Tetrapoda	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a #22
Amniota	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a #22
Mammalia	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a #22
Theria	ANCESTRAL SPECIES	2	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a #22	ENSGT00950000185738	ENSGT00390000002517.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT01060000249814	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.b ##28	ENSGT01030000234570.d.b.a.a.a.b.a.a #29	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34
Eutheria	DUPLICATION
Eutheria	DUPLICATION
Eutheria	ANCESTRAL SPECIES	1	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00950000185738	ENSGT00390000002517.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT01060000249814	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.b ##28	ENSGT01030000234570.d.b.a.a.a.b.a.a #29	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34
Boreoeutheria	ANCESTRAL SPECIES	6	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00910000147679	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00950000185738	ENSGT00390000002517.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT01060000249814	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.b ##28	ENSGT01030000234570.d.b.a.a.a.b.a.a #29	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519
Euarchontoglires	ANCESTRAL SPECIES	6	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00910000147679	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT01060000249814	ENSGT00940000154281.m.a #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a #29	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519	ENSGT00950000182908.B #34	ENSGT00940000160056 #35
Primates	ANCESTRAL SPECIES	6	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00910000147679	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00940000156107 #23	ENSGT00940000154281.m.a #24	ENSGT01060000249814	ENSGT00940000154281.n ##24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a #29	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519	ENSGT00950000182908.B #34	ENSGT00940000160056 #35
Haplorrhini	ANCESTRAL SPECIES	3	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00910000147679	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00940000156107 #23	ENSGT00940000154281.m.a #24	ENSGT01060000249814	ENSGT00940000154281.n ##24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a #29	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519	ENSGT00950000182908.B #34	ENSGT00940000160056 #35
Simiiformes	ANCESTRAL SPECIES	4	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944.e.a.a.b #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00910000147679	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT00900000143559	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a.b ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36
Platyrrhini	ANCESTRAL SPECIES	6	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944.e.a.a.b #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00940000156107 #23	ENSGT00940000154281.m.a.c #24	ENSGT01060000249814	ENSGT00940000154281.n ##24	ENSGT00900000143559.a	ENSGT00940000154281.m.a.d ##24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a.b ##28	ENSGT01030000234570.d.b.a.a.a.b.a.a.a.a ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B.t ##31	ENSGT00940000161079 #32	ENSGT00940000161155 #33
Cebidae	ANCESTRAL SPECIES	2	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944.e.a.b.a ##11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT00900000143559.a	ENSGT00940000154281.m.a.d ##24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a.a.b #29	ENSGT01030000234570.d.b.a.a.a.b.a.a.a.a ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B.t ##31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35
Marmoset	MODERN SPECIES	21	ITGA7 (ENSCJAG00000008045) #7	RDH5 (ENSCJAG00000046469) #8	CD63 (ENSCJAG00000007935) #9	GDF11 (ENSCJAG00000007914) #10	ENSCJAG00000007853 #11	ORMDL2 (ENSCJAG00000044739) #12	DNAJC14 (ENSCJAG00000007817) #13	MMP19 (ENSCJAG00000007789) #14	PYM1 (ENSCJAG00000041077) #15	DGKA (ENSCJAG00000007591) #16	PMEL (ENSCJAG00000007553) #17	CDK2 (ENSCJAG00000007404) #18	RAB5B (ENSCJAG00000041780) #19	SUOX (ENSCJAG00000006272) #20	IKZF4 (ENSCJAG00000006230) #21	RPS26 (ENSCJAG00000048105) #22	ERBB3 (ENSCJAG00000011936) #23	PA2G4 (ENSCJAG00000011811) #24	ENSCJAG00000080468 #25	ZC3H10 (ENSCJAG00000045638) #26	ESYT1 (ENSCJAG00000011638) #27	MYL6B (ENSCJAG00000011620) #28	ENSCJAG00000002241 #29	SMARCC2 (ENSCJAG00000011483) #30	RNF41 (ENSCJAG00000011457) #31	NABP2 (ENSCJAG00000011455) #32	SLC39A5 (ENSCJAG00000011444) #33	ANKRD52 (ENSCJAG00000011349) #34	ENSCJAG00000011319 #35	CS (ENSCJAG00000011275) #36	CNPY2 (ENSCJAG00000011259) #37
Cebidae_a	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.a #22
Bolivian squirrel monkey	DUPLICATION
Bolivian squirrel monkey	MODERN SPECIES	153	ITGA7 (ENSSBOG00000031271) #7	RDH5 (ENSSBOG00000022798) #8	CD63 (ENSSBOG00000022910) #9	GDF11 (ENSSBOG00000033742) #10	ENSSBOG00000035337 ##11	ORMDL2 (ENSSBOG00000031832) #12	DNAJC14 (ENSSBOG00000036114) #13	MMP19 (ENSSBOG00000034370) #14	PYM1 (ENSSBOG00000029393) #15	DGKA (ENSSBOG00000035323) #16	PMEL (ENSSBOG00000016125) #17	CDK2 (ENSSBOG00000035751) #18	RAB5B (ENSSBOG00000035419) #19	SUOX (ENSSBOG00000034872) #20	IKZF4 (ENSSBOG00000020767) #21	RPS26 (ENSSBOG00000032351) #22	ENSSBOG00000022618	ERBB3 (ENSSBOG00000033752) #23	ENSSBOG00000021015 ##24	ENSSBOG00000026997	ZC3H10 (ENSSBOG00000019876) #26	ESYT1 (ENSSBOG00000035398) #27	ENSSBOG00000030236 ##28	SMARCC2 (ENSSBOG00000024572) #30	RNF41 (ENSSBOG00000003641) ##31	NABP2 (ENSSBOG00000010714) #32	SLC39A5 (ENSSBOG00000034171) #33	ANKRD52 (ENSSBOG00000036251) #34	COQ10A (ENSSBOG00000007657) #35	CS (ENSSBOG00000022936) #36	CNPY2 (ENSSBOG00000022645) #37
