Vertebrata	DUPLICATION
Vertebrata	ANCESTRAL SPECIES																	ENSGT00390000011365.a #22
Gnathostomata	ANCESTRAL SPECIES	304									ENSGT00940000166827	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT00390000017018.b
Euteleostomi	ANCESTRAL SPECIES	43	ENSGT00390000002792	ENSGT00390000006954	ENSGT00390000007586.b	ENSGT00950000185412	ENSGT00940000165034	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000156583 #18	ENSGT00940000165176	ENSGT00940000158507 #19	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00940000159025	ENSGT00940000156633	ENSGT00940000163989.a.b	ENSGT00940000165755	ENSGT00940000158189	ENSGT00950000183033.a.b.a	ENSGT01030000234528.A.a.a	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B
Sarcopterygii	ANCESTRAL SPECIES	41	ENSGT00390000002792	ENSGT00390000006954	ENSGT00390000007586.b	ENSGT00940000165034	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00940000166827	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000156583 #18	ENSGT00940000165176	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00440000033329.a.a.a	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000154593.a.a	ENSGT00940000159577 #31	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34
Tetrapoda	ANCESTRAL SPECIES	27	ENSGT00390000006954	ENSGT00390000007586.b	ENSGT00950000185412	ENSGT00940000165034	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00940000166827	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000156583 #18	ENSGT00940000165176	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00440000033329.a.a.a	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Amniota	ANCESTRAL SPECIES	17	ENSGT00390000006954	ENSGT00390000009443	ENSGT00940000161098	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00940000166827	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000156583 #18	ENSGT00940000165176	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00440000033329.a.a.a	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Mammalia	ANCESTRAL SPECIES	30	ENSGT00390000002792	ENSGT00390000006954	ENSGT00390000009443	ENSGT00940000161098	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00940000166827	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509	ENSGT00940000163509.b
Theria	ANCESTRAL SPECIES	18	ENSGT00950000183054.a.a.b	ENSGT00950000183027.a.a	ENSGT00390000002792	ENSGT00390000006954	ENSGT00390000009443	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509	ENSGT00940000161609
Eutheria	ANCESTRAL SPECIES	6	ENSGT00390000006954	ENSGT00390000009443	ENSGT00940000162678	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509	ENSGT00940000161609
Boreoeutheria	ANCESTRAL SPECIES	9	ENSGT00390000006954	ENSGT00390000009443	ENSGT00940000162678	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Euarchontoglires	ANCESTRAL SPECIES	8	ENSGT00950000183007.a.b.g.a.b.b ##36	ENSGT00950000183007.a.b.g.b #36	ENSGT00940000162678	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000162517 #21	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Euarchontoglires_A	ANCESTRAL SPECIES	8	ENSGT00950000183007.a.b.g.a.a ##36	ENSGT00950000183007.a.b.g.a.b.b ##36	ENSGT00950000183007.a.b.g.b #36	ENSGT00940000162678	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000162517 #21	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Glires	ANCESTRAL SPECIES	7	ENSGT00950000183007.a.b.g.a.a ##36	ENSGT00950000183007.a.b.g.a.b.b ##36	ENSGT00950000183007.a.b.g.b #36	ENSGT00940000162678	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000162517 #21	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Rodentia	ANCESTRAL SPECIES	7	ENSGT00940000158124 #7	ENSGT00940000158245 #8	ENSGT00390000017923 #9	ENSGT00940000154451 #10	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000162517 #21	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Rodentia_B	ANCESTRAL SPECIES	4	ENSGT00940000158124 #7	ENSGT00940000158245 #8	ENSGT00390000017923 #9	ENSGT00940000154451 #10	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000162517 #21	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Myomorpha	ANCESTRAL SPECIES	28	ENSGT00940000158124 #7	ENSGT00940000158245 #8	ENSGT00390000017923 #9	ENSGT00940000154451 #10	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000162517 #21	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000163610 #37
Muroidea	ANCESTRAL SPECIES	10	ENSGT00940000158124 #7	ENSGT00940000158245 #8	ENSGT00390000017923 #9	ENSGT00940000154451 #10	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000162517 #21	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000163610 #37
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00940000158124 #7	ENSGT00940000158245 #8	ENSGT00390000017923 #9	ENSGT00940000154451 #10	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000162517 #21	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00950000183007.a.b.g.a.b.b.i ##36
Murinae	ANCESTRAL SPECIES	7	ENSGT00940000158124 #7	ENSGT00940000158245 #8	ENSGT00390000017923 #9	ENSGT00940000154451 #10	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000162517 #21	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00950000183007.a.b.g.b.d.a #35
Mus	ANCESTRAL SPECIES	2	ENSGT00940000158124 #7	ENSGT00940000158245 #8	ENSGT00390000017923 #9	ENSGT00940000154451 #10	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000162517 #21	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00950000183007.a.b.g.b.d.a #35
Mus_A	DUPLICATION
Mus_A	DUPLICATION
Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000158124 #7	ENSGT00940000158245 #8	ENSGT00390000017923 #9	ENSGT00940000154451 #10	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000162517 #21	ENSGT00390000011365.a.sb.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b.n #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00950000183007.a.b.g.b.d.a #35
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000158124 #7	ENSGT00940000158245 #8	ENSGT00390000017923 #9	ENSGT00940000154451 #10	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000162517 #21	ENSGT00390000011365.a.sb.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b.n #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00950000183007.a.b.g.b.d.a #35
Mus_C	ANCESTRAL SPECIES	3	ENSGT00940000158124 #7	ENSGT00940000158245 #8	ENSGT00390000017923 #9	ENSGT00940000154451 #10	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000162517 #21	ENSGT00390000011365.a.sb.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b.m ##32	ENSGT00390000000080.a.b.n #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34
spretus	MODERN SPECIES	2	Rapgef6 (MGP_SPRETEiJ_G0017201) #7	Cdc42se2 (MGP_SPRETEiJ_G0017202) #8	Lyrm7 (MGP_SPRETEiJ_G0017203) #9	Hint1 (MGP_SPRETEiJ_G0017204) #10	MGP_SPRETEiJ_G0017205 #11	Tnip1 (MGP_SPRETEiJ_G0017206) #12	Anxa6 (MGP_SPRETEiJ_G0017207) #13	Ccdc69 (MGP_SPRETEiJ_G0017208) #14	Gm2a (MGP_SPRETEiJ_G0017209) #15	Slc36a3 (MGP_SPRETEiJ_G0017210) #16	Slc36a2 (MGP_SPRETEiJ_G0017211) #17	Slc36a1 (MGP_SPRETEiJ_G0017212) #18	Fat2 (MGP_SPRETEiJ_G0017213) #19	Sparc (MGP_SPRETEiJ_G0017214) #20	Atox1 (MGP_SPRETEiJ_G0017215) #21	G3bp1 (MGP_SPRETEiJ_G0017216) #22	Glra1 (MGP_SPRETEiJ_G0017217) #23	Nmur2 (MGP_SPRETEiJ_G0017218) #24	Gria1 (MGP_SPRETEiJ_G0017219) #25	Fam114a2 (MGP_SPRETEiJ_G0017220) #26	Mfap3 (MGP_SPRETEiJ_G0017221) #27	Galnt10 (MGP_SPRETEiJ_G0017222) #28	Sap30l (MGP_SPRETEiJ_G0017223) #29	Hand1 (MGP_SPRETEiJ_G0017224) #30	Larp1 (MGP_SPRETEiJ_G0017225) #31	Cnot8 (MGP_SPRETEiJ_G0017226) #32	Gemin5 (MGP_SPRETEiJ_G0017227) #33	Mrpl22 (MGP_SPRETEiJ_G0017228) #34	Igtp (MGP_SPRETEiJ_G0017229) #35	Irgm2 (MGP_SPRETEiJ_G0017230) #36	MGP_SPRETEiJ_G0017231 #37
Steppe mouse	MODERN SPECIES	3255	Cdc42se2 (ENSMSIG00000008050) #8	ENSMSIG00000008083 #9	Hint1 (ENSMSIG00000008122) #10	Tnip1 (ENSMSIG00000008139) #12	Gpx3 (ENSMSIG00000008214) #11	Anxa6 (ENSMSIG00000008219) #13	ENSMSIG00000008354	Ccdc69 (ENSMSIG00000008369) #14	Gm2a (ENSMSIG00000008397) #15	Slc36a3 (ENSMSIG00000008419) #16	Slc36a2 (ENSMSIG00000008457) #17	Slc36a1 (ENSMSIG00000008490) #18	Fat2 (ENSMSIG00000008649) #19	ENSMSIG00000008765 #20	Atox1 (ENSMSIG00000008896) #21	G3bp1 (ENSMSIG00000008913) #22	Glra1 (ENSMSIG00000008952) #23	Nmur2 (ENSMSIG00000009215) #24
Mouse	MODERN SPECIES	2	Rapgef6 (ENSMUSG00000037533) #7	Cdc42se2 (ENSMUSG00000052298) #8	Lyrm7 (ENSMUSG00000020268) #9	Hint1 (ENSMUSG00000020267) #10	Gpx3 (ENSMUSG00000018339) #11	Tnip1 (ENSMUSG00000020400) #12	Anxa6 (ENSMUSG00000018340) #13	Ccdc69 (ENSMUSG00000049588) #14	Gm2a (ENSMUSG00000000594) #15	Slc36a3 (ENSMUSG00000049491) #16	Slc36a2 (ENSMUSG00000020264) #17	Slc36a1 (ENSMUSG00000020261) #18	Fat2 (ENSMUSG00000055333) #19	Sparc (ENSMUSG00000018593) #20	Atox1 (ENSMUSG00000018585) #21	G3bp1 (ENSMUSG00000018583) #22	Glra1 (ENSMUSG00000000263) #23	Nmur2 (ENSMUSG00000037393) #24	Gria1 (ENSMUSG00000020524) #25	Fam114a2 (ENSMUSG00000020523) #26	Mfap3 (ENSMUSG00000020522) #27	Galnt10 (ENSMUSG00000020520) #28	Sap30l (ENSMUSG00000020519) #29	Hand1 (ENSMUSG00000037335) #30	Larp1 (ENSMUSG00000037331) #31	Gm12248 (ENSMUSG00000086962)	Cnot8 (ENSMUSG00000020515) #32	Gemin5 (ENSMUSG00000037275) #33	Mrpl22 (ENSMUSG00000020514) #34	Igtp (ENSMUSG00000078853) #35	Irgm2 (ENSMUSG00000069874) #36
Ryukyu mouse	MODERN SPECIES	2	Rapgef6 (MGP_CAROLIEiJ_G0016359) #7	Cdc42se2 (MGP_CAROLIEiJ_G0016360) #8	Lyrm7 (MGP_CAROLIEiJ_G0016361) #9	Hint1 (MGP_CAROLIEiJ_G0016362) #10	MGP_CAROLIEiJ_G0016363 #11	Tnip1 (MGP_CAROLIEiJ_G0016364) #12	Anxa6 (MGP_CAROLIEiJ_G0016365) #13	Ccdc69 (MGP_CAROLIEiJ_G0016366) #14	Gm2a (MGP_CAROLIEiJ_G0016367) #15	Slc36a3 (MGP_CAROLIEiJ_G0016368) #16	Slc36a2 (MGP_CAROLIEiJ_G0016369) #17	Slc36a1 (MGP_CAROLIEiJ_G0016370) #18	Fat2 (MGP_CAROLIEiJ_G0016371) #19	Sparc (MGP_CAROLIEiJ_G0016372) #20	Atox1 (MGP_CAROLIEiJ_G0016373) #21	G3bp1 (MGP_CAROLIEiJ_G0016374) #22	Glra1 (MGP_CAROLIEiJ_G0016375) #23	Nmur2 (MGP_CAROLIEiJ_G0016376) #24	Gria1 (MGP_CAROLIEiJ_G0016377) #25	Fam114a2 (MGP_CAROLIEiJ_G0016378) #26	Mfap3 (MGP_CAROLIEiJ_G0016379) #27	Galnt10 (MGP_CAROLIEiJ_G0016380) #28	Sap30l (MGP_CAROLIEiJ_G0016381) #29	Hand1 (MGP_CAROLIEiJ_G0016382) #30	Larp1 (MGP_CAROLIEiJ_G0016383) #31	Cnot8 (MGP_CAROLIEiJ_G0016384) #32	Gemin5 (MGP_CAROLIEiJ_G0016385) #33	Mrpl22 (MGP_CAROLIEiJ_G0016386) #34	MGP_CAROLIEiJ_G0016387	MGP_CAROLIEiJ_G0016388 #36	MGP_CAROLIEiJ_G0016389 #37
Mus_A	ANCESTRAL SPECIES																	ENSGT00390000011365.a.sb.b ##22
Mus_B	ANCESTRAL SPECIES																	ENSGT00390000011365.a.sb.b ##22
Mus_C	ANCESTRAL SPECIES																	ENSGT00390000011365.a.sb.b ##22
Steppe mouse	MODERN SPECIES	3308													Ncald (ENSMSIG00000015269)	ENSMSIG00000015305	Grhl2 (ENSMSIG00000015315)	ENSMSIG00000015430 ##22	ENSMSIG00000015453	ENSMSIG00000015497	Ywhaz (ENSMSIG00000015504)	ENSMSIG00000015546	ENSMSIG00000015548	Pabpc1 (ENSMSIG00000015570)	Snx31 (ENSMSIG00000015612)	ENSMSIG00000015663	Rnf19a (ENSMSIG00000015703)	Spag1 (ENSMSIG00000015763)	ENSMSIG00000015808	Fbxo43 (ENSMSIG00000015840)	Rgs22 (ENSMSIG00000015850)	ENSMSIG00000015927	Cox6c (ENSMSIG00000015963)
Mus_A	ANCESTRAL SPECIES																	ENSGT00390000011365.a.tb ##22
Mus_B	ANCESTRAL SPECIES																	ENSGT00390000011365.a.tb ##22
Mus_C	ANCESTRAL SPECIES																	ENSGT00390000011365.a.tb ##22
Steppe mouse	MODERN SPECIES	3164																ENSMSIG00000010609 ##22	ENSMSIG00000010588
Shrew mouse	MODERN SPECIES	5	Rapgef6 (MGP_PahariEiJ_G0017494) #7	Cdc42se2 (MGP_PahariEiJ_G0017495) #8	Lyrm7 (MGP_PahariEiJ_G0017496) #9	Hint1 (MGP_PahariEiJ_G0017497) #10	MGP_PahariEiJ_G0017498 #11	Tnip1 (MGP_PahariEiJ_G0017499) #12	Anxa6 (MGP_PahariEiJ_G0017500) #13	Ccdc69 (MGP_PahariEiJ_G0017501) #14	Gm2a (MGP_PahariEiJ_G0017502) #15	Slc36a3 (MGP_PahariEiJ_G0017503) #16	MGP_PahariEiJ_G0017504 #17	Slc36a1 (MGP_PahariEiJ_G0017505) #18	Fat2 (MGP_PahariEiJ_G0017506) #19	Sparc (MGP_PahariEiJ_G0017507) #20	Atox1 (MGP_PahariEiJ_G0017508) #21	G3bp1 (MGP_PahariEiJ_G0017509) #22	Glra1 (MGP_PahariEiJ_G0017510) #23	Nmur2 (MGP_PahariEiJ_G0017511) #24	Gria1 (MGP_PahariEiJ_G0017512) #25	Fam114a2 (MGP_PahariEiJ_G0017513) #26	Mfap3 (MGP_PahariEiJ_G0017514) #27	Galnt10 (MGP_PahariEiJ_G0017515) #28	Sap30l (MGP_PahariEiJ_G0017516) #29	Hand1 (MGP_PahariEiJ_G0017517) #30	Larp1 (MGP_PahariEiJ_G0017518) #31	Cnot8 (MGP_PahariEiJ_G0017519) #32	Gemin5 (MGP_PahariEiJ_G0017520) #33	Mrpl22 (MGP_PahariEiJ_G0017521) #34	MGP_PahariEiJ_G0017522	MGP_PahariEiJ_G0017523 #36	MGP_PahariEiJ_G0017524 #37
Rat	DUPLICATION
Rat	MODERN SPECIES	1	Rapgef6 (ENSRNOG00000009995) #7	Cdc42se2-ps1 (ENSRNOG00000042449) #8	Lyrm7 (ENSRNOG00000045961) #9	Tnip1 (ENSRNOG00000010370) #12	Anxa6 (ENSRNOG00000010668) #13	LOC100362400 (ENSRNOG00000064427)	Ybx1-ps20 (ENSRNOG00000032902)	Ccdc69 (ENSRNOG00000021370) #14	Gm2a (ENSRNOG00000052219) #15	Slc36a3 (ENSRNOG00000021310) #16	Slc36a2 (ENSRNOG00000011892) #17	Slc36a1 (ENSRNOG00000012356) #18	Fat2 (ENSRNOG00000012575) #19	Sparc (ENSRNOG00000012840) #20	Atox1 (ENSRNOG00000013118) #21	G3bp1 (ENSRNOG00000013186) #22	Glra1 (ENSRNOG00000013588) #23	RGD1563668 (ENSRNOG00000038478)	Nmur2 (ENSRNOG00000014081) #24	LOC102552619 (ENSRNOG00000027803)	LOC120095104 (ENSRNOG00000062939)	LOC102552882 (ENSRNOG00000038474)	ENSRNOG00000069020	Gria1 (ENSRNOG00000045816) #25	Fam114a2 (ENSRNOG00000002423) #26	Mfap3 (ENSRNOG00000002443) #27	Galnt10 (ENSRNOG00000002488) #28	Sap30l (ENSRNOG00000002575) #29	Hand1 (ENSRNOG00000002582) #30	Larp1 (ENSRNOG00000031544) #31	Atp5mk-ps2 (ENSRNOG00000042869)
Rat	MODERN SPECIES	14	LOC120102505 (ENSRNOG00000042804)	Grm7 (ENSRNOG00000005662)	Edem1 (ENSRNOG00000055365)	Arl8b (ENSRNOG00000055860)	Bhlhe40 (ENSRNOG00000007152)	AABR07061707.1 (ENSRNOG00000052718)	Itpr1 (ENSRNOG00000007104)	Sumf1 (ENSRNOG00000006813)	Setmar (ENSRNOG00000006806)	Lrrn1 (ENSRNOG00000006802)	Crbn (ENSRNOG00000006534)	Trnt1 (ENSRNOG00000006432)	Il5ra (ENSRNOG00000005954)	Cntn4 (ENSRNOG00000005652)	Cntn6 (ENSRNOG00000032517)	AABR07061614.1 (ENSRNOG00000032820) #22	ENSRNOG00000065903	Chl1 (ENSRNOG00000045771)	Cntn3 (ENSRNOG00000006144)	Pdzrn3 (ENSRNOG00000057556)	Ppp4r2 (ENSRNOG00000024647)	Gxylt2 (ENSRNOG00000005621)	Actg1-ps9 (ENSRNOG00000062691)	Shq1 (ENSRNOG00000005433)	LOC120102351 (ENSRNOG00000005353)	LOC120102174 (ENSRNOG00000033673)	Prok2 (ENSRNOG00000010898)	Ier3ip1-ps1 (ENSRNOG00000030004)	Gpr27 (ENSRNOG00000010880)	Eif4e3 (ENSRNOG00000010301)	Foxp1 (ENSRNOG00000009184)
Cricetidae	ANCESTRAL SPECIES		ENSGT00940000158124 #7	ENSGT00940000158245 #8	ENSGT00390000017923 #9	ENSGT00940000154451 #10	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000162517 #21	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00950000183007.a.b.g.a.b.b.i ##36	ENSGT00950000183007.a.b.g.b.d.a #35
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00940000158124 #7	ENSGT00940000158245 #8	ENSGT00390000017923 #9	ENSGT00940000154451 #10	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000162517 #21	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00950000183007.a.b.g.b.d.a #35	ENSGT00950000183007.a.b.g.a.b.b.i ##36
Northern American deer mouse	MODERN SPECIES	21	Rapgef6 (ENSPEMG00000018231) #7	Cdc42se2 (ENSPEMG00000028684) #8	Lyrm7 (ENSPEMG00000015408) #9	Hint1 (ENSPEMG00000026673) #10	Gpx3 (ENSPEMG00000020568) #11	Tnip1 (ENSPEMG00000020685) #12	Anxa6 (ENSPEMG00000001728) #13	Ccdc69 (ENSPEMG00000020807) #14	Gm2a (ENSPEMG00000024547) #15	Slc36a3 (ENSPEMG00000014810) #16	Slc36a2 (ENSPEMG00000006570) #17	Slc36a1 (ENSPEMG00000027621) #18	Fat2 (ENSPEMG00000010255) #19	Sparc (ENSPEMG00000022374) #20	Atox1 (ENSPEMG00000015125) #21	G3bp1 (ENSPEMG00000020531) #22	Glra1 (ENSPEMG00000024408) #23	Nmur2 (ENSPEMG00000013761) #24	Gria1 (ENSPEMG00000020992) #25	Fam114a2 (ENSPEMG00000020352) #26	Mfap3 (ENSPEMG00000029755) #27	Galnt10 (ENSPEMG00000021112) #28	Sap30l (ENSPEMG00000029956) #29	Hand1 (ENSPEMG00000021867) #30	Larp1 (ENSPEMG00000022523) #31	Cnot8 (ENSPEMG00000021153) #32	Gemin5 (ENSPEMG00000014992) #33	Mrpl22 (ENSPEMG00000021188) #34	ENSPEMG00000028084 ##36	ENSPEMG00000028532	ENSPEMG00000028425 #36
Prairie vole	MODERN SPECIES	15	Rapgef6 (ENSMOCG00000002583) #7	Cdc42se2 (ENSMOCG00000019753) #8	ENSMOCG00000021969 #9	Hint1 (ENSMOCG00000015219) #10	Gpx3 (ENSMOCG00000012707) #11	Tnip1 (ENSMOCG00000019037) #12	Anxa6 (ENSMOCG00000022776) #13	Ccdc69 (ENSMOCG00000001057) #14	Gm2a (ENSMOCG00000021206) #15	Slc36a3 (ENSMOCG00000022181) #16	Slc36a2 (ENSMOCG00000019153) #17	Slc36a1 (ENSMOCG00000018359) #18	Fat2 (ENSMOCG00000004996) #19	Sparc (ENSMOCG00000014197) #20	Atox1 (ENSMOCG00000012051) #21	G3bp1 (ENSMOCG00000005709) #22	Glra1 (ENSMOCG00000022733) #23	Nmur2 (ENSMOCG00000020916) #24	Gria1 (ENSMOCG00000022383) #25	Fam114a2 (ENSMOCG00000003408) #26	Mfap3 (ENSMOCG00000022737) #27	Galnt10 (ENSMOCG00000022339) #28	Sap30l (ENSMOCG00000005889) #29	Hand1 (ENSMOCG00000012912) #30	Larp1 (ENSMOCG00000008920) #31	Gm12248 (ENSMOCG00000018783)	ENSMOCG00000002156 #32	Gemin5 (ENSMOCG00000018131) #33	Mrpl22 (ENSMOCG00000021016) #34	ENSMOCG00000014171 #35	Irgm2 (ENSMOCG00000012064) #36
Cricetinae	ANCESTRAL SPECIES		ENSGT00940000158124 #7	ENSGT00940000158245 #8	ENSGT00390000017923 #9	ENSGT00940000154451 #10	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000162517 #21	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00950000183007.a.b.g.a.b.b.i ##36	ENSGT00950000183007.a.b.g.b.d.a #35
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	229	Rapgef6 (ENSCGRG00001017839) #7	Cdc42se2 (ENSCGRG00001011403) #8	Lyrm7 (ENSCGRG00001013810) #9	Hint1 (ENSCGRG00001023991) #10	Gpx3 (ENSCGRG00001021713) #11	Tnip1 (ENSCGRG00001024112) #12	Anxa6 (ENSCGRG00001009081) #13	Ccdc69 (ENSCGRG00001012272) #14	Gm2a (ENSCGRG00001013028) #15	Slc36a3 (ENSCGRG00001004759) #16	Slc36a2 (ENSCGRG00001000746) #17	Slc36a1 (ENSCGRG00001006530) #18	Fat2 (ENSCGRG00001009133) #19	Sparc (ENSCGRG00001018155) #20	Atox1 (ENSCGRG00001013451) #21	ENSCGRG00001015623 #22	Glra1 (ENSCGRG00001018124) #23	ENSCGRG00001021201	Nmur2 (ENSCGRG00001022445) #24	Gria1 (ENSCGRG00001010996) #25	ENSCGRG00001021245	Fam114a2 (ENSCGRG00001019860) #26	Mfap3 (ENSCGRG00001023022) #27	Galnt10 (ENSCGRG00001024161) #28	Sap30l (ENSCGRG00001023382) #29	Hand1 (ENSCGRG00001013396) #30	Larp1 (ENSCGRG00001016913) #31	Gm12248 (ENSCGRG00001013725)	Cnot8 (ENSCGRG00001014687) #32	Gemin5 (ENSCGRG00001019095) #33	Mrpl22 (ENSCGRG00001019966) #34
Chinese hamster chok1gshd	MODERN SPECIES	3	ENSCGRG00001010070	Mbnl2 (ENSCGRG00001015686)	Oxgr1 (ENSCGRG00001004650)	Hs6st3 (ENSCGRG00001019622)	Uggt2 (ENSCGRG00001016376)	Dnajc3 (ENSCGRG00001016665)	Dzip1 (ENSCGRG00001024642)	Cldn10 (ENSCGRG00001018980)	Abcc4 (ENSCGRG00001005625)	ENSCGRG00001022896	Sox21 (ENSCGRG00001001959)	Gpr180 (ENSCGRG00001013522)	Tgds (ENSCGRG00001000527)	Dct (ENSCGRG00001019389)	Gpc6 (ENSCGRG00001014308)	ENSCGRG00001022279 #22	Gpc5 (ENSCGRG00001012658)	ENSCGRG00001014085	ENSCGRG00001000596	Slitrk5 (ENSCGRG00001006071)	Slitrk6 (ENSCGRG00001002482)	Slitrk1 (ENSCGRG00001002013)	Trim52 (ENSCGRG00001002565)	ENSCGRG00001007508	Spry2 (ENSCGRG00001006571)	Ndfip2 (ENSCGRG00001023296)	Rbm26 (ENSCGRG00001018743)	Obi1 (ENSCGRG00001023032)	Pou4f1 (ENSCGRG00001018351)	ENSCGRG00001002516	Ednrb (ENSCGRG00001000051)
Chinese hamster chok1gshd	MODERN SPECIES	284	Myo5a (ENSCGRG00001016350)	Myo5c (ENSCGRG00001004401)	Gnb5 (ENSCGRG00001012527)	ENSCGRG00001021399	ENSCGRG00001019175	Leo1 (ENSCGRG00001021688)	Tmod3 (ENSCGRG00001015113)	Tmod2 (ENSCGRG00001012835)	Lysmd2 (ENSCGRG00001007594)	Scg3 (ENSCGRG00001003651)	Bmp5 (ENSCGRG00001018423)	Hmgcll1 (ENSCGRG00001014320)	ENSCGRG00001012775	Gfral (ENSCGRG00001004854)	Hcrtr2 (ENSCGRG00001024668)	ENSCGRG00001024004 #22	Fam83b (ENSCGRG00001020454)	Tinag (ENSCGRG00001001754)	Mlip (ENSCGRG00001019082)	Lrrc1 (ENSCGRG00001007045)	Klhl31 (ENSCGRG00001022670)	Gclc (ENSCGRG00001020917)	ELOVL5 (ENSCGRG00001012477)	Gcm1 (ENSCGRG00001024591)	Fbxo9 (ENSCGRG00001024064)	Cilk1 (ENSCGRG00001019252)	Gsta4 (ENSCGRG00001017948)	ENSCGRG00001003804	ENSCGRG00001024170	ENSCGRG00001004595	ENSCGRG00001015955
Golden Hamster	MODERN SPECIES	627	Fnip1 (ENSMAUG00000008472)	Rapgef6 (ENSMAUG00000010508) #7	ENSMAUG00000015029	Lyrm7 (ENSMAUG00000015188) #9	Hint1 (ENSMAUG00000003917) #10	Gpx3 (ENSMAUG00000002070) #11	Tnip1 (ENSMAUG00000010278) #12	Anxa6 (ENSMAUG00000008199) #13	Gm2a (ENSMAUG00000007969) #15	Slc36a3 (ENSMAUG00000010340) #16	Slc36a2 (ENSMAUG00000012050) #17	Slc36a1 (ENSMAUG00000008064) #18	Fat2 (ENSMAUG00000001659) #19	Sparc (ENSMAUG00000015053) #20	Atox1 (ENSMAUG00000011916) #21	G3bp1 (ENSMAUG00000008655) #22	Glra1 (ENSMAUG00000001329) #23	ENSMAUG00000022058	Nmur2 (ENSMAUG00000001459) #24	Gria1 (ENSMAUG00000022238) #25	Fam114a2 (ENSMAUG00000003829) #26	Mfap3 (ENSMAUG00000022064) #27	Galnt10 (ENSMAUG00000022260) #28	Sap30l (ENSMAUG00000001548) #29	Hand1 (ENSMAUG00000022272) #30	Larp1 (ENSMAUG00000001385) #31	Gm12248 (ENSMAUG00000021997)	ENSMAUG00000022252 #32	Gemin5 (ENSMAUG00000005361) #33	Mrpl22 (ENSMAUG00000021980) #34	Igtp (ENSMAUG00000010911) #35
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	1606		Cdc42se2 (ENSNGAG00000017742) #8	Lyrm7 (ENSNGAG00000022092) #9	Hint1 (ENSNGAG00000016071) #10	Gpx3 (ENSNGAG00000023218) #11	Tnip1 (ENSNGAG00000019234) #12	Anxa6 (ENSNGAG00000001390) #13	Ccdc69 (ENSNGAG00000004298) #14	Gm2a (ENSNGAG00000006698) #15	Slc36a3 (ENSNGAG00000000782) #16	Slc36a2 (ENSNGAG00000019725) #17	Slc36a1 (ENSNGAG00000018121) #18	Fat2 (ENSNGAG00000005998) #19	Sparc (ENSNGAG00000019526) #20	Atox1 (ENSNGAG00000019105) #21	G3bp1 (ENSNGAG00000010742) #22	Glra1 (ENSNGAG00000006117) #23
Upper Galilee mountains blind mole rat	MODERN SPECIES	1698												ENSNGAG00000023820	ENSNGAG00000022145	Olfm4 (ENSNGAG00000013517)	Pcdh8 (ENSNGAG00000000936)	ENSNGAG00000023431 #22	Cnmd (ENSNGAG00000022665)	Sugt1 (ENSNGAG00000021964)	Elf1 (ENSNGAG00000023108)	Wbp4 (ENSNGAG00000024369)	Kbtbd6 (ENSNGAG00000012119)	Kbtbd7 (ENSNGAG00000011545)	Mtrf1 (ENSNGAG00000014460)	Naa16 (ENSNGAG00000004140)	Rgcc (ENSNGAG00000022423)	Vwa8 (ENSNGAG00000010244)	Dgkh (ENSNGAG00000024075)	Akap11 (ENSNGAG00000010398)	Tnfsf11 (ENSNGAG00000023783)	ENSNGAG00000009242	Fam216b (ENSNGAG00000008030)
Lesser Egyptian jerboa	MODERN SPECIES	133	Sec24a (ENSJJAG00000021996)	N4bp3 (ENSJJAG00000023037)	Rmnd5b (ENSJJAG00000017175)	Nhp2 (ENSJJAG00000016469)	Hnrnpab (ENSJJAG00000022240)	Phykpl (ENSJJAG00000014498)	Col23a1 (ENSJJAG00000020773)	Clk4 (ENSJJAG00000014522)	Zfp354a (ENSJJAG00000001494)	Prop1 (ENSJJAG00000018429)	Zfp354b (ENSJJAG00000018840)	Zfp2 (ENSJJAG00000005258)	Zfp454 (ENSJJAG00000005501)	Grm6 (ENSJJAG00000010828)	Zfp354c (ENSJJAG00000015911)	G3bp1 (ENSJJAG00000017035) #22	Glra1 (ENSJJAG00000010424) #23	ENSJJAG00000016616	Nmur2 (ENSJJAG00000006251) #24	Gria1 (ENSJJAG00000011336) #25	Fam114a2 (ENSJJAG00000018239) #26	Mfap3 (ENSJJAG00000011608) #27	Galnt10 (ENSJJAG00000011786) #28	Sap30l (ENSJJAG00000024095) #29	Hand1 (ENSJJAG00000023893) #30
Kangaroo rat	MODERN SPECIES	495	ENSDORG00000012701 #7	Cdc42se2 (ENSDORG00000027349) #8	Lyrm7 (ENSDORG00000026901) #9	ENSDORG00000011944 #10	Gpx3 (ENSDORG00000028624) #11	Tnip1 (ENSDORG00000006740) #12	Anxa6 (ENSDORG00000016572) #13	ENSDORG00000016699 #14	Gm2a (ENSDORG00000012628) #15	Slc36a3 (ENSDORG00000012630) #16	Slc36a2 (ENSDORG00000012631) #17	Slc36a1 (ENSDORG00000012735) #18	Fat2 (ENSDORG00000023995) #19	Sparc (ENSDORG00000001562) #20	Atox1 (ENSDORG00000002944) #21	G3bp1 (ENSDORG00000025959) #22	Glra1 (ENSDORG00000012396) #23	Nmur2 (ENSDORG00000024711) #24
Rodentia_A	ANCESTRAL SPECIES	7	ENSGT00940000158124 #7	ENSGT00940000158245 #8	ENSGT00390000017923 #9	ENSGT00940000154451 #10	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000162517 #21	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Sciuridae	ANCESTRAL SPECIES	33	ENSGT00940000158124 #7	ENSGT00940000158245 #8	ENSGT00390000017923 #9	ENSGT00940000154451 #10	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000162517 #21	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d.a #24	ENSGT01100000263484.A.d.b #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Marmotini	ANCESTRAL SPECIES	38	ENSGT00940000158245 #8	ENSGT00390000017923 #9	ENSGT00940000154451 #10	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00940000154772.bb	ENSGT00510000046787.e.b #20	ENSGT00940000162517 #21	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d.a #24	ENSGT01100000263484.A.d.b #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Marmotini_b	ANCESTRAL SPECIES	96									ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00940000154772.bb	ENSGT00510000046787.e.b #20	ENSGT00940000162517 #21	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d.a #24	ENSGT01100000263484.A.d.b #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Arctic ground squirrel	MODERN SPECIES	57										SLC36A2 (ENSUPAG00010018020) #17	SLC36A1 (ENSUPAG00010018012) #18	FAT2 (ENSUPAG00010017980) #19	ENSUPAG00010017975	SPARC (ENSUPAG00010017938) #20	ENSUPAG00010017925 #21	G3BP1 (ENSUPAG00010017917) #22	GLRA1 (ENSUPAG00010017888) #23	ENSUPAG00010017877 #24	ENSUPAG00010017870 #24	GRIA1 (ENSUPAG00010017762) #25	FAM114A2 (ENSUPAG00010017716) #26	MFAP3 (ENSUPAG00010017713) #27	GALNT10 (ENSUPAG00010017696) #28	ENSUPAG00010017692	SAP30L (ENSUPAG00010017689) #29	HAND1 (ENSUPAG00010017683) #30	LARP1 (ENSUPAG00010017672) #31	FAXDC2 (ENSUPAG00010017661)	CNOT8 (ENSUPAG00010017652) #32	GEMIN5 (ENSUPAG00010017079) #33	MRPL22 (ENSUPAG00010017071) #34
Squirrel	DUPLICATION
Squirrel	MODERN SPECIES	115									SLC36A3 (ENSSTOG00000006878) #16	SLC36A2 (ENSSTOG00000006895) #17	SLC36A1 (ENSSTOG00000006917) #18	FAT2 (ENSSTOG00000019388) #19	ENSSTOG00000029374	SPARC (ENSSTOG00000007002) #20	ATOX1 (ENSSTOG00000029382) #21	G3BP1 (ENSSTOG00000015928) #22	GLRA1 (ENSSTOG00000015938) #23	ENSSTOG00000000400 #24	ENSSTOG00000020908 #24	GRIA1 (ENSSTOG00000008747) #25	FAM114A2 (ENSSTOG00000006924) #26	MFAP3 (ENSSTOG00000006964) #27	GALNT10 (ENSSTOG00000008893) #28	SAP30L (ENSSTOG00000020584) #29	HAND1 (ENSSTOG00000025850) #30	LARP1 (ENSSTOG00000005678) #31	FAXDC2 (ENSSTOG00000005732)	ENSSTOG00000005745 #32	GEMIN5 (ENSSTOG00000005759) #33	MRPL22 (ENSSTOG00000005822) #34	SGCD (ENSSTOG00000004356)
Squirrel	MODERN SPECIES	102	FUNDC1 (ENSSTOG00000025782)	EFHC2 (ENSSTOG00000014917)	NDP (ENSSTOG00000010960)	MAOB (ENSSTOG00000004985)	MAOA (ENSSTOG00000004958)	GPR82 (ENSSTOG00000028760)	GPR34 (ENSSTOG00000001566)	CASK (ENSSTOG00000005927)	NYX (ENSSTOG00000027262)	ENSSTOG00000029381	DDX3X (ENSSTOG00000008094)	USP9X (ENSSTOG00000000797)	MED14 (ENSSTOG00000022333)	CXorf38 (ENSSTOG00000005469)	MPC1L (ENSSTOG00000026402)	ENSSTOG00000031229 #22	ATP6AP2 (ENSSTOG00000005456)	BCOR (ENSSTOG00000003219)	MID1IP1 (ENSSTOG00000027194)	TSPAN7 (ENSSTOG00000012077)	ENSSTOG00000019432	OTC (ENSSTOG00000004056)	ENSSTOG00000022470	SRPX (ENSSTOG00000007767)	ENSSTOG00000023192	SYTL5 (ENSSTOG00000029210)	DYNLT3 (ENSSTOG00000028818)	CYBB (ENSSTOG00000019548)	XK (ENSSTOG00000021262)	LANCL3 (ENSSTOG00000012636)	ENSSTOG00000021050
Alpin marmot	DUPLICATION
Alpin marmot	DUPLICATION
Alpin marmot	MODERN SPECIES	31	CDC42SE2 (ENSMMMG00000014356) #8	LYRM7 (ENSMMMG00000014350) #9	HINT1 (ENSMMMG00000014343) #10	GPX3 (ENSMMMG00000014332) #11	TNIP1 (ENSMMMG00000014297) #12	ANXA6 (ENSMMMG00000014262) #13	CCDC69 (ENSMMMG00000014256) #14	GM2A (ENSMMMG00000014247) #15	SLC36A3 (ENSMMMG00000014222) #16	SLC36A2 (ENSMMMG00000014208) #17	SLC36A1 (ENSMMMG00000014187) #18	FAT2 (ENSMMMG00000014141) #19	ENSMMMG00000014108	SPARC (ENSMMMG00000014038) #20	ATOX1 (ENSMMMG00000014027) #21	ENSMMMG00000014015 #22	GLRA1 (ENSMMMG00000013990) #23	ENSMMMG00000013969 #24	ENSMMMG00000013957 #24	GRIA1 (ENSMMMG00000013882) #25	FAM114A2 (ENSMMMG00000013837) #26	MFAP3 (ENSMMMG00000013826) #27	GALNT10 (ENSMMMG00000013815) #28	SAP30L (ENSMMMG00000013804) #29	HAND1 (ENSMMMG00000013794) #30	LARP1 (ENSMMMG00000013777) #31	FAXDC2 (ENSMMMG00000013743)	CNOT8 (ENSMMMG00000013723) #32	GEMIN5 (ENSMMMG00000013554) #33	MRPL22 (ENSMMMG00000013526) #34	SGCD (ENSMMMG00000013502)
Alpin marmot	MODERN SPECIES	6	BMP10 (ENSMMMG00000005486)	ENSMMMG00000005514	ARHGAP25 (ENSMMMG00000005520)	ENSMMMG00000005553	APLF (ENSMMMG00000005578)	FBXO48 (ENSMMMG00000005580)	PLEK (ENSMMMG00000005592)	CNRIP1 (ENSMMMG00000005618)	ENSMMMG00000005630	PPP3R1 (ENSMMMG00000005651)	PNO1 (ENSMMMG00000005661)	DNAAF10 (ENSMMMG00000005668)	C1D (ENSMMMG00000005685)	ETAA1 (ENSMMMG00000005704)	ENSMMMG00000005754	ENSMMMG00000005757 #22	MEIS1 (ENSMMMG00000005763)	ENSMMMG00000005870	ENSMMMG00000005873	SPRED2 (ENSMMMG00000005882)	ENSMMMG00000005906	ACTR2 (ENSMMMG00000005910)	RAB1A (ENSMMMG00000005929)	CEP68 (ENSMMMG00000005980)	SLC1A4 (ENSMMMG00000006026)	ENSMMMG00000006042	ENSMMMG00000006048	AFTPH (ENSMMMG00000006097)	LGALSL (ENSMMMG00000006152)	PELI1 (ENSMMMG00000006175)	VPS54 (ENSMMMG00000006188)
Alpin marmot	MODERN SPECIES	21	ENSMMMG00000011611	EFHC2 (ENSMMMG00000011586)	NDP (ENSMMMG00000011581)	MAOB (ENSMMMG00000011245)	MAOA (ENSMMMG00000011225)	ENSMMMG00000011202	GPR82 (ENSMMMG00000011172)	GPR34 (ENSMMMG00000011165)	CASK (ENSMMMG00000010916)	ENSMMMG00000010906	ENSMMMG00000010902	DDX3X (ENSMMMG00000010865)	USP9X (ENSMMMG00000010802)	MED14 (ENSMMMG00000010703)	MPC1L (ENSMMMG00000010695)	ENSMMMG00000010690 #22	ATP6AP2 (ENSMMMG00000010656)	BCOR (ENSMMMG00000010519)	TSPAN7 (ENSMMMG00000010451)	ENSMMMG00000010431	OTC (ENSMMMG00000010392)	ENSMMMG00000010133	SRPX (ENSMMMG00000010108)	SYTL5 (ENSMMMG00000010054)	ENSMMMG00000010049	DYNLT3 (ENSMMMG00000010004)	ENSMMMG00000010001	ENSMMMG00000009990	XK (ENSMMMG00000009986)	ENSMMMG00000009942	ENSMMMG00000009939
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	15	GPX3 (ENSSVLG00005017890) #11	TNIP1 (ENSSVLG00005017789) #12	ANXA6 (ENSSVLG00005017644) #13	ENSSVLG00005017588	CCDC69 (ENSSVLG00005017553) #14	GM2A (ENSSVLG00005017524) #15	ENSSVLG00005017465	ENSSVLG00005017410	SLC36A3 (ENSSVLG00005017282) #16	SLC36A2 (ENSSVLG00005017051) #17	SLC36A1 (ENSSVLG00005016940) #18	FAT2 (ENSSVLG00005016721) #19	SPARC (ENSSVLG00005016618) #20	ENSSVLG00005016582	ATOX1 (ENSSVLG00005016532) #21	G3BP1 (ENSSVLG00005016419) #22	GLRA1 (ENSSVLG00005016273) #23	ENSSVLG00005016196 #24	ENSSVLG00005016055 #24	GRIA1 (ENSSVLG00005015406) #25	FAM114A2 (ENSSVLG00005015140) #26	MFAP3 (ENSSVLG00005015093) #27	GALNT10 (ENSSVLG00005014997) #28	SAP30L (ENSSVLG00005014870) #29	HAND1 (ENSSVLG00005014827) #30	LARP1 (ENSSVLG00005014609) #31	FAXDC2 (ENSSVLG00005014397)	ENSSVLG00005014312 #32	GEMIN5 (ENSSVLG00005014245) #33	MRPL22 (ENSSVLG00005014120) #34	ENSSVLG00005014086
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	15	MTMR12 (ENSSVLG00005009608)	ENSSVLG00005009918	ENSSVLG00005009950	ENSSVLG00005009985	ENSSVLG00005010049	ENSSVLG00005010088	C5orf22 (ENSSVLG00005010112)	DROSHA (ENSSVLG00005010155)	CDH6 (ENSSVLG00005010203)	ENSSVLG00005010345	ENSSVLG00005010365	CDH9 (ENSSVLG00005010433)	ENSSVLG00005010505	ENSSVLG00005010536	CDH10 (ENSSVLG00005010571)	ENSSVLG00005010682 #22	ENSSVLG00005010723	ENSSVLG00005010760	CDH12 (ENSSVLG00005010824)	ENSSVLG00005004196	ENSSVLG00005004221	CDH18 (ENSSVLG00005004254)	ENSSVLG00005004307	ENSSVLG00005004321	MYO10 (ENSSVLG00005004378)	RETREG1 (ENSSVLG00005004440)	ZNF622 (ENSSVLG00005004487)	MARCHF11 (ENSSVLG00005004512)	FBXL7 (ENSSVLG00005004530)	ANKH (ENSSVLG00005004559)	OTULIN (ENSSVLG00005004587)
Eurasian red squirrel	MODERN SPECIES	4	CABLES1 (ENSSVLG00005006471)	RBBP8 (ENSSVLG00005006206)	ENSSVLG00005006159	GATA6 (ENSSVLG00005006119)	MIB1 (ENSSVLG00005006032)	ABHD3 (ENSSVLG00005005968)	SNRPD1 (ENSSVLG00005005913)	ENSSVLG00005005902	ESCO1 (ENSSVLG00005005870)	ENSSVLG00005005830	GREB1L (ENSSVLG00005005519)	ENSSVLG00005005411	ENSSVLG00005005395	ENSSVLG00005005351	ENSSVLG00005023520	ENSSVLG00005023492 #22	ENSSVLG00005023478	ROCK1 (ENSSVLG00005023445)	USP14 (ENSSVLG00005023043)	THOC1 (ENSSVLG00005022810)	ENSSVLG00005022749	COLEC12 (ENSSVLG00005022720)	CETN1 (ENSSVLG00005022708)	CLUL1 (ENSSVLG00005022648)	ENSSVLG00005022566	ENOSF1 (ENSSVLG00005022213)	ENSSVLG00005022001	ADCYAP1 (ENSSVLG00005021960)	ENSSVLG00005021938	ENSSVLG00005021834	NDC80 (ENSSVLG00005021715)
Hystricomorpha	ANCESTRAL SPECIES	30	ENSGT00950000182869.e.a.b	ENSGT00940000159831	ENSGT00390000012652.ab.a.m	ENSGT00390000012652.bb	ENSGT00550000074618.a.a	ENSGT00940000161317	ENSGT00940000156580	ENSGT00940000157177	ENSGT00940000158570	ENSGT00940000160154	ENSGT00950000182924.B.a.b	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000162517 #21	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577.l #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Naked mole-rat female	MODERN SPECIES	23	TCF7 (ENSHGLG00000047039)	ENSHGLG00000046526	PPP2CA (ENSHGLG00000049249)	ENSHGLG00000018175	UBE2B (ENSHGLG00000015894)	CDKN2AIPNL (ENSHGLG00000015833)	ENSHGLG00000043843	SAR1B (ENSHGLG00000047696)	ENSHGLG00000016500	ENSHGLG00000045552	ENSHGLG00000041388 #18	ENSHGLG00000015818 #19	SPARC (ENSHGLG00000016693) #20	ATOX1 (ENSHGLG00000015116) #21	ENSHGLG00000033423	G3BP1 (ENSHGLG00000014921) #22	GLRA1 (ENSHGLG00000016730) #23	ENSHGLG00000046430	NMUR2 (ENSHGLG00000016664) #24	ENSHGLG00000040393	ENSHGLG00000049292	GRIA1 (ENSHGLG00000008564) #25	FAM114A2 (ENSHGLG00000005817) #26	MFAP3 (ENSHGLG00000012228) #27	GALNT10 (ENSHGLG00000011151) #28	SAP30L (ENSHGLG00000040967) #29	HAND1 (ENSHGLG00000008657) #30	LARP1 (ENSHGLG00000006267) #31	ENSHGLG00000050510	ENSHGLG00000047467	ENSHGLG00000044881
Hystricomorpha_a	ANCESTRAL SPECIES	28	ENSGT00440000037499	ENSGT00950000182869.e.a.b	ENSGT00940000159831	ENSGT00390000012652.bb	ENSGT00550000074618.a.a	ENSGT00940000161317	ENSGT00940000156580	ENSGT00940000157177	ENSGT00940000158570	ENSGT00940000160154	ENSGT00950000182924.B.a.b	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000162517 #21	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577.l #31	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509	ENSGT00940000161609
Guinea pig	MODERN SPECIES	81	TCF7 (ENSCPOG00000020029)	SKP1 (ENSCPOG00000005164)	PPP2CA (ENSCPOG00000039543)	ENSCPOG00000007474	UBE2B (ENSCPOG00000030926)	CDKN2AIPNL (ENSCPOG00000015544)	JADE2 (ENSCPOG00000008323)	SAR1B (ENSCPOG00000038655)	SEC24A (ENSCPOG00000014716)	ENSCPOG00000023450 ##36	ENSCPOG00000034856 ##36	SLC36A1 (ENSCPOG00000014430) #18	FAT2 (ENSCPOG00000014431) #19	SPARC (ENSCPOG00000025242) #20	ATOX1 (ENSCPOG00000034767) #21	G3BP1 (ENSCPOG00000006626) #22	GLRA1 (ENSCPOG00000013725) #23	ENSCPOG00000009931 #24	KCNA4 (ENSCPOG00000039821)	FSHB (ENSCPOG00000007723)	ARL14EP (ENSCPOG00000007727)	MPPED2 (ENSCPOG00000034992)	DNAJC24 (ENSCPOG00000005159)	IMMP1L (ENSCPOG00000020043)	ELP4 (ENSCPOG00000007237)	PAX6 (ENSCPOG00000007245)	RCN1 (ENSCPOG00000033869)	WT1 (ENSCPOG00000033316)	EIF3M (ENSCPOG00000003846)	ENSCPOG00000038368	ENSCPOG00000024691
Hystricomorpha_b	DUPLICATION
Hystricomorpha_b	DUPLICATION
Hystricomorpha_b	ANCESTRAL SPECIES																	ENSGT00390000011365.a.cc.a #22
Degu	DUPLICATION
Degu	MODERN SPECIES	49	IL17RE (ENSODEG00000018313)	IL17RC (ENSODEG00000018144)	CRELD1 (ENSODEG00000018113)	PRRT3 (ENSODEG00000018225)	EMC3 (ENSODEG00000018222)	FANCD2 (ENSODEG00000018239)	FANCD2OS (ENSODEG00000020518)	BRK1 (ENSODEG00000018259)	VHL (ENSODEG00000018122)	IRAK2 (ENSODEG00000018213)	TATDN2 (ENSODEG00000018189)	GHRL (ENSODEG00000018237)	SEC13 (ENSODEG00000018136)	ATP2B2 (ENSODEG00000018205)	PNRC2 (ENSODEG00000018295)	ENSODEG00000018116 #22	COL6A5 (ENSODEG00000018227)	COL6A6 (ENSODEG00000018195)	PIK3R4 (ENSODEG00000018106)	ENSODEG00000018196	ATP2C1 (ENSODEG00000018139)	ASTE1 (ENSODEG00000018421)	NEK11 (ENSODEG00000018206)	ENSODEG00000018084	ENSODEG00000018115	ENSODEG00000018142	CPNE4 (ENSODEG00000018164)	ACP3 (ENSODEG00000018182)	DNAJC13 (ENSODEG00000018220)	ACKR4 (ENSODEG00000020509)	ACAD11 (ENSODEG00000018150)
Degu	MODERN SPECIES	186				ARMC3 (ENSODEG00000002341)	MSRB2 (ENSODEG00000002295)	PTF1A (ENSODEG00000002261)	OTUD1 (ENSODEG00000002122)	ENSODEG00000003530	KIAA1217 (ENSODEG00000003130)	ARHGAP21 (ENSODEG00000003667)	PRTFDC1 (ENSODEG00000003390)	ENSODEG00000003316	ENSODEG00000003305	ENSODEG00000003243	ENKUR (ENSODEG00000003177)	ENSODEG00000004103 #22	GPR158 (ENSODEG00000004004)	MYO3A (ENSODEG00000003447)	GAD2 (ENSODEG00000002488)	ENSODEG00000002425	ENSODEG00000002394	ENSODEG00000018879	ENSODEG00000002334	APBB1IP (ENSODEG00000002301)	PDSS1 (ENSODEG00000003307)	ABI1 (ENSODEG00000002843)	MASTL (ENSODEG00000002698)	YME1L1 (ENSODEG00000002663)	KLF6 (ENSODEG00000002443)	ENSODEG00000002426	ENSODEG00000002407
Long-tailed chinchilla	MODERN SPECIES	144	DDIT4 (ENSCLAG00000016774)	DNAJB12 (ENSCLAG00000015705)	MICU1 (ENSCLAG00000010346)	MCU (ENSCLAG00000010032)	OIT3 (ENSCLAG00000009749)	PLA2G12B (ENSCLAG00000014642)	P4HA1 (ENSCLAG00000017260)	NUDT13 (ENSCLAG00000014108)	ECD (ENSCLAG00000016794)	FAM149B1 (ENSCLAG00000010159)	DNAJC9 (ENSCLAG00000010943)	MRPS16 (ENSCLAG00000010443)	ENSCLAG00000009460	ENSCLAG00000011543	ENSCLAG00000011356	ENSCLAG00000012120 #22	PPP3CB (ENSCLAG00000016643)	USP54 (ENSCLAG00000010343)	MYOZ1 (ENSCLAG00000009444)	SYNPO2L (ENSCLAG00000011472)	ENSCLAG00000009991	FUT11 (ENSCLAG00000009545)	CHCHD1 (ENSCLAG00000012183)	ZSWIM8 (ENSCLAG00000011062)	NDST2 (ENSCLAG00000010841)	CAMK2G (ENSCLAG00000009687)	PLAU (ENSCLAG00000010993)	VCL (ENSCLAG00000009895)	AP3M1 (ENSCLAG00000010102)	ADK (ENSCLAG00000011462)	KAT6B (ENSCLAG00000012921)
Hystricomorpha_b	ANCESTRAL SPECIES																	ENSGT00390000011365.a.cc.b #22
Degu	MODERN SPECIES	70	ENSODEG00000008982	ENSODEG00000019628	CDKL3 (ENSODEG00000009715)	UBE2B (ENSODEG00000009143)	ENSODEG00000008488	ENSODEG00000019739	JADE2 (ENSODEG00000009149)	SAR1B (ENSODEG00000009764)	SEC24A (ENSODEG00000008665)	ENSODEG00000019626	SLC36A1 (ENSODEG00000010341) #18	FAT2 (ENSODEG00000010366) #19	SPARC (ENSODEG00000009746) #20	ENSODEG00000009104 #21	ENSODEG00000019553	ENSODEG00000008869 #22	GLRA1 (ENSODEG00000009543) #23	NMUR2 (ENSODEG00000009849) #24	GRIA1 (ENSODEG00000009490) #25	ENSODEG00000009084 #26	MFAP3 (ENSODEG00000009031) #27	GALNT10 (ENSODEG00000008896) #28	SAP30L (ENSODEG00000008855) #29	HAND1 (ENSODEG00000009445) #30	LARP1 (ENSODEG00000010824) #31	FAXDC2 (ENSODEG00000009137)	ENSODEG00000009965 #32	GEMIN5 (ENSODEG00000009311) #33	ENSODEG00000009212	ENSODEG00000010239	SGCD (ENSODEG00000011784)
Hystricomorpha_b	ANCESTRAL SPECIES	19	ENSGT00440000037499	ENSGT00950000182869.e.a.b	ENSGT00940000159831	ENSGT00390000012652.bb	ENSGT00550000074618.a.a	ENSGT00940000161317	ENSGT00940000156580	ENSGT00940000157177	ENSGT00940000158570	ENSGT00940000160154	ENSGT00950000182924.B.a.b	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000162517 #21	ENSGT00390000011365.a.dc #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577.l #31	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509	ENSGT00940000161609
Long-tailed chinchilla	MODERN SPECIES	115	ENSCLAG00000011602	TCF7 (ENSCLAG00000015886)	ENSCLAG00000012399	PPP2CA (ENSCLAG00000015668)	CDKL3 (ENSCLAG00000013562)	UBE2B (ENSCLAG00000015390)	CDKN2AIPNL (ENSCLAG00000015651)	JADE2 (ENSCLAG00000014619)	ENSCLAG00000015791	SEC24A (ENSCLAG00000013518)	ENSCLAG00000017958 ##36	SLC36A1 (ENSCLAG00000013787) #18	FAT2 (ENSCLAG00000015326) #19	SPARC (ENSCLAG00000012628) #20	ATOX1 (ENSCLAG00000011704) #21	G3BP1 (ENSCLAG00000012636) #22	GLRA1 (ENSCLAG00000015181) #23	GRIA1 (ENSCLAG00000017069) #25	FAM114A2 (ENSCLAG00000013645) #26	MFAP3 (ENSCLAG00000014677) #27	GALNT10 (ENSCLAG00000013273) #28	SAP30L (ENSCLAG00000011128) #29	HAND1 (ENSCLAG00000011515) #30	LARP1 (ENSCLAG00000012755) #31	FAXDC2 (ENSCLAG00000011632)	CNOT8 (ENSCLAG00000012116) #32	GEMIN5 (ENSCLAG00000011942) #33	MRPL22 (ENSCLAG00000011777) #34	SGCD (ENSCLAG00000014749)	HAVCR2 (ENSCLAG00000016115)	MED7 (ENSCLAG00000016147)
Degu	DUPLICATION
Degu	MODERN SPECIES	42	DIMT1 (ENSODEG00000016626)	ENSODEG00000016524	IPO11 (ENSODEG00000017269)	ENSODEG00000020362	ENSODEG00000017157	ENSODEG00000020425	ENSODEG00000016461	HTR1A (ENSODEG00000020427)	ENSODEG00000016704	RGS7BP (ENSODEG00000016411)	SHISAL2B (ENSODEG00000016823)	SREK1IP1 (ENSODEG00000016833)	ENSODEG00000016422	ENSODEG00000017174	ADAMTS6 (ENSODEG00000016583)	ENSODEG00000016266 #22	ENSODEG00000016993	PPWD1 (ENSODEG00000016437)	TRIM23 (ENSODEG00000016997)	TRAPPC13 (ENSODEG00000016684)	ENSODEG00000017310	NLN (ENSODEG00000016710)	ERBIN (ENSODEG00000016275)	ENSODEG00000016218	SREK1 (ENSODEG00000016450)	ENSODEG00000016202	ENSODEG00000016250	CD180 (ENSODEG00000016416)	PIK3R1 (ENSODEG00000016166)	SLC30A5 (ENSODEG00000016100)	ENSODEG00000016101
Degu	MODERN SPECIES	167	ENSODEG00000010636	ZDHHC3 (ENSODEG00000011476)	EXOSC7 (ENSODEG00000011518)	CLEC3B (ENSODEG00000010796)	CDCP1 (ENSODEG00000011634)	LARS2 (ENSODEG00000009801)	ENSODEG00000020146	LIMD1 (ENSODEG00000010780)	SACM1L (ENSODEG00000011936)	ENSODEG00000012454	ENSODEG00000011510	LZTFL1 (ENSODEG00000012308)	CCR9 (ENSODEG00000012001)	ENSODEG00000011549	ENSODEG00000019807	ENSODEG00000011464 #22	LTF (ENSODEG00000010708)	ENSODEG00000011624	ENSODEG00000010788	LRRC2 (ENSODEG00000011758)	ENSODEG00000010965	FAM240A (ENSODEG00000012493)	ALS2CL (ENSODEG00000010499)	TMIE (ENSODEG00000012279)	PRSS50 (ENSODEG00000013184)	ENSODEG00000010624	ENSODEG00000011281	MYL3 (ENSODEG00000013412)	PTH1R (ENSODEG00000011074)	CCDC12 (ENSODEG00000012202)	ENSODEG00000011621
Lagomorpha	ANCESTRAL SPECIES	3	ENSGT00390000006954	ENSGT00950000183007.a.b.g.a.b.a ##36	ENSGT00950000183007.a.b.g.b #36	ENSGT00940000162678	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000162517 #21	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509	ENSGT00940000161609
Pika	MODERN SPECIES	6314																G3BP1 (ENSOPRG00000010562) #22
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES	14	MYOZ3 (ENSOCUG00000013346)	RBM22 (ENSOCUG00000011532)	DCTN4 (ENSOCUG00000013510)	ENSOCUG00000024432 ##36	ENSOCUG00000028024 #36	ZNF300 (ENSOCUG00000037473)	ENSOCUG00000037867 #11	ANXA6 (ENSOCUG00000005379) #13	ENSOCUG00000015837 #15	SLC36A3 (ENSOCUG00000015841) #16	SLC36A2 (ENSOCUG00000015850) #17	SLC36A1 (ENSOCUG00000012093) #18	FAT2 (ENSOCUG00000012103) #19	ATOX1 (ENSOCUG00000038763) #21	SPARC (ENSOCUG00000012120) #20	ENSOCUG00000022143 #22	GLRA1 (ENSOCUG00000002648) #23	ENSOCUG00000029929	NMUR2 (ENSOCUG00000013507) #24	ENSOCUG00000024649	ENSOCUG00000031731	GRIA1 (ENSOCUG00000016780) #25	FAM114A2 (ENSOCUG00000016788) #26	MFAP3 (ENSOCUG00000027241) #27	ENSOCUG00000036053	GALNT10 (ENSOCUG00000011091) #28	SAP30L (ENSOCUG00000011095) #29	HAND1 (ENSOCUG00000011099) #30	LARP1 (ENSOCUG00000013066) #31	FAXDC2 (ENSOCUG00000013078)	CNOT8 (ENSOCUG00000027257) #32
Rabbit	DUPLICATION
Rabbit	DUPLICATION
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES	1401	ENSOCUG00000013489	TCEAL9 (ENSOCUG00000003712)	ENSOCUG00000005663	ENSOCUG00000022702	ENSOCUG00000002210	TCEAL1 (ENSOCUG00000000553)	MORF4L2 (ENSOCUG00000014778)	ENSOCUG00000014781	PLP1 (ENSOCUG00000014800)	ENSOCUG00000027425	FAM133A (ENSOCUG00000010073)	NAP1L3 (ENSOCUG00000025516)	ENSOCUG00000039408	ENSOCUG00000003437	PABPC5 (ENSOCUG00000010919)	ENSOCUG00000031835 #22	ENSOCUG00000010894	ENSOCUG00000035263	ENSOCUG00000023356	ENSOCUG00000027741	ENSOCUG00000014194	ENSOCUG00000010616	ENSOCUG00000009298	ENSOCUG00000001978	ENSOCUG00000032103	ENSOCUG00000014565	ENSOCUG00000005772	ENSOCUG00000035409	ENSOCUG00000032789	ENSOCUG00000029146	ENSOCUG00000001826
Rabbit	MODERN SPECIES	464			ENSOCUG00000016676	ENSOCUG00000031590	MTM1 (ENSOCUG00000016688)	MTMR1 (ENSOCUG00000016698)	CD99L2 (ENSOCUG00000016710)	ENSOCUG00000005986	GPR50 (ENSOCUG00000005566)	ENSOCUG00000000669	VMA21 (ENSOCUG00000015201)	ENSOCUG00000035408	ENSOCUG00000029659	CNGA2 (ENSOCUG00000009436)	ENSOCUG00000016680	ENSOCUG00000029792 #22	GABRE (ENSOCUG00000009667)	GABRA3 (ENSOCUG00000008480)	ENSOCUG00000036442	GABRQ (ENSOCUG00000007888)	ENSOCUG00000024582	CETN2 (ENSOCUG00000007897)	NSDHL (ENSOCUG00000007899)
Rabbit	MODERN SPECIES	5	GMPS (ENSOCUG00000001480)	SLC33A1 (ENSOCUG00000001478)	C3orf33 (ENSOCUG00000017756)	PLCH1 (ENSOCUG00000009260)	ENSOCUG00000029864	ENSOCUG00000030899	ENSOCUG00000036761	MME (ENSOCUG00000017924)	ENSOCUG00000038376	DHX36 (ENSOCUG00000001180)	ARHGEF26 (ENSOCUG00000001179)	ENSOCUG00000036257	ENSOCUG00000027959	RAP2B (ENSOCUG00000014398)	P2RY1 (ENSOCUG00000010828)	ENSOCUG00000024369 #22	MBNL1 (ENSOCUG00000007601)	ENSOCUG00000034635	SUCNR1 (ENSOCUG00000014135)	AADAC (ENSOCUG00000005368)	ENSOCUG00000021109	ENSOCUG00000005140	ENSOCUG00000025667	P2RY13 (ENSOCUG00000000418)	IGSF10 (ENSOCUG00000005885)	P2RY14 (ENSOCUG00000005879)	GPR171 (ENSOCUG00000005877)	MED12L (ENSOCUG00000005851)	CLRN1 (ENSOCUG00000013347)	MINDY4B (ENSOCUG00000029551)	SIAH2 (ENSOCUG00000010373)
Rabbit	MODERN SPECIES	14	TP53INP1 (ENSOCUG00000016241)	CCNE2 (ENSOCUG00000005398)	INTS8 (ENSOCUG00000005386)	DPY19L4 (ENSOCUG00000001317)	ESRP1 (ENSOCUG00000001316)	VIRMA (ENSOCUG00000016495)	RAD54B (ENSOCUG00000016478)	GEM (ENSOCUG00000001030)	CDH17 (ENSOCUG00000001029)	PDP1 (ENSOCUG00000003939)	TMEM67 (ENSOCUG00000010390)	RBM12B (ENSOCUG00000010353)	CIBAR1 (ENSOCUG00000010331)	ENSOCUG00000039147	TRIQK (ENSOCUG00000034527)	ENSOCUG00000022069 #22	RUNX1T1 (ENSOCUG00000003754)	ENSOCUG00000027627	SLC26A7 (ENSOCUG00000012527)	LRRC69 (ENSOCUG00000028994)	OTUD6B (ENSOCUG00000000218)	ENSOCUG00000000723	ENSOCUG00000030280	ENSOCUG00000023574	NECAB1 (ENSOCUG00000001277)	ENSOCUG00000006890	ENSOCUG00000021479	ENSOCUG00000006341	ENSOCUG00000006333	NBN (ENSOCUG00000009935)	OSGIN2 (ENSOCUG00000009931)
Tree shrew	MODERN SPECIES	3023																G3BP1 (ENSTBEG00000004386) #22	GLRA1 (ENSTBEG00000004976) #23
Primates	ANCESTRAL SPECIES	8	ENSGT00950000183007.a.b.g.b #36	ENSGT00940000162678	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00910000147868	ENSGT00940000162517 #21	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Haplorrhini	ANCESTRAL SPECIES	4	ENSGT00860000135878	ENSGT00950000183007.a.b.g.b #36	ENSGT00940000162678	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00910000147868	ENSGT00940000162517 #21	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	2168														SPARC (ENSTSYG00000032004) #20	ENSTSYG00000006968 #21	G3BP1 (ENSTSYG00000004570) #22	GLRA1 (ENSTSYG00000004584) #23
Tarsier	MODERN SPECIES	3140																ENSTSYG00000030090 #22
Simiiformes	ANCESTRAL SPECIES	6	ENSGT00860000135878	ENSGT00950000183007.a.b.g.b #36	ENSGT00940000162678	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00910000147868	ENSGT00940000162517 #21	ENSGT00390000011365.a #22	ENSGT00390000010047.a.b.a.b	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34
Catarrhini	ANCESTRAL SPECIES	16	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000008527.k.a.d	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00390000011365.a #22	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00910000147620	ENSGT00390000001170	ENSGT00910000147097	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949
Hominoidea	ANCESTRAL SPECIES	15	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT00940000163355	ENSGT00940000153434.a.b.a.b.l	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00390000011365.a #22	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00910000147097	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949	ENSGT00940000155065	ENSGT00940000154657.D
Gibbon	DUPLICATION
Gibbon	MODERN SPECIES	12	ENSNLEG00000028194	NXPH2 (ENSNLEG00000008920)	ENSNLEG00000030338	ENSNLEG00000033628	HNMT (ENSNLEG00000008899)	THSD7B (ENSNLEG00000008876)	ENSNLEG00000028168	ENSNLEG00000031448	CXCR4 (ENSNLEG00000008873)	DARS1 (ENSNLEG00000032858)	MCM6 (ENSNLEG00000008748)	LCT (ENSNLEG00000008718)	UBXN4 (ENSNLEG00000008675)	R3HDM1 (ENSNLEG00000008622)	ZRANB3 (ENSNLEG00000008561)	ENSNLEG00000030245 #22	RAB3GAP1 (ENSNLEG00000008500)	MAP3K19 (ENSNLEG00000008465)	CCNT2 (ENSNLEG00000008432)	ACMSD (ENSNLEG00000008409)	TMEM163 (ENSNLEG00000008393)	ENSNLEG00000032873	MGAT5 (ENSNLEG00000008354)	NCKAP5 (ENSNLEG00000008327)	LYPD1 (ENSNLEG00000008321)	GPR39 (ENSNLEG00000008318)	SLC35F5 (ENSNLEG00000011590)	ACTR3 (ENSNLEG00000011619)	DPP10 (ENSNLEG00000011663)	DDX18 (ENSNLEG00000011769)	ENSNLEG00000031890
Gibbon	MODERN SPECIES	11	ENSNLEG00000036335	SMIM3 (ENSNLEG00000018481)	ENSNLEG00000032698	ZNF300 (ENSNLEG00000010439)	GPX3 (ENSNLEG00000031591) #11	TNIP1 (ENSNLEG00000010529) #12	ANXA6 (ENSNLEG00000010757) #13	CCDC69 (ENSNLEG00000033034) #14	GM2A (ENSNLEG00000034956) #15	SLC36A3 (ENSNLEG00000010981) #16	SLC36A2 (ENSNLEG00000011003) #17	FAT2 (ENSNLEG00000011039) #19	SPARC (ENSNLEG00000016420) #20	ATOX1 (ENSNLEG00000016467) #21	ENSNLEG00000036070	G3BP1 (ENSNLEG00000027246) #22	ENSNLEG00000027671	GLRA1 (ENSNLEG00000016483) #23	NMUR2 (ENSNLEG00000016499) #24	GRIA1 (ENSNLEG00000016504) #25	FAM114A2 (ENSNLEG00000016540) #26	MFAP3 (ENSNLEG00000035100) #27	GALNT10 (ENSNLEG00000016565) #28	SAP30L (ENSNLEG00000016582) #29	HAND1 (ENSNLEG00000016584) #30	ENSNLEG00000031190	LARP1 (ENSNLEG00000016588) #31	FAXDC2 (ENSNLEG00000016609)	CNOT8 (ENSNLEG00000016626) #32	GEMIN5 (ENSNLEG00000016630) #33	MRPL22 (ENSNLEG00000029916) #34
Hominidae	ANCESTRAL SPECIES	7	ENSGT00940000162678	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00910000147868	ENSGT00940000162517 #21	ENSGT00940000163712	ENSGT00910000148764	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000164190	ENSGT00940000158509
Orangutan	MODERN SPECIES	18	DCTN4 (ENSPPYG00000036615)	ZNF300 (ENSPPYG00000015957)	ENSPPYG00000030333	GPX3 (ENSPPYG00000015958) #11	ENSPPYG00000015959 #12	ANXA6 (ENSPPYG00000015960) #13	CCDC69 (ENSPPYG00000015961) #14	GM2A (ENSPPYG00000015962) #15	SLC36A3 (ENSPPYG00000015963) #16	SLC36A2 (ENSPPYG00000015964) #17	SLC36A1 (ENSPPYG00000015965) #18	FAT2 (ENSPPYG00000015966) #19	SPARC (ENSPPYG00000030691) #20	ENSPPYG00000034727 #21	ENSPPYG00000030979	G3BP1 (ENSPPYG00000015968) #22	GLRA1 (ENSPPYG00000015969) #23	NMUR2 (ENSPPYG00000031597) #24	GRIA1 (ENSPPYG00000015970) #25	FAM114A2 (ENSPPYG00000015971) #26	MFAP3 (ENSPPYG00000015972) #27	GALNT10 (ENSPPYG00000015973) #28	SAP30L (ENSPPYG00000015974) #29	HAND1 (ENSPPYG00000015975) #30	LARP1 (ENSPPYG00000036339) #31	FAXDC2 (ENSPPYG00000015976)	CNOT8 (ENSPPYG00000015977) #32	GEMIN5 (ENSPPYG00000015978) #33	MRPL22 (ENSPPYG00000015979) #34	KIF4B (ENSPPYG00000015980)	SGCD (ENSPPYG00000015981)
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	7	ENSGT00940000162678	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00910000147868	ENSGT00940000162517 #21	ENSGT00940000163712	ENSGT00910000148764	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000164190	ENSGT00940000158509
Homo/Pan group	ANCESTRAL SPECIES	8	ENSGT00940000162678	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00910000147868	ENSGT00940000162517 #21	ENSGT00940000163712	ENSGT00910000148764	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000164190	ENSGT00940000158509
Human	MODERN SPECIES	17	DCTN4 (ENSG00000132912)	SMIM3 (ENSG00000256235)	IRGM (ENSG00000237693) #36	ZNF300 (ENSG00000145908)	GPX3 (ENSG00000211445) #11	TNIP1 (ENSG00000145901) #12	ANXA6 (ENSG00000197043) #13	CCDC69 (ENSG00000198624) #14	GM2A (ENSG00000196743) #15	SLC36A3 (ENSG00000186334) #16	SLC36A2 (ENSG00000186335) #17	SLC36A1 (ENSG00000123643) #18	FAT2 (ENSG00000086570) #19	SPARC (ENSG00000113140) #20	ATOX1 (ENSG00000177556) #21	G3BP1 (ENSG00000145907) #22	GLRA1 (ENSG00000145888) #23	NMUR2 (ENSG00000132911) #24	GRIA1 (ENSG00000155511) #25	FAM114A2 (ENSG00000055147) #26	MFAP3 (ENSG00000037749) #27	GALNT10 (ENSG00000164574) #28	SAP30L (ENSG00000164576) #29	HAND1 (ENSG00000113196) #30	LARP1 (ENSG00000155506) #31	FAXDC2 (ENSG00000170271)	CNOT8 (ENSG00000155508) #32	GEMIN5 (ENSG00000082516) #33	MRPL22 (ENSG00000082515) #34	KIF4B (ENSG00000226650)	SGCD (ENSG00000170624)
Pan	ANCESTRAL SPECIES	10	ENSGT00950000183007.a.b.g.b #36	ENSGT00940000162678	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00910000147868	ENSGT00940000162517 #21	ENSGT00940000163712	ENSGT00910000148764	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509	ENSGT00390000004757.`b.b.b.d
Chimpanzee	DUPLICATION
Chimpanzee	MODERN SPECIES	15	LRP1B (ENSPTRG00000012508)	ENSPTRG00000042896	ENSPTRG00000052120	NXPH2 (ENSPTRG00000012505)	SPOPL (ENSPTRG00000012504)	ENSPTRG00000042850	HNMT (ENSPTRG00000012503)	THSD7B (ENSPTRG00000012502)	ENSPTRG00000042775	CXCR4 (ENSPTRG00000012501)	DARS1 (ENSPTRG00000012500)	MCM6 (ENSPTRG00000012498)	LCT (ENSPTRG00000012497)	UBXN4 (ENSPTRG00000012496)	R3HDM1 (ENSPTRG00000012494)	ENSPTRG00000046031 #22	ZRANB3 (ENSPTRG00000012492)	RAB3GAP1 (ENSPTRG00000012491)	MAP3K19 (ENSPTRG00000012490)	CCNT2 (ENSPTRG00000024043)	ACMSD (ENSPTRG00000012488)	TMEM163 (ENSPTRG00000012486)	ENSPTRG00000052878	ENSPTRG00000052860	MGAT5 (ENSPTRG00000012485)	NCKAP5 (ENSPTRG00000050546)	LYPD1 (ENSPTRG00000012479)	GPR39 (ENSPTRG00000012477)	ENSPTRG00000051062	ENSPTRG00000045125	ENSPTRG00000050178
Chimpanzee	MODERN SPECIES	18	IRGM (ENSPTRG00000040838) #36	ZNF300 (ENSPTRG00000017426)	GPX3 (ENSPTRG00000017427) #11	TNIP1 (ENSPTRG00000017428) #12	ANXA6 (ENSPTRG00000047021) #13	GM2A (ENSPTRG00000017431) #15	SLC36A3 (ENSPTRG00000017432) #16	SLC36A2 (ENSPTRG00000017433) #17	SLC36A1 (ENSPTRG00000017434) #18	FAT2 (ENSPTRG00000017435) #19	SPARC (ENSPTRG00000017436) #20	ENSPTRG00000043099	ATOX1 (ENSPTRG00000017437) #21	ENSPTRG00000046428	ENSPTRG00000043195	G3BP1 (ENSPTRG00000017438) #22	GLRA1 (ENSPTRG00000017439) #23	NMUR2 (ENSPTRG00000017440) #24	GRIA1 (ENSPTRG00000017441) #25	FAM114A2 (ENSPTRG00000017442) #26	MFAP3 (ENSPTRG00000017443) #27	GALNT10 (ENSPTRG00000017444) #28	SAP30L (ENSPTRG00000017445) #29	HAND1 (ENSPTRG00000017446) #30	ENSPTRG00000045130	LARP1 (ENSPTRG00000017447) #31	FAXDC2 (ENSPTRG00000017450)	CNOT8 (ENSPTRG00000017451) #32	GEMIN5 (ENSPTRG00000017452) #33	MRPL22 (ENSPTRG00000051589) #34	ENSPTRG00000047772
Bonobo	DUPLICATION
Bonobo	MODERN SPECIES	15	ENSPPAG00000041987	ENSPPAG00000040658	NXPH2 (ENSPPAG00000039555)	SPOPL (ENSPPAG00000001924)	ENSPPAG00000038546	HNMT (ENSPPAG00000030141)	THSD7B (ENSPPAG00000036421)	ENSPPAG00000009775	ENSPPAG00000032080	CXCR4 (ENSPPAG00000041523)	DARS1 (ENSPPAG00000039644)	MCM6 (ENSPPAG00000014507)	LCT (ENSPPAG00000005000)	UBXN4 (ENSPPAG00000041972)	R3HDM1 (ENSPPAG00000027858)	ENSPPAG00000039991 #22	ZRANB3 (ENSPPAG00000029480)	RAB3GAP1 (ENSPPAG00000028809)	MAP3K19 (ENSPPAG00000040650)	CCNT2 (ENSPPAG00000037070)	ACMSD (ENSPPAG00000039483)	ENSPPAG00000036605	MGAT5 (ENSPPAG00000032538)	NCKAP5 (ENSPPAG00000037197)	LYPD1 (ENSPPAG00000029105)	GPR39 (ENSPPAG00000039943)	ENSPPAG00000039115	ENSPPAG00000032321	PLEKHB2 (ENSPPAG00000040925)	FAM168B (ENSPPAG00000000880)	ARHGEF4 (ENSPPAG00000031089)
Bonobo	MODERN SPECIES	18	SMIM3 (ENSPPAG00000019792)	ENSPPAG00000013008	IRGM (ENSPPAG00000030526) #36	ZNF300 (ENSPPAG00000031459)	ENSPPAG00000032371 #11	TNIP1 (ENSPPAG00000025830) #12	ANXA6 (ENSPPAG00000031897) #13	GM2A (ENSPPAG00000037388) #15	SLC36A3 (ENSPPAG00000038247) #16	SLC36A2 (ENSPPAG00000030952) #17	SLC36A1 (ENSPPAG00000035415) #18	FAT2 (ENSPPAG00000035661) #19	SPARC (ENSPPAG00000040370) #20	ATOX1 (ENSPPAG00000042315) #21	ENSPPAG00000034828	G3BP1 (ENSPPAG00000027573) #22	GLRA1 (ENSPPAG00000042329) #23	NMUR2 (ENSPPAG00000026509) #24	GRIA1 (ENSPPAG00000028550) #25	FAM114A2 (ENSPPAG00000026356) #26	MFAP3 (ENSPPAG00000043694) #27	GALNT10 (ENSPPAG00000017325) #28	SAP30L (ENSPPAG00000037666) #29	HAND1 (ENSPPAG00000032868) #30	ENSPPAG00000034808	LARP1 (ENSPPAG00000042993) #31	FAXDC2 (ENSPPAG00000039494)	CNOT8 (ENSPPAG00000043672) #32	ENSPPAG00000033864	GEMIN5 (ENSPPAG00000043133) #33	MRPL22 (ENSPPAG00000027082) #34
Gorilla	DUPLICATION
Gorilla	MODERN SPECIES	15	KYNU (ENSGGOG00000007406)	LRP1B (ENSGGOG00000040868)	ENSGGOG00000026916	NXPH2 (ENSGGOG00000008363)	SPOPL (ENSGGOG00000016285)	HNMT (ENSGGOG00000011567)	THSD7B (ENSGGOG00000009703)	ENSGGOG00000040151	ENSGGOG00000037201	CXCR4 (ENSGGOG00000016862)	DARS1 (ENSGGOG00000007482)	MCM6 (ENSGGOG00000010911)	LCT (ENSGGOG00000002058)	UBXN4 (ENSGGOG00000027757)	R3HDM1 (ENSGGOG00000008156)	ENSGGOG00000023113 #22	ZRANB3 (ENSGGOG00000003782)	RAB3GAP1 (ENSGGOG00000015070)	MAP3K19 (ENSGGOG00000014556)	CCNT2 (ENSGGOG00000040615)	ACMSD (ENSGGOG00000009672)	TMEM163 (ENSGGOG00000011041)	ENSGGOG00000041040	MGAT5 (ENSGGOG00000003032)	NCKAP5 (ENSGGOG00000014638)	LYPD1 (ENSGGOG00000014632)	GPR39 (ENSGGOG00000014629)	ENSGGOG00000037449	ENSGGOG00000036491	ENSGGOG00000042657	ENSGGOG00000028572
Gorilla	MODERN SPECIES	18	IRGM (ENSGGOG00000022924) #36	ZNF300 (ENSGGOG00000008304)	GPX3 (ENSGGOG00000000889) #11	TNIP1 (ENSGGOG00000000891) #12	ANXA6 (ENSGGOG00000005109) #13	CCDC69 (ENSGGOG00000006494) #14	GM2A (ENSGGOG00000015302) #15	SLC36A3 (ENSGGOG00000004915) #16	SLC36A2 (ENSGGOG00000038419) #17	SLC36A1 (ENSGGOG00000006356) #18	FAT2 (ENSGGOG00000006362) #19	SPARC (ENSGGOG00000016149) #20	ATOX1 (ENSGGOG00000008760) #21	ENSGGOG00000026958	ENSGGOG00000038918	G3BP1 (ENSGGOG00000022952) #22	GLRA1 (ENSGGOG00000014389) #23	NMUR2 (ENSGGOG00000006717) #24	GRIA1 (ENSGGOG00000014845) #25	ENSGGOG00000007198 #26	MFAP3 (ENSGGOG00000011060) #27	GALNT10 (ENSGGOG00000014438) #28	SAP30L (ENSGGOG00000004441) #29	HAND1 (ENSGGOG00000004311) #30	ENSGGOG00000043297	LARP1 (ENSGGOG00000006048) #31	FAXDC2 (ENSGGOG00000006063)	CNOT8 (ENSGGOG00000010459) #32	GEMIN5 (ENSGGOG00000010687) #33	MRPL22 (ENSGGOG00000042383) #34	ENSGGOG00000037690
Cercopithecidae	ANCESTRAL SPECIES	13	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00940000159262	ENSGT00940000163355	ENSGT00940000153434.a.b.b	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000162517.l #21	ENSGT00390000011365.a #22	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00910000147620	ENSGT00910000147097	ENSGT00940000153470.a.a.a.a	ENSGT00390000011864.o.b	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949
Rhinopithecus	ANCESTRAL SPECIES	53	ENSGT00390000009443	ENSGT00860000135878	ENSGT00950000183007.a.b.g.b #36	ENSGT00940000162678	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000162517.l #21	ENSGT00390000011365.a #22	ENSGT00390000010047.a.b.a.b	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00730000111135.h	ENSGT00940000159577 #31	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34
Golden snub-nosed monkey	DUPLICATION
Golden snub-nosed monkey	MODERN SPECIES	643										DARS1 (ENSRROG00000037355)	MCM6 (ENSRROG00000038657)	LCT (ENSRROG00000036958)	UBXN4 (ENSRROG00000031101)	R3HDM1 (ENSRROG00000034534)	ZRANB3 (ENSRROG00000038728)	ENSRROG00000045035 #22	ENSRROG00000032247	RAB3GAP1 (ENSRROG00000033477)	MAP3K19 (ENSRROG00000042370)	CCNT2 (ENSRROG00000038634)	ACMSD (ENSRROG00000032370)	MAP1LC3B2 (ENSRROG00000007151)
Golden snub-nosed monkey	MODERN SPECIES	3296													FAT2 (ENSRROG00000036572) #19	SPARC (ENSRROG00000033362) #20	ENSRROG00000035368 #21	G3BP1 (ENSRROG00000030118) #22	ENSRROG00000043687	GLRA1 (ENSRROG00000015315) #23	NMUR2 (ENSRROG00000030463) #24
Black snub-nosed monkey	DUPLICATION
Black snub-nosed monkey	MODERN SPECIES	911								ENSRBIG00000029012	ENSRBIG00000033695	CXCR4 (ENSRBIG00000029356)	DARS1 (ENSRBIG00000001796)	MCM6 (ENSRBIG00000038495)	LCT (ENSRBIG00000039229)	UBXN4 (ENSRBIG00000004771)	R3HDM1 (ENSRBIG00000033317)	ENSRBIG00000028792 #22	ZRANB3 (ENSRBIG00000039852)	RAB3GAP1 (ENSRBIG00000043681)	MAP3K19 (ENSRBIG00000035927)	CCNT2 (ENSRBIG00000033581)	ACMSD (ENSRBIG00000032023)	TMEM163 (ENSRBIG00000040158)	ENSRBIG00000015170	ENSRBIG00000041688	MGAT5 (ENSRBIG00000044917)	ENSRBIG00000040148	RNASEH2A (ENSRBIG00000023554)	THSD8 (ENSRBIG00000000299)	PRDX2 (ENSRBIG00000040222)	HOOK2 (ENSRBIG00000036323)	BEST2 (ENSRBIG00000038659)
Black snub-nosed monkey	MODERN SPECIES	531	SMIM3 (ENSRBIG00000016271)	ENSRBIG00000012227	IRGM (ENSRBIG00000042496) #36	ZNF300 (ENSRBIG00000044234)	GPX3 (ENSRBIG00000044997) #11	TNIP1 (ENSRBIG00000027176) #12	ANXA6 (ENSRBIG00000041548) #13	CCDC69 (ENSRBIG00000026946) #14	GM2A (ENSRBIG00000044207) #15	SLC36A3 (ENSRBIG00000030720) #16	SLC36A2 (ENSRBIG00000044519) #17	SLC36A1 (ENSRBIG00000039053) #18	FAT2 (ENSRBIG00000038121) #19	SPARC (ENSRBIG00000043589) #20	ATOX1 (ENSRBIG00000033555) #21	G3BP1 (ENSRBIG00000042268) #22	ENSRBIG00000033185	GLRA1 (ENSRBIG00000032053) #23	NMUR2 (ENSRBIG00000035659) #24	GRIA1 (ENSRBIG00000040984) #25	FAM114A2 (ENSRBIG00000040474) #26	MFAP3 (ENSRBIG00000037406) #27	GALNT10 (ENSRBIG00000042569) #28	SAP30L (ENSRBIG00000040566) #29	HAND1 (ENSRBIG00000030949) #30	ENSRBIG00000039741	LARP1 (ENSRBIG00000038005) #31	FAXDC2 (ENSRBIG00000026691)	CNOT8 (ENSRBIG00000036678) #32	GEMIN5 (ENSRBIG00000040382) #33	MRPL22 (ENSRBIG00000028736) #34
Cercopithecinae	ANCESTRAL SPECIES	11	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.i.a	ENSGT00940000159262	ENSGT00940000163355	ENSGT00940000153434.a.b.b	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000162517.l #21	ENSGT00390000011365.a #22	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00910000147620	ENSGT00390000001170	ENSGT00910000147097	ENSGT00940000153470.a.a.a.a	ENSGT00390000011864.o.b	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949
Vervet Monkey	MODERN SPECIES	15	MYOZ3 (ENSCSAG00000011410)	ENSCSAG00000011379	ENSCSAG00000011322	SMIM3 (ENSCSAG00000019719)	ZNF300 (ENSCSAG00000011310)	TNIP1 (ENSCSAG00000011301) #12	ANXA6 (ENSCSAG00000011217) #13	CCDC69 (ENSCSAG00000010986) #14	GM2A (ENSCSAG00000010976) #15	SLC36A3 (ENSCSAG00000010946) #16	SLC36A2 (ENSCSAG00000010922) #17	SLC36A1 (ENSCSAG00000010911) #18	FAT2 (ENSCSAG00000010900) #19	SPARC (ENSCSAG00000010892) #20	ENSCSAG00000010885 #21	G3BP1 (ENSCSAG00000010876) #22	GLRA1 (ENSCSAG00000010864) #23	NMUR2 (ENSCSAG00000010855) #24	GRIA1 (ENSCSAG00000010848) #25	FAM114A2 (ENSCSAG00000010839) #26	MFAP3 (ENSCSAG00000010825) #27	GALNT10 (ENSCSAG00000010818) #28	SAP30L (ENSCSAG00000010808) #29	HAND1 (ENSCSAG00000010805) #30	LARP1 (ENSCSAG00000010800) #31	FAXDC2 (ENSCSAG00000010785)	CNOT8 (ENSCSAG00000010779) #32	GEMIN5 (ENSCSAG00000010767) #33	MRPL22 (ENSCSAG00000010752) #34	KIF4B (ENSCSAG00000019720)	SGCD (ENSCSAG00000010741)
Cercopithecinae_a	ANCESTRAL SPECIES	16	ENSGT00910000147617	ENSGT00390000015060.m.d	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.i.a	ENSGT00940000159262	ENSGT00940000163355	ENSGT00940000153434.a.b.b	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000162517.l #21	ENSGT00390000011365.a #22	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00910000147620	ENSGT00390000001170	ENSGT00910000147097	ENSGT00940000153470.a.a.a.a	ENSGT00390000011864.o.b	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949
