Mus	ANCESTRAL SPECIES	4	ENSGT00390000017392	ENSGT00390000017625 #7	ENSGT00390000008152.B.b #8	ENSGT00950000183129.a #9	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #17	ENSGT00940000155333.B #18	ENSGT00530000063106.B #19	ENSGT00390000005764 #20	ENSGT00940000153487.b.b #22	ENSGT00390000010331 #23	ENSGT00390000018145 #24	ENSGT00390000013696 #25	ENSGT00940000157369 #26	ENSGT00940000158146 #29	ENSGT00940000153499.b.b #31	ENSGT00390000007218 #32	ENSGT00390000008908 #34	ENSGT00390000015942 #35	ENSGT00940000157505 #36	ENSGT00940000158440 #37	ENSGT01030000234539.a.a.b.a.b	ENSGT00940000157859	ENSGT00400000022240	ENSGT00940000161115
Mus_A	ANCESTRAL SPECIES	4	ENSGT00390000017392	ENSGT00390000017625 #7	ENSGT00390000008152.B.b #8	ENSGT00950000183129.a #9	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #17	ENSGT00940000155333.B #18	ENSGT00530000063106.B #19	ENSGT00390000005764 #20	ENSGT00940000153487.b.b #22	ENSGT00390000010331 #23	ENSGT00390000018145 #24	ENSGT00390000013696 #25	ENSGT00940000157369 #26	ENSGT00940000158146 #29	ENSGT00940000153499.b.b #31	ENSGT00390000007218 #32	ENSGT00390000008908 #34	ENSGT00390000015942 #35	ENSGT00940000157505 #36	ENSGT00940000158440 #37	ENSGT01030000234539.a.a.b.a.b	ENSGT00940000157859	ENSGT00400000022240	ENSGT00940000161115
Mus_B	ANCESTRAL SPECIES	3	ENSGT00390000017625 #7	ENSGT00390000008152.B.b #8	ENSGT00950000183129.a #9	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #17	ENSGT00940000155333.B #18	ENSGT00530000063106.B #19	ENSGT00390000005764 #20	ENSGT00940000154925.c.a #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331 #23	ENSGT00390000018145 #24	ENSGT00390000013696 #25	ENSGT00940000157369 #26	ENSGT00940000158146 #29	ENSGT00940000153499.b.b #31	ENSGT00390000007218 #32	ENSGT00390000008908 #34	ENSGT00390000015942 #35	ENSGT00940000157505 #36	ENSGT00940000158440 #37	ENSGT01030000234539.a.a.b.a.b	ENSGT00940000157859.e.b	ENSGT00400000022240	ENSGT00940000161115
Mus_C	ANCESTRAL SPECIES	8	ENSGT00390000017625 #7	ENSGT00390000008152.B.b #8	ENSGT00950000183129.a #9	ENSGT00940000156969 #10	ENSGT00940000159637 #11	ENSGT00940000160717 #12	ENSGT00530000062962.b.a #13	ENSGT00390000009486 #14	ENSGT01030000234532.B.e.b #15	ENSGT00940000155836.B #16	ENSGT00940000154914 #17	ENSGT00940000155333.B #18	ENSGT00530000063106.B #19	ENSGT00390000005764 #20	ENSGT00940000154925.c.a #21	ENSGT00940000153487.b.b #22	ENSGT00390000010331 #23	ENSGT00390000018145 #24	ENSGT00390000013696 #25	ENSGT00940000157369 #26	ENSGT00940000158146 #29	ENSGT00940000153499.b.b #31	ENSGT00390000007218 #32	ENSGT00390000008908 #34	ENSGT00390000015942 #35	ENSGT00940000157505 #36	ENSGT00940000158440 #37	ENSGT01030000234539.a.a.b.a.b	ENSGT00940000157859.e.b	ENSGT00400000022240	ENSGT00940000161115