Bolivian squirrel monkey	MODERN SPECIES	47	ENSSBOG00000036188	SLF2 (ENSSBOG00000034063)	SEMA4G (ENSSBOG00000026805)	MRPL43 (ENSSBOG00000022294)	TWNK (ENSSBOG00000020346)	LZTS2 (ENSSBOG00000032084)	PDZD7 (ENSSBOG00000035647)	SFXN3 (ENSSBOG00000032559)	KAZALD1 (ENSSBOG00000032715)	ENSSBOG00000030742	LBX1 (ENSSBOG00000026504)	BTRC (ENSSBOG00000034480)	POLL (ENSSBOG00000035823)	DPCD (ENSSBOG00000024659)	FBXW4 (ENSSBOG00000036214)	ENSSBOG00000026520 #22	FGF8 (ENSSBOG00000026891)	NPM3 (ENSSBOG00000027661)	OGA (ENSSBOG00000024431)	KCNIP2 (ENSSBOG00000029268)	ENSSBOG00000028614	ARMH3 (ENSSBOG00000027965)	LDB1 (ENSSBOG00000029453)	PPRC1 (ENSSBOG00000021902)	NOLC1 (ENSSBOG00000031205)	ELOVL3 (ENSSBOG00000028586)	ENSSBOG00000016252	GBF1 (ENSSBOG00000021062)	NFKB2 (ENSSBOG00000027266)	PSD (ENSSBOG00000025518)	FBXL15 (ENSSBOG00000024265)
Capuchin	DUPLICATION
Capuchin	DUPLICATION
Capuchin	MODERN SPECIES	277						ENSCCAG00000029361	ZMYM4 (ENSCCAG00000037293)	KIAA0319L (ENSCCAG00000034416)	NCDN (ENSCCAG00000035361)	TFAP2E (ENSCCAG00000014473)	ENSCCAG00000025604	ENSCCAG00000020290	C1orf216 (ENSCCAG00000032404)	ENSCCAG00000032336	CLSPN (ENSCCAG00000020740)	ENSCCAG00000007055 #22	AGO4 (ENSCCAG00000001397)	AGO1 (ENSCCAG00000011823)	AGO3 (ENSCCAG00000034189)	TEKT2 (ENSCCAG00000034337)	ADPRS (ENSCCAG00000029534)	COL8A2 (ENSCCAG00000034498)	TRAPPC3 (ENSCCAG00000016538)	MAP7D1 (ENSCCAG00000023770)	THRAP3 (ENSCCAG00000028401)	SH3D21 (ENSCCAG00000027849)	EVA1B (ENSCCAG00000025930)	STK40 (ENSCCAG00000035718)	ENSCCAG00000037064	CEP63 (ENSCCAG00000027864)	KY (ENSCCAG00000017585)
Capuchin	MODERN SPECIES	18	CBFA2T2 (ENSCCAG00000030202)	C20orf144 (ENSCCAG00000001393)	ACTL10 (ENSCCAG00000020021)	NECAB3 (ENSCCAG00000025337)	E2F1 (ENSCCAG00000031862)	PXMP4 (ENSCCAG00000023929)	ZNF341 (ENSCCAG00000022663)	CHMP4B (ENSCCAG00000035412)	RALY (ENSCCAG00000024548)	ENSCCAG00000035446	ASIP (ENSCCAG00000034213)	ENSCCAG00000036415	ITCH (ENSCCAG00000036090)	ENSCCAG00000026601	MAP1LC3A (ENSCCAG00000026883)	ENSCCAG00000018006 #22	ENSCCAG00000020219	PIGU (ENSCCAG00000032834)	TP53INP2 (ENSCCAG00000029034)	ENSCCAG00000033808	NCOA6 (ENSCCAG00000011874)	GGT7 (ENSCCAG00000027060)	ACSS2 (ENSCCAG00000030998)	GSS (ENSCCAG00000032388)	MYH7B (ENSCCAG00000029746)	TRPC4AP (ENSCCAG00000033819)	EDEM2 (ENSCCAG00000025032)	PROCR (ENSCCAG00000029686)	MMP24 (ENSCCAG00000029749)	MMP24OS (ENSCCAG00000003817)	EIF6 (ENSCCAG00000030532)
Capuchin	MODERN SPECIES	18	IGF1 (ENSCCAG00000036468)	PMCH (ENSCCAG00000034254)	PARPBP (ENSCCAG00000023389)	NUP37 (ENSCCAG00000023761)	WASHC3 (ENSCCAG00000024202)	DRAM1 (ENSCCAG00000030755)	GNPTAB (ENSCCAG00000030235)	ENSCCAG00000020303	CHPT1 (ENSCCAG00000021551)	MYBPC1 (ENSCCAG00000034345)	ENSCCAG00000011395	SPIC (ENSCCAG00000023632)	ARL1 (ENSCCAG00000025938)	UTP20 (ENSCCAG00000031422)	SLC5A8 (ENSCCAG00000019178)	ENSCCAG00000000039 #22	ENSCCAG00000018652	ANO4 (ENSCCAG00000034484)	GAS2L3 (ENSCCAG00000037369)	NR1H4 (ENSCCAG00000021055)	SLC17A8 (ENSCCAG00000001913)	ENSCCAG00000008128	ENSCCAG00000031769	ACTR6 (ENSCCAG00000024707)	ENSCCAG00000037286	UHRF1BP1L (ENSCCAG00000037649)	FAM71C (ENSCCAG00000035595)	ANKS1B (ENSCCAG00000032069)	APAF1 (ENSCCAG00000036130)	IKBIP (ENSCCAG00000035750)	ENSCCAG00000021600
Capuchin	DUPLICATION
Capuchin	MODERN SPECIES	571	HDAC5 (ENSCCAG00000033739)	G6PC3 (ENSCCAG00000027267)	LSM12 (ENSCCAG00000032905)	TMEM101 (ENSCCAG00000032587)	NAGS (ENSCCAG00000021974)	PYY (ENSCCAG00000031178)	PPY (ENSCCAG00000029696)	ENSCCAG00000025350	MPP2 (ENSCCAG00000012070)	CD300LG (ENSCCAG00000027434)	MPP3 (ENSCCAG00000031697)	CFAP97D1 (ENSCCAG00000025057)	ENSCCAG00000033996	SOST (ENSCCAG00000024063)	ENSCCAG00000021758	ENSCCAG00000028188 #22	MEOX1 (ENSCCAG00000025492)	ENSCCAG00000024203	ETV4 (ENSCCAG00000023675)	DHX8 (ENSCCAG00000021748)	ARL4D (ENSCCAG00000014166)
Capuchin	MODERN SPECIES	207														MAP3K2 (ENSCCAG00000036037)	ENSCCAG00000036601	ENSCCAG00000037456 #22	IWS1 (ENSCCAG00000033787)	MYO7B (ENSCCAG00000021238)	LIMS2 (ENSCCAG00000032967)	GPR17 (ENSCCAG00000032308)	WDR33 (ENSCCAG00000031522)	POLR2D (ENSCCAG00000037709)	AMMECR1L (ENSCCAG00000021083)	ENSCCAG00000021284	ENSCCAG00000036706	UGGT1 (ENSCCAG00000014054)	HS6ST1 (ENSCCAG00000032091)	ENSCCAG00000027181	LINGO2 (ENSCCAG00000000483)
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	1031	ITGA7 (ENSANAG00000035353) #7	RDH5 (ENSANAG00000022716) #8	CD63 (ENSANAG00000038468) #9	GDF11 (ENSANAG00000033148) #10	ENSANAG00000027405 #11	ORMDL2 (ENSANAG00000016422) #12	DNAJC14 (ENSANAG00000024440) #13	MMP19 (ENSANAG00000038306) #14	PYM1 (ENSANAG00000036967) #15	DGKA (ENSANAG00000021131) #16	PMEL (ENSANAG00000024505) #17	ENSANAG00000027529 #18	RAB5B (ENSANAG00000033215) #19	SUOX (ENSANAG00000032655) #20	IKZF4 (ENSANAG00000027980) #21	RPS26 (ENSANAG00000026303) #22	ENSANAG00000029701	ENSANAG00000026759	ERBB3 (ENSANAG00000025783) #23	PA2G4 (ENSANAG00000036810) #24	RPL41 (ENSANAG00000038487)	ENSANAG00000011627	ZC3H10 (ENSANAG00000004774) #26	ESYT1 (ENSANAG00000019507) #27	MYL6B (ENSANAG00000021453) #28	ENSANAG00000036848 ##28	SMARCC2 (ENSANAG00000033886) #30	RNF41 (ENSANAG00000034135) ##31	NABP2 (ENSANAG00000020737) #32	SLC39A5 (ENSANAG00000037530) #33	ENSANAG00000037861