Macaca	ANCESTRAL SPECIES	7	ENSGT00950000183007.a.b.g.b #36	ENSGT00940000162678	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000162517.k #21	ENSGT00910000148764	ENSGT00940000162517.l #21	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509	ENSGT00940000161609
Pig-tailed macaque	DUPLICATION
Pig-tailed macaque	MODERN SPECIES	192	ENSMNEG00000007981	NXPH2 (ENSMNEG00000042710)	SPOPL (ENSMNEG00000039162)	ENSMNEG00000037114	ENSMNEG00000043854	ENSMNEG00000043214	ENSMNEG00000045373	THSD7B (ENSMNEG00000030691)	ENSMNEG00000028907	CXCR4 (ENSMNEG00000032574)	DARS1 (ENSMNEG00000028601)	MCM6 (ENSMNEG00000030267)	LCT (ENSMNEG00000041995)	UBXN4 (ENSMNEG00000009382)	R3HDM1 (ENSMNEG00000027793)	ENSMNEG00000042994 #22	ZRANB3 (ENSMNEG00000015978)	RAB3GAP1 (ENSMNEG00000031864)	MAP3K19 (ENSMNEG00000033333)	CCNT2 (ENSMNEG00000042821)	ACMSD (ENSMNEG00000028900)	TMEM163 (ENSMNEG00000032280)	MGAT5 (ENSMNEG00000035554)	ENSMNEG00000042204	NCKAP5 (ENSMNEG00000040558)	LYPD1 (ENSMNEG00000016693)	GPR39 (ENSMNEG00000038370)	SLC35F5 (ENSMNEG00000028365)	ACTR3 (ENSMNEG00000012040)	ENSMNEG00000018068	DPP10 (ENSMNEG00000034709)
Pig-tailed macaque	MODERN SPECIES	383	SMIM3 (ENSMNEG00000009006)	ENSMNEG00000003762	IRGM (ENSMNEG00000035125) #36	ZNF300 (ENSMNEG00000037153)	GPX3 (ENSMNEG00000030683) #11	TNIP1 (ENSMNEG00000022961) #12	ANXA6 (ENSMNEG00000035257) #13	CCDC69 (ENSMNEG00000044666) #14	GM2A (ENSMNEG00000030396) #15	SLC36A3 (ENSMNEG00000029091) #16	SLC36A2 (ENSMNEG00000032236) #17	SLC36A1 (ENSMNEG00000029317) #18	FAT2 (ENSMNEG00000045400) #19	SPARC (ENSMNEG00000014038) #20	ATOX1 (ENSMNEG00000039738) #21	G3BP1 (ENSMNEG00000021253) #22	ENSMNEG00000003877	GLRA1 (ENSMNEG00000034655) #23	NMUR2 (ENSMNEG00000028673) #24
Macaca_a	ANCESTRAL SPECIES	8	ENSGT00390000002792	ENSGT00390000006954	ENSGT00940000162678	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000162517.k #21	ENSGT00910000148764	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT01100000263539.b.a.a.a.a.b.a.b.a.a.b	ENSGT00940000159577 #31	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT01100000263539.b.a.a.a.a.a.a.a.a.b.a.b.b
Crab-eating macaque	MODERN SPECIES	16	DCTN4 (ENSMFAG00000037111)	ZNF300 (ENSMFAG00000041051)	ENSMFAG00000061550 #11	TNIP1 (ENSMFAG00000030366) #12	ANXA6 (ENSMFAG00000037015) #13	CCDC69 (ENSMFAG00000029997) #14	GM2A (ENSMFAG00000032758) #15	ENSMFAG00000047173	SLC36A3 (ENSMFAG00000003733) #16	SLC36A2 (ENSMFAG00000046152) #17	SLC36A1 (ENSMFAG00000010715) #18	FAT2 (ENSMFAG00000039681) #19	SPARC (ENSMFAG00000038613) #20	ATOX1 (ENSMFAG00000050498) #21	ENSMFAG00000052929	G3BP1 (ENSMFAG00000036965) #22	GLRA1 (ENSMFAG00000033181) #23	ENSMFAG00000063206	NMUR2 (ENSMFAG00000043345) #24	GRIA1 (ENSMFAG00000043353) #25	FAM114A2 (ENSMFAG00000043590) #26	MFAP3 (ENSMFAG00000002609) #27	GALNT10 (ENSMFAG00000035971) #28	ENSMFAG00000059801 #29	HAND1 (ENSMFAG00000000456) #30	ENSMFAG00000064816	LARP1 (ENSMFAG00000031651) #31	ENSMFAG00000054032	FAXDC2 (ENSMFAG00000031322)	ENSMFAG00000062178	ENSMFAG00000027665
Rhesus	MODERN SPECIES	16	DCTN4 (ENSMMUG00000019764)	ENSMMUG00000057434	ZNF300 (ENSMMUG00000012696)	GPX3 (ENSMMUG00000042643) #11	TNIP1 (ENSMMUG00000021051) #12	ENSMMUG00000053139	ANXA6 (ENSMMUG00000021053) #13	CCDC69 (ENSMMUG00000050884) #14	GM2A (ENSMMUG00000022869) #15	SLC36A3 (ENSMMUG00000022870) #16	SLC36A2 (ENSMMUG00000005567) #17	SLC36A1 (ENSMMUG00000003499) #18	FAT2 (ENSMMUG00000003497) #19	SPARC (ENSMMUG00000053367) #20	ATOX1 (ENSMMUG00000054302) #21	G3BP1 (ENSMMUG00000014701) #22	GLRA1 (ENSMMUG00000014704) #23	ENSMMUG00000029761	ENSMMUG00000061338	NMUR2 (ENSMMUG00000013880) #24	GRIA1 (ENSMMUG00000009287) #25	FAM114A2 (ENSMMUG00000011988) #26	MFAP3 (ENSMMUG00000011989) #27	GALNT10 (ENSMMUG00000010615) #28	ENSMMUG00000063477	SAP30L (ENSMMUG00000056369) #29	HAND1 (ENSMMUG00000010621) #30	ENSMMUG00000057932	ENSMMUG00000045056	LARP1 (ENSMMUG00000009411) #31	ENSMMUG00000054082
Cercopithecinae_b	ANCESTRAL SPECIES	4	ENSGT00950000183007.a.b.g.b #36	ENSGT00940000162678	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b.c.b #20	ENSGT00940000162517.k.b #21	ENSGT00510000046787.e.b.c.a #20	ENSGT00940000162517.l #21	ENSGT00390000011365.a #22	ENSGT00390000010047.a.b.a.b	ENSGT00940000159047 #23	ENSGT00390000010047.b.o	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33
Olive baboon	MODERN SPECIES	15	DCTN4 (ENSPANG00000020110)	ENSPANG00000048468	SMIM3 (ENSPANG00000029980)	ZNF300 (ENSPANG00000026071)	TNIP1 (ENSPANG00000010161) #12	GPX3 (ENSPANG00000034534) #11	ANXA6 (ENSPANG00000013721) #13	CCDC69 (ENSPANG00000016192) #14	GM2A (ENSPANG00000003592) #15	SLC36A3 (ENSPANG00000016764) #16	SLC36A2 (ENSPANG00000023734) #17	SLC36A1 (ENSPANG00000009511) #18	FAT2 (ENSPANG00000003561) #19	ENSPANG00000008874 #20	ENSPANG00000003198 #21	G3BP1 (ENSPANG00000017662) #22	GLRA1 (ENSPANG00000007038) #23	ENSPANG00000029435	NMUR2 (ENSPANG00000002471) #24	GRIA1 (ENSPANG00000017117) #25	ENSPANG00000047451	FAM114A2 (ENSPANG00000006589) #26	MFAP3 (ENSPANG00000047235) #27	ENSPANG00000017611	GALNT10 (ENSPANG00000013928) #28	SAP30L (ENSPANG00000005222) #29	HAND1 (ENSPANG00000046299) #30	ENSPANG00000047695	ENSPANG00000050331	LARP1 (ENSPANG00000008080) #31	FAXDC2 (ENSPANG00000002470)
Cercopithecinae_d	ANCESTRAL SPECIES	90	ENSGT00390000009443	ENSGT00860000135878	ENSGT00950000183007.a.b.g.b #36	ENSGT00940000162678	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b.c.a #20	ENSGT00940000162517.l #21	ENSGT00390000011365.a #22	ENSGT00390000010047.a.b.a.b	ENSGT00940000159047 #23	ENSGT00390000010047.b.o	ENSGT01100000263484.A.d #24	ENSGT00910000147387	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32
Drill	DUPLICATION
Drill	MODERN SPECIES	1680								ENSMLEG00000032696	ENSMLEG00000039428	CXCR4 (ENSMLEG00000015246)	DARS1 (ENSMLEG00000010853)	MCM6 (ENSMLEG00000043369)	LCT (ENSMLEG00000031664)	UBXN4 (ENSMLEG00000041150)	R3HDM1 (ENSMLEG00000043189)	ENSMLEG00000032050 #22	ZRANB3 (ENSMLEG00000028200)	RAB3GAP1 (ENSMLEG00000043679)	MAP3K19 (ENSMLEG00000032802)	CCNT2 (ENSMLEG00000044356)	ACMSD (ENSMLEG00000032474)	TMEM163 (ENSMLEG00000044365)	ENSMLEG00000043027	MGAT5 (ENSMLEG00000031822)	ENSMLEG00000039102	NCKAP5 (ENSMLEG00000028051)	LYPD1 (ENSMLEG00000035076)	ENSMLEG00000039556	GPR39 (ENSMLEG00000031443)	SLC35F5 (ENSMLEG00000042464)	ACTR3 (ENSMLEG00000032560)
Drill	MODERN SPECIES	921	SMIM3 (ENSMLEG00000003176)	ENSMLEG00000043390	IRGM (ENSMLEG00000016871) #36	ZNF300 (ENSMLEG00000041975)	GPX3 (ENSMLEG00000006710) #11	TNIP1 (ENSMLEG00000026506) #12	ANXA6 (ENSMLEG00000035615) #13	CCDC69 (ENSMLEG00000032570) #14	GM2A (ENSMLEG00000017264) #15	SLC36A3 (ENSMLEG00000036664) #16	SLC36A2 (ENSMLEG00000004879) #17	SLC36A1 (ENSMLEG00000040481) #18	FAT2 (ENSMLEG00000032800) #19	SPARC (ENSMLEG00000029267) #20	ENSMLEG00000029418 #21	G3BP1 (ENSMLEG00000032036) #22	ENSMLEG00000042346	GLRA1 (ENSMLEG00000038021) #23
Sooty mangabey	DUPLICATION
Sooty mangabey	MODERN SPECIES	156						ENSCATG00000021593	ENSCATG00000012682	ENSCATG00000011087	ENSCATG00000041113	CXCR4 (ENSCATG00000010566)	DARS1 (ENSCATG00000038494)	MCM6 (ENSCATG00000029528)	LCT (ENSCATG00000032713)	UBXN4 (ENSCATG00000008333)	R3HDM1 (ENSCATG00000023642)	ENSCATG00000039913 #22	ENSCATG00000029602	ZRANB3 (ENSCATG00000041950)	RAB3GAP1 (ENSCATG00000035248)	MAP3K19 (ENSCATG00000036468)	CCNT2 (ENSCATG00000026405)	ACMSD (ENSCATG00000034488)	ENSCATG00000024289	TMEM163 (ENSCATG00000038921)	ENSCATG00000037791	MGAT5 (ENSCATG00000033052)	ENSCATG00000038961	NCKAP5 (ENSCATG00000038828)	LYPD1 (ENSCATG00000035955)	GPR39 (ENSCATG00000041836)	SLC35F5 (ENSCATG00000033787)
Sooty mangabey	MODERN SPECIES	150	SMIM3 (ENSCATG00000017533)	ENSCATG00000041536	IRGM (ENSCATG00000041689) #36	ZNF300 (ENSCATG00000006978)	GPX3 (ENSCATG00000013573) #11	TNIP1 (ENSCATG00000042774) #12	ANXA6 (ENSCATG00000042117) #13	CCDC69 (ENSCATG00000040897) #14	GM2A (ENSCATG00000041023) #15	SLC36A3 (ENSCATG00000034422) #16	SLC36A2 (ENSCATG00000025179) #17	SLC36A1 (ENSCATG00000034672) #18	FAT2 (ENSCATG00000044962) #19	SPARC (ENSCATG00000031975) #20	ENSCATG00000041465	G3BP1 (ENSCATG00000018373) #22	GLRA1 (ENSCATG00000037389) #23	ENSCATG00000034503	NMUR2 (ENSCATG00000010286) #24	ENSCATG00000036023	GRIA1 (ENSCATG00000038910) #25	FAM114A2 (ENSCATG00000034701) #26	MFAP3 (ENSCATG00000045176) #27	GALNT10 (ENSCATG00000021578) #28	SAP30L (ENSCATG00000037026) #29	HAND1 (ENSCATG00000033921) #30	LARP1 (ENSCATG00000030675) #31	ENSCATG00000021010	FAXDC2 (ENSCATG00000027891)	CNOT8 (ENSCATG00000038091) #32	GEMIN5 (ENSCATG00000038574) #33
Platyrrhini	ANCESTRAL SPECIES	7	ENSGT00860000135878	ENSGT00950000183007.a.b.g.b #36	ENSGT00940000162678	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00910000147868	ENSGT00940000162517.j #21	ENSGT00390000011365.a #22	ENSGT00390000010047.a.b.a.b	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	966	ENSANAG00000028510	ZNF300 (ENSANAG00000029643)	GPX3 (ENSANAG00000033799) #11	TNIP1 (ENSANAG00000037058) #12	ANXA6 (ENSANAG00000033032) #13	CCDC69 (ENSANAG00000033186) #14	GM2A (ENSANAG00000034354) #15	SLC36A3 (ENSANAG00000032963) #16	SLC36A2 (ENSANAG00000021675) #17	SLC36A1 (ENSANAG00000032041) #18	FAT2 (ENSANAG00000036708) #19	ENSANAG00000012093	SPARC (ENSANAG00000021448) #20	ENSANAG00000035619	ATOX1 (ENSANAG00000035371) #21	ENSANAG00000022416 #22	ENSANAG00000036739	GLRA1 (ENSANAG00000023410) #23	NMUR2 (ENSANAG00000034858) #24	ENSANAG00000009431	ENSANAG00000011813	GRIA1 (ENSANAG00000029178) #25	FAM114A2 (ENSANAG00000027510) #26	MFAP3 (ENSANAG00000036628) #27	GALNT10 (ENSANAG00000033725) #28	SAP30L (ENSANAG00000032719) #29	HAND1 (ENSANAG00000031480) #30	ENSANAG00000031793	ENSANAG00000026082	ENSANAG00000027998	LARP1 (ENSANAG00000029949) #31
Mas night monkey	MODERN SPECIES	326														PMP22 (ENSANAG00000020946)	ENSANAG00000001461	ENSANAG00000035880 #22	ENSANAG00000027382	HS3ST3B1 (ENSANAG00000021778)	COX10 (ENSANAG00000028998)	HS3ST3A1 (ENSANAG00000026271)	ENSANAG00000035552	ELAC2 (ENSANAG00000036642)	ARHGAP44 (ENSANAG00000028017)	MYOCD (ENSANAG00000037357)	MAP2K4 (ENSANAG00000036533)	ZNF18 (ENSANAG00000025684)	ENSANAG00000020005	DNAH9 (ENSANAG00000033880)	ENSANAG00000020724	ENSANAG00000037536	TMEM220 (ENSANAG00000036133)
Cebidae	ANCESTRAL SPECIES	6	ENSGT00390000006954	ENSGT00390000009443	ENSGT00940000162678	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00910000147868	ENSGT00940000162517.j #21	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Marmoset	DUPLICATION
Marmoset	MODERN SPECIES	11	ENSCJAG00000078025	GPX3 (ENSCJAG00000020924) #11	TNIP1 (ENSCJAG00000020905) #12	ANXA6 (ENSCJAG00000020887) #13	ENSCJAG00000070086	CCDC69 (ENSCJAG00000015512) #14	GM2A (ENSCJAG00000073480) #15	SLC36A3 (ENSCJAG00000015538) #16	SLC36A2 (ENSCJAG00000015624) #17	ENSCJAG00000076411	ENSCJAG00000048432	SLC36A1 (ENSCJAG00000015590) #18	FAT2 (ENSCJAG00000015562) #19	SPARC (ENSCJAG00000042722) #20	ATOX1 (ENSCJAG00000015505) #21	G3BP1 (ENSCJAG00000015407) #22	GLRA1 (ENSCJAG00000015379) #23	NMUR2 (ENSCJAG00000086451) #24	ENSCJAG00000077707	GRIA1 (ENSCJAG00000004624) #25	ENSCJAG00000039293	ENSCJAG00000044423	FAM114A2 (ENSCJAG00000004547) #26	MFAP3 (ENSCJAG00000056328) #27	ENSCJAG00000041761	GALNT10 (ENSCJAG00000004500) #28	SAP30L (ENSCJAG00000042193) #29	HAND1 (ENSCJAG00000078853) #30	CNOT8 (ENSCJAG00000007417) #32	ENSCJAG00000074999	LARP1 (ENSCJAG00000004454) #31
Marmoset	MODERN SPECIES	78	SMARCA1 (ENSCJAG00000002868)	ENSCJAG00000074249	ENSCJAG00000086881	ENSCJAG00000085274	ENSCJAG00000087225	PRR32 (ENSCJAG00000002938)	TEX13C (ENSCJAG00000040019)	TENM1 (ENSCJAG00000020589)	SH2D1A (ENSCJAG00000077252)	STAG2 (ENSCJAG00000020559)	XIAP (ENSCJAG00000020553)	ENSCJAG00000016157	GRIA3 (ENSCJAG00000016110)	ENSCJAG00000054890	ENSCJAG00000086896	ENSCJAG00000075024 #22	ENSCJAG00000056596	ENSCJAG00000078239	C1GALT1C1 (ENSCJAG00000002590)	MCTS1 (ENSCJAG00000002593)	CUL4B (ENSCJAG00000002596)	LAMP2 (ENSCJAG00000002638)	ATP1B4 (ENSCJAG00000014233)	TMEM255A (ENSCJAG00000085725)	ZBTB33 (ENSCJAG00000076101)	ENSCJAG00000083966	ENSCJAG00000004920	NKAP (ENSCJAG00000004941)	AKAP14 (ENSCJAG00000004955)	ENSCJAG00000077125	UPF3B (ENSCJAG00000004975)
Cebidae_a	ANCESTRAL SPECIES	135																ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00730000111241	ENSGT00390000000341	ENSGT00460000041594.e.a.a	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00910000147868	ENSGT00940000162517.j #21
Capuchin	MODERN SPECIES	126								ENSCCAG00000024070	ENSCCAG00000026554	ENSCCAG00000034732	SLC36A1 (ENSCCAG00000025920) #18	FAT2 (ENSCCAG00000032964) #19	SPARC (ENSCCAG00000032787) #20	ENSCCAG00000024371	ATOX1 (ENSCCAG00000028503) #21	G3BP1 (ENSCCAG00000028702) #22	GLRA1 (ENSCCAG00000036960) #23	NMUR2 (ENSCCAG00000033342) #24	GRIA1 (ENSCCAG00000037364) #25	MRM2 (ENSCCAG00000032721)	ENSCCAG00000020483	ENSCCAG00000034458	ENSCCAG00000016701	ENSCCAG00000025695	ENSCCAG00000023837	FAM114A2 (ENSCCAG00000007197) #26	MFAP3 (ENSCCAG00000032732) #27	GALNT10 (ENSCCAG00000032842) #28	SAP30L (ENSCCAG00000006073) #29	HAND1 (ENSCCAG00000036939) #30	ENSCCAG00000023634
Bolivian squirrel monkey	MODERN SPECIES	103	TNIP1 (ENSSBOG00000034852) #12	ANXA6 (ENSSBOG00000026080) #13	CCDC69 (ENSSBOG00000021927) #14	ENSSBOG00000025174	GM2A (ENSSBOG00000013460) #15	SLC36A3 (ENSSBOG00000017155) #16	SLC36A2 (ENSSBOG00000036047) #17	ENSSBOG00000020482	NUDT1 (ENSSBOG00000033662)	ENSSBOG00000028038	SLC36A1 (ENSSBOG00000025643) #18	FAT2 (ENSSBOG00000022466) #19	SPARC (ENSSBOG00000030157) #20	ENSSBOG00000026315	ATOX1 (ENSSBOG00000017626) #21	G3BP1 (ENSSBOG00000029969) #22	GLRA1 (ENSSBOG00000030214) #23	NMUR2 (ENSSBOG00000030249) #24	GRIA1 (ENSSBOG00000035431) #25	ENSSBOG00000023653	ENSSBOG00000035630	FAM114A2 (ENSSBOG00000035995) #26	MFAP3 (ENSSBOG00000022464) #27	GALNT10 (ENSSBOG00000033607) #28	SAP30L (ENSSBOG00000019963) #29	HAND1 (ENSSBOG00000024034) #30	ENSSBOG00000025459	LARP1 (ENSSBOG00000019816) #31	FAXDC2 (ENSSBOG00000035971)	CNOT8 (ENSSBOG00000026293) #32	GEMIN5 (ENSSBOG00000020897) #33
Strepsirrhini	ANCESTRAL SPECIES	5	ENSGT00950000183007.a.b.g.b #36	ENSGT00940000162678	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00910000147868	ENSGT00940000162517 #21	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Lemuriformes	ANCESTRAL SPECIES	21	ENSGT00860000135878	ENSGT00950000183007.a.b.g.b #36	ENSGT00940000162678	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00910000147868	ENSGT00940000162517 #21	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Lemuriformes_a	ANCESTRAL SPECIES	13	ENSGT00860000135878	ENSGT00950000183007.a.b.g.b #36	ENSGT00940000162678	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00910000147868	ENSGT00940000162517 #21	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24
Greater bamboo lemur	MODERN SPECIES	50	ZNF300 (ENSPSMG00000023364)	ENSPSMG00000023356	GPX3 (ENSPSMG00000023344) #11	TNIP1 (ENSPSMG00000023321) #12	ANXA6 (ENSPSMG00000023176) #13	CCDC69 (ENSPSMG00000022895) #14	ENSPSMG00000022864 #15	SLC36A3 (ENSPSMG00000022857) #16	SLC36A2 (ENSPSMG00000022841) #17	ENSPSMG00000022834 #17	SLC36A1 (ENSPSMG00000022802) #18	FAT2 (ENSPSMG00000022740) #19	SPARC (ENSPSMG00000022710) #20	ENSPSMG00000022692	ATOX1 (ENSPSMG00000022687) #21	G3BP1 (ENSPSMG00000022660) #22
Mouse lemur	DUPLICATION
Mouse lemur	DUPLICATION
Mouse lemur	MODERN SPECIES	1	RCL1 (ENSMICG00000015562)	JAK2 (ENSMICG00000003885)	INSL6 (ENSMICG00000044551)	ENSMICG00000043730	PLGRKT (ENSMICG00000031798)	CD274 (ENSMICG00000035171)	PDCD1LG2 (ENSMICG00000004284)	RIC1 (ENSMICG00000016293)	ENSMICG00000030745	ERMP1 (ENSMICG00000016329)	MLANA (ENSMICG00000048054)	KIAA2026 (ENSMICG00000032366)	ENSMICG00000026566	IL33 (ENSMICG00000009247)	ENSMICG00000035564	ENSMICG00000033153 #22	TPD52L3 (ENSMICG00000000600)	UHRF2 (ENSMICG00000036338)	GLDC (ENSMICG00000000602)	KDM4C (ENSMICG00000010464)	DMAC1 (ENSMICG00000035725)	ENSMICG00000035188	ENSMICG00000031481	PTPRD (ENSMICG00000006128)	FBP2 (ENSMICG00000001148)	ENSMICG00000014909	ENSMICG00000047245	ENSMICG00000035231	PRUNE2 (ENSMICG00000042329)	FOXB2 (ENSMICG00000032613)	VPS13A (ENSMICG00000003937)
Mouse lemur	MODERN SPECIES	15	SPINK7 (ENSMICG00000002552)	ENSMICG00000030041 #22	ENSMICG00000046828 ##36	ZNF300 (ENSMICG00000037632)	GPX3 (ENSMICG00000000660) #11	TNIP1 (ENSMICG00000000664) #12	ANXA6 (ENSMICG00000000675) #13	CCDC69 (ENSMICG00000041463) #14	GM2A (ENSMICG00000031216) #15	SLC36A3 (ENSMICG00000000691) #16	SLC36A2 (ENSMICG00000000696) #17	SLC36A1 (ENSMICG00000000700) #18	FAT2 (ENSMICG00000046358) #19	SPARC (ENSMICG00000045601) #20	ATOX1 (ENSMICG00000009954) #21	ENSMICG00000012235 #22	GLRA1 (ENSMICG00000027464) #23	NMUR2 (ENSMICG00000026644) #24	GRIA1 (ENSMICG00000003547) #25	FAM114A2 (ENSMICG00000003553) #26	MFAP3 (ENSMICG00000003560) #27	GALNT10 (ENSMICG00000003562) #28	SAP30L (ENSMICG00000035724) #29	HAND1 (ENSMICG00000030672) #30	LARP1 (ENSMICG00000000837) #31	FAXDC2 (ENSMICG00000000842)	CNOT8 (ENSMICG00000000844) #32	GEMIN5 (ENSMICG00000000846) #33	MRPL22 (ENSMICG00000029267) #34	ENSMICG00000034516	SGCD (ENSMICG00000003017)
Mouse lemur	MODERN SPECIES	15	GLRA1 (ENSMICG00000027464) #23	ENSMICG00000012235 #22	ATOX1 (ENSMICG00000009954) #21	SPARC (ENSMICG00000045601) #20	FAT2 (ENSMICG00000046358) #19	SLC36A1 (ENSMICG00000000700) #18	SLC36A2 (ENSMICG00000000696) #17	SLC36A3 (ENSMICG00000000691) #16	GM2A (ENSMICG00000031216) #15	CCDC69 (ENSMICG00000041463) #14	ANXA6 (ENSMICG00000000675) #13	TNIP1 (ENSMICG00000000664) #12	GPX3 (ENSMICG00000000660) #11	ZNF300 (ENSMICG00000037632)	ENSMICG00000046828 ##36	ENSMICG00000030041 #22	SPINK7 (ENSMICG00000002552)	SPINK9 (ENSMICG00000046265)	FBXO38 (ENSMICG00000002556)	HTR4 (ENSMICG00000002566)	ADRB2 (ENSMICG00000002569)	SH3TC2 (ENSMICG00000002571)	ABLIM3 (ENSMICG00000002582)	AFAP1L1 (ENSMICG00000002598)	GRPEL2 (ENSMICG00000042083)	PCYOX1L (ENSMICG00000028126)	IL17B (ENSMICG00000002611)	CSNK1A1 (ENSMICG00000027056)	ENSMICG00000027812	ARHGEF37 (ENSMICG00000002691)	PPARGC1B (ENSMICG00000002702)
Bushbaby	DUPLICATION
Bushbaby	MODERN SPECIES	168	EPB41L3 (ENSOGAG00000009686)	TMEM200C (ENSOGAG00000027984)	L3MBTL4 (ENSOGAG00000006203)	ENSOGAG00000029999	ARHGAP28 (ENSOGAG00000000195)	ENSOGAG00000026299	LRRC30 (ENSOGAG00000015239)	ENSOGAG00000028007	ENSOGAG00000028060	ENSOGAG00000033163	LMBR1 (ENSOGAG00000002085)	RNF32 (ENSOGAG00000002082)	ENSOGAG00000030068	RBM33 (ENSOGAG00000032262)	ENSOGAG00000024373	ENSOGAG00000029258 #22	ENSOGAG00000005578	EN2 (ENSOGAG00000005579)	INSIG1 (ENSOGAG00000033732)	HTR5A (ENSOGAG00000034672)	PAXIP1 (ENSOGAG00000000702)	DPP6 (ENSOGAG00000008443)	ENSOGAG00000003249	XRCC2 (ENSOGAG00000025679)	CCT8L2 (ENSOGAG00000028124)	ENSOGAG00000006574	ENSOGAG00000034047	GALNT11 (ENSOGAG00000006571)	GALNTL5 (ENSOGAG00000007538)	PRKAG2 (ENSOGAG00000008645)	RHEB (ENSOGAG00000008642)
Bushbaby	MODERN SPECIES	118	ZNF300 (ENSOGAG00000031549)	ENSOGAG00000033243	ENSOGAG00000026462 #11	ENSOGAG00000000343 #11	TNIP1 (ENSOGAG00000000344) #12	ENSOGAG00000011321 #13	ENSOGAG00000034321	CCDC69 (ENSOGAG00000011324) #14	GM2A (ENSOGAG00000026021) #15	SLC36A3 (ENSOGAG00000011328) #16	SLC36A2 (ENSOGAG00000011330) #17	SLC36A1 (ENSOGAG00000015651) #18	FAT2 (ENSOGAG00000015653) #19	SPARC (ENSOGAG00000001725) #20	ATOX1 (ENSOGAG00000013217) #21	G3BP1 (ENSOGAG00000001726) #22	GLRA1 (ENSOGAG00000001729) #23	NMUR2 (ENSOGAG00000003746) #24	GRIA1 (ENSOGAG00000010277) #25	FAM114A2 (ENSOGAG00000010284) #26	MFAP3 (ENSOGAG00000010287) #27	GALNT10 (ENSOGAG00000010292) #28	SAP30L (ENSOGAG00000010296) #29	HAND1 (ENSOGAG00000024691) #30	LARP1 (ENSOGAG00000016750) #31	FAXDC2 (ENSOGAG00000016764)	CNOT8 (ENSOGAG00000016768) #32	GEMIN5 (ENSOGAG00000016771) #33	MRPL22 (ENSOGAG00000016777) #34	SGCD (ENSOGAG00000014032)	ENSOGAG00000027306
Bushbaby	MODERN SPECIES	444																ENSOGAG00000025677 #22	YBX3 (ENSOGAG00000013245)	STYK1 (ENSOGAG00000006243)	ENSOGAG00000013241	ENSOGAG00000029587
Laurasiatheria	ANCESTRAL SPECIES	8	ENSGT00390000006954	ENSGT00390000009443	ENSGT00940000162678	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000011365.a #22
Hedgehog	MODERN SPECIES	4270																G3BP1 (ENSEEUG00000012278) #22
Laurasiatheria_a	ANCESTRAL SPECIES	9	ENSGT00950000182890.D.c.b.a.b.b.b.d.f	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00950000185482	ENSGT00940000162517 #21	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Artiodactyla	ANCESTRAL SPECIES	8	ENSGT00940000162678.d	ENSGT00940000162678.c.b	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00950000185482	ENSGT00940000162517.a #21	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Suina	ANCESTRAL SPECIES	25	ENSGT00390000014771.a	ENSGT00550000074988	ENSGT00390000000183	ENSGT00940000155171.a.b	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Chacoan peccary	MODERN SPECIES	98	CARTPT (ENSCWAG00000001624)	ENSCWAG00000001611	MAP1B (ENSCWAG00000001564)	MRPS27 (ENSCWAG00000001535)	PTCD2 (ENSCWAG00000001468)	ZNF366 (ENSCWAG00000001446)	ENSCWAG00000001435	TNPO1 (ENSCWAG00000001388)	DRD1 (ENSCWAG00000001360)	ENSCWAG00000001349	ENSCWAG00000001335	SLC36A1 (ENSCWAG00000001249) #18	FAT2 (ENSCWAG00000001190) #19	SPARC (ENSCWAG00000001139) #20	ENSCWAG00000001088	G3BP1 (ENSCWAG00000001046) #22	GLRA1 (ENSCWAG00000001007) #23	NMUR2 (ENSCWAG00000000985) #24
Pig	MODERN SPECIES	7	CCT5 (ENSSSCG00000024126)	CMBL (ENSSSCG00000039763)	MARCHF6 (ENSSSCG00000017094)	ENSSSCG00000048920	GPX3 (ENSSSCG00000036438) #11	TNIP1 (ENSSSCG00000017091) #12	ANXA6 (ENSSSCG00000017089) #13	CCDC69 (ENSSSCG00000040411) #14	GM2A (ENSSSCG00000017087) #15	SLC36A3 (ENSSSCG00000038877) #16	SLC36A2 (ENSSSCG00000017086) #17	SLC36A1 (ENSSSCG00000035442) #18	FAT2 (ENSSSCG00000017084) #19	SPARC (ENSSSCG00000017082) #20	ATOX1 (ENSSSCG00000026414)	G3BP1 (ENSSSCG00000035676) #22	GLRA1 (ENSSSCG00000017078) #23	ENSSSCG00000017077	NMUR2 (ENSSSCG00000017076) #24	GRIA1 (ENSSSCG00000022569) #25	FAM114A2 (ENSSSCG00000017073) #26	MFAP3 (ENSSSCG00000034706) #27	GALNT10 (ENSSSCG00000017072) #28	SAP30L (ENSSSCG00000033176) #29	HAND1 (ENSSSCG00000031080) #30	LARP1 (ENSSSCG00000017069) #31	FAXDC2 (ENSSSCG00000017068)	CNOT8 (ENSSSCG00000017067) #32	GEMIN5 (ENSSSCG00000017066) #33	MRPL22 (ENSSSCG00000017065) #34	ENSSSCG00000054270
Artiodactyla_a	ANCESTRAL SPECIES	7	ENSGT00940000162678.d	ENSGT00940000162678.c.b	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00950000185482	ENSGT00940000162517.a #21	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Camelidae	ANCESTRAL SPECIES	1	ENSGT00840000130854	ENSGT00390000009443	ENSGT00940000162678.d	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00910000147868	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509	ENSGT00940000161609
Alpaca	MODERN SPECIES	4168															ENSVPAG00000004463	G3BP1 (ENSVPAG00000004461) #22	GLRA1 (ENSVPAG00000004459) #23
Arabian camel	MODERN SPECIES	22	MYOZ3 (ENSCDRG00005002029)	RBM22 (ENSCDRG00005001978)	SMIM3 (ENSCDRG00005001961)	ZNF300 (ENSCDRG00005001937)	GPX3 (ENSCDRG00005001880) #11	TNIP1 (ENSCDRG00005001911) #12	ANXA6 (ENSCDRG00005001744) #13	CCDC69 (ENSCDRG00005001694) #14	GM2A (ENSCDRG00005001677) #15	SLC36A3 (ENSCDRG00005001650) #16	SLC36A2 (ENSCDRG00005001614) #17	SLC36A1 (ENSCDRG00005001570) #18	SPARC (ENSCDRG00005001545) #20	ENSCDRG00005001536	ENSCDRG00005001526	G3BP1 (ENSCDRG00005001514) #22	GLRA1 (ENSCDRG00005001506) #23	ENSCDRG00005001496	NMUR2 (ENSCDRG00005001477) #24	GRIA1 (ENSCDRG00005001234) #25	ENSCDRG00005001194 #26	MFAP3 (ENSCDRG00005001182) #27	GALNT10 (ENSCDRG00005001110) #28	SAP30L (ENSCDRG00005001071) #29	HAND1 (ENSCDRG00005001057) #30	LARP1 (ENSCDRG00005001014) #31	FAXDC2 (ENSCDRG00005000982)	CNOT8 (ENSCDRG00005000944) #32	GEMIN5 (ENSCDRG00005000876) #33	MRPL22 (ENSCDRG00005000846) #34	ENSCDRG00005000835
Artiodactyla_b	ANCESTRAL SPECIES	8	ENSGT00390000009443	ENSGT00940000162678.d	ENSGT00950000182890.D.c.b.a.b.b.b.d.f.b	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00950000185482	ENSGT00940000162517.a #21	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Cetacea	DUPLICATION
Cetacea	ANCESTRAL SPECIES	1	ENSGT00940000162678.d	ENSGT00950000182890.D.c.b.a.b.b.b.d.f.b	ENSGT00940000162678.c.b	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000005534.b.b.d	ENSGT00390000011365.a.c #22	ENSGT00940000159047 #23	ENSGT00940000157397.z	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00550000074801.g.a	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00390000009443	ENSGT00940000162678.d	ENSGT00950000182890.D.c.b.a.b.b.b.d.f.b	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000005534.b.b.d	ENSGT00390000011365.a.c #22	ENSGT00940000159047 #23	ENSGT00940000157397.z	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00550000074801.g.a	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33
Sperm whale	MODERN SPECIES	19	SMIM3 (ENSPCTG00005000833)	ENSPCTG00005000840	ENSPCTG00005000853	DCTN4 (ENSPCTG00005000869)	RBM22 (ENSPCTG00005000903)	ENSPCTG00005000928	CCDC69 (ENSPCTG00005000950) #14	ENSPCTG00005000968	GM2A (ENSPCTG00005000980) #15	SLC36A3 (ENSPCTG00005001001) #16	SLC36A2 (ENSPCTG00005001024) #17	FAT2 (ENSPCTG00005001069) #19	SPARC (ENSPCTG00005001133) #20	ENSPCTG00005001221	ENSPCTG00005001232	G3BP1 (ENSPCTG00005001253) #22	GLRA1 (ENSPCTG00005001273) #23	ENSPCTG00005001320	NMUR2 (ENSPCTG00005001341) #24	GRIA1 (ENSPCTG00005001422) #25	FAM114A2 (ENSPCTG00005001605) #26	MFAP3 (ENSPCTG00005001678) #27	GALNT10 (ENSPCTG00005001705) #28	SAP30L (ENSPCTG00005001734) #29	HAND1 (ENSPCTG00005001758) #30	FAXDC2 (ENSPCTG00005001788)	LARP1 (ENSPCTG00005001835) #31	GEMIN5 (ENSPCTG00005001900) #33	MRPL22 (ENSPCTG00005002075) #34	ENSPCTG00005002091	ENSPCTG00005002098
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00390000009443	ENSGT00940000162678.d	ENSGT00950000182890.D.c.b.a.b.b.b.d.f.b	ENSGT00940000162678.c.b	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a.c #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00550000074801.g.a	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00390000006954	ENSGT00390000009443	ENSGT00940000162678.d	ENSGT00940000162678.c.b	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a.c #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a.k.b #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00550000074801.g.a.h.b	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34
Vaquita	MODERN SPECIES	14	DCTN4 (ENSPSNG00000015936)	ENSPSNG00000015868	SMIM3 (ENSPSNG00000015829)	ZNF300 (ENSPSNG00000015764)	ENSPSNG00000015722	GPX3 (ENSPSNG00000015660) #11	TNIP1 (ENSPSNG00000015455) #12	ANXA6 (ENSPSNG00000015124) #13	CCDC69 (ENSPSNG00000014966) #14	GM2A (ENSPSNG00000014888) #15	SLC36A2 (ENSPSNG00000014622) #17	SLC36A1 (ENSPSNG00000014497) #18	FAT2 (ENSPSNG00000014211) #19	ENSPSNG00000014149	SPARC (ENSPSNG00000014078) #20	ENSPSNG00000013936 #22	GLRA1 (ENSPSNG00000013677) #23	NMUR2 (ENSPSNG00000013545) #24	GRIA1 (ENSPSNG00000012751) #25	ENSPSNG00000012483 #26	MFAP3 (ENSPSNG00000012395) #27	GALNT10 (ENSPSNG00000012293) #28	SAP30L (ENSPSNG00000012174) #29	HAND1 (ENSPSNG00000012126) #30	ENSPSNG00000012083	LARP1 (ENSPSNG00000012002) #31	ENSPSNG00000011953	FAXDC2 (ENSPSNG00000011773)	CNOT8 (ENSPSNG00000011658) #32	GEMIN5 (ENSPSNG00000011574) #33	MRPL22 (ENSPSNG00000011418) #34
Monodontidae	ANCESTRAL SPECIES	7	ENSGT00390000002792	ENSGT00390000006954	ENSGT00940000162678.d	ENSGT00950000182890.D.c.b.a.b.b.b.d.f.b	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a.c #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a.k.b #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00550000074801.g.a.h.b	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34
Narwhal	MODERN SPECIES	298	DCTN4 (ENSMMNG00015002707)	ZNF300 (ENSMMNG00015002738)	ENSMMNG00015002754	ENSMMNG00015002764	ENSMMNG00015002776	GPX3 (ENSMMNG00015002789) #11	TNIP1 (ENSMMNG00015002828) #12	ANXA6 (ENSMMNG00015002897) #13	CCDC69 (ENSMMNG00015002958) #14	GM2A (ENSMMNG00015002978) #15	SLC36A2 (ENSMMNG00015003022) #17	SLC36A1 (ENSMMNG00015003123) #18	FAT2 (ENSMMNG00015003224) #19	SPARC (ENSMMNG00015003268) #20	ENSMMNG00015003288	ENSMMNG00015003307 #22	GLRA1 (ENSMMNG00015003339) #23	NMUR2 (ENSMMNG00015003381) #24	GRIA1 (ENSMMNG00015003460) #25	ENSMMNG00015003700 #26	MFAP3 (ENSMMNG00015003766) #27	GALNT10 (ENSMMNG00015003839) #28	SAP30L (ENSMMNG00015003902) #29	HAND1 (ENSMMNG00015003927) #30	ENSMMNG00015003938	LARP1 (ENSMMNG00015003970) #31	ENSMMNG00015004023	FAXDC2 (ENSMMNG00015004042)	CNOT8 (ENSMMNG00015004088) #32	GEMIN5 (ENSMMNG00015004178) #33	MRPL22 (ENSMMNG00015004213) #34
Beluga whale	MODERN SPECIES	34	DCTN4 (ENSDLEG00000004947)	ZNF300 (ENSDLEG00000004994)	ENSDLEG00000005001	ENSDLEG00000005013	GPX3 (ENSDLEG00000005023) #11	TNIP1 (ENSDLEG00000005032) #12	ANXA6 (ENSDLEG00000005049) #13	CCDC69 (ENSDLEG00000005083) #14	GM2A (ENSDLEG00000005097) #15	SLC36A3 (ENSDLEG00000005103) #16	SLC36A2 (ENSDLEG00000005112) #17	SLC36A1 (ENSDLEG00000005136) #18	FAT2 (ENSDLEG00000005147) #19	SPARC (ENSDLEG00000005179) #20	ENSDLEG00000005188	G3BP1 (ENSDLEG00000005198) #22	GLRA1 (ENSDLEG00000005226) #23	NMUR2 (ENSDLEG00000005287) #24	GRIA1 (ENSDLEG00000005310) #25	ENSDLEG00000005353 #26	MFAP3 (ENSDLEG00000005383) #27	GALNT10 (ENSDLEG00000005399) #28	SAP30L (ENSDLEG00000005411) #29	HAND1 (ENSDLEG00000005450) #30	ENSDLEG00000005457	LARP1 (ENSDLEG00000005469) #31	ENSDLEG00000005520	FAXDC2 (ENSDLEG00000005531)	CNOT8 (ENSDLEG00000005542) #32	GEMIN5 (ENSDLEG00000005552) #33	MRPL22 (ENSDLEG00000005582) #34
Blue whale	DUPLICATION
Blue whale	MODERN SPECIES	3	HTR1B (ENSBMSG00010014962)	MEI4 (ENSBMSG00010014940)	ENSBMSG00010014910	IRAK1BP1 (ENSBMSG00010014893)	PHIP (ENSBMSG00010014858)	HMGN3 (ENSBMSG00010014805)	LCA5 (ENSBMSG00010014743)	ENSBMSG00010014719	ELOVL4 (ENSBMSG00010014673)	TTK (ENSBMSG00010014603)	BCKDHB (ENSBMSG00010014540)	ENSBMSG00010014511	ENSBMSG00010014491	TENT5A (ENSBMSG00010014385)	ENSBMSG00010014356	ENSBMSG00010014338 #22	IBTK (ENSBMSG00010014267)	TPBG (ENSBMSG00010014234)	ENSBMSG00010014221	UBE3D (ENSBMSG00010014192)	DOP1A (ENSBMSG00010013981)	PGM3 (ENSBMSG00010011334)	RWDD2A (ENSBMSG00010011300)	ME1 (ENSBMSG00010011286)	ENSBMSG00010011265	PRSS35 (ENSBMSG00010011257)	SNAP91 (ENSBMSG00010011047)	RIPPLY2 (ENSBMSG00010010972)	CYB5R4 (ENSBMSG00010010955)	MRAP2 (ENSBMSG00010010923)	CEP162 (ENSBMSG00010010866)
Blue whale	MODERN SPECIES	14	DCTN4 (ENSBMSG00010002338)	ZNF300 (ENSBMSG00010002389)	ENSBMSG00010002404	GPX3 (ENSBMSG00010002420) #11	TNIP1 (ENSBMSG00010002447) #12	ANXA6 (ENSBMSG00010002529) #13	CCDC69 (ENSBMSG00010002604) #14	GM2A (ENSBMSG00010002617) #15	SLC36A3 (ENSBMSG00010002627) #16	SLC36A2 (ENSBMSG00010002645) #17	SLC36A1 (ENSBMSG00010002669) #18	FAT2 (ENSBMSG00010002819) #19	SPARC (ENSBMSG00010002853) #20	ENSBMSG00010002870	ENSBMSG00010002883	ENSBMSG00010002891 #22	GLRA1 (ENSBMSG00010002904) #23	ENSBMSG00010002920	NMUR2 (ENSBMSG00010002927) #24	GRIA1 (ENSBMSG00010002960) #25	ENSBMSG00010003045 #26	MFAP3 (ENSBMSG00010003083) #27	GALNT10 (ENSBMSG00010003097) #28	SAP30L (ENSBMSG00010003112) #29	HAND1 (ENSBMSG00010003128) #30	ENSBMSG00010003135	LARP1 (ENSBMSG00010003146) #31	FAXDC2 (ENSBMSG00010003173)	CNOT8 (ENSBMSG00010003244) #32	GEMIN5 (ENSBMSG00010003267) #33	MRPL22 (ENSBMSG00010003280) #34
Cetacea	ANCESTRAL SPECIES	6	ENSGT00390000015893	ENSGT00390000018698	ENSGT00940000157319	ENSGT00950000182863.A.a.a	ENSGT00940000153533.b	ENSGT00400000025006	ENSGT00650000093476	ENSGT00390000010337.B.a.a	ENSGT00390000010938	ENSGT00500000045333.c.b.a.b	ENSGT00940000157175	ENSGT00940000154848	ENSGT00960000191311	ENSGT00940000162132	ENSGT00400000022168.b	ENSGT00390000011365.a.d #22	ENSGT00940000156879	ENSGT00390000015672	ENSGT00940000158295	ENSGT00940000157499	ENSGT00940000157187	ENSGT00940000156131.a.b	ENSGT00550000075019	ENSGT00940000161738	ENSGT00740000117161.a	ENSGT00940000160211.e	ENSGT00940000162331	ENSGT00940000157672	ENSGT00940000160052	ENSGT00940000161047	ENSGT00940000154494.b
Blue whale	MODERN SPECIES	10	PDF (ENSBMSG00010020890)	VPS4A (ENSBMSG00010020879)	SNTB2 (ENSBMSG00010020847)	UTP4 (ENSBMSG00010020740)	DERPC (ENSBMSG00010020706)	CHTF8 (ENSBMSG00010020676)	HAS3 (ENSBMSG00010020644)	ENSBMSG00010020622	TANGO6 (ENSBMSG00010020605)	ENSBMSG00010020594	CDH1 (ENSBMSG00010020552)	CDH3 (ENSBMSG00010020324)	ENSBMSG00010020230	ZFP90 (ENSBMSG00010020197)	SMPD3 (ENSBMSG00010020162)	ENSBMSG00010020150 #22	PRMT7 (ENSBMSG00010020129)	SLC7A6OS (ENSBMSG00010020097)	SLC7A6 (ENSBMSG00010020066)	PLA2G15 (ENSBMSG00010020026)	ESRP2 (ENSBMSG00010019976)	NFATC3 (ENSBMSG00010019932)	DUS2 (ENSBMSG00010019889)	ENSBMSG00010019862	ENSBMSG00010019846	ENSBMSG00010019833	ENSBMSG00010019811	DPEP3 (ENSBMSG00010019770)	SLC12A4 (ENSBMSG00010019678)	LCAT (ENSBMSG00010019638)	PSMB10 (ENSBMSG00010019618)
Odontoceti	ANCESTRAL SPECIES	6	ENSGT00390000015893	ENSGT00390000018698	ENSGT00940000157319	ENSGT00950000182863.A.a.a	ENSGT00940000153533.b	ENSGT00400000025006	ENSGT00650000093476	ENSGT00390000010337.B.a.a	ENSGT00390000010938	ENSGT00500000045333.c.b.a.b	ENSGT00940000157175	ENSGT00940000154848	ENSGT00960000191311	ENSGT00940000162132	ENSGT00400000022168.b	ENSGT00390000011365.a.d #22	ENSGT00940000156879	ENSGT00390000015672	ENSGT00940000158295	ENSGT00940000157499	ENSGT00940000157187	ENSGT00940000156131.a.b	ENSGT00550000075019	ENSGT00940000161738	ENSGT00740000117161.a	ENSGT00940000160211.e	ENSGT00940000162331	ENSGT00940000157672	ENSGT00940000160052	ENSGT00940000161047	ENSGT00940000154494.b
Sperm whale	MODERN SPECIES	2	DCLRE1C (ENSPCTG00005009594)	SUV39H2 (ENSPCTG00005009985)	HSPA14 (ENSPCTG00005010039)	ENSPCTG00005010104	CDNF (ENSPCTG00005010145)	FAM107B (ENSPCTG00005010187)	ENSPCTG00005010275	FRMD4A (ENSPCTG00005010361)	PRPF18 (ENSPCTG00005010858)	ENSPCTG00005010897	BEND7 (ENSPCTG00005010939)	PHYH (ENSPCTG00005010989)	UCMA (ENSPCTG00005011066)	MCM10 (ENSPCTG00005011186)	OPTN (ENSPCTG00005011312)	ENSPCTG00005011354 #22	GJD4 (ENSPCTG00005011420)	FZD8 (ENSPCTG00005011487)	GAD2 (ENSPCTG00005011554)	MYO3A (ENSPCTG00005000572)	GPR158 (ENSPCTG00005000644)	ENSPCTG00005000685	THNSL1 (ENSPCTG00005000693)	ENKUR (ENSPCTG00005000710)	PRTFDC1 (ENSPCTG00005000745)	ARHGAP21 (ENSPCTG00005000826)	KIAA1217 (ENSPCTG00005001014)	ENSPCTG00005001440	OTUD1 (ENSPCTG00005001454)	ENSPCTG00005001466	PTF1A (ENSPCTG00005001474)
Odontoceti_a	DUPLICATION
Odontoceti_a	ANCESTRAL SPECIES	7	ENSGT00390000015893	ENSGT00390000018698	ENSGT00940000157319	ENSGT00950000182863.A.a.a	ENSGT00940000153533.b	ENSGT00400000025006	ENSGT00650000093476	ENSGT00390000010337.B.a.a	ENSGT00390000010938	ENSGT00500000045333.c.b.a.b	ENSGT00940000157175	ENSGT00940000154848	ENSGT00960000191311	ENSGT00940000162132	ENSGT00400000022168.b	ENSGT00390000011365.a.d.a #22	ENSGT00940000156879	ENSGT00390000015672	ENSGT00940000158295	ENSGT00940000157499	ENSGT00940000157187	ENSGT00940000156131.a.b	ENSGT00550000075019	ENSGT00940000161738	ENSGT00740000117161.a	ENSGT00940000160211.f	ENSGT00940000160211.e	ENSGT00940000162331	ENSGT00940000157672	ENSGT00940000160052	ENSGT00940000161047
Odontoceti_b	ANCESTRAL SPECIES	5	ENSGT00390000015893	ENSGT00390000018698	ENSGT00940000157319	ENSGT00950000182863.A.a.a	ENSGT00940000153533.b	ENSGT00400000025006	ENSGT00650000093476	ENSGT00390000010337.B.a.a	ENSGT00390000010938	ENSGT00500000045333.c.b.a.b	ENSGT00940000157175	ENSGT00940000154848	ENSGT00960000191311	ENSGT00940000162132	ENSGT00400000022168.b	ENSGT00390000011365.a.d.a #22	ENSGT00940000156879	ENSGT00390000015672	ENSGT00940000158295	ENSGT00940000157499	ENSGT00940000157187	ENSGT00940000156131.a.b	ENSGT00550000075019	ENSGT00940000161738	ENSGT00740000117161.a	ENSGT00940000160211.f	ENSGT00940000162331	ENSGT00940000157672	ENSGT00940000160052	ENSGT00940000161047	ENSGT00940000154494.b
Monodontidae	ANCESTRAL SPECIES	3	ENSGT00390000018698	ENSGT00940000157319	ENSGT00950000182863.A.a.a	ENSGT00940000153533.b	ENSGT00400000025006	ENSGT00650000093476	ENSGT00390000010337.B.a.a	ENSGT00390000010938	ENSGT00940000157175	ENSGT00500000045333.c.b.a.b	ENSGT00940000154848	ENSGT00960000191311	ENSGT00940000162132	ENSGT00400000022168.b	ENSGT00940000156879	ENSGT00390000011365.a.d.a #22	ENSGT00390000015672	ENSGT00940000158295	ENSGT00940000157499	ENSGT00940000157187	ENSGT00940000156131.a.b	ENSGT00550000075019	ENSGT00940000161738	ENSGT00740000117161.a	ENSGT00940000160211.f	ENSGT00940000162331	ENSGT00940000157672	ENSGT00940000160052	ENSGT00940000161047	ENSGT00940000154494.b	ENSGT00940000157041.a
Beluga whale	MODERN SPECIES	12	PDF (ENSDLEG00000001970)	VPS4A (ENSDLEG00000001984)	SNTB2 (ENSDLEG00000002001)	UTP4 (ENSDLEG00000002031)	CHTF8 (ENSDLEG00000002070)	DERPC (ENSDLEG00000002081)	HAS3 (ENSDLEG00000002086)	TANGO6 (ENSDLEG00000002125)	ENSDLEG00000002265	CDH1 (ENSDLEG00000002277)	ENSDLEG00000002291	CDH3 (ENSDLEG00000002313)	ZFP90 (ENSDLEG00000002356)	SMPD3 (ENSDLEG00000002359)	PRMT7 (ENSDLEG00000002379)	ENSDLEG00000002409 #22	SLC7A6OS (ENSDLEG00000002422)	ENSDLEG00000002446	ENSDLEG00000002491	PLA2G15 (ENSDLEG00000002498)	ESRP2 (ENSDLEG00000002569)	NFATC3 (ENSDLEG00000002789)	DUS2 (ENSDLEG00000002912)	DDX28 (ENSDLEG00000002943)	ENSDLEG00000002948	DPEP3 (ENSDLEG00000002961)	SLC12A4 (ENSDLEG00000002978)	LCAT (ENSDLEG00000002994)	PSMB10 (ENSDLEG00000003004)	CTRL (ENSDLEG00000003029)	PSKH1 (ENSDLEG00000003047)
Narwhal	MODERN SPECIES	296	PDF (ENSMMNG00015000041)	VPS4A (ENSMMNG00015000074)	SNTB2 (ENSMMNG00015000109)	UTP4 (ENSMMNG00015000184)	CHTF8 (ENSMMNG00015000355)	HAS3 (ENSMMNG00015000394)	TANGO6 (ENSMMNG00015000428)	ENSMMNG00015000473	CDH1 (ENSMMNG00015000503)	ENSMMNG00015000536	CDH3 (ENSMMNG00015000556)	ENSMMNG00015000607	ZFP90 (ENSMMNG00015000636)	SMPD3 (ENSMMNG00015000662)	PRMT7 (ENSMMNG00015000723)	ENSMMNG00015000792 #22	SLC7A6OS (ENSMMNG00015000812)	SLC7A6 (ENSMMNG00015000843)	PLA2G15 (ENSMMNG00015000906)	ESRP2 (ENSMMNG00015000987)	NFATC3 (ENSMMNG00015001052)	DUS2 (ENSMMNG00015001112)	DDX28 (ENSMMNG00015001154)	ENSMMNG00015001169	DPEP3 (ENSMMNG00015001187)	SLC12A4 (ENSMMNG00015001317)	LCAT (ENSMMNG00015001543)	PSMB10 (ENSMMNG00015001572)	CTRL (ENSMMNG00015001624)	PSKH1 (ENSMMNG00015001661)	ENSMMNG00015001676
Vaquita	MODERN SPECIES	10	PDF (ENSPSNG00000012094)	VPS4A (ENSPSNG00000011978)	SNTB2 (ENSPSNG00000011871)	UTP4 (ENSPSNG00000011522)	ENSPSNG00000011461	DERPC (ENSPSNG00000011414)	HAS3 (ENSPSNG00000022055)	ENSPSNG00000022045	TANGO6 (ENSPSNG00000022022)	ENSPSNG00000022009	CDH1 (ENSPSNG00000021982)	CDH3 (ENSPSNG00000021931)	ENSPSNG00000021909	ZFP90 (ENSPSNG00000021885)	SMPD3 (ENSPSNG00000021848)	ENSPSNG00000021821 #22	PRMT7 (ENSPSNG00000021770)	SLC7A6OS (ENSPSNG00000021726)	SLC7A6 (ENSPSNG00000021709)	PLA2G15 (ENSPSNG00000021665)	ESRP2 (ENSPSNG00000021626)	NFATC3 (ENSPSNG00000021586)	DUS2 (ENSPSNG00000021529)	DDX28 (ENSPSNG00000021483)	ENSPSNG00000021462	DPEP3 (ENSPSNG00000021424)	SLC12A4 (ENSPSNG00000021302)	LCAT (ENSPSNG00000021256)	PSMB10 (ENSPSNG00000021236)	CTRL (ENSPSNG00000021216)	ENSPSNG00000021193
Odontoceti_a	ANCESTRAL SPECIES																	ENSGT00390000011365.a.d.b #22
Odontoceti_b	ANCESTRAL SPECIES																	ENSGT00390000011365.a.d.b #22
Monodontidae	ANCESTRAL SPECIES																	ENSGT00390000011365.a.d.b #22
Narwhal	MODERN SPECIES	312	ENSMMNG00015013449	FRMPD1 (ENSMMNG00015013472)	TRMT10B (ENSMMNG00015013498)	EXOSC3 (ENSMMNG00015013539)	DCAF10 (ENSMMNG00015013550)	ENSMMNG00015013567	SHB (ENSMMNG00015013592)	ALDH1B1 (ENSMMNG00015013610)	IGFBPL1 (ENSMMNG00015013626)	ENSMMNG00015013679	CCDC180 (ENSMMNG00015013789)	TDRD7 (ENSMMNG00015013833)	TMOD1 (ENSMMNG00015013847)	TSTD2 (ENSMMNG00015013865)	NCBP1 (ENSMMNG00015013890)	ENSMMNG00015013928 #22	XPA (ENSMMNG00015013944)	ENSMMNG00015013957	FOXE1 (ENSMMNG00015013964)	TRMO (ENSMMNG00015013980)	HEMGN (ENSMMNG00015013994)	ANP32B (ENSMMNG00015014014)	NANS (ENSMMNG00015014033)	CORO2A (ENSMMNG00015014061)	TBC1D2 (ENSMMNG00015014079)	GABBR2 (ENSMMNG00015014122)	ANKS6 (ENSMMNG00015014152)	GALNT12 (ENSMMNG00015014167)	COL15A1 (ENSMMNG00015014199)	TGFBR1 (ENSMMNG00015014246)	ALG2 (ENSMMNG00015014272)
Dolphin	MODERN SPECIES	2113															ENSTTRG00000009059	G3BP1 (ENSTTRG00000009072) #22	GLRA1 (ENSTTRG00000009123) #23
Pecora	ANCESTRAL SPECIES		ENSGT00390000009443	ENSGT00940000162678.d	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780.e	ENSGT00950000185482	ENSGT00940000162517.a #21	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Yarkand deer	MODERN SPECIES	32	ENSCHYG00000006075	ENSCHYG00000009177	GPX3 (ENSCHYG00000009216) #11	TNIP1 (ENSCHYG00000009276) #12	ANXA6 (ENSCHYG00000009608) #13	CCDC69 (ENSCHYG00000010276) #14	GM2A (ENSCHYG00000010332) #15	SLC36A3 (ENSCHYG00000010361) #16	ENSCHYG00000010422	SLC36A2 (ENSCHYG00000010468) #17	SLC36A1 (ENSCHYG00000010573) #18	FAT2 (ENSCHYG00000010698) #19	SPARC (ENSCHYG00000010867) #20	ENSCHYG00000010996	ENSCHYG00000011020 #21	G3BP1 (ENSCHYG00000011097) #22	GLRA1 (ENSCHYG00000011170) #23	NMUR2 (ENSCHYG00000011292) #24	GRIA1 (ENSCHYG00000011374) #25	FAM114A2 (ENSCHYG00000011772) #26	MFAP3 (ENSCHYG00000012108) #27	GALNT10 (ENSCHYG00000012158) #28	ENSCHYG00000012437 #29	HAND1 (ENSCHYG00000012541) #30	ENSCHYG00000012584	LARP1 (ENSCHYG00000012618) #31	ENSCHYG00000012708	ENSCHYG00000012741	CNOT8 (ENSCHYG00000012798) #32	GEMIN5 (ENSCHYG00000012924) #33	MRPL22 (ENSCHYG00000013068) #34
Percora_a	ANCESTRAL SPECIES		ENSGT00390000009443	ENSGT00940000162678.d	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00950000185482	ENSGT00940000162517.a #21	ENSGT00940000163780.e	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Bovidae	ANCESTRAL SPECIES		ENSGT00390000009443	ENSGT00940000162678.d	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00950000185482	ENSGT00940000162517.a #21	ENSGT00940000163780.e	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Caprinae	ANCESTRAL SPECIES	3	ENSGT00390000002792	ENSGT00390000006954	ENSGT00390000009443	ENSGT00940000162678.d	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770.n #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780.e	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a.c #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Rambouillet Sheep	DUPLICATION
Rambouillet Sheep	MODERN SPECIES	21	SYNPO (ENSOARG00020013674)	MYOZ3 (ENSOARG00020013724)	RBM22 (ENSOARG00020013787)	DCTN4 (ENSOARG00020013939)	SMIM3 (ENSOARG00020014435)	ZNF300 (ENSOARG00020014457)	GPX3 (ENSOARG00020014488) #11	TNIP1 (ENSOARG00020014574) #12	ANXA6 (ENSOARG00020014885) #13	CCDC69 (ENSOARG00020015595) #14	SLC36A2 (ENSOARG00020015753) #17	SLC36A1 (ENSOARG00020016094) #18	FAT2 (ENSOARG00020016340) #19	SPARC (ENSOARG00020017166) #20	ATOX1 (ENSOARG00020017245)	ENSOARG00020017316 #22	GLRA1 (ENSOARG00020017407) #23	ENSOARG00020017487	NMUR2 (ENSOARG00020017502) #24	ENSOARG00020017549	ENSOARG00020017570	GRIA1 (ENSOARG00020017612) #25	FAM114A2 (ENSOARG00020018007) #26	MFAP3 (ENSOARG00020018373) #27	GALNT10 (ENSOARG00020018437) #28	SAP30L (ENSOARG00020019252) #29	HAND1 (ENSOARG00020019349) #30	LARP1 (ENSOARG00020019445) #31	ENSOARG00020019710	CNOT8 (ENSOARG00020019840) #32	GEMIN5 (ENSOARG00020020038) #33
Rambouillet Sheep	MODERN SPECIES	17	TMEM26 (ENSOARG00020024213)	RHOBTB1 (ENSOARG00020024171)	CDK1 (ENSOARG00020024130)	ENSOARG00020024112	ANK3 (ENSOARG00020023359)	CCDC6 (ENSOARG00020023260)	MRLN (ENSOARG00020023237)	SLC16A9 (ENSOARG00020023213)	FAM13C (ENSOARG00020022210)	PHYHIPL (ENSOARG00020022039)	BICC1 (ENSOARG00020021901)	ENSOARG00020021844	FXYD4 (ENSOARG00020021800)	RASGEF1A (ENSOARG00020021661)	CSGALNACT2 (ENSOARG00020021613)	ENSOARG00020021602 #22	RET (ENSOARG00020021522)	ENSOARG00020021502	BMS1 (ENSOARG00020021336)	ENSOARG00020021277	ENSOARG00020021255	ZNF248 (ENSOARG00020021209)	ENSOARG00020021022	ZNF25 (ENSOARG00020020987)	ENSOARG00020020945	ZNF33B (ENSOARG00020020852)	CHRM3 (ENSOARG00020020814)	ZP4 (ENSOARG00020020715)	ENSOARG00020020560	RYR2 (ENSOARG00020019907)	MTR (ENSOARG00020019401)
Goat	MODERN SPECIES	26	RBM22 (ENSCHIG00000015561)	DCTN4 (ENSCHIG00000023539)	SMIM3 (ENSCHIG00000009961)	ZNF300 (ENSCHIG00000016822)	GPX3 (ENSCHIG00000022658) #11	TNIP1 (ENSCHIG00000024962) #12	ENSCHIG00000016366 #13	CCDC69 (ENSCHIG00000013748) #14	GM2A (ENSCHIG00000026255) #15	SLC36A3 (ENSCHIG00000024700) #16	SLC36A2 (ENSCHIG00000013721) #17	SLC36A1 (ENSCHIG00000012262) #18	FAT2 (ENSCHIG00000008233) #19	SPARC (ENSCHIG00000020972) #20	ENSCHIG00000011535	G3BP1 (ENSCHIG00000015936) #22	GLRA1 (ENSCHIG00000017210) #23	ENSCHIG00000012822	NMUR2 (ENSCHIG00000025403) #24	GRIA1 (ENSCHIG00000014013) #25	FAM114A2 (ENSCHIG00000002961) #26	MFAP3 (ENSCHIG00000019306) #27	ENSCHIG00000024888	GALNT10 (ENSCHIG00000017035) #28	ENSCHIG00000011850 #29	HAND1 (ENSCHIG00000002958) #30	LARP1 (ENSCHIG00000014414) #31	ENSCHIG00000020455	FAXDC2 (ENSCHIG00000003558)	CNOT8 (ENSCHIG00000016161) #32	GEMIN5 (ENSCHIG00000026197) #33
Bovinae	ANCESTRAL SPECIES	2	ENSGT00390000009443	ENSGT00940000162678.d	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00950000185482	ENSGT00940000162517.a #21	ENSGT00940000163780.e	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Bos	ANCESTRAL SPECIES	3	ENSGT00390000009443	ENSGT00940000162678.d	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00950000185482	ENSGT00940000162517.a #21	ENSGT00940000163780.e	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT01100000263480.a.b.b.a.b.b.a.a.a.b.b.a.b.b.a.b	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577.n #31	ENSGT00950000183345	ENSGT00940000159577.m #31	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33
Bos_b	ANCESTRAL SPECIES	2	ENSGT00390000006954	ENSGT00390000009443	ENSGT00940000162678.d	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00950000185482	ENSGT00940000163780.e	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00390000008903.g.a.a.a.b	ENSGT00940000156690 #28	ENSGT01100000263480.a.b.b.a.b.b.a.a.a.b.b.a.b.b.a.b	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577.n #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33
Cow	MODERN SPECIES	26	ENSBTAG00000052241	ZNF300 (ENSBTAG00000025124)	GPX3 (ENSBTAG00000043553) #11	TNIP1 (ENSBTAG00000012671) #12	ANXA6 (ENSBTAG00000014809) #13	CCDC69 (ENSBTAG00000002834) #14	GM2A (ENSBTAG00000021829) #15	SLC36A3 (ENSBTAG00000006624) #16	SLC36A2 (ENSBTAG00000020809) #17	SLC36A1 (ENSBTAG00000016094) #18	FAT2 (ENSBTAG00000003498) #19	ENSBTAG00000053965	SPARC (ENSBTAG00000014835) #20	ENSBTAG00000054940	ATOX1 (ENSBTAG00000008340)	G3BP1 (ENSBTAG00000020309) #22	GLRA1 (ENSBTAG00000014395) #23	NMUR2 (ENSBTAG00000011131) #24	GRIA1 (ENSBTAG00000005800) #25	FAM114A2 (ENSBTAG00000017078) #26	MFAP3 (ENSBTAG00000017079) #27	SMIM15 (ENSBTAG00000048033)	GALNT10 (ENSBTAG00000034113) #28	SAP30L (ENSBTAG00000004000) #29	HAND1 (ENSBTAG00000002335) #30	LARP1 (ENSBTAG00000008443) #31	ENSBTAG00000048681	CNOT8 (ENSBTAG00000012086) #32	GEMIN5 (ENSBTAG00000012095) #33	MRPL22 (ENSBTAG00000019457) #34	SGCD (ENSBTAG00000044046)
Hybrid Bos Indicus	MODERN SPECIES	26	SMIM3 (ENSBIXG00005006042)	ZNF300 (ENSBIXG00005003566)	GPX3 (ENSBIXG00005021147) #11	TNIP1 (ENSBIXG00005007676) #12	ANXA6 (ENSBIXG00005021615) #13	CCDC69 (ENSBIXG00005021685) #14	GM2A (ENSBIXG00005021708) #15	SLC36A3 (ENSBIXG00005003667) #16	SLC36A2 (ENSBIXG00005006047) #17	SLC36A1 (ENSBIXG00005021878) #18	ENSBIXG00005003692	FAT2 (ENSBIXG00005003699) #19	ENSBIXG00005021959	SPARC (ENSBIXG00005022027) #20	ENSBIXG00005022056	G3BP1 (ENSBIXG00005022125) #22	GLRA1 (ENSBIXG00005022149) #23	NMUR2 (ENSBIXG00005022178) #24	GRIA1 (ENSBIXG00005022376) #25	FAM114A2 (ENSBIXG00005003877) #26	MFAP3 (ENSBIXG00005022679) #27	ENSBIXG00005003887	GALNT10 (ENSBIXG00005022744) #28	ENSBIXG00005022774	SAP30L (ENSBIXG00005003903) #29	HAND1 (ENSBIXG00005022857) #30	LARP1 (ENSBIXG00005022895) #31	ENSBIXG00005022922	ENSBIXG00005022990	CNOT8 (ENSBIXG00005023096) #32	GEMIN5 (ENSBIXG00005023208) #33
Bos_a	ANCESTRAL SPECIES	2	ENSGT00940000162678.d	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00670000098165.E	ENSGT00510000046787.e.b #20	ENSGT00950000185482	ENSGT00940000162517.a #21	ENSGT00940000163780.e	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT01100000263480.a.b.b.a.b.b.a.a.a.b.b.a.b.b.a.b	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577.n #31	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00390000016972.a.a.b.b.b.a.a
Wild yak	MODERN SPECIES	977										SLC36A1 (ENSBMUG00000011677) #18	FAT2 (ENSBMUG00000011728) #19	ENSBMUG00000011738	SPARC (ENSBMUG00000011750) #20	ENSBMUG00000011764	ENSBMUG00000011784	G3BP1 (ENSBMUG00000011817) #22	GLRA1 (ENSBMUG00000011837) #23
Domestic yak	MODERN SPECIES	27	GPX3 (ENSBGRG00000006702) #11	TNIP1 (ENSBGRG00000006723) #12	ANXA6 (ENSBGRG00000006833) #13	CCDC69 (ENSBGRG00000007157) #14	ENSBGRG00000007196	GM2A (ENSBGRG00000007223) #15	SLC36A3 (ENSBGRG00000007244) #16	SLC36A2 (ENSBGRG00000007400) #17	SLC36A1 (ENSBGRG00000007583) #18	FAT2 (ENSBGRG00000008568) #19	ENSBGRG00000008959	ENSBGRG00000008969	SPARC (ENSBGRG00000008993) #20	ENSBGRG00000009237	ATOX1 (ENSBGRG00000009256) #21	G3BP1 (ENSBGRG00000009329) #22	GLRA1 (ENSBGRG00000009521) #23	ENSBGRG00000009735	NMUR2 (ENSBGRG00000009768) #24	ENSBGRG00000009893	GRIA1 (ENSBGRG00000009927) #25	ENSBGRG00000010081	FAM114A2 (ENSBGRG00000010100) #26	MFAP3 (ENSBGRG00000010249) #27	ENSBGRG00000010312	ENSBGRG00000010322	GALNT10 (ENSBGRG00000010337) #28	ENSBGRG00000010396	SAP30L (ENSBGRG00000010435) #29	HAND1 (ENSBGRG00000010553) #30	ENSBGRG00000010630 #31
American bison	MODERN SPECIES	3206	DCTN4 (ENSBBBG00000023126)	SMIM3 (ENSBBBG00000007286)	ZNF300 (ENSBBBG00000023051)	GPX3 (ENSBBBG00000023039) #11	TNIP1 (ENSBBBG00000023012) #12	ANXA6 (ENSBBBG00000022863) #13	CCDC69 (ENSBBBG00000005977) #14	GM2A (ENSBBBG00000022694) #15	SLC36A3 (ENSBBBG00000005970) #16	SLC36A2 (ENSBBBG00000022667) #17	SLC36A1 (ENSBBBG00000022635) #18	FAT2 (ENSBBBG00000022537) #19	SPARC (ENSBBBG00000022477) #20	ENSBBBG00000006924	ATOX1 (ENSBBBG00000022460) #21	G3BP1 (ENSBBBG00000022442) #22	GLRA1 (ENSBBBG00000022402) #23	ENSBBBG00000022386	NMUR2 (ENSBBBG00000022378) #24
Siberian musk deer	DUPLICATION
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	64	SMIM3 (ENSMMSG00000002397)	ZNF300 (ENSMMSG00000002410)	ENSMMSG00000002441	GPX3 (ENSMMSG00000002469) #11	TNIP1 (ENSMMSG00000002511) #12	ANXA6 (ENSMMSG00000002639) #13	CCDC69 (ENSMMSG00000002788) #14	GM2A (ENSMMSG00000002811) #15	SLC36A3 (ENSMMSG00000002829) #16	SLC36A2 (ENSMMSG00000002854) #17	SLC36A1 (ENSMMSG00000002888) #18	FAT2 (ENSMMSG00000002934) #19	SPARC (ENSMMSG00000002983) #20	ENSMMSG00000003004	ENSMMSG00000003014	ENSMMSG00000003041 #22	GLRA1 (ENSMMSG00000003073) #23	NMUR2 (ENSMMSG00000003100) #24	GRIA1 (ENSMMSG00000003129) #25	FAM114A2 (ENSMMSG00000003214) #26	ENSMMSG00000003251 #27	GALNT10 (ENSMMSG00000003282) #28	SAP30L (ENSMMSG00000003388) #29	HAND1 (ENSMMSG00000003405) #30	LARP1 (ENSMMSG00000003430) #31	FAXDC2 (ENSMMSG00000003482)	CNOT8 (ENSMMSG00000003528) #32	ENSMMSG00000003559	GEMIN5 (ENSMMSG00000003579) #33	MRPL22 (ENSMMSG00000003627) #34	ENSMMSG00000003656
Siberian musk deer	MODERN SPECIES	337	SASS6 (ENSMMSG00000016832)	TRMT13 (ENSMMSG00000016719)	LRRC39 (ENSMMSG00000016687)	ENSMMSG00000016618	DBT (ENSMMSG00000016584)	RTCA (ENSMMSG00000016510)	CDC14A (ENSMMSG00000016353)	GPR88 (ENSMMSG00000016324)	ENSMMSG00000016284	ENSMMSG00000016205	EXTL2 (ENSMMSG00000016154)	SLC30A7 (ENSMMSG00000016069)	DPH5 (ENSMMSG00000016029)	S1PR1 (ENSMMSG00000016009)	OLFM3 (ENSMMSG00000015900)	ENSMMSG00000015858 #22	COL11A1 (ENSMMSG00000015553)	RNPC3 (ENSMMSG00000015406)	ENSMMSG00000015368	ENSMMSG00000015313	ENSMMSG00000019688	ENSMMSG00000019671
Siberian musk deer	MODERN SPECIES	180											EYA1 (ENSMMSG00000010939)	XKR9 (ENSMMSG00000012696)	LACTB2 (ENSMMSG00000012731)	TRAM1 (ENSMMSG00000012761)	NCOA2 (ENSMMSG00000012815)	ENSMMSG00000013038 #22	ENSMMSG00000014622	PRDM14 (ENSMMSG00000014653)	SLCO5A1 (ENSMMSG00000014697)	SULF1 (ENSMMSG00000014966)	ENSMMSG00000015051	C8orf34 (ENSMMSG00000015077)	PREX2 (ENSMMSG00000015154)	ENSMMSG00000015212	CPA6 (ENSMMSG00000015224)	ARFGEF1 (ENSMMSG00000015257)	CSPP1 (ENSMMSG00000015343)	ENSMMSG00000015389	COPS5 (ENSMMSG00000015410)	PPP1R42 (ENSMMSG00000015452)	TCF24 (ENSMMSG00000015504)
Laurasiatheria_b	ANCESTRAL SPECIES	9	ENSGT00940000162678.c.b	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00950000185482	ENSGT00940000162517 #21	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Laurasiatheria_c	ANCESTRAL SPECIES	7	ENSGT00390000009443	ENSGT00940000162678.d	ENSGT00940000162678.c.b	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Equus	ANCESTRAL SPECIES	6	ENSGT00390000006954	ENSGT00390000009443	ENSGT00940000162678.d.fb	ENSGT00940000162678.c.b	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT01090000261928.b.b.b	ENSGT00620000088064 #33	ENSGT00390000002110 #34
Horse	MODERN SPECIES	5	DCTN4 (ENSECAG00000011275)	ZNF300 (ENSECAG00000008211)	ENSECAG00000042718	GPX3 (ENSECAG00000042952) #11	TNIP1 (ENSECAG00000010862) #12	ANXA6 (ENSECAG00000022500) #13	CCDC69 (ENSECAG00000022291) #14	GM2A (ENSECAG00000020587) #15	SLC36A3 (ENSECAG00000018019) #16	SLC36A2 (ENSECAG00000011961) #17	SLC36A1 (ENSECAG00000025152) #18	ENSECAG00000028849 #18	FAT2 (ENSECAG00000023329) #19	SPARC (ENSECAG00000013874) #20	ENSECAG00000044027	G3BP1 (ENSECAG00000003368) #22	GLRA1 (ENSECAG00000022523) #23	NMUR2 (ENSECAG00000020285) #24	GRIA1 (ENSECAG00000020849) #25	FAM114A2 (ENSECAG00000016187) #26	MFAP3 (ENSECAG00000017960) #27	GALNT10 (ENSECAG00000006979) #28	HAND1 (ENSECAG00000005327) #30	LARP1 (ENSECAG00000017002) #31	FAXDC2 (ENSECAG00000014962)	ENSECAG00000054688	CNOT8 (ENSECAG00000013294) #32	GEMIN5 (ENSECAG00000020479) #33	ENSECAG00000055011	ENSECAG00000045171	MRPL22 (ENSECAG00000018172) #34
Donkey	MODERN SPECIES	29	DCTN4 (ENSEASG00005002678)	SMIM3 (ENSEASG00005002674)	ZNF300 (ENSEASG00005023628)	ENSEASG00005002671	ENSEASG00005033941	GPX3 (ENSEASG00005035825) #11	TNIP1 (ENSEASG00005002006) #12	ANXA6 (ENSEASG00005001496) #13	CCDC69 (ENSEASG00005001426) #14	ENSEASG00005001425 #15	SLC36A3 (ENSEASG00005001395) #16	SLC36A2 (ENSEASG00005001376) #17	SLC36A1 (ENSEASG00005001369) #18	FAT2 (ENSEASG00005001252) #19	SPARC (ENSEASG00005001241) #20	G3BP1 (ENSEASG00005001232) #22	GLRA1 (ENSEASG00005001178) #23	NMUR2 (ENSEASG00005001147) #24	GRIA1 (ENSEASG00005001130) #25	FAM114A2 (ENSEASG00005001111) #26	MFAP3 (ENSEASG00005001108) #27	GALNT10 (ENSEASG00005001101) #28	SAP30L (ENSEASG00005037967) #29	HAND1 (ENSEASG00005001085) #30	LARP1 (ENSEASG00005001070) #31	ENSEASG00005001061	FAXDC2 (ENSEASG00005001054)	CNOT8 (ENSEASG00005001043) #32	ENSEASG00005030181	GEMIN5 (ENSEASG00005001026) #33	MRPL22 (ENSEASG00005036401) #34
Chiroptera	ANCESTRAL SPECIES	1	ENSGT00390000006954	ENSGT00390000009443	ENSGT00940000162678.d	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Megabat	MODERN SPECIES	2503															ENSPVAG00000017249	G3BP1 (ENSPVAG00000017250) #22	GLRA1 (ENSPVAG00000017251) #23
Microchiroptera	ANCESTRAL SPECIES	3	ENSGT00390000006954	ENSGT00390000009443	ENSGT00940000162678.d	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Microbat	MODERN SPECIES	993	SMIM3 (ENSMLUG00000029590)	ENSMLUG00000009277	GPX3 (ENSMLUG00000009296) #11	TNIP1 (ENSMLUG00000009310) #12	ANXA6 (ENSMLUG00000013100) #13	ENSMLUG00000022717	CCDC69 (ENSMLUG00000013111) #14	ENSMLUG00000027448	GM2A (ENSMLUG00000003215) #15	SLC36A3 (ENSMLUG00000003218) #16	SLC36A2 (ENSMLUG00000003225) #17	SLC36A1 (ENSMLUG00000003614) #18	FAT2 (ENSMLUG00000003620) #19	SPARC (ENSMLUG00000003628) #20	ENSMLUG00000009741	G3BP1 (ENSMLUG00000001581) #22	GLRA1 (ENSMLUG00000001588) #23	NMUR2 (ENSMLUG00000005055) #24	GRIA1 (ENSMLUG00000002344) #25	FAM114A2 (ENSMLUG00000015138) #26	MFAP3 (ENSMLUG00000009094) #27	GALNT10 (ENSMLUG00000009097) #28	SAP30L (ENSMLUG00000008911) #29	HAND1 (ENSMLUG00000008901) #30	LARP1 (ENSMLUG00000002608) #31	FAXDC2 (ENSMLUG00000002623)	CNOT8 (ENSMLUG00000016833) #32	GEMIN5 (ENSMLUG00000016836) #33	MRPL22 (ENSMLUG00000016853) #34	SGCD (ENSMLUG00000005733)	ENSMLUG00000005736
Greater horseshoe bat	MODERN SPECIES	16	MYOZ3 (ENSRFEG00010013242)	RBM22 (ENSRFEG00010013329)	DCTN4 (ENSRFEG00010013385)	ENSRFEG00010013504	ENSRFEG00010013580	GPX3 (ENSRFEG00010013613) #11	TNIP1 (ENSRFEG00010013753) #12	ANXA6 (ENSRFEG00010014025) #13	CCDC69 (ENSRFEG00010014214) #14	GM2A (ENSRFEG00010014263) #15	SLC36A2 (ENSRFEG00010014284) #17	SLC36A1 (ENSRFEG00010014375) #18	FAT2 (ENSRFEG00010014461) #19	SPARC (ENSRFEG00010014523) #20	ENSRFEG00010014581 #21	G3BP1 (ENSRFEG00010014658) #22	GLRA1 (ENSRFEG00010014730) #23	NMUR2 (ENSRFEG00010014779) #24	GRIA1 (ENSRFEG00010014883) #25	FAM114A2 (ENSRFEG00010015177) #26	MFAP3 (ENSRFEG00010015622) #27	GALNT10 (ENSRFEG00010015684) #28	SAP30L (ENSRFEG00010015805) #29	HAND1 (ENSRFEG00010015955) #30	LARP1 (ENSRFEG00010016026) #31	ENSRFEG00010016127	FAXDC2 (ENSRFEG00010016139)	CNOT8 (ENSRFEG00010016294) #32	GEMIN5 (ENSRFEG00010016457) #33	MRPL22 (ENSRFEG00010016549) #34	ENSRFEG00010016610
Carnivora	ANCESTRAL SPECIES	8	ENSGT00940000162678.d	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00950000185482	ENSGT00940000162517 #21	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Felidae	ANCESTRAL SPECIES	6	ENSGT00940000162678.d	ENSGT00950000182890.D.c.b.a.b.b.b.d.f	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00950000185482	ENSGT00940000162517.g #21	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Panthera	ANCESTRAL SPECIES	6	ENSGT00390000009443	ENSGT00940000162678.d	ENSGT00950000182890.D.c.b.a.b.b.b.d.f	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00950000185482	ENSGT00940000162517.g #21	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Tiger	MODERN SPECIES	422	RBM22 (ENSPTIG00000004453)	DCTN4 (ENSPTIG00000007333)	SMIM3 (ENSPTIG00000006768)	ZNF300 (ENSPTIG00000011038)	GPX3 (ENSPTIG00000012289) #11	TNIP1 (ENSPTIG00000014378) #12	ANXA6 (ENSPTIG00000010886) #13	CCDC69 (ENSPTIG00000017398) #14	GM2A (ENSPTIG00000018148) #15	SLC36A3 (ENSPTIG00000018400) #16	SLC36A2 (ENSPTIG00000018593) #17	SLC36A1 (ENSPTIG00000000380) #18	FAT2 (ENSPTIG00000009798) #19	SPARC (ENSPTIG00000012238) #20	ATOX1 (ENSPTIG00000012701) #21	G3BP1 (ENSPTIG00000013868) #22	GLRA1 (ENSPTIG00000016860) #23
Panthera_a	ANCESTRAL SPECIES	3	ENSGT00390000009443.i	ENSGT00940000162678.d	ENSGT00950000182890.D.c.b.a.b.b.b.d.f	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00950000185482	ENSGT00940000162517.g #21	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01090000260100.A.l	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00950000182922.a.a.a.a
leopard	MODERN SPECIES	44	RBM22 (ENSPPRG00000011577)	DCTN4 (ENSPPRG00000010427)	ENSPPRG00000014899	ZNF300 (ENSPPRG00000008915)	GPX3 (ENSPPRG00000006416) #11	TNIP1 (ENSPPRG00000005176) #12	ANXA6 (ENSPPRG00000017597) #13	CCDC69 (ENSPPRG00000011070) #14	GM2A (ENSPPRG00000010718) #15	SLC36A3 (ENSPPRG00000010329) #16	SLC36A2 (ENSPPRG00000009957) #17	SLC36A1 (ENSPPRG00000008839) #18	FAT2 (ENSPPRG00000004934) #19	SPARC (ENSPPRG00000003950) #20	ENSPPRG00000003301 #21	G3BP1 (ENSPPRG00000002960) #22	GLRA1 (ENSPPRG00000002733) #23	ENSPPRG00000002590	NMUR2 (ENSPPRG00000002057) #24	GRIA1 (ENSPPRG00000000764) #25	FAM114A2 (ENSPPRG00000021677) #26	MFAP3 (ENSPPRG00000013801) #27	GALNT10 (ENSPPRG00000013465) #28	SAP30L (ENSPPRG00000010604) #29	HAND1 (ENSPPRG00000010229) #30	LARP1 (ENSPPRG00000009780) #31	ENSPPRG00000020529	FAXDC2 (ENSPPRG00000008823)	CNOT8 (ENSPPRG00000007589) #32	GEMIN5 (ENSPPRG00000005867) #33	ENSPPRG00000005081
lion	MODERN SPECIES		ZNF300 (ENSPLOG00000000038)	ENSPLOG00000000048	ENSPLOG00000000067	GPX3 (ENSPLOG00000000075) #11	TNIP1 (ENSPLOG00000000091) #12	ANXA6 (ENSPLOG00000000151) #13	CCDC69 (ENSPLOG00000000256) #14	GM2A (ENSPLOG00000000268) #15	SLC36A3 (ENSPLOG00000000288) #16	SLC36A2 (ENSPLOG00000000323) #17	SLC36A1 (ENSPLOG00000000354) #18	FAT2 (ENSPLOG00000000395) #19	SPARC (ENSPLOG00000000436) #20	ENSPLOG00000000450	ENSPLOG00000000467 #21	G3BP1 (ENSPLOG00000000488) #22	GLRA1 (ENSPLOG00000000546) #23	ENSPLOG00000000631	NMUR2 (ENSPLOG00000000651) #24	GRIA1 (ENSPLOG00000000743) #25	FAM114A2 (ENSPLOG00000000872) #26	MFAP3 (ENSPLOG00000000917) #27	GALNT10 (ENSPLOG00000000962) #28	SAP30L (ENSPLOG00000001027) #29	HAND1 (ENSPLOG00000001058) #30	LARP1 (ENSPLOG00000001096) #31	ENSPLOG00000001148	FAXDC2 (ENSPLOG00000001182)	CNOT8 (ENSPLOG00000001245) #32	GEMIN5 (ENSPLOG00000001280) #33	ENSPLOG00000001309
Cat	MODERN SPECIES		SMIM3 (ENSFCAG00000030067)	ZNF300 (ENSFCAG00000022219)	ENSFCAG00000048045	GPX3 (ENSFCAG00000012876) #11	TNIP1 (ENSFCAG00000012877) #12	ANXA6 (ENSFCAG00000012878) #13	ENSFCAG00000047708	CCDC69 (ENSFCAG00000036060) #14	GM2A (ENSFCAG00000012881) #15	SLC36A3 (ENSFCAG00000036333) #16	SLC36A1 (ENSFCAG00000012885) #18	FAT2 (ENSFCAG00000023532) #19	ENSFCAG00000047333	SPARC (ENSFCAG00000006015) #20	ATOX1 (ENSFCAG00000006018) #21	G3BP1 (ENSFCAG00000006019) #22	GLRA1 (ENSFCAG00000019295) #23	NMUR2 (ENSFCAG00000012203) #24	GRIA1 (ENSFCAG00000005223) #25	FAM114A2 (ENSFCAG00000023708) #26	MFAP3 (ENSFCAG00000028091) #27	GALNT10 (ENSFCAG00000014984) #28	SAP30L (ENSFCAG00000014985) #29	HAND1 (ENSFCAG00000014986) #30	LARP1 (ENSFCAG00000000592) #31	FAXDC2 (ENSFCAG00000000593)	CNOT8 (ENSFCAG00000000594) #32	GEMIN5 (ENSFCAG00000000595) #33	MRPL22 (ENSFCAG00000036527) #34	ENSFCAG00000053803	SGCD (ENSFCAG00000023950)
Caniformia	ANCESTRAL SPECIES	5	ENSGT00390000009443	ENSGT00940000162678.d	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00950000185482	ENSGT00940000162517 #21	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Caniformia_b	ANCESTRAL SPECIES	4	ENSGT00390000006954	ENSGT00390000009443	ENSGT00950000185765	ENSGT00940000162678.d	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Mustelinae	ANCESTRAL SPECIES	13	ENSGT00390000006954	ENSGT00390000009443	ENSGT00950000185765	ENSGT00940000162678.d	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000162517 #21	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000153511.a.n.a	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Ferret	MODERN SPECIES	162	SMIM3 (ENSMPUG00000019319)	ZNF300 (ENSMPUG00000013725)	ENSMPUG00000013723	ENSMPUG00000013720	GPX3 (ENSMPUG00000013709) #11	TNIP1 (ENSMPUG00000013705) #12	ANXA6 (ENSMPUG00000013696) #13	CCDC69 (ENSMPUG00000013690) #14	GM2A (ENSMPUG00000013687) #15	SLC36A3 (ENSMPUG00000013683) #16	SLC36A2 (ENSMPUG00000013680) #17	SLC36A1 (ENSMPUG00000013678) #18	FAT2 (ENSMPUG00000013674) #19	SPARC (ENSMPUG00000013670) #20	ATOX1 (ENSMPUG00000013666) #21	G3BP1 (ENSMPUG00000013661) #22	GLRA1 (ENSMPUG00000013655) #23	NMUR2 (ENSMPUG00000013636) #24	ENSMPUG00000013617	GRIA1 (ENSMPUG00000013604) #25	FAM114A2 (ENSMPUG00000013600) #26	MFAP3 (ENSMPUG00000013596) #27	GALNT10 (ENSMPUG00000013590) #28	ENSMPUG00000019318	SAP30L (ENSMPUG00000013575) #29	HAND1 (ENSMPUG00000013570) #30	LARP1 (ENSMPUG00000013564) #31	FAXDC2 (ENSMPUG00000013555)	CNOT8 (ENSMPUG00000013552) #32	GEMIN5 (ENSMPUG00000013538) #33	MRPL22 (ENSMPUG00000013533) #34