Steppe mouse	MODERN SPECIES	3365	Clpx (ENSMSIG00000005427) #7	Cilp (ENSMSIG00000005391) #8	Parp16 (ENSMSIG00000005362) #9	Igdcc3 (ENSMSIG00000005288) #10	Igdcc4 (ENSMSIG00000005197) #11	Dpp8 (ENSMSIG00000005153) #12	Hacd3 (ENSMSIG00000005101) #13	Ints14 (ENSMSIG00000005077) #14	Slc24a1 (ENSMSIG00000005039) #15	Dennd4a (ENSMSIG00000004975) #16	Rab11a (ENSMSIG00000004938) #17	Megf11 (ENSMSIG00000004481) #18	Dis3l (ENSMSIG00000004353) #19	Tipin (ENSMSIG00000004296) #20	Uchl4 (ENSMSIG00000004289) #21	Map2k1 (ENSMSIG00000004246) #22	Snapc5 (ENSMSIG00000004231) #23	Rpl4 (ENSMSIG00000004124) #24	Zwilch (ENSMSIG00000003872) #25	Lctl (ENSMSIG00000003776) #26	ENSMSIG00000003769 #27	ENSMSIG00000003749 #28	Smad6 (ENSMSIG00000003718) #29	ENSMSIG00000003710 #30	Smad3 (ENSMSIG00000003679) #31	Aagab (ENSMSIG00000003642) #32	ENSMSIG00000003630 #33	Iqch (ENSMSIG00000002651) #34	2300009A05Rik (ENSMSIG00000002599) #35	Map2k5 (ENSMSIG00000002321) #36	Skor1 (ENSMSIG00000002179) #37
spretus	MODERN SPECIES	18	Clpx (MGP_SPRETEiJ_G0033495) #7	Cilp (MGP_SPRETEiJ_G0033494) #8	Parp16 (MGP_SPRETEiJ_G0033493) #9	Igdcc3 (MGP_SPRETEiJ_G0033492) #10	Igdcc4 (MGP_SPRETEiJ_G0033491) #11	Dpp8 (MGP_SPRETEiJ_G0033490) #12	Hacd3 (MGP_SPRETEiJ_G0033489) #13	Ints14 (MGP_SPRETEiJ_G0033488) #14	Slc24a1 (MGP_SPRETEiJ_G0033487) #15	Dennd4a (MGP_SPRETEiJ_G0033486) #16	Rab11a (MGP_SPRETEiJ_G0033485) #17	Megf11 (MGP_SPRETEiJ_G0033484) #18	Dis3l (MGP_SPRETEiJ_G0033483) #19	Tipin (MGP_SPRETEiJ_G0033482) #20	MGP_SPRETEiJ_G0033481 ##21	Map2k1 (MGP_SPRETEiJ_G0033480) #22	Snapc5 (MGP_SPRETEiJ_G0033479) #23	Rpl4 (MGP_SPRETEiJ_G0033478) #24	Zwilch (MGP_SPRETEiJ_G0033477) #25	Lctl (MGP_SPRETEiJ_G0033476) #26	Smad6 (MGP_SPRETEiJ_G0033475) #29	Smad3 (MGP_SPRETEiJ_G0033474) #31	Aagab (MGP_SPRETEiJ_G0033473) #32	Iqch (MGP_SPRETEiJ_G0033472) #34	2300009A05Rik (MGP_SPRETEiJ_G0033471) #35	Map2k5 (MGP_SPRETEiJ_G0033470) #36	Skor1 (MGP_SPRETEiJ_G0033469) #37	Pias1 (MGP_SPRETEiJ_G0033468)	Calml4 (MGP_SPRETEiJ_G0033467)	MGP_SPRETEiJ_G0033466	Cln6 (MGP_SPRETEiJ_G0033465)
Mouse	MODERN SPECIES	18	Clpx (ENSMUSG00000015357) #7	Cilp (ENSMUSG00000042254) #8	Parp16 (ENSMUSG00000032392) #9	Igdcc3 (ENSMUSG00000032394) #10	Igdcc4 (ENSMUSG00000032816) #11	Dpp8 (ENSMUSG00000032393) #12	Hacd3 (ENSMUSG00000033629) #13	Ints14 (ENSMUSG00000034263) #14	Slc24a1 (ENSMUSG00000034452) #15	Dennd4a (ENSMUSG00000053641) #16	Rab11a (ENSMUSG00000004771) #17	Megf11 (ENSMUSG00000036466) #18	Dis3l (ENSMUSG00000032396) #19	Tipin (ENSMUSG00000032397) #20	Uchl4 (ENSMUSG00000035337) #21	Map2k1 (ENSMUSG00000004936) #22	