Rodentia_B ANCESTRAL SPECIES 4 ENSGT00940000158124 #7 ENSGT00940000158245 #8 ENSGT00390000017923 #9 ENSGT00940000154451 #10 ENSGT00940000161754 #11 ENSGT00510000046908.a.a.a #12 ENSGT00940000158770 #13 ENSGT00950000183026.A.a.b #14 ENSGT00390000003288 #15 ENSGT00940000162406 #16 ENSGT00940000162044 #17 ENSGT00940000156583 #18 ENSGT00940000158507 #19 ENSGT00510000046787.e.b #20 ENSGT00940000162517 #21 ENSGT00390000011365.a #22 ENSGT00940000159047 #23 ENSGT01100000263484.A.d #24 ENSGT00940000157342 ENSGT00390000010054.a ENSGT00390000011576.b ENSGT00940000156690 ENSGT00390000006633.a ENSGT00940000161111 ENSGT00940000159577 ENSGT00950000183345 ENSGT00940000157328.C ENSGT00390000000080.a.b ENSGT00620000088064 ENSGT00390000002110 ENSGT00940000158509 Kangaroo rat MODERN SPECIES 495 ENSDORG00000012701 #7 Cdc42se2 (ENSDORG00000027349) #8 Lyrm7 (ENSDORG00000026901) #9 ENSDORG00000011944 #10 Gpx3 (ENSDORG00000028624) #11 Tnip1 (ENSDORG00000006740) #12 Anxa6 (ENSDORG00000016572) #13 ENSDORG00000016699 #14 Gm2a (ENSDORG00000012628) #15 Slc36a3 (ENSDORG00000012630) #16 Slc36a2 (ENSDORG00000012631) #17 Slc36a1 (ENSDORG00000012735) #18 Fat2 (ENSDORG00000023995) #19 Sparc (ENSDORG00000001562) #20 Atox1 (ENSDORG00000002944) #21 G3bp1 (ENSDORG00000025959) #22 Glra1 (ENSDORG00000012396) #23 Nmur2 (ENSDORG00000024711) #24 Myomorpha ANCESTRAL SPECIES 28 ENSGT00940000158124 #7 ENSGT00940000158245 #8 ENSGT00390000017923 #9 ENSGT00940000154451 #10 ENSGT00940000161754 #11 ENSGT00510000046908.a.a.a #12 ENSGT00940000158770 #13 ENSGT00950000183026.A.a.b #14 ENSGT00390000003288 #15 ENSGT00940000162406 #16 ENSGT00940000162044 #17 ENSGT00940000156583 #18 ENSGT00940000158507 #19 ENSGT00510000046787.e.b #20 ENSGT00940000162517 #21 ENSGT00390000011365.a #22 ENSGT00940000159047 #23 ENSGT01100000263484.A.d #24 ENSGT00940000157342 ENSGT00390000010054.a ENSGT00390000011576.b ENSGT00940000156690 ENSGT00390000006633.a ENSGT00940000161111 ENSGT00940000159577 ENSGT00950000183345 ENSGT00940000157328.C ENSGT00390000000080.a.b ENSGT00620000088064 ENSGT00390000002110 ENSGT00940000163610 Lesser Egyptian jerboa MODERN SPECIES 133 Sec24a (ENSJJAG00000021996) N4bp3 (ENSJJAG00000023037) Rmnd5b (ENSJJAG00000017175) Nhp2 (ENSJJAG00000016469) Hnrnpab (ENSJJAG00000022240) Phykpl (ENSJJAG00000014498) Col23a1 (ENSJJAG00000020773) Clk4 (ENSJJAG00000014522) Zfp354a (ENSJJAG00000001494) Prop1 (ENSJJAG00000018429) Zfp354b (ENSJJAG00000018840) Zfp2 (ENSJJAG00000005258) Zfp454 (ENSJJAG00000005501) Grm6 (ENSJJAG00000010828) Zfp354c (ENSJJAG00000015911) G3bp1 (ENSJJAG00000017035) #22 Glra1 (ENSJJAG00000010424) #23 ENSJJAG00000016616 Nmur2 (ENSJJAG00000006251) #24 Gria1 (ENSJJAG00000011336) Fam114a2 (ENSJJAG00000018239) Mfap3 (ENSJJAG00000011608) Galnt10 (ENSJJAG00000011786) Sap30l (ENSJJAG00000024095) Hand1 (ENSJJAG00000023893) Muroidea ANCESTRAL SPECIES 10 ENSGT00940000158124 #7 ENSGT00940000158245 #8 ENSGT00390000017923 #9 ENSGT00940000154451 #10 ENSGT00940000161754 #11 ENSGT00510000046908.a.a.a #12 ENSGT00940000158770 #13 ENSGT00950000183026.A.a.b #14 ENSGT00390000003288 #15 