American mink	DUPLICATION
American mink	MODERN SPECIES	18	SMIM3 (ENSNVIG00000021036)	ENSNVIG00000021034	ZNF300 (ENSNVIG00000021017)	ENSNVIG00000021005	GPX3 (ENSNVIG00000020987) #11	TNIP1 (ENSNVIG00000020776) #12	ANXA6 (ENSNVIG00000020630) #13	CCD69 (ENSNVIG00000020608) #14	GM2A (ENSNVIG00000020588) #15	SLC36A3 (ENSNVIG00000020564) #16	SLC36A2 (ENSNVIG00000020528) #17	SLC36A1 (ENSNVIG00000020485) #18	FAT2 (ENSNVIG00000020441) #19	SPARC (ENSNVIG00000020426) #20	ATOX1 (ENSNVIG00000020412) #21	G3BP1 (ENSNVIG00000020368) #22	GLRA1 (ENSNVIG00000020349) #23	NMUR2 (ENSNVIG00000020322) #24	ENSNVIG00000020318	ENSNVIG00000020301	GRIA1 (ENSNVIG00000020177) #25	FAM114A2 (ENSNVIG00000019997) #26	MFAP3 (ENSNVIG00000019949) #27	GALNT10 (ENSNVIG00000019902) #28	SAP30L (ENSNVIG00000019864) #29	HAND1 (ENSNVIG00000019849) #30	LARP1 (ENSNVIG00000019836) #31	FAXDC2 (ENSNVIG00000019791)	CNOT8 (ENSNVIG00000019737) #32	GEMIN5 (ENSNVIG00000019410) #33	MRPL22 (ENSNVIG00000019379) #34
American mink	MODERN SPECIES	305															OTOL1 (ENSNVIG00000003318)	ENSNVIG00000003310 #22	SPTSB (ENSNVIG00000003283)	NMD3 (ENSNVIG00000003234)	ENSNVIG00000003212	PPM1L (ENSNVIG00000003109)	ARL14 (ENSNVIG00000003076)	KPNA4 (ENSNVIG00000003031)
Ursidae	ANCESTRAL SPECIES	24	ENSGT00390000009443	ENSGT00950000185765	ENSGT00940000162678.d	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770.l #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b.a.b #20	ENSGT00940000163780.a.b	ENSGT00940000163780.a.a	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Giant Panda	MODERN SPECIES	13	SMIM3 (ENSAMEG00000020120)	ZNF300 (ENSAMEG00000004509)	ENSAMEG00000023482	ENSAMEG00000008342	GPX3 (ENSAMEG00000008334) #11	TNIP1 (ENSAMEG00000008256) #12	ANXA6 (ENSAMEG00000008161) #13	CCDC69 (ENSAMEG00000008138) #14	GM2A (ENSAMEG00000008134) #15	SLC36A3 (ENSAMEG00000008126) #16	SLC36A2 (ENSAMEG00000008093) #17	SLC36A1 (ENSAMEG00000008049) #18	FAT2 (ENSAMEG00000007976) #19	SPARC (ENSAMEG00000007909) #20	ENSAMEG00000030472	G3BP1 (ENSAMEG00000007833) #22	GLRA1 (ENSAMEG00000007792) #23	NMUR2 (ENSAMEG00000007782) #24	ENSAMEG00000024739	GRIA1 (ENSAMEG00000014413) #25	FAM114A2 (ENSAMEG00000004029) #26	MFAP3 (ENSAMEG00000004047) #27	GALNT10 (ENSAMEG00000016701) #28	HAND1 (ENSAMEG00000024671) #30	LARP1 (ENSAMEG00000016673) #31	FAXDC2 (ENSAMEG00000016665)	CNOT8 (ENSAMEG00000016651) #32	GEMIN5 (ENSAMEG00000016618) #33	MRPL22 (ENSAMEG00000023722) #34	SGCD (ENSAMEG00000005961)	ENSAMEG00000024339
Ursus	ANCESTRAL SPECIES	10	ENSGT00390000006954	ENSGT00390000009443	ENSGT00950000185765	ENSGT00940000162678.d	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770.l #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b.a.b #20	ENSGT00940000163780.a.a	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT00950000186222	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34
American black bear	MODERN SPECIES	4279																G3BP1 (ENSUAMG00000008140) #22	GLRA1 (ENSUAMG00000008082) #23	ENSUAMG00000008078
Polar bear	MODERN SPECIES	179	ENSUMAG00000003622	ZNF300 (ENSUMAG00000003611)	ENSUMAG00000003605	ENSUMAG00000003601	GPX3 (ENSUMAG00000003587) #11	TNIP1 (ENSUMAG00000003564) #12	ANXA6 (ENSUMAG00000003545) #13	CCDC69 (ENSUMAG00000003524) #14	GM2A (ENSUMAG00000003513) #15	SLC36A3 (ENSUMAG00000003399) #16	SLC36A2 (ENSUMAG00000003368) #17	SLC36A1 (ENSUMAG00000003360) #18	FAT2 (ENSUMAG00000003325) #19	SPARC (ENSUMAG00000003309) #20	ENSUMAG00000003302	G3BP1 (ENSUMAG00000003295) #22	GLRA1 (ENSUMAG00000003228) #23	ENSUMAG00000003220	NMUR2 (ENSUMAG00000003212) #24	GRIA1 (ENSUMAG00000003146) #25	ENSUMAG00000003112 #26	MFAP3 (ENSUMAG00000003088) #27	GALNT10 (ENSUMAG00000003064) #28	ENSUMAG00000003059	SAP30L (ENSUMAG00000003056) #29	ENSUMAG00000003053 #30	LARP1 (ENSUMAG00000002934) #31	FAXDC2 (ENSUMAG00000002913)	CNOT8 (ENSUMAG00000002910) #32	GEMIN5 (ENSUMAG00000002730) #33	MRPL22 (ENSUMAG00000002718) #34
Canidae	ANCESTRAL SPECIES	7	ENSGT00940000162678.d	ENSGT00980000203244	ENSGT00940000154586.m.b	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00950000185482	ENSGT00940000162517.e.b.a #21	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a.f #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110.m #34	ENSGT00940000158509
Canis_lupus	ANCESTRAL SPECIES	12	ENSGT00940000163029.f	ENSGT00980000203244	ENSGT00940000154586.m.b	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00950000185482	ENSGT00940000162517.e.b.a #21	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a.f #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110.m #34	ENSGT00940000176159
Dingo	MODERN SPECIES	324	ENSCAFG00020023688	ENSCAFG00020023690	ENSCAFG00020023691	GPX3 (ENSCAFG00020023697) #11	TNIP1 (ENSCAFG00020023698) #12	ANXA6 (ENSCAFG00020023702) #13	ENSCAFG00020023705 #14	GM2A (ENSCAFG00020023706) #15	SLC36A3 (ENSCAFG00020023708) #16	SLC36A2 (ENSCAFG00020023730) #17	SLC36A1 (ENSCAFG00020023736) #18	FAT2 (ENSCAFG00020023748) #19	SPARC (ENSCAFG00020023758) #20	ENSCAFG00020023759	ENSCAFG00020023761 #21	G3BP1 (ENSCAFG00020023763) #22	GLRA1 (ENSCAFG00020023770) #23	ENSCAFG00020023805	NMUR2 (ENSCAFG00020023806) #24	GRIA1 (ENSCAFG00020023810) #25	ENSCAFG00020023829 #26	MFAP3 (ENSCAFG00020023843) #27	GALNT10 (ENSCAFG00020023844) #28	ENSCAFG00020023846	SAP30L (ENSCAFG00020023847) #29	HAND1 (ENSCAFG00020023848) #30	LARP1 (ENSCAFG00020023860) #31	ENSCAFG00020023867	FAXDC2 (ENSCAFG00020023871)	CNOT8 (ENSCAFG00020023876) #32	GEMIN5 (ENSCAFG00020023889) #33
Dog	MODERN SPECIES	32	ENSCAFG00845006081	ENSCAFG00845006066	ENSCAFG00845006048	ENSCAFG00845006013	GPX3 (ENSCAFG00845005989) #11	TNIP1 (ENSCAFG00845005879) #12	ANXA6 (ENSCAFG00845005581) #13	CCDC69 (ENSCAFG00845005451) #14	GM2A (ENSCAFG00845005428) #15	SLC36A2 (ENSCAFG00845005365) #17	SLC36A1 (ENSCAFG00845005291) #18	FAT2 (ENSCAFG00845005247) #19	ENSCAFG00845005232	SPARC (ENSCAFG00845005166) #20	ATOX1 (ENSCAFG00845005141) #21	G3BP1 (ENSCAFG00845005119) #22	GLRA1 (ENSCAFG00845005085) #23	NMUR2 (ENSCAFG00845005069) #24	GRIA1 (ENSCAFG00845005055) #25	FAM114A2 (ENSCAFG00845005016) #26	MFAP3 (ENSCAFG00845005006) #27	GALNT10 (ENSCAFG00845004992) #28	SAP30L (ENSCAFG00845004964) #29	HAND1 (ENSCAFG00845004947) #30	ENSCAFG00845004937	LARP1 (ENSCAFG00845004900) #31	ENSCAFG00845004883	FAXDC2 (ENSCAFG00845004857)	CNOT8 (ENSCAFG00845004828) #32	GEMIN5 (ENSCAFG00845002726) #33	MRPL22 (ENSCAFG00845002699) #34
Red fox	DUPLICATION
Red fox	MODERN SPECIES	2	ZNF300 (ENSVVUG00000007103)	ENSVVUG00000007096	ENSVVUG00000007085	GPX3 (ENSVVUG00000007074) #11	TNIP1 (ENSVVUG00000007038) #12	ANXA6 (ENSVVUG00000007007) #13	CCDC69 (ENSVVUG00000006931) #14	GM2A (ENSVVUG00000006924) #15	SLC36A3 (ENSVVUG00000006903) #16	SLC36A2 (ENSVVUG00000006880) #17	SLC36A1 (ENSVVUG00000006873) #18	FAT2 (ENSVVUG00000005651) #19	SPARC (ENSVVUG00000005577) #20	ENSVVUG00000005574	ENSVVUG00000005568 #21	G3BP1 (ENSVVUG00000005396) #22	GLRA1 (ENSVVUG00000005306) #23	NMUR2 (ENSVVUG00000005262) #24	GRIA1 (ENSVVUG00000004888) #25	ENSVVUG00000004715 #26	MFAP3 (ENSVVUG00000004700) #27	ENSVVUG00000004696	GALNT10 (ENSVVUG00000004691) #28	ENSVVUG00000004680 #29	HAND1 (ENSVVUG00000004676) #30	LARP1 (ENSVVUG00000004644) #31	ENSVVUG00000004640	FAXDC2 (ENSVVUG00000004639)	CNOT8 (ENSVVUG00000004633) #32	GEMIN5 (ENSVVUG00000004623) #33	ENSVVUG00000004617
Red fox	DUPLICATION
Red fox	MODERN SPECIES	176	PLEKHO1 (ENSVVUG00000007828)	VPS45 (ENSVVUG00000007786)	OTUD7B (ENSVVUG00000007773)	MTMR11 (ENSVVUG00000007745)	ENSVVUG00000007732	SV2A (ENSVVUG00000007726)	BOLA1 (ENSVVUG00000007718)	H2AC21 (ENSVVUG00000007714)	H2AC20 (ENSVVUG00000007707)	H2BC21 (ENSVVUG00000007671)	ENSVVUG00000007660	H3-7 (ENSVVUG00000007640)	H2BC18 (ENSVVUG00000007606)	ENSVVUG00000007601	ENSVVUG00000007595	ENSVVUG00000007591 #22	FCGR1A (ENSVVUG00000007556)	ENSVVUG00000007552	HJV (ENSVVUG00000007529)	TXNIP (ENSVVUG00000007524)	POLR3GL (ENSVVUG00000007497)	ANKRD34A (ENSVVUG00000007494)	LIX1L (ENSVVUG00000007490)	RBM8A (ENSVVUG00000007486)	PEX11B (ENSVVUG00000007477)	ITGA10 (ENSVVUG00000007459)	ANKRD35 (ENSVVUG00000007450)	PIAS3 (ENSVVUG00000007435)	NUDT17 (ENSVVUG00000007427)	POLR3C (ENSVVUG00000007421)	RNF115 (ENSVVUG00000007415)
Red fox	MODERN SPECIES	275												SPIN2B (ENSVVUG00000015548)	ENSVVUG00000015546	ENSVVUG00000015541	NBDY (ENSVVUG00000015536)	ENSVVUG00000015532 #22	UBQLN2 (ENSVVUG00000015530)	ENSVVUG00000015517	KLF8 (ENSVVUG00000015513)	ENSVVUG00000015508	ATP5ME (ENSVVUG00000015497)	ENSVVUG00000015491	RRAGB (ENSVVUG00000015486)
Atlantogenata	ANCESTRAL SPECIES		ENSGT00390000006954	ENSGT00390000009443	ENSGT00940000162678	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509	ENSGT00940000161609
Xenarthra	ANCESTRAL SPECIES	400							ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23
Sloth	MODERN SPECIES	3783																ENSCHOG00000010802 #22
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	408															ENSDNOG00000044064	ENSDNOG00000045769 #22	ENSDNOG00000012608
Armadillo	MODERN SPECIES	1034						ANXA6 (ENSDNOG00000008697) #13	CCDC69 (ENSDNOG00000035057) #14	GM2A (ENSDNOG00000042400) #15	SLC36A3 (ENSDNOG00000019271) #16	SLC36A2 (ENSDNOG00000043935) #17	SLC36A1 (ENSDNOG00000019229) #18	FAT2 (ENSDNOG00000034136) #19	SPARC (ENSDNOG00000031703) #20	ENSDNOG00000039823	ENSDNOG00000009139	ENSDNOG00000018758 #22	GLRA1 (ENSDNOG00000012718) #23
Afrotheria	ANCESTRAL SPECIES	7	ENSGT00390000002792	ENSGT00390000006954	ENSGT00390000009443	ENSGT00950000183007.a.b.g.a.b.a ##36	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509	ENSGT00940000161609
Tenrec	MODERN SPECIES	4135																G3BP1 (ENSETEG00000017447) #22	GLRA1 (ENSETEG00000017450) #23
Afrotheria_a	ANCESTRAL SPECIES	7	ENSGT00390000002792	ENSGT00390000006954	ENSGT00390000009443	ENSGT00950000183007.a.b.g.a.b.a ##36	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509	ENSGT00940000161609
Hyrax	MODERN SPECIES	3437																G3BP1 (ENSPCAG00000001484) #22	GLRA1 (ENSPCAG00000001512) #23
Elephant	MODERN SPECIES	2	ENSLAFG00000027033 ##36	ENSLAFG00000031011 ##36	GPX3 (ENSLAFG00000020856) #11	TNIP1 (ENSLAFG00000018389) #12	ANXA6 (ENSLAFG00000018391) #13	ENSLAFG00000029680	ENSLAFG00000010040 #14	ENSLAFG00000032400	GM2A (ENSLAFG00000013672) #15	SLC36A2 (ENSLAFG00000016871) #17	ENSLAFG00000031631 #17	SLC36A1 (ENSLAFG00000008327) #18	FAT2 (ENSLAFG00000008329) #19	SPARC (ENSLAFG00000017920) #20	ENSLAFG00000017926	G3BP1 (ENSLAFG00000009182) #22	GLRA1 (ENSLAFG00000021726) #23	NMUR2 (ENSLAFG00000031406) #24	GRIA1 (ENSLAFG00000013665) #25	FAM114A2 (ENSLAFG00000001974) #26	MFAP3 (ENSLAFG00000005375) #27	GALNT10 (ENSLAFG00000008266) #28	SAP30L (ENSLAFG00000002292) #29	HAND1 (ENSLAFG00000017517) #30	LARP1 (ENSLAFG00000008991) #31	FAXDC2 (ENSLAFG00000008997)	CNOT8 (ENSLAFG00000009852) #32	GEMIN5 (ENSLAFG00000009857) #33	MRPL22 (ENSLAFG00000009866) #34	ENSLAFG00000025663	SGCD (ENSLAFG00000015083)
Marsupialia	DUPLICATION
Marsupialia	ANCESTRAL SPECIES	9	ENSGT00940000158334	ENSGT00940000156647	ENSGT00940000161098	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000156583.a.a #18	ENSGT00940000156583.a.b #18	ENSGT00940000156583.b #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509	ENSGT00940000161609
Marsupialia_b	ANCESTRAL SPECIES	5	ENSGT00940000158334	ENSGT00940000156647	ENSGT00940000161098	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000156583.a.a #18	ENSGT00940000156583.a.b #18	ENSGT00940000156583.b #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509	ENSGT00940000161609
Diprotodontia	ANCESTRAL SPECIES	6	ENSGT00940000153503.b.b.a	ENSGT00940000158334	ENSGT00940000156647	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000156583.a.a #18	ENSGT00940000156583.a.b #18	ENSGT00940000156583.b #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509	ENSGT00940000161609
Diprotodontia_a	ANCESTRAL SPECIES	7	ENSGT00940000153503.b.b.a	ENSGT00940000158334	ENSGT00940000156647	ENSGT00940000161754.c #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000156583.a.a #18	ENSGT00940000156583.a.b #18	ENSGT00940000156583.b #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509	ENSGT00940000161609
koala	MODERN SPECIES	151	NDST1 (ENSPCIG00000007977)	ENSPCIG00000007921	RUFY1 (ENSPCIG00000007818)	ADAMTS2 (ENSPCIG00000024262)	TNIP1 (ENSPCIG00000028596) #12	ENSPCIG00000028598 #11	ANXA6 (ENSPCIG00000028590) #13	CCDC69 (ENSPCIG00000028587) #14	ENSPCIG00000028586 #15	ENSPCIG00000034387 #18	ENSPCIG00000028585 #18	ENSPCIG00000028584 #18	FAT2 (ENSPCIG00000028484) #19	SPARC (ENSPCIG00000028482) #20	ENSPCIG00000031232	ENSPCIG00000010359 #22	GLRA1 (ENSPCIG00000010362) #23	NMUR2 (ENSPCIG00000007098) #24
Common wonbat	MODERN SPECIES	1087	ENSVURG00010007600	RUFY1 (ENSVURG00010007573)	ADAMTS2 (ENSVURG00010006800)	GPX3 (ENSVURG00010006412) #11	TNIP1 (ENSVURG00010006352) #12	ANXA6 (ENSVURG00010006294) #13	ENSVURG00010006271	CCDC69 (ENSVURG00010006261) #14	ENSVURG00010006249 #15	ENSVURG00010006213 #18	ENSVURG00010006202 #18	ENSVURG00010006189 #18	FAT2 (ENSVURG00010006127) #19	SPARC (ENSVURG00010006108) #20	ENSVURG00010006090	G3BP1 (ENSVURG00010006069) #22	GLRA1 (ENSVURG00010005833) #23	NMUR2 (ENSVURG00010005758) #24	ENSVURG00010005716	GRIA1 (ENSVURG00010005382) #25	ENSVURG00010005340	FAM114A2 (ENSVURG00010005330) #26	MFAP3 (ENSVURG00010005318) #27	GALNT10 (ENSVURG00010005297) #28	SAP30L (ENSVURG00010005280) #29	HAND1 (ENSVURG00010005268) #30	LARP1 (ENSVURG00010005070) #31	FAXDC2 (ENSVURG00010005023)	ENSVURG00010004975 #32	GEMIN5 (ENSVURG00010004936) #33	MRPL22 (ENSVURG00010004914) #34
Tasmanian devil	MODERN SPECIES	1	RPS14 (ENSSHAG00000025299)	ENSSHAG00000018096	ENSSHAG00000018204	ENSSHAG00000018205	ENSSHAG00000018488	ENSSHAG00000001286	TNIP1 (ENSSHAG00000031953) #12	ANXA6 (ENSSHAG00000023993) #13	ENSSHAG00000002492 #14	ENSSHAG00000023155 #15	ENSSHAG00000023006 #18	ENSSHAG00000001683 #18	ENSSHAG00000004583 #18	FAT2 (ENSSHAG00000005530) #19	ENSSHAG00000007301 #20	G3BP1 (ENSSHAG00000008357) #22	GLRA1 (ENSSHAG00000008615) #23	NMUR2 (ENSSHAG00000027327) #24	GRIA1 (ENSSHAG00000027358) #25	FAM114A2 (ENSSHAG00000028673) #26	MFAP3 (ENSSHAG00000001535) #27	GALNT10 (ENSSHAG00000008308) #28	SAP30L (ENSSHAG00000008928) #29	HAND1 (ENSSHAG00000009358) #30	LARP1 (ENSSHAG00000011115) #31	FAXDC2 (ENSSHAG00000011294)	CNOT8 (ENSSHAG00000029841) #32	GEMIN5 (ENSSHAG00000011898) #33	MRPL22 (ENSSHAG00000012127) #34	ENSSHAG00000023532	ENSSHAG00000026969
Opossum	DUPLICATION
Opossum	DUPLICATION
Opossum	MODERN SPECIES		ENSMODG00000047911	TNIP1 (ENSMODG00000009314) #12	ANXA6 (ENSMODG00000009301) #13	ENSMODG00000009261	CCDC69 (ENSMODG00000049591) #14	GM2A (ENSMODG00000041349) #15	ENSMODG00000025741 #18	ENSMODG00000038775	ENSMODG00000009116 #18	ENSMODG00000023726	ENSMODG00000009087 #18	FAT2 (ENSMODG00000009050) #19	ENSMODG00000023724	SPARC (ENSMODG00000009028) #20	ENSMODG00000009005	ENSMODG00000008993 #22	GLRA1 (ENSMODG00000008959) #23	NMUR2 (ENSMODG00000008916) #24	ENSMODG00000048440	GRIA1 (ENSMODG00000008900) #25	MFAP3 (ENSMODG00000049635) #27	FAM114A2 (ENSMODG00000008822) #26	GALNT10 (ENSMODG00000008702) #28	HAND1 (ENSMODG00000008678) #30	LARP1 (ENSMODG00000008663) #31	ENSMODG00000040983	FAXDC2 (ENSMODG00000008620)	CNOT8 (ENSMODG00000008609) #32	GEMIN5 (ENSMODG00000008598) #33	MRPL22 (ENSMODG00000008561) #34	SGCD (ENSMODG00000008547)
Opossum	MODERN SPECIES	7	TTC26 (ENSMODG00000013759)	ENSMODG00000013769	ENSMODG00000024430	KIAA1549 (ENSMODG00000013782)	ATP6V0A4 (ENSMODG00000013805)	SVOPL (ENSMODG00000013814)	TRIM24 (ENSMODG00000013826)	ENSMODG00000047173	AKR1D1 (ENSMODG00000013856)	ENSMODG00000013879	CREB3L2 (ENSMODG00000013876)	DGKI (ENSMODG00000013890)	PTN (ENSMODG00000013899)	ENSMODG00000028341	CHRM2 (ENSMODG00000024440)	ENSMODG00000013903 #22	ENSMODG00000013952	ENSMODG00000038676	ENSMODG00000028052	ENSMODG00000029218	ENSMODG00000042806	FAM180A (ENSMODG00000050525)	SLC13A4 (ENSMODG00000013989)	NUP205 (ENSMODG00000014060)	CNOT4 (ENSMODG00000014068)	ENSMODG00000047110	ENSMODG00000014075	STRA8 (ENSMODG00000014081)	ENSMODG00000048305	WDR91 (ENSMODG00000014097)	ENSMODG00000014100
Opossum	MODERN SPECIES	2	FAM222A (ENSMODG00000004484)	TRPV4 (ENSMODG00000004471)	GLTP (ENSMODG00000004397)	ENSMODG00000004388	GIT2 (ENSMODG00000004362)	ANKRD13A (ENSMODG00000004303)	ENSMODG00000004252	SGSM1 (ENSMODG00000004182)	ENSMODG00000004127	ENSMODG00000017722	PPM1F (ENSMODG00000017715)	TOP3B (ENSMODG00000017702)	ENSMODG00000050920	SDF2L1 (ENSMODG00000041733)	ENSMODG00000017685	ENSMODG00000023523 #22	YDJC (ENSMODG00000017667)	ENSMODG00000017665	ENSMODG00000017663	HIC2 (ENSMODG00000017662)	ENSMODG00000050797	SERPIND1 (ENSMODG00000017654)	PI4KA (ENSMODG00000017648)	SNAP29 (ENSMODG00000017641)	ENSMODG00000017639	ENSMODG00000036805	AIFM3 (ENSMODG00000048268)	ENSMODG00000040543	THAP7 (ENSMODG00000044792)	ENSMODG00000023336	ENSMODG00000017606
Marsupialia	ANCESTRAL SPECIES																	ENSGT00390000011365.a.b #22
Marsupialia_b	ANCESTRAL SPECIES																	ENSGT00390000011365.a.b #22
Diprotodontia	ANCESTRAL SPECIES																	ENSGT00390000011365.a.b #22
Diprotodontia_a	ANCESTRAL SPECIES																	ENSGT00390000011365.a.b #22
koala	MODERN SPECIES	279												CSMD2 (ENSPCIG00000010397)	HMGB4 (ENSPCIG00000022796)	ENSPCIG00000010542	ENSPCIG00000034225	ENSPCIG00000036004 #22	ENSPCIG00000010781	ENSPCIG00000037315	MRPL17 (ENSPCIG00000010796)	DCHS1 (ENSPCIG00000026260)	TPP1 (ENSPCIG00000026275)	TAF10 (ENSPCIG00000026496)	ILK (ENSPCIG00000026497)	ENSPCIG00000037345	ENSPCIG00000010799	TIMM10B (ENSPCIG00000010803)	ARFIP2 (ENSPCIG00000010805)	TRIM3 (ENSPCIG00000010809)	HPX (ENSPCIG00000022928)	APBB1 (ENSPCIG00000022934)	SMPD1 (ENSPCIG00000022940)
Platypus	MODERN SPECIES	84	MYOZ3 (ENSOANG00000045135)	RBM22 (ENSOANG00000002314)	DCTN4 (ENSOANG00000002315)	SMIM3 (ENSOANG00000014588)	ENSOANG00000046389	TNIP1 (ENSOANG00000014585) #12	ANXA6 (ENSOANG00000006565) #13	ENSOANG00000009602	ENSOANG00000047207	GM2A (ENSOANG00000048316) #15	CCDC69 (ENSOANG00000047108) #14	SLC36A1 (ENSOANG00000005116) #18	FAT2 (ENSOANG00000005115) #19	SPARC (ENSOANG00000005112) #20	ENSOANG00000046840	G3BP1 (ENSOANG00000005110) #22	GLRA1 (ENSOANG00000005109) #23	NMUR2 (ENSOANG00000005108) #24	GRIA1 (ENSOANG00000005104) #25	FAM114A2 (ENSOANG00000005102) #26	MFAP3 (ENSOANG00000005101) #27	GALNT10 (ENSOANG00000005100) #28	SAP30L (ENSOANG00000005099) #29	HAND1 (ENSOANG00000005097) #30	LARP1 (ENSOANG00000005096) #31	ENSOANG00000049431	FAXDC2 (ENSOANG00000005095)	CNOT8 (ENSOANG00000005094) #32	GEMIN5 (ENSOANG00000005092) #33	ENSOANG00000005091 #34	SGCD (ENSOANG00000005090)
Sauria	ANCESTRAL SPECIES	17	ENSGT00390000009443	ENSGT00950000185412	ENSGT00940000165034	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00940000166827	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000156583 #18	ENSGT00940000165176	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00440000033329.a.a.a	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Archelosauria	ANCESTRAL SPECIES	15	ENSGT00390000006954	ENSGT00390000009443	ENSGT00950000185412	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00940000166827	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000156583 #18	ENSGT00940000165176	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00440000033329.a.a.a	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000185756	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34
Archosauria	ANCESTRAL SPECIES	17	ENSGT00390000002792	ENSGT00390000006954	ENSGT00390000009443	ENSGT00950000185412	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00940000166827	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00440000033329.a.a.a	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000185756	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34
Aves	ANCESTRAL SPECIES	15	ENSGT00950000183027.a.a	ENSGT00390000002792	ENSGT00390000006954	ENSGT00390000009443	ENSGT00950000185412	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00940000166827	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00440000033329.a.a.a	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Neognathae	ANCESTRAL SPECIES	14	ENSGT00950000183027.a.a	ENSGT00390000002792	ENSGT00390000006954	ENSGT00390000009443	ENSGT00950000185412	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00940000166827	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00440000033329.a.a.a	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00960000189391	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34
Galloanserae	ANCESTRAL SPECIES	14	ENSGT00950000183054.a.a.b	ENSGT00950000183027.a.a	ENSGT00390000002792	ENSGT00390000006954	ENSGT00390000009443	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00940000166827	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00440000033329.a.a.a	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00960000189391	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34
Phasianidae	ANCESTRAL SPECIES	14	ENSGT00950000183054.a.a.b	ENSGT00950000183027.a.a	ENSGT00390000002792	ENSGT00390000006954	ENSGT00390000009443	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00940000166827	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00440000033329.a.a.a	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00960000189391	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34
Japanese quail	MODERN SPECIES	4	SYNPO (ENSCJPG00005006809)	MYOZ3 (ENSCJPG00005006811)	RBM22 (ENSCJPG00005006830)	DCTN4 (ENSCJPG00005006837)	SMIM3 (ENSCJPG00005006960)	GPX3 (ENSCJPG00005006961) #11	TNIP1 (ENSCJPG00005006963) #12	ANXA6 (ENSCJPG00005006964) #13	ENSCJPG00005006968	CCDC69 (ENSCJPG00005007002) #14	GM2A (ENSCJPG00005007004) #15	SLC36A1 (ENSCJPG00005007005) #18	FAT2 (ENSCJPG00005007006) #19	SPARC (ENSCJPG00005007052) #20	ENSCJPG00005007054	G3BP1 (ENSCJPG00005007055) #22	GLRA1 (ENSCJPG00005007056) #23	NMUR2 (ENSCJPG00005007135) #24	GRIA1 (ENSCJPG00005007141) #25	ENSCJPG00005007196	FAM114A2 (ENSCJPG00005007198) #26	MFAP3 (ENSCJPG00005007199) #27	GALNT10 (ENSCJPG00005007200) #28	SAP30L (ENSCJPG00005007201) #29	HAND1 (ENSCJPG00005007202) #30	LARP1 (ENSCJPG00005007203) #31	ENSCJPG00005007204	FAXDC2 (ENSCJPG00005007205)	CNOT8 (ENSCJPG00005007206) #32	GEMIN5 (ENSCJPG00005007207) #33	MRPL22 (ENSCJPG00005007229) #34
Phasianidae_b	ANCESTRAL SPECIES	18	ENSGT00950000183054.a.a.b	ENSGT00950000183027.a.a	ENSGT00390000002792	ENSGT00390000006954	ENSGT00390000009443	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00940000166827	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00440000033329.a.a.a	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00960000189391	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34
Turkey	MODERN SPECIES	6	ENSMGAG00000005605 #34	GEMIN5 (ENSMGAG00000005618) #33	ENSMGAG00000005696 #31	ENSMGAG00000019404	ENSMGAG00000005690	GALNT10 (ENSMGAG00000005743) #28	ENSMGAG00000005799 #26	MFAP3 (ENSMGAG00000005793) #27	ENSMGAG00000005838	ENSMGAG00000016971 #25	ENSMGAG00000005850 #25	ENSMGAG00000017655 #25	ENSMGAG00000022543	ENSMGAG00000005947 #24	ENSMGAG00000005959 #23	ENSMGAG00000005963 #22	ENSMGAG00000006016	ENSMGAG00000006021 #20	ENSMGAG00000006079 #19	ENSMGAG00000006160 #18	ENSMGAG00000006203 #15	ENSMGAG00000006247	ENSMGAG00000018809	GPX3 (ENSMGAG00000006141) #11	ENSMGAG00000006480 #12	ANXA6 (ENSMGAG00000006334) #13	ENSMGAG00000019339	DCTN4 (ENSMGAG00000006209)	ENSMGAG00000006492	ENSMGAG00000006298	NDST1 (ENSMGAG00000006555)
Chicken	MODERN SPECIES	4	NDST1 (ENSGALG00010013387)	SYNPO (ENSGALG00010016699)	RBM22 (ENSGALG00010016683)	DCTN4 (ENSGALG00010016672)	SMIM3 (ENSGALG00010016654)	GPX3 (ENSGALG00010016480) #11	TNIP1 (ENSGALG00010016470) #12	ANXA6 (ENSGALG00010014824) #13	ENSGALG00010014719	CCDC69 (ENSGALG00010014769) #14	GM2A (ENSGALG00010017346) #15	SLC36A1 (ENSGALG00010014645) #18	FAT2 (ENSGALG00010014522) #19	SPARC (ENSGALG00010014390) #20	ENSGALG00010014319	G3BP1 (ENSGALG00010014278) #22	GLRA1 (ENSGALG00010014234) #23	NMUR2 (ENSGALG00010014224) #24	GRIA1 (ENSGALG00010016612) #25	ENSGALG00010016599	FAM114A2 (ENSGALG00010012898) #26	MFAP3 (ENSGALG00010012890) #27	GALNT10 (ENSGALG00010016768) #28	SAP30L (ENSGALG00010015845) #29	HAND1 (ENSGALG00010015835) #30	LARP1 (ENSGALG00010015796) #31	ENSGALG00010015721	FAXDC2 (ENSGALG00010015697)	CNOT8 (ENSGALG00010015686) #32	GEMIN5 (ENSGALG00010015580) #33	MRPL22 (ENSGALG00010015523) #34
Anatidae	ANCESTRAL SPECIES	15	ENSGT00940000157857	ENSGT00950000183054.a.a.b	ENSGT00950000183027.a.a	ENSGT00390000002792	ENSGT00390000006954	ENSGT00390000009443	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00440000033329.a.a.a	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00960000189391	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34
Duck	MODERN SPECIES	5	ENSAPLG00000019781	ENSAPLG00000015849	RPS14 (ENSAPLG00000013923)	NDST1 (ENSAPLG00000016141)	MYOZ3 (ENSAPLG00000016381)	RBM22 (ENSAPLG00000016408)	SYNPO (ENSAPLG00000024895)	GPX3 (ENSAPLG00000002355) #11	TNIP1 (ENSAPLG00000002442) #12	ANXA6 (ENSAPLG00000003352) #13	CCDC69 (ENSAPLG00000022330) #14	ENSAPLG00000004805 #15	FAT2 (ENSAPLG00000005340) #19	SPARC (ENSAPLG00000006120) #20	ENSAPLG00000017300	G3BP1 (ENSAPLG00000006581) #22	GLRA1 (ENSAPLG00000007106) #23	NMUR2 (ENSAPLG00000008762) #24	GRIA1 (ENSAPLG00000008617) #25	ENSAPLG00000008439	FAM114A2 (ENSAPLG00000008179) #26	MFAP3 (ENSAPLG00000018241) #27	GALNT10 (ENSAPLG00000007938) #28	SAP30L (ENSAPLG00000020905) #29	HAND1 (ENSAPLG00000019600) #30	LARP1 (ENSAPLG00000007559) #31	ENSAPLG00000021218	FAXDC2 (ENSAPLG00000007416)	CNOT8 (ENSAPLG00000007128) #32	GEMIN5 (ENSAPLG00000006816) #33	MRPL22 (ENSAPLG00000021380) #34
Pink-footed goose	MODERN SPECIES	9	NDST1 (ENSABRG00000017410)	SYNPO (ENSABRG00000017403)	MYOZ3 (ENSABRG00000017392)	RBM22 (ENSABRG00000017385)	DCTN4 (ENSABRG00000017383)	SMIM3 (ENSABRG00000017378)	GPX3 (ENSABRG00000017372) #11	TNIP1 (ENSABRG00000017360) #12	ANXA6 (ENSABRG00000017332) #13	CCDC69 (ENSABRG00000017318) #14	GM2A (ENSABRG00000017315) #15	SLC36A1 (ENSABRG00000017306) #18	FAT2 (ENSABRG00000017269) #19	SPARC (ENSABRG00000017258) #20	ENSABRG00000017251	G3BP1 (ENSABRG00000017248) #22	ENSABRG00000017242	GLRA1 (ENSABRG00000017237) #23	NMUR2 (ENSABRG00000017229) #24	GRIA1 (ENSABRG00000017183) #25	ENSABRG00000017175	FAM114A2 (ENSABRG00000017166) #26	MFAP3 (ENSABRG00000017160) #27	GALNT10 (ENSABRG00000017149) #28	SAP30L (ENSABRG00000017146) #29	HAND1 (ENSABRG00000017143) #30	LARP1 (ENSABRG00000017090) #31	ENSABRG00000017076	FAXDC2 (ENSABRG00000017073)	CNOT8 (ENSABRG00000017071) #32	GEMIN5 (ENSABRG00000016984) #33
Neognathae_b	ANCESTRAL SPECIES	16	ENSGT00950000183027.a.a	ENSGT00390000002792	ENSGT00390000006954	ENSGT00390000009443	ENSGT00950000185412	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00940000166827	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00440000033329.a.a.a	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00960000189391	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34
Neognathae_c	ANCESTRAL SPECIES	19	ENSGT00950000183027.a.a	ENSGT00390000002792	ENSGT00390000006954	ENSGT00390000009443	ENSGT00950000185412	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00940000166827	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00440000033329.a.a.a	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00960000189391	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34
Golden eagle	MODERN SPECIES	14	MYOZ3 (ENSACCG00020013815)	RBM22 (ENSACCG00020013795)	DCTN4 (ENSACCG00020013777)	SMIM3 (ENSACCG00020013753)	ENSACCG00020013747	GPX3 (ENSACCG00020013736) #11	TNIP1 (ENSACCG00020013704) #12	ANXA6 (ENSACCG00020013645) #13	ENSACCG00020013572	CCDC69 (ENSACCG00020013524) #14	GM2A (ENSACCG00020013517) #15	SLC36A1 (ENSACCG00020013502) #18	FAT2 (ENSACCG00020013376) #19	SPARC (ENSACCG00020013224) #20	ENSACCG00020013212	G3BP1 (ENSACCG00020013189) #22	GLRA1 (ENSACCG00020013157) #23	NMUR2 (ENSACCG00020013101) #24	GRIA1 (ENSACCG00020013073) #25	ENSACCG00020013039	FAM114A2 (ENSACCG00020013008) #26	MFAP3 (ENSACCG00020012992) #27	GALNT10 (ENSACCG00020012927) #28	SAP30L (ENSACCG00020012824) #29	HAND1 (ENSACCG00020012811) #30	LARP1 (ENSACCG00020012784) #31	ENSACCG00020012765	FAXDC2 (ENSACCG00020012743)	CNOT8 (ENSACCG00020012722) #32	GEMIN5 (ENSACCG00020012365) #33	MRPL22 (ENSACCG00020011922) #34
Kakapo	MODERN SPECIES	6	SYNPO (ENSSHBG00005007687)	MYOZ3 (ENSSHBG00005007697)	RBM22 (ENSSHBG00005007711)	DCTN4 (ENSSHBG00005007727)	SMIM3 (ENSSHBG00005007746)	ENSSHBG00005007755	GPX3 (ENSSHBG00005007768) #11	TNIP1 (ENSSHBG00005007792) #12	ANXA6 (ENSSHBG00005007855) #13	ENSSHBG00005007887	GM2A (ENSSHBG00005007946) #15	SLC36A1 (ENSSHBG00005007989) #18	FAT2 (ENSSHBG00005008032) #19	SPARC (ENSSHBG00005008175) #20	ENSSHBG00005008207	G3BP1 (ENSSHBG00005008216) #22	GLRA1 (ENSSHBG00005008245) #23	NMUR2 (ENSSHBG00005008295) #24	GRIA1 (ENSSHBG00005008317) #25	ENSSHBG00005008348	FAM114A2 (ENSSHBG00005008356) #26	MFAP3 (ENSSHBG00005008364) #27	GALNT10 (ENSSHBG00005008389) #28	SAP30L (ENSSHBG00005008866) #29	HAND1 (ENSSHBG00005008870) #30	LARP1 (ENSSHBG00005008881) #31	ENSSHBG00005008895	FAXDC2 (ENSSHBG00005008901)	CNOT8 (ENSSHBG00005008914) #32	GEMIN5 (ENSSHBG00005008928) #33	MRPL22 (ENSSHBG00005008944) #34
Passeriformes	ANCESTRAL SPECIES	14	ENSGT00950000183054.a.a.b	ENSGT00950000183027.a.a	ENSGT00390000002792	ENSGT00390000006954	ENSGT00390000009443	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00940000166827	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00440000033329.a.a.a	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00960000189391	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34
Passeriformes_d	ANCESTRAL SPECIES	15	ENSGT00950000183054.a.a.b	ENSGT00950000183027.a.a	ENSGT00390000002792	ENSGT00390000006954	ENSGT00390000009443	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00940000166827	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00440000033329.a.a.a	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00960000189391	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34
Flycatcher	MODERN SPECIES	4	RPS14 (ENSFALG00000025889)	ENSFALG00000008044	DCTN4 (ENSFALG00000008078)	SMIM3 (ENSFALG00000014369)	ENSFALG00000008089	ENSFALG00000008032	TNIP1 (ENSFALG00000008095) #12	ANXA6 (ENSFALG00000008115) #13	ENSFALG00000008156	CCDC69 (ENSFALG00000025974) #14	GM2A (ENSFALG00000008178) #15	SLC36A1 (ENSFALG00000008186) #18	FAT2 (ENSFALG00000008202) #19	SPARC (ENSFALG00000008238) #20	ENSFALG00000028160	G3BP1 (ENSFALG00000024655) #22	GLRA1 (ENSFALG00000008265) #23	NMUR2 (ENSFALG00000008268) #24	GRIA1 (ENSFALG00000008274) #25	ENSFALG00000008278	FAM114A2 (ENSFALG00000008288) #26	MFAP3 (ENSFALG00000024043) #27	GALNT10 (ENSFALG00000008313) #28	SAP30L (ENSFALG00000008321) #29	HAND1 (ENSFALG00000008331) #30	LARP1 (ENSFALG00000008335) #31	FAXDC2 (ENSFALG00000008340)	CNOT8 (ENSFALG00000008343) #32	GEMIN5 (ENSFALG00000008360) #33	MRPL22 (ENSFALG00000008367) #34	SGCD (ENSFALG00000008378)
Passeriformes_g	ANCESTRAL SPECIES	15	ENSGT00950000183054.a.a.b	ENSGT00950000183027.a.a	ENSGT00390000002792	ENSGT00390000006954	ENSGT00390000009443	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00940000166827	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00440000033329.a.a.a	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00960000189391	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34
Medium ground finch	MODERN SPECIES	11	ENSGFOG00000000198	MYOZ3 (ENSGFOG00000000204)	RBM22 (ENSGFOG00000000208)	DCTN4 (ENSGFOG00000000214)	SMIM3 (ENSGFOG00000000223)	ENSGFOG00000000228	TNIP1 (ENSGFOG00000000233) #12	ANXA6 (ENSGFOG00000000247) #13	ENSGFOG00000000286	CCDC69 (ENSGFOG00000000327) #14	GM2A (ENSGFOG00000000340) #15	SLC36A1 (ENSGFOG00000000348) #18	FAT2 (ENSGFOG00000000362) #19	SPARC (ENSGFOG00000000383) #20	ENSGFOG00000000393	G3BP1 (ENSGFOG00000000402) #22	GLRA1 (ENSGFOG00000000427) #23	NMUR2 (ENSGFOG00000000474) #24	GRIA1 (ENSGFOG00000000487) #25	ENSGFOG00000000509	FAM114A2 (ENSGFOG00000000521) #26	MFAP3 (ENSGFOG00000000531) #27	GALNT10 (ENSGFOG00000000586) #28	SAP30L (ENSGFOG00000000617) #29	HAND1 (ENSGFOG00000000622) #30	LARP1 (ENSGFOG00000000636) #31	ENSGFOG00000000668	ENSGFOG00000000672	FAXDC2 (ENSGFOG00000000676)	CNOT8 (ENSGFOG00000000685) #32	GEMIN5 (ENSGFOG00000000722) #33
Passeroidea	ANCESTRAL SPECIES	15	ENSGT00950000183054.a.a.b	ENSGT00950000183027.a.a	ENSGT00390000002792	ENSGT00390000006954	ENSGT00390000009443	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00940000166827	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00440000033329.a.a.a	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00960000189391	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34
Common canary	MODERN SPECIES	16	MYOZ3 (ENSSCAG00000011870)	RBM22 (ENSSCAG00000011882)	DCTN4 (ENSSCAG00000011892)	SMIM3 (ENSSCAG00000011901)	GPX3 (ENSSCAG00000011904) #11	TNIP1 (ENSSCAG00000011913) #12	ANXA6 (ENSSCAG00000011936) #13	ENSSCAG00000011954	CCDC69 (ENSSCAG00000011959) #14	GM2A (ENSSCAG00000011966) #15	SLC36A1 (ENSSCAG00000011968) #18	FAT2 (ENSSCAG00000011974) #19	SPARC (ENSSCAG00000011984) #20	ENSSCAG00000011987	ENSSCAG00000011991	G3BP1 (ENSSCAG00000011996) #22	GLRA1 (ENSSCAG00000012004) #23	GRIA1 (ENSSCAG00000012153) #25	ENSSCAG00000012711	ENSSCAG00000012715	FAM114A2 (ENSSCAG00000012723) #26	MFAP3 (ENSSCAG00000012732) #27	GALNT10 (ENSSCAG00000012752) #28	SAP30L (ENSSCAG00000012788) #29	ENSSCAG00000012793	LARP1 (ENSSCAG00000012799) #31	ENSSCAG00000012819	FAXDC2 (ENSSCAG00000012823)	CNOT8 (ENSSCAG00000012827) #32	GEMIN5 (ENSSCAG00000012857) #33	MRPL22 (ENSSCAG00000012965) #34
Zebra finch	MODERN SPECIES	4	NDST1 (ENSTGUG00000000871)	SYNPO (ENSTGUG00000000864)	MYOZ3 (ENSTGUG00000000861)	RBM22 (ENSTGUG00000000850)	DCTN4 (ENSTGUG00000000845)	SMIM3 (ENSTGUG00000028360)	TNIP1 (ENSTGUG00000000818) #12	ANXA6 (ENSTGUG00000000799) #13	ENSTGUG00000000794	CCDC69 (ENSTGUG00000000792) #14	GM2A (ENSTGUG00000000788) #15	SLC36A1 (ENSTGUG00000000782) #18	FAT2 (ENSTGUG00000000776) #19	SPARC (ENSTGUG00000000770) #20	ENSTGUG00000000767	G3BP1 (ENSTGUG00000000753) #22	ENSTGUG00000000749 #23	NMUR2 (ENSTGUG00000000747) #24	GRIA1 (ENSTGUG00000000726) #25	ENSTGUG00000000721	FAM114A2 (ENSTGUG00000000719) #26	MFAP3 (ENSTGUG00000026429) #27	GALNT10 (ENSTGUG00000000711) #28	SAP30L (ENSTGUG00000028020) #29	HAND1 (ENSTGUG00000029362) #30	LARP1 (ENSTGUG00000000704) #31	ENSTGUG00000018772	FAXDC2 (ENSTGUG00000000681)	CNOT8 (ENSTGUG00000000699) #32	GEMIN5 (ENSTGUG00000000688) #33	MRPL22 (ENSTGUG00000023797) #34
Great tit	MODERN SPECIES	4	RBM22 (ENSPMJG00000008107)	DCTN4 (ENSPMJG00000008104)	SMIM3 (ENSPMJG00000008103)	GPX3 (ENSPMJG00000008085) #11	TNIP1 (ENSPMJG00000008083) #12	ANXA6 (ENSPMJG00000008077) #13	ENSPMJG00000007873	CCDC69 (ENSPMJG00000007872) #14	GM2A (ENSPMJG00000007871) #15	SLC36A1 (ENSPMJG00000007870) #18	FAT2 (ENSPMJG00000007869) #19	ENSPMJG00000007868	ENSPMJG00000007867	SPARC (ENSPMJG00000007866) #20	ENSPMJG00000007865	G3BP1 (ENSPMJG00000007864) #22	GLRA1 (ENSPMJG00000007862) #23	NMUR2 (ENSPMJG00000007854) #24	GRIA1 (ENSPMJG00000007826) #25	ENSPMJG00000007815	FAM114A2 (ENSPMJG00000007809) #26	MFAP3 (ENSPMJG00000007808) #27	GALNT10 (ENSPMJG00000007807) #28	SAP30L (ENSPMJG00000007806) #29	HAND1 (ENSPMJG00000007805) #30	LARP1 (ENSPMJG00000007802) #31	ENSPMJG00000007801	FAXDC2 (ENSPMJG00000007794)	CNOT8 (ENSPMJG00000007792) #32	GEMIN5 (ENSPMJG00000007790) #33	MRPL22 (ENSPMJG00000007789) #34
African ostrich	MODERN SPECIES	997	PPARGC1B (ENSSCUG00000012755)	RPS14 (ENSSCUG00000012768)	NDST1 (ENSSCUG00000012770)	MYOZ3 (ENSSCUG00000012774)	RBM22 (ENSSCUG00000012776)	DCTN4 (ENSSCUG00000012786)	ENSSCUG00000012801	TNIP1 (ENSSCUG00000012804) #12	ANXA6 (ENSSCUG00000012813) #13	ENSSCUG00000012818	CCDC69 (ENSSCUG00000012820) #14	SLC36A1 (ENSSCUG00000012824) #18	FAT2 (ENSSCUG00000012826) #19	SPARC (ENSSCUG00000012835) #20	ENSSCUG00000012836	G3BP1 (ENSSCUG00000012837) #22	GLRA1 (ENSSCUG00000012841) #23	NMUR2 (ENSSCUG00000012843) #24	GRIA1 (ENSSCUG00000012847) #25	ENSSCUG00000012853	FAM114A2 (ENSSCUG00000012860) #26	MFAP3 (ENSSCUG00000012863) #27	GALNT10 (ENSSCUG00000012869) #28	SAP30L (ENSSCUG00000012872) #29	LARP1 (ENSSCUG00000012881) #31	FAXDC2 (ENSSCUG00000012904)	CNOT8 (ENSSCUG00000012907) #32	GEMIN5 (ENSSCUG00000012925) #33	MRPL22 (ENSSCUG00000012957) #34	SGCD (ENSSCUG00000012961)	ENSSCUG00000012967
Australian saltwater crocodile	MODERN SPECIES	34	MYOZ3 (ENSCPRG00005012609)	RBM22 (ENSCPRG00005012610)	DCTN4 (ENSCPRG00005012617)	SMIM3 (ENSCPRG00005012632)	GPX3 (ENSCPRG00005012636) #11	TNIP1 (ENSCPRG00005012646) #12	ANXA6 (ENSCPRG00005012657) #13	ENSCPRG00005012698	ENSCPRG00005012716	CCDC69 (ENSCPRG00005012720) #14	GM2A (ENSCPRG00005012728) #15	SLC36A1 (ENSCPRG00005012734) #18	FAT2 (ENSCPRG00005012749) #19	SPARC (ENSCPRG00005012780) #20	ENSCPRG00005012790	G3BP1 (ENSCPRG00005012799) #22	GLRA1 (ENSCPRG00005012827) #23	NMUR2 (ENSCPRG00005012849) #24	GRIA1 (ENSCPRG00005012861) #25	ENSCPRG00005012876	FAM114A2 (ENSCPRG00005012889) #26	MFAP3 (ENSCPRG00005012897) #27	GALNT10 (ENSCPRG00005012910) #28	LARP1 (ENSCPRG00005012960) #31	ENSCPRG00005013124	FAXDC2 (ENSCPRG00005013127)	CNOT8 (ENSCPRG00005013128) #32	GEMIN5 (ENSCPRG00005013133) #33	MRPL22 (ENSCPRG00005013174) #34	SGCD (ENSCPRG00005013196)	ENSCPRG00005013221
Cryptodira	ANCESTRAL SPECIES	15	ENSGT00390000002792	ENSGT00390000006954	ENSGT00390000009443	ENSGT00950000185412	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000156583 #18	ENSGT00940000165176	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00440000033329.a.a.a	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000185756	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34
Testudinoidea	ANCESTRAL SPECIES	5	ENSGT00390000002792	ENSGT00390000006954	ENSGT00390000009443	ENSGT00950000185412	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000156583 #18	ENSGT00940000165176	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00440000033329.a.a.a	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000185756	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34
Emydidae	ANCESTRAL SPECIES	11	ENSGT00390000002792	ENSGT00390000006954	ENSGT00390000009443	ENSGT00950000185412	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000156583 #18	ENSGT00940000165176	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00440000033329.a.a.a	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00950000185756	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34
Three-toed box turtle	MODERN SPECIES	306	MYOZ3 (ENSTMTG00000003399)	RBM22 (ENSTMTG00000003428)	DCTN4 (ENSTMTG00000003463)	SMIM3 (ENSTMTG00000003506)	GPX3 (ENSTMTG00000003546) #11	TNIP1 (ENSTMTG00000003667) #12	ENSTMTG00000003739 #13	ENSTMTG00000004013	CCDC69 (ENSTMTG00000004066) #14	GM2A (ENSTMTG00000004086) #15	SLC36A1 (ENSTMTG00000004108) #18	ENSTMTG00000004152	FAT2 (ENSTMTG00000004263) #19	SPARC (ENSTMTG00000004555) #20	ENSTMTG00000004577	G3BP1 (ENSTMTG00000004591) #22	GLRA1 (ENSTMTG00000004636) #23	NMUR2 (ENSTMTG00000004784) #24	GRIA1 (ENSTMTG00000004812) #25	ENSTMTG00000004873	FAM114A2 (ENSTMTG00000004900) #26	MFAP3 (ENSTMTG00000004933) #27	GALNT10 (ENSTMTG00000004958) #28	SAP30L (ENSTMTG00000005169) #29	HAND1 (ENSTMTG00000005179) #30	LARP1 (ENSTMTG00000005192) #31	ENSTMTG00000005229	FAXDC2 (ENSTMTG00000005244)	ENSTMTG00000005271	CNOT8 (ENSTMTG00000005295) #32	GEMIN5 (ENSTMTG00000005308) #33
painted turtle	MODERN SPECIES	17	RBM22 (ENSCPBG00000010094)	DCTN4 (ENSCPBG00000010099)	SMIM3 (ENSCPBG00000010107)	ENSCPBG00000010110	GPX3 (ENSCPBG00000010113) #11	TNIP1 (ENSCPBG00000010117) #12	ANXA6 (ENSCPBG00000010126) #13	ENSCPBG00000010140	CCDC69 (ENSCPBG00000010143) #14	GM2A (ENSCPBG00000010151) #15	SLC36A1 (ENSCPBG00000010154) #18	ENSCPBG00000010161	FAT2 (ENSCPBG00000010173) #19	SPARC (ENSCPBG00000010198) #20	ENSCPBG00000010201	G3BP1 (ENSCPBG00000010203) #22	GLRA1 (ENSCPBG00000010244) #23	ENSCPBG00000010247	NMUR2 (ENSCPBG00000010249) #24	ENSCPBG00000010252	ENSCPBG00000010256	ENSCPBG00000010259	DIAPH2 (ENSCPBG00000010370)	ENSCPBG00000014267	ENSCPBG00000014269	ENSCPBG00000014272	PCDH19 (ENSCPBG00000014278)	ENSCPBG00000014279	TNMD (ENSCPBG00000014280)	TSPAN6 (ENSCPBG00000014282)	SRPX2 (ENSCPBG00000014286)
Testudinidae	ANCESTRAL SPECIES	16	ENSGT00950000183054.a.a.b	ENSGT00950000183027.a.a	ENSGT00390000002792	ENSGT00390000006954	ENSGT00390000009443	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00390000017153.b	ENSGT00390000003288 #15	ENSGT00940000156583 #18	ENSGT00940000165176	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00440000033329.a.a.a	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Abingdon island giant tortoise	MODERN SPECIES	237	ENSCABG00000013070	MYOZ3 (ENSCABG00000013068)	RBM22 (ENSCABG00000013067)	DCTN4 (ENSCABG00000013065)	SMIM3 (ENSCABG00000013063)	GPX3 (ENSCABG00000013060) #11	TNIP1 (ENSCABG00000013054) #12	ANXA6 (ENSCABG00000013037) #13	ENSCABG00000012951	GM2A (ENSCABG00000012943) #15	SLC36A1 (ENSCABG00000012747) #18	ENSCABG00000012732	FAT2 (ENSCABG00000012713) #19	SPARC (ENSCABG00000012700) #20	ENSCABG00000012696	G3BP1 (ENSCABG00000012692) #22	GLRA1 (ENSCABG00000012683) #23	NMUR2 (ENSCABG00000012675) #24	GRIA1 (ENSCABG00000012657) #25	ENSCABG00000012646	FAM114A2 (ENSCABG00000012638) #26	MFAP3 (ENSCABG00000012633) #27
Goode s thornscrub tortoise	MODERN SPECIES	22	ENSGEVG00005014937	MYOZ3 (ENSGEVG00005014881)	RBM22 (ENSGEVG00005014857)	DCTN4 (ENSGEVG00005014776)	SMIM3 (ENSGEVG00005014738)	GPX3 (ENSGEVG00005014640) #11	TNIP1 (ENSGEVG00005014583) #12	ANXA6 (ENSGEVG00005014488) #13	ENSGEVG00005014297	GM2A (ENSGEVG00005014278) #15	SLC36A1 (ENSGEVG00005014249) #18	ENSGEVG00005014005	FAT2 (ENSGEVG00005013423) #19	SPARC (ENSGEVG00005013136) #20	ENSGEVG00005013078	G3BP1 (ENSGEVG00005013001) #22	GLRA1 (ENSGEVG00005012734) #23	NMUR2 (ENSGEVG00005012661) #24	GRIA1 (ENSGEVG00005012522) #25	ENSGEVG00005012483	FAM114A2 (ENSGEVG00005012430) #26	MFAP3 (ENSGEVG00005012393) #27	GALNT10 (ENSGEVG00005012367) #28	SAP30L (ENSGEVG00005012349) #29	HAND1 (ENSGEVG00005012315) #30	LARP1 (ENSGEVG00005012218) #31	ENSGEVG00005011918	FAXDC2 (ENSGEVG00005011842)	CNOT8 (ENSGEVG00005011803) #32	GEMIN5 (ENSGEVG00005011726) #33	MRPL22 (ENSGEVG00005011686) #34
Chinese turtle	MODERN SPECIES	2223	RBM22 (ENSPSIG00000012818)	ENSPSIG00000001287	DCTN4 (ENSPSIG00000015665)	SMIM3 (ENSPSIG00000000173)	GPX3 (ENSPSIG00000005754) #11	TNIP1 (ENSPSIG00000006078) #12	ANXA6 (ENSPSIG00000008983) #13	ENSPSIG00000014934	CCDC69 (ENSPSIG00000015221) #14	GM2A (ENSPSIG00000015341) #15	SLC36A1 (ENSPSIG00000015463) #18	ENSPSIG00000008066	FAT2 (ENSPSIG00000008111) #19	SPARC (ENSPSIG00000011115) #20	ENSPSIG00000014626	G3BP1 (ENSPSIG00000015000) #22	GLRA1 (ENSPSIG00000016350) #23	NMUR2 (ENSPSIG00000017257) #24	GRIA1 (ENSPSIG00000017385) #25	ENSPSIG00000018202	FAM114A2 (ENSPSIG00000003722) #26	MFAP3 (ENSPSIG00000003733) #27	GALNT10 (ENSPSIG00000003738) #28	SAP30L (ENSPSIG00000003841) #29	FAXDC2 (ENSPSIG00000003855)	CNOT8 (ENSPSIG00000003865) #32	GEMIN5 (ENSPSIG00000003898) #33	MRPL22 (ENSPSIG00000003917) #34	SGCD (ENSPSIG00000003964)	ENSPSIG00000003985	ENSPSIG00000004015
Lepidosauria	ANCESTRAL SPECIES	15	ENSGT00390000009443	ENSGT00950000185412	ENSGT00940000165034	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00940000166827	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000156583 #18	ENSGT00940000165176	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00440000033329.a.a.a	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Episquamata	ANCESTRAL SPECIES	4	ENSGT00390000006954	ENSGT00390000009443	ENSGT00950000185412	ENSGT00940000165034	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00940000166827	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000156583 #18	ENSGT00940000165176	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00440000033329.a.a.a	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT01040000244563	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34
Laterata	ANCESTRAL SPECIES	1	ENSGT00390000006954	ENSGT00390000009443	ENSGT00950000185412	ENSGT00940000161098	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00940000166827	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000156583 #18	ENSGT00940000165176	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00440000033329.a.a.a	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT01040000244563	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34
Common wall lizard	MODERN SPECIES	10	DCTN4 (ENSPMRG00000007112)	SMIM3 (ENSPMRG00000007147)	GPX6 (ENSPMRG00000007158)	TNIP1 (ENSPMRG00000007183) #12	ANXA6 (ENSPMRG00000007232) #13	ENSPMRG00000007343	ENSPMRG00000007368	CCDC69 (ENSPMRG00000007381) #14	GM2A (ENSPMRG00000007399) #15	SLC36A1 (ENSPMRG00000007417) #18	ENSPMRG00000007441	FAT2 (ENSPMRG00000007452) #19	ENSPMRG00000007473	SPARC (ENSPMRG00000007489) #20	ENSPMRG00000007527	G3BP1 (ENSPMRG00000007541) #22	GLRA1 (ENSPMRG00000007560) #23	NMUR2 (ENSPMRG00000007570) #24	GRIA1 (ENSPMRG00000007592) #25	ENSPMRG00000007633	ENSPMRG00000007647	FAM114A2 (ENSPMRG00000007654) #26	MFAP3 (ENSPMRG00000007659) #27	GALNT10 (ENSPMRG00000007662) #28	SAP30L (ENSPMRG00000007669) #29	HAND1 (ENSPMRG00000007673) #30	LARP1 (ENSPMRG00000007680) #31	FAXDC2 (ENSPMRG00000007690)	ENSPMRG00000007602	CNOT8 (ENSPMRG00000007605) #32	GEMIN5 (ENSPMRG00000007609) #33
Argentine black and white tegu	MODERN SPECIES	1	DCTN4 (ENSSMRG00000017013)	SMIM3 (ENSSMRG00000017012)	ENSSMRG00000017011	GPX6 (ENSSMRG00000017010)	TNIP1 (ENSSMRG00000017005) #12	ANXA6 (ENSSMRG00000016996) #13	ENSSMRG00000016982	ENSSMRG00000016981	CCDC69 (ENSSMRG00000016980) #14	GM2A (ENSSMRG00000016978) #15	SLC36A1 (ENSSMRG00000016977) #18	ENSSMRG00000016966	FAT2 (ENSSMRG00000015178) #19	SPARC (ENSSMRG00000015158) #20	ENSSMRG00000015156	G3BP1 (ENSSMRG00000015155) #22	GLRA1 (ENSSMRG00000015154) #23	ENSSMRG00000015152	NMUR2 (ENSSMRG00000015143) #24	GRIA1 (ENSSMRG00000015140) #25	ENSSMRG00000015135	FAM114A2 (ENSSMRG00000015129) #26	MFAP3 (ENSSMRG00000015128) #27	GALNT10 (ENSSMRG00000015126) #28	SAP30L (ENSSMRG00000015125) #29	HAND1 (ENSSMRG00000015124) #30	LARP1 (ENSSMRG00000015123) #31	ENSSMRG00000015122	FAXDC2 (ENSSMRG00000015121)	CNOT8 (ENSSMRG00000015120) #32	GEMIN5 (ENSSMRG00000015119) #33
Toxicofera	ANCESTRAL SPECIES	3	ENSGT00390000006954	ENSGT00390000009443	ENSGT00950000185412	ENSGT00940000165034	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00940000166827	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000156583 #18	ENSGT00940000165176	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00440000033329.a.a.a	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT01040000244563	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34
Elapidae	ANCESTRAL SPECIES	2	ENSGT00950000183027.a.a	ENSGT00390000002792	ENSGT00390000006954	ENSGT00390000009443	ENSGT00950000185412	ENSGT00940000165034	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00940000166827	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00440000033329.a.a.a	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509	ENSGT00940000163509.b
Elapidae_a	ANCESTRAL SPECIES	11	ENSGT00950000183027.a.a	ENSGT00390000002792	ENSGT00390000006954	ENSGT00390000009443	ENSGT00950000185412	ENSGT00940000165034	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00940000166827	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT00940000157342 #25	ENSGT00440000033329.a.a.a	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509	ENSGT00940000163509.b	ENSGT00940000154444.B
Acanthophiinae	ANCESTRAL SPECIES	12	ENSGT00950000183027.a.a	ENSGT00390000002792	ENSGT00390000006954	ENSGT00390000009443	ENSGT00950000185412	ENSGT00940000165034	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00940000166827	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT00940000157342 #25	ENSGT00440000033329.a.a.a	ENSGT00950000186047	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509	ENSGT00940000163509.b
Eastern brown snake	MODERN SPECIES	6	SYNPO (ENSPTXG00000013876)	MYOZ3 (ENSPTXG00000013879)	RBM22 (ENSPTXG00000013880)	DCTN4 (ENSPTXG00000013883)	SMIM3 (ENSPTXG00000013885)	ENSPTXG00000013889	TNIP1 (ENSPTXG00000013895) #12	ANXA6 (ENSPTXG00000013899) #13	ENSPTXG00000013910	CCDC69 (ENSPTXG00000013923) #14	GM2A (ENSPTXG00000013925) #15	SLC36A1 (ENSPTXG00000013926) #18	FAT2 (ENSPTXG00000013927) #19	SPARC (ENSPTXG00000013937) #20	ENSPTXG00000013938	G3BP1 (ENSPTXG00000013939) #22	GLRA1 (ENSPTXG00000013941) #23	GRIA1 (ENSPTXG00000013942) #25	ENSPTXG00000013943	ENSPTXG00000013944	FAM114A2 (ENSPTXG00000013945) #26	MFAP3 (ENSPTXG00000013946) #27	GALNT10 (ENSPTXG00000013947) #28	SAP30L (ENSPTXG00000013948) #29	HAND1 (ENSPTXG00000013949) #30	LARP1 (ENSPTXG00000013950) #31	CNOT8 (ENSPTXG00000013952) #32	GEMIN5 (ENSPTXG00000013953) #33	MRPL22 (ENSPTXG00000013999) #34	SGCD (ENSPTXG00000014000)	ENSPTXG00000014023
Mainland tiger snake	MODERN SPECIES	4	ENSNSUG00000017151	RBM22 (ENSNSUG00000017145)	ENSNSUG00000017144	SMIM3 (ENSNSUG00000017143)	ENSNSUG00000017142	ENSNSUG00000017141	TNIP1 (ENSNSUG00000017140) #12	ANXA6 (ENSNSUG00000016599) #13	ENSNSUG00000016597	ENSNSUG00000016596 #14	GM2A (ENSNSUG00000016595) #15	SLC36A1 (ENSNSUG00000016594) #18	FAT2 (ENSNSUG00000016590) #19	SPARC (ENSNSUG00000016589) #20	ENSNSUG00000016588	G3BP1 (ENSNSUG00000016587) #22	ENSNSUG00000016586	GLRA1 (ENSNSUG00000016585) #23	GRIA1 (ENSNSUG00000016583) #25	ENSNSUG00000016582	ENSNSUG00000016581	FAM114A2 (ENSNSUG00000016579) #26	MFAP3 (ENSNSUG00000016578) #27	GALNT10 (ENSNSUG00000016517) #28	SAP30L (ENSNSUG00000016516) #29	HAND1 (ENSNSUG00000016515) #30	LARP1 (ENSNSUG00000016466) #31	ENSNSUG00000016464	CNOT8 (ENSNSUG00000016461) #32	GEMIN5 (ENSNSUG00000016457) #33	MRPL22 (ENSNSUG00000016453) #34
Blue-lipped sea krait	MODERN SPECIES	6311																G3BP1 (ENSLLTG00000016357) #22
Indian cobra	MODERN SPECIES	1	RBM22 (ENSNNAG00000013595)	DCTN4 (ENSNNAG00000013571)	ENSNNAG00000013556	ENSNNAG00000013549	ENSNNAG00000013537	ENSNNAG00000013509	ENSNNAG00000013472	TNIP1 (ENSNNAG00000013343) #12	ANXA6 (ENSNNAG00000013222) #13	ENSNNAG00000013115	GM2A (ENSNNAG00000013095) #15	SLC36A1 (ENSNNAG00000013024) #18	FAT2 (ENSNNAG00000012968) #19	SPARC (ENSNNAG00000012919) #20	ENSNNAG00000012897	G3BP1 (ENSNNAG00000012865) #22	GLRA1 (ENSNNAG00000012833) #23	NMUR2 (ENSNNAG00000012803) #24	GRIA1 (ENSNNAG00000012721) #25	ENSNNAG00000012684	FAM114A2 (ENSNNAG00000012637) #26	MFAP3 (ENSNNAG00000012623) #27	GALNT10 (ENSNNAG00000012546) #28	SAP30L (ENSNNAG00000012474) #29	HAND1 (ENSNNAG00000012436) #30	LARP1 (ENSNNAG00000011214) #31	CNOT8 (ENSNNAG00000011094) #32	GEMIN5 (ENSNNAG00000009290) #33	MRPL22 (ENSNNAG00000009139) #34	ENSNNAG00000009113	ENSNNAG00000009098
Lizard	MODERN SPECIES	862															ENSACAG00000041768	G3BP1 (ENSACAG00000009792) #22	GLRA1 (ENSACAG00000009688) #23	NMUR2 (ENSACAG00000009683) #24	ENSACAG00000042516	GRIA1 (ENSACAG00000009406) #25	ENSACAG00000009354
tuatara	MODERN SPECIES	878	MYOZ3 (ENSSPUG00000003918)	RBM22 (ENSSPUG00000003986)	DCTN4 (ENSSPUG00000004008)	SMIM3 (ENSSPUG00000004023)	GPX3 (ENSSPUG00000004036) #11	TNIP1 (ENSSPUG00000004058) #12	ANXA6 (ENSSPUG00000004091) #13	ENSSPUG00000004165	CCDC69 (ENSSPUG00000004219) #14	GM2A (ENSSPUG00000004231) #15	SLC36A1 (ENSSPUG00000004241) #18	ENSSPUG00000004296	FAT2 (ENSSPUG00000004326) #19	SPARC (ENSSPUG00000004361) #20	ENSSPUG00000004381	G3BP1 (ENSSPUG00000004389) #22	GLRA1 (ENSSPUG00000004412) #23
Anura	ANCESTRAL SPECIES	54	ENSGT00390000006954	ENSGT00390000007586.b	ENSGT00950000185412	ENSGT00940000165034	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00940000166827	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000156583 #18	ENSGT00940000165176	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342 #25	ENSGT00440000033329.a.a.a	ENSGT00390000010054.a #26	ENSGT00390000011576.b #27	ENSGT00940000156690 #28	ENSGT00390000006633.a #29	ENSGT00940000161111 #30	ENSGT00940000159577 #31	ENSGT00940000157328.C	ENSGT00390000000080.a.b #32	ENSGT00620000088064 #33	ENSGT00390000002110 #34	ENSGT00940000158509
Frog	MODERN SPECIES	3	gemin5 (ENSXETG00000019404) #33	ccdc69 (ENSXETG00000019409) #14	gm2a (ENSXETG00000040972) #15	ENSXETG00000049352	ENSXETG00000040181 #15	ENSXETG00000042567	slc36a1 (ENSXETG00000019424) #18	ENSXETG00000046375	ENSXETG00000025361	ENSXETG00000048476	fat2 (ENSXETG00000039824) #19	ENSXETG00000044166	ENSXETG00000045811	sparc (ENSXETG00000010707) #20	atox1 (ENSXETG00000026565)	g3bp1 (ENSXETG00000010712) #22	ENSXETG00000047146	ckap4 (ENSXETG00000010716)	ENSXETG00000042459	ENSXETG00000043560	uhrf1bp1l (ENSXETG00000022694)	ENSXETG00000045817	anks1b (ENSXETG00000040826)	ENSXETG00000047275	ENSXETG00000044389	fabp6 (ENSXETG00000005714)	ttc1 (ENSXETG00000040681)	ENSXETG00000046834	pwwp2a (ENSXETG00000005717)	ENSXETG00000038015	ikbip (ENSXETG00000005720)
Leishan spiny toad	MODERN SPECIES	6	ANXA6 (ENSLLEG00000008652) #13	ENSLLEG00000009145	ENSLLEG00000009359	ENSLLEG00000009594	ENSLLEG00000009677	ENSLLEG00000010199	ENSLLEG00000010220	ENSLLEG00000010239	CCDC69 (ENSLLEG00000010300) #14	GM2A (ENSLLEG00000010438) #15	SLC36A1 (ENSLLEG00000010523) #18	ENSLLEG00000010730	FAT2 (ENSLLEG00000010770) #19	SPARC (ENSLLEG00000010969) #20	ENSLLEG00000011021	G3BP1 (ENSLLEG00000011072) #22	GLRA1 (ENSLLEG00000011169) #23	NMUR2 (ENSLLEG00000011543) #24	ENSLLEG00000011752	ENSLLEG00000004782	GRIA1 (ENSLLEG00000004832) #25	ENSLLEG00000004938	ENSLLEG00000004980	FAM114A2 (ENSLLEG00000004992) #26	MFAP3 (ENSLLEG00000005034) #27	ENSLLEG00000005043	ENSLLEG00000005058 #28	SAP30L (ENSLLEG00000005087) #29	HAND1 (ENSLLEG00000005115) #30	ENSLLEG00000005129	LARP1 (ENSLLEG00000005153) #31
Coelacanth	MODERN SPECIES	246	MYOZ3 (ENSLACG00000016775)	DCTN4 (ENSLACG00000016808)	ENSLACG00000016993	gpx3 (ENSLACG00000017032)	TNIP1 (ENSLACG00000017071) #12	ANXA6 (ENSLACG00000017217) #13	ENSLACG00000017344	ENSLACG00000017377	CCDC69 (ENSLACG00000017395) #14	GM2A (ENSLACG00000017468) #15	ENSLACG00000017499 #18	ENSLACG00000017631	ENSLACG00000017718 #19	SPARC (ENSLACG00000017878) #20	atox1 (ENSLACG00000017945)	G3BP1 (ENSLACG00000017962) #22	GLRA1 (ENSLACG00000017989) #23	NMUR2 (ENSLACG00000018237) #24	GRIA1 (ENSLACG00000018465) #25	ENSLACG00000018562	FAM114A2 (ENSLACG00000018578) #26	MFAP3 (ENSLACG00000018585) #27	GALNT10 (ENSLACG00000018628) #28	SAP30L (ENSLACG00000018656) #29	HAND1 (ENSLACG00000018666) #30	ENSLACG00000018686	LARP1 (ENSLACG00000018700) #31	FAXDC2 (ENSLACG00000018718)
Actinopterygii	ANCESTRAL SPECIES	30	ENSGT00940000155429.b	ENSGT00950000183054.a.a.b	ENSGT00390000006954	ENSGT00940000165034	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00940000164978	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT00940000159354	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00940000153322.B.d	ENSGT00940000158869	ENSGT00940000164810	ENSGT00530000063860.a	ENSGT00940000155437	ENSGT00390000015484.i	ENSGT01050000244840.A.b.a	ENSGT00940000157465	ENSGT00940000178460	ENSGT00940000158554	ENSGT00390000006124
Neopterygii	ANCESTRAL SPECIES	53	ENSGT00430000032979	ENSGT00950000183054.a.a.b	ENSGT00390000006954	ENSGT00940000165034	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00940000164978	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00940000153322.B.d.b	ENSGT00940000158869	ENSGT00940000164810	ENSGT00530000063860.a	ENSGT00940000155437	ENSGT00940000157465	ENSGT00940000178460	ENSGT00940000158554	ENSGT00390000006124	ENSGT00390000002781
Osteoglossocephalai	ANCESTRAL SPECIES	57									ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00980000198740	ENSGT00940000158869	ENSGT00940000164810	ENSGT00530000063860.a	ENSGT00940000155437	ENSGT00940000157743	ENSGT00940000153986.b.b	ENSGT00950000183059.a	ENSGT00390000008975	ENSGT00390000007552	ENSGT00940000165073.a.a
Clupeocephala	ANCESTRAL SPECIES	28	ENSGT00940000156471.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000159747	ENSGT00940000157712	ENSGT00980000203236	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00940000177647	ENSGT00510000048167.b.b	ENSGT00940000153899.a.a	ENSGT01030000235165	ENSGT00940000153322.B.d.a	ENSGT00390000017284.b	ENSGT00940000167363	ENSGT00940000158869	ENSGT00940000164810	ENSGT00530000063860.a	ENSGT00940000155437
Otomorpha	ANCESTRAL SPECIES	34	ENSGT00940000156471.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000159747	ENSGT00940000157712	ENSGT00980000203236	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00980000198740	ENSGT00940000177647	ENSGT00510000048167.b.b	ENSGT00940000153899.a.a	ENSGT01030000235165	ENSGT00940000153322.B.d.a	ENSGT00390000017284.b	ENSGT00940000167363	ENSGT00940000158869	ENSGT00940000164810	ENSGT00530000063860.a
Clupeiformes	ANCESTRAL SPECIES	37	ENSGT00940000156471.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000159747	ENSGT00940000157712	ENSGT00980000203236	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00940000155973.a	ENSGT00940000164374.B.c.a.c	ENSGT00940000159358	ENSGT00530000063113.C	ENSGT00940000159044	ENSGT00940000157079.a	ENSGT01100000263630	ENSGT00660000097471	ENSGT00940000160515	ENSGT00390000017980	ENSGT00940000158347.z
Atlantic herring	MODERN SPECIES	12	SHF (ENSCHAG00000019419)	ube2q1 (ENSCHAG00000019433)	CHRNB4 (ENSCHAG00000019648)	CHRNA3 (ENSCHAG00000019654)	tmed9 (ENSCHAG00000019777)	b4galt7 (ENSCHAG00000019837)	ENSCHAG00000019860	emx3 (ENSCHAG00000019874)	ENSCHAG00000019893 #14	gm2a (ENSCHAG00000019897) #15	FAT2 (ENSCHAG00000019916) #19	mtnr1al (ENSCHAG00000020755)	SLC36A1 (ENSCHAG00000020792) #18	atox1 (ENSCHAG00000020924)	sparc (ENSCHAG00000020940) #20	g3bp1 (ENSCHAG00000021109) #22	glra1 (ENSCHAG00000021171) #23	slc25a48 (ENSCHAG00000021600)	cplx2 (ENSCHAG00000021614)	ENSCHAG00000021665	thoc3 (ENSCHAG00000000607)	npy7r (ENSCHAG00000000679)	trim105 (ENSCHAG00000000709)	flt4 (ENSCHAG00000001387)	ergic1 (ENSCHAG00000004696)	dusp1 (ENSCHAG00000005209)	neurl1b (ENSCHAG00000005241)	spink2.1 (ENSCHAG00000005287)	mtnr1c (ENSCHAG00000005323)	vma21 (ENSCHAG00000005348)	ENSCHAG00000005384
Denticle herring	MODERN SPECIES	9	ENSDCDG00000033537	pde6a (ENSDCDG00000033541)	SLC26A2 (ENSDCDG00000033556)	HTR4 (ENSDCDG00000033559)	lman2 (ENSDCDG00000033561)	tmed9 (ENSDCDG00000033562)	b4galt7 (ENSDCDG00000033566)	emx3 (ENSDCDG00000033567)	ENSDCDG00000033569 #14	gm2a (ENSDCDG00000033571) #15	FAT2 (ENSDCDG00000033575) #19	mtnr1al (ENSDCDG00000033618)	SLC36A1 (ENSDCDG00000033621) #18	atox1 (ENSDCDG00000033625)	sparc (ENSDCDG00000033630) #20	g3bp1 (ENSDCDG00000033635) #22	glra1 (ENSDCDG00000033650) #23	slc25a48 (ENSDCDG00000033686)	cplx2 (ENSDCDG00000033689)	thoc3 (ENSDCDG00000033692)	npy7r (ENSDCDG00000033695)	trim105 (ENSDCDG00000033696)	flt4 (ENSDCDG00000033728)	ergic1 (ENSDCDG00000033887)	dusp1 (ENSDCDG00000033931)	neurl1b (ENSDCDG00000033933)	spink2.1 (ENSDCDG00000033936)	GPR50 (ENSDCDG00000033937)	ENSDCDG00000033939	ENSDCDG00000033941	ENSDCDG00000033943
Otophysi	ANCESTRAL SPECIES	43	ENSGT00940000155437	ENSGT00940000157743	ENSGT00940000153986.b.b	ENSGT00950000183059.a	ENSGT00940000158355	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00940000177647	ENSGT00510000048167.b.b	ENSGT00980000198740	ENSGT00940000153899.a.a	ENSGT01030000235165	ENSGT00940000153322.B.d.a	ENSGT00940000155983.a.a	ENSGT01100000263544.c.a.a.a	ENSGT00940000156471.b	ENSGT00950000183137.b.b	ENSGT00950000183088.a.a
Characiphysae	ANCESTRAL SPECIES	7	ENSGT00940000155437	ENSGT00940000157743	ENSGT00940000153986.b.b	ENSGT00950000183059.a	ENSGT00940000158355	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00940000177647	ENSGT00510000048167.b.b	ENSGT00940000153899.a.a	ENSGT01030000235165	ENSGT00940000153322.B.d.a	ENSGT00940000155983.a.a	ENSGT01100000263544.c.a.a.a	ENSGT00940000156471.b	ENSGT00950000183137.b.b	ENSGT00950000183088.a.a	ENSGT00940000159322
Characiphysae_b	ANCESTRAL SPECIES	7	ENSGT00940000155437	ENSGT00940000157743	ENSGT00940000153986.b.b	ENSGT00950000183059.a	ENSGT00940000158355	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00940000177647	ENSGT00510000048167.b.b	ENSGT00940000153899.a.a	ENSGT01030000235165	ENSGT00940000153322.B.d.a	ENSGT00940000155983.a.a	ENSGT01100000263544.c.a.a.a	ENSGT00940000156471.b	ENSGT00950000183137.b.b	ENSGT00950000183088.a.a	ENSGT00940000159322
Characoidei	ANCESTRAL SPECIES	2	ENSGT00940000155437	ENSGT00940000157743	ENSGT00940000153986.b.b	ENSGT00950000183059.a	ENSGT00940000158355	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00940000177647	ENSGT00510000048167.b.b	ENSGT00940000153899.a.a	ENSGT01030000235165	ENSGT00940000153322.B.d.a	ENSGT00940000155983.a.a	ENSGT01100000263544.c.a.a.a	ENSGT00940000156471.b	ENSGT00950000183137.b.b	ENSGT00950000183088.a.a	ENSGT00940000159322
Red-bellied piranha	MODERN SPECIES	14	smad5 (ENSPNAG00000025079)	syvn1 (ENSPNAG00000003864)	gpr137 (ENSPNAG00000025039)	ENSPNAG00000025026	lman2 (ENSPNAG00000006253)	tmed9 (ENSPNAG00000024939)	b4galt7 (ENSPNAG00000024930)	emx3 (ENSPNAG00000007051)	ENSPNAG00000006096 #14	gm2a (ENSPNAG00000024828) #15	FAT2 (ENSPNAG00000007050) #19	mtnr1al (ENSPNAG00000024675)	ENSPNAG00000024665 #18	atox1 (ENSPNAG00000024625)	sparc (ENSPNAG00000024599) #20	g3bp1 (ENSPNAG00000024583) #22	glra1 (ENSPNAG00000024478) #23	slc25a48 (ENSPNAG00000024397)	cplx2 (ENSPNAG00000024357)	thoc3 (ENSPNAG00000005252)	ENSPNAG00000024308	ENSPNAG00000024298	tmem216 (ENSPNAG00000024234)	ENSPNAG00000024218	ENSPNAG00000024173	HTR4 (ENSPNAG00000024109)	SLC26A2 (ENSPNAG00000024034)	pde6a (ENSPNAG00000024013)	ENSPNAG00000023871	ARHGEF37 (ENSPNAG00000023761)	slit3 (ENSPNAG00000023714)
Mexicana tetra	MODERN SPECIES	16	syvn1 (ENSAMXG00000003339)	gpr137 (ENSAMXG00000029581)	ENSAMXG00000010972	lman2 (ENSAMXG00000029169)	ENSAMXG00000043673	tmed9 (ENSAMXG00000010940)	b4galt7 (ENSAMXG00000010933)	emx3 (ENSAMXG00000043171)	ENSAMXG00000031561 #14	gm2a (ENSAMXG00000029373) #15	FAT2 (ENSAMXG00000010901) #19	mtnr1al (ENSAMXG00000010894)	SLC36A1 (ENSAMXG00000010886) #18	atox1 (ENSAMXG00000033464)	sparc (ENSAMXG00000029677) #20	g3bp1 (ENSAMXG00000010833) #22	glra1 (ENSAMXG00000042508) #23	slc25a48 (ENSAMXG00000039070)	cplx2 (ENSAMXG00000010761)	thoc3 (ENSAMXG00000010750)	ENSAMXG00000010728	tmem216 (ENSAMXG00000010702)	ENSAMXG00000010685	ENSAMXG00000010682	ENSAMXG00000010681	ENSAMXG00000029033	HTR4 (ENSAMXG00000031787)	SLC26A2 (ENSAMXG00000040557)	pde6a (ENSAMXG00000010673)	ENSAMXG00000010665	ARHGEF37 (ENSAMXG00000010660)
