Murinae ANCESTRAL SPECIES 7 ENSGT00940000158124 ENSGT00940000158245 #7 ENSGT00390000017923 #8 ENSGT00940000154451 #9 ENSGT00940000161754 #11 ENSGT00510000046908.a.a.a #10 ENSGT00940000158770 #12 ENSGT00950000183026.A.a.b #14 ENSGT00390000003288 #15 ENSGT00940000162406 #16 ENSGT00940000162044 #17 ENSGT00940000156583 #18 ENSGT00940000158507 #19 ENSGT00510000046787.e.b #20 ENSGT00940000162517 #21 ENSGT00390000011365.a #22 ENSGT00940000159047 #23 ENSGT01100000263484.A.d #24 ENSGT00940000157342 ENSGT00390000010054.a ENSGT00390000011576.b ENSGT00940000156690 ENSGT00390000006633.a ENSGT00940000161111 ENSGT00940000159577 ENSGT00950000183345 ENSGT00940000157328.C ENSGT00390000000080.a.b ENSGT00620000088064 ENSGT00390000002110 ENSGT00950000183007.a.b.g.b.d.a Mus ANCESTRAL SPECIES 2 ENSGT00940000158124 ENSGT00940000158245 #7 ENSGT00390000017923 #8 ENSGT00940000154451 #9 ENSGT00940000161754 #11 ENSGT00510000046908.a.a.a #10 ENSGT00940000158770 #12 ENSGT00950000183026.A.a.b #14 ENSGT00390000003288 #15 ENSGT00940000162406 #16 ENSGT00940000162044 #17 ENSGT00940000156583 #18 ENSGT00940000158507 #19 ENSGT00510000046787.e.b #20 ENSGT00940000162517 #21 ENSGT00390000011365.a #22 ENSGT00940000159047 #23 ENSGT01100000263484.A.d #24 ENSGT00940000157342 ENSGT00390000010054.a ENSGT00390000011576.b ENSGT00940000156690 ENSGT00390000006633.a ENSGT00940000161111 ENSGT00940000159577 ENSGT00950000183345 ENSGT00940000157328.C ENSGT00390000000080.a.b ENSGT00620000088064 ENSGT00390000002110 ENSGT00950000183007.a.b.g.b.d.a Mus_A DUPLICATION Mus_A DUPLICATION Mus_A ANCESTRAL SPECIES 2 ENSGT00940000158124 ENSGT00940000158245 #7 ENSGT00390000017923 #8 ENSGT00940000154451 #9 ENSGT00940000161754 #11 ENSGT00510000046908.a.a.a #10 ENSGT00940000158770 #12 ENSGT00950000183026.A.a.b #14 ENSGT00390000003288 #15 ENSGT00940000162406 #16 ENSGT00940000162044 #17 ENSGT00940000156583 #18 ENSGT00940000158507 #19 ENSGT00510000046787.e.b #20 ENSGT00940000162517 #21 ENSGT00390000011365.a.sb.a #22 ENSGT00940000159047 #23 ENSGT01100000263484.A.d #24 ENSGT00940000157342 ENSGT00390000010054.a ENSGT00390000011576.b ENSGT00940000156690 ENSGT00390000006633.a ENSGT00940000161111 ENSGT00940000159577 ENSGT00950000183345 ENSGT00940000157328.C ENSGT00390000000080.a.b.n ENSGT00620000088064 ENSGT00390000002110 ENSGT00950000183007.a.b.g.b.d.a Mus_B ANCESTRAL SPECIES 2 ENSGT00940000158124 ENSGT00940000158245 #7 ENSGT00390000017923 #8 ENSGT00940000154451 #9 ENSGT00940000161754 #11 ENSGT00510000046908.a.a.a #10 ENSGT00940000158770 #12 ENSGT00950000183026.A.a.b #14 ENSGT00390000003288 #15 ENSGT00940000162406 #16 ENSGT00940000162044 #17 ENSGT00940000156583 #18 ENSGT00940000158507 #19 ENSGT00510000046787.e.b #20 ENSGT00940000162517 #21 ENSGT00390000011365.a.sb.a #22 ENSGT00940000159047 #23 ENSGT01100000263484.A.d #24 ENSGT00940000157342 