Euteleostomi	ANCESTRAL SPECIES	6	ENSGT00390000017828	ENSGT00390000018225.A	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000164138	ENSGT00940000155465
Sarcopterygii	ANCESTRAL SPECIES	9	ENSGT00390000017828	ENSGT00390000018225.A	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000164138	ENSGT00940000155465
Tetrapoda	ANCESTRAL SPECIES	11	ENSGT00390000018225.A	ENSGT00390000008152.B.b #7	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000164138	ENSGT00940000155465
Amniota	ANCESTRAL SPECIES	15	ENSGT00390000017828	ENSGT00390000008152.B.b #7	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Mammalia	ANCESTRAL SPECIES	28	ENSGT00940000160167	ENSGT00390000017828	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Theria	ANCESTRAL SPECIES	22	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Eutheria	ANCESTRAL SPECIES	8	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Boreoeutheria	ANCESTRAL SPECIES	3	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00910000147890	ENSGT00910000147041	ENSGT00940000158146 #26	ENSGT00860000136046	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00910000146962	ENSGT00960000188521	ENSGT00940000157505 #32
Euarchontoglires	ANCESTRAL SPECIES	3	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00910000147890	ENSGT00910000147041	ENSGT00940000158146 #26	ENSGT00860000136046	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00910000146962	ENSGT00940000157505 #32	ENSGT00940000158440 #33
Euarchontoglires_A	ANCESTRAL SPECIES	3	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Glires	ANCESTRAL SPECIES	15	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Rodentia	ANCESTRAL SPECIES	3	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Rodentia_B	ANCESTRAL SPECIES	11	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Myomorpha	ANCESTRAL SPECIES	25	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Muroidea	ANCESTRAL SPECIES	23	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Muroidea_A	ANCESTRAL SPECIES	6	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Murinae	ANCESTRAL SPECIES	3	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Rat	MODERN SPECIES	18	Cilp (ENSRNOG00000029911) #7	Parp16 (ENSRNOG00000029127) #8	ENSRNOG00000063066 #9	Igdcc3 (ENSRNOG00000030800) #10	Igdcc4 (ENSRNOG00000033496) #11	Dpp8 (ENSRNOG00000019105) #12	Hacd3 (ENSRNOG00000030232) #13	Ints14 (ENSRNOG00000012469) #14	Slc24a1 (ENSRNOG00000052051) #15	Dennd4a (ENSRNOG00000011739) #16	LOC120094392 (ENSRNOG00000071140) #17	Rab11a (ENSRNOG00000011302) #18	Megf11 (ENSRNOG00000010634) #19	Dis3l (ENSRNOG00000010537) #20	Tipin (ENSRNOG00000043068) #21	Map2k1 (ENSRNOG00000010176) #22	Rpl4 (ENSRNOG00000009378) #23	Zwilch (ENSRNOG00000009303) #24	Lctl (ENSRNOG00000009193) #25	Smad6 (ENSRNOG00000009173) #26	Smad3 (ENSRNOG00000008620) #27	Aagab (ENSRNOG00000008424) #28	Iqch (ENSRNOG00000008353) #29	C8h15orf61 (ENSRNOG00000008340) #30	AC132740.1 (ENSRNOG00000054780) #31	Map2k5 (ENSRNOG00000007926) #32	Skor1 (ENSRNOG00000013959) #33	Pias1 (ENSRNOG00000034272) #34	Calml4 (ENSRNOG00000038202) #35	Cln6 (ENSRNOG00000007164) #36	Fem1b (ENSRNOG00000007077) #37
Mus	ANCESTRAL SPECIES	4	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Mus_A	ANCESTRAL SPECIES	4	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Mus_B	ANCESTRAL SPECIES	3	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000154925.c.a	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859.e.b #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Mouse	MODERN SPECIES	18	Clpx (ENSMUSG00000015357)	Cilp (ENSMUSG00000042254) #7	Parp16 (ENSMUSG00000032392) #8	Igdcc3 (ENSMUSG00000032394) #10	Igdcc4 (ENSMUSG00000032816) #11	Dpp8 (ENSMUSG00000032393) #12	Hacd3 (ENSMUSG00000033629) #13	Ints14 (ENSMUSG00000034263) #14	Slc24a1 (ENSMUSG00000034452) #15	Dennd4a (ENSMUSG00000053641) #16	Rab11a (ENSMUSG00000004771) #18	Megf11 (ENSMUSG00000036466) #19	Dis3l (ENSMUSG00000032396) #20	Tipin (ENSMUSG00000032397) #21	Uchl4 (ENSMUSG00000035337)	Map2k1 (ENSMUSG00000004936) #22	Snapc5 (ENSMUSG00000032398)	Rpl4 (ENSMUSG00000032399) #23	Zwilch (ENSMUSG00000032400) #24	Lctl (ENSMUSG00000032401) #25	Smad6 (ENSMUSG00000036867) #26	Smad3 (ENSMUSG00000032402) #27	Aagab (ENSMUSG00000037257) #28	Iqch (ENSMUSG00000037801) #29	2300009A05Rik (ENSMUSG00000032403) #30	Map2k5 (ENSMUSG00000058444) #32	Skor1 (ENSMUSG00000022245) #33	Pias1 (ENSMUSG00000032405) #34	Calml4 (ENSMUSG00000032246) #35	Cln6 (ENSMUSG00000032245) #36	Fem1b (ENSMUSG00000032244) #37
Mus_C	ANCESTRAL SPECIES	8	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000154925.c.a	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859.e.b #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Steppe mouse	MODERN SPECIES	3365	Clpx (ENSMSIG00000005427)	Cilp (ENSMSIG00000005391) #7	Parp16 (ENSMSIG00000005362) #8	Igdcc3 (ENSMSIG00000005288) #10	Igdcc4 (ENSMSIG00000005197) #11	Dpp8 (ENSMSIG00000005153) #12	Hacd3 (ENSMSIG00000005101) #13	Ints14 (ENSMSIG00000005077) #14	Slc24a1 (ENSMSIG00000005039) #15	Dennd4a (ENSMSIG00000004975) #16	Rab11a (ENSMSIG00000004938) #18	Megf11 (ENSMSIG00000004481) #19	Dis3l (ENSMSIG00000004353) #20	Tipin (ENSMSIG00000004296) #21	Uchl4 (ENSMSIG00000004289)	Map2k1 (ENSMSIG00000004246) #22	Snapc5 (ENSMSIG00000004231)	Rpl4 (ENSMSIG00000004124) #23	Zwilch (ENSMSIG00000003872) #24	Lctl (ENSMSIG00000003776) #25	ENSMSIG00000003769	ENSMSIG00000003749	Smad6 (ENSMSIG00000003718) #26	ENSMSIG00000003710	Smad3 (ENSMSIG00000003679) #27	Aagab (ENSMSIG00000003642) #28	ENSMSIG00000003630	Iqch (ENSMSIG00000002651) #29	2300009A05Rik (ENSMSIG00000002599) #30	Map2k5 (ENSMSIG00000002321) #32	Skor1 (ENSMSIG00000002179) #33
spretus	MODERN SPECIES	18	Clpx (MGP_SPRETEiJ_G0033495)	Cilp (MGP_SPRETEiJ_G0033494) #7	Parp16 (MGP_SPRETEiJ_G0033493) #8	Igdcc3 (MGP_SPRETEiJ_G0033492) #10	Igdcc4 (MGP_SPRETEiJ_G0033491) #11	Dpp8 (MGP_SPRETEiJ_G0033490) #12	Hacd3 (MGP_SPRETEiJ_G0033489) #13	Ints14 (MGP_SPRETEiJ_G0033488) #14	Slc24a1 (MGP_SPRETEiJ_G0033487) #15	Dennd4a (MGP_SPRETEiJ_G0033486) #16	Rab11a (MGP_SPRETEiJ_G0033485) #18	Megf11 (MGP_SPRETEiJ_G0033484) #19	Dis3l (MGP_SPRETEiJ_G0033483) #20	Tipin (MGP_SPRETEiJ_G0033482) #21	MGP_SPRETEiJ_G0033481	Map2k1 (MGP_SPRETEiJ_G0033480) #22	Snapc5 (MGP_SPRETEiJ_G0033479)	Rpl4 (MGP_SPRETEiJ_G0033478) #23	Zwilch (MGP_SPRETEiJ_G0033477) #24	Lctl (MGP_SPRETEiJ_G0033476) #25	Smad6 (MGP_SPRETEiJ_G0033475) #26	Smad3 (MGP_SPRETEiJ_G0033474) #27	Aagab (MGP_SPRETEiJ_G0033473) #28	Iqch (MGP_SPRETEiJ_G0033472) #29	2300009A05Rik (MGP_SPRETEiJ_G0033471) #30	Map2k5 (MGP_SPRETEiJ_G0033470) #32	Skor1 (MGP_SPRETEiJ_G0033469) #33	Pias1 (MGP_SPRETEiJ_G0033468) #34	Calml4 (MGP_SPRETEiJ_G0033467) #35	MGP_SPRETEiJ_G0033466	Cln6 (MGP_SPRETEiJ_G0033465) #36
Ryukyu mouse	MODERN SPECIES	18	Clpx (MGP_CAROLIEiJ_G0032356)	MGP_CAROLIEiJ_G0032355	Parp16 (MGP_CAROLIEiJ_G0032354) #8	Igdcc3 (MGP_CAROLIEiJ_G0032353) #10	Igdcc4 (MGP_CAROLIEiJ_G0032352) #11	Dpp8 (MGP_CAROLIEiJ_G0032351) #12	Hacd3 (MGP_CAROLIEiJ_G0032350) #13	Ints14 (MGP_CAROLIEiJ_G0032349) #14	Slc24a1 (MGP_CAROLIEiJ_G0032348) #15	Dennd4a (MGP_CAROLIEiJ_G0032347) #16	Rab11a (MGP_CAROLIEiJ_G0032346) #18	Megf11 (MGP_CAROLIEiJ_G0032345) #19	Dis3l (MGP_CAROLIEiJ_G0032344) #20	Tipin (MGP_CAROLIEiJ_G0032343) #21	MGP_CAROLIEiJ_G0032342	Map2k1 (MGP_CAROLIEiJ_G0032341) #22	Snapc5 (MGP_CAROLIEiJ_G0032340)	Rpl4 (MGP_CAROLIEiJ_G0032339) #23	Zwilch (MGP_CAROLIEiJ_G0032338) #24	Lctl (MGP_CAROLIEiJ_G0032337) #25	Smad6 (MGP_CAROLIEiJ_G0032336) #26	Smad3 (MGP_CAROLIEiJ_G0032335) #27	Aagab (MGP_CAROLIEiJ_G0032334) #28	Iqch (MGP_CAROLIEiJ_G0032333) #29	2300009A05Rik (MGP_CAROLIEiJ_G0032332) #30	Map2k5 (MGP_CAROLIEiJ_G0032331) #32	Skor1 (MGP_CAROLIEiJ_G0032330) #33	Pias1 (MGP_CAROLIEiJ_G0032329) #34	Calml4 (MGP_CAROLIEiJ_G0032328) #35	Cln6 (MGP_CAROLIEiJ_G0032327) #36	Fem1b (MGP_CAROLIEiJ_G0032326) #37
Shrew mouse	MODERN SPECIES	1	Pdcd7 (MGP_PahariEiJ_G0015222)	Clpx (MGP_PahariEiJ_G0015221)	MGP_PahariEiJ_G0015220	Parp16 (MGP_PahariEiJ_G0015219) #8	MGP_PahariEiJ_G0015218 #10	Igdcc4 (MGP_PahariEiJ_G0015217) #11	Dpp8 (MGP_PahariEiJ_G0015216) #12	Hacd3 (MGP_PahariEiJ_G0015215) #13	Ints14 (MGP_PahariEiJ_G0015214) #14	Slc24a1 (MGP_PahariEiJ_G0015213) #15	Dennd4a (MGP_PahariEiJ_G0015212) #16	Rab11a (MGP_PahariEiJ_G0015211) #18	Megf11 (MGP_PahariEiJ_G0015210) #19	Dis3l (MGP_PahariEiJ_G0015209) #20	Tipin (MGP_PahariEiJ_G0015208) #21	Map2k1 (MGP_PahariEiJ_G0015207) #22	Snapc5 (MGP_PahariEiJ_G0015206)	Rpl4 (MGP_PahariEiJ_G0015205) #23	Zwilch (MGP_PahariEiJ_G0015204) #24	Smad6 (MGP_PahariEiJ_G0015202) #26	Smad3 (MGP_PahariEiJ_G0015201) #27	Aagab (MGP_PahariEiJ_G0015200) #28	Iqch (MGP_PahariEiJ_G0015199) #29	2300009A05Rik (MGP_PahariEiJ_G0015198) #30	Map2k5 (MGP_PahariEiJ_G0015197) #32	Skor1 (MGP_PahariEiJ_G0015196) #33	Pias1 (MGP_PahariEiJ_G0015195) #34	Calml4 (MGP_PahariEiJ_G0015194) #35	MGP_PahariEiJ_G0015193	Fem1b (MGP_PahariEiJ_G0015192) #37	Itga11 (MGP_PahariEiJ_G0015191)
Cricetidae	ANCESTRAL SPECIES	4	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Cricetidae_B	ANCESTRAL SPECIES	24	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Northern American deer mouse	MODERN SPECIES	20	Pdcd7 (ENSPEMG00000001830)	Clpx (ENSPEMG00000021528)	Cilp (ENSPEMG00000021273) #7	Parp16 (ENSPEMG00000022071) #8	Igdcc3 (ENSPEMG00000021097) #10	Igdcc4 (ENSPEMG00000020857) #11	Dpp8 (ENSPEMG00000024195) #12	Hacd3 (ENSPEMG00000008076) #13	Ints14 (ENSPEMG00000008550) #14	Slc24a1 (ENSPEMG00000022814) #15	Dennd4a (ENSPEMG00000022452) #16	ENSPEMG00000021125 #18	Megf11 (ENSPEMG00000017797) #19	Dis3l (ENSPEMG00000001213) #20	Tipin (ENSPEMG00000002370) #21	Map2k1 (ENSPEMG00000007282) #22	Snapc5 (ENSPEMG00000007852)	Rpl4 (ENSPEMG00000012064) #23	Zwilch (ENSPEMG00000014485) #24	Lctl (ENSPEMG00000016229) #25	Smad6 (ENSPEMG00000017040) #26	Smad3 (ENSPEMG00000028676) #27	Aagab (ENSPEMG00000018465) #28	ENSPEMG00000028831	Iqch (ENSPEMG00000005753) #29	2300009A05Rik (ENSPEMG00000009306) #30	Map2k5 (ENSPEMG00000010361) #32	Skor1 (ENSPEMG00000010499) #33	Pias1 (ENSPEMG00000012119) #34	Calml4 (ENSPEMG00000012833) #35	Cln6 (ENSPEMG00000030484) #36
Prairie vole	MODERN SPECIES	13	Pdcd7 (ENSMOCG00000007159)	Clpx (ENSMOCG00000011980)	Cilp (ENSMOCG00000022194) #7	Parp16 (ENSMOCG00000014635) #8	Igdcc3 (ENSMOCG00000017628) #10	Igdcc4 (ENSMOCG00000017733) #11	Dpp8 (ENSMOCG00000018103) #12	Hacd3 (ENSMOCG00000004995) #13	Ints14 (ENSMOCG00000020364) #14	Slc24a1 (ENSMOCG00000002968) #15	Dennd4a (ENSMOCG00000008521) #16	Rab11a (ENSMOCG00000021138) #18	Megf11 (ENSMOCG00000003573) #19	Dis3l (ENSMOCG00000005278) #20	Tipin (ENSMOCG00000010343) #21	Map2k1 (ENSMOCG00000013072) #22	Snapc5 (ENSMOCG00000015348)	ENSMOCG00000021901 #23	Zwilch (ENSMOCG00000017159) #24	Lctl (ENSMOCG00000004744) #25	Smad6 (ENSMOCG00000014458) #26	Smad3 (ENSMOCG00000018490) #27	Aagab (ENSMOCG00000021340) #28	Iqch (ENSMOCG00000016873) #29	2300009A05Rik (ENSMOCG00000013991) #30	Map2k5 (ENSMOCG00000022058) #32	Skor1 (ENSMOCG00000018261) #33	ENSMOCG00000019235	Pias1 (ENSMOCG00000022074) #34	Calml4 (ENSMOCG00000018493) #35	Cln6 (ENSMOCG00000021992) #36
Cricetinae	ANCESTRAL SPECIES	6	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145.kb #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Golden Hamster	MODERN SPECIES	672	Clpx (ENSMAUG00000018798)	ENSMAUG00000009833	Cilp (ENSMAUG00000019346) #7	Parp16 (ENSMAUG00000014432) #8	Igdcc3 (ENSMAUG00000019761) #10	Igdcc4 (ENSMAUG00000021589) #11	Dpp8 (ENSMAUG00000020059) #12	Hacd3 (ENSMAUG00000004278) #13	Ints14 (ENSMAUG00000020937) #14	Slc24a1 (ENSMAUG00000012813) #15	Dennd4a (ENSMAUG00000018527) #16	Rab11a (ENSMAUG00000018551) #18	Megf11 (ENSMAUG00000003129) #19	Dis3l (ENSMAUG00000008265) #20	Tipin (ENSMAUG00000012421) #21	Map2k1 (ENSMAUG00000011379) #22	Snapc5 (ENSMAUG00000008645)	Rpl4 (ENSMAUG00000018867) #23	Zwilch (ENSMAUG00000021210) #24	Lctl (ENSMAUG00000009957) #25	Smad6 (ENSMAUG00000009859) #26	Smad3 (ENSMAUG00000022258) #27	Aagab (ENSMAUG00000005383) #28	Iqch (ENSMAUG00000004333) #29	Map2k5 (ENSMAUG00000015370) #32	Skor1 (ENSMAUG00000020780) #33	Pias1 (ENSMAUG00000000785) #34	Calml4 (ENSMAUG00000015006) #35	Cln6 (ENSMAUG00000009546) #36	Itga11 (ENSMAUG00000002222)	Coro2b (ENSMAUG00000009618)
Upper Galilee mountains blind mole rat	MODERN SPECIES	955	Pdcd7 (ENSNGAG00000018415)	Clpx (ENSNGAG00000001488)	Cilp (ENSNGAG00000019472) #7	Parp16 (ENSNGAG00000004884) #8	Igdcc3 (ENSNGAG00000012915) #10	Igdcc4 (ENSNGAG00000022064) #11	Dpp8 (ENSNGAG00000019579) #12	Hacd3 (ENSNGAG00000016924) #13	Ints14 (ENSNGAG00000007105) #14	Slc24a1 (ENSNGAG00000010674) #15	ENSNGAG00000022619 #16	Rab11a (ENSNGAG00000013726) #18	Megf11 (ENSNGAG00000011352) #19	Dis3l (ENSNGAG00000017008) #20	Tipin (ENSNGAG00000018237) #21	Map2k1 (ENSNGAG00000006894) #22	Snapc5 (ENSNGAG00000006133)	ENSNGAG00000006653 #23	Zwilch (ENSNGAG00000016626) #24	Lctl (ENSNGAG00000012911) #25	Smad6 (ENSNGAG00000021223) #26	ENSNGAG00000022756	Smad3 (ENSNGAG00000023535) #27	ENSNGAG00000010708 #28	Iqch (ENSNGAG00000019505) #29	2300009A05Rik (ENSNGAG00000004715) #30	Map2k5 (ENSNGAG00000011076) #32	Skor1 (ENSNGAG00000020060) #33	Pias1 (ENSNGAG00000022735) #34	Calml4 (ENSNGAG00000016088) #35	Cln6 (ENSNGAG00000023832) #36
Lesser Egyptian jerboa	MODERN SPECIES	92	Clpx (ENSJJAG00000012714)	Cilp (ENSJJAG00000012559) #7	Parp16 (ENSJJAG00000019303) #8	Igdcc3 (ENSJJAG00000010487) #10	Igdcc4 (ENSJJAG00000022092) #11	Dpp8 (ENSJJAG00000018252) #12	Hacd3 (ENSJJAG00000016608) #13	Ints14 (ENSJJAG00000005359) #14	Slc24a1 (ENSJJAG00000009344) #15	ENSJJAG00000012113 #16	ENSJJAG00000015445 #18	Megf11 (ENSJJAG00000023890) #19	ENSJJAG00000019234	Dis3l (ENSJJAG00000016147) #20	Tipin (ENSJJAG00000017947) #21	Map2k1 (ENSJJAG00000021452) #22	Snapc5 (ENSJJAG00000022013)	ENSJJAG00000013677 #23	Zwilch (ENSJJAG00000010189) #24	Lctl (ENSJJAG00000013579) #25	Smad6 (ENSJJAG00000019623) #26	Smad3 (ENSJJAG00000021414) #27	ENSJJAG00000018312 #28	Iqch (ENSJJAG00000024416) #29	2300009A05Rik (ENSJJAG00000019436) #30	Map2k5 (ENSJJAG00000024208) #32	Skor1 (ENSJJAG00000003624) #33	ENSJJAG00000019728 #34	Calml4 (ENSJJAG00000014113) #35	Cln6 (ENSJJAG00000024405) #36	Fem1b (ENSJJAG00000018686) #37
Kangaroo rat	MODERN SPECIES	330	Pdcd7 (ENSDORG00000008214)	Clpx (ENSDORG00000016116)	Cilp (ENSDORG00000014410) #7	Parp16 (ENSDORG00000028265) #8	Igdcc4 (ENSDORG00000015148) #11	Dpp8 (ENSDORG00000009050) #12	Hacd3 (ENSDORG00000009307) #13	Ints14 (ENSDORG00000009309) #14	Slc24a1 (ENSDORG00000007185) #15	Dennd4a (ENSDORG00000002146) #16	ENSDORG00000028034 #18	ENSDORG00000026125	Megf11 (ENSDORG00000001008) #19	Dis3l (ENSDORG00000014909) #20	Tipin (ENSDORG00000028988) #21	Map2k1 (ENSDORG00000001301) #22	Snapc5 (ENSDORG00000030051)	Rpl4 (ENSDORG00000016287) #23	Zwilch (ENSDORG00000016288) #24	Lctl (ENSDORG00000016291) #25	Smad6 (ENSDORG00000028234) #26	ENSDORG00000026894	Smad3 (ENSDORG00000029949) #27	ENSDORG00000026611 #28	Iqch (ENSDORG00000006468) #29	2300009A05Rik (ENSDORG00000028687) #30	Map2k5 (ENSDORG00000005673) #32	Skor1 (ENSDORG00000005677) #33
Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Sciuridae	ANCESTRAL SPECIES	11	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Marmotini	ANCESTRAL SPECIES	9	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Alpin marmot	MODERN SPECIES	7	CLPX (ENSMMMG00000007193)	CILP (ENSMMMG00000007122) #7	PARP16 (ENSMMMG00000007101) #8	IGDCC3 (ENSMMMG00000007025) #10	IGDCC4 (ENSMMMG00000006948) #11	DPP8 (ENSMMMG00000006899) #12	HACD3 (ENSMMMG00000006884) #13	INTS14 (ENSMMMG00000006868) #14	SLC24A1 (ENSMMMG00000006817) #15	DENND4A (ENSMMMG00000006769) #16	ENSMMMG00000006762	RAB11A (ENSMMMG00000006747) #18	MEGF11 (ENSMMMG00000006311) #19	DIS3L (ENSMMMG00000006220) #20	TIPIN (ENSMMMG00000006196) #21	MAP2K1 (ENSMMMG00000006173) #22	SNAPC5 (ENSMMMG00000006163)	RPL4 (ENSMMMG00000006109) #23	ENSMMMG00000006104	ZWILCH (ENSMMMG00000006077) #24	LCTL (ENSMMMG00000006061) #25	SMAD6 (ENSMMMG00000006032) #26	ENSMMMG00000006027	SMAD3 (ENSMMMG00000005977) #27	AAGAB (ENSMMMG00000005970) #28	IQCH (ENSMMMG00000005869) #29	ENSMMMG00000005844	MAP2K5 (ENSMMMG00000005809) #32	SKOR1 (ENSMMMG00000005773) #33	PIAS1 (ENSMMMG00000005733) #34	CALML4 (ENSMMMG00000005699) #35
Marmotini_b	ANCESTRAL SPECIES	4	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Squirrel	MODERN SPECIES	71	CLPX (ENSSTOG00000003763)	CILP (ENSSTOG00000026112) #7	PARP16 (ENSSTOG00000008979) #8	IGDCC3 (ENSSTOG00000023391) #10	IGDCC4 (ENSSTOG00000002189) #11	DPP8 (ENSSTOG00000002203) #12	ENSSTOG00000025872	HACD3 (ENSSTOG00000002211) #13	INTS14 (ENSSTOG00000002217) #14	SLC24A1 (ENSSTOG00000002228) #15	DENND4A (ENSSTOG00000026966) #16	RAB11A (ENSSTOG00000015255) #18	MEGF11 (ENSSTOG00000015258) #19	DIS3L (ENSSTOG00000009158) #20	TIPIN (ENSSTOG00000009182) #21	MAP2K1 (ENSSTOG00000009190) #22	SNAPC5 (ENSSTOG00000009201)	RPL4 (ENSSTOG00000009221) #23	ZWILCH (ENSSTOG00000009607) #24	LCTL (ENSSTOG00000028073) #25	SMAD6 (ENSSTOG00000000696) #26	SMAD3 (ENSSTOG00000010286) #27	AAGAB (ENSSTOG00000010291) #28	IQCH (ENSSTOG00000010299) #29	C15orf61 (ENSSTOG00000010312) #30	MAP2K5 (ENSSTOG00000010318) #32	SKOR1 (ENSSTOG00000002675) #33	PIAS1 (ENSSTOG00000015532) #34	CALML4 (ENSSTOG00000015539) #35	CLN6 (ENSSTOG00000015540) #36	FEM1B (ENSSTOG00000015544) #37
Arctic ground squirrel	MODERN SPECIES	397																MAP2K1 (ENSUPAG00010018149) #22	SNAPC5 (ENSUPAG00010018142)	RPL4 (ENSUPAG00010018119) #23	ZWILCH (ENSUPAG00010018079) #24	LCTL (ENSUPAG00010018063) #25	SMAD6 (ENSUPAG00010018050) #26	ENSUPAG00010018048	SMAD3 (ENSUPAG00010018010) #27	AAGAB (ENSUPAG00010018001) #28	IQCH (ENSUPAG00010017914) #29	C15orf61 (ENSUPAG00010017904) #30	MAP2K5 (ENSUPAG00010017819) #32	SKOR1 (ENSUPAG00010017792) #33	ENSUPAG00010017781	PIAS1 (ENSUPAG00010017772) #34	CALML4 (ENSUPAG00010017747) #35
Eurasian red squirrel	MODERN SPECIES	11	CILP (ENSSVLG00005022969) #7	PARP16 (ENSSVLG00005023083) #8	ENSSVLG00005023161	IGDCC3 (ENSSVLG00005023208) #10	IGDCC4 (ENSSVLG00005023281) #11	DPP8 (ENSSVLG00005023347) #12	ENSSVLG00005023642	HACD3 (ENSSVLG00005023708) #13	INTS14 (ENSSVLG00005023820) #14	SLC24A1 (ENSSVLG00005023979) #15	DENND4A (ENSSVLG00005024160) #16	RAB11A (ENSSVLG00005024246) #18	MEGF11 (ENSSVLG00005024351) #19	DIS3L (ENSSVLG00005024622) #20	TIPIN (ENSSVLG00005024668) #21	MAP2K1 (ENSSVLG00005024707) #22	SNAPC5 (ENSSVLG00005024729)	ENSSVLG00005024744 #23	ZWILCH (ENSSVLG00005024833) #24	LCTL (ENSSVLG00005024912) #25	SMAD6 (ENSSVLG00005024946) #26	ENSSVLG00005024968	SMAD3 (ENSSVLG00005024991) #27	AAGAB (ENSSVLG00005025018) #28	IQCH (ENSSVLG00005025085) #29	C15orf61 (ENSSVLG00005006592) #30	MAP2K5 (ENSSVLG00005006656) #32	SKOR1 (ENSSVLG00005006917) #33	PIAS1 (ENSSVLG00005007019) #34	CALML4 (ENSSVLG00005007109) #35	CLN6 (ENSSVLG00005007215) #36
Hystricomorpha	ANCESTRAL SPECIES	36	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145.vb #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Hystricomorpha_a	ANCESTRAL SPECIES	38	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145.vb #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Guinea pig	MODERN SPECIES	101	MINDY2 (ENSCPOG00000002287)	CLPX (ENSCPOG00000003391)	CILP (ENSCPOG00000036223) #7	PARP16 (ENSCPOG00000025232) #8	IGDCC3 (ENSCPOG00000006751) #10	IGDCC4 (ENSCPOG00000004519) #11	DPP8 (ENSCPOG00000014124) #12	HACD3 (ENSCPOG00000013593) #13	INTS14 (ENSCPOG00000000764) #14	SLC24A1 (ENSCPOG00000013596) #15	DENND4A (ENSCPOG00000013602) #16	RAB11A (ENSCPOG00000037599) #18	MEGF11 (ENSCPOG00000006468) #19	DIS3L (ENSCPOG00000000250) #20	TIPIN (ENSCPOG00000000251) #21	MAP2K1 (ENSCPOG00000003053) #22	RPL4 (ENSCPOG00000003055) #23	ZWILCH (ENSCPOG00000001241) #24	LCTL (ENSCPOG00000001245) #25	ENSCPOG00000026722	ENSCPOG00000003533	ENSCPOG00000013176	ENSCPOG00000015403
Hystricomorpha_b	ANCESTRAL SPECIES	35	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145.vb #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Long-tailed chinchilla	MODERN SPECIES	157	PDCD7 (ENSCLAG00000007922)	CLPX (ENSCLAG00000016601)	CILP (ENSCLAG00000014495) #7	PARP16 (ENSCLAG00000012092) #8	IGDCC3 (ENSCLAG00000010244) #10	IGDCC4 (ENSCLAG00000007751) #11	DPP8 (ENSCLAG00000014937) #12	HACD3 (ENSCLAG00000010725) #13	INTS14 (ENSCLAG00000009395) #14	SLC24A1 (ENSCLAG00000013073) #15	DENND4A (ENSCLAG00000007003) #16	RAB11A (ENSCLAG00000007435) #18	MEGF11 (ENSCLAG00000013146) #19	DIS3L (ENSCLAG00000005741) #20	TIPIN (ENSCLAG00000004924) #21	MAP2K1 (ENSCLAG00000013042) #22	SNAPC5 (ENSCLAG00000011660)	RPL4 (ENSCLAG00000010827) #23	ZWILCH (ENSCLAG00000010124) #24	LCTL (ENSCLAG00000004564) #25	ENSCLAG00000005550 #26	SMAD3 (ENSCLAG00000005027) #27	AAGAB (ENSCLAG00000008364) #28	IQCH (ENSCLAG00000011031) #29	C15orf61 (ENSCLAG00000008894) #30	MAP2K5 (ENSCLAG00000005277) #32	SKOR1 (ENSCLAG00000007488) #33	PIAS1 (ENSCLAG00000008129) #34	CALML4 (ENSCLAG00000008707) #35	CLN6 (ENSCLAG00000007035) #36	FEM1B (ENSCLAG00000004834) #37
Degu	MODERN SPECIES	67	CLPX (ENSODEG00000016361)	CILP (ENSODEG00000016085) #7	ENSODEG00000020368	PARP16 (ENSODEG00000016601) #8	IGDCC3 (ENSODEG00000016285) #10	IGDCC4 (ENSODEG00000016455) #11	DPP8 (ENSODEG00000016356) #12	HACD3 (ENSODEG00000016975) #13	INTS14 (ENSODEG00000017006) #14	SLC24A1 (ENSODEG00000016047) #15	ENSODEG00000016544 #16	ENSODEG00000016435	ENSODEG00000016878 #18	MEGF11 (ENSODEG00000015967) #19	DIS3L (ENSODEG00000015811) #20	MAP2K1 (ENSODEG00000016739) #22	ENSODEG00000016495 #23	ZWILCH (ENSODEG00000016374) #24	LCTL (ENSODEG00000016271) #25	ENSODEG00000020317	SMAD6 (ENSODEG00000016272) #26	SMAD3 (ENSODEG00000015739) #27	ENSODEG00000015886 #28	ENSODEG00000020336	IQCH (ENSODEG00000016134) #29	C15orf61 (ENSODEG00000016721) #30	ENSODEG00000016511	MAP2K5 (ENSODEG00000015607) #32	SKOR1 (ENSODEG00000015903) #33	PIAS1 (ENSODEG00000016418) #34	CALML4 (ENSODEG00000015441) #35
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	19	CILP (ENSHGLG00000011932) #7	PARP16 (ENSHGLG00000010657) #8	IGDCC3 (ENSHGLG00000006674) #10	IGDCC4 (ENSHGLG00000017462) #11	DPP8 (ENSHGLG00000014997) #12	HACD3 (ENSHGLG00000011870) #13	INTS14 (ENSHGLG00000010722) #14	SLC24A1 (ENSHGLG00000008872) #15	DENND4A (ENSHGLG00000009810) #16	ENSHGLG00000044288	RAB11A (ENSHGLG00000048551) #18	MEGF11 (ENSHGLG00000011012) #19	ENSHGLG00000007770 #20	ENSHGLG00000005971 #21	ENSHGLG00000048822	ENSHGLG00000010036 #22	ENSHGLG00000040904	ENSHGLG00000008054 #23	ZWILCH (ENSHGLG00000016059) #24	LCTL (ENSHGLG00000015669) #25	SMAD6 (ENSHGLG00000008453) #26	SMAD3 (ENSHGLG00000048787) #27	AAGAB (ENSHGLG00000038898) #28	ENSHGLG00000026352 #29	C15orf61 (ENSHGLG00000038870) #30	MAP2K5 (ENSHGLG00000006627) #32	SKOR1 (ENSHGLG00000017297) #33	Pias1 (ENSHGLG00000019002) #34	Calml4 (ENSHGLG00000018794) #35	CLN6 (ENSHGLG00000017958) #36	FEM1B (ENSHGLG00000017948) #37
Naked mole-rat female	MODERN SPECIES	17	WNK2 (ENSHGLG00000006602)	ENSHGLG00000011629	NINJ1 (ENSHGLG00000046840)	CARD19 (ENSHGLG00000036319)	SUSD3 (ENSHGLG00000017913)	FGD3 (ENSHGLG00000017946)	ENSHGLG00000033729	ENSHGLG00000036816	ENSHGLG00000040445	ENSHGLG00000046071	ECM2 (ENSHGLG00000008935)	ASPN (ENSHGLG00000010675)	ENSHGLG00000011071	ENSHGLG00000006659	ENSHGLG00000047003	ENSHGLG00000046096 #22	ENSHGLG00000038940	ENSHGLG00000009033	ENSHGLG00000007231	SPIN1 (ENSHGLG00000045201)	NXNL2 (ENSHGLG00000039721)	ENSHGLG00000032550	SHC3 (ENSHGLG00000009124)	CKS2 (ENSHGLG00000008721)	ENSHGLG00000014380	ENSHGLG00000008542	SEMA4D (ENSHGLG00000007257)	ENSHGLG00000006188	ENSHGLG00000004421	ENSHGLG00000012020	ENSHGLG00000036048
Lagomorpha	ANCESTRAL SPECIES	7	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00950000183167.a.b.a	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Pika	MODERN SPECIES	3201																MAP2K1 (ENSOPRG00000007770) #22	SNAPC5 (ENSOPRG00000007781)	RPL4 (ENSOPRG00000007792) #23	ZWILCH (ENSOPRG00000007811) #24	LCTL (ENSOPRG00000007843) #25
Rabbit	MODERN SPECIES	8	CLPX (ENSOCUG00000007293)	CILP (ENSOCUG00000007302) #7	PARP16 (ENSOCUG00000007306) #8	IGDCC3 (ENSOCUG00000000310) #10	IGDCC4 (ENSOCUG00000000312) #11	DPP8 (ENSOCUG00000011751) #12	HACD3 (ENSOCUG00000007513) #13	INTS14 (ENSOCUG00000007520) #14	ENSOCUG00000027844 #15	DENND4A (ENSOCUG00000007953) #16	RAB11A (ENSOCUG00000014755) #18	MEGF11 (ENSOCUG00000014760) #19	DIS3L (ENSOCUG00000002206) #20	TIPIN (ENSOCUG00000002212) #21	ENSOCUG00000023060	MAP2K1 (ENSOCUG00000008782) #22	SNAPC5 (ENSOCUG00000039231)	ENSOCUG00000008794 #23	ZWILCH (ENSOCUG00000008800) #24	LCTL (ENSOCUG00000021771) #25	ENSOCUG00000006134 #26	ENSOCUG00000014186	SMAD3 (ENSOCUG00000029601) #27	ENSOCUG00000039204	AAGAB (ENSOCUG00000006644) #28	IQCH (ENSOCUG00000006647) #29	MAP2K5 (ENSOCUG00000009024) #32	PIAS1 (ENSOCUG00000000618) #34	CLN6 (ENSOCUG00000017533) #36	FEM1B (ENSOCUG00000026586) #37	ITGA11 (ENSOCUG00000017726)
Tree shrew	MODERN SPECIES	3607																MAP2K1 (ENSTBEG00000014266) #22	ENSTBEG00000014333	RPL4 (ENSTBEG00000014392) #23	ZWILCH (ENSTBEG00000014432) #24	ENSTBEG00000014522 #25
Primates	ANCESTRAL SPECIES	2	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145.cb.a #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00910000147890	ENSGT00910000147041	ENSGT00940000158146 #26	ENSGT00860000136046	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00910000146962	ENSGT00940000157505 #32	ENSGT00940000158440 #33
Strepsirrhini	ANCESTRAL SPECIES	2	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145.cb.a #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Lemuriformes	ANCESTRAL SPECIES	8	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145.cb.a #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Lemuriformes_a	ANCESTRAL SPECIES	1	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00940000170330	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145.cb.a #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00910000147890
Greater bamboo lemur	MODERN SPECIES	1555															ENSPSMG00000011520 #21	MAP2K1 (ENSPSMG00000011609) #22	SNAPC5 (ENSPSMG00000011672)	RPL4 (ENSPSMG00000011682) #23	ZWILCH (ENSPSMG00000011752) #24	LCTL (ENSPSMG00000011790) #25	ENSPSMG00000011799
Coquerels sifaka	MODERN SPECIES	321	CLPX (ENSPCOG00000024478)	CILP (ENSPCOG00000019277) #7	PARP16 (ENSPCOG00000019309) #8	IGDCC3 (ENSPCOG00000012584) #10	IGDCC4 (ENSPCOG00000024000) #11	DPP8 (ENSPCOG00000013983) #12	HACD3 (ENSPCOG00000013603) #13	INTS14 (ENSPCOG00000022468) #14	SLC24A1 (ENSPCOG00000028227) #15	DENND4A (ENSPCOG00000015787) #16	ENSPCOG00000008655	MEGF11 (ENSPCOG00000016212) #19	ENSPCOG00000020947	DIS3L (ENSPCOG00000015776) #20	ENSPCOG00000024692	MAP2K1 (ENSPCOG00000019709) #22	SNAPC5 (ENSPCOG00000018513)	RPL4 (ENSPCOG00000018140) #23	ZWILCH (ENSPCOG00000014834) #24	LCTL (ENSPCOG00000018210) #25	AKAP4 (ENSPCOG00000016065)	CCNB3 (ENSPCOG00000017115)	DGKK (ENSPCOG00000003529)	SHROOM4 (ENSPCOG00000022223)
Mouse lemur	MODERN SPECIES	22	IGDCC3 (ENSMICG00000003513) #10	IGDCC4 (ENSMICG00000046639) #11	DPP8 (ENSMICG00000000049) #12	HACD3 (ENSMICG00000003985) #13	INTS14 (ENSMICG00000003990) #14	SLC24A1 (ENSMICG00000003996) #15	ENSMICG00000034025	ENSMICG00000028970	ENSMICG00000044235	DENND4A (ENSMICG00000004000) #16	RAB11A (ENSMICG00000041504) #18	ENSMICG00000035335	MEGF11 (ENSMICG00000004354) #19	DIS3L (ENSMICG00000004374) #20	TIPIN (ENSMICG00000004386) #21	MAP2K1 (ENSMICG00000004393) #22	SNAPC5 (ENSMICG00000004401)	RPL4 (ENSMICG00000004419) #23	ZWILCH (ENSMICG00000004429) #24	LCTL (ENSMICG00000004455) #25	SMAD6 (ENSMICG00000035205) #26	SMAD3 (ENSMICG00000006119) #27	AAGAB (ENSMICG00000044554) #28	IQCH (ENSMICG00000006127) #29	ENSMICG00000041604	ENSMICG00000005597	BLOC1S6 (ENSMICG00000005595)	SLC30A4 (ENSMICG00000005588)	C15orf48 (ENSMICG00000033332)	SPATA5L1 (ENSMICG00000035916)	GATM (ENSMICG00000005565)
Bushbaby	MODERN SPECIES	126	CILP (ENSOGAG00000033324) #7	PARP16 (ENSOGAG00000013641) #8	ENSOGAG00000027481	IGDCC3 (ENSOGAG00000013646) #10	IGDCC4 (ENSOGAG00000034827) #11	DPP8 (ENSOGAG00000013651) #12	HACD3 (ENSOGAG00000013661) #13	INTS14 (ENSOGAG00000013667) #14	SLC24A1 (ENSOGAG00000013674) #15	DENND4A (ENSOGAG00000013678) #16	RAB11A (ENSOGAG00000007642) #18	MEGF11 (ENSOGAG00000007644) #19	ENSOGAG00000034665	DIS3L (ENSOGAG00000024086) #20	ENSOGAG00000028488 #21	MAP2K1 (ENSOGAG00000015876) #22	SNAPC5 (ENSOGAG00000015881)	ENSOGAG00000015884 #23	ZWILCH (ENSOGAG00000015886) #24	LCTL (ENSOGAG00000015893) #25	SMAD6 (ENSOGAG00000015387) #26	ENSOGAG00000034467	ENSOGAG00000029245	SMAD3 (ENSOGAG00000014217) #27	AAGAB (ENSOGAG00000014219) #28	IQCH (ENSOGAG00000014224) #29	ENSOGAG00000028206	C15orf61 (ENSOGAG00000027440) #30	MAP2K5 (ENSOGAG00000002480) #32	SKOR1 (ENSOGAG00000025983) #33	PIAS1 (ENSOGAG00000014134) #34
Haplorrhini	ANCESTRAL SPECIES	17	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145.cb.a #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00910000147890	ENSGT00910000147041	ENSGT00940000158146 #26	ENSGT00860000136046	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00910000146962	ENSGT00940000157505 #32	ENSGT00940000158440 #33