ENSGT00940000162406 #16 ENSGT00940000162044 #17 ENSGT00940000156583 #18 ENSGT00940000158507 #19 ENSGT00510000046787.e.b #20 ENSGT00940000162517 #21 ENSGT00390000011365.a #22 ENSGT00940000159047 #23 ENSGT01100000263484.A.d #24 ENSGT00940000157342 ENSGT00390000010054.a ENSGT00390000011576.b ENSGT00940000156690 ENSGT00390000006633.a ENSGT00940000161111 ENSGT00940000159577 ENSGT00950000183345 ENSGT00940000157328.C ENSGT00390000000080.a.b ENSGT00620000088064 ENSGT00390000002110 ENSGT00940000163610 Upper Galilee mountains blind mole rat DUPLICATION Upper Galilee mountains blind mole rat MODERN SPECIES 1606 Cdc42se2 (ENSNGAG00000017742) #8 Lyrm7 (ENSNGAG00000022092) #9 Hint1 (ENSNGAG00000016071) #10 Gpx3 (ENSNGAG00000023218) #11 Tnip1 (ENSNGAG00000019234) #12 Anxa6 (ENSNGAG00000001390) #13 Ccdc69 (ENSNGAG00000004298) #14 Gm2a (ENSNGAG00000006698) #15 Slc36a3 (ENSNGAG00000000782) #16 Slc36a2 (ENSNGAG00000019725) #17 Slc36a1 (ENSNGAG00000018121) #18 Fat2 (ENSNGAG00000005998) #19 Sparc (ENSNGAG00000019526) #20 Atox1 (ENSNGAG00000019105) #21 G3bp1 (ENSNGAG00000010742) #22 Glra1 (ENSNGAG00000006117) #23 Upper Galilee mountains blind mole rat MODERN SPECIES 1698 ENSNGAG00000023820 ENSNGAG00000022145 Olfm4 (ENSNGAG00000013517) Pcdh8 (ENSNGAG00000000936) ENSNGAG00000023431 #22 Cnmd (ENSNGAG00000022665) Sugt1 (ENSNGAG00000021964) Elf1 (ENSNGAG00000023108) Wbp4 (ENSNGAG00000024369) Kbtbd6 (ENSNGAG00000012119) Kbtbd7 (ENSNGAG00000011545) Mtrf1 (ENSNGAG00000014460) Naa16 (ENSNGAG00000004140) Rgcc (ENSNGAG00000022423) Vwa8 (ENSNGAG00000010244) Dgkh (ENSNGAG00000024075) Akap11 (ENSNGAG00000010398) Tnfsf11 (ENSNGAG00000023783) ENSNGAG00000009242 Fam216b (ENSNGAG00000008030) Muroidea_A ANCESTRAL SPECIES 1 ENSGT00940000158124 #7 ENSGT00940000158245 #8 ENSGT00390000017923 #9 ENSGT00940000154451 #10 ENSGT00940000161754 #11 ENSGT00510000046908.a.a.a #12 ENSGT00940000158770 #13 ENSGT00950000183026.A.a.b #14 ENSGT00390000003288 #15 ENSGT00940000162406 #16 ENSGT00940000162044 #17 ENSGT00940000156583 #18 ENSGT00940000158507 #19 ENSGT00510000046787.e.b #20 ENSGT00940000162517 #21 ENSGT00390000011365.a #22 ENSGT00940000159047 #23 ENSGT01100000263484.A.d #24 ENSGT00940000157342 ENSGT00390000010054.a ENSGT00390000011576.b ENSGT00940000156690 ENSGT00390000006633.a ENSGT00940000161111 ENSGT00940000159577 ENSGT00950000183345 ENSGT00940000157328.C ENSGT00390000000080.a.b ENSGT00620000088064 ENSGT00390000002110 ENSGT00950000183007.a.b.g.a.b.b.i Cricetidae ANCESTRAL SPECIES ENSGT00940000158124 #7 ENSGT00940000158245 #8 ENSGT00390000017923 #9 ENSGT00940000154451 #10 ENSGT00940000161754 #11 ENSGT00510000046908.a.a.a #12 ENSGT00940000158770 #13 ENSGT00950000183026.A.a.b #14 ENSGT00390000003288 #15 ENSGT00940000162406 #16 ENSGT00940000162044 #17 ENSGT00940000156583 #18 ENSGT00940000158507 #19 ENSGT00510000046787.e.b #20 ENSGT00940000162517 #21 ENSGT00390000011365.a #22 ENSGT00940000159047 #23 ENSGT01100000263484.A.d #24 ENSGT00940000157342 ENSGT00390000010054.a ENSGT00390000011576.b ENSGT00940000156690 ENSGT00390000006633.a ENSGT00940000161111 ENSGT00940000159577 