Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000153487.b.a #22
Gnathostomata	ANCESTRAL SPECIES	301											ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT01030000234534.B.a.a.a.a	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000157006	ENSGT01030000234542.b.b.a.b
Euteleostomi	ANCESTRAL SPECIES	104	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00990000205656	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT01030000234534.B.a.a.a.a	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT01030000234539.a.a.b.b ##24	ENSGT00940000157006	ENSGT01030000234542.b.b.a.a.b	ENSGT00390000002049.d	ENSGT00940000156893	ENSGT00390000018360	ENSGT00390000011497	ENSGT00950000183094.a	ENSGT00940000159348	ENSGT00940000161136
Sarcopterygii	ANCESTRAL SPECIES	104	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00990000205656	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT01030000234534.B.a.a.a.a	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT00940000166634	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT01030000234539.a.a.b.b ##24	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00950000182938.b.b.b.b.b.a	ENSGT00940000163917.b	ENSGT00390000018044.b.b	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35
Tetrapoda	ANCESTRAL SPECIES	80	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00990000205656	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT01030000234534.B.a.a.a.a	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT01030000234539.a.a.b.b ##24	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00950000182938.b.b.b.b.b.a	ENSGT00940000163917.b	ENSGT00390000018044.b.b	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.B ##36
Amniota	ANCESTRAL SPECIES	23	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00990000205656	ENSGT00940000159237 #19	ENSGT01000000215054	ENSGT00940000160088 #20	ENSGT01030000234534.B.a.a.a.a	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000154779.a.a	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00950000182938.b.b.b.b.b.a	ENSGT00940000163917.b	ENSGT00390000018044.b.b	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34
Mammalia	ANCESTRAL SPECIES	61	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT01000000215054	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163917.b	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.B ##36	ENSGT01030000234559.a.a.a #37
Theria	ANCESTRAL SPECIES	41	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT01000000215054	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163917.b	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.B ##36	ENSGT01030000234559.a.a.a #37
Eutheria	ANCESTRAL SPECIES	24	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT01000000215054	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT00520000060565
Boreoeutheria	ANCESTRAL SPECIES	18	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT01000000215054	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT00520000060565
Euarchontoglires	ANCESTRAL SPECIES	18	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT01000000215054	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37
Primates	ANCESTRAL SPECIES	18	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b.d #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37
Strepsirrhini	ANCESTRAL SPECIES	26	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b.d #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37
Lemuriformes	ANCESTRAL SPECIES	22	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b.d #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37
Mouse lemur	MODERN SPECIES	16	PLIN4 (ENSMICG00000028930) #7	HDGFL2 (ENSMICG00000000325) #8	UBXN6 (ENSMICG00000033666) #9	CHAF1A (ENSMICG00000000323) #10	SH3GL1 (ENSMICG00000000322) #11	MPND (ENSMICG00000038621) #12	STAP2 (ENSMICG00000028853) #13	FSD1 (ENSMICG00000000316) #14	TMIGD2 (ENSMICG00000045375) #15	SHD (ENSMICG00000000315) #16	YJU2 (ENSMICG00000030928) #17	EBI3 (ENSMICG00000042883) #18	ANKRD24 (ENSMICG00000001612) #19	SIRT6 (ENSMICG00000003439) #20	CREB3L3 (ENSMICG00000034622) #21	MAP2K2 (ENSMICG00000028081) #22	ZBTB7A (ENSMICG00000030503) #23	PIAS4 (ENSMICG00000012799) #24	EEF2 (ENSMICG00000012772) #25	DAPK3 (ENSMICG00000046071) #26	NMRK2 (ENSMICG00000037967) #27	ATCAY (ENSMICG00000004504) #28	ZFR2 (ENSMICG00000045224) #29	MATK (ENSMICG00000014774) #30	RAX2 (ENSMICG00000014768) #31	MRPL54 (ENSMICG00000034581) #32	APBA3 (ENSMICG00000014756) #33	TJP3 (ENSMICG00000014731) #34	PIP5K1C (ENSMICG00000028246) #35	CACTIN (ENSMICG00000008291) #36	TBXA2R (ENSMICG00000031426) #37
Lemuriformes_a	ANCESTRAL SPECIES	17	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b.d #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37
Coquerels sifaka	MODERN SPECIES	348	ENSPCOG00000021711 #7	HDGFL2 (ENSPCOG00000009336) #8	UBXN6 (ENSPCOG00000027732) #9	CHAF1A (ENSPCOG00000024961) #10	SH3GL1 (ENSPCOG00000025140) #11	MPND (ENSPCOG00000014436) #12	STAP2 (ENSPCOG00000021854) #13	FSD1 (ENSPCOG00000023842) #14	TMIGD2 (ENSPCOG00000022704) #15	SHD (ENSPCOG00000023655) #16	YJU2 (ENSPCOG00000017988) #17	EBI3 (ENSPCOG00000022898) #18	ANKRD24 (ENSPCOG00000012089) #19	SIRT6 (ENSPCOG00000028709) #20	CREB3L3 (ENSPCOG00000017862) #21	MAP2K2 (ENSPCOG00000004497) #22	ZBTB7A (ENSPCOG00000027776) #23	PIAS4 (ENSPCOG00000004662) #24	EEF2 (ENSPCOG00000023522) #25	DAPK3 (ENSPCOG00000023275) #26	NMRK2 (ENSPCOG00000022831) #27	ATCAY (ENSPCOG00000027482) #28	ZFR2 (ENSPCOG00000016923) #29	MATK (ENSPCOG00000018010) #30	RAX2 (ENSPCOG00000022891) #31	MRPL54 (ENSPCOG00000027550) #32	APBA3 (ENSPCOG00000026721) #33	TJP3 (ENSPCOG00000020238) #34	PIP5K1C (ENSPCOG00000021588) #35	CACTIN (ENSPCOG00000015989) #36	TBXA2R (ENSPCOG00000015698) #37
Greater bamboo lemur	MODERN SPECIES	916	HDGFL2 (ENSPSMG00000019994) #8	UBXN6 (ENSPSMG00000019891) #9	CHAF1A (ENSPSMG00000019830) #10	SH3GL1 (ENSPSMG00000019735) #11	MPND (ENSPSMG00000019676) #12	STAP2 (ENSPSMG00000019657) #13	FSD1 (ENSPSMG00000019636) #14	ENSPSMG00000019578	SHD (ENSPSMG00000019570) #16	ENSPSMG00000019546 #16	YJU2 (ENSPSMG00000019539) #17	EBI3 (ENSPSMG00000019525) #18	ANKRD24 (ENSPSMG00000019514) #19	SIRT6 (ENSPSMG00000019501) #20	CREB3L3 (ENSPSMG00000019448) #21	MAP2K2 (ENSPSMG00000019412) #22	ZBTB7A (ENSPSMG00000019360) #23	PIAS4 (ENSPSMG00000019356) #24	EEF2 (ENSPSMG00000019307) #25	DAPK3 (ENSPSMG00000019258) #26	NMRK2 (ENSPSMG00000019248) #27	ATCAY (ENSPSMG00000019230) #28	ZFR2 (ENSPSMG00000019220) #29	MATK (ENSPSMG00000019201) #30	RAX2 (ENSPSMG00000019159) #31	MRPL54 (ENSPSMG00000019157) #32	APBA3 (ENSPSMG00000019152) #33	TJP3 (ENSPSMG00000019146) #34	PIP5K1C (ENSPSMG00000019141) #35	CACTIN (ENSPSMG00000019114) #36	TBXA2R (ENSPSMG00000019078) #37
Bushbaby	MODERN SPECIES	144	ENSOGAG00000025449 #7	HDGFL2 (ENSOGAG00000007380) #8	ENSOGAG00000002199 #9	CHAF1A (ENSOGAG00000002196) #10	SH3GL1 (ENSOGAG00000002193) #11	MPND (ENSOGAG00000014780) #12	STAP2 (ENSOGAG00000001668) #13	FSD1 (ENSOGAG00000001666) #14	TMIGD2 (ENSOGAG00000001665) #15	SHD (ENSOGAG00000001664) #16	ENSOGAG00000001662 #17	EBI3 (ENSOGAG00000001661) #18	ANKRD24 (ENSOGAG00000024109) #19	SIRT6 (ENSOGAG00000001660) #20	CREB3L3 (ENSOGAG00000001659) #21	MAP2K2 (ENSOGAG00000001658) #22	ZBTB7A (ENSOGAG00000033963) #23	PIAS4 (ENSOGAG00000001656) #24	EEF2 (ENSOGAG00000010298) #25	DAPK3 (ENSOGAG00000010293) #26	NMRK2 (ENSOGAG00000017158) #27	ATCAY (ENSOGAG00000017156) #28	ZFR2 (ENSOGAG00000017150) #29	MATK (ENSOGAG00000004396) #30	RAX2 (ENSOGAG00000010138) #31	ENSOGAG00000033519 #32	APBA3 (ENSOGAG00000017147) #33	TJP3 (ENSOGAG00000017146) #34	PIP5K1C (ENSOGAG00000010393) #35	CACTIN (ENSOGAG00000010382) #36	TBXA2R (ENSOGAG00000026948) #37
Haplorrhini	ANCESTRAL SPECIES	14	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b.d #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37
Tarsier	MODERN SPECIES	2381																MAP2K2 (ENSTSYG00000028430) #22
Simiiformes	ANCESTRAL SPECIES	13	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b.d #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37
Platyrrhini	DUPLICATION
Platyrrhini	ANCESTRAL SPECIES	16	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b.d #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a.c #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37
Cebidae	ANCESTRAL SPECIES	20	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b.d #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a.c #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37
Marmoset	MODERN SPECIES	14	PLIN5 (ENSCJAG00000017538) ##7	PLIN4 (ENSCJAG00000086686) #7	HDGFL2 (ENSCJAG00000017556) #8	UBXN6 (ENSCJAG00000007418) #9	CHAF1A (ENSCJAG00000007402) #10	SH3GL1 (ENSCJAG00000007394) #11	MPND (ENSCJAG00000007387) #12	STAP2 (ENSCJAG00000003656) #13	FSD1 (ENSCJAG00000014650) #14	SHD (ENSCJAG00000008444) #16	YJU2 (ENSCJAG00000038170) #17	EBI3 (ENSCJAG00000013202) #18	ANKRD24 (ENSCJAG00000015134) #19	SIRT6 (ENSCJAG00000015120) #20	CREB3L3 (ENSCJAG00000015105) #21	MAP2K2 (ENSCJAG00000015084) #22	ZBTB7A (ENSCJAG00000036210) #23	PIAS4 (ENSCJAG00000015065) #24	EEF2 (ENSCJAG00000015045) #25	DAPK3 (ENSCJAG00000015041) #26	NMRK2 (ENSCJAG00000015033) #27	ATCAY (ENSCJAG00000015022) #28	ENSCJAG00000045089	MATK (ENSCJAG00000015004) #30	ENSCJAG00000079224	RAX2 (ENSCJAG00000015003) #31	MRPL54 (ENSCJAG00000014998) #32	APBA3 (ENSCJAG00000014981) #33	TJP3 (ENSCJAG00000014958) #34	PIP5K1C (ENSCJAG00000014951) #35	CACTIN (ENSCJAG00000014929) #36
Cebidae_a	ANCESTRAL SPECIES	9	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b.d #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a.c #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37
Capuchin	MODERN SPECIES	375											YJU2 (ENSCCAG00000015752) #17	EBI3 (ENSCCAG00000016244) #18	ANKRD24 (ENSCCAG00000019424) #19	SIRT6 (ENSCCAG00000021654) #20	CREB3L3 (ENSCCAG00000009229) #21	ENSCCAG00000020186 #22	ZBTB7A (ENSCCAG00000031015) #23	PIAS4 (ENSCCAG00000031276) #24	EEF2 (ENSCCAG00000034379) #25	DAPK3 (ENSCCAG00000036778) #26	NMRK2 (ENSCCAG00000027666) #27	ATCAY (ENSCCAG00000030577) #28	ZFR2 (ENSCCAG00000025541) #29	MATK (ENSCCAG00000027658) #30	RAX2 (ENSCCAG00000027035) #31	MRPL54 (ENSCCAG00000000138) #32	APBA3 (ENSCCAG00000033704) #33	TJP3 (ENSCCAG00000020120) #34	PIP5K1C (ENSCCAG00000019560) #35	CACTIN (ENSCCAG00000028723) #36	TBXA2R (ENSCCAG00000028722) #37
Bolivian squirrel monkey	MODERN SPECIES	150	PLIN4 (ENSSBOG00000020299) #7	HDGFL2 (ENSSBOG00000000080) #8	UBXN6 (ENSSBOG00000032557) #9	CHAF1A (ENSSBOG00000027727) #10	SH3GL1 (ENSSBOG00000019572) #11	MPND (ENSSBOG00000027720) #12	STAP2 (ENSSBOG00000025131) #13	FSD1 (ENSSBOG00000023601) #14	TMIGD2 (ENSSBOG00000035295) #15	SHD (ENSSBOG00000022737) #16	YJU2 (ENSSBOG00000023748) #17	EBI3 (ENSSBOG00000024178) #18	ANKRD24 (ENSSBOG00000029618) #19	SIRT6 (ENSSBOG00000029532) #20	CREB3L3 (ENSSBOG00000022378) #21	MAP2K2 (ENSSBOG00000033682) #22	ZBTB7A (ENSSBOG00000015331) #23	PIAS4 (ENSSBOG00000028685) #24	ENSSBOG00000006731 #25	DAPK3 (ENSSBOG00000032686) #26	NMRK2 (ENSSBOG00000016720) #27	ATCAY (ENSSBOG00000031021) #28	MATK (ENSSBOG00000030884) #30	MRPL54 (ENSSBOG00000028081) #32	APBA3 (ENSSBOG00000030975) #33	TJP3 (ENSSBOG00000035488) #34	PIP5K1C (ENSSBOG00000027787) #35	CACTIN (ENSSBOG00000034076) #36	GIPC3 (ENSSBOG00000021391)	HMG20B (ENSSBOG00000034086)	MFSD12 (ENSSBOG00000022502)
Mas night monkey	MODERN SPECIES	937	PLIN4 (ENSANAG00000034697) #7	HDGFL2 (ENSANAG00000032673) #8	UBXN6 (ENSANAG00000032835) #9	CHAF1A (ENSANAG00000025401) #10	SH3GL1 (ENSANAG00000035579) #11	MPND (ENSANAG00000020972) #12	STAP2 (ENSANAG00000036194) #13	FSD1 (ENSANAG00000027398) #14	ENSANAG00000022976	SHD (ENSANAG00000034629) #16	YJU2 (ENSANAG00000034742) #17	EBI3 (ENSANAG00000024033) #18	ANKRD24 (ENSANAG00000036761) #19	SIRT6 (ENSANAG00000037174) #20	CREB3L3 (ENSANAG00000029114) #21	MAP2K2 (ENSANAG00000036150) #22	ZBTB7A (ENSANAG00000022927) #23	PIAS4 (ENSANAG00000023065) #24	EEF2 (ENSANAG00000037323) #25	DAPK3 (ENSANAG00000029830) #26	ENSANAG00000037878 #27	ATCAY (ENSANAG00000029633) #28	ZFR2 (ENSANAG00000028699) #29	MATK (ENSANAG00000036207) #30	RAX2 (ENSANAG00000029699) #31	MRPL54 (ENSANAG00000028692) #32	APBA3 (ENSANAG00000034636) #33	TJP3 (ENSANAG00000028837) #34	PIP5K1C (ENSANAG00000036860) #35	CACTIN (ENSANAG00000034680) #36	TBXA2R (ENSANAG00000009361) #37
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00940000153487.b.a.d #22
Cebidae	ANCESTRAL SPECIES																	ENSGT00940000153487.b.a.d #22
Cebidae_a	ANCESTRAL SPECIES																	ENSGT00940000153487.b.a.d #22
Capuchin	MODERN SPECIES	30	TM4SF1 (ENSCCAG00000033032)	TM4SF4 (ENSCCAG00000028225)	WWTR1 (ENSCCAG00000033257)	COMMD2 (ENSCCAG00000030153)	ENSCCAG00000024462	ANKUB1 (ENSCCAG00000032570)	ENSCCAG00000020698	SLC38A5 (ENSCCAG00000032976)	FTSJ1 (ENSCCAG00000027731)	PORCN (ENSCCAG00000035069)	EBP (ENSCCAG00000027079)	TBC1D25 (ENSCCAG00000033507)	RBM3 (ENSCCAG00000038019)	WDR13 (ENSCCAG00000038091)	WAS (ENSCCAG00000036792)	ENSCCAG00000001345 #22	SUV39H1 (ENSCCAG00000004739)	GLOD5 (ENSCCAG00000033598)	GATA1 (ENSCCAG00000032671)	ENSCCAG00000037521	PCSK1N (ENSCCAG00000032016)	TIMM17B (ENSCCAG00000030275)	PQBP1 (ENSCCAG00000034951) ##36	SLC35A2 (ENSCCAG00000025257)	PIM2 (ENSCCAG00000024329)	OTUD5 (ENSCCAG00000033387)	KCND1 (ENSCCAG00000037150)	GRIPAP1 (ENSCCAG00000003776)
Catarrhini	ANCESTRAL SPECIES		ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c.a #11	ENSGT00940000160191 #12	ENSGT00530000063841.b.d #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT00910000147341	ENSGT00390000017269	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00910000147218	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34
Cercopithecidae	ANCESTRAL SPECIES	17	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c.a #11	ENSGT00940000160191 #12	ENSGT00530000063841.b.d #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT00910000147341	ENSGT00390000017269	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00910000147218	ENSGT00940000158364 #28	ENSGT00910000147666	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33
Cercopithecinae	ANCESTRAL SPECIES	1	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c.a #11	ENSGT00940000160191 #12	ENSGT00530000063841.b.d #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT00910000147341	ENSGT00390000017269	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662.gb.a #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00910000147218	ENSGT00940000158364 #28	ENSGT00910000147666	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33
Vervet Monkey	MODERN SPECIES	25	PLIN4 (ENSCSAG00000010532) #7	HDGFL2 (ENSCSAG00000010539) #8	UBXN6 (ENSCSAG00000010549) #9	CHAF1A (ENSCSAG00000010557) #10	SH3GL1 (ENSCSAG00000010564) #11	MPND (ENSCSAG00000010574) #12	STAP2 (ENSCSAG00000010602) #13	FSD1 (ENSCSAG00000010620) #14	TMIGD2 (ENSCSAG00000010627) #15	SHD (ENSCSAG00000010649) #16	YJU2 (ENSCSAG00000010670) #17	EBI3 (ENSCSAG00000010684) #18	ANKRD24 (ENSCSAG00000010711) #19	SIRT6 (ENSCSAG00000010757) #20	CREB3L3 (ENSCSAG00000010762) #21	MAP2K2 (ENSCSAG00000010771) #22	ZBTB7A (ENSCSAG00000010775) #23	ENSCSAG00000018816	PIAS4 (ENSCSAG00000010838) #24	EEF2 (ENSCSAG00000010865) #25	DAPK3 (ENSCSAG00000010873) #26	NMRK2 (ENSCSAG00000010882) #27	ATCAY (ENSCSAG00000010889) #28	ZFR2 (ENSCSAG00000010914) #29	MATK (ENSCSAG00000010938) #30	RAX2 (ENSCSAG00000010944) #31	MRPL54 (ENSCSAG00000010950) #32	APBA3 (ENSCSAG00000010973) #33	TJP3 (ENSCSAG00000011066) #34	PIP5K1C (ENSCSAG00000011108) #35	CACTIN (ENSCSAG00000011116) #36
Cercopithecinae_a	ANCESTRAL SPECIES	3	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c.a #11	ENSGT00940000160191 #12	ENSGT00530000063841.b.d #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT00910000147341	ENSGT00390000017269	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662.gb.a #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00910000147218	ENSGT00940000158364 #28	ENSGT00910000147666	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33
Macaca	ANCESTRAL SPECIES	24	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c.a #11	ENSGT00940000160191 #12	ENSGT00530000063841.b.d #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662.gb.a #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00910000147218	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36
Pig-tailed macaque	MODERN SPECIES	76	PLIN5 (ENSMNEG00000033253) ##7	HDGFL2 (ENSMNEG00000034980) #8	UBXN6 (ENSMNEG00000030532) #9	CHAF1A (ENSMNEG00000039177) #10	SH3GL1 (ENSMNEG00000003775) #11	MPND (ENSMNEG00000014406) #12	STAP2 (ENSMNEG00000033310) #13	FSD1 (ENSMNEG00000026815) #14	TMIGD2 (ENSMNEG00000041785) #15	SHD (ENSMNEG00000032816) #16	YJU2 (ENSMNEG00000036028) #17	EBI3 (ENSMNEG00000044798) #18	ANKRD24 (ENSMNEG00000044905) #19	SIRT6 (ENSMNEG00000029466) #20	CREB3L3 (ENSMNEG00000039631) #21	MAP2K2 (ENSMNEG00000044105) #22	ZBTB7A (ENSMNEG00000033804) #23	PIAS4 (ENSMNEG00000030027) #24	EEF2 (ENSMNEG00000021403) #25	DAPK3 (ENSMNEG00000034480) #26	NMRK2 (ENSMNEG00000033367) #27	ENSMNEG00000018044	ENSMNEG00000016763	ATCAY (ENSMNEG00000027990) #28	ZFR2 (ENSMNEG00000043770) #29	MATK (ENSMNEG00000042873) #30	RAX2 (ENSMNEG00000034075) #31	MRPL54 (ENSMNEG00000039499) #32	APBA3 (ENSMNEG00000028714) #33	TJP3 (ENSMNEG00000029063) #34	PIP5K1C (ENSMNEG00000023721) #35
Macaca_a	ANCESTRAL SPECIES	1	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c.a #11	ENSGT00940000160191 #12	ENSGT00530000063841.b.d #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000164709.a.b.b.a.a.b.b.b.b.a.b.a.d.a.a.a.a	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662.gb.a #25	ENSGT00940000159842 #27	ENSGT00910000147218	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37
Rhesus	MODERN SPECIES	10	HDGFL2 (ENSMMUG00000028925) #8	UBXN6 (ENSMMUG00000016709) #9	CHAF1A (ENSMMUG00000016706) #10	SH3GL1 (ENSMMUG00000000273) #11	MPND (ENSMMUG00000028926) #12	ENSMMUG00000059812	STAP2 (ENSMMUG00000000271) #13	FSD1 (ENSMMUG00000000268) #14	TMIGD2 (ENSMMUG00000045860) #15	SHD (ENSMMUG00000028927) #16	YJU2 (ENSMMUG00000010100) #17	ANKRD24 (ENSMMUG00000028928) #19	SIRT6 (ENSMMUG00000019955) #20	CREB3L3 (ENSMMUG00000019954) #21	ENSMMUG00000063002	MAP2K2 (ENSMMUG00000019564) #22	ZBTB7A (ENSMMUG00000063320) #23	PIAS4 (ENSMMUG00000011018) #24	EEF2 (ENSMMUG00000022767) #25	ENSMMUG00000065079	DAPK3 (ENSMMUG00000022765)	NMRK2 (ENSMMUG00000015273) #27	ENSMMUG00000056147	ENSMMUG00000064233	ATCAY (ENSMMUG00000039195) #28	ZFR2 (ENSMMUG00000054579) #29	MATK (ENSMMUG00000001917) #30	RAX2 (ENSMMUG00000056802) #31	MRPL54 (ENSMMUG00000044080) #32	APBA3 (ENSMMUG00000009672) #33	TJP3 (ENSMMUG00000028930) #34
Crab-eating macaque	MODERN SPECIES	10	PLIN5 (ENSMFAG00000000248) ##7	PLIN4 (ENSMFAG00000000239) #7	HDGFL2 (ENSMFAG00000000309) #8	SH3GL1 (ENSMFAG00000044037) #11	MPND (ENSMFAG00000033303) #12	STAP2 (ENSMFAG00000030521) #13	FSD1 (ENSMFAG00000041951) #14	SHD (ENSMFAG00000033388) #16	YJU2 (ENSMFAG00000059349) #17	TMIGD2 (ENSMFAG00000031969) #15	EBI3 (ENSMFAG00000038770) #18	ANKRD24 (ENSMFAG00000038641) #19	SIRT6 (ENSMFAG00000001546) #20	CREB3L3 (ENSMFAG00000040065) #21	ENSMFAG00000053986	MAP2K2 (ENSMFAG00000039192) #22	PIAS4 (ENSMFAG00000046119) #24	NMRK2 (ENSMFAG00000033332) #27	ENSMFAG00000028991	ENSMFAG00000052942	ENSMFAG00000040276 #25	ATCAY (ENSMFAG00000002982) #28	ZFR2 (ENSMFAG00000031215) #29	RAX2 (ENSMFAG00000065615) #31	MATK (ENSMFAG00000030470) #30	MRPL54 (ENSMFAG00000003311) #32	APBA3 (ENSMFAG00000044015) #33	MFSD12 (ENSMFAG00000039649)	TEKTIP1 (ENSMFAG00000036699)	FZR1 (ENSMFAG00000003458)	SMIM24 (ENSMFAG00000037612)
Cercopithecinae_b	ANCESTRAL SPECIES	13	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c.a #11	ENSGT00940000160191 #12	ENSGT00530000063841.b.d #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT00910000147341	ENSGT00390000017269	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662.gb.a #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00910000147218	ENSGT00940000158364 #28	ENSGT00910000147666	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33
Olive baboon	MODERN SPECIES	12	SEMA6B (ENSPANG00000014342)	LRG1 (ENSPANG00000038034)	PLIN5 (ENSPANG00000019798) ##7	PLIN4 (ENSPANG00000018994) #7	ENSPANG00000041390 #8	UBXN6 (ENSPANG00000014343) #9	SH3GL1 (ENSPANG00000030582) #11	MPND (ENSPANG00000008881) #12	FSD1 (ENSPANG00000019255) #14	TMIGD2 (ENSPANG00000019801) #15	YJU2 (ENSPANG00000009046) #17	EBI3 (ENSPANG00000011050) #18	ANKRD24 (ENSPANG00000007947) #19	SIRT6 (ENSPANG00000004922) #20	CREB3L3 (ENSPANG00000003567) #21	MAP2K2 (ENSPANG00000008882) #22	ZBTB7A (ENSPANG00000010574) #23	PIAS4 (ENSPANG00000003087) #24	EEF2 (ENSPANG00000007589) #25	NMRK2 (ENSPANG00000013229) #27	ATCAY (ENSPANG00000000280) #28	ZFR2 (ENSPANG00000003088) #29	MATK (ENSPANG00000017163) #30	RAX2 (ENSPANG00000013783) #31	MRPL54 (ENSPANG00000033944) #32	APBA3 (ENSPANG00000003568) #33	TJP3 (ENSPANG00000013784) #34	NFIC (ENSPANG00000004923)	SMIM44 (ENSPANG00000029842)	DOHH (ENSPANG00000032446)	FZR1 (ENSPANG00000004724)
Cercopithecinae_d	ANCESTRAL SPECIES	22	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c.a #11	ENSGT00940000160191 #12	ENSGT00530000063841.b.d #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT00910000147341	ENSGT00390000017269	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662.gb.a #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00910000147218	ENSGT00940000158364 #28	ENSGT00910000147666	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33
Sooty mangabey	MODERN SPECIES	177	PLIN4 (ENSCATG00000032467) #7	HDGFL2 (ENSCATG00000040769) #8	UBXN6 (ENSCATG00000039313) #9	CHAF1A (ENSCATG00000037940) #10	SH3GL1 (ENSCATG00000038128) #11	MPND (ENSCATG00000004001) #12	STAP2 (ENSCATG00000036308) #13	FSD1 (ENSCATG00000016062) #14	TMIGD2 (ENSCATG00000031952) #15	SHD (ENSCATG00000036509) #16	YJU2 (ENSCATG00000041597) #17	EBI3 (ENSCATG00000037867) #18	ANKRD24 (ENSCATG00000044887) #19	SIRT6 (ENSCATG00000039436) #20	CREB3L3 (ENSCATG00000040399) #21	MAP2K2 (ENSCATG00000030991) #22	ZBTB7A (ENSCATG00000042184) #23	ENSCATG00000041220	PIAS4 (ENSCATG00000038579) #24	ENSCATG00000039972 #25	DAPK3 (ENSCATG00000041841) #26	NMRK2 (ENSCATG00000039387) #27	ENSCATG00000034164	ATCAY (ENSCATG00000038400) #28	ENSCATG00000024725	ZFR2 (ENSCATG00000028559) #29	MATK (ENSCATG00000037452) #30	RAX2 (ENSCATG00000038515) #31	MRPL54 (ENSCATG00000014066) #32	APBA3 (ENSCATG00000040664) #33	TJP3 (ENSCATG00000038428) #34
Drill	MODERN SPECIES	1534	PLIN5 (ENSMLEG00000033803) ##7	PLIN4 (ENSMLEG00000037632) #7	HDGFL2 (ENSMLEG00000040813) #8	UBXN6 (ENSMLEG00000038954) #9	CHAF1A (ENSMLEG00000037211) #10	SH3GL1 (ENSMLEG00000024076) #11	MPND (ENSMLEG00000035802) #12	STAP2 (ENSMLEG00000028740) #13	FSD1 (ENSMLEG00000039314) #14	ENSMLEG00000013785	YJU2 (ENSMLEG00000017413) #17	EBI3 (ENSMLEG00000032602) #18	ANKRD24 (ENSMLEG00000022250) #19	SIRT6 (ENSMLEG00000031246) #20	CREB3L3 (ENSMLEG00000026233) #21	MAP2K2 (ENSMLEG00000031781) #22	ZBTB7A (ENSMLEG00000044096) #23	ENSMLEG00000027287	ENSMLEG00000035883	PIAS4 (ENSMLEG00000036604) #24	EEF2 (ENSMLEG00000031184) #25	DAPK3 (ENSMLEG00000028735) #26	NMRK2 (ENSMLEG00000040462) #27	ENSMLEG00000015044	ATCAY (ENSMLEG00000036887) #28	ENSMLEG00000044258	ZFR2 (ENSMLEG00000004713) #29	MATK (ENSMLEG00000030543) #30	RAX2 (ENSMLEG00000032619) #31	ENSMLEG00000039241 #32	APBA3 (ENSMLEG00000038059) #33
Rhinopithecus	ANCESTRAL SPECIES	5	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c.a #11	ENSGT00940000160191 #12	ENSGT00530000063841.b.d #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT00390000017269	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00910000147666	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35
Golden snub-nosed monkey	MODERN SPECIES	1318	PLIN4 (ENSRROG00000041408) #7	HDGFL2 (ENSRROG00000037992) #8	UBXN6 (ENSRROG00000030534) #9	CHAF1A (ENSRROG00000029710) #10	SH3GL1 (ENSRROG00000040183) #11	MPND (ENSRROG00000029655) #12	STAP2 (ENSRROG00000031412) #13	FSD1 (ENSRROG00000042651) #14	TMIGD2 (ENSRROG00000039740) #15	SHD (ENSRROG00000016590) #16	YJU2 (ENSRROG00000020167) #17	EBI3 (ENSRROG00000032150) #18	ANKRD24 (ENSRROG00000024500) #19	SIRT6 (ENSRROG00000000693) #20	CREB3L3 (ENSRROG00000044737) #21	MAP2K2 (ENSRROG00000031471) #22	ZBTB7A (ENSRROG00000026824) #23	ENSRROG00000031290	PIAS4 (ENSRROG00000032682) #24	EEF2 (ENSRROG00000019319) #25	DAPK3 (ENSRROG00000045681) #26	NMRK2 (ENSRROG00000044574) #27	ATCAY (ENSRROG00000042086) #28	ZFR2 (ENSRROG00000039340) #29	ENSRROG00000031786	MATK (ENSRROG00000038991) #30	RAX2 (ENSRROG00000029798) #31	MRPL54 (ENSRROG00000018776) #32	APBA3 (ENSRROG00000033516) #33	TJP3 (ENSRROG00000024434) #34	PIP5K1C (ENSRROG00000032134) #35
Black snub-nosed monkey	MODERN SPECIES	1317	PLIN4 (ENSRBIG00000040411) #7	HDGFL2 (ENSRBIG00000028930) #8	UBXN6 (ENSRBIG00000029192) #9	CHAF1A (ENSRBIG00000016297) #10	SH3GL1 (ENSRBIG00000034946) #11	MPND (ENSRBIG00000038275) #12	STAP2 (ENSRBIG00000043595) #13	FSD1 (ENSRBIG00000037917) #14	TMIGD2 (ENSRBIG00000042843) #15	SHD (ENSRBIG00000041984) #16	YJU2 (ENSRBIG00000038718) #17	EBI3 (ENSRBIG00000036125) #18	ENSRBIG00000029412	SIRT6 (ENSRBIG00000029575) #20	CREB3L3 (ENSRBIG00000043806) #21	MAP2K2 (ENSRBIG00000029645) #22	ZBTB7A (ENSRBIG00000032186) #23	ENSRBIG00000034476	PIAS4 (ENSRBIG00000042254) #24	EEF2 (ENSRBIG00000044754) #25	DAPK3 (ENSRBIG00000042224) #26	NMRK2 (ENSRBIG00000042328) #27	ATCAY (ENSRBIG00000039841) #28	ENSRBIG00000044760	ZFR2 (ENSRBIG00000038095) #29	MATK (ENSRBIG00000002775) #30	RAX2 (ENSRBIG00000038716) #31	MRPL54 (ENSRBIG00000027038) #32	APBA3 (ENSRBIG00000033828) #33	TJP3 (ENSRBIG00000031586) #34	PIP5K1C (ENSRBIG00000044337) #35
Hominoidea	ANCESTRAL SPECIES		ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c.a #11	ENSGT00940000160191 #12	ENSGT00530000063841.b.d #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT00910000147341	ENSGT00390000017269	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00910000147218	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34
Hominidae	ANCESTRAL SPECIES		ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c.a #11	ENSGT00940000160191 #12	ENSGT00530000063841.b.d #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT00910000147341	ENSGT00390000017269	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00910000147218	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34
Homo/Pan/Gorilla group	DUPLICATION
Homo/Pan/Gorilla group	ANCESTRAL SPECIES		ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c.a #11	ENSGT00940000160191 #12	ENSGT00530000063841.b.d #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a.e #22	ENSGT00940000162053 #23	ENSGT00910000147341	ENSGT00390000017269	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00910000147218	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34
Gorilla	MODERN SPECIES	10	PLIN4 (ENSGGOG00000016988) #7	HDGFL2 (ENSGGOG00000022122) #8	UBXN6 (ENSGGOG00000009243) #9	ENSGGOG00000040557 #10	SH3GL1 (ENSGGOG00000008198) #11	MPND (ENSGGOG00000008189) #12	STAP2 (ENSGGOG00000012964) #13	FSD1 (ENSGGOG00000012955) #14	TMIGD2 (ENSGGOG00000040045) #15	SHD (ENSGGOG00000010231) #16	YJU2 (ENSGGOG00000000335) #17	EBI3 (ENSGGOG00000011932) #18	ANKRD24 (ENSGGOG00000013418) #19	SIRT6 (ENSGGOG00000008838) #20	CREB3L3 (ENSGGOG00000008831) #21	MAP2K2 (ENSGGOG00000008832) #22	ENSGGOG00000009097 #23	ENSGGOG00000043433	ENSGGOG00000005124	PIAS4 (ENSGGOG00000007895) #24	EEF2 (ENSGGOG00000012869) #25	DAPK3 (ENSGGOG00000002018) #26	NMRK2 (ENSGGOG00000004857) #27	ENSGGOG00000038336	ATCAY (ENSGGOG00000006826) #28	ZFR2 (ENSGGOG00000002866) #29	MATK (ENSGGOG00000014700) #30	RAX2 (ENSGGOG00000014727) #31	MRPL54 (ENSGGOG00000014722) #32	APBA3 (ENSGGOG00000004637) #33	TJP3 (ENSGGOG00000004626) #34
Homo/Pan group	ANCESTRAL SPECIES		ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c.a #11	ENSGT00940000160191 #12	ENSGT00530000063841.b.d #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a.e #22	ENSGT00940000162053 #23	ENSGT00390000017269	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00910000147218	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35
Pan	ANCESTRAL SPECIES	14	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c.a #11	ENSGT00940000160191 #12	ENSGT00530000063841.b.d #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a.e #22	ENSGT00940000162053 #23	ENSGT00390000017269	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00910000147218	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35
Chimpanzee	MODERN SPECIES	10	PLIN4 (ENSPTRG00000010313) #7	HDGFL2 (ENSPTRG00000010311) #8	UBXN6 (ENSPTRG00000010310) #9	CHAF1A (ENSPTRG00000010309) #10	SH3GL1 (ENSPTRG00000010308) #11	MPND (ENSPTRG00000010307) #12	STAP2 (ENSPTRG00000051487) #13	FSD1 (ENSPTRG00000010302) #14	TMIGD2 (ENSPTRG00000010301) #15	SHD (ENSPTRG00000010300) #16	YJU2 (ENSPTRG00000010299) #17	EBI3 (ENSPTRG00000010298) #18	ANKRD24 (ENSPTRG00000010297) #19	SIRT6 (ENSPTRG00000010296) #20	CREB3L3 (ENSPTRG00000010295) #21	MAP2K2 (ENSPTRG00000010294) #22	ZBTB7A (ENSPTRG00000010292) #23	ENSPTRG00000010291	PIAS4 (ENSPTRG00000010290) #24	EEF2 (ENSPTRG00000010288) #25	DAPK3 (ENSPTRG00000010286) #26	ENSPTRG00000045925	ATCAY (ENSPTRG00000023462) #28	ZFR2 (ENSPTRG00000010279) #29	MATK (ENSPTRG00000010278) #30	RAX2 (ENSPTRG00000010277) #31	MRPL54 (ENSPTRG00000010276) #32	APBA3 (ENSPTRG00000010275) #33	TJP3 (ENSPTRG00000010274) #34	PIP5K1C (ENSPTRG00000010273) #35	CACTIN (ENSPTRG00000010272) #36
Bonobo	MODERN SPECIES	10	ENSPPAG00000031326 #7	HDGFL2 (ENSPPAG00000043341) #8	UBXN6 (ENSPPAG00000034216) #9	CHAF1A (ENSPPAG00000033194) #10	SH3GL1 (ENSPPAG00000028433) #11	MPND (ENSPPAG00000032201) #12	STAP2 (ENSPPAG00000013672) #13	FSD1 (ENSPPAG00000039445) #14	TMIGD2 (ENSPPAG00000033327) #15	SHD (ENSPPAG00000027454) #16	YJU2 (ENSPPAG00000003797) #17	EBI3 (ENSPPAG00000041603) #18	ENSPPAG00000043742 #19	SIRT6 (ENSPPAG00000034387) #20	CREB3L3 (ENSPPAG00000034576) #21	MAP2K2 (ENSPPAG00000029228) #22	ENSPPAG00000041020 #23	PIAS4 (ENSPPAG00000032474) #24	EEF2 (ENSPPAG00000042319) #25	DAPK3 (ENSPPAG00000029008) #26	ENSPPAG00000043330 #27	ENSPPAG00000043971	ATCAY (ENSPPAG00000041506) #28	ZFR2 (ENSPPAG00000031541) #29	MATK (ENSPPAG00000008704) #30	RAX2 (ENSPPAG00000039142) #31	MRPL54 (ENSPPAG00000042418) #32	APBA3 (ENSPPAG00000026188) #33	TJP3 (ENSPPAG00000040704) #34	PIP5K1C (ENSPPAG00000029984) #35	CACTIN (ENSPPAG00000028205) #36
Human	MODERN SPECIES	10	PLIN4 (ENSG00000167676) #7	HDGFL2 (ENSG00000167674) #8	UBXN6 (ENSG00000167671) #9	CHAF1A (ENSG00000167670) #10	SH3GL1 (ENSG00000141985) #11	MPND (ENSG00000008382) #12	STAP2 (ENSG00000178078) #13	FSD1 (ENSG00000105255) #14	TMIGD2 (ENSG00000167664) #15	SHD (ENSG00000105251) #16	YJU2 (ENSG00000105248) #17	EBI3 (ENSG00000105246) #18	ANKRD24 (ENSG00000089847) #19	SIRT6 (ENSG00000077463) #20	CREB3L3 (ENSG00000060566) #21	MAP2K2 (ENSG00000126934) #22	ZBTB7A (ENSG00000178951) #23	PIAS4 (ENSG00000105229) #24	EEF2 (ENSG00000167658) #25	DAPK3 (ENSG00000167657) #26	NMRK2 (ENSG00000077009) #27	ATCAY (ENSG00000167654) #28	ZFR2 (ENSG00000105278) #29	MATK (ENSG00000007264) #30	RAX2 (ENSG00000173976) #31	MRPL54 (ENSG00000183617) #32	APBA3 (ENSG00000011132) #33	TJP3 (ENSG00000105289) #34	PIP5K1C (ENSG00000186111) #35	CACTIN (ENSG00000105298) #36	TBXA2R (ENSG00000006638) #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	15	ENSGT00940000156059.k	ENSGT00910000147243	ENSGT00940000162027	ENSGT00940000161477	ENSGT01010000222360.E.c	ENSGT01030000234549.a.a.a.a.b	ENSGT00940000159122	ENSGT00940000153588.a.b	ENSGT00390000013208.y.a	ENSGT00390000003224.B	ENSGT00940000160243	ENSGT00940000159926	ENSGT00530000063347.B	ENSGT00390000013354.d.a.a.a.a	ENSGT00390000003721.d.a.d	ENSGT00940000153487.b.a.f #22	ENSGT00940000159484	ENSGT00940000157206	ENSGT01030000235325	ENSGT00950000182981.b.f.a.f	ENSGT00400000022095.a	ENSGT00510000046985.h.b.a.a.a	ENSGT00640000091917	ENSGT00390000006835	ENSGT00390000004852.a.b	ENSGT00910000147710	ENSGT00390000006086	ENSGT00940000155977	ENSGT00390000013963	ENSGT00390000015907	ENSGT00940000160121
Homo/Pan group	ANCESTRAL SPECIES	15	ENSGT00940000161358.c.a	ENSGT00940000156059.l.b	ENSGT00940000162027	ENSGT00940000161477	ENSGT01010000222360.E.c	ENSGT01030000234549.a.a.a.a.b	ENSGT00940000159122	ENSGT00940000153588.a.b	ENSGT00390000013208.y.a.a	ENSGT00390000003224.B	ENSGT00940000160243	ENSGT00940000159926	ENSGT00530000063347.B	ENSGT00390000013354.d.a.a.a.a	ENSGT00390000003721.d.a.d	ENSGT00940000153487.b.a.f #22	ENSGT00940000159484	ENSGT00940000157206	ENSGT01030000235325	ENSGT00950000182981.b.f.a.f	ENSGT00400000022095.a	ENSGT00640000091917	ENSGT00390000006835	ENSGT00390000004852.a.b	ENSGT00910000147710	ENSGT00390000006086	ENSGT00940000155977	ENSGT00390000013963	ENSGT00390000015907	ENSGT00940000160121	ENSGT00940000161774
Pan	ANCESTRAL SPECIES	13	ENSGT00940000161358.c.a	ENSGT00940000156059.l.b	ENSGT00940000162027	ENSGT00940000161477	ENSGT01010000222360.E.c	ENSGT01030000234549.a.a.a.a.b	ENSGT00940000159122	ENSGT00940000153588.a.b	ENSGT00390000013208.y.a.a	ENSGT00390000003224.B	ENSGT00940000160243	ENSGT00940000159926	ENSGT00530000063347.B	ENSGT00390000013354.d.a.a.a.a	ENSGT00390000003721.d.a.d	ENSGT00940000153487.b.a.f #22	ENSGT00940000159484	ENSGT00940000157206	ENSGT01030000235325	ENSGT00950000182981.b.f.a.f	ENSGT00400000022095.a	ENSGT00640000091917	ENSGT00390000006835	ENSGT00390000004852.a.b	ENSGT00910000147710	ENSGT00390000006086	ENSGT00940000155977	ENSGT00390000013963	ENSGT00390000015907	ENSGT00940000160121	ENSGT00940000161774
Chimpanzee	DUPLICATION
Chimpanzee	MODERN SPECIES	20	ENSPTRG00000049622	ENSPTRG00000019664	GARIN1A (ENSPTRG00000028396)	GARIN1B (ENSPTRG00000019667)	CALU (ENSPTRG00000050961)	OPN1SW (ENSPTRG00000019669)	CCDC136 (ENSPTRG00000019670)	FLNC (ENSPTRG00000019671)	ATP6V1F (ENSPTRG00000019672)	ATP6V1FNB (ENSPTRG00000050196)	KCP (ENSPTRG00000045199)	IRF5 (ENSPTRG00000019675)	TNPO3 (ENSPTRG00000019676)	ENSPTRG00000050813	ENSPTRG00000043840	ENSPTRG00000042432 #22	TSPAN33 (ENSPTRG00000019678)	SMO (ENSPTRG00000019680)	AHCYL2 (ENSPTRG00000019681)	STRIP2 (ENSPTRG00000019682)	ENSPTRG00000048623	NRF1 (ENSPTRG00000019683)	UBE2H (ENSPTRG00000041671)	ENSPTRG00000050994	ZC3HC1 (ENSPTRG00000019685)	KLHDC10 (ENSPTRG00000019687)	TMEM209 (ENSPTRG00000019691)	SSMEM1 (ENSPTRG00000019692)	CPA2 (ENSPTRG00000019693)	CPA4 (ENSPTRG00000019694)	CPA5 (ENSPTRG00000019695)
Chimpanzee	MODERN SPECIES	571															ENSPTRG00000048391	ENSPTRG00000050269 #22	ENSPTRG00000047489	ENSPTRG00000047167	ENSPTRG00000052110	ENSPTRG00000051713	ENSPTRG00000046573	ENSPTRG00000052315
Bonobo	MODERN SPECIES	20	IMPDH1 (ENSPPAG00000037421)	HILPDA (ENSPPAG00000022117)	ENSPPAG00000041977	GARIN1A (ENSPPAG00000036357)	ENSPPAG00000041706	CALU (ENSPPAG00000028481)	OPN1SW (ENSPPAG00000040601)	CCDC136 (ENSPPAG00000038709)	FLNC (ENSPPAG00000035541)	ENSPPAG00000027671	ATP6V1FNB (ENSPPAG00000034113)	KCP (ENSPPAG00000001412)	IRF5 (ENSPPAG00000031382)	TNPO3 (ENSPPAG00000034975)	ENSPPAG00000010380	ENSPPAG00000026536 #22	TSPAN33 (ENSPPAG00000029860)	SMO (ENSPPAG00000032237)	AHCYL2 (ENSPPAG00000039508)	STRIP2 (ENSPPAG00000036173)	NRF1 (ENSPPAG00000040353)	UBE2H (ENSPPAG00000040966)	ENSPPAG00000043329	ZC3HC1 (ENSPPAG00000043172)	KLHDC10 (ENSPPAG00000035194)	TMEM209 (ENSPPAG00000029839)	SSMEM1 (ENSPPAG00000029778)	CPA2 (ENSPPAG00000042610)	CPA4 (ENSPPAG00000024844)	CPA5 (ENSPPAG00000028093)	CPA1 (ENSPPAG00000038156)
Gorilla	MODERN SPECIES	20	ENSGGOG00000040589	ENSGGOG00000039433	GARIN1A (ENSGGOG00000026799)	ENSGGOG00000004895	CALU (ENSGGOG00000005817)	OPN1SW (ENSGGOG00000005822)	CCDC136 (ENSGGOG00000005828)	FLNC (ENSGGOG00000002420)	ATP6V1F (ENSGGOG00000023527)	ATP6V1FNB (ENSGGOG00000038602)	KCP (ENSGGOG00000015103)	IRF5 (ENSGGOG00000012013)	TNPO3 (ENSGGOG00000008339)	ENSGGOG00000023221	ENSGGOG00000036972	ENSGGOG00000027737 #22	TSPAN33 (ENSGGOG00000007835)	SMO (ENSGGOG00000003227)	AHCYL2 (ENSGGOG00000025074)	STRIP2 (ENSGGOG00000016807)	ENSGGOG00000022169	SMKR1 (ENSGGOG00000038256)	NRF1 (ENSGGOG00000010726)	UBE2H (ENSGGOG00000042613)	ENSGGOG00000039406	ZC3HC1 (ENSGGOG00000015504)	KLHDC10 (ENSGGOG00000000677)	TMEM209 (ENSGGOG00000034882)	SSMEM1 (ENSGGOG00000038460)	CPA2 (ENSGGOG00000002408)	CPA4 (ENSGGOG00000040989)
Orangutan	MODERN SPECIES	10	HDGFL2 (ENSPPYG00000009408) #8	UBXN6 (ENSPPYG00000009407) #9	CHAF1A (ENSPPYG00000009406) #10	SH3GL1 (ENSPPYG00000009405) #11	MPND (ENSPPYG00000009404) #12	STAP2 (ENSPPYG00000009403) #13	FSD1 (ENSPPYG00000009402) #14	TMIGD2 (ENSPPYG00000009401) #15	SHD (ENSPPYG00000009400) #16	YJU2 (ENSPPYG00000009399) #17	EBI3 (ENSPPYG00000009398) #18	ANKRD24 (ENSPPYG00000009397) #19	SIRT6 (ENSPPYG00000009396) #20	CREB3L3 (ENSPPYG00000009395) #21	ENSPPYG00000041684	ENSPPYG00000033737 #22	ZBTB7A (ENSPPYG00000010584) #23	PIAS4 (ENSPPYG00000009394) #24	EEF2 (ENSPPYG00000009393) #25	DAPK3 (ENSPPYG00000009392) #26	NMRK2 (ENSPPYG00000009391) #27	ATCAY (ENSPPYG00000009390) #28	ZFR2 (ENSPPYG00000009389) #29	MATK (ENSPPYG00000009388) #30	RAX2 (ENSPPYG00000009387) #31	MRPL54 (ENSPPYG00000040130) #32	APBA3 (ENSPPYG00000009385) #33	TJP3 (ENSPPYG00000009384) #34	PIP5K1C (ENSPPYG00000009383) #35	CACTIN (ENSPPYG00000009382) #36	TBXA2R (ENSPPYG00000009381) #37
Gibbon	DUPLICATION
Gibbon	MODERN SPECIES	7	PLIN5 (ENSNLEG00000013304) ##7	ENSNLEG00000029998 #7	ENSNLEG00000013287 #8	UBXN6 (ENSNLEG00000003179) #9	CHAF1A (ENSNLEG00000003132) #10	SH3GL1 (ENSNLEG00000003122) #11	ENSNLEG00000003118 #14	TMIGD2 (ENSNLEG00000003114) #15	SHD (ENSNLEG00000003109) #16	ENSNLEG00000003106 #17	ENSNLEG00000031416	EBI3 (ENSNLEG00000003102) #18	ANKRD24 (ENSNLEG00000002891) #19	ENSNLEG00000003083 #20	ENSNLEG00000002909 #21	MAP2K2 (ENSNLEG00000003013) #22	ENSNLEG00000029515	ENSNLEG00000019024	ENSNLEG00000002981 #25	DAPK3 (ENSNLEG00000002973) #26	NMRK2 (ENSNLEG00000002935) #27	ENSNLEG00000027774	ATCAY (ENSNLEG00000002928) #28	ZFR2 (ENSNLEG00000002912) #29	MATK (ENSNLEG00000002816) #30	RAX2 (ENSNLEG00000002811) #31	ENSNLEG00000002809 #32	APBA3 (ENSNLEG00000002776) #33	TJP3 (ENSNLEG00000002720) #34	ENSNLEG00000031233 #35	ENSNLEG00000002565 #36
Gibbon	MODERN SPECIES	3	HILPDA (ENSNLEG00000028127)	ENSNLEG00000012368	ENSNLEG00000012374	CALU (ENSNLEG00000012380)	OPN1SW (ENSNLEG00000012417)	CCDC136 (ENSNLEG00000012424)	FLNC (ENSNLEG00000012428)	ATP6V1F (ENSNLEG00000012442)	ATP6V1FNB (ENSNLEG00000012447)	KCP (ENSNLEG00000012449)	IRF5 (ENSNLEG00000012454)	TNPO3 (ENSNLEG00000012491)	ENSNLEG00000027686	ENSNLEG00000031882	ENSNLEG00000028436	ENSNLEG00000012555 #22	TSPAN33 (ENSNLEG00000012558)	SMO (ENSNLEG00000012575)	AHCYL2 (ENSNLEG00000012581)	STRIP2 (ENSNLEG00000012629)	ENSNLEG00000031314	SMKR1 (ENSNLEG00000018605)	NRF1 (ENSNLEG00000012659)	UBE2H (ENSNLEG00000012685)	ZC3HC1 (ENSNLEG00000012698)	KLHDC10 (ENSNLEG00000012718)	ENSNLEG00000029386	TMEM209 (ENSNLEG00000012732)	SSMEM1 (ENSNLEG00000012746)	CPA2 (ENSNLEG00000012753)	CPA4 (ENSNLEG00000012761)