Tarsier	MODERN SPECIES	1616																MAP2K1 (ENSTSYG00000005562) #22	SNAPC5 (ENSTSYG00000005582)	RPL4 (ENSTSYG00000005588) #23	ZWILCH (ENSTSYG00000005609) #24	LCTL (ENSTSYG00000009772) #25
Simiiformes	ANCESTRAL SPECIES	2	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764.g.a #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145.cb.a.a.a #23	ENSGT00390000013696 #24	ENSGT00910000147890	ENSGT00940000157369 #25	ENSGT00910000147041	ENSGT00940000158146 #26	ENSGT00860000136046	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00910000146962	ENSGT00940000157505 #32	ENSGT00940000158440 #33
Catarrhini	DUPLICATION
Catarrhini	DUPLICATION
Catarrhini	ANCESTRAL SPECIES	20	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764.g.a #21	ENSGT00940000153487.b.b.i.a #22	ENSGT00390000010331	ENSGT00390000018145.cb.a.a.a #23	ENSGT00390000013696 #24	ENSGT00910000147890	ENSGT00940000157369 #25	ENSGT00910000147041	ENSGT00940000158146 #26	ENSGT00860000136046	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00910000146962	ENSGT00940000157505 #32	ENSGT00940000158440 #33
Hominoidea	ANCESTRAL SPECIES	20	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764.g.a #21	ENSGT00940000153487.b.b.i.a #22	ENSGT00390000010331	ENSGT00390000018145.cb.a.b #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00860000136046	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00910000146962	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35
Hominidae	ANCESTRAL SPECIES	22	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764.g.a #21	ENSGT00940000153487.b.b.i.a #22	ENSGT00390000010331	ENSGT00390000018145.cb.a.b #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00860000136046	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00910000146962	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	22	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764.g.a #21	ENSGT00940000153487.b.b.i.a #22	ENSGT00390000010331	ENSGT00390000018145.cb.a.b.a.a #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00910000147041	ENSGT00860000136046	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00910000146962	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34
Homo/Pan group	ANCESTRAL SPECIES	21	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764.g.a #21	ENSGT00940000153487.b.b.i.a #22	ENSGT00390000010331	ENSGT00390000018145.cb.a.b.a.a #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00910000147041	ENSGT00860000136046	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00910000146962	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34
Pan	ANCESTRAL SPECIES	20	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764.g.a #21	ENSGT00510000046986.m.a	ENSGT00940000153487.b.b.i.a #22	ENSGT00390000010331	ENSGT00390000018145.cb.a.b.a.a #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00910000147041	ENSGT00860000136046	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00910000146962	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34
Chimpanzee	MODERN SPECIES	6	CLPX (ENSPTRG00000007176)	CILP (ENSPTRG00000007177) #7	PARP16 (ENSPTRG00000007178) #8	IGDCC3 (ENSPTRG00000007179) #10	IGDCC4 (ENSPTRG00000007180) #11	DPP8 (ENSPTRG00000007182) #12	HACD3 (ENSPTRG00000007183) #13	INTS14 (ENSPTRG00000007184) #14	SLC24A1 (ENSPTRG00000007185) #15	DENND4A (ENSPTRG00000007186) #16	RAB11A (ENSPTRG00000044358) #18	MEGF11 (ENSPTRG00000007189) #19	DIS3L (ENSPTRG00000007191) #20	TIPIN (ENSPTRG00000007192) #21	ENSPTRG00000051889	MAP2K1 (ENSPTRG00000007193) #22	ENSPTRG00000049603	SNAPC5 (ENSPTRG00000007194)	RPL4 (ENSPTRG00000007195) #23	ZWILCH (ENSPTRG00000007196) #24	LCTL (ENSPTRG00000007197) #25	SMAD6 (ENSPTRG00000007198) #26	ENSPTRG00000044014	ENSPTRG00000047146	SMAD3 (ENSPTRG00000007199) #27	AAGAB (ENSPTRG00000007202) #28	IQCH (ENSPTRG00000007205) #29	C15H15orf61 (ENSPTRG00000030250) #30	MAP2K5 (ENSPTRG00000007207) #32	ENSPTRG00000048990	SKOR1 (ENSPTRG00000007209) #33
Bonobo	MODERN SPECIES	6	CILP (ENSPPAG00000042751) #7	PARP16 (ENSPPAG00000030232) #8	IGDCC3 (ENSPPAG00000042057) #10	IGDCC4 (ENSPPAG00000036548) #11	DPP8 (ENSPPAG00000032419) #12	HACD3 (ENSPPAG00000014660) #13	INTS14 (ENSPPAG00000030391) #14	SLC24A1 (ENSPPAG00000042941) #15	DENND4A (ENSPPAG00000022752) #16	RAB11A (ENSPPAG00000030195) #18	MEGF11 (ENSPPAG00000043580) #19	DIS3L (ENSPPAG00000019888) #20	TIPIN (ENSPPAG00000033427) #21	ENSPPAG00000041842	ENSPPAG00000038145	MAP2K1 (ENSPPAG00000028577) #22	ENSPPAG00000033063	SNAPC5 (ENSPPAG00000041196)	ENSPPAG00000035309 #23	ZWILCH (ENSPPAG00000033861) #24	LCTL (ENSPPAG00000040836) #25	SMAD6 (ENSPPAG00000027722) #26	ENSPPAG00000036915	ENSPPAG00000020485	SMAD3 (ENSPPAG00000033769) #27	AAGAB (ENSPPAG00000041055) #28	IQCH (ENSPPAG00000042974) #29	C15orf61 (ENSPPAG00000026999) #30	MAP2K5 (ENSPPAG00000036945) #32	ENSPPAG00000033373	ENSPPAG00000036055 #33
Human	MODERN SPECIES	6	PDCD7 (ENSG00000090470)	CLPX (ENSG00000166855)	CILP (ENSG00000138615) #7	PARP16 (ENSG00000138617) #8	IGDCC3 (ENSG00000174498) #10	IGDCC4 (ENSG00000103742) #11	DPP8 (ENSG00000074603) #12	HACD3 (ENSG00000074696) #13	INTS14 (ENSG00000138614) #14	SLC24A1 (ENSG00000074621) #15	DENND4A (ENSG00000174485) #16	RAB11A (ENSG00000103769) #18	MEGF11 (ENSG00000157890) #19	DIS3L (ENSG00000166938) #20	TIPIN (ENSG00000075131) #21	MAP2K1 (ENSG00000169032) #22	SNAPC5 (ENSG00000174446)	RPL4 (ENSG00000174444) #23	ZWILCH (ENSG00000174442) #24	LCTL (ENSG00000188501) #25	SMAD6 (ENSG00000137834) #26	SMAD3 (ENSG00000166949) #27	AAGAB (ENSG00000103591) #28	IQCH (ENSG00000103599) #29	C15orf61 (ENSG00000189227) #30	MAP2K5 (ENSG00000137764) #32	SKOR1 (ENSG00000188779) #33	PIAS1 (ENSG00000033800) #34	ENSG00000260007	CALML4 (ENSG00000129007) #35	CLN6 (ENSG00000128973) #36
Gorilla	MODERN SPECIES	6	CILP (ENSGGOG00000042968) #7	PARP16 (ENSGGOG00000022851) #8	IGDCC3 (ENSGGOG00000010452) #10	IGDCC4 (ENSGGOG00000010463) #11	DPP8 (ENSGGOG00000012470) #12	HACD3 (ENSGGOG00000022837) #13	INTS14 (ENSGGOG00000003838) #14	SLC24A1 (ENSGGOG00000016389) #15	DENND4A (ENSGGOG00000014870) #16	ENSGGOG00000022841	RAB11A (ENSGGOG00000014252) #18	MEGF11 (ENSGGOG00000000293) #19	DIS3L (ENSGGOG00000001549) #20	TIPIN (ENSGGOG00000000061) #21	ENSGGOG00000024529	MAP2K1 (ENSGGOG00000003687) #22	ENSGGOG00000042752	SNAPC5 (ENSGGOG00000003693)	ENSGGOG00000003695 #23	ZWILCH (ENSGGOG00000003703) #24	LCTL (ENSGGOG00000006350) #25	SMAD6 (ENSGGOG00000013002) #26	ENSGGOG00000038329	ENSGGOG00000012045	ENSGGOG00000004714 #28	IQCH (ENSGGOG00000004722) #29	C15orf61 (ENSGGOG00000004732) #30	MAP2K5 (ENSGGOG00000004734) #32	ENSGGOG00000042211	ENSGGOG00000027762	ENSGGOG00000004743 #33
Orangutan	MODERN SPECIES	6	PDCD7 (ENSPPYG00000006562)	CLPX (ENSPPYG00000006563)	CILP (ENSPPYG00000006564) #7	PARP16 (ENSPPYG00000006565) #8	IGDCC3 (ENSPPYG00000006566) #10	IGDCC4 (ENSPPYG00000006567) #11	DPP8 (ENSPPYG00000006568) #12	HACD3 (ENSPPYG00000006569) #13	INTS14 (ENSPPYG00000006570) #14	SLC24A1 (ENSPPYG00000006571) #15	DENND4A (ENSPPYG00000006572) #16	RAB11A (ENSPPYG00000006573) #18	MEGF11 (ENSPPYG00000039385) #19	DIS3L (ENSPPYG00000006575) #20	TIPIN (ENSPPYG00000031745) #21	MAP2K1 (ENSPPYG00000006576) #22	ENSPPYG00000032290	SNAPC5 (ENSPPYG00000040277)	RPL4 (ENSPPYG00000006578) #23	ZWILCH (ENSPPYG00000006579) #24	LCTL (ENSPPYG00000006580) #25	ENSPPYG00000006581 #26	ENSPPYG00000006582	SMAD3 (ENSPPYG00000006583) #27	AAGAB (ENSPPYG00000006584) #28	IQCH (ENSPPYG00000006585) #29	C15orf61 (ENSPPYG00000006586) #30	MAP2K5 (ENSPPYG00000006587) #32	SKOR1 (ENSPPYG00000006588) #33	PIAS1 (ENSPPYG00000006589) #34	ENSPPYG00000006590 #35
Gibbon	MODERN SPECIES	21	CLPX (ENSNLEG00000012633)	CILP (ENSNLEG00000012638) #7	ENSNLEG00000034448	ENSNLEG00000012643 #8	IGDCC3 (ENSNLEG00000012651) #10	IGDCC4 (ENSNLEG00000012668) #11	DPP8 (ENSNLEG00000012689) #12	HACD3 (ENSNLEG00000012725) #13	INTS14 (ENSNLEG00000012745) #14	ENSNLEG00000012767 #15	DENND4A (ENSNLEG00000012772) #16	RAB11A (ENSNLEG00000012853) #18	MEGF11 (ENSNLEG00000012863) #19	DIS3L (ENSNLEG00000012891) #20	TIPIN (ENSNLEG00000012909) #21	MAP2K1 (ENSNLEG00000012913) #22	SNAPC5 (ENSNLEG00000033124)	ENSNLEG00000012938 #23	ZWILCH (ENSNLEG00000012950) #24	LCTL (ENSNLEG00000012956) #25	SMAD6 (ENSNLEG00000032864) #26	ENSNLEG00000028836	SMAD3 (ENSNLEG00000012983) #27	AAGAB (ENSNLEG00000013006) #28	IQCH (ENSNLEG00000013025) #29	C15orf61 (ENSNLEG00000013065) #30	MAP2K5 (ENSNLEG00000013066) #32	ENSNLEG00000032785	SKOR1 (ENSNLEG00000013091) #33	ENSNLEG00000031759	PIAS1 (ENSNLEG00000013103) #34
Cercopithecidae	ANCESTRAL SPECIES	21	ENSGT00390000017392	ENSGT00390000017625.c	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764.g.a #21	ENSGT00940000153487.b.b.i.a #22	ENSGT00390000010331	ENSGT00390000018145.cb.a.a.a #23	ENSGT00390000013696 #24	ENSGT00910000147890	ENSGT00940000157369 #25	ENSGT00910000147041	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00910000146962	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34
Rhinopithecus	ANCESTRAL SPECIES	49	ENSGT00390000017392	ENSGT00390000017625.c	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764.g.a #21	ENSGT00940000153487.b.b.i.a #22	ENSGT00390000010331	ENSGT00390000018145.cb.a.a.a #23	ENSGT00390000013696 #24	ENSGT00910000147890	ENSGT00940000157369 #25	ENSGT00910000147041	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00910000146962	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34
Golden snub-nosed monkey	MODERN SPECIES	1106												RAB11A (ENSRROG00000035305) #18	MEGF11 (ENSRROG00000025747) #19	DIS3L (ENSRROG00000038323) #20	TIPIN (ENSRROG00000004107) #21	MAP2K1 (ENSRROG00000034405) #22	SNAPC5 (ENSRROG00000042536)	ENSRROG00000036201 #23	ZWILCH (ENSRROG00000042656) #24	LCTL (ENSRROG00000040652) #25	ENSRROG00000034499	ENSRROG00000009183	ENSRROG00000043245 #26	ENSRROG00000012076	ENSRROG00000003570	SMAD3 (ENSRROG00000024517) #27	AAGAB (ENSRROG00000042217) #28	IQCH (ENSRROG00000023549) #29	C15orf61 (ENSRROG00000026466) #30	MAP2K5 (ENSRROG00000043911) #32	ENSRROG00000000680
Black snub-nosed monkey	MODERN SPECIES	1519		ENSRBIG00000028588	CILP (ENSRBIG00000004854) #7	PARP16 (ENSRBIG00000040761) #8	IGDCC3 (ENSRBIG00000032739) #10	IGDCC4 (ENSRBIG00000024016) #11	DPP8 (ENSRBIG00000037591) #12	HACD3 (ENSRBIG00000040553) #13	INTS14 (ENSRBIG00000037004) #14	SLC24A1 (ENSRBIG00000029938) #15	DENND4A (ENSRBIG00000043812) #16	RAB11A (ENSRBIG00000035649) #18	MEGF11 (ENSRBIG00000032238) #19	DIS3L (ENSRBIG00000029360) #20	TIPIN (ENSRBIG00000035207) #21	MAP2K1 (ENSRBIG00000031516) #22	SNAPC5 (ENSRBIG00000033556)	ENSRBIG00000043139 #23	ZWILCH (ENSRBIG00000043121) #24	ENSRBIG00000038789	LCTL (ENSRBIG00000034724) #25	ENSRBIG00000044058	SMAD6 (ENSRBIG00000039005) #26	SMAD3 (ENSRBIG00000026650) #27	AAGAB (ENSRBIG00000027896) #28	IQCH (ENSRBIG00000037509) #29	C15orf61 (ENSRBIG00000041044) #30	MAP2K5 (ENSRBIG00000042741) #32	SKOR1 (ENSRBIG00000027225) #33	PIAS1 (ENSRBIG00000035465) #34	CALML4 (ENSRBIG00000022837) #35
Cercopithecinae	ANCESTRAL SPECIES	2	ENSGT00390000017392	ENSGT00390000017625.c	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764.g.a #21	ENSGT00940000153487.b.b.i.a #22	ENSGT00390000010331	ENSGT00390000018145.cb.a.a.a #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00910000147041	ENSGT00940000158146 #26	ENSGT01030000234570.d.b.a.a.a.b.a.b.a.c.b	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35
Cercopithecinae_a	ANCESTRAL SPECIES	1	ENSGT00390000017392	ENSGT00390000017625.c	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764.g.a #21	ENSGT00940000153487.b.b.i.a #22	ENSGT00390000010331	ENSGT00390000018145.cb.a.a.a #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00910000147041	ENSGT00940000158146 #26	ENSGT01030000234570.d.b.a.a.a.b.a.b.a.c.b	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35
Macaca	ANCESTRAL SPECIES	1	ENSGT00390000017392	ENSGT00390000017625.c	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764.g.a #21	ENSGT00940000153487.b.b.i.a #22	ENSGT00390000010331	ENSGT00390000018145.cb.a.a.a #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00910000147041	ENSGT00940000158146 #26	ENSGT01030000234570.d.b.a.a.a.b.a.b.a.c.b	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35
Macaca_a	ANCESTRAL SPECIES	2	ENSGT00390000017392	ENSGT00390000017625.c	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764.g.a #21	ENSGT00940000153487.b.b.i.a #22	ENSGT00390000010331	ENSGT00390000018145.cb.a.a.a #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00910000147041	ENSGT00940000158146 #26	ENSGT01030000234570.d.b.a.a.a.b.a.b.a.c.b	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35
Rhesus	MODERN SPECIES	17	PDCD7 (ENSMMUG00000006297)	CLPX (ENSMMUG00000006714)	CILP (ENSMMUG00000009659) #7	PARP16 (ENSMMUG00000005749) #8	IGDCC3 (ENSMMUG00000021783) #10	IGDCC4 (ENSMMUG00000021788) #11	DPP8 (ENSMMUG00000015447) #12	HACD3 (ENSMMUG00000015450) #13	INTS14 (ENSMMUG00000008095) #14	SLC24A1 (ENSMMUG00000022059) #15	DENND4A (ENSMMUG00000022056) #16	RAB11A (ENSMMUG00000008006) #18	MEGF11 (ENSMMUG00000008007) #19	DIS3L (ENSMMUG00000003693) #20	TIPIN (ENSMMUG00000003695) #21	MAP2K1 (ENSMMUG00000016840) #22	SNAPC5 (ENSMMUG00000060148)	RPL4 (ENSMMUG00000016844) #23	ZWILCH (ENSMMUG00000029588) #24	LCTL (ENSMMUG00000017447) #25	ENSMMUG00000063378	SMAD6 (ENSMMUG00000019018) #26	ENSMMUG00000057696	SMAD3 (ENSMMUG00000015455) #27	ENSMMUG00000051534	AAGAB (ENSMMUG00000041415) #28	IQCH (ENSMMUG00000015458) #29	C7H15orf61 (ENSMMUG00000060549) #30	MAP2K5 (ENSMMUG00000014482) #32	SKOR1 (ENSMMUG00000014485) #33	PIAS1 (ENSMMUG00000011699) #34
Pig-tailed macaque	MODERN SPECIES	77	PDCD7 (ENSMNEG00000033283)	ENSMNEG00000030071	CILP (ENSMNEG00000031330) #7	PARP16 (ENSMNEG00000028481) #8	IGDCC3 (ENSMNEG00000043800) #10	IGDCC4 (ENSMNEG00000039603) #11	DPP8 (ENSMNEG00000033598) #12	HACD3 (ENSMNEG00000037877) #13	INTS14 (ENSMNEG00000039516) #14	SLC24A1 (ENSMNEG00000041188) #15	DENND4A (ENSMNEG00000031159) #16	RAB11A (ENSMNEG00000043040) #18	MEGF11 (ENSMNEG00000028540) #19	DIS3L (ENSMNEG00000035066) #20	TIPIN (ENSMNEG00000031947) #21	MAP2K1 (ENSMNEG00000027299) #22	SNAPC5 (ENSMNEG00000032504)	ENSMNEG00000027886 #23	ZWILCH (ENSMNEG00000034955) #24	LCTL (ENSMNEG00000002923) #25	ENSMNEG00000031888	SMAD6 (ENSMNEG00000034598) #26	ENSMNEG00000032567	ENSMNEG00000030486	SMAD3 (ENSMNEG00000033094) #27	AAGAB (ENSMNEG00000040056) #28	IQCH (ENSMNEG00000034386) #29	C15orf61 (ENSMNEG00000034192) #30	MAP2K5 (ENSMNEG00000043681) #32	SKOR1 (ENSMNEG00000032875) #33	PIAS1 (ENSMNEG00000030278) #34
Cercopithecinae_b	ANCESTRAL SPECIES	31	ENSGT00390000017392	ENSGT00390000017625.c	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764.g.a #21	ENSGT00940000153487.b.b.i.a #22	ENSGT00390000010331	ENSGT00390000018145.cb.a.a.a #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00910000147041	ENSGT00940000158146 #26	ENSGT01030000234570.d.b.a.a.a.b.a.b.a.c.b	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35
Olive baboon	MODERN SPECIES	17	CILP (ENSPANG00000016724) #7	PARP16 (ENSPANG00000016725) #8	IGDCC3 (ENSPANG00000016709) #10	IGDCC4 (ENSPANG00000016710) #11	DPP8 (ENSPANG00000016711) #12	HACD3 (ENSPANG00000016698) #13	INTS14 (ENSPANG00000016699) #14	SLC24A1 (ENSPANG00000016700) #15	DENND4A (ENSPANG00000016685) #16	RAB11A (ENSPANG00000016687) #18	MEGF11 (ENSPANG00000016670) #19	ENSPANG00000024144	ENSPANG00000046531	DIS3L (ENSPANG00000016671) #20	TIPIN (ENSPANG00000016672) #21	MAP2K1 (ENSPANG00000016664) #22	SNAPC5 (ENSPANG00000016665)	ENSPANG00000016666 #23	ZWILCH (ENSPANG00000016646) #24	LCTL (ENSPANG00000016647) #25	SMAD6 (ENSPANG00000016648) #26	ENSPANG00000016626	SMAD3 (ENSPANG00000016627) #27	AAGAB (ENSPANG00000016628) #28	IQCH (ENSPANG00000016625) #29	C15orf61 (ENSPANG00000016591) #30	MAP2K5 (ENSPANG00000016592) #32	SKOR1 (ENSPANG00000016593) #33	ENSPANG00000043681	PIAS1 (ENSPANG00000016583) #34	CALML4 (ENSPANG00000016584) #35
Cercopithecinae_d	ANCESTRAL SPECIES	37	ENSGT00390000017625.c	ENSGT00390000008152.B.b #7	ENSGT00910000147481	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764.g.a #21	ENSGT00940000153487.b.b.i.a #22	ENSGT00390000010331	ENSGT00390000018145.cb.a.a.a #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00910000147041	ENSGT00940000158146 #26	ENSGT01030000234570.d.b.a.a.a.b.a.b.a.c.b	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35
Sooty mangabey	MODERN SPECIES	336	ENSCATG00000041300	CILP (ENSCATG00000007240) #7	ENSCATG00000031421	PARP16 (ENSCATG00000029968) #8	IGDCC3 (ENSCATG00000041269) #10	IGDCC4 (ENSCATG00000041870) #11	DPP8 (ENSCATG00000037927) #12	HACD3 (ENSCATG00000030252) #13	INTS14 (ENSCATG00000039488) #14	SLC24A1 (ENSCATG00000034684) #15	DENND4A (ENSCATG00000030001) #16	RAB11A (ENSCATG00000034739) #18	MEGF11 (ENSCATG00000032543) #19	DIS3L (ENSCATG00000044661) #20	TIPIN (ENSCATG00000040328) #21	MAP2K1 (ENSCATG00000038127) #22	SNAPC5 (ENSCATG00000029571)	ENSCATG00000031544 #23	ZWILCH (ENSCATG00000036836) #24	LCTL (ENSCATG00000033622) #25	ENSCATG00000019079	SMAD6 (ENSCATG00000002013) #26	ENSCATG00000035445	ENSCATG00000000879	SMAD3 (ENSCATG00000009733) #27	AAGAB (ENSCATG00000043588) #28	IQCH (ENSCATG00000042766) #29	C15orf61 (ENSCATG00000012736) #30	MAP2K5 (ENSCATG00000040709) #32	SKOR1 (ENSCATG00000011653) #33	PIAS1 (ENSCATG00000010291) #34
Drill	MODERN SPECIES	253	CILP (ENSMLEG00000042537) #7	ENSMLEG00000027861	PARP16 (ENSMLEG00000035171) #8	IGDCC3 (ENSMLEG00000038371) #10	IGDCC4 (ENSMLEG00000028139) #11	DPP8 (ENSMLEG00000039474) #12	HACD3 (ENSMLEG00000005763) #13	INTS14 (ENSMLEG00000027622) #14	SLC24A1 (ENSMLEG00000039031) #15	DENND4A (ENSMLEG00000041101) #16	RAB11A (ENSMLEG00000032505) #18	MEGF11 (ENSMLEG00000042443) #19	ENSMLEG00000039621	DIS3L (ENSMLEG00000034558) #20	TIPIN (ENSMLEG00000031419) #21	MAP2K1 (ENSMLEG00000034124) #22	SNAPC5 (ENSMLEG00000044262)	ENSMLEG00000043250 #23	ZWILCH (ENSMLEG00000031789) #24	LCTL (ENSMLEG00000011538) #25	ENSMLEG00000036582	ENSMLEG00000039010	ENSMLEG00000033311	ENSMLEG00000039372	SMAD3 (ENSMLEG00000032633) #27	AAGAB (ENSMLEG00000042581) #28	IQCH (ENSMLEG00000008461) #29	C15orf61 (ENSMLEG00000044432) #30	MAP2K5 (ENSMLEG00000032952) #32	SKOR1 (ENSMLEG00000033424) #33	PIAS1 (ENSMLEG00000042488) #34
Vervet Monkey	MODERN SPECIES	18	PDCD7 (ENSCSAG00000012751)	CLPX (ENSCSAG00000012812)	CILP (ENSCSAG00000012835) #7	PARP16 (ENSCSAG00000012842) #8	IGDCC3 (ENSCSAG00000012887) #10	IGDCC4 (ENSCSAG00000012938) #11	DPP8 (ENSCSAG00000012960) #12	HACD3 (ENSCSAG00000012971) #13	INTS14 (ENSCSAG00000012981) #14	SLC24A1 (ENSCSAG00000013003) #15	DENND4A (ENSCSAG00000013032) #16	RAB11A (ENSCSAG00000013038) #18	MEGF11 (ENSCSAG00000013112) #19	DIS3L (ENSCSAG00000013140) #20	TIPIN (ENSCSAG00000013176) #21	MAP2K1 (ENSCSAG00000013191) #22	SNAPC5 (ENSCSAG00000013199)	ENSCSAG00000013205 #23	ZWILCH (ENSCSAG00000013218) #24	LCTL (ENSCSAG00000013237) #25	SMAD6 (ENSCSAG00000013248) #26	ENSCSAG00000013271	ENSCSAG00000019736	SMAD3 (ENSCSAG00000013275) #27	AAGAB (ENSCSAG00000013281) #28	IQCH (ENSCSAG00000013352) #29	C15orf61 (ENSCSAG00000013380) #30	MAP2K5 (ENSCSAG00000013397) #32	SKOR1 (ENSCSAG00000013424) #33	PIAS1 (ENSCSAG00000013455) #34	CALML4 (ENSCSAG00000013468) #35
Catarrhini	ANCESTRAL SPECIES	15	ENSGT00720000108839	ENSGT00950000183074.B.a.a	ENSGT00390000007091	ENSGT00390000013141	ENSGT00950000183210.d.a.c.b.b.a.b.b	ENSGT00950000183149.C	ENSGT00940000157136	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00910000147307	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00940000155500	ENSGT00940000159066	ENSGT00940000153487.b.b.i.b #22	ENSGT00390000013419	ENSGT00390000006503.b	ENSGT01030000234564.a.a.b.b	ENSGT00390000017890	ENSGT00940000165777	ENSGT00940000159617	ENSGT00410000029064	ENSGT00390000011749	ENSGT00940000156986	ENSGT00390000013228.e.a.f	ENSGT00390000018326	ENSGT00550000074618.a.b	ENSGT00390000006260	ENSGT00950000183162.b	ENSGT00940000159168
Hominoidea	ANCESTRAL SPECIES	14	ENSGT00720000108839	ENSGT00950000183074.B.a.a	ENSGT00390000007091	ENSGT00390000013141	ENSGT00950000183210.d.a.c.b.b.a.b.b	ENSGT00950000183149.C	ENSGT00940000157136	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00910000147307	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00940000155500	ENSGT00940000159066	ENSGT00940000153487.b.b.i.b #22	ENSGT00390000013419	ENSGT00390000006503.b	ENSGT01030000234564.a.a.b.b	ENSGT00390000017890	ENSGT00940000159617	ENSGT00390000011749	ENSGT00410000029064	ENSGT00940000156986	ENSGT00390000013228.e.a.f	ENSGT00390000018326	ENSGT00550000074618.a.b	ENSGT00390000006260	ENSGT00950000183162.b	ENSGT00940000159168	ENSGT01060000253534
Hominidae	ANCESTRAL SPECIES	15	ENSGT00720000108839	ENSGT00950000183074.B.a.a	ENSGT00390000007091	ENSGT00390000013141	ENSGT00950000183210.d.a.c.b.b.a.b.b	ENSGT00950000183149.C	ENSGT00940000157136	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00910000147307	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00940000155500	ENSGT00940000159066	ENSGT00940000153487.b.b.i.b #22	ENSGT00390000013419	ENSGT00390000006503.b	ENSGT01030000234564.a.a.b.b	ENSGT00390000017890	ENSGT00940000159617	ENSGT00390000011749	ENSGT00410000029064	ENSGT00940000156986	ENSGT00390000018326	ENSGT00550000074618.a.b	ENSGT00390000006260	ENSGT00950000183162.b	ENSGT00940000159168	ENSGT01060000253534	ENSGT00940000157326
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	13	ENSGT00950000183074.B.a.a	ENSGT00390000007091	ENSGT00390000013141	ENSGT00950000183210.d.a.c.b.b.a.b.b	ENSGT00950000183149.C	ENSGT00940000157136	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00910000147307	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00910000147585	ENSGT00940000155500	ENSGT00940000159066	ENSGT00940000153487.b.b.i.b #22	ENSGT00390000013419	ENSGT00390000006503.b	ENSGT00950000183198.c.a.a.a.a.l.a.a	ENSGT01030000234564.a.a.b.b	ENSGT00390000017890	ENSGT00940000159617	ENSGT00390000011749	ENSGT00410000029064	ENSGT00940000156986	ENSGT00390000018326	ENSGT00550000074618.a.b	ENSGT00390000006260	ENSGT00950000183162.b	ENSGT00940000159168	ENSGT01060000253534
Homo/Pan group	ANCESTRAL SPECIES	12	ENSGT00950000183074.B.a.a	ENSGT00390000007091	ENSGT00390000013141	ENSGT00950000183210.d.a.c.b.b.a.b.b	ENSGT00950000183149.C	ENSGT00940000157136	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00910000147307	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00910000147585	ENSGT00940000155500	ENSGT00940000159066	ENSGT00940000153487.b.b.i.b #22	ENSGT00390000013419	ENSGT00390000006503.b	ENSGT00950000183198.c.a.a.a.a.l.a.a	ENSGT01030000234564.a.a.b.b	ENSGT00390000017890	ENSGT00940000159617	ENSGT00390000011749	ENSGT00410000029064	ENSGT00940000156986	ENSGT00390000018326	ENSGT00550000074618.a.b	ENSGT00390000006260	ENSGT00950000183162.b	ENSGT00940000159168	ENSGT01060000253534
Pan	ANCESTRAL SPECIES	30	ENSGT00950000183074.B.a.a	ENSGT00390000007091	ENSGT00390000013141	ENSGT00950000183210.d.a.c.b.b.a.b.b	ENSGT00950000183149.C	ENSGT00940000157136	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00910000147307	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00910000147585	ENSGT00940000155500	ENSGT00940000159066	ENSGT00940000153487.b.b.i.b #22	ENSGT00390000013419	ENSGT00390000006503.b	ENSGT00950000183198.c.a.a.a.a.l.a.a	ENSGT01030000234564.a.a.b.b	ENSGT00390000017890	ENSGT00940000159617	ENSGT00390000011749	ENSGT00410000029064	ENSGT00940000156986	ENSGT00390000018326	ENSGT00550000074618.a.b	ENSGT00390000006260	ENSGT00950000183162.b	ENSGT00940000159168	ENSGT00910000146897.a.a
Bonobo	MODERN SPECIES	21	SCARA5 (ENSPPAG00000032372)	NUGGC (ENSPPAG00000033912)	ELP3 (ENSPPAG00000003473)	ENSPPAG00000042684	PNOC (ENSPPAG00000031795)	ZNF395 (ENSPPAG00000029300)	FBXO16 (ENSPPAG00000030694)	FZD3 (ENSPPAG00000032462)	EXTL3 (ENSPPAG00000033582)	ENSPPAG00000027198	INTS9 (ENSPPAG00000041473)	HMBOX1 (ENSPPAG00000026235)	ENSPPAG00000036843	KIF13B (ENSPPAG00000042259)	DUSP4 (ENSPPAG00000036541)	ENSPPAG00000043687 #22	SARAF (ENSPPAG00000032572)	ENSPPAG00000036229	ENSPPAG00000010617	MBOAT4 (ENSPPAG00000032737)	DCTN6 (ENSPPAG00000035745)	ENSPPAG00000028266	ENSPPAG00000041133	ENSPPAG00000033108	GTF2E2 (ENSPPAG00000030725)	SMIM18 (ENSPPAG00000033127)	GSR (ENSPPAG00000035261)	UBXN8 (ENSPPAG00000034114)	PPP2CB (ENSPPAG00000035602)	TEX15 (ENSPPAG00000039500)	PURG (ENSPPAG00000033829)
Chimpanzee	MODERN SPECIES	21	PBK (ENSPTRG00000020112)	SCARA5 (ENSPTRG00000020113)	NUGGC (ENSPTRG00000020114)	ELP3 (ENSPTRG00000020115)	ENSPTRG00000043531	PNOC (ENSPTRG00000020116)	ZNF395 (ENSPTRG00000020119)	FBXO16 (ENSPTRG00000034416)	FZD3 (ENSPTRG00000020122)	EXTL3 (ENSPTRG00000020124)	INTS9 (ENSPTRG00000020125)	HMBOX1 (ENSPTRG00000020127)	KIF13B (ENSPTRG00000023437)	ENSPTRG00000051054	DUSP4 (ENSPTRG00000020129)	ENSPTRG00000043672 #22	SARAF (ENSPTRG00000020131)	LEPROTL1 (ENSPTRG00000039951)	MBOAT4 (ENSPTRG00000020133)	DCTN6 (ENSPTRG00000020134)	ENSPTRG00000043386	ENSPTRG00000044623	RBPMS (ENSPTRG00000020135)	GTF2E2 (ENSPTRG00000022529)	ENSPTRG00000052031	GSR (ENSPTRG00000020138)	UBXN8 (ENSPTRG00000049759)	PPP2CB (ENSPTRG00000045665)	TEX15 (ENSPTRG00000020142)	PURG (ENSPTRG00000020143)	WRN (ENSPTRG00000020145)
Gorilla	MODERN SPECIES	21	ESCO2 (ENSGGOG00000009689)	PBK (ENSGGOG00000006648)	SCARA5 (ENSGGOG00000001855)	NUGGC (ENSGGOG00000011097)	ELP3 (ENSGGOG00000004808)	PNOC (ENSGGOG00000015723)	ZNF395 (ENSGGOG00000015725)	FBXO16 (ENSGGOG00000016343)	FZD3 (ENSGGOG00000024822)	EXTL3 (ENSGGOG00000008655)	INTS9 (ENSGGOG00000017009)	HMBOX1 (ENSGGOG00000000860)	KIF13B (ENSGGOG00000000863)	ENSGGOG00000037881	DUSP4 (ENSGGOG00000005916)	ENSGGOG00000022968 #22	ENSGGOG00000038643	ENSGGOG00000036670	ENSGGOG00000039626	ENSGGOG00000040308	ENSGGOG00000043426	CA2 (ENSGGOG00000027324)	CA3 (ENSGGOG00000010673)	CA1 (ENSGGOG00000008746)	CA13 (ENSGGOG00000006188)	RBIS (ENSGGOG00000027464)	E2F5 (ENSGGOG00000009737)	LRRCC1 (ENSGGOG00000022805)	RALYL (ENSGGOG00000000841)	SNX16 (ENSGGOG00000003611)	ENSGGOG00000010478
Cercopithecidae	ANCESTRAL SPECIES	14	ENSGT00940000158598	ENSGT00720000108839	ENSGT00950000183074.B.a.a	ENSGT00390000007091	ENSGT00390000013141	ENSGT00950000183210.d.a.c.b.b.a.b.b	ENSGT00950000183149.C	ENSGT00940000157136	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00940000155500	ENSGT00940000159066	ENSGT00940000153487.b.b.i.b #22	ENSGT00390000013419	ENSGT00390000006503.b	ENSGT01030000234564.a.a.b.b	ENSGT00390000017890	ENSGT00940000165777	ENSGT00940000159617	ENSGT00410000029064	ENSGT00390000011749	ENSGT00940000156986	ENSGT00390000013228.e.a.f	ENSGT00390000018326	ENSGT00550000074618.a.b	ENSGT00390000006260	ENSGT00950000183162.b	ENSGT00940000159168
Rhinopithecus	ANCESTRAL SPECIES	55	ENSGT00390000004380.m.a.b	ENSGT00940000158598	ENSGT00720000108839.a	ENSGT00950000183074.B.a.a	ENSGT00390000007091	ENSGT00390000013141	ENSGT00950000183149.C	ENSGT00940000157136	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00940000155500	ENSGT00940000159066	ENSGT00940000153487.b.b.i.b #22	ENSGT00390000013419	ENSGT00390000006503.b	ENSGT01030000234564.a.a.b.b	ENSGT00390000017890	ENSGT00940000165777	ENSGT00940000159617	ENSGT00410000029064	ENSGT00390000011749	ENSGT00940000156986	ENSGT00390000018326	ENSGT00550000074618.a.b	ENSGT00390000006260	ENSGT00950000183162.b	ENSGT00940000159168	ENSGT00940000154314.l
Golden snub-nosed monkey	MODERN SPECIES	1551			SCARA5 (ENSRROG00000038278)	NUGGC (ENSRROG00000035584)	ELP3 (ENSRROG00000035502)	PNOC (ENSRROG00000034843)	ZNF395 (ENSRROG00000039052)	FBXO16 (ENSRROG00000031695)	FZD3 (ENSRROG00000042665)	EXTL3 (ENSRROG00000037901)	INTS9 (ENSRROG00000040531)	HMBOX1 (ENSRROG00000031895)	KIF13B (ENSRROG00000043696)	DUSP4 (ENSRROG00000022122)	ENSRROG00000023257	ENSRROG00000037428 #22	SARAF (ENSRROG00000027882)	LEPROTL1 (ENSRROG00000029326)	MBOAT4 (ENSRROG00000034165)	DCTN6 (ENSRROG00000038808)	ENSRROG00000041818	RBPMS (ENSRROG00000042518)	SMIM18 (ENSRROG00000017435)	GTF2E2 (ENSRROG00000042583)	ENSRROG00000030996	GSR (ENSRROG00000038338)	UBXN8 (ENSRROG00000037021)	PPP2CB (ENSRROG00000031584)	TEX15 (ENSRROG00000031020)	PURG (ENSRROG00000040270)	WRN (ENSRROG00000045381)
Black snub-nosed monkey	MODERN SPECIES	159															DUSP4 (ENSRBIG00000040063)	ENSRBIG00000035464 #22	SARAF (ENSRBIG00000034416)	LEPROTL1 (ENSRBIG00000043780)	MBOAT4 (ENSRBIG00000042055)	DCTN6 (ENSRBIG00000019701)	ENSRBIG00000032267	RBPMS (ENSRBIG00000038218)	GTF2E2 (ENSRBIG00000043183)	GSR (ENSRBIG00000043055)	ENSRBIG00000026447	ENSRBIG00000042273	UBXN8 (ENSRBIG00000031406)	PPP2CB (ENSRBIG00000032443)	TEX15 (ENSRBIG00000004255)	PURG (ENSRBIG00000028388)	WRN (ENSRBIG00000031825)