ENSGT00390000010054.a ENSGT00390000011576.b ENSGT00940000156690 ENSGT00390000006633.a ENSGT00940000161111 ENSGT00940000159577 ENSGT00950000183345 ENSGT00940000157328.C ENSGT00390000000080.a.b.n ENSGT00620000088064 ENSGT00390000002110 ENSGT00950000183007.a.b.g.b.d.a Mus_C ANCESTRAL SPECIES 3 ENSGT00940000158124 ENSGT00940000158245 #7 ENSGT00390000017923 #8 ENSGT00940000154451 #9 ENSGT00940000161754 #11 ENSGT00510000046908.a.a.a #10 ENSGT00940000158770 #12 ENSGT00950000183026.A.a.b #14 ENSGT00390000003288 #15 ENSGT00940000162406 #16 ENSGT00940000162044 #17 ENSGT00940000156583 #18 ENSGT00940000158507 #19 ENSGT00510000046787.e.b #20 ENSGT00940000162517 #21 ENSGT00390000011365.a.sb.a #22 ENSGT00940000159047 #23 ENSGT01100000263484.A.d #24 ENSGT00940000157342 ENSGT00390000010054.a ENSGT00390000011576.b ENSGT00940000156690 ENSGT00390000006633.a ENSGT00940000161111 ENSGT00940000159577 ENSGT00950000183345 ENSGT00940000157328.C ENSGT00390000000080.a.b.m ENSGT00390000000080.a.b.n ENSGT00620000088064 ENSGT00390000002110 Steppe mouse MODERN SPECIES 3255 Cdc42se2 (ENSMSIG00000008050) #7 ENSMSIG00000008083 #8 Hint1 (ENSMSIG00000008122) #9 Tnip1 (ENSMSIG00000008139) #10 Gpx3 (ENSMSIG00000008214) #11 Anxa6 (ENSMSIG00000008219) #12 ENSMSIG00000008354 #13 Ccdc69 (ENSMSIG00000008369) #14 Gm2a (ENSMSIG00000008397) #15 Slc36a3 (ENSMSIG00000008419) #16 Slc36a2 (ENSMSIG00000008457) #17 Slc36a1 (ENSMSIG00000008490) #18 Fat2 (ENSMSIG00000008649) #19 ENSMSIG00000008765 #20 Atox1 (ENSMSIG00000008896) #21 G3bp1 (ENSMSIG00000008913) #22 Glra1 (ENSMSIG00000008952) #23 Nmur2 (ENSMSIG00000009215) #24 spretus MODERN SPECIES 2 Rapgef6 (MGP_SPRETEiJ_G0017201) Cdc42se2 (MGP_SPRETEiJ_G0017202) #7 Lyrm7 (MGP_SPRETEiJ_G0017203) #8 Hint1 (MGP_SPRETEiJ_G0017204) #9 MGP_SPRETEiJ_G0017205 #11 Tnip1 (MGP_SPRETEiJ_G0017206) #10 Anxa6 (MGP_SPRETEiJ_G0017207) #12 Ccdc69 (MGP_SPRETEiJ_G0017208) #14 Gm2a (MGP_SPRETEiJ_G0017209) #15 Slc36a3 (MGP_SPRETEiJ_G0017210) #16 Slc36a2 (MGP_SPRETEiJ_G0017211) #17 Slc36a1 (MGP_SPRETEiJ_G0017212) #18 Fat2 (MGP_SPRETEiJ_G0017213) #19 Sparc (MGP_SPRETEiJ_G0017214) #20 Atox1 (MGP_SPRETEiJ_G0017215) #21 G3bp1 (MGP_SPRETEiJ_G0017216) #22 Glra1 (MGP_SPRETEiJ_G0017217) #23 Nmur2 (MGP_SPRETEiJ_G0017218) #24 Gria1 (MGP_SPRETEiJ_G0017219) Fam114a2 (MGP_SPRETEiJ_G0017220) Mfap3 (MGP_SPRETEiJ_G0017221) Galnt10 (MGP_SPRETEiJ_G0017222) Sap30l (MGP_SPRETEiJ_G0017223) Hand1 (MGP_SPRETEiJ_G0017224) Larp1 (MGP_SPRETEiJ_G0017225) Cnot8 (MGP_SPRETEiJ_G0017226) Gemin5 (MGP_SPRETEiJ_G0017227) Mrpl22 (MGP_SPRETEiJ_G0017228) Igtp (MGP_SPRETEiJ_G0017229) Irgm2 (MGP_SPRETEiJ_G0017230) MGP_SPRETEiJ_G0017231 Mouse MODERN SPECIES 2 Rapgef6 (ENSMUSG00000037533) Cdc42se2 (ENSMUSG00000052298) #7 Lyrm7 (ENSMUSG00000020268) #8 Hint1 (ENSMUSG00000020267) #9 Gpx3 (ENSMUSG00000018339) #11 Tnip1 (ENSMUSG00000020400) #10 Anxa6 (ENSMUSG00000018340) #12 Ccdc69 (ENSMUSG00000049588) #14 Gm2a (ENSMUSG00000000594) #15 Slc36a3 (ENSMUSG00000049491) #16 Slc36a2 (ENSMUSG00000020264) #17 Slc36a1 (ENSMUSG00000020261) #18 Fat2 (ENSMUSG00000055333) #19 Sparc (ENSMUSG00000018593) #20 Atox1 (ENSMUSG00000018585) #21 G3bp1 (ENSMUSG00000018583) #22 Glra1 (ENSMUSG00000000263) #23 Nmur2 (ENSMUSG00000037393) #24 Gria1 (ENSMUSG00000020524) Fam114a2 (ENSMUSG00000020523) Mfap3 (ENSMUSG00000020522) Galnt10 (ENSMUSG00000020520) Sap30l (ENSMUSG00000020519) Hand1 (ENSMUSG00000037335) Larp1 (ENSMUSG00000037331) Gm12248 (ENSMUSG00000086962) Cnot8 (ENSMUSG00000020515) Gemin5 (ENSMUSG00000037275) Mrpl22 (ENSMUSG00000020514) Igtp (ENSMUSG00000078853) Irgm2 (ENSMUSG00000069874) Ryukyu mouse MODERN SPECIES 2 Rapgef6 (MGP_CAROLIEiJ_G0016359) Cdc42se2 (MGP_CAROLIEiJ_G0016360) #7 Lyrm7 (MGP_CAROLIEiJ_G0016361) #8 Hint1 (MGP_CAROLIEiJ_G0016362) #9 MGP_CAROLIEiJ_G0016363 #11 Tnip1 (MGP_CAROLIEiJ_G0016364) #10 Anxa6 (MGP_CAROLIEiJ_G0016365) #12 Ccdc69 (MGP_CAROLIEiJ_G0016366) #14 Gm2a (MGP_CAROLIEiJ_G0016367) #15 Slc36a3 (MGP_CAROLIEiJ_G0016368) #16 Slc36a2 (MGP_CAROLIEiJ_G0016369) #17 Slc36a1 (MGP_CAROLIEiJ_G0016370) #18 Fat2 (MGP_CAROLIEiJ_G0016371) #19 Sparc (MGP_CAROLIEiJ_G0016372) #20 Atox1 (MGP_CAROLIEiJ_G0016373) #21 G3bp1 (MGP_CAROLIEiJ_G0016374) #22 Glra1 (MGP_CAROLIEiJ_G0016375) #23 Nmur2 (MGP_CAROLIEiJ_G0016376) #24 Gria1 (MGP_CAROLIEiJ_G0016377) Fam114a2 (MGP_CAROLIEiJ_G0016378) Mfap3 (MGP_CAROLIEiJ_G0016379) Galnt10 (MGP_CAROLIEiJ_G0016380) Sap30l (MGP_CAROLIEiJ_G0016381) Hand1 (MGP_CAROLIEiJ_G0016382) Larp1 (MGP_CAROLIEiJ_G0016383) Cnot8 (MGP_CAROLIEiJ_G0016384) Gemin5 (MGP_CAROLIEiJ_G0016385) Mrpl22 (MGP_CAROLIEiJ_G0016386) MGP_CAROLIEiJ_G0016387 MGP_CAROLIEiJ_G0016388 MGP_CAROLIEiJ_G0016389 Mus_A ANCESTRAL SPECIES ENSGT00390000011365.a.sb.b ##22 Mus_B ANCESTRAL SPECIES ENSGT00390000011365.a.sb.b ##22 Mus_C ANCESTRAL SPECIES ENSGT00390000011365.a.sb.b ##22 Steppe mouse MODERN SPECIES 3308 Ncald (ENSMSIG00000015269) ENSMSIG00000015305 Grhl2 (ENSMSIG00000015315) ENSMSIG00000015430 ##22 ENSMSIG00000015453 ENSMSIG00000015497 Ywhaz (ENSMSIG00000015504) ENSMSIG00000015546 ENSMSIG00000015548 Pabpc1 (ENSMSIG00000015570) Snx31 (ENSMSIG00000015612) ENSMSIG00000015663 Rnf19a (ENSMSIG00000015703) Spag1 (ENSMSIG00000015763) ENSMSIG00000015808 Fbxo43 (ENSMSIG00000015840) Rgs22 (ENSMSIG00000015850) ENSMSIG00000015927 Cox6c (ENSMSIG00000015963) Mus_A ANCESTRAL SPECIES ENSGT00390000011365.a.tb ##22 Mus_B ANCESTRAL SPECIES ENSGT00390000011365.a.tb ##22 Mus_C ANCESTRAL SPECIES ENSGT00390000011365.a.tb ##22 Steppe mouse MODERN SPECIES 3164 ENSMSIG00000010609 ##22 ENSMSIG00000010588 Shrew mouse MODERN SPECIES 5 Rapgef6 (MGP_PahariEiJ_G0017494) Cdc42se2 (MGP_PahariEiJ_G0017495) #7 Lyrm7 (MGP_PahariEiJ_G0017496) #8 Hint1 (MGP_PahariEiJ_G0017497) #9 MGP_PahariEiJ_G0017498 #11 Tnip1 (MGP_PahariEiJ_G0017499) #10 Anxa6 (MGP_PahariEiJ_G0017500) #12 Ccdc69 (MGP_PahariEiJ_G0017501) #14 Gm2a (MGP_PahariEiJ_G0017502) #15 Slc36a3 (MGP_PahariEiJ_G0017503) #16 MGP_PahariEiJ_G0017504 #17 Slc36a1 (MGP_PahariEiJ_G0017505) #18 Fat2 (MGP_PahariEiJ_G0017506) #19 Sparc (MGP_PahariEiJ_G0017507) #20 Atox1 (MGP_PahariEiJ_G0017508) #21 G3bp1 (MGP_PahariEiJ_G0017509) #22 Glra1 (MGP_PahariEiJ_G0017510) #23 Nmur2 (MGP_PahariEiJ_G0017511) #24 Gria1 (MGP_PahariEiJ_G0017512) Fam114a2 (MGP_PahariEiJ_G0017513) Mfap3 (MGP_PahariEiJ_G0017514) Galnt10 (MGP_PahariEiJ_G0017515) Sap30l (MGP_PahariEiJ_G0017516) Hand1 (MGP_PahariEiJ_G0017517) Larp1 (MGP_PahariEiJ_G0017518) Cnot8 (MGP_PahariEiJ_G0017519) Gemin5 (MGP_PahariEiJ_G0017520) Mrpl22 (MGP_PahariEiJ_G0017521) MGP_PahariEiJ_G0017522 MGP_PahariEiJ_G0017523 MGP_PahariEiJ_G0017524 Rat DUPLICATION Rat MODERN SPECIES 1 Rapgef6 (ENSRNOG00000009995) Cdc42se2-ps1 (ENSRNOG00000042449) #7 Lyrm7 (ENSRNOG00000045961) #8 Tnip1 (ENSRNOG00000010370) #10 Anxa6 (ENSRNOG00000010668) #12 LOC100362400 (ENSRNOG00000064427) Ybx1-ps20 (ENSRNOG00000032902) Ccdc69 (ENSRNOG00000021370) #14 Gm2a (ENSRNOG00000052219) #15 Slc36a3 (ENSRNOG00000021310) #16 Slc36a2 (ENSRNOG00000011892) #17 Slc36a1 (ENSRNOG00000012356) #18 Fat2 (ENSRNOG00000012575) #19 Sparc (ENSRNOG00000012840) #20 Atox1 (ENSRNOG00000013118) #21 G3bp1 (ENSRNOG00000013186) #22 Glra1 (ENSRNOG00000013588) #23 RGD1563668 (ENSRNOG00000038478) Nmur2 (ENSRNOG00000014081) #24 LOC102552619 (ENSRNOG00000027803) LOC120095104 (ENSRNOG00000062939) LOC102552882 (ENSRNOG00000038474) ENSRNOG00000069020 Gria1 (ENSRNOG00000045816) Fam114a2 (ENSRNOG00000002423) Mfap3 (ENSRNOG00000002443) Galnt10 (ENSRNOG00000002488) Sap30l (ENSRNOG00000002575) Hand1 (ENSRNOG00000002582) Larp1 (ENSRNOG00000031544) Atp5mk-ps2 (ENSRNOG00000042869) Rat MODERN SPECIES 14 LOC120102505 (ENSRNOG00000042804) Grm7 (ENSRNOG00000005662) Edem1 (ENSRNOG00000055365) Arl8b (ENSRNOG00000055860) Bhlhe40 (ENSRNOG00000007152) AABR07061707.1 (ENSRNOG00000052718) Itpr1 (ENSRNOG00000007104) Sumf1 (ENSRNOG00000006813) Setmar (ENSRNOG00000006806) Lrrn1 (ENSRNOG00000006802) Crbn (ENSRNOG00000006534) Trnt1 (ENSRNOG00000006432) Il5ra (ENSRNOG00000005954) Cntn4 (ENSRNOG00000005652) Cntn6 (ENSRNOG00000032517) AABR07061614.1 (ENSRNOG00000032820) #22 ENSRNOG00000065903 Chl1 (ENSRNOG00000045771) Cntn3 (ENSRNOG00000006144) Pdzrn3 (ENSRNOG00000057556) Ppp4r2 (ENSRNOG00000024647) Gxylt2 (ENSRNOG00000005621) Actg1-ps9 (ENSRNOG00000062691) Shq1 (ENSRNOG00000005433) LOC120102351 (ENSRNOG00000005353) LOC120102174 (ENSRNOG00000033673) Prok2 (ENSRNOG00000010898) Ier3ip1-ps1 (ENSRNOG00000030004) Gpr27 (ENSRNOG00000010880) Eif4e3 (ENSRNOG00000010301) Foxp1 (ENSRNOG00000009184)