ENSGT00940000157328.C ENSGT00390000000080.a.b ENSGT00620000088064 ENSGT00390000002110 ENSGT00950000183007.a.b.g.a.b.b.i ENSGT00950000183007.a.b.g.b.d.a Cricetidae_B ANCESTRAL SPECIES ENSGT00940000158124 #7 ENSGT00940000158245 #8 ENSGT00390000017923 #9 ENSGT00940000154451 #10 ENSGT00940000161754 #11 ENSGT00510000046908.a.a.a #12 ENSGT00940000158770 #13 ENSGT00950000183026.A.a.b #14 ENSGT00390000003288 #15 ENSGT00940000162406 #16 ENSGT00940000162044 #17 ENSGT00940000156583 #18 ENSGT00940000158507 #19 ENSGT00510000046787.e.b #20 ENSGT00940000162517 #21 ENSGT00390000011365.a #22 ENSGT00940000159047 #23 ENSGT01100000263484.A.d #24 ENSGT00940000157342 ENSGT00390000010054.a ENSGT00390000011576.b ENSGT00940000156690 ENSGT00390000006633.a ENSGT00940000161111 ENSGT00940000159577 ENSGT00940000157328.C ENSGT00390000000080.a.b ENSGT00620000088064 ENSGT00390000002110 ENSGT00950000183007.a.b.g.b.d.a ENSGT00950000183007.a.b.g.a.b.b.i Northern American deer mouse MODERN SPECIES 21 Rapgef6 (ENSPEMG00000018231) #7 Cdc42se2 (ENSPEMG00000028684) #8 Lyrm7 (ENSPEMG00000015408) #9 Hint1 (ENSPEMG00000026673) #10 Gpx3 (ENSPEMG00000020568) #11 Tnip1 (ENSPEMG00000020685) #12 Anxa6 (ENSPEMG00000001728) #13 Ccdc69 (ENSPEMG00000020807) #14 Gm2a (ENSPEMG00000024547) #15 Slc36a3 (ENSPEMG00000014810) #16 Slc36a2 (ENSPEMG00000006570) #17 Slc36a1 (ENSPEMG00000027621) #18 Fat2 (ENSPEMG00000010255) #19 Sparc (ENSPEMG00000022374) #20 Atox1 (ENSPEMG00000015125) #21 G3bp1 (ENSPEMG00000020531) #22 Glra1 (ENSPEMG00000024408) #23 Nmur2 (ENSPEMG00000013761) #24 Gria1 (ENSPEMG00000020992) Fam114a2 (ENSPEMG00000020352) Mfap3 (ENSPEMG00000029755) Galnt10 (ENSPEMG00000021112) Sap30l (ENSPEMG00000029956) Hand1 (ENSPEMG00000021867) Larp1 (ENSPEMG00000022523) Cnot8 (ENSPEMG00000021153) Gemin5 (ENSPEMG00000014992) Mrpl22 (ENSPEMG00000021188) ENSPEMG00000028084 ENSPEMG00000028532 ENSPEMG00000028425 Prairie vole MODERN SPECIES 15 Rapgef6 (ENSMOCG00000002583) #7 Cdc42se2 (ENSMOCG00000019753) #8 ENSMOCG00000021969 #9 Hint1 (ENSMOCG00000015219) #10 Gpx3 (ENSMOCG00000012707) #11 Tnip1 (ENSMOCG00000019037) #12 Anxa6 (ENSMOCG00000022776) #13 Ccdc69 (ENSMOCG00000001057) #14 Gm2a (ENSMOCG00000021206) #15 Slc36a3 (ENSMOCG00000022181) #16 Slc36a2 (ENSMOCG00000019153) #17 Slc36a1 (ENSMOCG00000018359) #18 Fat2 (ENSMOCG00000004996) #19 Sparc (ENSMOCG00000014197) #20 Atox1 (ENSMOCG00000012051) #21 G3bp1 (ENSMOCG00000005709) #22 Glra1 (ENSMOCG00000022733) #23 Nmur2 (ENSMOCG00000020916) #24 Gria1 (ENSMOCG00000022383) Fam114a2 (ENSMOCG00000003408) Mfap3 (ENSMOCG00000022737) Galnt10 (ENSMOCG00000022339) Sap30l (ENSMOCG00000005889) Hand1 (ENSMOCG00000012912) Larp1 (ENSMOCG00000008920) Gm12248 (ENSMOCG00000018783) ENSMOCG00000002156 Gemin5 (ENSMOCG00000018131) Mrpl22 (ENSMOCG00000021016) ENSMOCG00000014171 Irgm2 (ENSMOCG00000012064) Cricetinae ANCESTRAL SPECIES ENSGT00940000158124 #7 ENSGT00940000158245 #8 ENSGT00390000017923 #9 ENSGT00940000154451 #10 ENSGT00940000161754 #11 ENSGT00510000046908.a.a.a #12 ENSGT00940000158770 #13 ENSGT00950000183026.A.a.b #14 ENSGT00390000003288 #15 ENSGT00940000162406 #16 ENSGT00940000162044 #17 ENSGT00940000156583 #18 ENSGT00940000158507 #19 ENSGT00510000046787.e.b #20 ENSGT00940000162517 #21 ENSGT00390000011365.a #22 ENSGT00940000159047 #23 ENSGT01100000263484.A.d #24 ENSGT00940000157342 ENSGT00390000010054.a ENSGT00390000011576.b ENSGT00940000156690 ENSGT00390000006633.a ENSGT00940000161111 ENSGT00940000159577 ENSGT00940000157328.C ENSGT00390000000080.a.b ENSGT00620000088064 ENSGT00390000002110 ENSGT00950000183007.a.b.g.a.b.b.i ENSGT00950000183007.a.b.g.b.d.a Chinese hamster chok1gshd DUPLICATION Chinese hamster chok1gshd DUPLICATION Chinese hamster chok1gshd MODERN SPECIES 229 Rapgef6 (ENSCGRG00001017839) #7 Cdc42se2 (ENSCGRG00001011403) #8 Lyrm7 (ENSCGRG00001013810) #9 Hint1 (ENSCGRG00001023991) #10 Gpx3 (ENSCGRG00001021713) #11 Tnip1 (ENSCGRG00001024112) #12 Anxa6 (ENSCGRG00001009081) #13 Ccdc69 (ENSCGRG00001012272) #14 Gm2a (ENSCGRG00001013028) #15 Slc36a3 (ENSCGRG00001004759) #16 Slc36a2 (ENSCGRG00001000746) #17 Slc36a1 (ENSCGRG00001006530) #18 Fat2 (ENSCGRG00001009133) #19 Sparc (ENSCGRG00001018155) #20 Atox1 (ENSCGRG00001013451) #21 ENSCGRG00001015623 #22 Glra1 (ENSCGRG00001018124) #23 ENSCGRG00001021201 Nmur2 (ENSCGRG00001022445) #24 Gria1 (ENSCGRG00001010996) ENSCGRG00001021245 Fam114a2 (ENSCGRG00001019860) Mfap3 (ENSCGRG00001023022) Galnt10 (ENSCGRG00001024161) Sap30l (ENSCGRG00001023382) Hand1 (ENSCGRG00001013396) Larp1 (ENSCGRG00001016913) Gm12248 (ENSCGRG00001013725) Cnot8 (ENSCGRG00001014687) Gemin5 (ENSCGRG00001019095) Mrpl22 (ENSCGRG00001019966) Chinese hamster chok1gshd MODERN SPECIES 3 ENSCGRG00001010070 Mbnl2 (ENSCGRG00001015686) Oxgr1 (ENSCGRG00001004650) Hs6st3 (ENSCGRG00001019622) Uggt2 (ENSCGRG00001016376) Dnajc3 (ENSCGRG00001016665) Dzip1 (ENSCGRG00001024642) Cldn10 (ENSCGRG00001018980) Abcc4 (ENSCGRG00001005625) ENSCGRG00001022896 Sox21 (ENSCGRG00001001959) Gpr180 (ENSCGRG00001013522) Tgds (ENSCGRG00001000527) Dct (ENSCGRG00001019389) Gpc6 (ENSCGRG00001014308) ENSCGRG00001022279 #22 Gpc5 (ENSCGRG00001012658) ENSCGRG00001014085 ENSCGRG00001000596 Slitrk5 (ENSCGRG00001006071) Slitrk6 (ENSCGRG00001002482) Slitrk1 (ENSCGRG00001002013) Trim52 (ENSCGRG00001002565) ENSCGRG00001007508 Spry2 (ENSCGRG00001006571) Ndfip2 (ENSCGRG00001023296) Rbm26 (ENSCGRG00001018743) Obi1 (ENSCGRG00001023032) Pou4f1 (ENSCGRG00001018351) ENSCGRG00001002516 Ednrb (ENSCGRG00001000051) Chinese hamster chok1gshd MODERN SPECIES 284 Myo5a (ENSCGRG00001016350) Myo5c (ENSCGRG00001004401) Gnb5 (ENSCGRG00001012527) ENSCGRG00001021399 ENSCGRG00001019175 Leo1 (ENSCGRG00001021688) Tmod3 (ENSCGRG00001015113) Tmod2 (ENSCGRG00001012835) Lysmd2 (ENSCGRG00001007594) Scg3 (ENSCGRG00001003651) Bmp5 (ENSCGRG00001018423) Hmgcll1 (ENSCGRG00001014320) ENSCGRG00001012775 Gfral (ENSCGRG00001004854) Hcrtr2 (ENSCGRG00001024668) ENSCGRG00001024004 #22 Fam83b (ENSCGRG00001020454) Tinag (ENSCGRG00001001754) Mlip (ENSCGRG00001019082) Lrrc1 (ENSCGRG00001007045) Klhl31 (ENSCGRG00001022670) Gclc (ENSCGRG00001020917) ELOVL5 (ENSCGRG00001012477) Gcm1 (ENSCGRG00001024591) Fbxo9 (ENSCGRG00001024064) Cilk1 (ENSCGRG00001019252) Gsta4 (ENSCGRG00001017948) ENSCGRG00001003804 ENSCGRG00001024170 ENSCGRG00001004595 ENSCGRG00001015955 Golden Hamster MODERN SPECIES 627 Fnip1 (ENSMAUG00000008472) Rapgef6 (ENSMAUG00000010508) #7 ENSMAUG00000015029 Lyrm7 (ENSMAUG00000015188) #9 Hint1 (ENSMAUG00000003917) #10 Gpx3 (ENSMAUG00000002070) #11 Tnip1 (ENSMAUG00000010278) #12 Anxa6 (ENSMAUG00000008199) #13 Gm2a (ENSMAUG00000007969) #15 Slc36a3 (ENSMAUG00000010340) #16 Slc36a2 (ENSMAUG00000012050) #17 Slc36a1 (ENSMAUG00000008064) #18 Fat2 (ENSMAUG00000001659) #19 Sparc (ENSMAUG00000015053) #20 Atox1 (ENSMAUG00000011916) #21 G3bp1 (ENSMAUG00000008655) #22 Glra1 (ENSMAUG00000001329) #23 ENSMAUG00000022058 Nmur2 (ENSMAUG00000001459) #24 Gria1 (ENSMAUG00000022238) Fam114a2 (ENSMAUG00000003829) Mfap3 (ENSMAUG00000022064) Galnt10 (ENSMAUG00000022260) Sap30l (ENSMAUG00000001548) Hand1 (ENSMAUG00000022272) Larp1 (ENSMAUG00000001385) Gm12248 (ENSMAUG00000021997) ENSMAUG00000022252 Gemin5 (ENSMAUG00000005361) Mrpl22 (ENSMAUG00000021980) Igtp (ENSMAUG00000010911) Murinae ANCESTRAL SPECIES 7 ENSGT00940000158124 #7 ENSGT00940000158245 #8 ENSGT00390000017923 #9 ENSGT00940000154451 #10 ENSGT00940000161754 #11 ENSGT00510000046908.a.a.a #12 ENSGT00940000158770 #13 ENSGT00950000183026.A.a.b #14 ENSGT00390000003288 #15 ENSGT00940000162406 #16 ENSGT00940000162044 #17 ENSGT00940000156583 #18 ENSGT00940000158507 #19 ENSGT00510000046787.e.b #20 ENSGT00940000162517 #21 ENSGT00390000011365.a #22 ENSGT00940000159047 #23 ENSGT01100000263484.A.d #24 ENSGT00940000157342 ENSGT00390000010054.a ENSGT00390000011576.b ENSGT00940000156690 ENSGT00390000006633.a ENSGT00940000161111 ENSGT00940000159577 ENSGT00950000183345 ENSGT00940000157328.C ENSGT00390000000080.a.b ENSGT00620000088064 ENSGT00390000002110 ENSGT00950000183007.a.b.g.b.d.a Mus ANCESTRAL SPECIES 2 ENSGT00940000158124 #7 ENSGT00940000158245 #8 ENSGT00390000017923 #9 ENSGT00940000154451 #10 ENSGT00940000161754 #11 ENSGT00510000046908.a.a.a #12 ENSGT00940000158770 #13 ENSGT00950000183026.A.a.b #14 ENSGT00390000003288 #15 ENSGT00940000162406 #16 ENSGT00940000162044 #17 ENSGT00940000156583 #18 ENSGT00940000158507 #19 ENSGT00510000046787.e.b #20 ENSGT00940000162517 #21 ENSGT00390000011365.a #22 ENSGT00940000159047 #23 ENSGT01100000263484.A.d #24 ENSGT00940000157342 ENSGT00390000010054.a ENSGT00390000011576.b ENSGT00940000156690 ENSGT00390000006633.a ENSGT00940000161111 ENSGT00940000159577 ENSGT00950000183345 ENSGT00940000157328.C ENSGT00390000000080.a.b ENSGT00620000088064 ENSGT00390000002110 ENSGT00950000183007.a.b.g.b.d.a Shrew mouse MODERN SPECIES 5 Rapgef6 (MGP_PahariEiJ_G0017494) #7 Cdc42se2 (MGP_PahariEiJ_G0017495) #8 Lyrm7 (MGP_PahariEiJ_G0017496) #9 Hint1 (MGP_PahariEiJ_G0017497) #10 MGP_PahariEiJ_G0017498 #11 Tnip1 (MGP_PahariEiJ_G0017499) #12 Anxa6 (MGP_PahariEiJ_G0017500) #13 Ccdc69 (MGP_PahariEiJ_G0017501) #14 Gm2a (MGP_PahariEiJ_G0017502) #15 Slc36a3 (MGP_PahariEiJ_G0017503) #16 MGP_PahariEiJ_G0017504 #17 Slc36a1 (MGP_PahariEiJ_G0017505) #18 Fat2 (MGP_PahariEiJ_G0017506) #19 Sparc (MGP_PahariEiJ_G0017507) #20 