Mus_A	DUPLICATION
Mus_A	DUPLICATION
Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000158124	ENSGT00940000158245 #7	ENSGT00390000017923 #8	ENSGT00940000154451 #9	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #10	ENSGT00940000158770 #12	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000162517 #21	ENSGT00390000011365.a.sb.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342	ENSGT00390000010054.a	ENSGT00390000011576.b	ENSGT00940000156690	ENSGT00390000006633.a	ENSGT00940000161111	ENSGT00940000159577	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b.n	ENSGT00620000088064	ENSGT00390000002110	ENSGT00950000183007.a.b.g.b.d.a
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000158124	ENSGT00940000158245 #7	ENSGT00390000017923 #8	ENSGT00940000154451 #9	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #10	ENSGT00940000158770 #12	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000162517 #21	ENSGT00390000011365.a.sb.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342	ENSGT00390000010054.a	ENSGT00390000011576.b	ENSGT00940000156690	ENSGT00390000006633.a	ENSGT00940000161111	ENSGT00940000159577	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b.n	ENSGT00620000088064	ENSGT00390000002110	ENSGT00950000183007.a.b.g.b.d.a
Mus_C	ANCESTRAL SPECIES	3	ENSGT00940000158124	ENSGT00940000158245 #7	ENSGT00390000017923 #8	ENSGT00940000154451 #9	ENSGT00940000161754 #11	ENSGT00510000046908.a.a.a #10	ENSGT00940000158770 #12	ENSGT00950000183026.A.a.b #14	ENSGT00390000003288 #15	ENSGT00940000162406 #16	ENSGT00940000162044 #17	ENSGT00940000156583 #18	ENSGT00940000158507 #19	ENSGT00510000046787.e.b #20	ENSGT00940000162517 #21	ENSGT00390000011365.a.sb.a #22	ENSGT00940000159047 #23	ENSGT01100000263484.A.d #24	ENSGT00940000157342	ENSGT00390000010054.a	ENSGT00390000011576.b	ENSGT00940000156690	ENSGT00390000006633.a	ENSGT00940000161111	ENSGT00940000159577	ENSGT00950000183345	ENSGT00940000157328.C	ENSGT00390000000080.a.b.m	ENSGT00390000000080.a.b.n	ENSGT00620000088064	ENSGT00390000002110
Steppe mouse	MODERN SPECIES	3255	Cdc42se2 (ENSMSIG00000008050) #7	ENSMSIG00000008083 #8	Hint1 (ENSMSIG00000008122) #9	Tnip1 (ENSMSIG00000008139) #10	Gpx3 (ENSMSIG00000008214) #11	Anxa6 (ENSMSIG00000008219) #12	ENSMSIG00000008354 #13	Ccdc69 (ENSMSIG00000008369) #14	Gm2a (ENSMSIG00000008397) #15	Slc36a3 (ENSMSIG00000008419) #16	Slc36a2 (ENSMSIG00000008457) #17	Slc36a1 (ENSMSIG00000008490) #18	Fat2 (ENSMSIG00000008649) #19	ENSMSIG00000008765 #20	Atox1 (ENSMSIG00000008896) #21	G3bp1 (ENSMSIG00000008913) #22	Glra1 (ENSMSIG00000008952) #23	Nmur2 (ENSMSIG00000009215) #24
spretus	MODERN SPECIES	2	Rapgef6 (MGP_SPRETEiJ_G0017201)	Cdc42se2 (MGP_SPRETEiJ_G0017202) #7	Lyrm7 (MGP_SPRETEiJ_G0017203) #8	Hint1 (MGP_SPRETEiJ_G0017204) #9	MGP_SPRETEiJ_G0017205 #11	Tnip1 (MGP_SPRETEiJ_G0017206) #10	Anxa6 (MGP_SPRETEiJ_G0017207) #12	Ccdc69 (MGP_SPRETEiJ_G0017208) #14	Gm2a (MGP_SPRETEiJ_G0017209) #15	Slc36a3 (MGP_SPRETEiJ_G0017210) #16	Slc36a2 (MGP_SPRETEiJ_G0017211) #17	Slc36a1 (MGP_SPRETEiJ_G0017212) #18	Fat2 (MGP_SPRETEiJ_G0017213) #19	Sparc (MGP_SPRETEiJ_G0017214) #20	Atox1 (MGP_SPRETEiJ_G0017215) #21	G3bp1 (MGP_SPRETEiJ_G0017216) #22	Glra1 (MGP_SPRETEiJ_G0017217) #23	Nmur2 (MGP_SPRETEiJ_G0017218) #24	Gria1 (MGP_SPRETEiJ_G0017219)	Fam114a2 (MGP_SPRETEiJ_G0017220)	Mfap3 (MGP_SPRETEiJ_G0017221)	Galnt10 (MGP_SPRETEiJ_G0017222)	Sap30l (MGP_SPRETEiJ_G0017223)	Hand1 (MGP_SPRETEiJ_G0017224)	Larp1 (MGP_SPRETEiJ_G0017225)	Cnot8 (MGP_SPRETEiJ_G0017226)	Gemin5 (MGP_SPRETEiJ_G0017227)	Mrpl22 (MGP_SPRETEiJ_G0017228)	Igtp (MGP_SPRETEiJ_G0017229)	Irgm2 (MGP_SPRETEiJ_G0017230)	MGP_SPRETEiJ_G0017231