Cercopithecinae	ANCESTRAL SPECIES	16	ENSGT00940000158598	ENSGT00720000108839	ENSGT00950000183074.B.a.a	ENSGT00390000007091	ENSGT00390000013141	ENSGT00950000183210.d.a.c.b.b.a.b.b	ENSGT00950000183149.C	ENSGT00940000157136	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00940000155500	ENSGT00940000159066	ENSGT00940000153487.b.b.i.b #22	ENSGT00390000013419	ENSGT00390000006503.b	ENSGT01030000234564.a.a.b.b	ENSGT00390000017890	ENSGT00940000165777	ENSGT00940000159617	ENSGT00410000029064	ENSGT00390000011749	ENSGT00940000156986	ENSGT00390000013228.e.a.f	ENSGT00390000018326	ENSGT00550000074618.a.b	ENSGT00390000006260	ENSGT00950000183162.b	ENSGT00940000159168
Cercopithecinae_a	ANCESTRAL SPECIES	15	ENSGT00940000158598	ENSGT00720000108839	ENSGT00950000183074.B.a.a	ENSGT00390000007091	ENSGT00390000013141	ENSGT00950000183210.d.a.c.b.b.a.b.b.c	ENSGT00950000183149.C	ENSGT00940000157136	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00940000155500	ENSGT00940000159066	ENSGT00940000153487.b.b.i.b #22	ENSGT00390000013419	ENSGT00390000006503.b	ENSGT01030000234564.a.a.b.b	ENSGT00390000017890	ENSGT00940000165777	ENSGT00940000159617	ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000002517.a.b.b.c.a	ENSGT00940000156986	ENSGT00390000013228.e.a.f	ENSGT00390000018326	ENSGT00550000074618.a.b	ENSGT00390000006260	ENSGT00950000183162.b
Macaca	ANCESTRAL SPECIES	14	ENSGT00940000158598	ENSGT00720000108839	ENSGT00950000183074.B.a.a	ENSGT00390000007091	ENSGT00390000013141	ENSGT00950000183210.d.a.c.b.b.a.b.b.c	ENSGT00950000183149.C	ENSGT00940000157136	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00940000155500	ENSGT00940000159066	ENSGT00940000153487.b.b.i.b #22	ENSGT00390000013419	ENSGT00390000006503.b	ENSGT01030000234564.a.a.b.b	ENSGT00390000017890	ENSGT00940000165777	ENSGT00940000159617	ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000002517.a.b.b.c.a	ENSGT00940000156986	ENSGT00390000018326	ENSGT00550000074618.a.b	ENSGT00390000006260	ENSGT00950000183162.b	ENSGT00940000159168
Pig-tailed macaque	MODERN SPECIES	579	ENSMNEG00000007575	PBK (ENSMNEG00000043731)	SCARA5 (ENSMNEG00000043810)	NUGGC (ENSMNEG00000045452)	ELP3 (ENSMNEG00000024316)	ENSMNEG00000021099	PNOC (ENSMNEG00000032474)	ZNF395 (ENSMNEG00000011767)	FBXO16 (ENSMNEG00000045209)	FZD3 (ENSMNEG00000040320)	EXTL3 (ENSMNEG00000038935)	INTS9 (ENSMNEG00000035204)	HMBOX1 (ENSMNEG00000036228)	KIF13B (ENSMNEG00000002442)	DUSP4 (ENSMNEG00000039817)	ENSMNEG00000037297 #22	SARAF (ENSMNEG00000010730)	LEPROTL1 (ENSMNEG00000045245)	MBOAT4 (ENSMNEG00000029602)	DCTN6 (ENSMNEG00000042347)	ENSMNEG00000043824	RBPMS (ENSMNEG00000043805)	SMIM18 (ENSMNEG00000026668)	GTF2E2 (ENSMNEG00000038427)	ENSMNEG00000043578	GSR (ENSMNEG00000034327)	UBXN8 (ENSMNEG00000038058)	PPP2CB (ENSMNEG00000042889)	TEX15 (ENSMNEG00000045074)	PURG (ENSMNEG00000037043)	WRN (ENSMNEG00000032617)
Cercopithecinae_b	ANCESTRAL SPECIES	9	ENSGT00940000158598	ENSGT00720000108839	ENSGT00950000183074.B.a.a	ENSGT00390000007091	ENSGT00390000013141	ENSGT00950000183210.d.a.c.b.b.a.b.b.c	ENSGT00950000183149.C	ENSGT00940000157136	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00940000155500	ENSGT00940000159066	ENSGT00940000153487.b.b.i.b #22	ENSGT00390000013419	ENSGT00390000006503.b	ENSGT01030000234564.a.a.b.b	ENSGT00390000017890	ENSGT00940000165777	ENSGT00940000159617	ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000002517.a.b.b.c.a	ENSGT00940000156986	ENSGT00390000013228.e.a.f	ENSGT00390000018326	ENSGT00550000074618.a.b	ENSGT00390000006260	ENSGT00950000183162.b
Cercopithecinae_d	ANCESTRAL SPECIES	50	ENSGT00940000158598	ENSGT00720000108839	ENSGT00950000183074.B.a.a	ENSGT00390000007091	ENSGT00390000013141	ENSGT00950000183210.d.a.c.b.b.a.b.b.c	ENSGT00950000183149.C	ENSGT00940000157136	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00940000155500	ENSGT00940000159066	ENSGT00940000153487.b.b.i.b #22	ENSGT00390000013419	ENSGT00390000006503.b	ENSGT01030000234564.a.a.b.b	ENSGT00390000017890	ENSGT00940000165777	ENSGT00940000159617	ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000002517.a.b.b.c.a	ENSGT00940000156986	ENSGT00390000013228.e.a.f	ENSGT00390000018326	ENSGT00550000074618.a.b	ENSGT00390000006260	ENSGT00950000183162.b
Sooty mangabey	MODERN SPECIES	555	ESCO2 (ENSCATG00000032436)	PBK (ENSCATG00000023001)	SCARA5 (ENSCATG00000032773)	NUGGC (ENSCATG00000011556)	ELP3 (ENSCATG00000034665)	ENSCATG00000035437	PNOC (ENSCATG00000034393)	ZNF395 (ENSCATG00000032647)	FBXO16 (ENSCATG00000040856)	FZD3 (ENSCATG00000044589)	EXTL3 (ENSCATG00000029453)	INTS9 (ENSCATG00000042463)	HMBOX1 (ENSCATG00000037589)	KIF13B (ENSCATG00000008274)	DUSP4 (ENSCATG00000031537)	ENSCATG00000041532 #22	SARAF (ENSCATG00000044043)	LEPROTL1 (ENSCATG00000037168)	MBOAT4 (ENSCATG00000029389)	DCTN6 (ENSCATG00000038873)	ENSCATG00000038571	RBPMS (ENSCATG00000036486)	SMIM18 (ENSCATG00000020547)	GTF2E2 (ENSCATG00000040282)	ENSCATG00000034142	ENSCATG00000030271	GSR (ENSCATG00000029887)	UBXN8 (ENSCATG00000043806)	PPP2CB (ENSCATG00000010170)	TEX15 (ENSCATG00000012961)	PURG (ENSCATG00000041294)
Drill	MODERN SPECIES	676													ENSMLEG00000033649	KIF13B (ENSMLEG00000012924)	DUSP4 (ENSMLEG00000044011)	ENSMLEG00000036541 #22	SARAF (ENSMLEG00000034776)	LEPROTL1 (ENSMLEG00000039909)	MBOAT4 (ENSMLEG00000028769)	DCTN6 (ENSMLEG00000042120)	ENSMLEG00000037285	RBPMS (ENSMLEG00000015635)	SMIM18 (ENSMLEG00000027072)	GTF2E2 (ENSMLEG00000032808)	ENSMLEG00000038586	ENSMLEG00000028120	GSR (ENSMLEG00000007410)	UBXN8 (ENSMLEG00000037958)	PPP2CB (ENSMLEG00000034990)	TEX15 (ENSMLEG00000036738)	PURG (ENSMLEG00000015367)
Catarrhini	ANCESTRAL SPECIES																	ENSGT00940000153487.b.b.j #22
Cercopithecidae	ANCESTRAL SPECIES																	ENSGT00940000153487.b.b.j #22
Cercopithecinae	ANCESTRAL SPECIES																	ENSGT00940000153487.b.b.j #22
Cercopithecinae_a	ANCESTRAL SPECIES																	ENSGT00940000153487.b.b.j #22
Macaca	ANCESTRAL SPECIES																	ENSGT00940000153487.b.b.j #22
Macaca_a	ANCESTRAL SPECIES																	ENSGT00940000153487.b.b.j #22
Crab-eating macaque	MODERN SPECIES	17	ENSMFAG00000061482	IGDCC3 (ENSMFAG00000041666) #10	IGDCC4 (ENSMFAG00000031165) #11	DPP8 (ENSMFAG00000043661) #12	HACD3 (ENSMFAG00000032102) #13	INTS14 (ENSMFAG00000031689) #14	SLC24A1 (ENSMFAG00000000105) #15	DENND4A (ENSMFAG00000030601) #16	ENSMFAG00000047947	ENSMFAG00000060677	ENSMFAG00000055472	RAB11A (ENSMFAG00000000699) #18	MEGF11 (ENSMFAG00000038247) #19	DIS3L (ENSMFAG00000035628) #20	TIPIN (ENSMFAG00000031924) #21	MAP2K1 (ENSMFAG00000036522) #22	ENSMFAG00000063036	SNAPC5 (ENSMFAG00000046383)	RPL4 (ENSMFAG00000036412) #23	ZWILCH (ENSMFAG00000036529) #24	LCTL (ENSMFAG00000000458) #25	ENSMFAG00000037066	ENSMFAG00000062655	SMAD3 (ENSMFAG00000001781) #27	AAGAB (ENSMFAG00000040550) #28	IQCH (ENSMFAG00000001124) #29	C15orf61 (ENSMFAG00000053739) #30	MAP2K5 (ENSMFAG00000030100) #32	SKOR1 (ENSMFAG00000001347) #33	PIAS1 (ENSMFAG00000038832) #34	CLN6 (ENSMFAG00000042975) #36
Hominoidea	ANCESTRAL SPECIES																	ENSGT00940000153487.b.b.j #22
Hominidae	ANCESTRAL SPECIES																	ENSGT00940000153487.b.b.j #22
Orangutan	MODERN SPECIES	21	CCDC25 (ENSPPYG00000018468)	ESCO2 (ENSPPYG00000018469)	PBK (ENSPPYG00000018470)	SCARA5 (ENSPPYG00000018471)	NUGGC (ENSPPYG00000018472)	ELP3 (ENSPPYG00000018473)	PNOC (ENSPPYG00000018475)	ZNF395 (ENSPPYG00000018476)	FBXO16 (ENSPPYG00000029855)	FZD3 (ENSPPYG00000018477)	EXTL3 (ENSPPYG00000018478)	INTS9 (ENSPPYG00000018479)	HMBOX1 (ENSPPYG00000018480)	KIF13B (ENSPPYG00000018481)	DUSP4 (ENSPPYG00000018482)	ENSPPYG00000038802 #22	SARAF (ENSPPYG00000018483)	LEPROTL1 (ENSPPYG00000018484)	ENSPPYG00000032388	MBOAT4 (ENSPPYG00000018485)	DCTN6 (ENSPPYG00000018486)	ENSPPYG00000036415	ENSPPYG00000035281	ENSPPYG00000018487	GTF2E2 (ENSPPYG00000018488)	ENSPPYG00000041487	GSR (ENSPPYG00000018489)	UBXN8 (ENSPPYG00000018490)	PPP2CB (ENSPPYG00000018491)	TEX15 (ENSPPYG00000018492)	PURG (ENSPPYG00000018493)
Platyrrhini	ANCESTRAL SPECIES	27	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764.g.a.a #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145.cb.a.a.a #23	ENSGT00390000013696 #24	ENSGT00910000147890	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00910000146962	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35
Mas night monkey	MODERN SPECIES	599	PDCD7 (ENSANAG00000020593)	CLPX (ENSANAG00000023812)	CILP (ENSANAG00000022242) #7	PARP16 (ENSANAG00000026820) #8	IGDCC3 (ENSANAG00000021787) #10	IGDCC4 (ENSANAG00000026571) #11	DPP8 (ENSANAG00000038141) #12	ENSANAG00000026926 #13	INTS14 (ENSANAG00000038417) #14	SLC24A1 (ENSANAG00000016940) #15	DENND4A (ENSANAG00000037563) #16	RAB11A (ENSANAG00000008429) #18	MEGF11 (ENSANAG00000031211) #19	DIS3L (ENSANAG00000024523) #20	ENSANAG00000030739 #21	MAP2K1 (ENSANAG00000023179) #22	ENSANAG00000023149	ENSANAG00000029866 #23	ZWILCH (ENSANAG00000037776) #24	LCTL (ENSANAG00000029715) #25	ENSANAG00000038383	IL33 (ENSANAG00000019780)	ENSANAG00000033312	KIAA2026 (ENSANAG00000028777)	MLANA (ENSANAG00000036926)	ERMP1 (ENSANAG00000034115)	RIC1 (ENSANAG00000037454)	ENSANAG00000025398	PDCD1LG2 (ENSANAG00000020809)	ENSANAG00000019149	CD274 (ENSANAG00000028618)
Cebidae	ANCESTRAL SPECIES	29	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00940000170330	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145.cb.a.a.a #23	ENSGT00390000013696 #24	ENSGT00910000147890	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00910000146962	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35
Marmoset	MODERN SPECIES	1	CLPX (ENSCJAG00000006870)	CILP (ENSCJAG00000047691) #7	PARP16 (ENSCJAG00000006929) #8	IGDCC3 (ENSCJAG00000006940) #10	IGDCC4 (ENSCJAG00000006951) #11	DPP8 (ENSCJAG00000006987) #12	HACD3 (ENSCJAG00000007084) #13	INTS14 (ENSCJAG00000007118) #14	SLC24A1 (ENSCJAG00000007180) #15	DENND4A (ENSCJAG00000007209) #16	RAB11A (ENSCJAG00000042037) #18	ENSCJAG00000083582	MEGF11 (ENSCJAG00000007353) #19	DIS3L (ENSCJAG00000007411) #20	ENSCJAG00000085355	MAP2K1 (ENSCJAG00000007460) #22	SNAPC5 (ENSCJAG00000070895)	ENSCJAG00000007491 #23	ZWILCH (ENSCJAG00000007524) #24	LCTL (ENSCJAG00000007558) #25	SMAD6 (ENSCJAG00000044644) #26	SMAD3 (ENSCJAG00000002088) #27	AAGAB (ENSCJAG00000002113) #28	IQCH (ENSCJAG00000002130) #29	ENSCJAG00000051609	ENSCJAG00000073121	C15orf61 (ENSCJAG00000054412) #30	MAP2K5 (ENSCJAG00000002156) #32	SKOR1 (ENSCJAG00000002196) #33	PIAS1 (ENSCJAG00000002224) #34	CALML4 (ENSCJAG00000002243) #35
Cebidae_a	ANCESTRAL SPECIES	39	ENSGT00390000008092.b	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145.cb.a.a.a #23	ENSGT00390000013696 #24	ENSGT00910000147890	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00910000146962	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35
Bolivian squirrel monkey	MODERN SPECIES	76																MAP2K1 (ENSSBOG00000023083) #22	SNAPC5 (ENSSBOG00000028815)	ENSSBOG00000015863 #23	ZWILCH (ENSSBOG00000033149) #24	ENSSBOG00000031231	LCTL (ENSSBOG00000023227) #25	ENSSBOG00000022363 #26	SMAD3 (ENSSBOG00000020894) #27	AAGAB (ENSSBOG00000035741) #28	IQCH (ENSSBOG00000024935) #29	C15orf61 (ENSSBOG00000022188) #30	MAP2K5 (ENSSBOG00000028179) #32	SKOR1 (ENSSBOG00000031705) #33	ENSSBOG00000032111	PIAS1 (ENSSBOG00000030212) #34	CALML4 (ENSSBOG00000031073) #35
Capuchin	DUPLICATION
Capuchin	MODERN SPECIES	248				IL17A (ENSCCAG00000021789)	PKHD1 (ENSCCAG00000004027)	TFAP2B (ENSCCAG00000036297)	TFAP2D (ENSCCAG00000027869)	DEFB110 (ENSCCAG00000030485)	DEFB113 (ENSCCAG00000014271)	DEFB114 (ENSCCAG00000027397)	CRISP1 (ENSCCAG00000024689)	PGK2 (ENSCCAG00000004646)	CRISP3 (ENSCCAG00000027207)	CRISP2 (ENSCCAG00000035454)	RHAG (ENSCCAG00000027136)	MAP2K1 (ENSCCAG00000024279) #22	SNAPC5 (ENSCCAG00000020529)	ENSCCAG00000022533 #23	ZWILCH (ENSCCAG00000027333) #24	LCTL (ENSCCAG00000000633) #25	SMAD6 (ENSCCAG00000026913) #26	SMAD3 (ENSCCAG00000020767) #27	AAGAB (ENSCCAG00000024283) #28
Capuchin	MODERN SPECIES	485	PDCD7 (ENSCCAG00000026810)	ENSCCAG00000028918	CILP (ENSCCAG00000021521) #7	PARP16 (ENSCCAG00000032095) #8	IGDCC3 (ENSCCAG00000029122) #10	IGDCC4 (ENSCCAG00000034061) #11	DPP8 (ENSCCAG00000023015) #12	HACD3 (ENSCCAG00000037841) #13	INTS14 (ENSCCAG00000030079) #14	SLC24A1 (ENSCCAG00000024899) #15	DENND4A (ENSCCAG00000036137) #16	ENSCCAG00000032078	RAB11A (ENSCCAG00000021286) #18	MEGF11 (ENSCCAG00000029113) #19	DIS3L (ENSCCAG00000037964) #20	ENSCCAG00000018227 #22
Laurasiatheria	ANCESTRAL SPECIES	3	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00910000147890	ENSGT00910000147041	ENSGT00940000158146 #26	ENSGT00860000136046	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00910000146962	ENSGT00960000188521	ENSGT00940000157505 #32
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000153487.b.b #22
Common shrew	MODERN SPECIES	4987																ENSSARG00000001594 #22
Laurasiatheria_a	ANCESTRAL SPECIES	2	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00910000147890	ENSGT00910000147041	ENSGT00940000158146 #26	ENSGT00860000136046	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00910000146962	ENSGT00960000188521	ENSGT00940000157505 #32
Laurasiatheria_b	ANCESTRAL SPECIES	3	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00910000147041	ENSGT00940000158146 #26	ENSGT00860000136046	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00910000146962	ENSGT00960000188521	ENSGT00940000157505 #32	ENSGT00940000158440 #33
Carnivora	ANCESTRAL SPECIES		ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00860000136046	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00910000146962	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35
Felidae	ANCESTRAL SPECIES	1	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00860000136046	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00910000146962	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35
Panthera	ANCESTRAL SPECIES	3	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000063881.a.b	ENSGT00940000154450	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00860000136046	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00910000146962	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35
Panthera_a	ANCESTRAL SPECIES	15	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000063881.a.b	ENSGT00940000154450	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00860000136046	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00910000146962	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35
leopard	MODERN SPECIES	7	CLPX (ENSPPRG00000023475)	CILP (ENSPPRG00000023132) #7	PARP16 (ENSPPRG00000022890) #8	IGDCC3 (ENSPPRG00000022706) #10	IGDCC4 (ENSPPRG00000000219) #11	DPP8 (ENSPPRG00000001353) #12	ENSPPRG00000001945	HACD3 (ENSPPRG00000003107) #13	INTS14 (ENSPPRG00000003935) #14	SLC24A1 (ENSPPRG00000006682) #15	DENND4A (ENSPPRG00000009637) #16	RAB11A (ENSPPRG00000010471) #18	MEGF11 (ENSPPRG00000014069) #19	DIS3L (ENSPPRG00000019912) #20	TIPIN (ENSPPRG00000022554) #21	MAP2K1 (ENSPPRG00000022608) #22	SNAPC5 (ENSPPRG00000000465)	ENSPPRG00000000610 #23	ZWILCH (ENSPPRG00000001390) #24	LCTL (ENSPPRG00000002315) #25	SMAD6 (ENSPPRG00000002502) #26	SMAD3 (ENSPPRG00000003306) #27	AAGAB (ENSPPRG00000003564) #28	IQCH (ENSPPRG00000005647) #29	C15orf61 (ENSPPRG00000005929) #30	ENSPPRG00000005987	MAP2K5 (ENSPPRG00000006923) #32	SKOR1 (ENSPPRG00000007828) #33	PIAS1 (ENSPPRG00000008695) #34	CALML4 (ENSPPRG00000009014) #35	CLN6 (ENSPPRG00000011593) #36
lion	MODERN SPECIES	6	CLPX (ENSPLOG00000010665)	CILP (ENSPLOG00000010583) #7	PARP16 (ENSPLOG00000010532) #8	IGDCC3 (ENSPLOG00000010421) #10	IGDCC4 (ENSPLOG00000010305) #11	DPP8 (ENSPLOG00000010171) #12	ENSPLOG00000010122	HACD3 (ENSPLOG00000009943) #13	INTS14 (ENSPLOG00000009755) #14	SLC24A1 (ENSPLOG00000009464) #15	DENND4A (ENSPLOG00000008717) #16	RAB11A (ENSPLOG00000008488) #18	MEGF11 (ENSPLOG00000008100) #19	DIS3L (ENSPLOG00000007929) #20	TIPIN (ENSPLOG00000007894) #21	MAP2K1 (ENSPLOG00000007836) #22	SNAPC5 (ENSPLOG00000007792)	RPL4 (ENSPLOG00000007707) #23	ZWILCH (ENSPLOG00000007600) #24	LCTL (ENSPLOG00000007528) #25	SMAD6 (ENSPLOG00000007495) #26	ENSPLOG00000007093	SMAD3 (ENSPLOG00000007068) #27	AAGAB (ENSPLOG00000007046) #28	IQCH (ENSPLOG00000006897) #29	C15orf61 (ENSPLOG00000006817) #30	MAP2K5 (ENSPLOG00000006228) #32	SKOR1 (ENSPLOG00000005020) #33	PIAS1 (ENSPLOG00000004975) #34	CALML4 (ENSPLOG00000004955) #35	CLN6 (ENSPLOG00000004871) #36
Tiger	MODERN SPECIES	204	CLPX (ENSPTIG00000022022)	CILP (ENSPTIG00000001633) #7	PARP16 (ENSPTIG00000004433) #8	IGDCC3 (ENSPTIG00000005842) #10	IGDCC4 (ENSPTIG00000006772) #11	DPP8 (ENSPTIG00000008731) #12	ENSPTIG00000012013	HACD3 (ENSPTIG00000012698) #13	INTS14 (ENSPTIG00000014987) #14	SLC24A1 (ENSPTIG00000017335) #15	DENND4A (ENSPTIG00000018874) #16	RAB11A (ENSPTIG00000021637) #18	MEGF11 (ENSPTIG00000001273) #19	DIS3L (ENSPTIG00000009042) #20	ENSPTIG00000009826	MAP2K1 (ENSPTIG00000010070) #22	SNAPC5 (ENSPTIG00000010493)	ENSPTIG00000010784 #23	ZWILCH (ENSPTIG00000011456) #24	LCTL (ENSPTIG00000012036) #25	SMAD3 (ENSPTIG00000012606) #27	AAGAB (ENSPTIG00000013747) #28	IQCH (ENSPTIG00000014096) #29	ENSPTIG00000015816	MAP2K5 (ENSPTIG00000016073) #32	ENSPTIG00000017654	PIAS1 (ENSPTIG00000017759) #34	CALML4 (ENSPTIG00000018784) #35	CLN6 (ENSPTIG00000019082) #36	FEM1B (ENSPTIG00000019928) #37	ITGA11 (ENSPTIG00000020061)
Cat	MODERN SPECIES	237	PDCD7 (ENSFCAG00000040312)	CLPX (ENSFCAG00000026710)	CILP (ENSFCAG00000011462) #7	PARP16 (ENSFCAG00000011463) #8	IGDCC3 (ENSFCAG00000011465) #10	IGDCC4 (ENSFCAG00000011466) #11	DPP8 (ENSFCAG00000025415) #12	HACD3 (ENSFCAG00000008691) #13	INTS14 (ENSFCAG00000008692) #14	SLC24A1 (ENSFCAG00000008693) #15	DENND4A (ENSFCAG00000008694) #16	RAB11A (ENSFCAG00000030174) #18	MEGF11 (ENSFCAG00000003091) #19	DIS3L (ENSFCAG00000029869) #20	TIPIN (ENSFCAG00000035191) #21	MAP2K1 (ENSFCAG00000028389) #22	SNAPC5 (ENSFCAG00000012291)	RPL4 (ENSFCAG00000012293) #23	ZWILCH (ENSFCAG00000012294) #24	LCTL (ENSFCAG00000012298) #25	SMAD6 (ENSFCAG00000012300) #26	SMAD3 (ENSFCAG00000027081) #27	AAGAB (ENSFCAG00000004418) #28	IQCH (ENSFCAG00000004419) #29	CB3H15orf61 (ENSFCAG00000040546) #30	MAP2K5 (ENSFCAG00000004420) #32	SKOR1 (ENSFCAG00000043709) #33	PIAS1 (ENSFCAG00000018490) #34	CALML4 (ENSFCAG00000006497) #35	CLN6 (ENSFCAG00000025647) #36	ENSFCAG00000049632
Caniformia	ANCESTRAL SPECIES	12	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Canidae	ANCESTRAL SPECIES	15	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00950000185603	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218.m #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36
Canis_lupus	ANCESTRAL SPECIES	17	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145.lc.a #23	ENSGT00390000013696 #24	ENSGT00950000185603	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218.m #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36
Dingo	MODERN SPECIES	205	CLPX (ENSCAFG00020008792)	CILP (ENSCAFG00020008785) #7	ENSCAFG00020008780	PARP16 (ENSCAFG00020008773) #8	IGDCC3 (ENSCAFG00020008743) #10	IGDCC4 (ENSCAFG00020008701) #11	DPP8 (ENSCAFG00020008685) #12	HACD3 (ENSCAFG00020008678) #13	INTS14 (ENSCAFG00020008669) #14	SLC24A1 (ENSCAFG00020008562) #15	DENND4A (ENSCAFG00020008501) #16	RAB11A (ENSCAFG00020008478) #18	MEGF11 (ENSCAFG00020008443) #19	DIS3L (ENSCAFG00020008413) #20	TIPIN (ENSCAFG00020008398) #21	MAP2K1 (ENSCAFG00020008392) #22	SNAPC5 (ENSCAFG00020008387)	ENSCAFG00020008355 #23	ZWILCH (ENSCAFG00020008215) #24	LCTL (ENSCAFG00020008195) #25	SMAD6 (ENSCAFG00020008193) #26	SMAD3 (ENSCAFG00020008177) #27	ENSCAFG00020008170 #28	IQCH (ENSCAFG00020008118) #29	C15orf61 (ENSCAFG00020008094) #30	MAP2K5 (ENSCAFG00020008071) #32	SKOR1 (ENSCAFG00020008049) #33	PIAS1 (ENSCAFG00020008026) #34	CALML4 (ENSCAFG00020008020) #35	CLN6 (ENSCAFG00020008011) #36	FEM1B (ENSCAFG00020008006) #37
Dog	MODERN SPECIES	23	CILP (ENSCAFG00845025013) #7	AVPI1 (ENSCAFG00845025073)	PARP16 (ENSCAFG00845025116) #8	IGDCC3 (ENSCAFG00845025254) #10	IGDCC4 (ENSCAFG00845025408) #11	DPP8 (ENSCAFG00845025611) #12	HACD3 (ENSCAFG00845025953) #13	INTS14 (ENSCAFG00845026081) #14	SLC24A1 (ENSCAFG00845026323) #15	DENND4A (ENSCAFG00845026536) #16	RAB11A (ENSCAFG00845027320) #18	ENSCAFG00845014976 #19	DIS3L (ENSCAFG00845015076) #20	TIPIN (ENSCAFG00845015229) #21	ENSCAFG00845015268	MAP2K1 (ENSCAFG00845015371) #22	SNAPC5 (ENSCAFG00845015512)	RPL4 (ENSCAFG00845015609) #23	ZWILCH (ENSCAFG00845015845) #24	ENSCAFG00845016122	LCTL (ENSCAFG00845016168) #25	SMAD6 (ENSCAFG00845016415) #26	SMAD3 (ENSCAFG00845016639) #27	AAGAB (ENSCAFG00845016886) #28	IQCH (ENSCAFG00845017088) #29	C15orf61 (ENSCAFG00845017380) #30	MAP2K5 (ENSCAFG00845017514) #32	SKOR1 (ENSCAFG00845017976) #33	PIAS1 (ENSCAFG00845018319) #34	CALML4 (ENSCAFG00845018790) #35	CLN6 (ENSCAFG00845018935) #36
Red fox	MODERN SPECIES		PDCD7 (ENSVVUG00000013851)	CLPX (ENSVVUG00000013882)	CILP (ENSVVUG00000014204) #7	PARP16 (ENSVVUG00000014214) #8	IGDCC3 (ENSVVUG00000014224) #10	IGDCC4 (ENSVVUG00000014242) #11	DPP8 (ENSVVUG00000014284) #12	HACD3 (ENSVVUG00000014290) #13	INTS14 (ENSVVUG00000014296) #14	SLC24A1 (ENSVVUG00000014313) #15	DENND4A (ENSVVUG00000014392) #16	RAB11A (ENSVVUG00000014435) #18	MEGF11 (ENSVVUG00000014448) #19	DIS3L (ENSVVUG00000014492) #20	TIPIN (ENSVVUG00000014501) #21	MAP2K1 (ENSVVUG00000014514) #22	SNAPC5 (ENSVVUG00000014527)	ENSVVUG00000014531 #23	ZWILCH (ENSVVUG00000014559) #24	ENSVVUG00000014578	LCTL (ENSVVUG00000014585) #25	ENSVVUG00000014612	ENSVVUG00000014615	SMAD6 (ENSVVUG00000014625) #26	SMAD3 (ENSVVUG00000014647) #27	AAGAB (ENSVVUG00000014658) #28	IQCH (ENSVVUG00000014665) #29	C15orf61 (ENSVVUG00000014693) #30	MAP2K5 (ENSVVUG00000014703) #32	ENSVVUG00000014708 #33	PIAS1 (ENSVVUG00000014713) #34
Caniformia_b	ANCESTRAL SPECIES	15	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Mustelinae	ANCESTRAL SPECIES	66	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
American mink	MODERN SPECIES	46	CLPX (ENSNVIG00000017631)	CILP (ENSNVIG00000017597) #7	PARP16 (ENSNVIG00000017580) #8	ENSNVIG00000017573	IGDCC3 (ENSNVIG00000017539) #10	IGDCC4 (ENSNVIG00000017489) #11	DPP8 (ENSNVIG00000017340) #12	HACD3 (ENSNVIG00000017259) #13	CO044 (ENSNVIG00000017199) #14	SLC24A1 (ENSNVIG00000017089) #15	DENND4A (ENSNVIG00000016862) #16	RAB11A (ENSNVIG00000016821) #18	MEGF11 (ENSNVIG00000016583) #19	DIS3L (ENSNVIG00000016535) #20	TIPIN (ENSNVIG00000016513) #21	MAP2K1 (ENSNVIG00000016498) #22	SNAPC5 (ENSNVIG00000016483)	RPL4 (ENSNVIG00000016412) #23	ZWILC (ENSNVIG00000016326) #24	LCTL (ENSNVIG00000016282) #25	SMAD6 (ENSNVIG00000016271) #26	SMAD3 (ENSNVIG00000016249) #27	AAGAB (ENSNVIG00000016212) #28	IQCH (ENSNVIG00000016136) #29	MP2K5 (ENSNVIG00000015958) #32	SKOR1 (ENSNVIG00000015923) #33	PIAS1 (ENSNVIG00000015868) #34	CALML4 (ENSNVIG00000015844) #35	CLN6 (ENSNVIG00000015741) #36	FEM1B (ENSNVIG00000015730) #37	ITGA11 (ENSNVIG00000015665)
Ferret	MODERN SPECIES	228	PDCD7 (ENSMPUG00000000523)	CLPX (ENSMPUG00000000518)	CILP (ENSMPUG00000000506) #7	PARP16 (ENSMPUG00000000505) #8	IGDCC3 (ENSMPUG00000000488) #10	IGDCC4 (ENSMPUG00000000484) #11	DPP8 (ENSMPUG00000000480) #12	HACD3 (ENSMPUG00000000475) #13	INTS14 (ENSMPUG00000000472) #14	SLC24A1 (ENSMPUG00000000468) #15	DENND4A (ENSMPUG00000000388) #16	RAB11A (ENSMPUG00000000387) #18	MEGF11 (ENSMPUG00000000383) #19	DIS3L (ENSMPUG00000000378) #20	TIPIN (ENSMPUG00000000365) #21	MAP2K1 (ENSMPUG00000000363) #22	SNAPC5 (ENSMPUG00000000356)	ENSMPUG00000000337 #23	ZWILCH (ENSMPUG00000000333) #24	LCTL (ENSMPUG00000000312) #25	ENSMPUG00000000309	SMAD6 (ENSMPUG00000000307) #26	SMAD3 (ENSMPUG00000000304) #27	AAGAB (ENSMPUG00000000292) #28	IQCH (ENSMPUG00000000289) #29	C15orf61 (ENSMPUG00000000287) #30	MAP2K5 (ENSMPUG00000000285) #32	SKOR1 (ENSMPUG00000000283) #33	PIAS1 (ENSMPUG00000000281) #34	CALML4 (ENSMPUG00000000270) #35	CLN6 (ENSMPUG00000000267) #36
Ursidae	ANCESTRAL SPECIES	21	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B.p #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Giant Panda	MODERN SPECIES	15	PDCD7 (ENSAMEG00000027984)	CLPX (ENSAMEG00000002810)	CILP (ENSAMEG00000002854) #7	PARP16 (ENSAMEG00000002861) #8	IGDCC3 (ENSAMEG00000002876) #10	IGDCC4 (ENSAMEG00000002889) #11	DPP8 (ENSAMEG00000002924) #12	HACD3 (ENSAMEG00000002983) #13	INTS14 (ENSAMEG00000003002) #14	SLC24A1 (ENSAMEG00000003029) #15	DENND4A (ENSAMEG00000003046) #16	RAB11A (ENSAMEG00000003119) #18	MEGF11 (ENSAMEG00000003131) #19	DIS3L (ENSAMEG00000003166) #20	TIPIN (ENSAMEG00000027725) #21	MAP2K1 (ENSAMEG00000003218) #22	SNAPC5 (ENSAMEG00000003249)	ENSAMEG00000029170 #23	ZWILCH (ENSAMEG00000003251) #24	LCTL (ENSAMEG00000003300) #25	SMAD6 (ENSAMEG00000029979) #26	SMAD3 (ENSAMEG00000003318) #27	AAGAB (ENSAMEG00000028433) #28	IQCH (ENSAMEG00000005044) #29	C15orf61 (ENSAMEG00000029099) #30	MAP2K5 (ENSAMEG00000005013) #32	SKOR1 (ENSAMEG00000004996) #33	PIAS1 (ENSAMEG00000014025) #34	CALML4 (ENSAMEG00000014054) #35	CLN6 (ENSAMEG00000014058) #36	FEM1B (ENSAMEG00000014073) #37
Ursus	ANCESTRAL SPECIES	37	ENSGT00390000008092.b	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B.p #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Polar bear	MODERN SPECIES	320	ENSUMAG00000012533	CLPX (ENSUMAG00000012513)	CILP (ENSUMAG00000012508) #7	PARP16 (ENSUMAG00000012504) #8	IGDCC3 (ENSUMAG00000012461) #10	ENSUMAG00000012451 #11	DPP8 (ENSUMAG00000012441) #12	HACD3 (ENSUMAG00000012379) #13	INTS14 (ENSUMAG00000012368) #14	SLC24A1 (ENSUMAG00000012325) #15	DENND4A (ENSUMAG00000012290) #16	RAB11A (ENSUMAG00000012273) #18	MEGF11 (ENSUMAG00000012242) #19	DIS3L (ENSUMAG00000012227) #20	TIPIN (ENSUMAG00000012215) #21	MAP2K1 (ENSUMAG00000012208) #22	RPL4 (ENSUMAG00000012178) #23	ZWILCH (ENSUMAG00000012145) #24	LCTL (ENSUMAG00000012072) #25	ENSUMAG00000012057 #27	AAGAB (ENSUMAG00000012048) #28	IQCH (ENSUMAG00000012020) #29	C15orf61 (ENSUMAG00000012016) #30	MAP2K5 (ENSUMAG00000011992) #32	ENSUMAG00000011983	PIAS1 (ENSUMAG00000011980) #34	CALML4 (ENSUMAG00000011979) #35	ENSUMAG00000011962 #36	FEM1B (ENSUMAG00000011958) #37	ITGA11 (ENSUMAG00000011792)	CORO2B (ENSUMAG00000011755)
American black bear	DUPLICATION
American black bear	MODERN SPECIES	1271																ENSUAMG00000023229 #22
American black bear	MODERN SPECIES	1272																ENSUAMG00000023250 #22	SNAPC5 (ENSUAMG00000023247)	RPL4 (ENSUAMG00000023236) #23	ZWILCH (ENSUAMG00000023230) #24
Laurasiatheria_c	ANCESTRAL SPECIES	1	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914.db.a #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00910000147041	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36
Chiroptera	ANCESTRAL SPECIES	17	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914.db.a #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00910000147041	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36
Microchiroptera	ANCESTRAL SPECIES	20	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914.db.a #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00910000147041	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36
Greater horseshoe bat	MODERN SPECIES	24	PDCD7 (ENSRFEG00010007642)	CLPX (ENSRFEG00010007597)	CILP (ENSRFEG00010007498) #7	PARP16 (ENSRFEG00010007410) #8	IGDCC3 (ENSRFEG00010007254) #10	IGDCC4 (ENSRFEG00010007212) #11	DPP8 (ENSRFEG00010007043) #12	HACD3 (ENSRFEG00010004527) #13	INTS14 (ENSRFEG00010004454) #14	SLC24A1 (ENSRFEG00010004368) #15	DENND4A (ENSRFEG00010004242) #16	ENSRFEG00010004168 #18	MEGF11 (ENSRFEG00010004126) #19	DIS3L (ENSRFEG00010004058) #20	TIPIN (ENSRFEG00010004026) #21	MAP2K1 (ENSRFEG00010004010) #22	SNAPC5 (ENSRFEG00010003999)	ENSRFEG00010003980 #23	ZWILCH (ENSRFEG00010003952) #24	LCTL (ENSRFEG00010003917) #25	ENSRFEG00010003900	SMAD6 (ENSRFEG00010003887) #26	SMAD3 (ENSRFEG00010003872) #27	AAGAB (ENSRFEG00010003850) #28	IQCH (ENSRFEG00010003782) #29	MAP2K5 (ENSRFEG00010003624) #32	SKOR1 (ENSRFEG00010003500) #33	ENSRFEG00010003474	ENSRFEG00010003431 #34	ENSRFEG00010003398 #35	CLN6 (ENSRFEG00010003356) #36
Microbat	MODERN SPECIES	1052	CILP (ENSMLUG00000008793) #7	ENSMLUG00000008817 #8	ENSMLUG00000008591	ENSMLUG00000028492	ENSMLUG00000028574	IGDCC3 (ENSMLUG00000000621) #10	IGDCC4 (ENSMLUG00000000632) #11	DPP8 (ENSMLUG00000009434) #12	ENSMLUG00000015087 #13	INTS14 (ENSMLUG00000015095) #14	SLC24A1 (ENSMLUG00000015104) #15	DENND4A (ENSMLUG00000015110) #16	ENSMLUG00000008820 #18	MEGF11 (ENSMLUG00000008226) #19	ENSMLUG00000022949 #20	MAP2K1 (ENSMLUG00000011790) #22	SNAPC5 (ENSMLUG00000011803)	ENSMLUG00000011809 #23	ZWILCH (ENSMLUG00000011819) #24	LCTL (ENSMLUG00000011849) #25
Megabat	MODERN SPECIES	2135																MAP2K1 (ENSPVAG00000000065) #22	SNAPC5 (ENSPVAG00000000067)	RPL4 (ENSPVAG00000000068) #23	ZWILCH (ENSPVAG00000000070) #24	LCTL (ENSPVAG00000000072) #25