Electric eel	MODERN SPECIES	70	syvn1 (ENSEEEG00000014663)	gpr137 (ENSEEEG00000014660)	ENSEEEG00000014655	lman2 (ENSEEEG00000014650)	tmed9 (ENSEEEG00000014647)	b4galt7 (ENSEEEG00000014644)	emx3 (ENSEEEG00000014643)	ENSEEEG00000014641 #14	gm2a (ENSEEEG00000014640) #15	FAT2 (ENSEEEG00000014621) #19	mtnr1al (ENSEEEG00000014617)	ENSEEEG00000014616	SLC36A1 (ENSEEEG00000014375) #18	atox1 (ENSEEEG00000014358)	sparc (ENSEEEG00000014307) #20	g3bp1 (ENSEEEG00000014297) #22	glra1 (ENSEEEG00000014294) #23	slc25a48 (ENSEEEG00000014291)	cplx2 (ENSEEEG00000014289)	thoc3 (ENSEEEG00000014288)	ENSEEEG00000014285	ENSEEEG00000014282	ENSEEEG00000014280	ENSEEEG00000014274	tmem216 (ENSEEEG00000014270)	HTR4 (ENSEEEG00000014266)	SLC26A2 (ENSEEEG00000014256)	pde6a (ENSEEEG00000014228)	ENSEEEG00000014222	ARHGEF37 (ENSEEEG00000014219)	slit3 (ENSEEEG00000014211)
Channel catfish	MODERN SPECIES	27	ENSIPUG00000000877	lman2 (ENSIPUG00000000893)	tmed9 (ENSIPUG00000000938)	b4galt7 (ENSIPUG00000000943)	ENSIPUG00000000995	emx1 (ENSIPUG00000000998)	ccdc69 (ENSIPUG00000001017) #14	Gm2a (ENSIPUG00000001028) #15	fat2 (ENSIPUG00000001036) #19	ENSIPUG00000001065	ENSIPUG00000001068	mtnr1al (ENSIPUG00000001076)	SLC36A1 (ENSIPUG00000001090) #18	atox1 (ENSIPUG00000001118)	sparc (ENSIPUG00000001149) #20	G3BP (ENSIPUG00000001190) #22	glra1 (ENSIPUG00000001240) #23	slc25a48 (ENSIPUG00000001259)	cplx2 (ENSIPUG00000001281)	thoc3 (ENSIPUG00000001292)	ENSIPUG00000001315	ENSIPUG00000001321	tmem216 (ENSIPUG00000001353)	ENSIPUG00000001366	HTR4 (ENSIPUG00000001401)	slc26a2 (ENSIPUG00000001460)	PDE6A (ENSIPUG00000001474)	Ppargc1b (ENSIPUG00000001584)	arhgef37 (ENSIPUG00000001613)	slit3 (ENSIPUG00000001656)	cxcl14 (ENSIPUG00000001869)
Cyprinoidei	ANCESTRAL SPECIES	9	ENSGT00940000153986.b.b	ENSGT00950000183059.a	ENSGT00940000158355	ENSGT00940000159747.eb.a	ENSGT00940000159747.eb.b	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288.t #15	ENSGT00390000003288.s #15	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000156471.b.h	ENSGT00950000183137.b.b	ENSGT00950000183088.a.a	ENSGT00940000159322	ENSGT00390000000618.d	ENSGT00950000183033.a.b.b	ENSGT00940000157891	ENSGT00940000154808.a.b.j.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	604				ENSGT00950000183059.a.d	ENSGT00940000158355.f	ENSGT00940000159747.eb.a	ENSGT00940000157712.l	ENSGT00940000157425.A.b	ENSGT00950000183026.A.a.b.b #14	ENSGT00390000003288.s.a.b #15	ENSGT00940000158507.c #19	ENSGT00940000165176.b	ENSGT00940000156583.k #18	ENSGT00940000163780.s.b	ENSGT00510000046787.e.b.i #20	ENSGT00390000011365.a.ic #22	ENSGT00940000159047.d.b #23	ENSGT00940000159354.b	ENSGT00950000182938.b.b.a.f	ENSGT00510000048167.b.b.b
Goldfish	MODERN SPECIES	32	smad5 (ENSCARG00000055822)	syvn1 (ENSCARG00000055876)	gpr137 (ENSCARG00000055956)	ENSCARG00000055982	lman2 (ENSCARG00000056024)	tmed9 (ENSCARG00000056412)	b4galt7 (ENSCARG00000056461)	emx3 (ENSCARG00000056500)	ENSCARG00000056521 #14	ENSCARG00000056548	FAT2 (ENSCARG00000056639) #19	mtnr1al (ENSCARG00000056835)	SLC36A1 (ENSCARG00000056866) #18	atox1 (ENSCARG00000057609)	sparc (ENSCARG00000057630) #20	g3bp1 (ENSCARG00000057707) #22	glra1 (ENSCARG00000057880) #23	slc25a48 (ENSCARG00000058076)	cplx2 (ENSCARG00000058129)	ENSCARG00000058150	ENSCARG00000058170	slit3 (ENSCARG00000058217)	CXCL14 (ENSCARG00000058412)	fam13b (ENSCARG00000058522)	KLHL3 (ENSCARG00000058914)	ENSCARG00000059629	dpf2l (ENSCARG00000059652)	CHRM1 (ENSCARG00000060139)	nkx2.5 (ENSCARG00000060156)	stc2a (ENSCARG00000060172)	cpeb4a (ENSCARG00000060205)
Cyprininae_a	ANCESTRAL SPECIES	561									ENSGT00950000183026.A.a.b.b #14	ENSGT00390000003288.s.a.b #15	ENSGT00940000158507.c #19	ENSGT00940000165176.b	ENSGT00940000156583.k #18	ENSGT00940000163780.s.b	ENSGT00510000046787.e.b.i #20	ENSGT00390000011365.a.ic #22	ENSGT00940000159047.d.a #23	ENSGT00940000159354.a	ENSGT00950000182938.b.b.a.e	ENSGT00940000166119
Common carp reference	MODERN SPECIES	20	smad5 (ENSCCRG00000006190)	syvn1 (ENSCCRG00000022570)	gpr137 (ENSCCRG00000063404)	ENSCCRG00000039346	lman2 (ENSCCRG00000056551)	tmed9 (ENSCCRG00000001604)	b4galt7 (ENSCCRG00000073337)	emx3 (ENSCCRG00000082787)	gm2a (ENSCCRG00000076179) #15	ENSCCRG00000072739 #14	ENSCCRG00000049734 #19	mtnr1al (ENSCCRG00000081175)	ENSCCRG00000028228 #18	atox1 (ENSCCRG00000028230)	sparc (ENSCCRG00000035673) #20	g3bp1 (ENSCCRG00000036348) #22	glra1 (ENSCCRG00000073290) #23	slc25a48 (ENSCCRG00000007904)	cplx2 (ENSCCRG00000069670)	thoc3 (ENSCCRG00000038043)	ENSCCRG00000038255	ENSCCRG00000069703	ENSCCRG00000057818	ENSCCRG00000062068	ENSCCRG00000062998	tmem216 (ENSCCRG00000005459)	pde6a (ENSCCRG00000005589)	ENSCCRG00000017374	ENSCCRG00000010390	slit3 (ENSCCRG00000060113)	cxcl14 (ENSCCRG00000053197)
Golden-line barbel	MODERN SPECIES	249	ENSSGRG00000020035	ENSSGRG00000020036	syvn1 (ENSSGRG00000020042)	gpr137 (ENSSGRG00000020071)	ENSSGRG00000020076	ENSSGRG00000020221	tmed9 (ENSSGRG00000020222)	b4galt7 (ENSSGRG00000020223)	emx3 (ENSSGRG00000020227)	ENSSGRG00000020234 #14	FAT2 (ENSSGRG00000020240) #19	mtnr1al (ENSSGRG00000020291)	ENSSGRG00000020293 #18	atox1 (ENSSGRG00000020298)	sparc (ENSSGRG00000020328) #20	g3bp1 (ENSSGRG00000020403) #22	glra1 (ENSSGRG00000020404) #23	slc25a48 (ENSSGRG00000020411)	cplx2 (ENSSGRG00000020412)	cplx2 (ENSSGRG00000020414)	thoc3 (ENSSGRG00000020416)	ENSSGRG00000020417	SLC26A2 (ENSSGRG00000020418)	HTR4 (ENSSGRG00000020419)	ENSSGRG00000020423	ENSSGRG00000020424	ENSSGRG00000020426	tmem216 (ENSSGRG00000020427)	pde6a (ENSSGRG00000020428)	ENSSGRG00000020645	ENSSGRG00000020647
Cyprininae	ANCESTRAL SPECIES	79	ENSGT00940000157743.o	ENSGT00940000153986.b.b.b	ENSGT00950000183059.a.c	ENSGT00940000158355.e	ENSGT00940000159747.eb.b.a	ENSGT00940000157712.k	ENSGT00940000157425.A.a	ENSGT00950000183026.A.a.b.a #14	ENSGT00390000003288.t #15	ENSGT00390000003288.s.a.a #15	ENSGT00940000158507.d #19	ENSGT00940000165176.a	ENSGT00940000156583.l #18	ENSGT00940000163780.s.a	ENSGT00510000046787.e.b.j #20	ENSGT00390000011365.a.jc #22	ENSGT00940000159047.d.a #23	ENSGT00940000159354.a	ENSGT00950000182938.b.b.a.e	ENSGT00940000166119	ENSGT00940000158129	ENSGT00510000048167.b.b.a	ENSGT01100000263544.c.a.a.a.b	ENSGT00940000155983.a.a.d	ENSGT00940000153322.B.d.a.t	ENSGT01030000235165.a	ENSGT00950000183137.b.b.d	ENSGT00950000183088.a.a	ENSGT00940000159322.e	ENSGT00390000000618.c	ENSGT00950000183033.a.b.b.c
Goldfish	MODERN SPECIES	5	syvn1 (ENSCARG00000004758)	gpr137 (ENSCARG00000004784)	ENSCARG00000004803	lman2 (ENSCARG00000004838)	TMED9 (ENSCARG00000005242)	b4galt7 (ENSCARG00000005267)	emx3 (ENSCARG00000005275)	ENSCARG00000005283 #14	ENSCARG00000005291 #15	gm2a (ENSCARG00000005297) #15	FAT2 (ENSCARG00000005329) #19	mtnr1al (ENSCARG00000005394)	SLC36A1 (ENSCARG00000005412) #18	atox1 (ENSCARG00000005458)	sparc (ENSCARG00000005487) #20	g3bp1 (ENSCARG00000005647) #22	glra1 (ENSCARG00000005710) #23	slc25a48 (ENSCARG00000006045)	slc25a48 (ENSCARG00000006051)	cplx2 (ENSCARG00000006070)	thoc3 (ENSCARG00000006099)	ENSCARG00000006164	SLC26A2 (ENSCARG00000006251)	HTR4 (ENSCARG00000006270)	ENSCARG00000006303	ENSCARG00000006342	ENSCARG00000006371	ENSCARG00000006385	ENSCARG00000006435	slit3 (ENSCARG00000006589)	CXCL14 (ENSCARG00000007898)
Cyprininae_a	ANCESTRAL SPECIES	104	ENSGT00940000155437.ib.a	ENSGT00940000157743.o	ENSGT00940000153986.b.b.b	ENSGT00950000183059.a.c	ENSGT00940000158355.e	ENSGT00940000159747.eb.b.a	ENSGT00940000157712.k	ENSGT00940000157425.A.a	ENSGT00950000183026.A.a.b.a #14	ENSGT00390000003288.s.a.a #15	ENSGT00940000158507.d #19	ENSGT00940000165176.a	ENSGT00940000156583.l #18	ENSGT00940000163780.s.a	ENSGT00510000046787.e.b.j #20	ENSGT00390000011365.a.jc #22	ENSGT00940000159047.d.b #23	ENSGT00940000159354.b	ENSGT00950000182938.b.b.a.f	ENSGT00940000158129	ENSGT00510000048167.b.b.b	ENSGT00510000048167.b.b.a	ENSGT01100000263544.c.a.a.a.b	ENSGT00940000155983.a.a.d	ENSGT00940000153322.B.d.a.t	ENSGT01030000235165.a	ENSGT00950000183137.b.b.d	ENSGT00950000183088.a.a.e	ENSGT00940000159322.e	ENSGT00390000000618.c	ENSGT00950000183033.a.b.b.c
Common carp reference	MODERN SPECIES	35	smad5 (ENSCCRG00000081851)	syvn1 (ENSCCRG00000028362)	gpr137 (ENSCCRG00000022573)	ENSCCRG00000028346	lman2 (ENSCCRG00000001683)	ENSCCRG00000053896	b4galt7 (ENSCCRG00000001570)	emx3 (ENSCCRG00000067039)	ENSCCRG00000042862 #14	gm2a (ENSCCRG00000042859) #15	ENSCCRG00000026071 #19	mtnr1al (ENSCCRG00000035616)	ENSCCRG00000035625 #18	atox1 (ENSCCRG00000035645)	sparc (ENSCCRG00000059331) #20	g3bp1 (ENSCCRG00000076121) #22	glra1 (ENSCCRG00000036510) #23	slc25a48 (ENSCCRG00000038006)	cplx2 (ENSCCRG00000075510)	ENSCCRG00000075181	ENSCCRG00000075289	ENSCCRG00000059770	ENSCCRG00000050917	ENSCCRG00000005437	ENSCCRG00000010355	ENSCCRG00000010365	ENSCCRG00000010399	slit3 (ENSCCRG00000062711)	ENSCCRG00000061370	fam13b (ENSCCRG00000007416)	ENSCCRG00000040735
Golden-line barbel	MODERN SPECIES	1130												ENSSGRG00000037272 #14	FAT2 (ENSSGRG00000037270) #19	SLC36A1 (ENSSGRG00000037267) #18	sparc (ENSSGRG00000037201) #20	g3bp1 (ENSSGRG00000037198) #22	glra1 (ENSSGRG00000037189) #23
Zebrafish	MODERN SPECIES	5	gpr137 (ENSDARG00000037244)	ENSDARG00000061845	lman2 (ENSDARG00000061854)	tmed9 (ENSDARG00000004261)	pimr212 (ENSDARG00000037246)	b4galt7 (ENSDARG00000021899)	emx3 (ENSDARG00000020417)	ENSDARG00000111091 #14	GM2A (ENSDARG00000107431) #15	gm2a (ENSDARG00000088439) #15	FAT2 (ENSDARG00000018923) #19	mtnr1al (ENSDARG00000012057)	SLC36A1 (ENSDARG00000075618) #18	atox1 (ENSDARG00000087693)	sparc (ENSDARG00000019353) #20	g3bp1 (ENSDARG00000017741) #22	glra1 (ENSDARG00000012019) #23	slc25a48 (ENSDARG00000021250)	cplx2 (ENSDARG00000061918)	thoc3 (ENSDARG00000056517)	ENSDARG00000056519	SLC26A2 (ENSDARG00000011618)	HTR4 (ENSDARG00000061940)	ENSDARG00000099345	ENSDARG00000000394	ENSDARG00000001162	tmem216 (ENSDARG00000091576)	pde6a (ENSDARG00000000380)	ENSDARG00000101569	ENSDARG00000002463	slit3 (ENSDARG00000034268)
Euteleosteomorpha	ANCESTRAL SPECIES	9	ENSGT00940000156471.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000159747	ENSGT00940000157712	ENSGT00980000203236	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00940000177647	ENSGT00510000048167.b.b	ENSGT00940000153899.a.a	ENSGT01030000235165
Acanthomorphata	ANCESTRAL SPECIES	214											ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00940000177647	ENSGT00510000048167.b.b	ENSGT00940000158355	ENSGT00940000155983.a.a	ENSGT01100000263544.c.a.a.a	ENSGT00940000156471.b	ENSGT00950000183137.b.b	ENSGT00950000183088.a.a
Euacanthomorphacea	ANCESTRAL SPECIES	10	ENSGT00950000182938.b.b.b.a.b.b	ENSGT01020000231038	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00940000177647	ENSGT00510000048167.b.b
Percomorphaceae	ANCESTRAL SPECIES	11	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00980000198740	ENSGT00390000003288 #15	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00970000197534
Tiger tail seahorse	MODERN SPECIES	181	htr2cl1 (ENSHCOG00000002965)	zgc:109889 (ENSHCOG00000003025)	ENSHCOG00000003061	NFKB1 (ENSHCOG00000003095)	DGKQ (ENSHCOG00000003297)	mgat4b (ENSHCOG00000003347)	canx (ENSHCOG00000003371)	MAML1 (ENSHCOG00000003375)	LTC4S (ENSHCOG00000003387)	ENSHCOG00000003416	emx3 (ENSHCOG00000000103)	b4galt7 (ENSHCOG00000003445)	tmed9 (ENSHCOG00000003452)	tmem216 (ENSHCOG00000003458)	sparc (ENSHCOG00000003466) #20	g3bp1 (ENSHCOG00000003474) #22	glra1 (ENSHCOG00000003488) #23	slc25a48 (ENSHCOG00000003494)	cplx2 (ENSHCOG00000003503)	thoc3 (ENSHCOG00000003522)	ENSHCOG00000003546	gm2a (ENSHCOG00000003555) #15	PCDH12 (ENSHCOG00000003567)	PCDH1 (ENSHCOG00000003586)	atox1 (ENSHCOG00000003601)	mbnl3 (ENSHCOG00000003609)	rap2c (ENSHCOG00000000689)	zgc:92907 (ENSHCOG00000003628)	ENSHCOG00000003697	FOXO4 (ENSHCOG00000003716)	ubl3b (ENSHCOG00000003732)
Percomorphaceae_B	ANCESTRAL SPECIES	14	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00940000177647	ENSGT00510000048167.b.b	ENSGT00390000003288 #15	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #14	ENSGT00940000160738
Ovalentaria	ANCESTRAL SPECIES	15	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00940000177647	ENSGT00510000048167.b.b	ENSGT00390000003288 #15	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #14	ENSGT00940000160738
Atherinomorphae	ANCESTRAL SPECIES	9	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00390000003288 #15	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #14	ENSGT00940000160738	ENSGT00950000183201.b.b.b.a
Cyprinodontiformes	ANCESTRAL SPECIES	8	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00390000003288 #15	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #14	ENSGT00940000160738	ENSGT00950000183201.b.b.b.a
Aplocheiloidei	ANCESTRAL SPECIES	13	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00390000003288 #15	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00950000183026.A.a.b #14	ENSGT00940000160738	ENSGT00950000183201.b.b.b.a	ENSGT00950000182915.a.a.a	ENSGT00940000156526.a	ENSGT00940000158625
Mangrove rivulus	MODERN SPECIES	126	SMU1 (ENSKMAG00000003389)	CPXM1 (ENSKMAG00000003199)	ELP1 (ENSKMAG00000003085)	ARHGEF37 (ENSKMAG00000003012)	ENSKMAG00000003000	pde6a (ENSKMAG00000002895)	SLC26A2 (ENSKMAG00000002858)	HTR4 (ENSKMAG00000002836)	lman2 (ENSKMAG00000002789)	ENSKMAG00000002772	FAT2 (ENSKMAG00000002653) #19	mtnr1al (ENSKMAG00000002623)	SLC36A1 (ENSKMAG00000002610) #18	atox1 (ENSKMAG00000002592)	sparc (ENSKMAG00000002580) #20	g3bp1 (ENSKMAG00000002530) #22	glra1 (ENSKMAG00000002468) #23
Turquoise killifish	MODERN SPECIES	1610	SMU1 (ENSNFUG00015003412)	CU469518.1 (ENSNFUG00015003444)	IKBKAP (ENSNFUG00015003549)	PPARGC1B (ENSNFUG00015003601)	ENSNFUG00015003658	SLC26A2 (ENSNFUG00015003850)	ENSNFUG00015003852	ENSNFUG00015003857	ENSNFUG00015003868	HTR4 (ENSNFUG00015000208)	ENSNFUG00015000309 #19	mtnr1al (ENSNFUG00015000375)	SLC36A1 (ENSNFUG00015000398) #18	ENSNFUG00015000428	sparc (ENSNFUG00015000443) #20	G3BP1 (ENSNFUG00015000475) #22	glra1 (ENSNFUG00015000524) #23	ENSNFUG00015000567	ENSNFUG00015000569	ENSNFUG00015000575	ENSNFUG00015000582	thoc3 (ENSNFUG00015000586)	BX511257.1 (ENSNFUG00015000605)	GM2A (ENSNFUG00015000629) #15	PCDH12 (ENSNFUG00015000634)	ENSNFUG00015000640	ENSNFUG00015000647	ENSNFUG00015000654	PCDH1B (ENSNFUG00015000656)	ENSNFUG00015000666	ENSNFUG00015000670
Cyprinodontoidei	ANCESTRAL SPECIES	23	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT01100000263513.a.a.b.b.b.b.a.a.b.a.d	ENSGT00950000183071.a.b	ENSGT00950000182897.B.a.b.a	ENSGT00940000157245	ENSGT00510000047493	ENSGT00950000183168.C	ENSGT00940000159334	ENSGT00390000004952.a.b	ENSGT00390000000155.a.b	ENSGT00950000183000.c.a.a	ENSGT00940000158566	ENSGT00940000166209	ENSGT00390000009423.a
Poeciliinae	ANCESTRAL SPECIES	11	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT01100000263513.a.a.b.b.b.b.a.a.b.a.d	ENSGT00950000183071.a.b	ENSGT00950000182897.B.a.b.a	ENSGT00940000157245	ENSGT00510000047493	ENSGT00950000183168.C	ENSGT00940000159334	ENSGT00390000004952.a.b	ENSGT00390000000155.a.b	ENSGT00950000183000.c.a.a	ENSGT00940000158566	ENSGT00940000166209	ENSGT00390000009423.a
Poecilia	ANCESTRAL SPECIES	33		ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT01100000263513.a.a.b.b.b.b.a.a.b.a.d	ENSGT00950000183071.a.b	ENSGT00950000182897.B.a.b.a	ENSGT00940000157245	ENSGT00510000047493	ENSGT00950000183168.C	ENSGT00940000159334	ENSGT00390000004952.a.b	ENSGT00390000000155.a.b	ENSGT00950000183000.c.a.a	ENSGT00940000158566	ENSGT00940000166209	ENSGT00390000009423.a
NAME_6	ANCESTRAL SPECIES	41		ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT01100000263513.a.a.b.b.b.b.a.a.b.a.d	ENSGT00950000183071.a.b	ENSGT00950000182897.B.a.b.a	ENSGT00940000157245	ENSGT00510000047493	ENSGT00950000183168.C	ENSGT00940000159334	ENSGT00390000004952.a.b	ENSGT00390000000155.a.b	ENSGT00950000183000.c.a.a	ENSGT00940000158566	ENSGT00940000166209.c	ENSGT00390000009423.a
Amazon molly	MODERN SPECIES	319						ENSPFOG00000005612	pde6a (ENSPFOG00000005692)	SLC26A2 (ENSPFOG00000006250)	HTR4 (ENSPFOG00000006342)	lman2 (ENSPFOG00000006470)	FAT2 (ENSPFOG00000006694) #19	mtnr1al (ENSPFOG00000024813)	SLC36A1 (ENSPFOG00000007576) #18	atox1 (ENSPFOG00000007849)	sparc (ENSPFOG00000007866) #20	g3bp1 (ENSPFOG00000007942) #22	glra1 (ENSPFOG00000008160) #23	slc25a48 (ENSPFOG00000008394)	ENSPFOG00000008455	hs6st2 (ENSPFOG00000008569)	mbnl3 (ENSPFOG00000008576)	rap2c (ENSPFOG00000008698)	zgc:92907 (ENSPFOG00000008711)	ENSPFOG00000008718	FOXO4 (ENSPFOG00000008795)	ubl3b (ENSPFOG00000008801)	ENSPFOG00000020747	cfl1 (ENSPFOG00000008862)	atl3 (ENSPFOG00000008872)	ENSPFOG00000021830	yif1a (ENSPFOG00000009186)
Sailfin molly	MODERN SPECIES	363													ENSPLAG00000009723 #18	atox1 (ENSPLAG00000009712)	sparc (ENSPLAG00000009701) #20	g3bp1 (ENSPLAG00000009678) #22	glra1 (ENSPLAG00000009593) #23	slc25a48 (ENSPLAG00000009559)	ENSPLAG00000009558	hs6st2 (ENSPLAG00000009532)	mbnl3 (ENSPLAG00000009523)	rap2c (ENSPLAG00000009493)	zgc:92907 (ENSPLAG00000009486)	ENSPLAG00000009474	FOXO4 (ENSPLAG00000009430)	ubl3b (ENSPLAG00000009424)	ENSPLAG00000000771	cfl1 (ENSPLAG00000009396)	atl3 (ENSPLAG00000009364)	ENSPLAG00000009328
Guppy	MODERN SPECIES	440	SMU1 (ENSPREG00000007516)	CPXM1 (ENSPREG00000007548)	ELP1 (ENSPREG00000007602)	ARHGEF37 (ENSPREG00000007695)	ENSPREG00000007743	pde6a (ENSPREG00000007789)	SLC26A2 (ENSPREG00000007894)	HTR4 (ENSPREG00000007913)	ENSPREG00000007943	lman2 (ENSPREG00000007962)	FAT2 (ENSPREG00000007999) #19	mtnr1al (ENSPREG00000008094)	SLC36A1 (ENSPREG00000008299) #18	atox1 (ENSPREG00000008315)	sparc (ENSPREG00000008334) #20	g3bp1 (ENSPREG00000008376) #22	glra1 (ENSPREG00000008393) #23	slc25a48 (ENSPREG00000008440)	ENSPREG00000008476	hs6st2 (ENSPREG00000008516)	mbnl3 (ENSPREG00000008529)	rap2c (ENSPREG00000008551)	zgc:92907 (ENSPREG00000008705)	ENSPREG00000008716	FOXO4 (ENSPREG00000008731)	ubl3b (ENSPREG00000008737)	ENSPREG00000008747	cfl1 (ENSPREG00000008760)	atl3 (ENSPREG00000008772)	ENSPREG00000008785	yif1a (ENSPREG00000008800)
Platyfish	MODERN SPECIES	15	CPXM1 (ENSXMAG00000019113)	ELP1 (ENSXMAG00000019128)	ARHGEF37 (ENSXMAG00000019168)	ENSXMAG00000019179	pde6a (ENSXMAG00000019181)	SLC26A2 (ENSXMAG00000019224)	HTR4 (ENSXMAG00000019228)	fabp4a (ENSXMAG00000028083)	lman2 (ENSXMAG00000019231)	FAT2 (ENSXMAG00000019238) #19	mtnr1al (ENSXMAG00000019248)	SLC36A1 (ENSXMAG00000019249) #18	atox1 (ENSXMAG00000019253)	ENSXMAG00000022019	sparc (ENSXMAG00000019254) #20	g3bp1 (ENSXMAG00000019255) #22	glra1 (ENSXMAG00000019257) #23	ENSXMAG00000022787	slc25a48 (ENSXMAG00000028496)	ENSXMAG00000025700	hs6st2 (ENSXMAG00000013087)	mbnl3 (ENSXMAG00000013089)	rap2c (ENSXMAG00000022360)	zgc:92907 (ENSXMAG00000013102)	ENSXMAG00000013107	FOXO4 (ENSXMAG00000013124)	ubl3b (ENSXMAG00000023517)	ENSXMAG00000019512	cfl1 (ENSXMAG00000013129)	atl3 (ENSXMAG00000013131)	ENSXMAG00000021942
NAME_4	ANCESTRAL SPECIES	23	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT01100000263513.a.a.b.b.b.b.a.a.b.a.d	ENSGT00950000183071.a.b	ENSGT00950000182897.B.a.b.a	ENSGT00940000157245	ENSGT00510000047493	ENSGT00950000183168.C	ENSGT00940000159334	ENSGT00390000004952.a.b	ENSGT00390000000155.a.b	ENSGT00950000183000.c.a.a	ENSGT00940000158566	ENSGT00940000166209	ENSGT00390000009423.a
Mummichog	MODERN SPECIES	2190	SMU1 (ENSFHEG00000013585)	CPXM1 (ENSFHEG00000013615)	ELP1 (ENSFHEG00000013864)	ARHGEF37 (ENSFHEG00000013887)	ENSFHEG00000013904	pde6a (ENSFHEG00000013968)	SLC26A2 (ENSFHEG00000014001)	HTR4 (ENSFHEG00000014052)	lman2 (ENSFHEG00000014092)	ENSFHEG00000014102	FAT2 (ENSFHEG00000014164) #19	mtnr1al (ENSFHEG00000014772)	SLC36A1 (ENSFHEG00000014799) #18	atox1 (ENSFHEG00000014808)	sparc (ENSFHEG00000014851) #20	g3bp1 (ENSFHEG00000014921) #22	glra1 (ENSFHEG00000014957) #23	slc25a48 (ENSFHEG00000014982)	ENSFHEG00000015012	hs6st2 (ENSFHEG00000015019)	mbnl3 (ENSFHEG00000015097)	rap2c (ENSFHEG00000015109)	zgc:92907 (ENSFHEG00000015126)	ENSFHEG00000015140	FOXO4 (ENSFHEG00000015149)	ubl3b (ENSFHEG00000015205)	ENSFHEG00000015220	cfl1 (ENSFHEG00000015243)	atl3 (ENSFHEG00000015313)	ENSFHEG00000015333	yif1a (ENSFHEG00000015363)
Sheepshead minnow	MODERN SPECIES	171	SLC44A1 (ENSCVAG00000005295)	ENSCVAG00000005311	neurog1 (ENSCVAG00000005319)	ENSCVAG00000005325	ENSCVAG00000005337	ENSCVAG00000005349	EBF4 (ENSCVAG00000005393)	SLC26A2 (ENSCVAG00000005401)	HTR4 (ENSCVAG00000005422)	lman2 (ENSCVAG00000005444)	FAT2 (ENSCVAG00000005460) #19	mtnr1al (ENSCVAG00000006149)	SLC36A1 (ENSCVAG00000000178) #18	atox1 (ENSCVAG00000006172)	sparc (ENSCVAG00000006179) #20	g3bp1 (ENSCVAG00000006194) #22	glra1 (ENSCVAG00000006211) #23
Oryzias	ANCESTRAL SPECIES	17	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00390000003288 #15	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00950000183026.A.a.b #14	ENSGT00940000160738	ENSGT00950000183201.b.b.b.a	ENSGT00950000182915.a.a.a
Oryzias_b	ANCESTRAL SPECIES	47	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00390000003288 #15	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00950000183026.A.a.b #14	ENSGT00940000160738	ENSGT00950000183201.b.b.b.a	ENSGT00950000182915.a.a.a
Javanese ricefish	MODERN SPECIES	1	SMU1 (ENSOJAG00000003282)	CPXM1 (ENSOJAG00000003183)	ELP1 (ENSOJAG00000003026)	ARHGEF37 (ENSOJAG00000003008)	ENSOJAG00000002980	SLC26A2 (ENSOJAG00000002886)	pde6a (ENSOJAG00000002703)	HTR4 (ENSOJAG00000002669)	lman2 (ENSOJAG00000002630)	ENSOJAG00000002615	FAT2 (ENSOJAG00000002493) #19	mtnr1al (ENSOJAG00000002461)	SLC36A1 (ENSOJAG00000002330) #18	atox1 (ENSOJAG00000002296)	sparc (ENSOJAG00000002111) #20	g3bp1 (ENSOJAG00000002007) #22	glra1 (ENSOJAG00000001876) #23	slc25a48 (ENSOJAG00000001835)	ENSOJAG00000001821	cplx2 (ENSOJAG00000001813)	ENSOJAG00000001798	ENSOJAG00000001769	gm2a (ENSOJAG00000001748) #15	PCDH12 (ENSOJAG00000001726)	PCDH1 (ENSOJAG00000001705)	ENSOJAG00000001686	LTC4S (ENSOJAG00000001666)	ENSOJAG00000001607	ENSOJAG00000001577	mgat4b (ENSOJAG00000022654)	NFKB1 (ENSOJAG00000022598)
Indian medaka	MODERN SPECIES	37	CPLX1 (ENSOMEG00000020838)	SMU1 (ENSOMEG00000020867)	CPXM1 (ENSOMEG00000020904)	ELP1 (ENSOMEG00000021054)	ARHGEF37 (ENSOMEG00000021154)	ENSOMEG00000021279	pde6a (ENSOMEG00000021321)	SLC26A2 (ENSOMEG00000021337)	HTR4 (ENSOMEG00000021442)	lman2 (ENSOMEG00000021496)	FAT2 (ENSOMEG00000021558) #19	mtnr1al (ENSOMEG00000021575)	SLC36A1 (ENSOMEG00000021599) #18	atox1 (ENSOMEG00000021626)	sparc (ENSOMEG00000021664) #20	g3bp1 (ENSOMEG00000021702) #22	glra1 (ENSOMEG00000021793) #23	ENSOMEG00000021833	slc25a48 (ENSOMEG00000021884)	ENSOMEG00000021911	cplx2 (ENSOMEG00000021947)	thoc3 (ENSOMEG00000021977)	ENSOMEG00000022005	gm2a (ENSOMEG00000022026) #15	PCDH12 (ENSOMEG00000022043)	ENSOMEG00000022057	PCDH1 (ENSOMEG00000022101)	ENSOMEG00000022135	tmem216 (ENSOMEG00000022141)	tmed9 (ENSOMEG00000022161)	b4galt7 (ENSOMEG00000022170)
Oryzias_a	ANCESTRAL SPECIES	65	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583.g #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00390000003288 #15	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00950000183026.A.a.b #14	ENSGT00940000160738	ENSGT00950000183201.b.b.b.a	ENSGT00950000182915.a.a.a
Japanese Medaka HdrR	MODERN SPECIES	1	SMU1 (ENSORLG00000011072)	CPXM1 (ENSORLG00000011088)	ELP1 (ENSORLG00000011140)	ARHGEF37 (ENSORLG00000011154)	ENSORLG00000011166	pde6a (ENSORLG00000023972)	SLC26A2 (ENSORLG00000011237)	HTR4 (ENSORLG00000011251)	lman2 (ENSORLG00000011264)	ENSORLG00000011281 #19	ENSORLG00000026927	mtnr1al (ENSORLG00000023936)	SLC36A1 (ENSORLG00000011309) #18	atox1 (ENSORLG00000022837)	sparc (ENSORLG00000011369) #20	g3bp1 (ENSORLG00000011422) #22	glra1 (ENSORLG00000011468) #23	slc25a48 (ENSORLG00000011483)	ENSORLG00000011492	ENSORLG00000024576	cplx2 (ENSORLG00000011505)	thoc3 (ENSORLG00000030384)	ENSORLG00000011511	gm2a (ENSORLG00000024392) #15	PCDH12 (ENSORLG00000011535)	ENSORLG00000027731	ENSORLG00000011559	ENSORLG00000026178	ENSORLG00000028614	ENSORLG00000029453	ENSORLG00000028242
Chinese medaka	MODERN SPECIES	59														SLC36A1 (ENSOSIG00000014503) #18	sparc (ENSOSIG00000014526) #20	g3bp1 (ENSOSIG00000014554) #22	glra1 (ENSOSIG00000014560) #23	slc25a48 (ENSOSIG00000014563)	ENSOSIG00000014565	thoc3 (ENSOSIG00000014569)	ENSOSIG00000014575	gm2a (ENSOSIG00000014576) #15	PCDH12 (ENSOSIG00000014577)	PCDH1 (ENSOSIG00000014579)	ENSOSIG00000014587	ENSOSIG00000014588	tmem216 (ENSOSIG00000014598)	tmed9 (ENSOSIG00000014602)	b4galt7 (ENSOSIG00000014617)	ENSOSIG00000014618	ENSOSIG00000014620 #14
Ovalentaria_B	ANCESTRAL SPECIES	13	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00940000177647	ENSGT00980000198740	ENSGT00510000048167.b.b	ENSGT00390000003288 #15	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #14
Pomacentridae	ANCESTRAL SPECIES	58	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT00940000156471.b.a.a	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00940000177647	ENSGT00980000198740	ENSGT00510000048167.b.b	ENSGT00390000003288 #15	ENSGT00940000160403	ENSGT00940000153909.b	ENSGT00940000164256	ENSGT00940000162861	ENSGT00570000079101.a.b.d	ENSGT00940000177596	ENSGT00570000079101.a.b.c
Pomacentridae_A	ANCESTRAL SPECIES	60	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.a.a	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT01090000260059.a.b.b.b.a.d.a.a.b.b.a	ENSGT00940000158129	ENSGT00940000177647	ENSGT00980000198740	ENSGT00390000003288 #15	ENSGT00940000160403	ENSGT00940000153909.b	ENSGT00940000164256	ENSGT00940000162861	ENSGT00570000079101.a.b.d	ENSGT00940000177596	ENSGT00570000079101.a.b.c
Amphiprion	ANCESTRAL SPECIES	86	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B.g	ENSGT00390000013344.g.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.a.a	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT01090000260059.a.b.b.b.a.d.a.a.b.b.a.b	ENSGT00940000158129	ENSGT00940000177647	ENSGT00980000198740	ENSGT00390000003288 #15	ENSGT01100000263513.a.a.b.b.b.b.a.a.b.b.b.h	ENSGT00940000160403	ENSGT00940000153909.b	ENSGT00940000164256	ENSGT00940000162861	ENSGT00570000079101.a.b.d	ENSGT00940000177596
Orange clownfish	MODERN SPECIES	4	ARHGEF37 (ENSAPEG00000001968)	ENSAPEG00000002056	ENSAPEG00000002065	ENSAPEG00000002142	ENSAPEG00000002162	pde6a (ENSAPEG00000002213)	SLC26A2 (ENSAPEG00000002310)	HTR4 (ENSAPEG00000002336)	lman2 (ENSAPEG00000002391)	FAT2 (ENSAPEG00000002455) #19	mtnr1al (ENSAPEG00000002565)	ENSAPEG00000002913	SLC36A1 (ENSAPEG00000002957) #18	atox1 (ENSAPEG00000003010)	sparc (ENSAPEG00000003035) #20	g3bp1 (ENSAPEG00000003082) #22	glra1 (ENSAPEG00000003138) #23	slc25a48 (ENSAPEG00000003175)	cplx2 (ENSAPEG00000003197)	ENSAPEG00000003204	thoc3 (ENSAPEG00000003216)	ENSAPEG00000003233	ENSAPEG00000003257	gm2a (ENSAPEG00000003318) #15	ENSAPEG00000003350	PCDH12 (ENSAPEG00000003389)	SIL1 (ENSAPEG00000003396)	uvssa (ENSAPEG00000003434)	ENSAPEG00000003451	nkx1.2lb (ENSAPEG00000003459)	ENSAPEG00000003478
Clown anemonefish	MODERN SPECIES	436							pde6a (ENSAOCG00000023185)	SLC26A2 (ENSAOCG00000023193)	HTR4 (ENSAOCG00000023228)	lman2 (ENSAOCG00000023273)	FAT2 (ENSAOCG00000023321) #19	mtnr1al (ENSAOCG00000023656)	SLC36A1 (ENSAOCG00000001733) #18	atox1 (ENSAOCG00000023733)	sparc (ENSAOCG00000001739) #20	g3bp1 (ENSAOCG00000012401) #22	fkbp2 (ENSAOCG00000000764)	ENSAOCG00000012465	MELTF (ENSAOCG00000012487)	ENSAOCG00000012728
Spiny chromis	MODERN SPECIES	521												mtnr1al (ENSAPOG00000019136)	SLC36A1 (ENSAPOG00000019233) #18	atox1 (ENSAPOG00000019254)	sparc (ENSAPOG00000019275) #20	g3bp1 (ENSAPOG00000019362) #22	glra1 (ENSAPOG00000019412) #23
Bicolor damselfish	MODERN SPECIES	281										lman2 (ENSSPAG00000013526)	FAT2 (ENSSPAG00000013542) #19	mtnr1al (ENSSPAG00000013624)	SLC36A1 (ENSSPAG00000014053) #18	atox1 (ENSSPAG00000014098)	sparc (ENSSPAG00000014103) #20	g3bp1 (ENSSPAG00000014125) #22	glra1 (ENSSPAG00000014160) #23	slc25a48 (ENSSPAG00000014186)	cplx2 (ENSSPAG00000014202)	thoc3 (ENSSPAG00000014229)	COG1 (ENSSPAG00000014267)	ENSSPAG00000014336
Cichlidae	ANCESTRAL SPECIES	8	ENSGT00950000183097.a.a.a.f.a.b	ENSGT00390000016876	ENSGT00920000149138	ENSGT00940000157929	ENSGT00940000154508.a.a.s.b	ENSGT00390000015511	ENSGT00940000153232.a.b.b	ENSGT00940000178166	ENSGT00940000159063	ENSGT00940000160971	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00940000177647	ENSGT00980000198740	ENSGT00510000048167.b.b	ENSGT00390000003288 #15	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #14
Pseudocrenilabrinae	ANCESTRAL SPECIES	27						ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00940000156583 #18	ENSGT00940000165176	ENSGT00940000158507 #19	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00940000177647	ENSGT00980000198740	ENSGT00510000048167.b.b	ENSGT00390000003288 #15	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #14
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	31						ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00940000156583 #18	ENSGT00940000165176	ENSGT00940000158507 #19	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00940000177647	ENSGT00980000198740	ENSGT00510000048167.b.b	ENSGT00390000003288 #15	ENSGT00940000160403	ENSGT00940000181346	ENSGT00690000103768	ENSGT00940000155521.a.a	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712
Haplochromini	ANCESTRAL SPECIES	25					ENSGT00950000183137.b.b	ENSGT00940000156471.b.b.d	ENSGT00940000156471.b.b.c	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00940000156583 #18	ENSGT00940000165176	ENSGT00940000158507 #19	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00940000177647	ENSGT00980000198740	ENSGT00510000048167.b.b	ENSGT00390000003288 #15	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000179353	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A
Haplochromini_A	ANCESTRAL SPECIES	28					ENSGT00950000183137.b.b	ENSGT00940000156471.b.b.d	ENSGT00940000156471.b.b.c	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00940000156583 #18	ENSGT00940000165176	ENSGT00940000158507 #19	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00940000177647	ENSGT00980000198740	ENSGT00510000048167.b.b	ENSGT00390000003288 #15	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000179353	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A
Haplochromini_B	ANCESTRAL SPECIES	45				ENSGT00940000166278.B.b.b.e.b.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b.d	ENSGT00940000156471.b.b.c	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00510000046787.e.b #20	ENSGT00940000163780	ENSGT00940000156583 #18	ENSGT00940000165176	ENSGT00940000158507 #19	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00940000177647	ENSGT00980000198740	ENSGT00510000048167.b.b	ENSGT00390000003288 #15	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000179353	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A
Zebra mbuna	MODERN SPECIES	9																g3bp1 (ENSMZEG00005020372) #22	glra1 (ENSMZEG00005020364) #23	slc25a48 (ENSMZEG00005020353)	ENSMZEG00005020332	cplx2 (ENSMZEG00005020328)	thoc3 (ENSMZEG00005020327)	ENSMZEG00005020323	ENSMZEG00005020317	gm2a (ENSMZEG00005020313) #15	PCDH12 (ENSMZEG00005020308)	ENSMZEG00005020294
Eastern happy	MODERN SPECIES	11	ENSACLG00000018344	ENSACLG00000018304	ENSACLG00000018214	ENSACLG00000018203	pde6a (ENSACLG00000018110)	SLC26A2 (ENSACLG00000018100)	HTR4 (ENSACLG00000018039)	lman2 (ENSACLG00000017897)	sparc (ENSACLG00000017854) #20	atox1 (ENSACLG00000017840)	ENSACLG00000017836	SLC36A1 (ENSACLG00000017816) #18	ENSACLG00000017808	mtnr1al (ENSACLG00000017502)	FAT2 (ENSACLG00000017446) #19	g3bp1 (ENSACLG00000017400) #22	glra1 (ENSACLG00000017381) #23	ENSACLG00000017366	slc25a48 (ENSACLG00000017299)	ENSACLG00000017283	cplx2 (ENSACLG00000017269)	thoc3 (ENSACLG00000017219)	ENSACLG00000017193	ENSACLG00000017142	gm2a (ENSACLG00000017131) #15	PCDH12 (ENSACLG00000017113)	ENSACLG00000017059	ENSACLG00000016967	PCDH1 (ENSACLG00000016940)	ENSACLG00000016851	tmem216 (ENSACLG00000016820)
P. nyererei	MODERN SPECIES	403					SLITRK2 (ENSPNYG00000002279)	ENSPNYG00000002297	ENSPNYG00000002312	pde6a (ENSPNYG00000002332)	HTR4 (ENSPNYG00000002465)	lman2 (ENSPNYG00000002508)	sparc (ENSPNYG00000002557) #20	atox1 (ENSPNYG00000002572)	SLC36A1 (ENSPNYG00000002584) #18	mtnr1al (ENSPNYG00000002639)	FAT2 (ENSPNYG00000002951) #19	g3bp1 (ENSPNYG00000003109) #22	glra1 (ENSPNYG00000003130) #23
Burton s mouthbrooder	MODERN SPECIES	661										lman2 (ENSHBUG00000011735)	sparc (ENSHBUG00000011708) #20	atox1 (ENSHBUG00000011702)	SLC36A1 (ENSHBUG00000011692) #18	mtnr1al (ENSHBUG00000000316)	FAT2 (ENSHBUG00000011677) #19	g3bp1 (ENSHBUG00000011664) #22	glra1 (ENSHBUG00000011656) #23
Lyretail cichlid	MODERN SPECIES	341						ENSNBRG00000014405	pde6a (ENSNBRG00000014374)	SLC26A2 (ENSNBRG00000014354)	HTR4 (ENSNBRG00000014298)	lman2 (ENSNBRG00000014278)	sparc (ENSNBRG00000014248) #20	atox1 (ENSNBRG00000014234)	SLC36A1 (ENSNBRG00000014207) #18	mtnr1al (ENSNBRG00000014190)	FAT2 (ENSNBRG00000014129) #19	g3bp1 (ENSNBRG00000014110) #22	glra1 (ENSNBRG00000014047) #23	slc25a48 (ENSNBRG00000014029)	ENSNBRG00000013981	ENSNBRG00000013963	cplx2 (ENSNBRG00000013942)	thoc3 (ENSNBRG00000013917)	ENSNBRG00000013910	ENSNBRG00000013871	gm2a (ENSNBRG00000013855) #15	PCDH12 (ENSNBRG00000013849)	ENSNBRG00000013836	ENSNBRG00000013827	PCDH1 (ENSNBRG00000013804)	ENSNBRG00000013792	tmem216 (ENSNBRG00000013774)
Nile tilapia	MODERN SPECIES	11	ENSONIG00000034724	ENSONIG00000011597	hvcn1 (ENSONIG00000011600)	ENSONIG00000033209	ENSONIG00000029076	ENSONIG00000034676	ENSONIG00000000448	ENSONIG00000036363	ENSONIG00000039619	lman2 (ENSONIG00000004227)	sparc (ENSONIG00000004238) #20	atox1 (ENSONIG00000042461)	SLC36A1 (ENSONIG00000004246) #18	FAT2 (ENSONIG00000004254) #19	ENSONIG00000028244	g3bp1 (ENSONIG00000004263) #22	glra1 (ENSONIG00000004272) #23	ENSONIG00000034220	slc25a48 (ENSONIG00000004280)	ENSONIG00000031819	ENSONIG00000029016	ENSONIG00000034689	ENSONIG00000004284	ENSONIG00000040032	cplx2 (ENSONIG00000004287)	thoc3 (ENSONIG00000004291)	ENSONIG00000004292	gm2a (ENSONIG00000004295) #15	PCDH12 (ENSONIG00000004298)	PCDH1 (ENSONIG00000004300)	ENSONIG00000036491
Midas cichlid	MODERN SPECIES	104												mtnr1al (ENSACIG00000024322)	SLC36A1 (ENSACIG00000024321) #18	atox1 (ENSACIG00000024316)	sparc (ENSACIG00000024305) #20	g3bp1 (ENSACIG00000024294) #22	glra1 (ENSACIG00000024291) #23	slc25a48 (ENSACIG00000024289)	raly (ENSACIG00000024288)	ENSACIG00000024286	ahcy (ENSACIG00000024281)	ENSACIG00000024279	ENSACIG00000024278	ENSACIG00000024277	ENSACIG00000024274	pck1 (ENSACIG00000024272)	pmepa1 (ENSACIG00000024271)	ENSACIG00000024269	ccndbp1 (ENSACIG00000024264)	ENSACIG00000024261
Percomorphaceae_C	ANCESTRAL SPECIES	16	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00390000003288 #15	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #14	ENSGT00940000160738	ENSGT00950000183201.b.b.b.a
Percomorphaceae_D	ANCESTRAL SPECIES	17	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00390000003288 #15	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000175795	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #14	ENSGT00940000160738
Carangaria	ANCESTRAL SPECIES	15	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00390000003288 #15	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #14	ENSGT00940000160738	ENSGT00950000183201.b.b.b.a
Pleuronectoidei	ANCESTRAL SPECIES	19	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b
Tongue sole	MODERN SPECIES	6	ENSCSEG00000012595 #14	emx3 (ENSCSEG00000012600)	b4galt7 (ENSCSEG00000012610)	tmed9 (ENSCSEG00000012631)	ENSCSEG00000012640	tmem216 (ENSCSEG00000012643)	tbpl1 (ENSCSEG00000012646)	ENSCSEG00000012656	ENSCSEG00000012682	ENSCSEG00000012698	neurog1 (ENSCSEG00000012706)	ENSCSEG00000012714	NFKB1 (ENSCSEG00000012728)	DGKQ (ENSCSEG00000012752)	sparc (ENSCSEG00000012770) #20	g3bp1 (ENSCSEG00000012777) #22	glra1 (ENSCSEG00000012786) #23	slc25a48 (ENSCSEG00000012814)	cplx2 (ENSCSEG00000012830)	ENSCSEG00000012841	thoc3 (ENSCSEG00000012846)	ENSCSEG00000012856	PCDH12 (ENSCSEG00000012882)	ENSCSEG00000012886	PCDH1 (ENSCSEG00000012889)	vma21 (ENSCSEG00000012897)	mtnr1c (ENSCSEG00000012906)	neurl1b (ENSCSEG00000012917)	dusp1 (ENSCSEG00000012938)	ergic1 (ENSCSEG00000012949)	flt4 (ENSCSEG00000012965)
Turbot	MODERN SPECIES	4	ENSSMAG00000007084	ENSSMAG00000007074 #15	ENSSMAG00000007035	ARHGEF37 (ENSSMAG00000006958)	ENSSMAG00000006930	pde6a (ENSSMAG00000006883)	SLC26A2 (ENSSMAG00000029056)	ENSSMAG00000030425	ENSSMAG00000006358	ENSSMAG00000006434 #19	mtnr1al (ENSSMAG00000025091)	ENSSMAG00000006543 #18	atox1 (ENSSMAG00000006562)	ENSSMAG00000031040	sparc (ENSSMAG00000006598) #20	g3bp1 (ENSSMAG00000006669) #22	glra1 (ENSSMAG00000006718) #23	ENSSMAG00000027427	slc25a48 (ENSSMAG00000006758)	ENSSMAG00000006775	ENSSMAG00000006786	ENSSMAG00000006811	ENSSMAG00000026109	ENSSMAG00000035912	ENSSMAG00000005812	ENSSMAG00000005758	ENSSMAG00000005820	ENSSMAG00000005971	ENSSMAG00000006012	ENSSMAG00000028744	ENSSMAG00000006037
Carangaria_A	ANCESTRAL SPECIES	17	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00390000003288 #15	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #14	ENSGT00940000160738	ENSGT00950000183201.b.b.b.a
Barramundi perch	MODERN SPECIES	61	ENSLCAG00010006267	VCPIP1 (ENSLCAG00010006269)	ENSLCAG00010006273	ENSLCAG00010006287	ENSLCAG00010006302	ENSLCAG00010006311	ENSLCAG00010006358	ENSLCAG00010006377	fam49ba (ENSLCAG00010006387)	PHB2 (ENSLCAG00010006417)	ENSLCAG00010006461	mtnr1al (ENSLCAG00010006464)	SLC36A1 (ENSLCAG00010006468) #18	atox1 (ENSLCAG00010006472)	sparc (ENSLCAG00010006486) #20	g3bp1 (ENSLCAG00010006527) #22	glra1 (ENSLCAG00010006550) #23
Seriola	ANCESTRAL SPECIES	31	ENSGT00950000183159.a.v.b	ENSGT00940000159958	ENSGT00390000011368	ENSGT00390000012346	ENSGT00940000155372	ENSGT00940000155988.d	ENSGT00940000154372.a.b.b	ENSGT00940000154372.a.a.a	ENSGT00530000063586.b.c.b	ENSGT00390000010628.b	ENSGT00390000005639.a.a	ENSGT00390000000470.n	ENSGT00940000156495	ENSGT00940000156418	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00980000198740	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000155521.a.a	ENSGT00940000160403	ENSGT00390000003288 #15	ENSGT00940000157174.d	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #14	ENSGT00940000160738
Greater amberjack	MODERN SPECIES	113	ENSSDUG00000007997	phox2bb (ENSSDUG00000008009)	tmem33 (ENSSDUG00000008030)	bbs7 (ENSSDUG00000008052)	ccna2 (ENSSDUG00000008091)	anxa5a (ENSSDUG00000008109)	fgfbp2a (ENSSDUG00000008124)	prom1a (ENSSDUG00000008149)	TAPT1 (ENSSDUG00000008283)	ldb2a (ENSSDUG00000008359)	qdpra (ENSSDUG00000008398)	fstl5 (ENSSDUG00000008435)	ENSSDUG00000008521	RAPGEF2 (ENSSDUG00000008556)	sparc (ENSSDUG00000008774) #20	g3bp1 (ENSSDUG00000008796) #22	glra1 (ENSSDUG00000008848) #23	slc25a48 (ENSSDUG00000008876)	cplx2 (ENSSDUG00000008912)	thoc3 (ENSSDUG00000008924)	ENSSDUG00000008946	TMED9 (ENSSDUG00000008984)	tmem216 (ENSSDUG00000008999)	tmed9 (ENSSDUG00000009010)
Yellowtail amberjack	MODERN SPECIES	2735														RAPGEF2 (ENSSLDG00000014751)	sparc (ENSSLDG00000014438) #20	g3bp1 (ENSSLDG00000014124) #22
Anabantaria	ANCESTRAL SPECIES	15	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00390000003288 #15	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000175795	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #14	ENSGT00940000160738
Zig-zag eel	MODERN SPECIES	1	SMU1 (ENSMAMG00000009833)	ENSMAMG00000009876	ENSMAMG00000009905	ARHGEF37 (ENSMAMG00000009959)	ENSMAMG00000009976	pde6a (ENSMAMG00000009992)	SLC26A2 (ENSMAMG00000010041)	ENSMAMG00000010057	ENSMAMG00000010079	ENSMAMG00000010102	ENSMAMG00000010137 #19	mtnr1al (ENSMAMG00000010266)	ENSMAMG00000025587 #18	atox1 (ENSMAMG00000026452)	sparc (ENSMAMG00000013092) #20	g3bp1 (ENSMAMG00000013109) #22	glra1 (ENSMAMG00000013123) #23	ENSMAMG00000013141	slc25a48 (ENSMAMG00000025670)	ENSMAMG00000013160	thoc3 (ENSMAMG00000013229)	ENSMAMG00000013268	ENSMAMG00000013307 #15	ENSMAMG00000013316	ENSMAMG00000013336	ENSMAMG00000013358	ENSMAMG00000013373	ENSMAMG00000013380	ENSMAMG00000013395	b4galt7 (ENSMAMG00000013415)	ENSMAMG00000028293
Anabantoidei	ANCESTRAL SPECIES	11	ENSGT00940000158395	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #19	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00390000003288 #15	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000175795	ENSGT00940000156526.a	ENSGT00950000182915.a.a.a	ENSGT00950000183201.b.b.b.a	ENSGT00940000160738	ENSGT00950000183026.A.a.b #14	ENSGT00940000157425.A
Climbing perch	MODERN SPECIES	22	ENSATEG00000016336	ENSATEG00000016353	ENSATEG00000016390	ENSATEG00000016431	ENSATEG00000016770	ENSATEG00000016920	ENSATEG00000016937	ENSATEG00000016961	ENSATEG00000016976	ENSATEG00000028038	ENSATEG00000017137	mtnr1al (ENSATEG00000017184)	ENSATEG00000017558 #18	atox1 (ENSATEG00000017575)	sparc (ENSATEG00000017589) #20	g3bp1 (ENSATEG00000017646) #22	glra1 (ENSATEG00000017876) #23	slc25a48 (ENSATEG00000017906)	ENSATEG00000026908	thoc3 (ENSATEG00000017937)	ENSATEG00000017955	ENSATEG00000029734 #15	ENSATEG00000018020	ENSATEG00000018043	mgat4b (ENSATEG00000018078)	canx (ENSATEG00000018130)	ENSATEG00000018177	LTC4S (ENSATEG00000018191)	ENSATEG00000029494 #14	ENSATEG00000027104	b4galt7 (ENSATEG00000027061)
Siamese fighting fish	MODERN SPECIES	1	pde6a (ENSBSLG00000013481)	ENSBSLG00000015167	ENSBSLG00000015247	pde6a (ENSBSLG00000015328)	SLC26A2 (ENSBSLG00000015748)	HTR4 (ENSBSLG00000016615)	ENSBSLG00000016655	lman2 (ENSBSLG00000016786)	FAT2 (ENSBSLG00000017201) #19	mtnr1al (ENSBSLG00000017576)	ENSBSLG00000017594	SLC36A1 (ENSBSLG00000017616) #18	ENSBSLG00000017773	atox1 (ENSBSLG00000017779)	sparc (ENSBSLG00000017795) #20	g3bp1 (ENSBSLG00000018181) #22	glra1 (ENSBSLG00000018233) #23	ENSBSLG00000018404	slc25a48 (ENSBSLG00000018412)	cplx2 (ENSBSLG00000018425)	thoc3 (ENSBSLG00000018438)	gm2a (ENSBSLG00000018748) #15	ENSBSLG00000018772	PCDH12 (ENSBSLG00000018808)	ENSBSLG00000018840	PCDH1 (ENSBSLG00000018852)	ENSBSLG00000018865	mgat4b (ENSBSLG00000018940)	ENSBSLG00000002337	canx (ENSBSLG00000002477)	MAML1 (ENSBSLG00000002949)
Eupercaria	ANCESTRAL SPECIES	12	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00390000003288 #15	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #14	ENSGT00940000160738	ENSGT00950000183201.b.b.b.a
Tetraodontidae	ANCESTRAL SPECIES	104					ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.a.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00390000003288 #15
Fugu	MODERN SPECIES	5	ENSTRUG00000029551	DGKQ (ENSTRUG00000002613)	mgat4b (ENSTRUG00000001769)	canx (ENSTRUG00000001564)	ARHGEF37 (ENSTRUG00000003793)	ENSTRUG00000020349	ENSTRUG00000033350	SLC26A2 (ENSTRUG00000001304)	HTR4 (ENSTRUG00000001258)	lman2 (ENSTRUG00000001185)	FAT2 (ENSTRUG00000030114) #19	mtnr1al (ENSTRUG00000027279)	SLC36A1 (ENSTRUG00000027926) #18	atox1 (ENSTRUG00000033174)	sparc (ENSTRUG00000014364) #20	g3bp1 (ENSTRUG00000024045) #22	ENSTRUG00000024876	slc25a48 (ENSTRUG00000002430)	cplx2 (ENSTRUG00000028930)	thoc3 (ENSTRUG00000002925)	ENSTRUG00000003172	gm2a (ENSTRUG00000023982) #15	ELP1 (ENSTRUG00000001880)	ENSTRUG00000026768	ENSTRUG00000031678	CPXM1 (ENSTRUG00000003892)	SMU1 (ENSTRUG00000004467)	CPLX1 (ENSTRUG00000030904)	PCGF3 (ENSTRUG00000027521)	SLC49A3 (ENSTRUG00000004972)	NCBP1 (ENSTRUG00000005287)
Tetraodon	MODERN SPECIES	12	mmgt1 (ENSTNIG00000005954)	ints6l (ENSTNIG00000005907)	mospd1 (ENSTNIG00000005906)	pabir2 (ENSTNIG00000005905)	hprt1 (ENSTNIG00000005904)	phf6 (ENSTNIG00000005908)	gpc3 (ENSTNIG00000004678)	pde6a (ENSTNIG00000006320)	SLC26A2 (ENSTNIG00000006319)	HTR4 (ENSTNIG00000006318)	lman2 (ENSTNIG00000006317)	FAT2 (ENSTNIG00000006316) #19	mtnr1al (ENSTNIG00000012951)	SLC36A1 (ENSTNIG00000012952) #18	sparc (ENSTNIG00000012953) #20	g3bp1 (ENSTNIG00000012954) #22	glra1 (ENSTNIG00000012955) #23	slc25a48 (ENSTNIG00000012956)	ENSTNIG00000012957	thoc3 (ENSTNIG00000012958)	ENSTNIG00000012959	ENSTNIG00000012961	ENSTNIG00000012962	gm2a (ENSTNIG00000012960) #15	ENSTNIG00000001603	MAML1 (ENSTNIG00000012963)	LTC4S (ENSTNIG00000012964)	ENSTNIG00000000748 #14	emx3 (ENSTNIG00000012965)	b4galt7 (ENSTNIG00000001663)	b4galt7 (ENSTNIG00000012966)
Eupecaria_A	ANCESTRAL SPECIES	13	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00390000003288 #15	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #14	ENSGT00940000160738	ENSGT00950000183201.b.b.b.a
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	102	CPXM1 (ENSLBEG00000011886)	ELP1 (ENSLBEG00000011982)	ARHGEF37 (ENSLBEG00000012222)	ENSLBEG00000012248	ENSLBEG00000012274	pde6a (ENSLBEG00000012336)	SLC26A2 (ENSLBEG00000012386)	HTR4 (ENSLBEG00000012464)	ENSLBEG00000012529	lman2 (ENSLBEG00000012552)	FAT2 (ENSLBEG00000012608) #19	mtnr1al (ENSLBEG00000012673)	SLC36A1 (ENSLBEG00000012690) #18	atox1 (ENSLBEG00000012711)	sparc (ENSLBEG00000012779) #20	g3bp1 (ENSLBEG00000012867) #22
Ballan wrasse	MODERN SPECIES	3383																g3bp1 (ENSLBEG00000005270) #22
Eupecaria_B	ANCESTRAL SPECIES	13	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00390000003288 #15	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #14	ENSGT00940000160738	ENSGT00950000183201.b.b.b.a
Eupecaria_C	ANCESTRAL SPECIES	12	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00390000003288 #15	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #14	ENSGT00940000160738	ENSGT00950000183201.b.b.b.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	14	ENSGT00940000155374.g.b	ENSGT00950000183097.a.a.a.f.a.b	ENSGT00390000016876	ENSGT00920000149138	ENSGT00940000157929	ENSGT00940000154508.a.a.s.b	ENSGT00390000015511	ENSGT00940000153232.a.b.b	ENSGT00940000159063	ENSGT00940000160971	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00390000003288 #15	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #14	ENSGT00940000160738	ENSGT00950000183201.b.b.b.a
European seabass	MODERN SPECIES	12	ENSDLAG00005010305	PTCD3 (ENSDLAG00005011664)	ENSDLAG00005011769	ST3GAL5 (ENSDLAG00005013896)	ACSL1 (ENSDLAG00005013960)	ENSDLAG00005027637	CASP3 (ENSDLAG00005015698)	irf2 (ENSDLAG00005016403)	ENSDLAG00005016477	ENSDLAG00005016489	ENSDLAG00005016514 #19	mtnr1al (ENSDLAG00005016876)	ENSDLAG00005016898 #18	atox1 (ENSDLAG00005016941)	sparc (ENSDLAG00005016959) #20	g3bp1 (ENSDLAG00005017164) #22	glra1 (ENSDLAG00005017185) #23	slc25a48 (ENSDLAG00005017388)	ENSDLAG00005032272	thoc3 (ENSDLAG00005017426)	ENSDLAG00005017453	ENSDLAG00005027344	ENSDLAG00005002542	ENSDLAG00005031337	ENSDLAG00005017512 #15	ENSDLAG00005017516	ENSDLAG00005017536	ENSDLAG00005029692	ENSDLAG00005031216	ENSDLAG00005030962	b4galt7 (ENSDLAG00005027918)
Large yellow croaker	MODERN SPECIES		ENSLCRG00005015328	ENSLCRG00005015325	spon2b (ENSLCRG00005015323)	zgc:136929 (ENSLCRG00005014374)	maea (ENSLCRG00005014353)	hnrnpa0b (ENSLCRG00005014351)	ENSLCRG00005014350	KLHL3 (ENSLCRG00005014349)	fam13b (ENSLCRG00005014346)	cxcl14 (ENSLCRG00005014343)	FAT2 (ENSLCRG00005013957) #19	mtnr1al (ENSLCRG00005013950)	SLC36A1 (ENSLCRG00005013944) #18	atox1 (ENSLCRG00005013942)	sparc (ENSLCRG00005013762) #20	g3bp1 (ENSLCRG00005013757) #22	glra1 (ENSLCRG00005013737) #23	ENSLCRG00005013734	ENSLCRG00005013733	VPS52 (ENSLCRG00005013729)	DCAF1 (ENSLCRG00005012647)	DOCK3 (ENSLCRG00005004429)	ENSLCRG00005004284	ENSLCRG00005004283	ENSLCRG00005004281	mfap3l (ENSLCRG00005004277) ##27	ino80b (ENSLCRG00005004275)	AADAT (ENSLCRG00005004263)	intu (ENSLCRG00005004258)	ENSLCRG00005004256	trmt10b (ENSLCRG00005004255)
Gilthead seabream	MODERN SPECIES	9	ENSSAUG00010005232	SMU1 (ENSSAUG00010005230)	CPXM1 (ENSSAUG00010005030)	ELP1 (ENSSAUG00010005003)	ARHGEF37 (ENSSAUG00010004993)	ENSSAUG00010004991	pde6a (ENSSAUG00010002712)	SLC26A2 (ENSSAUG00010002592)	HTR4 (ENSSAUG00010002579)	lman2 (ENSSAUG00010007219)	FAT2 (ENSSAUG00010007168) #19	mtnr1al (ENSSAUG00010007156)	SLC36A1 (ENSSAUG00010007141) #18	atox1 (ENSSAUG00010007132)	sparc (ENSSAUG00010007127) #20	g3bp1 (ENSSAUG00010007125) #22	glra1 (ENSSAUG00010005865) #23	ENSSAUG00010005845	slc25a48 (ENSSAUG00010005843)	cplx2 (ENSSAUG00010005838)	thoc3 (ENSSAUG00010005831)	ENSSAUG00010005828	gm2a (ENSSAUG00010005825) #15	PCDH12 (ENSSAUG00010005822)	ENSSAUG00010005820	PCDH1 (ENSSAUG00010005818)	ENSSAUG00010005814	ENSSAUG00010005812	tmed9 (ENSSAUG00010005808)	tmem216 (ENSSAUG00010005806)	TMED9 (ENSSAUG00010005802)
Perciformes	ANCESTRAL SPECIES	13	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00390000003288 #15	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #14	ENSGT00940000160738	ENSGT00950000183201.b.b.b.a
Perciformes_a	ANCESTRAL SPECIES	11	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00390000003288 #15	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #14	ENSGT00940000160738	ENSGT00950000183201.b.b.b.a
Channel bull blenny	MODERN SPECIES	1	ENSCGOG00000010710	pde6a (ENSCGOG00000010593)	SLC26A2 (ENSCGOG00000010540)	ENSCGOG00000010535	ENSCGOG00000010532	ENSCGOG00000010530	ENSCGOG00000010527	ENSCGOG00000010524	ENSCGOG00000010522	lman2 (ENSCGOG00000010320)	FAT2 (ENSCGOG00000010291) #19	mtnr1al (ENSCGOG00000010287)	SLC36A1 (ENSCGOG00000010245) #18	atox1 (ENSCGOG00000010243)	sparc (ENSCGOG00000010219) #20	g3bp1 (ENSCGOG00000009954) #22	glra1 (ENSCGOG00000009867) #23	slc25a48 (ENSCGOG00000009865)	cplx2 (ENSCGOG00000009862)	thoc3 (ENSCGOG00000009855)	ENSCGOG00000009847	gm2a (ENSCGOG00000009845) #15	PCDH12 (ENSCGOG00000009844)	ENSCGOG00000009840	ENSCGOG00000009832	ENSCGOG00000009828	PCDH1 (ENSCGOG00000009822)	ENSCGOG00000009818
Pike perch	MODERN SPECIES	32	SMU1 (ENSSLUG00000008987)	CPXM1 (ENSSLUG00000009022)	ELP1 (ENSSLUG00000009626)	ARHGEF37 (ENSSLUG00000010579)	PPARGC1B (ENSSLUG00000010596)	pde6a (ENSSLUG00000010640)	SLC26A2 (ENSSLUG00000010734)	HTR4 (ENSSLUG00000010737)	ENSSLUG00000010741	lman2 (ENSSLUG00000010760)	FAT2 (ENSSLUG00000010833) #19	mtnr1al (ENSSLUG00000010923)	SLC36A1 (ENSSLUG00000010933) #18	atox1 (ENSSLUG00000010960)	sparc (ENSSLUG00000010968) #20	g3bp1 (ENSSLUG00000011015) #22	glra1 (ENSSLUG00000011030) #23	ENSSLUG00000011073	slc25a48 (ENSSLUG00000011075)	cplx2 (ENSSLUG00000011079)	thoc3 (ENSSLUG00000011086)	ENSSLUG00000011094	ENSSLUG00000011100	gm2a (ENSSLUG00000005337) #15	ENSSLUG00000005345	PCDH12 (ENSSLUG00000005352)	ENSSLUG00000005371	PCDH1 (ENSSLUG00000005379)	ENSSLUG00000005388	ENSSLUG00000005396	ENSSLUG00000005402
Cottioidei	ANCESTRAL SPECIES	9	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00730000111972	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354
Lumpfish	MODERN SPECIES	1	ENSCLMG00005003883	ENSCLMG00005003884	ENSCLMG00005003887	ENSCLMG00005003888	pde6a (ENSCLMG00005003890)	SLC26A2 (ENSCLMG00005003895)	HTR4 (ENSCLMG00005003897)	lman2 (ENSCLMG00005003902)	ENSCLMG00005003907	FAT2 (ENSCLMG00005003911) #19	ENSCLMG00005004050	mtnr1al (ENSCLMG00005004051)	SLC36A1 (ENSCLMG00005004052) #18	atox1 (ENSCLMG00005004089)	sparc (ENSCLMG00005004091) #20	g3bp1 (ENSCLMG00005004122) #22	glra1 (ENSCLMG00005004137) #23	ENSCLMG00005004160	slc25a48 (ENSCLMG00005004162)	ENSCLMG00005004163	sqstm1 (ENSCLMG00005004165)	ENSCLMG00005004166	selenot2 (ENSCLMG00005004168)	ENSCLMG00005004169	COX18 (ENSCLMG00005004170)	igfbp7 (ENSCLMG00005004171)	polr2b (ENSCLMG00005004173)	TBC1D9B (ENSCLMG00005004189)	ENSCLMG00005006059	rnf130 (ENSCLMG00005006060)	F2RL3 (ENSCLMG00005006074)
Stickleback	MODERN SPECIES	3	SLC49A3 (ENSGACG00000016791)	PCGF3 (ENSGACG00000016794)	CPLX1 (ENSGACG00000016796)	SMU1 (ENSGACG00000016798)	ELP1 (ENSGACG00000016803)	ENSGACG00000016808	ENSGACG00000016810	pde6a (ENSGACG00000016811)	SLC26A2 (ENSGACG00000016814)	HTR4 (ENSGACG00000016819)	lman2 (ENSGACG00000016821)	FAT2 (ENSGACG00000016824) #19	mtnr1al (ENSGACG00000016828)	SLC36A1 (ENSGACG00000016829) #18	sparc (ENSGACG00000016847) #20	g3bp1 (ENSGACG00000016848) #22	glra1 (ENSGACG00000016854) #23	slc25a48 (ENSGACG00000016856)	ENSGACG00000016859	ENSGACG00000016862	ENSGACG00000016868	NFKB1 (ENSGACG00000016876)	DGKQ (ENSGACG00000016877)	mgat4b (ENSGACG00000016886)	canx (ENSGACG00000016892)	MAML1 (ENSGACG00000016896)	LTC4S (ENSGACG00000016900)	ENSGACG00000016901	ENSGACG00000016902	rom1b (ENSGACG00000016903)	ccdc88b (ENSGACG00000016915)
Pinecone sodierfish	MODERN SPECIES	1	CPLX1 (ENSMMDG00005011868)	ENSMMDG00005011872	SMU1 (ENSMMDG00005011879)	CPXM1 (ENSMMDG00005011930)	ARHGEF37 (ENSMMDG00005012737)	ENSMMDG00005012739	pde6a (ENSMMDG00005012744)	SLC26A2 (ENSMMDG00005012752)	HTR4 (ENSMMDG00005012756)	lman2 (ENSMMDG00005012932)	FAT2 (ENSMMDG00005012940) #19	mtnr1al (ENSMMDG00005012953)	SLC36A1 (ENSMMDG00005012958) #18	atox1 (ENSMMDG00005012967)	sparc (ENSMMDG00005012973) #20	g3bp1 (ENSMMDG00005013234) #22	glra1 (ENSMMDG00005013250) #23	slc25a48 (ENSMMDG00005013280)	cplx2 (ENSMMDG00005013282)	thoc3 (ENSMMDG00005013283)	ENSMMDG00005013284	ccna2 (ENSMMDG00005013287)	anxa5a (ENSMMDG00005013290)	ENSMMDG00005013434	fgfbp2a (ENSMMDG00005013435)	prom1a (ENSMMDG00005013439)	TAPT1 (ENSMMDG00005013440)	ldb2a (ENSMMDG00005013444)	qdpra (ENSMMDG00005013561)	ENSMMDG00005013563	fstl5 (ENSMMDG00005013565)
Cod	MODERN SPECIES	1	spon2b (ENSGMOG00000028338)	ENSGMOG00000017156	ENSGMOG00000025445	fgfrl1a (ENSGMOG00000023341)	ENSGMOG00000018735	ENSGMOG00000034466	ENSGMOG00000032320	ENSGMOG00000030450	ENSGMOG00000023439	ENSGMOG00000027232	ENSGMOG00000017306 #19	mtnr1al (ENSGMOG00000017372)	ENSGMOG00000027688 #18	atox1 (ENSGMOG00000023345)	sparc (ENSGMOG00000019341) #20	g3bp1 (ENSGMOG00000019345) #22	glra1 (ENSGMOG00000015249) #23	slc25a48 (ENSGMOG00000019144)	ENSGMOG00000019154	ENSGMOG00000019136	ENSGMOG00000037214	ENSGMOG00000014209	ENSGMOG00000034137	SLC26A2 (ENSGMOG00000013680)	pde6a (ENSGMOG00000013630)	ENSGMOG00000030539	ARHGEF37 (ENSGMOG00000014487)	ENSGMOG00000026293	ENSGMOG00000024289	ENSGMOG00000019046	ENSGMOG00000005071
Protacanthopterygii	ANCESTRAL SPECIES	62	ENSGT00940000159349.f	ENSGT00940000159591	ENSGT00940000159349.e.a	ENSGT00940000158355	ENSGT00940000159747	ENSGT00940000157712	ENSGT00980000203236	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047.d #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00940000153899.a.a	ENSGT01030000235165	ENSGT00390000017284.b	ENSGT00940000153322.B.d.a	ENSGT00940000167363	ENSGT00940000158869	ENSGT00940000164810	ENSGT00530000063860.a	ENSGT00940000155437	ENSGT00940000157743
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	541								ENSGT00950000183026.A.a.b.c #14	ENSGT00390000003288.r #15	ENSGT00940000158507.e #19	ENSGT00940000165176	ENSGT00940000156583.i #18	ENSGT00940000163780.q	ENSGT00940000163780.r.b.b	ENSGT00510000046787.e.b.k #20	ENSGT00390000011365.a.mc #22	ENSGT00940000159047.d #23	ENSGT00940000159354.f	ENSGT00950000182938.b.b.a.c.a	ENSGT00980000198740	ENSGT00940000153899.a.a.k	ENSGT01030000235165.c	ENSGT00390000017284.b.h	ENSGT00940000153322.B.d.a.n	ENSGT00940000167363.f
Huchen	MODERN SPECIES	2837													ENSHHUG00000017503 #18	atox1 (ENSHHUG00000017493)	sparc (ENSHHUG00000017443) #20	g3bp1 (ENSHHUG00000017427) #22
Salmoninae_a	ANCESTRAL SPECIES	106	ENSGT00940000155027.c.a.e	ENSGT00940000159591	ENSGT00940000159349.e.a.a	ENSGT00940000158355.d	ENSGT00940000159747.a	ENSGT00940000157712.e	ENSGT00940000154361.B.j	ENSGT00940000157425.A.d	ENSGT00950000183026.A.a.b.c #14	ENSGT00390000003288.r #15	ENSGT00940000158507.e #19	ENSGT00940000165176	ENSGT00940000156583.i #18	ENSGT00940000163780.q	ENSGT00510000046787.e.b.k #20	ENSGT00390000011365.a.mc #22	ENSGT00940000159047.d.d #23	ENSGT00940000159354.e.a	ENSGT00950000182938.b.b.a.c.b	ENSGT00940000158129.b	ENSGT00510000048167.b.b.d.b	ENSGT00940000153899.a.a.l	ENSGT01030000235165.d	ENSGT00390000017284.b.g	ENSGT00940000153322.B.d.a.m	ENSGT00940000167363.e	ENSGT00940000158869.a	ENSGT00940000164810.g	ENSGT00940000164810.h.a	ENSGT00530000063860.a.g	ENSGT00940000155437
Salmo	ANCESTRAL SPECIES	83	ENSGT00390000014889.a.b	ENSGT00940000155027.c.a.e	ENSGT00940000159591	ENSGT00940000159349.e.a.a	ENSGT00940000158355.d	ENSGT00940000159747.a	ENSGT00940000157712.e	ENSGT00940000157425.A.d	ENSGT00950000183026.A.a.b.c #14	ENSGT00390000003288.r #15	ENSGT00940000158507.e #19	ENSGT00940000165176	ENSGT00940000156583.i #18	ENSGT00940000163780.q	ENSGT00510000046787.e.b.k #20	ENSGT00390000011365.a.mc #22	ENSGT00940000159047.d.d #23	ENSGT00940000159354.e.a	ENSGT00950000182938.b.b.a.c.b	ENSGT00940000158129.b	ENSGT00510000048167.b.b.d.b	ENSGT00940000153899.a.a.l	ENSGT01030000235165.d	ENSGT00390000017284.b.g	ENSGT00940000153322.B.d.a.m	ENSGT00940000167363.e	ENSGT00940000158869.a	ENSGT00940000164810.g	ENSGT00530000063860.a.g	ENSGT00940000155437.d	ENSGT00940000157743.j
Atlantic salmon	MODERN SPECIES	28	ENSSSAG00000086092	ENSSSAG00000094670	ENSSSAG00000054516	lman2 (ENSSSAG00000054557)	tmed9 (ENSSSAG00000055910)	b4galt7 (ENSSSAG00000101763)	emx3 (ENSSSAG00000056011)	ENSSSAG00000056013 #14	ENSSSAG00000058137 #15	ENSSSAG00000057688 #19	mtnr1al (ENSSSAG00000057613)	ENSSSAG00000110716	ENSSSAG00000056413 #18	atox1 (ENSSSAG00000056380)	sparc (ENSSSAG00000056353) #20	g3bp1 (ENSSSAG00000056267) #22	glra1 (ENSSSAG00000091268) #23	ENSSSAG00000056251	ENSSSAG00000056240	slc25a48 (ENSSSAG00000056016)	cplx2 (ENSSSAG00000093686)	thoc3 (ENSSSAG00000103068)	ENSSSAG00000059184	ENSSSAG00000059207	ENSSSAG00000059228	ENSSSAG00000059250	ENSSSAG00000059242	ENSSSAG00000096288	ENSSSAG00000059339	ENSSSAG00000060766	tgfbi (ENSSSAG00000060852)
River trout	MODERN SPECIES	4	si:ch1073-44g3.1 (ENSSTUG00000019646)	ENSSTUG00000019657	C1QTNF2 (ENSSTUG00000019799)	ENSSTUG00000019805	lman2 (ENSSTUG00000019838)	tmed9 (ENSSTUG00000020422)	b4galt7 (ENSSTUG00000020461)	emx3 (ENSSTUG00000020477)	ENSSTUG00000020484 #14	GM2A (ENSSTUG00000020493) #15	FAT2 (ENSSTUG00000020518) #19	ENSSTUG00000020993	mtnr1al (ENSSTUG00000020997)	atox1 (ENSSTUG00000021006)	sparc (ENSSTUG00000021031) #20	g3bp1 (ENSSTUG00000021081) #22	glra1 (ENSSTUG00000021157) #23	slc25a48 (ENSSTUG00000021541)	cplx2 (ENSSTUG00000021551)	thoc3 (ENSSTUG00000021570)	ENSSTUG00000021583	tmem216 (ENSSTUG00000021623)	ENSSTUG00000021653	ENSSTUG00000021721	ENSSTUG00000021738	neurog1 (ENSSTUG00000021756)	ENSSTUG00000021789	ENSSTUG00000022464	tgfbi (ENSSTUG00000022473)	smad5 (ENSSTUG00000022608)	syvn1 (ENSSTUG00000022675)
Oncorhynchus	ANCESTRAL SPECIES	34	ENSGT00940000155027.c.a.e	ENSGT00940000159591	ENSGT00940000159349.e.a.a	ENSGT00940000158355.d	ENSGT00940000159747.a	ENSGT00940000157712.e	ENSGT00940000154361.B.j	ENSGT00940000157425.A.d	ENSGT00950000183026.A.a.b.c #14	ENSGT00390000003288.r #15	ENSGT00940000158507.e #19	ENSGT00940000165176	ENSGT00940000156583.i #18	ENSGT00940000163780.q	ENSGT00510000046787.e.b.k #20	ENSGT00390000011365.a.mc #22	ENSGT00940000159354.f.b	ENSGT00950000182938.b.b.a.c.b	ENSGT00940000158129.b	ENSGT00510000048167.b.b.d.b	ENSGT00980000203039	ENSGT01030000235165.d	ENSGT00390000017284.b.g	ENSGT00940000153322.B.d.a.m	ENSGT00940000167363.e	ENSGT00940000158869.a	ENSGT00940000164810.h.a	ENSGT00530000063860.a.g	ENSGT00940000155437.e	ENSGT00940000157743.j	ENSGT00940000176927
Rainbow trout	MODERN SPECIES	23	si:ch1073-44g3.1 (ENSOMYG00000036774)	ENSOMYG00000036216	ENSOMYG00000036467	ENSOMYG00000056771	lman2 (ENSOMYG00000036416)	tmed9 (ENSOMYG00000036394)	b4galt7 (ENSOMYG00000039226)	emx3 (ENSOMYG00000036366)	ENSOMYG00000036362	ENSOMYG00000073106	ENSOMYG00000037044 #14	ENSOMYG00000037065 #19	mtnr1al (ENSOMYG00000037085)	ENSOMYG00000037101 #18	atox1 (ENSOMYG00000048496)	sparc (ENSOMYG00000037174) #22	ENSOMYG00000077196	glra1 (ENSOMYG00000037245) #23	slc25a48 (ENSOMYG00000036335)	cplx2 (ENSOMYG00000036325)	thoc3 (ENSOMYG00000036307)	ENSOMYG00000036293	ENSOMYG00000036281	ENSOMYG00000036257	ENSOMYG00000036249	ENSOMYG00000036237	ENSOMYG00000069760	ENSOMYG00000035510	ENSOMYG00000035477	ENSOMYG00000051888	tgfbi (ENSOMYG00000035374)
Oncorhynchus_a	ANCESTRAL SPECIES	34	ENSGT00940000155027.c.a.e	ENSGT00940000159591	ENSGT00940000159349.e.a.a	ENSGT00940000158355.d	ENSGT00940000159747.a	ENSGT00940000157712.e	ENSGT00940000154361.B.j	ENSGT00940000157425.A.d	ENSGT00950000183026.A.a.b.c #14	ENSGT00390000003288.r #15	ENSGT00940000158507.e #19	ENSGT00940000165176	ENSGT00940000156583.i #18	ENSGT00940000163780.q	ENSGT00510000046787.e.b.k #20	ENSGT00390000011365.a.mc #22	ENSGT00940000159354.f.b	ENSGT00950000182938.b.b.a.c.b	ENSGT00940000158129.b	ENSGT00510000048167.b.b.d.b	ENSGT00980000203039	ENSGT01030000235165.d	ENSGT00390000017284.b.g	ENSGT00940000153322.B.d.a.m	ENSGT00940000167363.e	ENSGT00940000158869.a	ENSGT00940000164810.h.a	ENSGT00530000063860.a.g	ENSGT00940000155437.e	ENSGT00940000157743.j	ENSGT00940000176927
Coho salmon	MODERN SPECIES	6	si:ch1073-44g3.1 (ENSOKIG00005024034)	ENSOKIG00005023014	C1QTNF2 (ENSOKIG00005022952)	ENSOKIG00005022940	lman2 (ENSOKIG00005022408)	tmed9 (ENSOKIG00005022363)	b4galt7 (ENSOKIG00005022348)	ENSOKIG00005022328	emx3 (ENSOKIG00005022326)	ENSOKIG00005022305 #14	FAT2 (ENSOKIG00005021921) #19	mtnr1al (ENSOKIG00005021819)	ENSOKIG00005021729 #18	atox1 (ENSOKIG00005021709)	sparc (ENSOKIG00005021660) #20	g3bp1 (ENSOKIG00005021535) #22	glra1 (ENSOKIG00005020449) #23	slc25a48 (ENSOKIG00005020372)	ENSOKIG00005020364	cplx2 (ENSOKIG00005042780)	thoc3 (ENSOKIG00005042690)	ENSOKIG00005042614	ENSOKIG00005042588	ENSOKIG00005042552	ENSOKIG00005042531	ENSOKIG00005042505	ENSOKIG00005042496	ENSOKIG00005041681	ENSOKIG00005041625	tgfbi (ENSOKIG00005041318)	smad5 (ENSOKIG00005041244)
Chinook salmon	MODERN SPECIES	32	emx3 (ENSOTSG00005001356)	ENSOTSG00005001358	b4galt7 (ENSOTSG00005001359)	tmed9 (ENSOTSG00005001362)	lman2 (ENSOTSG00005001385)	C1QTNF2 (ENSOTSG00005002328)	ENSOTSG00005002336	si:ch1073-44g3.1 (ENSOTSG00005002343)	ENSOTSG00005002354	ENSOTSG00005002499	sfxn1 (ENSOTSG00005002500)	FAT2 (ENSOTSG00005002506) #19	mtnr1al (ENSOTSG00005002521)	atox1 (ENSOTSG00005002534)	sparc (ENSOTSG00005002539) #20	g3bp1 (ENSOTSG00005002560) #22	slc25a48 (ENSOTSG00005002572)	slc6a3 (ENSOTSG00005002586)	fut11 (ENSOTSG00005002603)	RAB9B (ENSOTSG00005002611)	plp1a (ENSOTSG00005002628)	ENSOTSG00005002630	ENSOTSG00005002631	ENSOTSG00005002633	asb12b (ENSOTSG00005002637)	STAG2 (ENSOTSG00005002639)	xiap (ENSOTSG00005002643)	ENSOTSG00005002645	nek12 (ENSOTSG00005002648)	DRD1 (ENSOTSG00005002652)	msx2a (ENSOTSG00005002661)
