Murinae	ANCESTRAL SPECIES	3	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Rat	MODERN SPECIES	18	Cilp (ENSRNOG00000029911) #7	Parp16 (ENSRNOG00000029127) #8	ENSRNOG00000063066 #9	Igdcc3 (ENSRNOG00000030800) #10	Igdcc4 (ENSRNOG00000033496) #11	Dpp8 (ENSRNOG00000019105) #12	Hacd3 (ENSRNOG00000030232) #13	Ints14 (ENSRNOG00000012469) #14	Slc24a1 (ENSRNOG00000052051) #15	Dennd4a (ENSRNOG00000011739) #16	LOC120094392 (ENSRNOG00000071140) #17	Rab11a (ENSRNOG00000011302) #18	Megf11 (ENSRNOG00000010634) #19	Dis3l (ENSRNOG00000010537) #20	Tipin (ENSRNOG00000043068) #21	Map2k1 (ENSRNOG00000010176) #22	Rpl4 (ENSRNOG00000009378) #23	Zwilch (ENSRNOG00000009303) #24	Lctl (ENSRNOG00000009193) #25	Smad6 (ENSRNOG00000009173) #26	Smad3 (ENSRNOG00000008620) #27	Aagab (ENSRNOG00000008424) #28	Iqch (ENSRNOG00000008353) #29	C8h15orf61 (ENSRNOG00000008340) #30	AC132740.1 (ENSRNOG00000054780) #31	Map2k5 (ENSRNOG00000007926) #32	Skor1 (ENSRNOG00000013959) #33	Pias1 (ENSRNOG00000034272) #34	Calml4 (ENSRNOG00000038202) #35	Cln6 (ENSRNOG00000007164) #36	Fem1b (ENSRNOG00000007077) #37
Mus	ANCESTRAL SPECIES	4	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Mus_A	ANCESTRAL SPECIES	4	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Mus_B	ANCESTRAL SPECIES	3	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000154925.c.a	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859.e.b #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Mouse	MODERN SPECIES	18	Clpx (ENSMUSG00000015357)	Cilp (ENSMUSG00000042254) #7	Parp16 (ENSMUSG00000032392) #8	Igdcc3 (ENSMUSG00000032394) #10	Igdcc4 (ENSMUSG00000032816) #11	Dpp8 (ENSMUSG00000032393) #12	Hacd3 (ENSMUSG00000033629) #13	Ints14 (ENSMUSG00000034263) #14	Slc24a1 (ENSMUSG00000034452) #15	Dennd4a (ENSMUSG00000053641) #16	Rab11a (ENSMUSG00000004771) #18	Megf11 (ENSMUSG00000036466) #19	Dis3l (ENSMUSG00000032396) #20	Tipin (ENSMUSG00000032397) #21	Uchl4 (ENSMUSG00000035337)	Map2k1 (ENSMUSG00000004936) #22	Snapc5 (ENSMUSG00000032398)	Rpl4 (ENSMUSG00000032399) #23	Zwilch (ENSMUSG00000032400) #24	Lctl (ENSMUSG00000032401) #25	Smad6 (ENSMUSG00000036867) #26	Smad3 (ENSMUSG00000032402) #27	Aagab (ENSMUSG00000037257) #28	Iqch (ENSMUSG00000037801) #29	2300009A05Rik (ENSMUSG00000032403) #30	Map2k5 (ENSMUSG00000058444) #32	Skor1 (ENSMUSG00000022245) #33	Pias1 (ENSMUSG00000032405) #34	Calml4 (ENSMUSG00000032246) #35	Cln6 (ENSMUSG00000032245) #36	Fem1b (ENSMUSG00000032244) #37