Equus	ANCESTRAL SPECIES	4	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914.eb #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Horse	MODERN SPECIES		PDCD7 (ENSECAG00000026989)	CLPX (ENSECAG00000016127)	CILP (ENSECAG00000014515) #7	PARP16 (ENSECAG00000011251) #8	IGDCC3 (ENSECAG00000024763) #10	IGDCC4 (ENSECAG00000024668) #11	DPP8 (ENSECAG00000010846) #12	HACD3 (ENSECAG00000023082) #13	INTS14 (ENSECAG00000018884) #14	SLC24A1 (ENSECAG00000013327) #15	DENND4A (ENSECAG00000024306) #16	RAB11A (ENSECAG00000023865) #18	MEGF11 (ENSECAG00000000706) #19	DIS3L (ENSECAG00000007302) #20	TIPIN (ENSECAG00000004590) #21	MAP2K1 (ENSECAG00000010640) #22	RPL4 (ENSECAG00000023179) #23	ZWILCH (ENSECAG00000018367) #24	LCTL (ENSECAG00000014254) #25	SMAD6 (ENSECAG00000013706) #26	SMAD3 (ENSECAG00000020259) #27	ENSECAG00000047849 #29	AAGAB (ENSECAG00000013142) #28	IQCH (ENSECAG00000007674) #29	ENSECAG00000029823	MAP2K5 (ENSECAG00000022411) #32	SKOR1 (ENSECAG00000036584) #33	ENSECAG00000005747	PIAS1 (ENSECAG00000007993) #34	CALML4 (ENSECAG00000021844) #35	CLN6 (ENSECAG00000016991) #36
Donkey	MODERN SPECIES	11	PDCD7 (ENSEASG00005006486)	CLPX (ENSEASG00005006483)	CILP (ENSEASG00005006479) #7	PARP16 (ENSEASG00005030198) #8	IGDCC3 (ENSEASG00005006470) #10	IGDCC4 (ENSEASG00005006466) #11	DPP8 (ENSEASG00005006459) #12	HACD3 (ENSEASG00005006456) #13	INTS14 (ENSEASG00005006454) #14	SLC24A1 (ENSEASG00005006448) #15	DENND4A (ENSEASG00005006437) #16	RAB11A (ENSEASG00005006431) #18	MEGF11 (ENSEASG00005006429) #19	DIS3L (ENSEASG00005006407) #20	TIPIN (ENSEASG00005006396) #21	MAP2K1 (ENSEASG00005006387) #22	SNAPC5 (ENSEASG00005006384)	RPL4 (ENSEASG00005006373) #23	ZWILCH (ENSEASG00005006339) #24	LCTL (ENSEASG00005006319) #25	ENSEASG00005025450 #26	SMAD3 (ENSEASG00005006315) #27	AAGAB (ENSEASG00005006311) #28	IQCH (ENSEASG00005006301) #29	ENSEASG00005006297 #30	MAP2K5 (ENSEASG00005006290) #32	SKOR1 (ENSEASG00005006277) #33	ENSEASG00005006267	PIAS1 (ENSEASG00005006262) #34	CALML4 (ENSEASG00005033729) #35	CLN6 (ENSEASG00005034200) #36
Artiodactyla	ANCESTRAL SPECIES	3	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Suina	ANCESTRAL SPECIES	12	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Pig	MODERN SPECIES		PDCD7 (ENSSSCG00000004926)	CLPX (ENSSSCG00000004927)	CILP (ENSSSCG00000004928) #7	PARP16 (ENSSSCG00000004929) #8	IGDCC3 (ENSSSCG00000054127) #10	IGDCC4 (ENSSSCG00000004931) #11	DPP8 (ENSSSCG00000004934) #12	HACD3 (ENSSSCG00000004935) #13	INTS14 (ENSSSCG00000004936) #14	SLC24A1 (ENSSSCG00000004937) #15	DENND4A (ENSSSCG00000004938) #16	RAB11A (ENSSSCG00000032312) #18	MEGF11 (ENSSSCG00000004939) #19	DIS3L (ENSSSCG00000004941) #20	TIPIN (ENSSSCG00000004942) #21	MAP2K1 (ENSSSCG00000004943) #22	SNAPC5 (ENSSSCG00000038941)	RPL4 (ENSSSCG00000004945) #23	ZWILCH (ENSSSCG00000004946) #24	ENSSSCG00000051767	LCTL (ENSSSCG00000004947) #25	SMAD6 (ENSSSCG00000004948) #26	SMAD3 (ENSSSCG00000004952) #27	AAGAB (ENSSSCG00000004951) #28	ENSSSCG00000057448 #29	ENSSSCG00000034963 #29	C15orf61 (ENSSSCG00000004954) #30	MAP2K5 (ENSSSCG00000004955) #32	SKOR1 (ENSSSCG00000004956) #33	PIAS1 (ENSSSCG00000004958) #34	CALML4 (ENSSSCG00000026517) #35
Chacoan peccary	MODERN SPECIES	786	PDCD7 (ENSCWAG00000019076)	CLPX (ENSCWAG00000019024)	CILP (ENSCWAG00000019001) #7	PARP16 (ENSCWAG00000018965) #8	IGDCC3 (ENSCWAG00000018736) #10	IGDCC4 (ENSCWAG00000018683) #11	DPP8 (ENSCWAG00000018161) #12	HACD3 (ENSCWAG00000017975) #13	INTS14 (ENSCWAG00000017595) #14	SLC24A1 (ENSCWAG00000017106) #15	DENND4A (ENSCWAG00000016363) #16	RAB11A (ENSCWAG00000016259) #18	MEGF11 (ENSCWAG00000015726) #19	DIS3L (ENSCWAG00000015597) #20	TIPIN (ENSCWAG00000015560) #21	MAP2K1 (ENSCWAG00000015519) #22	SNAPC5 (ENSCWAG00000015485)	RPL4 (ENSCWAG00000015376) #23	ZWILCH (ENSCWAG00000015266) #24	LCTL (ENSCWAG00000015109) #25	SMAD6 (ENSCWAG00000015079) #26	SMAD3 (ENSCWAG00000015026) #27	AAGAB (ENSCWAG00000014993) #28	IQCH (ENSCWAG00000014432) #29	C15orf61 (ENSCWAG00000014382) #30	MAP2K5 (ENSCWAG00000013886) #32	SKOR1 (ENSCWAG00000013676) #33	PIAS1 (ENSCWAG00000013465) #34	CALML4 (ENSCWAG00000013422) #35	CLN6 (ENSCWAG00000013181) #36	FEM1B (ENSCWAG00000013140) #37
Artiodactyla_a	ANCESTRAL SPECIES	2	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00910000147890	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36
Camelidae	ANCESTRAL SPECIES	83	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00910000147890	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36
Arabian camel	MODERN SPECIES	32	PDCD7 (ENSCDRG00005001491)	CLPX (ENSCDRG00005001522)	CILP (ENSCDRG00005001549) #7	PARP16 (ENSCDRG00005001584) #8	IGDCC3 (ENSCDRG00005001651) #10	IGDCC4 (ENSCDRG00005001726) #11	DPP8 (ENSCDRG00005001839) #12	HACD3 (ENSCDRG00005001929) #13	INTS14 (ENSCDRG00005001994) #14	SLC24A1 (ENSCDRG00005002129) #15	DENND4A (ENSCDRG00005002286) #16	RAB11A (ENSCDRG00005002443) #18	MEGF11 (ENSCDRG00005002479) #19	DIS3L (ENSCDRG00005002526) #20	TIPIN (ENSCDRG00005002562) #21	MAP2K1 (ENSCDRG00005002580) #22	SNAPC5 (ENSCDRG00005002604)	ENSCDRG00005002627 #23	ZWILCH (ENSCDRG00005002673) #24	LCTL (ENSCDRG00005002712) #25	ENSCDRG00005002745	ENSCDRG00005002755 #26	SMAD3 (ENSCDRG00005002780) #27	AAGAB (ENSCDRG00005002843) #28	IQCH (ENSCDRG00005002929) #29	C15orf61 (ENSCDRG00005003109) #30	MAP2K5 (ENSCDRG00005003152) #32	PIAS1 (ENSCDRG00005003494) #34	ENSCDRG00005003580	CALML4 (ENSCDRG00005003629) #35	CLN6 (ENSCDRG00005003662) #36
Alpaca	MODERN SPECIES	1731															DIS3L (ENSVPAG00000006742) #20	MAP2K1 (ENSVPAG00000006743) #22	SNAPC5 (ENSVPAG00000006745)	RPL4 (ENSVPAG00000006746) #23	ZWILCH (ENSVPAG00000006747) #24	LCTL (ENSVPAG00000006748) #25
Artiodactyla_b	ANCESTRAL SPECIES	2	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145.xc #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00910000147890	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36
Cetacea	ANCESTRAL SPECIES	2	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00390000012563.i.a	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145.xc.b #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00910000147890	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36
Odontoceti	ANCESTRAL SPECIES	2	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00390000012563.i.a	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145.xc.b #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00910000147890	ENSGT00940000158146 #26	ENSGT00390000000134.b.p.b	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35
Odontoceti_a	ANCESTRAL SPECIES	2	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00390000012563.i.a	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145.xc.b #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00910000147890	ENSGT00940000158146 #26	ENSGT00390000000134.b.p.b	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35
Odontoceti_b	ANCESTRAL SPECIES	2	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00390000012563.i.a	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145.xc.b #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00910000147890	ENSGT00940000158146 #26	ENSGT00390000000134.b.p.b	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35
Monodontidae	ANCESTRAL SPECIES	27	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00390000012563.i.a	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145.xc.b #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00910000147890	ENSGT00940000158146 #26	ENSGT00390000000134.b.p.b	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT00940000158086	ENSGT00940000157725
Beluga whale	MODERN SPECIES	20	CLPX (ENSDLEG00000008818)	CILP (ENSDLEG00000008922) #7	PARP16 (ENSDLEG00000008951) #8	IGDCC3 (ENSDLEG00000009011) #10	IGDCC4 (ENSDLEG00000009168) #11	DPP8 (ENSDLEG00000009245) #12	HACD3 (ENSDLEG00000009324) #13	INTS14 (ENSDLEG00000009368) #14	SLC24A1 (ENSDLEG00000009406) #15	DENND4A (ENSDLEG00000009569) #16	RAB11A (ENSDLEG00000009643) #18	MEGF11 (ENSDLEG00000009720) #19	DIS3L (ENSDLEG00000009982) #20	TIPIN (ENSDLEG00000010313) #21	ENSDLEG00000010343	MAP2K1 (ENSDLEG00000010364) #22	SNAPC5 (ENSDLEG00000010421)	RPL4 (ENSDLEG00000010430) #23	ZWILCH (ENSDLEG00000010482) #24	LCTL (ENSDLEG00000010607) #25	ENSDLEG00000010647	ENSDLEG00000010657	SMAD6 (ENSDLEG00000010676) #26	ENSDLEG00000010689	SMAD3 (ENSDLEG00000010707) #27	AAGAB (ENSDLEG00000010803) #28	IQCH (ENSDLEG00000010864) #29	CUNH15orf61 (ENSDLEG00000010984) #30	MAP2K5 (ENSDLEG00000011046) #32	SKOR1 (ENSDLEG00000011320) #33	ENSDLEG00000011378
Narwhal	MODERN SPECIES	308	PDCD7 (ENSMMNG00015006276)	CILP (ENSMMNG00015006369) #7	PARP16 (ENSMMNG00015006524) #8	IGDCC3 (ENSMMNG00015006574) #10	IGDCC4 (ENSMMNG00015006606) #11	DPP8 (ENSMMNG00015006705) #12	HACD3 (ENSMMNG00015006843) #13	INTS14 (ENSMMNG00015006934) #14	SLC24A1 (ENSMMNG00015007028) #15	DENND4A (ENSMMNG00015007114) #16	RAB11A (ENSMMNG00015007170) #18	MEGF11 (ENSMMNG00015007280) #19	DIS3L (ENSMMNG00015007393) #20	TIPIN (ENSMMNG00015007474) #21	ENSMMNG00015007536	MAP2K1 (ENSMMNG00015007579) #22	SNAPC5 (ENSMMNG00015007601)	ENSMMNG00015007652 #23	ZWILCH (ENSMMNG00015007746) #24	LCTL (ENSMMNG00015007784) #25	ENSMMNG00015007816	SMAD6 (ENSMMNG00015007869) #26	ENSMMNG00015007889	SMAD3 (ENSMMNG00015007909) #27	AAGAB (ENSMMNG00015007942) #28	IQCH (ENSMMNG00015008052) #29	C15orf61 (ENSMMNG00015008139) #30	MAP2K5 (ENSMMNG00015008216) #32	SKOR1 (ENSMMNG00015008331) #33	ENSMMNG00015008358	PIAS1 (ENSMMNG00015008373) #34
Vaquita	MODERN SPECIES	11	CLPX (ENSPSNG00000003510)	CILP (ENSPSNG00000003465) #7	PARP16 (ENSPSNG00000003434) #8	IGDCC3 (ENSPSNG00000003386) #10	IGDCC4 (ENSPSNG00000003316) #11	DPP8 (ENSPSNG00000003202) #12	HACD3 (ENSPSNG00000003119) #13	INTS14 (ENSPSNG00000003047) #14	SLC24A1 (ENSPSNG00000002890) #15	DENND4A (ENSPSNG00000002770) #16	ENSPSNG00000002715	RAB11A (ENSPSNG00000002694) #18	MEGF11 (ENSPSNG00000002539) #19	ENSPSNG00000002464 #20	TIPIN (ENSPSNG00000002436) #21	MAP2K1 (ENSPSNG00000002407) #22	SNAPC5 (ENSPSNG00000002388)	ENSPSNG00000002352 #23	ZWILCH (ENSPSNG00000002336) #24	LCTL (ENSPSNG00000002318) #25	ENSPSNG00000002306	SMAD6 (ENSPSNG00000002293) #26	ENSPSNG00000002286	SMAD3 (ENSPSNG00000002263) #27	AAGAB (ENSPSNG00000002239) #28	IQCH (ENSPSNG00000002126) #29	C15orf61 (ENSPSNG00000002043) #30	MAP2K5 (ENSPSNG00000001943) #32	SKOR1 (ENSPSNG00000001839) #33	ENSPSNG00000001804	PIAS1 (ENSPSNG00000001758) #34
Dolphin	MODERN SPECIES	1669														DIS3L (ENSTTRG00000010174) #20	TIPIN (ENSTTRG00000010187) #21	MAP2K1 (ENSTTRG00000010193) #22	SNAPC5 (ENSTTRG00000010201)	RPL4 (ENSTTRG00000010206) #23	ZWILCH (ENSTTRG00000010212) #24	LCTL (ENSTTRG00000010226) #25	SMAD6 (ENSTTRG00000010237) #26
Sperm whale	MODERN SPECIES	2	PDCD7 (ENSPCTG00005013950)	CLPX (ENSPCTG00005014028)	CILP (ENSPCTG00005014102) #7	PARP16 (ENSPCTG00005014147) #8	IGDCC3 (ENSPCTG00005014269) #10	IGDCC4 (ENSPCTG00005014441) #11	DPP8 (ENSPCTG00005014761) #12	HACD3 (ENSPCTG00005015026) #13	INTS14 (ENSPCTG00005015317) #14	SLC24A1 (ENSPCTG00005015689) #15	DENND4A (ENSPCTG00005016168) #16	RAB11A (ENSPCTG00005016434) #18	MEGF11 (ENSPCTG00005016590) #19	DIS3L (ENSPCTG00005017408) #20	TIPIN (ENSPCTG00005017493) #21	MAP2K1 (ENSPCTG00005017538) #22	SNAPC5 (ENSPCTG00005017569)	ENSPCTG00005017611 #23	ZWILCH (ENSPCTG00005017727) #24	LCTL (ENSPCTG00005017782) #25	ENSPCTG00005018004	SMAD6 (ENSPCTG00005018032) #26	ENSPCTG00005018068	SMAD3 (ENSPCTG00005018084) #27	AAGAB (ENSPCTG00005018169) #28	IQCH (ENSPCTG00005018285) #29	C11H15orf61 (ENSPCTG00005018901) #30	MAP2K5 (ENSPCTG00005018992) #32	SKOR1 (ENSPCTG00005019628) #33	ENSPCTG00005019847	ENSPCTG00005019890
Blue whale	MODERN SPECIES	11	CLPX (ENSBMSG00010005401)	CILP (ENSBMSG00010005283) #7	PARP16 (ENSBMSG00010005241) #8	IGDCC3 (ENSBMSG00010005178) #10	IGDCC4 (ENSBMSG00010005162) #11	DPP8 (ENSBMSG00010004802) #12	HACD3 (ENSBMSG00010004707) #13	INTS14 (ENSBMSG00010004651) #14	SLC24A1 (ENSBMSG00010004497) #15	DENND4A (ENSBMSG00010004402) #16	RAB11A (ENSBMSG00010004363) #18	MEGF11 (ENSBMSG00010004218) #19	DIS3L (ENSBMSG00010004171) #20	ENSBMSG00010004151 #21	ENSBMSG00010004137	MAP2K1 (ENSBMSG00010004109) #22	ENSBMSG00010004081	ENSBMSG00010004041 #23	ZWILCH (ENSBMSG00010004025) #24	LCTL (ENSBMSG00010003979) #25	SMAD6 (ENSBMSG00010003960) #26	SMAD3 (ENSBMSG00010003929) #27	AAGAB (ENSBMSG00010003912) #28	IQCH (ENSBMSG00010003720) #29	C15orf61 (ENSBMSG00010003681) #30	MAP2K5 (ENSBMSG00010003598) #32	SKOR1 (ENSBMSG00010003555) #33	PIAS1 (ENSBMSG00010003520) #34	CALML4 (ENSBMSG00010003507) #35	CLN6 (ENSBMSG00010003453) #36	FEM1B (ENSBMSG00010003441) #37
Pecora	ANCESTRAL SPECIES	6	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145.xc #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00910000147890	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36
Yarkand deer	MODERN SPECIES	3	CLPX (ENSCHYG00000007103)	CILP (ENSCHYG00000007285) #7	ENSCHYG00000007376 #8	IGDCC3 (ENSCHYG00000007443) #10	IGDCC4 (ENSCHYG00000007622) #11	DPP8 (ENSCHYG00000007762) #12	HACD3 (ENSCHYG00000008236) #13	INTS14 (ENSCHYG00000008447) #14	SLC24A1 (ENSCHYG00000008613) #15	DENND4A (ENSCHYG00000008838) #16	ENSCHYG00000009117	ENSCHYG00000009145 #18	MEGF11 (ENSCHYG00000009296) #19	DIS3L (ENSCHYG00000010099) #20	TIPIN (ENSCHYG00000010297) #21	MAP2K1 (ENSCHYG00000010364) #22	ENSCHYG00000010432	SNAPC5 (ENSCHYG00000010450)	ENSCHYG00000010506 #23	ZWILCH (ENSCHYG00000010774) #24	LCTL (ENSCHYG00000011283) #25	ENSCHYG00000011323	SMAD6 (ENSCHYG00000011380) #26	SMAD3 (ENSCHYG00000011473) #27	AAGAB (ENSCHYG00000011610) #28	IQCH (ENSCHYG00000011825) #29	C15orf61 (ENSCHYG00000012160) #30	MAP2K5 (ENSCHYG00000012261) #32	SKOR1 (ENSCHYG00000013681) #33	PIAS1 (ENSCHYG00000013992) #34	CALML4 (ENSCHYG00000014198) #35
Percora_a	ANCESTRAL SPECIES	8	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145.xc #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00910000147890	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36
Siberian musk deer	MODERN SPECIES	70	CILP (ENSMMSG00000019540) #7	PARP16 (ENSMMSG00000019586) #8	IGDCC3 (ENSMMSG00000000099) #10	IGDCC4 (ENSMMSG00000000147) #11	DPP8 (ENSMMSG00000000258) #12	ENSMMSG00000000445	HACD3 (ENSMMSG00000000485) #13	INTS14 (ENSMMSG00000000581) #14	SLC24A1 (ENSMMSG00000000735) #15	ENSMMSG00000000783	DENND4A (ENSMMSG00000000845) #16	ENSMMSG00000000971 #18	MEGF11 (ENSMMSG00000001023) #19	DIS3L (ENSMMSG00000001148) #20	TIPIN (ENSMMSG00000001178) #21	MAP2K1 (ENSMMSG00000001210) #22	SNAPC5 (ENSMMSG00000001249)	ENSMMSG00000001277 #23	ZWILCH (ENSMMSG00000001358) #24	LCTL (ENSMMSG00000001442) #25	SMAD6 (ENSMMSG00000001473) #26	SMAD3 (ENSMMSG00000001493) #27	AAGAB (ENSMMSG00000001517) #28	IQCH (ENSMMSG00000001575) #29	C15orf61 (ENSMMSG00000001796) #30	MAP2K5 (ENSMMSG00000001850) #32	SKOR1 (ENSMMSG00000002112) #33	PIAS1 (ENSMMSG00000002174) #34	CALML4 (ENSMMSG00000002206) #35	CLN6 (ENSMMSG00000002230) #36	FEM1B (ENSMMSG00000002327) #37
Bovidae	ANCESTRAL SPECIES	7	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145.xc #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00910000147890	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36
Bovinae	ANCESTRAL SPECIES	33	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914.ib #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145.xc #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00910000147890	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36
Bos	ANCESTRAL SPECIES	31	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914.ib #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145.xc.e.a #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00910000147890	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36
Bos_a	ANCESTRAL SPECIES	40													ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145.xc.e.a #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00960000188521	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36
Domestic yak	MODERN SPECIES	2	CLPX (ENSBGRG00000025615)	CILP (ENSBGRG00000025584) #7	PARP16 (ENSBGRG00000025545) #8	IGDCC3 (ENSBGRG00000025511) #10	IGDCC4 (ENSBGRG00000025454) #11	DPP8 (ENSBGRG00000025360) #12	HACD3 (ENSBGRG00000025307) #13	INTS14 (ENSBGRG00000025180) #14	SLC24A1 (ENSBGRG00000025095) #15	ENSBGRG00000025078	DENND4A (ENSBGRG00000024953) #16	ENSBGRG00000024884 #18	MEGF11 (ENSBGRG00000024819) #19	DIS3L (ENSBGRG00000024760) #20	TIPIN (ENSBGRG00000024730) #21	MAP2K1 (ENSBGRG00000024678) #22	SNAPC5 (ENSBGRG00000024649)	ENSBGRG00000024489 #23	ZWILCH (ENSBGRG00000024356) #24	LCTL (ENSBGRG00000024229) #25	SMAD6 (ENSBGRG00000024050) #26	SMAD3 (ENSBGRG00000023965) #27	AAGAB (ENSBGRG00000023783) #28	IQCH (ENSBGRG00000023490) #29	ENSBGRG00000023451 #30	ENSBGRG00000023428	MAP2K5 (ENSBGRG00000023013) #32	SKOR1 (ENSBGRG00000022855) #33	PIAS1 (ENSBGRG00000022493) #34	CALML4 (ENSBGRG00000022400) #35	CLN6 (ENSBGRG00000022143) #36
Wild yak	MODERN SPECIES	552														DIS3L (ENSBMUG00000005883) #20	TIPIN (ENSBMUG00000005904) #21	MAP2K1 (ENSBMUG00000005924) #22	SNAPC5 (ENSBMUG00000005936)	ENSBMUG00000005950 #23	ZWILCH (ENSBMUG00000006013) #24	LCTL (ENSBMUG00000006040) #25	ENSBMUG00000006090 #26	SMAD3 (ENSBMUG00000006115) #27	AAGAB (ENSBMUG00000006202) #28	IQCH (ENSBMUG00000006265) #29	ENSBMUG00000006346	MAP2K5 (ENSBMUG00000006406) #32	SKOR1 (ENSBMUG00000006456) #33	PIAS1 (ENSBMUG00000006486) #34	CALML4 (ENSBMUG00000006499) #35	CLN6 (ENSBMUG00000006571) #36	FEM1B (ENSBMUG00000006589) #37
Bos_b	ANCESTRAL SPECIES	28	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914.ib #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145.xc.e.a #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00910000147890	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36
Hybrid Bos Indicus	DUPLICATION
Hybrid Bos Indicus	MODERN SPECIES	1	PDCD7 (ENSBIXG00005008169)	CILP (ENSBIXG00005008107) #7	PARP16 (ENSBIXG00005008021) #8	IGDCC3 (ENSBIXG00005007974) #10	IGDCC4 (ENSBIXG00005007962) #11	DPP8 (ENSBIXG00005007925) #12	DENND4A (ENSBIXG00005007862) #16	HACD3 (ENSBIXG00005029324) #13	INTS14 (ENSBIXG00005029402) #14	SLC24A1 (ENSBIXG00005029443) #15	ENSBIXG00005029457	RAB11A (ENSBIXG00005029469) #18	MEGF11 (ENSBIXG00005029582) #19	DIS3L (ENSBIXG00005029839) #20	TIPIN (ENSBIXG00005029852) #21	ENSBIXG00005029869 #22	SNAPC5 (ENSBIXG00005029881)	ENSBIXG00005029889 #23	ZWILCH (ENSBIXG00005029921) #24	LCTL (ENSBIXG00005029961) #25	SMAD6 (ENSBIXG00005030012) #26	SMAD3 (ENSBIXG00005030065) #27	AAGAB (ENSBIXG00005030085) #28	IQCH (ENSBIXG00005030120) #29	C15orf61 (ENSBIXG00005030179) #30	MAP2K5 (ENSBIXG00005030309) #32	SKOR1 (ENSBIXG00005030471) #33	PIAS1 (ENSBIXG00005030503) #34	CALML4 (ENSBIXG00005030510) #35	ENSBIXG00005030548 #36	FEM1B (ENSBIXG00005030567) #37
Hybrid Bos Indicus	MODERN SPECIES	24	KCNMB4 (ENSBIXG00005028115)	ENSBIXG00005028096	PTPRB (ENSBIXG00005027925)	PTPRR (ENSBIXG00005004557)	CPNE8 (ENSBIXG00005026517)	ENSBIXG00005026479	ENSBIXG00005026468	KIF21A (ENSBIXG00005004515)	ABCD2 (ENSBIXG00005004493)	SLC2A13 (ENSBIXG00005026266)	LRRK2 (ENSBIXG00005026223)	ENSBIXG00005026174	ENSBIXG00005026161	CNTN1 (ENSBIXG00005026041)	PDZRN4 (ENSBIXG00005025496)	ENSBIXG00005004328 #22	GXYLT1 (ENSBIXG00005025400)	YAF2 (ENSBIXG00005025330)	PPHLN1 (ENSBIXG00005025218)	ENSBIXG00005024942	ENSBIXG00005024912	ENSBIXG00005024904	PRICKLE1 (ENSBIXG00005024889)	ADAMTS20 (ENSBIXG00005004224)	ENSBIXG00005004218	ENSBIXG00005024672	PUS7L (ENSBIXG00005004211)	IRAK4 (ENSBIXG00005004199)	TWF1 (ENSBIXG00005024507)	TMEM117 (ENSBIXG00005024436)	ENSBIXG00005004171
Cow	MODERN SPECIES	1	UBAP1L (ENSBTAG00000051351)	PDCD7 (ENSBTAG00000039658)	CLPX (ENSBTAG00000008386)	PARP16 (ENSBTAG00000012352) #8	IGDCC3 (ENSBTAG00000008828) #10	IGDCC4 (ENSBTAG00000006440) #11	DPP8 (ENSBTAG00000014807) #12	HACD3 (ENSBTAG00000015155) #13	INTS14 (ENSBTAG00000015158) #14	SLC24A1 (ENSBTAG00000025826) #15	DENND4A (ENSBTAG00000017095) #16	RAB11A (ENSBTAG00000018959) #18	MEGF11 (ENSBTAG00000034140) #19	DIS3L (ENSBTAG00000000371) #20	TIPIN (ENSBTAG00000000372) #21	MAP2K1 (ENSBTAG00000033983) #22	SNAPC5 (ENSBTAG00000005210)	RPL4 (ENSBTAG00000005211) #23	ZWILCH (ENSBTAG00000005213) #24	LCTL (ENSBTAG00000005214) #25	ENSBTAG00000050356	SMAD6 (ENSBTAG00000000625) #26	SMAD3 (ENSBTAG00000012599) #27	AAGAB (ENSBTAG00000040368) #28	IQCH (ENSBTAG00000013638) #29	C10H15orf61 (ENSBTAG00000045628) #30	MAP2K5 (ENSBTAG00000000218) #32	PIAS1 (ENSBTAG00000005564) #34	CALML4 (ENSBTAG00000025822) #35	CLN6 (ENSBTAG00000005565) #36	FEM1B (ENSBTAG00000008378) #37
American bison	MODERN SPECIES	2972	PDCD7 (ENSBBBG00000007861)	CLPX (ENSBBBG00000025450)	CILP (ENSBBBG00000025485) #7	PARP16 (ENSBBBG00000009370) #8	IGDCC3 (ENSBBBG00000001479) #10	IGDCC4 (ENSBBBG00000009376) #11	DPP8 (ENSBBBG00000001480) #12	HACD3 (ENSBBBG00000009384) #13	INTS14 (ENSBBBG00000001482) #14	SLC24A1 (ENSBBBG00000009385) #15	DENND4A (ENSBBBG00000009388) #16	ENSBBBG00000001484 #18	MEGF11 (ENSBBBG00000009393) #19	DIS3L (ENSBBBG00000001485) #20	ENSBBBG00000009401	MAP2K1 (ENSBBBG00000009402) #22	SNAPC5 (ENSBBBG00000009405)	RPL4 (ENSBBBG00000009410) #23	ZWILCH (ENSBBBG00000007486) #24	LCTL (ENSBBBG00000009415) #25	SMAD6 (ENSBBBG00000001493) #26	SMAD3 (ENSBBBG00000009419) #27	AAGAB (ENSBBBG00000009422) #28	IQCH (ENSBBBG00000009426) #29	C15orf61 (ENSBBBG00000009428) #30	MAP2K5 (ENSBBBG00000009430) #32	PIAS1 (ENSBBBG00000009435) #34	CALML4 (ENSBBBG00000009437) #35	CLN6 (ENSBBBG00000001505) #36	FEM1B (ENSBBBG00000009440) #37	ITGA11 (ENSBBBG00000009443)
Caprinae	ANCESTRAL SPECIES	30	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764.o #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145.xc #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Rambouillet Sheep	MODERN SPECIES	23	ENSOARG00020005294	CLPX (ENSOARG00020005303)	CILP (ENSOARG00020005386) #7	PARP16 (ENSOARG00020005448) #8	IGDCC3 (ENSOARG00020005562) #10	IGDCC4 (ENSOARG00020005613) #11	DPP8 (ENSOARG00020005690) #12	HACD3 (ENSOARG00020005830) #13	INTS14 (ENSOARG00020006021) #14	SLC24A1 (ENSOARG00020006188) #15	DENND4A (ENSOARG00020006221) #16	ENSOARG00020006812 #18	MEGF11 (ENSOARG00020006928) #19	DIS3L (ENSOARG00020007756) #20	TIPIN (ENSOARG00020007825) #21	MAP2K1 (ENSOARG00020007890) #22	SNAPC5 (ENSOARG00020007973)	RPL4 (ENSOARG00020008040) #23	ZWILCH (ENSOARG00020008203) #24	LCTL (ENSOARG00020008384) #25	SMAD6 (ENSOARG00020008552) #26	SMAD3 (ENSOARG00020008589) #27	ENSOARG00020008703 #28	IQCH (ENSOARG00020008820) #29	C15orf61 (ENSOARG00020009584) #30	MAP2K5 (ENSOARG00020009665) #32	SKOR1 (ENSOARG00020010969) #33	PIAS1 (ENSOARG00020011172) #34	CALML4 (ENSOARG00020011634) #35	CLN6 (ENSOARG00020011715) #36	FEM1B (ENSOARG00020011984) #37
Goat	MODERN SPECIES	1	CILP (ENSCHIG00000012679) #7	PARP16 (ENSCHIG00000011861) #8	IGDCC3 (ENSCHIG00000013215) #10	IGDCC4 (ENSCHIG00000021302) #11	DPP8 (ENSCHIG00000013527) #12	HACD3 (ENSCHIG00000020855) #13	INTS14 (ENSCHIG00000012971) #14	SLC24A1 (ENSCHIG00000023644) #15	ENSCHIG00000015128	DENND4A (ENSCHIG00000024015) #16	ENSCHIG00000012183 #18	ENSCHIG00000006809	MEGF11 (ENSCHIG00000023140) #19	DIS3L (ENSCHIG00000009744) #20	ENSCHIG00000000481 #21	MAP2K1 (ENSCHIG00000021340) #22	SNAPC5 (ENSCHIG00000011315)	RPL4 (ENSCHIG00000012421) #23	ZWILCH (ENSCHIG00000015830) #24	LCTL (ENSCHIG00000017181) #25	SMAD6 (ENSCHIG00000012651) #26	SMAD3 (ENSCHIG00000013774) #27	ENSCHIG00000015028 #28	IQCH (ENSCHIG00000009034) #29	C15orf61 (ENSCHIG00000026630) #30	MAP2K5 (ENSCHIG00000022039) #32	SKOR1 (ENSCHIG00000017580) #33	ENSCHIG00000010951	ENSCHIG00000003884	PIAS1 (ENSCHIG00000014001) #34	CALML4 (ENSCHIG00000005207) #35
Atlantogenata	ANCESTRAL SPECIES	2	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Xenarthra	ANCESTRAL SPECIES	230						ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26
Armadillo	MODERN SPECIES	984						IGDCC4 (ENSDNOG00000015741) #11	DPP8 (ENSDNOG00000001444) #12	HACD3 (ENSDNOG00000001687) #13	INTS14 (ENSDNOG00000001690) #14	SLC24A1 (ENSDNOG00000000816) #15	DENND4A (ENSDNOG00000019872) #16	ENSDNOG00000038479 #18	MEGF11 (ENSDNOG00000016951) #19	DIS3L (ENSDNOG00000016967) #20	TIPIN (ENSDNOG00000003177) #21	MAP2K1 (ENSDNOG00000016563) #22	ENSDNOG00000006689	ENSDNOG00000006693 #23	ZWILCH (ENSDNOG00000006711) #24	LCTL (ENSDNOG00000006740) #25	SMAD6 (ENSDNOG00000008227) #26
Sloth	MODERN SPECIES	5700																MAP2K1 (ENSCHOG00000002997) #22	SNAPC5 (ENSCHOG00000003006)	RPL4 (ENSCHOG00000003008) #23
Afrotheria	ANCESTRAL SPECIES	58	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Afrotheria_a	ANCESTRAL SPECIES	56	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Hyrax	MODERN SPECIES	5249																MAP2K1 (ENSPCAG00000000567) #22	SNAPC5 (ENSPCAG00000000608)	RPL4 (ENSPCAG00000000620) #23	ZWILCH (ENSPCAG00000000663) #24	LCTL (ENSPCAG00000000738) #25
Elephant	MODERN SPECIES	466	KBTBD13 (ENSLAFG00000031048)	PDCD7 (ENSLAFG00000004977)	CLPX (ENSLAFG00000004978)	CILP (ENSLAFG00000005873) #7	PARP16 (ENSLAFG00000014938) #8	IGDCC3 (ENSLAFG00000000244) #10	IGDCC4 (ENSLAFG00000022955) #11	DPP8 (ENSLAFG00000013000) #12	HACD3 (ENSLAFG00000010226) #13	INTS14 (ENSLAFG00000010235) #14	DENND4A (ENSLAFG00000010247) #16	RAB11A (ENSLAFG00000011418) #18	MEGF11 (ENSLAFG00000011424) #19	DIS3L (ENSLAFG00000006866) #20	TIPIN (ENSLAFG00000026016) #21	MAP2K1 (ENSLAFG00000006487) #22	SNAPC5 (ENSLAFG00000006491)	RPL4 (ENSLAFG00000006494) #23	LCTL (ENSLAFG00000012306) #25	SMAD6 (ENSLAFG00000013285) #26	SMAD3 (ENSLAFG00000021903) #27	AAGAB (ENSLAFG00000022590) #28	IQCH (ENSLAFG00000011381) #29	C15orf61 (ENSLAFG00000000737) #30	MAP2K5 (ENSLAFG00000001427) #32	SKOR1 (ENSLAFG00000018189) #33	ENSLAFG00000029244	PIAS1 (ENSLAFG00000018150) #34	CALML4 (ENSLAFG00000021943) #35	CLN6 (ENSLAFG00000029055) #36	FEM1B (ENSLAFG00000013998) #37
Tenrec	MODERN SPECIES	6225																MAP2K1 (ENSETEG00000000333) #22	SNAPC5 (ENSETEG00000000336)	RPL4 (ENSETEG00000000337) #23	ZWILCH (ENSETEG00000000342) #24	LCTL (ENSETEG00000000348) #25
Marsupialia	ANCESTRAL SPECIES		ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Marsupialia_b	ANCESTRAL SPECIES		ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Diprotodontia	ANCESTRAL SPECIES		ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Diprotodontia_a	ANCESTRAL SPECIES	1	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
koala	MODERN SPECIES		UBAP1L (ENSPCIG00000024116)	PDCD7 (ENSPCIG00000024115)	CLPX (ENSPCIG00000024113)	CILP (ENSPCIG00000024111) #7	PARP16 (ENSPCIG00000024110) #8	IGDCC4 (ENSPCIG00000024106) #11	DPP8 (ENSPCIG00000024105) #12	HACD3 (ENSPCIG00000008851) #13	INTS14 (ENSPCIG00000008852) #14	ENSPCIG00000008854 #15	DENND4A (ENSPCIG00000006919) #16	RAB11A (ENSPCIG00000006878) #18	MEGF11 (ENSPCIG00000006843) #19	DIS3L (ENSPCIG00000006827) #20	TIPIN (ENSPCIG00000006818) #21	MAP2K1 (ENSPCIG00000006816) #22	ENSPCIG00000006812	RPL4 (ENSPCIG00000006799) #23	ZWILCH (ENSPCIG00000006798) #24	LCTL (ENSPCIG00000006796) #25	SMAD6 (ENSPCIG00000006792) #26	SMAD3 (ENSPCIG00000014066) #27	AAGAB (ENSPCIG00000014065) #28	IQCH (ENSPCIG00000023221) #29	C15orf61 (ENSPCIG00000023229) #30	MAP2K5 (ENSPCIG00000023233) #32	SKOR1 (ENSPCIG00000023240) #33	PIAS1 (ENSPCIG00000023245) #34	CALML4 (ENSPCIG00000023241) #35	CLN6 (ENSPCIG00000023237) #36	ENSPCIG00000023218
Common wonbat	MODERN SPECIES	581	PDCD7 (ENSVURG00010016727)	CLPX (ENSVURG00010016746)	CILP (ENSVURG00010016754) #7	PARP16 (ENSVURG00010016773) #8	IGDCC3 (ENSVURG00010016786) #10	IGDCC4 (ENSVURG00010016817) #11	DPP8 (ENSVURG00010016847) #12	HACD3 (ENSVURG00010016877) #13	INTS14 (ENSVURG00010016912) #14	ENSVURG00010017031 #15	DENND4A (ENSVURG00010017069) #16	RAB11A (ENSVURG00010017156) #18	MEGF11 (ENSVURG00010017205) #19	DIS3L (ENSVURG00010017304) #20	TIPIN (ENSVURG00010017324) #21	MAP2K1 (ENSVURG00010017352) #22	SNAPC5 (ENSVURG00010017361)	RPL4 (ENSVURG00010017371) #23	ZWILCH (ENSVURG00010017403) #24	LCTL (ENSVURG00010017479) #25	SMAD6 (ENSVURG00010017499) #26	SMAD3 (ENSVURG00010017513) #27	AAGAB (ENSVURG00010017532) #28	IQCH (ENSVURG00010017554) #29	ENSVURG00010017577	C15orf61 (ENSVURG00010017585) #30	MAP2K5 (ENSVURG00010017619) #32	SKOR1 (ENSVURG00010017727) #33	PIAS1 (ENSVURG00010017756) #34	CALML4 (ENSVURG00010017772) #35	CLN6 (ENSVURG00010017776) #36
Wallaby	MODERN SPECIES	7730																MAP2K1 (ENSMEUG00000003989) #22	SNAPC5 (ENSMEUG00000003990)	RPL4 (ENSMEUG00000003992) #23
Tasmanian devil	MODERN SPECIES	1	PDCD7 (ENSSHAG00000021601)	CLPX (ENSSHAG00000021063)	CILP (ENSSHAG00000011619) #7	PARP16 (ENSSHAG00000028933) #8	IGDCC3 (ENSSHAG00000012266) #10	IGDCC4 (ENSSHAG00000012686) #11	DPP8 (ENSSHAG00000012989) #12	HACD3 (ENSSHAG00000013349) #13	INTS14 (ENSSHAG00000013462) #14	SLC24A1 (ENSSHAG00000013623) #15	DENND4A (ENSSHAG00000002367) #16	RAB11A (ENSSHAG00000006622) #18	MEGF11 (ENSSHAG00000006869) #19	DIS3L (ENSSHAG00000010970) #20	TIPIN (ENSSHAG00000011237) #21	MAP2K1 (ENSSHAG00000029460) #22	SNAPC5 (ENSSHAG00000025154)	RPL4 (ENSSHAG00000002421) #23	ZWILCH (ENSSHAG00000002622) #24	LCTL (ENSSHAG00000003461) #25	SMAD6 (ENSSHAG00000007962) #26	SMAD3 (ENSSHAG00000023904) #27	AAGAB (ENSSHAG00000012729) #28	IQCH (ENSSHAG00000012985) #29	C15orf61 (ENSSHAG00000031222) #30	MAP2K5 (ENSSHAG00000014400) #32	SKOR1 (ENSSHAG00000027578) #33	PIAS1 (ENSSHAG00000022295) #34	CALML4 (ENSSHAG00000028912) #35	ENSSHAG00000003272 #36	FEM1B (ENSSHAG00000030104) #37