Atox1 (MGP_PahariEiJ_G0017508) #21 G3bp1 (MGP_PahariEiJ_G0017509) #22 Glra1 (MGP_PahariEiJ_G0017510) #23 Nmur2 (MGP_PahariEiJ_G0017511) #24 Gria1 (MGP_PahariEiJ_G0017512) Fam114a2 (MGP_PahariEiJ_G0017513) Mfap3 (MGP_PahariEiJ_G0017514) Galnt10 (MGP_PahariEiJ_G0017515) Sap30l (MGP_PahariEiJ_G0017516) Hand1 (MGP_PahariEiJ_G0017517) Larp1 (MGP_PahariEiJ_G0017518) Cnot8 (MGP_PahariEiJ_G0017519) Gemin5 (MGP_PahariEiJ_G0017520) Mrpl22 (MGP_PahariEiJ_G0017521) MGP_PahariEiJ_G0017522 MGP_PahariEiJ_G0017523 MGP_PahariEiJ_G0017524 Mus_A DUPLICATION Mus_A DUPLICATION Mus_A ANCESTRAL SPECIES 2 ENSGT00940000158124 #7 ENSGT00940000158245 #8 ENSGT00390000017923 #9 ENSGT00940000154451 #10 ENSGT00940000161754 #11 ENSGT00510000046908.a.a.a #12 ENSGT00940000158770 #13 ENSGT00950000183026.A.a.b #14 ENSGT00390000003288 #15 ENSGT00940000162406 #16 ENSGT00940000162044 #17 ENSGT00940000156583 #18 ENSGT00940000158507 #19 ENSGT00510000046787.e.b #20 ENSGT00940000162517 #21 ENSGT00390000011365.a.sb.a #22 ENSGT00940000159047 #23 ENSGT01100000263484.A.d #24 ENSGT00940000157342 ENSGT00390000010054.a ENSGT00390000011576.b ENSGT00940000156690 ENSGT00390000006633.a ENSGT00940000161111 ENSGT00940000159577 ENSGT00950000183345 ENSGT00940000157328.C ENSGT00390000000080.a.b.n ENSGT00620000088064 ENSGT00390000002110 ENSGT00950000183007.a.b.g.b.d.a Ryukyu mouse MODERN SPECIES 2 Rapgef6 (MGP_CAROLIEiJ_G0016359) #7 Cdc42se2 (MGP_CAROLIEiJ_G0016360) #8 Lyrm7 (MGP_CAROLIEiJ_G0016361) #9 Hint1 (MGP_CAROLIEiJ_G0016362) #10 MGP_CAROLIEiJ_G0016363 #11 Tnip1 (MGP_CAROLIEiJ_G0016364) #12 Anxa6 (MGP_CAROLIEiJ_G0016365) #13 Ccdc69 (MGP_CAROLIEiJ_G0016366) #14 Gm2a (MGP_CAROLIEiJ_G0016367) #15 Slc36a3 (MGP_CAROLIEiJ_G0016368) #16 Slc36a2 (MGP_CAROLIEiJ_G0016369) #17 Slc36a1 (MGP_CAROLIEiJ_G0016370) #18 Fat2 (MGP_CAROLIEiJ_G0016371) #19 Sparc (MGP_CAROLIEiJ_G0016372) #20 Atox1 (MGP_CAROLIEiJ_G0016373) #21 G3bp1 (MGP_CAROLIEiJ_G0016374) #22 Glra1 (MGP_CAROLIEiJ_G0016375) #23 Nmur2 (MGP_CAROLIEiJ_G0016376) #24 Gria1 (MGP_CAROLIEiJ_G0016377) Fam114a2 (MGP_CAROLIEiJ_G0016378) Mfap3 (MGP_CAROLIEiJ_G0016379) Galnt10 (MGP_CAROLIEiJ_G0016380) Sap30l (MGP_CAROLIEiJ_G0016381) Hand1 (MGP_CAROLIEiJ_G0016382) Larp1 (MGP_CAROLIEiJ_G0016383) Cnot8 (MGP_CAROLIEiJ_G0016384) Gemin5 (MGP_CAROLIEiJ_G0016385) Mrpl22 (MGP_CAROLIEiJ_G0016386) MGP_CAROLIEiJ_G0016387 MGP_CAROLIEiJ_G0016388 MGP_CAROLIEiJ_G0016389 Mus_B ANCESTRAL SPECIES 2 ENSGT00940000158124 #7 ENSGT00940000158245 #8 ENSGT00390000017923 #9 ENSGT00940000154451 #10 ENSGT00940000161754 #11 ENSGT00510000046908.a.a.a #12 ENSGT00940000158770 #13 ENSGT00950000183026.A.a.b #14 ENSGT00390000003288 #15 ENSGT00940000162406 #16 ENSGT00940000162044 #17 ENSGT00940000156583 #18 ENSGT00940000158507 #19 ENSGT00510000046787.e.b #20 ENSGT00940000162517 #21 ENSGT00390000011365.a.sb.a #22 ENSGT00940000159047 #23 ENSGT01100000263484.A.d #24 ENSGT00940000157342 ENSGT00390000010054.a ENSGT00390000011576.b ENSGT00940000156690 ENSGT00390000006633.a ENSGT00940000161111 ENSGT00940000159577 ENSGT00950000183345 ENSGT00940000157328.C ENSGT00390000000080.a.b.n