Salmoninae	ANCESTRAL SPECIES	293	ENSGT00390000014889.a.a	ENSGT00940000155027.c.a.f	ENSGT00390000002292.b	ENSGT00940000159349.e.a.b	ENSGT00940000158355.c	ENSGT00940000159747.b	ENSGT00940000157712.f	ENSGT00980000203236	ENSGT00940000157425.A.c	ENSGT00950000183026.A.a.b.d #14	ENSGT00390000003288.q #15	ENSGT00940000158507.f #19	ENSGT00940000156583.j #18	ENSGT00940000163780.r.b.a	ENSGT00510000046787.e.b.l #20	ENSGT00390000011365.a.nc #22
Salmoninae_a	ANCESTRAL SPECIES	18	ENSGT00390000014889.a.a	ENSGT00940000155027.c.a.f	ENSGT00390000002292.b	ENSGT00940000159349.e.a.b	ENSGT00940000158355.c	ENSGT00940000159747.b	ENSGT00940000157712.f	ENSGT00940000157425.A.c	ENSGT00950000183026.A.a.b.d #14	ENSGT00390000003288.q #15	ENSGT00940000158507.f #19	ENSGT00940000156583.j #18	ENSGT00940000163780.r.b.a	ENSGT00940000163780.r.a	ENSGT00510000046787.e.b.l #20	ENSGT00390000011365.a.nc #22	ENSGT00940000159047.d.c #23	ENSGT00940000159354.f	ENSGT00950000182938.b.b.a.c.a	ENSGT00940000158129.a	ENSGT00510000048167.b.b.c	ENSGT00940000153899.a.a.k	ENSGT01030000235165.c	ENSGT00390000017284.b.h	ENSGT00940000153322.B.d.a.n	ENSGT00940000167363.f	ENSGT00940000158869.b	ENSGT00940000164810.h.b	ENSGT00530000063860.a.h	ENSGT00940000157743.i	ENSGT00940000153986.b.b
Salmo	ANCESTRAL SPECIES	24	ENSGT00390000014889.a.a	ENSGT00940000155027.c.a.f	ENSGT00390000002292.b	ENSGT00940000159349.e.a.b	ENSGT00940000158355.c	ENSGT00940000159747.b	ENSGT00940000157712.f	ENSGT01100000264172.a	ENSGT00940000157425.A.c	ENSGT00950000183026.A.a.b.d #14	ENSGT00390000003288.q #15	ENSGT00940000158507.f #19	ENSGT00940000156583.j #18	ENSGT00940000163780.r.b.a	ENSGT00510000046787.e.b.l #20	ENSGT00390000011365.a.nc #22	ENSGT00940000159047.d.c #23	ENSGT00940000159354.e.b	ENSGT00950000182938.b.b.a.c.a	ENSGT00940000158129.a	ENSGT00510000048167.b.b.c	ENSGT00940000153899.a.a.k	ENSGT01030000235165.c	ENSGT00390000017284.b.h	ENSGT00940000153322.B.d.a.n	ENSGT00940000167363.f	ENSGT00940000158869.b	ENSGT00940000164810.h.b	ENSGT00530000063860.a.h	ENSGT00940000155437.c	ENSGT00940000157743.i
Atlantic salmon	MODERN SPECIES	24	si:ch1073-44g3.1 (ENSSSAG00000042224)	ENSSSAG00000119037	ENSSSAG00000040045	ENSSSAG00000085688	lman2 (ENSSSAG00000038386)	tmed9 (ENSSSAG00000088667)	b4galt7 (ENSSSAG00000037414)	ENSSSAG00000113604	emx3 (ENSSSAG00000065687)	ENSSSAG00000065684 #14	GM2A (ENSSSAG00000065677) #15	ENSSSAG00000058979 #19	ENSSSAG00000065551 #18	atox1 (ENSSSAG00000065598)	SPRC (ENSSSAG00000065629) #20	g3bp1 (ENSSSAG00000065650) #22	glra1 (ENSSSAG00000056038) #23	slc25a48 (ENSSSAG00000057879)	cplx2 (ENSSSAG00000116623)	thoc3 (ENSSSAG00000059154)	ENSSSAG00000057032	ENSSSAG00000057856	ENSSSAG00000057017	ENSSSAG00000056994	ENSSSAG00000120114	ENSSSAG00000056934	ENSSSAG00000056927	tgfbi (ENSSSAG00000056908)	smad5 (ENSSSAG00000007804)	syvn1 (ENSSSAG00000056450)	gpr137 (ENSSSAG00000056441)
River trout	MODERN SPECIES	22	si:ch1073-44g3.1 (ENSSTUG00000003074)	ENSSTUG00000002382	slu7 (ENSSTUG00000001922)	CCNJL (ENSSTUG00000001877)	lman2 (ENSSTUG00000001754)	tmed9 (ENSSTUG00000001712)	b4galt7 (ENSSTUG00000001689)	ENSSTUG00000001680	emx3 (ENSSTUG00000001674)	ENSSTUG00000001660 #14	GM2A (ENSSTUG00000001642) #15	FAT2 (ENSSTUG00000001389) #19	SLC36A1 (ENSSTUG00000001267) #18	atox1 (ENSSTUG00000001241)	sparc (ENSSTUG00000001233) #20	g3bp1 (ENSSTUG00000001178) #22	glra1 (ENSSTUG00000000944) #23	slc25a48 (ENSSTUG00000000920)	cplx2 (ENSSTUG00000000916)	thoc3 (ENSSTUG00000000911)	ENSSTUG00000000903	tmem216 (ENSSTUG00000000899)	ENSSTUG00000000887	ENSSTUG00000000881	ENSSTUG00000000869	neurog1 (ENSSTUG00000000862)	ENSSTUG00000000466	ENSSTUG00000000391	tgfbi (ENSSTUG00000000369)	smad5 (ENSSTUG00000000343)	syvn1 (ENSSTUG00000000325)
Oncorhynchus	ANCESTRAL SPECIES	45	ENSGT00550000074618.a.a.lb.a.d	ENSGT00390000014889.a.a	ENSGT00940000155027.c.a.f	ENSGT00390000002292.b	ENSGT00940000159349.e.a.b	ENSGT00940000158355.c	ENSGT00940000159747.b	ENSGT00940000157712.f	ENSGT00940000157425.A.c	ENSGT00950000183026.A.a.b.d #14	ENSGT00390000003288.q #15	ENSGT00940000158507.f #19	ENSGT00940000156583.j #18	ENSGT00940000163780.r.a	ENSGT00510000046787.e.b.l #20	ENSGT00390000011365.a.nc #22	ENSGT00940000159047.d.c #23	ENSGT00940000159354.f.a	ENSGT00950000182938.b.b.a.c.a	ENSGT00940000158129.a	ENSGT00510000048167.b.b.d.a	ENSGT00940000153899.a.a.l	ENSGT01030000235165.c	ENSGT00390000017284.b.h	ENSGT00940000153322.B.d.a.n	ENSGT00940000167363.f	ENSGT00940000158869.b	ENSGT00940000164810.h.b	ENSGT00530000063860.a.h	ENSGT00940000155437.f	ENSGT00940000157743.i
Oncorhynchus_a	ANCESTRAL SPECIES	46	ENSGT00550000074618.a.a.lb.a.d	ENSGT00390000014889.a.a	ENSGT00940000155027.c.a.f	ENSGT00390000002292.b	ENSGT00940000159349.e.a.b	ENSGT00940000158355.c	ENSGT00940000159747.b	ENSGT00940000157712.f	ENSGT00940000157425.A.c	ENSGT00950000183026.A.a.b.d #14	ENSGT00390000003288.q #15	ENSGT00940000158507.f #19	ENSGT00940000156583.j #18	ENSGT00940000163780.r.a	ENSGT00510000046787.e.b.l #20	ENSGT00390000011365.a.nc #22	ENSGT00940000159047.d.c #23	ENSGT00940000159354.f.a	ENSGT00950000182938.b.b.a.c.a	ENSGT00510000048167.b.b.d.a	ENSGT00940000153899.a.a.l	ENSGT01030000235165.c	ENSGT00390000017284.b.h	ENSGT00940000153322.B.d.a.n	ENSGT00940000167363.f	ENSGT00940000158869.b	ENSGT00940000164810.h.b	ENSGT00530000063860.a.h	ENSGT00940000155437.f	ENSGT00940000157743.i	ENSGT00940000153986.b.b
Coho salmon	MODERN SPECIES	10	ppp2caa (ENSOKIG00005012858)	si:ch1073-44g3.1 (ENSOKIG00005012887)	ENSOKIG00005012898	slu7 (ENSOKIG00005012947)	ENSOKIG00005013382	lman2 (ENSOKIG00005013403)	tmed9 (ENSOKIG00005013533)	b4galt7 (ENSOKIG00005013560)	emx3 (ENSOKIG00005013591)	ENSOKIG00005013602 #14	gm2a (ENSOKIG00005013616) #15	FAT2 (ENSOKIG00005013687) #19	SLC36A1 (ENSOKIG00005014354) #18	atox1 (ENSOKIG00005014456)	sparc (ENSOKIG00005014473) #20	g3bp1 (ENSOKIG00005014488) #22	glra1 (ENSOKIG00005014573) #23	slc25a48 (ENSOKIG00005015603)	cplx2 (ENSOKIG00005015629)	thoc3 (ENSOKIG00005015661)	ENSOKIG00005015694	ENSOKIG00005015708	ENSOKIG00005015726	ENSOKIG00005015746	ENSOKIG00005015765	neurog1 (ENSOKIG00005015798)	ARAP3 (ENSOKIG00005015889)	ENSOKIG00005017394	ENSOKIG00005017399	tgfbi (ENSOKIG00005017437)	smad5 (ENSOKIG00005017599)
Chinook salmon	MODERN SPECIES	13	ENSOTSG00005015300	klhl4 (ENSOTSG00005015297)	ENSOTSG00005015294	ENSOTSG00005015295	ENSOTSG00005015292	TSC22D3 (ENSOTSG00005015290)	ENSOTSG00005015289	lman2 (ENSOTSG00005014403)	b4galt7 (ENSOTSG00005014392)	emx3 (ENSOTSG00005014391)	ENSOTSG00005014390 #14	GM2A (ENSOTSG00005014386) #15	SLC36A1 (ENSOTSG00005014384) #18	atox1 (ENSOTSG00005014382)	sparc (ENSOTSG00005014368) #20	g3bp1 (ENSOTSG00005014347) #22	glra1 (ENSOTSG00005014344) #23	neurog1 (ENSOTSG00005014342)	ENSOTSG00005014340	ENSOTSG00005014338	ENSOTSG00005014336	tmem216 (ENSOTSG00005014335)	ENSOTSG00005014334	cplx2 (ENSOTSG00005014333)	slc25a48 (ENSOTSG00005014332)	ENSOTSG00005014331	tiparp (ENSOTSG00005014330)	ENSOTSG00005014329	ENSOTSG00005014328	slu7 (ENSOTSG00005014326)	si:ch1073-44g3.1 (ENSOTSG00005014322)
Rainbow trout	MODERN SPECIES	5	ENSOMYG00000030168	ENSOMYG00000075545	ENSOMYG00000068282	lman2 (ENSOMYG00000025433)	tmed9 (ENSOMYG00000025469)	b4galt7 (ENSOMYG00000025499)	emx3 (ENSOMYG00000031752)	ENSOMYG00000069999 #14	ENSOMYG00000053482	gm2a (ENSOMYG00000037055) #15	ENSOMYG00000036397 #19	ENSOMYG00000036151 #18	ENSOMYG00000061934	atox1 (ENSOMYG00000036135)	sparc (ENSOMYG00000036119) #20	g3bp1 (ENSOMYG00000036089) #22	glra1 (ENSOMYG00000036027) #23	slc25a48 (ENSOMYG00000035875)	cplx2 (ENSOMYG00000035885)	ENSOMYG00000035888	thoc3 (ENSOMYG00000035896)	ENSOMYG00000035911	ENSOMYG00000035919	ENSOMYG00000035939	ENSOMYG00000035953	ENSOMYG00000035966	ENSOMYG00000037557	ENSOMYG00000035704	ENSOMYG00000053281	ENSOMYG00000063892	ENSOMYG00000076414
Huchen	MODERN SPECIES	2827												ENSHHUG00000013481	SLC36A1 (ENSHHUG00000013497) #18	atox1 (ENSHHUG00000013507)	sparc (ENSHHUG00000013540) #20	g3bp1 (ENSHHUG00000013564) #22
Northern pike	MODERN SPECIES	3	C1QTNF2 (ENSELUG00000022594)	CCNJL (ENSELUG00000022574)	lman2 (ENSELUG00000022557)	tmed9 (ENSELUG00000022505)	b4galt7 (ENSELUG00000022441)	ENSELUG00000022401	emx3 (ENSELUG00000022399)	ENSELUG00000022391 #14	GM2A (ENSELUG00000022382) #15	ENSELUG00000022351 #15	FAT2 (ENSELUG00000022305) #19	mtnr1al (ENSELUG00000022299)	SLC36A1 (ENSELUG00000022288) #18	atox1 (ENSELUG00000022270)	sparc (ENSELUG00000022226) #20	g3bp1 (ENSELUG00000022200) #22	glra1 (ENSELUG00000022153) #23	slc25a48 (ENSELUG00000022095)	cplx2 (ENSELUG00000022073)	thoc3 (ENSELUG00000022058)	ENSELUG00000022031	tmem216 (ENSELUG00000026963)	ENSELUG00000022000	aldh9a1a.1 (ENSELUG00000021907)	paip2 (ENSELUG00000021874)	ENSELUG00000021848	ENSELUG00000025634	ENSELUG00000029446	neurog1 (ENSELUG00000021772)	ARAP3 (ENSELUG00000021754)	ENSELUG00000021726
Osteoglossiformes	ANCESTRAL SPECIES	52									ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000158507 #19	ENSGT00940000165176	ENSGT00940000156583 #18	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00940000153899.a.a	ENSGT00940000153322.B.d.a.u	ENSGT00940000153322.B.d.a.v	ENSGT00390000017284.b	ENSGT00940000162170	ENSGT00940000158869	ENSGT00940000164810	ENSGT00530000063860.a	ENSGT00940000155437	ENSGT00940000157743
P. kingsleyae	MODERN SPECIES	56	ENSPKIG00000022179	zgc:85858 (ENSPKIG00000022187)	srrt (ENSPKIG00000022212)	ENSPKIG00000022278	KCTD11 (ENSPKIG00000022337)	ENSPKIG00000022351	ENSPKIG00000022369 #14	gm2a (ENSPKIG00000022390) #15	FAT2 (ENSPKIG00000022412) #19	mtnr1al (ENSPKIG00000022446)	SLC36A1 (ENSPKIG00000022467) #18	ENSPKIG00000022500	ENSPKIG00000022511	atox1 (ENSPKIG00000022528)	sparc (ENSPKIG00000022543) #20	g3bp1 (ENSPKIG00000022556) #22	glra1 (ENSPKIG00000022617) #23	ENSPKIG00000022671	slc25a48 (ENSPKIG00000000162)	cplx2 (ENSPKIG00000000187)	thoc3 (ENSPKIG00000000208)	ENSPKIG00000000242	tmem216 (ENSPKIG00000000272)	ENSPKIG00000000293	ENSPKIG00000000333	ENSPKIG00000000367	NEUROG1 (ENSPKIG00000000377)	ARAP3 (ENSPKIG00000000421)	ENSPKIG00000000534	tgfbi (ENSPKIG00000000568)	smad5 (ENSPKIG00000000713)
Asian bonytongue	MODERN SPECIES	4	HNRNPA0 (ENSSFOG00015025597)	HNRNPA0 (ENSSFOG00015029213)	spdl1 (ENSSFOG00015002583)	ENSSFOG00015027544	ENSSFOG00015002569	csnk1a1 (ENSSFOG00015002502)	FBXO38 (ENSSFOG00015002400)	fgfrl1b (ENSSFOG00015002361)	hspa9 (ENSSFOG00015002266)	gm2a (ENSSFOG00015002248) #15	FAT2 (ENSSFOG00015002166) #19	mtnr1al (ENSSFOG00015002133)	SLC36A1 (ENSSFOG00015030401) #18	atox1 (ENSSFOG00015032700)	sparc (ENSSFOG00015002054) #20	g3bp1 (ENSSFOG00015001993) #22	glra1 (ENSSFOG00015033192) #23	slc25a48 (ENSSFOG00015001917)	cplx2 (ENSSFOG00015001898)	thoc3 (ENSSFOG00015001867)	ENSSFOG00015025339	tmem216 (ENSSFOG00015001846)	ENSSFOG00015001824	ENSSFOG00015027205	ENSSFOG00015026121	NEUROG1 (ENSSFOG00015001781)	ARAP3 (ENSSFOG00015001516)	ENSSFOG00015031999	tgfbi (ENSSFOG00015001411)	smad5 (ENSSFOG00015001384)	syvn1 (ENSSFOG00015001279)
Spotted gar	MODERN SPECIES	672	ENSLOCG00000018310	dctn4 (ENSLOCG00000011815)	gpx3 (ENSLOCG00000011804)	tnip1 (ENSLOCG00000011786) #12	anxa6 (ENSLOCG00000011765) #13	zgc:175280 (ENSLOCG00000011752)	ENSLOCG00000011745	CCDC69 (ENSLOCG00000011732) #14	ENSLOCG00000011724 #15	gm2a (ENSLOCG00000011710) #15	FAT2 (ENSLOCG00000011694) #19	mtnr1al (ENSLOCG00000011690)	SLC36A1 (ENSLOCG00000011680) #18	atox1 (ENSLOCG00000011673)	sparc (ENSLOCG00000011666) #20	g3bp1 (ENSLOCG00000011657) #22	glra1 (ENSLOCG00000011646) #23	slc25a48 (ENSLOCG00000011632)	cplx2 (ENSLOCG00000011618)	thoc3 (ENSLOCG00000011610)	ENSLOCG00000011605	ENSLOCG00000011597	ENSLOCG00000011587	ENSLOCG00000011570	ENSLOCG00000011563	NEUROG1 (ENSLOCG00000011560)	ENSLOCG00000011550	ARAP3 (ENSLOCG00000011534)	ENSLOCG00000011527	tgfbi (ENSLOCG00000011520)	smad5 (ENSLOCG00000011514)
Reedfish	MODERN SPECIES	2													SLC36A1 (ENSECRG00000011396) #18	atox1 (ENSECRG00000011415)	sparc (ENSECRG00000011430) #20	g3bp1 (ENSECRG00000011454) #22	glra1 (ENSECRG00000011489) #23	slc25a48 (ENSECRG00000011527)	ENSECRG00000011543	thoc3 (ENSECRG00000011561)	ENSECRG00000011577	ENSECRG00000011603	ENSECRG00000011646	ENSECRG00000011671	ENSECRG00000011704	ENSECRG00000011739	ENSECRG00000011764	NEUROG1 (ENSECRG00000011773)	ENSECRG00000011786	ENSECRG00000011807	ENSECRG00000011855
Elephant shark	MODERN SPECIES	1577	RAD50 (ENSCMIG00000017859)	kif3a (ENSCMIG00000017930)	pou4f3 (ENSCMIG00000018027)	RBM27 (ENSCMIG00000000206)	ndfip1l (ENSCMIG00000000310)	fgf1 (ENSCMIG00000000315)	ENSCMIG00000000373	ENSCMIG00000000380	ENSCMIG00000000388 #14	GM2A (ENSCMIG00000000397) #15	SLC36A1 (ENSCMIG00000000413) #18	ENSCMIG00000000460	FAT2 (ENSCMIG00000000471) #19	ENSCMIG00000000490	sparc (ENSCMIG00000000506) #20	g3bp1 (ENSCMIG00000000548) #22	glra1 (ENSCMIG00000000617) #23	GRXCR2 (ENSCMIG00000000746)	ENSCMIG00000000757	ENSCMIG00000000760	LARS1 (ENSCMIG00000000911)	ENSCMIG00000001460	ENSCMIG00000001471	ENSCMIG00000001476	ENSCMIG00000001503	TENM2 (ENSCMIG00000001579)	WWC1 (ENSCMIG00000001688)	ENSCMIG00000001935
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00390000011365.a #22
Lamprey	MODERN SPECIES	5199																ENSPMAG00000005131 #22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00390000011365.b ##22
Gnathostomata	ANCESTRAL SPECIES	1362																ENSGT00390000011365.b ##22	ENSGT00940000160368
Elephant shark	MODERN SPECIES	1506	wdr32 (ENSCMIG00000015495)	si:ch211-175m2.5 (ENSCMIG00000015498)	DCTN6 (ENSCMIG00000015504)	gtf2e2 (ENSCMIG00000015517)	smim18 (ENSCMIG00000015522)	B4GALT1 (ENSCMIG00000015524)	zgc:92045 (ENSCMIG00000015529)	SARAF (ENSCMIG00000015541)	gsr (ENSCMIG00000015565)	ENSCMIG00000015613	mboat4 (ENSCMIG00000015615)	pkd2 (ENSCMIG00000015649)	ENSCMIG00000015684 ##20	uso1 (ENSCMIG00000015735)	ENSCMIG00000015944	g3bp2a (ENSCMIG00000015948) ##22	CDKL2 (ENSCMIG00000015974)	NPFFR2 (ENSCMIG00000015981)	tnksb (ENSCMIG00000016031)	dusp4 (ENSCMIG00000016110)	ENSCMIG00000016114	ENSCMIG00000016116	ppa2 (ENSCMIG00000016120)	ENSCMIG00000016123	CXXC4 (ENSCMIG00000016127)	ENSCMIG00000016136	exosc3 (ENSCMIG00000016146)	PIGG (ENSCMIG00000016162)	HOOK3 (ENSCMIG00000016217)	rnf170 (ENSCMIG00000016239)	ENSCMIG00000016243
Euteleostomi	ANCESTRAL SPECIES	43	ENSGT00950000185412	ENSGT00940000165034	ENSGT00510000046908.a.a.a #12	ENSGT00940000158770 #13	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000156583 #18	ENSGT00940000165176	ENSGT00940000158507 #19	ENSGT00940000163780	ENSGT00510000046787.e.b #20	ENSGT00390000011365.a #22	ENSGT00940000159047 #23	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00940000159025	ENSGT00940000156633	ENSGT00940000163989.a.b	ENSGT00940000165755	ENSGT00940000158189	ENSGT00950000183033.a.b.a	ENSGT01030000234528.A.a.a	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00530000064550.A	ENSGT00940000155192	ENSGT00940000160064.b
Sarcopterygii	ANCESTRAL SPECIES	133														ENSGT00510000046787.e.a ##20	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00940000159025	ENSGT00940000156633	ENSGT00940000175002	ENSGT00940000163989.a.b	ENSGT00940000165755	ENSGT00940000158189	ENSGT00950000183033.a.b.a	ENSGT01030000234528.A.a.a	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B	ENSGT00530000064550.A	ENSGT00940000155192
Coelacanth	MODERN SPECIES	2312														ENSLACG00000007542 #20	USO1 (ENSLACG00000005570)	G3BP2 (ENSLACG00000002985) ##22	CDKL2 (ENSLACG00000000336)
Tetrapoda	ANCESTRAL SPECIES	25	ENSGT00530000064550.A	ENSGT00940000153912.B	ENSGT01030000234633.C.b	ENSGT00950000183175.B.b	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000165755	ENSGT00940000163989.a.b	ENSGT00940000175002	ENSGT00940000156633	ENSGT00940000159025	ENSGT00510000046787.e.a ##20	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT01030000235199	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000160757	ENSGT00940000159886	ENSGT00390000000113.A.d	ENSGT00390000000113.A.c	ENSGT00940000153768.a	ENSGT00530000063506.A	ENSGT00940000156085	ENSGT01070000253744.b.b
Anura	ANCESTRAL SPECIES	62												ENSGT01010000229269	ENSGT00390000018227	ENSGT00440000037826	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000160757.p.a	ENSGT00940000160757.p.b	ENSGT00940000159886	ENSGT00390000000113.A.c	ENSGT01010000230120	ENSGT00940000153768.a	ENSGT00530000063506.A	ENSGT00940000156085
Frog	MODERN SPECIES		cxcl8a.1 (ENSXETG00000044014)	cxcl2 (ENSXETG00000048587)	mthfd2l (ENSXETG00000006377)	epgn (ENSXETG00000031904)	ereg (ENSXETG00000006380)	areg (ENSXETG00000033272)	btc (ENSXETG00000006798)	ENSXETG00000047560	parm1 (ENSXETG00000037061)	ENSXETG00000044027	rchy1 (ENSXETG00000000332)	ENSXETG00000036069	ambn (ENSXETG00000000331)	enam (ENSXETG00000032124)	uso1 (ENSXETG00000000333)	g3bp2 (ENSXETG00000000334) ##22	cdkl2 (ENSXETG00000000335)	odam (ENSXETG00000033018)	dmp1 (ENSXETG00000039443)	ENSXETG00000031354	ibsp (ENSXETG00000033005)	ENSXETG00000039402	pkd2 (ENSXETG00000000338)	abcg2 (ENSXETG00000000340)	ppm1k (ENSXETG00000000341)	herc6 (ENSXETG00000000342)	rufy3 (ENSXETG00000023647)	mob1b (ENSXETG00000023648)	dck.1 (ENSXETG00000023649)	ENSXETG00000043455	jchain (ENSXETG00000034776)
Leishan spiny toad	MODERN SPECIES		ENSLLEG00000010218	PKD2 (ENSLLEG00000010255)	ENSLLEG00000010370	ENSLLEG00000010390	ENSLLEG00000010408	ENSLLEG00000010470	ENSLLEG00000010504	ENSLLEG00000010545 ##20	ENSLLEG00000010669	ENSLLEG00000010909	ENSLLEG00000011251	ENSLLEG00000011438	USO1 (ENSLLEG00000011584)	ENSLLEG00000012313	ENSLLEG00000012342	G3BP2 (ENSLLEG00000012387) ##22	ENSLLEG00000012572	CDKL2 (ENSLLEG00000012670)	ENSLLEG00000013161	ENSLLEG00000013169	PARM1 (ENSLLEG00000013179)	ENSLLEG00000013204	BTC (ENSLLEG00000013228)	AREG (ENSLLEG00000013272)	EREG (ENSLLEG00000013315)	ENSLLEG00000013356	ENSLLEG00000013377	ENSLLEG00000013403	MTHFD2L (ENSLLEG00000000045)	ENSLLEG00000000060	ENSLLEG00000000067
Amniota	ANCESTRAL SPECIES	2															ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00900000143472	ENSGT00940000160368	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000162559	ENSGT00940000160757	ENSGT00940000159886	ENSGT00390000000113.A.d
Mammalia	ANCESTRAL SPECIES	1	ENSGT00950000183003.a.a.a.a.a	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000165114	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00390000012635	ENSGT00390000010355	ENSGT00530000063548.A	ENSGT00940000178819	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00900000143472	ENSGT00940000160368	ENSGT00940000174344	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000162559	ENSGT00940000160757	ENSGT00940000159886
Theria	ANCESTRAL SPECIES	6	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00390000012635	ENSGT00530000063548.A	ENSGT00940000178819	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00900000143472	ENSGT00940000160368	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000162559	ENSGT00940000160757	ENSGT00940000159886	ENSGT00390000000113.A.d.c.b
Marsupialia	ANCESTRAL SPECIES	21	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00390000012635	ENSGT00530000063548.A.b	ENSGT00530000063548.A.a	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000162559.i	ENSGT00940000160757	ENSGT00940000159886	ENSGT00390000000113.A.d.c.a	ENSGT00390000000113.A.d.d	ENSGT00390000000113.A.c
Opossum	MODERN SPECIES	4	ENSMODG00000044944	ENSMODG00000025522	PPM1K (ENSMODG00000019241)	HERC6 (ENSMODG00000019236)	ENSMODG00000047305	ENSMODG00000019234	HERC3 (ENSMODG00000019229)	ENSMODG00000019226	ENSMODG00000025301	ENSMODG00000037266	SDAD1 (ENSMODG00000019219)	ENSMODG00000019214	ENSMODG00000025521	PPEF2 (ENSMODG00000019210)	USO1 (ENSMODG00000019208)	G3BP2 (ENSMODG00000019205) ##22	ODAPH (ENSMODG00000038613)	ENSMODG00000019201	ENSMODG00000019195	ENSMODG00000045235	AREG (ENSMODG00000019194)	EREG (ENSMODG00000019193)	EPGN (ENSMODG00000043502)	MTHFD2L (ENSMODG00000019190)	ENSMODG00000019188	ENSMODG00000019184	CXCL8 (ENSMODG00000019182)	RASSF6 (ENSMODG00000019181)	ENSMODG00000019178	AFP (ENSMODG00000025520)	ALB (ENSMODG00000019164)
Marsupialia_b	ANCESTRAL SPECIES	22	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000012635	ENSGT00390000010355	ENSGT00530000063548.A.b	ENSGT00530000063548.A.a	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233.a	ENSGT00940000162559.i	ENSGT00940000155233.b	ENSGT00940000160757	ENSGT00940000159886	ENSGT00390000000113.A.d.c.a	ENSGT00390000000113.A.d.d
Tasmanian devil	MODERN SPECIES	5	COPS4 (ENSSHAG00000007866)	PLAC8 (ENSSHAG00000007753)	ENSSHAG00000005570	ENSSHAG00000002216	ENSSHAG00000001426	ENSSHAG00000001112	NUP54 (ENSSHAG00000031110)	SCARB2 (ENSSHAG00000029530)	ENSSHAG00000004563	ENSSHAG00000029695	ENSSHAG00000003925	SDAD1 (ENSSHAG00000002745)	NAAA (ENSSHAG00000030700)	PPEF2 (ENSSHAG00000000877)	USO1 (ENSSHAG00000031120)	G3BP2 (ENSSHAG00000007414) ##22	CDKL2 (ENSSHAG00000006280)	ENSSHAG00000021765	RCHY1 (ENSSHAG00000005647)	ENSSHAG00000002382	ENSSHAG00000006150	EREG (ENSSHAG00000016899)	EPGN (ENSSHAG00000016706)	MTHFD2L (ENSSHAG00000016402)	ENSSHAG00000026326	ENSSHAG00000016139	CXCL8 (ENSSHAG00000015957)	RASSF6 (ENSSHAG00000023288)	ENSSHAG00000015253	AFP (ENSSHAG00000015116)	ALB (ENSSHAG00000015013)
Diprotodontia	ANCESTRAL SPECIES	25	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000012635	ENSGT00390000010355	ENSGT00530000063548.A.b	ENSGT00530000063548.A.a	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233.a	ENSGT00940000162559.i	ENSGT00940000160757	ENSGT00940000159886	ENSGT00390000000113.A.d.d	ENSGT00390000000113.A.c	ENSGT00940000153768.a
Diprotodontia_a	ANCESTRAL SPECIES	26	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000012635	ENSGT00390000010355	ENSGT00530000063548.A.b	ENSGT00530000063548.A.a	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233.a	ENSGT00940000162559.i	ENSGT00940000160757	ENSGT00940000159886	ENSGT00390000000113.A.d.d	ENSGT00390000000113.A.c.m	ENSGT00940000153768.a
koala	MODERN SPECIES	31	CCDC158 (ENSPCIG00000014887)	ENSPCIG00000035311	ENSPCIG00000014902	SCARB2 (ENSPCIG00000012244)	NUP54 (ENSPCIG00000007031)	ENSPCIG00000007032	ENSPCIG00000007033	ENSPCIG00000007034	ENSPCIG00000030826	SDAD1 (ENSPCIG00000014434)	ENSPCIG00000014440	ENSPCIG00000014441	NAAA (ENSPCIG00000031197)	PPEF2 (ENSPCIG00000007036)	USO1 (ENSPCIG00000007041)	G3BP2 (ENSPCIG00000007044) ##22	CDKL2 (ENSPCIG00000007045)	ENSPCIG00000007047	RCHY1 (ENSPCIG00000007048)	ENSPCIG00000031469	ENSPCIG00000007054	EREG (ENSPCIG00000007055)	EPGN (ENSPCIG00000007056)	MTHFD2L (ENSPCIG00000012167)	ENSPCIG00000034745	ENSPCIG00000013378	ENSPCIG00000013379	CXCL8 (ENSPCIG00000007057)	RASSF6 (ENSPCIG00000007058)	AFP (ENSPCIG00000007060)	ENSPCIG00000037331
Common wonbat	MODERN SPECIES	666	CCDC158 (ENSVURG00010009996)	ENSVURG00010009991	ENSVURG00010009986	SCARB2 (ENSVURG00010009978)	NUP54 (ENSVURG00010009966)	ENSVURG00010009945	ENSVURG00010009935	ENSVURG00010009931	ENSVURG00010009926	SDAD1 (ENSVURG00010009884)	NAAA (ENSVURG00010009860)	ENSVURG00010009846	ENSVURG00010009843	PPEF2 (ENSVURG00010009823)	USO1 (ENSVURG00010009784)	G3BP2 (ENSVURG00010009758) ##22	RCHY1 (ENSVURG00010009747)	ENSVURG00010009740	ENSVURG00010009732	EREG (ENSVURG00010009728)	EPGN (ENSVURG00010009721)	MTHFD2L (ENSVURG00010009684)	ENSVURG00010009651	ENSVURG00010009643	ENSVURG00010009636	RASSF6 (ENSVURG00010009622)	AFP (ENSVURG00010009600)	ALB (ENSVURG00010009492)	ANKRD17 (ENSVURG00010009358)	COX18 (ENSVURG00010009344)	ADAMTS3 (ENSVURG00010009320)
Wallaby	MODERN SPECIES	4620																G3BP2 (ENSMEUG00000004126) ##22
Eutheria	ANCESTRAL SPECIES	2	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000012635.a.b	ENSGT00390000010355	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00900000143472	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000163368	ENSGT00940000162559	ENSGT00940000162749
Boreoeutheria	ANCESTRAL SPECIES	8	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000012635.a.b	ENSGT00390000010355	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00900000143472	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT01030000235199	ENSGT00550000076374	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000163368
Laurasiatheria	ANCESTRAL SPECIES	11	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000012635.a.b	ENSGT00390000010355	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00900000143472	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000174344	ENSGT00940000162692	ENSGT00390000008853	ENSGT00550000076374	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000163368
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000011365.b ##22
Common shrew	MODERN SPECIES	2760																G3BP2 (ENSSARG00000009503) ##22
Hedgehog	MODERN SPECIES	3659																G3BP2 (ENSEEUG00000013436) ##22
Laurasiatheria_a	ANCESTRAL SPECIES	8	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000012635.a.b	ENSGT00390000010355	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00900000143472	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00550000076374	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000163368	ENSGT00940000163986
Artiodactyla	ANCESTRAL SPECIES	12	ENSGT00950000183003.a.a.a.a.a	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00550000076374	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000163368	ENSGT00940000163986	ENSGT00940000164504
Suina	ANCESTRAL SPECIES	22	ENSGT00950000183003.a.a.a.a.a	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000163368	ENSGT00940000162559	ENSGT00940000162749	ENSGT00940000160757
Pig	MODERN SPECIES	16	CCDC158 (ENSSSCG00000008983)	ENSSSCG00000008981	FAM47E (ENSSSCG00000052738)	SCARB2 (ENSSSCG00000008980)	NUP54 (ENSSSCG00000008979)	ART3 (ENSSSCG00000008976)	CXCL11 (ENSSSCG00000008978)	ENSSSCG00000062048	CXCL10 (ENSSSCG00000032474)	CXCL9 (ENSSSCG00000032777)	SDAD1 (ENSSSCG00000008974)	NAAA (ENSSSCG00000008973)	PPEF2 (ENSSSCG00000008972)	USO1 (ENSSSCG00000008971)	ENSSSCG00000039106	G3BP2 (ENSSSCG00000022940) ##22	CDKL2 (ENSSSCG00000008970)	ODAPH (ENSSSCG00000034870)	THAP6 (ENSSSCG00000029348)	RCHY1 (ENSSSCG00000008969)	PARM1 (ENSSSCG00000008966)	BTC (ENSSSCG00000008965)	AREG (ENSSSCG00000008963)	EREG (ENSSSCG00000038185)	EPGN (ENSSSCG00000063288)	MTHFD2L (ENSSSCG00000008961)	CXCL2 (ENSSSCG00000008959)	ENSSSCG00000061605	ENSSSCG00000060276	ENSSSCG00000053058	PPBP (ENSSSCG00000037579)
Chacoan peccary	MODERN SPECIES	142	SOWAHB (ENSCWAG00000016762)	SHROOM3 (ENSCWAG00000016829)	CCDC158 (ENSCWAG00000017403)	STBD1 (ENSCWAG00000017600)	ENSCWAG00000017680	SCARB2 (ENSCWAG00000017715)	NUP54 (ENSCWAG00000017894)	ART3 (ENSCWAG00000017954)	CXCL11 (ENSCWAG00000017987)	CXCL10 (ENSCWAG00000018019)	CXCL9 (ENSCWAG00000018059)	SDAD1 (ENSCWAG00000018102)	NAAA (ENSCWAG00000018177)	PPEF2 (ENSCWAG00000018296)	USO1 (ENSCWAG00000018458)	G3BP2 (ENSCWAG00000018509) ##22	CDKL2 (ENSCWAG00000018588)	ODAPH (ENSCWAG00000018722)	THAP6 (ENSCWAG00000018749)	RCHY1 (ENSCWAG00000018818)	PARM1 (ENSCWAG00000018925)	BTC (ENSCWAG00000018962)	AREG (ENSCWAG00000018981)	EREG (ENSCWAG00000019017)	EPGN (ENSCWAG00000019050)	MTHFD2L (ENSCWAG00000019239)	CXCL1 (ENSCWAG00000019291)	ENSCWAG00000019311	PPBP (ENSCWAG00000019323)	CXCL6 (ENSCWAG00000019339)	ENSCWAG00000019368
Artiodactyla_a	ANCESTRAL SPECIES	12	ENSGT00950000183003.a.a.a.a.a	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00550000076374	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000163368	ENSGT00940000163986	ENSGT00940000164504
Camelidae	ANCESTRAL SPECIES	44	ENSGT00950000183003.a.a.a.a.a	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233.`b	ENSGT00940000155233.ab	ENSGT00940000163368	ENSGT00940000162559	ENSGT00940000163567
Arabian camel	MODERN SPECIES	11	ENSCDRG00005002004	SHROOM3 (ENSCDRG00005001979)	CCDC158 (ENSCDRG00005001945)	STBD1 (ENSCDRG00005001922)	FAM47E (ENSCDRG00005001906)	SCARB2 (ENSCDRG00005001322)	NUP54 (ENSCDRG00005001150)	ART3 (ENSCDRG00005001040)	CXCL11 (ENSCDRG00005000983)	CXCL10 (ENSCDRG00005000959)	CXCL9 (ENSCDRG00005000940)	SDAD1 (ENSCDRG00005000884)	NAAA (ENSCDRG00005000847)	PPEF2 (ENSCDRG00005000822)	USO1 (ENSCDRG00005000744)	G3BP2 (ENSCDRG00005000673) ##22	CDKL2 (ENSCDRG00005000615)	ODAPH (ENSCDRG00005000588)	THAP6 (ENSCDRG00005000540)	RCHY1 (ENSCDRG00005000410)	PARM1 (ENSCDRG00005000354)	BTC (ENSCDRG00005000328)	AREG (ENSCDRG00005000308)	EREG (ENSCDRG00005000291)	EPGN (ENSCDRG00005000181)	MTHFD2L (ENSCDRG00005000100)	ENSCDRG00005000069	ENSCDRG00005000050	ENSCDRG00005000041	PPBP (ENSCDRG00005000033)	CXCL5 (ENSCDRG00005000030)
Alpaca	MODERN SPECIES	1543															USO1 (ENSVPAG00000010711)	G3BP2 (ENSVPAG00000010710) ##22	CDKL2 (ENSVPAG00000010706)	ODAPH (ENSVPAG00000010704)	THAP6 (ENSVPAG00000010703)	RCHY1 (ENSVPAG00000010699)
Artiodactyla_b	ANCESTRAL SPECIES	16	ENSGT00950000183003.a.a.a.a.a	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00550000076374	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233.bb.a	ENSGT00940000163986	ENSGT00940000164504	ENSGT00940000163666
Cetacea	ANCESTRAL SPECIES	12	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT01000000221117	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233.bb.a	ENSGT00940000163368	ENSGT00940000163986	ENSGT00940000164504	ENSGT00940000163666
Odontoceti	ANCESTRAL SPECIES	11	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT01000000221117	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233.bb.a	ENSGT00940000163368	ENSGT00940000162559	ENSGT00940000162749	ENSGT00940000160757
Odontoceti_a	ANCESTRAL SPECIES	23	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT01000000221117	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233.bb.a	ENSGT00940000163368	ENSGT00940000162559	ENSGT00940000162749	ENSGT00940000160757
Dolphin	MODERN SPECIES	1470																G3BP2 (ENSTTRG00000013795) ##22	CDKL2 (ENSTTRG00000013792)	ODAPH (ENSTTRG00000013789)	THAP6 (ENSTTRG00000013788)	ENSTTRG00000013786
Odontoceti_b	ANCESTRAL SPECIES	11	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT01000000221117	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233.bb.a	ENSGT00940000163368	ENSGT00940000162559	ENSGT00940000162749	ENSGT00940000160757
Monodontidae	ANCESTRAL SPECIES	9	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT01000000221117	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233.bb.a	ENSGT00940000163368	ENSGT00940000162559	ENSGT00940000162749	ENSGT00940000160757
Beluga whale	MODERN SPECIES	53	CCDC158 (ENSDLEG00000015849)	STBD1 (ENSDLEG00000015838)	ENSDLEG00000015824	SCARB2 (ENSDLEG00000015781)	NUP54 (ENSDLEG00000015760)	ENSDLEG00000015751	ART3 (ENSDLEG00000015742)	CXCL11 (ENSDLEG00000015735)	CXCL10 (ENSDLEG00000015725)	CXCL9 (ENSDLEG00000015713)	SDAD1 (ENSDLEG00000015669)	NAAA (ENSDLEG00000015643)	ENSDLEG00000015624	ENSDLEG00000015612	USO1 (ENSDLEG00000015557)	G3BP2 (ENSDLEG00000015533) ##22	CDKL2 (ENSDLEG00000015501)	C4orf26 (ENSDLEG00000015491)	THAP6 (ENSDLEG00000015479)	ENSDLEG00000015465	PARM1 (ENSDLEG00000015457)	BTC (ENSDLEG00000015447)	AREG (ENSDLEG00000015436)	EREG (ENSDLEG00000015423)	EPGN (ENSDLEG00000015415)	MTHFD2L (ENSDLEG00000015369)	ENSDLEG00000015334	ENSDLEG00000015316	PPBP (ENSDLEG00000015300)	CXCL6 (ENSDLEG00000015288)	CXCL8 (ENSDLEG00000015276)
Narwhal	MODERN SPECIES	307	SHROOM3 (ENSMMNG00015017330)	CCDC158 (ENSMMNG00015017382)	STBD1 (ENSMMNG00015017502)	ENSMMNG00015017540	ENSMMNG00015017663	NUP54 (ENSMMNG00015017690)	ART3 (ENSMMNG00015017783)	ENSMMNG00015017912	CXCL11 (ENSMMNG00015017926)	CXCL10 (ENSMMNG00015017946)	CXCL9 (ENSMMNG00015017972)	SDAD1 (ENSMMNG00015018019)	NAAA (ENSMMNG00015018101)	PPEF2 (ENSMMNG00015018187)	USO1 (ENSMMNG00015018305)	G3BP2 (ENSMMNG00015018356) ##22	CDKL2 (ENSMMNG00015018414)	ODAPH (ENSMMNG00015018460)	THAP6 (ENSMMNG00015018489)	RCHY1 (ENSMMNG00015018593)	PARM1 (ENSMMNG00015018704)	BTC (ENSMMNG00015018742)	AREG (ENSMMNG00015018786)	EREG (ENSMMNG00015018829)	EPGN (ENSMMNG00015018875)	MTHFD2L (ENSMMNG00015018933)	ENSMMNG00015019034	PPBP (ENSMMNG00015019057)	CXCL6 (ENSMMNG00015019077)	CXCL8 (ENSMMNG00015019109)	ENSMMNG00015019195
Vaquita	MODERN SPECIES	16	SHROOM3 (ENSPSNG00000001091)	CCDC158 (ENSPSNG00000000994)	STBD1 (ENSPSNG00000000938)	ENSPSNG00000000899	SCARB2 (ENSPSNG00000000820)	NUP54 (ENSPSNG00000000740)	ART3 (ENSPSNG00000000417)	ENSPSNG00000000362	CXCL11 (ENSPSNG00000000330)	CXCL10 (ENSPSNG00000000309)	CXCL9 (ENSPSNG00000000288)	SDAD1 (ENSPSNG00000000236)	NAAA (ENSPSNG00000000195)	PPEF2 (ENSPSNG00000000160)	USO1 (ENSPSNG00000000107)	G3BP2 (ENSPSNG00000008123) ##22	CDKL2 (ENSPSNG00000008076)	ODAPH (ENSPSNG00000008048)	THAP6 (ENSPSNG00000007967)	RCHY1 (ENSPSNG00000007872)	PARM1 (ENSPSNG00000007797)	BTC (ENSPSNG00000007755)	AREG (ENSPSNG00000007719)	EREG (ENSPSNG00000007676)	EPGN (ENSPSNG00000007434)	MTHFD2L (ENSPSNG00000007291)	ENSPSNG00000007236	ENSPSNG00000007191	ENSPSNG00000007124	PPBP (ENSPSNG00000007104)	CXCL6 (ENSPSNG00000007058)
Sperm whale	MODERN SPECIES	18	CCDC158 (ENSPCTG00005005424)	STBD1 (ENSPCTG00005005376)	ENSPCTG00005005327	SCARB2 (ENSPCTG00005005271)	NUP54 (ENSPCTG00005005233)	ART3 (ENSPCTG00005005207)	ENSPCTG00005005191	CXCL11 (ENSPCTG00005005172)	CXCL10 (ENSPCTG00005005139)	CXCL9 (ENSPCTG00005005108)	SDAD1 (ENSPCTG00005005013)	ENSPCTG00005004975	NAAA (ENSPCTG00005004917)	PPEF2 (ENSPCTG00005004811)	USO1 (ENSPCTG00005004458)	G3BP2 (ENSPCTG00005004344) ##22	CDKL2 (ENSPCTG00005004299)	ODAPH (ENSPCTG00005004269)	THAP6 (ENSPCTG00005004249)	RCHY1 (ENSPCTG00005004128)	PARM1 (ENSPCTG00005004089)	BTC (ENSPCTG00005004070)	AREG (ENSPCTG00005004048)	EREG (ENSPCTG00005004033)	EPGN (ENSPCTG00005003970)	MTHFD2L (ENSPCTG00005003921)	ENSPCTG00005003901	ENSPCTG00005003882	PPBP (ENSPCTG00005003873)	CXCL6 (ENSPCTG00005003864)	CXCL8 (ENSPCTG00005003859)
Blue whale	MODERN SPECIES	16	SHROOM3 (ENSBMSG00010005606)	CCDC158 (ENSBMSG00010005725)	STBD1 (ENSBMSG00010005782)	ENSBMSG00010005808	SCARB2 (ENSBMSG00010005840)	NUP54 (ENSBMSG00010005869)	ART3 (ENSBMSG00010005881)	ENSBMSG00010005890	CXCL11 (ENSBMSG00010005907)	CXCL10 (ENSBMSG00010005919)	CXCL9 (ENSBMSG00010005941)	SDAD1 (ENSBMSG00010006009)	NAAA (ENSBMSG00010006027)	PPEF2 (ENSBMSG00010006062)	USO1 (ENSBMSG00010006165)	G3BP2 (ENSBMSG00010006249) ##22	CDKL2 (ENSBMSG00010006310)	ODAPH (ENSBMSG00010006351)	THAP6 (ENSBMSG00010006379)	RCHY1 (ENSBMSG00010006458)	PARM1 (ENSBMSG00010006603)	BTC (ENSBMSG00010006626)	AREG (ENSBMSG00010006659)	EREG (ENSBMSG00010006689)	EPGN (ENSBMSG00010006741)	MTHFD2L (ENSBMSG00010006803)	ENSBMSG00010006820	ENSBMSG00010006836	CXCL1 (ENSBMSG00010006851)	ENSBMSG00010006871	PPBP (ENSBMSG00010006881)
Pecora	ANCESTRAL SPECIES	15	ENSGT00950000183003.a.a.a.a.a	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00940000155104.q.b	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00550000076374	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233.bb.b	ENSGT00940000163368	ENSGT00940000162559
Yarkand deer	MODERN SPECIES	29	SOWAHB (ENSCHYG00000003621)	ENSCHYG00000003504	ENSCHYG00000003398	STBD1 (ENSCHYG00000003378)	FAM47E (ENSCHYG00000003357)	SCARB2 (ENSCHYG00000003217)	NUP54 (ENSCHYG00000003162)	ART3 (ENSCHYG00000003055)	CXCL11 (ENSCHYG00000003024)	CXCL10 (ENSCHYG00000003012)	CXCL9 (ENSCHYG00000003003)	SDAD1 (ENSCHYG00000002887)	NAAA (ENSCHYG00000002828)	PPEF2 (ENSCHYG00000002796)	USO1 (ENSCHYG00000002656)	G3BP2 (ENSCHYG00000002607) ##22	CDKL2 (ENSCHYG00000002564)	ENSCHYG00000002546	ODAPH (ENSCHYG00000002541)	THAP6 (ENSCHYG00000002523)	RCHY1 (ENSCHYG00000002396)	PARM1 (ENSCHYG00000002352)	BTC (ENSCHYG00000002331)	AREG (ENSCHYG00000002308)	EREG (ENSCHYG00000002301)	EPGN (ENSCHYG00000002264)	MTHFD2L (ENSCHYG00000002226)	ENSCHYG00000002206	ENSCHYG00000002199	ENSCHYG00000002180	ENSCHYG00000002148
Percora_a	ANCESTRAL SPECIES	18	ENSGT00950000183003.a.a.a.a.a	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00940000155104.q.b	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00550000076374	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233.bb.b	ENSGT00940000163666	ENSGT00940000155233.bb.a
Bovidae	ANCESTRAL SPECIES	18	ENSGT00950000183003.a.a.a.a.a	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00940000155104.q.b	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00550000076374	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233.bb.b	ENSGT00940000163666	ENSGT00940000155233.bb.a
Bovinae	ANCESTRAL SPECIES	15	ENSGT00950000183003.a.a.a.a.a	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620.a	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00940000155104.q.b	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233.bb.b.a	ENSGT00940000155233.bb.a	ENSGT00940000163368	ENSGT00940000155233.bb.b.b
Bos	ANCESTRAL SPECIES	15	ENSGT00950000183003.a.a.a.a.a	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620.a	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00940000155104.q.b	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233.bb.b.a	ENSGT00940000155233.bb.a	ENSGT00940000163368	ENSGT00940000155233.bb.b.b
Bos_a	ANCESTRAL SPECIES	21	ENSGT00950000183003.a.a.a.a.a	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620.a	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00940000155104.q.b	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233.bb.a	ENSGT00940000163368	ENSGT00940000155233.bb.b.b	ENSGT00940000163666
Wild yak	MODERN SPECIES	2356										CXCL10 (ENSBMUG00000016790)	CXCL9 (ENSBMUG00000016804)	SDAD1 (ENSBMUG00000016860)	NAAA (ENSBMUG00000016913)	PPEF2 (ENSBMUG00000016959)	USO1 (ENSBMUG00000017017)	G3BP2 (ENSBMUG00000017057) ##22	CDKL2 (ENSBMUG00000017084)	ENSBMUG00000017095	ODAPH (ENSBMUG00000017110)	ENSBMUG00000017128
Domestic yak	MODERN SPECIES	25	SHROOM3 (ENSBGRG00000014140)	CCDC158 (ENSBGRG00000014187)	STBD1 (ENSBGRG00000014491)	FAM47E (ENSBGRG00000014524)	SCARB2 (ENSBGRG00000014740)	ENSBGRG00000014820	NUP54 (ENSBGRG00000014836)	ART3 (ENSBGRG00000014983)	CXCL11 (ENSBGRG00000015719)	CXCL10 (ENSBGRG00000015786)	CXCL9 (ENSBGRG00000015837)	SDAD1 (ENSBGRG00000015906)	NAAA (ENSBGRG00000016644)	PPEF2 (ENSBGRG00000016818)	USO1 (ENSBGRG00000017022)	G3BP2 (ENSBGRG00000017795) ##22	ENSBGRG00000018049	CDKL2 (ENSBGRG00000018088)	ENSBGRG00000018233	ODAPH (ENSBGRG00000018359)	THAP6 (ENSBGRG00000018407)	RCHY1 (ENSBGRG00000018556)	PARM1 (ENSBGRG00000019090)	BTC (ENSBGRG00000019197)	AREG (ENSBGRG00000019294)	EREG (ENSBGRG00000019471)	EPGN (ENSBGRG00000019518)	MTHFD2L (ENSBGRG00000019648)	ENSBGRG00000019815	ENSBGRG00000019854	ENSBGRG00000020163
Bos_b	ANCESTRAL SPECIES	14	ENSGT00950000183003.a.a.a.a.a	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620.a	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355.g	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00940000155104.q.b	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233.bb.b.b	ENSGT00940000163368	ENSGT00940000162749	ENSGT00390000012959.b.u
Hybrid Bos Indicus	MODERN SPECIES	25	SOWAHB (ENSBIXG00005023342)	SHROOM3 (ENSBIXG00005023403)	ENSBIXG00005004011	CCDC158 (ENSBIXG00005023597)	ENSBIXG00005023711	SCARB2 (ENSBIXG00005023859)	CXCL11 (ENSBIXG00005023964)	CXCL10 (ENSBIXG00005006677)	ART3 (ENSBIXG00005024126)	CXCL9 (ENSBIXG00005024192)	ENSBIXG00005024245	NAAA (ENSBIXG00005004158)	PPEF2 (ENSBIXG00005024385)	USO1 (ENSBIXG00005024502)	ENSBIXG00005004190	G3BP2 (ENSBIXG00005024751) ##22	CDKL2 (ENSBIXG00005004240)	ENSBIXG00005024906	ODAPH (ENSBIXG00005024923)	THAP6 (ENSBIXG00005024993)	RCHY1 (ENSBIXG00005025176)	PARM1 (ENSBIXG00005025268)	BTC (ENSBIXG00005004302)	AREG (ENSBIXG00005025328)	EREG (ENSBIXG00005025352)	EPGN (ENSBIXG00005025481)	MTHFD2L (ENSBIXG00005025607)	ENSBIXG00005025636	ENSBIXG00005025724	ENSBIXG00005005893	CXCL6 (ENSBIXG00005025825)
Cow	MODERN SPECIES	25	ENSBTAG00000050665	CCDC158 (ENSBTAG00000012157)	STBD1 (ENSBTAG00000010389)	ENSBTAG00000004921	ENSBTAG00000053885	SCARB2 (ENSBTAG00000010956)	NUP54 (ENSBTAG00000010955)	CXCL11 (ENSBTAG00000005603)	CXCL10 (ENSBTAG00000001725)	ART3 (ENSBTAG00000010954)	CXCL9 (ENSBTAG00000050852)	SDAD1 (ENSBTAG00000007639)	NAAA (ENSBTAG00000019478)	PPEF2 (ENSBTAG00000015449)	USO1 (ENSBTAG00000017028)	G3BP2 (ENSBTAG00000014041) ##22	CDKL2 (ENSBTAG00000014038)	ENSBTAG00000046788	ODAPH (ENSBTAG00000050403)	THAP6 (ENSBTAG00000007190)	RCHY1 (ENSBTAG00000007189)	PARM1 (ENSBTAG00000015919)	BTC (ENSBTAG00000004237)	AREG (ENSBTAG00000018134)	EREG (ENSBTAG00000010273)	EPGN (ENSBTAG00000004052)	MTHFD2L (ENSBTAG00000043960)	GRO1 (ENSBTAG00000037558)	CXCL3 (ENSBTAG00000037778)	ENSBTAG00000051891	CXCL2 (ENSBTAG00000027513)
American bison	MODERN SPECIES	3021	SHROOM3 (ENSBBBG00000018348)	CCDC158 (ENSBBBG00000004459)	STBD1 (ENSBBBG00000018090)	ENSBBBG00000018082	SCARB2 (ENSBBBG00000018067)	ENSBBBG00000004403	ENSBBBG00000017862	ENSBBBG00000017857	CXCL11 (ENSBBBG00000008603)	CXCL10 (ENSBBBG00000007950)	CXCL9 (ENSBBBG00000017829)	SDAD1 (ENSBBBG00000017820)	NAAA (ENSBBBG00000004382)	PPEF2 (ENSBBBG00000017723)	USO1 (ENSBBBG00000017656)	G3BP2 (ENSBBBG00000004352) ##22	CDKL2 (ENSBBBG00000007268)	ENSBBBG00000017475	ODAPH (ENSBBBG00000004321)	THAP6 (ENSBBBG00000004316)	ENSBBBG00000008602	PARM1 (ENSBBBG00000007577)	BTC (ENSBBBG00000017380)	AREG (ENSBBBG00000017367)	EREG (ENSBBBG00000008931)	EPGN (ENSBBBG00000017336)	MTHFD2L (ENSBBBG00000017281)	ENSBBBG00000017266	ENSBBBG00000004273	ENSBBBG00000017247	ENSBBBG00000017239
Caprinae	ANCESTRAL SPECIES	13	ENSGT00950000183003.a.a.a.a.a	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00550000076374	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233.bb.b	ENSGT00940000155233.bb.a	ENSGT00940000163368	ENSGT00940000162559
Rambouillet Sheep	MODERN SPECIES	22	SEPTIN11 (ENSOARG00020006144)	ENSOARG00020006114	CCDC158 (ENSOARG00020004930)	STBD1 (ENSOARG00020004904)	ENSOARG00020004803	SCARB2 (ENSOARG00020004707)	NUP54 (ENSOARG00020004646)	CXCL11 (ENSOARG00020004611)	CXCL10 (ENSOARG00020004582)	ART3 (ENSOARG00020004516)	CXCL9 (ENSOARG00020004489)	SDAD1 (ENSOARG00020004401)	NAAA (ENSOARG00020004352)	PPEF2 (ENSOARG00020004139)	USO1 (ENSOARG00020003958)	G3BP2 (ENSOARG00020003866) ##22	CDKL2 (ENSOARG00020003706)	ODAPH (ENSOARG00020003677)	THAP6 (ENSOARG00020003613)	RCHY1 (ENSOARG00020003434)	PARM1 (ENSOARG00020003365)	BTC (ENSOARG00020003308)	AREG (ENSOARG00020003258)	EREG (ENSOARG00020003172)	EPGN (ENSOARG00020003017)	ENSOARG00020002968	ENSOARG00020002961	CXCL1 (ENSOARG00020002942)	ENSOARG00020002928	PPBP (ENSOARG00020002923)	ENSOARG00020002910
Goat	MODERN SPECIES	25	CCDC158 (ENSCHIG00000025634)	STBD1 (ENSCHIG00000012021)	ENSCHIG00000018331	FAM47E (ENSCHIG00000025302)	ENSCHIG00000013809	NUP54 (ENSCHIG00000027258)	CXCL11 (ENSCHIG00000017407)	CXCL10 (ENSCHIG00000015403)	CXCL9 (ENSCHIG00000021546)	ART3 (ENSCHIG00000021462)	SDAD1 (ENSCHIG00000006867)	NAAA (ENSCHIG00000016109)	PPEF2 (ENSCHIG00000024221)	USO1 (ENSCHIG00000013930)	ENSCHIG00000011754	G3BP2 (ENSCHIG00000013864) ##22	CDKL2 (ENSCHIG00000022259)	ODAPH (ENSCHIG00000010499)	THAP6 (ENSCHIG00000020576)	RCHY1 (ENSCHIG00000009901)	ENSCHIG00000022543	PARM1 (ENSCHIG00000010257)	BTC (ENSCHIG00000024625)	AREG (ENSCHIG00000015847)	EREG (ENSCHIG00000000483)	EPGN (ENSCHIG00000020921)	MTHFD2L (ENSCHIG00000012042)	ENSCHIG00000024071	ENSCHIG00000014217	ENSCHIG00000019433	ENSCHIG00000026175
Siberian musk deer	MODERN SPECIES	1274	STBD1 (ENSMMSG00000022116)	FAM47E (ENSMMSG00000022132)	SCARB2 (ENSMMSG00000022167)	NUP54 (ENSMMSG00000022298)	ART3 (ENSMMSG00000022325)	CXCL11 (ENSMMSG00000022349)	CXCL10 (ENSMMSG00000022364)	CXCL9 (ENSMMSG00000022371)	SDAD1 (ENSMMSG00000022401)	NAAA (ENSMMSG00000022466)	PPEF2 (ENSMMSG00000022483)	ENSMMSG00000022497	ENSMMSG00000022502	USO1 (ENSMMSG00000022526)	ENSMMSG00000022615	G3BP2 (ENSMMSG00000022629) ##22	CDKL2 (ENSMMSG00000022671)	ODAPH (ENSMMSG00000022711)	THAP6 (ENSMMSG00000022720)	RCHY1 (ENSMMSG00000018454)	PARM1 (ENSMMSG00000018609)	BTC (ENSMMSG00000018648)	ENSMMSG00000018669	AREG (ENSMMSG00000018707)	EREG (ENSMMSG00000018743)	EPGN (ENSMMSG00000018764)	MTHFD2L (ENSMMSG00000018839)	ENSMMSG00000018907	ENSMMSG00000018931	ENSMMSG00000018953	ENSMMSG00000018974
Laurasiatheria_b	ANCESTRAL SPECIES	8	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000012635.a.b	ENSGT00390000010355	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00900000143472	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000163368	ENSGT00940000162559	ENSGT00940000162749
Carnivora	ANCESTRAL SPECIES	5	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00900000143472	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000163368	ENSGT00940000162559	ENSGT00940000162749
Caniformia	ANCESTRAL SPECIES	7	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00900000143472	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000163368	ENSGT00940000162559	ENSGT00940000162749
Canidae	ANCESTRAL SPECIES	40	ENSGT00950000183003.a.a.a.a.a	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355.k.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00950000182901.a.a.b.b.a.b.a.a.a.b	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853
Canis_lupus	ANCESTRAL SPECIES	30	ENSGT00940000160196	ENSGT00950000183003.a.a.a.a.a	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00390000010355.k.a	ENSGT00390000012635.a.a	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00950000182901.a.a.b.b.a.b.a.a.a.b	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000010063.d.a.a	ENSGT00960000187191	ENSGT00940000157860	ENSGT00940000164579	ENSGT00910000147166	ENSGT00390000003125.h	ENSGT00940000159353	ENSGT00390000001844.a.a	ENSGT00390000002429	ENSGT00950000182952.A.b
Dingo	MODERN SPECIES	342	SEPTIN11 (ENSCAFG00020011148)	SOWAHB (ENSCAFG00020011471)	SHROOM3 (ENSCAFG00020011481)	ENSCAFG00020011546	CCDC158 (ENSCAFG00020011548)	STBD1 (ENSCAFG00020011558)	SCARB2 (ENSCAFG00020011560)	NUP54 (ENSCAFG00020011564)	ART3 (ENSCAFG00020011569)	ENSCAFG00020011570	CXCL10 (ENSCAFG00020011575)	SDAD1 (ENSCAFG00020011582)	ENSCAFG00020011610	PPEF2 (ENSCAFG00020011617)	USO1 (ENSCAFG00020011626)	G3BP2 (ENSCAFG00020011645) ##22	CDKL2 (ENSCAFG00020011668)	ENSCAFG00020011679	ENSCAFG00020011681	ENSCAFG00020011683	THAP6 (ENSCAFG00020011684)	ENSCAFG00020011687
Dog	MODERN SPECIES	25	SOWAHB (ENSCAFG00845014859)	SHROOM3 (ENSCAFG00845014821)	ENSCAFG00845014745	CCDC158 (ENSCAFG00845030219)	STBD1 (ENSCAFG00845030147)	ENSCAFG00845030118	SCARB2 (ENSCAFG00845029992)	NUP54 (ENSCAFG00845029928)	CXCL11 (ENSCAFG00845029883)	CXCL10 (ENSCAFG00845029862)	ART3 (ENSCAFG00845029743)	ENSCAFG00845029614	ENSCAFG00845029566	PPEF2 (ENSCAFG00845029176)	USO1 (ENSCAFG00845028789)	G3BP2 (ENSCAFG00845028548) ##22	CDKL2 (ENSCAFG00845028424)	ENSCAFG00845028372	ENSCAFG00845028346	ENSCAFG00845028277	RCHY1 (ENSCAFG00845028101)
Red fox	MODERN SPECIES	11	SHROOM3 (ENSVVUG00000023389)	CCDC158 (ENSVVUG00000023403)	STBD1 (ENSVVUG00000023432)	ENSVVUG00000023434	SCARB2 (ENSVVUG00000023440)	NUP54 (ENSVVUG00000023444)	ENSVVUG00000023448	ART3 (ENSVVUG00000023461)	CXCL10 (ENSVVUG00000023469)	ENSVVUG00000023471	CXCL9 (ENSVVUG00000023474)	ENSVVUG00000023531	NAAA (ENSVVUG00000024151)	PPEF2 (ENSVVUG00000024157)	USO1 (ENSVVUG00000024163)	G3BP2 (ENSVVUG00000024171) ##22	CDKL2 (ENSVVUG00000024175)	ENSVVUG00000024181	ENSVVUG00000024183	ENSVVUG00000024186	THAP6 (ENSVVUG00000024190)	RCHY1 (ENSVVUG00000024193)
Caniformia_b	ANCESTRAL SPECIES	5	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00900000143472	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000163368	ENSGT00940000162559	ENSGT00940000162749
Mustelinae	ANCESTRAL SPECIES	73	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00900000143472	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000163368	ENSGT00940000162559	ENSGT00940000163567
Ferret	MODERN SPECIES	282	ENSMPUG00000008425	CCDC158 (ENSMPUG00000008436)	STBD1 (ENSMPUG00000008450)	ENSMPUG00000008458	SCARB2 (ENSMPUG00000008468)	NUP54 (ENSMPUG00000008664)	ART3 (ENSMPUG00000008675)	CXCL11 (ENSMPUG00000008682)	CXCL10 (ENSMPUG00000008689)	CXCL9 (ENSMPUG00000008695)	SDAD1 (ENSMPUG00000008703)	NAAA (ENSMPUG00000008717)	PPEF2 (ENSMPUG00000008765)	USO1 (ENSMPUG00000008853)	ENSMPUG00000009035	G3BP2 (ENSMPUG00000009042) ##22	CDKL2 (ENSMPUG00000009056)	THAP6 (ENSMPUG00000009068)	ENSMPUG00000009077	PARM1 (ENSMPUG00000009091)	BTC (ENSMPUG00000009097)	AREG (ENSMPUG00000009103)	EREG (ENSMPUG00000009116)	EPGN (ENSMPUG00000009134)	MTHFD2L (ENSMPUG00000009141)	ENSMPUG00000009150	ENSMPUG00000009169	ENSMPUG00000009178	ENSMPUG00000009198	PPBP (ENSMPUG00000009210)	CXCL8 (ENSMPUG00000009219)
American mink	MODERN SPECIES	88								CXL11 (ENSNVIG00000014150)	CXL10 (ENSNVIG00000014180)	CXCL9 (ENSNVIG00000014197)	SDAD1 (ENSNVIG00000014207)	ENSNVIG00000014274	NAAA (ENSNVIG00000014287)	ENSNVIG00000014316	USO1 (ENSNVIG00000014324)	G3BP2 (ENSNVIG00000014462) ##22	ENSNVIG00000014535	CDKL2 (ENSNVIG00000014549)	ODAPH (ENSNVIG00000014631)	B4E146 (ENSNVIG00000014645)	RCHY1 (ENSNVIG00000014709)	PARM1 (ENSNVIG00000014781)	BTC (ENSNVIG00000014792)	ENSNVIG00000014808	AREG (ENSNVIG00000014815)	EREG (ENSNVIG00000014847)	EPGN (ENSNVIG00000014873)	MTHFD2L (ENSNVIG00000014961)	PPBP (ENSNVIG00000014979)	CXCL5 (ENSNVIG00000015005)	IL8 (ENSNVIG00000015030)
Ursidae	ANCESTRAL SPECIES	17	ENSGT00940000157778.eb	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355.j	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00900000143472	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000163368	ENSGT00940000162559	ENSGT00940000162749
Ursus	ANCESTRAL SPECIES	83	ENSGT00950000183003.a.a.a.a.a	ENSGT00940000157778.eb	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355.j	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00900000143472	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT01030000234866	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233.pb	ENSGT00940000155233.qb	ENSGT00940000163368
Polar bear	MODERN SPECIES	183	SEPTIN11 (ENSUMAG00000007904)	SHROOM3 (ENSUMAG00000007894)	CCDC158 (ENSUMAG00000007861)	STBD1 (ENSUMAG00000007849)	FAM47E (ENSUMAG00000007843)	SCARB2 (ENSUMAG00000007709)	NUP54 (ENSUMAG00000007669)	ENSUMAG00000007659	CXCL11 (ENSUMAG00000007654)	CXCL10 (ENSUMAG00000007653)	ENSUMAG00000007647	SDAD1 (ENSUMAG00000006926)	ENSUMAG00000006833	NAAA (ENSUMAG00000006828)	USO1 (ENSUMAG00000006786)	G3BP2 (ENSUMAG00000006774) ##22	ENSUMAG00000006758	CDKL2 (ENSUMAG00000006742)	ODAPH (ENSUMAG00000006737)	THAP6 (ENSUMAG00000006734)	RCHY1 (ENSUMAG00000006727)	PARM1 (ENSUMAG00000006722)	BTC (ENSUMAG00000006717)	ENSUMAG00000006715	AREG (ENSUMAG00000006713)	EREG (ENSUMAG00000006708)	EPGN (ENSUMAG00000006706)	MTHFD2L (ENSUMAG00000006704)	ENSUMAG00000006702	ENSUMAG00000006696	ENSUMAG00000006682
American black bear	MODERN SPECIES	485															USO1 (ENSUAMG00000017624)	G3BP2 (ENSUAMG00000017625) ##22	CDKL2 (ENSUAMG00000017626)	ODAPH (ENSUAMG00000017627)	ENSUAMG00000017628	RCHY1 (ENSUAMG00000017629)
Giant Panda	MODERN SPECIES	2	SHROOM3 (ENSAMEG00000011822)	CCDC158 (ENSAMEG00000011815)	STBD1 (ENSAMEG00000011812)	FAM47E (ENSAMEG00000011810)	SCARB2 (ENSAMEG00000011797)	NUP54 (ENSAMEG00000011771)	ENSAMEG00000011759	CXCL11 (ENSAMEG00000029394)	CXCL10 (ENSAMEG00000023703)	CXCL9 (ENSAMEG00000031403)	SDAD1 (ENSAMEG00000011674)	ENSAMEG00000030089	NAAA (ENSAMEG00000014605)	PPEF2 (ENSAMEG00000014536)	USO1 (ENSAMEG00000014482)	G3BP2 (ENSAMEG00000014424) ##22	ENSAMEG00000029809	CDKL2 (ENSAMEG00000014400)	ODAPH (ENSAMEG00000014399)	THAP6 (ENSAMEG00000014396)	RCHY1 (ENSAMEG00000014376)	PARM1 (ENSAMEG00000014369)	BTC (ENSAMEG00000014367)	AREG (ENSAMEG00000014350)	EREG (ENSAMEG00000014348)	EPGN (ENSAMEG00000014345)	MTHFD2L (ENSAMEG00000014343)	CXCL2 (ENSAMEG00000025277)	ENSAMEG00000014333	ENSAMEG00000026355	ENSAMEG00000014328
Felidae	ANCESTRAL SPECIES	4	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000163368	ENSGT00940000162559	ENSGT00940000162749	ENSGT00940000160757
Panthera	ANCESTRAL SPECIES	5	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000158854.g.b	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000163368	ENSGT00940000162559	ENSGT00940000162749
Tiger	MODERN SPECIES	251												ENSPTIG00000021364	NAAA (ENSPTIG00000020236)	PPEF2 (ENSPTIG00000016331)	USO1 (ENSPTIG00000006028)	G3BP2 (ENSPTIG00000019304) ##22	CDKL2 (ENSPTIG00000017974)	ODAPH (ENSPTIG00000017102)	THAP6 (ENSPTIG00000013988)	RCHY1 (ENSPTIG00000009562)	PARM1 (ENSPTIG00000007534)	BTC (ENSPTIG00000006654)	AREG (ENSPTIG00000005541)	EREG (ENSPTIG00000001328)	ENSPTIG00000021998	ENSPTIG00000021783	MTHFD2L (ENSPTIG00000021125)	ENSPTIG00000020712	ENSPTIG00000020623	ENSPTIG00000019161	CXCL8 (ENSPTIG00000019023)
Panthera_a	ANCESTRAL SPECIES	2	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000158854.g.b	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000163368	ENSGT00940000162559	ENSGT00940000162749
leopard	MODERN SPECIES	2	SOWAHB (ENSPPRG00000017174)	CCDC158 (ENSPPRG00000003721)	STBD1 (ENSPPRG00000001497)	FAM47E (ENSPPRG00000001347)	SCARB2 (ENSPPRG00000000276)	NUP54 (ENSPPRG00000024312)	ART3 (ENSPPRG00000020758)	CXCL11 (ENSPPRG00000015828)	CXCL10 (ENSPPRG00000014199)	CXCL9 (ENSPPRG00000013992)	SDAD1 (ENSPPRG00000013741)	ENSPPRG00000012197	NAAA (ENSPPRG00000011936)	PPEF2 (ENSPPRG00000011614)	USO1 (ENSPPRG00000010544)	G3BP2 (ENSPPRG00000009339) ##22	CDKL2 (ENSPPRG00000008764)	ODAPH (ENSPPRG00000007796)	THAP6 (ENSPPRG00000006680)	RCHY1 (ENSPPRG00000004994)	ENSPPRG00000003760	BTC (ENSPPRG00000003572)	AREG (ENSPPRG00000003555)	EREG (ENSPPRG00000003435)	EPGN (ENSPPRG00000003203)	MTHFD2L (ENSPPRG00000001589)	ENSPPRG00000016381	ENSPPRG00000000772	ENSPPRG00000000385	CXCL6 (ENSPPRG00000022704)	CXCL8 (ENSPPRG00000023651)
lion	MODERN SPECIES	4	SOWAHB (ENSPLOG00000000958)	SHROOM3 (ENSPLOG00000000970)	CCDC158 (ENSPLOG00000001049)	STBD1 (ENSPLOG00000001247)	ENSPLOG00000001345	SCARB2 (ENSPLOG00000001393)	NUP54 (ENSPLOG00000001457)	ART3 (ENSPLOG00000001504)	CXCL11 (ENSPLOG00000001570)	CXCL10 (ENSPLOG00000001579)	CXCL9 (ENSPLOG00000001665)	SDAD1 (ENSPLOG00000001711)	NAAA (ENSPLOG00000001893)	PPEF2 (ENSPLOG00000001914)	USO1 (ENSPLOG00000001993)	G3BP2 (ENSPLOG00000002311) ##22	CDKL2 (ENSPLOG00000002375)	ODAPH (ENSPLOG00000002427)	THAP6 (ENSPLOG00000002474)	RCHY1 (ENSPLOG00000002533)	PARM1 (ENSPLOG00000002640)	BTC (ENSPLOG00000002669)	AREG (ENSPLOG00000002689)	EREG (ENSPLOG00000002722)	EPGN (ENSPLOG00000002761)	MTHFD2L (ENSPLOG00000002835)	ENSPLOG00000002872	ENSPLOG00000002890	ENSPLOG00000002907	ENSPLOG00000002928	ENSPLOG00000002943
Cat	MODERN SPECIES	235	SOWAHB (ENSFCAG00000023286)	SHROOM3 (ENSFCAG00000012875)	STBD1 (ENSFCAG00000028423)	FAM47E (ENSFCAG00000041994)	SCARB2 (ENSFCAG00000001121)	NUP54 (ENSFCAG00000001118)	ART3 (ENSFCAG00000027376)	CXCL11 (ENSFCAG00000039100)	CXCL10 (ENSFCAG00000042149)	CXCL9 (ENSFCAG00000041612)	SDAD1 (ENSFCAG00000008363)	ENSFCAG00000039639	NAAA (ENSFCAG00000031199)	PPEF2 (ENSFCAG00000006463)	USO1 (ENSFCAG00000022433)	G3BP2 (ENSFCAG00000025114) ##22	CDKL2 (ENSFCAG00000025744)	ODAPH (ENSFCAG00000042407)	THAP6 (ENSFCAG00000033770)	RCHY1 (ENSFCAG00000024526)	ENSFCAG00000042985	BTC (ENSFCAG00000033702)	AREG (ENSFCAG00000000370)	EREG (ENSFCAG00000027465)	EPGN (ENSFCAG00000044412)	MTHFD2L (ENSFCAG00000043710)	ENSFCAG00000040720	ENSFCAG00000052125	ENSFCAG00000045931	PPBP (ENSFCAG00000053367)	CXCL6 (ENSFCAG00000014969)
Laurasiatheria_c	ANCESTRAL SPECIES	8	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00390000012635.a.b	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000163368	ENSGT00940000162559	ENSGT00940000162749	ENSGT00940000160757
Equus	ANCESTRAL SPECIES	12	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00390000012635.a.b	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233.eb	ENSGT00940000155233.db	ENSGT00940000163368	ENSGT00940000162559	ENSGT00940000162749
Donkey	MODERN SPECIES	22	CCDC158 (ENSEASG00005016456)	STBD1 (ENSEASG00005031934)	FAM47E (ENSEASG00005016462)	SCARB2 (ENSEASG00005016464)	NUP54 (ENSEASG00005016472)	CXCL11 (ENSEASG00005024870)	CXCL10 (ENSEASG00005024207)	ART3 (ENSEASG00005016477)	CXCL9 (ENSEASG00005034631)	ENSEASG00005016493	SDAD1 (ENSEASG00005016487)	NAAA (ENSEASG00005016496)	PPEF2 (ENSEASG00005016501)	USO1 (ENSEASG00005016504)	ENSEASG00005016512	G3BP2 (ENSEASG00005016513) ##22	CDKL2 (ENSEASG00005016515)	ENSEASG00005026483	THAP6 (ENSEASG00005016525)	RCHY1 (ENSEASG00005016529)	ENSEASG00005016532	PARM1 (ENSEASG00005016533)	BTC (ENSEASG00005016539)	AREG (ENSEASG00005016540)	ENSEASG00005016542	EREG (ENSEASG00005026456)	ENSEASG00005034167	MTHFD2L (ENSEASG00005016552)	ENSEASG00005016555	ENSEASG00005032002	ENSEASG00005024064
Horse	MODERN SPECIES	22	SEPTIN11 (ENSECAG00000005768)	SHROOM3 (ENSECAG00000019008)	CCDC158 (ENSECAG00000019478)	STBD1 (ENSECAG00000029043)	FAM47E (ENSECAG00000024233)	SCARB2 (ENSECAG00000024722)	NUP54 (ENSECAG00000025004)	ART3 (ENSECAG00000007900)	CXCL11 (ENSECAG00000012253)	CXCL9 (ENSECAG00000046132)	SDAD1 (ENSECAG00000016212)	ENSECAG00000032258	NAAA (ENSECAG00000005265)	PPEF2 (ENSECAG00000009342)	USO1 (ENSECAG00000013245)	G3BP2 (ENSECAG00000007917) ##22	ENSECAG00000037068	CDKL2 (ENSECAG00000013088)	ODAPH (ENSECAG00000015736)	THAP6 (ENSECAG00000015765)	RCHY1 (ENSECAG00000016109)	ENSECAG00000049871	PARM1 (ENSECAG00000021602)	BTC (ENSECAG00000050004)	AREG (ENSECAG00000022525)	EREG (ENSECAG00000007588)	EPGN (ENSECAG00000008112)	MTHFD2L (ENSECAG00000026949)	MIP-2BETA (ENSECAG00000010560)	ENSECAG00000044817	ENSECAG00000012560
Chiroptera	ANCESTRAL SPECIES	9	ENSGT00950000183003.a.a.a.a.a	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000163368	ENSGT00940000162559	ENSGT00940000162749	ENSGT00940000160757
Megabat	MODERN SPECIES	1845													NAAA (ENSPVAG00000010173)	PPEF2 (ENSPVAG00000010170)	USO1 (ENSPVAG00000010167)	G3BP2 (ENSPVAG00000010166) ##22	CDKL2 (ENSPVAG00000010165)	ODAPH (ENSPVAG00000010163)	THAP6 (ENSPVAG00000010162)	RCHY1 (ENSPVAG00000010161)
Microchiroptera	ANCESTRAL SPECIES	10	ENSGT00950000183003.a.a.a.a.a	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000163368	ENSGT00940000162559	ENSGT00940000162749	ENSGT00940000160757
Microbat	MODERN SPECIES	1421						NUP54 (ENSMLUG00000005318)	ART3 (ENSMLUG00000023059)	CXCL11 (ENSMLUG00000005316)	CXCL10 (ENSMLUG00000005312)	CXCL9 (ENSMLUG00000006947)	SDAD1 (ENSMLUG00000006925)	NAAA (ENSMLUG00000006891)	PPEF2 (ENSMLUG00000016301)	USO1 (ENSMLUG00000016277)	ENSMLUG00000029981	G3BP2 (ENSMLUG00000004753) ##22	CDKL2 (ENSMLUG00000004742)	THAP6 (ENSMLUG00000012704)	RCHY1 (ENSMLUG00000027008)
Greater horseshoe bat	MODERN SPECIES	23	SOWAHB (ENSRFEG00010000397)	SHROOM3 (ENSRFEG00010000274)	CCDC158 (ENSRFEG00010021128)	STBD1 (ENSRFEG00010021110)	FAM47E (ENSRFEG00010021095)	SCARB2 (ENSRFEG00010021015)	NUP54 (ENSRFEG00010020975)	CXCL11 (ENSRFEG00010020953)	CXCL10 (ENSRFEG00010020933)	ART3 (ENSRFEG00010020915)	CXCL9 (ENSRFEG00010020899)	SDAD1 (ENSRFEG00010020853)	NAAA (ENSRFEG00010020806)	ENSRFEG00010020790	USO1 (ENSRFEG00010020717)	G3BP2 (ENSRFEG00010020652) ##22	CDKL2 (ENSRFEG00010020613)	ODAPH (ENSRFEG00010020595)	THAP6 (ENSRFEG00010020571)	RCHY1 (ENSRFEG00010020458)	PARM1 (ENSRFEG00010020401)	ENSRFEG00010020378	AREG (ENSRFEG00010020349)	EREG (ENSRFEG00010020328)	EPGN (ENSRFEG00010020156)	MTHFD2L (ENSRFEG00010020084)	ENSRFEG00010020049	ENSRFEG00010020010	ENSRFEG00010019982	PPBP (ENSRFEG00010019932)	CXCL6 (ENSRFEG00010019897)
Euarchontoglires	ANCESTRAL SPECIES	9	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00900000143472	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00550000076374	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000163368	ENSGT00940000163567
Primates	ANCESTRAL SPECIES	10	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00550000076374	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000163368	ENSGT00940000163567	ENSGT00940000163986
Haplorrhini	ANCESTRAL SPECIES	20	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00550000076374	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901
Simiiformes	ANCESTRAL SPECIES	10	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355.q.a	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00550000076374	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000163986	ENSGT00940000163368	ENSGT00940000155233	ENSGT00940000163567
Catarrhini	ANCESTRAL SPECIES	14	ENSGT00390000013339	ENSGT00940000154632.q.b.b	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355.q.a	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00550000076374	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000163986.a	ENSGT00940000163986.b	ENSGT00940000163567	ENSGT00940000162559
Cercopithecidae	ANCESTRAL SPECIES	10	ENSGT00390000013339	ENSGT00940000154632.q.b.b	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355.q.a.c	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00560000078715	ENSGT00940000162692	ENSGT00390000008853	ENSGT00550000076374	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000163986.a	ENSGT00940000155233.g.a	ENSGT00940000163567.b
Cercopithecinae	ANCESTRAL SPECIES	14	ENSGT00390000013339	ENSGT00940000154632.q.b.b	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355.q.a.c	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00550000076374	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000163986.a	ENSGT00940000155233.g.a	ENSGT00940000163567.b	ENSGT00940000162559
Cercopithecinae_a	ANCESTRAL SPECIES	13	ENSGT00390000013339	ENSGT00940000154632.q.b.b	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355.q.a.c	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00560000078715	ENSGT00940000162692	ENSGT00390000008853	ENSGT00550000076374	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000163986.a	ENSGT00940000163567.a	ENSGT00940000155233.g.a.a.a	ENSGT00940000163567.b
Macaca	ANCESTRAL SPECIES	26	ENSGT00390000013339	ENSGT00940000154632.q.b.b	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355.q.a.c	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00560000078715	ENSGT00940000162692	ENSGT00390000008853	ENSGT00550000076374	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000163986.a	ENSGT00940000163567.b	ENSGT00940000162559	ENSGT00940000163666.a.a.a
Pig-tailed macaque	MODERN SPECIES	544	CCDC158 (ENSMNEG00000034010)	ENSMNEG00000041762	STBD1 (ENSMNEG00000043007)	FAM47E (ENSMNEG00000030910)	SCARB2 (ENSMNEG00000033584)	NUP54 (ENSMNEG00000044661)	ART3 (ENSMNEG00000030524)	CXCL11 (ENSMNEG00000043719)	CXCL10 (ENSMNEG00000045574)	CXCL9 (ENSMNEG00000002368)	SDAD1 (ENSMNEG00000037492)	ENSMNEG00000025669	NAAA (ENSMNEG00000040175)	PPEF2 (ENSMNEG00000041901)	USO1 (ENSMNEG00000044706)	G3BP2 (ENSMNEG00000045171) ##22	CDKL2 (ENSMNEG00000044198)	ENSMNEG00000026732	THAP6 (ENSMNEG00000042471)	RCHY1 (ENSMNEG00000040617)	ENSMNEG00000041451	PARM1 (ENSMNEG00000030041)	BTC (ENSMNEG00000034254)	AREG (ENSMNEG00000036633)	EREG (ENSMNEG00000039842)	EPGN (ENSMNEG00000030868)	MTHFD2L (ENSMNEG00000035739)	CXCL2 (ENSMNEG00000034692)	ENSMNEG00000033294	ENSMNEG00000028930	PPBP (ENSMNEG00000042825)
