ENSLLEG00000002423	ENSLLEG00000002414	AOPEP (ENSLLEG00000002292)	ENSLLEG00000002192	FANCC (ENSLLEG00000002124)	ENSLLEG00000002102	PTCH1 (ENSLLEG00000001683)	ENSLLEG00000001534	HSD17B3 (ENSLLEG00000001469)	SLC35D2 (ENSLLEG00000001436)	ZNF367 (ENSLLEG00000001419)	HABP4 (ENSLLEG00000001392) ##22	ENSLLEG00000001143	PRXL2C (ENSLLEG00000001087)	ENSLLEG00000001077	ENSLLEG00000001037	ENSLLEG00000001025	LRRC2 (ENSLLEG00000000993)	ENSLLEG00000000975	ENSLLEG00000000866	ENSLLEG00000000853	CNTNAP4 (ENSLLEG00000000684)	ENSLLEG00000000526	ENSLLEG00000000494	ENSLLEG00000000452	ENSLLEG00000000423	ENSLLEG00000000409
Coelacanth	MODERN SPECIES	962													HSD17B3 (ENSLACG00000022633)	ENSLACG00000012469	ZNF367 (ENSLACG00000011483)	HABP4 (ENSLACG00000011025) ##22	cdc14b (ENSLACG00000009980)	PRXL2C (ENSLACG00000009183)	ENSLACG00000006893	LRRC2 (ENSLACG00000005107)	ENSLACG00000004703	ENSLACG00000003241	ENSLACG00000001495
Ciona	ANCESTRAL SPECIES	1113																ENSGT00520000055591 #22	ENSGT00390000004835
Ciona intestinalis	MODERN SPECIES	12	ENSCING00000024037	ENSCING00000006359	ENSCING00000006356	ENSCING00000006353	ENSCING00000024722	ENSCING00000022238	ENSCING00000006371	ENSCING00000006411	ENSCING00000010961	ENSCING00000006415	ENSCING00000006426	ENSCING00000013240	ENSCING00000013239	ENSCING00000018126	ENSCING00000006433	ENSCING00000006437 #22	ENSCING00000006439	ENSCING00000013237	ENSCING00000006443	ENSCING00000018638	ENSCING00000006447	ENSCING00000013236	ENSCING00000006450	ENSCING00000018499	ENSCING00000019321	ENSCING00000013235	ENSCING00000013233	ENSCING00000013231	ENSCING00000006469	ENSCING00000006465	ENSCING00000006462
Ecdysozoa	ANCESTRAL SPECIES																	ENSGT00520000055591 #22
Fruitfly	DUPLICATION
Fruitfly	DUPLICATION
Fruitfly	MODERN SPECIES	16	CG15260 (FBgn0028850)	CG15263 (FBgn0028853)	UK114 (FBgn0086691)	Cul3 (FBgn0261268)	yuri (FBgn0045842)	Uxt (FBgn0259982)	PolD3 (FBgn0283467)	dao (FBgn0028862)	ZnT35C (FBgn0028516)	CG43230 (FBgn0262875)	Sfp35C (FBgn0259965)	CG4168 (FBgn0028888)	stc (FBgn0001978)	CG15269 (FBgn0028878)	CG15270 (FBgn0028879)	vig (FBgn0024183) #22	vas (FBgn0283442)	solo (FBgn0283440)	TfIIS (FBgn0010422)	CG33679 (FBgn0053679)	ck (FBgn0000317)	Su(H) (FBgn0004837)	CIAPIN1 (FBgn0001977)	yellow-c (FBgn0041713)	CG31832 (FBgn0051832)	CG33310 (FBgn0053310)	GABA-B-R1 (FBgn0260446)	Rnmt (FBgn0286027)	THG (FBgn0283659)	NC2beta (FBgn0028926)	Ankrd49 (FBgn0261881)
Fruitfly	MODERN SPECIES	19	PQBP1 (FBgn0039270)	Stt3B (FBgn0011336)	CG11839 (FBgn0039271)	CG11836 (FBgn0039272)	shams (FBgn0039273)	CG11920 (FBgn0039274)	fd96Ca (FBgn0004897)	fd96Cb (FBgn0004898)	CG33096 (FBgn0053096)	CG33095 (FBgn0053095)	CG45095 (FBgn0266534)	CG34027 (FBgn0054027)	Nepl16 (FBgn0039277)	TTLL5 (FBgn0051108)	CG31510 (FBgn0051510)	vig2 (FBgn0046214) #22	Mocs2B (FBgn0039280)	Mocs2A (FBgn0260229)	Clbn (FBgn0259152)	Bili (FBgn0039282)	danr (FBgn0039283)	lobo (FBgn0083946)	dan (FBgn0039286)	CG13653 (FBgn0039288)	Cad96Ca (FBgn0022800)	CG13654 (FBgn0039290)	CG13663 (FBgn0039291)	CG31106 (FBgn0051106)	CG31103 (FBgn0051103)	Alg9 (FBgn0039293)	Cad96Cb (FBgn0039294)
Fruitfly	MODERN SPECIES	26	Scamp (FBgn0040285)	Cngl (FBgn0263257)	CG9164 (FBgn0030634)	Pp1-13C (FBgn0003132)	acj6 (FBgn0000028)	Prp5 (FBgn0030631)	CG12608 (FBgn0030630)	CG9123 (FBgn0030629)	HDAC6 (FBgn0026428)	CG9114 (FBgn0030628)	dah (FBgn0015926)	Top1 (FBgn0004924)	gce (FBgn0261703)	CG5877 (FBgn0030625)	CG9106 (FBgn0030624)	PPYR1 (FBgn0030623) #22	CG9101 (FBgn0030622)	CG43076 (FBgn0262486)	CG43075 (FBgn0262485)	CG5662 (FBgn0030620)	CG32588 (FBgn0052588)	CG43737 (FBgn0263994)	CG9095 (FBgn0030617)	RpL37a (FBgn0030616)	drd (FBgn0260006)	Cyp4s3 (FBgn0030615)	CG9072 (FBgn0030614)	Rab3-GEF (FBgn0030613)	Dbct (FBgn0030612)	CG15027 (FBgn0030611)	Cox17 (FBgn0030610)