Euarchontoglires_A	ANCESTRAL SPECIES	24	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT01000000215054	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37
Glires	ANCESTRAL SPECIES	25	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT01000000215054	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37
Lagomorpha	ANCESTRAL SPECIES																	ENSGT00940000153487.b.a #22
Pika	DUPLICATION
Pika	MODERN SPECIES	1679																ENSOPRG00000011096 #22
Pika	MODERN SPECIES	8706																ENSOPRG00000019099 #22
Rodentia	ANCESTRAL SPECIES	17	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT01000000215054	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37
Rodentia_A	ANCESTRAL SPECIES	16	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37
Hystricomorpha	ANCESTRAL SPECIES	19	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000160274	ENSGT00950000182964.a.b.b	ENSGT01100000263497.E.a.b	ENSGT00940000159915	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00500000044957	ENSGT00390000003403	ENSGT00940000154660.a	ENSGT00950000182916.a.a
Naked mole-rat female	MODERN SPECIES	21	HDGFL2 (ENSHGLG00000010821) #8	UBXN6 (ENSHGLG00000011971) #9	ENSHGLG00000035324	CHAF1A (ENSHGLG00000005439) #10	SH3GL1 (ENSHGLG00000005623) #11	MPND (ENSHGLG00000006669) #12	STAP2 (ENSHGLG00000008727) #13	FSD1 (ENSHGLG00000006238) #14	TMIGD2 (ENSHGLG00000036449) #15	SHD (ENSHGLG00000007108) #16	YJU2 (ENSHGLG00000008096) #17	ENSHGLG00000005526	ANKRD24 (ENSHGLG00000010865) #19	SIRT6 (ENSHGLG00000006696) #20	CREB3L3 (ENSHGLG00000050546) #21	MAP2K2 (ENSHGLG00000009089) #22	ZBTB7A (ENSHGLG00000011811) #23	PIAS4 (ENSHGLG00000006172) #24	ENSHGLG00000007881 #25	DAPK3 (ENSHGLG00000009769) #26	ENSHGLG00000015025	GADD45B (ENSHGLG00000044805)	GNG7 (ENSHGLG00000017287)	DIRAS1 (ENSHGLG00000013381)	SLC39A3 (ENSHGLG00000033652)	SGTA (ENSHGLG00000018547)	ENSHGLG00000040783	ENSHGLG00000019144	DOHH (ENSHGLG00000039512)	SMIM44 (ENSHGLG00000040448)	ENSHGLG00000036870
Hystricomorpha_a	ANCESTRAL SPECIES	15	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000160274	ENSGT00950000182964.a.b.b	ENSGT01100000263497.E.a.b	ENSGT00940000159915	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00500000044957	ENSGT00940000154660.a	ENSGT00950000182916.a.a	ENSGT00940000154201.a.a.b.d
Hystricomorpha_b	ANCESTRAL SPECIES	17	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000160274	ENSGT00950000182964.a.b.b	ENSGT01100000263497.E.a.b	ENSGT00940000159915	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00500000044957	ENSGT00940000154660.a	ENSGT00950000182916.a.a	ENSGT00940000154201.a.a.b.d
Long-tailed chinchilla	MODERN SPECIES	202	PLIN5 (ENSCLAG00000015835) ##7	HDGFL2 (ENSCLAG00000008598) #8	UBXN6 (ENSCLAG00000010885) #9	CHAF1A (ENSCLAG00000008702) #10	SH3GL1 (ENSCLAG00000006871) #11	MPND (ENSCLAG00000007417) #12	STAP2 (ENSCLAG00000008850) #13	FSD1 (ENSCLAG00000013151) #14	TMIGD2 (ENSCLAG00000016455) #15	SHD (ENSCLAG00000009664) #16	YJU2 (ENSCLAG00000010329) #17	EBI3 (ENSCLAG00000013574) #18	ENSCLAG00000011806 #19	SIRT6 (ENSCLAG00000008888) #20	CREB3L3 (ENSCLAG00000011297) #21	MAP2K2 (ENSCLAG00000011717) #22	ZBTB7A (ENSCLAG00000012947) #23	PIAS4 (ENSCLAG00000014404) #24	EEF2 (ENSCLAG00000014112) #25	DAPK3 (ENSCLAG00000009010) #26	LMNB2 (ENSCLAG00000007920)	GADD45B (ENSCLAG00000008923)	GNG7 (ENSCLAG00000009115)	DIRAS1 (ENSCLAG00000017925)	SGTA (ENSCLAG00000010647)	THOP1 (ENSCLAG00000015063)	DOHH (ENSCLAG00000007817)	SMIM24 (ENSCLAG00000007177)	NFIC (ENSCLAG00000007526)	CELF5 (ENSCLAG00000009940)	NCLN (ENSCLAG00000008645)
Degu	MODERN SPECIES	91	PLIN5 (ENSODEG00000014740) ##7	PLIN4 (ENSODEG00000015715) #7	ENSODEG00000015495 #8	UBXN6 (ENSODEG00000015912) #9	CHAF1A (ENSODEG00000015861) #10	SH3GL1 (ENSODEG00000015344) #11	MPND (ENSODEG00000014317) #12	STAP2 (ENSODEG00000015068) #13	FSD1 (ENSODEG00000014478) #14	SHD (ENSODEG00000014897) #16	YJU2 (ENSODEG00000014993) #17	ENSODEG00000020237	EBI3 (ENSODEG00000014290) #18	ENSODEG00000014163 #19	SIRT6 (ENSODEG00000015363) #20	MAP2K2 (ENSODEG00000014670) #22	ZBTB7A (ENSODEG00000014027) #23	PIAS4 (ENSODEG00000015061) #24	ENSODEG00000014175 #25	DAPK3 (ENSODEG00000014160) #26	ENSODEG00000014763	GADD45B (ENSODEG00000014386)	GNG7 (ENSODEG00000014141)	DIRAS1 (ENSODEG00000020412)	SLC39A3 (ENSODEG00000014274)	SGTA (ENSODEG00000014332)	THOP1 (ENSODEG00000013736)	ENSODEG00000013996	DOHH (ENSODEG00000014181)	ENSODEG00000015846	NFIC (ENSODEG00000015267)
Guinea pig	MODERN SPECIES	253									STAP2 (ENSCPOG00000025858) #13	FSD1 (ENSCPOG00000019419) #14	SHD (ENSCPOG00000008098) #16	YJU2 (ENSCPOG00000000707) #17	EBI3 (ENSCPOG00000000706) #18	ENSCPOG00000006206 #19	CREB3L3 (ENSCPOG00000010134) #21	MAP2K2 (ENSCPOG00000025428) #22	ZBTB7A (ENSCPOG00000035268) #23	PIAS4 (ENSCPOG00000002364) #24	EEF2 (ENSCPOG00000015697) #25	DAPK3 (ENSCPOG00000031679) #26	ENSCPOG00000037980	GADD45B (ENSCPOG00000034176)	GNG7 (ENSCPOG00000033946)	SLC39A3 (ENSCPOG00000034643)	SGTA (ENSCPOG00000030366)	THOP1 (ENSCPOG00000021762)	DOHH (ENSCPOG00000035221)
Sciuridae	DUPLICATION
Sciuridae	ANCESTRAL SPECIES																	ENSGT00940000153487.b.a.k #22
Eurasian red squirrel	MODERN SPECIES	156	ENSSVLG00005015416	ENSSVLG00005015384	NAP1L2 (ENSSVLG00005015352)	CDX4 (ENSSVLG00005015316)	ENSSVLG00005015182	ZCCHC13 (ENSSVLG00005015163)	SLC16A2 (ENSSVLG00005015129)	RLIM (ENSSVLG00005015096)	NEXMIF (ENSSVLG00005015017)	ABCB7 (ENSSVLG00005014285)	UPRT (ENSSVLG00005014152)	ZDHHC15 (ENSSVLG00005014065)	MAGEE2 (ENSSVLG00005014015)	ENSSVLG00005013933	PBDC1 (ENSSVLG00005013885)	ENSSVLG00005013840 #22	MAGEE1 (ENSSVLG00005013812)	ENSSVLG00005013720	ENSSVLG00005013671	ENSSVLG00005013604	ENSSVLG00005013555	FGF16 (ENSSVLG00005013490)	ATRX (ENSSVLG00005013376)	ENSSVLG00005012812	ENSSVLG00005012706	ENSSVLG00005012657	ENSSVLG00005012574	ENSSVLG00005012533	ATP7A (ENSSVLG00005012051)	ENSSVLG00005011999	ENSSVLG00005011883
Sciuridae	ANCESTRAL SPECIES	23	ENSGT00950000182920.b.a.a.c.b ##7	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a.l #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	7	HDGFL2 (ENSSVLG00005018647) #8	UBXN6 (ENSSVLG00005018509) #9	CHAF1A (ENSSVLG00005018270) #10	SH3GL1 (ENSSVLG00005018172) #11	MPND (ENSSVLG00005017709) #12	ENSSVLG00005017600	STAP2 (ENSSVLG00005017361) #13	FSD1 (ENSSVLG00005017052) #14	ENSSVLG00005017014	SHD (ENSSVLG00005016880) #16	YJU2 (ENSSVLG00005016793) #17	EBI3 (ENSSVLG00005024929) #18	ANKRD24 (ENSSVLG00005024883) #19	SIRT6 (ENSSVLG00005024827) #20	CREB3L3 (ENSSVLG00005024770) #21	ENSSVLG00005024698 #22	ZBTB7A (ENSSVLG00005024657) #23	PIAS4 (ENSSVLG00005024634) #24	ENSSVLG00005024605 #25	DAPK3 (ENSSVLG00005024571) #26	ENSSVLG00005024541 #27	ATCAY (ENSSVLG00005024510) #28	ZFR2 (ENSSVLG00005024341) #29	MATK (ENSSVLG00005024229) #30	RAX2 (ENSSVLG00005024207) #31	MRPL54 (ENSSVLG00005024184) #32	TJP3 (ENSSVLG00005023962) #34	PIP5K1C (ENSSVLG00005023887) #35	CACTIN (ENSSVLG00005023836) #36	TBXA2R (ENSSVLG00005023817) #37	GIPC3 (ENSSVLG00005023804)
Eurasian red squirrel	MODERN SPECIES	13	FAM170B (ENSSVLG00005002335)	VSTM4 (ENSSVLG00005002356)	WDFY4 (ENSSVLG00005002424)	LRRC18 (ENSSVLG00005002547)	ARHGAP22 (ENSSVLG00005002587)	ENSSVLG00005002634	MAPK8 (ENSSVLG00005002686)	FRMPD2 (ENSSVLG00005002807)	ENSSVLG00005003026	PTPN20 (ENSSVLG00005003065)	GDF10 (ENSSVLG00005003156)	GDF2 (ENSSVLG00005003178)	RBP3 (ENSSVLG00005003192)	ENSSVLG00005003212	ENSSVLG00005003224	ENSSVLG00005003322 #22	ENSSVLG00005003335	ENSSVLG00005003349	ENSSVLG00005003360	ENSSVLG00005003375	ENSSVLG00005003408	ENSSVLG00005003415	ENSSVLG00005003421	ENSSVLG00005003435	ENSSVLG00005003459	ENSSVLG00005003469	ENSSVLG00005003498	ENSSVLG00005003511	ENSSVLG00005003522	ENSSVLG00005003534	ENSSVLG00005003579
Marmotini	ANCESTRAL SPECIES	24	ENSGT00950000182920.b.a.a.c.b ##7	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a.l #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37
Alpin marmot	MODERN SPECIES	88	MYDGF (ENSMMMG00000018460)	ENSMMMG00000018426	LRG1 (ENSMMMG00000018424)	ENSMMMG00000018410 ##7	HDGFL2 (ENSMMMG00000018325) #8	UBXN6 (ENSMMMG00000018303) #9	CHAF1A (ENSMMMG00000018263) #10	SH3GL1 (ENSMMMG00000018246) #11	MPND (ENSMMMG00000018208) #12	STAP2 (ENSMMMG00000018200) #13	FSD1 (ENSMMMG00000018181) #14	SHD (ENSMMMG00000018157) #16	YJU2 (ENSMMMG00000018139) #17	ENSMMMG00000018130 #18	ANKRD24 (ENSMMMG00000018078) #19	MAP2K2 (ENSMMMG00000017211) #22	PIAS4 (ENSMMMG00000017032) #24	EEF2 (ENSMMMG00000017019) #25	DAPK3 (ENSMMMG00000017015) #26	NMRK2 (ENSMMMG00000017009) #27	ZFR2 (ENSMMMG00000016959) #29	APBA3 (ENSMMMG00000016885) #33	TJP3 (ENSMMMG00000016855) #34	CACTIN (ENSMMMG00000016832) #36	ENSMMMG00000016827	GIPC3 (ENSMMMG00000016813)	HMG20B (ENSMMMG00000016794)	ENSMMMG00000016792	ENSMMMG00000016780	DOHH (ENSMMMG00000016778)	ENSMMMG00000016774
Marmotini_b	ANCESTRAL SPECIES	9	ENSGT00950000182920.b.a.a.c.b ##7	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a.l #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37
Squirrel	MODERN SPECIES	188	ENSSTOG00000030331	HDGFL2 (ENSSTOG00000007383) #8	UBXN6 (ENSSTOG00000014906) #9	CHAF1A (ENSSTOG00000014889) #10	SH3GL1 (ENSSTOG00000008579) #11	MPND (ENSSTOG00000008666) #12	STAP2 (ENSSTOG00000022594) #13	FSD1 (ENSSTOG00000008010) #14	SHD (ENSSTOG00000024753) #16	YJU2 (ENSSTOG00000014684) #17	EBI3 (ENSSTOG00000024345) #18	ENSSTOG00000024418	ENSSTOG00000032271 #19	SIRT6 (ENSSTOG00000022298) #20	CREB3L3 (ENSSTOG00000028871) #21	MAP2K2 (ENSSTOG00000002366) #22	ZBTB7A (ENSSTOG00000026956) #23	PIAS4 (ENSSTOG00000012472) #24	EEF2 (ENSSTOG00000005050) #25	DAPK3 (ENSSTOG00000005038) #26	NMRK2 (ENSSTOG00000021661) #27	ATCAY (ENSSTOG00000026376) #28	ZFR2 (ENSSTOG00000025821) #29	MATK (ENSSTOG00000011892) #30	RAX2 (ENSSTOG00000024315) #31	MRPL54 (ENSSTOG00000022378) #32	APBA3 (ENSSTOG00000000352) #33	TJP3 (ENSSTOG00000024962) #34	PIP5K1C (ENSSTOG00000023021) #35	CACTIN (ENSSTOG00000001235) #36	TBXA2R (ENSSTOG00000028290) #37
Arctic ground squirrel	MODERN SPECIES	301	PLIN5 (ENSUPAG00010009919) ##7	ENSUPAG00010009913 #7	HDGFL2 (ENSUPAG00010009901) #8	UBXN6 (ENSUPAG00010009881) #9	CHAF1A (ENSUPAG00010009868) #10	SH3GL1 (ENSUPAG00010009851) #11	MPND (ENSUPAG00010009625) #12	STAP2 (ENSUPAG00010009594) #13	FSD1 (ENSUPAG00010009576) #14	SHD (ENSUPAG00010009570) #16	YJU2 (ENSUPAG00010009548) #17	EBI3 (ENSUPAG00010009541) #18	ANKRD24 (ENSUPAG00010009488) #19	SIRT6 (ENSUPAG00010009478) #20	CREB3L3 (ENSUPAG00010009456) #21	MAP2K2 (ENSUPAG00010009423) #22	ZBTB7A (ENSUPAG00010009414) #23	PIAS4 (ENSUPAG00010009393) #24	EEF2 (ENSUPAG00010009366) #25	DAPK3 (ENSUPAG00010009346) #26	NMRK2 (ENSUPAG00010009304) #27	ATCAY (ENSUPAG00010009286) #28	ZFR2 (ENSUPAG00010009277) #29	MATK (ENSUPAG00010008858) #30	RAX2 (ENSUPAG00010008848) #31	MRPL54 (ENSUPAG00010008838) #32	APBA3 (ENSUPAG00010008831) #33	TJP3 (ENSUPAG00010008756) #34	PIP5K1C (ENSUPAG00010008552) #35	CACTIN (ENSUPAG00010008542) #36	TBXA2R (ENSUPAG00010008535) #37
Rodentia_B	ANCESTRAL SPECIES	28	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT01000000215054	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37	ENSGT00390000003420.b
Myomorpha	ANCESTRAL SPECIES	27	ENSGT00390000012911	ENSGT00940000159808	ENSGT00940000162661	ENSGT00510000047872	ENSGT00940000158753	ENSGT00940000159993	ENSGT00390000014000	ENSGT00940000160274	ENSGT00950000182964.a.b.b	ENSGT01100000263497.E.a.b	ENSGT00940000159915	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37	ENSGT00390000003420.b
Muroidea	ANCESTRAL SPECIES	32	ENSGT00390000012911	ENSGT00940000159808	ENSGT00940000162661	ENSGT00510000047872	ENSGT00940000158753	ENSGT00940000159993	ENSGT00390000014000	ENSGT00940000160274	ENSGT00950000182964.a.b.b	ENSGT01100000263497.E.a.b	ENSGT00940000159915	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37	ENSGT00390000003420.b
Muroidea_A	ANCESTRAL SPECIES	25	ENSGT00390000012911	ENSGT00940000159808	ENSGT00940000162661	ENSGT00510000047872	ENSGT00940000158753	ENSGT00940000159993	ENSGT00390000014000	ENSGT00940000160274	ENSGT00950000182964.a.b.b	ENSGT01100000263497.E.a.b	ENSGT00940000159915	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37	ENSGT00390000003420.b
Cricetidae	ANCESTRAL SPECIES	25	ENSGT00390000012911	ENSGT00940000159808	ENSGT00940000162661	ENSGT00510000047872	ENSGT00940000158753.j	ENSGT00940000159993	ENSGT00390000014000.l	ENSGT00940000160274	ENSGT00950000182964.a.b.b	ENSGT01100000263497.E.a.b	ENSGT00940000159915	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37	ENSGT00390000003420.b
Cricetidae_B	ANCESTRAL SPECIES	27	ENSGT00390000012911	ENSGT00940000159808	ENSGT00940000162661	ENSGT00510000047872	ENSGT00940000158753.j	ENSGT00940000159993	ENSGT00390000014000.l	ENSGT00940000160274	ENSGT00950000182964.a.b.b	ENSGT01100000263497.E.a.b	ENSGT00940000159915	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37	ENSGT00390000003420.b
Northern American deer mouse	MODERN SPECIES	14	Sf3a2 (ENSPEMG00000021288)	Amh (ENSPEMG00000022697)	Lingo3 (ENSPEMG00000013558)	Lsm7 (ENSPEMG00000027858)	ENSPEMG00000031069	ENSPEMG00000022141	Tmprss9 (ENSPEMG00000017231)	Timm13 (ENSPEMG00000011224)	Lmnb2 (ENSPEMG00000021474)	Gadd45b (ENSPEMG00000021504)	Diras1 (ENSPEMG00000015735)	Slc39a3 (ENSPEMG00000020829)	Sgta (ENSPEMG00000020795)	Thop1 (ENSPEMG00000023842)	Creb3l3 (ENSPEMG00000008823) #21	Map2k2 (ENSPEMG00000021952) #22	Zbtb7a (ENSPEMG00000025614) #23	Pias4 (ENSPEMG00000021214) #24	Eef2 (ENSPEMG00000021167) #25	ENSPEMG00000020977	Nmrk2 (ENSPEMG00000021630) #27	Atcay (ENSPEMG00000021027) #28	Zfr2 (ENSPEMG00000020763) #29	Matk (ENSPEMG00000020804) #30	Mrpl54 (ENSPEMG00000022929) #32	Apba3 (ENSPEMG00000021227) #33	Tjp3 (ENSPEMG00000021396) #34	Pip5k1c (ENSPEMG00000020543) #35	Cactin (ENSPEMG00000021732) #36	Tbxa2r (ENSPEMG00000015376) #37	Gipc3 (ENSPEMG00000014161)
Prairie vole	MODERN SPECIES	349	ENSMOCG00000010141	ENSMOCG00000022351	Lingo3 (ENSMOCG00000020965)	Lsm7 (ENSMOCG00000016925)	Sppl2b (ENSMOCG00000021520)	Tmprss9 (ENSMOCG00000018694)	Timm13 (ENSMOCG00000010859)	Lmnb2 (ENSMOCG00000002928)	Gadd45b (ENSMOCG00000019277)	Gng7 (ENSMOCG00000016990)	Diras1 (ENSMOCG00000000231)	Slc39a3 (ENSMOCG00000013732)	Sgta (ENSMOCG00000001498)	Thop1 (ENSMOCG00000001107)	Creb3l3 (ENSMOCG00000013966) #21	Map2k2 (ENSMOCG00000022138) #22	Zbtb7a (ENSMOCG00000010291) #23	Pias4 (ENSMOCG00000022430) #24	ENSMOCG00000019369 #25	Dapk3 (ENSMOCG00000019017) #26	Nmrk2 (ENSMOCG00000003146) #27	Atcay (ENSMOCG00000011102) #28	Zfr2 (ENSMOCG00000010727) #29	Matk (ENSMOCG00000001438) #30	Mrpl54 (ENSMOCG00000017895) #32	Apba3 (ENSMOCG00000015694) #33	Tjp3 (ENSMOCG00000013578) #34	Pip5k1c (ENSMOCG00000008488) #35	Cactin (ENSMOCG00000011992) #36	Tbxa2r (ENSMOCG00000005701) #37	Gipc3 (ENSMOCG00000002475)
Cricetinae	ANCESTRAL SPECIES	4	ENSGT00390000012911	ENSGT00940000159808	ENSGT00940000162661	ENSGT00510000047872	ENSGT00940000158753.j	ENSGT00940000159993	ENSGT00390000014000.l	ENSGT00940000160274	ENSGT00950000182964.a.b.b	ENSGT01100000263497.E.a.b	ENSGT00940000159915	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37	ENSGT00390000003420.b
Golden Hamster	MODERN SPECIES	764	Jsrp1 (ENSMAUG00000013914)	Oaz1 (ENSMAUG00000011178)	Lingo3 (ENSMAUG00000009853)	Lsm7 (ENSMAUG00000009276)	Sppl2b (ENSMAUG00000020905)	Tmprss9 (ENSMAUG00000008320)	Timm13 (ENSMAUG00000013865)	Lmnb2 (ENSMAUG00000019979)	Gadd45b (ENSMAUG00000015240)	Gng7 (ENSMAUG00000009781)	Diras1 (ENSMAUG00000021227)	Slc39a3 (ENSMAUG00000021542)	Sgta (ENSMAUG00000004385)	Thop1 (ENSMAUG00000016713)	Creb3l3 (ENSMAUG00000020928) #21	Map2k2 (ENSMAUG00000011695) #22	Zbtb7a (ENSMAUG00000019026) #23	Pias4 (ENSMAUG00000012696) #24	Eef2 (ENSMAUG00000007062) #25	Dapk3 (ENSMAUG00000021234) #26	Nmrk2 (ENSMAUG00000003333) #27	Atcay (ENSMAUG00000017532) #28	Zfr2 (ENSMAUG00000016438) #29	Matk (ENSMAUG00000019712) #30	Mrpl54 (ENSMAUG00000009543) #32	Apba3 (ENSMAUG00000007859) #33	Tjp3 (ENSMAUG00000010092) #34	Pip5k1c (ENSMAUG00000014134) #35	Cactin (ENSMAUG00000011643) #36	Tbxa2r (ENSMAUG00000015276) #37	Gipc3 (ENSMAUG00000021524)
Chinese hamster chok1gshd	MODERN SPECIES	2	Jsrp1 (ENSCGRG00001012783)	Oaz1 (ENSCGRG00001013579)	Lingo3 (ENSCGRG00001011202)	ENSCGRG00001000807	Sppl2b (ENSCGRG00001001858)	Tmprss9 (ENSCGRG00001004422)	Timm13 (ENSCGRG00001013045)	Lmnb2 (ENSCGRG00001006502)	Gadd45b (ENSCGRG00001024479)	Gng7 (ENSCGRG00001003146)	Diras1 (ENSCGRG00001010873)	Slc39a3 (ENSCGRG00001010295)	Sgta (ENSCGRG00001008900)	Thop1 (ENSCGRG00001024327)	Creb3l3 (ENSCGRG00001004276) #21	Map2k2 (ENSCGRG00001013300) #22	Zbtb7a (ENSCGRG00001019218) #23	Pias4 (ENSCGRG00001019465) #24	Eef2 (ENSCGRG00001021031) #25	Dapk3 (ENSCGRG00001006998) #26	Nmrk2 (ENSCGRG00001016553) #27	Atcay (ENSCGRG00001017209) #28	Zfr2 (ENSCGRG00001019870) #29	Matk (ENSCGRG00001015278) #30	Mrpl54 (ENSCGRG00001019482) #32	Apba3 (ENSCGRG00001019836) #33	Tjp3 (ENSCGRG00001001459) #34	Pip5k1c (ENSCGRG00001017002) #35	Cactin (ENSCGRG00001021287) #36	Tbxa2r (ENSCGRG00001014446) #37	Gipc3 (ENSCGRG00001016082)
Murinae	ANCESTRAL SPECIES	25	ENSGT00390000012911	ENSGT00940000159808	ENSGT00940000162661	ENSGT00510000047872	ENSGT00940000158753	ENSGT00940000159993	ENSGT00390000014000	ENSGT00940000160274	ENSGT00950000182964.a.b.b	ENSGT01100000263497.E.a.b	ENSGT00940000159915	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37	ENSGT00390000003420.b
Mus	ANCESTRAL SPECIES	15	ENSGT00390000012911	ENSGT00940000159808	ENSGT00940000162661	ENSGT00510000047872	ENSGT00940000158753	ENSGT00940000159993	ENSGT00390000014000	ENSGT00940000160274	ENSGT00950000182964.a.b.b	ENSGT01100000263497.E.a.b	ENSGT00940000159915	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37	ENSGT00390000003420.b
Mus_A	ANCESTRAL SPECIES	11	ENSGT00390000012911	ENSGT00940000159808	ENSGT00940000162661	ENSGT00510000047872	ENSGT00940000158753	ENSGT00940000159993	ENSGT00390000014000	ENSGT00940000160274	ENSGT00950000182964.a.b.b	ENSGT01100000263497.E.a.b	ENSGT00940000159915	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a.c.b #36	ENSGT01030000234559.a.a.a #37	ENSGT00390000003420.b
Mus_B	ANCESTRAL SPECIES	10	ENSGT00390000012911	ENSGT00940000159808	ENSGT00940000162661	ENSGT00510000047872	ENSGT00940000158753	ENSGT00940000159993	ENSGT00390000014000	ENSGT00940000160274	ENSGT00950000182964.a.b.b	ENSGT01100000263497.E.a.b	ENSGT00940000159915	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a.c.b #36	ENSGT01030000234559.a.a.a #37	ENSGT00390000003420.b
Mouse	MODERN SPECIES	1	Jsrp1 (ENSMUSG00000020216)	Oaz1 (ENSMUSG00000035242)	Lingo3 (ENSMUSG00000051067)	Lsm7 (ENSMUSG00000035215)	Sppl2b (ENSMUSG00000035206)	Tmprss9 (ENSMUSG00000059406)	Timm13 (ENSMUSG00000020219)	Lmnb2 (ENSMUSG00000062075)	Gadd45b (ENSMUSG00000015312)	Gng7 (ENSMUSG00000048240)	Diras1 (ENSMUSG00000043670)	Slc39a3 (ENSMUSG00000046822)	Sgta (ENSMUSG00000004937)	Thop1 (ENSMUSG00000004929)	Creb3l3 (ENSMUSG00000035041) #21	Map2k2 (ENSMUSG00000035027) #22	Zbtb7a (ENSMUSG00000035011) #23	Pias4 (ENSMUSG00000004934) #24	Eef2 (ENSMUSG00000034994) #25	Dapk3 (ENSMUSG00000034974) #26	Nmrk2 (ENSMUSG00000004939) #27	Atcay (ENSMUSG00000034958) #28	Zfr2 (ENSMUSG00000034949) #29	Matk (ENSMUSG00000004933) #30	Mrpl54 (ENSMUSG00000034932) #32	Apba3 (ENSMUSG00000004931) #33	Tjp3 (ENSMUSG00000034917) #34	Pip5k1c (ENSMUSG00000034902) #35	Cactin (ENSMUSG00000034889) #36	Tbxa2r (ENSMUSG00000034881) #37	Gipc3 (ENSMUSG00000034872)
Mus_C	ANCESTRAL SPECIES	7	ENSGT00390000012911	ENSGT00940000159808	ENSGT00940000162661	ENSGT00510000047872	ENSGT00940000158753	ENSGT00940000159993	ENSGT00390000014000	ENSGT00940000160274	ENSGT00950000182964.a.b.b	ENSGT01100000263497.E.a.b	ENSGT00940000159915	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a.c.b #36	ENSGT01030000234559.a.a.a #37	ENSGT00390000003420.b
spretus	MODERN SPECIES	1	Jsrp1 (MGP_SPRETEiJ_G0016422)	MGP_SPRETEiJ_G0016423	Lingo3 (MGP_SPRETEiJ_G0016424)	Lsm7 (MGP_SPRETEiJ_G0016425)	Sppl2b (MGP_SPRETEiJ_G0016426)	Tmprss9 (MGP_SPRETEiJ_G0016427)	Timm13 (MGP_SPRETEiJ_G0016428)	Lmnb2 (MGP_SPRETEiJ_G0016429)	Gadd45b (MGP_SPRETEiJ_G0016430)	Gng7 (MGP_SPRETEiJ_G0016431)	Diras1 (MGP_SPRETEiJ_G0016432)	Slc39a3 (MGP_SPRETEiJ_G0016433)	Sgta (MGP_SPRETEiJ_G0016434)	Thop1 (MGP_SPRETEiJ_G0016435)	Creb3l3 (MGP_SPRETEiJ_G0016436) #21	Map2k2 (MGP_SPRETEiJ_G0016437) #22	Zbtb7a (MGP_SPRETEiJ_G0016438) #23	Pias4 (MGP_SPRETEiJ_G0016439) #24	Eef2 (MGP_SPRETEiJ_G0016440) #25	MGP_SPRETEiJ_G0016441	Dapk3 (MGP_SPRETEiJ_G0016442) #26	Nmrk2 (MGP_SPRETEiJ_G0016443) #27	Atcay (MGP_SPRETEiJ_G0016444) #28	Zfr2 (MGP_SPRETEiJ_G0016445) #29	Matk (MGP_SPRETEiJ_G0016446) #30	Mrpl54 (MGP_SPRETEiJ_G0016447) #32	Apba3 (MGP_SPRETEiJ_G0016448) #33	Tjp3 (MGP_SPRETEiJ_G0016449) #34	Pip5k1c (MGP_SPRETEiJ_G0016450) #35	Cactin (MGP_SPRETEiJ_G0016451) #36	Tbxa2r (MGP_SPRETEiJ_G0016452) #37
Steppe mouse	MODERN SPECIES	2590									Gadd45b (ENSMSIG00000024681)	Gng7 (ENSMSIG00000024661)	Diras1 (ENSMSIG00000024655)	Slc39a3 (ENSMSIG00000024644)	Sgta (ENSMSIG00000024618)	Thop1 (ENSMSIG00000024603)	Creb3l3 (ENSMSIG00000024590) #21	Map2k2 (ENSMSIG00000024534) #22	ENSMSIG00000024524 #23	Pias4 (ENSMSIG00000024505) #24	ENSMSIG00000024474 #25	Dapk3 (ENSMSIG00000024443) #26	Nmrk2 (ENSMSIG00000024431) #27	Atcay (ENSMSIG00000024422) #28	Zfr2 (ENSMSIG00000024392) #29	Matk (ENSMSIG00000024338) #30	ENSMSIG00000024325 #32	Apba3 (ENSMSIG00000024307) #33	Tjp3 (ENSMSIG00000024242) #34	Pip5k1c (ENSMSIG00000024074) #35	Cactin (ENSMSIG00000024042) #36	Tbxa2r (ENSMSIG00000024021) #37	Gipc3 (ENSMSIG00000024007)
Ryukyu mouse	MODERN SPECIES	1	Jsrp1 (MGP_CAROLIEiJ_G0015604)	MGP_CAROLIEiJ_G0015605	Lingo3 (MGP_CAROLIEiJ_G0015606)	Lsm7 (MGP_CAROLIEiJ_G0015607)	Sppl2b (MGP_CAROLIEiJ_G0015608)	Tmprss9 (MGP_CAROLIEiJ_G0015609)	Timm13 (MGP_CAROLIEiJ_G0015610)	Lmnb2 (MGP_CAROLIEiJ_G0015611)	Gadd45b (MGP_CAROLIEiJ_G0015612)	Gng7 (MGP_CAROLIEiJ_G0015613)	Diras1 (MGP_CAROLIEiJ_G0015614)	Slc39a3 (MGP_CAROLIEiJ_G0015615)	Sgta (MGP_CAROLIEiJ_G0015616)	Thop1 (MGP_CAROLIEiJ_G0015617)	Creb3l3 (MGP_CAROLIEiJ_G0015618) #21	Map2k2 (MGP_CAROLIEiJ_G0015619) #22	Zbtb7a (MGP_CAROLIEiJ_G0015620) #23	Pias4 (MGP_CAROLIEiJ_G0015621) #24	Eef2 (MGP_CAROLIEiJ_G0015622) #25	MGP_CAROLIEiJ_G0015623	Dapk3 (MGP_CAROLIEiJ_G0015624) #26	Nmrk2 (MGP_CAROLIEiJ_G0015625) #27	Atcay (MGP_CAROLIEiJ_G0015626) #28	Zfr2 (MGP_CAROLIEiJ_G0015627) #29	Matk (MGP_CAROLIEiJ_G0015628) #30	Mrpl54 (MGP_CAROLIEiJ_G0015629) #32	Apba3 (MGP_CAROLIEiJ_G0015630) #33	Tjp3 (MGP_CAROLIEiJ_G0015631) #34	Pip5k1c (MGP_CAROLIEiJ_G0015632) #35	Cactin (MGP_CAROLIEiJ_G0015633) #36	Tbxa2r (MGP_CAROLIEiJ_G0015634) #37
Shrew mouse	MODERN SPECIES	22	Jsrp1 (MGP_PahariEiJ_G0031017)	MGP_PahariEiJ_G0031018	Lingo3 (MGP_PahariEiJ_G0031019)	Lsm7 (MGP_PahariEiJ_G0031020)	Sppl2b (MGP_PahariEiJ_G0031021)	Tmprss9 (MGP_PahariEiJ_G0031022)	Timm13 (MGP_PahariEiJ_G0031023)	Lmnb2 (MGP_PahariEiJ_G0031024)	Gadd45b (MGP_PahariEiJ_G0031025)	Gng7 (MGP_PahariEiJ_G0031026)	Diras1 (MGP_PahariEiJ_G0031027)	Slc39a3 (MGP_PahariEiJ_G0031028)	Sgta (MGP_PahariEiJ_G0031029)	Thop1 (MGP_PahariEiJ_G0031030)	Creb3l3 (MGP_PahariEiJ_G0031031) #21	Map2k2 (MGP_PahariEiJ_G0031032) #22	Zbtb7a (MGP_PahariEiJ_G0031033) #23	Pias4 (MGP_PahariEiJ_G0031034) #24	Eef2 (MGP_PahariEiJ_G0031035) #25	MGP_PahariEiJ_G0031036	Dapk3 (MGP_PahariEiJ_G0031037) #26	Nmrk2 (MGP_PahariEiJ_G0031038) #27	Atcay (MGP_PahariEiJ_G0031039) #28	Zfr2 (MGP_PahariEiJ_G0031040) #29	Matk (MGP_PahariEiJ_G0031041) #30	Mrpl54 (MGP_PahariEiJ_G0031042) #32	Apba3 (MGP_PahariEiJ_G0031043) #33	Tjp3 (MGP_PahariEiJ_G0031044) #34	Pip5k1c (MGP_PahariEiJ_G0031045) #35	Cactin (MGP_PahariEiJ_G0031046) #36	Tbxa2r (MGP_PahariEiJ_G0031047) #37
Rat	MODERN SPECIES	17	Sf3a2 (ENSRNOG00000019349)	Amh (ENSRNOG00000019377)	Jsrp1 (ENSRNOG00000032951)	Oaz1 (ENSRNOG00000019459)	Lingo3 (ENSRNOG00000032569)	Lsm7 (ENSRNOG00000019552)	Sppl2b (ENSRNOG00000057881)	Tmprss9 (ENSRNOG00000032429)	Lmnb2 (ENSRNOG00000025742)	Gadd45b (ENSRNOG00000019822)	Diras1 (ENSRNOG00000029738)	Slc39a3 (ENSRNOG00000045524)	Sgta (ENSRNOG00000019891)	Thop1 (ENSRNOG00000019924)	Creb3l3 (ENSRNOG00000032202) #21	Map2k2 (ENSRNOG00000020005) #22	Zbtb7a (ENSRNOG00000020161) #23	Pias4 (ENSRNOG00000020230) #24	Eef2 (ENSRNOG00000020266) #25	Dapk3 (ENSRNOG00000020383) #26	Nmrk2 (ENSRNOG00000042897) #27	Atcay (ENSRNOG00000020407) #28	Zfr2 (ENSRNOG00000020416) #29	Matk (ENSRNOG00000020431) #30	Mrpl54 (ENSRNOG00000020464) #32	Apba3 (ENSRNOG00000020466) #33	Tjp3 (ENSRNOG00000020501) #34	Pip5k1c (ENSRNOG00000020577) #35	Cactin (ENSRNOG00000039852) #36	Tbxa2r (ENSRNOG00000020585) #37	Hmg20b (ENSRNOG00000020601)
Upper Galilee mountains blind mole rat	MODERN SPECIES	975	Jsrp1 (ENSNGAG00000023304)	ENSNGAG00000021735	Lingo3 (ENSNGAG00000021849)	Lsm7 (ENSNGAG00000021637)	Sppl2b (ENSNGAG00000004736)	Tmprss9 (ENSNGAG00000022790)	Timm13 (ENSNGAG00000023249)	Lmnb2 (ENSNGAG00000021462)	Gadd45b (ENSNGAG00000021952)	Gng7 (ENSNGAG00000020927)	Diras1 (ENSNGAG00000023268)	Slc39a3 (ENSNGAG00000021304)	Sgta (ENSNGAG00000014219)	Thop1 (ENSNGAG00000022879)	Creb3l3 (ENSNGAG00000021009) #21	Map2k2 (ENSNGAG00000023259) #22	Zbtb7a (ENSNGAG00000021628) #23	Pias4 (ENSNGAG00000023389) #24	Eef2 (ENSNGAG00000001879) #25	Dapk3 (ENSNGAG00000020954) #26	Nmrk2 (ENSNGAG00000020749) #27	Atcay (ENSNGAG00000022622) #28	Zfr2 (ENSNGAG00000021831) #29	Matk (ENSNGAG00000021707) #30	Mrpl54 (ENSNGAG00000021044) #32	Apba3 (ENSNGAG00000022342) #33	Tjp3 (ENSNGAG00000001234) #34	Pip5k1c (ENSNGAG00000021521) #35	Cactin (ENSNGAG00000020699) #36	Tbxa2r (ENSNGAG00000023199) #37	Gipc3 (ENSNGAG00000022438)
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	55	ENSJJAG00000022160	Oaz1 (ENSJJAG00000005334)	Lingo3 (ENSJJAG00000012763)	Lsm7 (ENSJJAG00000001936)	Sppl2b (ENSJJAG00000014592)	Tmprss9 (ENSJJAG00000022597)	Timm13 (ENSJJAG00000021811)	Lmnb2 (ENSJJAG00000023416)	Gadd45b (ENSJJAG00000020166)	Gng7 (ENSJJAG00000022350)	Diras1 (ENSJJAG00000012843)	Slc39a3 (ENSJJAG00000014409)	ENSJJAG00000018418	Thop1 (ENSJJAG00000007816)	Creb3l3 (ENSJJAG00000019067) #21	ENSJJAG00000016736 #22	Zbtb7a (ENSJJAG00000006307) #23	Pias4 (ENSJJAG00000012061) #24	Eef2 (ENSJJAG00000017122) #25	Nmrk2 (ENSJJAG00000000373) #27	Atcay (ENSJJAG00000007757) #28	Zfr2 (ENSJJAG00000014635) #29	Matk (ENSJJAG00000017018) #30	Mrpl54 (ENSJJAG00000020405) #32	Apba3 (ENSJJAG00000013868) #33	Tjp3 (ENSJJAG00000020883) #34	Pip5k1c (ENSJJAG00000014211) #35	Cactin (ENSJJAG00000021015) #36	Tbxa2r (ENSJJAG00000015378) #37	Hmg20b (ENSJJAG00000014863)	Mfsd12 (ENSJJAG00000023170)
Lesser Egyptian jerboa	MODERN SPECIES	80	ENSJJAG00000021614	Pja1 (ENSJJAG00000013566)	Nalf2 (ENSJJAG00000015886)	ENSJJAG00000018615	Eda (ENSJJAG00000022345)	Awat2 (ENSJJAG00000012159)	Igbp1 (ENSJJAG00000012275)	Dgat2l6 (ENSJJAG00000008254)	Awat1 (ENSJJAG00000023743)	P2ry4 (ENSJJAG00000019687)	ENSJJAG00000023597	Pdzd11 (ENSJJAG00000020264)	Kif4 (ENSJJAG00000000294)	Gdpd2 (ENSJJAG00000014781)	Dlg3 (ENSJJAG00000014971)	ENSJJAG00000016532 #22	Tex11 (ENSJJAG00000018454)	Slc7a3 (ENSJJAG00000019367)	ENSJJAG00000022270	Snx12 (ENSJJAG00000018084)	Foxo4 (ENSJJAG00000013280)	Gm614 (ENSJJAG00000019595)	Il2rg (ENSJJAG00000013180)	Med12 (ENSJJAG00000011766)	Nlgn3 (ENSJJAG00000022749)	Gjb1 (ENSJJAG00000015275)	Zmym3 (ENSJJAG00000017423)	ENSJJAG00000017151	Itgb1bp2 (ENSJJAG00000022114)	Taf1 (ENSJJAG00000016231)	ENSJJAG00000016438
Kangaroo rat	MODERN SPECIES	383	Lrg1 (ENSDORG00000024968)	ENSDORG00000024106 #7	ENSDORG00000014228 #8	Ubxn6 (ENSDORG00000014226) #9	Sh3gl1 (ENSDORG00000012390) #11	Mpnd (ENSDORG00000012389) #12	Stap2 (ENSDORG00000012387) #13	Fsd1 (ENSDORG00000012386) #14	Shd (ENSDORG00000006647) #16	Yju2 (ENSDORG00000006645) #17	Ebi3 (ENSDORG00000006642) #18	ENSDORG00000006638 #19	ENSDORG00000027304	Sirt6 (ENSDORG00000003338) #20	Creb3l3 (ENSDORG00000003335) #21	Map2k2 (ENSDORG00000001269) #22	Zbtb7a (ENSDORG00000002712) #23	Pias4 (ENSDORG00000002710) #24	Eef2 (ENSDORG00000012229) #25	ENSDORG00000012226	Atcay (ENSDORG00000000661) #28	Lsm7 (ENSDORG00000024460)	Sppl2b (ENSDORG00000004034)	Tmprss9 (ENSDORG00000002599)	Timm13 (ENSDORG00000015661)	Lmnb2 (ENSDORG00000002602)	Gadd45b (ENSDORG00000025421)	Gng7 (ENSDORG00000001766)	Diras1 (ENSDORG00000006599)	Slc39a3 (ENSDORG00000029412)	Sgta (ENSDORG00000009907)
Tree shrew	MODERN SPECIES	1177																ENSTBEG00000014036 #22
Laurasiatheria	ANCESTRAL SPECIES	15	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT01000000215054	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT00520000060565
Laurasiatheria_a	ANCESTRAL SPECIES	19	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT01000000215054	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT00520000060565
Laurasiatheria_b	ANCESTRAL SPECIES	18	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT00520000060565
Carnivora	ANCESTRAL SPECIES	6	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37	ENSGT00730000111899
Felidae	ANCESTRAL SPECIES	21	ENSGT00950000182920.b.a.a.c.b ##7	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37	ENSGT00730000111899
Panthera	ANCESTRAL SPECIES	15	ENSGT00950000182920.b.a.a.c.b ##7	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37	ENSGT00730000111899
Tiger	MODERN SPECIES	54	MYDGF (ENSPTIG00000011948)	ENSPTIG00000013782	LRG1 (ENSPTIG00000014671)	PLIN5 (ENSPTIG00000015119) ##7	ENSPTIG00000016159 #8	CHAF1A (ENSPTIG00000017273) #10	ENSPTIG00000018467 #11	MPND (ENSPTIG00000018724) #12	STAP2 (ENSPTIG00000020894) #13	SHD (ENSPTIG00000021704) #16	YJU2 (ENSPTIG00000021858) #17	EBI3 (ENSPTIG00000021918) #18	ANKRD24 (ENSPTIG00000021988) #19	SIRT6 (ENSPTIG00000006083) #20	CREB3L3 (ENSPTIG00000008650) #21	MAP2K2 (ENSPTIG00000010880) #22	PIAS4 (ENSPTIG00000012378) #24	EEF2 (ENSPTIG00000012837) #25	ATCAY (ENSPTIG00000013063) #28	ENSPTIG00000015790 #30	MRPL54 (ENSPTIG00000017727) #32	PIP5K1C (ENSPTIG00000018042) #35	GIPC3 (ENSPTIG00000020400)	HMG20B (ENSPTIG00000021062)	FZR1 (ENSPTIG00000021304)	SMIM24 (ENSPTIG00000021624)	NFIC (ENSPTIG00000021743)	CELF5 (ENSPTIG00000005338)	GNA15 (ENSPTIG00000006851)	ENSPTIG00000007808	ENSPTIG00000008105
Panthera_a	ANCESTRAL SPECIES		ENSGT00950000182920.b.a.a.c.b ##7	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37	ENSGT00730000111899
lion	MODERN SPECIES	236	LRG1 (ENSPLOG00000020688)	PLIN5 (ENSPLOG00000020711) ##7	HDGFL2 (ENSPLOG00000020735) #8	UBXN6 (ENSPLOG00000020762) #9	CHAF1A (ENSPLOG00000020794) #10	SH3GL1 (ENSPLOG00000020865) #11	MPND (ENSPLOG00000020952) #12	STAP2 (ENSPLOG00000021151) #13	FSD1 (ENSPLOG00000021212) #14	SHD (ENSPLOG00000021324) #16	YJU2 (ENSPLOG00000021362) #17	EBI3 (ENSPLOG00000021391) #18	ANKRD24 (ENSPLOG00000021414) #19	SIRT6 (ENSPLOG00000021479) #20	CREB3L3 (ENSPLOG00000021514) #21	MAP2K2 (ENSPLOG00000021607) #22
leopard	MODERN SPECIES	134	PLIN5 (ENSPPRG00000018474) ##7	PLIN4 (ENSPPRG00000016994) #7	HDGFL2 (ENSPPRG00000016137) #8	UBXN6 (ENSPPRG00000013698) #9	CHAF1A (ENSPPRG00000013271) #10	SH3GL1 (ENSPPRG00000012445) #11	MPND (ENSPPRG00000010341) #12	STAP2 (ENSPPRG00000008724) #13	FSD1 (ENSPPRG00000007977) #14	SHD (ENSPPRG00000007526) #16	YJU2 (ENSPPRG00000007225) #17	EBI3 (ENSPPRG00000007004) #18	ANKRD24 (ENSPPRG00000006734) #19	ENSPPRG00000005149 #20	CREB3L3 (ENSPPRG00000004717) #21	MAP2K2 (ENSPPRG00000003088) #22	ZBTB7A (ENSPPRG00000002971) #23	PIAS4 (ENSPPRG00000002907) #24	EEF2 (ENSPPRG00000002841) #25	DAPK3 (ENSPPRG00000002025) #26	ATCAY (ENSPPRG00000001356) #28	ZFR2 (ENSPPRG00000000527) #29	MATK (ENSPPRG00000017992) #30	RAX2 (ENSPPRG00000012460) #31	MRPL54 (ENSPPRG00000012325) #32	APBA3 (ENSPPRG00000012058) #33	TJP3 (ENSPPRG00000011837) #34	PIP5K1C (ENSPPRG00000010065) #35	CACTIN (ENSPPRG00000007007) #36	TBXA2R (ENSPPRG00000006108) #37	GIPC3 (ENSPPRG00000006047)
Cat	MODERN SPECIES	1	LRG1 (ENSFCAG00000045420)	PLIN5 (ENSFCAG00000018948) ##7	HDGFL2 (ENSFCAG00000006283) #8	UBXN6 (ENSFCAG00000027049) #9	CHAF1A (ENSFCAG00000014158) #10	SH3GL1 (ENSFCAG00000025662) #11	MPND (ENSFCAG00000019038) #12	STAP2 (ENSFCAG00000021949) #13	FSD1 (ENSFCAG00000014156) #14	SHD (ENSFCAG00000014152) #16	YJU2 (ENSFCAG00000014150) #17	EBI3 (ENSFCAG00000014148) #18	ANKRD24 (ENSFCAG00000029510) #19	SIRT6 (ENSFCAG00000014140) #20	CREB3L3 (ENSFCAG00000014139) #21	MAP2K2 (ENSFCAG00000014137) #22	ZBTB7A (ENSFCAG00000045801) #23	PIAS4 (ENSFCAG00000018666) #24	EEF2 (ENSFCAG00000000909) #25	DAPK3 (ENSFCAG00000013501) #26	ATCAY (ENSFCAG00000013498) #28	ZFR2 (ENSFCAG00000007145) #29	MATK (ENSFCAG00000026653) #30	RAX2 (ENSFCAG00000040863) #31	MRPL54 (ENSFCAG00000007144) #32	APBA3 (ENSFCAG00000019172) #33	TJP3 (ENSFCAG00000007142) #34	PIP5K1C (ENSFCAG00000007139) #35	CACTIN (ENSFCAG00000023235) #36	TBXA2R (ENSFCAG00000012120) #37	ENSFCAG00000051232
Caniformia	ANCESTRAL SPECIES	4	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37	ENSGT00730000111899
Canidae	ANCESTRAL SPECIES		ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37	ENSGT00730000111899
Red fox	MODERN SPECIES	163	PLIN4 (ENSVVUG00000008610) #7	HDGFL2 (ENSVVUG00000008590) #8	UBXN6 (ENSVVUG00000008372) #9	CHAF1A (ENSVVUG00000008352) #10	SH3GL1 (ENSVVUG00000008332) #11	MPND (ENSVVUG00000008330) #12	STAP2 (ENSVVUG00000008284) #13	FSD1 (ENSVVUG00000008262) #14	ENSVVUG00000008258 #15	SHD (ENSVVUG00000008254) #16	YJU2 (ENSVVUG00000008249) #17	EBI3 (ENSVVUG00000008242) #18	ANKRD24 (ENSVVUG00000008223) #19	SIRT6 (ENSVVUG00000008210) #20	CREB3L3 (ENSVVUG00000008198) #21	MAP2K2 (ENSVVUG00000008089) #22	PIAS4 (ENSVVUG00000008067) #24	EEF2 (ENSVVUG00000004661) #25	DAPK3 (ENSVVUG00000004576) #26	ATCAY (ENSVVUG00000004561) #28	ZFR2 (ENSVVUG00000004526) #29	MATK (ENSVVUG00000004432) #30	RAX2 (ENSVVUG00000004425) #31	MRPL54 (ENSVVUG00000004420) #32	APBA3 (ENSVVUG00000004405) #33	TJP3 (ENSVVUG00000003419) #34	PIP5K1C (ENSVVUG00000003369) #35	CACTIN (ENSVVUG00000003362) #36	TBXA2R (ENSVVUG00000003357) #37	GIPC3 (ENSVVUG00000003327)	HMG20B (ENSVVUG00000003300)
Canis_lupus	ANCESTRAL SPECIES	1	ENSGT00950000182920.b.a.a.c.b ##7	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662.y #25	ENSGT00940000161753 #26	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37	ENSGT00730000111899
Dingo	MODERN SPECIES	112	PLIN5 (ENSCAFG00020018636) ##7	PLIN4 (ENSCAFG00020018631) #7	HDGFL2 (ENSCAFG00020018626) #8	UBXN6 (ENSCAFG00020018624) #9	CHAF1A (ENSCAFG00020018600) #10	SH3GL1 (ENSCAFG00020018591) #11	MPND (ENSCAFG00020018538) #12	STAP2 (ENSCAFG00020018528) #13	FSD1 (ENSCAFG00020018523) #14	SHD (ENSCAFG00020018520) #16	YJU2 (ENSCAFG00020018512) #17	EBI3 (ENSCAFG00020018510) #18	ANKRD24 (ENSCAFG00020018503) #19	SIRT6 (ENSCAFG00020018493) #20	CREB3L3 (ENSCAFG00020018486) #21	MAP2K2 (ENSCAFG00020018484) #22	ZBTB7A (ENSCAFG00020018481) #23	PIAS4 (ENSCAFG00020018476) #24	ENSCAFG00020018386 #25	DAPK3 (ENSCAFG00020018374) #26	ENSCAFG00020018372	ATCAY (ENSCAFG00020018366) #28	ZFR2 (ENSCAFG00020018341) #29	MATK (ENSCAFG00020018336) #30	RAX2 (ENSCAFG00020018334) #31	MRPL54 (ENSCAFG00020018333) #32	APBA3 (ENSCAFG00020018330) #33	TJP3 (ENSCAFG00020018326) #34	PIP5K1C (ENSCAFG00020018324) #35	CACTIN (ENSCAFG00020018320) #36	TBXA2R (ENSCAFG00020018318) #37
Dog	MODERN SPECIES	12	PLIN4 (ENSCAFG00845014617) #7	UBXN6 (ENSCAFG00845014671) #9	CHAF1A (ENSCAFG00845014711) #10	SH3GL1 (ENSCAFG00845014754) #11	MPND (ENSCAFG00845014863) #12	STAP2 (ENSCAFG00845015051) #13	FSD1 (ENSCAFG00845015189) #14	ENSCAFG00845006126	ENSCAFG00845006143	SHD (ENSCAFG00845006173) #16	YJU2 (ENSCAFG00845006213) #17	EBI3 (ENSCAFG00845006245) #18	ANKRD24 (ENSCAFG00845006318) #19	SIRT6 (ENSCAFG00845006500) #20	CREB3L3 (ENSCAFG00845006598) #21	MAP2K2 (ENSCAFG00845006651) #22	ZBTB7A (ENSCAFG00845006749) #23	PIAS4 (ENSCAFG00845006856) #24	EEF2 (ENSCAFG00845007003) #25	DAPK3 (ENSCAFG00845007165) #26	ATCAY (ENSCAFG00845007239) #28	ENSCAFG00845007313	ZFR2 (ENSCAFG00845007434) #29	MATK (ENSCAFG00845007724) #30	RAX2 (ENSCAFG00845008002) #31	MRPL54 (ENSCAFG00845008032) #32	APBA3 (ENSCAFG00845008066) #33	TJP3 (ENSCAFG00845008169) #34	PIP5K1C (ENSCAFG00845008444) #35	CACTIN (ENSCAFG00845008863) #36	TBXA2R (ENSCAFG00845008905) #37
Caniformia_b	ANCESTRAL SPECIES	23	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37	ENSGT00730000111899
Mustelinae	ANCESTRAL SPECIES	19	ENSGT00950000182920.b.a.a.c.b ##7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000158364 #28	ENSGT00940000162148.w #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37	ENSGT00390000003420.b
Ferret	MODERN SPECIES	326	ENSMPUG00000005096 ##7	HDGFL2 (ENSMPUG00000005082) #8	UBXN6 (ENSMPUG00000005027) #9	CHAF1A (ENSMPUG00000005021) #10	SH3GL1 (ENSMPUG00000005005) #11	MPND (ENSMPUG00000004955) #12	STAP2 (ENSMPUG00000004944) #13	FSD1 (ENSMPUG00000004929) #14	ENSMPUG00000004926 #15	SHD (ENSMPUG00000004914) #16	YJU2 (ENSMPUG00000004906) #17	EBI3 (ENSMPUG00000004891) #18	ANKRD24 (ENSMPUG00000004751) #19	SIRT6 (ENSMPUG00000004740) #20	CREB3L3 (ENSMPUG00000004723) #21	MAP2K2 (ENSMPUG00000004715) #22	ZBTB7A (ENSMPUG00000004703) #23	PIAS4 (ENSMPUG00000004495) #24	EEF2 (ENSMPUG00000004478) #25	DAPK3 (ENSMPUG00000004467) #26	ATCAY (ENSMPUG00000004453) #28	ENSMPUG00000004305 #29	MATK (ENSMPUG00000004170) #30	MRPL54 (ENSMPUG00000004155) #32	APBA3 (ENSMPUG00000004145) #33	TJP3 (ENSMPUG00000004062) #34	PIP5K1C (ENSMPUG00000004050) #35	CACTIN (ENSMPUG00000004036) #36	TBXA2R (ENSMPUG00000004032) #37	GIPC3 (ENSMPUG00000003985)	HMG20B (ENSMPUG00000003925)
American mink	MODERN SPECIES	175	A2GL (ENSNVIG00000008012)	PLIN5 (ENSNVIG00000007989) ##7	HDGFL2 (ENSNVIG00000007923) #8	UBXN6 (ENSNVIG00000007893) #9	CHAF1A (ENSNVIG00000007855) #10	SH3GL1 (ENSNVIG00000007791) #11	MPND (ENSNVIG00000007709) #12	STAP2 (ENSNVIG00000007652) #13	FSD1 (ENSNVIG00000007558) #14	SHD (ENSNVIG00000007523) #16	YJU2 (ENSNVIG00000007508) #17	EBI3 (ENSNVIG00000007465) #18	ANKRD24 (ENSNVIG00000007410) #19	SIRT6 (ENSNVIG00000007366) #20	CREB3L3 (ENSNVIG00000007350) #21	MAP2K2 (ENSNVIG00000007322) #22	ZBTB7A (ENSNVIG00000007312) #23	PIAS4 (ENSNVIG00000007291) #24	EEF2 (ENSNVIG00000007264) #25	DAPK3 (ENSNVIG00000007242) #26	ATCAY (ENSNVIG00000007200) #28	ZFR2 (ENSNVIG00000007143) #29	MATK (ENSNVIG00000006982) #30	RAX2 (ENSNVIG00000006966) #31	MRPL54 (ENSNVIG00000006941) #32	APBA3 (ENSNVIG00000006915) #33	TJP3 (ENSNVIG00000006858) #34	PIP5K1C (ENSNVIG00000006640) #35	CACTIN (ENSNVIG00000006539) #36	TBXA2R (ENSNVIG00000006523) #37	GIPC3 (ENSNVIG00000006504)
Ursidae	ANCESTRAL SPECIES	20	ENSGT00950000182920.b.a.a.c.a.b.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37	ENSGT00730000111899
Giant Panda	MODERN SPECIES	14	PLIN5 (ENSAMEG00000001928) ##7	PLIN4 (ENSAMEG00000001943) #7	HDGFL2 (ENSAMEG00000001946) #8	UBXN6 (ENSAMEG00000001974) #9	CHAF1A (ENSAMEG00000002002) #10	SH3GL1 (ENSAMEG00000002020) #11	MPND (ENSAMEG00000002047) #12	FSD1 (ENSAMEG00000002072) #14	TMIGD2 (ENSAMEG00000002105) #15	SHD (ENSAMEG00000002106) #16	YJU2 (ENSAMEG00000002124) #17	ENSAMEG00000028708 #18	ANKRD24 (ENSAMEG00000002152) #19	SIRT6 (ENSAMEG00000002180) #20	CREB3L3 (ENSAMEG00000002199) #21	MAP2K2 (ENSAMEG00000002212) #22	ZBTB7A (ENSAMEG00000026266) #23	PIAS4 (ENSAMEG00000002251) #24	EEF2 (ENSAMEG00000002286) #25	DAPK3 (ENSAMEG00000006056) #26	ATCAY (ENSAMEG00000006007) #28	ZFR2 (ENSAMEG00000005974) #29	MATK (ENSAMEG00000005916) #30	RAX2 (ENSAMEG00000005914) #31	MRPL54 (ENSAMEG00000028994) #32	APBA3 (ENSAMEG00000005876) #33	TJP3 (ENSAMEG00000005786) #34	PIP5K1C (ENSAMEG00000005756) #35	CACTIN (ENSAMEG00000005743) #36	TBXA2R (ENSAMEG00000005733) #37	ENSAMEG00000028252