Mas night monkey	MODERN SPECIES	1014								ENSANAG00000028868	NTAN1 (ENSANAG00000028960)	PDXDC1 (ENSANAG00000020566)	MPV17L (ENSANAG00000031870)	BMERB1 (ENSANAG00000029744)	MARF1 (ENSANAG00000028120)	NDE1 (ENSANAG00000031285)	MYH11 (ENSANAG00000023118)	ENSANAG00000030061 #22	CEP20 (ENSANAG00000023647)
Catarrhini	ANCESTRAL SPECIES	4	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944.e.a.a.b #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00910000147679	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT00900000143559	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a.b ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36
Cercopithecidae	ANCESTRAL SPECIES	3	ENSGT00390000002944.e.a.a.b #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00910000147679	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00910000147269	ENSGT00390000002517.a.a.c.a #22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT00900000143559	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a.b ##28	ENSGT00940000155746 #30	ENSGT00900000143705	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519	ENSGT00950000182908.B #34	ENSGT00940000160056 #35
Rhinopithecus	DUPLICATION
Rhinopithecus	DUPLICATION
Rhinopithecus	ANCESTRAL SPECIES	75	ENSGT00390000002944.e.a.a.b.a #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00910000147679	ENSGT00390000003749 #20	ENSGT00910000147269	ENSGT00390000002517.a.a.c.a.n #22	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a.m.a #22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.b ##28	ENSGT00390000014594	ENSGT00390000006922.m.b.a.c.b.c	ENSGT00390000014781.g.b.a.b	ENSGT00390000014781.g.b.b	ENSGT01030000234558.C	ENSGT00940000156012	ENSGT00940000154654.ab.a	ENSGT00530000063843.b	ENSGT00910000148306
Black snub-nosed monkey	DUPLICATION
Black snub-nosed monkey	MODERN SPECIES	820		ENSRBIG00000011639	ECE1 (ENSRBIG00000042375)	ENSRBIG00000040628	ALPL (ENSRBIG00000034890)	RAP1GAP (ENSRBIG00000026760)	USP48 (ENSRBIG00000034751)	LDLRAD2 (ENSRBIG00000038368)	ENSRBIG00000029775	HSPG2 (ENSRBIG00000028096)	CELA3A (ENSRBIG00000032732)	ENSRBIG00000042316	WNT4 (ENSRBIG00000004240)	ENSRBIG00000037287	ZBTB40 (ENSRBIG00000034608)	ENSRBIG00000029605 #22	EPHA8 (ENSRBIG00000042028)	C1QA (ENSRBIG00000036287)	C1QC (ENSRBIG00000020363)	C1QB (ENSRBIG00000020453)	EPHB2 (ENSRBIG00000044791)	LACTBL1 (ENSRBIG00000033393)	TEX46 (ENSRBIG00000039313)	KDM1A (ENSRBIG00000039880)	LUZP1 (ENSRBIG00000034178)	HTR1D (ENSRBIG00000017300)	HNRNPR (ENSRBIG00000028640)	ZNF436 (ENSRBIG00000042279)	TCEA3 (ENSRBIG00000031356)	ASAP3 (ENSRBIG00000031176)	E2F2 (ENSRBIG00000039935)
Black snub-nosed monkey	MODERN SPECIES	784															ENSRBIG00000034876 #22	ENSRBIG00000001013 #22
Golden snub-nosed monkey	MODERN SPECIES	2036	CD63 (ENSRROG00000045040) #9	GDF11 (ENSRROG00000041390) #10	ENSRROG00000035177 #11	ORMDL2 (ENSRROG00000039694) #12	DNAJC14 (ENSRROG00000042123) #13	ENSRROG00000039629	MMP19 (ENSRROG00000031006) #14	PYM1 (ENSRROG00000043620) #15	DGKA (ENSRROG00000023682) #16	PMEL (ENSRROG00000042170) #17	CDK2 (ENSRROG00000030866) #18	RAB5B (ENSRROG00000037973) #19	SUOX (ENSRROG00000044121) #20	ENSRROG00000032018	IKZF4 (ENSRROG00000043179) #21	RPS26 (ENSRROG00000042720) #22	ERBB3 (ENSRROG00000029845) #23	ENSRROG00000005689 ##24	ENSRROG00000035193	ZC3H10 (ENSRROG00000013225) #26	ESYT1 (ENSRROG00000035112) #27	ENSRROG00000010380 #28	MYL6 (ENSRROG00000035863) ##28	SMARCC2 (ENSRROG00000035933) #30	ENSRROG00000033535	RNF41 (ENSRROG00000034005) #31	NABP2 (ENSRROG00000044063) #32	SLC39A5 (ENSRROG00000032733) #33	ENSRROG00000039973	ANKRD52 (ENSRROG00000040375) #34	COQ10A (ENSRROG00000036046) #35
Rhinopithecus	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.a.m.b #22
Golden snub-nosed monkey	MODERN SPECIES	1728												ENSRROG00000040018	RCN2 (ENSRROG00000037928)	PSTPIP1 (ENSRROG00000033013)	TSPAN3 (ENSRROG00000031133)	ENSRROG00000037573 #22	PEAK1 (ENSRROG00000037269)	ENSRROG00000039979	HMG20A (ENSRROG00000034340)	LINGO1 (ENSRROG00000030171)
Rhinopithecus	ANCESTRAL SPECIES	75	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944.e.a.a.b.a #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00910000147679	ENSGT00390000003749 #20	ENSGT00910000147269	ENSGT00390000002517.a.a.c.a.n #22	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a.m.a #22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.b ##28	ENSGT00390000014594	ENSGT00390000006922.m.b.a.c.b.c	ENSGT00390000014781.g.b.a.b	ENSGT00390000014781.g.b.b	ENSGT01030000234558.C	ENSGT00940000156012	ENSGT00940000154654.ab.a
Black snub-nosed monkey	DUPLICATION
Black snub-nosed monkey	MODERN SPECIES	1633	GDF11 (ENSRBIG00000041780) #10	ENSRBIG00000039295 #11	ORMDL2 (ENSRBIG00000044250) #12	DNAJC14 (ENSRBIG00000033649) #13	ENSRBIG00000028585	MMP19 (ENSRBIG00000033077) #14	PYM1 (ENSRBIG00000033362) #15	DGKA (ENSRBIG00000036942) #16	PMEL (ENSRBIG00000027682) #17	CDK2 (ENSRBIG00000041957) #18	RAB5B (ENSRBIG00000013165) #19	ENSRBIG00000032084	SUOX (ENSRBIG00000035481) #20	IKZF4 (ENSRBIG00000036210) #21	ENSRBIG00000040056	ENSRBIG00000031927 #22	ERBB3 (ENSRBIG00000037848) #23	PA2G4 (ENSRBIG00000032144) ##24	ENSRBIG00000032989	ZC3H10 (ENSRBIG00000019615) #26	ESYT1 (ENSRBIG00000044819) #27	ENSRBIG00000031231 #28	ENSRBIG00000029231 ##28	SMARCC2 (ENSRBIG00000006698) #30	RNF41 (ENSRBIG00000038566) #31	ENSRBIG00000037580	NABP2 (ENSRBIG00000039231) #32	SLC39A5 (ENSRBIG00000033495) #33	ANKRD52 (ENSRBIG00000042462) #34	COQ10A (ENSRBIG00000026274) #35	CS (ENSRBIG00000032425) #36