Mus_C	ANCESTRAL SPECIES	8	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000154925.c.a	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859.e.b #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Steppe mouse	MODERN SPECIES	3365	Clpx (ENSMSIG00000005427)	Cilp (ENSMSIG00000005391) #7	Parp16 (ENSMSIG00000005362) #8	Igdcc3 (ENSMSIG00000005288) #10	Igdcc4 (ENSMSIG00000005197) #11	Dpp8 (ENSMSIG00000005153) #12	Hacd3 (ENSMSIG00000005101) #13	Ints14 (ENSMSIG00000005077) #14	Slc24a1 (ENSMSIG00000005039) #15	Dennd4a (ENSMSIG00000004975) #16	Rab11a (ENSMSIG00000004938) #18	Megf11 (ENSMSIG00000004481) #19	Dis3l (ENSMSIG00000004353) #20	Tipin (ENSMSIG00000004296) #21	Uchl4 (ENSMSIG00000004289)	Map2k1 (ENSMSIG00000004246) #22	Snapc5 (ENSMSIG00000004231)	Rpl4 (ENSMSIG00000004124) #23	Zwilch (ENSMSIG00000003872) #24	Lctl (ENSMSIG00000003776) #25	ENSMSIG00000003769	ENSMSIG00000003749	Smad6 (ENSMSIG00000003718) #26	ENSMSIG00000003710	Smad3 (ENSMSIG00000003679) #27	Aagab (ENSMSIG00000003642) #28	ENSMSIG00000003630	Iqch (ENSMSIG00000002651) #29	2300009A05Rik (ENSMSIG00000002599) #30	Map2k5 (ENSMSIG00000002321) #32	Skor1 (ENSMSIG00000002179) #33
spretus	MODERN SPECIES	18	Clpx (MGP_SPRETEiJ_G0033495)	Cilp (MGP_SPRETEiJ_G0033494) #7	Parp16 (MGP_SPRETEiJ_G0033493) #8	Igdcc3 (MGP_SPRETEiJ_G0033492) #10	Igdcc4 (MGP_SPRETEiJ_G0033491) #11	Dpp8 (MGP_SPRETEiJ_G0033490) #12	Hacd3 (MGP_SPRETEiJ_G0033489) #13	Ints14 (MGP_SPRETEiJ_G0033488) #14	Slc24a1 (MGP_SPRETEiJ_G0033487) #15	Dennd4a (MGP_SPRETEiJ_G0033486) #16	Rab11a (MGP_SPRETEiJ_G0033485) #18	Megf11 (MGP_SPRETEiJ_G0033484) #19	Dis3l (MGP_SPRETEiJ_G0033483) #20	Tipin (MGP_SPRETEiJ_G0033482) #21	MGP_SPRETEiJ_G0033481	Map2k1 (MGP_SPRETEiJ_G0033480) #22	Snapc5 (MGP_SPRETEiJ_G0033479)	Rpl4 (MGP_SPRETEiJ_G0033478) #23	Zwilch (MGP_SPRETEiJ_G0033477) #24	Lctl (MGP_SPRETEiJ_G0033476) #25	Smad6 (MGP_SPRETEiJ_G0033475) #26	Smad3 (MGP_SPRETEiJ_G0033474) #27	Aagab (MGP_SPRETEiJ_G0033473) #28	Iqch (MGP_SPRETEiJ_G0033472) #29	2300009A05Rik (MGP_SPRETEiJ_G0033471) #30	Map2k5 (MGP_SPRETEiJ_G0033470) #32	Skor1 (MGP_SPRETEiJ_G0033469) #33	Pias1 (MGP_SPRETEiJ_G0033468) #34	Calml4 (MGP_SPRETEiJ_G0033467) #35	MGP_SPRETEiJ_G0033466	Cln6 (MGP_SPRETEiJ_G0033465) #36