Macaca_a	ANCESTRAL SPECIES	12	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355.q.a.c	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000163986.a	ENSGT00940000155233.g.a.a.a	ENSGT00940000163567.b	ENSGT00940000162559	ENSGT00940000163666.a.a.a	ENSGT00940000155233.h
Rhesus	MODERN SPECIES	15	CCNI (ENSMMUG00000019904)	SOWAHB (ENSMMUG00000018186)	SHROOM3 (ENSMMUG00000020919)	CCDC158 (ENSMMUG00000020916)	FAM47E (ENSMMUG00000020914)	SCARB2 (ENSMMUG00000020913)	NUP54 (ENSMMUG00000020910)	ART3 (ENSMMUG00000020907)	CXCL11 (ENSMMUG00000053130)	CXCL10 (ENSMMUG00000020903)	CXCL9 (ENSMMUG00000043801)	SDAD1 (ENSMMUG00000017503)	NAAA (ENSMMUG00000017501)	PPEF2 (ENSMMUG00000015716)	USO1 (ENSMMUG00000021835)	G3BP2 (ENSMMUG00000002153) ##22	CDKL2 (ENSMMUG00000023227)	THAP6 (ENSMMUG00000009180)	RCHY1 (ENSMMUG00000009177)	PARM1 (ENSMMUG00000064978)	BTC (ENSMMUG00000055714)	AREG (ENSMMUG00000002314)	EREG (ENSMMUG00000058506)	EPGN (ENSMMUG00000002312)	MTHFD2L (ENSMMUG00000015554)	CXCL3 (ENSMMUG00000051444)	CXCL5 (ENSMMUG00000045102)	PPBP (ENSMMUG00000042371)	PF4 (ENSMMUG00000058452)	ENSMMUG00000064819	CXCL1 (ENSMMUG00000008367)
Crab-eating macaque	MODERN SPECIES	15	SHROOM3 (ENSMFAG00000002770)	CCDC158 (ENSMFAG00000040081)	STBD1 (ENSMFAG00000053353)	FAM47E (ENSMFAG00000041213)	SCARB2 (ENSMFAG00000039184)	NUP54 (ENSMFAG00000031205)	ART3 (ENSMFAG00000040258)	CXCL11 (ENSMFAG00000045313)	CXCL10 (ENSMFAG00000064155)	CXCL9 (ENSMFAG00000039917)	SDAD1 (ENSMFAG00000038793)	ENSMFAG00000044646	NAAA (ENSMFAG00000041803)	PPEF2 (ENSMFAG00000045101)	USO1 (ENSMFAG00000037889)	G3BP2 (ENSMFAG00000044717) ##22	CDKL2 (ENSMFAG00000043830)	THAP6 (ENSMFAG00000045214)	RCHY1 (ENSMFAG00000036832)	ENSMFAG00000041116	PARM1 (ENSMFAG00000042667)	BTC (ENSMFAG00000041065)	AREG (ENSMFAG00000039089)	EREG (ENSMFAG00000052508)	EPGN (ENSMFAG00000033022)	MTHFD2L (ENSMFAG00000036503)	ENSMFAG00000044905	CXCL5 (ENSMFAG00000002889)	PPBP (ENSMFAG00000031461)	PF4 (ENSMFAG00000055984)	ENSMFAG00000065742
Cercopithecinae_b	ANCESTRAL SPECIES	6	ENSGT00390000013339	ENSGT00940000154632.q.b.b	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355.q.a.c	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00560000078715	ENSGT00940000162692	ENSGT00390000008853	ENSGT00550000076374	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000163986.a	ENSGT00940000155233.g.a.a.a	ENSGT00940000155233.g.a.b	ENSGT00940000163567.b
Olive baboon	MODERN SPECIES	13	SHROOM3 (ENSPANG00000023419)	CCDC158 (ENSPANG00000018334)	STBD1 (ENSPANG00000040607)	FAM47E (ENSPANG00000029658)	SCARB2 (ENSPANG00000017894)	NUP54 (ENSPANG00000023418)	ART3 (ENSPANG00000025574)	CXCL11 (ENSPANG00000026405)	CXCL10 (ENSPANG00000047240)	CXCL9 (ENSPANG00000038094)	ENSPANG00000043957	SDAD1 (ENSPANG00000016516)	NAAA (ENSPANG00000024557)	PPEF2 (ENSPANG00000007789)	USO1 (ENSPANG00000007788)	G3BP2 (ENSPANG00000020312) ##22	CDKL2 (ENSPANG00000008491)	ENSPANG00000048399	THAP6 (ENSPANG00000016871)	RCHY1 (ENSPANG00000025632)	ENSPANG00000038656	ENSPANG00000042338	PARM1 (ENSPANG00000025635)	BTC (ENSPANG00000038699)	AREG (ENSPANG00000002087)	EREG (ENSPANG00000037670)	EPGN (ENSPANG00000005388)	MTHFD2L (ENSPANG00000016216)	ENSPANG00000043093	PPBP (ENSPANG00000042210)	ENSPANG00000037587
Cercopithecinae_d	ANCESTRAL SPECIES	38	ENSGT00390000013339	ENSGT00940000154632.q.b.b	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355.q.a.c	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00560000078715	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000163986.a	ENSGT00940000155233.g.a.a.a	ENSGT00940000155233.g.a.b	ENSGT00940000163567.b	ENSGT00940000162559
Sooty mangabey	MODERN SPECIES	507	ENSCATG00000029651	CCDC158 (ENSCATG00000044186)	STBD1 (ENSCATG00000042702)	FAM47E (ENSCATG00000042206)	SCARB2 (ENSCATG00000030974)	NUP54 (ENSCATG00000040936)	ART3 (ENSCATG00000045227)	CXCL11 (ENSCATG00000034207)	CXCL10 (ENSCATG00000035830)	CXCL9 (ENSCATG00000038840)	ENSCATG00000029455	ENSCATG00000029565	NAAA (ENSCATG00000034147)	PPEF2 (ENSCATG00000038360)	USO1 (ENSCATG00000034624)	G3BP2 (ENSCATG00000025521) ##22	CDKL2 (ENSCATG00000036221)	ENSCATG00000043482	THAP6 (ENSCATG00000040506)	RCHY1 (ENSCATG00000043887)	PARM1 (ENSCATG00000042547)	BTC (ENSCATG00000038389)	AREG (ENSCATG00000035339)	EREG (ENSCATG00000041247)	EPGN (ENSCATG00000036200)	MTHFD2L (ENSCATG00000045325)	CXCL2 (ENSCATG00000039542)	ENSCATG00000045314	ENSCATG00000040768
Drill	MODERN SPECIES	1484	ENSMLEG00000031918	CCDC158 (ENSMLEG00000029903)	STBD1 (ENSMLEG00000034138)	FAM47E (ENSMLEG00000037896)	SCARB2 (ENSMLEG00000038762)	NUP54 (ENSMLEG00000041798)	ART3 (ENSMLEG00000041797)	CXCL11 (ENSMLEG00000043244)	CXCL10 (ENSMLEG00000039958)	CXCL9 (ENSMLEG00000034876)	ENSMLEG00000041829	SDAD1 (ENSMLEG00000003306)	NAAA (ENSMLEG00000041532)	PPEF2 (ENSMLEG00000039448)	USO1 (ENSMLEG00000039460)	G3BP2 (ENSMLEG00000027756) ##22	CDKL2 (ENSMLEG00000028285)	ENSMLEG00000028222	THAP6 (ENSMLEG00000009627)	RCHY1 (ENSMLEG00000041272)	PARM1 (ENSMLEG00000040470)	BTC (ENSMLEG00000014610)	AREG (ENSMLEG00000029034)	EREG (ENSMLEG00000040114)	EPGN (ENSMLEG00000031301)	MTHFD2L (ENSMLEG00000018876)
Vervet Monkey	MODERN SPECIES	26	SHROOM3 (ENSCSAG00000004597)	ENSCSAG00000004602	CCDC158 (ENSCSAG00000004624)	STBD1 (ENSCSAG00000004633)	FAM47E (ENSCSAG00000004635)	SCARB2 (ENSCSAG00000004640)	NUP54 (ENSCSAG00000004641)	ART3 (ENSCSAG00000004643)	CXCL11 (ENSCSAG00000004644)	CXCL10 (ENSCSAG00000004654)	CXCL9 (ENSCSAG00000004655)	ENSCSAG00000004658	NAAA (ENSCSAG00000004670)	PPEF2 (ENSCSAG00000004678)	USO1 (ENSCSAG00000004690)	G3BP2 (ENSCSAG00000004697) ##22	CDKL2 (ENSCSAG00000004705)	ODAPH (ENSCSAG00000004709)	THAP6 (ENSCSAG00000004714)	RCHY1 (ENSCSAG00000004717)	PARM1 (ENSCSAG00000004720)	BTC (ENSCSAG00000004721)	AREG (ENSCSAG00000004723)	EREG (ENSCSAG00000004730)	EPGN (ENSCSAG00000004735)	MTHFD2L (ENSCSAG00000004738)	ENSCSAG00000004747	CXCL2 (ENSCSAG00000004749)	CXCL3 (ENSCSAG00000004754)	ENSCSAG00000004757	ENSCSAG00000004760
Rhinopithecus	ANCESTRAL SPECIES	44	ENSGT00940000154632.q.b.b	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00950000183198.c.a.b.b	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355.q.a.c	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00560000078715	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000163986.a	ENSGT00940000163567.a	ENSGT00940000155233.g.a	ENSGT00940000163567.b	ENSGT00940000162559
Golden snub-nosed monkey	MODERN SPECIES	2008						ART3 (ENSRROG00000043034)	CXCL11 (ENSRROG00000040073)	ENSRROG00000004079	CXCL10 (ENSRROG00000012630)	CXCL9 (ENSRROG00000035398)	ENSRROG00000035580	ENSRROG00000043773	NAAA (ENSRROG00000029888)	PPEF2 (ENSRROG00000038032)	USO1 (ENSRROG00000031268)	G3BP2 (ENSRROG00000040979) ##22	CDKL2 (ENSRROG00000033885)	ENSRROG00000008411	THAP6 (ENSRROG00000033964)	RCHY1 (ENSRROG00000029555)	PARM1 (ENSRROG00000033952)	BTC (ENSRROG00000034518)	AREG (ENSRROG00000043446)	EREG (ENSRROG00000035935)	EPGN (ENSRROG00000032459)
Black snub-nosed monkey	MODERN SPECIES	547	ENSRBIG00000040524	STBD1 (ENSRBIG00000041441)	FAM47E (ENSRBIG00000038417)	SCARB2 (ENSRBIG00000028203)	NUP54 (ENSRBIG00000010947)	ART3 (ENSRBIG00000031515)	CXCL11 (ENSRBIG00000034782)	ENSRBIG00000016052	ENSRBIG00000036558	CXCL9 (ENSRBIG00000028581)	ENSRBIG00000009408	ENSRBIG00000037088	NAAA (ENSRBIG00000044696)	PPEF2 (ENSRBIG00000044697)	USO1 (ENSRBIG00000041556)	G3BP2 (ENSRBIG00000042968) ##22	CDKL2 (ENSRBIG00000042979)	ENSRBIG00000038454	THAP6 (ENSRBIG00000039515)	RCHY1 (ENSRBIG00000043213)
Hominoidea	ANCESTRAL SPECIES	10	ENSGT00390000013339	ENSGT00940000154632.q.b.b	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355.q.a.a	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00550000076374	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000163986.a	ENSGT00940000163986.b	ENSGT00940000163567	ENSGT00940000162559
Hominidae	ANCESTRAL SPECIES	12	ENSGT00390000013339	ENSGT00940000154632.q.b.b	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355.q.a.a	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00550000076374	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000163986.a	ENSGT00940000163986.b	ENSGT00940000163567	ENSGT00940000162559
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	11	ENSGT00390000013339	ENSGT00940000154632.q.b.b	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355.q.a.a	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00550000076374	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000163986.a	ENSGT00940000163986.b	ENSGT00940000163567	ENSGT00940000162559
Gorilla	MODERN SPECIES	17	SHROOM3 (ENSGGOG00000004907)	CCDC158 (ENSGGOG00000007500)	STBD1 (ENSGGOG00000010777)	FAM47E (ENSGGOG00000009455)	SCARB2 (ENSGGOG00000008387)	NUP54 (ENSGGOG00000008376)	ART3 (ENSGGOG00000011577)	CXCL11 (ENSGGOG00000038857)	CXCL10 (ENSGGOG00000010573)	CXCL9 (ENSGGOG00000004606)	ENSGGOG00000027929	SDAD1 (ENSGGOG00000006441)	ENSGGOG00000014014	ENSGGOG00000006635	USO1 (ENSGGOG00000024897)	G3BP2 (ENSGGOG00000014947) ##22	CDKL2 (ENSGGOG00000015619)	ENSGGOG00000023285	THAP6 (ENSGGOG00000002489)	ENSGGOG00000023433	RCHY1 (ENSGGOG00000022980)	PARM1 (ENSGGOG00000011539)	BTC (ENSGGOG00000013816)	AREG (ENSGGOG00000010528)	ENSGGOG00000003811	EPGN (ENSGGOG00000041029)	MTHFD2L (ENSGGOG00000015326)	CXCL2 (ENSGGOG00000022706)	ENSGGOG00000008738	ENSGGOG00000025940	CXCL5 (ENSGGOG00000009977)
Homo/Pan group	ANCESTRAL SPECIES	10	ENSGT00390000013339	ENSGT00940000154632.q.b.b	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355.q.a.a	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00550000076374	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000163986.a	ENSGT00940000163986.b	ENSGT00940000163567	ENSGT00940000162559
Human	MODERN SPECIES	16	SHROOM3 (ENSG00000138771)	CCDC158 (ENSG00000163749)	STBD1 (ENSG00000118804)	FAM47E-STBD1 (ENSG00000272414)	FAM47E (ENSG00000189157)	SCARB2 (ENSG00000138760)	NUP54 (ENSG00000138750)	CXCL11 (ENSG00000169248)	CXCL10 (ENSG00000169245)	ART3 (ENSG00000156219)	CXCL9 (ENSG00000138755)	SDAD1 (ENSG00000198301)	NAAA (ENSG00000138744)	PPEF2 (ENSG00000156194)	USO1 (ENSG00000138768)	G3BP2 (ENSG00000138757) ##22	CDKL2 (ENSG00000138769)	ODAPH (ENSG00000174792)	THAP6 (ENSG00000174796)	RCHY1 (ENSG00000163743)	PARM1 (ENSG00000169116)	BTC (ENSG00000174808)	AREG (ENSG00000109321)	EREG (ENSG00000124882)	EPGN (ENSG00000182585)	MTHFD2L (ENSG00000163738)	CXCL2 (ENSG00000081041)	CXCL3 (ENSG00000163734)	CXCL5 (ENSG00000163735)	PPBP (ENSG00000163736)	ENSG00000288796
Pan	ANCESTRAL SPECIES	7	ENSGT00390000013339	ENSGT00940000154632.q.b.b	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355.q.a.a	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00550000076374	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000163986.a	ENSGT00940000163567	ENSGT00940000162559	ENSGT00940000163666.a
Bonobo	MODERN SPECIES	17	CCDC158 (ENSPPAG00000043751)	ENSPPAG00000038404	STBD1 (ENSPPAG00000033341)	FAM47E (ENSPPAG00000040715)	SCARB2 (ENSPPAG00000033699)	NUP54 (ENSPPAG00000040336)	ART3 (ENSPPAG00000037879)	CXCL11 (ENSPPAG00000031392)	CXCL10 (ENSPPAG00000038167)	CXCL9 (ENSPPAG00000039586)	SDAD1 (ENSPPAG00000039003)	ENSPPAG00000041155	NAAA (ENSPPAG00000041253)	PPEF2 (ENSPPAG00000029902)	USO1 (ENSPPAG00000008706)	G3BP2 (ENSPPAG00000042327) ##22	CDKL2 (ENSPPAG00000027935)	ODAPH (ENSPPAG00000036734)	THAP6 (ENSPPAG00000034918)	RCHY1 (ENSPPAG00000030307)	ENSPPAG00000013815	PARM1 (ENSPPAG00000002112)	BTC (ENSPPAG00000033009)	AREG (ENSPPAG00000042381)	EREG (ENSPPAG00000042641)	ENSPPAG00000043693	MTHFD2L (ENSPPAG00000037827)	CXCL2 (ENSPPAG00000038628)	ENSPPAG00000019521	CXCL5 (ENSPPAG00000034610)	PPBP (ENSPPAG00000042155)
Chimpanzee	MODERN SPECIES	17	SHROOM3 (ENSPTRG00000016190)	CCDC158 (ENSPTRG00000016189)	STBD1 (ENSPTRG00000016188)	FAM47E (ENSPTRG00000016187)	SCARB2 (ENSPTRG00000016186)	NUP54 (ENSPTRG00000016185)	ART3 (ENSPTRG00000016184)	CXCL11 (ENSPTRG00000016183)	CXCL10 (ENSPTRG00000016182)	CXCL9 (ENSPTRG00000016181)	SDAD1 (ENSPTRG00000024399)	ENSPTRG00000052209	NAAA (ENSPTRG00000016178)	PPEF2 (ENSPTRG00000016177)	USO1 (ENSPTRG00000016176)	G3BP2 (ENSPTRG00000016175) ##22	CDKL2 (ENSPTRG00000016174)	ODAPH (ENSPTRG00000016173)	THAP6 (ENSPTRG00000039569)	RCHY1 (ENSPTRG00000016170)	ENSPTRG00000043030	PARM1 (ENSPTRG00000031197)	BTC (ENSPTRG00000016168)	AREG (ENSPTRG00000016167)	EREG (ENSPTRG00000016166)	EPGN (ENSPTRG00000016165)	MTHFD2L (ENSPTRG00000016164)	CXCL2 (ENSPTRG00000016163)	ENSPTRG00000051535	CXCL3 (ENSPTRG00000016161)	CXCL5 (ENSPTRG00000016160)
Orangutan	MODERN SPECIES	17	SHROOM3 (ENSPPYG00000014862)	CCDC158 (ENSPPYG00000014861)	STBD1 (ENSPPYG00000029580)	FAM47E (ENSPPYG00000014860)	SCARB2 (ENSPPYG00000014859)	NUP54 (ENSPPYG00000014858)	ART3 (ENSPPYG00000014857)	CXCL11 (ENSPPYG00000036315)	CXCL10 (ENSPPYG00000014854)	CXCL9 (ENSPPYG00000014853)	ENSPPYG00000014851	SDAD1 (ENSPPYG00000014852)	NAAA (ENSPPYG00000014850)	PPEF2 (ENSPPYG00000014849)	USO1 (ENSPPYG00000014847)	G3BP2 (ENSPPYG00000014846) ##22	CDKL2 (ENSPPYG00000014845)	ENSPPYG00000014844	THAP6 (ENSPPYG00000014843)	RCHY1 (ENSPPYG00000014841)	ENSPPYG00000014842	PARM1 (ENSPPYG00000014840)	BTC (ENSPPYG00000014839)	AREG (ENSPPYG00000014838)	EREG (ENSPPYG00000014837)	EPGN (ENSPPYG00000014836)	MTHFD2L (ENSPPYG00000014835)	CXCL2 (ENSPPYG00000036559)	CXCL3 (ENSPPYG00000030966)	CXCL5 (ENSPPYG00000040700)	PPBP (ENSPPYG00000014831)
Gibbon	MODERN SPECIES	24	ENSNLEG00000031212	CCDC158 (ENSNLEG00000008104)	STBD1 (ENSNLEG00000008103)	FAM47E (ENSNLEG00000008096)	SCARB2 (ENSNLEG00000008090)	NUP54 (ENSNLEG00000008073)	CXCL10 (ENSNLEG00000008066)	CXCL9 (ENSNLEG00000008060)	ART3 (ENSNLEG00000008044)	CXCL11 (ENSNLEG00000008037)	ENSNLEG00000027034	ENSNLEG00000008036	NAAA (ENSNLEG00000008032)	PPEF2 (ENSNLEG00000008021)	USO1 (ENSNLEG00000008005)	G3BP2 (ENSNLEG00000007996) ##22	CDKL2 (ENSNLEG00000007984)	ENSNLEG00000007979	THAP6 (ENSNLEG00000007973)	RCHY1 (ENSNLEG00000029826)	PARM1 (ENSNLEG00000030727)	BTC (ENSNLEG00000007948)	AREG (ENSNLEG00000007940)	EREG (ENSNLEG00000007937)	EPGN (ENSNLEG00000029197)	MTHFD2L (ENSNLEG00000035952)	CXCL2 (ENSNLEG00000007933)	ENSNLEG00000034140	CXCL3 (ENSNLEG00000007930)	CXCL5 (ENSNLEG00000007929)	PPBP (ENSNLEG00000007928)
Platyrrhini	DUPLICATION
Platyrrhini	ANCESTRAL SPECIES	5	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355.q.a	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT01100000267099	ENSGT00390000017018.b	ENSGT00390000011365.b.a ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00550000076374	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000163986	ENSGT00940000155233	ENSGT00940000163567	ENSGT00940000162559
Cebidae	ANCESTRAL SPECIES	4	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355.q.a	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT01100000267099	ENSGT00390000017018.b	ENSGT00390000011365.b.a ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00560000078715	ENSGT00940000162692	ENSGT00390000008853	ENSGT00550000076374	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000163986	ENSGT00940000155233	ENSGT00940000163567
Cebidae_a	ANCESTRAL SPECIES	21	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355.q.a	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT01100000267099	ENSGT00390000017018.b	ENSGT00390000011365.b.a ##22	ENSGT00940000160368	ENSGT00560000078715	ENSGT00940000162692	ENSGT00390000008853	ENSGT00550000076374	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000163986	ENSGT00940000163567	ENSGT00940000162559	ENSGT00940000163666
Capuchin	DUPLICATION
Capuchin	MODERN SPECIES	536	CCDC158 (ENSCCAG00000034839)	STBD1 (ENSCCAG00000008849)	FAM47E (ENSCCAG00000032649)	SCARB2 (ENSCCAG00000025609)	NUP54 (ENSCCAG00000037093)	ART3 (ENSCCAG00000019239)	CXCL11 (ENSCCAG00000024245)	CXCL10 (ENSCCAG00000029689)	CXCL9 (ENSCCAG00000024472)	SDAD1 (ENSCCAG00000033903)	ENSCCAG00000021489	NAAA (ENSCCAG00000021356)	PPEF2 (ENSCCAG00000027912)	ENSCCAG00000031910	USO1 (ENSCCAG00000038078)	ENSCCAG00000024593 ##22	CDKL2 (ENSCCAG00000031852)	ENSCCAG00000021891	THAP6 (ENSCCAG00000012378)	RCHY1 (ENSCCAG00000022130)	ENSCCAG00000021893	PARM1 (ENSCCAG00000026270)	BTC (ENSCCAG00000037960)
Capuchin	MODERN SPECIES	791																ENSCCAG00000002779 ##22	ENSCCAG00000020770	ENSCCAG00000021347	ENSCCAG00000023080
Bolivian squirrel monkey	MODERN SPECIES	89	ENSSBOG00000018894	MROH8 (ENSSBOG00000034905)	RPN2 (ENSSBOG00000028730)	FAM47E (ENSSBOG00000031290)	SCARB2 (ENSSBOG00000020301)	NUP54 (ENSSBOG00000013488)	ART3 (ENSSBOG00000026696)	CXCL11 (ENSSBOG00000022539)	CXCL10 (ENSSBOG00000017069)	CXCL9 (ENSSBOG00000033691)	ENSSBOG00000021225	SDAD1 (ENSSBOG00000030348)	NAAA (ENSSBOG00000023819)	PPEF2 (ENSSBOG00000015019)	USO1 (ENSSBOG00000027001)	ENSSBOG00000023693 ##22	CDKL2 (ENSSBOG00000035557)	ENSSBOG00000030615	THAP6 (ENSSBOG00000027530)	ENSSBOG00000023675	RCHY1 (ENSSBOG00000016835)	ENSSBOG00000019810	PARM1 (ENSSBOG00000034268)	BTC (ENSSBOG00000002013)	ENSSBOG00000014814	AREG (ENSSBOG00000005982)	EREG (ENSSBOG00000022697)	EPGN (ENSSBOG00000034341)	MTHFD2L (ENSSBOG00000015048)	ENSSBOG00000032845	CXCL5 (ENSSBOG00000033036)
Marmoset	MODERN SPECIES	15	ENSCJAG00000083615	STBD1 (ENSCJAG00000014639)	CCDC158 (ENSCJAG00000014647)	FAM47E (ENSCJAG00000036537)	NUP54 (ENSCJAG00000014583)	ART3 (ENSCJAG00000014490)	CXCL11 (ENSCJAG00000014481)	CXCL10 (ENSCJAG00000072216)	ENSCJAG00000080554	CXCL9 (ENSCJAG00000069895)	SDAD1 (ENSCJAG00000014396)	ENSCJAG00000038293	NAAA (ENSCJAG00000014374)	PPEF2 (ENSCJAG00000014333)	USO1 (ENSCJAG00000019852)	G3BP2 (ENSCJAG00000019897) ##22	CDKL2 (ENSCJAG00000019926)	ODAPH (ENSCJAG00000019939)	ENSCJAG00000082589	THAP6 (ENSCJAG00000019942)	RCHY1 (ENSCJAG00000019952)	PARM1 (ENSCJAG00000019977)	BTC (ENSCJAG00000060942)	ENSCJAG00000086232	ENSCJAG00000080891	AREG (ENSCJAG00000013848)	ENSCJAG00000073051	EREG (ENSCJAG00000079559)	ENSCJAG00000074343 #10	EPGN (ENSCJAG00000013872)	MTHFD2L (ENSCJAG00000013883)
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	406	CCDC158 (ENSANAG00000025294)	STBD1 (ENSANAG00000023859)	FAM47E (ENSANAG00000028121)	SCARB2 (ENSANAG00000033586)	NUP54 (ENSANAG00000027954)	ART3 (ENSANAG00000021283)	CXCL11 (ENSANAG00000029442)	CXCL10 (ENSANAG00000022424)	CXCL9 (ENSANAG00000030120)	SDAD1 (ENSANAG00000037473)	ENSANAG00000020994	NAAA (ENSANAG00000032130)	PPEF2 (ENSANAG00000031370)	ENSANAG00000036701	USO1 (ENSANAG00000028438)	ENSANAG00000032089 ##22	CDKL2 (ENSANAG00000028126)	ODAPH (ENSANAG00000034490)	THAP6 (ENSANAG00000023840)	RCHY1 (ENSANAG00000031778)	ENSANAG00000032049	ENSANAG00000019907	PARM1 (ENSANAG00000000060)	BTC (ENSANAG00000024898)
Mas night monkey	MODERN SPECIES	1003	EPHA7 (ENSANAG00000025851)	MAP3K7 (ENSANAG00000026953)	BACH2 (ENSANAG00000020444)	GJA10 (ENSANAG00000024124)	CASP8AP2 (ENSANAG00000021679)	MDN1 (ENSANAG00000034484)	LYRM2 (ENSANAG00000033734)	ANKRD6 (ENSANAG00000035580)	ENSANAG00000035891	RRAGD (ENSANAG00000023087)	UBE2J1 (ENSANAG00000023523)	GABRR2 (ENSANAG00000027407)	PM20D2 (ENSANAG00000028063)	SRSF12 (ENSANAG00000023238)	ENSANAG00000027710	ENSANAG00000001631 ##22	RNGTT (ENSANAG00000022118)	ENSANAG00000022019	SPACA1 (ENSANAG00000022733)	ENSANAG00000027715	AKIRIN2 (ENSANAG00000030566)	ORC3 (ENSANAG00000038422)	RARS2 (ENSANAG00000027711)	SLC35A1 (ENSANAG00000023414)	ENSANAG00000036217	C6orf163 (ENSANAG00000020423)	SMIM8 (ENSANAG00000031913)	ZNF292 (ENSANAG00000023824)	CGA (ENSANAG00000025451)	HTR1E (ENSANAG00000020260)	ENSANAG00000026597
Platyrrhini	ANCESTRAL SPECIES	33	ENSGT00840000130063	ENSGT00940000153097.B.a.a	ENSGT00940000153097.B.a.b.c	ENSGT00390000001055	ENSGT00940000153097.B.a.b.d	ENSGT00940000159912	ENSGT00530000063540.a.a	ENSGT00950000182835.c.c	ENSGT00940000162763	ENSGT00940000161795	ENSGT00940000162980	ENSGT00940000155877.i.a.a	ENSGT00940000159438	ENSGT00390000012692	ENSGT00940000160145.b	ENSGT00390000011365.b.b ##22	ENSGT00940000155373.f	ENSGT00530000063168.a.a.b	ENSGT00940000157847	ENSGT00940000156319	ENSGT00940000155170	ENSGT00390000010825.a	ENSGT00940000155614	ENSGT00940000159667	ENSGT00940000161236.a.a	ENSGT00940000162496	ENSGT00890000139436.A.b	ENSGT00510000049526	ENSGT00940000153097.A.e.a.b.a.b	ENSGT00940000153097.A.e.a.b.b.a	ENSGT00950000183945
Cebidae	ANCESTRAL SPECIES	18	ENSGT00940000153097.B.a.b.c.a	ENSGT00940000153097.B.a.a	ENSGT00940000153097.B.a.b.c.b	ENSGT00390000001055	ENSGT00940000153097.B.a.b.d	ENSGT00940000159912	ENSGT00530000063540.a.a	ENSGT00950000182835.c.c	ENSGT00940000162763	ENSGT00940000161795	ENSGT00940000162980	ENSGT00940000155877.i.a.a	ENSGT00940000159438	ENSGT00390000012692	ENSGT00940000160145.b	ENSGT00390000011365.b.b ##22	ENSGT00940000155373.f	ENSGT00530000063168.a.a.b	ENSGT00940000157847	ENSGT00940000156319	ENSGT00940000155170	ENSGT00390000010825.a	ENSGT00940000155614	ENSGT00940000159667	ENSGT00940000161236.a.a	ENSGT00940000162496	ENSGT00890000139436.A.b	ENSGT00510000049526	ENSGT00940000153097.A.e.a.b.a.b	ENSGT00940000153097.A.e.a.b.b.a	ENSGT00950000183945
Cebidae_a	ANCESTRAL SPECIES	118										ENSGT00940000162980	ENSGT00940000161795	ENSGT00940000155877.i.a.a	ENSGT00940000159438	ENSGT00390000012692	ENSGT00940000160145.b	ENSGT00390000011365.b.b ##22	ENSGT00940000155373.f	ENSGT00530000063168.a.a.b	ENSGT00940000157847	ENSGT00940000156319	ENSGT00940000155170	ENSGT00390000010825.a	ENSGT00940000155614	ENSGT00940000159667	ENSGT00940000161236.a.a	ENSGT00940000162496	ENSGT00890000139436.A.b	ENSGT00940000153097.A.e.a.a.a	ENSGT00940000153097.A.e.a.b.a.b	ENSGT00940000153097.A.e.a.b.b.a	ENSGT00950000183945
Capuchin	MODERN SPECIES	755											MAGED2 (ENSCCAG00000034934)	GNL3L (ENSCCAG00000023052)	FGD1 (ENSCCAG00000031347)	TSR2 (ENSCCAG00000025421)	ENSCCAG00000025263	ENSCCAG00000030724 ##22	ENSCCAG00000024746	WNK3 (ENSCCAG00000021463)	FAM120C (ENSCCAG00000027648)	PHF8 (ENSCCAG00000020967)
Bolivian squirrel monkey	MODERN SPECIES	230	ENSSBOG00000022981	ENSSBOG00000033527	ALAS2 (ENSSBOG00000030120)	APEX2 (ENSSBOG00000030500)	PFKFB1 (ENSSBOG00000026646)	TRO (ENSSBOG00000022559)	ENSSBOG00000026792	ENSSBOG00000026032	ENSSBOG00000025146	ITIH6 (ENSSBOG00000026864)	ENSSBOG00000007626	ENSSBOG00000029805	FGD1 (ENSSBOG00000030775)	TSR2 (ENSSBOG00000019737)	WNK3 (ENSSBOG00000020896)	ENSSBOG00000027791 ##22	ENSSBOG00000029988	FAM120C (ENSSBOG00000035457)	PHF8 (ENSSBOG00000033359)	HUWE1 (ENSSBOG00000018862)	HSD17B10 (ENSSBOG00000027007)	RIBC1 (ENSSBOG00000027804)	SMC1A (ENSSBOG00000033095)	IQSEC2 (ENSSBOG00000035604)	KDM5C (ENSSBOG00000035565)	TSPYL2 (ENSSBOG00000026060)	GPR173 (ENSSBOG00000019022)	XAGE3 (ENSSBOG00000030976)	ENSSBOG00000021799	XAGE5 (ENSSBOG00000014683)	ENSSBOG00000034260
Mas night monkey	MODERN SPECIES	547	PAGE3 (ENSANAG00000027674)	ENSANAG00000022117	FAM104B (ENSANAG00000026192)	ENSANAG00000036702	ALAS2 (ENSANAG00000022690)	ENSANAG00000021907	PFKFB1 (ENSANAG00000024490)	TRO (ENSANAG00000031246)	MAGED2 (ENSANAG00000030510)	ITIH6 (ENSANAG00000034254)	ENSANAG00000023117	ENSANAG00000015501	FGD1 (ENSANAG00000023583)	TSR2 (ENSANAG00000000062)	WNK3 (ENSANAG00000023178)	ENSANAG00000010465 ##22	ENSANAG00000030716	FAM120C (ENSANAG00000020909)	PHF8 (ENSANAG00000021151)	HUWE1 (ENSANAG00000029359)
Tarsier	MODERN SPECIES	6355								ENSTSYG00000027544	CXCL10 (ENSTSYG00000000810)	CXCL9 (ENSTSYG00000036524)	ENSTSYG00000028622	SDAD1 (ENSTSYG00000000634)	NAAA (ENSTSYG00000001210)	PPEF2 (ENSTSYG00000026652)	USO1 (ENSTSYG00000011363)	G3BP2 (ENSTSYG00000011860) ##22	CDKL2 (ENSTSYG00000011646)	CUNH4orf26 (ENSTSYG00000000138)	THAP6 (ENSTSYG00000031064)	RCHY1 (ENSTSYG00000013138)
Strepsirrhini	ANCESTRAL SPECIES	18	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00560000078715	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000163368	ENSGT00940000163666	ENSGT00940000162559.g
Lemuriformes	ANCESTRAL SPECIES	39	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00560000078715	ENSGT00940000162692	ENSGT00390000008853	ENSGT01030000235199	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000163368	ENSGT00940000163666	ENSGT00940000162559.g
Mouse lemur	MODERN SPECIES	18	STBD1 (ENSMICG00000036847)	FAM47E (ENSMICG00000017892)	SCARB2 (ENSMICG00000017891)	NUP54 (ENSMICG00000000932)	ART3 (ENSMICG00000000929)	ENSMICG00000034311	ENSMICG00000000084	CXCL11 (ENSMICG00000029161)	CXCL10 (ENSMICG00000032301)	CXCL9 (ENSMICG00000047710)	SDAD1 (ENSMICG00000006682)	ENSMICG00000006676	NAAA (ENSMICG00000006663)	PPEF2 (ENSMICG00000028039)	USO1 (ENSMICG00000006635)	G3BP2 (ENSMICG00000007795) ##22	CDKL2 (ENSMICG00000031003)	ENSMICG00000027502	THAP6 (ENSMICG00000009485)	RCHY1 (ENSMICG00000009463)	ENSMICG00000044073	ENSMICG00000026631	BTC (ENSMICG00000029012)	AREG (ENSMICG00000012594)	EREG (ENSMICG00000030227)	EPGN (ENSMICG00000003871)	MTHFD2L (ENSMICG00000042227)	ENSMICG00000046173	ENSMICG00000032999	ENSMICG00000030000	CXCL8 (ENSMICG00000044277)
Lemuriformes_a	ANCESTRAL SPECIES	30	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00390000008853	ENSGT01030000235199	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000163666	ENSGT00940000162559.g	ENSGT00940000162749	ENSGT00940000160757	ENSGT00940000159886
Greater bamboo lemur	MODERN SPECIES	178	SHROOM3 (ENSPSMG00000011950)	CCDC158 (ENSPSMG00000011976)	STBD1 (ENSPSMG00000011985)	ENSPSMG00000011993	SCARB2 (ENSPSMG00000012135)	NUP54 (ENSPSMG00000012263)	ART3 (ENSPSMG00000012291)	CXCL11 (ENSPSMG00000012301)	CXCL10 (ENSPSMG00000012310)	CXCL9 (ENSPSMG00000012318)	SDAD1 (ENSPSMG00000012385)	ENSPSMG00000012412	NAAA (ENSPSMG00000012437)	PPEF2 (ENSPSMG00000012453)	USO1 (ENSPSMG00000012635)	G3BP2 (ENSPSMG00000012874) ##22	CDKL2 (ENSPSMG00000013010)	ODAPH (ENSPSMG00000013016)	ENSPSMG00000013020	ENSPSMG00000013026	BTC (ENSPSMG00000013030)	AREG (ENSPSMG00000013044)	EREG (ENSPSMG00000013057)	EPGN (ENSPSMG00000013068)	MTHFD2L (ENSPSMG00000013085)	ENSPSMG00000013096	ENSPSMG00000013108	ENSPSMG00000013116	ENSPSMG00000013126	CXCL6 (ENSPSMG00000013137)	CXCL8 (ENSPSMG00000013144)
Coquerels sifaka	MODERN SPECIES	484	SHROOM3 (ENSPCOG00000022412)	CCDC158 (ENSPCOG00000014409)	STBD1 (ENSPCOG00000017709)	FAM47E (ENSPCOG00000025295)	SCARB2 (ENSPCOG00000026487)	ENSPCOG00000023550	ART3 (ENSPCOG00000023482)	CXCL11 (ENSPCOG00000000044)	CXCL10 (ENSPCOG00000024365)	CXCL9 (ENSPCOG00000023984)	SDAD1 (ENSPCOG00000017368)	ENSPCOG00000027086	NAAA (ENSPCOG00000018692)	PPEF2 (ENSPCOG00000025002)	USO1 (ENSPCOG00000022723)	G3BP2 (ENSPCOG00000015114) ##22	ENSPCOG00000021950
Bushbaby	MODERN SPECIES	154	SOWAHB (ENSOGAG00000004162)	ENSOGAG00000030730	SHROOM3 (ENSOGAG00000004154)	CCDC158 (ENSOGAG00000016358)	STBD1 (ENSOGAG00000016357)	FAM47E (ENSOGAG00000016355)	SCARB2 (ENSOGAG00000016348)	NUP54 (ENSOGAG00000016341)	ART3 (ENSOGAG00000032958)	CXCL10 (ENSOGAG00000032136)	CXCL9 (ENSOGAG00000011627)	ENSOGAG00000011621	NAAA (ENSOGAG00000014120)	PPEF2 (ENSOGAG00000014111)	USO1 (ENSOGAG00000000158)	G3BP2 (ENSOGAG00000000157) ##22	CDKL2 (ENSOGAG00000011801)	THAP6 (ENSOGAG00000011799)	RCHY1 (ENSOGAG00000024237)	PARM1 (ENSOGAG00000026750)	BTC (ENSOGAG00000033777)	AREG (ENSOGAG00000027839)	EREG (ENSOGAG00000002739)	EPGN (ENSOGAG00000015552)	MTHFD2L (ENSOGAG00000002738)	ENSOGAG00000002735	CXCL8 (ENSOGAG00000030600)	ENSOGAG00000030020	ENSOGAG00000010694	ENSOGAG00000010692	ENSOGAG00000032507
Euarchontoglires_A	ANCESTRAL SPECIES	9	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00900000143472	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000163368	ENSGT00940000162559	ENSGT00940000162749
Tree shrew	DUPLICATION
Tree shrew	MODERN SPECIES	1876																ENSTBEG00000012323 ##22	CDKL2 (ENSTBEG00000012147)
Tree shrew	MODERN SPECIES	6587																ENSTBEG00000008258 ##22
Glires	ANCESTRAL SPECIES	8	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00900000143472	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000163368	ENSGT00940000162559	ENSGT00940000162749
Lagomorpha	ANCESTRAL SPECIES	42	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00940000165184	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000163368	ENSGT00940000163567	ENSGT00940000160757
Rabbit	MODERN SPECIES	6	ENSOCUG00000033565	CCDC158 (ENSOCUG00000013553)	STBD1 (ENSOCUG00000025567)	ENSOCUG00000011382	SCARB2 (ENSOCUG00000003388)	NUP54 (ENSOCUG00000003379)	ART3 (ENSOCUG00000003372)	CXCL11 (ENSOCUG00000026515)	CXCL10 (ENSOCUG00000016280)	CXCL9 (ENSOCUG00000029588)	SDAD1 (ENSOCUG00000026953)	ENSOCUG00000035668	NAAA (ENSOCUG00000014661)	PPEF2 (ENSOCUG00000014650)	USO1 (ENSOCUG00000014641)	G3BP2 (ENSOCUG00000003262) ##22	CDKL2 (ENSOCUG00000003254)	ODAPH (ENSOCUG00000034520)	THAP6 (ENSOCUG00000000368)	RCHY1 (ENSOCUG00000000365)	ENSOCUG00000030795	PARM1 (ENSOCUG00000001337)	BTC (ENSOCUG00000003214)	AREG (ENSOCUG00000016286)	EREG (ENSOCUG00000016277)	EPGN (ENSOCUG00000016270)	MTHFD2L (ENSOCUG00000009647)	ENSOCUG00000024883	ENSOCUG00000037192	ENSOCUG00000024425	ENSOCUG00000017941
Pika	MODERN SPECIES	7403																G3BP2 (ENSOPRG00000006307) ##22
Rodentia	ANCESTRAL SPECIES	13	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00900000143472	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000163368	ENSGT00940000162559	ENSGT00940000162749
Rodentia_A	ANCESTRAL SPECIES	20	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00900000143472	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000163368	ENSGT00940000162559	ENSGT00940000162749
Sciuridae	ANCESTRAL SPECIES	19	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00900000143472	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000164504	ENSGT00940000163666	ENSGT00940000162559
Marmotini	ANCESTRAL SPECIES	47	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00900000143472	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000163368.c.a	ENSGT00940000163368.c.b	ENSGT00940000162559
Marmotini_b	ANCESTRAL SPECIES	73	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00390000012635.a.a	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00900000143472	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233.r	ENSGT00940000155233.q.a	ENSGT00940000163368.c.a	ENSGT00940000163368.c.b
Arctic ground squirrel	MODERN SPECIES	382																G3BP2 (ENSUPAG00010004519) ##22	ENSUPAG00010004682	CDKL2 (ENSUPAG00010004686)	ODAPH (ENSUPAG00010004705)	THAP6 (ENSUPAG00010004708)	RCHY1 (ENSUPAG00010004710)	PARM1 (ENSUPAG00010004735)	BTC (ENSUPAG00010004737)	AREG (ENSUPAG00010004744)	EREG (ENSUPAG00010004749)	EPGN (ENSUPAG00010004756)	MTHFD2L (ENSUPAG00010004760)	ENSUPAG00010004790	ENSUPAG00010004798	ENSUPAG00010004807	ENSUPAG00010004820
Squirrel	MODERN SPECIES	198													ENSSTOG00000027955	PPEF2 (ENSSTOG00000009657)	USO1 (ENSSTOG00000012985)	G3BP2 (ENSSTOG00000012975) ##22	CDKL2 (ENSSTOG00000012968)	THAP6 (ENSSTOG00000012959)	RCHY1 (ENSSTOG00000012945)	PARM1 (ENSSTOG00000025678)	BTC (ENSSTOG00000014018)	AREG (ENSSTOG00000008661)	EREG (ENSSTOG00000000465)	EPGN (ENSSTOG00000003148)	MTHFD2L (ENSSTOG00000003140)	ENSSTOG00000013338	ENSSTOG00000034113	ENSSTOG00000033719	ENSSTOG00000014918	PPBP (ENSSTOG00000023838)	CXCL6 (ENSSTOG00000032569)
Alpin marmot	MODERN SPECIES	59	SHROOM3 (ENSMMMG00000006413)	CCDC158 (ENSMMMG00000006444)	STBD1 (ENSMMMG00000006497)	ENSMMMG00000006501	SCARB2 (ENSMMMG00000006532)	NUP54 (ENSMMMG00000006548)	ART3 (ENSMMMG00000006568)	CXCL11 (ENSMMMG00000006576)	CXCL10 (ENSMMMG00000006592)	CXCL9 (ENSMMMG00000006597)	SDAD1 (ENSMMMG00000006613)	ENSMMMG00000006662	NAAA (ENSMMMG00000006675)	PPEF2 (ENSMMMG00000006682)	USO1 (ENSMMMG00000006730)	G3BP2 (ENSMMMG00000006811) ##22	CDKL2 (ENSMMMG00000006882)	ODAPH (ENSMMMG00000006911)	ENSMMMG00000006923	RCHY1 (ENSMMMG00000006926)	ENSMMMG00000006953	PARM1 (ENSMMMG00000006960)	BTC (ENSMMMG00000006965)	AREG (ENSMMMG00000006974)	EREG (ENSMMMG00000006986)	EPGN (ENSMMMG00000006994)	MTHFD2L (ENSMMMG00000007011)	ENSMMMG00000007039	ENSMMMG00000007047	PKD2 (ENSMMMG00000007053)	SPP1 (ENSMMMG00000007069)
Eurasian red squirrel	MODERN SPECIES	18	STBD1 (ENSSVLG00005011092)	ENSSVLG00005011125	SCARB2 (ENSSVLG00005011224)	ENSSVLG00005011467	NUP54 (ENSSVLG00005011566)	ART3 (ENSSVLG00005011676)	CXCL11 (ENSSVLG00005011884)	CXCL10 (ENSSVLG00005011938)	CXCL9 (ENSSVLG00005011992)	SDAD1 (ENSSVLG00005012089)	ENSSVLG00005012183	ENSSVLG00005012239	PPEF2 (ENSSVLG00005012304)	USO1 (ENSSVLG00005012629)	ENSSVLG00005012750	G3BP2 (ENSSVLG00005012820) ##22	CDKL2 (ENSSVLG00005012946)	ENSSVLG00005013076	THAP6 (ENSSVLG00005013186)	RCHY1 (ENSSVLG00005013675)	PARM1 (ENSSVLG00005013816)	BTC (ENSSVLG00005013882)	AREG (ENSSVLG00005013932)	EREG (ENSSVLG00005014020)	EPGN (ENSSVLG00005014137)	MTHFD2L (ENSSVLG00005014422)	ENSSVLG00005014676	ENSSVLG00005014763	CXCL1 (ENSSVLG00005014864)	ENSSVLG00005014915	PPBP (ENSSVLG00005014969)
Hystricomorpha	DUPLICATION
Hystricomorpha	ANCESTRAL SPECIES																	ENSGT00390000011365.b.e ##22
Hystricomorpha_a	ANCESTRAL SPECIES																	ENSGT00390000011365.b.e ##22
Hystricomorpha_b	ANCESTRAL SPECIES																	ENSGT00390000011365.b.e ##22
Degu	MODERN SPECIES	69	ENSODEG00000006945	HSD17B13 (ENSODEG00000008266)	HSD17B11 (ENSODEG00000007389)	ENSODEG00000019391	ENSODEG00000007537	SPARCL1 (ENSODEG00000008441) ##20	DMP1 (ENSODEG00000007123)	ENSODEG00000008931	IBSP (ENSODEG00000008571)	ENSODEG00000006542	SPP1 (ENSODEG00000007013)	PKD2 (ENSODEG00000007292)	PPEF2 (ENSODEG00000007849)	ENSODEG00000007348	USO1 (ENSODEG00000007153)	ENSODEG00000006601 ##22	CDKL2 (ENSODEG00000007091)	ENSODEG00000006617	ENSODEG00000007180	RCHY1 (ENSODEG00000010052)	PARM1 (ENSODEG00000006846)	BTC (ENSODEG00000009726)	AREG (ENSODEG00000006514)	EREG (ENSODEG00000006095)	EPGN (ENSODEG00000006108)	MTHFD2L (ENSODEG00000007207)	ENSODEG00000006710	ENSODEG00000007147	ENSODEG00000009042
Hystricomorpha	ANCESTRAL SPECIES	61	ENSGT00950000182974.a.b	ENSGT00940000157583	ENSGT00940000161743	ENSGT00940000160856	ENSGT00390000017405	ENSGT00700000106112	ENSGT00510000046787.e.a ##20	ENSGT00730000111489	ENSGT00730000111375	ENSGT00390000002485	ENSGT00390000010702	ENSGT00390000002509	ENSGT00940000159025	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b.f ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000162559	ENSGT00940000162749	ENSGT00940000160757	ENSGT00940000153165.a.a.c.a.i.b.c
Hystricomorpha_a	ANCESTRAL SPECIES	68	ENSGT00950000182808.a.a.a.a.b	ENSGT00390000015549	ENSGT00950000182974.a.b	ENSGT00940000157583	ENSGT00940000161743	ENSGT00940000160856	ENSGT00390000017405	ENSGT00700000106112	ENSGT00510000046787.e.a ##20	ENSGT00730000111375	ENSGT00390000002485	ENSGT00390000002509	ENSGT00940000159025	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b.f ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000162559	ENSGT00940000163567	ENSGT00940000162749	ENSGT00940000160757
Guinea pig	MODERN SPECIES	33	SLC10A6 (ENSCPOG00000010363)	C4orf36 (ENSCPOG00000003504)	ENSCPOG00000024866	AFF1 (ENSCPOG00000034568)	KLHL8 (ENSCPOG00000001491)	HSD17B13 (ENSCPOG00000014141)	HSD17B11 (ENSCPOG00000038248)	NUDT9 (ENSCPOG00000009689)	SPARCL1 (ENSCPOG00000001455) ##20	DMP1 (ENSCPOG00000009517)	IBSP (ENSCPOG00000035416)	SPP1 (ENSCPOG00000014587)	PKD2 (ENSCPOG00000014588)	PPEF2 (ENSCPOG00000007202)	USO1 (ENSCPOG00000012058)	G3BP2 (ENSCPOG00000012052) ##22	CDKL2 (ENSCPOG00000000399)
Hystricomorpha_b	ANCESTRAL SPECIES	45	ENSGT00940000155133.b	ENSGT00950000182808.a.a.a.a.b	ENSGT00390000015549	ENSGT00950000182974.a.b	ENSGT00940000157583	ENSGT00940000161743	ENSGT00940000160856	ENSGT00390000017405	ENSGT00700000106112	ENSGT00510000046787.e.a ##20	ENSGT00730000111375	ENSGT00390000002485	ENSGT00390000002509	ENSGT00940000159025	ENSGT00390000017018.b	ENSGT00390000011365.b.f ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000162559	ENSGT00940000163567	ENSGT00940000160757	ENSGT00940000153165.a.a.c.a.i.b.c
Long-tailed chinchilla	MODERN SPECIES	181	SLC10A6 (ENSCLAG00000006091)	C4orf36 (ENSCLAG00000005964)	AFF1 (ENSCLAG00000005537)	KLHL8 (ENSCLAG00000005233)	HSD17B13 (ENSCLAG00000004944)	HSD17B11 (ENSCLAG00000004877)	NUDT9 (ENSCLAG00000004808)	ENSCLAG00000004292	SPARCL1 (ENSCLAG00000004209) ##20	DMP1 (ENSCLAG00000004368)	IBSP (ENSCLAG00000004300)	SPP1 (ENSCLAG00000004133)	PKD2 (ENSCLAG00000003929)	ENSCLAG00000003868	USO1 (ENSCLAG00000003502)	G3BP2 (ENSCLAG00000003285) ##22	CDKL2 (ENSCLAG00000002974)	ODAPH (ENSCLAG00000002892)	THAP6 (ENSCLAG00000002864)	RCHY1 (ENSCLAG00000006290)	ENSCLAG00000006211	PARM1 (ENSCLAG00000005786)	BTC (ENSCLAG00000005737)	AREG (ENSCLAG00000005654)	EREG (ENSCLAG00000005605)	EPGN (ENSCLAG00000005565)	MTHFD2L (ENSCLAG00000005218)	ENSCLAG00000005126	PPBP (ENSCLAG00000005093)	CXCL5 (ENSCLAG00000005051)	CXCL8 (ENSCLAG00000004594)
Degu	MODERN SPECIES	317	ENSODEG00000001803	PSMB11 (ENSODEG00000018719)	ENSODEG00000001783	PSMB5 (ENSODEG00000001779)	C14orf93 (ENSODEG00000001756)	ENSODEG00000001742	HAUS4 (ENSODEG00000001722)	PRMT5 (ENSODEG00000001672)	REM2 (ENSODEG00000001644)	LRP10 (ENSODEG00000001621)	MMP14 (ENSODEG00000001611)	MRPL52 (ENSODEG00000001600)	SLC7A7 (ENSODEG00000001562)	OXA1L (ENSODEG00000001527)	ENSODEG00000018736	ENSODEG00000001719 ##22	ABHD4 (ENSODEG00000001709)	ENSODEG00000001700	ENSODEG00000001687
Naked mole-rat female	MODERN SPECIES	27	ENSHGLG00000008840	HSD17B11 (ENSHGLG00000009549)	NUDT9 (ENSHGLG00000010306)	ENSHGLG00000010648	SPARCL1 (ENSHGLG00000011108) ##20	ENSHGLG00000041536	DMP1 (ENSHGLG00000047355)	IBSP (ENSHGLG00000011597)	MEPE (ENSHGLG00000049259)	SPP1 (ENSHGLG00000012567)	ENSHGLG00000012710	ENSHGLG00000009525	ENSHGLG00000010362	ENSHGLG00000014204	USO1 (ENSHGLG00000014182)	G3BP2 (ENSHGLG00000043631) ##22	CDKL2 (ENSHGLG00000013277)	ENSHGLG00000013662	THAP6 (ENSHGLG00000043261)	ENSHGLG00000017025	PARM1 (ENSHGLG00000017045)	BTC (ENSHGLG00000010995)	AREG (ENSHGLG00000011242)	EREG (ENSHGLG00000011440)	ENSHGLG00000036014	MTHFD2L (ENSHGLG00000011885)	ENSHGLG00000047550	ENSHGLG00000045767	ENSHGLG00000042687	ENSHGLG00000012479	ENSHGLG00000042867
Rodentia_B	ANCESTRAL SPECIES	19	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000012635.a.a	ENSGT00390000010355	ENSGT00390000012635.a.b	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000163368	ENSGT00940000162559	ENSGT00940000162749	ENSGT00940000159886
Kangaroo rat	MODERN SPECIES	368	Shroom3 (ENSDORG00000012959)	Ccdc158 (ENSDORG00000009456)	Stbd1 (ENSDORG00000009454)	ENSDORG00000007800	Scarb2 (ENSDORG00000005294)	ENSDORG00000001341	ENSDORG00000001340	ENSDORG00000001468	Cxcl9 (ENSDORG00000014095)	ENSDORG00000029350	Sdad1 (ENSDORG00000014094)	Naaa (ENSDORG00000012689)	Ppef2 (ENSDORG00000015197)	ENSDORG00000025604	Uso1 (ENSDORG00000013378)	G3bp2 (ENSDORG00000028927) ##22	Cdkl2 (ENSDORG00000023925)	Odaph (ENSDORG00000023820)	ENSDORG00000003942	Rchy1 (ENSDORG00000003938)	Parm1 (ENSDORG00000029110)	Btc (ENSDORG00000016194)	Areg (ENSDORG00000004028)	Ereg (ENSDORG00000008591)	Epgn (ENSDORG00000013908)	Mthfd2l (ENSDORG00000013905)	ENSDORG00000015813	Rassf6 (ENSDORG00000014674)	ENSDORG00000002818	Afp (ENSDORG00000002815)	Alb (ENSDORG00000002808)
Myomorpha	ANCESTRAL SPECIES	19	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00390000012635.a.b	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000163368	ENSGT00940000162559	ENSGT00940000162749	ENSGT00940000159886
Muroidea	ANCESTRAL SPECIES	17	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00390000012635.a.b	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000163368	ENSGT00940000162559	ENSGT00940000162749	ENSGT00940000159886
Muroidea_A	ANCESTRAL SPECIES	13	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00390000012635.a.b	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00860000135999	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233.t	ENSGT00940000163368	ENSGT00940000162559	ENSGT00940000162749	ENSGT00940000159886
Cricetidae	ANCESTRAL SPECIES	14	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00860000135999	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233.t.b	ENSGT00940000155233.s	ENSGT00940000155233.t.a	ENSGT00940000163368	ENSGT00940000162559
Cricetinae	ANCESTRAL SPECIES	9	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00860000135999	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233.t.b	ENSGT00940000155233.s	ENSGT00940000155233.t.a	ENSGT00940000163368	ENSGT00940000162559
Chinese hamster chok1gshd	MODERN SPECIES	76	Shroom3 (ENSCGRG00001013324)	Ccdc158 (ENSCGRG00001020351)	Stbd1 (ENSCGRG00001011602)	Fam47e (ENSCGRG00001000514)	Scarb2 (ENSCGRG00001014787)	Nup54 (ENSCGRG00001019949)	ENSCGRG00001013544	ENSCGRG00001005770	Cxcl10 (ENSCGRG00001000274)	Cxcl9 (ENSCGRG00001023622)	Sdad1 (ENSCGRG00001018455)	Naaa (ENSCGRG00001020930)	ENSCGRG00001017894	ENSCGRG00001004701	Uso1 (ENSCGRG00001013385)	G3bp2 (ENSCGRG00001017447) ##22	Cdkl2 (ENSCGRG00001017011)	Odaph (ENSCGRG00001013555)	ENSCGRG00001005994	Rchy1 (ENSCGRG00001024243)	Parm1 (ENSCGRG00001020563)	Btc (ENSCGRG00001005178)	Areg (ENSCGRG00001000398)	Ereg (ENSCGRG00001024516)	Epgn (ENSCGRG00001018322)	Mthfd2l (ENSCGRG00001011906)	ENSCGRG00001022537	Cxcl1 (ENSCGRG00001017483)	ENSCGRG00001007144	Cxcl3 (ENSCGRG00001014739)	Pf4 (ENSCGRG00001008415)
Golden Hamster	MODERN SPECIES	629	Shroom3 (ENSMAUG00000014696)	Ccdc158 (ENSMAUG00000017239)	ENSMAUG00000007451	Fam47e (ENSMAUG00000015043)	Scarb2 (ENSMAUG00000015475)	Nup54 (ENSMAUG00000010976)	Art3 (ENSMAUG00000008069)	ENSMAUG00000020524	Cxcl10 (ENSMAUG00000014213)	Sdad1 (ENSMAUG00000017651)	Naaa (ENSMAUG00000016869)	ENSMAUG00000009955	ENSMAUG00000019862	Uso1 (ENSMAUG00000013506)	ENSMAUG00000013985	G3bp2 (ENSMAUG00000008136) ##22	Cdkl2 (ENSMAUG00000010607)	Odaph (ENSMAUG00000007984)	Rchy1 (ENSMAUG00000019726)	ENSMAUG00000019852	Parm1 (ENSMAUG00000020432)	Btc (ENSMAUG00000000236)	Areg (ENSMAUG00000012712)	Ereg (ENSMAUG00000013943)	ENSMAUG00000020133	ENSMAUG00000016910	Ppbp (ENSMAUG00000018544)	Cxcl5 (ENSMAUG00000019762)	Rassf6 (ENSMAUG00000019397)	Albfm1 (ENSMAUG00000009528)	Afm (ENSMAUG00000007715)
Cricetidae_B	ANCESTRAL SPECIES	9	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00860000135999	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000174344	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233.t.b	ENSGT00940000155233.s	ENSGT00940000155233.t.a	ENSGT00940000163368	ENSGT00940000162559
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	1	Shroom3 (ENSPEMG00000031032)	Ccdc158 (ENSPEMG00000008230)	ENSPEMG00000009525	Fam47e (ENSPEMG00000018186)	Scarb2 (ENSPEMG00000010085)	Nup54 (ENSPEMG00000016196)	Art3 (ENSPEMG00000015240)	ENSPEMG00000004556	Cxcl10 (ENSPEMG00000026215)	Cxcl9 (ENSPEMG00000029163)	Sdad1 (ENSPEMG00000017309)	Naaa (ENSPEMG00000009024)	Ppef2 (ENSPEMG00000023996)	ENSPEMG00000016496	Uso1 (ENSPEMG00000008403)	ENSPEMG00000017864 ##22	Cdkl2 (ENSPEMG00000002228)	Odaph (ENSPEMG00000017071)	ENSPEMG00000027392	Rchy1 (ENSPEMG00000015805)	ENSPEMG00000026014	Parm1 (ENSPEMG00000028336)	Btc (ENSPEMG00000012602)	Areg (ENSPEMG00000011814)	Ereg (ENSPEMG00000014346)	Epgn (ENSPEMG00000016879)	Mthfd2l (ENSPEMG00000019161)	ENSPEMG00000012404	Cxcl1 (ENSPEMG00000014263)	ENSPEMG00000009393	Pf4 (ENSPEMG00000030043)
Northern American deer mouse	MODERN SPECIES	1	Stim2 (ENSPEMG00000013752)	ENSPEMG00000008427	Pcdh7 (ENSPEMG00000012079)	ENSPEMG00000025746	ENSPEMG00000026158	ENSPEMG00000029628	ENSPEMG00000014650	ENSPEMG00000029590	Arap2 (ENSPEMG00000017210)	Dthd1 (ENSPEMG00000018338)	Nwd2 (ENSPEMG00000018695)	0610040J01Rik (ENSPEMG00000018765)	Rell1 (ENSPEMG00000019052)	Pgm2 (ENSPEMG00000000146)	Tbc1d1 (ENSPEMG00000001751)	ENSPEMG00000027929 ##22	Klf3 (ENSPEMG00000026686)	Tlr1 (ENSPEMG00000005760)	Fam114a1 (ENSPEMG00000007358) ##26	Tmem156 (ENSPEMG00000008551)	Klhl5 (ENSPEMG00000010526)	Wdr19 (ENSPEMG00000012819)	ENSPEMG00000025712	Klb (ENSPEMG00000017430)	ENSPEMG00000017878	Lias (ENSPEMG00000000012)	Ugdh (ENSPEMG00000000939)	Smim14 (ENSPEMG00000024594)	ENSPEMG00000024481	Ube2k (ENSPEMG00000006216)	Pds5a (ENSPEMG00000008929)
Prairie vole	MODERN SPECIES	349	Shroom3 (ENSMOCG00000007993)	Ccdc158 (ENSMOCG00000017131)	Stbd1 (ENSMOCG00000022025)	Fam47e (ENSMOCG00000011533)	Scarb2 (ENSMOCG00000015507)	Nup54 (ENSMOCG00000019302)	Art3 (ENSMOCG00000010647)	ENSMOCG00000005650	Cxcl10 (ENSMOCG00000018928)	Cxcl9 (ENSMOCG00000013363)	Sdad1 (ENSMOCG00000021440)	ENSMOCG00000018368	Naaa (ENSMOCG00000014268)	Ppef2 (ENSMOCG00000012693)	Uso1 (ENSMOCG00000019083)	G3bp2 (ENSMOCG00000020007) ##22	Cdkl2 (ENSMOCG00000001525)	Odaph (ENSMOCG00000014502)	Rchy1 (ENSMOCG00000020497)	Parm1 (ENSMOCG00000000888)	Btc (ENSMOCG00000012148)	Areg (ENSMOCG00000000240)	Ereg (ENSMOCG00000018280)	Epgn (ENSMOCG00000016241)	Mthfd2l (ENSMOCG00000006390)	ENSMOCG00000015510	ENSMOCG00000016463	Pf4 (ENSMOCG00000015033)	Ppbp (ENSMOCG00000013324)	Cxcl5 (ENSMOCG00000008408)	Rassf6 (ENSMOCG00000014864)
Murinae	ANCESTRAL SPECIES	12	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00390000012635.a.b	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00860000135999	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00940000165184	ENSGT00940000174344	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233.t.c	ENSGT00940000155233.s	ENSGT00940000155233.t.d
Mus	ANCESTRAL SPECIES	14	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00860000135999	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000174344	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233.t.c	ENSGT00940000155233.s	ENSGT00940000168732	ENSGT00940000155233.t.d	ENSGT00940000163368
Mus_A	ANCESTRAL SPECIES	6	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00860000135999	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000174344	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233.t.c	ENSGT00940000155233.s	ENSGT00940000168732	ENSGT00940000155233.t.d	ENSGT00940000163368
Mus_B	ANCESTRAL SPECIES	4	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00860000135999	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000174344	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233.t.c	ENSGT00940000155233.s	ENSGT00940000168732	ENSGT00940000155233.t.d	ENSGT00940000163368
Mus_C	ANCESTRAL SPECIES	4	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00860000135999	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000174344	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233.t.c	ENSGT00940000155233.s	ENSGT00940000168732	ENSGT00940000155233.t.d	ENSGT00940000163368
spretus	MODERN SPECIES	14	Shroom3 (MGP_SPRETEiJ_G0028419)	Ccdc158 (MGP_SPRETEiJ_G0028418)	Stbd1 (MGP_SPRETEiJ_G0028417)	Fam47e (MGP_SPRETEiJ_G0028416)	Scarb2 (MGP_SPRETEiJ_G0028415)	Nup54 (MGP_SPRETEiJ_G0028414)	MGP_SPRETEiJ_G0009415	Cxcl10 (MGP_SPRETEiJ_G0028413)	Art3 (MGP_SPRETEiJ_G0028412)	Cxcl9 (MGP_SPRETEiJ_G0028411)	Sdad1 (MGP_SPRETEiJ_G0028410)	MGP_SPRETEiJ_G0028409	Ppef2 (MGP_SPRETEiJ_G0028408)	MGP_SPRETEiJ_G0028407	Uso1 (MGP_SPRETEiJ_G0028406)	G3bp2 (MGP_SPRETEiJ_G0028405) ##22	Cdkl2 (MGP_SPRETEiJ_G0028404)	Odaph (MGP_SPRETEiJ_G0028403)	Rchy1 (MGP_SPRETEiJ_G0028402)	Parm1 (MGP_SPRETEiJ_G0028401)	Btc (MGP_SPRETEiJ_G0028400)	Areg (MGP_SPRETEiJ_G0028399)	Ereg (MGP_SPRETEiJ_G0028398)	Epgn (MGP_SPRETEiJ_G0028397)	Mthfd2l (MGP_SPRETEiJ_G0028396)	Cxcl2 (MGP_SPRETEiJ_G0028395)	Cxcl1 (MGP_SPRETEiJ_G0028394)	Cxcl15 (MGP_SPRETEiJ_G0028393)	Cxcl3 (MGP_SPRETEiJ_G0028392)	Pf4 (MGP_SPRETEiJ_G0028391)	Ppbp (MGP_SPRETEiJ_G0028390)
Steppe mouse	MODERN SPECIES	3339	Shroom3 (ENSMSIG00000019975)	ENSMSIG00000019954	Stbd1 (ENSMSIG00000019885)	ENSMSIG00000019880	Fam47e (ENSMSIG00000019753)	Scarb2 (ENSMSIG00000019725)	Nup54 (ENSMSIG00000019704)	Cxcl10 (ENSMSIG00000019679)	ENSMSIG00000019590	Cxcl9 (ENSMSIG00000019565)	Sdad1 (ENSMSIG00000019448)	Naaa (ENSMSIG00000019423)	Ppef2 (ENSMSIG00000019374)	ENSMSIG00000019344	Uso1 (ENSMSIG00000019049)	G3bp2 (ENSMSIG00000018888) ##22	Cdkl2 (ENSMSIG00000018828)	Odaph (ENSMSIG00000018812)	ENSMSIG00000018661	Rchy1 (ENSMSIG00000018588)	ENSMSIG00000018579	ENSMSIG00000018571	Parm1 (ENSMSIG00000018537)	Btc (ENSMSIG00000018521)	ENSMSIG00000018511	Areg (ENSMSIG00000018486)	Ereg (ENSMSIG00000018453)	Epgn (ENSMSIG00000018433)	Mthfd2l (ENSMSIG00000018395)	Cxcl2 (ENSMSIG00000018380)	Cxcl1 (ENSMSIG00000018365)
Mouse	MODERN SPECIES	14	Sowahb (ENSMUSG00000045314)	Shroom3 (ENSMUSG00000029381)	Ccdc158 (ENSMUSG00000050050)	Stbd1 (ENSMUSG00000047963)	Fam47e (ENSMUSG00000057068)	Scarb2 (ENSMUSG00000029426)	Nup54 (ENSMUSG00000034826)	Cxcl11 (ENSMUSG00000060183)	Cxcl10 (ENSMUSG00000034855)	Art3 (ENSMUSG00000034842)	Cxcl9 (ENSMUSG00000029417)	Sdad1 (ENSMUSG00000029415)	Naaa (ENSMUSG00000029413)	Ppef2 (ENSMUSG00000029410)	Uso1 (ENSMUSG00000029407)	G3bp2 (ENSMUSG00000029405) ##22	Cdkl2 (ENSMUSG00000029403)	Odaph (ENSMUSG00000096035)	Rchy1 (ENSMUSG00000029397)	Parm1 (ENSMUSG00000034981)	Btc (ENSMUSG00000082361)	Areg (ENSMUSG00000029378)	Ereg (ENSMUSG00000029377)	Epgn (ENSMUSG00000035020)	Mthfd2l (ENSMUSG00000029376)	Cxcl2 (ENSMUSG00000058427)	Cxcl1 (ENSMUSG00000029380)	Cxcl15 (ENSMUSG00000029375)	Cxcl3 (ENSMUSG00000029379)	Pf4 (ENSMUSG00000029373)	Ppbp (ENSMUSG00000029372)
Ryukyu mouse	MODERN SPECIES	14	Shroom3 (MGP_CAROLIEiJ_G0027422)	MGP_CAROLIEiJ_G0027421	Stbd1 (MGP_CAROLIEiJ_G0027420)	Fam47e (MGP_CAROLIEiJ_G0027419)	Scarb2 (MGP_CAROLIEiJ_G0027418)	Nup54 (MGP_CAROLIEiJ_G0027417)	MGP_CAROLIEiJ_G0008955	Cxcl10 (MGP_CAROLIEiJ_G0027416)	Art3 (MGP_CAROLIEiJ_G0027415)	Cxcl9 (MGP_CAROLIEiJ_G0027414)	Sdad1 (MGP_CAROLIEiJ_G0027413)	Naaa (MGP_CAROLIEiJ_G0027412)	Ppef2 (MGP_CAROLIEiJ_G0027411)	MGP_CAROLIEiJ_G0027410	Uso1 (MGP_CAROLIEiJ_G0027409)	G3bp2 (MGP_CAROLIEiJ_G0027408) ##22	Cdkl2 (MGP_CAROLIEiJ_G0027407)	Odaph (MGP_CAROLIEiJ_G0027406)	Rchy1 (MGP_CAROLIEiJ_G0027405)	Parm1 (MGP_CAROLIEiJ_G0027404)	Btc (MGP_CAROLIEiJ_G0027403)	Areg (MGP_CAROLIEiJ_G0027402)	Ereg (MGP_CAROLIEiJ_G0027401)	Epgn (MGP_CAROLIEiJ_G0027400)	Mthfd2l (MGP_CAROLIEiJ_G0027399)	Cxcl2 (MGP_CAROLIEiJ_G0027398)	Cxcl1 (MGP_CAROLIEiJ_G0027397)	MGP_CAROLIEiJ_G0027396	Cxcl3 (MGP_CAROLIEiJ_G0027395)	Pf4 (MGP_CAROLIEiJ_G0027394)	Ppbp (MGP_CAROLIEiJ_G0027393)
Shrew mouse	MODERN SPECIES	4	Shroom3 (MGP_PahariEiJ_G0017200)	Ccdc158 (MGP_PahariEiJ_G0017199)	Stbd1 (MGP_PahariEiJ_G0017198)	Fam47e (MGP_PahariEiJ_G0017197)	Scarb2 (MGP_PahariEiJ_G0017196)	Nup54 (MGP_PahariEiJ_G0017195)	MGP_PahariEiJ_G0008414	Cxcl10 (MGP_PahariEiJ_G0017194)	Art3 (MGP_PahariEiJ_G0017193)	Cxcl9 (MGP_PahariEiJ_G0017192)	Sdad1 (MGP_PahariEiJ_G0017191)	Naaa (MGP_PahariEiJ_G0017190)	Ppef2 (MGP_PahariEiJ_G0017189)	MGP_PahariEiJ_G0017188	Uso1 (MGP_PahariEiJ_G0017187)	G3bp2 (MGP_PahariEiJ_G0017186) ##22	Cdkl2 (MGP_PahariEiJ_G0017185)	Odaph (MGP_PahariEiJ_G0017184)	Rchy1 (MGP_PahariEiJ_G0017183)	Parm1 (MGP_PahariEiJ_G0017182)	Btc (MGP_PahariEiJ_G0017181)	Areg (MGP_PahariEiJ_G0017180)	Ereg (MGP_PahariEiJ_G0017179)	Epgn (MGP_PahariEiJ_G0017178)	Mthfd2l (MGP_PahariEiJ_G0017177)	Cxcl2 (MGP_PahariEiJ_G0017176)	Cxcl1 (MGP_PahariEiJ_G0017175)	MGP_PahariEiJ_G0017174	Cxcl3 (MGP_PahariEiJ_G0017173)	Pf4 (MGP_PahariEiJ_G0017172)	Ppbp (MGP_PahariEiJ_G0017171)
Rat	MODERN SPECIES	5	Ccdc158 (ENSRNOG00000002204)	Stbd1 (ENSRNOG00000002218)	Fam47e (ENSRNOG00000062922)	Scarb2 (ENSRNOG00000002225)	Nup54 (ENSRNOG00000002247)	Art3 (ENSRNOG00000002256)	ENSRNOG00000063380	Cxcl11 (ENSRNOG00000022298)	Cxcl10 (ENSRNOG00000022256)	Cxcl9 (ENSRNOG00000022242)	Sdad1 (ENSRNOG00000022229)	ENSRNOG00000068878	Naaa (ENSRNOG00000002273)	Ppef2 (ENSRNOG00000052061)	Uso1 (ENSRNOG00000002301)	G3bp2 (ENSRNOG00000002433) ##22	Cdkl2 (ENSRNOG00000002506)	Odaph (ENSRNOG00000059582)	Thap6 (ENSRNOG00000058724)	Rchy1 (ENSRNOG00000002546)	Parm1 (ENSRNOG00000002579)	Btc (ENSRNOG00000002728)	Areg (ENSRNOG00000002754)	Ereg (ENSRNOG00000002771)	Epgn (ENSRNOG00000002782)	Mthfd2l (ENSRNOG00000021347)	Cxcl2 (ENSRNOG00000002792)	Cxcl1 (ENSRNOG00000002802)	Cxcl3 (ENSRNOG00000028043)	Pf4 (ENSRNOG00000028015)	Ppbp (ENSRNOG00000002829)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1236	Shroom3 (ENSNGAG00000019784)	Ccdc158 (ENSNGAG00000015531)	Stbd1 (ENSNGAG00000013916)	Fam47e (ENSNGAG00000011068)	Scarb2 (ENSNGAG00000007280)	Nup54 (ENSNGAG00000019037)	Art3 (ENSNGAG00000014187)	ENSNGAG00000011811	Cxcl10 (ENSNGAG00000011040)	Cxcl9 (ENSNGAG00000010739)	Sdad1 (ENSNGAG00000000677)	Naaa (ENSNGAG00000018252)	ENSNGAG00000016389	ENSNGAG00000018646	Uso1 (ENSNGAG00000016527)	G3bp2 (ENSNGAG00000014406) ##22	Cdkl2 (ENSNGAG00000000801)	Odaph (ENSNGAG00000000020)	Rchy1 (ENSNGAG00000020117)	Parm1 (ENSNGAG00000019421)	ENSNGAG00000019149	Btc (ENSNGAG00000003336)	Areg (ENSNGAG00000001895)	Ereg (ENSNGAG00000000312)	Epgn (ENSNGAG00000000045)	ENSNGAG00000019728	ENSNGAG00000019178	Pf4 (ENSNGAG00000018826)	Ppbp (ENSNGAG00000000233)	Cxcl5 (ENSNGAG00000020248)	Rassf6 (ENSNGAG00000019907)
Lesser Egyptian jerboa	MODERN SPECIES	114	Stbd1 (ENSJJAG00000009773)	ENSJJAG00000019682	Scarb2 (ENSJJAG00000000432)	Nup54 (ENSJJAG00000023991)	ENSJJAG00000007005	ENSJJAG00000022045	Cxcl10 (ENSJJAG00000020115)	Cxcl9 (ENSJJAG00000011373)	ENSJJAG00000010100	ENSJJAG00000021661	ENSJJAG00000003861	Naaa (ENSJJAG00000017490)	Ppef2 (ENSJJAG00000023538)	ENSJJAG00000021143	Uso1 (ENSJJAG00000017158)	G3bp2 (ENSJJAG00000016557) ##22	Cdkl2 (ENSJJAG00000021303)	Odaph (ENSJJAG00000013778)	Rchy1 (ENSJJAG00000017374)	Parm1 (ENSJJAG00000020965)	ENSJJAG00000010085	Ces5a (ENSJJAG00000017809)	Ces1h (ENSJJAG00000023786)	ENSJJAG00000013336	ENSJJAG00000010509	Ces1a (ENSJJAG00000012358)	Slc6a2 (ENSJJAG00000022105)	Lpcat2 (ENSJJAG00000001079)	Mmp2 (ENSJJAG00000010703)	Irx6 (ENSJJAG00000003082)	Irx5 (ENSJJAG00000016102)
Atlantogenata	ANCESTRAL SPECIES	25	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00390000012635.a.b	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000163368	ENSGT00940000162559	ENSGT00940000162749	ENSGT00940000160757
Afrotheria	ANCESTRAL SPECIES	35	ENSGT00940000160196	ENSGT00950000183003.a.a.a.a.a	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000163368	ENSGT00940000162559	ENSGT00940000162749	ENSGT00940000160757
Tenrec	MODERN SPECIES	3513																G3BP2 (ENSETEG00000016219) ##22	CDKL2 (ENSETEG00000016217)
Afrotheria_a	ANCESTRAL SPECIES	35	ENSGT00940000160196	ENSGT00950000183003.a.a.a.a.a	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00940000157870	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000005348	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000163368	ENSGT00940000162559	ENSGT00940000162749	ENSGT00940000160757
Elephant	MODERN SPECIES	302	SEPTIN11 (ENSLAFG00000016488)	ENSLAFG00000003940	SHROOM3 (ENSLAFG00000022184)	CCDC158 (ENSLAFG00000006683)	STBD1 (ENSLAFG00000006680)	FAM47E (ENSLAFG00000008798)	SCARB2 (ENSLAFG00000008871)	NUP54 (ENSLAFG00000016515)	ART3 (ENSLAFG00000016508)	CXCL11 (ENSLAFG00000032739)	CXCL10 (ENSLAFG00000007923)	CXCL9 (ENSLAFG00000029889)	ENSLAFG00000012217	PPEF2 (ENSLAFG00000012215)	USO1 (ENSLAFG00000001784)	G3BP2 (ENSLAFG00000023321) ##22	CDKL2 (ENSLAFG00000014625)	THAP6 (ENSLAFG00000017346)	RCHY1 (ENSLAFG00000017342)	PARM1 (ENSLAFG00000003842)	BTC (ENSLAFG00000016413)	ENSLAFG00000028260	AREG (ENSLAFG00000013913)	EREG (ENSLAFG00000010348)	ENSLAFG00000029227	EPGN (ENSLAFG00000007856)	MTHFD2L (ENSLAFG00000007854)	ENSLAFG00000021795	ENSLAFG00000011089	PPBP (ENSLAFG00000032662)	ENSLAFG00000018004
Hyrax	MODERN SPECIES	2887																G3BP2 (ENSPCAG00000015109) ##22	CDKL2 (ENSPCAG00000015065)
Xenarthra	ANCESTRAL SPECIES	125	ENSGT00950000183003.a.a.a.a.a	ENSGT00940000157778	ENSGT00390000013339	ENSGT00390000007731	ENSGT00940000162425	ENSGT00940000153372.A.e.a.a	ENSGT00390000013620	ENSGT01030000234601.c.b.a	ENSGT00530000064263	ENSGT00940000161759	ENSGT00940000161751	ENSGT00390000010355	ENSGT00390000012635.a.b	ENSGT00530000063548.A	ENSGT00940000157870	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00940000162692	ENSGT00390000008853
Sloth	MODERN SPECIES	3213																G3BP2 (ENSCHOG00000005346) ##22
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	3264	ENSDNOG00000037373	ENSDNOG00000032752	ENSDNOG00000033466	ENSDNOG00000040273	TRAV41 (ENSDNOG00000049608)	ENSDNOG00000048574	ENSDNOG00000030719	TRDC (ENSDNOG00000046057)	ENSDNOG00000030724	TRAJ18 (ENSDNOG00000044553)	ENSDNOG00000032905	DAD1 (ENSDNOG00000033306)	ABHD4 (ENSDNOG00000011575)	OR6J1 (ENSDNOG00000015928)	ENSDNOG00000046715	ENSDNOG00000040673 ##22	ENSDNOG00000043711	ENSDNOG00000036263	OXA1L (ENSDNOG00000001130)	SLC7A7 (ENSDNOG00000001129)	MRPL52 (ENSDNOG00000032713)	MMP14 (ENSDNOG00000008414)	LRP10 (ENSDNOG00000045291)	REM2 (ENSDNOG00000024210)	RBM23 (ENSDNOG00000032457)	PRMT5 (ENSDNOG00000002572)	AJUBA (ENSDNOG00000045223)	C14orf93 (ENSDNOG00000048501)	PSMB5 (ENSDNOG00000045865)	PSMB11 (ENSDNOG00000048021)	CDH24 (ENSDNOG00000030883)
Armadillo	MODERN SPECIES	2966	STBD1 (ENSDNOG00000017677)	FAM47E (ENSDNOG00000032529)	SCARB2 (ENSDNOG00000015857)	NUP54 (ENSDNOG00000002132)	ART3 (ENSDNOG00000049435)	CXCL11 (ENSDNOG00000048035)	CXCL10 (ENSDNOG00000035824)	CXCL9 (ENSDNOG00000044316)	ENSDNOG00000043830	SDAD1 (ENSDNOG00000006304)	ENSDNOG00000039376	NAAA (ENSDNOG00000012944)	PPEF2 (ENSDNOG00000023606)	ENSDNOG00000010053	ENSDNOG00000046068	ENSDNOG00000045619 ##22	ENSDNOG00000034968	ENSDNOG00000047453	CDKL2 (ENSDNOG00000041749)	THAP6 (ENSDNOG00000039501)
Platypus	MODERN SPECIES	1	ENSOANG00000040678	CCDC158 (ENSOANG00000003480)	ENSOANG00000049586	ENSOANG00000011811	SCARB2 (ENSOANG00000008995)	NUP54 (ENSOANG00000006927)	ENSOANG00000031616	ENSOANG00000038499	ENSOANG00000050721	ENSOANG00000006926	ENSOANG00000047693	SDAD1 (ENSOANG00000006925)	NAAA (ENSOANG00000046308)	PPEF2 (ENSOANG00000036407)	USO1 (ENSOANG00000006923)	G3BP2 (ENSOANG00000004714) ##22	THAP6 (ENSOANG00000050194)	RCHY1 (ENSOANG00000006920)	ENSOANG00000013770	ENSOANG00000043173	ENSOANG00000006918	EREG (ENSOANG00000006917)	ENSOANG00000006915	ENSOANG00000040374	ENSOANG00000006913	ENSOANG00000041150	ENSOANG00000006910	RASSF6 (ENSOANG00000006909)	ENSOANG00000006907	ALB (ENSOANG00000009084)	ANKRD17 (ENSOANG00000022419)
Sauria	ANCESTRAL SPECIES	6														ENSGT00390000017018.b	ENSGT00940000174851	ENSGT00390000011365.b ##22	ENSGT00900000143472	ENSGT00940000160368	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000162559.c	ENSGT00940000160757	ENSGT00940000159886	ENSGT00390000000113.A.d
Lepidosauria	ANCESTRAL SPECIES	89	ENSGT00940000155803	ENSGT00940000153212	ENSGT00940000161344	ENSGT00710000108331	ENSGT00940000161848	ENSGT00940000162879	ENSGT00390000014879.c.b	ENSGT00390000000436	ENSGT00390000004945	ENSGT00390000001491.a	ENSGT00390000010950	ENSGT01050000244968.c	ENSGT00940000157357	ENSGT00390000017018.b	ENSGT00940000174851	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233	ENSGT00940000162559.c	ENSGT00940000160757	ENSGT00940000159886	ENSGT00940000153768.a	ENSGT00530000063506.A
Episquamata	ANCESTRAL SPECIES	5	ENSGT00940000163237.b	ENSGT00940000155803	ENSGT00940000153212	ENSGT00940000161344	ENSGT00710000108331	ENSGT00940000161848	ENSGT00940000162879	ENSGT00390000014879.c.b	ENSGT00390000000436	ENSGT00390000004945	ENSGT00390000001491.a	ENSGT00390000010950	ENSGT01050000244968.c	ENSGT00940000157357	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000156114	ENSGT00940000155135	ENSGT00940000158503	ENSGT00940000165574	ENSGT00940000158121	ENSGT00390000004352	ENSGT00530000063506.A	ENSGT00940000153768.a	ENSGT00940000160757	ENSGT00940000155233	ENSGT00940000160901	ENSGT00510000048556
Toxicofera	ANCESTRAL SPECIES	4	ENSGT00390000016737	ENSGT00940000158826	ENSGT00940000163094	ENSGT00940000163237.b	ENSGT00940000155803	ENSGT00940000153212	ENSGT00940000161848	ENSGT00390000014879.c.b	ENSGT00390000000436	ENSGT00390000004945	ENSGT00390000001491.a	ENSGT00390000010950	ENSGT01050000244968.c	ENSGT00940000157357	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000156114	ENSGT00940000155135	ENSGT00940000158503	ENSGT00940000158121	ENSGT00390000004352	ENSGT00530000063506.A	ENSGT00940000153768.a	ENSGT00940000160757	ENSGT00940000160901	ENSGT00510000048748	ENSGT00940000160696	ENSGT00940000168371
Elapidae	ANCESTRAL SPECIES	5	ENSGT00940000156266	ENSGT00940000158826	ENSGT00940000163094	ENSGT00940000163237.b	ENSGT00940000155803.g	ENSGT00940000153212	ENSGT00940000161848	ENSGT00390000014879.c.b	ENSGT00390000000436	ENSGT00390000004945	ENSGT00390000001491.a	ENSGT00390000010950	ENSGT01050000244968.c	ENSGT00940000157357	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000156114	ENSGT00940000158121	ENSGT00390000004352	ENSGT00530000063506.A	ENSGT00940000153768.a	ENSGT00940000160757	ENSGT00940000160901	ENSGT00510000048748	ENSGT00940000153203.A.b	ENSGT00390000006413	ENSGT00950000182832.C	ENSGT00940000159532
Indian cobra	MODERN SPECIES	337	ENSNNAG00000009374	ENSNNAG00000009429	ENSNNAG00000009468	ENSNNAG00000009659	SULT1B1 (ENSNNAG00000010946)	SLC20A2 (ENSNNAG00000011417)	SMIM19 (ENSNNAG00000011512)	ENSNNAG00000011572	ENSNNAG00000011941	POMK (ENSNNAG00000012320)	HGSNAT (ENSNNAG00000012339)	INTS10 (ENSNNAG00000012430)	CSGALNACT1 (ENSNNAG00000012528)	SH2D4A (ENSNNAG00000012575)	ENSNNAG00000012683	G3BP2 (ENSNNAG00000014439) ##22	CDKL2 (ENSNNAG00000014469)	ENSNNAG00000014683	SMYD1 (ENSNNAG00000014698)	ENSNNAG00000014729	EIF2AK3 (ENSNNAG00000003246)	RPIA (ENSNNAG00000003316)	COX18 (ENSNNAG00000003338)	ANKRD17 (ENSNNAG00000003373)	CXCL8 (ENSNNAG00000003548)	ENSNNAG00000003583	MTHFD2L (ENSNNAG00000003808)	EREG (ENSNNAG00000003888)	RMND5A (ENSNNAG00000003913)	RNF103 (ENSNNAG00000003956)	CHMP3 (ENSNNAG00000003977)
Elapidae_a	ANCESTRAL SPECIES	78										ENSGT00390000004945	ENSGT00390000001491.a	ENSGT00390000010950	ENSGT01050000244968.c	ENSGT00940000157357	ENSGT00390000017018.b.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000156114	ENSGT00940000158121	ENSGT00390000004352	ENSGT00530000063506.A	ENSGT00940000153768.a	ENSGT00940000160757	ENSGT00940000160901.a	ENSGT00510000048748	ENSGT00940000153203.A.b	ENSGT00390000006413	ENSGT00950000182832.C	ENSGT00940000159532
Acanthophiinae	ANCESTRAL SPECIES	77										ENSGT00390000004945	ENSGT00390000001491.a	ENSGT00390000010950	ENSGT01050000244968.c	ENSGT00940000157357	ENSGT00390000017018.b.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000156114	ENSGT00940000158121	ENSGT00390000004352	ENSGT00530000063506.A	ENSGT00940000153768.a	ENSGT00940000160757	ENSGT00940000160901.a	ENSGT00510000048748	ENSGT00940000153203.A.b	ENSGT00390000006413	ENSGT00950000182832.C	ENSGT00940000159532