Ursus	ANCESTRAL SPECIES	16	ENSGT00950000182920.b.a.a.c.a.b.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000158364 #28	ENSGT00940000167684	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37
American black bear	MODERN SPECIES	1206																MAP2K2 (ENSUAMG00000022381) #22	ZBTB7A (ENSUAMG00000022382) #23	PIAS4 (ENSUAMG00000022383) #24	EEF2 (ENSUAMG00000022409) #25	DAPK3 (ENSUAMG00000023932) #26	ATCAY (ENSUAMG00000023933) #28	ENSUAMG00000023935
Polar bear	MODERN SPECIES	455	HDGFL2 (ENSUMAG00000007753) #8	UBXN6 (ENSUMAG00000007739) #9	CHAF1A (ENSUMAG00000007691) #10	SH3GL1 (ENSUMAG00000007676) #11	MPND (ENSUMAG00000007663) #12	STAP2 (ENSUMAG00000007652) #13	FSD1 (ENSUMAG00000007632) #14	ENSUMAG00000007621 #15	SHD (ENSUMAG00000007615) #16	ENSUMAG00000007611	YJU2 (ENSUMAG00000007607) #17	ENSUMAG00000007603 #18	ENSUMAG00000007602 #19	SIRT6 (ENSUMAG00000007575) #20	CREB3L3 (ENSUMAG00000007566) #21	ENSUMAG00000007513 #22	PIAS4 (ENSUMAG00000007484) #24	EEF2 (ENSUMAG00000007474) #25	ENSUMAG00000007459	ATCAY (ENSUMAG00000007452) #28	ENSUMAG00000007447	ENSUMAG00000007440 #29	MATK (ENSUMAG00000007427) #30	ENSUMAG00000007421	MRPL54 (ENSUMAG00000007416) #32	PIP5K1C (ENSUMAG00000007390) #35	ENSUMAG00000007385 #36	ENSUMAG00000007383	ENSUMAG00000007381	MFSD12 (ENSUMAG00000007358)	TEKTIP1 (ENSUMAG00000007354)
Laurasiatheria_c	ANCESTRAL SPECIES	16	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT00520000060565
Chiroptera	ANCESTRAL SPECIES	31	ENSGT00950000182920.b.a.a.c.b ##7	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37
Microchiroptera	ANCESTRAL SPECIES	30	ENSGT00950000182920.b.a.a.c.b ##7	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00960000192381	ENSGT00940000159004 #16	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37
Greater horseshoe bat	MODERN SPECIES	9	PLIN4 (ENSRFEG00010018695) #7	HDGFL2 (ENSRFEG00010018715) #8	ENSRFEG00010018772	UBXN6 (ENSRFEG00010018790) #9	CHAF1A (ENSRFEG00010018850) #10	SH3GL1 (ENSRFEG00010018888) #11	MPND (ENSRFEG00010018966) #12	STAP2 (ENSRFEG00010019155) #13	FSD1 (ENSRFEG00010019207) #14	ENSRFEG00010019258	SHD (ENSRFEG00010019283) #16	EBI3 (ENSRFEG00010019381) #18	ANKRD24 (ENSRFEG00010019433) #19	SIRT6 (ENSRFEG00010019622) #20	CREB3L3 (ENSRFEG00010019660) #21	MAP2K2 (ENSRFEG00010019724) #22	ENSRFEG00010019770	ZBTB7A (ENSRFEG00010019791) #23	PIAS4 (ENSRFEG00010019828) #24	EEF2 (ENSRFEG00010019895) #25	DAPK3 (ENSRFEG00010020027) #26	NMRK2 (ENSRFEG00010020068) #27	ATCAY (ENSRFEG00010020101) #28	ZFR2 (ENSRFEG00010020171) #29	MATK (ENSRFEG00010020199) #30	RAX2 (ENSRFEG00010020350) #31	MRPL54 (ENSRFEG00010020373) #32	APBA3 (ENSRFEG00010020395) #33	TJP3 (ENSRFEG00010020437) #34	PIP5K1C (ENSRFEG00010020492) #35	CACTIN (ENSRFEG00010020557) #36
Microbat	MODERN SPECIES	1657												EBI3 (ENSMLUG00000008782) #18	ANKRD24 (ENSMLUG00000008742) #19	SIRT6 (ENSMLUG00000008726) #20	CREB3L3 (ENSMLUG00000008703) #21	MAP2K2 (ENSMLUG00000008679) #22	ZBTB7A (ENSMLUG00000008667) #23	PIAS4 (ENSMLUG00000008650) #24	ENSMLUG00000014241 #25	DAPK3 (ENSMLUG00000006239) #26	NMRK2 (ENSMLUG00000016715) #27	ATCAY (ENSMLUG00000003760) #28
Megabat	MODERN SPECIES	387																MAP2K2 (ENSPVAG00000002678) #22
Equus	ANCESTRAL SPECIES	34	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT00520000060565
Horse	MODERN SPECIES	28	PLIN4 (ENSECAG00000035223) #7	HDGFL2 (ENSECAG00000028686) #8	UBXN6 (ENSECAG00000021994) #9	CHAF1A (ENSECAG00000014377) #10	SH3GL1 (ENSECAG00000024773) #11	MPND (ENSECAG00000029898) #12	STAP2 (ENSECAG00000030351) #13	FSD1 (ENSECAG00000046915) #14	TMIGD2 (ENSECAG00000011606) #15	SHD (ENSECAG00000005602) #16	YJU2 (ENSECAG00000022785) #17	EBI3 (ENSECAG00000018667) #18	ANKRD24 (ENSECAG00000016048) #19	SIRT6 (ENSECAG00000015304) #20	CREB3L3 (ENSECAG00000015101) #21	MAP2K2 (ENSECAG00000009157) #22	ZBTB7A (ENSECAG00000040226) #23	PIAS4 (ENSECAG00000018697) #24	EEF2 (ENSECAG00000020547) #25	DAPK3 (ENSECAG00000012570) #26	NMRK2 (ENSECAG00000022841) #27	ATCAY (ENSECAG00000015094) #28	ZFR2 (ENSECAG00000007090) #29	MATK (ENSECAG00000057591) #30	RAX2 (ENSECAG00000027953) #31	TJP3 (ENSECAG00000011885) #34	APBA3 (ENSECAG00000021308) #33	PIP5K1C (ENSECAG00000033728) #35	CACTIN (ENSECAG00000039454) #36	ENSECAG00000051988	TBXA2R (ENSECAG00000038039) #37
Donkey	MODERN SPECIES	12	ENSEASG00005024727 #7	HDGFL2 (ENSEASG00005022459) #8	UBXN6 (ENSEASG00005022450) #9	CHAF1A (ENSEASG00005022431) #10	SH3GL1 (ENSEASG00005022411) #11	MPND (ENSEASG00005022406) #12	STAP2 (ENSEASG00005024518) #13	FSD1 (ENSEASG00005022397) #14	ENSEASG00005025910	SHD (ENSEASG00005022388) #16	YJU2 (ENSEASG00005022383) #17	EBI3 (ENSEASG00005022379) #18	ANKRD24 (ENSEASG00005038678) #19	SIRT6 (ENSEASG00005022360) #20	CREB3L3 (ENSEASG00005022352) #21	ENSEASG00005025779 #22	ZBTB7A (ENSEASG00005032317) #23	PIAS4 (ENSEASG00005022327) #24	EEF2 (ENSEASG00005022311) #25	DAPK3 (ENSEASG00005022305) #26	NMRK2 (ENSEASG00005031157) #27	ATCAY (ENSEASG00005028112) #28	ZFR2 (ENSEASG00005022296) #29	MATK (ENSEASG00005022288) #30	RAX2 (ENSEASG00005026320) #31	MRPL54 (ENSEASG00005022283) #32	APBA3 (ENSEASG00005022276) #33	TJP3 (ENSEASG00005022268) #34	PIP5K1C (ENSEASG00005022261) #35	CACTIN (ENSEASG00005030573) #36	TBXA2R (ENSEASG00005022250) #37
Artiodactyla	ANCESTRAL SPECIES	23	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT01000000215054	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT00520000060565
Suina	ANCESTRAL SPECIES	16	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37
Pig	MODERN SPECIES	10	PLIN4 (ENSSSCG00000013512) #7	HDGFL2 (ENSSSCG00000013511) #8	UBXN6 (ENSSSCG00000013510) #9	CHAF1A (ENSSSCG00000013509) #10	SH3GL1 (ENSSSCG00000013508) #11	MPND (ENSSSCG00000013507) #12	STAP2 (ENSSSCG00000013506) #13	FSD1 (ENSSSCG00000013505) #14	TMIGD2 (ENSSSCG00000052810) #15	SHD (ENSSSCG00000013503) #16	YJU2 (ENSSSCG00000013499) #17	EBI3 (ENSSSCG00000013498) #18	ANKRD24 (ENSSSCG00000013497) #19	SIRT6 (ENSSSCG00000013496) #20	CREB3L3 (ENSSSCG00000013501) #21	MAP2K2 (ENSSSCG00000027127) #22	ZBTB7A (ENSSSCG00000029236) #23	PIAS4 (ENSSSCG00000022066) #24	ENSSSCG00000050591	EEF2 (ENSSSCG00000025675) #25	DAPK3 (ENSSSCG00000032170) #26	NMRK2 (ENSSSCG00000040860) #27	ATCAY (ENSSSCG00000026754) #28	ZFR2 (ENSSSCG00000013495) #29	MATK (ENSSSCG00000013494) #30	RAX2 (ENSSSCG00000032429) #31	MRPL54 (ENSSSCG00000024242) #32	APBA3 (ENSSSCG00000013492) #33	TJP3 (ENSSSCG00000013491) #34	PIP5K1C (ENSSSCG00000013490) #35	ENSSSCG00000050486
Chacoan peccary	MODERN SPECIES	770	HDGFL2 (ENSCWAG00000014443) #8	UBXN6 (ENSCWAG00000014385) #9	ENSCWAG00000014343	CHAF1A (ENSCWAG00000014211) #10	SH3GL1 (ENSCWAG00000014104) #11	MPND (ENSCWAG00000014062) #12	STAP2 (ENSCWAG00000013947) #13	FSD1 (ENSCWAG00000013697) #14	ENSCWAG00000013636	SHD (ENSCWAG00000013499) #16	YJU2 (ENSCWAG00000013462) #17	EBI3 (ENSCWAG00000013400) #18	ANKRD24 (ENSCWAG00000013213) #19	SIRT6 (ENSCWAG00000013156) #20	CREB3L3 (ENSCWAG00000012936) #21	MAP2K2 (ENSCWAG00000012847) #22	ZBTB7A (ENSCWAG00000012798) #23	PIAS4 (ENSCWAG00000012745) #24	EEF2 (ENSCWAG00000012682) #25	DAPK3 (ENSCWAG00000012640) #26	ENSCWAG00000012584 #27	ATCAY (ENSCWAG00000012401) #28	ZFR2 (ENSCWAG00000012053) #29	MATK (ENSCWAG00000011572) #30	RAX2 (ENSCWAG00000011537) #31	MRPL54 (ENSCWAG00000011519) #32	APBA3 (ENSCWAG00000011492) #33	TJP3 (ENSCWAG00000011084) #34	PIP5K1C (ENSCWAG00000011001) #35	CACTIN (ENSCWAG00000010950) #36	TBXA2R (ENSCWAG00000010917) #37
Artiodactyla_a	ANCESTRAL SPECIES	24	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT01000000215054	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT00520000060565
Camelidae	ANCESTRAL SPECIES	36	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00960000192381	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37
Arabian camel	MODERN SPECIES	14	PLIN5 (ENSCDRG00005003696) ##7	HDGFL2 (ENSCDRG00005003845) #8	UBXN6 (ENSCDRG00005003901) #9	CHAF1A (ENSCDRG00005003943) #10	SH3GL1 (ENSCDRG00005004008) #11	MPND (ENSCDRG00005004145) #12	STAP2 (ENSCDRG00005004207) #13	FSD1 (ENSCDRG00005004266) #14	ENSCDRG00005004340	SHD (ENSCDRG00005004404) #16	YJU2 (ENSCDRG00005004442) #17	EBI3 (ENSCDRG00005004472) #18	ANKRD24 (ENSCDRG00005004507) #19	ENSCDRG00005004643 #20	CREB3L3 (ENSCDRG00005004679) #21	MAP2K2 (ENSCDRG00005004746) #22	ZBTB7A (ENSCDRG00005004798) #23	PIAS4 (ENSCDRG00005004818) #24	EEF2 (ENSCDRG00005004859) #25	DAPK3 (ENSCDRG00005004913) #26	NMRK2 (ENSCDRG00005004939) #27	ATCAY (ENSCDRG00005005006) #28	ZFR2 (ENSCDRG00005005063) #29	MATK (ENSCDRG00005005153) #30	RAX2 (ENSCDRG00005005226) #31	MRPL54 (ENSCDRG00005005240) #32	APBA3 (ENSCDRG00005005256) #33	TJP3 (ENSCDRG00005005310) #34	PIP5K1C (ENSCDRG00005005583) #35	CACTIN (ENSCDRG00005005904) #36	TBXA2R (ENSCDRG00005005933) #37
Artiodactyla_b	ANCESTRAL SPECIES	25	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT01000000215054	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT00520000060565
Cetacea	ANCESTRAL SPECIES	1	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00940000163425	ENSGT00940000162830.a.a.a	ENSGT00940000162830.a.b.a	ENSGT00940000162830.a.b.b	ENSGT01030000234519.e.a.a.b.a.a.a	ENSGT01030000234519.e.a.a.b.a.a.b.a.a
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00940000163425	ENSGT00940000162830.a.a.a	ENSGT00940000162830.a.b.a	ENSGT00940000162830.a.b.b	ENSGT01030000234519.e.a.a.b.a.a.a	ENSGT01030000234519.e.a.a.b.a.a.b.a.a
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00940000163425	ENSGT00940000162830.a.a.a	ENSGT00940000162830.a.b.a	ENSGT00940000162830.a.b.b	ENSGT01030000234519.e.a.a.b.a.a.a	ENSGT01030000234519.e.a.a.b.a.a.b.a.a.m
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00940000163425	ENSGT00940000162830.a.a.a	ENSGT00940000162830.a.b.a	ENSGT00940000162830.a.b.b	ENSGT01030000234519.e.a.a.b.a.a.a	ENSGT01030000234519.e.a.a.b.a.a.b.a.a.m
Monodontidae	ANCESTRAL SPECIES	17	ENSGT00950000182920.b.a.a.c.b ##7	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00940000163425	ENSGT00940000162830.a.a.a	ENSGT00940000162830.a.b.a	ENSGT00940000162830.a.b.b	ENSGT01030000234519.e.a.a.b.a.a.a	ENSGT01030000234519.e.a.a.b.a.a.b.a.a.m
Narwhal	MODERN SPECIES	298	PLIN5 (ENSMMNG00015003463) ##7	PLIN4 (ENSMMNG00015003425) #7	HDGFL2 (ENSMMNG00015003357) #8	UBXN6 (ENSMMNG00015003306) #9	CHAF1A (ENSMMNG00015003273) #10	SH3GL1 (ENSMMNG00015003205) #11	MPND (ENSMMNG00015003120) #12	STAP2 (ENSMMNG00015003049) #13	FSD1 (ENSMMNG00015002986) #14	SHD (ENSMMNG00015002893) #16	YJU2 (ENSMMNG00015002868) #17	EBI3 (ENSMMNG00015002848) #18	ANKRD24 (ENSMMNG00015002746) #19	SIRT6 (ENSMMNG00015002692) #20	CREB3L3 (ENSMMNG00015002644) #21	MAP2K2 (ENSMMNG00015002569) #22	ZBTB7A (ENSMMNG00015002508) #23	PIAS4 (ENSMMNG00015002478) #24	EEF2 (ENSMMNG00015002426) #25	DAPK3 (ENSMMNG00015002394) #26	ENSMMNG00015002371 #27	ATCAY (ENSMMNG00015002321) #28	ZFR2 (ENSMMNG00015002202) #29	MATK (ENSMMNG00015002087) #30	RAX2 (ENSMMNG00015002052) #31	ZNF555 (ENSMMNG00015002028)	ENSMMNG00015002004	ENSMMNG00015001988	ENSMMNG00015001966	ENSMMNG00015001925	TLE2 (ENSMMNG00015001829)
Beluga whale	MODERN SPECIES	62	PLIN5 (ENSDLEG00000020074) ##7	PLIN4 (ENSDLEG00000020078) #7	HDGFL2 (ENSDLEG00000020084) #8	UBXN6 (ENSDLEG00000020093) #9	CHAF1A (ENSDLEG00000020099) #10	SH3GL1 (ENSDLEG00000020106) #11	MPND (ENSDLEG00000020118) #12	STAP2 (ENSDLEG00000020176) #13	FSD1 (ENSDLEG00000020184) #14	SHD (ENSDLEG00000020188) #16	YJU2 (ENSDLEG00000020194) #17	EBI3 (ENSDLEG00000020198) #18	ANKRD24 (ENSDLEG00000020203) #19	SIRT6 (ENSDLEG00000020222) #20	CREB3L3 (ENSDLEG00000020225) #21	MAP2K2 (ENSDLEG00000020230) #22	ZBTB7A (ENSDLEG00000020233) #23	PIAS4 (ENSDLEG00000020241) #24	EEF2 (ENSDLEG00000020260) #25	DAPK3 (ENSDLEG00000020266) #26	NMRK2 (ENSDLEG00000020268) #27	ATCAY (ENSDLEG00000020274) #28	ZFR2 (ENSDLEG00000020297) #29	MATK (ENSDLEG00000020319) #30	RAX2 (ENSDLEG00000020322) #31	ZNF555 (ENSDLEG00000020325)	ENSDLEG00000020329	ENSDLEG00000020333	ENSDLEG00000020335	ENSDLEG00000020339	ENSDLEG00000020344
Vaquita	MODERN SPECIES	14	PLIN4 (ENSPSNG00000015258) #7	HDGFL2 (ENSPSNG00000015186) #8	UBXN6 (ENSPSNG00000015109) #9	CHAF1A (ENSPSNG00000015062) #10	SH3GL1 (ENSPSNG00000014938) #11	MPND (ENSPSNG00000014379) #12	STAP2 (ENSPSNG00000014302) #13	FSD1 (ENSPSNG00000014190) #14	TMIGD2 (ENSPSNG00000014081) #15	SHD (ENSPSNG00000013903) #16	YJU2 (ENSPSNG00000013829) #17	EBI3 (ENSPSNG00000013792) #18	ANKRD24 (ENSPSNG00000013426) #19	SIRT6 (ENSPSNG00000013319) #20	CREB3L3 (ENSPSNG00000013239) #21	MAP2K2 (ENSPSNG00000013148) #22	ZBTB7A (ENSPSNG00000013107) #23	PIAS4 (ENSPSNG00000013054) #24	EEF2 (ENSPSNG00000012974) #25	DAPK3 (ENSPSNG00000012917) #26	ENSPSNG00000012851 #27	ATCAY (ENSPSNG00000012627) #28	ZFR2 (ENSPSNG00000012279) #29	MATK (ENSPSNG00000011874) #30	RAX2 (ENSPSNG00000011818) #31	ZNF555 (ENSPSNG00000011767)	ENSPSNG00000011752	ENSPSNG00000011739	ENSPSNG00000011716	ENSPSNG00000011693	TLE6 (ENSPSNG00000011672)
Dolphin	MODERN SPECIES	1999																MAP2K2 (ENSTTRG00000006781) #22	ZBTB7A (ENSTTRG00000006780) #23	PIAS4 (ENSTTRG00000006779) #24	EEF2 (ENSTTRG00000006776) #25	DAPK3 (ENSTTRG00000006774) #26	NMRK2 (ENSTTRG00000006772) #27	ATCAY (ENSTTRG00000006771) #28	ZFR2 (ENSTTRG00000006762) #29	MATK (ENSTTRG00000006758) #30	RAX2 (ENSTTRG00000006753) #31
Sperm whale	MODERN SPECIES	245																MAP2K2 (ENSPCTG00005022340) #22	ZBTB7A (ENSPCTG00005022348) #23
Blue whale	MODERN SPECIES	14	PLIN4 (ENSBMSG00010003769) #7	HDGFL2 (ENSBMSG00010003814) #8	UBXN6 (ENSBMSG00010003834) #9	CHAF1A (ENSBMSG00010003859) #10	SH3GL1 (ENSBMSG00010003891) #11	MPND (ENSBMSG00010003950) #12	STAP2 (ENSBMSG00010004012) #13	FSD1 (ENSBMSG00010004028) #14	TMIGD2 (ENSBMSG00010004047) #15	SHD (ENSBMSG00010004056) #16	YJU2 (ENSBMSG00010004085) #17	EBI3 (ENSBMSG00010004101) #18	ANKRD24 (ENSBMSG00010004125) #19	SIRT6 (ENSBMSG00010004161) #20	CREB3L3 (ENSBMSG00010004181) #21	MAP2K2 (ENSBMSG00010004206) #22	PIAS4 (ENSBMSG00010004230) #24	EEF2 (ENSBMSG00010006690) #25	ENSBMSG00010006760 #27	ATCAY (ENSBMSG00010006778) #28	ZFR2 (ENSBMSG00010006830) #29	ZNF555 (ENSBMSG00010007047)	ENSBMSG00010007074	ENSBMSG00010007090	ENSBMSG00010007121	ENSBMSG00010007140	ENSBMSG00010007156	ENSBMSG00010007176	TLE2 (ENSBMSG00010007244)	TLE5 (ENSBMSG00010007577)	GNA11 (ENSBMSG00010007614)
Pecora	ANCESTRAL SPECIES		ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT01000000215054	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT00520000060565
Percora_a	ANCESTRAL SPECIES		ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT01000000215054	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT00520000060565
Bovidae	ANCESTRAL SPECIES		ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT01000000215054	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37
Caprinae	ANCESTRAL SPECIES	3	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00960000192381	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37
Rambouillet Sheep	MODERN SPECIES	21	PLIN4 (ENSOARG00020014173) #7	HDGFL2 (ENSOARG00020014218) #8	UBXN6 (ENSOARG00020014307) #9	CHAF1A (ENSOARG00020014361) #10	SH3GL1 (ENSOARG00020014536) #11	MPND (ENSOARG00020014684) #12	STAP2 (ENSOARG00020015409) #13	FSD1 (ENSOARG00020015484) #14	ENSOARG00020015717	SHD (ENSOARG00020015785) #16	YJU2 (ENSOARG00020015953) #17	EBI3 (ENSOARG00020016010) #18	ANKRD24 (ENSOARG00020016056) #19	SIRT6 (ENSOARG00020016205) #20	CREB3L3 (ENSOARG00020016282) #21	MAP2K2 (ENSOARG00020016331) #22	ZBTB7A (ENSOARG00020016414) #23	PIAS4 (ENSOARG00020016478) #24	EEF2 (ENSOARG00020016508) #25	DAPK3 (ENSOARG00020016591) #26	ENSOARG00020016636 #27	ATCAY (ENSOARG00020016696) #28	ZFR2 (ENSOARG00020016870) #29	MATK (ENSOARG00020017085) #30	RAX2 (ENSOARG00020017140) #31	MRPL54 (ENSOARG00020017174) #32	APBA3 (ENSOARG00020017206) #33	TJP3 (ENSOARG00020017288) #34	PIP5K1C (ENSOARG00020017829) #35	CACTIN (ENSOARG00020018654) #36	TBXA2R (ENSOARG00020018783) #37
Goat	MODERN SPECIES	26	PLIN5 (ENSCHIG00000020436) ##7	ENSCHIG00000010326 #7	HDGFL2 (ENSCHIG00000019288) #8	UBXN6 (ENSCHIG00000004865) #9	CHAF1A (ENSCHIG00000013105) #10	SH3GL1 (ENSCHIG00000027242) #11	MPND (ENSCHIG00000015132) #12	STAP2 (ENSCHIG00000010686) #13	FSD1 (ENSCHIG00000020728) #14	SHD (ENSCHIG00000016892) #16	ENSCHIG00000016966 #17	EBI3 (ENSCHIG00000026597) #18	ANKRD24 (ENSCHIG00000022948) #19	SIRT6 (ENSCHIG00000025871) #20	CREB3L3 (ENSCHIG00000026228) #21	MAP2K2 (ENSCHIG00000014919) #22	ZBTB7A (ENSCHIG00000022661) #23	PIAS4 (ENSCHIG00000015352) #24	ENSCHIG00000013910 #25	DAPK3 (ENSCHIG00000018026) #26	NMRK2 (ENSCHIG00000008917) #27	ATCAY (ENSCHIG00000026683) #28	ZFR2 (ENSCHIG00000024368) #29	MATK (ENSCHIG00000014576) #30	RAX2 (ENSCHIG00000020868) #31	MRPL54 (ENSCHIG00000026538) #32	APBA3 (ENSCHIG00000014574) #33	TJP3 (ENSCHIG00000017841) #34	PIP5K1C (ENSCHIG00000022491) #35	CACTIN (ENSCHIG00000026750) #36	TBXA2R (ENSCHIG00000012747) #37
Bovinae	ANCESTRAL SPECIES	2	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT01000000215054	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT01100000263504.a.b.a.b.a.b.ib	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36
Bos	ANCESTRAL SPECIES	3	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT01000000215054	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT01100000263504.a.b.a.b.a.b.ib	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36
Bos_b	ANCESTRAL SPECIES	2	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT01000000215054	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT01100000263504.a.b.a.b.a.b.ib	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36
Cow	MODERN SPECIES	26	UBXN6 (ENSBTAG00000008186) #9	CHAF1A (ENSBTAG00000008181) #10	SH3GL1 (ENSBTAG00000006007) #11	MPND (ENSBTAG00000006005) #12	STAP2 (ENSBTAG00000006001) #13	ENSBTAG00000054165	FSD1 (ENSBTAG00000005999) #14	TMIGD2 (ENSBTAG00000004936) #15	SHD (ENSBTAG00000039696) #16	YJU2 (ENSBTAG00000012830) #17	EBI3 (ENSBTAG00000012829) #18	ENSBTAG00000054046 #19	ENSBTAG00000052694	SIRT6 (ENSBTAG00000019909) #20	CREB3L3 (ENSBTAG00000010215) #21	MAP2K2 (ENSBTAG00000024450) #22	ZBTB7A (ENSBTAG00000020117) #23	PIAS4 (ENSBTAG00000000753) #24	ENSBTAG00000045914	EEF2 (ENSBTAG00000004258) #25	DAPK3 (ENSBTAG00000020417) #26	NMRK2 (ENSBTAG00000031573) #27	ATCAY (ENSBTAG00000018375) #28	ZFR2 (ENSBTAG00000000755) #29	MATK (ENSBTAG00000006619) #30	RAX2 (ENSBTAG00000009750) #31	MRPL54 (ENSBTAG00000008396) #32	APBA3 (ENSBTAG00000008395) #33	TJP3 (ENSBTAG00000018342) #34	PIP5K1C (ENSBTAG00000000710) #35	CACTIN (ENSBTAG00000010373) #36
Hybrid Bos Indicus	MODERN SPECIES	26	UBXN6 (ENSBIXG00005013594) #9	CHAF1A (ENSBIXG00005001662) #10	SH3GL1 (ENSBIXG00005013675) #11	MPND (ENSBIXG00005013751) #12	ENSBIXG00005013788	STAP2 (ENSBIXG00005013835) #13	FSD1 (ENSBIXG00005013884) #14	ENSBIXG00005013897 #15	SHD (ENSBIXG00005013953) #16	YJU2 (ENSBIXG00005013975) #17	EBI3 (ENSBIXG00005007490) #18	ENSBIXG00005014008	ANKRD24 (ENSBIXG00005014095) #19	SIRT6 (ENSBIXG00005014147) #20	CREB3L3 (ENSBIXG00005014171) #21	MAP2K2 (ENSBIXG00005014227) #22	ZBTB7A (ENSBIXG00005007496) #23	PIAS4 (ENSBIXG00005014272) #24	ENSBIXG00005001922 #25	NMRK2 (ENSBIXG00005014431) #27	ATCAY (ENSBIXG00005006129) #28	ZFR2 (ENSBIXG00005007010) #29	MATK (ENSBIXG00005014627) #30	RAX2 (ENSBIXG00005014658) #31	MRPL54 (ENSBIXG00005014674) #32	APBA3 (ENSBIXG00005005496) #33	TJP3 (ENSBIXG00005002143) #34	PIP5K1C (ENSBIXG00005014985) #35	CACTIN (ENSBIXG00005002202) #36	TBXA2R (ENSBIXG00005015046) #37	GIPC3 (ENSBIXG00005002213)
Bos_a	ANCESTRAL SPECIES	2	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT01100000263504.a.b.a.b.a.b.ib	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36
Domestic yak	MODERN SPECIES	27	PLIN4 (ENSBGRG00000014527) #7	HDGFL2 (ENSBGRG00000014602) #8	UBXN6 (ENSBGRG00000014883) #9	CHAF1A (ENSBGRG00000015141) #10	SH3GL1 (ENSBGRG00000015300) #11	MPND (ENSBGRG00000015810) #12	STAP2 (ENSBGRG00000016477) #13	FSD1 (ENSBGRG00000016795) #14	ENSBGRG00000017038 #15	SHD (ENSBGRG00000017098) #16	ENSBGRG00000017328 #16	EBI3 (ENSBGRG00000017377) #18	ANKRD24 (ENSBGRG00000017470) #19	SIRT6 (ENSBGRG00000017784) #20	CREB3L3 (ENSBGRG00000017902) #21	MAP2K2 (ENSBGRG00000018429) #22	ZBTB7A (ENSBGRG00000018478) #23	PIAS4 (ENSBGRG00000018519) #24	ENSBGRG00000018795	EEF2 (ENSBGRG00000018816) #25	DAPK3 (ENSBGRG00000019101) #26	NMRK2 (ENSBGRG00000019172) #27	ATCAY (ENSBGRG00000019249) #28	ZFR2 (ENSBGRG00000019327) #29	MATK (ENSBGRG00000019523) #30	RAX2 (ENSBGRG00000019785) #31	MRPL54 (ENSBGRG00000019811) #32	APBA3 (ENSBGRG00000019857) #33	TJP3 (ENSBGRG00000019950) #34	PIP5K1C (ENSBGRG00000020521) #35	CACTIN (ENSBGRG00000020942) #36
Wild yak	MODERN SPECIES	763	PLIN4 (ENSBMUG00000019070) #7	HDGFL2 (ENSBMUG00000019044) #8	UBXN6 (ENSBMUG00000019018) #9	CHAF1A (ENSBMUG00000018995) #10	SH3GL1 (ENSBMUG00000018967) #11	MPND (ENSBMUG00000018908) #12	STAP2 (ENSBMUG00000018840) #13	FSD1 (ENSBMUG00000018781) #14	TMIGD2 (ENSBMUG00000018751) #15	SHD (ENSBMUG00000018741) #16	YJU2 (ENSBMUG00000018705) #17	EBI3 (ENSBMUG00000018691) #18	ANKRD24 (ENSBMUG00000018653) #19	SIRT6 (ENSBMUG00000018589) #20	CREB3L3 (ENSBMUG00000018566) #21	MAP2K2 (ENSBMUG00000018543) #22	ZBTB7A (ENSBMUG00000018531) #23	PIAS4 (ENSBMUG00000018518) #24	ENSBMUG00000018505 #25	DAPK3 (ENSBMUG00000018482) #26	NMRK2 (ENSBMUG00000018462) #27	ATCAY (ENSBMUG00000018411) #28	ZFR2 (ENSBMUG00000018402) #29	MATK (ENSBMUG00000018375) #30	RAX2 (ENSBMUG00000018362) #31	MRPL54 (ENSBMUG00000018345) #32	APBA3 (ENSBMUG00000018325) #33	TJP3 (ENSBMUG00000018288) #34	PIP5K1C (ENSBMUG00000018181) #35	CACTIN (ENSBMUG00000018104) #36	TBXA2R (ENSBMUG00000018072) #37
American bison	MODERN SPECIES	3349	PLIN5 (ENSBBBG00000022303) ##7	HDGFL2 (ENSBBBG00000022373) #8	UBXN6 (ENSBBBG00000022409) #9	CHAF1A (ENSBBBG00000022444) #10	SH3GL1 (ENSBBBG00000022500) #11	MPND (ENSBBBG00000022616) #12	STAP2 (ENSBBBG00000008960) #13	FSD1 (ENSBBBG00000022701) #14	TMIGD2 (ENSBBBG00000022717) #15	SHD (ENSBBBG00000022746) #16	YJU2 (ENSBBBG00000022764) #17	EBI3 (ENSBBBG00000022773) #18	ENSBBBG00000008311 #19	SIRT6 (ENSBBBG00000022808) #20	CREB3L3 (ENSBBBG00000022831) #21	MAP2K2 (ENSBBBG00000022851) #22	ZBTB7A (ENSBBBG00000022852) #23	PIAS4 (ENSBBBG00000022869) #24	ENSBBBG00000022877	EEF2 (ENSBBBG00000022915) #25	DAPK3 (ENSBBBG00000022951) #26	ENSBBBG00000006028 #27	ATCAY (ENSBBBG00000022991) #28	ENSBBBG00000023003 #29	MATK (ENSBBBG00000023026) #30	RAX2 (ENSBBBG00000008182) #31	MRPL54 (ENSBBBG00000023057) #32	APBA3 (ENSBBBG00000006868) #33	TJP3 (ENSBBBG00000023169) #34	PIP5K1C (ENSBBBG00000000451) #35	CACTIN (ENSBBBG00000000388) #36
Siberian musk deer	MODERN SPECIES	99	ENSMMSG00000022530 #7	HDGFL2 (ENSMMSG00000022535) #8	ENSMMSG00000022557 #9	CHAF1A (ENSMMSG00000022582) #10	SH3GL1 (ENSMMSG00000022602) #11	MPND (ENSMMSG00000022624) #12	STAP2 (ENSMMSG00000022651) #13	FSD1 (ENSMMSG00000022670) #14	ENSMMSG00000022677	SHD (ENSMMSG00000022694) #16	YJU2 (ENSMMSG00000022712) #17	EBI3 (ENSMMSG00000022725) #18	ANKRD24 (ENSMMSG00000022747) #19	SIRT6 (ENSMMSG00000022789) #20	CREB3L3 (ENSMMSG00000022814) #21	MAP2K2 (ENSMMSG00000022835) #22	ZBTB7A (ENSMMSG00000022860) #23	PIAS4 (ENSMMSG00000022871) #24	EEF2 (ENSMMSG00000022885) #25	DAPK3 (ENSMMSG00000022904) #26	NMRK2 (ENSMMSG00000022912) #27	ATCAY (ENSMMSG00000022923) #28	ZFR2 (ENSMMSG00000022940) #29	MATK (ENSMMSG00000022958) #30	RAX2 (ENSMMSG00000022983) #31	MRPL54 (ENSMMSG00000022990) #32	APBA3 (ENSMMSG00000023004) #33	TJP3 (ENSMMSG00000023025) #34	PIP5K1C (ENSMMSG00000023101) #35	CACTIN (ENSMMSG00000023129) #36	ENSMMSG00000023139
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	6	ENSCHYG00000006294	CUTC (ENSCHYG00000006242)	COX15 (ENSCHYG00000006179)	ENTPD7 (ENSCHYG00000006056)	SLC25A28 (ENSCHYG00000006008)	NKX2-3 (ENSCHYG00000005991)	ENSCHYG00000005946	CNNM1 (ENSCHYG00000005721)	HPSE2 (ENSCHYG00000005569)	HPS1 (ENSCHYG00000005361)	PYROXD2 (ENSCHYG00000005123)	ENSCHYG00000005075	LOXL4 (ENSCHYG00000005041)	R3HCC1L (ENSCHYG00000004994)	CRTAC1 (ENSCHYG00000004903)	ENSCHYG00000004880 #22	SFRP5 (ENSCHYG00000004868)	ZFYVE27 (ENSCHYG00000004712)	MARVELD1 (ENSCHYG00000004459)	AVPI1 (ENSCHYG00000004424)	PI4K2A (ENSCHYG00000021371)	MORN4 (ENSCHYG00000021303)	HOGA1 (ENSCHYG00000021197)	ANKRD2 (ENSCHYG00000020741)	UBTD1 (ENSCHYG00000020651)	MMS19 (ENSCHYG00000020307)	ZDHHC16 (ENSCHYG00000019968)	ENSCHYG00000019703	PGAM1 (ENSCHYG00000019647)	RRP12 (ENSCHYG00000018769)	ENSCHYG00000018643
Yarkand deer	MODERN SPECIES	32	PLIN4 (ENSCHYG00000001804) #7	HDGFL2 (ENSCHYG00000001844) #8	UBXN6 (ENSCHYG00000001896) #9	CHAF1A (ENSCHYG00000001952) #10	SH3GL1 (ENSCHYG00000002051) #11	MPND (ENSCHYG00000002106) #12	STAP2 (ENSCHYG00000002168) #13	FSD1 (ENSCHYG00000002221) #14	ENSCHYG00000002245	SHD (ENSCHYG00000002265) #16	YJU2 (ENSCHYG00000002292) #17	EBI3 (ENSCHYG00000002313) #18	ANKRD24 (ENSCHYG00000002425) #19	SIRT6 (ENSCHYG00000002658) #20	CREB3L3 (ENSCHYG00000002681) #21	ENSCHYG00000002715 #22	ZBTB7A (ENSCHYG00000002749) #23	PIAS4 (ENSCHYG00000002769) #24	ENSCHYG00000002813 #25	DAPK3 (ENSCHYG00000002848) #26	NMRK2 (ENSCHYG00000002878) #27	ATCAY (ENSCHYG00000002905) #28	ZFR2 (ENSCHYG00000002949) #29	MRPL54 (ENSCHYG00000002977) #32	MATK (ENSCHYG00000003016) #30	RAX2 (ENSCHYG00000003107) #31	APBA3 (ENSCHYG00000003126) #33	TJP3 (ENSCHYG00000003169) #34	PIP5K1C (ENSCHYG00000003264) #35	CACTIN (ENSCHYG00000003483) #36	TBXA2R (ENSCHYG00000003508) #37
Atlantogenata	ANCESTRAL SPECIES	79	ENSGT00950000182920.b.a.a.c.b ##7	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37
Xenarthra	ANCESTRAL SPECIES																	ENSGT00940000153487.b.a #22
Armadillo	MODERN SPECIES	2220																MAP2K2 (ENSDNOG00000013548) #22
Afrotheria	ANCESTRAL SPECIES	97	ENSGT00950000182920.b.a.a.c.b ##7	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37
Afrotheria_a	ANCESTRAL SPECIES	101	ENSGT00950000182920.b.a.a.c.b ##7	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163572 #31	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.A.a #36	ENSGT01030000234559.a.a.a #37
Hyrax	MODERN SPECIES	11406																MAP2K2 (ENSPCAG00000012529) #22
Elephant	MODERN SPECIES	60	PLIN5 (ENSLAFG00000020616) ##7	PLIN4 (ENSLAFG00000000789) #7	HDGFL2 (ENSLAFG00000029578) #8	UBXN6 (ENSLAFG00000028613) #9	CHAF1A (ENSLAFG00000000293) #10	SH3GL1 (ENSLAFG00000023065) #11	MPND (ENSLAFG00000029255) #12	STAP2 (ENSLAFG00000026115) #13	FSD1 (ENSLAFG00000030096) #14	SHD (ENSLAFG00000009357) #16	YJU2 (ENSLAFG00000007891) #17	EBI3 (ENSLAFG00000022621) #18	ANKRD24 (ENSLAFG00000009676) #19	SIRT6 (ENSLAFG00000026522) #20	ENSLAFG00000010510 #21	MAP2K2 (ENSLAFG00000015636) #22	PIAS4 (ENSLAFG00000009166) #24	EEF2 (ENSLAFG00000009159) #25	DAPK3 (ENSLAFG00000029621) #26	NMRK2 (ENSLAFG00000031525) #27	ATCAY (ENSLAFG00000012399) #28	ZFR2 (ENSLAFG00000020813) #29	MATK (ENSLAFG00000022360) #30	MRPL54 (ENSLAFG00000029657) #32	APBA3 (ENSLAFG00000015080) #33	TJP3 (ENSLAFG00000027222) #34	PIP5K1C (ENSLAFG00000022484) #35	ENSLAFG00000031774 #36	TBXA2R (ENSLAFG00000027874) #37	ENSLAFG00000030325	GIPC3 (ENSLAFG00000007849)
Tenrec	MODERN SPECIES	2472																ENSETEG00000016447 #22
Marsupialia	ANCESTRAL SPECIES	1	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163917.b	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00390000001450.h.a.b.b	ENSGT00940000159258 #35	ENSGT00950000183102.B ##36
Opossum	MODERN SPECIES	2	ENSMODG00000001022	PLIN5 (ENSMODG00000001016) ##7	ENSMODG00000000998 #7	HDGFL2 (ENSMODG00000000988) #8	ENSMODG00000000967 #9	CHAF1A (ENSMODG00000000950) #10	SH3GL1 (ENSMODG00000000931) #11	MPND (ENSMODG00000000907) #12	STAP2 (ENSMODG00000000895) #13	FSD1 (ENSMODG00000000881) #14	ENSMODG00000027838 #15	SHD (ENSMODG00000000858) #16	YJU2 (ENSMODG00000000841) #17	ENSMODG00000024036 #18	CREB3L3 (ENSMODG00000000817) #21	MAP2K2 (ENSMODG00000000809) #22	ZBTB7A (ENSMODG00000000778) #23	ENSMODG00000045895	PIAS4 (ENSMODG00000000765) #24	EEF2 (ENSMODG00000000750) #25	DAPK3 (ENSMODG00000043143) #26	NMRK2 (ENSMODG00000000709) #27	ATCAY (ENSMODG00000000696) #28	ZFR2 (ENSMODG00000000675) #29	MATK (ENSMODG00000000637) #30	ENSMODG00000000607	ENSMODG00000000602 #32	APBA3 (ENSMODG00000000598) #33	TJP3 (ENSMODG00000000580) #34	VN2R501 (ENSMODG00000037853)	monDomV1R1215 (ENSMODG00000039829)
Marsupialia_b	ANCESTRAL SPECIES	2	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163917.b	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00950000182890.D.c.b.a.a.b.a.a.a	ENSGT00940000154650.d.f.d.a.a	ENSGT00390000001450.h.a.b.b
Diprotodontia	ANCESTRAL SPECIES	20	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163917.b	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00950000182890.D.c.b.a.a.b.a.a.a	ENSGT00940000154650.d.f.d.a.a	ENSGT00390000001450.h.a.b.b
Diprotodontia_a	ANCESTRAL SPECIES	16	ENSGT00950000182920.b.a.a.c.a.b.b #7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00390000007100 #15	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000162148 #29	ENSGT00940000160775 #30	ENSGT00940000163917.b	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00950000182890.D.c.b.a.a.b.a.a.a	ENSGT00940000154650.d.f.d.a.a	ENSGT00390000001450.h.a.b.b
koala	MODERN SPECIES	214	ENSPCIG00000012395 ##7	ENSPCIG00000003958 #7	HDGFL2 (ENSPCIG00000003977) #8	UBXN6 (ENSPCIG00000006287) #9	CHAF1A (ENSPCIG00000006291) #10	SH3GL1 (ENSPCIG00000006316) #11	MPND (ENSPCIG00000006318) #12	STAP2 (ENSPCIG00000006321) #13	FSD1 (ENSPCIG00000006329) #14	SHD (ENSPCIG00000006337) #16	YJU2 (ENSPCIG00000006341) #17	EBI3 (ENSPCIG00000036381) #18	ENSPCIG00000035510 #19	SIRT6 (ENSPCIG00000006432) #20	CREB3L3 (ENSPCIG00000006434) #21	MAP2K2 (ENSPCIG00000006438) #22	ZBTB7A (ENSPCIG00000025417) #23	PIAS4 (ENSPCIG00000025412) #24	EEF2 (ENSPCIG00000025403) #25	DAPK3 (ENSPCIG00000025399) #26	NMRK2 (ENSPCIG00000025398) #27	ATCAY (ENSPCIG00000025395) #28	ZFR2 (ENSPCIG00000025388) #29	MATK (ENSPCIG00000025386) #30	ENSPCIG00000025384	MRPL54 (ENSPCIG00000025383) #32	APBA3 (ENSPCIG00000025381) #33	TJP3 (ENSPCIG00000025374) #34
Common wonbat	MODERN SPECIES	580	HDGFL2 (ENSVURG00010024626) #8	UBXN6 (ENSVURG00010024630) #9	ENSVURG00010024633 #10	SH3GL1 (ENSVURG00010024635) #11	MPND (ENSVURG00010024637) #12	STAP2 (ENSVURG00010024642) #13	FSD1 (ENSVURG00010024652) #14	ENSVURG00010024655 #15	SHD (ENSVURG00010024657) #16	ENSVURG00010024660	YJU2 (ENSVURG00010024661) #17	EBI3 (ENSVURG00010024663) #18	ANKRD24 (ENSVURG00010024667) #19	SIRT6 (ENSVURG00010024673) #20	CREB3L3 (ENSVURG00010024676) #21	MAP2K2 (ENSVURG00010024677) #22	ZBTB7A (ENSVURG00010024681) #23	PIAS4 (ENSVURG00010024683) #24	EEF2 (ENSVURG00010024687) #25	DAPK3 (ENSVURG00010024691) #26	ATCAY (ENSVURG00010024696) #28	ZFR2 (ENSVURG00010024701) #29	MATK (ENSVURG00010024711) #30	ENSVURG00010024713	MRPL54 (ENSVURG00010024716) #32	APBA3 (ENSVURG00010024720) #33	TJP3 (ENSVURG00010024727) #34	ENSVURG00010024737	ENSVURG00010024739	ENSVURG00010024741	ENSVURG00010024743
Wallaby	MODERN SPECIES	3377																ENSMEUG00000012103 #22
Tasmanian devil	MODERN SPECIES		ENSSHAG00000002056 #8	PLIN5 (ENSSHAG00000003441) ##7	ENSSHAG00000027707 #7	UBXN6 (ENSSHAG00000029235) #9	CHAF1A (ENSSHAG00000000307) #10	ENSSHAG00000000851 #11	MPND (ENSSHAG00000000206) #12	STAP2 (ENSSHAG00000023692) #13	FSD1 (ENSSHAG00000030022) #14	SHD (ENSSHAG00000010563) #16	YJU2 (ENSSHAG00000010428) #17	EBI3 (ENSSHAG00000027537) #18	ANKRD24 (ENSSHAG00000010216) #19	SIRT6 (ENSSHAG00000009965) #20	CREB3L3 (ENSSHAG00000009874) #21	MAP2K2 (ENSSHAG00000009251) #22	ZBTB7A (ENSSHAG00000027505) #23	PIAS4 (ENSSHAG00000024821) #24	EEF2 (ENSSHAG00000007539) #25	DAPK3 (ENSSHAG00000030421) #26	ENSSHAG00000030604 #27	ATCAY (ENSSHAG00000006184) #28	ENSSHAG00000004724 #29	MATK (ENSSHAG00000003362) #30	ENSSHAG00000003118	MRPL54 (ENSSHAG00000002557) #32	APBA3 (ENSSHAG00000002223) #33	TJP3 (ENSSHAG00000001439) #34	ENSSHAG00000024272	ENSSHAG00000030563	ENSSHAG00000030933
Platypus	MODERN SPECIES	85	SMARCA4 (ENSOANG00000004355)	TIMM29 (ENSOANG00000036642)	YIPF2 (ENSOANG00000050867)	CARM1 (ENSOANG00000045313)	ENSOANG00000009834	TMED1 (ENSOANG00000037520)	DNM2 (ENSOANG00000013365)	ENSOANG00000006439 #13	FSD1 (ENSOANG00000006431) #14	SHD (ENSOANG00000014374) #16	YJU2 (ENSOANG00000008914) #17	EBI3 (ENSOANG00000028577) #18	ANKRD24 (ENSOANG00000048879) #19	SIRT6 (ENSOANG00000008787) #20	CREB3L3 (ENSOANG00000013246) #21	MAP2K2 (ENSOANG00000045918) #22	ZBTB7A (ENSOANG00000045647) #23	PIAS4 (ENSOANG00000031620) #24	ENSOANG00000014032 #25	DAPK3 (ENSOANG00000003319) #26	NMRK2 (ENSOANG00000035130) #27	ATCAY (ENSOANG00000006292) #28	ENSOANG00000011220 #29	MATK (ENSOANG00000010674) #30	ENSOANG00000037708 #32	APBA3 (ENSOANG00000006293) #33	TJP3 (ENSOANG00000006294) #34	PIP5K1C (ENSOANG00000006295) #35	TBXA2R (ENSOANG00000037569) #37	HMG20B (ENSOANG00000013515)	ENSOANG00000014325
Sauria	ANCESTRAL SPECIES	20	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00990000205656	ENSGT00940000159237 #19	ENSGT01000000215054	ENSGT00940000160088 #20	ENSGT01030000234534.B.a.a.a.a	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000154779.a.a	ENSGT00940000153424.a.a.d	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000163125	ENSGT00950000182993.A.a	ENSGT00550000075134	ENSGT00390000016128	ENSGT01050000244879.a.a.a	ENSGT00940000155332.A	ENSGT00940000158800
Archelosauria	ANCESTRAL SPECIES	20	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00950000186319	ENSGT00940000159004 #16	ENSGT00960000189486	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00990000205656	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT01030000234534.B.a.a.a.a	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000154779.a.a	ENSGT00940000153424.a.a.d	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000163125	ENSGT00950000182993.A.a	ENSGT00550000075134	ENSGT00390000016128	ENSGT00940000166580	ENSGT01050000244879.a.a.a	ENSGT00940000155332.A
Archosauria	ANCESTRAL SPECIES	16	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00950000186319	ENSGT00940000159004 #16	ENSGT00960000189486	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00990000205656	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT01030000234534.B.a.a.a.a	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000154779.a.a	ENSGT00940000153424.a.a.d	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000163125	ENSGT00950000182993.A.a	ENSGT00550000075134	ENSGT00390000016128	ENSGT00940000166580	ENSGT01050000244879.a.a.a	ENSGT00940000155332.A
Aves	ANCESTRAL SPECIES	20	ENSGT00950000182920.b.a.a.d.d.a ##7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00950000186319	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000163125	ENSGT00950000182993.A.a	ENSGT00550000075134	ENSGT00940000166580	ENSGT01050000244879.a.a.a	ENSGT00940000155332.A	ENSGT00940000158800	ENSGT00730000110920.b.a.a	ENSGT00950000182907.b
Neognathae	ANCESTRAL SPECIES	21	ENSGT00950000182920.b.a.a.d.d.a ##7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00950000186319	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000163125	ENSGT00950000182993.A.a	ENSGT00550000075134	ENSGT00940000166580	ENSGT01050000244879.a.a.a	ENSGT00940000155332.A	ENSGT00940000158800	ENSGT00730000110920.b.a.a	ENSGT00950000182907.b
Galloanserae	ANCESTRAL SPECIES	20	ENSGT00950000182920.b.a.a.d.d.a ##7	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00950000186319	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050.k #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000163125	ENSGT00950000182993.A.a	ENSGT00550000075134	ENSGT00960000189545	ENSGT00940000166580	ENSGT01050000244879.a.a.a	ENSGT00940000155332.A	ENSGT00940000158800	ENSGT00730000110920.b.a.a
Phasianidae	ANCESTRAL SPECIES	19	ENSGT00390000018299	ENSGT00950000183005.b.c	ENSGT00940000162613	ENSGT01030000234573.A.b.b.a	ENSGT00940000154737.c #11	ENSGT00440000034888 #10	ENSGT00940000157273 #9	ENSGT00940000153942.a.f #8	ENSGT00950000182920.b.a.a.d.d.a ##7	ENSGT00950000182920.b.a.a.d.d.b ##7	ENSGT00940000165355	ENSGT00940000159170	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000161259.B	ENSGT00950000182870.a.a.a.a	ENSGT00940000164530	ENSGT00510000049549	ENSGT00500000045074	ENSGT00940000160356	ENSGT00940000159142	ENSGT00940000156523.b	ENSGT00390000008060	ENSGT00940000161721	ENSGT00940000157113	ENSGT00940000161332	ENSGT00940000162457	ENSGT00940000160580	ENSGT00940000154739.B
Japanese quail	MODERN SPECIES	20	TCF3 (ENSCJPG00005010314)	UQCR11 (ENSCJPG00005010315)	ENSCJPG00005010316	MEX3D (ENSCJPG00005010317)	MIER2 (ENSCJPG00005010318)	SH3GL1 (ENSCJPG00005010319) #11	CHAF1A (ENSCJPG00005010320) #10	UBXN6 (ENSCJPG00005010321) #9	HDGFL2 (ENSCJPG00005010322) #8	ENSCJPG00005010323 ##7	ENSCJPG00005010324 ##7	ENSCJPG00005010325	SEMA6B (ENSCJPG00005010326)	SIRT6 (ENSCJPG00005010328) #20	CREB3L3 (ENSCJPG00005010329) #21	MAP2K2 (ENSCJPG00005010330) #22	C2CD4C (ENSCJPG00005010331)	ENSCJPG00005010332	ENSCJPG00005010333	ENSCJPG00005010334	TPGS1 (ENSCJPG00005010335)	CDC34 (ENSCJPG00005010336)	BSG (ENSCJPG00005010337)	HCN2 (ENSCJPG00005010338)	POLRMT (ENSCJPG00005010339)	FGF22 (ENSCJPG00005010340)	RNF126 (ENSCJPG00005010341)	FSTL3 (ENSCJPG00005010342)	PRSS57 (ENSCJPG00005010343)	PALM (ENSCJPG00005010344)	ENSCJPG00005010345
Phasianidae_b	ANCESTRAL SPECIES	20	ENSGT00390000018299	ENSGT00950000183005.b.c	ENSGT00940000162613	ENSGT01030000234573.A.b.b.a	ENSGT00940000154737.c #11	ENSGT00440000034888 #10	ENSGT00940000157273 #9	ENSGT00940000153942.a.f #8	ENSGT00950000182920.b.a.a.d.d.a ##7	ENSGT00950000182920.b.a.a.d.d.b ##7	ENSGT00940000165355	ENSGT00940000159170	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000161259.B	ENSGT00950000182870.a.a.a.a	ENSGT00940000164530	ENSGT00510000049549	ENSGT00500000045074	ENSGT00940000160356	ENSGT00940000159142	ENSGT00940000156523.b	ENSGT00390000008060	ENSGT00940000161721	ENSGT00940000157113	ENSGT00940000161332	ENSGT00940000162457	ENSGT00940000160580	ENSGT00940000154739.B
Turkey	MODERN SPECIES	23	ENSMGAG00000019264	ENSMGAG00000018004	FSTL3 (ENSMGAG00000003378)	ENSMGAG00000003385	FGF22 (ENSMGAG00000021556)	ENSMGAG00000003312	HCN2 (ENSMGAG00000003181)	ENSMGAG00000003243	BSG (ENSMGAG00000003132)	ENSMGAG00000019149	ENSMGAG00000003104	ENSMGAG00000002676	ENSMGAG00000003095	ENSMGAG00000013112	ENSMGAG00000002308	ENSMGAG00000002951 #22	ANKRD24 (ENSMGAG00000002898) #19	ENSMGAG00000002932 #20	CREB3L3 (ENSMGAG00000002752) #21	ENSMGAG00000002886	ENSMGAG00000020137	ENSMGAG00000019508 ##7	ENSMGAG00000021893 #8	ENSMGAG00000002817 #8	ENSMGAG00000002850 ##7	ENSMGAG00000002708 #10	ENSMGAG00000002775 #9	SH3GL1 (ENSMGAG00000002570) #11	ENSMGAG00000002532	ENSMGAG00000002325	ENSMGAG00000002493