Opossum	MODERN SPECIES		ENSMODG00000029783	CILP (ENSMODG00000010296) #7	PARP16 (ENSMODG00000041084) #8	IGDCC3 (ENSMODG00000010271) #10	IGDCC4 (ENSMODG00000010244) #11	DPP8 (ENSMODG00000010208) #12	HACD3 (ENSMODG00000009893) #13	INTS14 (ENSMODG00000009876) #14	SLC24A1 (ENSMODG00000009861) #15	DENND4A (ENSMODG00000009838) #16	RAB11A (ENSMODG00000009810) #18	MEGF11 (ENSMODG00000009795) #19	DIS3L (ENSMODG00000009760) #20	TIPIN (ENSMODG00000009724) #21	ENSMODG00000039883	MAP2K1 (ENSMODG00000009715) #22	ENSMODG00000025470	RPL4 (ENSMODG00000009657) #23	ZWILCH (ENSMODG00000009648) #24	LCTL (ENSMODG00000009632) #25	SMAD6 (ENSMODG00000009620) #26	SMAD3 (ENSMODG00000038564) #27	ENSMODG00000009585 #28	ENSMODG00000009566 #29	C15orf61 (ENSMODG00000036723) #30	MAP2K5 (ENSMODG00000009527) #32	SKOR1 (ENSMODG00000024583) #33	PIAS1 (ENSMODG00000009467) #34	CALML4 (ENSMODG00000009430) #35	CLN6 (ENSMODG00000009425) #36	FEM1B (ENSMODG00000051021) #37
Platypus	MODERN SPECIES	16	RASL12 (ENSOANG00000047854)	MTFMT (ENSOANG00000036007)	CILP (ENSOANG00000002696) #7	PARP16 (ENSOANG00000008180) #8	IGDCC3 (ENSOANG00000012253) #10	IGDCC4 (ENSOANG00000011112) #11	DPP8 (ENSOANG00000008346) #12	ENSOANG00000046972 #13	INTS14 (ENSOANG00000001669) #14	ENSOANG00000043682 #15	DENND4A (ENSOANG00000044994) #16	RAB11A (ENSOANG00000038794) #18	MEGF11 (ENSOANG00000037204) #19	DIS3L (ENSOANG00000009753) #20	TIPIN (ENSOANG00000048848) #21	MAP2K1 (ENSOANG00000009750) #22	SNAPC5 (ENSOANG00000039654)	RPL4 (ENSOANG00000048650) #23	ZWILCH (ENSOANG00000004555) #24	LCTL (ENSOANG00000004554) #25	SMAD6 (ENSOANG00000042174) #26	SMAD3 (ENSOANG00000037003) #27	AAGAB (ENSOANG00000046695) #28	ENSOANG00000013556 #29	C15orf61 (ENSOANG00000042403) #30	MAP2K5 (ENSOANG00000013555) #32	SKOR1 (ENSOANG00000041839) #33	PIAS1 (ENSOANG00000013547) #34	CALML4 (ENSOANG00000036767) #35	CLN6 (ENSOANG00000044196) #36	ENSOANG00000013544
Sauria	ANCESTRAL SPECIES	10	ENSGT00390000008152.B.b #7	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #8	ENSGT00950000182960.b	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00950000186456	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36
Lepidosauria	ANCESTRAL SPECIES	19	ENSGT00390000017828	ENSGT00390000008152.B.b #7	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #8	ENSGT00950000182960.b	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00950000186456	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36
tuatara	MODERN SPECIES	842								ENSSPUG00000013730 #16	ENSSPUG00000013724 #16	ENSSPUG00000013716 #16	ENSSPUG00000013706 #16	RAB11A (ENSSPUG00000013698) #18	MEGF11 (ENSSPUG00000013679) #19	DIS3L (ENSSPUG00000013652) #20	TIPIN (ENSSPUG00000013622) #21	MAP2K1 (ENSSPUG00000013607) #22	SNAPC5 (ENSSPUG00000013599)	RPL4 (ENSSPUG00000013570) #23	ENSSPUG00000013505 #24	LCTL (ENSSPUG00000013481) #25	SMAD6 (ENSSPUG00000013465) #26	SMAD3 (ENSSPUG00000013429) #27	AAGAB (ENSSPUG00000013388) #28	C15orf61 (ENSSPUG00000013351) #30	MAP2K5 (ENSSPUG00000013303) #32	PIAS1 (ENSSPUG00000013205) #34	CALML4 (ENSSPUG00000013190) #35	CLN6 (ENSSPUG00000013176) #36	ENSSPUG00000013166	ITGA11 (ENSSPUG00000013143)	CORO2B (ENSSPUG00000013122)
Episquamata	ANCESTRAL SPECIES	9	ENSGT00940000160167	ENSGT00390000017828	ENSGT00390000008152.B.b #7	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00950000186456	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000164138
Laterata	ANCESTRAL SPECIES	16	ENSGT00940000160167	ENSGT00390000017828	ENSGT00390000008152.B.b #7	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000164138	ENSGT00940000155465
Argentine black and white tegu	MODERN SPECIES	46	RASL12 (ENSSMRG00000021600)	MTFMT (ENSSMRG00000021598)	CILP (ENSSMRG00000021597) #7	ENSSMRG00000021596	PARP16 (ENSSMRG00000021595) #8	IGDCC3 (ENSSMRG00000021594) #10	IGDCC4 (ENSSMRG00000021593) #11	DPP8 (ENSSMRG00000021592) #12	HACD3 (ENSSMRG00000021591) #13	INTS14 (ENSSMRG00000021590) #14	DENND4A (ENSSMRG00000021589) #16	RAB11A (ENSSMRG00000021588) #18	MEGF11 (ENSSMRG00000021585) #19	DIS3L (ENSSMRG00000021584) #20	TIPIN (ENSSMRG00000021582) #21	MAP2K1 (ENSSMRG00000021581) #22	SNAPC5 (ENSSMRG00000021580)	RPL4 (ENSSMRG00000021574) #23	ZWILCH (ENSSMRG00000021573) #24	SMAD6 (ENSSMRG00000021572) #26	SMAD3 (ENSSMRG00000021571) #27	AAGAB (ENSSMRG00000021570) #28	IQCH (ENSSMRG00000021569) #29	C15orf61 (ENSSMRG00000021568) #30	MAP2K5 (ENSSMRG00000021567) #32	SKOR1 (ENSSMRG00000021566) #33	PIAS1 (ENSSMRG00000021565) #34	CALML4 (ENSSMRG00000021564) #35	CLN6 (ENSSMRG00000021563) #36	ENSSMRG00000021562	ITGA11 (ENSSMRG00000021561)
Common wall lizard	MODERN SPECIES	5	PARP16 (ENSPMRG00000014048) #8	IGDCC3 (ENSPMRG00000014065) #10	IGDCC4 (ENSPMRG00000014090) #11	DPP8 (ENSPMRG00000014125) #12	ENSPMRG00000014139	ENSPMRG00000014144	HACD3 (ENSPMRG00000014152) #13	INTS14 (ENSPMRG00000014159) #14	DENND4A (ENSPMRG00000014169) #16	RAB11A (ENSPMRG00000014183) #18	MEGF11 (ENSPMRG00000014263) #19	ENSPMRG00000014534	ENSPMRG00000014537	DIS3L (ENSPMRG00000014540) #20	TIPIN (ENSPMRG00000014546) #21	MAP2K1 (ENSPMRG00000014555) #22	SNAPC5 (ENSPMRG00000014563)	RPL4 (ENSPMRG00000014570) #23	ZWILCH (ENSPMRG00000014603) #24	SMAD6 (ENSPMRG00000014612) #26	ENSPMRG00000014621 #27	AAGAB (ENSPMRG00000014629) #28	IQCH (ENSPMRG00000014635) #29	C15orf61 (ENSPMRG00000014653) #30	MAP2K5 (ENSPMRG00000014661) #32	SKOR1 (ENSPMRG00000014676) #33	PIAS1 (ENSPMRG00000014688) #34	CALML4 (ENSPMRG00000014698) #35	CLN6 (ENSPMRG00000014706) #36	ENSPMRG00000014712	ENSPMRG00000014717
Toxicofera	ANCESTRAL SPECIES	40	ENSGT00940000160167	ENSGT00390000017828	ENSGT00390000008152.B.b #7	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00950000186456	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000164138
Elapidae	DUPLICATION
Elapidae	ANCESTRAL SPECIES																	ENSGT00940000153487.b.b.c #22
Elapidae_a	ANCESTRAL SPECIES																	ENSGT00940000153487.b.b.c #22
Blue-lipped sea krait	MODERN SPECIES	6720																ENSLLTG00000009889 #22
Elapidae	ANCESTRAL SPECIES	12	ENSGT00940000159637 #11	ENSGT00940000156291	ENSGT00940000157540.A	ENSGT00940000160523	ENSGT00510000048902.b	ENSGT00940000156682	ENSGT00940000159268.d	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b.d #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00950000186456	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000164138
Elapidae_a	ANCESTRAL SPECIES	37	ENSGT00940000159637 #11	ENSGT00940000156291	ENSGT00940000157540.A	ENSGT00940000160523	ENSGT00940000156682	ENSGT00940000159268.d	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT00940000155836.B.m #16	ENSGT00940000155836.B.n #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b.d #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000164138	ENSGT00940000155465.c	ENSGT00940000158689	ENSGT00950000182907.a.b.b.b
Blue-lipped sea krait	MODERN SPECIES	3174															ENSLLTG00000005527	ENSLLTG00000005532 #22	ENSLLTG00000005538	RPL4 (ENSLLTG00000005545) #23	ZWILCH (ENSLLTG00000005562) #24
Acanthophiinae	ANCESTRAL SPECIES	37	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000156291	ENSGT00940000157540.A	ENSGT00940000160523	ENSGT00940000156682	ENSGT00940000159268.d	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT00940000155836.B.m #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b.d #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000164138	ENSGT00940000155465.c	ENSGT00940000158689	ENSGT00950000182907.a.b.b.b
Eastern brown snake	MODERN SPECIES	43	IGDCC3 (ENSPTXG00000015652) #10	IGDCC4 (ENSPTXG00000015649) #11	MCTP2 (ENSPTXG00000015590)	NR2F2 (ENSPTXG00000015588)	ARRDC4 (ENSPTXG00000015586)	IGF1R (ENSPTXG00000015585)	SYNM (ENSPTXG00000015583)	DPP8 (ENSPTXG00000015569) #12	HACD3 (ENSPTXG00000015568) #13	INTS14 (ENSPTXG00000015567) #14	DENND4A (ENSPTXG00000015565) #16	RAB11A (ENSPTXG00000015564) #18	MEGF11 (ENSPTXG00000015560) #19	DIS3L (ENSPTXG00000015557) #20	TIPIN (ENSPTXG00000015555) #21	MAP2K1 (ENSPTXG00000015554) #22	SNAPC5 (ENSPTXG00000015552)	RPL4 (ENSPTXG00000015545) #23	SMAD6 (ENSPTXG00000015543) #26	SMAD3 (ENSPTXG00000015540) #27	AAGAB (ENSPTXG00000015539) #28	IQCH (ENSPTXG00000015536) #29	C15orf61 (ENSPTXG00000015534) #30	MAP2K5 (ENSPTXG00000015531) #32	ENSPTXG00000015529	PIAS1 (ENSPTXG00000015528) #34	CALML4 (ENSPTXG00000015527) #35	CLN6 (ENSPTXG00000015526) #36	ENSPTXG00000015525	ITGA11 (ENSPTXG00000015524)	CORO2B (ENSPTXG00000015523)
Mainland tiger snake	MODERN SPECIES	49	IGDCC3 (ENSNSUG00000002912) #10	IGDCC4 (ENSNSUG00000002913) #11	MCTP2 (ENSNSUG00000002916)	NR2F2 (ENSNSUG00000002923)	ARRDC4 (ENSNSUG00000002927)	IGF1R (ENSNSUG00000002935)	SYNM (ENSNSUG00000002939)	DPP8 (ENSNSUG00000002945) #12	HACD3 (ENSNSUG00000003778) #13	INTS14 (ENSNSUG00000003780) #14	ENSNSUG00000003906 #16	RAB11A (ENSNSUG00000003908) #18	MEGF11 (ENSNSUG00000003910) #19	ENSNSUG00000003922 #20	TIPIN (ENSNSUG00000003924) #21	MAP2K1 (ENSNSUG00000003931) #22	SNAPC5 (ENSNSUG00000003966)	ENSNSUG00000003967 #23	ZWILCH (ENSNSUG00000003975) #24	SMAD3 (ENSNSUG00000003978) #27	AAGAB (ENSNSUG00000003997) #28	C15orf61 (ENSNSUG00000004019) #30	MAP2K5 (ENSNSUG00000004022) #32
Indian cobra	MODERN SPECIES	14	NR2F2 (ENSNNAG00000004668)	ENSNNAG00000004739	ENSNNAG00000004760	ARRDC4 (ENSNNAG00000004766)	ENSNNAG00000004785	IGF1R (ENSNNAG00000004949)	SYNM (ENSNNAG00000007433)	DPP8 (ENSNNAG00000007591) #12	HACD3 (ENSNNAG00000009979) #13	INTS14 (ENSNNAG00000010021) #14	DENND4A (ENSNNAG00000010330) #16	RAB11A (ENSNNAG00000010435) #18	MEGF11 (ENSNNAG00000010468) #19	DIS3L (ENSNNAG00000010799) #20	TIPIN (ENSNNAG00000010924) #21	MAP2K1 (ENSNNAG00000010963) #22	SNAPC5 (ENSNNAG00000011012)	RPL4 (ENSNNAG00000011026) #23	ZWILCH (ENSNNAG00000011099) #24	SMAD6 (ENSNNAG00000011230) #26	SMAD3 (ENSNNAG00000011272) #27	AAGAB (ENSNNAG00000011287) #28	ENSNNAG00000011356	IQCH (ENSNNAG00000011412) #29	C15orf61 (ENSNNAG00000011603) #30	MAP2K5 (ENSNNAG00000011631) #32	SKOR1 (ENSNNAG00000011796) #33	PIAS1 (ENSNNAG00000012101) #34	CLN6 (ENSNNAG00000012206) #36	ENSNNAG00000012296	ITGA11 (ENSNNAG00000012334)
Archelosauria	ANCESTRAL SPECIES	13	ENSGT00390000008152.B.b #7	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #8	ENSGT00950000182960.b.f	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00950000186456	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36
Cryptodira	ANCESTRAL SPECIES	13	ENSGT00390000017828	ENSGT00390000008152.B.b #7	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00950000186456	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36
Testudinoidea	ANCESTRAL SPECIES	6	ENSGT00390000017828	ENSGT00390000008152.B.b #7	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00950000186456	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36
Emydidae	ANCESTRAL SPECIES	21	ENSGT00390000017828	ENSGT00390000008152.B.b #7	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764.b #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
painted turtle	MODERN SPECIES	802	MTFMT (ENSCPBG00000014686)	CILP (ENSCPBG00000014676) #7	ENSCPBG00000014672	PARP16 (ENSCPBG00000014669) #8	IGDCC3 (ENSCPBG00000014663) #10	IGDCC4 (ENSCPBG00000014652) #11	DPP8 (ENSCPBG00000014645) #12	HACD3 (ENSCPBG00000014643) #13	INTS14 (ENSCPBG00000014639) #14	SLC24A1 (ENSCPBG00000014637) #15	DENND4A (ENSCPBG00000014626) #16	RAB11A (ENSCPBG00000014614) #18	MEGF11 (ENSCPBG00000014150) #19	DIS3L (ENSCPBG00000014111) #20	ENSCPBG00000014108 #21	MAP2K1 (ENSCPBG00000014102) #22	SNAPC5 (ENSCPBG00000014100)	RPL4 (ENSCPBG00000014091) #23	ZWILCH (ENSCPBG00000014089) #24	LCTL (ENSCPBG00000014087) #25	NADSYN1 (ENSCPBG00000014079)	DHCR7 (ENSCPBG00000014076)	ZDHHC13 (ENSCPBG00000014073)	CSRP3 (ENSCPBG00000014072)	E2F8 (ENSCPBG00000014068)	NAV2 (ENSCPBG00000014050)	DBX1 (ENSCPBG00000014043)	HTATIP2 (ENSCPBG00000014041)	PRMT3 (ENSCPBG00000014034)	SLC6A5 (ENSCPBG00000014028)	ENSCPBG00000014024
Three-toed box turtle	MODERN SPECIES	27	MTFMT (ENSTMTG00000007020)	CILP (ENSTMTG00000007052) #7	ENSTMTG00000007083	PARP16 (ENSTMTG00000007137) #8	IGDCC3 (ENSTMTG00000007155) #10	IGDCC4 (ENSTMTG00000007233) #11	DPP8 (ENSTMTG00000007513) #12	HACD3 (ENSTMTG00000007567) #13	INTS14 (ENSTMTG00000007590) #14	SLC24A1 (ENSTMTG00000007638) #15	DENND4A (ENSTMTG00000007680) #16	RAB11A (ENSTMTG00000007735) #18	MEGF11 (ENSTMTG00000007756) #19	DIS3L (ENSTMTG00000007906) #20	ENSTMTG00000007940 #21	MAP2K1 (ENSTMTG00000007966) #22	ENSTMTG00000007987	ENSTMTG00000008003 #23	ZWILCH (ENSTMTG00000008057) #24	LCTL (ENSTMTG00000008371) #25	SMAD6 (ENSTMTG00000008403) #26	SMAD3 (ENSTMTG00000008413) #27	AAGAB (ENSTMTG00000008426) #28	IQCH (ENSTMTG00000008467) #29	ENSTMTG00000008700 #30	MAP2K5 (ENSTMTG00000008725) #32	SKOR1 (ENSTMTG00000008807) #33	PIAS1 (ENSTMTG00000008856) #34	CALML4 (ENSTMTG00000008891) #35	CLN6 (ENSTMTG00000008908) #36	FEM1B (ENSTMTG00000008924) #37
Testudinidae	ANCESTRAL SPECIES	3	ENSGT00390000017828	ENSGT00390000008152.B.b #7	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00960000193170	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00950000186456	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36
Goode s thornscrub tortoise	MODERN SPECIES	1	CILP (ENSGEVG00005006481) #7	ENSGEVG00005006396	PARP16 (ENSGEVG00005006356) #8	IGDCC3 (ENSGEVG00005006282) #10	IGDCC4 (ENSGEVG00005006195) #11	DPP8 (ENSGEVG00005006156) #12	HACD3 (ENSGEVG00005006129) #13	INTS14 (ENSGEVG00005006084) #14	SLC24A1 (ENSGEVG00005006015) #15	DENND4A (ENSGEVG00005005910) #16	RAB11A (ENSGEVG00005005859) #18	ENSGEVG00005005833	MEGF11 (ENSGEVG00005005633) #19	DIS3L (ENSGEVG00005005574) #20	TIPIN (ENSGEVG00005005547) #21	MAP2K1 (ENSGEVG00005005509) #22	SNAPC5 (ENSGEVG00005005478)	RPL4 (ENSGEVG00005005421) #23	ZWILCH (ENSGEVG00005005317) #24	LCTL (ENSGEVG00005005207) #25	SMAD6 (ENSGEVG00005005184) #26	SMAD3 (ENSGEVG00005005160) #27	AAGAB (ENSGEVG00005005135) #28	ENSGEVG00005005107	IQCH (ENSGEVG00005005068) #29	C15orf61 (ENSGEVG00005005051) #30	MAP2K5 (ENSGEVG00005004903) #32	SKOR1 (ENSGEVG00005004798) #33	PIAS1 (ENSGEVG00005004663) #34	CALML4 (ENSGEVG00005004576) #35	CLN6 (ENSGEVG00005004545) #36
Abingdon island giant tortoise	MODERN SPECIES	2548	CILP (ENSCABG00000013652) #7	ENSCABG00000013655	PARP16 (ENSCABG00000013665) #8	IGDCC3 (ENSCABG00000013669) #10	IGDCC4 (ENSCABG00000013673) #11	DPP8 (ENSCABG00000013708) #12	HACD3 (ENSCABG00000015923) #13	INTS14 (ENSCABG00000015930) #14	SLC24A1 (ENSCABG00000015939) #15	DENND4A (ENSCABG00000015963) #16	RAB11A (ENSCABG00000016119) #18	MEGF11 (ENSCABG00000016122) #19	ENSCABG00000016124	DIS3L (ENSCABG00000016126) #20	TIPIN (ENSCABG00000016127) #21	MAP2K1 (ENSCABG00000016130) #22	SNAPC5 (ENSCABG00000016133)	RPL4 (ENSCABG00000016134) #23	ZWILCH (ENSCABG00000016148) #24	LCTL (ENSCABG00000016203) #25	SMAD6 (ENSCABG00000016207) #26
Chinese turtle	MODERN SPECIES	1534	ENSPSIG00000013222	PARP16 (ENSPSIG00000013215) #8	IGDCC3 (ENSPSIG00000013033) #10	IGDCC4 (ENSPSIG00000012679) #11	ENSPSIG00000000654	DPP8 (ENSPSIG00000012529) #12	HACD3 (ENSPSIG00000012431) #13	INTS14 (ENSPSIG00000012238) #14	SLC24A1 (ENSPSIG00000012130) #15	DENND4A (ENSPSIG00000011965) #16	RAB11A (ENSPSIG00000011930) #18	ENSPSIG00000011794 #19	ENSPSIG00000011768 #19	DIS3L (ENSPSIG00000011629) #20	TIPIN (ENSPSIG00000011616) #21	MAP2K1 (ENSPSIG00000011457) #22	RPL4 (ENSPSIG00000011400) #23	ZWILCH (ENSPSIG00000011386) #24	LCTL (ENSPSIG00000011332) #25
Archosauria	ANCESTRAL SPECIES	9	ENSGT00390000008152.B.b #7	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #8	ENSGT00950000182960.b.f	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Aves	ANCESTRAL SPECIES	14	ENSGT00390000017828	ENSGT00390000008152.B.b #7	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
African ostrich	MODERN SPECIES	336																MAP2K1 (ENSSCUG00000002980) #22	ENSSCUG00000002979	RPL4 (ENSSCUG00000002974) #23	ZWILCH (ENSSCUG00000002970) #24	SMAD3 (ENSSCUG00000002964) #27	ENSSCUG00000002962 #28	IQCH (ENSSCUG00000002961) #29	ENSSCUG00000002960	ENSSCUG00000002959	MAP2K5 (ENSSCUG00000002958) #32	PIAS1 (ENSSCUG00000002957) #34	CALML4 (ENSSCUG00000002956) #35	CLN6 (ENSSCUG00000002955) #36	ENSSCUG00000002954	ITGA11 (ENSSCUG00000002951)	ENSSCUG00000002948
Neognathae	ANCESTRAL SPECIES	11	ENSGT00390000017828	ENSGT00390000008152.B.b #7	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Neognathae_b	ANCESTRAL SPECIES	13	ENSGT00390000017828	ENSGT00390000008152.B.b #7	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Passeriformes	ANCESTRAL SPECIES	12	ENSGT00390000017828	ENSGT00390000008152.B.b #7	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Great tit	MODERN SPECIES	1	MTFMT (ENSPMJG00000009817)	CILP (ENSPMJG00000009819) #7	ENSPMJG00000009825	PARP16 (ENSPMJG00000009828) #8	IGDCC3 (ENSPMJG00000009863) #10	IGDCC4 (ENSPMJG00000009904) #11	DPP8 (ENSPMJG00000009912) #12	HACD3 (ENSPMJG00000009915) #13	INTS14 (ENSPMJG00000009916) #14	SLC24A1 (ENSPMJG00000009917) #15	DENND4A (ENSPMJG00000009918) #16	RAB11A (ENSPMJG00000009921) #18	MEGF11 (ENSPMJG00000009924) #19	DIS3L (ENSPMJG00000009931) #20	TIPIN (ENSPMJG00000009939) #21	MAP2K1 (ENSPMJG00000009964) #22	SNAPC5 (ENSPMJG00000009967)	RPL4 (ENSPMJG00000009971) #23	ZWILCH (ENSPMJG00000009977) #24	LCTL (ENSPMJG00000009979) #25	SMAD6 (ENSPMJG00000009983) #26	SMAD3 (ENSPMJG00000009991) #27	AAGAB (ENSPMJG00000009992) #28	IQCH (ENSPMJG00000009995) #29	C15orf61 (ENSPMJG00000009998) #30	MAP2K5 (ENSPMJG00000010012) #32	PIAS1 (ENSPMJG00000010016) #34	ENSPMJG00000010020 #35	FEM1B (ENSPMJG00000010022) #37	ITGA11 (ENSPMJG00000010024)	ENSPMJG00000010045
Passeriformes_d	ANCESTRAL SPECIES	12	ENSGT00390000017828	ENSGT00390000008152.B.b #7	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37	ENSGT00940000155465
Flycatcher	MODERN SPECIES	1	MTFMT (ENSFALG00000010118)	CILP (ENSFALG00000010116) #7	ENSFALG00000010114	PARP16 (ENSFALG00000010108) #8	IGDCC3 (ENSFALG00000010105) #10	IGDCC4 (ENSFALG00000010102) #11	DPP8 (ENSFALG00000010098) #12	HACD3 (ENSFALG00000010085) #13	INTS14 (ENSFALG00000010068) #14	SLC24A1 (ENSFALG00000010063) #15	DENND4A (ENSFALG00000010056) #16	RAB11A (ENSFALG00000010052) #18	MEGF11 (ENSFALG00000010040) #19	DIS3L (ENSFALG00000010033) #20	TIPIN (ENSFALG00000010027) #21	MAP2K1 (ENSFALG00000028438) #22	SNAPC5 (ENSFALG00000025446)	ENSFALG00000028967	ENSFALG00000009988	ENSFALG00000009983	ENSFALG00000009980	ENSFALG00000009958	ENSFALG00000009937	ENSFALG00000009927	ENSFALG00000009916	ENSFALG00000029080	ENSFALG00000009902	ENSFALG00000009896	DUOXA2 (ENSFALG00000023603)	ENSFALG00000009862	SORD (ENSFALG00000009847)
Passeriformes_g	ANCESTRAL SPECIES	13	ENSGT00390000017828	ENSGT00390000008152.B.b #7	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT01060000252718	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240.oc #36	ENSGT00940000164138
Medium ground finch	MODERN SPECIES	69	MTFMT (ENSGFOG00000010047)	CILP (ENSGFOG00000010056) #7	GNRHR (ENSGFOG00000010060)	PARP16 (ENSGFOG00000010067) #8	IGDCC3 (ENSGFOG00000010086) #10	IGDCC4 (ENSGFOG00000010130) #11	DPP8 (ENSGFOG00000010227) #12	HACD3 (ENSGFOG00000010246) #13	INTS14 (ENSGFOG00000010255) #14	SLC24A1 (ENSGFOG00000010269) #15	DENND4A (ENSGFOG00000010346) #16	RAB11A (ENSGFOG00000011557) #18	MEGF11 (ENSGFOG00000011585) #19	DIS3L (ENSGFOG00000011782) #20	TIPIN (ENSGFOG00000011794) #21	MAP2K1 (ENSGFOG00000011801) #22	ENSGFOG00000011806	RPL4 (ENSGFOG00000011811) #23	ZWILCH (ENSGFOG00000011836) #24	LCTL (ENSGFOG00000011846) #25	SMAD6 (ENSGFOG00000011856) #26	SMAD3 (ENSGFOG00000011865) #27	ENSGFOG00000011872 #28	ENSGFOG00000011876 #28	IQCH (ENSGFOG00000011884) #29	ENSGFOG00000011897 #30	MAP2K5 (ENSGFOG00000011911) #32	PIAS1 (ENSGFOG00000011939) #34	CALML4 (ENSGFOG00000011946) #35	CLN6 (ENSGFOG00000011952) #36	ENSGFOG00000011958
Passeroidea	ANCESTRAL SPECIES	12	ENSGT00390000017828	ENSGT00390000008152.B.b #7	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT01060000252718	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00960000188521	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240.nc #36	ENSGT00940000161115 #37
Zebra finch	MODERN SPECIES	1	CILP (ENSTGUG00000009096) #7	GNRHR (ENSTGUG00000020538)	PARP16 (ENSTGUG00000009103) #8	IGDCC3 (ENSTGUG00000009117) #10	IGDCC4 (ENSTGUG00000009136) #11	DPP8 (ENSTGUG00000009145) #12	HACD3 (ENSTGUG00000009174) #13	INTS14 (ENSTGUG00000009182) #14	SLC24A1 (ENSTGUG00000009206) #15	DENND4A (ENSTGUG00000009220) #16	RAB11A (ENSTGUG00000009279) #18	MEGF11 (ENSTGUG00000009293) #19	DIS3L (ENSTGUG00000009315) #20	TIPIN (ENSTGUG00000009358) #21	ENSTGUG00000019914	MAP2K1 (ENSTGUG00000009363) #22	RPL4 (ENSTGUG00000009403) #23	ZWILCH (ENSTGUG00000009439) #24	LCTL (ENSTGUG00000009457) #25	SMAD6 (ENSTGUG00000009467) #26	SMAD3 (ENSTGUG00000009470) #27	AAGAB (ENSTGUG00000009497) #28	IQCH (ENSTGUG00000009504) #29	ENSTGUG00000009527	MAP2K5 (ENSTGUG00000009531) #32	ENSTGUG00000025021 #33	ENSTGUG00000009553 #34	ENSTGUG00000029271 #35	ENSTGUG00000021449 #36	ENSTGUG00000024498 #37	ENSTGUG00000009614
Common canary	MODERN SPECIES	12	MTFMT (ENSSCAG00000010115)	CILP (ENSSCAG00000010128) #7	GNRHR (ENSSCAG00000010133)	PARP16 (ENSSCAG00000010143) #8	IGDCC3 (ENSSCAG00000010169) #10	IGDCC4 (ENSSCAG00000010185) #11	DPP8 (ENSSCAG00000010189) #12	HACD3 (ENSSCAG00000010199) #13	INTS14 (ENSSCAG00000010200) #14	SLC24A1 (ENSSCAG00000010206) #15	DENND4A (ENSSCAG00000010214) #16	RAB11A (ENSSCAG00000010226) #18	MEGF11 (ENSSCAG00000010255) #19	DIS3L (ENSSCAG00000010324) #20	TIPIN (ENSSCAG00000010328) #21	MAP2K1 (ENSSCAG00000010333) #22	ENSSCAG00000010341	RPL4 (ENSSCAG00000010344) #23	ZWILCH (ENSSCAG00000010364) #24	LCTL (ENSSCAG00000010374) #25	ENSSCAG00000010394	ENSSCAG00000010404	SMAD6 (ENSSCAG00000010407) #26	SMAD3 (ENSSCAG00000010414) #27	AAGAB (ENSSCAG00000010418) #28	IQCH (ENSSCAG00000010432) #29	ENSSCAG00000010438	MAP2K5 (ENSSCAG00000010448) #32	PIAS1 (ENSSCAG00000010481) #34	CALML4 (ENSSCAG00000010490) #35	ENSSCAG00000010493 #36
Neognathae_c	ANCESTRAL SPECIES	15	ENSGT00390000017828	ENSGT00390000008152.B.b #7	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Golden eagle	MODERN SPECIES	21	MTFMT (ENSACCG00020008908)	CILP (ENSACCG00020008937) #7	ENSACCG00020008952	PARP16 (ENSACCG00020008969) #8	IGDCC3 (ENSACCG00020009002) #10	IGDCC4 (ENSACCG00020009048) #11	DPP8 (ENSACCG00020009512) #12	HACD3 (ENSACCG00020009900) #13	INTS14 (ENSACCG00020009917) #14	SLC24A1 (ENSACCG00020009936) #15	DENND4A (ENSACCG00020009959) #16	RAB11A (ENSACCG00020009992) #18	MEGF11 (ENSACCG00020010081) #19	DIS3L (ENSACCG00020010156) #20	TIPIN (ENSACCG00020010172) #21	MAP2K1 (ENSACCG00020010187) #22	SNAPC5 (ENSACCG00020010201)	RPL4 (ENSACCG00020000310) #23	ZWILCH (ENSACCG00020000434) #24	LCTL (ENSACCG00020000480) #25	SMAD6 (ENSACCG00020000507) #26	SMAD3 (ENSACCG00020000522) #27	AAGAB (ENSACCG00020000560) #28	C15orf61 (ENSACCG00020000661) #30	MAP2K5 (ENSACCG00020000704) #32	SKOR1 (ENSACCG00020000753) #33	PIAS1 (ENSACCG00020000781) #34	CALML4 (ENSACCG00020000839) #35	CLN6 (ENSACCG00020000865) #36	FEM1B (ENSACCG00020000880) #37	ITGA11 (ENSACCG00020001060)
Kakapo	MODERN SPECIES	1	ENSSHBG00005014956	PARP16 (ENSSHBG00005014952) #8	IGDCC3 (ENSSHBG00005014931) #10	IGDCC4 (ENSSHBG00005014913) #11	ENSSHBG00005014900	DPP8 (ENSSHBG00005009877) #12	HACD3 (ENSSHBG00005009669) #13	INTS14 (ENSSHBG00005009649) #14	SLC24A1 (ENSSHBG00005009620) #15	DENND4A (ENSSHBG00005009346) #16	RAB11A (ENSSHBG00005009201) #18	ENSSHBG00005009181 #19	ENSSHBG00005009158 #19	DIS3L (ENSSHBG00005009084) #20	TIPIN (ENSSHBG00005009068) #21	MAP2K1 (ENSSHBG00005009053) #22	SNAPC5 (ENSSHBG00005009047)	RPL4 (ENSSHBG00005009017) #23	ZWILCH (ENSSHBG00005008951) #24	LCTL (ENSSHBG00005008922) #25	SMAD6 (ENSSHBG00005000779) #26	SMAD3 (ENSSHBG00005000770) #27	AAGAB (ENSSHBG00005000737) #28	IQCH (ENSSHBG00005000728) #29	C15orf61 (ENSSHBG00005000716) #30	MAP2K5 (ENSSHBG00005000699) #32	SKOR1 (ENSSHBG00005011833) #33	PIAS1 (ENSSHBG00005011813) #34	CALML4 (ENSSHBG00005011797) #35	CLN6 (ENSSHBG00005011786) #36	FEM1B (ENSSHBG00005011772) #37
Galloanserae	ANCESTRAL SPECIES	10	ENSGT00390000017828	ENSGT00390000008152.B.b #7	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Anatidae	ANCESTRAL SPECIES	36	ENSGT00390000017828	ENSGT00390000008152.B.b #7	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37	ENSGT00940000155465
Duck	MODERN SPECIES	2	ENSAPLG00000022299	MTFMT (ENSAPLG00000015719)	CILP (ENSAPLG00000026330) #7	GNRHR (ENSAPLG00000024770)	IGDCC3 (ENSAPLG00000016111) #10	IGDCC4 (ENSAPLG00000013127) #11	DPP8 (ENSAPLG00000013345) #12	HACD3 (ENSAPLG00000013863) #13	INTS14 (ENSAPLG00000014064) #14	SLC24A1 (ENSAPLG00000014168) #15	DENND4A (ENSAPLG00000014243) #16	RAB11A (ENSAPLG00000014962) #18	MEGF11 (ENSAPLG00000015095) #19	DIS3L (ENSAPLG00000015294) #20	TIPIN (ENSAPLG00000015332) #21	MAP2K1 (ENSAPLG00000015480) #22	SNAPC5 (ENSAPLG00000001863)	RPL4 (ENSAPLG00000015853) #23	ZWILCH (ENSAPLG00000000968) #24	ENSAPLG00000028241 #25	SMAD6 (ENSAPLG00000000997) #26	SMAD3 (ENSAPLG00000007006) #27	AAGAB (ENSAPLG00000007346) #28	IQCH (ENSAPLG00000007592) #29	C15orf61 (ENSAPLG00000001076) #30	MAP2K5 (ENSAPLG00000007755) #32	ENSAPLG00000002495 #34	CALML4 (ENSAPLG00000003092) #35	CLN6 (ENSAPLG00000003181) #36	FEM1B (ENSAPLG00000003592) #37	ITGA11 (ENSAPLG00000003663)
Pink-footed goose	MODERN SPECIES	52	GNRHR (ENSABRG00000009256)	PARP16 (ENSABRG00000009242) #8	IGDCC3 (ENSABRG00000009234) #10	IGDCC4 (ENSABRG00000009006) #11	DPP8 (ENSABRG00000008939) #12	ENSABRG00000008924	HACD3 (ENSABRG00000008901) #13	INTS14 (ENSABRG00000008861) #14	SLC24A1 (ENSABRG00000008827) #15	DENND4A (ENSABRG00000008768) #16	RAB11A (ENSABRG00000008748) #18	MEGF11 (ENSABRG00000008723) #19	DIS3L (ENSABRG00000008682) #20	TIPIN (ENSABRG00000008669) #21	ENSABRG00000008668	MAP2K1 (ENSABRG00000008635) #22	SNAPC5 (ENSABRG00000008617)	RPL4 (ENSABRG00000008586) #23	ZWILCH (ENSABRG00000008567) #24	LCTL (ENSABRG00000008534) #25	SMAD6 (ENSABRG00000008516) #26	SMAD3 (ENSABRG00000008486) #27	AAGAB (ENSABRG00000008468) #28	IQCH (ENSABRG00000008459) #29	C15orf61 (ENSABRG00000008455) #30	MAP2K5 (ENSABRG00000008420) #32	PIAS1 (ENSABRG00000008359) #34	CALML4 (ENSABRG00000008336) #35	CLN6 (ENSABRG00000008307) #36	ENSABRG00000008298	ITGA11 (ENSABRG00000007970)
Phasianidae	ANCESTRAL SPECIES	11	ENSGT00390000017828	ENSGT00390000008152.B.b #7	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37	ENSGT00940000155465
Phasianidae_b	ANCESTRAL SPECIES	11	ENSGT00390000017828	ENSGT00390000008152.B.b #7	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37	ENSGT00940000155465
Turkey	MODERN SPECIES	3	MTFMT (ENSMGAG00000009584)	CILP (ENSMGAG00000009589) #7	ENSMGAG00000009590	PARP16 (ENSMGAG00000009579) #8	IGDCC3 (ENSMGAG00000009604) #10	IGDCC4 (ENSMGAG00000009630) #11	DPP8 (ENSMGAG00000009649) #12	HACD3 (ENSMGAG00000009683) #13	INTS14 (ENSMGAG00000009693) #14	SLC24A1 (ENSMGAG00000009715) #15	DENND4A (ENSMGAG00000009728) #16	RAB11A (ENSMGAG00000009797) #18	MEGF11 (ENSMGAG00000009776) #19	DIS3L (ENSMGAG00000009805) #20	TIPIN (ENSMGAG00000009857) #21	MAP2K1 (ENSMGAG00000009864) #22	ENSMGAG00000019153	RPL4 (ENSMGAG00000009822) #23	ZWILCH (ENSMGAG00000009851) #24	SMAD6 (ENSMGAG00000009875) #26	SMAD3 (ENSMGAG00000009879) #27	AAGAB (ENSMGAG00000009906) #28	IQCH (ENSMGAG00000009928) #29	C15orf61 (ENSMGAG00000022676) #30	MAP2K5 (ENSMGAG00000009937) #32	PIAS1 (ENSMGAG00000009994) #34	CALML4 (ENSMGAG00000010048) #35	CLN6 (ENSMGAG00000010054) #36	ENSMGAG00000010069	ITGA11 (ENSMGAG00000010073)	CORO2B (ENSMGAG00000010149)
Chicken	MODERN SPECIES	1	MTFMT (ENSGALG00010017693)	CILP (ENSGALG00010017715) #7	GNRHR (ENSGALG00010017753)	PARP16 (ENSGALG00010017761) #8	IGDCC3 (ENSGALG00010017764) #10	IGDCC4 (ENSGALG00010017782) #11	DPP8 (ENSGALG00010017805) #12	HACD3 (ENSGALG00010017811) #13	VWA9 (ENSGALG00010017815) #14	SLC24A1 (ENSGALG00010017819) #15	DENND4A (ENSGALG00010017830) #16	RAB11A (ENSGALG00010017870) #18	MEGF11 (ENSGALG00010017904) #19	DIS3L (ENSGALG00010017941) #20	TIPIN (ENSGALG00010017956) #21	MAP2K1 (ENSGALG00010018000) #22	SNAPC5 (ENSGALG00010018020)	RPL4 (ENSGALG00010018036) #23	ZWILCH (ENSGALG00010018042) #24	SMAD6 (ENSGALG00010018054) #26	SMAD3 (ENSGALG00010018099) #27	AAGAB (ENSGALG00010018150) #28	IQCH (ENSGALG00010018192) #29	C15orf61 (ENSGALG00010016968) #30	MAP2K5 (ENSGALG00010017039) #32	SKOR1 (ENSGALG00010017146) #33	PIAS1 (ENSGALG00010017264) #34	CALML4 (ENSGALG00010017314) #35	CLN6 (ENSGALG00010017327) #36	FEM1B (ENSGALG00010017354) #37	ENSGALG00010017382
Japanese quail	MODERN SPECIES	1	MTFMT (ENSCJPG00005020757)	CILP (ENSCJPG00005020758) #7	ENSCJPG00005020760	PARP16 (ENSCJPG00005020761) #8	IGDCC3 (ENSCJPG00005020762) #10	IGDCC4 (ENSCJPG00005020763) #11	DPP8 (ENSCJPG00005020764) #12	HACD3 (ENSCJPG00005020802) #13	INTS14 (ENSCJPG00005020803) #14	SLC24A1 (ENSCJPG00005020804) #15	DENND4A (ENSCJPG00005020807) #16	RAB11A (ENSCJPG00005020908) #18	MEGF11 (ENSCJPG00005020910) #19	DIS3L (ENSCJPG00005020941) #20	TIPIN (ENSCJPG00005020942) #21	MAP2K1 (ENSCJPG00005020944) #22	SNAPC5 (ENSCJPG00005020958)	RPL4 (ENSCJPG00005020961) #23	ZWILCH (ENSCJPG00005020968) #24	SMAD6 (ENSCJPG00005020969) #26	SMAD3 (ENSCJPG00005020970) #27	AAGAB (ENSCJPG00005020971) #28	IQCH (ENSCJPG00005020972) #29	C15orf61 (ENSCJPG00005020973) #30	MAP2K5 (ENSCJPG00005020975) #32	SKOR1 (ENSCJPG00005020991) #33	PIAS1 (ENSCJPG00005020993) #34	CALML4 (ENSCJPG00005020995) #35	CLN6 (ENSCJPG00005020996) #36	FEM1B (ENSCJPG00005020997) #37	ITGA11 (ENSCJPG00005020998)