Mainland tiger snake	MODERN SPECIES	121											INTS10 (ENSNSUG00000017991)	CSGALNACT1 (ENSNSUG00000017990)	ENSNSUG00000017989	SH2D4A (ENSNSUG00000017983)	USO1 (ENSNSUG00000017955)	G3BP2 (ENSNSUG00000017952) ##22	CDKL2 (ENSNSUG00000017951)	ENSNSUG00000017950	BTC (ENSNSUG00000017949)	SMYD1 (ENSNSUG00000017948)	ENSNSUG00000017947	EIF2AK3 (ENSNSUG00000017946)	RPIA (ENSNSUG00000017945)	COX18 (ENSNSUG00000017944)	ANKRD17 (ENSNSUG00000017563)	CXCL8 (ENSNSUG00000017557)	ENSNSUG00000017556	ENSNSUG00000017555	EREG (ENSNSUG00000017554)	ENSNSUG00000017553	ENSNSUG00000017552
Eastern brown snake	MODERN SPECIES	93											POMK (ENSPTXG00000014698)	HGSNAT (ENSPTXG00000014700)	INTS10 (ENSPTXG00000014703)	CSGALNACT1 (ENSPTXG00000014704)	USO1 (ENSPTXG00000014705)	G3BP2 (ENSPTXG00000014707) ##22	CDKL2 (ENSPTXG00000014708)	PARM1 (ENSPTXG00000014709)	BTC (ENSPTXG00000014710)	SMYD1 (ENSPTXG00000014711)	ENSPTXG00000014712	EIF2AK3 (ENSPTXG00000014717)	RPIA (ENSPTXG00000015234)	ENSPTXG00000015240	COX18 (ENSPTXG00000015242)	ANKRD17 (ENSPTXG00000015264)	CXCL8 (ENSPTXG00000017098)	MTHFD2L (ENSPTXG00000017122)	ENSPTXG00000017125	RMND5A (ENSPTXG00000017126)	RNF103 (ENSPTXG00000017129)
Blue-lipped sea krait	MODERN SPECIES	6365																G3BP2 (ENSLLTG00000003250) ##22
Lizard	MODERN SPECIES	5	ENSACAG00000027821	ENSACAG00000034925	ENSACAG00000009697	ENSACAG00000029696	ENSACAG00000029637	ENSACAG00000009304	ENSACAG00000009238	ENSACAG00000009226	ENSACAG00000009218	ENSACAG00000009173	INTS10 (ENSACAG00000009079)	ENSACAG00000009025	SH2D4A (ENSACAG00000009003)	ENSACAG00000037053	USO1 (ENSACAG00000008914)	G3BP2 (ENSACAG00000008695) ##22	ENSACAG00000044764	CDKL2 (ENSACAG00000008598)	ENSACAG00000042600	PARM1 (ENSACAG00000029131)	ENSACAG00000037990	SMYD1 (ENSACAG00000008484)	FABP1 (ENSACAG00000008459)	THNSL2 (ENSACAG00000008423)	ENSACAG00000008418	EIF2AK3 (ENSACAG00000002119)	RPIA (ENSACAG00000036198)	ENSACAG00000002353	ENSACAG00000038215	ENSACAG00000029588	ENSACAG00000011105
Laterata	ANCESTRAL SPECIES	11	ENSGT00940000163237.b	ENSGT00940000155803	ENSGT00940000153212	ENSGT00940000161344	ENSGT00710000108331	ENSGT00940000161848	ENSGT00940000162879	ENSGT00390000014879.c.b	ENSGT00390000000436	ENSGT00390000004945	ENSGT00390000001491.a	ENSGT00390000010950	ENSGT01050000244968.c	ENSGT00940000157357	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000156114	ENSGT00940000155135	ENSGT00940000158503	ENSGT00940000165574	ENSGT00940000158121	ENSGT00390000004352	ENSGT00530000063506.A	ENSGT00940000153768.a	ENSGT00940000160757.ac.b	ENSGT00940000160757.ac.a	ENSGT00940000155233	ENSGT00940000160901
Common wall lizard	MODERN SPECIES	4	SULT1B1 (ENSPMRG00000018133)	ENSPMRG00000018230	SLC20A2 (ENSPMRG00000018238)	ENSPMRG00000018250	ENSPMRG00000018251	ENSPMRG00000018258	POMK (ENSPMRG00000018263)	ENSPMRG00000018277	ENSPMRG00000018286	ENSPMRG00000018294	HGSNAT (ENSPMRG00000018307)	INTS10 (ENSPMRG00000018330)	CSGALNACT1 (ENSPMRG00000018359)	SH2D4A (ENSPMRG00000018367)	USO1 (ENSPMRG00000018382)	G3BP2 (ENSPMRG00000018413) ##22	CDKL2 (ENSPMRG00000018427)	PARM1 (ENSPMRG00000018436)	ENSPMRG00000018444	BTC (ENSPMRG00000018451)	SMYD1 (ENSPMRG00000018479)	FABP1 (ENSPMRG00000018510)	ENSPMRG00000018517	ENSPMRG00000018523	EIF2AK3 (ENSPMRG00000018532)	RPIA (ENSPMRG00000018542)	ENSPMRG00000018545	ENSPMRG00000018551	ENSPMRG00000018562	ENSPMRG00000018631	ENSPMRG00000018708
Argentine black and white tegu	MODERN SPECIES	70	ENSSMRG00000016866	ENSSMRG00000016868	ENSSMRG00000016876	YTHDC1 (ENSSMRG00000016879)	ENSSMRG00000016881	ENSSMRG00000016884	SULT1B1 (ENSSMRG00000016885)	SLC20A2 (ENSSMRG00000016887)	SMIM19 (ENSSMRG00000016889)	POMK (ENSSMRG00000016890)	HGSNAT (ENSSMRG00000016891)	INTS10 (ENSSMRG00000016893)	CSGALNACT1 (ENSSMRG00000016895)	SH2D4A (ENSSMRG00000016896)	USO1 (ENSSMRG00000016899)	G3BP2 (ENSSMRG00000016903) ##22	CDKL2 (ENSSMRG00000016905)	PARM1 (ENSSMRG00000016907)	BTC (ENSSMRG00000016909)	SMYD1 (ENSSMRG00000016910)	FABP1 (ENSSMRG00000016911)	THNSL2 (ENSSMRG00000016913)	ENSSMRG00000016918	EIF2AK3 (ENSSMRG00000016920)	RPIA (ENSSMRG00000016921)	COX18 (ENSSMRG00000016923)	ANKRD17 (ENSSMRG00000016935)	ENSSMRG00000017708	ENSSMRG00000017709	ENSSMRG00000017710	MTHFD2L (ENSSMRG00000017712)
tuatara	MODERN SPECIES	26	YTHDC1 (ENSSPUG00000009357)	ENSSPUG00000009310	ENSSPUG00000009280	ENSSPUG00000009253	SLC20A2 (ENSSPUG00000009237)	SMIM19 (ENSSPUG00000009230)	POMK (ENSSPUG00000009223)	ENSSPUG00000009215	ENSSPUG00000009196	INTS10 (ENSSPUG00000009173)	CSGALNACT1 (ENSSPUG00000009114)	SH2D4A (ENSSPUG00000009099)	USO1 (ENSSPUG00000009031)	ENSSPUG00000009013	ENSSPUG00000009005	G3BP2 (ENSSPUG00000008986) ##22	CDKL2 (ENSSPUG00000008960)	THAP6 (ENSSPUG00000008955)	RCHY1 (ENSSPUG00000008945)	PARM1 (ENSSPUG00000008935)	BTC (ENSSPUG00000008847)	EREG (ENSSPUG00000008813)	EPGN (ENSSPUG00000008798)	MTHFD2L (ENSSPUG00000008719)	ENSSPUG00000008687	ENSSPUG00000008676	ENSSPUG00000008629	ENSSPUG00000008594	ENSSPUG00000008538	RASSF6 (ENSSPUG00000008520)	ANKRD17 (ENSSPUG00000008468)
Archelosauria	ANCESTRAL SPECIES	4														ENSGT00390000017018.b	ENSGT00940000174851	ENSGT00390000011365.b ##22	ENSGT00900000143472	ENSGT00940000160368	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000162559.d	ENSGT00940000162559.c	ENSGT00940000160757	ENSGT00940000159886	ENSGT00390000000113.A.d
Cryptodira	ANCESTRAL SPECIES	2	ENSGT00940000156986	ENSGT00550000074618.a.b	ENSGT00390000006260	ENSGT00950000183162.b	ENSGT00940000159168	ENSGT00410000029064	ENSGT00390000011749	ENSGT00940000159617	ENSGT00390000017890	ENSGT01030000234564.a.a.b.b	ENSGT00940000157066	ENSGT00390000006975.a	ENSGT00940000162544	ENSGT00940000164512	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00900000143472	ENSGT00940000160368	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000162559.d	ENSGT00940000162559.c	ENSGT00940000164504	ENSGT00940000160757	ENSGT00940000159886
Testudinoidea	ANCESTRAL SPECIES	34													ENSGT00390000006975.a	ENSGT00940000162544	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00900000143472	ENSGT00940000160368	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000162559.d	ENSGT00940000159886	ENSGT00390000000113.A.d	ENSGT00390000000113.A.c	ENSGT00940000153768.a
Emydidae	ANCESTRAL SPECIES	27	ENSGT00940000157357	ENSGT00940000156986	ENSGT00550000074618.a.b	ENSGT00390000006260	ENSGT00950000183162.b	ENSGT00940000159168	ENSGT00410000029064	ENSGT00390000011749	ENSGT00940000159617	ENSGT00390000017890	ENSGT01030000234564.a.a.b.b	ENSGT00940000157066	ENSGT00390000006975.a	ENSGT00940000162544	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00900000143472	ENSGT00940000160368	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000162559.d	ENSGT00940000160757.qb	ENSGT00940000159886	ENSGT00390000000113.A.d	ENSGT00390000000113.A.c
Three-toed box turtle	MODERN SPECIES	63	CSGALNACT1 (ENSTMTG00000007858)	SH2D4A (ENSTMTG00000007842)	GSR (ENSTMTG00000007827)	PPP2CB (ENSTMTG00000007804)	TEX15 (ENSTMTG00000007794)	PURG (ENSTMTG00000007785)	WRN (ENSTMTG00000006953)	SMIM18 (ENSTMTG00000006879)	GTF2E2 (ENSTMTG00000006855)	RBPMS (ENSTMTG00000006835)	DCTN6 (ENSTMTG00000006754)	PRAG1 (ENSTMTG00000006738)	ENSTMTG00000006732	ENSTMTG00000006701	USO1 (ENSTMTG00000006654)	G3BP2 (ENSTMTG00000006616) ##22	CDKL2 (ENSTMTG00000006580)	THAP6 (ENSTMTG00000006566)	RCHY1 (ENSTMTG00000006548)	BTC (ENSTMTG00000006526)	AREG (ENSTMTG00000006509)	EREG (ENSTMTG00000006501)	EPGN (ENSTMTG00000006486)	MTHFD2L (ENSTMTG00000006460)	ENSTMTG00000006447	RASSF6 (ENSTMTG00000006422)	ENSTMTG00000006374	ALB (ENSTMTG00000006310)	ANKRD17 (ENSTMTG00000006114)	COX18 (ENSTMTG00000005959)	ADAMTS3 (ENSTMTG00000005887)
painted turtle	MODERN SPECIES	857	SH2D4A (ENSCPBG00000013395)	GSR (ENSCPBG00000013398)	PPP2CB (ENSCPBG00000013403)	TEX15 (ENSCPBG00000013412)	PURG (ENSCPBG00000013416)	WRN (ENSCPBG00000013421)	GTF2E2 (ENSCPBG00000013431)	SMIM18 (ENSCPBG00000013433)	RBPMS (ENSCPBG00000013437)	DCTN6 (ENSCPBG00000013440)	MBOAT4 (ENSCPBG00000013442)	PRAG1 (ENSCPBG00000013445)	CLDN23 (ENSCPBG00000013447)	ENSCPBG00000013448	USO1 (ENSCPBG00000013457)	G3BP2 (ENSCPBG00000013475) ##22	ENSCPBG00000013478	CDKL2 (ENSCPBG00000013482)	THAP6 (ENSCPBG00000013486)	RCHY1 (ENSCPBG00000013489)	PARM1 (ENSCPBG00000013492)	BTC (ENSCPBG00000013493)	AREG (ENSCPBG00000013495)	EREG (ENSCPBG00000013497)	EPGN (ENSCPBG00000013502)	MTHFD2L (ENSCPBG00000013503)	ENSCPBG00000013507	ALB (ENSCPBG00000013516)
Testudinidae	ANCESTRAL SPECIES	39													ENSGT00390000006975.a	ENSGT00940000162544	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000162559.d	ENSGT00940000162559.c.b	ENSGT00940000164504	ENSGT00940000160757	ENSGT00940000159886	ENSGT00390000000113.A.d
Goode s thornscrub tortoise	MODERN SPECIES	19	CSGALNACT1 (ENSGEVG00005010328)	SH2D4A (ENSGEVG00005010298)	GSR (ENSGEVG00005010270)	PPP2CB (ENSGEVG00005010228)	TEX15 (ENSGEVG00005010118)	PURG (ENSGEVG00005010058)	WRN (ENSGEVG00005009898)	SMIM18 (ENSGEVG00005009857)	GTF2E2 (ENSGEVG00005009833)	RBPMS (ENSGEVG00005009681)	DCTN6 (ENSGEVG00005009621)	MBOAT4 (ENSGEVG00005009578)	PRAG1 (ENSGEVG00005009545)	ENSGEVG00005009521	USO1 (ENSGEVG00005009287)	G3BP2 (ENSGEVG00005009179) ##22	CDKL2 (ENSGEVG00005009125)	ENSGEVG00005009086	RCHY1 (ENSGEVG00005007032)	PARM1 (ENSGEVG00005007007)	ENSGEVG00005006993	ENSGEVG00005006975	BTC (ENSGEVG00005006948)	EREG (ENSGEVG00005006889)	EPGN (ENSGEVG00005006793)	MTHFD2L (ENSGEVG00005006754)	ENSGEVG00005006729	ENSGEVG00005006598	ENSGEVG00005006389	ENSGEVG00005006322	CXCL1 (ENSGEVG00005006174)
Abingdon island giant tortoise	MODERN SPECIES	2369															USO1 (ENSCABG00000003275)	G3BP2 (ENSCABG00000003273) ##22	CDKL2 (ENSCABG00000003268)	THAP6 (ENSCABG00000003265)	RCHY1 (ENSCABG00000003263)	PARM1 (ENSCABG00000003260)	BTC (ENSCABG00000003257)	AREG (ENSCABG00000003256)	EREG (ENSCABG00000003254)	EPGN (ENSCABG00000003249)	MTHFD2L (ENSCABG00000003234)	ENSCABG00000003228	ENSCABG00000003175
Chinese turtle	MODERN SPECIES	1225	GSR (ENSPSIG00000012867)	PPP2CB (ENSPSIG00000013167)	PURG (ENSPSIG00000000534)	WRN (ENSPSIG00000013411)	GTF2E2 (ENSPSIG00000006031)	RBPMS (ENSPSIG00000006136)	DCTN6 (ENSPSIG00000006432)	MBOAT4 (ENSPSIG00000006574)	PRAG1 (ENSPSIG00000006601)	CLDN23 (ENSPSIG00000000539)	ENSPSIG00000006610	ENSPSIG00000007444	ENSPSIG00000007523	ENSPSIG00000007530	ENSPSIG00000007890	G3BP2 (ENSPSIG00000007933) ##22	CDKL2 (ENSPSIG00000008110)	THAP6 (ENSPSIG00000008533)	RCHY1 (ENSPSIG00000008537)	PARM1 (ENSPSIG00000008544)	BTC (ENSPSIG00000008547)	AREG (ENSPSIG00000008602)	EREG (ENSPSIG00000008683)	EPGN (ENSPSIG00000008702)	MTHFD2L (ENSPSIG00000008863)	ENSPSIG00000008892	ENSPSIG00000008903	ENSPSIG00000009109	RASSF6 (ENSPSIG00000009126)	ENSPSIG00000009299	ALB (ENSPSIG00000010012)
Archosauria	ANCESTRAL SPECIES	43	ENSGT00940000156085	ENSGT00530000063506.A	ENSGT00940000153768.a	ENSGT00390000000113.A.c	ENSGT00390000000113.A.d	ENSGT00940000159886	ENSGT00940000160757	ENSGT00940000162559.c	ENSGT00940000162559.d	ENSGT00940000160901	ENSGT00510000048556	ENSGT00510000048748	ENSGT00940000160696	ENSGT00390000017018.b	ENSGT00940000174851	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00940000162692	ENSGT00390000008853	ENSGT00390000014545	ENSGT00940000160508
Australian saltwater crocodile	MODERN SPECIES	32	ADAMTS3 (ENSCPRG00005006972)	COX18 (ENSCPRG00005006995)	ANKRD17 (ENSCPRG00005007014)	ENSCPRG00005007075	ENSCPRG00005007125	ENSCPRG00005007143	ENSCPRG00005007171	RASSF6 (ENSCPRG00005007267)	ENSCPRG00005007275	ENSCPRG00005007280	ENSCPRG00005007284	MTHFD2L (ENSCPRG00005007287)	EREG (ENSCPRG00005007293)	AREG (ENSCPRG00005007297)	USO1 (ENSCPRG00005007325)	G3BP2 (ENSCPRG00005007491) ##22	CDKL2 (ENSCPRG00005007511)	THAP6 (ENSCPRG00005007520)	RCHY1 (ENSCPRG00005007527)	ANXA3 (ENSCPRG00005007548)	BMP2K (ENSCPRG00005007561)	PAQR3 (ENSCPRG00005007579)	ANTXR2 (ENSCPRG00005007592)	PRDM8 (ENSCPRG00005007601)	FGF5 (ENSCPRG00005007605)	ENSCPRG00005007606	CFAP299 (ENSCPRG00005007610)	BMP3 (ENSCPRG00005007618)	PRKG2 (ENSCPRG00005007623)	RASGEF1B (ENSCPRG00005007628)
Aves	ANCESTRAL SPECIES	39	ENSGT00530000063506.A	ENSGT00940000153768.a	ENSGT00390000000113.A.c	ENSGT00390000000113.A.d	ENSGT00940000159886	ENSGT00940000160757.vb.b	ENSGT00940000160757.vb.a	ENSGT00940000162559.c	ENSGT00940000160757.wb	ENSGT00940000160901	ENSGT00510000048556	ENSGT00510000048748	ENSGT00940000160696	ENSGT00390000017018.b	ENSGT00940000174851	ENSGT00390000011365.b ##22	ENSGT00900000143472
African ostrich	MODERN SPECIES	930		ADAMTS3 (ENSSCUG00000017305)	COX18 (ENSSCUG00000017308)	ANKRD17 (ENSSCUG00000017310)	ALB (ENSSCUG00000017314)	ENSSCUG00000017316	RASSF6 (ENSSCUG00000017318)	ENSSCUG00000017320	ENSSCUG00000017321	ENSSCUG00000017323	MTHFD2L (ENSSCUG00000017324)	EPGN (ENSSCUG00000017325)	EREG (ENSSCUG00000017326)	AREG (ENSSCUG00000017329)	USO1 (ENSSCUG00000017331)	G3BP2 (ENSSCUG00000017333) ##22
Neognathae	ANCESTRAL SPECIES	37	ENSGT00530000063506.A	ENSGT00940000153768.a	ENSGT00390000000113.A.c	ENSGT00390000000113.A.d	ENSGT00940000159886	ENSGT00940000160757.vb.b	ENSGT00940000160757.vb.a	ENSGT00940000162559.c	ENSGT00940000160757.wb	ENSGT00940000160901	ENSGT00510000048556	ENSGT00510000048748	ENSGT00940000160696	ENSGT00390000017018.b	ENSGT00940000174851	ENSGT00390000011365.b ##22	ENSGT00940000157548	ENSGT00940000155291	ENSGT00940000156320	ENSGT00890000139463.b.b.b	ENSGT00940000158449	ENSGT00390000016547	ENSGT00940000159775
Neognathae_b	ANCESTRAL SPECIES	4	ENSGT00940000153768.a	ENSGT00390000000113.A.c	ENSGT00390000000113.A.d	ENSGT00940000159886	ENSGT00940000160757.vb.b	ENSGT00940000160757.vb.a.b	ENSGT00940000160757.vb.a.a	ENSGT00940000162559.c	ENSGT00940000160757.wb	ENSGT00940000162559.d	ENSGT00940000160901	ENSGT00510000048556	ENSGT00510000048748	ENSGT00940000160696	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000157548	ENSGT00940000155291	ENSGT00940000156320	ENSGT00890000139463.b.b.b	ENSGT00940000158449	ENSGT00390000016547	ENSGT00940000159775
Passeriformes	ANCESTRAL SPECIES	4	ENSGT00940000158449	ENSGT00890000139463.b.b.b	ENSGT00940000156320	ENSGT00940000155291	ENSGT00940000157548	ENSGT00940000159886	ENSGT00940000160757.vb.b	ENSGT00940000160757.vb.a.b	ENSGT00940000160757.vb.a.a	ENSGT00940000162559.c	ENSGT00940000160901	ENSGT00510000048556	ENSGT00510000048748	ENSGT00940000160696	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00900000143472	ENSGT00390000000113.A.c	ENSGT00940000153768.a	ENSGT00530000063506.A	ENSGT00940000156085	ENSGT00940000156290	ENSGT00940000157321	ENSGT01050000244898.b.b	ENSGT00940000158529	ENSGT00940000156035	ENSGT00500000044947	ENSGT00390000012791	ENSGT00390000010355	ENSGT00940000182167	ENSGT00530000063548.A
Great tit	MODERN SPECIES	23	FGF5 (ENSPMJG00000000296)	PRDM8 (ENSPMJG00000000300)	ANTXR2 (ENSPMJG00000000314)	PAQR3 (ENSPMJG00000000394)	BMP2K (ENSPMJG00000000407)	RASSF6 (ENSPMJG00000000450)	ENSPMJG00000000482	ENSPMJG00000000494	ENSPMJG00000000501	MTHFD2L (ENSPMJG00000000523)	ALB (ENSPMJG00000000532)	EPGN (ENSPMJG00000000597)	EREG (ENSPMJG00000000604)	AREG (ENSPMJG00000000608)	USO1 (ENSPMJG00000000620)	G3BP2 (ENSPMJG00000000714) ##22	ANKRD17 (ENSPMJG00000000728)	COX18 (ENSPMJG00000000872)	ADAMTS3 (ENSPMJG00000000895)	SLC4A4 (ENSPMJG00000000919)	DCK (ENSPMJG00000001020)	MOB1B (ENSPMJG00000001045)	GRSF1 (ENSPMJG00000001058)	RUFY3 (ENSPMJG00000001065)	UTP3 (ENSPMJG00000001092)	JCHAIN (ENSPMJG00000001096)	SDAD1 (ENSPMJG00000001149)	ENSPMJG00000001156	NAAA (ENSPMJG00000001157)	ENSPMJG00000001164	ENSPMJG00000001167
Passeriformes_d	ANCESTRAL SPECIES	4	ENSGT00940000158449	ENSGT00890000139463.b.b.b	ENSGT00940000156320	ENSGT00940000155291	ENSGT00940000157548	ENSGT00940000159886	ENSGT00940000160757.vb.b	ENSGT00940000160757.vb.a.b	ENSGT00940000160757.vb.a.a	ENSGT00940000162559.c	ENSGT00940000160901	ENSGT00510000048556	ENSGT00510000048748	ENSGT00940000160696	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00900000143472	ENSGT00390000000113.A.c	ENSGT00940000153768.a	ENSGT00530000063506.A	ENSGT00940000156085	ENSGT00940000156290	ENSGT00940000157321	ENSGT01050000244898.b.b	ENSGT00940000158529	ENSGT00940000156035	ENSGT00500000044947	ENSGT00390000012791	ENSGT00390000010355	ENSGT00940000182167	ENSGT00530000063548.A
Flycatcher	MODERN SPECIES	22							RASSF6 (ENSFALG00000008108)	ENSFALG00000008109	CXCL8 (ENSFALG00000023914)	ENSFALG00000026039	ENSFALG00000008120	MTHFD2L (ENSFALG00000008126)	EREG (ENSFALG00000008147)	AREG (ENSFALG00000008151)	ENSFALG00000008170	ENSFALG00000008198 ##22	ALB (ENSFALG00000008233)	ANKRD17 (ENSFALG00000008287)	COX18 (ENSFALG00000027235)	ADAMTS3 (ENSFALG00000008341)	SLC4A4 (ENSFALG00000008362)	DCK (ENSFALG00000027266)	MOB1B (ENSFALG00000025618)	GRSF1 (ENSFALG00000028915)	RUFY3 (ENSFALG00000008406)	UTP3 (ENSFALG00000014560)	JCHAIN (ENSFALG00000008413)	SDAD1 (ENSFALG00000008414)	ENSFALG00000024740	ENSFALG00000008420	PPEF2 (ENSFALG00000008433)
Passeriformes_g	ANCESTRAL SPECIES	31	ENSGT00940000158449	ENSGT00890000139463.b.b.b	ENSGT00940000156320	ENSGT00940000155291	ENSGT00940000157548	ENSGT00940000159886	ENSGT00940000160757.vb.b	ENSGT00940000160757.vb.a.b	ENSGT00940000160757.vb.a.a	ENSGT00940000162559.c	ENSGT00940000160901	ENSGT00510000048556	ENSGT00510000048748	ENSGT00940000160696	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00900000143472	ENSGT00390000000113.A.c	ENSGT00940000153768.a	ENSGT00530000063506.A	ENSGT00940000156085	ENSGT00940000156290	ENSGT00940000157321	ENSGT01050000244898.b.b	ENSGT00940000158529	ENSGT00940000156035	ENSGT00500000044947	ENSGT00390000012791	ENSGT00940000182167	ENSGT00390000010355	ENSGT00530000063548.A
Passeroidea	ANCESTRAL SPECIES	33	ENSGT00940000158449	ENSGT00890000139463.b.b.b	ENSGT00940000156320	ENSGT00940000155291	ENSGT00940000157548	ENSGT00940000159886	ENSGT00940000160757.vb.b	ENSGT00940000160757.vb.a.b	ENSGT00940000160757.vb.a.a	ENSGT00940000162559.c	ENSGT00940000160901	ENSGT00510000048556	ENSGT00510000048748	ENSGT00940000160696	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00390000000113.A.c	ENSGT00940000153768.a	ENSGT00530000063506.A	ENSGT00940000156085	ENSGT00940000156290	ENSGT00940000157321	ENSGT01050000244898.b.b	ENSGT00940000158529	ENSGT00940000156035	ENSGT00500000044947	ENSGT00390000012791	ENSGT00390000010355	ENSGT00940000182167	ENSGT00530000063548.A	ENSGT00940000157870
Zebra finch	MODERN SPECIES	25	BMP2K (ENSTGUG00000001513)	PAQR3 (ENSTGUG00000001520)	ANTXR2 (ENSTGUG00000001523)	PRDM8 (ENSTGUG00000021340)	FGF5 (ENSTGUG00000026235)	BMP3 (ENSTGUG00000001533)	RASSF6 (ENSTGUG00000011147)	ENSTGUG00000001542	ENSTGUG00000020501	ENSTGUG00000001543	ENSTGUG00000022241	MTHFD2L (ENSTGUG00000029267)	EREG (ENSTGUG00000028843)	AREG (ENSTGUG00000001551)	USO1 (ENSTGUG00000001555)	G3BP2 (ENSTGUG00000001561) ##22	ALB (ENSTGUG00000001572)	ANKRD17 (ENSTGUG00000001580)	COX18 (ENSTGUG00000019755)	ENSTGUG00000029308	ADAMTS3 (ENSTGUG00000001593)	SLC4A4 (ENSTGUG00000001611)	DCK (ENSTGUG00000001636)	MOB1B (ENSTGUG00000024613)	GRSF1 (ENSTGUG00000001644)	RUFY3 (ENSTGUG00000001653)	UTP3 (ENSTGUG00000001660)	JCHAIN (ENSTGUG00000001661)	ENSTGUG00000020614	SDAD1 (ENSTGUG00000001665)	NAAA (ENSTGUG00000001671)
Common canary	MODERN SPECIES	64	FGF5 (ENSSCAG00000004888)	ENSSCAG00000004878	ANTXR2 (ENSSCAG00000004867)	PAQR3 (ENSSCAG00000004862)	BMP2K (ENSSCAG00000004852)	RASSF6 (ENSSCAG00000004840)	ENSSCAG00000004833	ENSSCAG00000004820	ENSSCAG00000004816	ENSSCAG00000004812	MTHFD2L (ENSSCAG00000004808)	EPGN (ENSSCAG00000004802)	EREG (ENSSCAG00000004797)	AREG (ENSSCAG00000004794)	USO1 (ENSSCAG00000004770)	G3BP2 (ENSSCAG00000004754) ##22	ALB (ENSSCAG00000004747)	ANKRD17 (ENSSCAG00000004730)	COX18 (ENSSCAG00000004720)	ADAMTS3 (ENSSCAG00000004685)	MRPL1 (ENSSCAG00000004628)	CNOT6L (ENSSCAG00000004625)	ENSSCAG00000004623	ENSSCAG00000004621	ENSSCAG00000004620	CCNG2 (ENSSCAG00000004549)	CCNI (ENSSCAG00000004536)	SEPTIN11 (ENSSCAG00000004524)	ENSSCAG00000004517	SHROOM3 (ENSSCAG00000004512)	STBD1 (ENSSCAG00000004506)
Medium ground finch	MODERN SPECIES	238							ENSGFOG00000012173	ENSGFOG00000012181	ENSGFOG00000012188	ENSGFOG00000012193	MTHFD2L (ENSGFOG00000012242)	EPGN (ENSGFOG00000012667)	EREG (ENSGFOG00000012675)	AREG (ENSGFOG00000009477)	USO1 (ENSGFOG00000009512)	G3BP2 (ENSGFOG00000010667) ##22	ENSGFOG00000010672	ANK2 (ENSGFOG00000010689)	LARP7 (ENSGFOG00000010808)	ENSGFOG00000010836	ENSGFOG00000010823	ALPK1 (ENSGFOG00000010847)	ENSGFOG00000010882	AP1AR (ENSGFOG00000010889)	CDKL2 (ENSGFOG00000010901)	RCHY1 (ENSGFOG00000010913)	ENSGFOG00000010918	BTC (ENSGFOG00000010922)	ENSGFOG00000010928	DCTN6 (ENSGFOG00000010935)	RBPMS (ENSGFOG00000010940)
Neognathae_c	ANCESTRAL SPECIES	39	ENSGT00530000063506.A	ENSGT00940000153768.a	ENSGT00390000000113.A.c	ENSGT00390000000113.A.d	ENSGT00940000159886	ENSGT00940000160757.vb.b	ENSGT00940000160757.vb.a.b	ENSGT00940000160757.vb.a.a	ENSGT00940000162559.c	ENSGT00940000160757.wb	ENSGT00940000162559.d	ENSGT00940000160901	ENSGT00510000048748	ENSGT00940000160696	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000157548	ENSGT00940000155291	ENSGT00940000156320	ENSGT00890000139463.b.b.b	ENSGT00940000158449	ENSGT00390000016547	ENSGT00940000159775
Kakapo	MODERN SPECIES	20	ENSSHBG00005017418	ENSSHBG00005017417	ENSSHBG00005017416	ENSSHBG00005017415	ENSSHBG00005017414	RASSF6 (ENSSHBG00005017413)	ENSSHBG00005017412	ALB (ENSSHBG00005017404)	ANKRD17 (ENSSHBG00005014959)	COX18 (ENSSHBG00005014646)	ADAMTS3 (ENSSHBG00005014619)	MTHFD2L (ENSSHBG00005014593)	EREG (ENSSHBG00005014574)	AREG (ENSSHBG00005014567)	USO1 (ENSSHBG00005014449)	G3BP2 (ENSSHBG00005014416) ##22	BMP2K (ENSSHBG00005014386)	PAQR3 (ENSSHBG00005014356)	ANTXR2 (ENSSHBG00005014336)	PRDM8 (ENSSHBG00005014285)	FGF5 (ENSSHBG00005014259)	BMP3 (ENSSHBG00005014244)	SEC24D (ENSSHBG00005014200)	ENSSHBG00005014183	SYNPO2 (ENSSHBG00005014167)	MYOZ2 (ENSSHBG00005014150)	USP53 (ENSSHBG00005014131)	ENSSHBG00005014105	FABP2 (ENSSHBG00005014095)	PDE5A (ENSSHBG00005012439)	RPL7L1 (ENSSHBG00005012330)
Golden eagle	MODERN SPECIES		COX18 (ENSACCG00020000286)	ANKRD17 (ENSACCG00020000292)	ALB (ENSACCG00020000329)	ENSACCG00020000379	RASSF6 (ENSACCG00020000399)	ENSACCG00020000419	ENSACCG00020000435	ENSACCG00020000450	ENSACCG00020000497	ENSACCG00020000529	ENSACCG00020000562	MTHFD2L (ENSACCG00020000633)	EREG (ENSACCG00020000683)	AREG (ENSACCG00020000702)	USO1 (ENSACCG00020000825)	G3BP2 (ENSACCG00020000954) ##22	BMP2K (ENSACCG00020000979)	PAQR3 (ENSACCG00020001011)	ANTXR2 (ENSACCG00020001032)	ENSACCG00020001048	FGF5 (ENSACCG00020001086)	CFAP299 (ENSACCG00020001111)	BMP3 (ENSACCG00020001122)
Galloanserae	ANCESTRAL SPECIES	34	ENSGT00530000063506.A	ENSGT00940000153768.a.b	ENSGT00390000000113.A.c	ENSGT00390000000113.A.d	ENSGT00940000159886	ENSGT00940000160757.vb.b	ENSGT00940000160757.vb.a	ENSGT00940000162559.c	ENSGT00940000160757.wb	ENSGT00940000160901	ENSGT00510000048556	ENSGT00510000048748	ENSGT00940000160696	ENSGT00390000017018.b	ENSGT00940000174851	ENSGT00390000011365.b ##22	ENSGT00940000157548	ENSGT00940000155291	ENSGT00940000156320	ENSGT00890000139463.b.b.b	ENSGT00940000158449	ENSGT00390000016547	ENSGT00940000159775	ENSGT00940000155816.b	ENSGT00940000159393	ENSGT00940000162658.a.b.a	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375
Anatidae	ANCESTRAL SPECIES	2	ENSGT00530000063506.A	ENSGT00940000153768.a.b	ENSGT00390000000113.A.c	ENSGT00390000000113.A.d	ENSGT00940000159886	ENSGT00940000160757.vb.b	ENSGT00940000160757.vb.a	ENSGT00940000162559.c	ENSGT00940000160757.wb	ENSGT00940000160901	ENSGT00510000048556	ENSGT00510000048748	ENSGT00940000160696	ENSGT00390000017018.b	ENSGT00940000174851	ENSGT00390000011365.b ##22	ENSGT00940000157548	ENSGT00940000155291	ENSGT00940000156320	ENSGT00890000139463.b.b.b	ENSGT00940000158449	ENSGT00390000016547	ENSGT00940000159775	ENSGT00940000155816.b	ENSGT00940000159393	ENSGT00940000162658.a.b.a	ENSGT00940000159025	ENSGT00390000002509	ENSGT00940000173410	ENSGT00390000002485	ENSGT00730000111375
Pink-footed goose	MODERN SPECIES	133	NPFFR2 (ENSABRG00000007339)	ADAMTS3 (ENSABRG00000007319)	COX18 (ENSABRG00000007291)	ANKRD17 (ENSABRG00000007272)	ALB (ENSABRG00000007261)	ENSABRG00000007247	RASSF6 (ENSABRG00000007244)	ENSABRG00000007242	ENSABRG00000007219	ENSABRG00000007177	ENSABRG00000007168	MTHFD2L (ENSABRG00000007154)	EREG (ENSABRG00000007138)	AREG (ENSABRG00000007134)	USO1 (ENSABRG00000007110)	G3BP2 (ENSABRG00000007098) ##22	BMP2K (ENSABRG00000007090)	PAQR3 (ENSABRG00000007085)	ANTXR2 (ENSABRG00000007073)	PRDM8 (ENSABRG00000007068)	FGF5 (ENSABRG00000007009)	CFAP299 (ENSABRG00000006980)	BMP3 (ENSABRG00000006973)	RASGEF1B (ENSABRG00000006928)	PRKG2 (ENSABRG00000006902)	ABCG2 (ENSABRG00000006889)	PKD2 (ENSABRG00000006874)	SPP1 (ENSABRG00000006867)	ENSABRG00000006864	IBSP (ENSABRG00000006858)	ENSABRG00000006846
Duck	MODERN SPECIES	22	ANKRD17 (ENSAPLG00000010793)	ENSAPLG00000028470	ALB (ENSAPLG00000010999)	ENSAPLG00000011956	RASSF6 (ENSAPLG00000012335)	ENSAPLG00000023047	ENSAPLG00000012692	ENSAPLG00000018570	ENSAPLG00000021960	MTHFD2L (ENSAPLG00000012869)	EPGN (ENSAPLG00000012940)	EREG (ENSAPLG00000012982)	AREG (ENSAPLG00000017459)	USO1 (ENSAPLG00000013128)	ENSAPLG00000023742	G3BP2 (ENSAPLG00000013777) ##22	BMP2K (ENSAPLG00000014134)	PAQR3 (ENSAPLG00000018923)	ANTXR2 (ENSAPLG00000014640)	CFAP299 (ENSAPLG00000015021)	BMP3 (ENSAPLG00000015075)	RASGEF1B (ENSAPLG00000015111)	PRKG2 (ENSAPLG00000015473)	PKD2 (ENSAPLG00000002737)	ENSAPLG00000003038	ENSAPLG00000028651	SPARCL1 (ENSAPLG00000003209) ##20	ENSAPLG00000021509	ENSAPLG00000029063	ENSAPLG00000029297	KLHL8 (ENSAPLG00000003622)
Phasianidae	ANCESTRAL SPECIES	2	ENSGT00390000009873	ENSGT00940000154593.a.b	ENSGT00940000158368	ENSGT00390000006915.d	ENSGT00940000158602	ENSGT00910000144159.B	ENSGT00940000159851	ENSGT00390000009223	ENSGT00940000156167.b	ENSGT00940000160901	ENSGT00510000048556	ENSGT00510000048748	ENSGT00940000160696	ENSGT00390000017018.b	ENSGT00940000174851	ENSGT00390000011365.b ##22	ENSGT00940000157548	ENSGT00940000155291	ENSGT00940000156320	ENSGT00890000139463.b.b.b	ENSGT00940000158449	ENSGT00940000159775	ENSGT00940000155816.b	ENSGT00940000159393	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00940000173785	ENSGT00730000111375	ENSGT00510000046787.e.a ##20
Japanese quail	MODERN SPECIES	22	HPGD (ENSCJPG00005009938)	GLRA3 (ENSCJPG00005009946)	GPM6A (ENSCJPG00005009954)	WDR17 (ENSCJPG00005009956)	SPATA4 (ENSCJPG00005009959)	ASB5 (ENSCJPG00005009960)	ENSCJPG00005009961	SPCS3 (ENSCJPG00005009962)	VEGFC (ENSCJPG00005009963)	MTHFD2L (ENSCJPG00005009966)	EPGN (ENSCJPG00005009967)	EREG (ENSCJPG00005009968)	AREG (ENSCJPG00005009972)	USO1 (ENSCJPG00005009974)	ENSCJPG00005009976	G3BP2 (ENSCJPG00005009977) ##22	BMP2K (ENSCJPG00005009978)	PAQR3 (ENSCJPG00005009979)	ANTXR2 (ENSCJPG00005009983)	PRDM8 (ENSCJPG00005009988)	FGF5 (ENSCJPG00005009989)	BMP3 (ENSCJPG00005009992)	RASGEF1B (ENSCJPG00005009993)	PRKG2 (ENSCJPG00005009999)	PKD2 (ENSCJPG00005010000)	SPP1 (ENSCJPG00005010001)	ENSCJPG00005010004	IBSP (ENSCJPG00005010005)	ENSCJPG00005010006	SPARCL1 (ENSCJPG00005010007) ##20	NUDT9 (ENSCJPG00005010008)
Phasianidae_b	ANCESTRAL SPECIES	4	ENSGT00940000158356	ENSGT00390000009873	ENSGT00940000154593.a.b	ENSGT00940000158368	ENSGT00390000006915.d	ENSGT00940000158602	ENSGT00910000144159.B	ENSGT00940000159851	ENSGT00390000009223	ENSGT00940000156167.b	ENSGT00940000160901	ENSGT00510000048556	ENSGT00510000048748	ENSGT00940000160696	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000157548	ENSGT00940000155291	ENSGT00940000156320	ENSGT00890000139463.b.b.b	ENSGT00940000158449	ENSGT00940000159775	ENSGT00940000155816.b	ENSGT00940000159393	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00940000173410	ENSGT00390000002485	ENSGT00730000111375	ENSGT00510000046787.e.a ##20
Chicken	MODERN SPECIES	33	CEP44 (ENSGALG00010002787)	HPGD (ENSGALG00010002632)	GLRA3 (ENSGALG00010002656)	GPM6A (ENSGALG00010003347)	WDR17 (ENSGALG00010003384)	SPATA4 (ENSGALG00010003397)	ASB5 (ENSGALG00010003412)	SPCS3 (ENSGALG00010003442)	VEGFC (ENSGALG00010003259)	ENSGALG00010003278	MTHFD2L (ENSGALG00010003303)	EPGN (ENSGALG00010003315)	EREG (ENSGALG00010003322)	AREG (ENSGALG00010003223)	USO1 (ENSGALG00010002441)	G3BP2 (ENSGALG00010002459) ##22	BMP2K (ENSGALG00010003165)	PAQR3 (ENSGALG00010003171)	ANTXR2 (ENSGALG00010003189)	PRDM8 (ENSGALG00010002796)	FGF5 (ENSGALG00010002801)	BMP3 (ENSGALG00010002819)	RASGEF1B (ENSGALG00010002880)	PRKG2 (ENSGALG00010003198)	PKD2 (ENSGALG00010003204)	SPP1 (ENSGALG00010003220)	MEPE (ENSGALG00010002469)	IBSP (ENSGALG00010002428)	SPARCL1 (ENSGALG00010003771) ##20	NUDT9 (ENSGALG00010003788)	ENSGALG00010004976
Turkey	MODERN SPECIES	24	ENSMGAG00000007547	ENSMGAG00000022528	ENSMGAG00000019649	ENSMGAG00000007496	ENSMGAG00000007518	ENSMGAG00000007522	PKD2 (ENSMGAG00000007470)	ENSMGAG00000007424	ENSMGAG00000007408	ENSMGAG00000007405	ENSMGAG00000007399	ENSMGAG00000018376	ENSMGAG00000007307	ENSMGAG00000007258	ENSMGAG00000007285	ENSMGAG00000007221 ##22	AREG (ENSMGAG00000007140)	ENSMGAG00000007149	ENSMGAG00000007121	ENSMGAG00000007127	MTHFD2L (ENSMGAG00000007102)	ENSMGAG00000007088	ENSMGAG00000007085	ASB5 (ENSMGAG00000007064)	ENSMGAG00000007014	ENSMGAG00000019055	ENSMGAG00000020257	ENSMGAG00000006945	ENSMGAG00000006917	ENSMGAG00000006895	ENSMGAG00000006878
Actinopterygii	ANCESTRAL SPECIES	15													ENSGT00400000023138	ENSGT00980000202596	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00940000159025	ENSGT00940000156633	ENSGT00940000163989.a.b	ENSGT00940000165755	ENSGT00940000158189	ENSGT00950000183033.a.b.a	ENSGT01030000234528.A.a.a	ENSGT00570000079168.b.b.b	ENSGT00940000156589	ENSGT00940000160382	ENSGT00390000004396.h	ENSGT00940000157878	ENSGT00940000156171	ENSGT00390000017043
Reedfish	MODERN SPECIES	13	ENSECRG00000003248	ENSECRG00000003228	ENSECRG00000003209	ENSECRG00000003197	ENSECRG00000003180	ENSECRG00000003160	ENSECRG00000003150	ENSECRG00000003135	ENSECRG00000003109	ENSECRG00000003090	ENSECRG00000003083	ENSECRG00000003067	ENSECRG00000003053	ENSECRG00000003039 #20	uso1 (ENSECRG00000002967)	g3bp2a (ENSECRG00000002923) ##22	ENSECRG00000002906	CDKL2 (ENSECRG00000002818)	ppm1kb (ENSECRG00000002799)	pkd2 (ENSECRG00000002785)	ENSECRG00000002778	ENSECRG00000002755	ENSECRG00000002745	herc3 (ENSECRG00000002597)	FAM13A (ENSECRG00000002444)	ENSECRG00000002399	ENSECRG00000002370	ENSECRG00000002353	elmod2 (ENSECRG00000002342)	ucp1 (ENSECRG00000002322)	ENSECRG00000002222
Neopterygii	ANCESTRAL SPECIES	2	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772	ENSGT00390000009191	ENSGT00940000154466	ENSGT00940000158105	ENSGT00940000155038	ENSGT00390000000973.a.b	ENSGT00510000046908.a.b ##12	ENSGT00980000202608	ENSGT00510000046787.e.a ##20	ENSGT00400000023138	ENSGT00980000202596	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00940000159025	ENSGT00940000156633	ENSGT00940000163989.a.b	ENSGT00940000163989.a.a	ENSGT00940000165755	ENSGT00940000158189	ENSGT00950000183033.a.b.a	ENSGT01030000234528.A.a.a	ENSGT00570000079168.b.b.b	ENSGT00940000156589	ENSGT00940000160382	ENSGT00390000004396.h	ENSGT00940000157878	ENSGT00940000156171
Spotted gar	MODERN SPECIES	670	hmgb2a (ENSLOCG00000013578)	galnt7 (ENSLOCG00000013565)	galntl6 (ENSLOCG00000013556)	FAM193A (ENSLOCG00000013548)	ENSLOCG00000013545 ##12	ENSLOCG00000013541	ENSLOCG00000013538	ENSLOCG00000013532	sparcl1 (ENSLOCG00000013522) ##20	ENSLOCG00000013517	ENSLOCG00000013511	ENSLOCG00000013509	ENSLOCG00000013504	ENSLOCG00000013500 #20	uso1 (ENSLOCG00000013485)	g3bp2a (ENSLOCG00000013470) ##22	CDKL2 (ENSLOCG00000013464)	ENSLOCG00000013461	pkd2 (ENSLOCG00000013447)	abcg2a (ENSLOCG00000013438)	ppm1kb (ENSLOCG00000013435)	ENSLOCG00000013433	mtap (ENSLOCG00000013426)	RIGI (ENSLOCG00000013422)	toporsa (ENSLOCG00000017928)	ndufb6 (ENSLOCG00000013412)	TMEM215 (ENSLOCG00000017926)	ENSLOCG00000013396	ptgr1.1 (ENSLOCG00000013391)	txn (ENSLOCG00000013388)	SVEP1 (ENSLOCG00000013366)
Osteoglossocephalai	ANCESTRAL SPECIES	14	ENSGT00940000157887	ENSGT00950000182917.a.a.a.b	ENSGT00390000005708	ENSGT00940000154706.rb.b	ENSGT00940000167699	ENSGT00390000005844.a.b	ENSGT00440000034932	ENSGT00940000160529	ENSGT00940000165650	ENSGT01060000249224	ENSGT00390000004643	ENSGT00960000190222	ENSGT00950000182907.a.b.b.a	ENSGT00940000155598	ENSGT00390000017018.b	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00940000166038	ENSGT00940000156633.d.b	ENSGT00940000175002	ENSGT00940000159025	ENSGT00940000166376	ENSGT00940000156633.d.a	ENSGT00940000163989.a.b	ENSGT00940000163989.a.a	ENSGT00940000165755	ENSGT00940000158189	ENSGT00950000183033.a.b.a	ENSGT01030000234528.A.a.a	ENSGT00570000079168.b.b.b	ENSGT00940000156589
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	108	ENSGT00390000008798.c	ENSGT00940000157887.o	ENSGT00950000182917.a.a.a.b	ENSGT00390000005708	ENSGT00940000154706.rb.b	ENSGT00940000167699	ENSGT00390000005844.a.b	ENSGT00440000034932	ENSGT00940000160529	ENSGT00940000165650	ENSGT01060000249224	ENSGT00390000004643	ENSGT00950000182907.a.b.b.a.a	ENSGT00940000155598.c	ENSGT00390000017018.b	ENSGT00390000011365.b.k ##22	ENSGT00940000159025	ENSGT00940000166376	ENSGT00940000156633.d.a	ENSGT00940000163989.a.b	ENSGT00940000158189	ENSGT00950000183033.a.b.a	ENSGT01030000234528.A.a.a	ENSGT00570000079168.b.b.b.b	ENSGT00940000156589	ENSGT00940000160382.a	ENSGT00940000157878.a	ENSGT00940000156171.i	ENSGT00390000017043	ENSGT00940000178396	ENSGT00940000165852
P. kingsleyae	MODERN SPECIES	6	lef1 (ENSPKIG00000012891)	ENSPKIG00000012909	dnajb14 (ENSPKIG00000012948)	pla2g12a (ENSPKIG00000012993)	snapc3 (ENSPKIG00000013017)	PSIP1 (ENSPKIG00000013066)	bnc2 (ENSPKIG00000013129)	CNTLN (ENSPKIG00000013170)	ENSPKIG00000013272	ENSPKIG00000013381	ENSPKIG00000013474	trmo (ENSPKIG00000013505)	anp32b (ENSPKIG00000013545)	coro2aa (ENSPKIG00000013597)	uso1 (ENSPKIG00000013731)	g3bp2a (ENSPKIG00000013985) ##22	pkd2 (ENSPKIG00000014110)	abcg2d (ENSPKIG00000014165)	ppm1kb (ENSPKIG00000014234)	ENSPKIG00000014283	herc3 (ENSPKIG00000014378)	FAM13A (ENSPKIG00000014610)	zgc:154142 (ENSPKIG00000014899)	ENSPKIG00000014970	elmod2 (ENSPKIG00000015008)	ucp1 (ENSPKIG00000015063)	TBC1D9 (ENSPKIG00000015148)	RNF150 (ENSPKIG00000015276)	ENSPKIG00000015299	ENSPKIG00000015310	INPP4B (ENSPKIG00000015341)
Asian bonytongue	MODERN SPECIES	7	ENSSFOG00015024817	pla2g12a (ENSSFOG00015027653)	dnajb14 (ENSSFOG00015018429)	TTC39B (ENSSFOG00015018388)	snapc3 (ENSSFOG00015018372)	PSIP1 (ENSSFOG00015018274)	bnc2 (ENSSFOG00015025047)	CNTLN (ENSSFOG00015031410)	sh3gl2a (ENSSFOG00015018201)	ENSSFOG00015032409	ENSSFOG00015018153	trmo (ENSSFOG00015018124)	anp32b (ENSSFOG00015032871)	coro2aa (ENSSFOG00015018035)	uso1 (ENSSFOG00015017903)	g3bp2a (ENSSFOG00015017846) ##22	pkd2 (ENSSFOG00015017800)	abcg2d (ENSSFOG00015017738)	ppm1kb (ENSSFOG00015017711)	ENSSFOG00015017684	ENSSFOG00015017654	ENSSFOG00015017702	ENSSFOG00015005867	herc3 (ENSSFOG00015017569)	FAM13A (ENSSFOG00015017543)	zgc:154142 (ENSSFOG00015017433)	ENSSFOG00015033242	elmod2 (ENSSFOG00015017381)	ucp1 (ENSSFOG00015017355)	TBC1D9 (ENSSFOG00015017254)	RNF150 (ENSSFOG00015033115)
Osteoglossiformes	ANCESTRAL SPECIES	148	ENSGT00940000164073.b.a	ENSGT00940000157370.a	ENSGT00940000157714	ENSGT00940000159660.g	ENSGT00940000155140	ENSGT00930000151042	ENSGT00940000157887.p	ENSGT00950000182917.a.a.a.a	ENSGT01030000235336	ENSGT01060000248998	ENSGT00940000154737.d.e	ENSGT00950000182907.a.b.b.a.b	ENSGT00940000155598.d	ENSGT00940000155951.b	ENSGT00940000155951.a	ENSGT00390000011365.b.l ##22	ENSGT00940000160368	ENSGT00940000166038	ENSGT00940000156633.d.b
Asian bonytongue	MODERN SPECIES	18	cyp2u1 (ENSSFOG00015014549)	LEF1 (ENSSFOG00015014526)	ENSSFOG00015014418	CASP6 (ENSSFOG00015029815)	ENSSFOG00015014238	dnajb14 (ENSSFOG00015014183)	TTC39B (ENSSFOG00015014125)	PSIP1 (ENSSFOG00015014102)	ENSSFOG00015014057	bnc2 (ENSSFOG00015014026)	ENSSFOG00015013986	anp32b (ENSSFOG00015032852)	CORO2A (ENSSFOG00015013929)	tec (ENSSFOG00015013833)	ENSSFOG00015013782	G3BP2 (ENSSFOG00015013690) ##22	CDKL2 (ENSSFOG00015013655)	abcg2a (ENSSFOG00015013635)	PPM1K (ENSSFOG00015027104)	ENSSFOG00015013565	ENSSFOG00015013544	ENSSFOG00015025504	ucp1 (ENSSFOG00015013477)	ENSSFOG00015026393	TBC1D9 (ENSSFOG00015013420)	RNF150 (ENSSFOG00015013385)	INPP4B (ENSSFOG00015013349)	GAB1 (ENSSFOG00015013326)	SMARCA5 (ENSSFOG00015013252)	hhip (ENSSFOG00015013203)	anapc10 (ENSSFOG00015013182)
P. kingsleyae	MODERN SPECIES	234	ENSPKIG00000013733	casp6a (ENSPKIG00000013707)	ENSPKIG00000013679	dnajb14 (ENSPKIG00000013657)	TTC39B (ENSPKIG00000013623)	ENSPKIG00000013598	ENSPKIG00000013576	ENSPKIG00000013567	ENSPKIG00000013551	ENSPKIG00000013513	CORO2A (ENSPKIG00000013483)	ENSPKIG00000013456	ENSPKIG00000013442	ENSPKIG00000013423	ENSPKIG00000013396	G3BP2 (ENSPKIG00000013310) ##22	abcg2a (ENSPKIG00000013249)	PPM1K (ENSPKIG00000013197)	ENSPKIG00000013165	ENSPKIG00000013148	ENSPKIG00000013137	TBC1D9 (ENSPKIG00000012912)	RNF150 (ENSPKIG00000012850)	znf330 (ENSPKIG00000012819)	LEF1 (ENSPKIG00000012779)	cyp2u1 (ENSPKIG00000012757)	sgms2b (ENSPKIG00000012734)	ENSPKIG00000012720	GIMD1 (ENSPKIG00000012707)	aimp1b (ENSPKIG00000012696)	NPNT (ENSPKIG00000012674)
Clupeocephala	ANCESTRAL SPECIES	201	ENSGT00940000154108.b.a.b	ENSGT00930000150973.B.e.a	ENSGT00940000154950.y.b	ENSGT00940000164073.b	ENSGT00940000157370.a	ENSGT00940000158059.h	ENSGT00930000151042	ENSGT00950000182917.a.a.a.a	ENSGT00940000154706.rb.a	ENSGT01030000235123	ENSGT01030000235336	ENSGT01060000248998	ENSGT00940000177950	ENSGT00940000155951.b	ENSGT00940000155951.a	ENSGT00390000011365.b ##22	ENSGT00940000160368	ENSGT00940000166038	ENSGT00940000156633.d.b	ENSGT00940000175002	ENSGT00390000013285.h	ENSGT00940000153745.b.f	ENSGT00940000157103	ENSGT00940000157059	ENSGT00940000156074.a.a
Euteleosteomorpha	ANCESTRAL SPECIES	38	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00940000156416.c	ENSGT00950000183033.a.a.c.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000165755	ENSGT00940000163989.a.a	ENSGT00940000163989.a.b	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT00950000182907.a.b.b.a	ENSGT00960000190222	ENSGT00390000004643	ENSGT00400000022377	ENSGT00940000167108	ENSGT00940000165650	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00390000005708	ENSGT00940000169573	ENSGT00950000182917.a.a.a.b
Acanthomorphata	ANCESTRAL SPECIES	36	ENSGT00940000156801.h	ENSGT00940000157587.k	ENSGT00490000044733	ENSGT00390000017043	ENSGT00940000156171.g	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT00950000182907.a.b.b.a	ENSGT00960000190222	ENSGT00390000004643	ENSGT00940000167108	ENSGT00940000165650	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00390000005708	ENSGT00940000169573	ENSGT00950000182917.a.a.a.b	ENSGT00940000157887
Euacanthomorphacea	ANCESTRAL SPECIES	3	ENSGT00490000044733	ENSGT00390000017043	ENSGT00940000156171.g	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00940000153216.a.b	ENSGT00950000183033.a.a.c.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT00950000182907.a.b.b.a	ENSGT00960000190222	ENSGT00390000004643	ENSGT00940000167108	ENSGT00940000165650	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00970000198226	ENSGT00940000153942.a.e.a	ENSGT00390000005708	ENSGT00940000169573
Percomorphaceae	ANCESTRAL SPECIES	17	ENSGT00390000017043	ENSGT00940000156171.g	ENSGT00940000154950.y.a.d	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00940000153216.a.b	ENSGT00950000183033.a.a.c.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT00950000182907.a.b.b.a	ENSGT00960000190222	ENSGT00390000004643	ENSGT00940000167108	ENSGT00940000165650	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00390000005708	ENSGT00940000169573	ENSGT00950000182917.a.a.a.b	ENSGT00940000157887
Percomorphaceae_B	ANCESTRAL SPECIES		ENSGT00940000156171.g	ENSGT00940000154950.y.a.d	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00940000153216.a.b	ENSGT00950000183033.a.a.c.b	ENSGT00950000183033.a.b.a	ENSGT00940000178904	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT01010000228726	ENSGT00950000182907.a.b.b.a	ENSGT00960000190222	ENSGT00390000004643	ENSGT00940000167108	ENSGT00940000165650	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00940000153942.a.e.a	ENSGT00390000005708	ENSGT00940000169573
Ovalentaria	ANCESTRAL SPECIES		ENSGT00390000017043	ENSGT00940000156171.g	ENSGT00940000154950.y.a.d	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00940000153216.a.b	ENSGT00950000183033.a.b.a	ENSGT00940000178904	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT01010000228726	ENSGT00950000182907.a.b.b.a	ENSGT00940000176008	ENSGT00390000004643	ENSGT00940000167108	ENSGT00940000165650	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00940000153942.a.e.a	ENSGT00390000005708	ENSGT00940000169573
Atherinomorphae	ANCESTRAL SPECIES	20	ENSGT00940000157587.k	ENSGT00490000044733	ENSGT00390000017043	ENSGT00940000156171.g	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00940000153216.a.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT01010000228726	ENSGT00950000182907.a.b.b.a	ENSGT00940000176008	ENSGT00390000004643	ENSGT00940000167108	ENSGT00940000165650	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00390000005708.i	ENSGT00940000153942.a.e.a	ENSGT00390000005708.j.a
Cyprinodontiformes	ANCESTRAL SPECIES	18	ENSGT00940000157587.k	ENSGT00490000044733	ENSGT00390000017043	ENSGT00940000156171.g	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00940000153216.a.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT01010000228726	ENSGT00950000182907.a.b.b.a	ENSGT00940000176008	ENSGT00390000004643	ENSGT00940000167108	ENSGT00940000165650	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00390000005708.j.a	ENSGT00390000005708.j.b	ENSGT00940000169573
Aplocheiloidei	ANCESTRAL SPECIES	17	ENSGT00940000157297	ENSGT00940000158403	ENSGT00940000156801.h	ENSGT00940000157587.k	ENSGT00490000044733	ENSGT00390000017043	ENSGT00940000156171.g	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT01010000228726	ENSGT00950000182907.a.b.b.a	ENSGT00390000004643	ENSGT00940000167108	ENSGT00940000165650	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00390000005708.j.a	ENSGT00390000005708.j.b	ENSGT00950000182917.a.a.a.b	ENSGT00940000157887
Turquoise killifish	MODERN SPECIES	1611	INPP4B (ENSNFUG00015003385)	ENSNFUG00015003434	ZNF330 (ENSNFUG00015003443)	TBC1D9 (ENSNFUG00015003633)	ucp1 (ENSNFUG00015004344)	ENSNFUG00015004351	ELMOD2 (ENSNFUG00015004358)	GPRIN3 (ENSNFUG00015004361)	ENSNFUG00015004363	ENSNFUG00015004365	ENSNFUG00015004369	PPM1K (ENSNFUG00015004373)	herc3 (ENSNFUG00015004395)	ENSNFUG00015004402	ENSNFUG00015004432	g3bp2a (ENSNFUG00015004548) ##22	uso1 (ENSNFUG00015004623)	CORO2A (ENSNFUG00015004781)	ENSNFUG00015004904	anp32b (ENSNFUG00015004927)	trmo (ENSNFUG00015004965)	SPAG5 (ENSNFUG00015004985)	ENSNFUG00015005024	ENSNFUG00015005039	CNTLN (ENSNFUG00015005125)	ENSNFUG00015005151	bnc2 (ENSNFUG00015005160)	ENSNFUG00015005179	ENSNFUG00015005180	PSIP1 (ENSNFUG00015005189)	SNAPC3 (ENSNFUG00015005205)
Mangrove rivulus	MODERN SPECIES		znf330 (ENSKMAG00000003483)	rnf150a (ENSKMAG00000003468)	TBC1D9 (ENSKMAG00000003367)	ucp1 (ENSKMAG00000003320)	elmod2 (ENSKMAG00000003275)	ENSKMAG00000003259	zgc:154142 (ENSKMAG00000003230)	ENSKMAG00000003203	ENSKMAG00000003186	ENSKMAG00000003176	FAM13A (ENSKMAG00000003069)	herc3 (ENSKMAG00000002959)	ppm1kb (ENSKMAG00000002919)	abcg2d (ENSKMAG00000002783)	pkd2 (ENSKMAG00000002727)	g3bp2a (ENSKMAG00000002648) ##22	uso1 (ENSKMAG00000002486)	coro2aa (ENSKMAG00000002402)	anp32b (ENSKMAG00000002386)	trmo (ENSKMAG00000002369)	ENSKMAG00000002357	ENSKMAG00000002349	sh3gl2a (ENSKMAG00000002271)	CNTLN (ENSKMAG00000002221)	bnc2 (ENSKMAG00000002145)	ENSKMAG00000002111	ENSKMAG00000002097	TTC39B (ENSKMAG00000002037)	dnajb14 (ENSKMAG00000002026)	pla2g12a (ENSKMAG00000002001)	casp6a (ENSKMAG00000001983)
Cyprinodontoidei	ANCESTRAL SPECIES	24	ENSGT00940000157587.k	ENSGT00490000044733	ENSGT00390000017043	ENSGT00940000156171.g	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00940000153216.a.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT00950000182907.a.b.b.a	ENSGT00940000176008	ENSGT00390000004643	ENSGT00940000167108	ENSGT00940000165650	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00940000153942.a.e.a	ENSGT00390000005708.i	ENSGT00950000182917.a.a.a.b	ENSGT00940000157887
Poeciliinae	ANCESTRAL SPECIES	9	ENSGT00940000157587.k	ENSGT00490000044733	ENSGT00390000017043	ENSGT00940000156171.g	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00940000153216.a.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT00950000182907.a.b.b.a	ENSGT00390000004643.c	ENSGT00940000176008	ENSGT00390000004643.d	ENSGT00940000167108	ENSGT00940000165650	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00940000153942.a.e.a	ENSGT00390000005708.i	ENSGT00950000182917.a.a.a.b
Poecilia	ANCESTRAL SPECIES	36	ENSGT00940000157587.k	ENSGT00490000044733	ENSGT00390000017043	ENSGT00940000156171.g	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00940000153216.a.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT00950000182907.a.b.b.a	ENSGT00390000004643.d	ENSGT00940000167108	ENSGT00940000165650	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00940000153942.a.e.a	ENSGT00390000005708.i	ENSGT00950000182917.a.a.a.b	ENSGT00940000157887	ENSGT00390000008798.c
NAME_6	ANCESTRAL SPECIES	170	ENSGT00940000156801.h	ENSGT00940000157587.k	ENSGT00490000044733	ENSGT00390000017043	ENSGT00940000156171.g	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b.g
Sailfin molly	MODERN SPECIES	411		ENSPLAG00000001102	znf330 (ENSPLAG00000001107)	rnf150a (ENSPLAG00000001110)	TBC1D9 (ENSPLAG00000001114)	ucp1 (ENSPLAG00000001117)	elmod2 (ENSPLAG00000001120)	ENSPLAG00000001122	zgc:154142 (ENSPLAG00000001125)	ENSPLAG00000001127	FAM13A (ENSPLAG00000001131)	herc3 (ENSPLAG00000001140)	ppm1kb (ENSPLAG00000001142)	abcg2d (ENSPLAG00000001176)	pkd2 (ENSPLAG00000001192)	g3bp2a (ENSPLAG00000001201) ##22	uso1 (ENSPLAG00000001220)
Amazon molly	MODERN SPECIES	382	gab1 (ENSPFOG00000007416)	INPP4B (ENSPFOG00000007067)	ENSPFOG00000007054	znf330 (ENSPFOG00000006958)	rnf150a (ENSPFOG00000006882)	TBC1D9 (ENSPFOG00000006407)	ucp1 (ENSPFOG00000006307)	elmod2 (ENSPFOG00000006198)	ENSPFOG00000024226	zgc:154142 (ENSPFOG00000006076)	FAM13A (ENSPFOG00000005807)	herc3 (ENSPFOG00000005400)	ppm1kb (ENSPFOG00000005312)	abcg2d (ENSPFOG00000005134)	pkd2 (ENSPFOG00000004932)	g3bp2a (ENSPFOG00000004671) ##22	uso1 (ENSPFOG00000004276)
Guppy	MODERN SPECIES	439	ENSPREG00000000645	znf330 (ENSPREG00000000669)	rnf150a (ENSPREG00000000715)	TBC1D9 (ENSPREG00000000815)	ucp1 (ENSPREG00000000928)	elmod2 (ENSPREG00000001317)	ENSPREG00000001339	ENSPREG00000001356	zgc:154142 (ENSPREG00000001381)	ENSPREG00000001463	FAM13A (ENSPREG00000001492)	herc3 (ENSPREG00000001535)	ppm1kb (ENSPREG00000001628)	abcg2d (ENSPREG00000001660)	pkd2 (ENSPREG00000001710)	g3bp2a (ENSPREG00000001772) ##22	uso1 (ENSPREG00000001809)	coro2aa (ENSPREG00000001861)	anp32b (ENSPREG00000001929)	ENSPREG00000002094	trmo (ENSPREG00000002099)	ENSPREG00000002128	ENSPREG00000002193	sh3gl2a (ENSPREG00000002204)	CNTLN (ENSPREG00000002247)	bnc2 (ENSPREG00000002287)	ENSPREG00000002308	ENSPREG00000002334	snapc3 (ENSPREG00000002341)	TTC39B (ENSPREG00000002363)	dnajb14 (ENSPREG00000002423)
Platyfish	MODERN SPECIES	19	gab1 (ENSXMAG00000009734)	INPP4B (ENSXMAG00000026556)	ENSXMAG00000009776	znf330 (ENSXMAG00000030008)	rnf150a (ENSXMAG00000009793)	TBC1D9 (ENSXMAG00000009805)	ucp1 (ENSXMAG00000009829)	elmod2 (ENSXMAG00000009842)	ENSXMAG00000020181	zgc:154142 (ENSXMAG00000009854)	FAM13A (ENSXMAG00000009862)	herc3 (ENSXMAG00000009868)	ppm1kb (ENSXMAG00000009932)	abcg2d (ENSXMAG00000009943)	pkd2 (ENSXMAG00000009982)	g3bp2a (ENSXMAG00000010011) ##22	uso1 (ENSXMAG00000010026)	coro2aa (ENSXMAG00000010062)	anp32b (ENSXMAG00000022716)	ENSXMAG00000010083	trmo (ENSXMAG00000022096)	ENSXMAG00000010084	ENSXMAG00000020182	ENSXMAG00000028657	sh3gl2a (ENSXMAG00000022099)	CNTLN (ENSXMAG00000010105)	ENSXMAG00000026048	ENSXMAG00000021385	bnc2 (ENSXMAG00000024270)	PSIP1 (ENSXMAG00000010112)	snapc3 (ENSXMAG00000010120)
NAME_4	ANCESTRAL SPECIES	75	ENSGT00940000156801.h	ENSGT00940000157587.k	ENSGT00490000044733	ENSGT00390000017043	ENSGT00940000156171.g	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT00950000182907.a.b.b.a	ENSGT00390000004643	ENSGT00940000167108	ENSGT00940000165650	ENSGT00940000160529	ENSGT00440000034932
Mummichog	MODERN SPECIES	339												ENSFHEG00000017886	ppm1kb (ENSFHEG00000017903)	abcg2d (ENSFHEG00000018633)	pkd2 (ENSFHEG00000018665)	g3bp2a (ENSFHEG00000018770) ##22	uso1 (ENSFHEG00000018804)	coro2aa (ENSFHEG00000018819)	anp32b (ENSFHEG00000018844)	trmo (ENSFHEG00000018847)	ENSFHEG00000018860	ENSFHEG00000018868	sh3gl2a (ENSFHEG00000018948)	ENSFHEG00000018963
Sheepshead minnow	MODERN SPECIES	1262													ENSCVAG00000011618	abcg2d (ENSCVAG00000011599)	pkd2 (ENSCVAG00000011075)	g3bp2a (ENSCVAG00000011014) ##22	uso1 (ENSCVAG00000010793)	coro2aa (ENSCVAG00000010742)
Oryzias	ANCESTRAL SPECIES	15	ENSGT00940000158403	ENSGT00940000156801.h	ENSGT00940000157587.k	ENSGT00490000044733	ENSGT00390000017043	ENSGT00940000156171.g	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a.k	ENSGT00950000182907.a.b.b.a	ENSGT00390000004643	ENSGT00940000167108	ENSGT00940000165650	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000005708.j.a	ENSGT00940000153942.a.e.a	ENSGT00940000154706.rb.b	ENSGT00950000182917.a.a.a.b	ENSGT00940000157887	ENSGT00390000008798.c
Oryzias_b	ANCESTRAL SPECIES	21	ENSGT00940000158403	ENSGT00940000156801.h	ENSGT00940000157587.k	ENSGT00490000044733	ENSGT00390000017043	ENSGT00940000156171.g	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376.a	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a.k	ENSGT00950000182907.a.b.b.a	ENSGT00390000004643	ENSGT00940000167108	ENSGT00940000165650	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000005708.j.a	ENSGT00940000154706.rb.b	ENSGT00950000182917.a.a.a.b	ENSGT00940000157887	ENSGT00390000008798.c	ENSGT00940000155140.cb
Javanese ricefish	MODERN SPECIES		ENSOJAG00000000750	gab1 (ENSOJAG00000000768)	INPP4B (ENSOJAG00000000898)	ENSOJAG00000001222	znf330 (ENSOJAG00000001223)	rnf150a (ENSOJAG00000001233)	ucp1 (ENSOJAG00000001268)	elmod2 (ENSOJAG00000001273)	ENSOJAG00000001287	FAM13A (ENSOJAG00000001297)	ENSOJAG00000001316	herc3 (ENSOJAG00000001374)	ppm1kb (ENSOJAG00000001441)	abcg2d (ENSOJAG00000001514)	pkd2 (ENSOJAG00000001850)	g3bp2a (ENSOJAG00000002124) ##22	uso1 (ENSOJAG00000002287)	coro2aa (ENSOJAG00000002437)	anp32b (ENSOJAG00000002470)	trmo (ENSOJAG00000002498)	ENSOJAG00000002513	sh3gl2a (ENSOJAG00000002576)	ENSOJAG00000002736	bnc2 (ENSOJAG00000002762)	snapc3 (ENSOJAG00000002782)	ENSOJAG00000002795	ENSOJAG00000002829	dnajb14 (ENSOJAG00000002918)	pla2g12a (ENSOJAG00000002931)	CASP6 (ENSOJAG00000002954)	CASP6 (ENSOJAG00000002964)
Indian medaka	MODERN SPECIES	21																g3bp2a (ENSOMEG00000004775) ##22	uso1 (ENSOMEG00000000893)	coro2aa (ENSOMEG00000004975)	anp32b (ENSOMEG00000005001)	trmo (ENSOMEG00000005012)	ENSOMEG00000005063	ENSOMEG00000005077	sh3gl2a (ENSOMEG00000005229)	ENSOMEG00000005353	bnc2 (ENSOMEG00000005391)	snapc3 (ENSOMEG00000005458)	ENSOMEG00000005526	ENSOMEG00000005692	dnajb14 (ENSOMEG00000005749)	pla2g12a (ENSOMEG00000005763)	CASP6 (ENSOMEG00000005778)
Oryzias_a	ANCESTRAL SPECIES	120													ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a.k	ENSGT00950000182907.a.b.b.a	ENSGT00390000004643	ENSGT00940000167108	ENSGT00940000165650	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b
Japanese Medaka HdrR	MODERN SPECIES		ccdc149b (ENSORLG00000023354)	SOD3 (ENSORLG00000019434)	dhx15 (ENSORLG00000029010)	ENSORLG00000019452	ENSORLG00000019459	ENSORLG00000024687	ENSORLG00000029978	myoz2b (ENSORLG00000019473)	USP53 (ENSORLG00000028332)	gucy1b1 (ENSORLG00000019522)	ENSORLG00000026907	ppm1kb (ENSORLG00000006934)	abcg2d (ENSORLG00000006979)	pkd2 (ENSORLG00000007003)	ENSORLG00000024233	g3bp2a (ENSORLG00000026412) ##22	uso1 (ENSORLG00000007034)	coro2aa (ENSORLG00000007071)	anp32b (ENSORLG00000007077)	trmo (ENSORLG00000007098)	ENSORLG00000026000	foxe1 (ENSORLG00000007101)	sh3gl2a (ENSORLG00000007131)	ENSORLG00000007144	ENSORLG00000024000	bnc2 (ENSORLG00000007162)	ENSORLG00000026982	ENSORLG00000027843	ENSORLG00000029140	ENSORLG00000028051	ENSORLG00000024714
Chinese medaka	MODERN SPECIES	1178													ppm1kb (ENSOSIG00000013768)	abcg2d (ENSOSIG00000013804)	pkd2 (ENSOSIG00000014290)	g3bp2a (ENSOSIG00000015338) ##22	ENSOSIG00000015342
Ovalentaria_B	ANCESTRAL SPECIES	4	ENSGT00390000017043	ENSGT00940000156171.g	ENSGT00940000154950.y.a.d	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00940000182021	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a	ENSGT00940000178904	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT00950000182907.a.b.b.a	ENSGT00940000176008	ENSGT00390000004643	ENSGT00940000167108	ENSGT00940000165650	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00940000153942.a.e.a	ENSGT00390000005708	ENSGT00940000169573	ENSGT00950000182917.a.a.a.b
Cichlidae	ANCESTRAL SPECIES	3	ENSGT00390000017043	ENSGT00940000156171.g	ENSGT00940000154950.y.a.d	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00940000182021	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a	ENSGT00940000178904	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT00950000182907.a.b.b.a	ENSGT00940000176008	ENSGT00390000004643	ENSGT00940000167108	ENSGT00940000165650	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00940000153942.a.e.a	ENSGT00390000005708	ENSGT00940000169573	ENSGT00950000182917.a.a.a.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	3	ENSGT00940000157587.k	ENSGT00490000044733	ENSGT00390000017043	ENSGT00940000156171.g	ENSGT00940000154950.y.a.d	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT00950000182907.a.b.b.a	ENSGT00940000176008	ENSGT00390000004643	ENSGT00940000167108	ENSGT00940000165650	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00940000153942.a.e.a	ENSGT00390000005708	ENSGT00940000169573	ENSGT00950000182917.a.a.a.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	5	ENSGT00940000157587.k	ENSGT00490000044733	ENSGT00390000017043	ENSGT00940000156171.g	ENSGT00940000154950.y.a.d	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT00950000182907.a.b.b.a	ENSGT00940000176008	ENSGT00390000004643	ENSGT00940000167108	ENSGT00940000165650	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00940000153942.a.e.a	ENSGT00390000005708	ENSGT00940000169573	ENSGT00950000182917.a.a.a.b
Haplochromini	ANCESTRAL SPECIES	3	ENSGT00940000157587.k	ENSGT00490000044733	ENSGT00390000017043	ENSGT00940000156171.g	ENSGT00940000154950.y.a.d	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT00950000182907.a.b.b.a	ENSGT00390000004643	ENSGT00940000167108	ENSGT00940000165650	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00940000153942.a.e.a	ENSGT00390000005708	ENSGT00940000169573	ENSGT00950000182917.a.a.a.b	ENSGT00940000157887
Burton s mouthbrooder	MODERN SPECIES	413	INPP4B (ENSHBUG00000009289)	ENSHBUG00000009144	znf330 (ENSHBUG00000009129)	rnf150a (ENSHBUG00000009077)	TBC1D9 (ENSHBUG00000009060)	ucp1 (ENSHBUG00000008949)	elmod2 (ENSHBUG00000008927)	ENSHBUG00000008891	zgc:154142 (ENSHBUG00000008878)	ENSHBUG00000008759	FAM13A (ENSHBUG00000007622)	herc3 (ENSHBUG00000007549)	ppm1kb (ENSHBUG00000000191)	abcg2d (ENSHBUG00000007462)	pkd2 (ENSHBUG00000007421)	g3bp2a (ENSHBUG00000007387) ##22	uso1 (ENSHBUG00000007291)	coro2aa (ENSHBUG00000007104)	anp32b (ENSHBUG00000007083)	trmo (ENSHBUG00000007059)	ENSHBUG00000007024	sh3gl2a (ENSHBUG00000006885)	CNTLN (ENSHBUG00000006789)	bnc2 (ENSHBUG00000006756)	PSIP1 (ENSHBUG00000006653)	snapc3 (ENSHBUG00000006624)	ENSHBUG00000006616
Haplochromini_A	ANCESTRAL SPECIES	2	ENSGT00940000157587.k	ENSGT00490000044733	ENSGT00390000017043	ENSGT00940000156171.g	ENSGT00940000154950.y.a.d	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT00950000182907.a.b.b.a	ENSGT00390000004643	ENSGT00940000167108	ENSGT00940000165650	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00940000153942.a.e.a	ENSGT00390000005708	ENSGT00940000169573	ENSGT00950000182917.a.a.a.b	ENSGT00940000157887
P. nyererei	MODERN SPECIES	317	znf330 (ENSPNYG00000012078)	rnf150a (ENSPNYG00000012052)	ENSPNYG00000012011	TBC1D9 (ENSPNYG00000011965)	ucp1 (ENSPNYG00000011941)	elmod2 (ENSPNYG00000011913)	ENSPNYG00000011900	zgc:154142 (ENSPNYG00000011477)	ENSPNYG00000011338	ENSPNYG00000011326	FAM13A (ENSPNYG00000011283)	herc3 (ENSPNYG00000011226)	ppm1kb (ENSPNYG00000011197)	abcg2d (ENSPNYG00000010963)	pkd2 (ENSPNYG00000010864)	g3bp2a (ENSPNYG00000010813) ##22	uso1 (ENSPNYG00000010717)	coro2aa (ENSPNYG00000010586)	anp32b (ENSPNYG00000010543)	trmo (ENSPNYG00000010524)	ENSPNYG00000010483	sh3gl2a (ENSPNYG00000010441)	ENSPNYG00000010397	bnc2 (ENSPNYG00000010353)	ENSPNYG00000010337	snapc3 (ENSPNYG00000010319)	TTC39B (ENSPNYG00000010287)	dnajb14 (ENSPNYG00000010257)	pla2g12a (ENSPNYG00000010243)	CASP6 (ENSPNYG00000010228)	CASP6 (ENSPNYG00000010206)
Haplochromini_B	ANCESTRAL SPECIES	8	ENSGT00940000157587.k	ENSGT00490000044733	ENSGT00390000017043	ENSGT00940000156171.g	ENSGT00940000154950.y.a.d	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT00950000182907.a.b.b.a	ENSGT00390000004643	ENSGT00940000167108	ENSGT00940000165650	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00940000153942.a.e.a	ENSGT00390000005708	ENSGT00940000169573	ENSGT00950000182917.a.a.a.b	ENSGT00940000157887
Eastern happy	MODERN SPECIES	18	znf330 (ENSACLG00000024905)	rnf150a (ENSACLG00000024899)	ENSACLG00000024885	TBC1D9 (ENSACLG00000024858)	ucp1 (ENSACLG00000024214)	elmod2 (ENSACLG00000024210)	ENSACLG00000024205	zgc:154142 (ENSACLG00000024201)	ENSACLG00000023413	FAM13A (ENSACLG00000023269)	herc3 (ENSACLG00000023117)	ppm1kb (ENSACLG00000023085)	ENSACLG00000023078	abcg2d (ENSACLG00000023066)	pkd2 (ENSACLG00000023026)	g3bp2a (ENSACLG00000022950) ##22	ENSACLG00000022939	uso1 (ENSACLG00000022762)	coro2aa (ENSACLG00000022716)	anp32b (ENSACLG00000022703)	trmo (ENSACLG00000022684)	ENSACLG00000022641	ENSACLG00000022633	sh3gl2a (ENSACLG00000022586)	bnc2 (ENSACLG00000022554)	ENSACLG00000022459	ENSACLG00000022435	ENSACLG00000022412	snapc3 (ENSACLG00000022392)	TTC39B (ENSACLG00000022346)	dnajb14 (ENSACLG00000022293)
Zebra mbuna	MODERN SPECIES	1109	ENSMZEG00005009512	znf330 (ENSMZEG00005009522)	rnf150a (ENSMZEG00005009552)	ENSMZEG00005009578	TBC1D9 (ENSMZEG00005009608)	ucp1 (ENSMZEG00005009660)	elmod2 (ENSMZEG00005009673)	ENSMZEG00005009696	zgc:154142 (ENSMZEG00005009708)	ENSMZEG00005009833	FAM13A (ENSMZEG00005019296)	herc3 (ENSMZEG00005019314)	ppm1kb (ENSMZEG00005019331)	abcg2d (ENSMZEG00005019342)	pkd2 (ENSMZEG00005019397)	g3bp2a (ENSMZEG00005019412) ##22	uso1 (ENSMZEG00005019428)	coro2aa (ENSMZEG00005019481)	anp32b (ENSMZEG00005019491)	trmo (ENSMZEG00005019493)	ENSMZEG00005019501	sh3gl2a (ENSMZEG00005019518)	CNTLN (ENSMZEG00005019524)	bnc2 (ENSMZEG00005019538)	ENSMZEG00005019541	ENSMZEG00005019544	ENSMZEG00005019547	ENSMZEG00005019549	TTC39B (ENSMZEG00005019551)	dnajb14 (ENSMZEG00005019556)	pla2g12a (ENSMZEG00005019560)
Lyretail cichlid	MODERN SPECIES	301	znf330 (ENSNBRG00000009682)	rnf150a (ENSNBRG00000009713)	ENSNBRG00000009760	TBC1D9 (ENSNBRG00000009805)	ucp1 (ENSNBRG00000009854)	elmod2 (ENSNBRG00000009864)	ENSNBRG00000009885	ENSNBRG00000009904	zgc:154142 (ENSNBRG00000010128)	ENSNBRG00000011650	FAM13A (ENSNBRG00000011664)	herc3 (ENSNBRG00000011703)	ppm1kb (ENSNBRG00000011755)	abcg2d (ENSNBRG00000011778)	pkd2 (ENSNBRG00000011817)	g3bp2a (ENSNBRG00000011881) ##22	uso1 (ENSNBRG00000011934)	coro2aa (ENSNBRG00000011998)	anp32b (ENSNBRG00000012026)	ENSNBRG00000012042	trmo (ENSNBRG00000012051)	ENSNBRG00000012069	sh3gl2a (ENSNBRG00000012125)	bnc2 (ENSNBRG00000012189)	ENSNBRG00000012300	ENSNBRG00000012312	TTC39B (ENSNBRG00000012328)	dnajb14 (ENSNBRG00000012370)	pla2g12a (ENSNBRG00000012392)	CASP6 (ENSNBRG00000012403)	CASP6 (ENSNBRG00000012429)
Nile tilapia	MODERN SPECIES	18	INPP4B (ENSONIG00000017409)	ENSONIG00000025173	ENSONIG00000017414	znf330 (ENSONIG00000017416)	rnf150 (ENSONIG00000030179)	ENSONIG00000036912	TBC1D9 (ENSONIG00000017420)	ucp1 (ENSONIG00000029627)	elmod2 (ENSONIG00000017427)	ENSONIG00000017440	zgc:154142 (ENSONIG00000017438)	herc3 (ENSONIG00000017442)	ppm1k (ENSONIG00000017445)	abcg2d (ENSONIG00000017446)	pkd2 (ENSONIG00000017449)	g3bp2a (ENSONIG00000017454) ##22	uso1 (ENSONIG00000017455)	coro2aa (ENSONIG00000017463)	anp32b (ENSONIG00000017468)	trmo (ENSONIG00000017470)	ENSONIG00000017471	ENSONIG00000020567	sh3gl2a (ENSONIG00000017474)	CNTLN (ENSONIG00000017478)	bnc2 (ENSONIG00000031608)	ENSONIG00000032799	ENSONIG00000017484	snapc3 (ENSONIG00000017485)	TTC39B (ENSONIG00000017486)	dnajb14 (ENSONIG00000017488)	pla2g12a (ENSONIG00000017490)
Midas cichlid	MODERN SPECIES	500	ENSACIG00000017258	TBC1D9 (ENSACIG00000017296)	ucp1 (ENSACIG00000017327)	elmod2 (ENSACIG00000017346)	ENSACIG00000017357	ENSACIG00000017361	zgc:154142 (ENSACIG00000017367)	ENSACIG00000017440	ENSACIG00000018084	FAM13A (ENSACIG00000018094)	ENSACIG00000018132	herc3 (ENSACIG00000018143)	ppm1kb (ENSACIG00000018202)	abcg2d (ENSACIG00000018244)	pkd2 (ENSACIG00000018464)	g3bp2a (ENSACIG00000018498) ##22	uso1 (ENSACIG00000018529)	coro2aa (ENSACIG00000018569)	anp32b (ENSACIG00000018600)	trmo (ENSACIG00000018770)	ENSACIG00000018783	sh3gl2a (ENSACIG00000018810)	ENSACIG00000018822	ENSACIG00000018826	bnc2 (ENSACIG00000018850)	ENSACIG00000018874	ENSACIG00000018882	ENSACIG00000018890	ENSACIG00000018897	dnajb14 (ENSACIG00000018914)	pla2g12a (ENSACIG00000018966)
Pomacentridae	ANCESTRAL SPECIES	8	ENSGT00490000044733	ENSGT00390000017043	ENSGT00940000156171.g	ENSGT00940000154950.y.a.d	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00940000182021	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT00950000182907.a.b.b.a	ENSGT00390000004643	ENSGT00940000167108	ENSGT00940000165650	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00390000005708	ENSGT00950000182917.a.a.a.b	ENSGT00940000157887	ENSGT00390000008798.c	ENSGT00940000155140
Bicolor damselfish	MODERN SPECIES	986					ucp1 (ENSSPAG00000007699)	elmod2 (ENSSPAG00000007728)	ENSSPAG00000007766	ENSSPAG00000007773	zgc:154142 (ENSSPAG00000007786)	ENSSPAG00000007940	FAM13A (ENSSPAG00000009260)	herc3 (ENSSPAG00000009420)	ppm1kb (ENSSPAG00000009517)	abcg2d (ENSSPAG00000009548)	pkd2 (ENSSPAG00000009765)	g3bp2a (ENSSPAG00000009800) ##22	uso1 (ENSSPAG00000009878)	coro2aa (ENSSPAG00000010127)	anp32b (ENSSPAG00000010196)	trmo (ENSSPAG00000010469)