Black snub-nosed monkey	MODERN SPECIES	784																ENSRBIG00000034876 #22	ENSRBIG00000001013 #22
Cercopithecinae	ANCESTRAL SPECIES	7	ENSGT00940000161052 #10	ENSGT00390000002944.e.a.a.b #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00910000147269	ENSGT00390000002517.a.a.c.a #22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT00900000143559	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a.b ##28	ENSGT00940000155746 #30	ENSGT00900000143705	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519	ENSGT00950000182908.B #34	ENSGT00940000160056 #35
Vervet Monkey	MODERN SPECIES	25	BSPH1 (ENSCSAG00000002916)	SULT2A1 (ENSCSAG00000002919)	CRX (ENSCSAG00000002921)	SELENOW (ENSCSAG00000002926)	ENSCSAG00000002928	EHD2 (ENSCSAG00000002930)	BICRA (ENSCSAG00000002933)	ENSCSAG00000002936	NAPA (ENSCSAG00000002939)	KPTN (ENSCSAG00000002944)	SLC8A2 (ENSCSAG00000002946)	MEIS3 (ENSCSAG00000002950)	DHX34 (ENSCSAG00000002965)	C5AR2 (ENSCSAG00000019638)	C5AR1 (ENSCSAG00000002973)	ENSCSAG00000019637 #22	CCDC9 (ENSCSAG00000002974)	BBC3 (ENSCSAG00000002981)	SAE1 (ENSCSAG00000002984)	ZC3H4 (ENSCSAG00000002989)	TMEM160 (ENSCSAG00000002993)	NPAS1 (ENSCSAG00000003006)	ARHGAP35 (ENSCSAG00000003015)	ENSCSAG00000019636	ENSCSAG00000003016	FKRP (ENSCSAG00000019635)	STRN4 (ENSCSAG00000003022)	PRKD2 (ENSCSAG00000003028)	DACT3 (ENSCSAG00000003035)	GNG8 (ENSCSAG00000003040)	PTGIR (ENSCSAG00000003043)
Cercopithecinae_a	ANCESTRAL SPECIES	7	ENSGT00390000002944.e.a.a.b #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00910000146124	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00910000147269	ENSGT00390000002517.a.a.c.a #22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT00900000143559	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a.b ##28	ENSGT00940000155746 #30	ENSGT00900000143705	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519	ENSGT00950000182908.B #34	ENSGT00940000160056 #35
Cercopithecinae_b	ANCESTRAL SPECIES	2	ENSGT00940000161052 #10	ENSGT00390000002944.e.a.a.b #11	ENSGT00950000183178.a #12	ENSGT00940000155637.s #13	ENSGT00390000016940.c.a	ENSGT00910000146124	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00910000147269	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a.b ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36
Cercopithecinae_d	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.a #22
Sooty mangabey	MODERN SPECIES	444	HS6ST3 (ENSCATG00000034180)	ENSCATG00000020783	OXGR1 (ENSCATG00000020401)	MBNL2 (ENSCATG00000040406) ##26	RAP2A (ENSCATG00000034241)	IPO5 (ENSCATG00000038175)	FARP1 (ENSCATG00000029998)	STK24 (ENSCATG00000027583)	SLC15A1 (ENSCATG00000028950)	DOCK9 (ENSCATG00000040587)	ENSCATG00000036378	GPR18 (ENSCATG00000018271)	GPR183 (ENSCATG00000018181)	ENSCATG00000007089	UBAC2 (ENSCATG00000001692)	ENSCATG00000022391 #22	TM9SF2 (ENSCATG00000030112)	CLYBL (ENSCATG00000034018)	ZIC5 (ENSCATG00000003226)	ZIC2 (ENSCATG00000035620)	ENSCATG00000034382	PCCA (ENSCATG00000034177)	TMTC4 (ENSCATG00000017163)	NALCN (ENSCATG00000041713)	ITGBL1 (ENSCATG00000037265)	FGF14 (ENSCATG00000041019)	TPP2 (ENSCATG00000029510)	METTL21C (ENSCATG00000039638)	CCDC168 (ENSCATG00000008978)	TEX30 (ENSCATG00000040140)	POGLUT2 (ENSCATG00000039993)
Olive baboon	DUPLICATION
Olive baboon	MODERN SPECIES	8	ENSPANG00000038899	MAP2K6 (ENSPANG00000020353)	ABCA5 (ENSPANG00000020348)	ENSPANG00000043574	ABCA10 (ENSPANG00000020347)	ABCA6 (ENSPANG00000020467)	ABCA9 (ENSPANG00000020486)	ABCA8 (ENSPANG00000020480)	FAM20A (ENSPANG00000020472)	PRKAR1A (ENSPANG00000020503)	WIPI1 (ENSPANG00000020502)	ARSG (ENSPANG00000020501)	SLC16A6 (ENSPANG00000020500)	AMZ2 (ENSPANG00000020498)	KPNA2 (ENSPANG00000020523)	ENSPANG00000030901 #22	ENSPANG00000046173	BPTF (ENSPANG00000020520)	NOL11 (ENSPANG00000020519)	PITPNC1 (ENSPANG00000020517)	PSMD12 (ENSPANG00000020562)	HELZ (ENSPANG00000020569)	CACNG1 (ENSPANG00000020568)	CACNG5 (ENSPANG00000020565)	PRKCA (ENSPANG00000020564)	APOH (ENSPANG00000020563)	CEP112 (ENSPANG00000020608)	AXIN2 (ENSPANG00000020613)	ENSPANG00000048052	RGS9 (ENSPANG00000020610)	ENSPANG00000034645
Olive baboon	DUPLICATION
Olive baboon	MODERN SPECIES	19	BLOC1S1 (ENSPANG00000044608)	RDH5 (ENSPANG00000004852) #8	CD63 (ENSPANG00000000448) #9	GDF11 (ENSPANG00000000449) #10	ENSPANG00000013149 #11	ORMDL2 (ENSPANG00000021746) #12	DNAJC14 (ENSPANG00000022087) #13	MMP19 (ENSPANG00000004177) #14	PYM1 (ENSPANG00000009562) #15	DGKA (ENSPANG00000019457) #16	PMEL (ENSPANG00000002381) #17	CDK2 (ENSPANG00000024987) #18	RAB5B (ENSPANG00000021075) #19	SUOX (ENSPANG00000029373) #20	IKZF4 (ENSPANG00000033363) #21	ENSPANG00000034033 #22	ERBB3 (ENSPANG00000016193) #23	PA2G4 (ENSPANG00000026387) ##24	ENSPANG00000031934	ZC3H10 (ENSPANG00000029620) #26	ESYT1 (ENSPANG00000017046) #27	MYL6B (ENSPANG00000003300) #28	ENSPANG00000010686 #29	SMARCC2 (ENSPANG00000021074) #30	RNF41 (ENSPANG00000034803) #31	NABP2 (ENSPANG00000026357) #32	SLC39A5 (ENSPANG00000004176) #33	ENSPANG00000039484	ANKRD52 (ENSPANG00000007981) #34	COQ10A (ENSPANG00000004851) #35	CS (ENSPANG00000009255) #36
Olive baboon	MODERN SPECIES		ENSPANG00000031127	RABGAP1L (ENSPANG00000006338)	ENSPANG00000009149	ENSPANG00000048108	MRPS14 (ENSPANG00000025213)	TNN (ENSPANG00000005095)	KIAA0040 (ENSPANG00000014835)	ENSPANG00000033478	TNR (ENSPANG00000010282)	ENSPANG00000045541	ENSPANG00000038725	COP1 (ENSPANG00000015165)	PAPPA2 (ENSPANG00000011979)	ASTN1 (ENSPANG00000015048)	BRINP2 (ENSPANG00000014999)	ENSPANG00000032451 #22	SEC16B (ENSPANG00000017268)	RASAL2 (ENSPANG00000026390)	ENSPANG00000029589	TEX35 (ENSPANG00000005098)	ANGPTL1 (ENSPANG00000017311)	RALGPS2 (ENSPANG00000001107)	FAM20B (ENSPANG00000013234)	TOR3A (ENSPANG00000005484)	ABL2 (ENSPANG00000015263)	SOAT1 (ENSPANG00000022548)	ENSPANG00000037477	AXDND1 (ENSPANG00000010748)	NPHS2 (ENSPANG00000015051)	TDRD5 (ENSPANG00000021218)	FAM163A (ENSPANG00000039302)