Australian saltwater crocodile	MODERN SPECIES	31	GNRHR (ENSCPRG00005000240)	PARP16 (ENSCPRG00005000279) #8	ENSCPRG00005000326	IGDCC3 (ENSCPRG00005000353) #10	IGDCC4 (ENSCPRG00005000364) #11	DPP8 (ENSCPRG00005000410) #12	HACD3 (ENSCPRG00005000454) #13	INTS14 (ENSCPRG00005000472) #14	ENSCPRG00005000476 #15	ENSCPRG00005000484 #15	DENND4A (ENSCPRG00005000499) #16	RAB11A (ENSCPRG00005000532) #18	MEGF11 (ENSCPRG00005000552) #19	DIS3L (ENSCPRG00005000594) #20	TIPIN (ENSCPRG00005000607) #21	MAP2K1 (ENSCPRG00005000623) #22	SNAPC5 (ENSCPRG00005000626)	RPL4 (ENSCPRG00005000630) #23	ZWILCH (ENSCPRG00005000651) #24	LCTL (ENSCPRG00005000669) #25	SMAD6 (ENSCPRG00005000698) #26	SMAD3 (ENSCPRG00005000730) #27	AAGAB (ENSCPRG00005000756) #28	IQCH (ENSCPRG00005000770) #29	C15orf61 (ENSCPRG00005000791) #30	MAP2K5 (ENSCPRG00005000813) #32	PIAS1 (ENSCPRG00005000826) #34	CALML4 (ENSCPRG00005000835) #35	CLN6 (ENSCPRG00005000877) #36	ENSCPRG00005000881	ITGA11 (ENSCPRG00005000885)
Anura	ANCESTRAL SPECIES		ENSGT00390000018225.A	ENSGT00390000008152.B.b #7	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000158146 #26	ENSGT00940000153499.b.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000161115 #37
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	6	ENSLLEG00000007619	ENSLLEG00000007629	PARP16 (ENSLLEG00000007698) #8	IGDCC3 (ENSLLEG00000007896) #10	IGDCC4 (ENSLLEG00000005550) #11	DPP8 (ENSLLEG00000005938) #12	HACD3 (ENSLLEG00000006102) #13	INTS14 (ENSLLEG00000006176) #14	SLC24A1 (ENSLLEG00000006354) #15	DENND4A (ENSLLEG00000006505) #16	RAB11A (ENSLLEG00000007065) #18	MEGF11 (ENSLLEG00000007218) #19	ENSLLEG00000007739	DIS3L (ENSLLEG00000007758) #20	TIPIN (ENSLLEG00000007891) #21	ENSLLEG00000007941 #22	SNAPC5 (ENSLLEG00000008005)	ENSLLEG00000008024	ENSLLEG00000008052 #23	ZWILCH (ENSLLEG00000008260) #24	LCTL (ENSLLEG00000008419) #25	ENSLLEG00000009059	SMAD6 (ENSLLEG00000009090) #26	SMAD3 (ENSLLEG00000009194) #27	AAGAB (ENSLLEG00000009905) #28	IQCH (ENSLLEG00000009988) #29	C15orf61 (ENSLLEG00000010164) #30	MAP2K5 (ENSLLEG00000010224) #32	SKOR1 (ENSLLEG00000010653) #33	ENSLLEG00000010729	PIAS1 (ENSLLEG00000010874) #34
Leishan spiny toad	MODERN SPECIES	4	ENSLLEG00000029003	ENSLLEG00000029015	ENSLLEG00000029032	LRFN5 (ENSLLEG00000029048)	ENSLLEG00000029096	GPHN (ENSLLEG00000029185)	ENSLLEG00000029665	ENSLLEG00000029674	ENSLLEG00000029687	ENSLLEG00000029702	ENSLLEG00000029718	ENSLLEG00000029728	ATP6V1D (ENSLLEG00000029740)	EIF2S1 (ENSLLEG00000029764)	ENSLLEG00000029819	ENSLLEG00000029899 #22	ENSLLEG00000029948	ENSLLEG00000029965	ARG2 (ENSLLEG00000029978)	FUT8 (ENSLLEG00000030012)	ENSLLEG00000030071	NDUFAF1 (ENSLLEG00000030108)	NUSAP1 (ENSLLEG00000030126)	ENSLLEG00000030172	CHP1 (ENSLLEG00000030213)	ENSLLEG00000030258	ENSLLEG00000030276	INO80 (ENSLLEG00000030322)	ENSLLEG00000030402	CHAC1 (ENSLLEG00000030408)	ENSLLEG00000030415
Frog	MODERN SPECIES	3	XB5959486 [provisional] (ENSXETG00000006651)	cilp (ENSXETG00000006650) #7	gnrhr2/nmi (ENSXETG00000038283)	parp16 (ENSXETG00000006648) #8	igdcc3 (ENSXETG00000033022) #10	igdcc4 (ENSXETG00000006647)	dpp8 (ENSXETG00000006646) #12	hacd3 (ENSXETG00000030041) #13	ints14 (ENSXETG00000006644) #14	slc24a1 (ENSXETG00000033301) #15	dennd4a (ENSXETG00000006641) #16	rab11a (ENSXETG00000006639) #18	megf11 (ENSXETG00000015852) #19	dis3l (ENSXETG00000015865) #20	tipin (ENSXETG00000024752) #21	map2k1 (ENSXETG00000015887) #22	snapc5 (ENSXETG00000015893)	rpl4 (ENSXETG00000015898) #23	zwilch (ENSXETG00000015894) #24	lctl (ENSXETG00000015904) #25	smad6 (ENSXETG00000015939) #26	smad3 (ENSXETG00000007804) #27	aagab (ENSXETG00000007805) #28	pnlip (ENSXETG00000007807) #29	c15orf61 (ENSXETG00000030493) #30	map2k5 (ENSXETG00000007809) #32	ENSXETG00000044421	skor1 (ENSXETG00000007811) #33	pias1 (ENSXETG00000007813) #34	calml4 (ENSXETG00000007814) #35	cln6 (ENSXETG00000029932) #36
Coelacanth	MODERN SPECIES	280	si:ch73-314g15.3 (ENSLACG00000016787)	CILP (ENSLACG00000016729) #7	gnrhr1 (ENSLACG00000016584)	ENSLACG00000016540	PARP16 (ENSLACG00000016410) #8	IGDCC3 (ENSLACG00000015818) #10	IGDCC4 (ENSLACG00000014876) #11	DPP8 (ENSLACG00000014154) #12	HACD3 (ENSLACG00000013954) #13	INTS14 (ENSLACG00000013825) #14	DENND4A (ENSLACG00000012485) #16	RAB11A (ENSLACG00000012184) #18	MEGF11 (ENSLACG00000010981) #19	DIS3L (ENSLACG00000007995) #20	TIPIN (ENSLACG00000007807) #21	MAP2K1 (ENSLACG00000006464) #22	RPL4 (ENSLACG00000006259) #23	ZWILCH (ENSLACG00000005435) #24	LCTL (ENSLACG00000005143) #25	crybgx (ENSLACG00000004693)	SNAPC5 (ENSLACG00000004572)
Actinopterygii	ANCESTRAL SPECIES	92			ENSGT00390000008152.B.b #7	ENSGT00950000183129.a #8	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000153499.b.b.d #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000164138	ENSGT00940000155465	ENSGT00940000158689
Reedfish	MODERN SPECIES	8	ubl7a (ENSECRG00000022069)	CHRNA3 (ENSECRG00000022109)	cilp (ENSECRG00000022196) #7	parp16 (ENSECRG00000022209) #8	IGDCC3 (ENSECRG00000022218) #10	IGDCC4 (ENSECRG00000022233) #11	hacd3 (ENSECRG00000022248) #13	ints14 (ENSECRG00000016954) #14	SLC24A1 (ENSECRG00000016985) #15	dennd4a (ENSECRG00000017079) #16	ENSECRG00000017309	ENSECRG00000017340	ENSECRG00000017450 #19	dis3l (ENSECRG00000017497) #20	tipin (ENSECRG00000017552) #21	map2k1 (ENSECRG00000017617) #22	rpl4 (ENSECRG00000017761) #23	zwilch (ENSECRG00000017849) #24	lctla (ENSECRG00000017984) #25	crybgx (ENSECRG00000018775)	snapc5 (ENSECRG00000018817)	smad6a (ENSECRG00000018835) #26	smad3b (ENSECRG00000018886) #27	aagab (ENSECRG00000019047) #28	iqch (ENSECRG00000019116) #29	zgc:162898 (ENSECRG00000019374) #30	map2k5 (ENSECRG00000019409) #32	ENSECRG00000019494 #33	ENSECRG00000019525 #34	PIAS1 (ENSECRG00000019551) #34	calml4a (ENSECRG00000019589) #35
Neopterygii	ANCESTRAL SPECIES	85	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f #15	ENSGT01030000234532.B.e.b.e #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244	ENSGT00940000155333.B #19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000153499.b.b.d #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00940000157859 #35	ENSGT00400000022240 #36	ENSGT00940000164138	ENSGT00940000155465	ENSGT00940000158689
Spotted gar	MODERN SPECIES	669	ENSLOCG00000013767	eif3ja (ENSLOCG00000013769)	cilp (ENSLOCG00000013772) #7	ENSLOCG00000013774	parp16 (ENSLOCG00000013778) #8	IGDCC3 (ENSLOCG00000013782) #10	IGDCC4 (ENSLOCG00000013791) #11	hacd3 (ENSLOCG00000013803) #13	ints14 (ENSLOCG00000013812) #14	SLC24A1 (ENSLOCG00000013820) #15	dennd4a (ENSLOCG00000013827) #16	rab11a (ENSLOCG00000013835) #18	ENSLOCG00000013837 #19	dis3l (ENSLOCG00000013846) #20	tipin (ENSLOCG00000013854) #21	map2k1 (ENSLOCG00000013858) #22	rpl4 (ENSLOCG00000013867) #23	zwilch (ENSLOCG00000013873) #24	lctla (ENSLOCG00000013878) #25	crybgx (ENSLOCG00000013888)	snapc5 (ENSLOCG00000013891)	smad6a (ENSLOCG00000013892) #26	smad3b (ENSLOCG00000013897) #27	aagab (ENSLOCG00000013907) #28	iqch (ENSLOCG00000013914) #29	zgc:162898 (ENSLOCG00000013920) #30	map2k5 (ENSLOCG00000013923) #32	skor1a (ENSLOCG00000013929) #33	PIAS1 (ENSLOCG00000013933) #34	calml4a (ENSLOCG00000013940) #35	CLN6 (ENSLOCG00000013946) #36
Osteoglossocephalai	ANCESTRAL SPECIES	148			ENSGT00940000156926.d	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f #15	ENSGT01030000234532.B.e.b.e #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.A ##19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369 #25	ENSGT00940000153499.b.b.d #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT01030000234534.B.a.b	ENSGT00950000182965.a.a	ENSGT00940000157475	ENSGT01030000234519.e.b	ENSGT00940000155837
Osteoglossiformes	ANCESTRAL SPECIES	37	ENSGT00940000156900.t	ENSGT00940000158943.e.a.a	ENSGT00390000008240.c	ENSGT00940000163963.a	ENSGT00550000074781	ENSGT00390000012336	ENSGT00940000155164.a.b	ENSGT00530000063335.A.sb	ENSGT00530000063675.a.n	ENSGT01040000240503.A.a.a.e	ENSGT00390000018400.a	ENSGT00940000154914 #18	ENSGT00940000155333.A ##19	ENSGT00530000063106.B #20	ENSGT00390000005764 #21	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00940000157369 #25	ENSGT00940000165890	ENSGT00940000158146 #26	ENSGT00940000153499.b.b.d #27	ENSGT00390000007218 #28	ENSGT00390000015942 #30	ENSGT00940000157505 #32	ENSGT00940000158440 #33	ENSGT01030000234539.a.a.b.a.b #34	ENSGT00950000182965.a.a	ENSGT00940000157475	ENSGT01030000234519.e.b	ENSGT00940000155837	ENSGT00940000158844
P. kingsleyae	MODERN SPECIES	146					ENTREP2 (ENSPKIG00000014858)	GOLM2 (ENSPKIG00000014876)	CTDSPL2 (ENSPKIG00000014916)	ENSPKIG00000014991	EIF3J (ENSPKIG00000015047)	RAB11A (ENSPKIG00000015102) #18	ENSPKIG00000015215 ##19	ENSPKIG00000015455	dis3l (ENSPKIG00000015490) #20	ENSPKIG00000015547	tipin (ENSPKIG00000015565) #21	map2k1 (ENSPKIG00000015608) #22	rpl4 (ENSPKIG00000015644) #23	lctla (ENSPKIG00000015716) #25	smad6a (ENSPKIG00000015767) #26	smad3b (ENSPKIG00000015799) #27	aagab (ENSPKIG00000015838) #28	zgc:162898 (ENSPKIG00000015892) #30	map2k5 (ENSPKIG00000015970) #32	ENSPKIG00000016124	skor1a (ENSPKIG00000016152) #33	PIAS1 (ENSPKIG00000016189) #34	morf4l1 (ENSPKIG00000016253)	UACA (ENSPKIG00000016315)	tle3a (ENSPKIG00000016380)	ENSPKIG00000016421	kif23 (ENSPKIG00000016508)
Asian bonytongue	MODERN SPECIES	2	APBA2 (ENSSFOG00015024075)	ENSSFOG00015024073	ENSSFOG00015024069	sord (ENSSFOG00015024067)	terb2 (ENSSFOG00015024060)	TJP1 (ENSSFOG00015024056)	ENSSFOG00015027780	ENSSFOG00015024053	GOLM2 (ENSSFOG00015032150)	ENSSFOG00015024048	eif3ja (ENSSFOG00015026344)	rab11a (ENSSFOG00015024042) #18	ENSSFOG00015024039 ##19	dis3l (ENSSFOG00015024038) #20	tipin (ENSSFOG00015024037) #21	map2k1 (ENSSFOG00015024032) #22	rpl4 (ENSSFOG00015024033) #23	ENSSFOG00015026128	CDH8 (ENSSFOG00015016862)	ENSSFOG00015027741	cdh11 (ENSSFOG00015016799)	cdh5 (ENSSFOG00015016780)	ENSSFOG00015024697	ENSSFOG00015016749	tk2 (ENSSFOG00015031790)	CKLF (ENSSFOG00015025019)	cmtm3 (ENSSFOG00015016707)	cmtm4 (ENSSFOG00015016680)	dync1li2 (ENSSFOG00015016630)	ENSSFOG00015016614	ENSSFOG00015016600
Clupeocephala	ANCESTRAL SPECIES	69														ENSGT00940000154914 #18	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT00510000047881	ENSGT00990000203778	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454
Euteleosteomorpha	ANCESTRAL SPECIES	1	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT00510000047881	ENSGT00990000203778	ENSGT00940000158775	ENSGT00390000016785	ENSGT00510000048454
Acanthomorphata	ANCESTRAL SPECIES	4	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b #34	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.l	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o
Cod	MODERN SPECIES	22	stra6 (ENSGMOG00000008334)	ENSGMOG00000008336	cyp11a1.1 (ENSGMOG00000008338)	nr2e3 (ENSGMOG00000008342)	hexa (ENSGMOG00000008345)	arih1 (ENSGMOG00000008347)	ENSGMOG00000036344	ppcdc (ENSGMOG00000008350)	hacd3 (ENSGMOG00000008351) #13	ints14 (ENSGMOG00000008352) #14	SLC24A1 (ENSGMOG00000024598) #15	ENSGMOG00000008354 ##16	ENSGMOG00000036396	ENSGMOG00000008355 #18	ENSGMOG00000008356 ##19	map2k1 (ENSGMOG00000008358) #22	rpl4 (ENSGMOG00000008359) #23	zwilch (ENSGMOG00000008360) #24	LCTL (ENSGMOG00000008361) #25	snapc5 (ENSGMOG00000036981)	smad6b (ENSGMOG00000008363) #26	smad3b (ENSGMOG00000029371) #27	aagab (ENSGMOG00000008365) #28	zgc:162898 (ENSGMOG00000008367) #30	skor1b (ENSGMOG00000033826) #33	PIAS1 (ENSGMOG00000008372) #34	morf4l1 (ENSGMOG00000008374)	kif23 (ENSGMOG00000017492)	ddb2 (ENSGMOG00000017517)	kbtbd4 (ENSGMOG00000017530)	rapsn (ENSGMOG00000017544)
Euacanthomorphacea	ANCESTRAL SPECIES	7	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b #34	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881
Pinecone sodierfish	MODERN SPECIES	20	islr2 (ENSMMDG00005011261)	islr2 (ENSMMDG00005011258)	stra6 (ENSMMDG00005011236)	cyp11a1.1 (ENSMMDG00005010401)	stoml1 (ENSMMDG00005010381)	nr2e3 (ENSMMDG00005010313)	hexa (ENSMMDG00005010279)	arih1 (ENSMMDG00005010264)	ENSMMDG00005010261	ppcdc (ENSMMDG00005010260)	hacd3 (ENSMMDG00005010257) #13	ints14 (ENSMMDG00005010242) #14	SLC24A1 (ENSMMDG00005010216) #15	ENSMMDG00005010200 ##16	ENSMMDG00005010191 ##19	map2k1 (ENSMMDG00005010104) #22	rpl4 (ENSMMDG00005009927) #23	zwilch (ENSMMDG00005009915) #24	LCTL (ENSMMDG00005009714) #25	snapc5 (ENSMMDG00005009708)	smad6b (ENSMMDG00005009705) #26	smad3b (ENSMMDG00005009590) #27	aagab (ENSMMDG00005009566) #28	iqch (ENSMMDG00005009565) #29	zgc:162898 (ENSMMDG00005009564) #30	skor1b (ENSMMDG00005009562) #33	PIAS1 (ENSMMDG00005009535) #34	morf4l1 (ENSMMDG00005009517)	TLE3 (ENSMMDG00005007447)	kif23 (ENSMMDG00005004943)	ddb2 (ENSMMDG00005004863)
Percomorphaceae	ANCESTRAL SPECIES	4	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f.c #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b #34	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881
Tiger tail seahorse	MODERN SPECIES	249	neil1 (ENSHCOG00000014018)	commd4 (ENSHCOG00000000394)	sema7a (ENSHCOG00000014100)	islr2 (ENSHCOG00000014105)	stra6 (ENSHCOG00000014143)	cyp11a1.1 (ENSHCOG00000014162)	stoml1 (ENSHCOG00000014203)	arih1 (ENSHCOG00000014228)	ENSHCOG00000014240	ppcdc (ENSHCOG00000014241)	hacd3 (ENSHCOG00000014277) #13	ints14 (ENSHCOG00000014315) #14	SLC24A1 (ENSHCOG00000014347) #15	ENSHCOG00000014412 ##16	ENSHCOG00000014452 ##19	map2k1 (ENSHCOG00000014666) #22	rpl4 (ENSHCOG00000014929) #23	zwilch (ENSHCOG00000014943) #24	LCTL (ENSHCOG00000014977) #25	snapc5 (ENSHCOG00000014982)	smad6b (ENSHCOG00000015011) #26	smad3b (ENSHCOG00000015055) #27	aagab (ENSHCOG00000015070) #28	zgc:162898 (ENSHCOG00000015085) #30	skor1b (ENSHCOG00000015092) #33	PIAS1 (ENSHCOG00000015129) #34	morf4l1 (ENSHCOG00000000418)	TLE3 (ENSHCOG00000015185)	kif23 (ENSHCOG00000015297)	ddb2 (ENSHCOG00000015319)	ENSHCOG00000015337
Percomorphaceae_B	ANCESTRAL SPECIES	5	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f.c #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b #34	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881
Percomorphaceae_C	ANCESTRAL SPECIES	5	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f.c #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b #34	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881
Eupercaria	ANCESTRAL SPECIES	6	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f.c #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b #34	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o.f	ENSGT00510000047881
Tetraodontidae	DUPLICATION
Tetraodontidae	ANCESTRAL SPECIES																	ENSGT00940000153487.b.b.o #22
Tetraodon	MODERN SPECIES	26	zgc:113232 (ENSTNIG00000001992)	ENSTNIG00000001990	ENSTNIG00000001988	NOX5 (ENSTNIG00000001987)	ENSTNIG00000001986	asb4 (ENSTNIG00000001985)	sgf29 (ENSTNIG00000006496)	ENSTNIG00000001983	ENSTNIG00000000870	ENSTNIG00000001980	GALNT12 (ENSTNIG00000001978)	car15 (ENSTNIG00000009091)	ENSTNIG00000001977	ENSTNIG00000001976	ENSTNIG00000001975	MAP2K1 (ENSTNIG00000001974) #22	ENSTNIG00000001973	ENSTNIG00000001972	ENSTNIG00000001971	PAQR6 (ENSTNIG00000001968)	ENSTNIG00000001967	ENSTNIG00000001964	ENSTNIG00000001963	ENSTNIG00000001962	atp6v1f (ENSTNIG00000000053)	rgma (ENSTNIG00000001957)	RRM2 (ENSTNIG00000001955)	ENSTNIG00000001507	ENSTNIG00000001951	ENSTNIG00000001950	TMEM50B (ENSTNIG00000001949)
Tetraodontidae	ANCESTRAL SPECIES	11	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f.c #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b.p #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b #27	ENSGT00390000007218 #28	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b #34	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o.e.a	ENSGT00510000047881	ENSGT00990000203778
Fugu	MODERN SPECIES	21	ENSTRUG00000027381	CA12 (ENSTRUG00000013194)	commd4 (ENSTRUG00000013548)	sema7a (ENSTRUG00000013566)	stra6 (ENSTRUG00000019577)	cyp11a1.1 (ENSTRUG00000013804)	stoml1 (ENSTRUG00000019856)	arih1 (ENSTRUG00000013998)	ENSTRUG00000022549	ppcdc (ENSTRUG00000014075)	hacd3 (ENSTRUG00000031290) #13	ints14 (ENSTRUG00000014091) #14	SLC24A1 (ENSTRUG00000014175) #15	ENSTRUG00000014237 ##16	ENSTRUG00000014394 ##19	map2k1 (ENSTRUG00000014529) #22	rpl4 (ENSTRUG00000014667) #23	zwilch (ENSTRUG00000021693) #24	LCTL (ENSTRUG00000014732) #25	snapc5 (ENSTRUG00000020463)	smad6b (ENSTRUG00000021541) #26	smad3b (ENSTRUG00000014802) #27	aagab (ENSTRUG00000014949) #28	zgc:162898 (ENSTRUG00000020437) #30	skor1b (ENSTRUG00000014982) #33	morf4l1 (ENSTRUG00000015077)	TLE3 (ENSTRUG00000015125)	kif23 (ENSTRUG00000015223)	ddb2 (ENSTRUG00000015270)	ENSTRUG00000023761	kbtbd4 (ENSTRUG00000023881)
Tetraodon	MODERN SPECIES	4	MAN2C1 (ENSTNIG00000008412)	neil1 (ENSTNIG00000008413)	commd4 (ENSTNIG00000008414)	sema7a (ENSTNIG00000008415)	islr2 (ENSTNIG00000008416)	stra6 (ENSTNIG00000008417)	cyp11a1.1 (ENSTNIG00000008418)	stoml1 (ENSTNIG00000008419)	arih1 (ENSTNIG00000008420)	ppcdc (ENSTNIG00000008421)	hacd3 (ENSTNIG00000008422) #13	ints14 (ENSTNIG00000008423) #14	SLC24A1 (ENSTNIG00000008424) #15	ENSTNIG00000008425 ##16	ENSTNIG00000008426 ##19	map2k1 (ENSTNIG00000008427) #22	rpl4 (ENSTNIG00000008428) #23	zwilch (ENSTNIG00000008429) #24	LCTL (ENSTNIG00000008430) #25	smad6b (ENSTNIG00000008431) #26	smad3b (ENSTNIG00000008432) #27	aagab (ENSTNIG00000008433) #28	skor1b (ENSTNIG00000001504) #33	PIAS1 (ENSTNIG00000008434) #34	morf4l1 (ENSTNIG00000008435)	TLE3 (ENSTNIG00000008436)	kif23 (ENSTNIG00000008437)	ENSTNIG00000008438	drd4a (ENSTNIG00000008439)	GRAMD4 (ENSTNIG00000008440)	ENSTNIG00000000775
Eupecaria_A	ANCESTRAL SPECIES	7	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f.c #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b #34	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o.f	ENSGT00510000047881
Ballan wrasse	MODERN SPECIES	40	islr2 (ENSLBEG00000016601)	stra6 (ENSLBEG00000016572)	ENSLBEG00000016546	cyp11a1.1 (ENSLBEG00000016502)	nr2e3 (ENSLBEG00000016464)	hexa (ENSLBEG00000016294)	arih1 (ENSLBEG00000016202)	ENSLBEG00000016174	ppcdc (ENSLBEG00000016135)	hacd3 (ENSLBEG00000016087) #13	ints14 (ENSLBEG00000016057) #14	SLC24A1 (ENSLBEG00000016038) #15	SLC24A1 (ENSLBEG00000016014) #15	ENSLBEG00000015940 ##16	ENSLBEG00000015733 ##19	map2k1 (ENSLBEG00000015601) #22	rpl4 (ENSLBEG00000015490) #23	zwilch (ENSLBEG00000015453) #24	LCTL (ENSLBEG00000015396) #25	snapc5 (ENSLBEG00000015381)	smad6b (ENSLBEG00000015360) #26	smad3b (ENSLBEG00000015322) #27	aagab (ENSLBEG00000015299) #28	iqch (ENSLBEG00000015224) #29	zgc:162898 (ENSLBEG00000015192) #30	skor1b (ENSLBEG00000015181) #33	PIAS1 (ENSLBEG00000015142) #34	morf4l1 (ENSLBEG00000015124)	TLE3 (ENSLBEG00000015053)	kif23 (ENSLBEG00000014888)	ddb2 (ENSLBEG00000014759)
Eupecaria_B	ANCESTRAL SPECIES	7	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f.c #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b #34	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o.f	ENSGT00510000047881
Perciformes	ANCESTRAL SPECIES	7	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f.c #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b #34	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o.f	ENSGT00510000047881
Perciformes_a	ANCESTRAL SPECIES	7	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f.c #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b #34	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o.f	ENSGT00510000047881
Pike perch	MODERN SPECIES	6	sema7a (ENSSLUG00000017872)	islr2 (ENSSLUG00000017877)	stra6 (ENSSLUG00000017890)	cyp11a1.1 (ENSSLUG00000017962)	stoml1 (ENSSLUG00000018482)	nr2e3 (ENSSLUG00000018489)	hexa (ENSSLUG00000018512)	arih1 (ENSSLUG00000018735)	ENSSLUG00000018766	ppcdc (ENSSLUG00000018769)	hacd3 (ENSSLUG00000018784) #13	ints14 (ENSSLUG00000018842) #14	SLC24A1 (ENSSLUG00000018879) #15	ENSSLUG00000018947 ##16	ENSSLUG00000019161 ##19	map2k1 (ENSSLUG00000000165) #22	rpl4 (ENSSLUG00000000272) #23	zwilch (ENSSLUG00000000305) #24	LCTL (ENSSLUG00000000329) #25	snapc5 (ENSSLUG00000000334)	smad6b (ENSSLUG00000000337) #26	smad3b (ENSSLUG00000000353) #27	aagab (ENSSLUG00000000395) #28	iqch (ENSSLUG00000000409) #29	zgc:162898 (ENSSLUG00000000425) #30	skor1b (ENSSLUG00000000431) #33	PIAS1 (ENSSLUG00000000454) #34	morf4l1 (ENSSLUG00000000519)	TLE3 (ENSSLUG00000000698)	kif23 (ENSSLUG00000000973)	ddb2 (ENSSLUG00000001144)
Channel bull blenny	MODERN SPECIES	20	CYP11A1 (ENSCGOG00000007940)	stoml1 (ENSCGOG00000008005)	ENSCGOG00000008049	ENSCGOG00000008055	stoml1 (ENSCGOG00000008136)	nr2e3 (ENSCGOG00000008164)	hexa (ENSCGOG00000008317)	arih1 (ENSCGOG00000010759)	ENSCGOG00000010801	ppcdc (ENSCGOG00000010802)	hacd3 (ENSCGOG00000010806) #13	ints14 (ENSCGOG00000010944) #14	SLC24A1 (ENSCGOG00000010978) #15	ENSCGOG00000011005 ##16	ENSCGOG00000012718 ##19	map2k1 (ENSCGOG00000012783) #22	rpl4 (ENSCGOG00000014628) #23	zwilch (ENSCGOG00000014660) #24	LCTL (ENSCGOG00000014696) #25	snapc5 (ENSCGOG00000014701)	smad6b (ENSCGOG00000014702) #26	smad3b (ENSCGOG00000014715) #27	aagab (ENSCGOG00000015616) #28	iqch (ENSCGOG00000015654) #29	zgc:162898 (ENSCGOG00000015744) #30	skor1b (ENSCGOG00000015746) #33	PIAS1 (ENSCGOG00000015764) #34	morf4l1 (ENSCGOG00000016522)	TLE3 (ENSCGOG00000017111)	kif23 (ENSCGOG00000017942)	ddb2 (ENSCGOG00000018311)
Cottioidei	ANCESTRAL SPECIES	6	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f.c #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b #34	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o.f	ENSGT00510000047881
Lumpfish	MODERN SPECIES	21	islr2 (ENSCLMG00005001020)	stra6 (ENSCLMG00005001018)	ENSCLMG00005001017	cyp11a1.1 (ENSCLMG00005001002)	stoml1 (ENSCLMG00005001000)	nr2e3 (ENSCLMG00005000996)	hexa (ENSCLMG00005000513)	arih1 (ENSCLMG00005000474)	ENSCLMG00005000456	ppcdc (ENSCLMG00005000450)	hacd3 (ENSCLMG00005000359) #13	ints14 (ENSCLMG00005000331) #14	SLC24A1 (ENSCLMG00005000323) #15	ENSCLMG00005000266 ##16	ENSCLMG00005000242 ##19	map2k1 (ENSCLMG00005000174) #22	RPL4 (ENSCLMG00005019911) #23	rpl4 (ENSCLMG00005019898) #23	zwilch (ENSCLMG00005019897) #24	LCTL (ENSCLMG00005019896) #25	snapc5 (ENSCLMG00005019894)	smad6b (ENSCLMG00005019893) #26	smad3b (ENSCLMG00005019769) #27	aagab (ENSCLMG00005019765) #28	iqch (ENSCLMG00005019726) #29	zgc:162898 (ENSCLMG00005019722) #30	skor1b (ENSCLMG00005019721) #33	PIAS1 (ENSCLMG00005019623) #34	morf4l1 (ENSCLMG00005019604)	TLE3 (ENSCLMG00005019055)	kif23 (ENSCLMG00005018591)
Stickleback	MODERN SPECIES	14	commd4 (ENSGACG00000004675)	sema7a (ENSGACG00000004680)	islr2 (ENSGACG00000004691)	stra6 (ENSGACG00000004695)	cyp11a1.1 (ENSGACG00000004713)	stoml1 (ENSGACG00000004724)	nr2e3 (ENSGACG00000004739)	hexa (ENSGACG00000004744)	arih1 (ENSGACG00000004772)	ppcdc (ENSGACG00000004795)	hacd3 (ENSGACG00000004806) #13	ints14 (ENSGACG00000004827) #14	SLC24A1 (ENSGACG00000004859) #15	ENSGACG00000004867 ##16	ENSGACG00000004885 ##19	map2k1 (ENSGACG00000004903) #22	rpl4 (ENSGACG00000004968) #23	zwilch (ENSGACG00000005043) #24	LCTL (ENSGACG00000005057) #25	snapc5 (ENSGACG00000005078)	smad6b (ENSGACG00000005085) #26	smad3b (ENSGACG00000005092) #27	aagab (ENSGACG00000005119) #28	iqch (ENSGACG00000005158) #29	zgc:162898 (ENSGACG00000005167) #30	skor1b (ENSGACG00000005171) #33	PIAS1 (ENSGACG00000005176) #34	morf4l1 (ENSGACG00000005181)	TLE3 (ENSGACG00000005213)	kif23 (ENSGACG00000005226)	ddb2 (ENSGACG00000005252)
Eupecaria_C	ANCESTRAL SPECIES	6	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f.c #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b.b #34	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o.f	ENSGT00510000047881
Gilthead seabream	MODERN SPECIES	22	islr2 (ENSSAUG00010007366)	stra6 (ENSSAUG00010007368)	ENSSAUG00010007372	cyp11a1.1 (ENSSAUG00010007387)	nr2e3 (ENSSAUG00010007491)	hexa (ENSSAUG00010007538)	arih1 (ENSSAUG00010009448)	ENSSAUG00010009484	ppcdc (ENSSAUG00010009485)	hacd3 (ENSSAUG00010009487) #13	ints14 (ENSSAUG00010009496) #14	SLC24A1 (ENSSAUG00010009505) #15	SLC24A1 (ENSSAUG00010009511) #15	ENSSAUG00010009514 ##16	ENSSAUG00010009554 ##19	map2k1 (ENSSAUG00010010913) #22	rpl4 (ENSSAUG00010011110) #23	zwilch (ENSSAUG00010011149) #24	LCTL (ENSSAUG00010011608) #25	snapc5 (ENSSAUG00010011612)	smad6b (ENSSAUG00010011616) #26	smad3b (ENSSAUG00010011625) #27	aagab (ENSSAUG00010011683) #28	iqch (ENSSAUG00010011685) #29	zgc:162898 (ENSSAUG00010011688) #30	skor1b (ENSSAUG00010011689) #33	PIAS1 (ENSSAUG00010011693) #34	kif23 (ENSSAUG00010011708)	morf4l1 (ENSSAUG00010011733)	TLE3 (ENSSAUG00010012732)	kif23 (ENSSAUG00010013254)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	4	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f.c #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b.b #34	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o.f	ENSGT00510000047881
European seabass	MODERN SPECIES	19	islr2 (ENSDLAG00005023110)	stra6 (ENSDLAG00005023124)	ENSDLAG00005023196	cyp11a1.1 (ENSDLAG00005001579)	nr2e3 (ENSDLAG00005001714)	hexa (ENSDLAG00005001862)	arih1 (ENSDLAG00005026838)	ENSDLAG00005033300	ENSDLAG00005004072	ints14 (ENSDLAG00005004123) #14	hacd3 (ENSDLAG00005004092) #13	ENSDLAG00005004229 #15	ENSDLAG00005004243 #15	ENSDLAG00005004333 ##16	ENSDLAG00005004815 ##19	map2k1 (ENSDLAG00005005002) #22	rpl4 (ENSDLAG00005005228) #23	zwilch (ENSDLAG00005005332) #24	LCTL (ENSDLAG00005005497) #25	snapc5 (ENSDLAG00005005541)	smad6b (ENSDLAG00005033513) #26	smad3b (ENSDLAG00005005574) #27	aagab (ENSDLAG00005005902) #28	zgc:162898 (ENSDLAG00005031120) #30	skor1b (ENSDLAG00005005972) #33	PIAS1 (ENSDLAG00005006027) #34	ENSDLAG00005006449	morf4l1 (ENSDLAG00005006479)	ENSDLAG00005006914	ddb2 (ENSDLAG00005010094)	kif23 (ENSDLAG00005007984)
Large yellow croaker	MODERN SPECIES	492	stra6 (ENSLCRG00005011201)	ENSLCRG00005011197	cyp11a1.1 (ENSLCRG00005010309)	stoml1 (ENSLCRG00005010303)	nr2e3 (ENSLCRG00005010302)	hexa (ENSLCRG00005010055)	arih1 (ENSLCRG00005010040)	ENSLCRG00005010032	ppcdc (ENSLCRG00005010030)	hacd3 (ENSLCRG00005009991) #13	ints14 (ENSLCRG00005009985) #14	SLC24A1 (ENSLCRG00005009983) #15	SLC24A1 (ENSLCRG00005009980) #15	ENSLCRG00005009722 ##16	ENSLCRG00005009493 ##19	map2k1 (ENSLCRG00005009481) #22	rpl4 (ENSLCRG00005008994) #23	zwilch (ENSLCRG00005008990) #24	LCTL (ENSLCRG00005008987) #25	snapc5 (ENSLCRG00005008983)	smad6b (ENSLCRG00005008982) #26	smad3b (ENSLCRG00005008972) #27	aagab (ENSLCRG00005008957) #28	iqch (ENSLCRG00005008950) #29	zgc:162898 (ENSLCRG00005008946) #30	skor1b (ENSLCRG00005008945) #33	ENSLCRG00005008944 #34	PIAS1 (ENSLCRG00005008812) #34	morf4l1 (ENSLCRG00005008690)	TLE3 (ENSLCRG00005007697)	kif23 (ENSLCRG00005007598)
Percomorphaceae_D	ANCESTRAL SPECIES	5	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f.c #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b #34	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881
Carangaria	ANCESTRAL SPECIES	6	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f.c #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b #34	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881
Carangaria_A	ANCESTRAL SPECIES		ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f.c #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b #34	ENSGT00950000182965.a.b.a.a	ENSGT00940000181062	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o
Barramundi perch	MODERN SPECIES	17	islr2 (ENSLCAG00010011486)	stra6 (ENSLCAG00010011487)	ENSLCAG00010011491	cyp11a1.1 (ENSLCAG00010011508)	nr2e3 (ENSLCAG00010011582)	hexa (ENSLCAG00010011617)	arih1 (ENSLCAG00010011638)	ENSLCAG00010011674	ppcdc (ENSLCAG00010011677)	hacd3 (ENSLCAG00010011684) #13	ints14 (ENSLCAG00010011694) #14	SLC24A1 (ENSLCAG00010011706) #15	ENSLCAG00010011723 ##16	ENSLCAG00010011752	ENSLCAG00010011758 ##19	map2k1 (ENSLCAG00010011873) #22	rpl4 (ENSLCAG00010012306) #23	zwilch (ENSLCAG00010012324) #24	LCTL (ENSLCAG00010012337) #25	snapc5 (ENSLCAG00010012353)	smad6b (ENSLCAG00010012358) #26	smad3b (ENSLCAG00010012407) #27	aagab (ENSLCAG00010012566) #28	iqch (ENSLCAG00010012573) #29	zgc:162898 (ENSLCAG00010012578) #30	skor1b (ENSLCAG00010012584) #33	PIAS1 (ENSLCAG00010012593) #34	morf4l1 (ENSLCAG00010012622)	ENSLCAG00010012673	TLE3 (ENSLCAG00010012751)	kif23 (ENSLCAG00010013211)
Seriola	ANCESTRAL SPECIES	5	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f.c #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b #34	ENSGT00950000182965.a.b.a.a	ENSGT00940000181062	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o