Chicken	MODERN SPECIES	20	UQCR11 (ENSGALG00010027746)	MBD3 (ENSGALG00010027801)	MEX3D (ENSGALG00010027811)	MIER2 (ENSGALG00010027100)	SH3GL1 (ENSGALG00010027192) #11	CHAF1A (ENSGALG00010027202) #10	UBXN6 (ENSGALG00010027208) #9	HDGFRP2 (ENSGALG00010027211) #8	PLIN4 (ENSGALG00010027214) ##7	ENSGALG00010028734 ##7	ENSGALG00010027216	SEMA6B (ENSGALG00010027217)	ANKRD24 (ENSGALG00010027220) #19	SIRT6 (ENSGALG00010027223) #20	CREB3L3 (ENSGALG00010027225) #21	MAP2K2 (ENSGALG00010027230) #22	C2CD4C (ENSGALG00010027249)	ENSGALG00010027258	ENSGALG00010028453	ENSGALG00010028467	TPGS1 (ENSGALG00010028471)	CDC34 (ENSGALG00010028473)	BSG (ENSGALG00010027468)	HCN2 (ENSGALG00010027479)	POLRMT (ENSGALG00010027511)	FGF22 (ENSGALG00010027553)	RNF126 (ENSGALG00010027358)	FSTL3 (ENSGALG00010027364)	PRSS57 (ENSGALG00010027371)	PALM (ENSGALG00010027382)	ENSGALG00010027401
Anatidae	ANCESTRAL SPECIES	57										ENSGT00940000159440 #14	ENSGT00530000063615.a #17	ENSGT00940000160050.k #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000154595	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.c	ENSGT01030000234515.a.b.b.d	ENSGT00510000047872	ENSGT00940000158753	ENSGT00940000159993	ENSGT00390000014000
Pink-footed goose	MODERN SPECIES	328									FSD1 (ENSABRG00000013237) #14	ENSABRG00000013221	YJU2 (ENSABRG00000013209) #17	EBI3 (ENSABRG00000013200) #18	ANKRD24 (ENSABRG00000013170) #19	SIRT6 (ENSABRG00000013168) #20	CREB3L3 (ENSABRG00000013162) #21	MAP2K2 (ENSABRG00000013052) #22	ZBTB7A (ENSABRG00000013020) #23	PIAS4 (ENSABRG00000013013) #24	EEF2 (ENSABRG00000012999) #25	DAPK3 (ENSABRG00000012994) #26	NMRK2 (ENSABRG00000012985) #27	HNRNPM (ENSABRG00000012911)	TIMM44 (ENSABRG00000012895)	CTXN1 (ENSABRG00000012885)	FBN3 (ENSABRG00000012106)	ENSABRG00000011913	ENSABRG00000011894
Duck	MODERN SPECIES	171																MAP2K2 (ENSAPLG00000011045) #22
Neognathae_b	ANCESTRAL SPECIES	22	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00950000186319	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000154595	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00950000183158.B.b	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000163125	ENSGT00950000182993.A.a	ENSGT00550000075134	ENSGT00940000166580	ENSGT01050000244879.a.a.a	ENSGT00940000155332.A	ENSGT00940000158800	ENSGT00730000110920.b.a.a	ENSGT00950000182907.b
Passeriformes	ANCESTRAL SPECIES	34	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00940000159440 #14	ENSGT00950000186319	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000154595	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00950000183158.B.b	ENSGT00940000160050 #18	ENSGT00940000159237.jb #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00950000182993.A.a	ENSGT00550000075134	ENSGT00940000160620	ENSGT00940000158959.b	ENSGT00940000162285	ENSGT00940000162806	ENSGT00610000086173	ENSGT00390000015368.a.a	ENSGT00940000161872
Passeriformes_d	ANCESTRAL SPECIES	35	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00940000159440 #14	ENSGT00950000186319	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000154595	ENSGT00390000000051.l	ENSGT00940000154412.C	ENSGT00950000183158.B.b	ENSGT00940000160050 #18	ENSGT00940000159237.jb #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00950000182993.A.a	ENSGT00550000075134	ENSGT00940000160620	ENSGT00940000158959.b	ENSGT00940000162285	ENSGT00610000086173	ENSGT00390000015368.a.a	ENSGT00940000161872	ENSGT00950000185433
Flycatcher	MODERN SPECIES	20	CHAF1A (ENSFALG00000001107) #10	SH3GL1 (ENSFALG00000025015) #11	MPND (ENSFALG00000024578) #12	FSD1 (ENSFALG00000001075) #14	ENSFALG00000025364	YJU2 (ENSFALG00000001069) #17	ENSFALG00000001059	ENSFALG00000028285	ENSFALG00000001036	ENSFALG00000000957	EBI3 (ENSFALG00000000935) #18	ENSFALG00000000929 #19	ENSFALG00000026801 #19	SIRT6 (ENSFALG00000000913) #20	CREB3L3 (ENSFALG00000000900) #21	MAP2K2 (ENSFALG00000000885) #22	ZBTB7A (ENSFALG00000000874) #23	PIAS4 (ENSFALG00000000872) #24	DAPK3 (ENSFALG00000000853) #26	NMRK2 (ENSFALG00000000845) #27	ATCAY (ENSFALG00000000839) #28	ENSFALG00000015092	EEF2 (ENSFALG00000000859) #25	ENSFALG00000001343	MPV17L2 (ENSFALG00000001340)	RAB3A (ENSFALG00000026129)	ENSFALG00000001336	ENSFALG00000028883	ENSFALG00000009478	PGPEP1 (ENSFALG00000009462)	ENSFALG00000009453
Passeriformes_g	ANCESTRAL SPECIES	39			ENSGT00940000159440 #14	ENSGT00950000186319	ENSGT00940000159004 #16	ENSGT00530000063615.a.a #17	ENSGT00530000063615.a.b #17	ENSGT00940000154595	ENSGT00390000000051.l	ENSGT00940000154412.C	ENSGT00950000183158.B.b	ENSGT00940000160050 #18	ENSGT00940000159237.jb #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00950000182993.A.a	ENSGT00550000075134	ENSGT00940000160620	ENSGT00940000158959.b	ENSGT00940000162285	ENSGT00940000162806	ENSGT00940000166941	ENSGT00610000086173	ENSGT00390000015368.a.a
Medium ground finch	MODERN SPECIES	317								ENSGFOG00000009063 #17	HNRNPM (ENSGFOG00000009068)	TIMM44 (ENSGFOG00000009101)	ENSGFOG00000009346	ENSGFOG00000009362	EBI3 (ENSGFOG00000009371) #18	SIRT6 (ENSGFOG00000009393) #20	CREB3L3 (ENSGFOG00000009442) #21	MAP2K2 (ENSGFOG00000009488) #22	ENSGFOG00000009528 #23	PIAS4 (ENSGFOG00000009535) #24	EEF2 (ENSGFOG00000009554) #25	DAPK3 (ENSGFOG00000009572) #26	NMRK2 (ENSGFOG00000009580) #27	ATCAY (ENSGFOG00000009591) #28	DUS3L (ENSGFOG00000009604)	MPV17L2 (ENSGFOG00000009615)	RAB3A (ENSGFOG00000009622)	ENSGFOG00000009627	ENSGFOG00000009640	LSM4 (ENSGFOG00000009643)	PGPEP1 (ENSGFOG00000009646)	ENSGFOG00000009650
Passeroidea	ANCESTRAL SPECIES	38			ENSGT00940000159440 #14	ENSGT00950000186319	ENSGT00940000159004 #16	ENSGT00530000063615.a.a #17	ENSGT00530000063615.a.b #17	ENSGT00940000154595	ENSGT00390000000051.l	ENSGT00940000154412.C	ENSGT00950000183158.B.b	ENSGT00940000160050 #18	ENSGT00940000159237.jb #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00950000182993.A.a	ENSGT00550000075134	ENSGT00940000160620	ENSGT00940000158959.b	ENSGT00940000162285	ENSGT00940000162806	ENSGT00940000166941	ENSGT00610000086173	ENSGT00390000015368.a.a
Zebra finch	MODERN SPECIES	21	ENSTGUG00000025953 #14	ENSTGUG00000023253	ENSTGUG00000029047 #16	ENSTGUG00000000935 #17	HNRNPM (ENSTGUG00000000938)	ATP5F1D (ENSTGUG00000000895)	TIMM44 (ENSTGUG00000013849)	ENSTGUG00000022997	ENSTGUG00000025566	ENSTGUG00000023585	ENSTGUG00000000946	EBI3 (ENSTGUG00000024855) #18	ANKRD24 (ENSTGUG00000000981) #19	SIRT6 (ENSTGUG00000000987) #20	CREB3L3 (ENSTGUG00000000991) #21	MAP2K2 (ENSTGUG00000000994) #22	ZBTB7A (ENSTGUG00000022308) #23	PIAS4 (ENSTGUG00000001000) #24	EEF2 (ENSTGUG00000001004) #25	DAPK3 (ENSTGUG00000001010) #26	NMRK2 (ENSTGUG00000001014) #27	ATCAY (ENSTGUG00000001016) #28	NRTN (ENSTGUG00000001018)	ENSTGUG00000023469	ENSTGUG00000028884	ENSTGUG00000026529	PDE4C (ENSTGUG00000024006)	JUND (ENSTGUG00000023330)	ENSTGUG00000001030	ENSTGUG00000022771	ENSTGUG00000022040
Common canary	MODERN SPECIES	109	CRTC1 (ENSSCAG00000011818)	ENSSCAG00000011873	KLHL26 (ENSSCAG00000011874)	TMEM59L (ENSSCAG00000011880)	CRLF1 (ENSSCAG00000011886)	ENSSCAG00000011890	UBA52 (ENSSCAG00000011895)	KXD1 (ENSSCAG00000011900)	FKBP8 (ENSSCAG00000011929)	ELL (ENSSCAG00000012011)	ENSSCAG00000012020	EBI3 (ENSSCAG00000012039) #18	ENSSCAG00000012041	SIRT6 (ENSSCAG00000012043) #20	CREB3L3 (ENSSCAG00000012049) #21	MAP2K2 (ENSSCAG00000012101) #22	ZBTB7A (ENSSCAG00000012113) #23	PIAS4 (ENSSCAG00000012119) #24	EEF2 (ENSSCAG00000012124) #25	DAPK3 (ENSSCAG00000012137) #26	NMRK2 (ENSSCAG00000012140) #27	CTXN1 (ENSSCAG00000012543)	ENSSCAG00000012552	HNRNPM (ENSSCAG00000012564)	ENSSCAG00000012572 #17
Great tit	MODERN SPECIES	21	HDGFL2 (ENSPMJG00000012872) #8	UBXN6 (ENSPMJG00000012871) #9	CHAF1A (ENSPMJG00000012870) #10	SH3GL1 (ENSPMJG00000012869) #11	MPND (ENSPMJG00000012868) #12	FSD1 (ENSPMJG00000012867) #14	SHD (ENSPMJG00000012866) #16	YJU2 (ENSPMJG00000012865) #17	HNRNPM (ENSPMJG00000012864)	TIMM44 (ENSPMJG00000012863)	CTXN1 (ENSPMJG00000012862)	FBN3 (ENSPMJG00000011752)	ANKRD24 (ENSPMJG00000011751) #19	SIRT6 (ENSPMJG00000011750) #20	CREB3L3 (ENSPMJG00000011749) #21	MAP2K2 (ENSPMJG00000011748) #22	ZBTB7A (ENSPMJG00000011747) #23	PIAS4 (ENSPMJG00000011744) #24	EEF2 (ENSPMJG00000011741) #25	DAPK3 (ENSPMJG00000011740) #26	NMRK2 (ENSPMJG00000011739) #27	ATCAY (ENSPMJG00000011738) #28	NRTN (ENSPMJG00000011737)	ENSPMJG00000011736	DUS3L (ENSPMJG00000011735)	MPV17L2 (ENSPMJG00000011734)	RAB3A (ENSPMJG00000011732)	ENSPMJG00000011731	ENSPMJG00000011730	LSM4 (ENSPMJG00000011729)	PGPEP1 (ENSPMJG00000011728)
Neognathae_c	ANCESTRAL SPECIES	24	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00950000186319	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000154595	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00950000183158.B.b	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000163125	ENSGT00950000182993.A.a	ENSGT00550000075134	ENSGT00940000166580	ENSGT01050000244879.a.a.a	ENSGT00940000155332.A	ENSGT00940000158800	ENSGT00730000110920.b.a.a	ENSGT00950000182907.b
Kakapo	MODERN SPECIES	13	ZAP70 (ENSSHBG00005014385)	ADAMTS10 (ENSSHBG00005014419)	MYO1F (ENSSHBG00005014552)	ZNF414 (ENSSHBG00005016095)	ENSSHBG00005016097	ACER1 (ENSSHBG00005016101)	MLLT1 (ENSSHBG00005016105)	ACSBG2 (ENSSHBG00005016127)	RFX2 (ENSSHBG00005016885)	ENSSHBG00005016968	FBN3 (ENSSHBG00005017003)	EBI3 (ENSSHBG00005017066) #18	ANKRD24 (ENSSHBG00005017072) #19	SIRT6 (ENSSHBG00005017080) #20	CREB3L3 (ENSSHBG00005017085) #21	MAP2K2 (ENSSHBG00005017092) #22	ZBTB7A (ENSSHBG00005017095) #23	ENSSHBG00005017098	PIAS4 (ENSSHBG00005017101) #24	EEF2 (ENSSHBG00005017109) #25	ENSSHBG00005017116	ENSSHBG00005017120 #27	ATCAY (ENSSHBG00005017123) #28	ENSSHBG00005017126	DUS3L (ENSSHBG00005017130)	TIMM44 (ENSSHBG00005017134)	HNRNPM (ENSSHBG00005017146)	LMNB2 (ENSSHBG00005017159)	TIMM13 (ENSSHBG00005017163)	ENSSHBG00005017170	ENSSHBG00005017173
Golden eagle	MODERN SPECIES	3	CHAF1A (ENSACCG00020015292) #10	SH3GL1 (ENSACCG00020015308) #11	MPND (ENSACCG00020015358) #12	STAP2 (ENSACCG00020015392) #13	FSD1 (ENSACCG00020015405) #14	ENSACCG00020015425	SHD (ENSACCG00020015436) #16	YJU2 (ENSACCG00020015454) #17	TIMM44 (ENSACCG00020015520)	CTXN1 (ENSACCG00020015575)	FBN3 (ENSACCG00020015604)	EBI3 (ENSACCG00020015642) #18	ANKRD24 (ENSACCG00020015679) #19	SIRT6 (ENSACCG00020015712) #20	CREB3L3 (ENSACCG00020015724) #21	MAP2K2 (ENSACCG00020015740) #22	ZBTB7A (ENSACCG00020015748) #23	PIAS4 (ENSACCG00020015756) #24	EEF2 (ENSACCG00020015772) #25	DAPK3 (ENSACCG00020015793) #26	NMRK2 (ENSACCG00020015806) #27	ATCAY (ENSACCG00020015815) #28	ENSACCG00020015834	NRTN (ENSACCG00020015844)	DUS3L (ENSACCG00020015859)	ENSACCG00020015877	RFX2 (ENSACCG00020015906)	ACSBG2 (ENSACCG00020015951)	MLLT1 (ENSACCG00020015972)	ACER1 (ENSACCG00020015987)	ENSACCG00020015996
African ostrich	MODERN SPECIES	700							ENSSCUG00000014917 ##7	ENSSCUG00000014937 #8	ENSSCUG00000014946 #8	UBXN6 (ENSSCUG00000014948) #9	CHAF1A (ENSSCUG00000014953) #10	SH3GL1 (ENSSCUG00000014955) #11	YJU2 (ENSSCUG00000014959) #17	SIRT6 (ENSSCUG00000014962) #20	CREB3L3 (ENSSCUG00000014966) #21	MAP2K2 (ENSSCUG00000014972) #22	ZBTB7A (ENSSCUG00000014977) #23	PIAS4 (ENSSCUG00000014980) #24	EEF2 (ENSSCUG00000014985) #25	DAPK3 (ENSSCUG00000014989) #26	NMRK2 (ENSSCUG00000014992) #27	ATCAY (ENSSCUG00000014996) #28	ENSSCUG00000015004
Australian saltwater crocodile	MODERN SPECIES	26	UBXN6 (ENSCPRG00005008794) #9	ENSCPRG00005008792	HDGFL2 (ENSCPRG00005008789) #8	ENSCPRG00005008788 ##7	ENSCPRG00005008785 #7	ENSCPRG00005008783	SHD (ENSCPRG00005008780) #16	ENSCPRG00005008778	YJU2 (ENSCPRG00005008776) #17	EBI3 (ENSCPRG00005008773) #18	ENSCPRG00005008771	ENSCPRG00005008770 #19	SIRT6 (ENSCPRG00005008769) #20	ENSCPRG00005008768	CREB3L3 (ENSCPRG00005008766) #21	MAP2K2 (ENSCPRG00005008753) #22	ZBTB7A (ENSCPRG00005008750) #23	PIAS4 (ENSCPRG00005008740) #24	EEF2 (ENSCPRG00005008734) #25	DAPK3 (ENSCPRG00005008729) #26	ENSCPRG00005008720	NMRK2 (ENSCPRG00005008704) #27	ATCAY (ENSCPRG00005008680) #28
Cryptodira	ANCESTRAL SPECIES	19	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00950000186319	ENSGT00940000159004 #16	ENSGT00960000189486	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00990000205656	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT01030000234534.B.a.a.a.a	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000163125	ENSGT00950000182993.A.a	ENSGT00550000075134	ENSGT00390000016128	ENSGT00940000166580	ENSGT01050000244879.a.a.a	ENSGT00940000155332.A	ENSGT00940000158800	ENSGT00730000110920.b.a.a
Testudinoidea	ANCESTRAL SPECIES	18	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00950000186319	ENSGT00940000159004 #16	ENSGT00960000189486	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00990000205656	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT01030000234534.B.a.a.a.a	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000163125	ENSGT00950000182993.A.a	ENSGT00550000075134	ENSGT00390000016128	ENSGT00940000166580	ENSGT01050000244879.a.a.a	ENSGT00940000155332.A	ENSGT00940000158800	ENSGT00730000110920.b.a.a
Testudinidae	ANCESTRAL SPECIES	20	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00950000186319	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00990000205656	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT01030000234534.B.a.a.a.a	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000163125	ENSGT00950000182993.A.a	ENSGT00550000075134	ENSGT00390000016128	ENSGT00940000166580	ENSGT01050000244879.a.a.a	ENSGT00940000155332.A	ENSGT00940000158800	ENSGT00730000110920.b.a.a
Goode s thornscrub tortoise	MODERN SPECIES	14	SH3GL1 (ENSGEVG00005007078) #11	MPND (ENSGEVG00005007164) #12	STAP2 (ENSGEVG00005007367) #13	FSD1 (ENSGEVG00005007416) #14	ENSGEVG00005007514	ENSGEVG00005007532	SHD (ENSGEVG00005007552) #16	YJU2 (ENSGEVG00005007572) #17	EBI3 (ENSGEVG00005007616) #18	ENSGEVG00005007658	ENSGEVG00005007684	ENSGEVG00005007710 #19	SIRT6 (ENSGEVG00005007810) #20	ENSGEVG00005007845	CREB3L3 (ENSGEVG00005007896) #21	MAP2K2 (ENSGEVG00005008031) #22	ZBTB7A (ENSGEVG00005008063) #23	PIAS4 (ENSGEVG00005008086) #24	EEF2 (ENSGEVG00005008117) #25	DAPK3 (ENSGEVG00005008155) #26	NMRK2 (ENSGEVG00005008195) #27	ATCAY (ENSGEVG00005008280) #28	ENSGEVG00005008323	NRTN (ENSGEVG00005008340)	DUS3L (ENSGEVG00005008360)	PRR22 (ENSGEVG00005008381)	ENSGEVG00005008408	ENSGEVG00005008437	RFX2 (ENSGEVG00005008484)	ACSBG2 (ENSGEVG00005008719)	MLLT1 (ENSGEVG00005008772)
Abingdon island giant tortoise	MODERN SPECIES		UBXN6 (ENSCABG00000001808) #9	CHAF1A (ENSCABG00000001784) #10	SH3GL1 (ENSCABG00000001777) #11	MPND (ENSCABG00000001772) #12	STAP2 (ENSCABG00000001769) #13	FSD1 (ENSCABG00000001768) #14	ENSCABG00000001765	SHD (ENSCABG00000001762) #16	YJU2 (ENSCABG00000001760) #17	EBI3 (ENSCABG00000001755) #18	ENSCABG00000001754 #19	ENSCABG00000001752 #19	SIRT6 (ENSCABG00000001750) #20	ENSCABG00000001748	CREB3L3 (ENSCABG00000001744) #21	MAP2K2 (ENSCABG00000001574) #22	ZBTB7A (ENSCABG00000001566) #23	PIAS4 (ENSCABG00000001521) #24	EEF2 (ENSCABG00000001509) #25	ENSCABG00000001506	ENSCABG00000001505 #27	ATCAY (ENSCABG00000001480) #28	ENSCABG00000001475	NRTN (ENSCABG00000001472)	DUS3L (ENSCABG00000001466)	PRR22 (ENSCABG00000001462)	ENSCABG00000001457	RFX2 (ENSCABG00000000813)	ACSBG2 (ENSCABG00000000769)	MLLT1 (ENSCABG00000000749)	ACER1 (ENSCABG00000000748)
Emydidae	ANCESTRAL SPECIES	14	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00950000186319	ENSGT00940000159004 #16	ENSGT00960000189486	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00990000205656	ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT01030000234534.B.a.a.a.a	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000163125	ENSGT00950000182993.A.a	ENSGT00550000075134	ENSGT00390000016128	ENSGT00940000166580	ENSGT01050000244879.a.a.a	ENSGT00940000155332.A	ENSGT00940000158800	ENSGT00730000110920.b.a.a
Three-toed box turtle	MODERN SPECIES	92	UBXN6 (ENSTMTG00000022422) #9	CHAF1A (ENSTMTG00000022431) #10	SH3GL1 (ENSTMTG00000022441) #11	MPND (ENSTMTG00000022449) #12	STAP2 (ENSTMTG00000022455) #13	FSD1 (ENSTMTG00000022465) #14	ENSTMTG00000022479	SHD (ENSTMTG00000022481) #16	ENSTMTG00000022484	YJU2 (ENSTMTG00000022488) #17	EBI3 (ENSTMTG00000022491) #18	ENSTMTG00000022494	SIRT6 (ENSTMTG00000022496) #20	ENSTMTG00000022498	CREB3L3 (ENSTMTG00000022502) #21	MAP2K2 (ENSTMTG00000022510) #22	ZBTB7A (ENSTMTG00000022512) #23	PIAS4 (ENSTMTG00000022514) #24	EEF2 (ENSTMTG00000022520) #25	DAPK3 (ENSTMTG00000022524) #26	NMRK2 (ENSTMTG00000022527) #27	ATCAY (ENSTMTG00000022532) #28	ENSTMTG00000022536	NRTN (ENSTMTG00000022537)	DUS3L (ENSTMTG00000022539)	PRR22 (ENSTMTG00000022541)	ENSTMTG00000022546	RFX2 (ENSTMTG00000022549)	ACSBG2 (ENSTMTG00000022558)	MLLT1 (ENSTMTG00000022560)	ACER1 (ENSTMTG00000022566)
painted turtle	MODERN SPECIES	712	HDGFL2 (ENSCPBG00000011057) #8	UBXN6 (ENSCPBG00000011061) #9	CHAF1A (ENSCPBG00000011068) #10	SH3GL1 (ENSCPBG00000011072) #11	MPND (ENSCPBG00000011078) #12	STAP2 (ENSCPBG00000011081) #13	FSD1 (ENSCPBG00000011083) #14	SHD (ENSCPBG00000011087) #16	YJU2 (ENSCPBG00000011090) #17	EBI3 (ENSCPBG00000011093) #18	ENSCPBG00000011094	ENSCPBG00000011099 #19	SIRT6 (ENSCPBG00000011103) #20	ENSCPBG00000011105	CREB3L3 (ENSCPBG00000011108) #21	MAP2K2 (ENSCPBG00000011109) #22	ZBTB7A (ENSCPBG00000011111) #23	PIAS4 (ENSCPBG00000011114) #24	EEF2 (ENSCPBG00000011117) #25	DAPK3 (ENSCPBG00000011124) #26	NMRK2 (ENSCPBG00000011129) #27	ATCAY (ENSCPBG00000011131) #28	ENSCPBG00000011134	NRTN (ENSCPBG00000011135)	DUS3L (ENSCPBG00000011136)	PRR22 (ENSCPBG00000011140)	ENSCPBG00000011144	RFX2 (ENSCPBG00000011147)	ACSBG2 (ENSCPBG00000011150)	MLLT1 (ENSCPBG00000011153)	ACER1 (ENSCPBG00000011158)
Chinese turtle	MODERN SPECIES	2055							SH3GL1 (ENSPSIG00000016203) #11	MPND (ENSPSIG00000015123) #12	FSD1 (ENSPSIG00000013953) #14	YJU2 (ENSPSIG00000012936) #17	EBI3 (ENSPSIG00000012065) #18	ANKRD24 (ENSPSIG00000010410) #19	SIRT6 (ENSPSIG00000008609) #20	ENSPSIG00000008323	CREB3L3 (ENSPSIG00000007295) #21	MAP2K2 (ENSPSIG00000005835) #22	ZBTB7A (ENSPSIG00000017106) #23	PIAS4 (ENSPSIG00000015561) #24	EEF2 (ENSPSIG00000011176) #25	DAPK3 (ENSPSIG00000010970) #26	NMRK2 (ENSPSIG00000010794) #27	ATCAY (ENSPSIG00000008108) #28	ENSPSIG00000000175
Lepidosauria	ANCESTRAL SPECIES	33	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000154737.c #11	ENSGT00940000160191 #12	ENSGT00530000063841.b #13	ENSGT00940000159440 #14	ENSGT00940000159004 #16	ENSGT00530000063615.a #17	ENSGT00940000160050 #18	ENSGT00940000159237 #19	ENSGT01000000215054	ENSGT00940000160088 #20	ENSGT01030000234534.B.a.a.a.a	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000154779.a.a	ENSGT00940000159842 #27	ENSGT00940000158364 #28	ENSGT00940000163125	ENSGT00950000182993.A.a	ENSGT00550000075134	ENSGT00390000016128	ENSGT01050000244879.a.a.a	ENSGT00940000155332.A	ENSGT00940000158800	ENSGT00730000110920.b.a.a
tuatara	MODERN SPECIES	1127	ENSSPUG00000010425 ##7	HDGFL2 (ENSSPUG00000010448) #8	UBXN6 (ENSSPUG00000010482) #9	CHAF1A (ENSSPUG00000010528) #10	SH3GL1 (ENSSPUG00000010563) #11	ENSSPUG00000010644 #12	STAP2 (ENSSPUG00000010751) #13	FSD1 (ENSSPUG00000010821) #14	SHD (ENSSPUG00000010859) #16	YJU2 (ENSSPUG00000010883) #17	EBI3 (ENSSPUG00000010892) #18	ENSSPUG00000010907 #19	SIRT6 (ENSSPUG00000010923) #20	ENSSPUG00000010936	CREB3L3 (ENSSPUG00000010942) #21	MAP2K2 (ENSSPUG00000010956) #22	ZBTB7A (ENSSPUG00000010974) #23	PIAS4 (ENSSPUG00000010985) #24	EEF2 (ENSSPUG00000011003) #25	DAPK3 (ENSSPUG00000011029) #26	ENSSPUG00000011042	NMRK2 (ENSSPUG00000011060) #27	ENSSPUG00000011066 #27	ATCAY (ENSSPUG00000011081) #28	ENSSPUG00000011097	NRTN (ENSSPUG00000011111)	DUS3L (ENSSPUG00000011128)	ENSSPUG00000011156	RFX2 (ENSSPUG00000011275)	ENSSPUG00000011809	MLLT1 (ENSSPUG00000011834)
Episquamata	ANCESTRAL SPECIES	50												ENSGT00940000159237 #19	ENSGT01000000215054	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT00940000166634	ENSGT01030000234539.a.a.a #24
Laterata	ANCESTRAL SPECIES	56															ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000154779.a.a	ENSGT00940000164644	ENSGT00940000160888	ENSGT00390000005847	ENSGT00940000165063	ENSGT00940000164521	ENSGT00390000006553	ENSGT00910000144227.s.a	ENSGT00940000161178	ENSGT00940000158364 #28	ENSGT00390000004172.s
Common wall lizard	MODERN SPECIES	9	ENSPMRG00000021679	ENSPMRG00000021687	PPP1R18 (ENSPMRG00000021692)	DHX16 (ENSPMRG00000021700)	C6orf136 (ENSPMRG00000021718)	ATAT1 (ENSPMRG00000021725)	MRPS18B (ENSPMRG00000021734)	ENSPMRG00000021739	PPP1R10 (ENSPMRG00000021748)	ABCF1 (ENSPMRG00000021774)	POLE4 (ENSPMRG00000021791)	ENSPMRG00000021796	GNL1 (ENSPMRG00000021811)	ENSPMRG00000021828	CREB3L3 (ENSPMRG00000021853) #21	MAP2K2 (ENSPMRG00000021863) #22	ZBTB7A (ENSPMRG00000021873) #23	PIAS4 (ENSPMRG00000021877) #24	EEF2 (ENSPMRG00000021887) #25	DAPK3 (ENSPMRG00000021899) #26	ENSPMRG00000021924	ENSPMRG00000021941	ENSPMRG00000021954	ENSPMRG00000021964	ENSPMRG00000022044	ENSPMRG00000022243	FEM1A (ENSPMRG00000022251)	TICAM1 (ENSPMRG00000022253)	ENSPMRG00000022261 ##7	ARRDC5 (ENSPMRG00000022267)	UHRF1 (ENSPMRG00000022277)
Argentine black and white tegu	MODERN SPECIES	94	GAMT (ENSSMRG00000016343)	NDUFS7 (ENSSMRG00000016344)	HCN2 (ENSSMRG00000016345)	POLRMT (ENSSMRG00000016346)	ENSSMRG00000016347	SBNO2 (ENSSMRG00000016348)	STK11 (ENSSMRG00000016349)	CBARP (ENSSMRG00000016350)	CIRBP (ENSSMRG00000016351)	MIDN (ENSSMRG00000016352)	ATP5F1D (ENSSMRG00000016353)	ENSSMRG00000016354	EFNA2 (ENSSMRG00000016355)	ENSSMRG00000016357	ENSSMRG00000016358	MAP2K2 (ENSSMRG00000016359) #22	ZBTB7A (ENSSMRG00000016360) #23	PIAS4 (ENSSMRG00000016361) #24	EEF2 (ENSSMRG00000016362) #25	ENSSMRG00000016364	ENSSMRG00000016365
Toxicofera	ANCESTRAL SPECIES	99													ENSGT00940000159237 #19	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT00940000166634	ENSGT01030000234539.a.a.a #24
Lizard	MODERN SPECIES	374																ENSACAG00000000286 #22
Elapidae	DUPLICATION
Elapidae	DUPLICATION
Elapidae	ANCESTRAL SPECIES	71									ENSGT00390000003488.a.b.a	ENSGT00390000000777	ENSGT00940000153321.b.a.t	ENSGT00940000153321.b.a.u	ENSGT01000000215054	ENSGT00940000160088 #20	ENSGT00940000159261 #21	ENSGT00940000153487.b.a.q.a #22	ENSGT00940000162053 #23	ENSGT00940000166634	ENSGT01030000234539.a.a.a #24
Indian cobra	MODERN SPECIES		FSD1 (ENSNNAG00000002240) #14	STAP2 (ENSNNAG00000002270) #13	MPND (ENSNNAG00000002302) #12	SH3GL1 (ENSNNAG00000002334) #11	CHAF1A (ENSNNAG00000002363) #10	UBXN6 (ENSNNAG00000002377) #9	ENSNNAG00000002386 #8	ENSNNAG00000002391	ENSNNAG00000002397	ENSNNAG00000002405	ENSNNAG00000002413	ENSNNAG00000002417	ANKRD24 (ENSNNAG00000002428) #19	SIRT6 (ENSNNAG00000002440) #20	CREB3L3 (ENSNNAG00000002452) #21	ENSNNAG00000002482 #22	ZBTB7A (ENSNNAG00000002492) #23	PIAS4 (ENSNNAG00000002501) #24	EEF2 (ENSNNAG00000002519) #25	DAPK3 (ENSNNAG00000002558) #26	ENSNNAG00000002566	ENSNNAG00000002577	ENSNNAG00000002600	ENSNNAG00000002674	ENSNNAG00000002684	ENSNNAG00000002692	ENSNNAG00000002708	ENSNNAG00000002720	ENSNNAG00000002731	ENSNNAG00000002741	ENSNNAG00000002753
Elapidae_a	ANCESTRAL SPECIES	135								ENSGT00390000003488.a.b.a	ENSGT00390000000777	ENSGT00940000153321.b.a.t	ENSGT00940000153321.b.a.u	ENSGT01000000215054	ENSGT00940000160088 #20	ENSGT00940000159237 #19	ENSGT00940000159261 #21	ENSGT00940000153487.b.a.q.a #22	ENSGT00940000162053 #23	ENSGT00940000166634	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000153424.a.a.d	ENSGT00940000154779.a.a
Acanthophiinae	ANCESTRAL SPECIES	142												ENSGT01000000215054	ENSGT00940000160088 #20	ENSGT00940000159237 #19	ENSGT00940000159261 #21	ENSGT00940000153487.b.a.q.a #22	ENSGT00940000162053 #23	ENSGT00940000166634	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000161753 #26	ENSGT00940000153424.a.a.d	ENSGT00940000154779.a.a
Mainland tiger snake	MODERN SPECIES	364														ENSNSUG00000010144	SIRT6 (ENSNSUG00000010142) #20	ENSNSUG00000010141 #22	ZBTB7A (ENSNSUG00000010140) #23	PIAS4 (ENSNSUG00000010139) #24	EEF2 (ENSNSUG00000010137) #25	DAPK3 (ENSNSUG00000010086) #26
Eastern brown snake	MODERN SPECIES	171									TNFAIP8L1 (ENSPTXG00000017715)	MYDGF (ENSPTXG00000017716)	ENSPTXG00000017717	ENSPTXG00000017718	ENSPTXG00000017719	ANKRD24 (ENSPTXG00000017721) #19	CREB3L3 (ENSPTXG00000017722) #21	MAP2K2 (ENSPTXG00000017723) #22	ENSPTXG00000017724 #23	ENSPTXG00000011168	PIAS4 (ENSPTXG00000011170) #24	ENSPTXG00000011171	ENSPTXG00000011174
Elapidae	ANCESTRAL SPECIES																	ENSGT00940000153487.b.a.q.b #22
Elapidae_a	ANCESTRAL SPECIES																	ENSGT00940000153487.b.a.q.b #22
Acanthophiinae	ANCESTRAL SPECIES																	ENSGT00940000153487.b.a.q.b #22
Mainland tiger snake	DUPLICATION
Mainland tiger snake	MODERN SPECIES	125			ENSNSUG00000007548	ENSNSUG00000007554	ENSNSUG00000007555	ENSNSUG00000007556	ENSNSUG00000007557	ENSNSUG00000007562	ENSNSUG00000007567	ENSNSUG00000007578	ENSNSUG00000007601	ENSNSUG00000007603	ENSNSUG00000008487	ENSNSUG00000008491	PRPF40A (ENSNSUG00000008493)	ENSNSUG00000008494 #22	ENSNSUG00000008495	ENSNSUG00000008496	ENSNSUG00000008519	ENSNSUG00000008520
Mainland tiger snake	MODERN SPECIES	124	ENSNSUG00000006991	ENSNSUG00000006993	ENSNSUG00000006995	ENSNSUG00000006996	ENSNSUG00000006997	ENSNSUG00000007000	ENSNSUG00000007012	ENSNSUG00000007030	ENSNSUG00000007037	ENSNSUG00000007038	ENSNSUG00000007040	ENSNSUG00000007393	ENSNSUG00000007412	ENSNSUG00000007421	ARL6IP6 (ENSNSUG00000007422)	ENSNSUG00000007423 #22	ENSNSUG00000007424	ENSNSUG00000007426	ENSNSUG00000007544
Indian cobra	MODERN SPECIES		ENSNNAG00000006910	LYPD6B (ENSNNAG00000006750)	LYPD6 (ENSNNAG00000006713)	MMADHC (ENSNNAG00000019078)	ENSNNAG00000019076	RND3 (ENSNNAG00000019074)	NMI (ENSNNAG00000019069)	TNFAIP6 (ENSNNAG00000019067)	NEB (ENSNNAG00000018647)	ARL5A (ENSNNAG00000018385)	CACNB4 (ENSNNAG00000018360)	STAM2 (ENSNNAG00000018344)	FMNL2 (ENSNNAG00000018336)	ARL6IP6 (ENSNNAG00000018331)	ENSNNAG00000018328	ENSNNAG00000018325 #22	ENSNNAG00000018324	ENSNNAG00000018322	GALNT13 (ENSNNAG00000018312)	KCNJ3 (ENSNNAG00000018307)	NR4A2 (ENSNNAG00000018303)	GPD2 (ENSNNAG00000018298)	ENSNNAG00000018296	CYTIP (ENSNNAG00000018295)	ACVR1C (ENSNNAG00000018291)	ACVR1 (ENSNNAG00000018290)	UPP2 (ENSNNAG00000018288)	CCDC148 (ENSNNAG00000018282)	PKP4 (ENSNNAG00000018276)	DAPL1 (ENSNNAG00000018273)	TANC1 (ENSNNAG00000018263)
Elapidae	ANCESTRAL SPECIES																	ENSGT00940000153487.b.a.r #22
Elapidae_a	ANCESTRAL SPECIES																	ENSGT00940000153487.b.a.r #22
Blue-lipped sea krait	MODERN SPECIES	9104																MAP2K2 (ENSLLTG00000010579) #22
Anura	ANCESTRAL SPECIES	197																ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23	ENSGT01030000234539.a.a.a #24	ENSGT00940000154662 #25	ENSGT00940000158364 #28	ENSGT00940000160775 #30	ENSGT00950000182938.b.b.b.b.b.a	ENSGT00940000163917.b	ENSGT00390000001201 #32	ENSGT00940000160384 #33	ENSGT00940000160036 #34	ENSGT00940000159258 #35	ENSGT00950000183102.B ##36	ENSGT01030000234559.a.a.a #37	ENSGT00390000003420.b	ENSGT00940000161213
Leishan spiny toad	DUPLICATION
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	8	ENSLLEG00000021560	ENSLLEG00000021602	ENSLLEG00000021646	ENSLLEG00000021855	MC4R (ENSLLEG00000011826)	C5orf22 (ENSLLEG00000011880)	DROSHA (ENSLLEG00000012129)	CDH6 (ENSLLEG00000012511)	ENSLLEG00000012591	ENSLLEG00000012612	ENSLLEG00000012632	ENSLLEG00000012660	CDH9 (ENSLLEG00000012695)	ENSLLEG00000012816	ENSLLEG00000012829	ENSLLEG00000012847 #22	CDH10 (ENSLLEG00000012889)	ENSLLEG00000013098	ENSLLEG00000013141	ENSLLEG00000013184	ENSLLEG00000013196	ENSLLEG00000013265	ENSLLEG00000013286	ENSLLEG00000013316	CDH12 (ENSLLEG00000013338)	ENSLLEG00000013489	ENSLLEG00000013506	CDH18 (ENSLLEG00000013553)	ENSLLEG00000013707	BASP1 (ENSLLEG00000013754)	MYO10 (ENSLLEG00000013821)
Leishan spiny toad	MODERN SPECIES	2	ENSLLEG00000008683	ENSLLEG00000008806	ENSLLEG00000010502	ENSLLEG00000010529	PPP6R1 (ENSLLEG00000010593)	HSPBP1 (ENSLLEG00000011041)	ENSLLEG00000011177	ENSLLEG00000011381	TMEM150B (ENSLLEG00000011417)	KMT5C (ENSLLEG00000011497)	ENSLLEG00000011558	ENSLLEG00000011576	BCAT2 (ENSLLEG00000011616)	HSD17B14 (ENSLLEG00000011697)	ENSLLEG00000011759	ENSLLEG00000012012 #22	KCNJ14 (ENSLLEG00000013122)	ENSLLEG00000013150	ENSLLEG00000013194	ENSLLEG00000013569	ENSLLEG00000013878	ENSLLEG00000013958	LMTK3 (ENSLLEG00000014127)	ENSLLEG00000014250	ENSLLEG00000014292	GRWD1 (ENSLLEG00000014350)	GRIN2D (ENSLLEG00000014407)	ENSLLEG00000014494	ENSLLEG00000014520	KDELR1 (ENSLLEG00000014551)	TMEM143 (ENSLLEG00000014662)
Leishan spiny toad	MODERN SPECIES		APBA3 (ENSLLEG00000005030) #33	ENSLLEG00000004137	MRPL54 (ENSLLEG00000004133) #32	ENSLLEG00000004130	ENSLLEG00000004129	ATCAY (ENSLLEG00000004102) #28	ENSLLEG00000004087	ENSLLEG00000004084	ENSLLEG00000004080	ENSLLEG00000004075	ENSLLEG00000004068	ENSLLEG00000004060	ENSLLEG00000004051	LSM4 (ENSLLEG00000004045)	ENSLLEG00000004042	ENSLLEG00000004022 #22	ENSLLEG00000004002	ZBTB7A (ENSLLEG00000003998) #23	ENSLLEG00000003988 #24	ENSLLEG00000003980	ENSLLEG00000003974	ENSLLEG00000003910 #25	ENSLLEG00000003879	ENSLLEG00000003871	ENSLLEG00000003862	NOA1 (ENSLLEG00000003839)	ENSLLEG00000003667	ENSLLEG00000003594	ENSLLEG00000003586	ENSLLEG00000003578	UHRF1 (ENSLLEG00000003444)
Coelacanth	MODERN SPECIES	723							STAP2 (ENSLACG00000002248) #13	FSD1 (ENSLACG00000003071) #14	SHD (ENSLACG00000005422) #16	YJU2 (ENSLACG00000006741) #17	EBI3 (ENSLACG00000007004) #18	ANKRD24 (ENSLACG00000007315) #19	SIRT6 (ENSLACG00000007794) #20	rxfp3.2b (ENSLACG00000008427)	CREB3L3 (ENSLACG00000009185) #21	MAP2K2 (ENSLACG00000009760) #22	ZBTB7A (ENSLACG00000010404) #23	ENSLACG00000010819	PIAS4 (ENSLACG00000010963) #24	ENSLACG00000011124 #25	ATCAY (ENSLACG00000011669) #28	ZFR2 (ENSLACG00000012528) #29	MATK (ENSLACG00000013081) #30	rx1 (ENSLACG00000013485)	malt2 (ENSLACG00000013659)	MRPL54 (ENSLACG00000013912) #32	APBA3 (ENSLACG00000013941) #33	TJP3 (ENSLACG00000014070) #34	PIP5K1C (ENSLACG00000014534) #35	cactin (ENSLACG00000014782) ##36	TBXA2R (ENSLACG00000015049) #37
Actinopterygii	ANCESTRAL SPECIES	918																ENSGT00940000153487.b.a #22	ENSGT00940000162053 #23
Neopterygii	ANCESTRAL SPECIES	172						ENSGT00390000005235	ENSGT00720000108823	ENSGT00390000006337	ENSGT00940000159808	ENSGT00390000006809	ENSGT00940000164500	ENSGT00940000160463	ENSGT00950000183103.d.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a #24	ENSGT00940000153487.b.a #22	ENSGT00940000166752	ENSGT00940000157036	ENSGT00390000018299	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905	ENSGT01100000264330	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000159179	ENSGT00940000159261 #21	ENSGT00940000160088 #20	ENSGT01030000234534.B.a.a.a.a
Spotted gar	MODERN SPECIES	657	CPAMD8 (ENSLOCG00000005716)	odf3l2a (ENSLOCG00000005731)	cks2 (ENSLOCG00000005754)	shc2 (ENSLOCG00000005770)	ENSLOCG00000005794	DOT1L (ENSLOCG00000005809)	sf3a2 (ENSLOCG00000005835)	ENSLOCG00000005854	oaz1a (ENSLOCG00000005874)	org (ENSLOCG00000005893)	lingo3a (ENSLOCG00000017635)	ENSLOCG00000005917	ONECUT3 (ENSLOCG00000005935)	foxq2 (ENSLOCG00000005947)	pias4a (ENSLOCG00000005962) #24	map2k2a (ENSLOCG00000005968) #22	ENSLOCG00000005993	tcf3a (ENSLOCG00000006013)	MBD3 (ENSLOCG00000006043)	mbd3b (ENSLOCG00000006065)	ENSLOCG00000006087	hmg20b (ENSLOCG00000006147)	btbd2a (ENSLOCG00000006170)	eef2b (ENSLOCG00000006185) #25	creb3l3a (ENSLOCG00000006221) #21	rxfp3.2b (ENSLOCG00000017636)	ANKRD24 (ENSLOCG00000006239) #19	ENSLOCG00000006256 #18	shda (ENSLOCG00000006271) #16	s1pr3a (ENSLOCG00000017637)	ENSLOCG00000006291
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES	199				ENSGT00500000045074	ENSGT00390000005235	ENSGT00720000108823	ENSGT00940000159808	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00390000018299	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT01100000264330	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000159179.h	ENSGT00940000159179.g	ENSGT00940000159261.d.a #21	ENSGT01030000234534.B.a.a.a.a.a.a
Clupeocephala	ANCESTRAL SPECIES	125	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00390000012355.A.b	ENSGT00940000155914.c.b	ENSGT00390000018395	ENSGT00500000045074	ENSGT00390000005235	ENSGT00720000108823	ENSGT00410000028808	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a	ENSGT00940000157036.f	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000157036.e.a	ENSGT00390000018299	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000159179.g	ENSGT00940000154662.d #25	ENSGT00940000159261.d.b #21	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088 #20	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a	ENSGT00940000158050
Otomorpha	ANCESTRAL SPECIES	5	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT00990000206265	ENSGT01030000236343	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT01100000264042	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000161905.a	ENSGT00940000166909	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000159179.h	ENSGT00940000159261.d.a #21	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000154716.hc.b	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a
Otophysi	ANCESTRAL SPECIES	52	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT00990000206265	ENSGT01030000236343	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT01100000264042	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000161905.a	ENSGT00940000166909	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000159179.h	ENSGT00940000159261.d.a #21	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000154716.hc.b	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a
Characiphysae	ANCESTRAL SPECIES	28	ENSGT01030000234519.e.a.a.b.a.a.b.b.a	ENSGT01030000234519.e.a.a.b.b.a.b.g	ENSGT01030000234519.e.a.a.b.b.a.b.h	ENSGT01030000234519.e.a.a.b.a.a.b.b.b.a	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.b.f	ENSGT00940000162569.b.k.a	ENSGT00940000165296	ENSGT00940000161259.B.a	ENSGT00940000164811.a.a	ENSGT00550000075067	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000166572	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT01100000264042	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161905.a	ENSGT00940000166909	ENSGT00940000161213	ENSGT00940000159179.h	ENSGT00940000159261.d.a #21	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487
Channel catfish	MODERN SPECIES	1	klc4 (ENSIPUG00000001836)	ENSIPUG00000001808	tle2a (ENSIPUG00000001748)	ENSIPUG00000001716	ENSIPUG00000001703	tle5 (ENSIPUG00000001688)	gna11a (ENSIPUG00000001673)	gna15.4 (ENSIPUG00000001668)	C2CD4C (ENSIPUG00000001665)	ap3d1 (ENSIPUG00000001409)	hdgfl2 (ENSIPUG00000001382) #8	UBXN6 (ENSIPUG00000001356) #9	chaf1a (ENSIPUG00000001333) #10	scamp4 (ENSIPUG00000001316)	pias4 (ENSIPUG00000001271) #24	map2k2a (ENSIPUG00000001241) #22	ENSIPUG00000001238	tcf3b (ENSIPUG00000001114)	MBD3 (ENSIPUG00000001096)	mbd3b (ENSIPUG00000001063)	unc13a (ENSIPUG00000001021)	hmg20b (ENSIPUG00000000999)	btbd2a (ENSIPUG00000000969)	ENSIPUG00000000950 #25	creb3l3a (ENSIPUG00000000934) #21	rxfp3.2b (ENSIPUG00000000930)	celf5 (ENSIPUG00000000913)	rgmd (ENSIPUG00000000897)	hsd11b1l (ENSIPUG00000000890)	c10h19orf70 (ENSIPUG00000000885)	ENSIPUG00000000873
Characiphysae_b	ANCESTRAL SPECIES	25		ENSGT01030000234519.e.a.a.b.b.a.b.h	ENSGT01030000234519.e.a.a.b.b.a.b.g	ENSGT01030000234519.e.a.a.b.a.a.b.b.a	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.b.f	ENSGT00940000162569.b.k.a	ENSGT00940000165296	ENSGT00940000161259.B.a	ENSGT00940000164811.a.a	ENSGT00550000075067	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000166572	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00390000018299.a	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161905.a	ENSGT00940000166909	ENSGT00940000161213	ENSGT00940000159179.h	ENSGT00940000159261.d.a #21	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487
Characoidei	ANCESTRAL SPECIES	223			ENSGT01030000234519.e.a.a.b.b.a.b.h	ENSGT01030000234519.e.a.a.b.b.a.b.g	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.b.f	ENSGT00940000162569.b.k.a	ENSGT00940000165296	ENSGT00940000161259.B.a	ENSGT00940000164811.a.a	ENSGT00550000075067	ENSGT00940000153942.a.f #8	ENSGT00940000157273 #9	ENSGT00440000034888 #10	ENSGT00940000166572	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT01100000264042	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000154929.B
Red-bellied piranha	MODERN SPECIES	82	plpp2b (ENSPNAG00000018445)	tle2a (ENSPNAG00000018400)	ENSPNAG00000018379	tle5 (ENSPNAG00000018350)	gna11a (ENSPNAG00000018340)	gna15.4 (ENSPNAG00000018305)	ENSPNAG00000018296	C2CD4C (ENSPNAG00000018287)	cdc34a (ENSPNAG00000018281)	ap3d1 (ENSPNAG00000003512)	hdgfl2 (ENSPNAG00000017800) #8	ubxn6 (ENSPNAG00000017694) #9	chaf1a (ENSPNAG00000017687) #10	scamp4 (ENSPNAG00000017680)	pias4a (ENSPNAG00000017645) #24	map2k2a (ENSPNAG00000017601) #22	ENSPNAG00000017546	tcf3b (ENSPNAG00000017522)	ENSPNAG00000017417	ENSPNAG00000017398	mbd3b (ENSPNAG00000017371)	ENSPNAG00000003473	smim7 (ENSPNAG00000016898)	tmem38a (ENSPNAG00000016881)	comp (ENSPNAG00000016853)	CRTC1 (ENSPNAG00000016779)	klhl26 (ENSPNAG00000016708)	ddx49 (ENSPNAG00000003429)	lsm4 (ENSPNAG00000016598)	rab3ab (ENSPNAG00000016566)	ENSPNAG00000016529
Electric eel	MODERN SPECIES	685									cdc34a (ENSEEEG00000013928)	ap3d1 (ENSEEEG00000013917)	hdgfl2 (ENSEEEG00000013905) #8	ubxn6 (ENSEEEG00000013903) #9	chaf1a (ENSEEEG00000013900) #10	scamp4 (ENSEEEG00000013899)	pias4a (ENSEEEG00000013886) #24	map2k2a (ENSEEEG00000013748) #22	ENSEEEG00000013728	tcf3b (ENSEEEG00000013710)	UQCR11 (ENSEEEG00000013707)	ENSEEEG00000013677	ENSEEEG00000013674
Cyprinoidei	ANCESTRAL SPECIES	17	ENSGT00950000183049.C.a.a	ENSGT00940000156705	ENSGT00940000155914.c.a.c	ENSGT00390000013515	ENSGT00390000006337	ENSGT00990000206265	ENSGT00940000159808.c	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT01100000264042	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000161905.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000159179.h	ENSGT00940000159261.d.a #21	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000154716.hc.b	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	113	ENSGT00950000182870.a.a.a.a.h	ENSGT00940000166035.g.b	ENSGT00390000008279.b.j	ENSGT00950000183049.C.a.a.g.a	ENSGT00940000156705.d	ENSGT00940000155914.c.a.c.a	ENSGT00390000013515.e	ENSGT00390000006337.b	ENSGT00940000159808.d	ENSGT00390000006809.a	ENSGT00940000164500.b.a	ENSGT00940000164108.b.a.a	ENSGT00950000183103.d.b.a.b.d	ENSGT00940000166634.a	ENSGT01030000234539.a.a.a.f.e #24	ENSGT00940000153487.b.a.s.a.a #22	ENSGT00940000166752.d	ENSGT00940000157036.e.a.b	ENSGT00940000157036.e.a.a.b	ENSGT01100000264042	ENSGT00950000183005.b.b.a	ENSGT00940000155402.a.a.d