Macaca	ANCESTRAL SPECIES	6	ENSGT00940000161052 #10	ENSGT00390000002944.e.a.a.b #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00910000146124	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00910000147269	ENSGT00390000002517.a.a.c.a #22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT00900000143559.c	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a.b ##28	ENSGT00940000155746 #30	ENSGT00900000143705	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519	ENSGT00950000182908.B #34	ENSGT00940000160056 #35
Macaca_a	ANCESTRAL SPECIES	6	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00910000147269	ENSGT00390000002517.a.a.c.a #22	ENSGT00950000185738	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT00900000143559.c	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a.b ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519	ENSGT00950000182908.B #34	ENSGT00940000160056 #35
Rhesus	DUPLICATION
Rhesus	MODERN SPECIES	2	METTL7B (ENSMMUG00000058959)	ITGA7 (ENSMMUG00000013226) #7	RDH5 (ENSMMUG00000013228) #8	CD63 (ENSMMUG00000013232) #9	GDF11 (ENSMMUG00000006288) #10	DNAJC14 (ENSMMUG00000006293) #13	ORMDL2 (ENSMMUG00000053458) #12	ENSMMUG00000051937	MMP19 (ENSMMUG00000006295) #14	PYM1 (ENSMMUG00000011002) #15	DGKA (ENSMMUG00000018814) #16	PMEL (ENSMMUG00000018816) #17	RAB5B (ENSMMUG00000031853) #19	SUOX (ENSMMUG00000064364) #20	IKZF4 (ENSMMUG00000007523) #21	RPS26 (ENSMMUG00000058071) #22	ENSMMUG00000058015	ERBB3 (ENSMMUG00000020758) #23	ENSMMUG00000056126	ZC3H10 (ENSMMUG00000021084) #26	ESYT1 (ENSMMUG00000021979) #27	MYL6B (ENSMMUG00000005214) #28	MYL6 (ENSMMUG00000031838) ##28	SMARCC2 (ENSMMUG00000008273) #30	RNF41 (ENSMMUG00000064075) #31	NABP2 (ENSMMUG00000038453) #32	SLC39A5 (ENSMMUG00000008674) #33	ANKRD52 (ENSMMUG00000008679) #34	ENSMMUG00000059663	COQ10A (ENSMMUG00000031834) #35	CS (ENSMMUG00000002483) #36
Rhesus	MODERN SPECIES	14	PHF1 (ENSMMUG00000010649)	SYNGAP1 (ENSMMUG00000010659)	ZBTB9 (ENSMMUG00000029765)	BAK1 (ENSMMUG00000063304)	ENSMMUG00000019505	ENSMMUG00000052902	ENSMMUG00000058175	ITPR3 (ENSMMUG00000047729)	UQCC2 (ENSMMUG00000020703)	IP6K3 (ENSMMUG00000045656)	LEMD2 (ENSMMUG00000021734)	MLN (ENSMMUG00000021738)	GRM4 (ENSMMUG00000023046)	HMGA1 (ENSMMUG00000019529)	ENSMMUG00000019531	ENSMMUG00000029987 #22	NUDT3 (ENSMMUG00000019532)	PACSIN1 (ENSMMUG00000007811)	SPDEF (ENSMMUG00000056340)	ENSMMUG00000058767	ILRUN (ENSMMUG00000022824)	ENSMMUG00000063472	SNRPC (ENSMMUG00000000869)	BLTP3A (ENSMMUG00000021712)	TAF11 (ENSMMUG00000021715)	ANKS1A (ENSMMUG00000021718)	ENSMMUG00000060313	TCP11 (ENSMMUG00000021720)	SCUBE3 (ENSMMUG00000023557)	ZNF76 (ENSMMUG00000023559)	DEF6 (ENSMMUG00000023560)
Crab-eating macaque	DUPLICATION
Crab-eating macaque	MODERN SPECIES	2	RDH5 (ENSMFAG00000002032) #8	CD63 (ENSMFAG00000045733) #9	ENSMFAG00000045270 #11	ENSMFAG00000048555	ORMDL2 (ENSMFAG00000061489) #12	DNAJC14 (ENSMFAG00000040360) #13	MMP19 (ENSMFAG00000002663) #14	PYM1 (ENSMFAG00000003048) #15	DGKA (ENSMFAG00000042903) #16	PMEL (ENSMFAG00000041480) #17	CDK2 (ENSMFAG00000044700) #18	RAB5B (ENSMFAG00000029992) #19	SUOX (ENSMFAG00000039926) #20	IKZF4 (ENSMFAG00000002625) #21	ENSMFAG00000044598	RPS26 (ENSMFAG00000041709) #22	ENSMFAG00000050693	ERBB3 (ENSMFAG00000040171) #23	ENSMFAG00000042571 ##24	ENSMFAG00000032415	ENSMFAG00000051171	ZC3H10 (ENSMFAG00000027256) #26	ESYT1 (ENSMFAG00000035482) #27	MYL6B (ENSMFAG00000043999) #28	ENSMFAG00000033843 ##28	SMARCC2 (ENSMFAG00000031029) #30	RNF41 (ENSMFAG00000001215) #31	NABP2 (ENSMFAG00000000354) #32	SLC39A5 (ENSMFAG00000044988) #33	ENSMFAG00000052628	ANKRD52 (ENSMFAG00000037030) #34
Crab-eating macaque	MODERN SPECIES	14	SYNGAP1 (ENSMFAG00000041047)	ZBTB9 (ENSMFAG00000025074)	BAK1 (ENSMFAG00000029410)	EIF1 (ENSMFAG00000046072)	ENSMFAG00000037076	ITPR3 (ENSMFAG00000039709)	UQCC2 (ENSMFAG00000039620)	IP6K3 (ENSMFAG00000036096)	ENSMFAG00000001775	MLN (ENSMFAG00000032195)	GRM4 (ENSMFAG00000043495)	ENSMFAG00000059689	ENSMFAG00000001292	ENSMFAG00000065608	ENSMFAG00000064073	ENSMFAG00000028033 #22	NUDT3 (ENSMFAG00000042647)	ENSMFAG00000039924	PACSIN1 (ENSMFAG00000036381)	ENSMFAG00000057349	SPDEF (ENSMFAG00000031435)	ENSMFAG00000065156	ENSMFAG00000031764	BLTP3A (ENSMFAG00000000555)	TAF11 (ENSMFAG00000035760)	ANKS1A (ENSMFAG00000003052)	ENSMFAG00000065351	ENSMFAG00000050189	TCP11 (ENSMFAG00000003878)	ENSMFAG00000063658	SCUBE3 (ENSMFAG00000035997)
Pig-tailed macaque	DUPLICATION
Pig-tailed macaque	MODERN SPECIES	526	GDF11 (ENSMNEG00000033320) #10	ENSMNEG00000044633 #11	ORMDL2 (ENSMNEG00000017201) #12	DNAJC14 (ENSMNEG00000005979) #13	ENSMNEG00000041480	ENSMNEG00000033064	MMP19 (ENSMNEG00000016248) #14	PYM1 (ENSMNEG00000034677) #15	DGKA (ENSMNEG00000033490) #16	PMEL (ENSMNEG00000031719) #17	CDK2 (ENSMNEG00000044266) #18	RAB5B (ENSMNEG00000005338) #19	SUOX (ENSMNEG00000007804) #20	ENSMNEG00000042457	IKZF4 (ENSMNEG00000006819) #21	RPS26 (ENSMNEG00000039911) #22	ERBB3 (ENSMNEG00000030064) #23	ENSMNEG00000044000 ##24	ENSMNEG00000045402	ZC3H10 (ENSMNEG00000025282) #26	ESYT1 (ENSMNEG00000011748) #27	MYL6B (ENSMNEG00000034674) #28	ENSMNEG00000037322 ##28	SMARCC2 (ENSMNEG00000043890) #30	ENSMNEG00000024702	RNF41 (ENSMNEG00000029427) #31	NABP2 (ENSMNEG00000027879) #32	SLC39A5 (ENSMNEG00000031313) #33	ANKRD52 (ENSMNEG00000002356) #34	COQ10A (ENSMNEG00000040946) #35	CS (ENSMNEG00000035815) #36