Mouse	MODERN SPECIES	2	Rapgef6 (ENSMUSG00000037533)	Cdc42se2 (ENSMUSG00000052298) #7	Lyrm7 (ENSMUSG00000020268) #8	Hint1 (ENSMUSG00000020267) #9	Gpx3 (ENSMUSG00000018339) #11	Tnip1 (ENSMUSG00000020400) #10	Anxa6 (ENSMUSG00000018340) #12	Ccdc69 (ENSMUSG00000049588) #14	Gm2a (ENSMUSG00000000594) #15	Slc36a3 (ENSMUSG00000049491) #16	Slc36a2 (ENSMUSG00000020264) #17	Slc36a1 (ENSMUSG00000020261) #18	Fat2 (ENSMUSG00000055333) #19	Sparc (ENSMUSG00000018593) #20	Atox1 (ENSMUSG00000018585) #21	G3bp1 (ENSMUSG00000018583) #22	Glra1 (ENSMUSG00000000263) #23	Nmur2 (ENSMUSG00000037393) #24	Gria1 (ENSMUSG00000020524)	Fam114a2 (ENSMUSG00000020523)	Mfap3 (ENSMUSG00000020522)	Galnt10 (ENSMUSG00000020520)	Sap30l (ENSMUSG00000020519)	Hand1 (ENSMUSG00000037335)	Larp1 (ENSMUSG00000037331)	Gm12248 (ENSMUSG00000086962)	Cnot8 (ENSMUSG00000020515)	Gemin5 (ENSMUSG00000037275)	Mrpl22 (ENSMUSG00000020514)	Igtp (ENSMUSG00000078853)	Irgm2 (ENSMUSG00000069874)
Ryukyu mouse	MODERN SPECIES	2	Rapgef6 (MGP_CAROLIEiJ_G0016359)	Cdc42se2 (MGP_CAROLIEiJ_G0016360) #7	Lyrm7 (MGP_CAROLIEiJ_G0016361) #8	Hint1 (MGP_CAROLIEiJ_G0016362) #9	MGP_CAROLIEiJ_G0016363 #11	Tnip1 (MGP_CAROLIEiJ_G0016364) #10	Anxa6 (MGP_CAROLIEiJ_G0016365) #12	Ccdc69 (MGP_CAROLIEiJ_G0016366) #14	Gm2a (MGP_CAROLIEiJ_G0016367) #15	Slc36a3 (MGP_CAROLIEiJ_G0016368) #16	Slc36a2 (MGP_CAROLIEiJ_G0016369) #17	Slc36a1 (MGP_CAROLIEiJ_G0016370) #18	Fat2 (MGP_CAROLIEiJ_G0016371) #19	Sparc (MGP_CAROLIEiJ_G0016372) #20	Atox1 (MGP_CAROLIEiJ_G0016373) #21	G3bp1 (MGP_CAROLIEiJ_G0016374) #22	Glra1 (MGP_CAROLIEiJ_G0016375) #23	Nmur2 (MGP_CAROLIEiJ_G0016376) #24	Gria1 (MGP_CAROLIEiJ_G0016377)	Fam114a2 (MGP_CAROLIEiJ_G0016378)	Mfap3 (MGP_CAROLIEiJ_G0016379)	Galnt10 (MGP_CAROLIEiJ_G0016380)	Sap30l (MGP_CAROLIEiJ_G0016381)	Hand1 (MGP_CAROLIEiJ_G0016382)	Larp1 (MGP_CAROLIEiJ_G0016383)	Cnot8 (MGP_CAROLIEiJ_G0016384)	Gemin5 (MGP_CAROLIEiJ_G0016385)	Mrpl22 (MGP_CAROLIEiJ_G0016386)	MGP_CAROLIEiJ_G0016387	MGP_CAROLIEiJ_G0016388	MGP_CAROLIEiJ_G0016389
Mus_A	ANCESTRAL SPECIES																	ENSGT00390000011365.a.sb.b ##22
Mus_B	ANCESTRAL SPECIES																	ENSGT00390000011365.a.sb.b ##22
Mus_C	ANCESTRAL SPECIES																	ENSGT00390000011365.a.sb.b ##22
Steppe mouse	MODERN SPECIES	3308													Ncald (ENSMSIG00000015269)	ENSMSIG00000015305	Grhl2 (ENSMSIG00000015315)	ENSMSIG00000015430 ##22	ENSMSIG00000015453	ENSMSIG00000015497	Ywhaz (ENSMSIG00000015504)	ENSMSIG00000015546	ENSMSIG00000015548	Pabpc1 (ENSMSIG00000015570)	Snx31 (ENSMSIG00000015612)	ENSMSIG00000015663	Rnf19a (ENSMSIG00000015703)	Spag1 (ENSMSIG00000015763)	ENSMSIG00000015808	Fbxo43 (ENSMSIG00000015840)	Rgs22 (ENSMSIG00000015850)	ENSMSIG00000015927	Cox6c (ENSMSIG00000015963)
Mus_A	ANCESTRAL SPECIES																	ENSGT00390000011365.a.tb ##22
Mus_B	ANCESTRAL SPECIES																	ENSGT00390000011365.a.tb ##22
Mus_C	ANCESTRAL SPECIES																	ENSGT00390000011365.a.tb ##22
Steppe mouse	MODERN SPECIES	3164																ENSMSIG00000010609 ##22	ENSMSIG00000010588