Cyprininae_a	ANCESTRAL SPECIES	543									ENSGT00940000159808.d	ENSGT00390000006809.a	ENSGT00940000164500.b.a	ENSGT00940000164108.b.a.a	ENSGT00950000183103.d.b.a.b.d	ENSGT00940000166634.a	ENSGT01030000234539.a.a.a.f.e #24	ENSGT00940000153487.b.a.s.a.a #22	ENSGT00940000166752.d	ENSGT00940000157036.e.a.a.b	ENSGT01100000264042	ENSGT00950000183005.b.b.a	ENSGT00940000155402.a.a.d
Golden-line barbel	MODERN SPECIES	80	ssbp4 (ENSSGRG00000031232)	ENSSGRG00000031231	fkbp8 (ENSSGRG00000031230)	ENSSGRG00000031229	ell (ENSSGRG00000031228)	DOT1L (ENSSGRG00000030620)	amh (ENSSGRG00000030600)	ENSSGRG00000030599	OAZ1 (ENSSGRG00000030597)	org (ENSSGRG00000030593)	lingo3a (ENSSGRG00000030591)	nfil3-4 (ENSSGRG00000030590)	ENSSGRG00000030585	foxq2 (ENSSGRG00000030584)	pias4a (ENSSGRG00000030505) #24	map2k2a (ENSSGRG00000030424) #22	tcf3b (ENSSGRG00000030421)	ENSSGRG00000030420	ENSSGRG00000030356	mbd3b (ENSSGRG00000030352)	ENSSGRG00000030350	ENSSGRG00000027989	hmg20b (ENSSGRG00000027974)	btbd2a (ENSSGRG00000027933)	ENSSGRG00000027922	creb3l3a (ENSSGRG00000027920) #21	rxfp3.2b (ENSSGRG00000027917)	celf5a (ENSSGRG00000027814)	hsd11b1la (ENSSGRG00000027808)	micos13 (ENSSGRG00000027807)	ENSSGRG00000027803
Common carp reference	MODERN SPECIES	43	rex1bd (ENSCCRG00000013600)	crlf1b (ENSCCRG00000013604)	tmem59l (ENSCCRG00000043131)	ssbp4 (ENSCCRG00000074172)	fkbp8 (ENSCCRG00000066292)	ell (ENSCCRG00000006843)	ENSCCRG00000013709	oaz1a (ENSCCRG00000075310)	org (ENSCCRG00000012483)	lingo3a (ENSCCRG00000059109)	nfil3-4 (ENSCCRG00000081096)	ENSCCRG00000075061	ENSCCRG00000037829	ENSCCRG00000060562	pias4a (ENSCCRG00000074259) #24	map2k2a (ENSCCRG00000012624) #22	ENSCCRG00000013530	tcf3b (ENSCCRG00000013163)	ENSCCRG00000013220	unc13a (ENSCCRG00000017112)	btbd2a (ENSCCRG00000020922)	creb3l3a (ENSCCRG00000076475) #21	rxfp3.2b (ENSCCRG00000063036)	celf5a (ENSCCRG00000038101)	rgmd (ENSCCRG00000038208)	hsd11b1la (ENSCCRG00000008075)	micos13 (ENSCCRG00000008137)	ENSCCRG00000013739	ENSCCRG00000008081	ENSCCRG00000008087	ENSCCRG00000008141
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	41	creb3l3a (ENSCARG00000048493) #21	btbd2a (ENSCARG00000048422)	hmg20b (ENSCARG00000048390)	ENSCARG00000047047	ssbp4 (ENSCARG00000038496)	fkbp8 (ENSCARG00000038126)	ell (ENSCARG00000037628)	DOT1L (ENSCARG00000034904)	oaz1a (ENSCARG00000034806)	org (ENSCARG00000034797)	lingo3a (ENSCARG00000034795)	nfil3-4 (ENSCARG00000034791)	ENSCARG00000034787	foxq2 (ENSCARG00000034784)	pias4a (ENSCARG00000034726) #24	map2k2a (ENSCARG00000034521) #22	ENSCARG00000034500	ENSCARG00000034489	ENSCARG00000034482	ENSCARG00000034471	fgf22 (ENSCARG00000034453)	POLRMT (ENSCARG00000034214)	HCN2 (ENSCARG00000034062)	bsg (ENSCARG00000034046)	fstl3 (ENSCARG00000034005)	CBARP (ENSCARG00000033977)	atp5f1d (ENSCARG00000033950)	midn (ENSCARG00000033931)	cirbpb (ENSCARG00000033908)	ENSCARG00000044991	ENSCARG00000044919
Goldfish	MODERN SPECIES	2914														foxq2 (ENSCARG00000062598)	pias4a (ENSCARG00000062636) #24	map2k2a (ENSCARG00000062735) #22
Cyprininae	ANCESTRAL SPECIES	321	ENSGT00950000183049.C.a.a.g.b	ENSGT00940000156705.c	ENSGT00940000155914.c.a.c.b	ENSGT00390000013515.f	ENSGT00390000006337.a	ENSGT00990000206265	ENSGT00940000159808.c	ENSGT00390000006809.b	ENSGT00940000164500.b.b	ENSGT00940000164108.b.a.b	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b.c	ENSGT00940000166634.b	ENSGT01030000234539.a.a.a.f.f #24	ENSGT00940000153487.b.a.s.a.b #22	ENSGT00940000166752.c	ENSGT00940000157036.e.a.a.a	ENSGT00390000018299	ENSGT00950000183005.b.b.b	ENSGT00940000155402.a.a.c	ENSGT00940000154929.B	ENSGT00940000161213.b	ENSGT00940000161905.a.b	ENSGT00940000166909	ENSGT00940000161213.a	ENSGT00940000159179.h.b
Cyprininae_a	ANCESTRAL SPECIES	40	ENSGT00950000183049.C.a.a.g.a	ENSGT00940000156705.d	ENSGT00940000155914.c.a.c.a	ENSGT00390000013515.e	ENSGT00390000006337.b	ENSGT00990000206265	ENSGT00940000159808.c	ENSGT00390000006809.b	ENSGT00940000164500.b.b	ENSGT00940000164108.b.a.b	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b.c	ENSGT00940000166634.b	ENSGT01030000234539.a.a.a.f.f #24	ENSGT00940000153487.b.a.s.a.b #22	ENSGT00940000166752.c	ENSGT00940000157036.e.a.a.a	ENSGT00390000018299	ENSGT00950000183005.b.b.b	ENSGT00940000155402.a.a.c	ENSGT00940000154929.B	ENSGT00940000161213.b	ENSGT00940000161905.a.b	ENSGT00940000161213.a	ENSGT00940000159179.h.b	ENSGT00940000159261.d.a.a #21	ENSGT01030000234534.B.a.a.a.a.a.a.c	ENSGT00940000154716.hc.b	ENSGT00940000154201.a.a.b.d.n.a	ENSGT00950000183112.b.a.a.a.a
Golden-line barbel	MODERN SPECIES	223								lingo3a (ENSSGRG00000048426)	lingo3a (ENSSGRG00000048425)	nfil3-4 (ENSSGRG00000048424)	nfil3-4 (ENSSGRG00000048423)	ENSSGRG00000048421	ENSSGRG00000048420	foxq2 (ENSSGRG00000048419)	pias4a (ENSSGRG00000048371) #24	map2k2a (ENSSGRG00000047841) #22	ENSSGRG00000047814	tcf3b (ENSSGRG00000047803)	UQCR11 (ENSSGRG00000047795)	ENSSGRG00000047793	unc13a (ENSSGRG00000047771)	hmg20b (ENSSGRG00000047767)	btbd2a (ENSSGRG00000047765)	ENSSGRG00000047764 #25	ENSSGRG00000047762	creb3l3a (ENSSGRG00000047761) #21	rxfp3.2b (ENSSGRG00000047760)	ENSSGRG00000047758	celf5a (ENSSGRG00000047757)	ENSSGRG00000047756	rgmd (ENSSGRG00000047755)
Common carp reference	MODERN SPECIES	5	crlf1b (ENSCCRG00000065430)	ssbp4 (ENSCCRG00000006791)	fkbp8 (ENSCCRG00000006820)	ell (ENSCCRG00000059038)	ENSCCRG00000012505	amh (ENSCCRG00000072618)	ENSCCRG00000078544	org (ENSCCRG00000012537)	lingo3a (ENSCCRG00000060670)	nfil3-4 (ENSCCRG00000059003)	ENSCCRG00000077658	ENSCCRG00000074375	ENSCCRG00000064529	foxq2 (ENSCCRG00000013528)	pias4a (ENSCCRG00000012580) #24	map2k2a (ENSCCRG00000074928) #22	ENSCCRG00000013144	tcf3b (ENSCCRG00000057954)	mbd3b (ENSCCRG00000013540)	unc13a (ENSCCRG00000000378)	hmg20b (ENSCCRG00000075760)	btbd2a (ENSCCRG00000001875)	ENSCCRG00000057993 #25	creb3l3a (ENSCCRG00000071938) #21	rxfp3.2b (ENSCCRG00000074916)	celf5a (ENSCCRG00000008023)	rgmd (ENSCCRG00000072729)	hsd11b1la (ENSCCRG00000012407)	micos13 (ENSCCRG00000012405)	ENSCCRG00000038663	ENSCCRG00000038649
Zebrafish	MODERN SPECIES	14	ell (ENSDARG00000000568)	DOT1L (ENSDARG00000061992)	amh (ENSDARG00000014357)	ENSDARG00000092274	ENSDARG00000101128	oaz1a (ENSDARG00000071403)	ENSDARG00000094273	org (ENSDARG00000076474)	lingo3a (ENSDARG00000061970)	nfil3-4 (ENSDARG00000092346)	ENSDARG00000071398	ENSDARG00000042285	ENSDARG00000056395	foxq2 (ENSDARG00000071394)	pias4a (ENSDARG00000007081) #24	map2k2a (ENSDARG00000006609) #22	ENSDARG00000039899	tcf3b (ENSDARG00000099999)	mbd3b (ENSDARG00000061810)	unc13a (ENSDARG00000061829)	hmg20b (ENSDARG00000042045)	btbd2a (ENSDARG00000042091)	eef2a.2 (ENSDARG00000042065)	eef2a.1 (ENSDARG00000042094)	creb3l3a (ENSDARG00000056226) #21	rxfp3.2b (ENSDARG00000061846)	celf5a (ENSDARG00000071375)	rgmd (ENSDARG00000034013)	hsd11b1la (ENSDARG00000071377)	micos13 (ENSDARG00000071378)	ENSDARG00000116690
Clupeiformes	ANCESTRAL SPECIES	9	ENSGT00940000161471	ENSGT00440000033811	ENSGT00980000199199	ENSGT00390000003428	ENSGT00390000010172	ENSGT00940000157990.a.b	ENSGT00940000166379	ENSGT00940000160062.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00950000183103.d.b.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000157036.e.a	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000159179.h	ENSGT00940000159261.d.a #21	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629	ENSGT00910000144271.A	ENSGT00910000144271.B.b	ENSGT00940000161721
Denticle herring	MODERN SPECIES	4	ENSDCDG00000023493	cracd (ENSDCDG00000023487)	AASDH (ENSDCDG00000023475)	ENSDCDG00000023467	ppat (ENSDCDG00000023425)	paics (ENSDCDG00000023101)	ENSDCDG00000023086	nrl (ENSDCDG00000023077)	REM2 (ENSDCDG00000023076)	nfil3-4 (ENSDCDG00000023074)	ENSDCDG00000023072	ENSDCDG00000022714	ENSDCDG00000022679	foxq2 (ENSDCDG00000022678)	pias4a (ENSDCDG00000022674) #24	map2k2a (ENSDCDG00000022451) #22	tcf3b (ENSDCDG00000022089)	ENSDCDG00000021970	mbd3b (ENSDCDG00000021719)	ENSDCDG00000020439	hmg20b (ENSDCDG00000020396)	btbd2a (ENSDCDG00000020007)	rxfp3.2b (ENSDCDG00000019989)	celf5a (ENSDCDG00000019814)	rgmd (ENSDCDG00000019797)	hsd11b1la (ENSDCDG00000019795)	micos13 (ENSDCDG00000019793)	si:dkey-10o6.2 (ENSDCDG00000019790)	ENSDCDG00000019789	ENSDCDG00000019755	fgf22 (ENSDCDG00000019751)
Euteleosteomorpha	ANCESTRAL SPECIES	64	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235	ENSGT00720000108823	ENSGT00410000028808	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a	ENSGT00940000157036.f	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000157036.e.a	ENSGT00390000018299	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000159179.g	ENSGT00940000154662.d #25	ENSGT00940000159261.d.b #21	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088 #20	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B ##36	ENSGT00940000165656	ENSGT00530000063841.b.b #13	ENSGT00940000154737.c.g #11
Acanthomorphata	ANCESTRAL SPECIES	11	ENSGT00390000013515	ENSGT00390000006337	ENSGT00990000206265	ENSGT01030000236343	ENSGT00940000179866	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00970000193487	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000161905.a	ENSGT00940000166909	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c #25	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a #21	ENSGT00940000164119	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291
Euacanthomorphacea	ANCESTRAL SPECIES	9	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT00990000206265	ENSGT00940000179866	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00970000193487	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000161905.a	ENSGT00940000166909	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c #25	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a #21	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a
Percomorphaceae	ANCESTRAL SPECIES	12	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT00990000206265	ENSGT00940000179866	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00970000193487	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000161905.a	ENSGT00940000166909	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c #25	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a #21	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a
Percomorphaceae_B	ANCESTRAL SPECIES	9	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT00990000206265	ENSGT00940000179866	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00970000193487	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000161905.a	ENSGT00940000166909	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c #25	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a #21	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a
Ovalentaria	ANCESTRAL SPECIES	9	ENSGT00390000013515	ENSGT00390000006337	ENSGT00990000206265	ENSGT01030000236343	ENSGT00940000179866	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00970000193487	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000161905.a	ENSGT00940000166909	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c #25	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a #21	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a
Atherinomorphae	ANCESTRAL SPECIES	7	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT00990000206265	ENSGT01030000236343	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00970000193487	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c #25	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a #21	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629
Oryzias	ANCESTRAL SPECIES	5		ENSGT00390000008279.b	ENSGT00950000183049.C.a.a	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT00940000159808	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c #25	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a #21	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629	ENSGT00950000182925.C.a.b
Oryzias_a	ANCESTRAL SPECIES	14	ENSGT00940000157375.c	ENSGT00390000008279.b	ENSGT00950000183049.C.a.a	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT00940000159808	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c #25	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a #21	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487.j	ENSGT00390000002629	ENSGT00950000182925.C.a.b
Chinese medaka	MODERN SPECIES	704								ENSOSIG00000007367	DOT1L (ENSOSIG00000007376)	amh (ENSOSIG00000008970)	lingo3a (ENSOSIG00000009340)	ENSOSIG00000009341	ENSOSIG00000009342	ONECUT3 (ENSOSIG00000009343)	pias4a (ENSOSIG00000009344) #24	map2k2a (ENSOSIG00000009348) #22	ENSOSIG00000009601	ENSOSIG00000009602	tcf3b (ENSOSIG00000009603)	UQCR11 (ENSOSIG00000009604)	ENSOSIG00000009605	mbd3b (ENSOSIG00000009626)	hmg20b (ENSOSIG00000009948)	ENSOSIG00000009949 #25
Japanese Medaka HdrR	MODERN SPECIES	18	arhgef18b (ENSORLG00000028828)	tmem59l (ENSORLG00000028151)	ssbp4 (ENSORLG00000005123)	fkbp8 (ENSORLG00000005099)	ell (ENSORLG00000005084)	DOT1L (ENSORLG00000005068)	amh (ENSORLG00000005044)	oaz1a (ENSORLG00000005036)	org (ENSORLG00000025930)	lingo3a (ENSORLG00000005032)	ENSORLG00000030341	ENSORLG00000005022	ONECUT3 (ENSORLG00000004983)	foxq2 (ENSORLG00000004973)	pias4a (ENSORLG00000004970) #24	map2k2a (ENSORLG00000004940) #22	ENSORLG00000028662	tcf3b (ENSORLG00000004923)	ENSORLG00000027720	ENSORLG00000026605	ENSORLG00000004850	ENSORLG00000030395	mbd3b (ENSORLG00000004814)	ENSORLG00000004741	hmg20b (ENSORLG00000004640)	ENSORLG00000004622 #25	rxfp3.2b (ENSORLG00000028731)	creb3l3a (ENSORLG00000004610) #21	celf5a (ENSORLG00000004600)	ENSORLG00000028796	rgmd (ENSORLG00000004588)
Oryzias_b	ANCESTRAL SPECIES	15				ENSGT00390000008279.b	ENSGT00950000183049.C.a.a	ENSGT00940000156705	ENSGT00390000013515	ENSGT00390000006337	ENSGT00940000159808	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000157036.e.a	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000161905.a	ENSGT00940000166909	ENSGT00940000161213	ENSGT00940000154662.c #25	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a #21	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a	ENSGT00390000002629	ENSGT00950000182925.C.a.b	ENSGT00940000162487	ENSGT00940000162161.A
Indian medaka	MODERN SPECIES	34	fkbp8 (ENSOMEG00000004564)	DOT1L (ENSOMEG00000004592)	amh (ENSOMEG00000004606)	ENSOMEG00000004621	ENSOMEG00000004630	org (ENSOMEG00000004666)	lingo3a (ENSOMEG00000004678)	ENSOMEG00000004684	ENSOMEG00000004692	ENSOMEG00000004699	ATP8B3 (ENSOMEG00000004754)	ONECUT3 (ENSOMEG00000004789)	ENSOMEG00000004801	foxq2 (ENSOMEG00000004808)	pias4a (ENSOMEG00000004827) #24	map2k2a (ENSOMEG00000004857) #22	ENSOMEG00000004865	atp5f1d (ENSOMEG00000004878)	rex1bd (ENSOMEG00000004895)	FAM78B (ENSOMEG00000004903)	slc35a3a (ENSOMEG00000004927)	notch2 (ENSOMEG00000004979)	sec22bb (ENSOMEG00000005026)	npl (ENSOMEG00000005052)	EDEM3 (ENSOMEG00000005104)	ENSOMEG00000005122	colgalt2b (ENSOMEG00000005177)	ptgfr (ENSOMEG00000005198) ##37	st6galnac5b (ENSOMEG00000005212)	ENSOMEG00000000113	ENSOMEG00000005245
Cyprinodontiformes	ANCESTRAL SPECIES	7	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT01030000236343	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00970000193487	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000161905.a	ENSGT00940000161213	ENSGT00940000154662.c #25	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a #21	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629	ENSGT00950000182925.C.a.b
Aplocheiloidei	ANCESTRAL SPECIES	3	ENSGT00390000008279.b	ENSGT00950000183049.C.a.a	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT01100000264042	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c #25	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a #21	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629	ENSGT00950000182925.C.a.b
Mangrove rivulus	MODERN SPECIES	8	tmem59l (ENSKMAG00000002932)	ssbp4 (ENSKMAG00000002949)	fkbp8 (ENSKMAG00000002964)	ell (ENSKMAG00000002974)	DOT1L (ENSKMAG00000002991)	amh (ENSKMAG00000003028)	oaz1a (ENSKMAG00000003091)	ENSKMAG00000003113	org (ENSKMAG00000003127)	lingo3a (ENSKMAG00000003141)	nfil3-4 (ENSKMAG00000003148)	ENSKMAG00000003171	ONECUT3 (ENSKMAG00000003238)	foxq2 (ENSKMAG00000003247)	pias4a (ENSKMAG00000003261) #24	map2k2a (ENSKMAG00000003286) #22	ENSKMAG00000003340	tcf3b (ENSKMAG00000003368)	ENSKMAG00000003388	mbd3b (ENSKMAG00000003439)	unc13a (ENSKMAG00000003541)	hmg20b (ENSKMAG00000003630)	ENSKMAG00000003647 #25	rxfp3.2b (ENSKMAG00000003712)	creb3l3a (ENSKMAG00000003719) #21	celf5a (ENSKMAG00000003744)	rgmd (ENSKMAG00000003809)	hsd11b1la (ENSKMAG00000003827)	hsd11b1la (ENSKMAG00000003841)	micos13 (ENSKMAG00000003874)	ENSKMAG00000003857
Turquoise killifish	MODERN SPECIES	1626	slc35a3a (ENSNFUG00015019100)	ENSNFUG00015019108	FAM78B (ENSNFUG00015019110)	ENSNFUG00015019112	C22H19ORF60 (ENSNFUG00015019118)	crlf1b (ENSNFUG00015019127)	TMEM59L (ENSNFUG00015019145)	ENSNFUG00015019152	ssbp4 (ENSNFUG00015019157)	FKBP8 (ENSNFUG00015019178)	ELL (ENSNFUG00015019193)	ATP8B3 (ENSNFUG00015019212)	ONECUT3 (ENSNFUG00015019230)	foxq2 (ENSNFUG00015019237)	PIAS4A (ENSNFUG00015019242) #24	map2k2a (ENSNFUG00015019263) #22	ENSNFUG00015019585	tcf3b (ENSNFUG00015019599)	Nfu_g_1_016071 (ENSNFUG00015019731)	ENSNFUG00015019742	mbd3b (ENSNFUG00015019783)	ENSNFUG00015020116	HMG20B (ENSNFUG00015023480)	EEF2 (ENSNFUG00015023495) #25	celf5a (ENSNFUG00015023550)	rgmd (ENSNFUG00015023556)	HSD11B1L (ENSNFUG00015023562)	C22H19ORF70 (ENSNFUG00015023564)	SPINB (ENSNFUG00015023568)	ENSNFUG00015023573	ENSNFUG00015023576
Cyprinodontoidei	ANCESTRAL SPECIES	10	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT01030000236343	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00970000193487	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000161905.a	ENSGT00940000161213	ENSGT00940000154662.c #25	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a #21	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487.h	ENSGT00940000162487.g	ENSGT00390000002629
Poeciliinae	ANCESTRAL SPECIES	7	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT01030000236343	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00970000193487	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161905.a	ENSGT00940000161213	ENSGT00940000154662.c #25	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a #21	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487.h	ENSGT00940000162487.g
Poecilia	ANCESTRAL SPECIES	1	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT01030000236343	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00970000193487	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c #25	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a #21	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487.h	ENSGT00940000162487.g	ENSGT00390000002629
NAME_6	ANCESTRAL SPECIES	97										ENSGT00940000157484	ENSGT00940000160540	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00970000193487	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c #25	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a #21	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487.h	ENSGT00940000162487.g	ENSGT00390000002629
Amazon molly	MODERN SPECIES	487										lingo3a (ENSPFOG00000020083)	ENSPFOG00000020084	ENSPFOG00000000787	ONECUT3 (ENSPFOG00000001415)	foxq2 (ENSPFOG00000001440)	pias4a (ENSPFOG00000001507) #24	map2k2a (ENSPFOG00000001671) #22	ENSPFOG00000001889	tcf3b (ENSPFOG00000001904)	ENSPFOG00000001910	mbd3b (ENSPFOG00000001993)	ENSPFOG00000002262	hmg20b (ENSPFOG00000003017)	ENSPFOG00000003083 #25	rxfp3.2b (ENSPFOG00000020085)	creb3l3a (ENSPFOG00000003238) #21	celf5a (ENSPFOG00000003329)	rgmd (ENSPFOG00000003463)	hsd11b1la (ENSPFOG00000003482)	hsd11b1la (ENSPFOG00000022752)	hsd11b1la (ENSPFOG00000003516)	micos13 (ENSPFOG00000003587)
Sailfin molly	MODERN SPECIES	52										ENSPLAG00000010209	ENSPLAG00000010180	ENSPLAG00000010172	ONECUT3 (ENSPLAG00000010117)	foxq2 (ENSPLAG00000010072)	pias4a (ENSPLAG00000010061) #24	map2k2a (ENSPLAG00000010038) #22	ENSPLAG00000010005	tcf3b (ENSPLAG00000009999)	ENSPLAG00000009907	ENSPLAG00000009897	ENSPLAG00000009874	ENSPLAG00000009845	hmg20b (ENSPLAG00000000702)	ENSPLAG00000009753 #25	rxfp3.2b (ENSPLAG00000009691)	creb3l3a (ENSPLAG00000009679) #21	ENSPLAG00000009650
Guppy	MODERN SPECIES	456	ssbp4 (ENSPREG00000009177)	fkbp8 (ENSPREG00000009088)	ell (ENSPREG00000009061)	DOT1L (ENSPREG00000008971)	amh (ENSPREG00000008895)	oaz1a (ENSPREG00000008867)	ENSPREG00000008855	org (ENSPREG00000008841)	lingo3a (ENSPREG00000008825)	nfil3-4 (ENSPREG00000008822)	ENSPREG00000008799	ENSPREG00000008766	ONECUT3 (ENSPREG00000008755)	foxq2 (ENSPREG00000008748)	pias4a (ENSPREG00000008712) #24	map2k2a (ENSPREG00000008664) #22	ENSPREG00000008649	tcf3b (ENSPREG00000008581)	UQCR11 (ENSPREG00000008563)	ENSPREG00000008542	mbd3b (ENSPREG00000008488)	unc13a (ENSPREG00000008408)	hmg20b (ENSPREG00000008390)	ENSPREG00000008298 #25	rxfp3.2b (ENSPREG00000008268)	creb3l3a (ENSPREG00000008253) #21	celf5a (ENSPREG00000008235)	rgmd (ENSPREG00000008220)	ENSPREG00000008205	hsd11b1la (ENSPREG00000008194)	hsd11b1la (ENSPREG00000008181)
Platyfish	MODERN SPECIES	23	ssbp4 (ENSXMAG00000021860)	fkbp8 (ENSXMAG00000012879)	ell (ENSXMAG00000012869)	DOT1L (ENSXMAG00000012854)	amh (ENSXMAG00000012844)	oaz1a (ENSXMAG00000012841)	ENSXMAG00000020927	org (ENSXMAG00000030019)	lingo3a (ENSXMAG00000019590)	nfil3-4 (ENSXMAG00000019944)	ENSXMAG00000022500	ENSXMAG00000012771	ONECUT3 (ENSXMAG00000012769)	foxq2 (ENSXMAG00000021529)	pias4a (ENSXMAG00000021264) #24	map2k2a (ENSXMAG00000021375) #22	ENSXMAG00000012740	tcf3b (ENSXMAG00000012718)	UQCR11 (ENSXMAG00000026408)	ENSXMAG00000012716	ENSXMAG00000021430	ENSXMAG00000029443	unc13a (ENSXMAG00000012664)	hmg20b (ENSXMAG00000012647)	ENSXMAG00000012630 #25	rxfp3.2b (ENSXMAG00000012627)	creb3l3a (ENSXMAG00000012615) #21	celf5a (ENSXMAG00000026192)	rgmd (ENSXMAG00000012585)	hsd11b1la (ENSXMAG00000012575)	hsd11b1la (ENSXMAG00000024190)
NAME_4	ANCESTRAL SPECIES	17	ENSGT00390000008279.b	ENSGT00950000183049.C.a.a	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000161905.a	ENSGT00940000161213	ENSGT00940000154662.c #25	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a #21	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487.h	ENSGT00940000162487.g	ENSGT00390000002629	ENSGT00950000182925.C.a.b
Sheepshead minnow	MODERN SPECIES	373	tmem59l (ENSCVAG00000016909)	ssbp4 (ENSCVAG00000016987)	fkbp8 (ENSCVAG00000017001)	ell (ENSCVAG00000017084)	DOT1L (ENSCVAG00000017122)	amh (ENSCVAG00000017392)	oaz1a (ENSCVAG00000017453)	ENSCVAG00000017460	org (ENSCVAG00000017464)	lingo3a (ENSCVAG00000017476)	nfil3-4 (ENSCVAG00000017490)	ENSCVAG00000017513	ONECUT3 (ENSCVAG00000017518)	foxq2 (ENSCVAG00000017544)	pias4a (ENSCVAG00000017561) #24	map2k2a (ENSCVAG00000017585) #22	ENSCVAG00000017592
Mummichog	MODERN SPECIES	2455													ONECUT3 (ENSFHEG00000012254)	foxq2 (ENSFHEG00000012274)	pias4a (ENSFHEG00000012325) #24	map2k2a (ENSFHEG00000000276) #22	ENSFHEG00000012353	tcf3b (ENSFHEG00000012518)	ENSFHEG00000012553	mbd3b (ENSFHEG00000012565)	unc13a (ENSFHEG00000012669)	hmg20b (ENSFHEG00000012684)	ENSFHEG00000012721 #25	rxfp3.2b (ENSFHEG00000012734)	creb3l3a (ENSFHEG00000012771) #21	celf5a (ENSFHEG00000012816)	rgmd (ENSFHEG00000012836)	hsd11b1la (ENSFHEG00000012843)	hsd11b1la (ENSFHEG00000012868)	micos13 (ENSFHEG00000012877)	ENSFHEG00000012882
Ovalentaria_B	ANCESTRAL SPECIES	8	ENSGT00950000183049.C.a.a	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00970000193487	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000161905.a	ENSGT00940000166909	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c #25	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a #21	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a
Pomacentridae	ANCESTRAL SPECIES	14	ENSGT00390000008279.b	ENSGT00950000183049.C.a.a	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00970000193487	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c #25	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a #21	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629	ENSGT00950000182925.C.a.b
Pomacentridae_A	ANCESTRAL SPECIES		ENSGT00390000008279.b	ENSGT00950000183049.C.a.a	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00970000193487	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c #25	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a #21	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629.z	ENSGT00950000182925.C.a.b
Amphiprion	ANCESTRAL SPECIES	2	ENSGT00390000008279.b	ENSGT00950000183049.C.a.a	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00970000193487	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c #25	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a #21	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629.z	ENSGT00950000182925.C.a.b.c
Clown anemonefish	MODERN SPECIES	117														foxq2 (ENSAOCG00000010063)	pias4a (ENSAOCG00000010044) #24	map2k2a (ENSAOCG00000009993) #22	ENSAOCG00000009965	tcf3b (ENSAOCG00000009939)	ENSAOCG00000009851	ENSAOCG00000009832	ENSAOCG00000009812	ADAMTS14 (ENSAOCG00000009741)	pald1a (ENSAOCG00000002629)	ndr2 (ENSAOCG00000009389)	lrrc20 (ENSAOCG00000009373)	ppa1a (ENSAOCG00000009351)	ENSAOCG00000002627	SPOCK2 (ENSAOCG00000009062)	ascc1 (ENSAOCG00000009038)	anapc16 (ENSAOCG00000009025)	ddit4 (ENSAOCG00000009009)
Orange clownfish	MODERN SPECIES	11	tmem59l (ENSAPEG00000006491)	ssbp4 (ENSAPEG00000006563)	fkbp8 (ENSAPEG00000006577)	ell (ENSAPEG00000006602)	DOT1L (ENSAPEG00000006653)	amh (ENSAPEG00000006669)	oaz1a (ENSAPEG00000006728)	ENSAPEG00000006750	org (ENSAPEG00000006781)	lingo3a (ENSAPEG00000006790)	nfil3-4 (ENSAPEG00000006796)	ENSAPEG00000006835	ONECUT3 (ENSAPEG00000006901)	foxq2 (ENSAPEG00000006924)	pias4a (ENSAPEG00000006954) #24	map2k2a (ENSAPEG00000006964) #22	ENSAPEG00000007009	tcf3b (ENSAPEG00000007026)	ENSAPEG00000007122	ENSAPEG00000007136	mbd3b (ENSAPEG00000007189)	ENSAPEG00000007320	hmg20b (ENSAPEG00000007422)	ENSAPEG00000007459 #25	rxfp3.2b (ENSAPEG00000007584)	creb3l3a (ENSAPEG00000007603) #21	celf5a (ENSAPEG00000007649)	rgmd (ENSAPEG00000007684)	hsd11b1la (ENSAPEG00000007702)	micos13 (ENSAPEG00000007730)	ENSAPEG00000007747
Spiny chromis	MODERN SPECIES	7										lingo3a (ENSAPOG00000000130)	nfil3-4 (ENSAPOG00000005508)	ENSAPOG00000005485	ONECUT3 (ENSAPOG00000005380)	foxq2 (ENSAPOG00000005362)	pias4a (ENSAPOG00000005333) #24	map2k2a (ENSAPOG00000005281) #22	ENSAPOG00000005240	tcf3b (ENSAPOG00000005217)	ENSAPOG00000005082	ENSAPOG00000005056	ENSAPOG00000004999	ENSAPOG00000004888	hmg20b (ENSAPOG00000004588)	ENSAPOG00000004529 #25	rxfp3.2b (ENSAPOG00000000932)	creb3l3a (ENSAPOG00000004457) #21	celf5a (ENSAPOG00000004445)	rgmd (ENSAPOG00000000107)	hsd11b1la (ENSAPOG00000004387)	micos13 (ENSAPOG00000004377)	ENSAPOG00000004360
Bicolor damselfish	MODERN SPECIES	335	tmem59l (ENSSPAG00000016543)	ssbp4 (ENSSPAG00000016457)	fkbp8 (ENSSPAG00000016420)	ell (ENSSPAG00000016395)	DOT1L (ENSSPAG00000016344)	amh (ENSSPAG00000016324)	oaz1a (ENSSPAG00000016278)	ENSSPAG00000016262	org (ENSSPAG00000016251)	lingo3a (ENSSPAG00000016247)	nfil3-4 (ENSSPAG00000016243)	ENSSPAG00000016013	ENSSPAG00000015973	foxq2 (ENSSPAG00000015959)	pias4a (ENSSPAG00000015929) #24	map2k2a (ENSSPAG00000015879) #22	ENSSPAG00000015863	tcf3b (ENSSPAG00000015836)	ENSSPAG00000015799	ENSSPAG00000015752	ENSSPAG00000015723
Cichlidae	ANCESTRAL SPECIES	17	ENSGT00950000183049.C.a.a	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00970000193487	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000161905.a	ENSGT00940000166909	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c #25	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a #21	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a	ENSGT00940000177291
Pseudocrenilabrinae	ANCESTRAL SPECIES	10	ENSGT00390000008279.b	ENSGT00950000183049.C.a.a	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00970000193487	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000161905.a	ENSGT00940000166909	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c #25	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a #21	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	16	ENSGT00950000183049.C.a.a	ENSGT00950000183049.C.b.b	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00970000193487	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000161905.a	ENSGT00940000166909	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c #25	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a #21	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a
Haplochromini	ANCESTRAL SPECIES	16	ENSGT00950000183049.C.b.b	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000160540.r	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00970000193487	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c #25	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a #21	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487.d	ENSGT00940000162487.c
Burton s mouthbrooder	MODERN SPECIES	414	ssbp4 (ENSHBUG00000005245)	ENSHBUG00000005257	fkbp8 (ENSHBUG00000005368)	ell (ENSHBUG00000005404)	DOT1L (ENSHBUG00000005459)	amh (ENSHBUG00000005741)	oaz1a (ENSHBUG00000005775)	ENSHBUG00000005785	org (ENSHBUG00000005831)	lingo3a (ENSHBUG00000005836)	ENSHBUG00000005843	ENSHBUG00000005864	ONECUT3 (ENSHBUG00000005882)	foxq2 (ENSHBUG00000005900)	pias4a (ENSHBUG00000005916) #24	map2k2a (ENSHBUG00000005943) #22	ENSHBUG00000005975	tcf3b (ENSHBUG00000006086)	ENSHBUG00000006113	ENSHBUG00000006135	mbd3b (ENSHBUG00000006202)	ENSHBUG00000006283	hmg20b (ENSHBUG00000006326)	ENSHBUG00000006381 #25	rxfp3.2b (ENSHBUG00000006403)	creb3l3a (ENSHBUG00000006417) #21	celf5a (ENSHBUG00000006465)	ENSHBUG00000006483	rgmd (ENSHBUG00000006497)	hsd11b1la (ENSHBUG00000006510)	hsd11b1la (ENSHBUG00000006516)
Haplochromini_A	ANCESTRAL SPECIES	15	ENSGT00950000183049.C.a.a	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000160540.r	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00970000193487	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c #25	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a #21	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a	ENSGT00940000177291	ENSGT00940000162487.d	ENSGT00940000162487.c
P. nyererei	MODERN SPECIES	318	tmem59l (ENSPNYG00000016334)	ssbp4 (ENSPNYG00000016361)	fkbp8 (ENSPNYG00000016388)	ell (ENSPNYG00000016397)	DOT1L (ENSPNYG00000016428)	amh (ENSPNYG00000016478)	oaz1a (ENSPNYG00000016687)	ENSPNYG00000016713	org (ENSPNYG00000016726)	lingo3a (ENSPNYG00000016742)	ENSPNYG00000016748	ENSPNYG00000016775	ONECUT3 (ENSPNYG00000016953)	foxq2 (ENSPNYG00000016965)	pias4a (ENSPNYG00000016983) #24	map2k2a (ENSPNYG00000017002) #22	ENSPNYG00000017042	tcf3b (ENSPNYG00000017087)	ENSPNYG00000017184	ENSPNYG00000017202	mbd3b (ENSPNYG00000017231)	ENSPNYG00000017302	hmg20b (ENSPNYG00000017379)	ENSPNYG00000017403 #25	ENSPNYG00000017458	rxfp3.2b (ENSPNYG00000017467)	creb3l3a (ENSPNYG00000017473) #21	celf5a (ENSPNYG00000017486)	rgmd (ENSPNYG00000017517)	hsd11b1la (ENSPNYG00000017533)	hsd11b1la (ENSPNYG00000017539)
Haplochromini_B	ANCESTRAL SPECIES	10	ENSGT00950000183049.C.a.a	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000160540.r	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00970000193487	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c #25	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a #21	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a	ENSGT00940000177291	ENSGT00940000162487.d	ENSGT00940000162487.c
Eastern happy	MODERN SPECIES	14	ell (ENSACLG00000022818)	ENSACLG00000022841	DOT1L (ENSACLG00000022850)	ENSACLG00000022926	amh (ENSACLG00000022957)	oaz1a (ENSACLG00000022979)	ENSACLG00000023004	org (ENSACLG00000023013)	lingo3a (ENSACLG00000023021)	ENSACLG00000023025	ENSACLG00000023029	ENSACLG00000023041	ONECUT3 (ENSACLG00000023114)	foxq2 (ENSACLG00000023125)	pias4a (ENSACLG00000023132) #24	map2k2a (ENSACLG00000023158) #22	ENSACLG00000023202	ENSACLG00000023207	tcf3b (ENSACLG00000023293)	ENSACLG00000023377	ENSACLG00000023390	mbd3b (ENSACLG00000023424)	ENSACLG00000023469	hmg20b (ENSACLG00000023559)	ENSACLG00000023595 #25	rxfp3.2b (ENSACLG00000023659)	creb3l3a (ENSACLG00000023666) #21	celf5a (ENSACLG00000023709)	rgmd (ENSACLG00000023733)	ENSACLG00000023746	hsd11b1la (ENSACLG00000023762)
Zebra mbuna	MODERN SPECIES	1105	ssbp4 (ENSMZEG00005006255)	fkbp8 (ENSMZEG00005006277)	ell (ENSMZEG00005006297)	DOT1L (ENSMZEG00005006342)	amh (ENSMZEG00005006452)	oaz1a (ENSMZEG00005006485)	ENSMZEG00005006499	org (ENSMZEG00005006509)	lingo3a (ENSMZEG00005006520)	ENSMZEG00005006529	ENSMZEG00005006536	ENSMZEG00005006546	ONECUT3 (ENSMZEG00005006683)	foxq2 (ENSMZEG00005006698)	pias4a (ENSMZEG00005006709) #24	map2k2a (ENSMZEG00005006735) #22	ENSMZEG00005006774	tcf3b (ENSMZEG00005006785)	ENSMZEG00005006851	ENSMZEG00005006883	mbd3b (ENSMZEG00005006928)	unc13a (ENSMZEG00005007011)	hmg20b (ENSMZEG00005007077)	ENSMZEG00005007103 #25	rxfp3.2b (ENSMZEG00005007174)	creb3l3a (ENSMZEG00005007188) #21	celf5a (ENSMZEG00005007211)	rgmd (ENSMZEG00005007252)	ENSMZEG00005007268	hsd11b1la (ENSMZEG00005007291)	hsd11b1la (ENSMZEG00005007301)
Lyretail cichlid	MODERN SPECIES	307	ssbp4 (ENSNBRG00000010536)	ENSNBRG00000010559	fkbp8 (ENSNBRG00000010580)	ell (ENSNBRG00000010592)	DOT1L (ENSNBRG00000010613)	ENSNBRG00000010673	oaz1a (ENSNBRG00000010696)	ENSNBRG00000010717	org (ENSNBRG00000010726)	ENSNBRG00000010747	ENSNBRG00000010781	ENSNBRG00000010791	ONECUT3 (ENSNBRG00000010842)	foxq2 (ENSNBRG00000010887)	pias4a (ENSNBRG00000010912) #24	map2k2a (ENSNBRG00000010940) #22	ENSNBRG00000010965	tcf3b (ENSNBRG00000010986)	ENSNBRG00000011046	ENSNBRG00000011072	mbd3b (ENSNBRG00000011105)	ENSNBRG00000011180	ENSNBRG00000011229	hmg20b (ENSNBRG00000011281)	ENSNBRG00000011329 #25	ENSNBRG00000011384	creb3l3a (ENSNBRG00000011400) #21	celf5a (ENSNBRG00000011418)	rgmd (ENSNBRG00000011449)	hsd11b1la (ENSNBRG00000011473)	hsd11b1la (ENSNBRG00000011488)
Nile tilapia	MODERN SPECIES	14	tmem59l (ENSONIG00000039001)	ssbp4 (ENSONIG00000004761)	fkbp8 (ENSONIG00000004766)	ell (ENSONIG00000004771)	amh (ENSONIG00000004781)	DOT1L (ENSONIG00000004774)	ENSONIG00000004783	org (ENSONIG00000004784)	lingo3a (ENSONIG00000021358)	ENSONIG00000021359	ENSONIG00000039980	ENSONIG00000004785	ONECUT3 (ENSONIG00000004792)	foxq2 (ENSONIG00000004794)	pias4a (ENSONIG00000004799) #24	map2k2a (ENSONIG00000004812) #22	ENSONIG00000004814	tcf3b (ENSONIG00000004816)	ENSONIG00000031773	ENSONIG00000038561	mbd3b (ENSONIG00000004825)	unc13a (ENSONIG00000004832)	hmg20b (ENSONIG00000004838)	ENSONIG00000004840 #25	rxfp3.2b (ENSONIG00000021360)	creb3l3a (ENSONIG00000004846) #21	celf5a (ENSONIG00000004856)	rgmd (ENSONIG00000004867)	ENSONIG00000027594	hsd11b1la (ENSONIG00000004868)	hsd11b1la (ENSONIG00000004870)
Midas cichlid	MODERN SPECIES	551	tmem59l (ENSACIG00000014082)	ssbp4 (ENSACIG00000014107)	fkbp8 (ENSACIG00000014150)	ell (ENSACIG00000014191)	DOT1L (ENSACIG00000014278)	amh (ENSACIG00000014349)	oaz1a (ENSACIG00000014543)	ENSACIG00000014555	org (ENSACIG00000014565)	lingo3a (ENSACIG00000014576)	nfil3-4 (ENSACIG00000014578)	ENSACIG00000014591	ONECUT3 (ENSACIG00000014671)	foxq2 (ENSACIG00000014682)	pias4a (ENSACIG00000014704) #24	map2k2a (ENSACIG00000014846) #22	ENSACIG00000014863	tcf3b (ENSACIG00000014872)	ENSACIG00000014920	ENSACIG00000014984	ENSACIG00000015104	ENSACIG00000015136	hmg20b (ENSACIG00000015213)	ENSACIG00000015246 #25	rxfp3.2b (ENSACIG00000015291)	creb3l3a (ENSACIG00000015303) #21	celf5a (ENSACIG00000015357)	rgmd (ENSACIG00000015383)	ENSACIG00000015404	hsd11b1la (ENSACIG00000015417)	hsd11b1la (ENSACIG00000015431)
Percomorphaceae_C	ANCESTRAL SPECIES	8	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT00990000206265	ENSGT00940000179866	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00970000193487	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c #25	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a #21	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629
Percomorphaceae_D	ANCESTRAL SPECIES	8	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT00990000206265	ENSGT00940000179866	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00970000193487	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c #25	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a #21	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629
Anabantaria	ANCESTRAL SPECIES	7	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT00940000159808.g	ENSGT00990000206265	ENSGT00940000159808.h	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00970000193487	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c #25	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a #21	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629
Zig-zag eel	MODERN SPECIES	18	crlf1b (ENSMAMG00000019897)	tmem59l (ENSMAMG00000019855)	ssbp4 (ENSMAMG00000019813)	fkbp8 (ENSMAMG00000019806)	ell (ENSMAMG00000019802)	DOT1L (ENSMAMG00000019781)	amh (ENSMAMG00000019772)	oaz1a (ENSMAMG00000019754)	org (ENSMAMG00000019749)	lingo3a (ENSMAMG00000019745)	ENSMAMG00000019742	ENSMAMG00000019708	ENSMAMG00000019702	foxq2 (ENSMAMG00000019697)	pias4a (ENSMAMG00000019688) #24	map2k2a (ENSMAMG00000019669) #22	ENSMAMG00000019663	tcf3b (ENSMAMG00000019629)	ENSMAMG00000019605	ENSMAMG00000019593	mbd3b (ENSMAMG00000019580)	ENSMAMG00000019532	hmg20b (ENSMAMG00000019523)	ENSMAMG00000019483 #25	ENSMAMG00000019478	ENSMAMG00000019472 #21	celf5a (ENSMAMG00000019440)	rgmd (ENSMAMG00000019430)	hsd11b1la (ENSMAMG00000019411)	micos13 (ENSMAMG00000019404)	ENSMAMG00000019384
Anabantoidei	ANCESTRAL SPECIES	6	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT00940000159808.g	ENSGT00990000206265	ENSGT00940000159808.h	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00970000193487	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c #25	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a #21	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629
Siamese fighting fish	MODERN SPECIES	15	tmem59l (ENSBSLG00000020107)	ssbp4 (ENSBSLG00000020131)	fkbp8 (ENSBSLG00000020358)	ell (ENSBSLG00000020371)	DOT1L (ENSBSLG00000020487)	amh (ENSBSLG00000020545)	oaz1a (ENSBSLG00000000482)	org (ENSBSLG00000000508)	lingo3a (ENSBSLG00000000528)	nfil3-4 (ENSBSLG00000000543)	ENSBSLG00000000554	ENSBSLG00000000564	ONECUT3 (ENSBSLG00000000585)	foxq2 (ENSBSLG00000000594)	pias4a (ENSBSLG00000000614) #24	map2k2a (ENSBSLG00000000681) #22	ENSBSLG00000000752	tcf3b (ENSBSLG00000000772)	ENSBSLG00000000795	mbd3b (ENSBSLG00000000820)	ENSBSLG00000000972	hmg20b (ENSBSLG00000001058)	ENSBSLG00000001069 #25	rxfp3.2b (ENSBSLG00000001074)	creb3l3a (ENSBSLG00000001077) #21	celf5a (ENSBSLG00000001385)	rgmd (ENSBSLG00000001602)	ENSBSLG00000001604	hsd11b1la (ENSBSLG00000001619)	hsd11b1la (ENSBSLG00000001666)	hsd11b1la (ENSBSLG00000001798)