Pomacentridae_A	ANCESTRAL SPECIES	50	ENSGT00390000016264	ENSGT00490000044733	ENSGT00390000017043	ENSGT00940000156171.g	ENSGT00940000154950.y.a.d	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT00950000182907.a.b.b.a	ENSGT00390000004643	ENSGT00940000167108	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00390000005708	ENSGT00950000182917.a.a.a.b	ENSGT00940000157887	ENSGT00390000008798.c	ENSGT00940000155140	ENSGT00940000158059.g
Spiny chromis	MODERN SPECIES	333				ENSAPOG00000001656	ucp1 (ENSAPOG00000001636)	elmod2 (ENSAPOG00000001618)	ENSAPOG00000001603	zgc:154142 (ENSAPOG00000001592)	ENSAPOG00000001567	FAM13A (ENSAPOG00000001561)	herc3 (ENSAPOG00000024514)	ppm1kb (ENSAPOG00000024493)	abcg2d (ENSAPOG00000024475)	ENSAPOG00000024416	pkd2 (ENSAPOG00000024394)	g3bp2a (ENSAPOG00000024387) ##22	ENSAPOG00000024349
Amphiprion	ANCESTRAL SPECIES		ENSGT00490000044733	ENSGT00390000017043	ENSGT00940000156171.g	ENSGT00940000154950.y.a.d	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a	ENSGT00940000178904	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT00950000182907.a.b.b.a	ENSGT00390000004643	ENSGT00940000167108	ENSGT00940000160529	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00390000005708	ENSGT00950000182917.a.a.a.b	ENSGT00940000157887	ENSGT00390000008798.c	ENSGT00940000155140	ENSGT00940000158059.g	ENSGT00940000159660.j
Orange clownfish	MODERN SPECIES	17	rnf150a (ENSAPEG00000011567)	aimp1a (ENSAPEG00000011617)	TBC1D9 (ENSAPEG00000011638)	ucp1 (ENSAPEG00000011739)	elmod2 (ENSAPEG00000011781)	ENSAPEG00000011829	zgc:154142 (ENSAPEG00000011841)	ENSAPEG00000011972	ENSAPEG00000012618	ENSAPEG00000012682	FAM13A (ENSAPEG00000012697)	herc3 (ENSAPEG00000012760)	ppm1kb (ENSAPEG00000012881)	abcg2d (ENSAPEG00000012923)	pkd2 (ENSAPEG00000013169)	g3bp2a (ENSAPEG00000013191) ##22	uso1 (ENSAPEG00000013266)	coro2aa (ENSAPEG00000013427)	anp32b (ENSAPEG00000013481)	trmo (ENSAPEG00000013504)	ENSAPEG00000013521	sh3gl2a (ENSAPEG00000013596)	bnc2 (ENSAPEG00000013800)	PSIP1 (ENSAPEG00000013846)	snapc3 (ENSAPEG00000013868)	TTC39B (ENSAPEG00000013901)	dnajb14 (ENSAPEG00000013959)	pla2g12a (ENSAPEG00000013988)	casp6a (ENSAPEG00000014029)	MCUB (ENSAPEG00000014066)	lef1 (ENSAPEG00000014112)
Clown anemonefish	DUPLICATION
Clown anemonefish	MODERN SPECIES	2232											ENSAOCG00000023344	herc3 (ENSAOCG00000023400)	ppm1kb (ENSAOCG00000023428)	abcg2d (ENSAOCG00000023470)	pkd2 (ENSAOCG00000023519)	g3bp2a (ENSAOCG00000023536) ##22
Clown anemonefish	MODERN SPECIES	2055															pkd2 (ENSAOCG00000001743)	g3bp2a (ENSAOCG00000023808) ##22	uso1 (ENSAOCG00000023936)
Percomorphaceae_C	ANCESTRAL SPECIES	3	ENSGT00940000156171.g	ENSGT00940000154950.y.a.d	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00940000153216.a.b	ENSGT00950000183033.a.a.c.b	ENSGT00950000183033.a.b.a	ENSGT00940000178904	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT01010000228726	ENSGT00950000182907.a.b.b.a	ENSGT00960000190222	ENSGT00390000004643	ENSGT00940000167108	ENSGT00940000165650	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00940000153942.a.e.a	ENSGT00390000005708	ENSGT00950000182917.a.a.a.b
Percomorphaceae_D	ANCESTRAL SPECIES		ENSGT00390000017043	ENSGT00940000156171.g	ENSGT00940000154950.y.a.d	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.a.c.b.m.a	ENSGT00950000183033.a.b.a	ENSGT00940000178904	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT01010000228726	ENSGT00950000182907.a.b.b.a	ENSGT00390000004643	ENSGT00940000167108	ENSGT00940000165650	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00940000153942.a.e.a	ENSGT00390000005708	ENSGT00950000182917.a.a.a.b	ENSGT00940000157887
Carangaria	ANCESTRAL SPECIES		ENSGT00490000044733	ENSGT00390000017043	ENSGT00940000156171.g	ENSGT00940000154950.y.a.d	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.a.c.b.m.a	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT00950000182907.a.b.b.a	ENSGT00390000004643	ENSGT00940000167108	ENSGT00940000165650	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00940000153942.a.e.a	ENSGT00390000005708	ENSGT00950000182917.a.a.a.b	ENSGT00940000157887	ENSGT00390000008798.c
Pleuronectoidei	ANCESTRAL SPECIES	21	ENSGT00490000044733	ENSGT00390000017043	ENSGT00940000156171.g	ENSGT00940000154950.y.a.d	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.a.c.b.m.a	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT00950000182907.a.b.b.a	ENSGT00390000004643	ENSGT00940000167108	ENSGT00940000165650	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00390000005708	ENSGT00950000182917.a.a.a.b	ENSGT00940000157887	ENSGT00390000008798.c	ENSGT00940000155140
Tongue sole	MODERN SPECIES	19	LRRTM1 (ENSCSEG00000009356)	suclg1 (ENSCSEG00000009370)	cisd2 (ENSCSEG00000009437)	ENSCSEG00000009405	bdh2 (ENSCSEG00000009447)	TACR3 (ENSCSEG00000009462)	cnga1a (ENSCSEG00000009469)	scpp5 (ENSCSEG00000009482)	ENSCSEG00000009491	odam (ENSCSEG00000009497)	ENSCSEG00000009518 ##20	ENSCSEG00000009545	aptx (ENSCSEG00000009549)	dnaja1 (ENSCSEG00000009567)	SMU1 (ENSCSEG00000009575)	g3bp2a (ENSCSEG00000009591) ##22	uso1 (ENSCSEG00000009613)	coro2aa (ENSCSEG00000009640)	anp32b (ENSCSEG00000009653)	trmo (ENSCSEG00000009666)	ENSCSEG00000009669	sh3gl2a (ENSCSEG00000009692)	bnc2 (ENSCSEG00000009710)	PSIP1 (ENSCSEG00000009731)	snapc3 (ENSCSEG00000009790)	TTC39B (ENSCSEG00000009806)	dnajb14 (ENSCSEG00000009833)	pla2g12a (ENSCSEG00000009836)	casp6a (ENSCSEG00000009858)	ENSCSEG00000009844	lef1 (ENSCSEG00000009871)
Turbot	MODERN SPECIES	20	INPP4B (ENSSMAG00000004999)	ENSSMAG00000032235	znf330 (ENSSMAG00000005173)	rnf150a (ENSSMAG00000005200)	ENSSMAG00000005210	TBC1D9 (ENSSMAG00000005232)	ucp1 (ENSSMAG00000005526)	elmod2 (ENSSMAG00000036172)	ENSSMAG00000005541	zgc:154142 (ENSSMAG00000005567)	FAM13A (ENSSMAG00000005633)	herc3 (ENSSMAG00000005759)	ppm1kb (ENSSMAG00000005847)	abcg2d (ENSSMAG00000005869)	pkd2 (ENSSMAG00000005899)	g3bp2a (ENSSMAG00000005956) ##22	uso1 (ENSSMAG00000005986)	coro2aa (ENSSMAG00000006127)	anp32b (ENSSMAG00000006150)	TRMO (ENSSMAG00000006315)	ENSSMAG00000006333	ENSSMAG00000006349	sh3gl2a (ENSSMAG00000006359)	CNTLN (ENSSMAG00000006501)	bnc2 (ENSSMAG00000006631)	ENSSMAG00000006676	SNAPC3 (ENSSMAG00000006705)	TTC39B (ENSSMAG00000006732)	ENSSMAG00000006769	PLA2G12A (ENSSMAG00000006813)	ENSSMAG00000006830
Carangaria_A	ANCESTRAL SPECIES	14	ENSGT00390000016264.b	ENSGT00490000044733	ENSGT00390000017043	ENSGT00940000156171.g	ENSGT00940000154950.y.a.d	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT00950000182907.a.b.b.a	ENSGT00390000004643	ENSGT00940000167108	ENSGT00940000165650	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00940000153942.a.e.a	ENSGT00390000005708	ENSGT00950000182917.a.a.a.b	ENSGT00940000157887	ENSGT00390000008798.c
Seriola	ANCESTRAL SPECIES	18	ENSGT00490000044733	ENSGT00390000017043	ENSGT00940000156171.g	ENSGT00940000154950.y.a.d	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT01030000234528.A.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT00950000182907.a.b.b.a	ENSGT00390000004643	ENSGT00940000167108	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00940000153942.a.e.a	ENSGT00390000005708	ENSGT00950000182917.a.a.a.b	ENSGT00940000157887	ENSGT00390000008798.c	ENSGT00940000155140
Greater amberjack	MODERN SPECIES	391			rnf150a (ENSSDUG00000006699)	ENSSDUG00000006723	TBC1D9 (ENSSDUG00000006790)	ucp1 (ENSSDUG00000006854)	elmod2 (ENSSDUG00000006873)	ENSSDUG00000006910	zgc:154142 (ENSSDUG00000006919)	ENSSDUG00000007026	FAM13A (ENSSDUG00000007740)	herc3 (ENSSDUG00000007794)	ppm1kb (ENSSDUG00000007874)	abcg2d (ENSSDUG00000007902)	pkd2 (ENSSDUG00000007941)	g3bp2a (ENSSDUG00000008013) ##22	uso1 (ENSSDUG00000008097)	coro2aa (ENSSDUG00000008243)	anp32b (ENSSDUG00000008282)	trmo (ENSSDUG00000008290)	ENSSDUG00000008304	sh3gl2a (ENSSDUG00000008361)	ENSSDUG00000008392
Yellowtail amberjack	MODERN SPECIES	3166											FAM13A (ENSSLDG00000022241)	herc3 (ENSSLDG00000022304)	ppm1kb (ENSSLDG00000022342)	abcg2d (ENSSLDG00000022417)	pkd2 (ENSSLDG00000022679)	g3bp2a (ENSSLDG00000022714) ##22	uso1 (ENSSLDG00000022762)	coro2aa (ENSSLDG00000022845)	anp32b (ENSSLDG00000022917)	trmo (ENSSLDG00000023112)	ENSSLDG00000023129	sh3gl2a (ENSSLDG00000023184)	ENSSLDG00000023215	ENSSLDG00000023237	bnc2 (ENSSLDG00000023268)	ENSSLDG00000023325	ENSSLDG00000023338	snapc3 (ENSSLDG00000023354)	TTC39B (ENSSLDG00000023365)	dnajb14 (ENSSLDG00000023379)	pla2g12a (ENSSLDG00000023397)
Barramundi perch	MODERN SPECIES	403	vps37c (ENSLCAG00010001661)	ENSLCAG00010001663	ENSLCAG00010001670	ENSLCAG00010001681	chchd10 (ENSLCAG00010001683)	ddt (ENSLCAG00010001687)	ucp1 (ENSLCAG00010001692)	elmod2 (ENSLCAG00010001699)	ENSLCAG00010001700	zgc:154142 (ENSLCAG00010001702)	FAM13A (ENSLCAG00010001726)	herc3 (ENSLCAG00010001789)	ppm1kb (ENSLCAG00010001833)	abcg2d (ENSLCAG00010001842)	pkd2 (ENSLCAG00010001870)	g3bp2a (ENSLCAG00010001979) ##22	uso1 (ENSLCAG00010002004)	coro2aa (ENSLCAG00010002088)	anp32b (ENSLCAG00010002104)	trmo (ENSLCAG00010002108)	ENSLCAG00010002110	ENSLCAG00010002118
Anabantaria	ANCESTRAL SPECIES	1	ENSGT00490000044733	ENSGT00390000017043	ENSGT00940000156171.g	ENSGT00940000154950.y.a.d	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a	ENSGT00940000178904	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT01010000228726	ENSGT00950000182907.a.b.b.a	ENSGT00390000004643	ENSGT00940000167108	ENSGT00940000165650	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00390000005708	ENSGT00950000182917.a.a.a.b	ENSGT00940000157887	ENSGT00390000008798.c
Zig-zag eel	MODERN SPECIES		ENSMAMG00000014501	znf330 (ENSMAMG00000014531)	rnf150a (ENSMAMG00000014583)	ENSMAMG00000014617	TBC1D9 (ENSMAMG00000014631)	ucp1 (ENSMAMG00000027805)	elmod2 (ENSMAMG00000026353)	ENSMAMG00000024792	zgc:154142 (ENSMAMG00000014783)	ENSMAMG00000014862	FAM13A (ENSMAMG00000015006)	herc3 (ENSMAMG00000015062)	ppm1kb (ENSMAMG00000026247)	abcg2d (ENSMAMG00000015109)	pkd2 (ENSMAMG00000015146)	g3bp2a (ENSMAMG00000015188) ##22	uso1 (ENSMAMG00000015241)	coro2aa (ENSMAMG00000015320)	ENSMAMG00000025519	anp32b (ENSMAMG00000015348)	TRMO (ENSMAMG00000015361)	ENSMAMG00000015377	ENSMAMG00000015406	sh3gl2a (ENSMAMG00000015411)	CNTLN (ENSMAMG00000015458)	bnc2 (ENSMAMG00000015501)	ENSMAMG00000015548	ENSMAMG00000025762	SNAPC3 (ENSMAMG00000015560)	TTC39B (ENSMAMG00000015572)	ENSMAMG00000015593
Anabantoidei	ANCESTRAL SPECIES		ENSGT00490000044733	ENSGT00390000017043	ENSGT00940000156171.g	ENSGT00940000154950.y.a.d	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a	ENSGT00940000178904	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT00950000182907.a.b.b.a	ENSGT00390000004643	ENSGT00940000167108	ENSGT00940000165650	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00390000005708	ENSGT00950000182917.a.a.a.b	ENSGT00940000157887	ENSGT00390000008798.c	ENSGT00940000155140
Climbing perch	MODERN SPECIES		ENSATEG00000013177	znf330 (ENSATEG00000013192)	rnf150a (ENSATEG00000013265)	ENSATEG00000013284	TBC1D9 (ENSATEG00000013303)	ucp1 (ENSATEG00000013384)	elmod2 (ENSATEG00000013413)	ENSATEG00000026142	zgc:154142 (ENSATEG00000013459)	ENSATEG00000013545	FAM13A (ENSATEG00000013904)	herc3 (ENSATEG00000013999)	ppm1kb (ENSATEG00000014062)	abcg2d (ENSATEG00000014075)	pkd2 (ENSATEG00000014100)	g3bp2a (ENSATEG00000014140) ##22	uso1 (ENSATEG00000014231)	coro2aa (ENSATEG00000027483)	anp32b (ENSATEG00000014479)	TRMO (ENSATEG00000014670)	ENSATEG00000014682	ENSATEG00000029844	sh3gl2a (ENSATEG00000014713)	CNTLN (ENSATEG00000014751)	bnc2 (ENSATEG00000014821)	ENSATEG00000014908	SNAPC3 (ENSATEG00000014933)	TTC39B (ENSATEG00000014953)	ENSATEG00000015046	PLA2G12A (ENSATEG00000015055)	CASP6 (ENSATEG00000015084)
Siamese fighting fish	MODERN SPECIES		ENSBSLG00000000065	ENSBSLG00000000066	ENSBSLG00000000067	ENSBSLG00000000068	npnta (ENSBSLG00000000069)	elmod2 (ENSBSLG00000000070)	ENSBSLG00000000071	zgc:154142 (ENSBSLG00000000072)	ENSBSLG00000000073	FAM13A (ENSBSLG00000000074)	ENSBSLG00000000075	herc3 (ENSBSLG00000000076)	ppm1kb (ENSBSLG00000000077)	abcg2d (ENSBSLG00000000078)	pkd2 (ENSBSLG00000000079)	g3bp2a (ENSBSLG00000000080) ##22	uso1 (ENSBSLG00000000081)	cyp2u1 (ENSBSLG00000000082)	ENSBSLG00000000083	lef1 (ENSBSLG00000000084)	MCUB (ENSBSLG00000000085)	ENSBSLG00000000086	ENSBSLG00000000087	ENSBSLG00000000088	ENSBSLG00000000089	ENSBSLG00000000090	ENSBSLG00000000091	ENSBSLG00000000092	ENSBSLG00000000093	pla2g12a (ENSBSLG00000000094)	TTC39B (ENSBSLG00000000186)
Eupercaria	ANCESTRAL SPECIES	2	ENSGT00490000044733	ENSGT00390000017043	ENSGT00940000156171.g	ENSGT00940000154950.y.a.d	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00940000153216.a.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT01010000228726	ENSGT00950000182907.a.b.b.a	ENSGT00960000190222	ENSGT00390000004643	ENSGT00940000167108	ENSGT00940000165650	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00940000153942.a.e.a	ENSGT00390000005708	ENSGT00950000182917.a.a.a.b
Tetraodontidae	ANCESTRAL SPECIES	16	ENSGT00940000157587.k	ENSGT00490000044733	ENSGT00390000016264.b	ENSGT00390000017043	ENSGT00940000156171.g	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT00950000182907.a.b.b.a	ENSGT00910000146604	ENSGT00390000004643	ENSGT00940000167108	ENSGT00940000165650	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00390000005708	ENSGT00950000182917.a.a.a.b	ENSGT00940000157887	ENSGT00390000008798.c
Fugu	MODERN SPECIES	8	gab1 (ENSTRUG00000013968)	INPP4B (ENSTRUG00000013776)	il15 (ENSTRUG00000013746)	znf330 (ENSTRUG00000013678)	rnf150a (ENSTRUG00000013568)	TBC1D9 (ENSTRUG00000013201)	ucp1 (ENSTRUG00000013144)	elmod2 (ENSTRUG00000013048)	ENSTRUG00000025371	zgc:154142 (ENSTRUG00000025726)	FAM13A (ENSTRUG00000012811)	herc3 (ENSTRUG00000012338)	ppm1kb (ENSTRUG00000012257)	abcg2d (ENSTRUG00000011817)	pkd2 (ENSTRUG00000011563)	g3bp2a (ENSTRUG00000011405) ##22	uso1 (ENSTRUG00000011069)	coro2aa (ENSTRUG00000010885)	anp32b (ENSTRUG00000010757)	trmo (ENSTRUG00000010684)	ENSTRUG00000020831	ENSTRUG00000010676	sh3gl2a (ENSTRUG00000010559)	CNTLN (ENSTRUG00000010460)	bnc2 (ENSTRUG00000022444)	PSIP1 (ENSTRUG00000024353)	snapc3 (ENSTRUG00000009904)	TTC39B (ENSTRUG00000009393)	dnajb14 (ENSTRUG00000009175)	pla2g12a (ENSTRUG00000025166)	casp6a (ENSTRUG00000009005)
Tetraodon	MODERN SPECIES	10	ENSTNIG00000000036	znf330 (ENSTNIG00000006841)	rnf150a (ENSTNIG00000006840)	TBC1D9 (ENSTNIG00000006839)	ucp1 (ENSTNIG00000006838)	elmod2 (ENSTNIG00000006837)	ENSTNIG00000006836	ENSTNIG00000006887	ENSTNIG00000011050	ENSTNIG00000000341	FAM13A (ENSTNIG00000011049)	herc3 (ENSTNIG00000011048)	ppm1kb (ENSTNIG00000011047)	abcg2d (ENSTNIG00000011046)	pkd2 (ENSTNIG00000011045)	g3bp2a (ENSTNIG00000011044) ##22	uso1 (ENSTNIG00000011043)	coro2aa (ENSTNIG00000011042)	anp32b (ENSTNIG00000011041)	ENSTNIG00000011040	trmo (ENSTNIG00000011039)	ENSTNIG00000011038	sh3gl2a (ENSTNIG00000011037)	ENSTNIG00000011036	ENSTNIG00000000563	psip1a (ENSTNIG00000018015)	snapc3 (ENSTNIG00000018016)	TTC39B (ENSTNIG00000018017)	dnajb14 (ENSTNIG00000018018)	pla2g12a (ENSTNIG00000018019)	casp6a (ENSTNIG00000018020)
Eupecaria_A	ANCESTRAL SPECIES	3	ENSGT00490000044733	ENSGT00390000017043	ENSGT00940000156171.g	ENSGT00940000154950.y.a.d	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00940000153216.a.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT01010000228726	ENSGT00950000182907.a.b.b.a	ENSGT00960000190222	ENSGT00390000004643	ENSGT00940000167108	ENSGT00940000165650	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00940000153942.a.e.a	ENSGT00390000005708	ENSGT00950000182917.a.a.a.b
Eupecaria_B	ANCESTRAL SPECIES	1	ENSGT00490000044733	ENSGT00390000017043	ENSGT00940000156171.g	ENSGT00940000154950.y.a.d	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00940000153216.a.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT01010000228726	ENSGT00950000182907.a.b.b.a	ENSGT00960000190222	ENSGT00390000004643	ENSGT00940000167108	ENSGT00940000165650	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00940000153942.a.e.a	ENSGT00390000005708	ENSGT00950000182917.a.a.a.b
Eupecaria_C	ANCESTRAL SPECIES	14	ENSGT00490000044733	ENSGT00390000017043	ENSGT00940000156171.g	ENSGT00940000154950.y.a.d	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00940000153216.a.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT00950000182907.a.b.b.a	ENSGT00960000190222	ENSGT00390000004643	ENSGT00940000167108	ENSGT00940000165650	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00940000153942.a.e.a	ENSGT00390000005708	ENSGT00950000182917.a.a.a.b	ENSGT00940000157887
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	13	ENSGT00490000044733	ENSGT00390000017043	ENSGT00940000156171.g	ENSGT00940000154950.y.a.d	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00940000153216.a.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT00950000182907.a.b.b.a	ENSGT00960000190222	ENSGT00390000004643	ENSGT00940000167108	ENSGT00940000165650	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00940000153942.a.e.a	ENSGT00390000005708	ENSGT00950000182917.a.a.a.b	ENSGT00940000157887
European seabass	MODERN SPECIES	20	ENSDLAG00005028497	znf330 (ENSDLAG00005015792)	rnf150a (ENSDLAG00005028800)	ENSDLAG00005032230	TBC1D9 (ENSDLAG00005013887)	ucp1 (ENSDLAG00005013841)	elmod2 (ENSDLAG00005035009)	ENSDLAG00005028531	zgc:154142 (ENSDLAG00005013791)	ENSDLAG00005013770	FAM13A (ENSDLAG00005013386)	herc3 (ENSDLAG00005015150)	ppm1kb (ENSDLAG00005028505)	abcg2d (ENSDLAG00005013587)	pkd2 (ENSDLAG00005012936)	g3bp2a (ENSDLAG00005012829) ##22	uso1 (ENSDLAG00005010954)	coro2aa (ENSDLAG00005010461)	anp32b (ENSDLAG00005010361)	TRMO (ENSDLAG00005010342)	ENSDLAG00005010320	ENSDLAG00005010314	sh3gl2a (ENSDLAG00005030726)	CNTLN (ENSDLAG00005029895)	bnc2 (ENSDLAG00005010217)	ENSDLAG00005030701	SNAPC3 (ENSDLAG00005010205)	TTC39B (ENSDLAG00005009905)	ENSDLAG00005009883	PLA2G12A (ENSDLAG00005009873)	ENSDLAG00005009860
Large yellow croaker	MODERN SPECIES	481	ENSLCRG00005009109	ENSLCRG00005009106	znf330 (ENSLCRG00005009105)	rnf150a (ENSLCRG00005009104)	ENSLCRG00005009103	TBC1D9 (ENSLCRG00005008729)	ucp1 (ENSLCRG00005008719)	ENSLCRG00005008716	ENSLCRG00005008713	zgc:154142 (ENSLCRG00005008711)	FAM13A (ENSLCRG00005008256)	herc3 (ENSLCRG00005008121)	ppm1kb (ENSLCRG00005008114)	abcg2d (ENSLCRG00005007880)	pkd2 (ENSLCRG00005007737)	g3bp2a (ENSLCRG00005007726) ##22	uso1 (ENSLCRG00005007454)	coro2aa (ENSLCRG00005007439)	anp32b (ENSLCRG00005007400)	ENSLCRG00005007398	trmo (ENSLCRG00005007396)	ENSLCRG00005007395	ENSLCRG00005007393	sh3gl2a (ENSLCRG00005006998)	CNTLN (ENSLCRG00005006986)	bnc2 (ENSLCRG00005006971)	ENSLCRG00005006967	ENSLCRG00005006966	snapc3 (ENSLCRG00005006965)	ENSLCRG00005006962	TTC39B (ENSLCRG00005006531)
Gilthead seabream	MODERN SPECIES		gab1 (ENSSAUG00010008355)	INPP4B (ENSSAUG00010008419)	ENSSAUG00010009529	znf330 (ENSSAUG00010009530)	rnf150a (ENSSAUG00010009531)	TBC1D9 (ENSSAUG00010009612)	ucp1 (ENSSAUG00010012861)	elmod2 (ENSSAUG00010012864)	ENSSAUG00010012865	zgc:154142 (ENSSAUG00010012868)	FAM13A (ENSSAUG00010012875)	herc3 (ENSSAUG00010013704)	ppm1kb (ENSSAUG00010013751)	abcg2d (ENSSAUG00010013767)	pkd2 (ENSSAUG00010015629)	g3bp2a (ENSSAUG00010016487) ##22	uso1 (ENSSAUG00010016521)	coro2aa (ENSSAUG00010016955)	anp32b (ENSSAUG00010016959)	trmo (ENSSAUG00010016964)	ENSSAUG00010016969	ENSSAUG00010016970	sh3gl2a (ENSSAUG00010016977)	CNTLN (ENSSAUG00010016997)	bnc2 (ENSSAUG00010017001)	PSIP1 (ENSSAUG00010017014)	snapc3 (ENSSAUG00010017016)	TTC39B (ENSSAUG00010017034)	dnajb14 (ENSSAUG00010017579)	PLA2G12A (ENSSAUG00010017581)	CASP6 (ENSSAUG00010017589)
Perciformes	ANCESTRAL SPECIES	2	ENSGT00940000157587.k	ENSGT00490000044733	ENSGT00390000017043	ENSGT00940000156171.g	ENSGT00940000154950.y.a.d	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT01010000228726	ENSGT00950000182907.a.b.b.a	ENSGT00910000146604	ENSGT00390000004643	ENSGT00940000167108	ENSGT00940000165650	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00940000153942.a.e.a	ENSGT00390000005708	ENSGT00950000182917.a.a.a.b
Cottioidei	ANCESTRAL SPECIES	3	ENSGT00940000157587.k	ENSGT00490000044733	ENSGT00390000017043	ENSGT00940000156171.g	ENSGT00940000154950.y.a.d	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT01010000228726	ENSGT00950000182907.a.b.b.a	ENSGT00910000146604	ENSGT00390000004643	ENSGT00940000167108	ENSGT00940000165650	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00390000005708	ENSGT00950000182917.a.a.a.b	ENSGT00940000157887
Lumpfish	MODERN SPECIES		INPP4B (ENSCLMG00005003749)	ENSCLMG00005003737	znf330 (ENSCLMG00005003736)	rnf150a (ENSCLMG00005003709)	ENSCLMG00005003706	TBC1D9 (ENSCLMG00005002677)	ucp1 (ENSCLMG00005002673)	elmod2 (ENSCLMG00005002671)	ENSCLMG00005002669	zgc:154142 (ENSCLMG00005002668)	FAM13A (ENSCLMG00005002581)	herc3 (ENSCLMG00005002528)	ppm1kb (ENSCLMG00005002520)	abcg2d (ENSCLMG00005002135)	pkd2 (ENSCLMG00005001784)	g3bp2a (ENSCLMG00005001745) ##22	uso1 (ENSCLMG00005000204)	coro2aa (ENSCLMG00005012080)	ENSCLMG00005012077	anp32b (ENSCLMG00005012076)	trmo (ENSCLMG00005012075)	ENSCLMG00005012074	ENSCLMG00005012073	sh3gl2a (ENSCLMG00005012072)	ENSCLMG00005012070	snapc3 (ENSCLMG00005012069)	TTC39B (ENSCLMG00005012068)	dnajb14 (ENSCLMG00005012067)	pla2g12a (ENSCLMG00005012065)	casp6a (ENSCLMG00005012064)	MCUB (ENSCLMG00005012063)
Stickleback	MODERN SPECIES	4	USP38 (ENSGACG00000017248)	gab1 (ENSGACG00000017250)	INPP4B (ENSGACG00000017255)	il-15 (ENSGACG00000017271)	znf330 (ENSGACG00000017274)	rnf150a (ENSGACG00000017275)	TBC1D9 (ENSGACG00000017277)	ucp1 (ENSGACG00000017283)	elmod2 (ENSGACG00000017291)	ENSGACG00000017299	FAM13A (ENSGACG00000017308)	herc3 (ENSGACG00000017317)	ppm1kb (ENSGACG00000017322)	abcg2d (ENSGACG00000017328)	pkd2 (ENSGACG00000017335)	g3bp2a (ENSGACG00000017342) ##22	uso1 (ENSGACG00000017347)	coro2aa (ENSGACG00000017366)	anp32b (ENSGACG00000017371)	ENSGACG00000017373	ENSGACG00000017374	trmo (ENSGACG00000017375)	ENSGACG00000017382	ENSGACG00000017385	ENSGACG00000017386	sh3gl2a (ENSGACG00000017387)	CNTLN (ENSGACG00000017390)	bnc2 (ENSGACG00000017398)	PSIP1 (ENSGACG00000017401)	snapc3 (ENSGACG00000017405)	TTC39B (ENSGACG00000017412)
Perciformes_a	ANCESTRAL SPECIES		ENSGT00490000044733	ENSGT00390000017043	ENSGT00940000156171.g	ENSGT00940000154950.y.a.d	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT01030000234528.A.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT01010000228726	ENSGT00950000182907.a.b.b.a	ENSGT00390000004643	ENSGT00940000167108	ENSGT00940000165650	ENSGT00940000160529	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00940000153942.a.e.a	ENSGT00390000005708	ENSGT00950000182917.a.a.a.b	ENSGT00940000157887	ENSGT00390000008798.c
Channel bull blenny	MODERN SPECIES		gab1 (ENSCGOG00000003346)	INPP4B (ENSCGOG00000003100)	ENSCGOG00000003086	znf330 (ENSCGOG00000002829)	rnf150a (ENSCGOG00000002796)	TBC1D9 (ENSCGOG00000001526)	ucp1 (ENSCGOG00000001414)	elmod2 (ENSCGOG00000001393)	ENSCGOG00000001391	ENSCGOG00000001389	FAM13A (ENSCGOG00000001257)	herc3 (ENSCGOG00000001152)	ppm1kb (ENSCGOG00000001142)	abcg2d (ENSCGOG00000001141)	pkd2 (ENSCGOG00000001077)	g3bp2a (ENSCGOG00000000973) ##22	uso1 (ENSCGOG00000000358)	coro2aa (ENSCGOG00000000250)	anp32b (ENSCGOG00000000241)	trmo (ENSCGOG00000000228)	ENSCGOG00000000222	ENSCGOG00000000218	SH3GL2 (ENSCGOG00000000142)	bnc2 (ENSCGOG00000014160)	ENSCGOG00000014156	ENSCGOG00000014151	snapc3 (ENSCGOG00000014150)	TTC39B (ENSCGOG00000013691)	dnajb14 (ENSCGOG00000013623)	pla2g12a (ENSCGOG00000013622)	casp6a (ENSCGOG00000013620)
Pike perch	MODERN SPECIES	45	ENSSLUG00000006641	znf330 (ENSSLUG00000006625)	rnf150a (ENSSLUG00000006601)	aimp1a (ENSSLUG00000006579)	TBC1D9 (ENSSLUG00000006319)	ucp1 (ENSSLUG00000006284)	elmod2 (ENSSLUG00000006262)	ENSSLUG00000006256	zgc:154142 (ENSSLUG00000006186)	ENSSLUG00000006172	FAM13A (ENSSLUG00000005137)	herc3 (ENSSLUG00000004909)	ppm1kb (ENSSLUG00000004881)	abcg2d (ENSSLUG00000004870)	pkd2 (ENSSLUG00000004702)	g3bp2a (ENSSLUG00000004589) ##22	uso1 (ENSSLUG00000003949)	DNAH8 (ENSSLUG00000002909)	coro2aa (ENSSLUG00000002758)	ENSSLUG00000002746	anp32b (ENSSLUG00000002742)	trmo (ENSSLUG00000002737)	ENSSLUG00000002723	ENSSLUG00000002711	sh3gl2a (ENSSLUG00000002698)	bnc2 (ENSSLUG00000002662)	ENSSLUG00000002652	ENSSLUG00000002645	snapc3 (ENSSLUG00000002640)	TTC39B (ENSSLUG00000002628)	dnajb14 (ENSSLUG00000002624)
Ballan wrasse	MODERN SPECIES	21	znf330 (ENSLBEG00000017836)	rnf150a (ENSLBEG00000017809)	ENSLBEG00000017791	TBC1D9 (ENSLBEG00000017698)	ucp1 (ENSLBEG00000017630)	elmod2 (ENSLBEG00000017583)	ENSLBEG00000017556	zgc:154142 (ENSLBEG00000017494)	ENSLBEG00000017158	ENSLBEG00000016968	FAM13A (ENSLBEG00000016910)	herc3 (ENSLBEG00000016794)	ppm1kb (ENSLBEG00000016731)	abcg2d (ENSLBEG00000016644)	pkd2 (ENSLBEG00000016576)	g3bp2a (ENSLBEG00000016487) ##22	uso1 (ENSLBEG00000016304)	coro2aa (ENSLBEG00000016221)	anp32b (ENSLBEG00000016190)	trmo (ENSLBEG00000016166)	ENSLBEG00000016114	sh3gl2a (ENSLBEG00000015982)	CNTLN (ENSLBEG00000015865)	bnc2 (ENSLBEG00000015768)	ENSLBEG00000015700	ENSLBEG00000015662	snapc3 (ENSLBEG00000015639)	TTC39B (ENSLBEG00000015507)	dnajb14 (ENSLBEG00000015455)	pla2g12a (ENSLBEG00000015228)	CASP6 (ENSLBEG00000015108)
Tiger tail seahorse	MODERN SPECIES	518	INPP4B (ENSHCOG00000005379)	ENSHCOG00000005350	znf330 (ENSHCOG00000005340)	rnf150a (ENSHCOG00000005319)	aimp1a (ENSHCOG00000005309)	TBC1D9 (ENSHCOG00000000805)	ucp1 (ENSHCOG00000005249)	elmod2 (ENSHCOG00000005233)	ENSHCOG00000000143	zgc:154142 (ENSHCOG00000005194)	ENSHCOG00000005171	FAM13A (ENSHCOG00000005154)	ppm1kb (ENSHCOG00000005137)	abcg2d (ENSHCOG00000005110)	pkd2 (ENSHCOG00000004926)	g3bp2a (ENSHCOG00000004888) ##22	uso1 (ENSHCOG00000004829)	coro2aa (ENSHCOG00000004682)	anp32b (ENSHCOG00000004637)	trmo (ENSHCOG00000004618)	ENSHCOG00000004605	sh3gl2a (ENSHCOG00000004568)	ENSHCOG00000004546	bnc2 (ENSHCOG00000004521)	ENSHCOG00000004478	ENSHCOG00000000121	ENSHCOG00000000120	snapc3 (ENSHCOG00000004441)	TTC39B (ENSHCOG00000004429)	dnajb14 (ENSHCOG00000004415)	pla2g12a (ENSHCOG00000004405)
Pinecone sodierfish	MODERN SPECIES		ENSMMDG00005010736	znf330 (ENSMMDG00005010743)	rnf150a (ENSMMDG00005010752)	TBC1D9 (ENSMMDG00005010786)	ucp1 (ENSMMDG00005012131)	elmod2 (ENSMMDG00005012134)	ENSMMDG00005012139	zgc:154142 (ENSMMDG00005012149)	ENSMMDG00005012162	ENSMMDG00005012163	FAM13A (ENSMMDG00005012175)	herc3 (ENSMMDG00005012333)	ppm1kb (ENSMMDG00005018374)	abcg2d (ENSMMDG00005018432)	pkd2 (ENSMMDG00005020087)	g3bp2a (ENSMMDG00005020186) ##22	uso1 (ENSMMDG00005020310)	coro2aa (ENSMMDG00005021293)	anp32b (ENSMMDG00005021549)	trmo (ENSMMDG00005021554)	ENSMMDG00005021559	ENSMMDG00005021560	ENSMMDG00005021562	sh3gl2a (ENSMMDG00005021563)	CNTLN (ENSMMDG00005021565)	bnc2 (ENSMMDG00005021569)	ENSMMDG00005021570	ENSMMDG00005021572	snapc3 (ENSMMDG00005021574)	TTC39B (ENSMMDG00005021596)	dnajb14 (ENSMMDG00005022013)
Cod	MODERN SPECIES	16	TBC1D9 (ENSGMOG00000003147)	ENSGMOG00000033809	elmod2 (ENSGMOG00000003208)	ENSGMOG00000033109	zgc:154142 (ENSGMOG00000029156)	ENSGMOG00000003224	ENSGMOG00000033211	FAM13A (ENSGMOG00000003240)	herc3 (ENSGMOG00000003304)	ENSGMOG00000029936	ENSGMOG00000015868	ENSGMOG00000028662	ppm1kb (ENSGMOG00000016216)	abcg2d (ENSGMOG00000016241)	pkd2 (ENSGMOG00000016286)	g3bp2a (ENSGMOG00000016319) ##22	uso1 (ENSGMOG00000016342)	coro2aa (ENSGMOG00000016375)	anp32b (ENSGMOG00000016403)	TRMO (ENSGMOG00000016455)	ENSGMOG00000035059	ENSGMOG00000025174	sh3gl2a (ENSGMOG00000016523)	ENSGMOG00000034533	ENSGMOG00000032870	bnc2 (ENSGMOG00000027527)	PSIP1 (ENSGMOG00000017081)	SNAPC3 (ENSGMOG00000017104)	TTC39B (ENSGMOG00000017126)	ENSGMOG00000017162	PLA2G12A (ENSGMOG00000017185)
Protacanthopterygii	ANCESTRAL SPECIES	41	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00940000156416.c	ENSGT00950000183033.a.a.c.b	ENSGT00390000014563.a.a.a	ENSGT00390000013948.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000165755.c	ENSGT00940000163989.a.a	ENSGT00940000163989.a.b.r	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT00950000182907.a.b.b.a	ENSGT00390000004643	ENSGT00400000022377	ENSGT00940000167108	ENSGT00940000165650	ENSGT00940000154737.d	ENSGT00440000034932	ENSGT00390000005844.a.b.p	ENSGT00940000154706.rb.b	ENSGT00390000005708	ENSGT00950000182917.a.a.a.b	ENSGT00940000157887	ENSGT00390000008798.c
Salmoninae	ANCESTRAL SPECIES	112	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a.kc.b	ENSGT00950000183033.a.a.c.b	ENSGT00950000183033.a.b.a.kc.a.a.a	ENSGT00940000158189	ENSGT00940000165755.c.a.b.b	ENSGT00940000163989.a.a.w.b	ENSGT00940000163989.a.b.r	ENSGT00940000156633.d.a.d	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT00950000182907.a.b.b.a.j.b	ENSGT00390000004643	ENSGT00950000182907.a.b.b.a.j.a.b	ENSGT00940000167108	ENSGT00940000165650	ENSGT00940000154737.d.o.a.a	ENSGT00440000034932.b	ENSGT00390000005844.a.b.p	ENSGT00940000154706.rb.b.a.a	ENSGT00390000005708.l	ENSGT00950000182917.a.a.a.b	ENSGT00940000157887.q	ENSGT00390000008798.c.i
Huchen	DUPLICATION
Huchen	DUPLICATION
Huchen	MODERN SPECIES	1420											ENSHHUG00000047343	ENSHHUG00000047327	ppm1kb (ENSHHUG00000047323)	abcg2d (ENSHHUG00000047280)	pkd2 (ENSHHUG00000047240)	g3bp2a (ENSHHUG00000047234) ##22	g3bp2a (ENSHHUG00000047231) ##22	uso1 (ENSHHUG00000047200)	coro2aa (ENSHHUG00000047132)	anp32b (ENSHHUG00000047076)	anp32b (ENSHHUG00000047068)	trmo (ENSHHUG00000047052)	ENSHHUG00000047039	ENSHHUG00000047038	ENSHHUG00000046947
Huchen	MODERN SPECIES	1420										ENSHHUG00000047343	ENSHHUG00000047327	ppm1kb (ENSHHUG00000047323)	abcg2d (ENSHHUG00000047280)	pkd2 (ENSHHUG00000047240)	g3bp2a (ENSHHUG00000047234) ##22	g3bp2a (ENSHHUG00000047231) ##22	uso1 (ENSHHUG00000047200)	coro2aa (ENSHHUG00000047132)	anp32b (ENSHHUG00000047076)	anp32b (ENSHHUG00000047068)	trmo (ENSHHUG00000047052)	ENSHHUG00000047039	ENSHHUG00000047038	ENSHHUG00000046947
Huchen	MODERN SPECIES	521	ucp1 (ENSHHUG00000029430)	elmod2 (ENSHHUG00000029435)	ENSHHUG00000029440	zgc:154142 (ENSHHUG00000029443)	ENSHHUG00000029541	ENSHHUG00000029545	FAM13A (ENSHHUG00000029551)	herc3 (ENSHHUG00000029608)	ENSHHUG00000029615	ENSHHUG00000029634	ENSHHUG00000029640	ppm1kb (ENSHHUG00000029644)	ENSHHUG00000029650	abcg2d (ENSHHUG00000029658)	pkd2 (ENSHHUG00000029783)	g3bp2a (ENSHHUG00000029837) ##22	uso1 (ENSHHUG00000029875)	coro2aa (ENSHHUG00000029965)	trmo (ENSHHUG00000030062)	anp32b (ENSHHUG00000030074)	ENSHHUG00000030147	ENSHHUG00000030192	ENSHHUG00000030194
Salmoninae_a	ANCESTRAL SPECIES	88	ENSGT00940000157878	ENSGT00940000160382	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a.kc.b	ENSGT00940000158189.p.a	ENSGT00940000165755.c.a.b.a	ENSGT00940000165755.c.a.a	ENSGT00940000163989.a.a.w.b	ENSGT00940000165755.c.b.a	ENSGT00940000163989.a.b.r	ENSGT00940000156633.d.a.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b.i	ENSGT00940000155598.a	ENSGT00950000182907.a.b.b.a.j.b	ENSGT00390000004643	ENSGT00950000182907.a.b.b.a.j.a.b.b	ENSGT00950000182907.a.b.b.a.j.a.a.b	ENSGT00390000005708.k	ENSGT00950000182917.a.a.a.b	ENSGT00940000157887.q	ENSGT00390000008798.c.i	ENSGT00940000157887.r	ENSGT00390000008798.c.j.b.a	ENSGT00940000155140.hb	ENSGT00940000158059.g.a.a	ENSGT00940000159660.j
Salmo	DUPLICATION
Salmo	ANCESTRAL SPECIES	86	ENSGT00940000165852.f.b	ENSGT00940000178396.d.b	ENSGT00390000017043.b.b	ENSGT00940000156171.g.e	ENSGT00940000157878.h	ENSGT00940000160382.g	ENSGT00940000156589.o.b	ENSGT00570000079168.b.b.b.w.b	ENSGT01030000234528.A.a.a.j	ENSGT00950000183033.a.b.a.kc.a.b	ENSGT00940000158189.p.b	ENSGT00940000165755.c.a.b.b	ENSGT00940000163989.a.b.q.b	ENSGT00940000166376.f	ENSGT00940000159025.e	ENSGT00390000011365.b.q ##22	ENSGT00390000017018.b.i.a
Atlantic salmon	MODERN SPECIES	23	ENSSSAG00000111141	zn330 (ENSSSAG00000000376)	ENSSSAG00000121513	TBC1D9 (ENSSSAG00000003961)	ucp1 (ENSSSAG00000083875)	ENSSSAG00000083598	elmod2 (ENSSSAG00000077042)	zgc:154142 (ENSSSAG00000002088)	FAM13A (ENSSSAG00000076970)	ENSSSAG00000000632	herc3 (ENSSSAG00000008629)	ENSSSAG00000000595	ppm1kb (ENSSSAG00000000413)	abcg2d (ENSSSAG00000002074)	pkd2 (ENSSSAG00000000695)	g3bp2a (ENSSSAG00000000811) ##22	uso1 (ENSSSAG00000001077)	coro2aa (ENSSSAG00000077259)	ENSSSAG00000113933	anp32b (ENSSSAG00000082362)	ENSSSAG00000001985	ENSSSAG00000100295	ENSSSAG00000002019	anp32b (ENSSSAG00000091534)	ENSSSAG00000002040	ENSSSAG00000100721	ENSSSAG00000043929	CNTLN (ENSSSAG00000108771)	ENSSSAG00000008604	bnc2 (ENSSSAG00000121119)	psip1 (ENSSSAG00000106074)
River trout	MODERN SPECIES	33	znf330 (ENSSTUG00000000183)	rnf150a (ENSSTUG00000000176)	TBC1D9 (ENSSTUG00000000158)	ucp1 (ENSSTUG00000000119)	elmod2 (ENSSTUG00000000066)	ENSSTUG00000008681	zgc:154142 (ENSSTUG00000008638)	FAM13A (ENSSTUG00000008228)	herc3 (ENSSTUG00000007826)	ENSSTUG00000007775	ENSSTUG00000007765	ENSSTUG00000007727	ENSSTUG00000007709	abcg2d (ENSSTUG00000005673)	pkd2 (ENSSTUG00000005423)	g3bp2a (ENSSTUG00000005297) ##22	uso1 (ENSSTUG00000003707)	coro2aa (ENSSTUG00000003264)	trmo (ENSSTUG00000003220)	anp32b (ENSSTUG00000003117)	anp32b (ENSSTUG00000002994)	ENSSTUG00000002938	ENSSTUG00000002925	ENSSTUG00000002834	bnc2 (ENSSTUG00000002647)	PSIP1 (ENSSTUG00000002542)	snapc3 (ENSSTUG00000002519)	TTC39B (ENSSTUG00000002111)	DNAJB14 (ENSSTUG00000002053)	pla2g12a (ENSSTUG00000002043)	CASP6 (ENSSTUG00000002034)
Salmo	ANCESTRAL SPECIES	80	ENSGT00940000178396.c.a	ENSGT00390000017043.a	ENSGT00940000156171.g.f	ENSGT00940000157878.g	ENSGT00940000160382.h	ENSGT00940000156589.o.a	ENSGT00570000079168.b.b.b.w.a	ENSGT01030000234528.A.a.a.i	ENSGT00950000183033.a.b.a.kc.b	ENSGT00940000158189.p.a	ENSGT00940000165755.c.a.b.a	ENSGT00940000163989.a.b.r	ENSGT00940000156633.d.a.d.a	ENSGT00940000166376.e	ENSGT00940000159025.f	ENSGT00390000011365.b.r ##22	ENSGT00390000017018.b.i.b	ENSGT00940000155598.a	ENSGT00950000182907.a.b.b.a.j.b.b	ENSGT00390000004643.g	ENSGT00950000182907.a.b.b.a.j.a.b.a	ENSGT00950000182907.a.b.b.a.i	ENSGT00390000004643.h	ENSGT00950000182907.a.b.b.a.j.a.b.b	ENSGT00950000182907.a.b.b.a.j.a.a.b	ENSGT00950000182907.a.b.b.a.j.b.a.b	ENSGT00940000167108	ENSGT00940000165650.e	ENSGT00940000154737.d.o.a.a	ENSGT00440000034932.a	ENSGT00390000005844.a.b.o
Atlantic salmon	MODERN SPECIES	27	elmod2 (ENSSSAG00000084531)	elmod2 (ENSSSAG00000096703)	TBC1D9 (ENSSSAG00000077024)	ENSSSAG00000077036	ENSSSAG00000122138	zgc:154142 (ENSSSAG00000076957)	FAM13A (ENSSSAG00000043764)	herc3 (ENSSSAG00000043365)	ENSSSAG00000043265	ENSSSAG00000043244	ENSSSAG00000043072	PPM1K (ENSSSAG00000043056)	abcg2 (ENSSSAG00000042683)	pkd2 (ENSSSAG00000003483)	ENSSSAG00000102078	g3bp2a (ENSSSAG00000041664) ##22	uso1 (ENSSSAG00000009584)	coro2aa (ENSSSAG00000041610)	ENSSSAG00000085558	anp32b (ENSSSAG00000001972)	TRMO (ENSSSAG00000115350)	ENSSSAG00000041537	ENSSSAG00000041497	anp32b (ENSSSAG00000095032)	ENSSSAG00000041481	ENSSSAG00000090165	ENSSSAG00000106210	ENSSSAG00000104844	ENSSSAG00000105824	ENSSSAG00000118103	ENSSSAG00000093857
River trout	MODERN SPECIES	2	TBC1D9 (ENSSTUG00000015340)	ucp1 (ENSSTUG00000015610)	elmod2 (ENSSTUG00000015623)	ENSSTUG00000015636	zgc:154142 (ENSSTUG00000015648)	FAM13A (ENSSTUG00000015769)	herc3 (ENSSTUG00000016572)	ENSSTUG00000016857	ENSSTUG00000016998	ENSSTUG00000017029	ENSSTUG00000017050	ENSSTUG00000017056	ppm1kb (ENSSTUG00000017063)	abcg2d (ENSSTUG00000017117)	pkd2 (ENSSTUG00000018458)	g3bp2a (ENSSTUG00000018947) ##22	uso1 (ENSSTUG00000019076)	coro2aa (ENSSTUG00000020554)	anp32b (ENSSTUG00000020782)	trmo (ENSSTUG00000020806)	anp32b (ENSSTUG00000020825)	anp32b (ENSSTUG00000020862)	anp32b (ENSSTUG00000020900)	ENSSTUG00000020909	ENSSTUG00000020941	ENSSTUG00000020965	bnc2 (ENSSTUG00000021084)	ENSSTUG00000021100	ENSSTUG00000021103	psip1a (ENSSTUG00000021111)	snapc3 (ENSSTUG00000021125)
Oncorhynchus	ANCESTRAL SPECIES	6	ENSGT00940000156171.g.h	ENSGT00940000157878.j.b	ENSGT00940000160382.j	ENSGT00940000156589	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a.kc.a.a.a	ENSGT00940000158189.p.a	ENSGT00940000165755.c.a.a	ENSGT00940000163989.a.a.w.b	ENSGT00940000165755.c.b.b	ENSGT00940000163989.a.b.r.e.a	ENSGT00940000156633.d.a.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b ##22	ENSGT00390000017018.b.i	ENSGT00940000155598.a	ENSGT00950000182907.a.b.b.a.j.b.c.a	ENSGT00390000004643	ENSGT00950000182907.a.b.b.a.j.a.b.b	ENSGT00950000182907.a.b.b.a.j.a.a.a	ENSGT00950000182907.a.b.b.a.j.a.a.b	ENSGT00950000182907.a.b.b.a.j.b.d	ENSGT00940000167108	ENSGT00940000165650	ENSGT00940000154737.d.p.d	ENSGT00440000034932.a	ENSGT00390000005844.a.b.p	ENSGT00940000154706.rb.b.a.a	ENSGT00390000005708.l
Oncorhynchus_a	ANCESTRAL SPECIES	412															ENSGT00940000159025.i	ENSGT00390000011365.b ##22	ENSGT00390000017018.b.j
Coho salmon	DUPLICATION
Coho salmon	MODERN SPECIES	583															ENSOKIG00005034834	g3bp2a (ENSOKIG00005034863) ##22	uso1 (ENSOKIG00005035081)
Coho salmon	MODERN SPECIES	27	rnf150a (ENSOKIG00005002078)	TBC1D9 (ENSOKIG00005001917)	ENSOKIG00005001818	elmod2 (ENSOKIG00005001808)	ENSOKIG00005001803	zgc:154142 (ENSOKIG00005001778)	FAM13A (ENSOKIG00005046581)	herc3 (ENSOKIG00005046454)	ENSOKIG00005046441	ENSOKIG00005046430	ENSOKIG00005046417	ppm1kb (ENSOKIG00005046397)	abcg2d (ENSOKIG00005044300)	pkd2 (ENSOKIG00005043428)	ENSOKIG00005043388	g3bp2a (ENSOKIG00005043329) ##22	USO1 (ENSOKIG00005042617)	coro2aa (ENSOKIG00005042273)	TRMO (ENSOKIG00005042220)	ENSOKIG00005042011	ENSOKIG00005041937	ENSOKIG00005041917	anp32b (ENSOKIG00005041745)	ENSOKIG00005041709	ENSOKIG00005041685	ENSOKIG00005041658	ENSOKIG00005041588	ENSOKIG00005041547	NPNT (ENSOKIG00005041301)	ENSOKIG00005041143	ENSOKIG00005041078
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	1	zgc:154142 (ENSOMYG00000006124)	ENSOMYG00000005803	FAM13A (ENSOMYG00000005777)	herc3 (ENSOMYG00000005644)	ENSOMYG00000074155	ENSOMYG00000065449	ENSOMYG00000038900	ENSOMYG00000061867	ENSOMYG00000039043	ENSOMYG00000005254	ENSOMYG00000063817	ENSOMYG00000038828	ppm1kb (ENSOMYG00000047956)	abcg2d (ENSOMYG00000008784)	pkd2 (ENSOMYG00000007529)	g3bp2a (ENSOMYG00000008174) ##22	uso1 (ENSOMYG00000008487)	coro2aa (ENSOMYG00000038740)	anp32b (ENSOMYG00000075016)	TRMO (ENSOMYG00000038683)	ENSOMYG00000050405	ENSOMYG00000060967	ENSOMYG00000055465	ENSOMYG00000062232	ENSOMYG00000009188	CNTLN (ENSOMYG00000009312)	bnc2 (ENSOMYG00000009358)	PSIP1 (ENSOMYG00000009399)	SNAPC3 (ENSOMYG00000038620)	TTC39B (ENSOMYG00000038393)	ENSOMYG00000074759
Rainbow trout	MODERN SPECIES	10	zgc:154142 (ENSOMYG00000007115)	ENSOMYG00000007078	ENSOMYG00000058519	FAM13A (ENSOMYG00000039489)	herc3 (ENSOMYG00000039165)	ENSOMYG00000039547	ENSOMYG00000039576	ENSOMYG00000038978	ENSOMYG00000039024	ENSOMYG00000039517	ENSOMYG00000074276	ppm1kb (ENSOMYG00000038804)	abcg2d (ENSOMYG00000006734)	ENSOMYG00000066477	pkd2 (ENSOMYG00000055683)	ENSOMYG00000070996 ##22	ENSOMYG00000008285	ENSOMYG00000076495	ENSOMYG00000065015	ENSOMYG00000061811	ENSOMYG00000053837	ENSOMYG00000053186	ENSOMYG00000049550	ENSOMYG00000064212	ENSOMYG00000064067	ENSOMYG00000031846	ENSOMYG00000008879	ENSOMYG00000074592	ENSOMYG00000007291	ENSOMYG00000074420	ENSOMYG00000008235
Northern pike	MODERN SPECIES	24	znf330 (ENSELUG00000014942)	rnf150a (ENSELUG00000014972)	TBC1D9 (ENSELUG00000015042)	ucp1 (ENSELUG00000015079)	elmod2 (ENSELUG00000015113)	ENSELUG00000015121	zgc:154142 (ENSELUG00000015172)	FAM13A (ENSELUG00000015312)	herc3 (ENSELUG00000015372)	herc56.4 (ENSELUG00000015399)	ENSELUG00000015463	ENSELUG00000026114	ppm1kb (ENSELUG00000015493)	abcg2d (ENSELUG00000015532)	pkd2 (ENSELUG00000015587)	g3bp2a (ENSELUG00000015665) ##22	uso1 (ENSELUG00000000591)	coro2aa (ENSELUG00000015856)	anp32b (ENSELUG00000016016)	trmo (ENSELUG00000016067)	ENSELUG00000016113	ENSELUG00000025618	ENSELUG00000016205	ENSELUG00000000621	bnc2 (ENSELUG00000016430)	psip1a (ENSELUG00000016502)	snapc3 (ENSELUG00000016520)	TTC39B (ENSELUG00000016592)	dnajb14 (ENSELUG00000016613)	pla2g12a (ENSELUG00000027040)	casp6a (ENSELUG00000016648)
Otomorpha	DUPLICATION
Otomorpha	DUPLICATION
Otomorpha	ANCESTRAL SPECIES	57	ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.f	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000006684	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a	ENSGT00940000160003	ENSGT00390000017004.a.a	ENSGT00950000183088.a.b.b	ENSGT00390000005218	ENSGT00390000011365.b.w.a ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT00950000182907.a.b.b.a	ENSGT00390000004643	ENSGT01060000249224	ENSGT00940000165650	ENSGT00940000157398.j	ENSGT00940000154737.d	ENSGT00950000182907.a.b.a	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00390000005708	ENSGT00950000182917.a.a.a.b
Otophysi	ANCESTRAL SPECIES	227			ENSGT00390000015948.a	ENSGT00950000183109.d.f	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a	ENSGT00940000160003	ENSGT00390000017004.a.a	ENSGT00950000183088.a.b.b	ENSGT00390000005218	ENSGT00390000011365.b.w.a ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT00950000182907.a.b.b.a	ENSGT00390000004643	ENSGT01060000249224	ENSGT00940000165650	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00390000005708	ENSGT00950000182917.a.a.a.b	ENSGT00940000157887	ENSGT00390000008798.c	ENSGT00940000155140.t
Cyprinoidei	ANCESTRAL SPECIES	147					ENSGT00390000015948.a.h	ENSGT00940000160120.i	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a.h	ENSGT00940000160003	ENSGT00390000017004.a.a	ENSGT00950000183088.a.b.b	ENSGT00390000005218	ENSGT00390000011365.b.w.a ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT00950000182907.a.b.b.a.c	ENSGT00940000179752	ENSGT00390000004643	ENSGT01060000249224.a	ENSGT00940000165650.b	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00970000198226	ENSGT00940000157358	ENSGT00940000155063.c.b	ENSGT00440000033329.b.a.a
Cyprininae	ANCESTRAL SPECIES	15	ENSGT00940000156337.d.g	ENSGT00950000183027.b.a.g	ENSGT00950000183054.a.a.a.b	ENSGT00940000158985.r.a.a	ENSGT00390000015948.a.h	ENSGT00940000160120.i	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B.k	ENSGT00940000159801.A.k	ENSGT00940000154108.b.a.a.h.a.a	ENSGT00940000160003.k	ENSGT00390000017004.a.a.w	ENSGT00950000183088.a.b.b.c	ENSGT00390000005218.u	ENSGT00390000011365.b.w.a ##22	ENSGT00390000017018.b.e	ENSGT00940000155598.a.a	ENSGT00950000182907.a.b.b.a.c	ENSGT00940000179752	ENSGT00390000004643	ENSGT01060000249224.a	ENSGT00940000165650.b	ENSGT00940000160529.e.a	ENSGT00440000034932	ENSGT00390000005844.a.b.l	ENSGT00940000154706.rb.b	ENSGT00970000198226
Cyprininae_a	ANCESTRAL SPECIES	48	ENSGT00940000156337.d.g	ENSGT00950000183027.b.a.g	ENSGT00950000183054.a.a.a.b	ENSGT00940000158985.r.a.a	ENSGT00390000015948.a.h	ENSGT00940000160120.i	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B.k	ENSGT00940000159801.A.k	ENSGT00940000154108.b.a.a.h.a.a	ENSGT00940000160003.k	ENSGT00390000017004.a.a.w	ENSGT00950000183088.a.b.b.c	ENSGT00390000005218.u	ENSGT00390000011365.b.w.a ##22	ENSGT00390000017018.b.e	ENSGT00940000155598.a.a	ENSGT00950000182907.a.b.b.a.c	ENSGT00390000004643.b	ENSGT00940000179752	ENSGT00390000004643.a	ENSGT01060000249224.a	ENSGT00400000022377	ENSGT00940000165650.b	ENSGT00940000160529.e.a	ENSGT00440000034932	ENSGT00390000005844.a.b.l	ENSGT00940000154706.rb.b.d
Golden-line barbel	MODERN SPECIES	195				pdcd4a (ENSSGRG00000016032)	MXD4 (ENSSGRG00000017061)	ndufb6 (ENSSGRG00000017062)	toporsa (ENSSGRG00000017063)	mtap (ENSSGRG00000017064)	ENSSGRG00000017066	CXXC4 (ENSSGRG00000017067)	TET2 (ENSSGRG00000017068)	ppa2 (ENSSGRG00000017069)	ENSSGRG00000017087	ARHGEF38 (ENSSGRG00000017089)	ints12 (ENSSGRG00000017090)	g3bp2a (ENSSGRG00000017096) ##22	uso1 (ENSSGRG00000017116)	coro2aa (ENSSGRG00000018385)	anp32b (ENSSGRG00000018405)	trmo (ENSSGRG00000018407)	ENSSGRG00000018409	ENSSGRG00000018411	sh3gl2a (ENSSGRG00000018412)	ENSSGRG00000018414	bnc2 (ENSSGRG00000018415)	mettl15 (ENSSGRG00000018417)	kif18a (ENSSGRG00000018418)	bdnf (ENSSGRG00000018419)	lin7c (ENSSGRG00000018421)	mybpc3 (ENSSGRG00000018487)	cars1 (ENSSGRG00000021316)
Common carp reference	MODERN SPECIES	27	myoz2b (ENSCCRG00000053110)	ENSCCRG00000014494	ENSCCRG00000032717	ENSCCRG00000073372	pdcd4a (ENSCCRG00000029452)	ENSCCRG00000049296	ndufb6 (ENSCCRG00000029430)	toporsa (ENSCCRG00000029428)	mtap (ENSCCRG00000064877)	ENSCCRG00000029426	CXXC4 (ENSCCRG00000080504)	TET2 (ENSCCRG00000032278)	ppa2 (ENSCCRG00000079658)	ARHGEF38 (ENSCCRG00000007531)	ints12 (ENSCCRG00000060317)	g3bp2a (ENSCCRG00000077865) ##22	uso1 (ENSCCRG00000080512)	coro2aa (ENSCCRG00000017420)	anp32b (ENSCCRG00000065775)	ENSCCRG00000058756	trmo (ENSCCRG00000018039)	ENSCCRG00000018046	ENSCCRG00000018048	sh3gl2a (ENSCCRG00000018054)	CNTLN (ENSCCRG00000071812)	bnc2 (ENSCCRG00000056219)	PSIP1 (ENSCCRG00000062862)	ENSCCRG00000081028	ENSCCRG00000039653	ENSCCRG00000079166	ENSCCRG00000043337
Goldfish	MODERN SPECIES	18	USP53 (ENSCARG00000021907)	myoz2b (ENSCARG00000021887)	ENSCARG00000021835	ENSCARG00000021825	pdcd4a (ENSCARG00000020525)	MXD4 (ENSCARG00000020471)	ndufb6 (ENSCARG00000020452)	ENSCARG00000020442	mtap (ENSCARG00000020223)	ENSCARG00000020196	CXXC4 (ENSCARG00000020194)	TET2 (ENSCARG00000020143)	ppa2 (ENSCARG00000020119)	ARHGEF38 (ENSCARG00000020086)	ints12 (ENSCARG00000020069)	g3bp2a (ENSCARG00000020059) ##22	uso1 (ENSCARG00000015730)	coro2aa (ENSCARG00000015502)	anp32b (ENSCARG00000015489)	trmo (ENSCARG00000015481)	ENSCARG00000015408	ENSCARG00000015387	sh3gl2a (ENSCARG00000015356)	ENSCARG00000015345	ENSCARG00000015342	ENSCARG00000015315	ENSCARG00000015295	ENSCARG00000015287	ENSCARG00000015282	STS (ENSCARG00000015218)	anos1a (ENSCARG00000015038)
Zebrafish	MODERN SPECIES		ENSDARG00000037256	ENSDARG00000116236	ENSDARG00000069998	gpank1 (ENSDARG00000053995)	pdcd4a (ENSDARG00000021702)	MXD4 (ENSDARG00000054031)	ndufb6 (ENSDARG00000037259)	toporsa (ENSDARG00000037260)	mtap (ENSDARG00000037261)	ENSDARG00000037262	CXXC4 (ENSDARG00000077817)	TET2 (ENSDARG00000076928)	ppa2 (ENSDARG00000009685)	ARHGEF38 (ENSDARG00000079377)	ints12 (ENSDARG00000091678)	g3bp2a (ENSDARG00000014790) ##22	uso1 (ENSDARG00000019581)	ENSDARG00000096665	coro2aa (ENSDARG00000005210)	anp32b (ENSDARG00000023330)	ENSDARG00000096667	trmo (ENSDARG00000037245)	ENSDARG00000096554	ENSDARG00000079266	sh3gl2a (ENSDARG00000023600)	ENSDARG00000033345	bnc2 (ENSDARG00000069989)	ENSDARG00000095189	ENSDARG00000104096	ENSDARG00000102639	pspc1 (ENSDARG00000006621)
Characiphysae	ANCESTRAL SPECIES	9			ENSGT00390000015948.a	ENSGT00950000183109.d.f	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a	ENSGT00940000160003	ENSGT00390000017004.a.a	ENSGT00950000183088.a.b.b.a	ENSGT00390000005218	ENSGT00390000011365.b.w.a ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT00950000182907.a.b.b.a	ENSGT00390000004643	ENSGT00400000022377	ENSGT01060000249224	ENSGT00940000165650	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00390000005708	ENSGT00950000182917.a.a.a.b	ENSGT00940000157887	ENSGT00390000008798.c
Characiphysae_b	ANCESTRAL SPECIES	153											ENSGT00940000154108.b.a.a	ENSGT00940000160003	ENSGT00390000017004.a.a	ENSGT00950000183088.a.b.b.a	ENSGT00390000005218	ENSGT00390000011365.b.w.a ##22	ENSGT00390000017018.b	ENSGT00940000155598.a	ENSGT00950000182907.a.b.b.a	ENSGT00390000004643	ENSGT01060000249224	ENSGT00940000165650	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00390000005708	ENSGT00950000182917.a.a.a.b	ENSGT00940000157887	ENSGT00390000008798.c	ENSGT00940000155140.t
Electric eel	MODERN SPECIES	430											TET2 (ENSEEEG00000022653)	ppa2 (ENSEEEG00000022651)	ENSEEEG00000022650	ARHGEF38 (ENSEEEG00000022649)	ints12 (ENSEEEG00000022648)	g3bp2a (ENSEEEG00000022647) ##22	uso1 (ENSEEEG00000022642)	coro2aa (ENSEEEG00000022641)	anp32b (ENSEEEG00000022640)	trmo (ENSEEEG00000022638)	ENSEEEG00000022637	ENSEEEG00000022635	sh3gl2a (ENSEEEG00000022634)	ENSEEEG00000022630
Clupeiformes	ANCESTRAL SPECIES	67	ENSGT00390000017452	ENSGT00390000015948.a	ENSGT00950000183109.d.e.a	ENSGT00940000160120	ENSGT00950000182810.B.b.a.a	ENSGT00390000006684	ENSGT00390000007535	ENSGT00530000064170.c	ENSGT00950000182991.B	ENSGT00940000159801.A	ENSGT00940000154108.b.a.a	ENSGT00940000160003	ENSGT00390000017004.a.a	ENSGT00950000183088.a.b.b	ENSGT00390000005218	ENSGT00390000011365.b.w.a ##22	ENSGT00390000017018.b	ENSGT00940000159660.j	ENSGT00940000158059.g	ENSGT00940000155140	ENSGT00390000008798.c	ENSGT00940000157887	ENSGT00950000182917.a.a.a.b	ENSGT00390000005708	ENSGT00940000154706.rb.b	ENSGT00390000005844.a.b	ENSGT00440000034932	ENSGT00940000154737.d	ENSGT00940000155598.b.n	ENSGT00940000160529	ENSGT00940000165650
Denticle herring	MODERN SPECIES	14	ENSDCDG00000014149	mogs (ENSDCDG00000014136)	pdcd4a (ENSDCDG00000012023)	ENSDCDG00000011836	MXD4 (ENSDCDG00000011828)	ENSDCDG00000011817	ndufb6 (ENSDCDG00000011811)	toporsa (ENSDCDG00000011809)	mtap (ENSDCDG00000011804)	ENSDCDG00000011797	CXXC4 (ENSDCDG00000011791)	TET2 (ENSDCDG00000011781)	ppa2 (ENSDCDG00000011763)	ARHGEF38 (ENSDCDG00000011752)	ints12 (ENSDCDG00000011750)	g3bp2a (ENSDCDG00000011741) ##22	uso1 (ENSDCDG00000011611)	lef1 (ENSDCDG00000011390)	MCUB (ENSDCDG00000011350)	casp6a (ENSDCDG00000011336)	pla2g12a (ENSDCDG00000011320)	TTC39B (ENSDCDG00000011186)	snapc3 (ENSDCDG00000011135)	PSIP1 (ENSDCDG00000011122)	bnc2 (ENSDCDG00000011112)	sh3gl2a (ENSDCDG00000010885)	ENSDCDG00000010875	trmo (ENSDCDG00000010846)	anp32b (ENSDCDG00000010827)	coro2aa (ENSDCDG00000009914)	hadh (ENSDCDG00000009873)
Atlantic herring	MODERN SPECIES	14	ENSCHAG00000027791	MXD4 (ENSCHAG00000027794)	ENSCHAG00000027797	TMEM215 (ENSCHAG00000027800)	ndufb6 (ENSCHAG00000027802)	toporsa (ENSCHAG00000027804)	mtap (ENSCHAG00000027806)	ENSCHAG00000027807	ENSCHAG00000027809	ENSCHAG00000027810	CXXC4 (ENSCHAG00000027811)	TET2 (ENSCHAG00000027812)	ppa2 (ENSCHAG00000027813)	ARHGEF38 (ENSCHAG00000027816)	ints12 (ENSCHAG00000027817)	g3bp2a (ENSCHAG00000027819) ##22	uso1 (ENSCHAG00000027828)	lef1 (ENSCHAG00000027834)	MCUB (ENSCHAG00000027836)	casp6a (ENSCHAG00000027837)	pla2g12a (ENSCHAG00000027839)	dnajb14 (ENSCHAG00000027840)	TTC39B (ENSCHAG00000027842)	snapc3 (ENSCHAG00000027847)	psip1a (ENSCHAG00000027848)	bnc2 (ENSCHAG00000027849)	CNTLN (ENSCHAG00000002484)	ENSCHAG00000002619	ENSCHAG00000002796	ENSCHAG00000002892	trmo (ENSCHAG00000003426)
Otomorpha	ANCESTRAL SPECIES	149	ENSGT00940000154108.b.a.b	ENSGT00930000150973.B.e.a	ENSGT00940000154950.y.b	ENSGT00940000164073.b	ENSGT00940000157370.a	ENSGT00940000158059.h	ENSGT00930000151042	ENSGT00950000182917.a.a.a.a	ENSGT00940000154706.rb.a	ENSGT01030000235123	ENSGT01030000235336	ENSGT01060000248998	ENSGT00940000155598.b.m.b	ENSGT00940000155951.b	ENSGT00940000155951.a	ENSGT00390000011365.b.w.b ##22	ENSGT00940000160368	ENSGT00390000013285.h	ENSGT00940000157103	ENSGT00940000157059	ENSGT00940000156074.a.a	ENSGT01030000234598.a.a.b	ENSGT00390000011553	ENSGT00940000153299.b	ENSGT00940000164913	ENSGT00560000077278.a	ENSGT00940000153993.A.i	ENSGT00900000142261	ENSGT00940000157956.o.a	ENSGT00940000160057
Otophysi	ANCESTRAL SPECIES	164	ENSGT00940000153173.a	ENSGT00940000154108.b.a.b	ENSGT00930000150973.B.e.a	ENSGT00940000154950.y.b	ENSGT00940000164073.b	ENSGT00940000157370.a	ENSGT00930000151042.w	ENSGT00950000182917.a.a.a.a	ENSGT00940000154706.rb.a	ENSGT00940000167699	ENSGT00390000005844.a.a	ENSGT00940000153942.b	ENSGT00940000155598.b.m.b	ENSGT00940000155951.b	ENSGT00940000155951.a	ENSGT00390000011365.b.w.b ##22	ENSGT00940000160368	ENSGT00390000013285.h	ENSGT00940000157103	ENSGT00940000157059	ENSGT00940000156074.a.a	ENSGT01030000234598.a.a.b	ENSGT00390000011553	ENSGT00940000153299.b	ENSGT00950000182907.a.b.a	ENSGT00940000154737.d
Characiphysae	ANCESTRAL SPECIES	160	ENSGT01100000263484.C.b.b ##24	ENSGT00940000167671	ENSGT01030000235000	ENSGT01030000234582.e.a	ENSGT00610000086191	ENSGT00940000167331.b	ENSGT00940000160057	ENSGT00940000157956.o.a	ENSGT00980000199088	ENSGT00940000153993.A.i	ENSGT00560000077278.a	ENSGT00940000164913	ENSGT00940000155598.b.n	ENSGT00940000155951.b	ENSGT00940000155951.a	ENSGT00390000011365.b.w.b ##22	ENSGT00940000160368	ENSGT00390000013285.h	ENSGT00940000157103	ENSGT00940000157059	ENSGT00940000156074.a.a	ENSGT01030000234598.a.a.b	ENSGT00390000011553	ENSGT00940000154466.bc	ENSGT00950000182907.a.b.a	ENSGT00940000154737.d.i
Characiphysae_b	ANCESTRAL SPECIES	177	ENSGT01100000263484.C.b.b ##24	ENSGT00940000167671	ENSGT01030000235000	ENSGT01030000234582.e.a	ENSGT00610000086191	ENSGT00940000167331.b	ENSGT00940000160057	ENSGT00940000157956.o.a	ENSGT00980000199088	ENSGT00940000153993.A.i	ENSGT00560000077278.a	ENSGT00940000164913	ENSGT00940000155598.b.n	ENSGT00940000155951.b.v	ENSGT00940000155951.a	ENSGT00390000011365.b.w.b ##22	ENSGT00940000160368	ENSGT00390000013285.h	ENSGT00940000157103
Characoidei	ANCESTRAL SPECIES	274							ENSGT00940000160057	ENSGT00940000157956.o.a	ENSGT00980000199088	ENSGT00940000153993.A.i	ENSGT00560000077278.a	ENSGT00940000164913	ENSGT00940000155598.b.n	ENSGT00940000155951.b.v	ENSGT00940000155951.a	ENSGT00390000011365.b.w.b ##22	ENSGT00940000160368	ENSGT00390000013285.h	ENSGT00940000157103	ENSGT00940000157059	ENSGT00940000156074.a.a
Red-bellied piranha	MODERN SPECIES	1718														ENSPNAG00000021196	ENSPNAG00000021190	g3bp2b (ENSPNAG00000021170) ##22	ENSPNAG00000021126	ENSPNAG00000021111
Mexicana tetra	MODERN SPECIES	6	ENSAMXG00000020010	eif4e2rs1 (ENSAMXG00000019996)	ENSAMXG00000031401	ephb4b (ENSAMXG00000019985)	DLG4 (ENSAMXG00000030496)	ENSAMXG00000037673	ENSAMXG00000029852	ENSAMXG00000033128	ENSAMXG00000032779	MEPCE (ENSAMXG00000033849)	ENSAMXG00000019882	zgc:158659 (ENSAMXG00000019848)	CORO2A (ENSAMXG00000019819)	tec (ENSAMXG00000019793)	ENSAMXG00000019769	g3bp2b (ENSAMXG00000004459) ##22	CDKL2 (ENSAMXG00000004449)	ENSAMXG00000004426	ENSAMXG00000004397	CORIN (ENSAMXG00000004363)	NFXL1 (ENSAMXG00000004309)	ENSAMXG00000037466	ENSAMXG00000034579	ENSAMXG00000038049	ENSAMXG00000035322	ENSAMXG00000005148	ENSAMXG00000031802	ENSAMXG00000010740	PLEKHG1 (ENSAMXG00000010782)	tcp1 (ENSAMXG00000010825)	PRSS35 (ENSAMXG00000024981)
Electric eel	MODERN SPECIES	511	ENSEEEG00000005158	ubac2 (ENSEEEG00000005160)	gpr183b (ENSEEEG00000005163)	dachc (ENSEEEG00000005165)	mzt1 (ENSEEEG00000005168)	bora (ENSEEEG00000005169)	DIS3 (ENSEEEG00000005181)	metap1d (ENSEEEG00000005216)	dlx2b (ENSEEEG00000005219)	itga6b (ENSEEEG00000005240)	ENSEEEG00000005483	eef1a1b (ENSEEEG00000005554)	ENSEEEG00000006098	ENSEEEG00000006102	ENSEEEG00000006105	g3bp2b (ENSEEEG00000006111) ##22	CDKL2 (ENSEEEG00000006115)
Channel catfish	MODERN SPECIES	6	ddx58 (ENSIPUG00000003114)	ENSIPUG00000003179	ENSIPUG00000003183	AIMP1 (ENSIPUG00000003203)	ENSIPUG00000003218	sgms2b (ENSIPUG00000003241)	cfi (ENSIPUG00000003259)	ENSIPUG00000003339	ENSIPUG00000003363	ENSIPUG00000003374	MEPCE (ENSIPUG00000003387)	zgc:158659 (ENSIPUG00000003405)	ENSIPUG00000003441	tec (ENSIPUG00000003515)	ENSIPUG00000003538	g3bp2 (ENSIPUG00000003561) ##22	ENSIPUG00000003594	ENSIPUG00000003611	CORIN (ENSIPUG00000003632)	ENSIPUG00000003676	CNGA1 (ENSIPUG00000003687)	ENSIPUG00000003703	ENSIPUG00000003719	tfr2 (ENSIPUG00000003730)	ctc1 (ENSIPUG00000003776)	HMGB2 (ENSIPUG00000003812)	ENSIPUG00000003824	ENSIPUG00000003836	ENSIPUG00000003853	eif4e2rs1 (ENSIPUG00000003906)	itchb (ENSIPUG00000003949)
Cyprinoidei	ANCESTRAL SPECIES	171				ENSGT00940000160860	ENSGT01030000234629.A	ENSGT00610000086191	ENSGT00940000167331.b	ENSGT00940000160057	ENSGT00940000157956.o.a	ENSGT00900000142261	ENSGT00940000153993.A.i	ENSGT00940000164913	ENSGT00940000155598.b.n	ENSGT00940000155951.b	ENSGT00940000155951.a	ENSGT00390000011365.b.w.b ##22	ENSGT00940000160368	ENSGT00390000013285.h	ENSGT00940000157103	ENSGT00940000157059	ENSGT00940000156074.a.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	735												ENSGT00940000153993.A.i.c.a	ENSGT00940000155598.b.n	ENSGT00940000155951.b.x.a.a	ENSGT00940000155951.a.b	ENSGT00390000011365.b.w.b.a ##22	ENSGT00940000160368	ENSGT00390000013285.h	ENSGT00940000155512.h	ENSGT00940000157103	ENSGT00940000157059	ENSGT00940000156074.a.a.b
Cyprininae_a	ANCESTRAL SPECIES	572												ENSGT00940000153993.A.i.c.a	ENSGT00940000155598.b.n	ENSGT00940000155951.b.x.a.a	ENSGT00940000155951.a.b	ENSGT00390000011365.b.w.b.a ##22	ENSGT00940000160368	ENSGT00390000013285.h	ENSGT00940000155512.h	ENSGT00940000157103	ENSGT00940000157059	ENSGT00940000156074.a.a.b
Common carp reference	MODERN SPECIES	11	pfn1 (ENSCCRG00000065450)	ENSCCRG00000064074	psmb6 (ENSCCRG00000044556)	ENSCCRG00000074993	actl6b (ENSCCRG00000011109)	ENSCCRG00000071706	eif4e2rs1 (ENSCCRG00000065091)	ephb4b (ENSCCRG00000058750)	ENSCCRG00000061617	ENSCCRG00000065258	ENSCCRG00000074182	ENSCCRG00000016846	ENSCCRG00000011271	tec (ENSCCRG00000058209)	ENSCCRG00000028570	ENSCCRG00000059118 ##22	ENSCCRG00000054677	ENSCCRG00000070530	ENSCCRG00000068001	ENSCCRG00000070630	CORIN (ENSCCRG00000019141)	ENSCCRG00000005645	CNGA1 (ENSCCRG00000005635)	ENSCCRG00000041278
Goldfish	MODERN SPECIES	42	zgc:85858 (ENSCARG00000044826)	ENSCARG00000044836	ENO3 (ENSCARG00000044870)	pfn1 (ENSCARG00000045144)	trappc1 (ENSCARG00000045162)	psmb6 (ENSCARG00000045178)	ENSCARG00000045204	actl6b (ENSCARG00000046153)	ENSCARG00000046473	ENSCARG00000046517	ENSCARG00000046525	MEPCE (ENSCARG00000046539)	ENSCARG00000046556	tec (ENSCARG00000046631)	ENSCARG00000047154	g3bp2b (ENSCARG00000047407) ##22	ENSCARG00000047510	CORIN (ENSCARG00000047657)	aimp1b (ENSCARG00000047730)	sgms2b (ENSCARG00000018166)	ENSCARG00000018179	ENSCARG00000018208	ENSCARG00000018231	ENSCARG00000018517	ENSCARG00000018527	ENSCARG00000018538	ENSCARG00000018568	ctc1 (ENSCARG00000018571)	tfr2 (ENSCARG00000018584)	ENSCARG00000018601	ENSCARG00000018621
Cyprininae	ANCESTRAL SPECIES	1241														ENSGT00940000155951.b.y	ENSGT00940000155951.a.a	ENSGT00390000011365.b.w.b.b ##22
Cyprininae_a	ANCESTRAL SPECIES	912														ENSGT00940000155951.b.y	ENSGT00940000155951.a.a	ENSGT00390000011365.b.w.b.b ##22
Common carp reference	MODERN SPECIES	49	ENSCCRG00000064331	ENSCCRG00000059668	trappc1 (ENSCCRG00000060407)	psmb6 (ENSCCRG00000040903)	ENSCCRG00000078406	ENSCCRG00000011683	ENSCCRG00000024958	eif4e2rs1 (ENSCCRG00000074656)	ephb4b (ENSCCRG00000067099)	ENSCCRG00000060917	ENSCCRG00000048682	zgc:158659 (ENSCCRG00000063854)	tec (ENSCCRG00000070107)	ENSCCRG00000060952	ENSCCRG00000082681	ENSCCRG00000027076 ##22	ENSCCRG00000027839
Goldfish	MODERN SPECIES	15	ENSCARG00000008830	ENSCARG00000008916	ENSCARG00000008941	ENSCARG00000009256	ENSCARG00000009302	ENSCARG00000009326	ENSCARG00000009344	ENSCARG00000009357	HMGB2 (ENSCARG00000009379)	ENSCARG00000009393	ENSCARG00000009412	MEPCE (ENSCARG00000009422)	zgc:158659 (ENSCARG00000009455)	tec (ENSCARG00000009608)	ENSCARG00000010992	g3bp2b (ENSCARG00000010997) ##22	ENSCARG00000011003	CNGA1 (ENSCARG00000011010)	ENSCARG00000011022	ENSCARG00000011036	si:ch73-359m17.2 (ENSCARG00000011051)	ENSCARG00000011085	ENSCARG00000011088	ENSCARG00000011090	ndrg2 (ENSCARG00000011140)	ENSCARG00000012916	zgc:55733 (ENSCARG00000012925)	ENSCARG00000012957	ENSCARG00000012963	slc12a10.3 (ENSCARG00000012973)	slc12a10.1 (ENSCARG00000013068)
Zebrafish	MODERN SPECIES	15	ENSDARG00000100939	slc10a7 (ENSDARG00000104508)	otud4 (ENSDARG00000077810)	abce1 (ENSDARG00000007216)	anapc10 (ENSDARG00000090152)	ENSDARG00000054548	rnf150b (ENSDARG00000009524)	ENSDARG00000088882	PPM1K (ENSDARG00000076011)	ENSDARG00000095911	CNGA1 (ENSDARG00000012125)	NFXL1 (ENSDARG00000070127)	CORIN (ENSDARG00000101281)	ENSDARG00000043918	ENSDARG00000015068	g3bp2b (ENSDARG00000074572) ##22	tec (ENSDARG00000098477)	ENSDARG00000095969	zgc:158659 (ENSDARG00000060597)	MEPCE (ENSDARG00000035771)	ENSDARG00000095809	DLG4 (ENSDARG00000039385)	ephb4b (ENSDARG00000027112)	eif4e2rs1 (ENSDARG00000015835)	ENSDARG00000095799	SPSB2 (ENSDARG00000088985)	actl6b (ENSDARG00000034107)	ENSDARG00000075024	psmb6 (ENSDARG00000002240)	trappc1 (ENSDARG00000039005)	ENSDARG00000087392
Clupeiformes	ANCESTRAL SPECIES	267						ENSGT00930000150973.B.e.a	ENSGT00940000154950.y.b	ENSGT00990000205111	ENSGT00940000157370.a	ENSGT00940000158059.h	ENSGT00930000151042	ENSGT00950000182917.a.a.a.a	ENSGT00940000155598.b.m.a	ENSGT00940000155951.b	ENSGT00940000155951.a	ENSGT00390000011365.b.w.b ##22	ENSGT00940000160368	ENSGT00390000013285.h	ENSGT00940000157103	ENSGT00940000157059	ENSGT00940000156074.a.a	ENSGT01030000234598.a.a.b	ENSGT00390000011553	ENSGT00940000154466.bc	ENSGT00940000164913	ENSGT00560000077278.a	ENSGT00940000153993.A.i
Atlantic herring	MODERN SPECIES	9	ENSCHAG00000007420	sgms2b (ENSCHAG00000007453)	ENSCHAG00000007461	ENSCHAG00000007475	ENSCHAG00000007625	ENSCHAG00000007650	ENSCHAG00000008213	ENSCHAG00000008284	ENSCHAG00000008280	ENSCHAG00000008237	ENSCHAG00000008302	ENSCHAG00000008321	ENSCHAG00000008509	ENSCHAG00000008610	ENSCHAG00000009348	g3bp2b (ENSCHAG00000009636) ##22	ENSCHAG00000009658	ENSCHAG00000009896	ENSCHAG00000011038	CORIN (ENSCHAG00000011548)	ENSCHAG00000013139	CNGA1 (ENSCHAG00000014018)	tfr2 (ENSCHAG00000014039)	ctc1 (ENSCHAG00000014178)	HMGB2 (ENSCHAG00000014204)	zgc:158659 (ENSCHAG00000014231)	ENSCHAG00000014343	MEPCE (ENSCHAG00000014353)	ENSCHAG00000014360	ENSCHAG00000014488	KCTD11 (ENSCHAG00000014494)
Otomorpha	ANCESTRAL SPECIES																	ENSGT00390000011365.b.x ##22
Otophysi	ANCESTRAL SPECIES																	ENSGT00390000011365.b.x ##22
Cyprinoidei	ANCESTRAL SPECIES																	ENSGT00390000011365.b.x ##22
Cyprininae	ANCESTRAL SPECIES																	ENSGT00390000011365.b.x ##22
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00390000011365.b.x ##22
Golden-line barbel	DUPLICATION
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	1583													ENSSGRG00000017807	zgc:158659 (ENSSGRG00000017811)	ENSSGRG00000018267	ENSSGRG00000018843 ##22	CORIN (ENSSGRG00000018849)	ENSSGRG00000018933	NFXL1 (ENSSGRG00000018934)
Golden-line barbel	MODERN SPECIES	3867																ENSSGRG00000007586 ##22
Golden-line barbel	MODERN SPECIES	2051											MEPCE (ENSSGRG00000009576)	ENSSGRG00000009455	ENSSGRG00000009446	ENSSGRG00000009444	ENSSGRG00000009440	ENSSGRG00000009437 ##22
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00390000011365.b ##22
Lamprey	MODERN SPECIES	4156																ENSPMAG00000009860 ##22
Hagfish	DUPLICATION
Hagfish	MODERN SPECIES	1467													ENSEBUG00000001707	ENSEBUG00000003003	ENSEBUG00000005246	ENSEBUG00000012902 ##22	sp9 (ENSEBUG00000007622)
Hagfish	MODERN SPECIES	484																ENSEBUG00000015799 ##22	rasgef1bb (ENSEBUG00000008410)	ENSEBUG00000013192	ENSEBUG00000003933	etnppl (ENSEBUG00000006271)	ENSEBUG00000015728	ENSEBUG00000011996	ENSEBUG00000005497	ENSEBUG00000006650	ENSEBUG00000003400	ENSEBUG00000009182