Ryukyu mouse	MODERN SPECIES	18	Clpx (MGP_CAROLIEiJ_G0032356)	MGP_CAROLIEiJ_G0032355	Parp16 (MGP_CAROLIEiJ_G0032354) #8	Igdcc3 (MGP_CAROLIEiJ_G0032353) #10	Igdcc4 (MGP_CAROLIEiJ_G0032352) #11	Dpp8 (MGP_CAROLIEiJ_G0032351) #12	Hacd3 (MGP_CAROLIEiJ_G0032350) #13	Ints14 (MGP_CAROLIEiJ_G0032349) #14	Slc24a1 (MGP_CAROLIEiJ_G0032348) #15	Dennd4a (MGP_CAROLIEiJ_G0032347) #16	Rab11a (MGP_CAROLIEiJ_G0032346) #18	Megf11 (MGP_CAROLIEiJ_G0032345) #19	Dis3l (MGP_CAROLIEiJ_G0032344) #20	Tipin (MGP_CAROLIEiJ_G0032343) #21	MGP_CAROLIEiJ_G0032342	Map2k1 (MGP_CAROLIEiJ_G0032341) #22	Snapc5 (MGP_CAROLIEiJ_G0032340)	Rpl4 (MGP_CAROLIEiJ_G0032339) #23	Zwilch (MGP_CAROLIEiJ_G0032338) #24	Lctl (MGP_CAROLIEiJ_G0032337) #25	Smad6 (MGP_CAROLIEiJ_G0032336) #26	Smad3 (MGP_CAROLIEiJ_G0032335) #27	Aagab (MGP_CAROLIEiJ_G0032334) #28	Iqch (MGP_CAROLIEiJ_G0032333) #29	2300009A05Rik (MGP_CAROLIEiJ_G0032332) #30	Map2k5 (MGP_CAROLIEiJ_G0032331) #32	Skor1 (MGP_CAROLIEiJ_G0032330) #33	Pias1 (MGP_CAROLIEiJ_G0032329) #34	Calml4 (MGP_CAROLIEiJ_G0032328) #35	Cln6 (MGP_CAROLIEiJ_G0032327) #36	Fem1b (MGP_CAROLIEiJ_G0032326) #37
Shrew mouse	MODERN SPECIES	1	Pdcd7 (MGP_PahariEiJ_G0015222)	Clpx (MGP_PahariEiJ_G0015221)	MGP_PahariEiJ_G0015220	Parp16 (MGP_PahariEiJ_G0015219) #8	MGP_PahariEiJ_G0015218 #10	Igdcc4 (MGP_PahariEiJ_G0015217) #11	Dpp8 (MGP_PahariEiJ_G0015216) #12	Hacd3 (MGP_PahariEiJ_G0015215) #13	Ints14 (MGP_PahariEiJ_G0015214) #14	Slc24a1 (MGP_PahariEiJ_G0015213) #15	Dennd4a (MGP_PahariEiJ_G0015212) #16	Rab11a (MGP_PahariEiJ_G0015211) #18	Megf11 (MGP_PahariEiJ_G0015210) #19	Dis3l (MGP_PahariEiJ_G0015209) #20	Tipin (MGP_PahariEiJ_G0015208) #21	Map2k1 (MGP_PahariEiJ_G0015207) #22	Snapc5 (MGP_PahariEiJ_G0015206)	Rpl4 (MGP_PahariEiJ_G0015205) #23	Zwilch (MGP_PahariEiJ_G0015204) #24	Smad6 (MGP_PahariEiJ_G0015202) #26	Smad3 (MGP_PahariEiJ_G0015201) #27	Aagab (MGP_PahariEiJ_G0015200) #28	Iqch (MGP_PahariEiJ_G0015199) #29	2300009A05Rik (MGP_PahariEiJ_G0015198) #30	Map2k5 (MGP_PahariEiJ_G0015197) #32	Skor1 (MGP_PahariEiJ_G0015196) #33	Pias1 (MGP_PahariEiJ_G0015195) #34	Calml4 (MGP_PahariEiJ_G0015194) #35	MGP_PahariEiJ_G0015193	Fem1b (MGP_PahariEiJ_G0015192) #37	Itga11 (MGP_PahariEiJ_G0015191)