Climbing perch	MODERN SPECIES	17	fkbp8 (ENSATEG00000001536)	ell (ENSATEG00000001436)	amh (ENSATEG00000025688)	ENSATEG00000000020	ENSATEG00000000602	amh (ENSATEG00000027298)	ENSATEG00000025489	oaz1a (ENSATEG00000029408)	org (ENSATEG00000024225)	lingo3a (ENSATEG00000024223)	ENSATEG00000024219	ENSATEG00000024214	ENSATEG00000024210	foxq2 (ENSATEG00000024209)	pias4a (ENSATEG00000024205) #24	map2k2a (ENSATEG00000024201) #22	ENSATEG00000024198	tcf3b (ENSATEG00000024190)	ENSATEG00000015593	ENSATEG00000024182	mbd3b (ENSATEG00000024170)	unc13a (ENSATEG00000024156)	hmg20b (ENSATEG00000024149)	ENSATEG00000024140 #25	ENSATEG00000024139	ENSATEG00000024136 #21	celf5a (ENSATEG00000024133)	ENSATEG00000024132	rgmd (ENSATEG00000025956)	hsd11b1la (ENSATEG00000024125)	micos13 (ENSATEG00000024121)
Carangaria	ANCESTRAL SPECIES	7	ENSGT00950000183049.C.a.a	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00970000193487	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000161905.a	ENSGT00940000161213	ENSGT00940000154662.c #25	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a #21	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629
Carangaria_A	ANCESTRAL SPECIES	3	ENSGT00950000183049.C.a.a	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00970000193487	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000161905.a	ENSGT00940000161213	ENSGT00940000154662.c #25	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a #21	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629
Seriola	ANCESTRAL SPECIES	21	ENSGT00950000183049.C.a.a	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00970000193487	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000161905.a	ENSGT00940000161213	ENSGT00940000154662.c #25	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a #21	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629
Yellowtail amberjack	MODERN SPECIES	2779	tmem59l (ENSSLDG00000018268)	ssbp4 (ENSSLDG00000018284)	fkbp8 (ENSSLDG00000018302)	ell (ENSSLDG00000018316)	DOT1L (ENSSLDG00000018347)	amh (ENSSLDG00000018418)	oaz1a (ENSSLDG00000018586)	org (ENSSLDG00000018605)	lingo3a (ENSSLDG00000018623)	nfil3-4 (ENSSLDG00000018631)	ENSSLDG00000018644	ENSSLDG00000018664	ONECUT3 (ENSSLDG00000018750)	foxq2 (ENSSLDG00000018770)	pias4a (ENSSLDG00000018787) #24	map2k2a (ENSSLDG00000018873) #22	ENSSLDG00000018915	tcf3b (ENSSLDG00000018938)	ENSSLDG00000018966	ENSSLDG00000018975	mbd3b (ENSSLDG00000019005)	unc13a (ENSSLDG00000019054)
Greater amberjack	MODERN SPECIES	111	ssbp4 (ENSSDUG00000005727)	fkbp8 (ENSSDUG00000005713)	ell (ENSSDUG00000005638)	DOT1L (ENSSDUG00000005561)	amh (ENSSDUG00000005520)	oaz1a (ENSSDUG00000005506)	ENSSDUG00000005495	org (ENSSDUG00000005482)	lingo3a (ENSSDUG00000005473)	nfil3-4 (ENSSDUG00000005467)	ENSSDUG00000005462	ENSSDUG00000005422	ONECUT3 (ENSSDUG00000005407)	foxq2 (ENSSDUG00000005395)	pias4a (ENSSDUG00000005380) #24	map2k2a (ENSSDUG00000005343) #22	ENSSDUG00000005329	tcf3b (ENSSDUG00000005302)	ENSSDUG00000005295	ENSSDUG00000005274	ENSSDUG00000005249	unc13a (ENSSDUG00000005177)	hmg20b (ENSSDUG00000005156)	ENSSDUG00000005084 #25	rxfp3.2b (ENSSDUG00000005071)	creb3l3a (ENSSDUG00000005006) #21	celf5a (ENSSDUG00000004977)	ENSSDUG00000004961	rgmd (ENSSDUG00000004947)	hsd11b1la (ENSSDUG00000004933)	micos13 (ENSSDUG00000004915)
Barramundi perch	MODERN SPECIES	221															pias4a (ENSLCAG00010006281) #24	map2k2a (ENSLCAG00010006202) #22	ENSLCAG00010006176	tcf3b (ENSLCAG00010006151)	ENSLCAG00010006142	ENSLCAG00010006101	mbd3b (ENSLCAG00010004508)	unc13a (ENSLCAG00010003912)	hmg20b (ENSLCAG00010003798)	ENSLCAG00010003297 #25	rxfp3.2b (ENSLCAG00010003191)	celf5a (ENSLCAG00010003144)	ENSLCAG00010003132	rgmd (ENSLCAG00010003131)	hsd11b1la (ENSLCAG00010003124)	micos13 (ENSLCAG00010003121)	ENSLCAG00010003119
Pleuronectoidei	ANCESTRAL SPECIES	29	ENSGT00390000008279.b	ENSGT00950000183049.C.a.a	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00970000193487	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c #25	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a #21	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629
Turbot	MODERN SPECIES	3	crlf1b (ENSSMAG00000010468)	tmem59l (ENSSMAG00000026832)	ssbp4 (ENSSMAG00000010536)	fkbp8 (ENSSMAG00000010583)	ENSSMAG00000010716	ENSSMAG00000010865	oaz1a (ENSSMAG00000036339)	ENSSMAG00000010955	org (ENSSMAG00000010979)	lingo3a (ENSSMAG00000010996)	nfil3-4 (ENSSMAG00000023493)	ENSSMAG00000011008	ENSSMAG00000011032	foxq2 (ENSSMAG00000027229)	pias4a (ENSSMAG00000011051) #24	map2k2a (ENSSMAG00000011095) #22	ENSSMAG00000011133	tcf3b (ENSSMAG00000011141)	ENSSMAG00000011289	ENSSMAG00000011344	mbd3b (ENSSMAG00000011414)	ENSSMAG00000011477	ENSSMAG00000011593 #25	hmg20b (ENSSMAG00000011561)	ENSSMAG00000011623	ENSSMAG00000011634 #21	celf5a (ENSSMAG00000011707)	rgmd (ENSSMAG00000011765)	hsd11b1la (ENSSMAG00000011781)	micos13 (ENSSMAG00000035702)	ENSSMAG00000033349
Tongue sole	MODERN SPECIES	11	rex1bd (ENSCSEG00000005583)	crlf1b (ENSCSEG00000005591)	tmem59l (ENSCSEG00000005608)	ssbp4 (ENSCSEG00000005625)	fkbp8 (ENSCSEG00000005642)	ell (ENSCSEG00000005649)	DOT1L (ENSCSEG00000005666)	amh (ENSCSEG00000005692)	oaz1a (ENSCSEG00000005700)	org (ENSCSEG00000005703)	lingo3a (ENSCSEG00000005708)	ENSCSEG00000005713	nfil3-4 (ENSCSEG00000005727)	ENSCSEG00000005733	pias4a (ENSCSEG00000005736) #24	map2k2a (ENSCSEG00000005743) #22	ENSCSEG00000005752	tcf3b (ENSCSEG00000005762)	ENSCSEG00000005775	ENSCSEG00000005781	yjefn3 (ENSCSEG00000005787)	gatad2ab (ENSCSEG00000005801)	MAU2 (ENSCSEG00000005813)	slc25a42 (ENSCSEG00000005845)	tmem161a (ENSCSEG00000005851)	ENSCSEG00000005870	borcs8 (ENSCSEG00000006744)	ENSCSEG00000006752	rfxank (ENSCSEG00000006758)	nr2c2ap (ENSCSEG00000006765)	NCAN (ENSCSEG00000006782)
Eupercaria	ANCESTRAL SPECIES	8	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT01030000236343	ENSGT00940000179866	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00970000193487	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c #25	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a #21	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629
Tetraodontidae	ANCESTRAL SPECIES	5	ENSGT00390000008279.b	ENSGT00950000183049.C.a.a	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT00940000159808	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00970000193487	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c #25	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a #21	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629
Tetraodon	MODERN SPECIES		FAM78B (ENSTNIG00000006642)	crlf1b (ENSTNIG00000019587)	tmem59l (ENSTNIG00000019440)	ssbp4 (ENSTNIG00000004007)	fkbp8 (ENSTNIG00000005610)	ell (ENSTNIG00000004352)	DOT1L (ENSTNIG00000004351)	ENSTNIG00000000746	oaz1a (ENSTNIG00000005649)	org (ENSTNIG00000005650)	lingo3a (ENSTNIG00000004974)	ENSTNIG00000004975	ENSTNIG00000004976	ENSTNIG00000004331	pias4a (ENSTNIG00000003243) #24	map2k2a (ENSTNIG00000003242) #22	ENSTNIG00000004415	tcf3b (ENSTNIG00000004414)	ENSTNIG00000010626	ENSTNIG00000010627	mbd3b (ENSTNIG00000010628)	ENSTNIG00000010629	hmg20b (ENSTNIG00000010630)	eef2b (ENSTNIG00000010631) #25	RXFP3 (ENSTNIG00000010632)	creb3l3a (ENSTNIG00000010633) #21	celf5a (ENSTNIG00000010634)	rgmd (ENSTNIG00000010635)	hsd11b1la (ENSTNIG00000010636)	micos13 (ENSTNIG00000010637)	ENSTNIG00000010638
Fugu	MODERN SPECIES	12	crlf1b (ENSTRUG00000017809)	tmem59l (ENSTRUG00000017813)	ssbp4 (ENSTRUG00000017822)	fkbp8 (ENSTRUG00000017825)	ell (ENSTRUG00000017827)	DOT1L (ENSTRUG00000017836)	amh (ENSTRUG00000017845)	oaz1 (ENSTRUG00000017848)	org (ENSTRUG00000021694)	lingo3a (ENSTRUG00000029689)	nfil3-4 (ENSTRUG00000024024)	ENSTRUG00000017852	ONECUT3 (ENSTRUG00000017862)	foxq2 (ENSTRUG00000019696)	pias4 (ENSTRUG00000017867) #24	map2k2a (ENSTRUG00000017876) #22	ENSTRUG00000017896	tcf3b (ENSTRUG00000017901)	ENSTRUG00000024626	ENSTRUG00000019805	hmg20b (ENSTRUG00000023188)	eef2b (ENSTRUG00000017921) #25	rxfp3.2b (ENSTRUG00000017932)	creb3l3a (ENSTRUG00000017933) #21	ENSTRUG00000024401	celf5a (ENSTRUG00000017937)	ENSTRUG00000028383	rgmd (ENSTRUG00000017971)	hsd11b1la (ENSTRUG00000017980)	micos13 (ENSTRUG00000024935)	ENSTRUG00000030441
Eupecaria_A	ANCESTRAL SPECIES	11	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT01030000236343	ENSGT00940000179866	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00970000193487	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c #25	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a #21	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629
Ballan wrasse	MODERN SPECIES	45	fkbp8 (ENSLBEG00000018640)	ell (ENSLBEG00000018604)	ENSLBEG00000018587	DOT1L (ENSLBEG00000018459)	amh (ENSLBEG00000018391)	oaz1a (ENSLBEG00000018367)	ENSLBEG00000018346	org (ENSLBEG00000018328)	lingo3a (ENSLBEG00000018319)	nfil3-4 (ENSLBEG00000018305)	ENSLBEG00000018297	ENSLBEG00000018270	ONECUT3 (ENSLBEG00000018257)	foxq2 (ENSLBEG00000018243)	pias4a (ENSLBEG00000018229) #24	map2k2a (ENSLBEG00000018179) #22	ENSLBEG00000018148	tcf3b (ENSLBEG00000018121)	ENSLBEG00000018105	ENSLBEG00000018071	ENSLBEG00000018021	ENSLBEG00000017985	unc13a (ENSLBEG00000017253)	hmg20b (ENSLBEG00000016997)	ENSLBEG00000016853 #25	rxfp3.2b (ENSLBEG00000016833)	creb3l3a (ENSLBEG00000016806) #21	celf5a (ENSLBEG00000016733)	ENSLBEG00000016696	rgmd (ENSLBEG00000016677)	hsd11b1la (ENSLBEG00000016655)
Eupecaria_B	ANCESTRAL SPECIES	10	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT01030000236343	ENSGT00940000179866	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00970000193487	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c #25	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a #21	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629
Eupecaria_C	ANCESTRAL SPECIES	4	ENSGT00390000008279.b	ENSGT00950000183049.C.a.a	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT00940000159808	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00970000193487	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c #25	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a #21	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	3	ENSGT00390000008279.b	ENSGT00950000183049.C.a.a	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT00940000159808	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00970000193487	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c #25	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a #21	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a	ENSGT00940000177291	ENSGT00940000162487	ENSGT00390000002629
Large yellow croaker	MODERN SPECIES	489	tmem59l (ENSLCRG00005003673)	ssbp4 (ENSLCRG00005000927)	fkbp8 (ENSLCRG00005000803)	ell (ENSLCRG00005020613)	DOT1L (ENSLCRG00005020600)	amh (ENSLCRG00005020594)	oaz1a (ENSLCRG00005020593)	org (ENSLCRG00005020591)	lingo3a (ENSLCRG00005020590)	nfil3-4 (ENSLCRG00005020589)	ENSLCRG00005020588	ENSLCRG00005020585	ONECUT3 (ENSLCRG00005020583)	foxq2 (ENSLCRG00005020582)	pias4a (ENSLCRG00005020574) #24	map2k2a (ENSLCRG00005020546) #22	ENSLCRG00005020543	tcf3b (ENSLCRG00005020537)	ENSLCRG00005020535	ENSLCRG00005020531	mbd3b (ENSLCRG00005019959)	unc13a (ENSLCRG00005014451)	hmg20b (ENSLCRG00005014394)	hmg20b (ENSLCRG00005014392)	ENSLCRG00005014391 #25	ENSLCRG00005014318 #25	rxfp3.2b (ENSLCRG00005014316)	creb3l3a (ENSLCRG00005014315) #21	celf5a (ENSLCRG00005013906)	rgmd (ENSLCRG00005013898)	hsd11b1la (ENSLCRG00005013897)
European seabass	MODERN SPECIES	17	tmem59l (ENSDLAG00005018947)	ssbp4 (ENSDLAG00005028129)	fkbp8 (ENSDLAG00005006935)	ell (ENSDLAG00005006945)	ENSDLAG00005007009	ENSDLAG00005007127	oaz1a (ENSDLAG00005007152)	org (ENSDLAG00005032582)	lingo3a (ENSDLAG00005029798)	nfil3-4 (ENSDLAG00005034126)	ENSDLAG00005032586	ENSDLAG00005007203	ENSDLAG00005007246	foxq2 (ENSDLAG00005007454)	pias4a (ENSDLAG00005007467) #24	map2k2a (ENSDLAG00005007532) #22	ENSDLAG00005027950	tcf3b (ENSDLAG00005007641)	ENSDLAG00005007902	mbd3b (ENSDLAG00005008038)	ENSDLAG00005010545	hmg20b (ENSDLAG00005012176)	ENSDLAG00005007255 #25	ENSDLAG00005012187	ENSDLAG00005012189 #21	celf5a (ENSDLAG00005012223)	rgmd (ENSDLAG00005034969)	ENSDLAG00005013250	hsd11b1la (ENSDLAG00005033494)	micos13 (ENSDLAG00005030603)	ENSDLAG00005013319
Gilthead seabream	MODERN SPECIES	2	tmem59l (ENSSAUG00010017182)	ssbp4 (ENSSAUG00010017171)	fkbp8 (ENSSAUG00010017158)	ell (ENSSAUG00010016910)	DOT1L (ENSSAUG00010016896)	amh (ENSSAUG00010016872)	oaz1a (ENSSAUG00010016869)	org (ENSSAUG00010016866)	lingo3a (ENSSAUG00010016865)	ENSSAUG00010016864	ENSSAUG00010016863	ENSSAUG00010016859	ONECUT3 (ENSSAUG00010016857)	foxq2 (ENSSAUG00010016856)	pias4a (ENSSAUG00010016853) #24	map2k2a (ENSSAUG00010016794) #22	ENSSAUG00010016791	tcf3b (ENSSAUG00010016777)	UQCR11-A (ENSSAUG00010016776)	ENSSAUG00010016761	mbd3b (ENSSAUG00010014453)	ENSSAUG00010006800	hmg20b (ENSSAUG00010006681)	ENSSAUG00010006609 #25	rxfp3.2b (ENSSAUG00010006596)	creb3l3a (ENSSAUG00010006590) #21	celf5a (ENSSAUG00010006236)	ENSSAUG00010006223	rgmd (ENSSAUG00010006219)	hsd11b1la (ENSSAUG00010006216)	micos13 (ENSSAUG00010006210)
Perciformes	ANCESTRAL SPECIES	8	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT01030000236343	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00970000193487	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c #25	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a #21	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629
Perciformes_a	ANCESTRAL SPECIES	6	ENSGT00950000183049.C.a.a	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00970000193487	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c #25	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a #21	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a	ENSGT00940000162487	ENSGT00390000002629
Channel bull blenny	MODERN SPECIES	18	ssbp4 (ENSCGOG00000009536)	fkbp8 (ENSCGOG00000009474)	ell (ENSCGOG00000009470)	DOT1L (ENSCGOG00000008368)	amh (ENSCGOG00000008344)	oaz1a (ENSCGOG00000008337)	ENSCGOG00000008332	org (ENSCGOG00000008327)	lingo3a (ENSCGOG00000008324)	nfil3-4 (ENSCGOG00000008321)	ENSCGOG00000008319	ENSCGOG00000008285	ONECUT3 (ENSCGOG00000008282)	foxq2 (ENSCGOG00000008279)	pias4a (ENSCGOG00000008268) #24	map2k2a (ENSCGOG00000007606) #22	ENSCGOG00000007572	tcf3b (ENSCGOG00000007482)	ENSCGOG00000007477	ENSCGOG00000007471	mbd3b (ENSCGOG00000007465)	ENSCGOG00000004133	hmg20b (ENSCGOG00000004009)	ENSCGOG00000003282 #25	rxfp3.2b (ENSCGOG00000003232)	creb3l3a (ENSCGOG00000003219) #21	celf5a (ENSCGOG00000003127)	ENSCGOG00000003124	rgmd (ENSCGOG00000003121)	hsd11b1la (ENSCGOG00000003118)	micos13 (ENSCGOG00000003115)
Pike perch	MODERN SPECIES	34	crlf1b (ENSSLUG00000012614)	tmem59l (ENSSLUG00000012619)	ssbp4 (ENSSLUG00000012627)	fkbp8 (ENSSLUG00000012664)	ell (ENSSLUG00000012675)	DOT1L (ENSSLUG00000012762)	amh (ENSSLUG00000012781)	oaz1a (ENSSLUG00000012785)	org (ENSSLUG00000012790)	lingo3a (ENSSLUG00000012793)	ENSSLUG00000012796	ENSSLUG00000012797	ONECUT3 (ENSSLUG00000012802)	foxq2 (ENSSLUG00000012804)	pias4a (ENSSLUG00000012813) #24	map2k2a (ENSSLUG00000012846) #22	ENSSLUG00000013000	tcf3b (ENSSLUG00000013013)	ENSSLUG00000013074	ENSSLUG00000013084	mbd3b (ENSSLUG00000013102)	ENSSLUG00000013172	hmg20b (ENSSLUG00000013466)	ENSSLUG00000013485 #25	rxfp3.2b (ENSSLUG00000013548)	creb3l3a (ENSSLUG00000013552) #21	celf5a (ENSSLUG00000013580)	rgmd (ENSSLUG00000014319)	hsd11b1la (ENSSLUG00000014330)	micos13 (ENSSLUG00000014338)	ENSSLUG00000014341
Cottioidei	ANCESTRAL SPECIES	5	ENSGT00950000183049.C.a.a	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT01030000236343	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00970000193487	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000154662.c #25	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000159261.d.a #21	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.a	ENSGT00940000177291	ENSGT00940000162487	ENSGT00390000002629
Stickleback	MODERN SPECIES	8	ENSGACG00000012506	ssbp4 (ENSGACG00000012509)	fkbp8 (ENSGACG00000012561)	ell (ENSGACG00000012588)	DOT1L (ENSGACG00000012616)	amh (ENSGACG00000012629)	ENSGACG00000012639	oaz1a (ENSGACG00000012643)	ENSGACG00000012649	org (ENSGACG00000012651)	lingo3a (ENSGACG00000012652)	ENSGACG00000012656	ENSGACG00000012658	ONECUT3 (ENSGACG00000012671)	pias4a (ENSGACG00000012681) #24	map2k2a (ENSGACG00000012686) #22	ENSGACG00000012730	tcf3b (ENSGACG00000012737)	ENSGACG00000012755	mbd3b (ENSGACG00000012760)	hmg20b (ENSGACG00000012785)	ENSGACG00000012793 #25	rxfp3.2b (ENSGACG00000012856)	creb3l3a (ENSGACG00000012860) #21	celf5a (ENSGACG00000012870)	rgmd (ENSGACG00000012876)	hsd11b1la (ENSGACG00000012884)	ENSGACG00000012902	ENSGACG00000012927	ENSGACG00000012935	ENSGACG00000012948
Lumpfish	MODERN SPECIES	19	crlf1b (ENSCLMG00005016733)	tmem59l (ENSCLMG00005016760)	ssbp4 (ENSCLMG00005016764)	fkbp8 (ENSCLMG00005016767)	ell (ENSCLMG00005016774)	DOT1L (ENSCLMG00005016800)	amh (ENSCLMG00005016820)	oaz1a (ENSCLMG00005016821)	org (ENSCLMG00005016822)	lingo3a (ENSCLMG00005016825)	ENSCLMG00005016826	ENSCLMG00005016827	ONECUT3 (ENSCLMG00005016830)	foxq2 (ENSCLMG00005016831)	pias4a (ENSCLMG00005016833) #24	map2k2a (ENSCLMG00005016837) #22	ENSCLMG00005016924	tcf3b (ENSCLMG00005016927)	ENSCLMG00005016989	ENSCLMG00005016993	ENSCLMG00005017013	ENSCLMG00005017014	ENSCLMG00005017025	hmg20b (ENSCLMG00005000069)	ENSCLMG00005000167 #25	rxfp3.2b (ENSCLMG00005000364)	creb3l3a (ENSCLMG00005000369) #21	ENSCLMG00005000371	rgmd (ENSCLMG00005000373)	ENSCLMG00005000374	hsd11b1la (ENSCLMG00005000375)
Tiger tail seahorse	MODERN SPECIES	469	tmem59l (ENSHCOG00000001047)	ENSHCOG00000001053	ssbp4 (ENSHCOG00000001058)	fkbp8 (ENSHCOG00000001065)	ell (ENSHCOG00000001070)	DOT1L (ENSHCOG00000001086)	amh (ENSHCOG00000001199)	oaz1a (ENSHCOG00000001278)	org (ENSHCOG00000001285)	lingo3a (ENSHCOG00000001286)	ENSHCOG00000000737	ENSHCOG00000001314	ONECUT3 (ENSHCOG00000001323)	foxq2 (ENSHCOG00000001331)	pias4a (ENSHCOG00000001356) #24	map2k2a (ENSHCOG00000001372) #22	ENSHCOG00000001375	tcf3b (ENSHCOG00000001392)	ENSHCOG00000001404	ENSHCOG00000001410	mbd3b (ENSHCOG00000001424)	ENSHCOG00000001450	hmg20b (ENSHCOG00000001458)	ENSHCOG00000001471 #25	rxfp3.2b (ENSHCOG00000001481)	creb3l3a (ENSHCOG00000001490) #21	celf5a (ENSHCOG00000000056)	ENSHCOG00000001497	ENSHCOG00000001500	rgmd (ENSHCOG00000001504)	hsd11b1la (ENSHCOG00000001515)
Pinecone sodierfish	MODERN SPECIES	18	crlf1b (ENSMMDG00005006789)	tmem59l (ENSMMDG00005006788)	ssbp4 (ENSMMDG00005006752)	fkbp8 (ENSMMDG00005006732)	ell (ENSMMDG00005006702)	DOT1L (ENSMMDG00005005213)	amh (ENSMMDG00005005169)	oaz1a (ENSMMDG00005005165)	org (ENSMMDG00005005160)	lingo3a (ENSMMDG00005005157)	nfil3-4 (ENSMMDG00005005154)	ENSMMDG00005005147	ONECUT3 (ENSMMDG00005005143)	foxq2 (ENSMMDG00005005140)	pias4a (ENSMMDG00005005133) #24	map2k2a (ENSMMDG00005004987) #22	ENSMMDG00005004983	tcf3b (ENSMMDG00005004729)	ENSMMDG00005004684	ENSMMDG00005004563	mbd3b (ENSMMDG00005004502)	ENSMMDG00005004469	ENSMMDG00005004444	hmg20b (ENSMMDG00005004430)	btbd2a (ENSMMDG00005004383)	ENSMMDG00005003776 #25	rxfp3.2b (ENSMMDG00005003742)	creb3l3a (ENSMMDG00005003726) #21	celf5a (ENSMMDG00005003668)	rgmd (ENSMMDG00005003652)	hsd11b1la (ENSMMDG00005003645)
Cod	MODERN SPECIES	3	crlf1b (ENSGMOG00000013268)	tmem59l (ENSGMOG00000005266)	ENSGMOG00000034096	fkbp8 (ENSGMOG00000008694)	ell (ENSGMOG00000008706)	ENSGMOG00000008728	ENSGMOG00000008768	oaz1a (ENSGMOG00000008816)	org (ENSGMOG00000008826)	lingo3a (ENSGMOG00000028112)	ENSGMOG00000034546	ENSGMOG00000029496	ENSGMOG00000008846	ENSGMOG00000008893	pias4a (ENSGMOG00000008897) #24	map2k2a (ENSGMOG00000008913) #22	ENSGMOG00000023336	tcf3b (ENSGMOG00000008934)	ENSGMOG00000036369	ENSGMOG00000008953	mbd3b (ENSGMOG00000008969)	hmg20b (ENSGMOG00000011717)	ENSGMOG00000011722 #25	ENSGMOG00000027279	ENSGMOG00000011735 #21	ENSGMOG00000034420	ENSGMOG00000011747	ENSGMOG00000033465	rgmd (ENSGMOG00000025233)	hsd11b1la (ENSGMOG00000011762)	ENSGMOG00000011769
Protacanthopterygii	ANCESTRAL SPECIES	13	ENSGT00950000183049.C.a.a	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT00940000159808	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752	ENSGT00940000157036.e.a	ENSGT00390000018299	ENSGT00950000183005.b.b	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000159179.h	ENSGT00940000154662.d.l.a #25	ENSGT00940000159261.d.a #21	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00940000154716.hc	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	11	ENSGT00940000156569.a.b.b.f	ENSGT00390000008279.b.c	ENSGT00950000183049.C.a.a.a	ENSGT00940000156705.f	ENSGT00940000155914.c.a.b	ENSGT00390000013515.g	ENSGT00390000006337	ENSGT00940000159808.e	ENSGT00940000159808.f.a	ENSGT00610000087460	ENSGT00390000006809	ENSGT00940000164500.b.c	ENSGT00950000183103.d.b.a.b.a	ENSGT00940000166634.e	ENSGT01030000234539.a.a.a.f.a #24	ENSGT00940000153487.b.a.s.a.c #22	ENSGT00940000166752.e	ENSGT00940000157036.e.a.d	ENSGT00390000018299	ENSGT00950000183005.b.b.c	ENSGT00940000155402.a.a	ENSGT00940000154929.B.g.a	ENSGT00940000161213.c	ENSGT00940000159179.h	ENSGT00940000154662.d.l.a.a #25	ENSGT00940000159261.d.a.d #21	ENSGT01030000234534.B.a.a.a.a.a.a.b	ENSGT00940000154201.a.a.b.d.cb.b.a	ENSGT00950000183112.b.a.a.a.d	ENSGT00940000162487.t.a	ENSGT00390000002629.u
Salmoninae_a	ANCESTRAL SPECIES	22	ENSGT00390000008279.b.c	ENSGT00950000183049.C.a.a.a	ENSGT00940000156705.f	ENSGT00940000155914.c.a.b	ENSGT00390000013515.g	ENSGT00390000006337	ENSGT00940000159808.f.a	ENSGT00610000087460	ENSGT00940000159808.e	ENSGT00390000006809	ENSGT00940000164500.b.c	ENSGT00940000164108.b.a.c	ENSGT00950000183103.d.b.a.b.a	ENSGT00940000166634.e	ENSGT01030000234539.a.a.a.f.a #24	ENSGT00940000153487.b.a.s.a.c #22	ENSGT00940000166752.e	ENSGT00940000157036.e.a.d	ENSGT00390000018299	ENSGT00950000183005.b.b.c	ENSGT00940000155402.a.a	ENSGT00940000154929.B.g.a	ENSGT00940000161213.c	ENSGT00940000159179.h	ENSGT00940000154662.d.l.a.a #25	ENSGT00940000159261.d.a.d #21	ENSGT01030000234534.B.a.a.a.a.a.a.b	ENSGT00940000154201.a.a.b.d.cb.b.a	ENSGT00950000183112.b.a.a.a.d	ENSGT00940000162487.t.a	ENSGT00390000002629.u
Oncorhynchus	ANCESTRAL SPECIES	8	ENSGT01000000219677	ENSGT00940000156569.a.b.b.f	ENSGT00390000008279.b.c	ENSGT00950000183049.C.a.a.a	ENSGT00940000156705.f	ENSGT00940000155914.c.a.b	ENSGT00390000013515.g	ENSGT00390000006337	ENSGT00940000159808.e	ENSGT00390000006809	ENSGT00940000164500.b.c	ENSGT00940000164108.b.a.c	ENSGT00950000183103.d.b.a.b.a	ENSGT00940000166634.e	ENSGT01030000234539.a.a.a.f.a #24	ENSGT00940000153487.b.a.s.a.c #22	ENSGT00940000166752.e	ENSGT00940000157036.e.a.d	ENSGT00390000018299	ENSGT00950000183005.b.b.c	ENSGT00940000155402.a.a	ENSGT00940000154929.B.g.a	ENSGT00940000161213.c	ENSGT00940000159179.h	ENSGT00940000154662.d.l.a.a #25	ENSGT00940000159261.d.a.d #21	ENSGT01030000234534.B.a.a.a.a.a.a.b	ENSGT00940000154201.a.a.b.d.cb.b.a	ENSGT00950000183112.b.a.a.a.d	ENSGT00940000162487.t.a	ENSGT00390000002629.u
Oncorhynchus_a	ANCESTRAL SPECIES	14	ENSGT00940000156569.a.b.b.f	ENSGT00390000008279.b.c	ENSGT00950000183049.C.a.a.a	ENSGT00940000156705.f	ENSGT00940000155914.c.a.b	ENSGT00390000013515.g	ENSGT00390000006337	ENSGT00940000159808.f.a	ENSGT00940000159808.e	ENSGT00390000006809	ENSGT00940000164500.b.c	ENSGT00940000164108.b.a.c	ENSGT00950000183103.d.b.a.a.b	ENSGT00940000166634.e	ENSGT01030000234539.a.a.a.f.a #24	ENSGT00940000153487.b.a.s.a.c #22	ENSGT00940000166752.e	ENSGT00940000157036.e.a.d	ENSGT00390000018299	ENSGT00950000183005.b.b.c	ENSGT00940000155402.a.a	ENSGT00940000154929.B.g.a	ENSGT00940000161213.c	ENSGT00940000159179.h	ENSGT00940000154662.d.l.a.a #25	ENSGT00940000159261.d.a.d #21	ENSGT01030000234534.B.a.a.a.a.a.a.b	ENSGT00940000154201.a.a.b.d.cb.b.a	ENSGT00950000183112.b.a.a.a.d	ENSGT00940000162487.t.a	ENSGT00390000002629.u
Chinook salmon	MODERN SPECIES	29	shdb (ENSOTSG00005041892) #16	ENSOTSG00005041891 #19	ENSOTSG00005041890 #19	ENSOTSG00005041889	shc2 (ENSOTSG00005041888)	cks2 (ENSOTSG00005041887)	ENSOTSG00005041886	ENSOTSG00005041884	ENSOTSG00005041883	crlf1b (ENSOTSG00005041882)	tmem59l (ENSOTSG00005041881)	ENSOTSG00005041880	ENSOTSG00005041878	foxq2 (ENSOTSG00005041877)	pias4a (ENSOTSG00005041876) #24	map2k2a (ENSOTSG00005041842) #22	ENSOTSG00005041839	tcf3b (ENSOTSG00005041813)	UQCR11 (ENSOTSG00005041812)	ENSOTSG00005041801	mbd3b (ENSOTSG00005032354)	ENSOTSG00005028127	hmg20b (ENSOTSG00005028095)	btbd2a (ENSOTSG00005027995)	eef2b (ENSOTSG00005027841) #25	creb3l3a (ENSOTSG00005027839) #21	rxfp3.2b (ENSOTSG00005027837)	ENSOTSG00005027836	celf5a (ENSOTSG00005027834)	rgmd (ENSOTSG00005027833)	hsd11b1la (ENSOTSG00005027832)
Coho salmon	MODERN SPECIES	4	tmem59l (ENSOKIG00005039865)	ENSOKIG00005039907	ssbp4 (ENSOKIG00005039948)	fkbp8 (ENSOKIG00005040657)	ell (ENSOKIG00005040869)	DOT1L (ENSOKIG00005041013)	amh (ENSOKIG00005041367)	ENSOKIG00005041381	oaz1a (ENSOKIG00005041388)	org (ENSOKIG00005041463)	lingo3a (ENSOKIG00005041488)	nfil3-4 (ENSOKIG00005041496)	ONECUT3 (ENSOKIG00005041534)	foxq2 (ENSOKIG00005041552)	pias4a (ENSOKIG00005041570) #24	map2k2a (ENSOKIG00005041689) #22	ENSOKIG00005041909	ENSOKIG00005041921	tcf3b (ENSOKIG00005041972)	UQCR11 (ENSOKIG00005042395)	ENSOKIG00005042430	mbd3b (ENSOKIG00005042554)	eef2b (ENSOKIG00005042682) #25	ENSOKIG00005043088	hmg20b (ENSOKIG00005045048)	btbd2a (ENSOKIG00005045078)	creb3l3a (ENSOKIG00005045180) #21	rxfp3.2b (ENSOKIG00005003851)	celf5a (ENSOKIG00005003859)	ENSOKIG00005003868	rgmd (ENSOKIG00005003870)
Rainbow trout	MODERN SPECIES	26	crlf1b (ENSOMYG00000025390)	tmem59l (ENSOMYG00000025330)	ssbp4 (ENSOMYG00000028010)	fkbp8 (ENSOMYG00000027698)	ell (ENSOMYG00000027667)	ENSOMYG00000027287	amh (ENSOMYG00000027120)	oaz1a (ENSOMYG00000027112)	org (ENSOMYG00000027097)	lingo3a (ENSOMYG00000027063)	nfil3-4 (ENSOMYG00000027055)	ENSOMYG00000027045	foxq2 (ENSOMYG00000027035)	ENSOMYG00000069495	pias4a (ENSOMYG00000026996) #24	map2k2a (ENSOMYG00000026830) #22	ENSOMYG00000026747	tcf3b (ENSOMYG00000026566)	ENSOMYG00000026379	ENSOMYG00000026298	mbd3b (ENSOMYG00000025002)	ENSOMYG00000067858	ENSOMYG00000018017	hmg20b (ENSOMYG00000017483)	btbd2a (ENSOMYG00000017261)	ENSOMYG00000016947 #25	ENSOMYG00000067523	creb3l3a (ENSOMYG00000016901) #21	rxfp3.2b (ENSOMYG00000016896)	celf5a (ENSOMYG00000016886)	ENSOMYG00000014600
Salmo	ANCESTRAL SPECIES	14	ENSGT00940000160988	ENSGT00940000156569.a.b.b.f	ENSGT00390000008279.b.c	ENSGT00950000183049.C.a.a.a	ENSGT00940000156705.f	ENSGT00940000155914.c.a.b	ENSGT00390000013515.g	ENSGT00390000006337	ENSGT00940000159808.e	ENSGT00390000006809	ENSGT00940000164500.b.c	ENSGT00940000164108.b.a.c	ENSGT00950000183103.d.b.a.b.a	ENSGT00940000166634.e	ENSGT01030000234539.a.a.a.f.a #24	ENSGT00940000153487.b.a.s.a.c #22	ENSGT00940000166752.e	ENSGT00940000157036.e.a.d	ENSGT00390000018299	ENSGT00950000183005.b.b.c	ENSGT00940000155402.a.a	ENSGT00940000154929.B.g.a	ENSGT00940000161213.c	ENSGT00940000159179.h	ENSGT00940000154662.d.l.a.a #25	ENSGT00940000159261.d.a.d #21	ENSGT01030000234534.B.a.a.a.a.a.a.b	ENSGT00990000213636	ENSGT00940000154201.a.a.b.d.cb.b.a	ENSGT00950000183112.b.a.a.a.d	ENSGT00940000162487.t.a
River trout	MODERN SPECIES	14	ENSSTUG00000032392	crlf1b (ENSSTUG00000032330)	tmem59l (ENSSTUG00000032268)	ssbp4 (ENSSTUG00000031717)	fkbp8 (ENSSTUG00000031560)	ell (ENSSTUG00000031460)	DOT1L (ENSSTUG00000031330)	ENSSTUG00000031279	oaz1a (ENSSTUG00000031277)	ENSSTUG00000031273	org (ENSSTUG00000031263)	lingo3a (ENSSTUG00000031260)	ONECUT3 (ENSSTUG00000048688)	foxq2 (ENSSTUG00000048684)	pias4a (ENSSTUG00000048663) #24	map2k2a (ENSSTUG00000048587) #22	ENSSTUG00000048578	ENSSTUG00000048574	tcf3b (ENSSTUG00000048478)	UQCR11 (ENSSTUG00000048458)	ENSSTUG00000048402	mbd3b (ENSSTUG00000048309)	ENSSTUG00000045917	hmg20b (ENSSTUG00000045734)	btbd2a (ENSSTUG00000045648)	eef2b (ENSSTUG00000045526) #25	creb3l3a (ENSSTUG00000045505) #21	rxfp3.2b (ENSSTUG00000045500)	ENSSTUG00000045486	celf5a (ENSSTUG00000045372)	rgmd (ENSSTUG00000045354)
Atlantic salmon	MODERN SPECIES	1	sac3d1 (ENSSSAG00000063395)	crlf1b (ENSSSAG00000085552)	tmem59l (ENSSSAG00000094749)	ssbp4 (ENSSSAG00000115956)	fkbp8 (ENSSSAG00000062933)	ell (ENSSSAG00000062878)	dot1l (ENSSSAG00000061712)	amh (ENSSSAG00000061537)	oaz1 (ENSSSAG00000061483)	org (ENSSSAG00000061454)	lingo3a (ENSSSAG00000120773)	nfil3-4 (ENSSSAG00000061418)	ENSSSAG00000061384	foxq2 (ENSSSAG00000061378)	pias4a (ENSSSAG00000060551) #24	map2k2a (ENSSSAG00000102037) #22	ENSSSAG00000105293	tcf3b (ENSSSAG00000060154)	ENSSSAG00000010231	mbd3b (ENSSSAG00000034932)	ENSSSAG00000003488	ENSSSAG00000090012	hmg20b (ENSSSAG00000003006)	btbd2a (ENSSSAG00000002767)	ENSSSAG00000002699 #25	creb3l3a (ENSSSAG00000002670) #21	rxfp3.2b (ENSSSAG00000019275)	ENSSSAG00000002655	celf5a (ENSSSAG00000002383)	rgmd (ENSSSAG00000064525)	hsd11b1la (ENSSSAG00000121503)
Huchen	MODERN SPECIES	64	crlf1b (ENSHHUG00000042845)	tmem59l (ENSHHUG00000042830)	ssbp4 (ENSHHUG00000042772)	fkbp8 (ENSHHUG00000042751)	ell (ENSHHUG00000042721)	DOT1L (ENSHHUG00000042663)	amh (ENSHHUG00000042652)	oaz1a (ENSHHUG00000042642)	ENSHHUG00000042639	org (ENSHHUG00000042630)	lingo3a (ENSHHUG00000042627)	ENSHHUG00000042624	ONECUT3 (ENSHHUG00000042617)	foxq2 (ENSHHUG00000042609)	pias4a (ENSHHUG00000042579) #24	map2k2a (ENSHHUG00000042167) #22	ENSHHUG00000042158	tcf3b (ENSHHUG00000042110)	UQCR11 (ENSHHUG00000042104)	ENSHHUG00000042074	mbd3b (ENSHHUG00000041665)	ENSHHUG00000041423	hmg20b (ENSHHUG00000041407)	btbd2a (ENSHHUG00000041383)	eef2b (ENSHHUG00000041336) #25	creb3l3a (ENSHHUG00000041330) #21	rxfp3.2b (ENSHHUG00000041329)	celf5a (ENSHHUG00000041316)	rgmd (ENSHHUG00000041314)	hsd11b1la (ENSHHUG00000041313)	micos13 (ENSHHUG00000041311)
Salmoninae	ANCESTRAL SPECIES	55	ENSGT00940000156569.a.b.b.e	ENSGT00390000008279.b.d	ENSGT00950000183049.C.a.a.b	ENSGT00940000156705.e	ENSGT00940000155914.c.a.a	ENSGT00390000013515.h	ENSGT00940000179866	ENSGT00940000159808.f.b	ENSGT00940000164500.b.d	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b.b	ENSGT00940000166634.f	ENSGT01030000234539.a.a.a.f.b #24	ENSGT00940000153487.b.a.s.a.d #22	ENSGT00940000166752.f	ENSGT00940000157036.e.a.c	ENSGT00970000193487	ENSGT00950000183005.b.b.d	ENSGT00940000161905.a
Huchen	MODERN SPECIES	2056												ENSHHUG00000002729	ENSHHUG00000002757	foxq2 (ENSHHUG00000002763)	pias4a (ENSHHUG00000002772) #24	map2k2a (ENSHHUG00000002801) #22	ENSHHUG00000003181	tcf3b (ENSHHUG00000003206)	ENSHHUG00000003358	ENSHHUG00000003376	ENSHHUG00000003458	ENSHHUG00000003479	unc13a (ENSHHUG00000003518)
Salmoninae_a	ANCESTRAL SPECIES	9	ENSGT00390000008279.b.d	ENSGT00950000183049.C.a.a.b	ENSGT00940000156705.e	ENSGT00940000155914.c.a.a	ENSGT00390000013515.h	ENSGT00940000179866.a	ENSGT00940000159808.f.b	ENSGT01010000226535	ENSGT00940000164500.b.d	ENSGT00940000164108.b.a.d	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b.b	ENSGT00940000166634.f	ENSGT01030000234539.a.a.a.f.b #24	ENSGT00940000153487.b.a.s.a.d #22	ENSGT00940000166752.f	ENSGT00940000157036.e.a.c	ENSGT00970000193487	ENSGT00950000183005.b.b.d	ENSGT00940000154929.B.g.b	ENSGT00940000161213.d	ENSGT00940000154662.d.l.a.b #25	ENSGT00940000159261.d.a.c #21	ENSGT01030000234534.B.a.a.a.a.a.a.a	ENSGT00940000154716.hc	ENSGT00940000154201.a.a.b.d.cb.b.b	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a.c	ENSGT00940000162487.t.b	ENSGT00390000002629.v
Salmo	ANCESTRAL SPECIES	20	ENSGT00390000008279.b.d	ENSGT00950000183049.C.a.a.b	ENSGT00940000156705.e	ENSGT00940000155914.c.a.a	ENSGT00390000013515.h	ENSGT00940000179866.a	ENSGT00940000159808.f.b	ENSGT01010000226535	ENSGT00940000164500.b.d	ENSGT00940000164108.b.a.d	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b.b	ENSGT00940000166634.f	ENSGT01030000234539.a.a.a.f.b #24	ENSGT00940000153487.b.a.s.a.d #22	ENSGT00940000166752.f	ENSGT00940000157036.e.a.c	ENSGT01100000264042	ENSGT00950000183005.b.b.d	ENSGT00940000154929.B.g.b	ENSGT00940000161213.d	ENSGT00940000154662.d.l.a.b #25	ENSGT00940000159261.d.a.c #21	ENSGT01030000234534.B.a.a.a.a.a.a.a	ENSGT00940000154716.hc	ENSGT00940000154201.a.a.b.d.cb.b.b	ENSGT00950000183112.b.a.a.a.c	ENSGT00940000177291	ENSGT00940000162487.t.b	ENSGT00390000002629.v
Atlantic salmon	MODERN SPECIES	15	ENSSSAG00000118135	ssbp4 (ENSSSAG00000009016)	ENSSSAG00000108322	ell (ENSSSAG00000009143)	ENSSSAG00000009382	oaz1s (ENSSSAG00000009700)	ENSSSAG00000009718	ENSSSAG00000009764	lingo3a (ENSSSAG00000110799)	ENSSSAG00000082536	ENSSSAG00000112330	ENSSSAG00000101819	ENSSSAG00000009895	ENSSSAG00000009906 #24	foxq2 (ENSSSAG00000009926)	mp2k2 (ENSSSAG00000009933) #22	tcf3b (ENSSSAG00000010042)	ENSSSAG00000094304	ENSSSAG00000105808	ENSSSAG00000010477	hmg20b (ENSSSAG00000017779)	ef2 (ENSSSAG00000017975) #25	creb3l3a (ENSSSAG00000018991) #21	celf5a (ENSSSAG00000019628)	rgmd (ENSSSAG00000020190)	ENSSSAG00000020311	hsd11b1la (ENSSSAG00000020651)	micos13 (ENSSSAG00000105399)	ENSSSAG00000025124	ENSSSAG00000025343	ENSSSAG00000025551
River trout	MODERN SPECIES	33	crlf1b (ENSSTUG00000005109)	tmem59l (ENSSTUG00000005117)	ssbp4 (ENSSTUG00000005138)	fkbp8 (ENSSTUG00000005192)	ell (ENSSTUG00000005235)	ENSSTUG00000005243	DOT1L (ENSSTUG00000005256)	ENSSTUG00000005384	oaz1a (ENSSTUG00000005404)	lingo3a (ENSSTUG00000005411)	nfil3-4 (ENSSTUG00000005418)	ENSSTUG00000005431	ENSSTUG00000005496	foxq2 (ENSSTUG00000005501)	pias4a (ENSSTUG00000005509) #24	map2k2a (ENSSTUG00000005571) #22	ENSSTUG00000005792	tcf3b (ENSSTUG00000005813)	ENSSTUG00000005992	ENSSTUG00000006003	ENSSTUG00000006148	hmg20b (ENSSTUG00000008986)	ENSSTUG00000009034 #25	creb3l3a (ENSSTUG00000009397) #21	rxfp3.2b (ENSSTUG00000009419)	ENSSTUG00000009422	celf5a (ENSSTUG00000009429)	rgmd (ENSSTUG00000009445)	ENSSTUG00000009450	hsd11b1la (ENSSTUG00000009458)	micos13 (ENSSTUG00000009464)
Oncorhynchus	ANCESTRAL SPECIES	51	ENSGT00940000156569.a.b.b.e	ENSGT00390000008279.b.d	ENSGT00950000183049.C.a.a.b	ENSGT00940000156705.e	ENSGT00940000155914.c.a.a	ENSGT00390000013515.h	ENSGT00940000159808.f.b	ENSGT01010000226535	ENSGT00940000164500.b.d	ENSGT00940000164108.b.a.d	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b.b	ENSGT00940000166634.f	ENSGT01030000234539.a.a.a.f.b #24	ENSGT00940000153487.b.a.s.a.d #22	ENSGT00940000166752.f	ENSGT00940000157036.e.a.c	ENSGT00970000193487	ENSGT00950000183005.b.b.d	ENSGT00940000154929.B.g.b	ENSGT00940000161213.d	ENSGT00940000154662.d.l.a.b #25	ENSGT00940000159261.d.a.c #21	ENSGT01030000234534.B.a.a.a.a.a.a.a	ENSGT00940000154716.hc.f	ENSGT00940000154201.a.a.b.d.cb.b.b	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a.c	ENSGT00940000162487.t.b	ENSGT00390000002629.v
Oncorhynchus_a	ANCESTRAL SPECIES	36	ENSGT00940000166035	ENSGT00940000156569.a.b.b.e	ENSGT00390000008279.b.d	ENSGT00950000183049.C.a.a.b	ENSGT00940000156705.e	ENSGT00940000155914.c.a.a	ENSGT00390000013515.h	ENSGT00940000159808.f.b	ENSGT01010000226535	ENSGT00940000164500.b.d	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b.b	ENSGT00940000166634.f	ENSGT01030000234539.a.a.a.f.b #24	ENSGT00940000153487.b.a.s.a.d #22	ENSGT00940000166752.f	ENSGT00940000157036.e.a.c	ENSGT00950000183005.b.b.d	ENSGT00940000154929.B.g.b	ENSGT00940000161213.d	ENSGT00940000154662.d.l.a.b #25	ENSGT00940000159261.d.a.c #21	ENSGT01030000234534.B.a.a.a.a.a.a.a	ENSGT00940000154716.hc.f	ENSGT00940000154201.a.a.b.d.cb.b.b	ENSGT00940000177291	ENSGT00950000183112.b.a.a.a.c	ENSGT00940000162487.t.b	ENSGT00390000002629.v.a	ENSGT00950000182925.C.a.b.f
Coho salmon	MODERN SPECIES	1	crlf1b (ENSOKIG00005022067)	tmem59l (ENSOKIG00005022039)	ssbp4 (ENSOKIG00005022029)	fkbp8 (ENSOKIG00005022008)	ell (ENSOKIG00005021839)	DOT1L (ENSOKIG00005021608)	oaz1a (ENSOKIG00005021515)	ENSOKIG00005021501	lingo3a (ENSOKIG00005021495)	ENSOKIG00005021466	ENSOKIG00005021462	ENSOKIG00005021436	ENSOKIG00005021427	foxq2 (ENSOKIG00005021422)	pias4a (ENSOKIG00005021351) #24	map2k2a (ENSOKIG00005021116) #22	ENSOKIG00005021093	tcf3b (ENSOKIG00005020656)	ENSOKIG00005020581	ENSOKIG00005011326	hmg20b (ENSOKIG00005010920)	ENSOKIG00005010454 #25	creb3l3a (ENSOKIG00005010435) #21	rxfp3.2b (ENSOKIG00005010430)	ENSOKIG00005010427	ENSOKIG00005010423	celf5a (ENSOKIG00005010397)	ENSOKIG00005010381	rgmd (ENSOKIG00005010373)	hsd11b1la (ENSOKIG00005010368)	micos13 (ENSOKIG00005010356)
Chinook salmon	MODERN SPECIES		ENSOTSG00005004591	ENSOTSG00005004589	FRMPD3 (ENSOTSG00005004588)	prps1b (ENSOTSG00005004571)	SLC25A53 (ENSOTSG00005004570)	tmsb1 (ENSOTSG00005004569)	zgc:66447 (ENSOTSG00005004567)	znf711 (ENSOTSG00005004563)	kctd12b (ENSOTSG00005004559)	lingo3a (ENSOTSG00005004558)	ENSOTSG00005004552	ONECUT3 (ENSOTSG00005004550)	foxq2 (ENSOTSG00005004549)	pias4a (ENSOTSG00005004547) #24	ENSOTSG00005004545	map2k2a (ENSOTSG00005004423) #22	ENSOTSG00005004422	tcf3b (ENSOTSG00005004420)	ENSOTSG00005004367	ENSOTSG00005000404	hmg20b (ENSOTSG00005000355)	ENSOTSG00005000252 #25	creb3l3a (ENSOTSG00005000251) #21	rxfp3.2b (ENSOTSG00005000250)	ENSOTSG00005000249	ENSOTSG00005000248	celf5a (ENSOTSG00005000247)	ENSOTSG00005000246	rgmd (ENSOTSG00005000245)	hsd11b1la (ENSOTSG00005000244)	micos13 (ENSOTSG00005000242)
Rainbow trout	MODERN SPECIES	22	ENSOMYG00000024438	ENSOMYG00000066284	oaz1a (ENSOMYG00000024421)	ENSOMYG00000064019	lingo3a (ENSOMYG00000024403)	nfil3-4 (ENSOMYG00000024396)	ENSOMYG00000049165	ENSOMYG00000024393	ENSOMYG00000073292	ENSOMYG00000052507	ENSOMYG00000024373	ENSOMYG00000024360	foxq2 (ENSOMYG00000024358)	pias4a (ENSOMYG00000024328) #24	ENSOMYG00000024289	tmek (ENSOMYG00000024021) #22	ENSOMYG00000023916	tcf3b (ENSOMYG00000023660)	ENSOMYG00000023451	ENSOMYG00000023322	ENSOMYG00000017997	hmg20b (ENSOMYG00000017672)	ENSOMYG00000016922 #25	creb3l3a (ENSOMYG00000016863) #21	rxfp3.2b (ENSOMYG00000066614)	ENSOMYG00000076062	celf5a (ENSOMYG00000057546)	ENSOMYG00000016771	rgmd (ENSOMYG00000016763)	hsd11b1la (ENSOMYG00000016728)	micos13 (ENSOMYG00000016755)
Northern pike	MODERN SPECIES	7	tmem59l (ENSELUG00000017649)	ENSELUG00000027587	ssbp4 (ENSELUG00000017751)	fkbp8 (ENSELUG00000017800)	ell (ENSELUG00000017856)	DOT1L (ENSELUG00000017947)	amh (ENSELUG00000001523)	oaz1a (ENSELUG00000018009)	org (ENSELUG00000018048)	lingo3a (ENSELUG00000031632)	nfil3-4 (ENSELUG00000018073)	ENSELUG00000018163	ONECUT3 (ENSELUG00000018173)	foxq2 (ENSELUG00000000758)	pias4a (ENSELUG00000018209) #24	map2k2a (ENSELUG00000018291) #22	ENSELUG00000018331	tcf3b (ENSELUG00000000785)	UQCR11 (ENSELUG00000018436)	ENSELUG00000018490	mbd3b (ENSELUG00000018581)	unc13a (ENSELUG00000018664)	hmg20b (ENSELUG00000018708)	btbd2a (ENSELUG00000018789)	eef2b (ENSELUG00000018859) #25	creb3l3a (ENSELUG00000018885) #21	rxfp3.2b (ENSELUG00000018897)	celf5a (ENSELUG00000018986)	rgmd (ENSELUG00000019027)	hsd11b1la (ENSELUG00000019096)	micos13 (ENSELUG00000025803)
Osteoglossiformes	ANCESTRAL SPECIES	21	ENSGT00950000183049.C.a.a	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT00940000159808.i	ENSGT00940000157066.p	ENSGT00390000006809	ENSGT00940000164500.b	ENSGT00940000164108.b.a	ENSGT00940000164108.b.b	ENSGT00940000160463	ENSGT00950000183103.d.b.a.b	ENSGT00940000166634	ENSGT01030000234539.a.a.a.f #24	ENSGT00940000153487.b.a.s.a #22	ENSGT00940000166752.a	ENSGT00940000157036.e.a	ENSGT00390000018299	ENSGT00950000183005.b.b	ENSGT00940000162613.c	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000159179.g	ENSGT00940000154662.d.d.a #25	ENSGT00940000159261.d.a #21	ENSGT01030000234534.B.a.a.a.a.a.a	ENSGT00390000002629	ENSGT00910000144271.A	ENSGT00910000144271.B