ENSGT00620000088064 ENSGT00390000002110 ENSGT00950000183007.a.b.g.b.d.a Mouse MODERN SPECIES 2 Rapgef6 (ENSMUSG00000037533) #7 Cdc42se2 (ENSMUSG00000052298) #8 Lyrm7 (ENSMUSG00000020268) #9 Hint1 (ENSMUSG00000020267) #10 Gpx3 (ENSMUSG00000018339) #11 Tnip1 (ENSMUSG00000020400) #12 Anxa6 (ENSMUSG00000018340) #13 Ccdc69 (ENSMUSG00000049588) #14 Gm2a (ENSMUSG00000000594) #15 Slc36a3 (ENSMUSG00000049491) #16 Slc36a2 (ENSMUSG00000020264) #17 Slc36a1 (ENSMUSG00000020261) #18 Fat2 (ENSMUSG00000055333) #19 Sparc (ENSMUSG00000018593) #20 Atox1 (ENSMUSG00000018585) #21 G3bp1 (ENSMUSG00000018583) #22 Glra1 (ENSMUSG00000000263) #23 Nmur2 (ENSMUSG00000037393) #24 Gria1 (ENSMUSG00000020524) Fam114a2 (ENSMUSG00000020523) Mfap3 (ENSMUSG00000020522) Galnt10 (ENSMUSG00000020520) Sap30l (ENSMUSG00000020519) Hand1 (ENSMUSG00000037335) Larp1 (ENSMUSG00000037331) Gm12248 (ENSMUSG00000086962) Cnot8 (ENSMUSG00000020515) Gemin5 (ENSMUSG00000037275) Mrpl22 (ENSMUSG00000020514) Igtp (ENSMUSG00000078853) Irgm2 (ENSMUSG00000069874) Mus_C ANCESTRAL SPECIES 3 ENSGT00940000158124 #7 ENSGT00940000158245 #8 ENSGT00390000017923 #9 ENSGT00940000154451 #10 ENSGT00940000161754 #11 ENSGT00510000046908.a.a.a #12 ENSGT00940000158770 #13 ENSGT00950000183026.A.a.b #14 ENSGT00390000003288 #15 ENSGT00940000162406 #16 ENSGT00940000162044 #17 ENSGT00940000156583 #18 ENSGT00940000158507 #19 ENSGT00510000046787.e.b #20 ENSGT00940000162517 #21 ENSGT00390000011365.a.sb.a #22 ENSGT00940000159047 #23 ENSGT01100000263484.A.d #24 ENSGT00940000157342 ENSGT00390000010054.a ENSGT00390000011576.b ENSGT00940000156690 ENSGT00390000006633.a ENSGT00940000161111 ENSGT00940000159577 ENSGT00950000183345 ENSGT00940000157328.C ENSGT00390000000080.a.b.m ENSGT00390000000080.a.b.n ENSGT00620000088064 ENSGT00390000002110 Steppe mouse MODERN SPECIES 3255 Cdc42se2 (ENSMSIG00000008050) #8 ENSMSIG00000008083 #9 Hint1 (ENSMSIG00000008122) #10 Tnip1 (ENSMSIG00000008139) #12 Gpx3 (ENSMSIG00000008214) #11 Anxa6 (ENSMSIG00000008219) #13 ENSMSIG00000008354 Ccdc69 (ENSMSIG00000008369) #14 Gm2a (ENSMSIG00000008397) #15 Slc36a3 (ENSMSIG00000008419) #16 Slc36a2 (ENSMSIG00000008457) #17 Slc36a1 (ENSMSIG00000008490) #18 Fat2 (ENSMSIG00000008649) #19 ENSMSIG00000008765 #20 Atox1 (ENSMSIG00000008896) #21 G3bp1 (ENSMSIG00000008913) #22 Glra1 (ENSMSIG00000008952) #23 Nmur2 (ENSMSIG00000009215) #24 spretus MODERN SPECIES 2 Rapgef6 (MGP_SPRETEiJ_G0017201) #7 Cdc42se2 (MGP_SPRETEiJ_G0017202) #8 Lyrm7 (MGP_SPRETEiJ_G0017203) #9 Hint1 (MGP_SPRETEiJ_G0017204) #10 MGP_SPRETEiJ_G0017205 #11 Tnip1 (MGP_SPRETEiJ_G0017206) #12 Anxa6 (MGP_SPRETEiJ_G0017207) #13 Ccdc69 (MGP_SPRETEiJ_G0017208) #14 Gm2a (MGP_SPRETEiJ_G0017209) #15 Slc36a3 (MGP_SPRETEiJ_G0017210) #16 Slc36a2 (MGP_SPRETEiJ_G0017211) #17 Slc36a1 (MGP_SPRETEiJ_G0017212) #18 Fat2 (MGP_SPRETEiJ_G0017213) #19 Sparc (MGP_SPRETEiJ_G0017214) #20 Atox1 (MGP_SPRETEiJ_G0017215) #21 G3bp1 (MGP_SPRETEiJ_G0017216) #22 Glra1 (MGP_SPRETEiJ_G0017217) #23 Nmur2 (MGP_SPRETEiJ_G0017218) #24 Gria1 (MGP_SPRETEiJ_G0017219) Fam114a2 (MGP_SPRETEiJ_G0017220) Mfap3 (MGP_SPRETEiJ_G0017221) Galnt10 (MGP_SPRETEiJ_G0017222) Sap30l (MGP_SPRETEiJ_G0017223) Hand1 (MGP_SPRETEiJ_G0017224) Larp1 (MGP_SPRETEiJ_G0017225) Cnot8 (MGP_SPRETEiJ_G0017226) Gemin5 (MGP_SPRETEiJ_G0017227) Mrpl22 (MGP_SPRETEiJ_G0017228) Igtp (MGP_SPRETEiJ_G0017229) Irgm2 (MGP_SPRETEiJ_G0017230) MGP_SPRETEiJ_G0017231 Mus_A ANCESTRAL SPECIES ENSGT00390000011365.a.sb.b #22 Mus_B ANCESTRAL SPECIES ENSGT00390000011365.a.sb.b #22 Mus_C ANCESTRAL SPECIES ENSGT00390000011365.a.sb.b #22 Steppe mouse MODERN SPECIES 3308 Ncald (ENSMSIG00000015269) ENSMSIG00000015305 Grhl2 (ENSMSIG00000015315) ENSMSIG00000015430 #22 ENSMSIG00000015453 ENSMSIG00000015497 Ywhaz (ENSMSIG00000015504) ENSMSIG00000015546 ENSMSIG00000015548 Pabpc1 (ENSMSIG00000015570) Snx31 (ENSMSIG00000015612) ENSMSIG00000015663 Rnf19a (ENSMSIG00000015703) Spag1 (ENSMSIG00000015763) ENSMSIG00000015808 Fbxo43 (ENSMSIG00000015840) Rgs22 (ENSMSIG00000015850) ENSMSIG00000015927 Cox6c (ENSMSIG00000015963) Mus_A ANCESTRAL SPECIES ENSGT00390000011365.a.tb #22 Mus_B ANCESTRAL SPECIES ENSGT00390000011365.a.tb #22 Mus_C ANCESTRAL SPECIES ENSGT00390000011365.a.tb #22 Steppe mouse MODERN SPECIES 3164 ENSMSIG00000010609 #22 ENSMSIG00000010588 Rat DUPLICATION Rat MODERN SPECIES 1 Rapgef6 (ENSRNOG00000009995) #7 Cdc42se2-ps1 (ENSRNOG00000042449) #8 Lyrm7 (ENSRNOG00000045961) #9 Tnip1 (ENSRNOG00000010370) #12 Anxa6 (ENSRNOG00000010668) #13 LOC100362400 (ENSRNOG00000064427) Ybx1-ps20 (ENSRNOG00000032902) Ccdc69 (ENSRNOG00000021370) #14 Gm2a (ENSRNOG00000052219) #15 Slc36a3 (ENSRNOG00000021310) #16 Slc36a2 (ENSRNOG00000011892) #17 Slc36a1 (ENSRNOG00000012356) #18 Fat2 (ENSRNOG00000012575) #19 Sparc (ENSRNOG00000012840) #20 Atox1 (ENSRNOG00000013118) #21 G3bp1 (ENSRNOG00000013186) #22 Glra1 (ENSRNOG00000013588) #23 RGD1563668 (ENSRNOG00000038478) Nmur2 (ENSRNOG00000014081) #24 LOC102552619 (ENSRNOG00000027803) LOC120095104 (ENSRNOG00000062939) LOC102552882 (ENSRNOG00000038474) ENSRNOG00000069020 Gria1 (ENSRNOG00000045816) Fam114a2 (ENSRNOG00000002423) Mfap3 (ENSRNOG00000002443) Galnt10 (ENSRNOG00000002488) Sap30l (ENSRNOG00000002575) Hand1 (ENSRNOG00000002582) Larp1 (ENSRNOG00000031544) Atp5mk-ps2 (ENSRNOG00000042869) Rat MODERN SPECIES 14 LOC120102505 (ENSRNOG00000042804) Grm7 (ENSRNOG00000005662) Edem1 (ENSRNOG00000055365) Arl8b (ENSRNOG00000055860) Bhlhe40 (ENSRNOG00000007152) AABR07061707.1 (ENSRNOG00000052718) Itpr1 (ENSRNOG00000007104) Sumf1 (ENSRNOG00000006813) Setmar (ENSRNOG00000006806) Lrrn1 (ENSRNOG00000006802) Crbn (ENSRNOG00000006534) Trnt1 (ENSRNOG00000006432) Il5ra (ENSRNOG00000005954) Cntn4 (ENSRNOG00000005652) Cntn6 (ENSRNOG00000032517) AABR07061614.1 (ENSRNOG00000032820) #22 ENSRNOG00000065903 Chl1 (ENSRNOG00000045771) Cntn3 (ENSRNOG00000006144) Pdzrn3 (ENSRNOG00000057556) Ppp4r2 (ENSRNOG00000024647) Gxylt2 (ENSRNOG00000005621) Actg1-ps9 (ENSRNOG00000062691) Shq1 (ENSRNOG00000005433) LOC120102351 (ENSRNOG00000005353) LOC120102174 (ENSRNOG00000033673) Prok2 (ENSRNOG00000010898) Ier3ip1-ps1 (ENSRNOG00000030004) Gpr27 (ENSRNOG00000010880) Eif4e3 (ENSRNOG00000010301) Foxp1 (ENSRNOG00000009184)