Pig-tailed macaque	MODERN SPECIES	152							RIC1 (ENSMNEG00000022609)	ERMP1 (ENSMNEG00000028561)	MLANA (ENSMNEG00000031276)	ENSMNEG00000038006	IL33 (ENSMNEG00000041999)	TPD52L3 (ENSMNEG00000033267)	UHRF2 (ENSMNEG00000034080)	GLDC (ENSMNEG00000032546)	ENSMNEG00000033793	ENSMNEG00000031093 #22	KDM4C (ENSMNEG00000029324)	DMAC1 (ENSMNEG00000044495)	ENSMNEG00000030132	PTPRD (ENSMNEG00000036506)	ENSMNEG00000036773	TYRP1 (ENSMNEG00000035543)	LURAP1L (ENSMNEG00000029041)	ENSMNEG00000035930	MPDZ (ENSMNEG00000040228)	ENSMNEG00000035388	NFIB (ENSMNEG00000039065)	ENSMNEG00000005084	ZDHHC21 (ENSMNEG00000033895)	CER1 (ENSMNEG00000034249)	FREM1 (ENSMNEG00000034773)
Hominoidea	ANCESTRAL SPECIES	5	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944.e.a.a.a ##11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756.h.a #19	ENSGT00940000160756.i #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00940000156107 #23	ENSGT00940000154281.m.a #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a.b ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37
Hominidae	ANCESTRAL SPECIES	4	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944.e.a.a.a ##11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756.i #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00940000156107 #23	ENSGT00940000154281.m.a #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a.b ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37
Orangutan	MODERN SPECIES	3	BLOC1S1 (ENSPPYG00000004627)	RDH5 (ENSPPYG00000004628) #8	CD63 (ENSPPYG00000004629) #9	GDF11 (ENSPPYG00000039080) #10	SARNP (ENSPPYG00000004630) #13	ORMDL2 (ENSPPYG00000004631) #12	ENSPPYG00000040748	MMP19 (ENSPPYG00000004634) #14	ENSPPYG00000004635 #15	DGKA (ENSPPYG00000004636) #16	PMEL (ENSPPYG00000004637) #17	CDK2 (ENSPPYG00000004638) #18	RAB5B (ENSPPYG00000004639) #19	SUOX (ENSPPYG00000004640) #20	IKZF4 (ENSPPYG00000039619) #21	RPS26 (ENSPPYG00000004642) #22	ERBB3 (ENSPPYG00000004643) #23	PA2G4 (ENSPPYG00000025851) #24	RPL41 (ENSPPYG00000033815)	ZC3H10 (ENSPPYG00000004644) #26	ESYT1 (ENSPPYG00000004645) #27	MYL6B (ENSPPYG00000004646) #28	MYL6 (ENSPPYG00000004647) ##28	SMARCC2 (ENSPPYG00000004648) #30	RNF41 (ENSPPYG00000004649) #31	NABP2 (ENSPPYG00000004650) #32	SLC39A5 (ENSPPYG00000004651) #33	ENSPPYG00000031705	ANKRD52 (ENSPPYG00000004652) #34	COQ10A (ENSPPYG00000004653) #35	CS (ENSPPYG00000004654) #36
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	5	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944.e.a.a.a ##11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756.i #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00940000156107 #23	ENSGT00940000154281.m.a #24	ENSGT01060000249814	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a.b ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36
Gorilla	MODERN SPECIES	3	GDF11 (ENSGGOG00000014706) #10	SARNP (ENSGGOG00000013217) ##11	ORMDL2 (ENSGGOG00000013221) #12	DNAJC14 (ENSGGOG00000013222) #13	ENSGGOG00000022858	MMP19 (ENSGGOG00000013231) #14	PYM1 (ENSGGOG00000043246) #15	DGKA (ENSGGOG00000014039) #16	ENSGGOG00000037614 #17	ENSGGOG00000036657 #17	CDK2 (ENSGGOG00000002312) #18	ENSGGOG00000040719	ENSGGOG00000008325 #19	SUOX (ENSGGOG00000023990) #20	IKZF4 (ENSGGOG00000011558) #21	RPS26 (ENSGGOG00000011566) #22	ENSGGOG00000038358 #23	MYL6B (ENSGGOG00000003277) #28	ENSGGOG00000038677 ##28	SMARCC2 (ENSGGOG00000003282) #30	RNF41 (ENSGGOG00000011122) #31	NABP2 (ENSGGOG00000009050) #32	SLC39A5 (ENSGGOG00000009056) #33	ENSGGOG00000042517	ANKRD52 (ENSGGOG00000009065) #34	COQ10A (ENSGGOG00000009092) #35	CS (ENSGGOG00000009096) #36	CNPY2 (ENSGGOG00000009106) #37	PAN2 (ENSGGOG00000009115)	IL23A (ENSGGOG00000001663)	STAT2 (ENSGGOG00000006127)
Homo/Pan group	ANCESTRAL SPECIES	6	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944.e.a.a.a ##11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756.i #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00940000156107 #23	ENSGT00940000154281.m.a #24	ENSGT01060000249814	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a.b ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36
Human	MODERN SPECIES	3	RDH5 (ENSG00000135437) #8	CD63 (ENSG00000135404) #9	GDF11 (ENSG00000135414) #10	SARNP (ENSG00000205323) ##11	ENSG00000257390	ORMDL2 (ENSG00000123353) #12	DNAJC14 (ENSG00000135392) #13	MMP19 (ENSG00000123342) #14	PYM1 (ENSG00000170473) #15	DGKA (ENSG00000065357) #16	PMEL (ENSG00000185664) #17	CDK2 (ENSG00000123374) #18	RAB5B (ENSG00000111540) #19	SUOX (ENSG00000139531) #20	IKZF4 (ENSG00000123411) #21	RPS26 (ENSG00000197728) #22	ERBB3 (ENSG00000065361) #23	ENSG00000257411	PA2G4 (ENSG00000170515) #24	RPL41 (ENSG00000229117)	ESYT1 (ENSG00000139641) #27	ZC3H10 (ENSG00000135482) #26	MYL6B (ENSG00000196465) #28	MYL6 (ENSG00000092841) ##28	SMARCC2 (ENSG00000139613) #30	RNF41 (ENSG00000181852) #31	NABP2 (ENSG00000139579) #32	SLC39A5 (ENSG00000139540) #33	ANKRD52 (ENSG00000139645) #34	COQ10A (ENSG00000135469) #35	CS (ENSG00000062485) #36
Pan	ANCESTRAL SPECIES	4	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944.e.a.a.a ##11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756.i #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00940000156107 #23	ENSGT00940000154281.m.a #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a.b ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158.f #37
Chimpanzee	DUPLICATION