Asian bonytongue	MODERN SPECIES	24	ssbp4 (ENSSFOG00015029509)	fkbp8 (ENSSFOG00015003342)	ell (ENSSFOG00015003353)	ENSSFOG00015027631	DOT1L (ENSSFOG00015003432)	amh (ENSSFOG00015003441)	oaz1a (ENSSFOG00015003448)	ENSSFOG00015003472	org (ENSSFOG00015003484)	lingo3a (ENSSFOG00015026385)	nfil3-4 (ENSSFOG00015027003)	ENSSFOG00015003531	ENSSFOG00015003587	foxq2 (ENSSFOG00015003608)	pias4a (ENSSFOG00015028592) #24	map2k2a (ENSSFOG00015032068) #22	ENSSFOG00015003716	tcf3b (ENSSFOG00015003739)	UQCR11 (ENSSFOG00015033314)	MBD3 (ENSSFOG00015003758)	MEX3D (ENSSFOG00015025386)	mbd3b (ENSSFOG00015003926)	ENSSFOG00015004025	hmg20b (ENSSFOG00015004195)	BTBD2 (ENSSFOG00015025422)	ENSSFOG00015004255 #25	creb3l3a (ENSSFOG00015004320) #21	rxfp3.2b (ENSSFOG00015004360)	ENSSFOG00015004376	rgmd (ENSSFOG00015004418)	hsd11b1la (ENSSFOG00015004455)
P. kingsleyae	MODERN SPECIES	4	fkbp8 (ENSPKIG00000017759)	ell (ENSPKIG00000017796)	ISYNA1 (ENSPKIG00000017847)	DOT1L (ENSPKIG00000017910)	amh (ENSPKIG00000017996)	oaz1a (ENSPKIG00000018015)	ENSPKIG00000018026	org (ENSPKIG00000018053)	lingo3a (ENSPKIG00000018082)	nfil3-4 (ENSPKIG00000018095)	ENSPKIG00000018103	ATP8B3 (ENSPKIG00000018165)	ENSPKIG00000018283	foxq2 (ENSPKIG00000018304)	pias4a (ENSPKIG00000018329) #24	map2k2a (ENSPKIG00000018395) #22	ENSPKIG00000018457	tcf3b (ENSPKIG00000018482)	UQCR11 (ENSPKIG00000018517)	MBD3 (ENSPKIG00000018562)	MEX3D (ENSPKIG00000018608)	mbd3b (ENSPKIG00000018639)	unc13a (ENSPKIG00000018698)	hmg20b (ENSPKIG00000018784)	BTBD2 (ENSPKIG00000018844)	ENSPKIG00000018903 #25	rxfp3.2b (ENSPKIG00000018949)	ENSPKIG00000018966
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000153487.b.a.s.b #22
Clupeocephala	ANCESTRAL SPECIES	577															ENSGT01030000234539.a.a.a.e #24	ENSGT00940000153487.b.a.s.b #22	ENSGT00940000157036.e.b	ENSGT01000000214836
Otomorpha	ANCESTRAL SPECIES	201						ENSGT00390000012355.A.b	ENSGT00940000155914.c.b	ENSGT00390000018395	ENSGT00500000045074	ENSGT00390000005235	ENSGT00720000108823	ENSGT00410000028808	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a	ENSGT01030000234539.a.a.a.e #24	ENSGT00940000153487.b.a.s.b #22	ENSGT00940000157036.e.b	ENSGT00390000018299	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000159179.g	ENSGT00940000154662.d #25	ENSGT00940000159261.d.b #21	ENSGT01030000234518.B.a.a	ENSGT00940000160088 #20	ENSGT00940000154716.hc.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a
Otophysi	ANCESTRAL SPECIES	3	ENSGT01100000263491.a.b.a.b.a.b	ENSGT01100000263491.a.b.a.a.b.a	ENSGT00940000165396.B	ENSGT00940000161411	ENSGT01100000263495.A.a.b.b.a.a.a.b	ENSGT01030000234576.D.a.a.b.a.a.b.a.a	ENSGT00390000012355.A.b	ENSGT00390000018395	ENSGT00500000045074	ENSGT00390000005235	ENSGT00720000108823	ENSGT00410000028808	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a	ENSGT01030000234539.a.a.a.e #24	ENSGT00940000153487.b.a.s.b #22	ENSGT00940000157036.e.b	ENSGT00390000018299	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000159179.g	ENSGT00940000154662.d #25	ENSGT00390000002913	ENSGT00940000158163.a	ENSGT00940000158649.a.b	ENSGT00390000012913.a.a	ENSGT00940000159946.h	ENSGT00950000183110.b.a.d
Characiphysae	ANCESTRAL SPECIES	34	ENSGT01100000263491.a.b.a.b.a.b	ENSGT01100000263491.a.b.a.a.b.a	ENSGT00940000165396.B	ENSGT00940000161411	ENSGT01100000263495.A.a.b.b.a.a.a.b	ENSGT01030000234576.D.a.a.b.a.a.b.a.a	ENSGT00390000012355.A.b	ENSGT00390000018395	ENSGT00500000045074	ENSGT00390000005235	ENSGT00720000108823	ENSGT00410000028808	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a	ENSGT01030000234539.a.a.a.e #24	ENSGT00940000153487.b.a.s.b #22	ENSGT00940000157036.e.b	ENSGT00390000018299	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000159179.g	ENSGT00940000154662.d #25	ENSGT00390000002913	ENSGT00940000158163.a	ENSGT00940000158649.a.b	ENSGT00390000012913.a.a	ENSGT00940000159946.h	ENSGT00950000183110.b.a.d	ENSGT00390000013841	ENSGT00940000161913
Channel catfish	MODERN SPECIES	12	ENSIPUG00000018967	si:ch211-155e24.3 (ENSIPUG00000018973)	ENSIPUG00000018980	ENSIPUG00000018985	ENSIPUG00000018996	ENSIPUG00000019007	ENSIPUG00000019011	isyna1 (ENSIPUG00000019018)	Tpgs1 (ENSIPUG00000019039)	plekhj1 (ENSIPUG00000019044)	sf3a2 (ENSIPUG00000019071)	ENSIPUG00000019085	ENSIPUG00000019097	ONECUT3 (ENSIPUG00000019104)	pias4b (ENSIPUG00000019122) #24	map2k2b (ENSIPUG00000019152) #22	tcf3a (ENSIPUG00000019252)	ENSIPUG00000019406	MBD3 (ENSIPUG00000019419)	MEX3D (ENSIPUG00000019444)	UNC13A (ENSIPUG00000019460)	btbd2 (ENSIPUG00000019506)	Armc6 (ENSIPUG00000019528)	slc25a42 (ENSIPUG00000019552)	Ncan (ENSIPUG00000019592)	tm6sf2 (ENSIPUG00000019656)	sbno2 (ENSIPUG00000019672)	ARHGAP45 (ENSIPUG00000019753)	polr2ea (ENSIPUG00000019801)	gpx4b (ENSIPUG00000019856)	PIP5K1C (ENSIPUG00000019881) #35
Characiphysae_b	ANCESTRAL SPECIES	57	ENSGT00390000014633	ENSGT00980000199858	ENSGT00940000157535.m.b	ENSGT01100000263491.a.b.a.a.b.a	ENSGT00940000165396.B	ENSGT01100000263495.A.a.b.b.a.a.a.b	ENSGT00390000012355.A.b	ENSGT00390000018395	ENSGT00500000045074	ENSGT00390000005235	ENSGT00720000108823	ENSGT00410000028808	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a	ENSGT01030000234539.a.a.a.e #24	ENSGT00940000153487.b.a.s.b #22	ENSGT00940000157036.e.b	ENSGT00390000018299.b	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000159179.g	ENSGT00940000154662.d #25	ENSGT00390000002913	ENSGT00940000158163.a	ENSGT00940000158649.a.b	ENSGT00390000012913.a.a	ENSGT00940000159946.h	ENSGT00950000183110.b.a.d	ENSGT00390000013841	ENSGT00940000161913
Characoidei	ANCESTRAL SPECIES	45	ENSGT00390000014633	ENSGT00980000199858	ENSGT00940000157535.m.b	ENSGT01100000263491.a.b.a.a.b.a	ENSGT00940000165396.B	ENSGT01100000263495.A.a.b.b.a.a.a.b	ENSGT00390000012355.A.b	ENSGT00390000018395	ENSGT00500000045074	ENSGT00390000005235	ENSGT00720000108823	ENSGT00410000028808	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a	ENSGT01030000234539.a.a.a.e #24	ENSGT00940000153487.b.a.s.b #22	ENSGT00940000157036.e.b	ENSGT00390000018299.b	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000159179.g	ENSGT00940000154662.d #25	ENSGT00390000002913	ENSGT00940000158163.a	ENSGT00940000158649.a.b	ENSGT00390000012913.a.a	ENSGT00940000159946.h	ENSGT00950000183110.b.a.d	ENSGT00390000013841	ENSGT00940000161913
Red-bellied piranha	MODERN SPECIES	48	si:ch211-155e24.3 (ENSPNAG00000004259)	ENSPNAG00000027788	ENSPNAG00000027768	ENSPNAG00000027738	ENSPNAG00000027701	ENSPNAG00000027685	ENSPNAG00000027672	ISYNA1 (ENSPNAG00000027668)	tpgs1 (ENSPNAG00000027617)	plekhj1 (ENSPNAG00000027612)	sf3a2 (ENSPNAG00000027582)	ENSPNAG00000027575	ENSPNAG00000027546	ENSPNAG00000027526	pias4b (ENSPNAG00000027507) #24	map2k2b (ENSPNAG00000027497) #22	tcf3a (ENSPNAG00000027437)	UQCR11 (ENSPNAG00000027292)	mbd3a (ENSPNAG00000027268)	MEX3D (ENSPNAG00000027243)	ENSPNAG00000027188	BTBD2 (ENSPNAG00000027052)	eef2b (ENSPNAG00000027010) #25	ARMC6 (ENSPNAG00000006370)	slc25a42 (ENSPNAG00000026892)	ENSPNAG00000026808	tm6sf2a (ENSPNAG00000026691)	sbno2a (ENSPNAG00000026609)	ARHGAP45 (ENSPNAG00000026372)	POLR2E (ENSPNAG00000026263)	gpx4b (ENSPNAG00000026183)
Mexicana tetra	MODERN SPECIES	8	ENSAMXG00000010432	ENSAMXG00000038866	ENSAMXG00000030414	ENSAMXG00000042671	ENSAMXG00000030982	ENSAMXG00000041260	ENSAMXG00000036071	ENSAMXG00000041952	ISYNA1 (ENSAMXG00000031770)	tpgs1 (ENSAMXG00000029816)	plekhj1 (ENSAMXG00000041405)	sf3a2 (ENSAMXG00000032428)	ENSAMXG00000044021	ENSAMXG00000006507	pias4b (ENSAMXG00000040409) #24	map2k2b (ENSAMXG00000032535) #22	tcf3a (ENSAMXG00000035851)	UQCR11 (ENSAMXG00000035427)	mbd3a (ENSAMXG00000041394)	MEX3D (ENSAMXG00000042500)	UNC13A (ENSAMXG00000017978)	BTBD2 (ENSAMXG00000006626)	eef2b (ENSAMXG00000006645) #25	ARMC6 (ENSAMXG00000006664)	slc25a42 (ENSAMXG00000006680)	ENSAMXG00000038802	tm6sf2a (ENSAMXG00000040821)	sbno2a (ENSAMXG00000018868)	ARHGAP45 (ENSAMXG00000018912)	POLR2E (ENSAMXG00000018915)	gpx4b (ENSAMXG00000041988)
Electric eel	MODERN SPECIES	399		ENSEEEG00000016767	NCSTN (ENSEEEG00000016695)	fcer1gl (ENSEEEG00000016681)	ENSEEEG00000016678	ENSEEEG00000016621	ENSEEEG00000016607	ENSEEEG00000016603	ISYNA1 (ENSEEEG00000016595)	tpgs1 (ENSEEEG00000016591)	plekhj1 (ENSEEEG00000016590)	sf3a2 (ENSEEEG00000016587)	ENSEEEG00000016584	ONECUT3 (ENSEEEG00000016582)	pias4b (ENSEEEG00000016580) #24	map2k2b (ENSEEEG00000016135) #22	ENSEEEG00000016119	tcf3a (ENSEEEG00000016117)	UQCR11 (ENSEEEG00000016115)	mbd3a (ENSEEEG00000016069)	MEX3D (ENSEEEG00000016066)	ENSEEEG00000016064	BTBD2 (ENSEEEG00000016046)	ARMC6 (ENSEEEG00000016041)	slc25a42 (ENSEEEG00000016040)
Cyprinoidei	ANCESTRAL SPECIES	114	ENSGT00940000157535.m.b	ENSGT01100000263491.a.b.a.b.a.b	ENSGT01100000263491.a.b.a.a.b.a	ENSGT00940000165396.B	ENSGT01100000263495.A.a.b.b.a.a.a.b	ENSGT01030000234576.D.a.a.b.a.a.b.a.a	ENSGT00390000012355.A.b	ENSGT00390000018395	ENSGT00500000045074	ENSGT00390000005235	ENSGT00720000108823	ENSGT00410000028808	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a	ENSGT01030000234539.a.a.a.e #24	ENSGT00940000153487.b.a.s.b #22	ENSGT00940000157036.e.b	ENSGT00390000018299	ENSGT00950000183005.b.a.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000159179.g	ENSGT00940000154662.d #25	ENSGT00390000002913	ENSGT00940000158163.a	ENSGT00940000158649.a.b.a	ENSGT00390000012913.a.a	ENSGT00940000159946.h	ENSGT00950000183110.b.a.d
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	487																ENSGT00940000153487.b.a.s.b.a #22	ENSGT00940000157036.e.b.h	ENSGT01000000214836	ENSGT00950000183005.b.a.b	ENSGT00940000162613.f	ENSGT00940000161905.b.b	ENSGT00940000159179.g.b	ENSGT00940000154662.d.u #25	ENSGT00940000159261.d.a.a #21	ENSGT01030000234534.B.a.a.a.a.a.a.c	ENSGT00940000154716.hc.b	ENSGT00950000183112.b.a.a.a.a	ENSGT00940000162487.u.a	ENSGT00390000002629.ab	ENSGT00910000144271.A.b.f	ENSGT00910000144271.B.a.b.b.a.b
Goldfish	MODERN SPECIES	19	ENSCARG00000007831	ENSCARG00000007840	ENSCARG00000007855	ENSCARG00000007868	ENSCARG00000007876	ENSCARG00000007884	ENSCARG00000007894	ENSCARG00000007901	ISYNA1 (ENSCARG00000007917)	plekhj1 (ENSCARG00000007964)	sf3a2 (ENSCARG00000007972)	ENSCARG00000007980	ONECUT3 (ENSCARG00000007986)	ENSCARG00000007994	ENSCARG00000008001	map2k2b (ENSCARG00000008010) #22	tcf3a (ENSCARG00000008083)	UQCR11 (ENSCARG00000008133)	mbd3a (ENSCARG00000008142)	MEX3D (ENSCARG00000008158)	UNC13A (ENSCARG00000008314)	BTBD2 (ENSCARG00000009449)	gpx4b (ENSCARG00000009457)	ENSCARG00000009474	ENSCARG00000009536 #35	rab11bb (ENSCARG00000009876)	CTXN1 (ENSCARG00000009924)	ENSCARG00000009932	jund (ENSCARG00000009940)	pgpep1 (ENSCARG00000009948)	upf1 (ENSCARG00000009967)
Cyprininae_a	ANCESTRAL SPECIES	59	ENSGT00990000203615.b.a.a.a.a.g.a.a.a	ENSGT00950000182991.A.b.a.b	ENSGT01100000263538.A.a.a.b.a.d.e.a	ENSGT00390000014633.a.b	ENSGT00980000199858.a	ENSGT00940000157535.m.b.d	ENSGT00940000165396.B.t.b	ENSGT01100000263495.A.a.b.b.a.a.a.b.a.b	ENSGT00390000012355.A.b	ENSGT00390000018395.b	ENSGT00390000005235.g	ENSGT00720000108823.l	ENSGT00940000164500.a.b	ENSGT00940000164500.a.a.b	ENSGT00950000183103.d.b.a.a.j	ENSGT00940000153487.b.a.s.b.a #22	ENSGT00940000157036.e.b.h	ENSGT00950000183005.b.a.b	ENSGT00940000162613.f	ENSGT00940000161905.b.b	ENSGT00940000159179.g.b	ENSGT00940000154662.d.u #25	ENSGT00390000002913	ENSGT00940000158163.a.b	ENSGT00940000158649.a.b.a.a	ENSGT00390000012913.a.a.c	ENSGT00940000159946.h.a	ENSGT00950000183110.b.a.d.b	ENSGT00940000161913.d.a.b	ENSGT00940000159258.c.b #35	ENSGT00940000163126.a.a.a.a
Common carp reference	MODERN SPECIES	29	ENSCCRG00000034048	fcer1gl (ENSCCRG00000040516)	ENSCCRG00000071475	ENSCCRG00000082820	ENSCCRG00000069403	ENSCCRG00000026464	ENSCCRG00000062737	sf3a2 (ENSCCRG00000040628)	plekhj1 (ENSCCRG00000064151)	ENSCCRG00000020966	ONECUT3 (ENSCCRG00000020970)	ENSCCRG00000079964	ENSCCRG00000079287	ENSCCRG00000073979	ENSCCRG00000062410	map2k2b (ENSCCRG00000014252) #22	tcf3a (ENSCCRG00000035581)	mbd3a (ENSCCRG00000035518)	ENSCCRG00000055311	eef2b (ENSCCRG00000064570) #25	MEX3D (ENSCCRG00000055684)	ENSCCRG00000070880	ENSCCRG00000014462	ENSCCRG00000035161	slc25a42 (ENSCCRG00000082753)	ENSCCRG00000001521	tm6sf2a (ENSCCRG00000061917)	sbno2a (ENSCCRG00000078397)	ENSCCRG00000022982	gpx4b (ENSCCRG00000058980)	ENSCCRG00000037725 #35
Golden-line barbel	MODERN SPECIES	455				ENSSGRG00000054296	ENSSGRG00000054336	ENSSGRG00000054337	ENSSGRG00000054338	ENSSGRG00000000121	ENSSGRG00000000124	ENSSGRG00000000126	ISYNA1 (ENSSGRG00000000134)	plekhj1 (ENSSGRG00000000148)	sf3a2 (ENSSGRG00000000165)	ENSSGRG00000000180	ENSSGRG00000000191	map2k2b (ENSSGRG00000000219) #22	tcf3a (ENSSGRG00000000322)	ENSSGRG00000000377	MEX3D (ENSSGRG00000000455)	BTBD2 (ENSSGRG00000000457)	eef2b (ENSSGRG00000000497) #25	ARMC6 (ENSSGRG00000001841)	slc25a42 (ENSSGRG00000001842)	ENSSGRG00000001845	tm6sf2a (ENSSGRG00000001851)	sbno2a (ENSSGRG00000001866)	ARHGAP45 (ENSSGRG00000002091)	gpx4b (ENSSGRG00000002092)	ENSSGRG00000002108 #35	rab11bb (ENSSGRG00000004582)	CTXN1 (ENSSGRG00000004684)
Cyprininae	ANCESTRAL SPECIES	366	ENSGT00940000157535.m.b.c	ENSGT01100000263491.a.b.a.b.a.b	ENSGT00940000165396.B.s	ENSGT01100000263491.a.b.a.a.b.a	ENSGT00940000165396.B.t.a	ENSGT01100000263495.A.a.b.b.a.a.a.b.a.a	ENSGT00390000018395.a	ENSGT00500000045074	ENSGT00390000005235	ENSGT00720000108823.k.a	ENSGT00940000164500.a.a.a	ENSGT00720000108823.k.b	ENSGT00940000164500.a.a.b	ENSGT00950000183103.d.b.a.a	ENSGT01030000234539.a.a.a.e #24	ENSGT00940000153487.b.a.s.b.b #22	ENSGT00940000157036.e.b.g	ENSGT00950000183005.b.a.a	ENSGT00940000162613.e	ENSGT00940000161905.b.a	ENSGT00940000159179.g.a
Cyprininae_a	ANCESTRAL SPECIES	347	ENSGT00390000014633.a.a	ENSGT00980000199858.b	ENSGT00940000157535.m.b.c	ENSGT01100000263491.a.b.a.b.a.b	ENSGT00940000165396.B.s	ENSGT01100000263491.a.b.a.a.b.a	ENSGT00940000165396.B.t.a	ENSGT01100000263495.A.a.b.b.a.a.a.b.a.a	ENSGT00390000018395.a	ENSGT00500000045074	ENSGT00390000005235.h	ENSGT00720000108823.k.a	ENSGT00940000164500.a.a.a	ENSGT00950000183103.d.b.a.a.i	ENSGT01030000234539.a.a.a.e #24	ENSGT00940000153487.b.a.s.b.b #22	ENSGT00940000157036.e.b.g	ENSGT00950000183005.b.a.a	ENSGT00940000162613.e	ENSGT00940000161905.b.a	ENSGT00940000159179.g.a
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	2598																map2k2b (ENSSGRG00000009456) #22
Golden-line barbel	MODERN SPECIES	4316																map2k2b (ENSSGRG00000001610) #22
Common carp reference	MODERN SPECIES	21	pnp5b (ENSCCRG00000065090)	ENSCCRG00000058515	ENSCCRG00000054097	ENSCCRG00000042353	si:ch211-155e24.3 (ENSCCRG00000066415)	ENSCCRG00000040566	ENSCCRG00000069822	ENSCCRG00000040609	tpgs1 (ENSCCRG00000062131)	plekhj1 (ENSCCRG00000040625)	sf3a2 (ENSCCRG00000070094)	ENSCCRG00000064800	ENSCCRG00000063966	ENSCCRG00000029100	pias4b (ENSCCRG00000020596) #24	map2k2b (ENSCCRG00000020612) #22	tcf3a (ENSCCRG00000035505)	ENSCCRG00000079293	MEX3D (ENSCCRG00000058664)	ENSCCRG00000039392	ENSCCRG00000035403	eef2b (ENSCCRG00000035228) #25	ENSCCRG00000011585	slc25a42 (ENSCCRG00000080212)	ENSCCRG00000065346	tm6sf2a (ENSCCRG00000073164)	sbno2a (ENSCCRG00000020152)	ARHGAP45 (ENSCCRG00000012460)	ENSCCRG00000012408	gpx4b (ENSCCRG00000071825)	ENSCCRG00000045930 #35
Zebrafish	MODERN SPECIES	11	ENSDARG00000103284	fcer1gl (ENSDARG00000104077)	ENSDARG00000103148	si:ch211-155e24.3 (ENSDARG00000105127)	ENSDARG00000074846	ENSDARG00000079930	ENSDARG00000092766	ENSDARG00000038476	tpgs1 (ENSDARG00000027547)	plekhj1 (ENSDARG00000025593)	sf3a2 (ENSDARG00000021107)	ENSDARG00000095024	ENSDARG00000067815	ONECUT3 (ENSDARG00000091059)	pias4b (ENSDARG00000042215) #24	map2k2b (ENSDARG00000068918) #22	tcf3a (ENSDARG00000005915)	mbd3a (ENSDARG00000061774)	BTBD2 (ENSDARG00000104653)	eef2b (ENSDARG00000100371) #25	ARMC6 (ENSDARG00000103770)	slc25a42 (ENSDARG00000099368)	ENSDARG00000115552	tm6sf2a (ENSDARG00000105208)	sbno2a (ENSDARG00000098801)	ARHGAP45 (ENSDARG00000052496)	POLR2E (ENSDARG00000074274)	gpx4b (ENSDARG00000076836)	PIP5K1C (ENSDARG00000100313) #35	rab11bb (ENSDARG00000090086)	ctxn1 (ENSDARG00000113270)
Clupeiformes	ANCESTRAL SPECIES	177																ENSGT00940000153487.b.a.s.b #22	ENSGT00940000157036.e.b	ENSGT01000000214836	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000159179.g	ENSGT00940000159261.d.b #21	ENSGT01030000234518.B.a.a	ENSGT00940000160088 #20	ENSGT00940000154716.hc.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a	ENSGT00940000158050
Denticle herring	MODERN SPECIES	14	foxl2b (ENSDCDG00000030447)	per2 (ENSDCDG00000030438)	hes6 (ENSDCDG00000030425)	itm2cb (ENSDCDG00000030421)	lpar5a (ENSDCDG00000030419)	GPR55 (ENSDCDG00000030418)	gigyf2 (ENSDCDG00000030413)	ENSDCDG00000030408	ENSDCDG00000030406	ENSDCDG00000030405	ENSDCDG00000030403	crygn1 (ENSDCDG00000030401)	ACVR2B (ENSDCDG00000029001)	ENSDCDG00000028958	scn12aa (ENSDCDG00000028915)	map2k2b (ENSDCDG00000028530) #22	tcf3a (ENSDCDG00000028515)	ENSDCDG00000028511	mbd3a (ENSDCDG00000028507)	MEX3D (ENSDCDG00000028502)	UNC13A (ENSDCDG00000023562)	BTBD2 (ENSDCDG00000023410)	eef2b (ENSDCDG00000023176) #25	ENSDCDG00000023174	ENSDCDG00000023172 #21	RXFP3 (ENSDCDG00000023171)	sirt6 (ENSDCDG00000023165) #20	ENSDCDG00000022621	HSD11B1L (ENSDCDG00000022481)	ENSDCDG00000022463	ENSDCDG00000022346
Euteleosteomorpha	ANCESTRAL SPECIES	427															ENSGT01030000234539.a.a.a.e #24	ENSGT00940000153487.b.a.s.b #22	ENSGT00940000157036.e.b	ENSGT01000000214836
Protacanthopterygii	ANCESTRAL SPECIES	43	ENSGT01030000234567.B.a.a.b.b.a.a	ENSGT00940000163253.b.c.a.b	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a	ENSGT01030000234539.a.a.a.e #24	ENSGT00940000153487.b.a.s.b #22	ENSGT00940000157036.e.b	ENSGT01000000214836	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000159179.g	ENSGT00940000154662.d.l.b #25	ENSGT00940000159261.d.b #21	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT01030000234518.B.a.a.d	ENSGT00940000160088 #20	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B ##36	ENSGT00940000165656	ENSGT00530000063841.b.b #13
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	182													ENSGT00720000108823.i	ENSGT00940000164500.a.e	ENSGT00950000183103.d.b.a.a.a.a	ENSGT00940000153487.b.a.s.b.c #22	ENSGT00940000157036.e.b.a	ENSGT00950000183005.b.a.e	ENSGT00940000162613.g	ENSGT00940000161905.b	ENSGT00940000159179.g.c	ENSGT00940000154662.d.l.b.a #25	ENSGT00940000159261.d.b #21	ENSGT00940000160088.c #20	ENSGT00940000164811.a.b.b.d	ENSGT00950000183102.B.e ##36	ENSGT00530000063841.b.b #13	ENSGT00940000154737.c.g.c #11	ENSGT00940000164939.a.b.c	ENSGT01040000240444.A.b.a.b.g.a	ENSGT00940000159170.d.c
Salmoninae_a	ANCESTRAL SPECIES	2	ENSGT00940000164495.c.a.e	ENSGT00940000157246.a.e	ENSGT00940000160466.d	ENSGT00390000005847.e	ENSGT00390000009230.b.f	ENSGT00940000158050.h.a.b	ENSGT00410000025695.a.c	ENSGT00940000157113.d.g	ENSGT00940000156523.b.d.c	ENSGT00950000182925.C.a.a.c.a	ENSGT00940000162487.s.b	ENSGT00950000183104.B.a.b.a.a.a	ENSGT00720000108823.i	ENSGT00940000164500.a.e	ENSGT00950000183103.d.b.a.a.a.a	ENSGT00940000153487.b.a.s.b.c #22	ENSGT00940000157036.e.b.a	ENSGT00950000183005.b.a.e	ENSGT00940000162613.g	ENSGT00940000161905.b	ENSGT00940000159179.g.c	ENSGT00940000154662.d.l.b.a #25	ENSGT00940000159261.d.b #21	ENSGT00940000160088.c #20	ENSGT00940000164811.a.b.b.d	ENSGT00950000183102.B.e ##36	ENSGT00940000159179.g.d	ENSGT00940000154662.d.l.b.b #25	ENSGT01030000234518.B.a.a.d	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088.d #20
Oncorhynchus	ANCESTRAL SPECIES	11	ENSGT00940000160486.c.b	ENSGT00950000182893.a.a.b.a.d	ENSGT00730000111114.f	ENSGT00730000111114.e.a.a	ENSGT01070000253775.a.d.a.b.b.h.a.c.a	ENSGT00940000158050.h.a.b	ENSGT00410000025695.a.c	ENSGT00940000157113.d.g	ENSGT00940000156523.b.d.c	ENSGT00950000182925.C.a.a.c.a	ENSGT00940000162487.s.b	ENSGT00950000183104.B.a.b.a.a.a	ENSGT00720000108823.i	ENSGT00940000164500.a.e	ENSGT00950000183103.d.b.a.a.a.a	ENSGT00940000153487.b.a.s.b.c #22	ENSGT00940000157036.e.b.a	ENSGT00950000183005.b.a.e	ENSGT00940000162613.g	ENSGT00940000161905.b	ENSGT00940000159179.g.d	ENSGT00940000154662.d.l.b.b #25	ENSGT01030000234518.B.a.a.d	ENSGT00940000164811.a.b.b.c	ENSGT00950000183102.B.f ##36	ENSGT00940000165656	ENSGT00940000154737.c.g.d #11	ENSGT00940000164939.a.b.d	ENSGT01040000240444.A.b.a.b.g.b	ENSGT00940000159170.d.d	ENSGT00940000155854.b.a.b.d
Oncorhynchus_a	ANCESTRAL SPECIES	24	ENSGT00940000164495.c.a.e	ENSGT00940000160466.d	ENSGT00390000005847.e	ENSGT00950000183067.a.b.b.vb.b	ENSGT00940000158588.d.b.a	ENSGT00940000158050.h.a.b	ENSGT00410000025695.a.c	ENSGT00940000157113.d.g	ENSGT00940000156523.b.d.c	ENSGT00950000182925.C.a.a.c.a	ENSGT00940000162487.s.b	ENSGT00950000183104.B.a.b.a.a.a	ENSGT00720000108823.i	ENSGT00940000164500.a.e	ENSGT00950000183103.d.b.a.a.a.a	ENSGT00940000153487.b.a.s.b.c #22	ENSGT00940000157036.e.b.a	ENSGT00950000183005.b.a.e	ENSGT00940000162613.g	ENSGT00940000161905.b	ENSGT00940000159179.g.d	ENSGT00940000154662.d.l.b.b #25	ENSGT01030000234518.B.a.a.d	ENSGT00940000164811.a.b.b.c	ENSGT00950000183102.B.f ##36	ENSGT00940000165656	ENSGT00940000154737.c.g.d #11	ENSGT00940000164939.a.b.d	ENSGT01040000240444.A.b.a.b.g.b	ENSGT00940000156565.t	ENSGT00940000155854.b.a.b.d
Coho salmon	MODERN SPECIES	19	ENSOKIG00005047957	ENSOKIG00005047964	CIB3 (ENSOKIG00005047974)	pnhd (ENSOKIG00005048003)	ENSOKIG00005048011	RANBP3 (ENSOKIG00005048041)	STK11 (ENSOKIG00005048064)	ENSOKIG00005048082	RNF126 (ENSOKIG00005037713)	ENSOKIG00005037817	ENSOKIG00005037877	ENSOKIG00005037904	ENSOKIG00005037950	sf3a2 (ENSOKIG00005038153)	ENSOKIG00005038182	map2k2b (ENSOKIG00005038237) #22	tcf3a (ENSOKIG00005038925)	mbd3a (ENSOKIG00005039227)	MEX3D (ENSOKIG00005039248)	eef2b (ENSOKIG00005040779) #25	BTBD2 (ENSOKIG00005041142)	ENSOKIG00005041410 #21	ENSOKIG00005041426	sirt6 (ENSOKIG00005041455) #20	cdc34b (ENSOKIG00005041582)	cactin (ENSOKIG00005041624) ##36	stap2a (ENSOKIG00005041672) #13	sh3gl1a (ENSOKIG00005041721) #11	rorcb (ENSOKIG00005041778)	ENSOKIG00005041807	SEMA6B (ENSOKIG00005041814)
Chinook salmon	MODERN SPECIES	20	ENSOTSG00005013370	ENSOTSG00005013371	ENSOTSG00005013380	loxl5b (ENSOTSG00005016013)	klf2b (ENSOTSG00005016015)	stk11 (ENSOTSG00005016016)	ENSOTSG00005016017	rnf126 (ENSOTSG00005016028)	ENSOTSG00005016037	ENSOTSG00005016048	ENSOTSG00005016051	fzr1a (ENSOTSG00005016057)	sf3a2 (ENSOTSG00005016319)	ENSOTSG00005016320	ENSOTSG00005016321	map2k2b (ENSOTSG00005016323) #22	tcf3a (ENSOTSG00005016324)	mbd3a (ENSOTSG00005016345)	MEX3D (ENSOTSG00005016346)	ENSOTSG00005016347	ENSOTSG00005016348	BTBD2 (ENSOTSG00005016354)	eef2b (ENSOTSG00005016745) #25	ENSOTSG00005016747 #21	sirt6 (ENSOTSG00005035921) #20	ENSOTSG00005035923	cactin (ENSOTSG00005035926) ##36	stap2a (ENSOTSG00005035930) #13	sh3gl1a (ENSOTSG00005035932) #11	rorcb (ENSOTSG00005035934)	ENSOTSG00005035936
Rainbow trout	MODERN SPECIES	20	ENSOMYG00000019320	ENSOMYG00000019220	ENSOMYG00000075714	ENSOMYG00000019510	ENSOMYG00000019570	ENSOMYG00000019626	ENSOMYG00000019684	ENSOMYG00000066967	ENSOMYG00000019727	ENSOMYG00000019806	sf3a2 (ENSOMYG00000020220)	ENSOMYG00000020229	ENSOMYG00000067324	ENSOMYG00000020232	ENSOMYG00000020234	map2k2b (ENSOMYG00000020235) #22	tcf3a (ENSOMYG00000020336)	mbd3a (ENSOMYG00000020713)	MEX3D (ENSOMYG00000020732)	ENSOMYG00000012382	ENSOMYG00000021835	eef2b (ENSOMYG00000027146) #25	ENSOMYG00000027393 #21	ENSOMYG00000062249 #20	ENSOMYG00000027418	cactin (ENSOMYG00000027464) ##36	stap2a (ENSOMYG00000027527) #13	sh3gl1a (ENSOMYG00000061237) #11	rorcb (ENSOMYG00000027604)	ENSOMYG00000027625	ENSOMYG00000027655
Salmo	ANCESTRAL SPECIES	5	ENSGT00940000160486.c.b	ENSGT00950000182893.a.a.b.a.d	ENSGT00730000111114.f	ENSGT01070000253775.a.d.a.b.b.h.a.c	ENSGT00390000009230.b.f	ENSGT00940000158050.h.a.b	ENSGT00410000025695.a.c	ENSGT00940000157113.d.g	ENSGT00940000156523.b.d.c	ENSGT00950000182925.C.a.a.c.a	ENSGT00940000162487.s.b	ENSGT00950000183104.B.a.b.a.a.a	ENSGT00720000108823.i	ENSGT00940000164500.a.e	ENSGT00950000183103.d.b.a.a.a.a	ENSGT00940000153487.b.a.s.b.c #22	ENSGT00940000157036.e.b.a	ENSGT00950000183005.b.a.e	ENSGT00940000162613.g	ENSGT00940000161905.b	ENSGT00940000159179.g.c	ENSGT00940000154662.d.l.b.a #25	ENSGT00940000159261.d.b #21	ENSGT00940000160088.c #20	ENSGT00940000164811.a.b.b.d	ENSGT00950000183102.B.e ##36	ENSGT00530000063841.b.b #13	ENSGT00940000154737.c.g.c #11	ENSGT00940000164939.a.b.c	ENSGT01040000240444.A.b.a.b.g.a	ENSGT00940000159170.d.c
River trout	MODERN SPECIES	24	rnf114 (ENSSTUG00000014796)	ENSSTUG00000014803	mafba (ENSSTUG00000014810)	zhx3b (ENSSTUG00000014823)	ENSSTUG00000014850	ENSSTUG00000015186	stk11 (ENSSTUG00000015207)	SUGP1 (ENSSTUG00000015272)	rnf126 (ENSSTUG00000015294)	ENSSTUG00000015315	ENSSTUG00000015383	ENSSTUG00000015393	fzr1a (ENSSTUG00000015478)	sf3a2 (ENSSTUG00000016194)	ENSSTUG00000016203	map2k2b (ENSSTUG00000016240) #22	tcf3a (ENSSTUG00000016901)	mbd3a (ENSSTUG00000017305)	MEX3D (ENSSTUG00000017314)	UNC13A (ENSSTUG00000017341)	BTBD2 (ENSSTUG00000018179)	eef2b (ENSSTUG00000018799) #25	ENSSTUG00000019080 #21	sirt6 (ENSSTUG00000019106) #20	ENSSTUG00000019210	cactin (ENSSTUG00000019247) ##36	stap2a (ENSSTUG00000019274) #13	sh3gl1a (ENSSTUG00000019324) #11	rorcb (ENSSTUG00000019392)	ENSSTUG00000019414	SEMA6B (ENSSTUG00000019423)
Atlantic salmon	MODERN SPECIES	22	ENSSSAG00000049450	ENSSSAG00000081335	ENSSSAG00000101882	ENSSSAG00000081329	ENSSSAG00000081319	ENSSSAG00000085746	ENSSSAG00000081313	ENSSSAG00000090795	ENSSSAG00000093405	ENSSSAG00000081306	ENSSSAG00000090503	ENSSSAG00000080501	sf3a2 (ENSSSAG00000081251)	ENSSSAG00000081250	ENSSSAG00000081249	map2k2b (ENSSSAG00000081195) #22	tcf3a (ENSSSAG00000081096)	ENSSSAG00000102781	mbd3 (ENSSSAG00000081084)	MEX3D (ENSSSAG00000120967)	ENSSSAG00000080968	ENSSSAG00000080898	eef2b (ENSSSAG00000080848) #25	ENSSSAG00000080834 #21	ENSSSAG00000080789 #20	ub2r1 (ENSSSAG00000080773)	cactin (ENSSSAG00000080761) ##36	stap2a (ENSSSAG00000105995) #13	sh3gl1a (ENSSSAG00000080730) #11	rorcb (ENSSSAG00000080721)	ENSSSAG00000080711
Huchen	MODERN SPECIES	1253													sf3a2 (ENSHHUG00000024585)	ENSHHUG00000024582	ENSHHUG00000024579	map2k2b (ENSHHUG00000024185) #22	tcf3a (ENSHHUG00000024103)	mbd3a (ENSHHUG00000024096)	MEX3D (ENSHHUG00000024092)	ENSHHUG00000023501	cbln10 (ENSHHUG00000023478)	BTBD2 (ENSHHUG00000023424)	eef2b (ENSHHUG00000023418) #25
Salmoninae	ANCESTRAL SPECIES	239	ENSGT00510000049027.d	ENSGT00390000009230.b.e	ENSGT00940000158050.h.a.a	ENSGT00410000025695.a.d	ENSGT00940000157113.d.h	ENSGT00940000156523.b.d.d	ENSGT00950000182925.C.a.a.c.b	ENSGT00940000162487.s.a	ENSGT00950000182925.C.a.a.d	ENSGT00950000183104.B.a.b.a.a.b	ENSGT00390000005235	ENSGT00720000108823.j	ENSGT00940000164500.a.f	ENSGT00950000183103.d.b.a.a.a.b	ENSGT01030000234539.a.a.a.e #24	ENSGT00940000153487.b.a.s.b.d #22	ENSGT00940000157036.e.b.b	ENSGT01000000214836	ENSGT00950000183005.b.a.f	ENSGT00940000162613.h	ENSGT00940000154929.B.h
Huchen	MODERN SPECIES	1889													ENSHHUG00000022988	ENSHHUG00000022992	pias4b (ENSHHUG00000023007) #24	map2k2b (ENSHHUG00000023032) #22	tcf3a (ENSHHUG00000023302)	ENSHHUG00000023451	mbd3a (ENSHHUG00000023467)	MEX3D (ENSHHUG00000023474)	ENSHHUG00000023491
Salmoninae_a	ANCESTRAL SPECIES	51	ENSGT01030000234567.B.a.a.b.b.a.a.b	ENSGT00510000049027.d	ENSGT00390000009230.b.e	ENSGT00940000158050.h.a.a	ENSGT00410000025695.a.d	ENSGT00940000157113.d.h	ENSGT00940000156523.b.d.d	ENSGT00950000182925.C.a.a.c.b	ENSGT00940000162487.s.a	ENSGT00950000183104.B.a.b.a.a.b	ENSGT00390000005235	ENSGT00720000108823.j	ENSGT00940000164500.a.f	ENSGT00950000183103.d.b.a.a.a.b	ENSGT01030000234539.a.a.a.e #24	ENSGT00940000153487.b.a.s.b.d #22	ENSGT00940000157036.e.b.b	ENSGT01000000214836	ENSGT00950000183005.b.a.f	ENSGT00940000162613.h	ENSGT00940000154929.B.h
Salmo	ANCESTRAL SPECIES	21	ENSGT01030000234567.B.a.a.b.b.a.a.b	ENSGT00510000049027.d	ENSGT00390000009230.b.e	ENSGT00940000158050.h.a.a	ENSGT00410000025695.a.d	ENSGT00940000157113.d.h	ENSGT00940000156523.b.d.d	ENSGT00950000182925.C.a.a.c.b	ENSGT00940000162487.s.a	ENSGT00950000183104.B.a.b.a.a.b	ENSGT00390000005235	ENSGT00720000108823.j	ENSGT00940000164500.a.f	ENSGT00950000183103.d.b.a.a.a.b	ENSGT01030000234539.a.a.a.e #24	ENSGT00940000153487.b.a.s.b.d #22	ENSGT00940000157036.e.b.b	ENSGT01000000214836	ENSGT00950000183005.b.a.f	ENSGT00940000162613.h	ENSGT00940000154929.B.h	ENSGT00940000159179.g.d	ENSGT00940000154662.d.l.b.b #25	ENSGT01030000234518.B.a.a.d	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088.d #20	ENSGT00940000164811.a.b.b.c	ENSGT00950000183102.B.f ##36	ENSGT00940000165656	ENSGT00940000154737.c.g.d #11	ENSGT00940000164939.a.b.d
Atlantic salmon	MODERN SPECIES	5	ENSSSAG00000119558	ENSSSAG00000080551	ENSSSAG00000085793	stk11 (ENSSSAG00000094770)	ENSSSAG00000080535	ENSSSAG00000080530	ENSSSAG00000080520	ENSSSAG00000080517	ENSSSAG00000081269	plekhj1 (ENSSSAG00000087805)	sf3a2 (ENSSSAG00000080497)	ENSSSAG00000080494	ENSSSAG00000098495	onecut3 (ENSSSAG00000080491)	pias4b (ENSSSAG00000080484) #24	map2k2b (ENSSSAG00000110636) #22	tcf3 (ENSSSAG00000080422)	ENSSSAG00000114488	QCR10 (ENSSSAG00000080419)	ENSSSAG00000080413	mbd3a (ENSSSAG00000080410)	MEX3D (ENSSSAG00000080408)	ENSSSAG00000085886	ENSSSAG00000113276	ENSSSAG00000102159	EF2 (ENSSSAG00000079662) #25	ENSSSAG00000079652	ENSSSAG00000079649 #20	ENSSSAG00000063987	cactin (ENSSSAG00000079631) ##36	sema4e (ENSSSAG00000079614)
River trout	MODERN SPECIES	13	ENSSTUG00000042522	ENSSTUG00000042472	ENSSTUG00000042453	stk11 (ENSSTUG00000042429)	ENSSTUG00000042288	rnf126 (ENSSTUG00000042229)	ENSSTUG00000042201	ENSSTUG00000042172	ENSSTUG00000042146	fzr1a (ENSSTUG00000041577)	plekhj1 (ENSSTUG00000041529)	sf3a2 (ENSSTUG00000041509)	ENSSTUG00000041459	ENSSTUG00000041450	pias4b (ENSSTUG00000041412) #24	map2k2b (ENSSTUG00000040895) #22	tcf3a (ENSSTUG00000040504)	ENSSTUG00000040487	mbd3a (ENSSTUG00000040441)	MEX3D (ENSSTUG00000040434)	BTBD2 (ENSSTUG00000040152)	eef2b (ENSSTUG00000040026) #25	ENSSTUG00000040011	sirt6 (ENSSTUG00000039934) #20	ENSSTUG00000039921	cactin (ENSSTUG00000039909) ##36	ENSSTUG00000039902	sema4e (ENSSTUG00000039817)	sh3gl1a (ENSSTUG00000039762) #11	rorcb (ENSSTUG00000039738)	ENSSTUG00000039730
Oncorhynchus	ANCESTRAL SPECIES	46	ENSGT01030000234567.B.a.a.b.b.a.a.b	ENSGT00510000049027.d	ENSGT00390000009230.b.e	ENSGT00940000158050.h.a.a	ENSGT00410000025695.a.d	ENSGT00940000157113.d.h	ENSGT00940000156523.b.d.d	ENSGT00950000182925.C.a.a.c.b	ENSGT00940000162487.s.a	ENSGT00950000183104.B.a.b.a.a.b	ENSGT00390000005235	ENSGT00720000108823.j	ENSGT00940000164500.a.f	ENSGT00950000183103.d.b.a.a.a.b	ENSGT01030000234539.a.a.a.e #24	ENSGT00940000153487.b.a.s.b.d #22	ENSGT00940000157036.e.b.b	ENSGT01000000214836	ENSGT00950000183005.b.a.f	ENSGT00940000162613.h	ENSGT00940000154929.B.h
Oncorhynchus_a	ANCESTRAL SPECIES	56	ENSGT01030000234567.B.a.a.b.b.a.a.b	ENSGT00510000049027.d	ENSGT00390000009230.b.e	ENSGT00940000158050.h.a.a	ENSGT00410000025695.a.d	ENSGT00940000157113.d.h	ENSGT00940000156523.b.d.d	ENSGT00950000182925.C.a.a.c.b	ENSGT00940000162487.s.a	ENSGT00950000183104.B.a.b.a.a.b	ENSGT00390000005235	ENSGT00720000108823.j	ENSGT00940000164500.a.f	ENSGT00950000183103.d.b.a.a.a.b	ENSGT01030000234539.a.a.a.e #24	ENSGT00940000153487.b.a.s.b.d #22	ENSGT00940000157036.e.b.b	ENSGT01000000214836	ENSGT00950000183005.b.a.f	ENSGT00940000162613.h
Coho salmon	MODERN SPECIES	23	ENSOKIG00005024217	ENSOKIG00005024199	ENSOKIG00005024194	stk11 (ENSOKIG00005050234)	SUGP1 (ENSOKIG00005050228)	RNF126 (ENSOKIG00005050226)	ENSOKIG00005050223	ENSOKIG00005050221	ENSOKIG00005050216	ENSOKIG00005050205	plekhj1 (ENSOKIG00005050200)	sf3a2 (ENSOKIG00005050196)	ENSOKIG00005050194	ENSOKIG00005050191	pias4b (ENSOKIG00005050185) #24	map2k2b (ENSOKIG00005050173) #22	tcf3a (ENSOKIG00005050153)	ENSOKIG00005050138	mbd3a (ENSOKIG00005050135)	MEX3D (ENSOKIG00005050133)	UNC13A (ENSOKIG00005050044)	BTBD2 (ENSOKIG00005050006)	eef2b (ENSOKIG00005049981) #25	RXFP3 (ENSOKIG00005049961)	ENSOKIG00005049958	cactin (ENSOKIG00005049952) ##36	sema4e (ENSOKIG00005049934)	sh3gl1a (ENSOKIG00005049928) #11	ENSOKIG00005049922	ENSOKIG00005049920	ENSOKIG00005049919
Chinook salmon	MODERN SPECIES	492																map2k2b (ENSOTSG00005046079) #22	tcf3a (ENSOTSG00005046078)	UQCR11 (ENSOTSG00005046077)	mbd3a (ENSOTSG00005046046)	MEX3D (ENSOTSG00005046042)
Rainbow trout	MODERN SPECIES	29	ENSOMYG00000025552	ENSOMYG00000025525	stk11 (ENSOMYG00000025490)	ENSOMYG00000025369	ENSOMYG00000025305	ENSOMYG00000054246	ENSOMYG00000019717	ENSOMYG00000075756	ENSOMYG00000019145	plekhj1 (ENSOMYG00000019086)	sf3a2 (ENSOMYG00000019075)	ENSOMYG00000056264	ENSOMYG00000019056	ENSOMYG00000019049	pias4b (ENSOMYG00000019044) #24	map2k2b (ENSOMYG00000019038) #22	tcf3a (ENSOMYG00000019014)	UQCR11 (ENSOMYG00000019001)	ENSOMYG00000052459	mbd3a (ENSOMYG00000018993)	MEX3D (ENSOMYG00000018976)	ENSOMYG00000075676	ENSOMYG00000018794	eef2b (ENSOMYG00000018631) #25	ENSOMYG00000072890	ENSOMYG00000018556	cactin (ENSOMYG00000018504) ##36	sema4e (ENSOMYG00000018449)	sh3gl1a (ENSOMYG00000027559) #11	ENSOMYG00000077132	ENSOMYG00000060880
Northern pike	MODERN SPECIES	2	ENSELUG00000009851	ENSELUG00000009593	ENSELUG00000008730	ENSELUG00000008714	stk11 (ENSELUG00000008700)	SUGP1 (ENSELUG00000001358)	rnf126 (ENSELUG00000008634)	ENSELUG00000008591	ENSELUG00000008562	fzr1a (ENSELUG00000008541)	plekhj1 (ENSELUG00000008500)	sf3a2 (ENSELUG00000008471)	ENSELUG00000000313	ENSELUG00000000310	ENSELUG00000008421	map2k2b (ENSELUG00000008388) #22	tcf3a (ENSELUG00000008346)	ENSELUG00000029955	ENSELUG00000008293	mbd3a (ENSELUG00000008232)	MEX3D (ENSELUG00000008214)	UNC13A (ENSELUG00000008193)	ENSELUG00000008151	BTBD2 (ENSELUG00000008136)	eef2b (ENSELUG00000008109) #25	ENSELUG00000008076 #21	ENSELUG00000008052	sirt6 (ENSELUG00000008030) #20	cdc34b (ENSELUG00000008006)	cactin (ENSELUG00000007984) ##36	sema4e (ENSELUG00000001612)
Acanthomorphata	ANCESTRAL SPECIES		ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235	ENSGT00720000108823	ENSGT00410000028808	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a	ENSGT00940000157036.f	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b #22	ENSGT00940000157036.e.b	ENSGT00390000018299	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000159179.g	ENSGT00940000154662.d #25	ENSGT00940000159261.d.b #21	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088 #20	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B ##36	ENSGT00940000165656	ENSGT00530000063841.b.b #13	ENSGT00940000154737.c.g #11
Euacanthomorphacea	ANCESTRAL SPECIES	4	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235	ENSGT00720000108823	ENSGT00410000028808	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a	ENSGT00940000157036.f	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b #22	ENSGT00940000157036.e.b	ENSGT00390000018299	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000159179.g	ENSGT00940000154662.d #25	ENSGT00940000159261.d.b #21	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088 #20	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B ##36	ENSGT00940000165656	ENSGT00530000063841.b.b #13	ENSGT00940000154737.c.g #11
Percomorphaceae	ANCESTRAL SPECIES	6	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235	ENSGT00720000108823	ENSGT00410000028808	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a	ENSGT00940000157036.f	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b #22	ENSGT00940000157036.e.b	ENSGT00390000018299	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000159179.g	ENSGT00940000154662.d #25	ENSGT00940000159261.d.b #21	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088 #20	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B ##36	ENSGT00940000165656	ENSGT00530000063841.b.b #13	ENSGT00940000154737.c.g #11
Percomorphaceae_B	ANCESTRAL SPECIES	8	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235	ENSGT00720000108823	ENSGT00410000028808	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b #22	ENSGT00940000157036.e.b	ENSGT00390000018299	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000154929.C	ENSGT00940000159179.g	ENSGT00940000154662.d #25	ENSGT00940000159261.d.b #21	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088 #20	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B ##36	ENSGT00940000165656	ENSGT00530000063841.b.b #13
Percomorphaceae_C	ANCESTRAL SPECIES	6	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235	ENSGT00720000108823	ENSGT00410000028808	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b #22	ENSGT00940000157036.e.b	ENSGT00390000018299	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000154929.C	ENSGT00940000159179.g	ENSGT00940000154662.d #25	ENSGT00940000159261.d.b #21	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088 #20	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B ##36	ENSGT00940000165656	ENSGT00530000063841.b.b #13
Percomorphaceae_D	ANCESTRAL SPECIES	6	ENSGT00390000000719	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b #22	ENSGT00940000157036.e.b	ENSGT00390000018299	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000159179.g	ENSGT00940000154662.d #25	ENSGT00940000159261.d.b #21	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088 #20	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B ##36	ENSGT00940000165656	ENSGT00530000063841.b.b #13	ENSGT00940000154737.c.g #11
Anabantaria	ANCESTRAL SPECIES	8	ENSGT00390000004097.a.f	ENSGT00390000000719	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a	ENSGT00940000153487.b.a.s.b #22	ENSGT00940000157036.e.b	ENSGT00390000018299	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000159179.g	ENSGT00940000154662.d #25	ENSGT00940000159261.d.b #21	ENSGT01030000234518.B.a.a.d	ENSGT00940000160088 #20	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B ##36	ENSGT00940000165656	ENSGT00530000063841.b.b #13	ENSGT00940000154737.c.g #11
Zig-zag eel	MODERN SPECIES	8	MAU2 (ENSMAMG00000010226)	ENSMAMG00000010196	NDUFA13 (ENSMAMG00000010191)	ENSMAMG00000010168	ENSMAMG00000010150	ENSMAMG00000010112	ENSMAMG00000010087	ENSMAMG00000010022	ENSMAMG00000009996	ENSMAMG00000009954	ENSMAMG00000009939	ENSMAMG00000009897	sf3a2 (ENSMAMG00000009881)	ENSMAMG00000009806	ONECUT3 (ENSMAMG00000009776)	map2k2b (ENSMAMG00000009747) #22	tcf3a (ENSMAMG00000009676)	ENSMAMG00000009650	mbd3a (ENSMAMG00000009631)	MEX3D (ENSMAMG00000009575)	ENSMAMG00000009493	ENSMAMG00000009448	eef2b (ENSMAMG00000009410) #25	ENSMAMG00000009384	ENSMAMG00000028658 #20	ENSMAMG00000009339	cactin (ENSMAMG00000009327) ##36	sema4e (ENSMAMG00000009285)	stap2a (ENSMAMG00000009267) #13	sh3gl1a (ENSMAMG00000009226) #11	rorcb (ENSMAMG00000009175)