Greater amberjack	MODERN SPECIES	82	stra6 (ENSSDUG00000008630)	ENSSDUG00000008592	cyp11a1.1 (ENSSDUG00000008603)	stoml1 (ENSSDUG00000008576)	nr2e3 (ENSSDUG00000008558)	hexa (ENSSDUG00000008531)	arih1 (ENSSDUG00000008436)	ENSSDUG00000008409	ppcdc (ENSSDUG00000008384)	hacd3 (ENSSDUG00000008342) #13	ints14 (ENSSDUG00000008301) #14	SLC24A1 (ENSSDUG00000008280) #15	SLC24A1 (ENSSDUG00000008265) #15	ENSSDUG00000008166 ##16	ENSSDUG00000008123 ##19	map2k1 (ENSSDUG00000008098) #22	RPL4 (ENSSDUG00000008061) #23	zwilch (ENSSDUG00000008041) #24	LCTL (ENSSDUG00000008008) #25	snapc5 (ENSSDUG00000008001)	smad6b (ENSSDUG00000007977) #26	smad3b (ENSSDUG00000007957) #27	aagab (ENSSDUG00000007934) #28	iqch (ENSSDUG00000007847) #29	zgc:162898 (ENSSDUG00000007821) #30	skor1b (ENSSDUG00000007810) #33	PIAS1 (ENSSDUG00000007716) #34	morf4l1 (ENSSDUG00000007640)	ENSSDUG00000007621	TLE3 (ENSSDUG00000007577)	kif23 (ENSSDUG00000007360)
Yellowtail amberjack	MODERN SPECIES	3044	stra6 (ENSSLDG00000024104)	ENSSLDG00000024086	cyp11a1.1 (ENSSLDG00000024083)	stoml1 (ENSSLDG00000024076)	nr2e3 (ENSSLDG00000023960)	hexa (ENSSLDG00000023910)	arih1 (ENSSLDG00000023887)	ENSSLDG00000023878	ppcdc (ENSSLDG00000023867)	hacd3 (ENSSLDG00000023846) #13	ints14 (ENSSLDG00000023818) #14	ENSSLDG00000023813 #15	SLC24A1 (ENSSLDG00000023774) #15	ENSSLDG00000023736 ##16	ENSSLDG00000023706 ##19	map2k1 (ENSSLDG00000023678) #22	rpl4 (ENSSLDG00000023658) #23	zwilch (ENSSLDG00000023641) #24	LCTL (ENSSLDG00000023587) #25	snapc5 (ENSSLDG00000023570)	smad6b (ENSSLDG00000023557) #26	smad3b (ENSSLDG00000023534) #27	aagab (ENSSLDG00000023521) #28	iqch (ENSSLDG00000023494) #29	zgc:162898 (ENSSLDG00000023483) #30	skor1b (ENSSLDG00000023468) #33	PIAS1 (ENSSLDG00000023434) #34	morf4l1 (ENSSLDG00000023383)	ENSSLDG00000023373	TLE3 (ENSSLDG00000023328)	kif23 (ENSSLDG00000023233)
Pleuronectoidei	ANCESTRAL SPECIES		ENSGT00390000015516	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f.c #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b #34	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881
Tongue sole	MODERN SPECIES	16	neil1 (ENSCSEG00000006485)	commd4 (ENSCSEG00000006503)	sema7a (ENSCSEG00000006572)	islr2 (ENSCSEG00000006581)	stra6 (ENSCSEG00000006586)	ENSCSEG00000006602	cyp11a1.1 (ENSCSEG00000006612)	stoml1 (ENSCSEG00000006621)	ARIH1 (ENSCSEG00000006629)	ENSCSEG00000006651	ppcdc (ENSCSEG00000006657)	ints14 (ENSCSEG00000006667) #14	SLC24A1 (ENSCSEG00000006709) #15	ENSCSEG00000006736 ##16	ENSCSEG00000006816 ##19	map2k1 (ENSCSEG00000006882) #22	rpl4 (ENSCSEG00000006912) #23	zwilch (ENSCSEG00000006998) #24	LCTL (ENSCSEG00000007031) #25	snapc5 (ENSCSEG00000007049)	smad6b (ENSCSEG00000007053) #26	smad3b (ENSCSEG00000007063) #27	TLE3 (ENSCSEG00000007088)	morf4l1 (ENSCSEG00000007129)	PIAS1 (ENSCSEG00000007150) #34	skor1b (ENSCSEG00000007194) #33	zgc:162898 (ENSCSEG00000007204) #30	iqch (ENSCSEG00000007210) #29	aagab (ENSCSEG00000007229) #28	ENSCSEG00000007234	kif23 (ENSCSEG00000007240)
Turbot	MODERN SPECIES	1	islr2 (ENSSMAG00000015283)	stra6 (ENSSMAG00000015243)	ENSSMAG00000015209	cyp11a1.1 (ENSSMAG00000015163)	nr2e3 (ENSSMAG00000015123)	arih1 (ENSSMAG00000015075)	ENSSMAG00000015064	ppcdc (ENSSMAG00000015044)	hacd3 (ENSSMAG00000015006) #13	ints14 (ENSSMAG00000014965) #14	SLC24A1 (ENSSMAG00000014927) #15	SLC24A1 (ENSSMAG00000014916) #15	ENSSMAG00000014740 ##16	ENSSMAG00000014692 ##19	ENSSMAG00000028102	map2k1 (ENSSMAG00000014654) #22	rpl4 (ENSSMAG00000014547) #23	zwilch (ENSSMAG00000014527) #24	LCTL (ENSSMAG00000014482) #25	snapc5 (ENSSMAG00000014452)	smad6b (ENSSMAG00000014437) #26	smad3b (ENSSMAG00000014385) #27	aagab (ENSSMAG00000014364) #28	iqch (ENSSMAG00000014326) #29	zgc:162898 (ENSSMAG00000014311) #30	skor1b (ENSSMAG00000014267) #33	PIAS1 (ENSSMAG00000014246) #34	morf4l1 (ENSSMAG00000014185)	ENSSMAG00000013997	kif23 (ENSSMAG00000013831)	ddb2 (ENSSMAG00000013800)
Anabantaria	ANCESTRAL SPECIES	5	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f.c #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b #34	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881
Zig-zag eel	MODERN SPECIES	20	sema7a (ENSMAMG00000007015)	islr2 (ENSMAMG00000007007)	stra6 (ENSMAMG00000006937)	ENSMAMG00000006892	cyp11a1.1 (ENSMAMG00000006863)	nr2e3 (ENSMAMG00000006787)	hexa (ENSMAMG00000006611)	arih1 (ENSMAMG00000006559)	ENSMAMG00000006536	ppcdc (ENSMAMG00000006514)	hacd3 (ENSMAMG00000006428) #13	ints14 (ENSMAMG00000006472) #14	SLC24A1 (ENSMAMG00000006350) #15	ENSMAMG00000006239 ##16	ENSMAMG00000006178 ##19	map2k1 (ENSMAMG00000006146) #22	rpl4 (ENSMAMG00000006058) #23	zwilch (ENSMAMG00000006031) #24	LCTL (ENSMAMG00000006001) #25	snapc5 (ENSMAMG00000005992)	ENSMAMG00000024281	smad6b (ENSMAMG00000005972) #26	smad3b (ENSMAMG00000005952) #27	aagab (ENSMAMG00000005930) #28	iqch (ENSMAMG00000005883) #29	zgc:162898 (ENSMAMG00000005865) #30	skor1b (ENSMAMG00000005854) #33	PIAS1 (ENSMAMG00000005844) #34	ENSMAMG00000024365	morf4l1 (ENSMAMG00000005793)	ENSMAMG00000005747
Anabantoidei	ANCESTRAL SPECIES	5	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f.c #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b #34	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881
Siamese fighting fish	MODERN SPECIES	17	neil1 (ENSBSLG00000012950)	sema7a (ENSBSLG00000012956)	islr2 (ENSBSLG00000012959)	stra6 (ENSBSLG00000012960)	ENSBSLG00000012981	cyp11a1.1 (ENSBSLG00000013006)	hexa (ENSBSLG00000014091)	arih1 (ENSBSLG00000014624)	ENSBSLG00000014828	ppcdc (ENSBSLG00000014843)	hacd3 (ENSBSLG00000014925) #13	ints14 (ENSBSLG00000014980) #14	SLC24A1 (ENSBSLG00000015079) #15	ENSBSLG00000015093 ##16	ENSBSLG00000015132 ##19	map2k1 (ENSBSLG00000015609) #22	rpl4 (ENSBSLG00000016291) #23	zwilch (ENSBSLG00000016330) #24	LCTL (ENSBSLG00000016343) #25	snapc5 (ENSBSLG00000016407)	smad6b (ENSBSLG00000016413) #26	smad3b (ENSBSLG00000016420) #27	aagab (ENSBSLG00000016446) #28	iqch (ENSBSLG00000016456) #29	zgc:162898 (ENSBSLG00000016466) #30	skor1b (ENSBSLG00000016468) #33	PIAS1 (ENSBSLG00000016477) #34	morf4l1 (ENSBSLG00000016545)	TLE3 (ENSBSLG00000017067)	kif23 (ENSBSLG00000018655)	ddb2 (ENSBSLG00000019623)
Climbing perch	MODERN SPECIES	19	islr2 (ENSATEG00000008628)	stra6 (ENSATEG00000008644)	ENSATEG00000008870	cyp11a1.1 (ENSATEG00000008908)	stoml1 (ENSATEG00000008950)	nr2e3 (ENSATEG00000009037)	hexa (ENSATEG00000009154)	arih1 (ENSATEG00000009186)	ENSATEG00000009236	ppcdc (ENSATEG00000029359)	hacd3 (ENSATEG00000025872) #13	ints14 (ENSATEG00000009319) #14	SLC24A1 (ENSATEG00000009377) #15	ENSATEG00000009439 ##16	ENSATEG00000009531 ##19	map2k1 (ENSATEG00000009613) #22	rpl4 (ENSATEG00000009670) #23	zwilch (ENSATEG00000009702) #24	LCTL (ENSATEG00000009711) #25	snapc5 (ENSATEG00000009776)	smad6b (ENSATEG00000009784) #26	smad3b (ENSATEG00000009812) #27	aagab (ENSATEG00000009864) #28	iqch (ENSATEG00000009880) #29	C15orf61 (ENSATEG00000028998) #30	skor1b (ENSATEG00000009950) #33	PIAS1 (ENSATEG00000009975) #34	morf4l1 (ENSATEG00000009987)	ENSATEG00000010004	kif23 (ENSATEG00000010066)	ddb2 (ENSATEG00000010174)
Ovalentaria	ANCESTRAL SPECIES	7	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f.c #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b #34	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881
Atherinomorphae	ANCESTRAL SPECIES	5	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f.c #15	ENSGT01030000234532.B.e.b.f.d #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b #34	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881
Cyprinodontiformes	ANCESTRAL SPECIES	6	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f.c #15	ENSGT01030000234532.B.e.b.f.d #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b #34	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881
Aplocheiloidei	ANCESTRAL SPECIES	1	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f.c #15	ENSGT01030000234532.B.e.b.f.d #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b #34	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881
Turquoise killifish	MODERN SPECIES	1622	COMMD4 (ENSNFUG00015010389)	sema7a (ENSNFUG00015010368)	islr2 (ENSNFUG00015010359)	STRA6 (ENSNFUG00015010256)	ENSNFUG00015010235	stoml1 (ENSNFUG00015010068)	hexa (ENSNFUG00015009436)	arih1 (ENSNFUG00015008852)	ENSNFUG00015008829	ppcdc (ENSNFUG00015008823)	hacd3 (ENSNFUG00015008677) #13	VWA9 (ENSNFUG00015008651) #14	SLC24A1 (ENSNFUG00015008646) #15	DENND4A (ENSNFUG00015008588) ##16	MEGF11 (ENSNFUG00015008461) ##19	MAP2K1 (ENSNFUG00015008325) #22	rpl4 (ENSNFUG00015008298) #23	ZWILCH (ENSNFUG00015008272) #24	LCTL (ENSNFUG00015008241) #25	snapc5 (ENSNFUG00015008236)	ENSNFUG00015008234	ENSNFUG00015008231	smad6b (ENSNFUG00015008229) #26	AAGAB (ENSNFUG00015008222) #28	iqch (ENSNFUG00015008218) #29	zgc:162898 (ENSNFUG00015008213) #30	skor1b (ENSNFUG00015008209) #33	PIAS1 (ENSNFUG00015008137) #34	morf4l1 (ENSNFUG00015008050)	smad3b (ENSNFUG00015007897) #27	TLE3 (ENSNFUG00015007251)
Mangrove rivulus	MODERN SPECIES	6	islr2 (ENSKMAG00000018821)	stra6 (ENSKMAG00000018839)	cyp11a1.1 (ENSKMAG00000018869)	stoml1 (ENSKMAG00000018954)	nr2e3 (ENSKMAG00000018965)	hexa (ENSKMAG00000019076)	arih1 (ENSKMAG00000019124)	ENSKMAG00000019164	ppcdc (ENSKMAG00000019178)	hacd3 (ENSKMAG00000019204) #13	ints14 (ENSKMAG00000019255) #14	ENSKMAG00000019281 #15	SLC24A1 (ENSKMAG00000019301) #15	ENSKMAG00000019332 ##16	ENSKMAG00000019409 ##19	map2k1 (ENSKMAG00000019462) #22	rpl4 (ENSKMAG00000019520) #23	zwilch (ENSKMAG00000019558) #24	LCTL (ENSKMAG00000019610) #25	snapc5 (ENSKMAG00000019691)	smad6b (ENSKMAG00000019704) #26	smad3b (ENSKMAG00000019721) #27	aagab (ENSKMAG00000019751) #28	iqch (ENSKMAG00000019782) #29	zgc:162898 (ENSKMAG00000019840) #30	skor1b (ENSKMAG00000019852) #33	PIAS1 (ENSKMAG00000019888) #34	morf4l1 (ENSKMAG00000019932)	TLE3 (ENSKMAG00000019987)	kif23 (ENSKMAG00000020065)	ddb2 (ENSKMAG00000020178)
Cyprinodontoidei	ANCESTRAL SPECIES	7	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f.c #15	ENSGT01030000234532.B.e.b.f.d #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b #34	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881
NAME_4	ANCESTRAL SPECIES	239			ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f.c #15	ENSGT01030000234532.B.e.b.f.d #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331
Mummichog	MODERN SPECIES	427			cyp11a1.1 (ENSFHEG00000004800)	stoml1 (ENSFHEG00000004814)	nr2e3 (ENSFHEG00000004863)	hexa (ENSFHEG00000004895)	arih1 (ENSFHEG00000004916)	ENSFHEG00000004953	ppcdc (ENSFHEG00000004978)	hacd3 (ENSFHEG00000005033) #13	ints14 (ENSFHEG00000005072) #14	ENSFHEG00000005166 #15	SLC24A1 (ENSFHEG00000005221) #15	ENSFHEG00000005229 ##16	ENSFHEG00000005284 ##19	map2k1 (ENSFHEG00000005313) #22	rpl4 (ENSFHEG00000005347) #23	zwilch (ENSFHEG00000005364) #24	LCTL (ENSFHEG00000005394) #25	snapc5 (ENSFHEG00000005401)
Sheepshead minnow	MODERN SPECIES	1286															ENSCVAG00000006058 ##19	map2k1 (ENSCVAG00000006038) #22	rpl4 (ENSCVAG00000006005) #23	zwilch (ENSCVAG00000005962) #24	LCTL (ENSCVAG00000005953) #25	snapc5 (ENSCVAG00000005902)
Poeciliinae	ANCESTRAL SPECIES	3	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f.c #15	ENSGT01030000234532.B.e.b.f.d #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b #34	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881
Poecilia	ANCESTRAL SPECIES	5	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f.c #15	ENSGT01030000234532.B.e.b.f.d #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b #34	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881
NAME_6	ANCESTRAL SPECIES	38	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f.c #15	ENSGT01030000234532.B.e.b.f.d #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b #34	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881
Amazon molly	MODERN SPECIES	332	islr2 (ENSPFOG00000006027)	stra6 (ENSPFOG00000006050)	cyp11a1.1 (ENSPFOG00000006301)	stoml1 (ENSPFOG00000006419)	nr2e3 (ENSPFOG00000006516)	hexa (ENSPFOG00000006640)	arih1 (ENSPFOG00000006732)	ENSPFOG00000006845	ppcdc (ENSPFOG00000006856)	hacd3 (ENSPFOG00000006915) #13	ints14 (ENSPFOG00000006991) #14	ENSPFOG00000023612 #15	SLC24A1 (ENSPFOG00000007134) #15	ENSPFOG00000007336 ##16	ENSPFOG00000007620 ##19	map2k1 (ENSPFOG00000008205) #22	rpl4 (ENSPFOG00000008365) #23	zwilch (ENSPFOG00000008447) #24	LCTL (ENSPFOG00000008595) #25	snapc5 (ENSPFOG00000021667)	smad6b (ENSPFOG00000008775) #26	smad3b (ENSPFOG00000008802) #27	aagab (ENSPFOG00000008893) #28	iqch (ENSPFOG00000008947) #29	zgc:162898 (ENSPFOG00000009031) #30	skor1b (ENSPFOG00000009041) #33	PIAS1 (ENSPFOG00000009110) #34	morf4l1 (ENSPFOG00000009311)	TLE3 (ENSPFOG00000009535)	kif23 (ENSPFOG00000009992)	ddb2 (ENSPFOG00000010390)
Sailfin molly	MODERN SPECIES	803															ENSPLAG00000014255 ##19	map2k1 (ENSPLAG00000014191) #22	rpl4 (ENSPLAG00000014151) #23	zwilch (ENSPLAG00000014119) #24	LCTL (ENSPLAG00000014109) #25	snapc5 (ENSPLAG00000014078)	smad6b (ENSPLAG00000014074) #26
Guppy	MODERN SPECIES	458	sema7a (ENSPREG00000009720)	ENSPREG00000009748 #15	stra6 (ENSPREG00000009762)	cyp11a1.1 (ENSPREG00000009807)	stoml1 (ENSPREG00000009837)	nr2e3 (ENSPREG00000009907)	hexa (ENSPREG00000009965)	arih1 (ENSPREG00000010115)	ENSPREG00000010149	ppcdc (ENSPREG00000010163)	hacd3 (ENSPREG00000010177) #13	ints14 (ENSPREG00000010197) #14	ENSPREG00000010239 #15	ENSPREG00000010304 ##16	ENSPREG00000010362 ##19	map2k1 (ENSPREG00000010418) #22	rpl4 (ENSPREG00000010449) #23	zwilch (ENSPREG00000010534) #24	LCTL (ENSPREG00000010570) #25	snapc5 (ENSPREG00000010651)	smad6b (ENSPREG00000010660) #26	smad3b (ENSPREG00000010683) #27	aagab (ENSPREG00000010705) #28	iqch (ENSPREG00000010718) #29	zgc:162898 (ENSPREG00000010732) #30	skor1b (ENSPREG00000010750) #33	PIAS1 (ENSPREG00000010768) #34	morf4l1 (ENSPREG00000010818)	TLE3 (ENSPREG00000010877)	kif23 (ENSPREG00000010939)	ddb2 (ENSPREG00000011139)
Platyfish	MODERN SPECIES	11	sema7a (ENSXMAG00000023435)	stra6 (ENSXMAG00000015883)	cyp11a1.1 (ENSXMAG00000015863)	stoml1 (ENSXMAG00000015850)	nr2e3 (ENSXMAG00000015842)	hexa (ENSXMAG00000028285)	arih1 (ENSXMAG00000015819)	ENSXMAG00000022800	ppcdc (ENSXMAG00000015812)	hacd3 (ENSXMAG00000015797) #13	ints14 (ENSXMAG00000015780) #14	ENSXMAG00000015778 #15	SLC24A1 (ENSXMAG00000015769) #15	ENSXMAG00000003464 ##16	ENSXMAG00000003498 ##19	map2k1 (ENSXMAG00000003499) #22	rpl4 (ENSXMAG00000029529) #23	zwilch (ENSXMAG00000003532) #24	LCTL (ENSXMAG00000003540) #25	snapc5 (ENSXMAG00000003549)	smad6b (ENSXMAG00000003550) #26	smad3b (ENSXMAG00000003553) #27	aagab (ENSXMAG00000003564) #28	iqch (ENSXMAG00000003568) #29	zgc:162898 (ENSXMAG00000022123) #30	skor1b (ENSXMAG00000003579) #33	PIAS1 (ENSXMAG00000003583) #34	morf4l1 (ENSXMAG00000003604)	TLE3 (ENSXMAG00000003621)	kif23 (ENSXMAG00000003667)	ddb2 (ENSXMAG00000003694)
Oryzias	ANCESTRAL SPECIES	16	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f.c #15	ENSGT01030000234532.B.e.b.f.d #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b #34	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881
Oryzias_b	ANCESTRAL SPECIES		ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f.c #15	ENSGT01030000234532.B.e.b.f.d #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b #34	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881
Indian medaka	MODERN SPECIES	15	islr2 (ENSOMEG00000022120)	stra6 (ENSOMEG00000022103)	cyp11a1.1 (ENSOMEG00000022047)	stoml1 (ENSOMEG00000021948)	nr2e3 (ENSOMEG00000021925)	hexa (ENSOMEG00000021908)	arih1 (ENSOMEG00000021871)	ENSOMEG00000021811	ppcdc (ENSOMEG00000021783)	hacd3 (ENSOMEG00000021745) #13	ints14 (ENSOMEG00000021715) #14	ENSOMEG00000021660 #15	SLC24A1 (ENSOMEG00000021596) #15	ENSOMEG00000021522 ##16	ENSOMEG00000021299 ##19	map2k1 (ENSOMEG00000021273) #22	rpl4 (ENSOMEG00000021252) #23	zwilch (ENSOMEG00000021191) #24	LCTL (ENSOMEG00000021112) #25	snapc5 (ENSOMEG00000021026)	rps23 (ENSOMEG00000020987)	ENSOMEG00000020930	ENSOMEG00000020915	pde12 (ENSOMEG00000020900)	gmppb (ENSOMEG00000020863)	pigu (ENSOMEG00000020777)	ENSOMEG00000020747	ENSOMEG00000020732	cndp1 (ENSOMEG00000020720)	dtnbp1a (ENSOMEG00000020674)	si:ch211-198c19.1 (ENSOMEG00000020633)
Javanese ricefish	MODERN SPECIES	20	sema7a (ENSOJAG00000017835)	islr2 (ENSOJAG00000017826)	stra6 (ENSOJAG00000017706)	cyp11a1.1 (ENSOJAG00000017367)	nr2e3 (ENSOJAG00000017186)	hexa (ENSOJAG00000015950)	arih1 (ENSOJAG00000015474)	ENSOJAG00000015447	ppcdc (ENSOJAG00000015440)	hacd3 (ENSOJAG00000015219) #13	ints14 (ENSOJAG00000014921) #14	ENSOJAG00000014816 #15	SLC24A1 (ENSOJAG00000014806) #15	ENSOJAG00000014599 ##16	ENSOJAG00000013786 ##19	map2k1 (ENSOJAG00000013527) #22	rpl4 (ENSOJAG00000013399) #23	zwilch (ENSOJAG00000013246) #24	smad6b (ENSOJAG00000013057) #26	smad3b (ENSOJAG00000012829) #27	aagab (ENSOJAG00000012590) #28	iqch (ENSOJAG00000012524) #29	zgc:162898 (ENSOJAG00000012513) #30	skor1b (ENSOJAG00000012503) #33	PIAS1 (ENSOJAG00000012338) #34	morf4l1 (ENSOJAG00000012268)	TLE3 (ENSOJAG00000011183)	kif23 (ENSOJAG00000008816)	ddb2 (ENSOJAG00000008503)	ENSOJAG00000008474	kbtbd4 (ENSOJAG00000008453)
Oryzias_a	ANCESTRAL SPECIES	1	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f.c #15	ENSGT01030000234532.B.e.b.f.d #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b #27	ENSGT00390000007218 #28	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b #34	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881	ENSGT01060000249026
Japanese Medaka HdrR	MODERN SPECIES	20	islr2 (ENSORLG00000007233)	stra6 (ENSORLG00000007226)	cyp11a (ENSORLG00000007190)	nr2e3 (ENSORLG00000007175)	hexa (ENSORLG00000007169)	arih1 (ENSORLG00000007132)	ENSORLG00000007094	ppcdc (ENSORLG00000007090)	hacd3 (ENSORLG00000007078) #13	ints14 (ENSORLG00000007056) #14	ENSORLG00000028299 #15	ENSORLG00000026631	SLC24A1 (ENSORLG00000007029) #15	ENSORLG00000007022 ##16	ENSORLG00000006997 ##19	map2k1 (ENSORLG00000006926) #22	rpl4 (ENSORLG00000006882) #23	zwilch (ENSORLG00000006863) #24	LCTL (ENSORLG00000006840) #25	ENSORLG00000025403	smad6b (ENSORLG00000006825) #26	smad3b (ENSORLG00000006803) #27	aagab (ENSORLG00000006754) #28	zgc:162898 (ENSORLG00000006741) #30	skor1b (ENSORLG00000006736) #33	PIAS1 (ENSORLG00000006728) #34	morf4l1 (ENSORLG00000025632)	TLE3 (ENSORLG00000006700)	kif23 (ENSORLG00000006689)	ddb2 (ENSORLG00000006657)	ENSORLG00000029307
Chinese medaka	MODERN SPECIES	766	islr2 (ENSOSIG00000021367)	stra6 (ENSOSIG00000021369)	cyp11a1.1 (ENSOSIG00000021390)	stoml1 (ENSOSIG00000021479)	nr2e3 (ENSOSIG00000021481)	hexa (ENSOSIG00000021507)	arih1 (ENSOSIG00000021861)	ENSOSIG00000021931	ppcdc (ENSOSIG00000021935)	hacd3 (ENSOSIG00000021945) #13	ints14 (ENSOSIG00000022003) #14	ENSOSIG00000022075 #15	SLC24A1 (ENSOSIG00000022079) #15	ENSOSIG00000022109 ##16	ENSOSIG00000022181 ##19	map2k1 (ENSOSIG00000022353) #22	rpl4 (ENSOSIG00000022390) #23	zwilch (ENSOSIG00000022469) #24	LCTL (ENSOSIG00000022490) #25	snapc5 (ENSOSIG00000022501)	smad6b (ENSOSIG00000022504) #26	smad6b (ENSOSIG00000022510) #26	zgc:162898 (ENSOSIG00000000720) #30	skor1b (ENSOSIG00000000726) #33	PIAS1 (ENSOSIG00000000776) #34	morf4l1 (ENSOSIG00000001015)	TLE3 (ENSOSIG00000001248)	kif23 (ENSOSIG00000006428)	ddb2 (ENSOSIG00000010596)	ENSOSIG00000010597	kbtbd4 (ENSOSIG00000010600)
Ovalentaria_B	ANCESTRAL SPECIES	3	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f.c #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b #34	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881
Pomacentridae	ANCESTRAL SPECIES	1	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f.c #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b #34	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881
Pomacentridae_A	ANCESTRAL SPECIES	9	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f.c #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b #34	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881
Amphiprion	ANCESTRAL SPECIES	4	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f.c #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b #34	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881
Clown anemonefish	MODERN SPECIES	1348	ENSAOCG00000021698	ENSAOCG00000021780	ENSAOCG00000021823	ENSAOCG00000021829	cdpf1 (ENSAOCG00000021846)	pparaa (ENSAOCG00000021870)	ENSAOCG00000021901	atxn10 (ENSAOCG00000021916)	ENSAOCG00000021997	ENSAOCG00000022029	AKR1D1 (ENSAOCG00000022037)	KDM5A (ENSAOCG00000022150)	ENSAOCG00000022343	USP15 (ENSAOCG00000022427)	ENSAOCG00000022525 ##19	map2k1 (ENSAOCG00000022590) #22	rpl4 (ENSAOCG00000022562) #23	zwilch (ENSAOCG00000003631) #24	LCTL (ENSAOCG00000003648) #25	snapc5 (ENSAOCG00000003658)	smad6b (ENSAOCG00000003669) #26	smad3b (ENSAOCG00000000100) #27	aagab (ENSAOCG00000003690) #28	iqch (ENSAOCG00000003725) #29	zgc:162898 (ENSAOCG00000003743) #30	skor1b (ENSAOCG00000003749) #33	PIAS1 (ENSAOCG00000003771) #34	morf4l1 (ENSAOCG00000003793)	ENSAOCG00000003805	TLE3 (ENSAOCG00000003819)	kif23 (ENSAOCG00000003882)
Orange clownfish	MODERN SPECIES	18	stra6 (ENSAPEG00000020048)	ENSAPEG00000020184	cyp11a1.1 (ENSAPEG00000020236)	stoml1 (ENSAPEG00000020245)	nr2e3 (ENSAPEG00000020258)	hexa (ENSAPEG00000020294)	arih1 (ENSAPEG00000020341)	ENSAPEG00000020412	ppcdc (ENSAPEG00000020454)	hacd3 (ENSAPEG00000020472) #13	ints14 (ENSAPEG00000020521) #14	SLC24A1 (ENSAPEG00000020557) #15	SLC24A1 (ENSAPEG00000020576) #15	ENSAPEG00000020590 ##16	ENSAPEG00000020674 ##19	map2k1 (ENSAPEG00000020723) #22	rpl4 (ENSAPEG00000020765) #23	zwilch (ENSAPEG00000020879) #24	LCTL (ENSAPEG00000021009) #25	snapc5 (ENSAPEG00000021082)	smad6b (ENSAPEG00000021097) #26	smad3b (ENSAPEG00000021121) #27	aagab (ENSAPEG00000021154) #28	iqch (ENSAPEG00000021177) #29	zgc:162898 (ENSAPEG00000021209) #30	skor1b (ENSAPEG00000021226) #33	PIAS1 (ENSAPEG00000021254) #34	morf4l1 (ENSAPEG00000021329)	TLE3 (ENSAPEG00000021401)	kif23 (ENSAPEG00000021465)	ddb2 (ENSAPEG00000021600)
Spiny chromis	MODERN SPECIES	6	stra6 (ENSAPOG00000007157)	ENSAPOG00000007178	cyp11a1.1 (ENSAPOG00000007214)	stoml1 (ENSAPOG00000007241)	nr2e3 (ENSAPOG00000007343)	hexa (ENSAPOG00000007374)	arih1 (ENSAPOG00000007442)	ENSAPOG00000007458	ppcdc (ENSAPOG00000007489)	hacd3 (ENSAPOG00000007552) #13	ints14 (ENSAPOG00000007621) #14	SLC24A1 (ENSAPOG00000007942) #15	SLC24A1 (ENSAPOG00000008141) #15	ENSAPOG00000008269 ##16	ENSAPOG00000008421 ##19	map2k1 (ENSAPOG00000008515) #22	rpl4 (ENSAPOG00000008471) #23	zwilch (ENSAPOG00000008541) #24	LCTL (ENSAPOG00000008616) #25	snapc5 (ENSAPOG00000008638)	smad6b (ENSAPOG00000008675) #26	smad3b (ENSAPOG00000008731) #27	aagab (ENSAPOG00000008748) #28	iqch (ENSAPOG00000008805) #29	zgc:162898 (ENSAPOG00000008823) #30	skor1b (ENSAPOG00000008831) #33	PIAS1 (ENSAPOG00000008862) #34	morf4l1 (ENSAPOG00000008936)	TLE3 (ENSAPOG00000009026)	kif23 (ENSAPOG00000009173)	ddb2 (ENSAPOG00000009264)
Bicolor damselfish	MODERN SPECIES	317	stra6 (ENSSPAG00000018165)	ENSSPAG00000018213	cyp11a1.1 (ENSSPAG00000018244)	stoml1 (ENSSPAG00000018284)	nr2e3 (ENSSPAG00000018358)	hexa (ENSSPAG00000018566)	arih1 (ENSSPAG00000018619)	ENSSPAG00000018683	ppcdc (ENSSPAG00000018714)	hacd3 (ENSSPAG00000018731) #13	ints14 (ENSSPAG00000018803) #14	SLC24A1 (ENSSPAG00000018853) #15	SLC24A1 (ENSSPAG00000018871) #15	ENSSPAG00000018896 ##16	ENSSPAG00000018936 ##19	map2k1 (ENSSPAG00000018984) #22	rpl4 (ENSSPAG00000019006) #23	zwilch (ENSSPAG00000019063) #24	LCTL (ENSSPAG00000019086) #25	snapc5 (ENSSPAG00000019113)	smad6b (ENSSPAG00000019122) #26	smad3b (ENSSPAG00000019142) #27	aagab (ENSSPAG00000019178) #28	iqch (ENSSPAG00000019195) #29	zgc:162898 (ENSSPAG00000019226) #30	skor1b (ENSSPAG00000019235) #33
Cichlidae	ANCESTRAL SPECIES	5	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f.c #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b #34	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o	ENSGT00510000047881
Pseudocrenilabrinae	ANCESTRAL SPECIES		ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f.c #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b #34	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o.d	ENSGT00940000155837.o.c
Pseudocrenilabrinae_A	ANCESTRAL SPECIES		ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f.c #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b #34	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o.d	ENSGT00940000155837.o.c
Haplochromini	ANCESTRAL SPECIES		ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f.c #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b.a #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b #34	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o.d	ENSGT00940000155837.o.c
Burton s mouthbrooder	MODERN SPECIES	368	stra6 (ENSHBUG00000013870)	ENSHBUG00000013854	cyp11a1.1 (ENSHBUG00000013842)	stoml1 (ENSHBUG00000013845)	nr2e3 (ENSHBUG00000013798)	hexa (ENSHBUG00000013611)	arih1 (ENSHBUG00000013587)	ENSHBUG00000013489	ppcdc (ENSHBUG00000013452)	hacd3 (ENSHBUG00000013444) #13	ints14 (ENSHBUG00000013409) #14	SLC24A1 (ENSHBUG00000013345) #15	ENSHBUG00000013307 ##16	ENSHBUG00000013075 ##19	ENSHBUG00000012853	map2k1 (ENSHBUG00000012769) #22	rpl4 (ENSHBUG00000012721) #23	zwilch (ENSHBUG00000012704) #24	LCTL (ENSHBUG00000012695) #25	snapc5 (ENSHBUG00000012617)	smad6b (ENSHBUG00000012608) #26	ENSHBUG00000012576 #27
Haplochromini_A	ANCESTRAL SPECIES	1	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f.c #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b.a #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b #34	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o.d	ENSGT00940000155837.o.c
P. nyererei	MODERN SPECIES	330	islr2 (ENSPNYG00000012974)	stra6 (ENSPNYG00000013022)	ENSPNYG00000013118	cyp11a1.1 (ENSPNYG00000013158)	stoml1 (ENSPNYG00000013273)	nr2e3 (ENSPNYG00000013295)	hexa (ENSPNYG00000013367)	arih1 (ENSPNYG00000013404)	ENSPNYG00000013487	hacd3 (ENSPNYG00000013539) #13	ints14 (ENSPNYG00000013587) #14	SLC24A1 (ENSPNYG00000013638) #15	ENSPNYG00000013709 ##16	ENSPNYG00000013766 ##19	ENSPNYG00000013866	map2k1 (ENSPNYG00000014012) #22	rpl4 (ENSPNYG00000014038) #23	zwilch (ENSPNYG00000014254) #24	LCTL (ENSPNYG00000014382) #25	snapc5 (ENSPNYG00000014419)	smad6b (ENSPNYG00000014464) #26	smad3b (ENSPNYG00000014483) #27	aagab (ENSPNYG00000014514) #28	iqch (ENSPNYG00000014565) #29	zgc:162898 (ENSPNYG00000014663) #30	skor1b (ENSPNYG00000014672) #33	PIAS1 (ENSPNYG00000014701) #34	morf4l1 (ENSPNYG00000014764)	TLE3 (ENSPNYG00000014824)	kif23 (ENSPNYG00000014871)	ddb2 (ENSPNYG00000014944)
Haplochromini_B	ANCESTRAL SPECIES	28	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f.c #15	ENSGT00940000155836.A ##16	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b.a #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b #34	ENSGT00950000182965.a.b.a.a	ENSGT01030000234519.e.b.k.b	ENSGT00940000155837.o.d	ENSGT00940000155837.o.c
Zebra mbuna	MODERN SPECIES	1110	sema7a (ENSMZEG00005022544)	islr2 (ENSMZEG00005022548)	stra6 (ENSMZEG00005022550)	cyp11a1.1 (ENSMZEG00005022555)	stoml1 (ENSMZEG00005022560)	nr2e3 (ENSMZEG00005022568)	hexa (ENSMZEG00005022579)	arih1 (ENSMZEG00005022582)	ENSMZEG00005022585	ppcdc (ENSMZEG00005022599)	hacd3 (ENSMZEG00005022607) #13	ints14 (ENSMZEG00005022613) #14	SLC24A1 (ENSMZEG00005022618) #15	ENSMZEG00005022627 ##16	ENSMZEG00005022640 ##19	map2k1 (ENSMZEG00005022643) #22	rpl4 (ENSMZEG00005022644) #23	zwilch (ENSMZEG00005022662) #24	LCTL (ENSMZEG00005022665) #25	snapc5 (ENSMZEG00005022673)	smad6b (ENSMZEG00005022680) #26	smad3b (ENSMZEG00005022682) #27	aagab (ENSMZEG00005022686) #28	iqch (ENSMZEG00005022693) #29	zgc:162898 (ENSMZEG00005022698) #30	skor1b (ENSMZEG00005022702) #33	PIAS1 (ENSMZEG00005022706) #34	morf4l1 (ENSMZEG00005000059)	TLE3 (ENSMZEG00005000148)	kif23 (ENSMZEG00005000318)	ddb2 (ENSMZEG00005000480)
Eastern happy	MODERN SPECIES	19	islr2 (ENSACLG00000017072)	stra6 (ENSACLG00000017044)	ENSACLG00000017028	cyp11a1.1 (ENSACLG00000016892)	stoml1 (ENSACLG00000016876)	nr2e3 (ENSACLG00000016858)	hexa (ENSACLG00000016825)	arih1 (ENSACLG00000016725)	ENSACLG00000016653	ppcdc (ENSACLG00000016456)	hacd3 (ENSACLG00000016337) #13	ints14 (ENSACLG00000016244) #14	SLC24A1 (ENSACLG00000016209) #15	ENSACLG00000015789 ##16	ENSACLG00000015528 ##19	map2k1 (ENSACLG00000015490) #22	rpl4 (ENSACLG00000015376) #23	zwilch (ENSACLG00000015306) #24	LCTL (ENSACLG00000015185) #25	snapc5 (ENSACLG00000015178)	smad6b (ENSACLG00000015060) #26	smad3b (ENSACLG00000015005) #27	aagab (ENSACLG00000014966) #28	iqch (ENSACLG00000014950) #29	zgc:162898 (ENSACLG00000014936) #30	skor1b (ENSACLG00000014916) #33	PIAS1 (ENSACLG00000014895) #34	morf4l1 (ENSACLG00000014807)	TLE3 (ENSACLG00000014741)	kif23 (ENSACLG00000014717)	kif23 (ENSACLG00000014311)
Lyretail cichlid	DUPLICATION
Lyretail cichlid	MODERN SPECIES	44																map2k1 (ENSNBRG00000000115) #22	rpl4 (ENSNBRG00000000112) #23