Snapc5 (ENSMUSG00000032398) #23	Rpl4 (ENSMUSG00000032399) #24	Zwilch (ENSMUSG00000032400) #25	Lctl (ENSMUSG00000032401) #26	Smad6 (ENSMUSG00000036867) #29	Smad3 (ENSMUSG00000032402) #31	Aagab (ENSMUSG00000037257) #32	Iqch (ENSMUSG00000037801) #34	2300009A05Rik (ENSMUSG00000032403) #35	Map2k5 (ENSMUSG00000058444) #36	Skor1 (ENSMUSG00000022245) #37	Pias1 (ENSMUSG00000032405)	Calml4 (ENSMUSG00000032246)	Cln6 (ENSMUSG00000032245)	Fem1b (ENSMUSG00000032244)
Ryukyu mouse	MODERN SPECIES	18	Clpx (MGP_CAROLIEiJ_G0032356) #7	MGP_CAROLIEiJ_G0032355	Parp16 (MGP_CAROLIEiJ_G0032354) #9	Igdcc3 (MGP_CAROLIEiJ_G0032353) #10	Igdcc4 (MGP_CAROLIEiJ_G0032352) #11	Dpp8 (MGP_CAROLIEiJ_G0032351) #12	Hacd3 (MGP_CAROLIEiJ_G0032350) #13	Ints14 (MGP_CAROLIEiJ_G0032349) #14	Slc24a1 (MGP_CAROLIEiJ_G0032348) #15	Dennd4a (MGP_CAROLIEiJ_G0032347) #16	Rab11a (MGP_CAROLIEiJ_G0032346) #17	Megf11 (MGP_CAROLIEiJ_G0032345) #18	Dis3l (MGP_CAROLIEiJ_G0032344) #19	Tipin (MGP_CAROLIEiJ_G0032343) #20	MGP_CAROLIEiJ_G0032342 ##21	Map2k1 (MGP_CAROLIEiJ_G0032341) #22	Snapc5 (MGP_CAROLIEiJ_G0032340) #23	Rpl4 (MGP_CAROLIEiJ_G0032339) #24	Zwilch (MGP_CAROLIEiJ_G0032338) #25	Lctl (MGP_CAROLIEiJ_G0032337) #26	Smad6 (MGP_CAROLIEiJ_G0032336) #29	Smad3 (MGP_CAROLIEiJ_G0032335) #31	Aagab (MGP_CAROLIEiJ_G0032334) #32	Iqch (MGP_CAROLIEiJ_G0032333) #34	2300009A05Rik (MGP_CAROLIEiJ_G0032332) #35	Map2k5 (MGP_CAROLIEiJ_G0032331) #36	Skor1 (MGP_CAROLIEiJ_G0032330) #37	Pias1 (MGP_CAROLIEiJ_G0032329)	Calml4 (MGP_CAROLIEiJ_G0032328)	Cln6 (MGP_CAROLIEiJ_G0032327)	Fem1b (MGP_CAROLIEiJ_G0032326)
Shrew mouse	MODERN SPECIES	1	Pdcd7 (MGP_PahariEiJ_G0015222)	Clpx (MGP_PahariEiJ_G0015221) #7	MGP_PahariEiJ_G0015220	Parp16 (MGP_PahariEiJ_G0015219) #9	MGP_PahariEiJ_G0015218 #10	Igdcc4 (MGP_PahariEiJ_G0015217) #11	Dpp8 (MGP_PahariEiJ_G0015216) #12	Hacd3 (MGP_PahariEiJ_G0015215) #13	Ints14 (MGP_PahariEiJ_G0015214) #14	Slc24a1 (MGP_PahariEiJ_G0015213) #15	Dennd4a (MGP_PahariEiJ_G0015212) #16	Rab11a (MGP_PahariEiJ_G0015211) #17	Megf11 (MGP_PahariEiJ_G0015210) #18	Dis3l (MGP_PahariEiJ_G0015209) #19	Tipin (MGP_PahariEiJ_G0015208) #20	Map2k1 (MGP_PahariEiJ_G0015207) #22	Snapc5 (MGP_PahariEiJ_G0015206) #23	Rpl4 (MGP_PahariEiJ_G0015205) #24	Zwilch (MGP_PahariEiJ_G0015204) #25	Smad6 (MGP_PahariEiJ_G0015202) #29	Smad3 (MGP_PahariEiJ_G0015201) #31	Aagab (MGP_PahariEiJ_G0015200) #32	Iqch (MGP_PahariEiJ_G0015199) #34	2300009A05Rik (MGP_PahariEiJ_G0015198) #35	Map2k5 (MGP_PahariEiJ_G0015197) #36	Skor1 (MGP_PahariEiJ_G0015196) #37	Pias1 (MGP_PahariEiJ_G0015195)	Calml4 (MGP_PahariEiJ_G0015194)	MGP_PahariEiJ_G0015193	Fem1b (MGP_PahariEiJ_G0015192)	Itga11 (MGP_PahariEiJ_G0015191)