Anabantoidei	ANCESTRAL SPECIES	18	ENSGT00390000004097.a.f	ENSGT00390000000719	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a	ENSGT00940000153487.b.a.s.b #22	ENSGT00940000157036.e.b	ENSGT00390000018299	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000159179.g	ENSGT00940000154662.d #25	ENSGT00940000159261.d.b #21	ENSGT01030000234518.B.a.a.d	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088 #20	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B ##36	ENSGT00940000165656	ENSGT00530000063841.b.b #13
Climbing perch	MODERN SPECIES	8	ENSATEG00000014918	NDUFA13 (ENSATEG00000014957)	ENSATEG00000026515	ENSATEG00000015018	ENSATEG00000027548	ENSATEG00000015056	ENSATEG00000015089	ENSATEG00000015159	ENSATEG00000015205	ENSATEG00000015349	ENSATEG00000015362	plekhj1 (ENSATEG00000015419)	sf3a2 (ENSATEG00000015449)	ENSATEG00000015455	ONECUT3 (ENSATEG00000015466)	map2k2b (ENSATEG00000015486) #22	tcf3a (ENSATEG00000015526)	UQCR11 (ENSATEG00000029685)	mbd3a (ENSATEG00000015604)	MEX3D (ENSATEG00000015620)	ENSATEG00000015705	ENSATEG00000015797	eef2b (ENSATEG00000015820) #25	ENSATEG00000015848	ENSATEG00000015870 #20	ENSATEG00000015911	cactin (ENSATEG00000015933) ##36	sema4e (ENSATEG00000016033)	stap2a (ENSATEG00000016062) #13	sh3gl1a (ENSATEG00000016098) #11	rorcb (ENSATEG00000016141)
Siamese fighting fish	MODERN SPECIES	8	prg4a (ENSBSLG00000024773)	odr4 (ENSBSLG00000024872)	dpydb (ENSBSLG00000024910)	ENSBSLG00000025384	ENSBSLG00000025402	stk11 (ENSBSLG00000025416)	SUGP1 (ENSBSLG00000025481)	rnf126 (ENSBSLG00000025588)	ENSBSLG00000025594	ENSBSLG00000025614	fzr1a (ENSBSLG00000025629)	plekhj1 (ENSBSLG00000025663)	sf3a2 (ENSBSLG00000025671)	ENSBSLG00000025674	ONECUT3 (ENSBSLG00000025676)	map2k2b (ENSBSLG00000004962) #22	tcf3a (ENSBSLG00000005655)	UQCR11 (ENSBSLG00000005816)	mbd3a (ENSBSLG00000005818)	MEX3D (ENSBSLG00000005827)	UNC13A (ENSBSLG00000007074)	BTBD2 (ENSBSLG00000011004)	eef2b (ENSBSLG00000011206) #25	ENSBSLG00000011288 #21	ENSBSLG00000011298	sirt6 (ENSBSLG00000011309) #20	cdc34b (ENSBSLG00000011413)	cactin (ENSBSLG00000011429) ##36	sema4e (ENSBSLG00000011432)	stap2a (ENSBSLG00000011436) #13	sh3gl1a (ENSBSLG00000011800) #11
Carangaria	ANCESTRAL SPECIES	5	ENSGT00390000000719	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b #22	ENSGT00940000157036.e.b	ENSGT00390000018299	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000159179.g	ENSGT00940000154662.d #25	ENSGT00940000159261.d.b #21	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088 #20	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B ##36	ENSGT00940000165656	ENSGT00530000063841.b.b #13	ENSGT00940000154737.c.g #11
Carangaria_A	ANCESTRAL SPECIES	2	ENSGT00390000000719	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b #22	ENSGT00940000157036.e.b	ENSGT01000000214836	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000159179.g	ENSGT00940000154662.d #25	ENSGT00940000159261.d.b #21	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088 #20	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B ##36	ENSGT00940000165656	ENSGT00530000063841.b.b #13	ENSGT00940000154737.c.g #11
Seriola	ANCESTRAL SPECIES		ENSGT00390000000719	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b #22	ENSGT00940000157036.e.b	ENSGT01000000214836	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000159179.g	ENSGT00940000154662.d #25	ENSGT00940000159261.d.b #21	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088 #20	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B ##36	ENSGT00940000165656	ENSGT00530000063841.b.b #13	ENSGT00940000154737.c.g #11
Yellowtail amberjack	MODERN SPECIES	2574	NDUFA13 (ENSSLDG00000011337)	cirbpa (ENSSLDG00000011320)	ENSSLDG00000011306	ENSSLDG00000011275	stk11 (ENSSLDG00000011238)	SUGP1 (ENSSLDG00000011109)	rnf126 (ENSSLDG00000011057)	ENSSLDG00000011003	ENSSLDG00000010978	fzr1a (ENSSLDG00000010925)	plekhj1 (ENSSLDG00000010898)	sf3a2 (ENSSLDG00000010874)	ENSSLDG00000010855	ENSSLDG00000010824	ENSSLDG00000010623	map2k2b (ENSSLDG00000010536) #22	tcf3a (ENSSLDG00000010354)	ENSSLDG00000010298	mbd3a (ENSSLDG00000010277)	MEX3D (ENSSLDG00000010251)
Greater amberjack	MODERN SPECIES	83	NDUFA13 (ENSSDUG00000016119)	cirbpa (ENSSDUG00000016099)	ENSSDUG00000016081	ENSSDUG00000016066	stk11 (ENSSDUG00000016044)	SUGP1 (ENSSDUG00000016002)	rnf126 (ENSSDUG00000015961)	ENSSDUG00000015921	ENSSDUG00000015903	fzr1a (ENSSDUG00000015856)	plekhj1 (ENSSDUG00000015836)	sf3a2 (ENSSDUG00000015810)	ENSSDUG00000015791	ENSSDUG00000015775	ENSSDUG00000015751	map2k2b (ENSSDUG00000015722) #22	tcf3a (ENSSDUG00000015626)	ENSSDUG00000015612	mbd3a (ENSSDUG00000015576)	MEX3D (ENSSDUG00000015559)	UNC13A (ENSSDUG00000015480)	BTBD2 (ENSSDUG00000015452)	eef2b (ENSSDUG00000015383) #25	ENSSDUG00000015370	sirt6 (ENSSDUG00000015343) #20	cdc34b (ENSSDUG00000015320)	cactin (ENSSDUG00000015266) ##36	sema4e (ENSSDUG00000015240)	stap2a (ENSSDUG00000015219) #13	sh3gl1a (ENSSDUG00000015186) #11	rorcb (ENSSDUG00000015136)
Barramundi perch	MODERN SPECIES	69	NDUFA13 (ENSLCAG00010016224)	cirbpa (ENSLCAG00010016235)	ENSLCAG00010016241	ENSLCAG00010016246	stk11 (ENSLCAG00010016248)	SUGP1 (ENSLCAG00010016250)	rnf126 (ENSLCAG00010016255)	ENSLCAG00010016259	ENSLCAG00010016262	fzr1a (ENSLCAG00010016290)	plekhj1 (ENSLCAG00010016474)	sf3a2 (ENSLCAG00010016478)	ENSLCAG00010016483	ENSLCAG00010016486	ENSLCAG00010016490	map2k2b (ENSLCAG00010016500) #22	tcf3a (ENSLCAG00010016519)	ENSLCAG00010016533	mbd3a (ENSLCAG00010016536)	MEX3D (ENSLCAG00010016541)	UNC13A (ENSLCAG00010016701)	BTBD2 (ENSLCAG00010017348)	eef2b (ENSLCAG00010017398) #25	ENSLCAG00010017809 #21	ENSLCAG00010017819	sirt6 (ENSLCAG00010017822) #20	cdc34b (ENSLCAG00010017831)	cactin (ENSLCAG00010017844) ##36	sema4e (ENSLCAG00010017856)	stap2a (ENSLCAG00010017883) #13	sh3gl1a (ENSLCAG00010017885) #11
Pleuronectoidei	ANCESTRAL SPECIES	1	ENSGT00390000000719	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b #22	ENSGT00940000157036.e.b	ENSGT00390000018299	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000159179.g	ENSGT00940000154662.d #25	ENSGT00940000159261.d.b #21	ENSGT01030000234518.B.a.a.d	ENSGT00940000160088 #20	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B ##36	ENSGT00940000165656	ENSGT00530000063841.b.b #13	ENSGT00940000154737.c.g #11
Turbot	MODERN SPECIES	19	ENSSMAG00000002301	ENSSMAG00000002373	ENSSMAG00000002412	ENSSMAG00000002439	ENSSMAG00000002450	ENSSMAG00000002464	ENSSMAG00000002495	ENSSMAG00000002519	ENSSMAG00000002539	ENSSMAG00000031477	ENSSMAG00000002573	sf3a2 (ENSSMAG00000027073)	ENSSMAG00000002644	ENSSMAG00000002648	ENSSMAG00000002680	map2k2b (ENSSMAG00000002878) #22	tcf3a (ENSSMAG00000002954)	UQCR11 (ENSSMAG00000003012)	mbd3a (ENSSMAG00000003031)	MEX3D (ENSSMAG00000003087)	ENSSMAG00000003126	ENSSMAG00000003277	eef2b (ENSSMAG00000003334) #25	ENSSMAG00000003391 #21	ENSSMAG00000003407	ENSSMAG00000003421 #20	ENSSMAG00000003468	cactin (ENSSMAG00000003498) ##36	sema4e (ENSSMAG00000003518)	stap2a (ENSSMAG00000003544) #13	ENSSMAG00000025205 #11
Eupercaria	ANCESTRAL SPECIES	22	ENSGT00940000165622.f	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235	ENSGT00720000108823	ENSGT00410000028808	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b #22	ENSGT00940000157036.e.b	ENSGT00390000018299	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000154929.C	ENSGT00940000159179.g	ENSGT00940000154662.d #25	ENSGT00940000159261.d.b #21	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088 #20	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B ##36	ENSGT00940000165656	ENSGT00530000063841.b.b #13
Eupecaria_A	ANCESTRAL SPECIES	8	ENSGT00390000000719	ENSGT00940000165622.f	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b #22	ENSGT00940000157036.e.b	ENSGT00390000018299	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000154929.C	ENSGT00940000159179.g	ENSGT00940000154662.d #25	ENSGT00940000159261.d.b #21	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088 #20	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B ##36	ENSGT00940000165656	ENSGT00530000063841.b.b #13
Ballan wrasse	MODERN SPECIES	63	cirbpa (ENSLBEG00000000292)	ENSLBEG00000000316	ENSLBEG00000000323	stk11 (ENSLBEG00000000328)	SUGP1 (ENSLBEG00000000335)	rnf126 (ENSLBEG00000000394)	ENSLBEG00000000459	ENSLBEG00000000513	fzr1a (ENSLBEG00000000585)	plekhj1 (ENSLBEG00000000642)	sf3a2 (ENSLBEG00000000677)	ENSLBEG00000000719	ENSLBEG00000000734	ENSLBEG00000000750	ENSLBEG00000000761	map2k2b (ENSLBEG00000000771) #22	tcf3a (ENSLBEG00000000838)	ENSLBEG00000000943	mbd3a (ENSLBEG00000000961)	MEX3D (ENSLBEG00000000974)	UNC13A (ENSLBEG00000001037)	BTBD2 (ENSLBEG00000001142)	eef2b (ENSLBEG00000001176) #25	ENSLBEG00000001250 #21	ENSLBEG00000001274	sirt6 (ENSLBEG00000001292) #20	cdc34b (ENSLBEG00000001317)	cactin (ENSLBEG00000001359) ##36	sema4e (ENSLBEG00000001394)	stap2a (ENSLBEG00000001413) #13	sh3gl1a (ENSLBEG00000001422) #11
Eupecaria_B	ANCESTRAL SPECIES	8	ENSGT00390000000719	ENSGT00940000165622.e	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b #22	ENSGT00940000157036.e.b	ENSGT00390000018299	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000154929.C	ENSGT00940000159179.g	ENSGT00940000154662.d #25	ENSGT00940000159261.d.b #21	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088 #20	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B ##36	ENSGT00940000165656	ENSGT00530000063841.b.b #13
Perciformes	ANCESTRAL SPECIES	5	ENSGT00390000000719	ENSGT00940000165622.e.a.a	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b #22	ENSGT00940000157036.e.b	ENSGT01000000214836	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000154929.C	ENSGT00940000159179.g	ENSGT00940000154662.d #25	ENSGT00940000159261.d.b #21	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088 #20	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B ##36	ENSGT00940000165656	ENSGT00530000063841.b.b #13
Perciformes_a	ANCESTRAL SPECIES	17	ENSGT00390000000719	ENSGT00940000165622.e.b	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b #22	ENSGT00940000157036.e.b	ENSGT01000000214836	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000159179.g	ENSGT00940000154662.d #25	ENSGT00940000159261.d.b #21	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088 #20	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B ##36	ENSGT00940000165656	ENSGT00530000063841.b.b #13	ENSGT00940000154737.c.g #11
Channel bull blenny	MODERN SPECIES	8	NDUFA13 (ENSCGOG00000011572)	cirbpa (ENSCGOG00000011580)	ENSCGOG00000011585	ENSCGOG00000011587	stk11 (ENSCGOG00000011588)	SUGP1 (ENSCGOG00000011646)	rnf126 (ENSCGOG00000011710)	ENSCGOG00000011782	ENSCGOG00000011788	fzr1a (ENSCGOG00000011798)	plekhj1 (ENSCGOG00000012289)	sf3a2 (ENSCGOG00000012305)	ENSCGOG00000012340	ENSCGOG00000012345	ENSCGOG00000012348	map2k2b (ENSCGOG00000012380) #22	tcf3a (ENSCGOG00000013317)	ENSCGOG00000013325	mbd3a (ENSCGOG00000013327)	MEX3D (ENSCGOG00000013329)	UNC13A (ENSCGOG00000013383)	BTBD2 (ENSCGOG00000016013)	eef2b (ENSCGOG00000016161) #25	RXFP3 (ENSCGOG00000016486)	sirt6 (ENSCGOG00000016503) #20	cdc34b (ENSCGOG00000016747)	cactin (ENSCGOG00000016766) ##36	sema4e (ENSCGOG00000016781)	stap2a (ENSCGOG00000016839) #13	sh3gl1a (ENSCGOG00000016844) #11	rorcb (ENSCGOG00000016857)
Pike perch	MODERN SPECIES	55	NDUFA13 (ENSSLUG00000002790)	ENSSLUG00000002796	ENSSLUG00000002806	ENSSLUG00000002816	stk11 (ENSSLUG00000002824)	SUGP1 (ENSSLUG00000002833)	rnf126 (ENSSLUG00000002851)	ENSSLUG00000002863	ENSSLUG00000002883	fzr1a (ENSSLUG00000002951)	plekhj1 (ENSSLUG00000003469)	sf3a2 (ENSSLUG00000003480)	ENSSLUG00000003493	ENSSLUG00000003505	ENSSLUG00000003577	map2k2b (ENSSLUG00000003610) #22	tcf3a (ENSSLUG00000003689)	ENSSLUG00000003703	mbd3a (ENSSLUG00000003717)	MEX3D (ENSSLUG00000003737)	UNC13A (ENSSLUG00000004076)	BTBD2 (ENSSLUG00000009938)	eef2b (ENSSLUG00000009959) #25	ENSSLUG00000009985 #21	sirt6 (ENSSLUG00000010006) #20	ENSSLUG00000010036	cdc34b (ENSSLUG00000010043)	cactin (ENSSLUG00000010052) ##36	sema4e (ENSSLUG00000010059)	stap2a (ENSSLUG00000010072) #13	sh3gl1a (ENSSLUG00000010082) #11
Cottioidei	ANCESTRAL SPECIES	15	ENSGT00390000004097.a.f	ENSGT00390000000719	ENSGT00940000165622.e.a.a	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a	ENSGT00940000153487.b.a.s.b #22	ENSGT00940000157036.e.b	ENSGT01000000214836	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000154929.C	ENSGT00940000159179.g	ENSGT00940000154662.d #25	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088 #20	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B ##36	ENSGT00940000165656	ENSGT00530000063841.b.b #13	ENSGT00940000154737.c.g #11
Stickleback	MODERN SPECIES	2	NDUFA13 (ENSGACG00000015203)	cirbpa (ENSGACG00000015206)	ENSGACG00000015211	stk11 (ENSGACG00000015219)	SUGP1 (ENSGACG00000015222)	rnf126 (ENSGACG00000015225)	ENSGACG00000015230	ENSGACG00000015231	fzr1a (ENSGACG00000015236)	plekhj1 (ENSGACG00000015244)	sf3a2 (ENSGACG00000015255)	ENSGACG00000015265	zp3f.1 (ENSGACG00000015267)	ENSGACG00000015271	ONECUT3 (ENSGACG00000015272)	map2k2b (ENSGACG00000015273) #22	tcf3a (ENSGACG00000015282)	mbd3a (ENSGACG00000015296)	MEX3D (ENSGACG00000015299)	UNC13A (ENSGACG00000015301)	BTBD2 (ENSGACG00000015306)	eef2b (ENSGACG00000015308) #25	ENSGACG00000015315	sirt6 (ENSGACG00000015316) #20	cdc34b (ENSGACG00000015317)	cactin (ENSGACG00000015324) ##36	sema4e (ENSGACG00000015326)	stap2a (ENSGACG00000015332) #13	sh3gl1a (ENSGACG00000015335) #11	rorcb (ENSGACG00000015341)	ENSGACG00000015344
Lumpfish	MODERN SPECIES	8	ENSCLMG00005006433	NDUFA13 (ENSCLMG00005006434)	ENSCLMG00005006435	ENSCLMG00005006436	CBARP (ENSCLMG00005006437)	stk11 (ENSCLMG00005006438)	SUGP1 (ENSCLMG00005006439)	RNF126 (ENSCLMG00005006440)	ENSCLMG00005006441	ENSCLMG00005006443	ENSCLMG00005006444	plekhj1 (ENSCLMG00005006721)	sf3a2 (ENSCLMG00005006722)	ENSCLMG00005006724	ONECUT3 (ENSCLMG00005006726)	map2k2b (ENSCLMG00005006730) #22	tcf3a (ENSCLMG00005007129)	ENSCLMG00005007130	mbd3a (ENSCLMG00005007131)	MEX3D (ENSCLMG00005007132)	UNC13A (ENSCLMG00005007134)	ENSCLMG00005007135	BTBD2 (ENSCLMG00005007136)	eef2b (ENSCLMG00005007360) #25	ENSCLMG00005007362	sirt6 (ENSCLMG00005007368) #20	cdc34b (ENSCLMG00005007372)	cactin (ENSCLMG00005007374) ##36	sema4e (ENSCLMG00005007375)	stap2a (ENSCLMG00005007377) #13	sh3gl1a (ENSCLMG00005007378) #11
Eupecaria_C	ANCESTRAL SPECIES	10	ENSGT00390000000719	ENSGT00940000165622.f	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b #22	ENSGT00940000157036.e.b	ENSGT00390000018299	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000159179.g	ENSGT00940000154662.d #25	ENSGT00940000159261.d.b #21	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088 #20	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B ##36	ENSGT00940000165656	ENSGT00530000063841.b.b #13	ENSGT00940000154737.c.g #11
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	8	ENSGT00390000000719	ENSGT00940000165622.f	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b #22	ENSGT00940000157036.e.b	ENSGT00390000018299	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000159179.g	ENSGT00940000154662.d #25	ENSGT00940000159261.d.b #21	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088 #20	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B ##36	ENSGT00940000165656	ENSGT00530000063841.b.b #13	ENSGT00940000154737.c.g #11
European seabass	MODERN SPECIES		MAU2 (ENSDLAG00005025001)	ENSDLAG00005024979	NDUFA13 (ENSDLAG00005026360)	ENSDLAG00005030125	ENSDLAG00005024964	ENSDLAG00005033484	ENSDLAG00005024937	ENSDLAG00005024934	ENSDLAG00005024908	ENSDLAG00005024905	ENSDLAG00005024891	sf3a2 (ENSDLAG00005024886)	ENSDLAG00005024881	ENSDLAG00005024879	ENSDLAG00005024878	map2k2b (ENSDLAG00005024852) #22	tcf3a (ENSDLAG00005027974)	ENSDLAG00005027551	ENSDLAG00005023147	ENSDLAG00005022958	eef2b (ENSDLAG00005022862) #25	ENSDLAG00005029144 #21	ENSDLAG00005022844	ENSDLAG00005022768 #20	ENSDLAG00005029825	cactin (ENSDLAG00005022749) ##36	sema4e (ENSDLAG00005022714)	sh3gl1a (ENSDLAG00005035038) #11	rorcb (ENSDLAG00005022683)	ENSDLAG00005029894	ENSDLAG00005022592
Large yellow croaker	MODERN SPECIES	483	ENSLCRG00005006021	NDUFA13 (ENSLCRG00005006023)	cirbpa (ENSLCRG00005006025)	ENSLCRG00005006026	ENSLCRG00005006032	stk11 (ENSLCRG00005006034)	SUGP1 (ENSLCRG00005006036)	ENSLCRG00005006038	ENSLCRG00005006049	ENSLCRG00005006138	fzr1a (ENSLCRG00005002589)	plekhj1 (ENSLCRG00005002930)	sf3a2 (ENSLCRG00005002933)	ENSLCRG00005002935	ONECUT3 (ENSLCRG00005002937)	map2k2b (ENSLCRG00005002947) #22	tcf3a (ENSLCRG00005003208)	ENSLCRG00005003230	UQCR11 (ENSLCRG00005003231)	mbd3a (ENSLCRG00005003234)	MEX3D (ENSLCRG00005003238)	UNC13A (ENSLCRG00005003340)	BTBD2 (ENSLCRG00005010807)	eef2b (ENSLCRG00005010825) #25	sirt6 (ENSLCRG00005011049) #20	ENSLCRG00005011056 #21	ENSLCRG00005011060	cdc34b (ENSLCRG00005011061)	cactin (ENSLCRG00005011063) ##36	sema4e (ENSLCRG00005011066)	stap2a (ENSLCRG00005011068) #13
Gilthead seabream	MODERN SPECIES	13	ENSSAUG00010017793	stk11 (ENSSAUG00010017794)	SUGP1 (ENSSAUG00010017796)	rnf126 (ENSSAUG00010017802)	ENSSAUG00010017804	ENSSAUG00010017855	fzr1a (ENSSAUG00010017865)	plekhj1 (ENSSAUG00010018092)	sf3a2 (ENSSAUG00010018096)	ENSSAUG00010018101	ENSSAUG00010018105	ENSSAUG00010018106	ENSSAUG00010018110	ENSSAUG00010018114	ENSSAUG00010018118	map2k2b (ENSSAUG00010018128) #22	tcf3a (ENSSAUG00010018157)	UQCR11-B (ENSSAUG00010018172)	mbd3a (ENSSAUG00010018178)	MEX3D (ENSSAUG00010018182)	UNC13A (ENSSAUG00010018200)	BTBD2 (ENSSAUG00010018336)	eef2b (ENSSAUG00010018444) #25	ENSSAUG00010018573 #21	ENSSAUG00010018574	sirt6 (ENSSAUG00010018575) #20	cdc34b (ENSSAUG00010018577)	cactin (ENSSAUG00010018579) ##36	sema4e (ENSSAUG00010018580)	stap2a (ENSSAUG00010018581) #13	sh3gl1a (ENSSAUG00010018582) #11
Ovalentaria	ANCESTRAL SPECIES	5	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235	ENSGT00720000108823	ENSGT00410000028808	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b #22	ENSGT00940000157036.e.b	ENSGT00390000018299	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000159179.g	ENSGT00940000154662.d #25	ENSGT00940000159261.d.b #21	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088 #20	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B ##36	ENSGT00940000165656	ENSGT00530000063841.b.b #13	ENSGT00940000154737.c.g #11
Ovalentaria_B	ANCESTRAL SPECIES	6	ENSGT00390000000719	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b #22	ENSGT00940000157036.e.b	ENSGT00390000018299	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000159179.g	ENSGT00940000154662.d #25	ENSGT00940000159261.d.b #21	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088 #20	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B ##36	ENSGT00940000165656	ENSGT00530000063841.b.b #13	ENSGT00940000154737.c.g #11
Pomacentridae	ANCESTRAL SPECIES	6	ENSGT00390000000719	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b #22	ENSGT00940000157036.e.b	ENSGT00390000018299	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000154929.C	ENSGT00940000159179.g	ENSGT00940000154662.d #25	ENSGT00940000159261.d.b #21	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT01030000234518.B.a.a.d	ENSGT00940000160088 #20	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B ##36	ENSGT00940000165656
Pomacentridae_A	ANCESTRAL SPECIES	18	ENSGT00390000000719	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b #22	ENSGT00940000157036.e.b	ENSGT00390000018299	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000159179.g	ENSGT00940000154662.d #25	ENSGT00940000159261.d.b #21	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT01030000234518.B.a.a.d	ENSGT00940000160088 #20	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B ##36	ENSGT00940000165656	ENSGT00530000063841.b.b #13
Amphiprion	ANCESTRAL SPECIES	48	ENSGT00390000000719	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b #22	ENSGT00940000157036.e.b	ENSGT00390000018299	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000159179.g	ENSGT00940000154662.d #25	ENSGT01030000234518.B.a.a.d	ENSGT00940000159261.d.b #21	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088 #20	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B ##36	ENSGT00940000165656	ENSGT00530000063841.b.b #13
Orange clownfish	MODERN SPECIES	1	NDUFA13 (ENSAPEG00000011952)	cirbpa (ENSAPEG00000011989)	ENSAPEG00000012024	ENSAPEG00000012060	stk11 (ENSAPEG00000012073)	SUGP1 (ENSAPEG00000012114)	rnf126 (ENSAPEG00000012142)	ENSAPEG00000012186	ENSAPEG00000012230	fzr1a (ENSAPEG00000012263)	plekhj1 (ENSAPEG00000012320)	sf3a2 (ENSAPEG00000012336)	ENSAPEG00000012351	ENSAPEG00000012371	ENSAPEG00000012394	map2k2b (ENSAPEG00000012403) #22	tcf3a (ENSAPEG00000012450)	UQCR11 (ENSAPEG00000012488)	mbd3a (ENSAPEG00000012496)	MEX3D (ENSAPEG00000012520)	UNC13A (ENSAPEG00000012677)	BTBD2 (ENSAPEG00000012786)	eef2b (ENSAPEG00000012820) #25	ENSAPEG00000012872	sirt6 (ENSAPEG00000012889) #20	cdc34b (ENSAPEG00000012916)	cactin (ENSAPEG00000012929) ##36	sema4e (ENSAPEG00000012955)	stap2a (ENSAPEG00000012974) #13	sh3gl1a (ENSAPEG00000013013) #11	rorcb (ENSAPEG00000013062)
Clown anemonefish	MODERN SPECIES	1295	NDUFA13 (ENSAOCG00000016234)	cirbpa (ENSAOCG00000016212)	ENSAOCG00000016195	ENSAOCG00000016184	stk11 (ENSAOCG00000016166)	SUGP1 (ENSAOCG00000016128)	rnf126 (ENSAOCG00000016106)	ENSAOCG00000016074	ENSAOCG00000002542	fzr1a (ENSAOCG00000016035)	plekhj1 (ENSAOCG00000002709)	sf3a2 (ENSAOCG00000015960)	ENSAOCG00000015917	ENSAOCG00000015906	ENSAOCG00000015862	map2k2b (ENSAOCG00000015707) #22	tcf3a (ENSAOCG00000015648)	UQCR11 (ENSAOCG00000015556)	mbd3a (ENSAOCG00000001075)	MEX3D (ENSAOCG00000015529)	UNC13A (ENSAOCG00000015504)	BTBD2 (ENSAOCG00000015404)	eef2b (ENSAOCG00000015356) #25	MAPKAPK3 (ENSAOCG00000015275)	pfkfb4a (ENSAOCG00000015220)	arpc4 (ENSAOCG00000002269)	tada3l (ENSAOCG00000015148)	RBM38 (ENSAOCG00000015117)
Spiny chromis	MODERN SPECIES	1688													ENSAPOG00000004434	ENSAPOG00000004456	ENSAPOG00000004611	map2k2b (ENSAPOG00000004735) #22	tcf3a (ENSAPOG00000004805)	UQCR11 (ENSAPOG00000004826)	mbd3a (ENSAPOG00000004857)	MEX3D (ENSAPOG00000000124)
Bicolor damselfish	MODERN SPECIES	1195									ENSSPAG00000004874	fzr1a (ENSSPAG00000004888)	plekhj1 (ENSSPAG00000004938)	sf3a2 (ENSSPAG00000004960)	ENSSPAG00000004979	ENSSPAG00000004997	ENSSPAG00000005020	map2k2b (ENSSPAG00000005154) #22	tcf3a (ENSSPAG00000005180)	ENSSPAG00000005242	mbd3a (ENSSPAG00000005249)	MEX3D (ENSSPAG00000005264)
Cichlidae	ANCESTRAL SPECIES	2	ENSGT00390000000719	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b #22	ENSGT00940000157036.e.b	ENSGT00390000018299	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000159179.g	ENSGT00940000154662.d #25	ENSGT00940000159261.d.b #21	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088 #20	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B ##36	ENSGT00940000165656	ENSGT00530000063841.b.b #13	ENSGT00940000154737.c.g #11
Pseudocrenilabrinae	ANCESTRAL SPECIES	7	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d.f	ENSGT00940000157113.d.e	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b #22	ENSGT00940000157036.e.b	ENSGT00390000018299	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000159179.g	ENSGT00940000154662.d #25	ENSGT00940000159261.d.b #21	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088 #20	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B ##36	ENSGT00940000165656	ENSGT00530000063841.b.b #13	ENSGT00940000154737.c.g #11
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	4	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d.f	ENSGT00940000157113.d.e	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b #22	ENSGT00940000157036.e.b	ENSGT00390000018299	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000159179.g	ENSGT00940000154662.d #25	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088 #20	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B ##36	ENSGT00940000165656	ENSGT00530000063841.b.b #13	ENSGT00940000154737.c.g #11	ENSGT00940000164939.a.b
Haplochromini	ANCESTRAL SPECIES	2	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d.f	ENSGT00940000157113.d.e	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b #22	ENSGT00940000157036.e.b	ENSGT00390000018299	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000159179.g	ENSGT00940000154662.d #25	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088 #20	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B ##36	ENSGT00940000165656	ENSGT00530000063841.b.b #13	ENSGT00940000154737.c.g #11	ENSGT00940000164939.a.b
Haplochromini_A	ANCESTRAL SPECIES	3	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d.f	ENSGT00940000157113.d.e	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b #22	ENSGT00940000157036.e.b	ENSGT00390000018299	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000159179.g	ENSGT00940000154662.d #25	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088 #20	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B ##36	ENSGT00940000165656	ENSGT00530000063841.b.b #13	ENSGT00940000154737.c.g #11	ENSGT00940000164939.a.b
Haplochromini_B	ANCESTRAL SPECIES	12	ENSGT00390000000719	ENSGT00940000165622	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00410000025695.a	ENSGT00940000157113.d.e	ENSGT00940000156523.b.d	ENSGT00950000182925.C.a.a	ENSGT00950000183104.B.a.b.a.a	ENSGT00390000005235	ENSGT00720000108823	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a	ENSGT00940000163251.b	ENSGT00940000153487.b.a.s.b #22	ENSGT00940000157036.e.b	ENSGT00390000018299	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000159179.g	ENSGT00940000154662.d #25	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088 #20	ENSGT00940000164811.a.b.b	ENSGT00950000183102.B ##36	ENSGT00940000165656	ENSGT00530000063841.b.b #13	ENSGT00940000154737.c.g #11	ENSGT00940000164939.a.b
Zebra mbuna	MODERN SPECIES	1100	NDUFA13 (ENSMZEG00005025576)	ENSMZEG00005025577	ENSMZEG00005025580	ENSMZEG00005025583	stk11 (ENSMZEG00005025586)	SUGP1 (ENSMZEG00005025588)	rnf126 (ENSMZEG00005025594)	ENSMZEG00005025597	ENSMZEG00005025600	fzr1a (ENSMZEG00005025605)	plekhj1 (ENSMZEG00005025608)	sf3a2 (ENSMZEG00005025609)	ENSMZEG00005025610	ENSMZEG00005025611	ENSMZEG00005025613	map2k2b (ENSMZEG00005025620) #22	tcf3a (ENSMZEG00005025622)	UQCR11 (ENSMZEG00005025623)	mbd3a (ENSMZEG00005025624)	MEX3D (ENSMZEG00005025626)	UNC13A (ENSMZEG00005025629)	BTBD2 (ENSMZEG00005025631)	eef2b (ENSMZEG00005025634) #25	ENSMZEG00005025636	sirt6 (ENSMZEG00005025637) #20	ENSMZEG00005025638	cactin (ENSMZEG00005025639) ##36	sema4e (ENSMZEG00005025640)	stap2a (ENSMZEG00005025641) #13	sh3gl1a (ENSMZEG00005025642) #11	rorcb (ENSMZEG00005025643)
Eastern happy	MODERN SPECIES	9	NDUFA13 (ENSACLG00000002082)	ENSACLG00000002094	ENSACLG00000002119	ENSACLG00000002139	stk11 (ENSACLG00000002194)	SUGP1 (ENSACLG00000002221)	rnf126 (ENSACLG00000002225)	ENSACLG00000002245	ENSACLG00000002268	fzr1a (ENSACLG00000002289)	plekhj1 (ENSACLG00000002336)	sf3a2 (ENSACLG00000002356)	ENSACLG00000002528	ENSACLG00000002533	ENSACLG00000002545	map2k2b (ENSACLG00000002553) #22	tcf3a (ENSACLG00000002577)	UQCR11 (ENSACLG00000002686)	mbd3a (ENSACLG00000002716)	MEX3D (ENSACLG00000002826)	UNC13A (ENSACLG00000002861)	BTBD2 (ENSACLG00000003010)	eef2b (ENSACLG00000003034) #25	ENSACLG00000003077	sirt6 (ENSACLG00000003087) #20	ENSACLG00000003102	cactin (ENSACLG00000003120) ##36	sema4e (ENSACLG00000003140)	stap2a (ENSACLG00000003155) #13	sh3gl1a (ENSACLG00000003187) #11	rorcb (ENSACLG00000003222)
P. nyererei	MODERN SPECIES	299	ENSPNYG00000007198	ENSPNYG00000007184	ENSPNYG00000007161	stk11 (ENSPNYG00000007076)	ENSPNYG00000007066	ENSPNYG00000007047	rnf126 (ENSPNYG00000007041)	ENSPNYG00000007014	ENSPNYG00000007001	fzr1a (ENSPNYG00000006958)	plekhj1 (ENSPNYG00000006936)	sf3a2 (ENSPNYG00000006928)	ENSPNYG00000006911	ENSPNYG00000006893	ENSPNYG00000006841	map2k2b (ENSPNYG00000006796) #22	tcf3a (ENSPNYG00000006730)	UQCR11 (ENSPNYG00000006711)	mbd3a (ENSPNYG00000006645)	MEX3D (ENSPNYG00000006622)	UNC13A (ENSPNYG00000006554)	BTBD2 (ENSPNYG00000006514)	eef2b (ENSPNYG00000006476) #25	ENSPNYG00000006452	sirt6 (ENSPNYG00000006430) #20	ENSPNYG00000006413	cactin (ENSPNYG00000006390) ##36	sema4e (ENSPNYG00000006379)	stap2a (ENSPNYG00000006342) #13	sh3gl1a (ENSPNYG00000006304) #11	rorcb (ENSPNYG00000006271)
Burton s mouthbrooder	MODERN SPECIES	306	NDUFA13 (ENSHBUG00000022075)	cirbpa (ENSHBUG00000022060)	ENSHBUG00000022050	ENSHBUG00000022044	stk11 (ENSHBUG00000022038)	SUGP1 (ENSHBUG00000022000)	rnf126 (ENSHBUG00000021965)	ENSHBUG00000021923	ENSHBUG00000021888	fzr1a (ENSHBUG00000021847)	plekhj1 (ENSHBUG00000021808)	sf3a2 (ENSHBUG00000021796)	ENSHBUG00000021785	ENSHBUG00000021775	ENSHBUG00000021754	map2k2b (ENSHBUG00000021744) #22	tcf3a (ENSHBUG00000021717)	UQCR11 (ENSHBUG00000021625)	mbd3a (ENSHBUG00000021612)	MEX3D (ENSHBUG00000021600)	UNC13A (ENSHBUG00000021558)	BTBD2 (ENSHBUG00000021419)	eef2b (ENSHBUG00000021382) #25	ENSHBUG00000021305	sirt6 (ENSHBUG00000021297) #20	ENSHBUG00000021254	cactin (ENSHBUG00000021214) ##36	sema4e (ENSHBUG00000021180)	stap2a (ENSHBUG00000021154) #13	sh3gl1a (ENSHBUG00000021136) #11	rorcb (ENSHBUG00000021110)
Lyretail cichlid	MODERN SPECIES	300	NDUFA13 (ENSNBRG00000019643)	cirbpa (ENSNBRG00000019658)	ENSNBRG00000019693	ENSNBRG00000019709	stk11 (ENSNBRG00000019738)	ENSNBRG00000019759	ENSNBRG00000019774	rnf126 (ENSNBRG00000019784)	ENSNBRG00000019794	ENSNBRG00000019812	fzr1a (ENSNBRG00000019842)	plekhj1 (ENSNBRG00000019862)	sf3a2 (ENSNBRG00000019872)	ENSNBRG00000019904	ENSNBRG00000019917	map2k2b (ENSNBRG00000019941) #22	tcf3a (ENSNBRG00000019974)	UQCR11 (ENSNBRG00000020012)	mbd3a (ENSNBRG00000020027)	MEX3D (ENSNBRG00000020089)	UNC13A (ENSNBRG00000020104)	BTBD2 (ENSNBRG00000020180)	eef2b (ENSNBRG00000020205) #25	ENSNBRG00000020250	sirt6 (ENSNBRG00000020268) #20	ENSNBRG00000020291	cactin (ENSNBRG00000020310) ##36	sema4e (ENSNBRG00000020335)	stap2a (ENSNBRG00000020352) #13	sh3gl1a (ENSNBRG00000020383) #11	rorcb (ENSNBRG00000020403)
Nile tilapia	MODERN SPECIES	9	NDUFA13 (ENSONIG00000010166)	cirbpa (ENSONIG00000010169)	ENSONIG00000010171	ENSONIG00000010173	stk11 (ENSONIG00000010176)	SUGP1 (ENSONIG00000010178)	rnf126 (ENSONIG00000010181)	ENSONIG00000010188	ENSONIG00000010190	fzr1a (ENSONIG00000010194)	plekhj1 (ENSONIG00000035519)	sf3a2 (ENSONIG00000027140)	ENSONIG00000010199	ENSONIG00000039080	ENSONIG00000010200	map2k2b (ENSONIG00000010201) #22	tcf3a (ENSONIG00000010206)	UQCR11 (ENSONIG00000041241)	mbd3a (ENSONIG00000010217)	MEX3D (ENSONIG00000028717)	UNC13A (ENSONIG00000010221)	BTBD2 (ENSONIG00000010224)	eef2b (ENSONIG00000010226) #25	ENSONIG00000010228 #21	ENSONIG00000010229	sirt6 (ENSONIG00000010230) #20	ENSONIG00000002295	cactin (ENSONIG00000010237) ##36	sema4e (ENSONIG00000010239)	stap2a (ENSONIG00000010244) #13	ENSONIG00000033280
Midas cichlid	MODERN SPECIES	1217				ENSACIG00000018437	stk11 (ENSACIG00000018328)	SUGP1 (ENSACIG00000018294)	rnf126 (ENSACIG00000018279)	ENSACIG00000018262	ENSACIG00000018222	FZR1 (ENSACIG00000018193)	plekhj1 (ENSACIG00000018173)	sf3a2 (ENSACIG00000018153)	ENSACIG00000018134	ENSACIG00000018119	ENSACIG00000017976	map2k2b (ENSACIG00000017944) #22	tcf3a (ENSACIG00000017917)	UQCR11 (ENSACIG00000017911)	mbd3a (ENSACIG00000017776)	MEX3D (ENSACIG00000017738)	UNC13A (ENSACIG00000017680)	BTBD2 (ENSACIG00000017658)	eef2b (ENSACIG00000017631) #25	ENSACIG00000017621	ENSACIG00000017614	RXFP3 (ENSACIG00000017604)	sirt6 (ENSACIG00000017596) #20	ENSACIG00000017466	cactin (ENSACIG00000017436) ##36	sema4e (ENSACIG00000017360)	stap2a (ENSACIG00000017334) #13
Pinecone sodierfish	MODERN SPECIES	8	ENSMMDG00005003168	ENSMMDG00005002926	ENSMMDG00005002904	ENSMMDG00005002898	stk11 (ENSMMDG00005002884)	SUGP1 (ENSMMDG00005002857)	rnf126 (ENSMMDG00005002837)	ENSMMDG00005002824	ENSMMDG00005002807	fzr1a (ENSMMDG00005002253)	plekhj1 (ENSMMDG00005002240)	sf3a2 (ENSMMDG00005002233)	ENSMMDG00005002228	ENSMMDG00005002225	ENSMMDG00005002114	map2k2b (ENSMMDG00005002024) #22	ENSMMDG00005002010	tcf3a (ENSMMDG00005002001)	ENSMMDG00005001997	mbd3a (ENSMMDG00005001994)	MEX3D (ENSMMDG00005001969)	UNC13A (ENSMMDG00005001615)	BTBD2 (ENSMMDG00005001492)	eef2b (ENSMMDG00005001466) #25	ENSMMDG00005001458	sirt6 (ENSMMDG00005001413) #20	cdc34b (ENSMMDG00005001373)	cactin (ENSMMDG00005001364) ##36	sema4e (ENSMMDG00005001353)	stap2a (ENSMMDG00005001339) #13	sh3gl1a (ENSMMDG00005001323) #11
Cod	MODERN SPECIES	21	MAU2 (ENSGMOG00000028080)	ENSGMOG00000012130	NDUFA13 (ENSGMOG00000012133)	ENSGMOG00000012137	ENSGMOG00000036457	ENSGMOG00000012155	ENSGMOG00000012159	ENSGMOG00000012165	ENSGMOG00000011849	ENSGMOG00000012177	ENSGMOG00000023161	plekhj1 (ENSGMOG00000012181)	sf3a2 (ENSGMOG00000012186)	ENSGMOG00000012197	ONECUT3 (ENSGMOG00000012200)	map2k2b (ENSGMOG00000012201) #22	tcf3a (ENSGMOG00000012207)	mbd3a (ENSGMOG00000012214)	MEX3D (ENSGMOG00000023271)	ENSGMOG00000012220	ENSGMOG00000012238	ENSGMOG00000032283 #21	ENSGMOG00000012240	ENSGMOG00000012243 #20	ENSGMOG00000012247	cactin (ENSGMOG00000012251) ##36	sema4e (ENSGMOG00000012258)	stap2a (ENSGMOG00000012268) #13	sh3gl1a (ENSGMOG00000032798) #11	rorcb (ENSGMOG00000012277)	ENSGMOG00000020569
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000153487.b.a.t #22
Osteoglossiformes	ANCESTRAL SPECIES	72	ENSGT00950000182971.B.a.a	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a.b	ENSGT00390000008279.b.l	ENSGT00940000165458	ENSGT00390000012355.A.b	ENSGT00940000155914.c.b	ENSGT00390000018395	ENSGT00500000045074	ENSGT00390000005235	ENSGT00720000108823	ENSGT00940000159808.j	ENSGT00940000164500.a	ENSGT00950000183103.d.b.a.a	ENSGT01030000234539.a.a.a.e #24	ENSGT00940000153487.b.a.t #22	ENSGT00940000166752.b	ENSGT00940000157036.e.b	ENSGT00940000162613.d	ENSGT00940000154662.d.d.b.a #25	ENSGT00940000159261.d.b #21	ENSGT00940000160088 #20	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.b.a	ENSGT00950000183112.b.a.a.b.b	ENSGT00940000162487	ENSGT00950000182925.C.a.a	ENSGT00940000161721.h	ENSGT00940000156523.b.f	ENSGT00940000159142.t
Asian bonytongue	MODERN SPECIES	17	odf3l2a (ENSSFOG00015011278)	crlf1a (ENSSFOG00015011257)	ENSSFOG00015011186	keap1a (ENSSFOG00015025073)	zgc:110158 (ENSSFOG00015011080)	ENSSFOG00015031291	ELL (ENSSFOG00015026649)	ISYNA1 (ENSSFOG00015010978)	plekhj1 (ENSSFOG00015025381)	sf3a2 (ENSSFOG00015033304)	oaz1a (ENSSFOG00015010906)	ENSSFOG00015025090	ENSSFOG00015030242	ONECUT3 (ENSSFOG00015024703)	pias4b (ENSSFOG00015010810) #24	MAP2K2 (ENSSFOG00015028124) #22	ENSSFOG00015029384	tcf3a (ENSSFOG00015010645)	ENSSFOG00015010547	eef2b (ENSSFOG00015010432) #25	CREB3L3 (ENSSFOG00015010395) #21	sirt6 (ENSSFOG00015028025) #20	CELF5 (ENSSFOG00015010315)	HSD11B1L (ENSSFOG00015010301)	ENSSFOG00015010276	FGF22 (ENSSFOG00015010264)	HCN2 (ENSSFOG00015010200)	ENSSFOG00015010250	bsg (ENSSFOG00015028160)	rnf126 (ENSSFOG00015010159)	FSTL3 (ENSSFOG00015027716)
P. kingsleyae	MODERN SPECIES	57	ENSPKIG00000011995	gk5 (ENSPKIG00000011960)	ENSPKIG00000011925	ENSPKIG00000011903	ppp1r7 (ENSPKIG00000011862)	ubxn7 (ENSPKIG00000011801)	ENSPKIG00000011763	ENSPKIG00000011737	PSMD2 (ENSPKIG00000011651)	ENSPKIG00000011576	AP2M1 (ENSPKIG00000011484)	pcyt1ab (ENSPKIG00000011434)	zgc:92744 (ENSPKIG00000011400)	SUCNR1 (ENSPKIG00000011391)	PIAS4 (ENSPKIG00000011366) #24	MAP2K2 (ENSPKIG00000011327) #22	ENSPKIG00000011310	tcf3a (ENSPKIG00000011233)	MEX3D (ENSPKIG00000011176)	eef2b (ENSPKIG00000011101) #25	ENSPKIG00000011068 #21	sirt6 (ENSPKIG00000011041) #20	ENSPKIG00000010998	rgmd (ENSPKIG00000010968)	HSD11B1L (ENSPKIG00000010947)	ENSPKIG00000010931	FGF22 (ENSPKIG00000010914)	HCN2 (ENSPKIG00000010869)	bsg (ENSPKIG00000010826)	ENSPKIG00000010809	ENSPKIG00000010799
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00940000153487.b.a.t #22
Otomorpha	ANCESTRAL SPECIES																	ENSGT00940000153487.b.a.t #22
Clupeiformes	ANCESTRAL SPECIES																	ENSGT00940000153487.b.a.t #22
Atlantic herring	DUPLICATION
Atlantic herring	MODERN SPECIES	17	ENSCHAG00000007645	ENSCHAG00000007620	scn12aa (ENSCHAG00000007432)	ACVR2B (ENSCHAG00000005509)	ENSCHAG00000005433	UNC13A (ENSCHAG00000002242)	MEX3D (ENSCHAG00000002074)	ENSCHAG00000002047	zpr1 (ENSCHAG00000002035)	mbd3a (ENSCHAG00000001357)	ENSCHAG00000001282	zpr1 (ENSCHAG00000001273)	ENSCHAG00000000842	ENSCHAG00000007271 #22	ENSCHAG00000007248	ENSCHAG00000007102 #22	ENSCHAG00000006973	ENSCHAG00000006844	ENSCHAG00000006809	ENSCHAG00000006781	ENSCHAG00000006753	ENSCHAG00000006732	ENSCHAG00000006726	ENSCHAG00000006695	ENSCHAG00000006677	ENSCHAG00000006656	ENSCHAG00000006579	sirt6 (ENSCHAG00000006454) #20	ENSCHAG00000006433	RXFP3 (ENSCHAG00000006403)	ENSCHAG00000006388 #21
Atlantic herring	MODERN SPECIES	17	ENSCHAG00000006433	sirt6 (ENSCHAG00000006454) #20	ENSCHAG00000006579	ENSCHAG00000006656	ENSCHAG00000006677	ENSCHAG00000006695	ENSCHAG00000006726	ENSCHAG00000006732	ENSCHAG00000006753	ENSCHAG00000006781	ENSCHAG00000006809	ENSCHAG00000006844	ENSCHAG00000006973	ENSCHAG00000007102 #22	ENSCHAG00000007248	ENSCHAG00000007271 #22	ENSCHAG00000000842	zpr1 (ENSCHAG00000001273)	ENSCHAG00000001282	mbd3a (ENSCHAG00000001357)	zpr1 (ENSCHAG00000002035)	ENSCHAG00000002047	MEX3D (ENSCHAG00000002074)	UNC13A (ENSCHAG00000002242)	ENSCHAG00000005433	ACVR2B (ENSCHAG00000005509)	scn12aa (ENSCHAG00000007432)	ENSCHAG00000007620	ENSCHAG00000007645	ENSCHAG00000007674	ENSCHAG00000007878
Reedfish	MODERN SPECIES	3	ENSECRG00000017496	ENSECRG00000017514	ENSECRG00000017530	ENSECRG00000017545	ENSECRG00000017584	ENSECRG00000017657	ENSECRG00000017679	ENSECRG00000017696	ENSECRG00000017716	ENSECRG00000017749	ENSECRG00000017874	ONECUT3 (ENSECRG00000018237)	foxq2 (ENSECRG00000018258)	ENSECRG00000018276	pias4a (ENSECRG00000018290) #24	map2k2a (ENSECRG00000018359) #22	ZBTB7A (ENSECRG00000018510) #23	tcf3b (ENSECRG00000018537)	UQCR11 (ENSECRG00000018568)	MBD3 (ENSECRG00000018591)	MEX3D (ENSECRG00000018631)	mbd3b (ENSECRG00000018689)	ENSECRG00000018977	hmg20b (ENSECRG00000019498)	btbd2a (ENSECRG00000019539)	ENSECRG00000019632 #25	creb3l3a (ENSECRG00000019697) #21	ENSECRG00000019730	sirt6 (ENSECRG00000019747) #20	ENSECRG00000019776 #19	ENSECRG00000019805
Elephant shark	MODERN SPECIES	1570	EPS15L1 (ENSCMIG00000018358)	klf2a (ENSCMIG00000018504)	ap1m1 (ENSCMIG00000018540)	FAM32A (ENSCMIG00000018642)	ENSCMIG00000018660	ctns (ENSCMIG00000018690)	palm1b (ENSCMIG00000018692)	PLPPR3 (ENSCMIG00000018693)	ENSCMIG00000018694	ENSCMIG00000018701	ENSCMIG00000018717 #18	ENSCMIG00000018722 #19	sirt6 (ENSCMIG00000018726) #20	rxfp3.2b (ENSCMIG00000018736)	ENSCMIG00000018739 #21	map2k2a (ENSCMIG00000018756) #22	ZBTB7A (ENSCMIG00000018762) #23	ENSCMIG00000018764 #24	eef2 (ENSCMIG00000018833) #25	ENSCMIG00000018922	ENSCMIG00000018924	ENSCMIG00000018925	ENSCMIG00000018973	ENSCMIG00000019127	ENSCMIG00000019213	ENSCMIG00000019261	ENSCMIG00000019263	ENSCMIG00000019266	dpp9 (ENSCMIG00000019315)	rpl37 (ENSCMIG00000019413)	elavl1b (ENSCMIG00000019418)
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000153487.b.a #22
Lamprey	MODERN SPECIES	5621																ENSPMAG00000000606 #22