Lyretail cichlid	MODERN SPECIES	305	stra6 (ENSNBRG00000017079)	ENSNBRG00000017050	cyp11a1.1 (ENSNBRG00000017032)	stoml1 (ENSNBRG00000017016)	nr2e3 (ENSNBRG00000016989)	hexa (ENSNBRG00000016965)	arih1 (ENSNBRG00000016929)	ENSNBRG00000016913	ppcdc (ENSNBRG00000016756)	hacd3 (ENSNBRG00000016668) #13	ints14 (ENSNBRG00000016618) #14	SLC24A1 (ENSNBRG00000016597) #15	ENSNBRG00000016316 ##16	ENSNBRG00000016229	ENSNBRG00000016155 ##19	map2k1 (ENSNBRG00000016125) #22	rpl4 (ENSNBRG00000015986) #23	zwilch (ENSNBRG00000015874) #24	LCTL (ENSNBRG00000015831) #25	snapc5 (ENSNBRG00000015818)	smad6b (ENSNBRG00000015802) #26	smad3b (ENSNBRG00000015781) #27	aagab (ENSNBRG00000015745) #28	iqch (ENSNBRG00000015611) #29	zgc:162898 (ENSNBRG00000015586) #30	skor1b (ENSNBRG00000015564) #33	PIAS1 (ENSNBRG00000015347) #34	morf4l1 (ENSNBRG00000015273)	TLE3 (ENSNBRG00000015223)	kif23 (ENSNBRG00000015135)	ddb2 (ENSNBRG00000015103)
Nile tilapia	MODERN SPECIES	19	stra6 (ENSONIG00000015383)	ENSONIG00000015388	cyp11a1.1 (ENSONIG00000015391)	nr2e3 (ENSONIG00000015396)	hexa (ENSONIG00000015399)	arih1 (ENSONIG00000015404)	ENSONIG00000038771	ppcdc (ENSONIG00000015408)	hacd3 (ENSONIG00000015409) #13	ints14 (ENSONIG00000015414) #14	ENSONIG00000042969 #15	SLC24A1 (ENSONIG00000015416) #15	ENSONIG00000015421 ##16	ENSONIG00000015428 ##19	ENSONIG00000034322	map2k1 (ENSONIG00000041722) #22	rpl4 (ENSONIG00000015438) #23	zwilch (ENSONIG00000015453) #24	LCTL (ENSONIG00000015457) #25	snapc5 (ENSONIG00000015460)	smad6 (ENSONIG00000027979) #26	smad3b (ENSONIG00000015464) #27	aagab (ENSONIG00000039374) #28	iqch (ENSONIG00000015469) #29	zgc:162898 (ENSONIG00000015471) #30	skor1b (ENSONIG00000041762) #33	PIAS1 (ENSONIG00000015473) #34	morf4l1 (ENSONIG00000015475)	TLE3 (ENSONIG00000015480)	ENSONIG00000039253	kif23 (ENSONIG00000040865)
Midas cichlid	MODERN SPECIES	385	islr2 (ENSACIG00000002865)	stra6 (ENSACIG00000002885)	ENSACIG00000002930	cyp11a1.1 (ENSACIG00000002952)	stoml1 (ENSACIG00000002988)	nr2e3 (ENSACIG00000003032)	hexa (ENSACIG00000003137)	arih1 (ENSACIG00000003347)	ENSACIG00000003474	ppcdc (ENSACIG00000003479)	hacd3 (ENSACIG00000003504) #13	ints14 (ENSACIG00000003523) #14	SLC24A1 (ENSACIG00000003557) #15	ENSACIG00000003590 ##16	ENSACIG00000003648 ##19	map2k1 (ENSACIG00000003699) #22	rpl4 (ENSACIG00000003731) #23	zwilch (ENSACIG00000003822) #24	LCTL (ENSACIG00000003960) #25	snapc5 (ENSACIG00000004004)	smad6b (ENSACIG00000004032) #26	smad3b (ENSACIG00000004048) #27	aagab (ENSACIG00000004078) #28	iqch (ENSACIG00000004210) #29	zgc:162898 (ENSACIG00000004275) #30	skor1b (ENSACIG00000004288) #33	PIAS1 (ENSACIG00000004315) #34	morf4l1 (ENSACIG00000004474)	TLE3 (ENSACIG00000004505)	kif23 (ENSACIG00000004552)	ddb2 (ENSACIG00000004603)
Protacanthopterygii	ANCESTRAL SPECIES	10	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744.t.b	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f #15	ENSGT00940000155836.A ##16	ENSGT00940000154914.wb #18	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b.j #26	ENSGT00940000153499.b.b.d.a.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT00510000047881	ENSGT00940000155837.o	ENSGT00990000203778	ENSGT00940000158775	ENSGT00390000016785
Northern pike	MODERN SPECIES	18	ENSELUG00000026709	cyp11a1.1 (ENSELUG00000003333)	stoml1 (ENSELUG00000003307)	nr2e3 (ENSELUG00000003264)	hexa (ENSELUG00000003240)	ARIH1 (ENSELUG00000003198)	ENSELUG00000003161	ppcdc (ENSELUG00000003138)	hacd3 (ENSELUG00000003118) #13	ints14 (ENSELUG00000003084) #14	SLC24A1 (ENSELUG00000003062) #15	ENSELUG00000003043 ##16	rab11a (ENSELUG00000025088) #18	ENSELUG00000002960 ##19	ENSELUG00000030296	map2k1 (ENSELUG00000002907) #22	ENSELUG00000002918	rpl4 (ENSELUG00000002885) #23	zwilch (ENSELUG00000002833) #24	ENSELUG00000029781	ENSELUG00000025180	LCTL (ENSELUG00000002819) #25	ENSELUG00000029160	ENSELUG00000032451	ENSELUG00000002781	smad6b (ENSELUG00000024569) #26	ENSELUG00000030325	ENSELUG00000024546	ENSELUG00000024494	ENSELUG00000024486	ENSELUG00000024480
Salmoninae	ANCESTRAL SPECIES	271	ENSGT00940000159282	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00940000158358.a	ENSGT00940000160967.e.d	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT01030000234614.C	ENSGT00940000155744.t.b	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT00940000155836.A ##16	ENSGT00940000154914.wb #18	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b.j #26	ENSGT00940000153499.b.b.d.a.b.g #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00940000158440.g.b.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b.c.b #34
Salmoninae_a	ANCESTRAL SPECIES	9	ENSGT00940000159282	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00940000158358.a	ENSGT00940000160967.e.d	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT01030000234614.C	ENSGT00940000155744.t.b	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT00940000155836.A ##16	ENSGT00940000154914.wb.b #18	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145.q #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331.k.a	ENSGT00940000158146.b.j #26	ENSGT00940000153499.b.b.d.a.b.g #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00940000158440.g.b.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b.c.b #34	ENSGT01030000234519.e.a.a.a.b.f.f	ENSGT00510000047881	ENSGT00510000048454	ENSGT00940000157760.g.b	ENSGT00440000033504.A
Salmo	ANCESTRAL SPECIES	91	ENSGT00940000159282	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00940000158358.a	ENSGT00940000160967.e.d	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT01030000234614.C	ENSGT00940000155744.t.b	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT00940000155836.A ##16	ENSGT00940000154914.wb.b #18	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145.q #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00940000180676	ENSGT00940000158146.b.j #26	ENSGT00940000153499.b.b.d.a.b.g #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00940000158440.g.b.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b.c.b #34	ENSGT01030000234519.e.a.a.a.b.f.f	ENSGT00510000047881	ENSGT00510000048454	ENSGT00940000157760.g.b	ENSGT00440000033504.A
Atlantic salmon	MODERN SPECIES	15	ENSSSAG00000008687	ENSSSAG00000115163	ENSSSAG00000098331	ENSSSAG00000098361	islr2 (ENSSSAG00000098188)	stra6 (ENSSSAG00000103656)	ENSSSAG00000009328	stoml1 (ENSSSAG00000009303)	ENSSSAG00000098010	ppcdc (ENSSSAG00000010656)	hacd3 (ENSSSAG00000009344) #13	ints14 (ENSSSAG00000106122) #14	ENSSSAG00000009435 ##16	rab11a (ENSSSAG00000083201) #18	ENSSSAG00000086055 ##19	map2k1 (ENSSSAG00000073424) #22	rpl4 (ENSSSAG00000008596) #23	zwilch (ENSSSAG00000008578) #24	LCTL (ENSSSAG00000073442) #25	snapc5 (ENSSSAG00000102443)	ENSSSAG00000073427	ENSSSAG00000117817	smad6 (ENSSSAG00000073418) #26	smad3b (ENSSSAG00000115090) #27	aagab (ENSSSAG00000082892) #28	iqch (ENSSSAG00000073414) #29	skor1b (ENSSSAG00000073404) #33	ENSSSAG00000073337 #34	ENSSSAG00000073314	ENSSSAG00000113149	ENSSSAG00000120598
River trout	MODERN SPECIES	33	ENSSTUG00000015251	neil1 (ENSSTUG00000015239)	sema7a (ENSSTUG00000015219)	islr2 (ENSSTUG00000015212)	stra6 (ENSSTUG00000015174)	stoml1 (ENSSTUG00000015155)	arih1l (ENSSTUG00000015055)	ppcdc (ENSSTUG00000015044)	ENSSTUG00000015031	ENSSTUG00000015027	hacd3 (ENSSTUG00000014954) #13	ints14 (ENSSTUG00000014861) #14	ENSSTUG00000014342 ##16	RAB11B (ENSSTUG00000014285)	ENSSTUG00000014230 ##19	map2k1 (ENSSTUG00000014171) #22	rpl4 (ENSSTUG00000014130) #23	zwilch (ENSSTUG00000014067) #24	LCTL (ENSSTUG00000013900) #25	ENSSTUG00000013877	ENSSTUG00000013846	smad6b (ENSSTUG00000013843) #26	smad3b (ENSSTUG00000013733) #27	aagab (ENSSTUG00000013689) #28	iqch (ENSSTUG00000013633) #29	ENSSTUG00000009581	ddb2 (ENSSTUG00000009449)	ENSSTUG00000009248	ENSSTUG00000009190	ENSSTUG00000009180	ENSSTUG00000009161
Oncorhynchus	ANCESTRAL SPECIES	90	ENSGT00940000159282	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00940000158358.a	ENSGT00940000160967.e.d	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT01030000234614.C	ENSGT00940000155744.t.b	ENSGT00440000038107.n	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT00940000155836.A ##16	ENSGT00940000154914.wb.b #18	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145.q #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331.k.a	ENSGT00940000158146.b.j #26	ENSGT00940000153499.b.b.d.a.b.g #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00940000158440.g.b.g.b #33	ENSGT01030000234539.a.a.b.a.b.a.b.c.b #34	ENSGT01030000234519.e.a.a.a.b.f.f	ENSGT00510000047881
Rainbow trout	MODERN SPECIES	22	ENSOMYG00000015565	neil1 (ENSOMYG00000015576)	sema7a (ENSOMYG00000015585)	islr2 (ENSOMYG00000056245)	stra6 (ENSOMYG00000015816)	ENSOMYG00000067561	ENSOMYG00000057849	ENSOMYG00000050176	stoml1 (ENSOMYG00000015767)	ENSOMYG00000058050	ppcdc (ENSOMYG00000023939)	ENSOMYG00000048541 #13	ints14 (ENSOMYG00000015775) #14	ENSOMYG00000051025 ##16	rab11a (ENSOMYG00000028574) #18	map2k1 (ENSOMYG00000070762) #22	rpl4 (ENSOMYG00000015672) #23	zwilch (ENSOMYG00000064330) #24	LCTL (ENSOMYG00000051376) #25	snapc5 (ENSOMYG00000026529)	smad6b (ENSOMYG00000035050) #26	ENSOMYG00000074334	ENSOMYG00000055253	smad3b (ENSOMYG00000040088) #27	ENSOMYG00000023824 #28	iqch (ENSOMYG00000073930) #29	skor1b (ENSOMYG00000015835) #33	ENSOMYG00000071075 #34	ENSOMYG00000054822	ENSOMYG00000064085	ENSOMYG00000049187
Oncorhynchus_a	ANCESTRAL SPECIES	115	ENSGT00940000159282	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00940000158358.a	ENSGT00940000160967.e.d	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT01030000234614.C	ENSGT00940000155744.t.b	ENSGT00440000038107.n	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT00940000155836.A ##16	ENSGT00940000154914.wb.b #18	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145.q #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331.k.a	ENSGT00390000010331.l	ENSGT00940000158146.b.j #26
Coho salmon	MODERN SPECIES	1	ENSOKIG00005018210	stoml1 (ENSOKIG00005018220)	ARIH1 (ENSOKIG00005018296)	ppcdc (ENSOKIG00005018398)	hacd3 (ENSOKIG00005018449) #13	ints14 (ENSOKIG00005018507) #14	ENSOKIG00005018559	ENSOKIG00005018622 ##16	rab11a (ENSOKIG00005018981) #18	ENSOKIG00005019075 ##19	ENSOKIG00005019846	ENSOKIG00005019852	ENSOKIG00005019867	ENSOKIG00005019877	ENSOKIG00005019888	map2k1 (ENSOKIG00005019896) #22	rpl4 (ENSOKIG00005019951) #23	zwilch (ENSOKIG00005020066) #24	LCTL (ENSOKIG00005020135) #25	snapc5 (ENSOKIG00005020275)	smad6b (ENSOKIG00005020286) #26	ENSOKIG00005020296	ENSOKIG00005020309	CD151 (ENSOKIG00005020322)	ENSOKIG00005020382	ddb2 (ENSOKIG00005020530)	ENSOKIG00005020544	ENSOKIG00005020649	ENSOKIG00005024128 #34	ENSOKIG00005024437	ENSOKIG00005024451
Chinook salmon	MODERN SPECIES		ANO5 (ENSOTSG00005000103)	ENSOTSG00005000101	KCNC1 (ENSOTSG00005000100)	tmem138 (ENSOTSG00005000097)	tmem258 (ENSOTSG00005000096)	ENSOTSG00005000095	ENSOTSG00005000094	rnf170 (ENSOTSG00005000093)	ENSOTSG00005000092	ENSOTSG00005000091	tmem64 (ENSOTSG00005000090)	stra6 (ENSOTSG00005000088)	stoml1 (ENSOTSG00005000087)	ENSOTSG00005000086	ppcdc (ENSOTSG00005000085)	map2k1 (ENSOTSG00005000083) #22	rpl4 (ENSOTSG00005000074) #23	zwilch (ENSOTSG00005000071) #24	LCTL (ENSOTSG00005000064) #25	snapc5 (ENSOTSG00005000062)	ENSOTSG00005000061	ENSOTSG00005000060	ENSOTSG00005000059	bnip2 (ENSOTSG00005000058)	foxb1a (ENSOTSG00005000056)	ENSOTSG00005000052
Otomorpha	ANCESTRAL SPECIES		ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.b #34	ENSGT00510000047881	ENSGT00990000203778	ENSGT00940000158775	ENSGT00390000016785
Otophysi	ANCESTRAL SPECIES	4	ENSGT00950000183151.a.a.b.b	ENSGT00940000156356	ENSGT00940000157335	ENSGT01050000244866.C	ENSGT00940000156011	ENSGT00390000015052	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b.i #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.b #34	ENSGT01030000234518.B.a.b.a.b.j	ENSGT00950000182965.a.b.a.a	ENSGT01030000235447	ENSGT00940000157475.s.b
Characiphysae	ANCESTRAL SPECIES	8	ENSGT00950000183151.a.a.b.b	ENSGT00940000156356	ENSGT00940000157335	ENSGT01050000244866.C	ENSGT00940000156011	ENSGT00390000015052	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b.i #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.b #34	ENSGT01030000234518.B.a.b.a.b.j	ENSGT00950000182965.a.b.a.a	ENSGT01030000235447	ENSGT00940000157475.s.b
Channel catfish	MODERN SPECIES	23	sf3b3 (ENSIPUG00000020435)	st3gal2 (ENSIPUG00000020529)	aars (ENSIPUG00000020538)	ENSIPUG00000020630	pllp (ENSIPUG00000020662)	arl2bp (ENSIPUG00000020669)	arih1 (ENSIPUG00000020676)	c4h15orf39 (ENSIPUG00000021229)	ppcdc (ENSIPUG00000021242)	hacd3 (ENSIPUG00000021269) #13	vwa9 (ENSIPUG00000021289) #14	slc24a1 (ENSIPUG00000021316) #15	dennd4a (ENSIPUG00000021338) #16	Rab11a (ENSIPUG00000021401) #18	megf11 (ENSIPUG00000021414) ##19	map2k1 (ENSIPUG00000021471) #22	rpl4-b (ENSIPUG00000021502) #23	zwilch (ENSIPUG00000021572) #24	LCTL (ENSIPUG00000021616) #25	snapc5 (ENSIPUG00000021633)	SMAD6 (ENSIPUG00000021637) #26	smad3b (ENSIPUG00000021649) #27	AAGAB (ENSIPUG00000021694) #28	iqch (ENSIPUG00000021716) #29	c4h15orf61 (ENSIPUG00000021762) #30	skor1b (ENSIPUG00000022829) #33	PIAS1 (ENSIPUG00000022852) #34	morf4l1 (ENSIPUG00000022885)	ENSIPUG00000022933	gro2 (ENSIPUG00000022942)	kif23 (ENSIPUG00000022986)
Characiphysae_b	ANCESTRAL SPECIES	4	ENSGT00950000183151.a.a.b.b	ENSGT00940000156356	ENSGT00940000157335	ENSGT01050000244866.C	ENSGT00940000156011	ENSGT00390000015052	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b.i #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.b #34	ENSGT01030000234518.B.a.b.a.b.j	ENSGT00950000182965.a.b.a.a	ENSGT01030000235447	ENSGT00940000157475.s.b
Electric eel	MODERN SPECIES	655								ppcdc (ENSEEEG00000022669)	hacd3 (ENSEEEG00000022666) #13	ints14 (ENSEEEG00000022663) #14	SLC24A1 (ENSEEEG00000022661) #15	dennd4a (ENSEEEG00000022659) #16	rab11a (ENSEEEG00000022658) #18	ENSEEEG00000022657	ENSEEEG00000022655 ##19	map2k1 (ENSEEEG00000022402) #22	slc28a1 (ENSEEEG00000022360)	ENSEEEG00000022359	ENSEEEG00000022358
Characoidei	ANCESTRAL SPECIES	30	ENSGT00950000183151.a.a.b.b	ENSGT00940000156356	ENSGT00940000157335	ENSGT01050000244866.C	ENSGT00940000156011	ENSGT00390000015052	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b.i #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.b #34	ENSGT01030000234518.B.a.b.a.b.j	ENSGT00950000182965.a.b.a.a	ENSGT00940000157475.t	ENSGT01030000235447
Mexicana tetra	MODERN SPECIES	9	sf3b3 (ENSAMXG00000003410)	st3gal2 (ENSAMXG00000003386)	aars1 (ENSAMXG00000003368)	ENSAMXG00000003354	pllp (ENSAMXG00000037550)	arl2bp (ENSAMXG00000039327)	arih1 (ENSAMXG00000003281)	ENSAMXG00000003257	ppcdc (ENSAMXG00000038023)	hacd3 (ENSAMXG00000036622) #13	ints14 (ENSAMXG00000003207) #14	SLC24A1 (ENSAMXG00000003180) #15	dennd4a (ENSAMXG00000003173) #16	rab11a (ENSAMXG00000003155) #18	ENSAMXG00000003031 ##19	map2k1 (ENSAMXG00000003000) #22	rpl4 (ENSAMXG00000029678) #23	zwilch (ENSAMXG00000042209) #24	LCTL (ENSAMXG00000002915) #25	snapc5 (ENSAMXG00000035746)	ENSAMXG00000042016	smad6b (ENSAMXG00000002889) #26	smad3b (ENSAMXG00000002880) #27	aagab (ENSAMXG00000034247) #28	iqch (ENSAMXG00000002847) #29	zgc:162898 (ENSAMXG00000002824) #30	ENSAMXG00000039689	skor1b (ENSAMXG00000002804) #33	PIAS1 (ENSAMXG00000002784) #34	morf4l1 (ENSAMXG00000002753)	ENSAMXG00000040454
Red-bellied piranha	MODERN SPECIES		sf3b3 (ENSPNAG00000015419)	st3gal2 (ENSPNAG00000015314)	aars1 (ENSPNAG00000015269)	ENSPNAG00000015237	pllp (ENSPNAG00000015182)	arl2bp (ENSPNAG00000015169)	arih1 (ENSPNAG00000015135)	ENSPNAG00000015080	ppcdc (ENSPNAG00000015060)	hacd3 (ENSPNAG00000015056) #13	ints14 (ENSPNAG00000015024) #14	SLC24A1 (ENSPNAG00000003338) #15	dennd4a (ENSPNAG00000014917) #16	rab11a (ENSPNAG00000014863) #18	ENSPNAG00000014837 ##19	map2k1 (ENSPNAG00000014728) #22	rpl4 (ENSPNAG00000014698) #23	zwilch (ENSPNAG00000014620) #24	LCTL (ENSPNAG00000003168) #25	snapc5 (ENSPNAG00000014521)	smad6b (ENSPNAG00000014508) #26	smad3b (ENSPNAG00000003144) #27	aagab (ENSPNAG00000014473) #28	iqch (ENSPNAG00000014434) #29	zgc:162898 (ENSPNAG00000003117) #30	skor1b (ENSPNAG00000014398) #33	PIAS1 (ENSPNAG00000014367) #34	ENSPNAG00000014295	morf4l1 (ENSPNAG00000014280)	ENSPNAG00000014247	tle3a (ENSPNAG00000003051)
Cyprinoidei	ANCESTRAL SPECIES	10	ENSGT00950000183151.a.a.b.b	ENSGT00940000156356	ENSGT00940000157335	ENSGT01050000244866.C	ENSGT00940000156011	ENSGT00390000015052	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #18	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331	ENSGT00940000158146.b #26	ENSGT00940000153499.b.b.d.a.b.i #27	ENSGT00390000007218 #28	ENSGT00390000008908 #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b #33	ENSGT01030000234539.a.a.b.a.b.b #34	ENSGT01030000234518.B.a.b.a.b.j	ENSGT00950000182965.a.b.a.a	ENSGT01030000235447	ENSGT00940000157475.s.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	123	ENSGT00950000183151.a.a.b.b.i	ENSGT00940000156356.d	ENSGT00940000157335.l	ENSGT01050000244866.C.b	ENSGT00940000156011.`b	ENSGT00390000015052.b	ENSGT00940000155744.g.a	ENSGT00940000169185.a	ENSGT00440000038107.o	ENSGT00530000062962.b.a.f.a #13	ENSGT00390000009486.e #14	ENSGT01030000234532.B.e.b.f.b #15	ENSGT00940000155836.B.c #16	ENSGT00940000154914.tb #18	ENSGT00940000155333.A.b.b ##19	ENSGT00940000153487.b.b.s #22	ENSGT00390000018145.f #23	ENSGT00940000157369.a.c #25	ENSGT00390000010331.n	ENSGT00940000158146.b.f #26	ENSGT00940000153499.b.b.d.a.b.i.b #27	ENSGT00390000007218.q #28	ENSGT00390000008908.a #29
Goldfish	MODERN SPECIES	37	sf3b3 (ENSCARG00000065369)	st3gal2 (ENSCARG00000065325)	aars1 (ENSCARG00000065093)	ENSCARG00000064321	pllp (ENSCARG00000064293)	arl2bp (ENSCARG00000064261)	arih1 (ENSCARG00000063977)	ENSCARG00000063954	ppcdc (ENSCARG00000063932)	hacd3 (ENSCARG00000063827) #13	ints14 (ENSCARG00000063746) #14	SLC24A1 (ENSCARG00000063727) #15	dennd4a (ENSCARG00000062471) #16	rab11a (ENSCARG00000062368) #18	ENSCARG00000058612 ##19	map2k1 (ENSCARG00000057706) #22	rpl4 (ENSCARG00000057625) #23	LCTL (ENSCARG00000057492) #25	snapc5 (ENSCARG00000057463)	smad6b (ENSCARG00000057432) #26	smad3b (ENSCARG00000057166) #27	aagab (ENSCARG00000057137) #28	ENSCARG00000057132	skor1b (ENSCARG00000057106) #33	ENSCARG00000057077 #34	ENSCARG00000057062	ric8b (ENSCARG00000057023)	rfx4 (ENSCARG00000056887)	mlycd (ENSCARG00000056868)	clns1a (ENSCARG00000056853)	aqp11 (ENSCARG00000056843)
Cyprininae_a	ANCESTRAL SPECIES	131	ENSGT00950000183151.a.a.b.b.i	ENSGT00940000156356.d	ENSGT00940000157335.l	ENSGT01050000244866.C.b	ENSGT00940000156011.`b	ENSGT00390000015052.b	ENSGT00940000155744.g.a	ENSGT00940000169185.a	ENSGT00440000038107.o	ENSGT00530000062962.b.a.f.a #13	ENSGT00390000009486.e #14	ENSGT01030000234532.B.e.b.f.b #15	ENSGT00940000155836.B.c #16	ENSGT00940000154914.tb #18	ENSGT00940000155333.A.b.b ##19	ENSGT00940000153487.b.b.s #22	ENSGT00390000018145.f #23	ENSGT00390000013696.f #24	ENSGT00940000157369.a.c #25	ENSGT00390000010331.n	ENSGT00940000158146.b.f #26	ENSGT00940000153499.b.b.d.a.b.i.b #27	ENSGT00390000007218.q #28	ENSGT00390000008908.a #29
Common carp reference	MODERN SPECIES	9	sf3b3 (ENSCCRG00000024068)	st3gal2 (ENSCCRG00000076295)	aars1 (ENSCCRG00000005376)	ENSCCRG00000006513	pllp (ENSCCRG00000005176)	arl2bp (ENSCCRG00000005183)	arih1 (ENSCCRG00000025952)	ENSCCRG00000081007	ppcdc (ENSCCRG00000018299)	hacd3 (ENSCCRG00000017852) #13	ints14 (ENSCCRG00000047151) #14	SLC24A1 (ENSCCRG00000066083) #15	dennd4a (ENSCCRG00000020231) #16	rab11a (ENSCCRG00000059058) #18	ENSCCRG00000009371 ##19	map2k1 (ENSCCRG00000035016) #22	rpl4 (ENSCCRG00000034465) #23	LCTL (ENSCCRG00000034940) #25	snapc5 (ENSCCRG00000076911)	smad6b (ENSCCRG00000028531) #26	smad3b (ENSCCRG00000014185) #27	aagab (ENSCCRG00000014234) #28	iqch (ENSCCRG00000014287) #29	ENSCCRG00000064665	skor1b (ENSCCRG00000043233) #33	PIAS1 (ENSCCRG00000043261) #34	ENSCCRG00000031056	morf4l1 (ENSCCRG00000031057)	ENSCCRG00000064433	ENSCCRG00000043403	tle3a (ENSCCRG00000029847)
Golden-line barbel	MODERN SPECIES	54	SF3B3 (ENSSGRG00000030799)	ENSSGRG00000030794	ENSSGRG00000030795	st3gal2 (ENSSGRG00000030792)	aars1 (ENSSGRG00000029996)	ENSSGRG00000029983	arih1 (ENSSGRG00000029910)	ENSSGRG00000029906	ppcdc (ENSSGRG00000029905)	hacd3 (ENSSGRG00000029894) #13	ints14 (ENSSGRG00000029760) #14	SLC24A1 (ENSSGRG00000029751) #15	dennd4a (ENSSGRG00000028490) #16	rab11a (ENSSGRG00000028469) #18	ENSSGRG00000028343 ##19	map2k1 (ENSSGRG00000026412) #22	rpl4 (ENSSGRG00000026237) #23	zwilch (ENSSGRG00000026228) #24	LCTL (ENSSGRG00000026226) #25	snapc5 (ENSSGRG00000026223)	smad6b (ENSSGRG00000026221) #26	smad3b (ENSSGRG00000025385) #27	aagab (ENSSGRG00000025352) #28	iqch (ENSSGRG00000025341) #29	zgc:162898 (ENSSGRG00000025335) #30	skor1b (ENSSGRG00000025333) #33	ENSSGRG00000025332 #34	PIAS1 (ENSSGRG00000025330) #34	morf4l1 (ENSSGRG00000025132)	ENSSGRG00000025130	tle3a (ENSSGRG00000022755)
Cyprininae	ANCESTRAL SPECIES	74	ENSGT00950000183151.a.a.b.b.j	ENSGT00940000156356.c	ENSGT00940000157335.k	ENSGT01050000244866.C.a	ENSGT00940000156011.ab	ENSGT00390000015052.a	ENSGT00940000155744.g.b	ENSGT00940000169185.b	ENSGT00440000038107.p	ENSGT00530000062962.b.a.f.b #13	ENSGT00390000009486.f #14	ENSGT01030000234532.B.e.b.f.a #15	ENSGT00940000155836.B.d #16	ENSGT00940000154914.ub #18	ENSGT00940000155333.A.b.a ##19	ENSGT00940000153487.b.b.t #22	ENSGT00390000018145.e #23	ENSGT00390000013696 #24	ENSGT00940000157369.a.d #25	ENSGT00390000010331.m	ENSGT00940000158146.b.e #26	ENSGT00940000153499.b.b.d.a.b.i.a #27	ENSGT00390000007218.r #28	ENSGT00390000008908.b #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b.b #33	ENSGT01030000234539.a.a.b.a.b.b.a #34	ENSGT00950000182965.a.b.a.a.c	ENSGT01030000235447	ENSGT00940000157475.s.b.b	ENSGT01030000234519.e.b.j.b.a.b
Goldfish	MODERN SPECIES	9	sf3b3 (ENSCARG00000011537)	st3gal2 (ENSCARG00000011584)	aars1 (ENSCARG00000011630)	ENSCARG00000011736	pllp (ENSCARG00000011891)	arl2bp (ENSCARG00000011894)	arih1 (ENSCARG00000011916)	ENSCARG00000011988	ppcdc (ENSCARG00000011991)	hacd3 (ENSCARG00000012002) #13	ints14 (ENSCARG00000012147) #14	SLC24A1 (ENSCARG00000012194) #15	dennd4a (ENSCARG00000012263) #16	rab11a (ENSCARG00000013410) #18	ENSCARG00000013448 ##19	map2k1 (ENSCARG00000013618) #22	rpl4 (ENSCARG00000013743) #23	zwilch (ENSCARG00000013771) #24	LCTL (ENSCARG00000013798) #25	snapc5 (ENSCARG00000013818)	smad6b (ENSCARG00000013826) #26	smad3b (ENSCARG00000013852) #27	aagab (ENSCARG00000013875) #28	iqch (ENSCARG00000013907) #29	zgc:162898 (ENSCARG00000013951) #30	skor1b (ENSCARG00000013956) #33	PIAS1 (ENSCARG00000013991) #34	ENSCARG00000014119	morf4l1 (ENSCARG00000014135)	ENSCARG00000014215	tle3a (ENSCARG00000014265)
Cyprininae_a	ANCESTRAL SPECIES	15	ENSGT00950000183151.a.a.b.b.j	ENSGT00940000156356.c	ENSGT00940000157335.k	ENSGT01050000244866.C.a	ENSGT00940000156011.ab	ENSGT00390000015052.a	ENSGT00940000155744.g.b	ENSGT00940000169185.b	ENSGT00440000038107.p	ENSGT00530000062962.b.a.f.b #13	ENSGT00390000009486.f #14	ENSGT01030000234532.B.e.b.f.a #15	ENSGT00940000155836.B.d #16	ENSGT00940000154914.ub #18	ENSGT00940000155333.A.b.a ##19	ENSGT00940000153487.b.b.t #22	ENSGT00390000018145.e #23	ENSGT00390000013696.e #24	ENSGT00940000157369.a.d #25	ENSGT00390000010331.m	ENSGT00940000158146.b.e #26	ENSGT00940000153499.b.b.d.a.b.i.a #27	ENSGT00390000007218.r #28	ENSGT00390000008908.b #29	ENSGT00390000015942 #30	ENSGT00940000158440.g.b.b #33	ENSGT01030000234539.a.a.b.a.b.b.a #34	ENSGT00950000182965.a.b.a.a.c	ENSGT01030000235447.a	ENSGT00940000157475.s.b.b	ENSGT01030000234519.e.b.j.b.a.b
Golden-line barbel	MODERN SPECIES	224									ppcdc (ENSSGRG00000053835)	hacd3 (ENSSGRG00000053825) #13	ints14 (ENSSGRG00000053784) #14	SLC24A1 (ENSSGRG00000053777) #15	dennd4a (ENSSGRG00000053530) #16	rab11a (ENSSGRG00000053474) #18	ENSSGRG00000053461 ##19	map2k1 (ENSSGRG00000053371) #22	rpl4 (ENSSGRG00000053329) #23	zwilch (ENSSGRG00000053327) #24	LCTL (ENSSGRG00000053324) #25	snapc5 (ENSSGRG00000053323)	smad6b (ENSSGRG00000053322) #26	ENSSGRG00000053321 #27	aagab (ENSSGRG00000053318) #28	iqch (ENSSGRG00000053315) #29	zgc:162898 (ENSSGRG00000053314) #30	ENSSGRG00000053214 #34	ENSSGRG00000053206	morf4l1 (ENSSGRG00000053205)	ENSSGRG00000053204	tle3a (ENSSGRG00000051652)	ENSSGRG00000051635
Common carp reference	MODERN SPECIES	19	sf3b3 (ENSCCRG00000026756)	st3gal2 (ENSCCRG00000077284)	aars1 (ENSCCRG00000004748)	ENSCCRG00000005086	arl2bp (ENSCCRG00000058906)	arih1 (ENSCCRG00000005206)	ENSCCRG00000071734	ppcdc (ENSCCRG00000072999)	hacd3 (ENSCCRG00000047136) #13	ints14 (ENSCCRG00000017792) #14	SLC24A1 (ENSCCRG00000009282) #15	ENSCCRG00000072431	dennd4a (ENSCCRG00000009528) #16	rab11a (ENSCCRG00000009402) #18	ENSCCRG00000073950 ##19	map2k1 (ENSCCRG00000077344) #22	zwilch (ENSCCRG00000034439) #24	LCTL (ENSCCRG00000017070) #25	snapc5 (ENSCCRG00000078719)	smad6b (ENSCCRG00000017061) #26	smad3b (ENSCCRG00000067387) #27	aagab (ENSCCRG00000016912) #28	iqch (ENSCCRG00000077345) #29	skor1b (ENSCCRG00000014176) #33	PIAS1 (ENSCCRG00000030976) #34	morf4l1 (ENSCCRG00000043359)	ENSCCRG00000076672	tle3a (ENSCCRG00000030091)	kif23 (ENSCCRG00000015859)	ddb2 (ENSCCRG00000061260)	kbtbd4 (ENSCCRG00000057703)
Zebrafish	MODERN SPECIES	9	aars1 (ENSDARG00000069142)	ENSDARG00000093381	pllp (ENSDARG00000062756)	arl2bp (ENSDARG00000025383)	arih1 (ENSDARG00000003616)	ENSDARG00000069168	ppcdc (ENSDARG00000033020)	hacd3 (ENSDARG00000016038) #13	ints14 (ENSDARG00000041429) #14	SLC24A1 (ENSDARG00000041431) #15	dennd4a (ENSDARG00000062721) #16	ENSDARG00000092535	ENSDARG00000069189	rab11a (ENSDARG00000041450) #18	ENSDARG00000062686 ##19	map2k1 (ENSDARG00000007825) #22	rpl4 (ENSDARG00000041182) #23	zwilch (ENSDARG00000057100) #24	LCTL (ENSDARG00000016337) #25	snapc5 (ENSDARG00000062476)	smad6b (ENSDARG00000031763) #26	smad3b (ENSDARG00000010207) #27	aagab (ENSDARG00000041170) #28	iqch (ENSDARG00000015476) #29	C18H15orf61 (ENSDARG00000111588) #30	skor1b (ENSDARG00000062448) #33	PIAS1 (ENSDARG00000062445) #34	ENSDARG00000069246	morf4l1 (ENSDARG00000041155)	ENSDARG00000069250	tle3a (ENSDARG00000002787)
Clupeiformes	ANCESTRAL SPECIES	4	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366.cb	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b.f #15	ENSGT00940000155836.B.e #16	ENSGT00940000154914 #18	ENSGT00940000155333.A.b ##19	ENSGT00940000153487.b.b #22	ENSGT00390000018145 #23	ENSGT00390000013696 #24	ENSGT00940000157369.a #25	ENSGT00390000010331
Atlantic herring	DUPLICATION
Atlantic herring	MODERN SPECIES	19	ENSCHAG00000004932	ENSCHAG00000004915	cyp11a1.1 (ENSCHAG00000004846)	stoml1 (ENSCHAG00000004806)	nr2e3 (ENSCHAG00000004783)	hexa (ENSCHAG00000004565)	arih1 (ENSCHAG00000004536)	ENSCHAG00000004518	ppcdc (ENSCHAG00000004502)	hacd3 (ENSCHAG00000004038) #13	ints14 (ENSCHAG00000003814) #14	SLC24A1 (ENSCHAG00000003677) #15	dennd4a (ENSCHAG00000003270) #16	rab11a (ENSCHAG00000002433) #18	ENSCHAG00000000584 ##19	map2k1 (ENSCHAG00000000220) #22	snapc5 (ENSCHAG00000000160)	LCTL (ENSCHAG00000000142) #25	zwilch (ENSCHAG00000000117) #24	rpl4 (ENSCHAG00000023757) #23	map2k1 (ENSCHAG00000023747) #22	smad6b (ENSCHAG00000023735) #26	ENSCHAG00000023728	smad6b (ENSCHAG00000023725) #26	ENSCHAG00000023724	SMAD3 (ENSCHAG00000023688) #27	aagab (ENSCHAG00000023674) #28	iqch (ENSCHAG00000023667) #29	zgc:162898 (ENSCHAG00000023666) #30	skor1b (ENSCHAG00000023652) #33	PIAS1 (ENSCHAG00000023617) #34
Atlantic herring	MODERN SPECIES	19	TLE3 (ENSCHAG00000022577)	ENSCHAG00000023324	ENSCHAG00000023330	morf4l1 (ENSCHAG00000023342)	ENSCHAG00000023614	PIAS1 (ENSCHAG00000023617) #34	skor1b (ENSCHAG00000023652) #33	zgc:162898 (ENSCHAG00000023666) #30	iqch (ENSCHAG00000023667) #29	aagab (ENSCHAG00000023674) #28	SMAD3 (ENSCHAG00000023688) #27	ENSCHAG00000023724	smad6b (ENSCHAG00000023725) #26	ENSCHAG00000023728	smad6b (ENSCHAG00000023735) #26	map2k1 (ENSCHAG00000023747) #22	rpl4 (ENSCHAG00000023757) #23	zwilch (ENSCHAG00000000117) #24	LCTL (ENSCHAG00000000142) #25	snapc5 (ENSCHAG00000000160)	map2k1 (ENSCHAG00000000220) #22	ENSCHAG00000000584 ##19	rab11a (ENSCHAG00000002433) #18	dennd4a (ENSCHAG00000003270) #16	SLC24A1 (ENSCHAG00000003677) #15	ints14 (ENSCHAG00000003814) #14	hacd3 (ENSCHAG00000004038) #13	ppcdc (ENSCHAG00000004502)	ENSCHAG00000004518	arih1 (ENSCHAG00000004536)	hexa (ENSCHAG00000004565)
Denticle herring	MODERN SPECIES	8	ENSDCDG00000032979	rag1 (ENSDCDG00000032976)	rag2 (ENSDCDG00000032974)	ENSDCDG00000032973	lrrc4ca (ENSDCDG00000032970)	ehf (ENSDCDG00000032967)	pdhx (ENSDCDG00000032954)	ENSDCDG00000032947	slc1a2b (ENSDCDG00000032937)	PAMR1 (ENSDCDG00000032928)	FJX1 (ENSDCDG00000032922)	trim44 (ENSDCDG00000032920)	LDLRAD3 (ENSDCDG00000032916)	ENSDCDG00000032901	gdpgp1 (ENSDCDG00000032893)	map2k1 (ENSDCDG00000032785) #22	rpl4 (ENSDCDG00000032764) #23	zwilch (ENSDCDG00000032759) #24	LCTL (ENSDCDG00000032757) #25	snapc5 (ENSDCDG00000032755)	FBXO31 (ENSDCDG00000032703)	fanci (ENSDCDG00000032690)	POLG (ENSDCDG00000032684)	rhcgb (ENSDCDG00000032660)	hdhd5 (ENSDCDG00000032645)	ccdc77 (ENSDCDG00000032627)	ENSDCDG00000032625	ENSDCDG00000032624	ENSDCDG00000032622	avpr1ab (ENSDCDG00000032619)	ppm1h (ENSDCDG00000032608)