Chimpanzee	MODERN SPECIES	1	ENSPTRG00000040120	RAB18 (ENSPTRG00000002384)	PTCHD3 (ENSPTRG00000002383)	ENSPTRG00000050986	ENSPTRG00000041217	ACBD5 (ENSPTRG00000002380)	MASTL (ENSPTRG00000002379)	YME1L1 (ENSPTRG00000002378)	ANKRD26 (ENSPTRG00000002376)	ABI1 (ENSPTRG00000024219)	PDSS1 (ENSPTRG00000002374)	ENSPTRG00000049037	APBB1IP (ENSPTRG00000002373)	GAD2 (ENSPTRG00000002372)	MYO3A (ENSPTRG00000002371)	ENSPTRG00000052744 #22	GPR158 (ENSPTRG00000002369)	THNSL1 (ENSPTRG00000002368)	ENKUR (ENSPTRG00000002367)	PRTFDC1 (ENSPTRG00000002366)	ARHGAP21 (ENSPTRG00000002365)	ENSPTRG00000043370	ENSPTRG00000043362	KIAA1217 (ENSPTRG00000002362)	OTUD1 (ENSPTRG00000049721)	C10H10orf67 (ENSPTRG00000002360)	PTF1A (ENSPTRG00000048651)	MSRB2 (ENSPTRG00000029920)	ARMC3 (ENSPTRG00000002356)	PIP4K2A (ENSPTRG00000002355)	SPAG6 (ENSPTRG00000002354)
Chimpanzee	MODERN SPECIES	7	NFATC3 (ENSPTRG00000008260)	ENSPTRG00000047548	ENSPTRG00000042978	ESRP2 (ENSPTRG00000008261)	PLA2G15 (ENSPTRG00000008262)	SLC7A6 (ENSPTRG00000008263)	SLC7A6OS (ENSPTRG00000008264)	ENSPTRG00000048743	PRMT7 (ENSPTRG00000008265)	SMPD3 (ENSPTRG00000008267)	ZFP90 (ENSPTRG00000042517)	CDH3 (ENSPTRG00000008269)	ENSPTRG00000046847	CDH1 (ENSPTRG00000008270)	TANGO6 (ENSPTRG00000008272)	ENSPTRG00000045075 #22	HAS3 (ENSPTRG00000008273)	CHTF8 (ENSPTRG00000008274)	DERPC (ENSPTRG00000045012)	UTP4 (ENSPTRG00000008275)	SNTB2 (ENSPTRG00000008276)	VPS4A (ENSPTRG00000008277)	PDF (ENSPTRG00000048447)	COG8 (ENSPTRG00000008278)	NIP7 (ENSPTRG00000051089)	TMED6 (ENSPTRG00000008280)	TERF2 (ENSPTRG00000008281)	CYB5B (ENSPTRG00000008282)	NFAT5 (ENSPTRG00000008283)	NQO1 (ENSPTRG00000008284)	NOB1 (ENSPTRG00000008285)
Chimpanzee	MODERN SPECIES		ENSPTRG00000052416	EDARADD (ENSPTRG00000033991)	ERO1B (ENSPTRG00000002137)	GPR137B (ENSPTRG00000002136)	NID1 (ENSPTRG00000002135)	ENSPTRG00000049072	LYST (ENSPTRG00000002134)	GNG4 (ENSPTRG00000002133)	B3GALNT2 (ENSPTRG00000002132)	TBCE (ENSPTRG00000002131)	GGPS1 (ENSPTRG00000002130)	ARID4B (ENSPTRG00000002129)	RBM34 (ENSPTRG00000032432)	TOMM20 (ENSPTRG00000002127)	IRF2BP2 (ENSPTRG00000030114)	ENSPTRG00000051024 #22	TARBP1 (ENSPTRG00000002124)	COA6 (ENSPTRG00000002122)	ENSPTRG00000042958	SLC35F3 (ENSPTRG00000002121)	KCNK1 (ENSPTRG00000002120)	MAP3K21 (ENSPTRG00000002119)	ENSPTRG00000051060	PCNX2 (ENSPTRG00000002117)	ENSPTRG00000002116	MAP10 (ENSPTRG00000034279)	SIPA1L2 (ENSPTRG00000002114)	DISC1 (ENSPTRG00000002112)	TSNAX (ENSPTRG00000002111)	EGLN1 (ENSPTRG00000002110)	SPRTN (ENSPTRG00000002109)
Chimpanzee	MODERN SPECIES	3	RDH5 (ENSPTRG00000005060) #8	CD63 (ENSPTRG00000005062) #9	GDF11 (ENSPTRG00000005063) #10	SARNP (ENSPTRG00000029747) ##11	ORMDL2 (ENSPTRG00000045847) #12	DNAJC14 (ENSPTRG00000005064) #13	ENSPTRG00000046377	MMP19 (ENSPTRG00000005066) #14	PYM1 (ENSPTRG00000005067) #15	DGKA (ENSPTRG00000005068) #16	PMEL (ENSPTRG00000005069) #17	CDK2 (ENSPTRG00000005070) #18	RAB5B (ENSPTRG00000005071) #19	SUOX (ENSPTRG00000005073) #20	IKZF4 (ENSPTRG00000005074) #21	RPS26 (ENSPTRG00000005075) #22	ERBB3 (ENSPTRG00000005076) #23	PA2G4 (ENSPTRG00000045671) #24	ENSPTRG00000039769	ZC3H10 (ENSPTRG00000005078) #26	ESYT1 (ENSPTRG00000005079) #27	MYL6B (ENSPTRG00000023043) #28	MYL6 (ENSPTRG00000005080) ##28	SMARCC2 (ENSPTRG00000005081) #30	RNF41 (ENSPTRG00000005082) #31	NABP2 (ENSPTRG00000050931) #32	SLC39A5 (ENSPTRG00000005084) #33	ENSPTRG00000047758	ANKRD52 (ENSPTRG00000005085) #34	COQ10A (ENSPTRG00000005087) #35	CS (ENSPTRG00000005090) #36
Bonobo	DUPLICATION
Bonobo	MODERN SPECIES	21	GGH (ENSPPAG00000036800)	ENSPPAG00000032702	ENSPPAG00000035311	NKAIN3 (ENSPPAG00000034556)	ENSPPAG00000029474	ASPH (ENSPPAG00000036467)	ENSPPAG00000028711	CLVS1 (ENSPPAG00000033393)	ENSPPAG00000036715	CHD7 (ENSPPAG00000033330)	RAB2A (ENSPPAG00000030918)	CA8 (ENSPPAG00000037018)	ENSPPAG00000036688	TOX (ENSPPAG00000036301)	ENSPPAG00000032155	ENSPPAG00000035380 #22	NSMAF (ENSPPAG00000028955)	ENSPPAG00000038846	CYP7A1 (ENSPPAG00000043585)	ENSPPAG00000037576	ENSPPAG00000035036	ENSPPAG00000032162	BPNT2 (ENSPPAG00000042643)	ENSPPAG00000040415	ENSPPAG00000002731	PENK (ENSPPAG00000043514)	SDR16C5 (ENSPPAG00000032503)	ENSPPAG00000033262	PLAG1 (ENSPPAG00000043737)	MOS (ENSPPAG00000020866)	ENSPPAG00000005938
Bonobo	DUPLICATION
Bonobo	MODERN SPECIES	1	MKX (ENSPPAG00000041924)	ENSPPAG00000006842	RAB18 (ENSPPAG00000041625)	ENSPPAG00000042209	ENSPPAG00000042510	ENSPPAG00000028031	ACBD5 (ENSPPAG00000036984)	MASTL (ENSPPAG00000039332)	YME1L1 (ENSPPAG00000039964)	ANKRD26 (ENSPPAG00000042479)	ABI1 (ENSPPAG00000038643)	PDSS1 (ENSPPAG00000023441)	APBB1IP (ENSPPAG00000039998)	GAD2 (ENSPPAG00000033893)	MYO3A (ENSPPAG00000041293)	ENSPPAG00000017692 #22	GPR158 (ENSPPAG00000030587)	THNSL1 (ENSPPAG00000002058)	ENKUR (ENSPPAG00000036319)	PRTFDC1 (ENSPPAG00000036273)	ARHGAP21 (ENSPPAG00000033905)	ENSPPAG00000012197	KIAA1217 (ENSPPAG00000031597)	C10orf67 (ENSPPAG00000028736)	ENSPPAG00000027784	ARMC3 (ENSPPAG00000033845)	ENSPPAG00000044064	SPAG6 (ENSPPAG00000037020)	BMI1 (ENSPPAG00000034911)	COMMD3 (ENSPPAG00000027173)	EBLN1 (ENSPPAG00000009719)
Bonobo	MODERN SPECIES	3	CD63 (ENSPPAG00000040478) #9	GDF11 (ENSPPAG00000036686) #10	SARNP (ENSPPAG00000039513) ##11	ORMDL2 (ENSPPAG00000033682) #12	DNAJC14 (ENSPPAG00000025261) #13	ENSPPAG00000043408	ENSPPAG00000024120	MMP19 (ENSPPAG00000016475) #14	PYM1 (ENSPPAG00000043630) #15	DGKA (ENSPPAG00000009029) #16	PMEL (ENSPPAG00000034937) #17	CDK2 (ENSPPAG00000034672) #18	RAB5B (ENSPPAG00000035431) #19	SUOX (ENSPPAG00000006238) #20	IKZF4 (ENSPPAG00000043490) #21	ENSPPAG00000036020 #22	ERBB3 (ENSPPAG00000035409) #23	PA2G4 (ENSPPAG00000035411) #24	ENSPPAG00000043569	ZC3H10 (ENSPPAG00000023790) #26	ESYT1 (ENSPPAG00000033817) #27	MYL6B (ENSPPAG00000036884) #28	ENSPPAG00000001370 ##28	SMARCC2 (ENSPPAG00000028275) #30	RNF41 (ENSPPAG00000029406) #31	NABP2 (ENSPPAG00000000812) #32	SLC39A5 (ENSPPAG00000042690) #33	ENSPPAG00000024178	ANKRD52 (ENSPPAG00000017201) #34	COQ10A (ENSPPAG00000034058) #35	CS (ENSPPAG00000036762) #36
Gibbon	DUPLICATION
Gibbon	MODERN SPECIES	8	NAGPA (ENSNLEG00000009994)	ENSNLEG00000010001	ENSNLEG00000010012	ENSNLEG00000034454	ENSNLEG00000032011	ENSNLEG00000010017	ENSNLEG00000010025	ENSNLEG00000029800	METTL22 (ENSNLEG00000010027)	ABAT (ENSNLEG00000010038)	TMEM186 (ENSNLEG00000034845)	PMM2 (ENSNLEG00000033683)	CARHSP1 (ENSNLEG00000010069)	LITAFD (ENSNLEG00000031390)	USP7 (ENSNLEG00000010072)	ENSNLEG00000035653 #22	ENSNLEG00000010106	GRIN2A (ENSNLEG00000036288)	ATF7IP2 (ENSNLEG00000010115)	EMP2 (ENSNLEG00000032921)	ENSNLEG00000030893	TEKT5 (ENSNLEG00000010122)	ENSNLEG00000036271	NUBP1 (ENSNLEG00000010128)	TVP23A (ENSNLEG00000010137)	ENSNLEG00000010140	DEXI (ENSNLEG00000010148)	CLEC16A (ENSNLEG00000010152)	SOCS1 (ENSNLEG00000018452)	TNP2 (ENSNLEG00000018453)	PRM3 (ENSNLEG00000010159)
Gibbon	MODERN SPECIES	14	ENSNLEG00000007098	NDUFS1 (ENSNLEG00000007090)	INO80D (ENSNLEG00000032256)	NRP2 (ENSNLEG00000007071)	ENSNLEG00000036209	ENSNLEG00000007066	ICOS (ENSNLEG00000007065)	CTLA4 (ENSNLEG00000007059)	CD28 (ENSNLEG00000007057)	ENSNLEG00000029125	ENSNLEG00000035533	ENSNLEG00000030127	RAPH1 (ENSNLEG00000007048)	ENSNLEG00000007043	CYP20A1 (ENSNLEG00000035097)	ENSNLEG00000029450 #22	NBEAL1 (ENSNLEG00000007032)	CARF (ENSNLEG00000007026)	WDR12 (ENSNLEG00000007018)	ICA1L (ENSNLEG00000007012)	ENSNLEG00000027717	ENSNLEG00000029928	ENSNLEG00000007009	BMPR2 (ENSNLEG00000007004)	ENSNLEG00000031345	NOP58 (ENSNLEG00000007000)	SUMO1 (ENSNLEG00000006997)	KIAA2012 (ENSNLEG00000006992)	FZD7 (ENSNLEG00000035997)	CDK15 (ENSNLEG00000006990)	ALS2 (ENSNLEG00000006980)
Gibbon	DUPLICATION
Gibbon	MODERN SPECIES	1	CD63 (ENSNLEG00000017604) #9	ENSNLEG00000017601 #10	SARNP (ENSNLEG00000017599) ##11	ORMDL2 (ENSNLEG00000017596) #12	DNAJC14 (ENSNLEG00000017594) #13	ENSNLEG00000035450	ENSNLEG00000027602	MMP19 (ENSNLEG00000017589) #14	PYM1 (ENSNLEG00000017588) #15	DGKA (ENSNLEG00000017579) #16	PMEL (ENSNLEG00000017576) #17	CDK2 (ENSNLEG00000017574) #18	ENSNLEG00000017570 #19	SUOX (ENSNLEG00000017568) #20	IKZF4 (ENSNLEG00000017564) #21	ENSNLEG00000026867 #22	ERBB3 (ENSNLEG00000017554) #23	PA2G4 (ENSNLEG00000017544) #24	ENSNLEG00000029040	ESYT1 (ENSNLEG00000017542) #27	ENSNLEG00000017534 #30	ENSNLEG00000017533 #32	SLC39A5 (ENSNLEG00000017528) #33	ANKRD52 (ENSNLEG00000017523) #34	ENSNLEG00000017519 #35	CS (ENSNLEG00000017514) #36	CNPY2 (ENSNLEG00000017512) #37	PAN2 (ENSNLEG00000017499)	IL23A (ENSNLEG00000017498)	STAT2 (ENSNLEG00000017494)	APOF (ENSNLEG00000017492)
Gibbon	MODERN SPECIES	11	ENSNLEG00000000392	SH3PXD2B (ENSNLEG00000000384)	UBTD2 (ENSNLEG00000000381)	EFCAB9 (ENSNLEG00000000378)	STK10 (ENSNLEG00000000350)	ENSNLEG00000031400	FBXW11 (ENSNLEG00000000338)	ENSNLEG00000000336	ENSNLEG00000000334	NPM1 (ENSNLEG00000000304)	TLX3 (ENSNLEG00000000302)	RANBP17 (ENSNLEG00000000281)	ENSNLEG00000032964	GABRP (ENSNLEG00000000264)	KCNIP1 (ENSNLEG00000000256)	ENSNLEG00000030707 #22	ENSNLEG00000018628	ENSNLEG00000005166	LCP2 (ENSNLEG00000005113)	ENSNLEG00000005110	ENSNLEG00000032677	FOXI1 (ENSNLEG00000005109)	DOCK2 (ENSNLEG00000004980)	INSYN2B (ENSNLEG00000005107)	SPDL1 (ENSNLEG00000004947)	SLIT3 (ENSNLEG00000004908)	PANK3 (ENSNLEG00000004896)	FBLL1 (ENSNLEG00000031565)	RARS1 (ENSNLEG00000004848)	WWC1 (ENSNLEG00000026584)	TENM2 (ENSNLEG00000004813)
Strepsirrhini	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.a #22
Lemuriformes	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.a #22
Lemuriformes_a	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.a #22
Coquerels sifaka	DUPLICATION
Coquerels sifaka	MODERN SPECIES	584							ZNF22 (ENSPCOG00000011945)	RASSF4 (ENSPCOG00000016643)	TMEM72 (ENSPCOG00000021496)	ENSPCOG00000014505	ZNF32 (ENSPCOG00000023122)	ZNF485 (ENSPCOG00000018982)	ENSPCOG00000006302	ENSPCOG00000016514	FXYD4 (ENSPCOG00000016245)	ENSPCOG00000026019 #22	RASGEF1A (ENSPCOG00000020932)	CSGALNACT2 (ENSPCOG00000022414)	RET (ENSPCOG00000024033)
Coquerels sifaka	MODERN SPECIES	801	C11orf97 (ENSPCOG00000019915)	ANKRD49 (ENSPCOG00000022576)	MRE11 (ENSPCOG00000015583)	GPR83 (ENSPCOG00000022870)	IZUMO1R (ENSPCOG00000020918)	PANX1 (ENSPCOG00000014659)	ENSPCOG00000024084	HEPHL1 (ENSPCOG00000024694)	ENSPCOG00000024602	ENSPCOG00000016651	VSTM5 (ENSPCOG00000025355)	GATB (ENSPCOG00000021777)	FHIP1A (ENSPCOG00000023440)	ENSPCOG00000011844	ENSPCOG00000027945	ENSPCOG00000027843 #22	SH3D19 (ENSPCOG00000027680)	ENSPCOG00000027849	ENSPCOG00000018069	MAB21L2 (ENSPCOG00000009351)	LRBA (ENSPCOG00000003505)	DCLK2 (ENSPCOG00000024030)	IQCM (ENSPCOG00000026456)	NR3C2 (ENSPCOG00000022854)	ARHGAP10 (ENSPCOG00000027182)	ENSPCOG00000027630	TMEM184C (ENSPCOG00000025275)	EDNRA (ENSPCOG00000027555)	ENSPCOG00000010515	TTC29 (ENSPCOG00000025818)	POU4F2 (ENSPCOG00000011568)
Mouse lemur	DUPLICATION
Mouse lemur	MODERN SPECIES	3	ENSMICG00000027319	GFM2 (ENSMICG00000000749)	HEXB (ENSMICG00000032021)	ENC1 (ENSMICG00000000742)	ARHGEF28 (ENSMICG00000011823)	ENSMICG00000011813	ANKRA2 (ENSMICG00000035309)	ENSMICG00000017182	ENSMICG00000046550	TMEM174 (ENSMICG00000043697)	TMEM171 (ENSMICG00000009140)	FCHO2 (ENSMICG00000009119)	ZNF608 (ENSMICG00000000035)	GRAMD2B (ENSMICG00000007304)	ALDH7A1 (ENSMICG00000007316)	ENSMICG00000042695 #22	PHAX (ENSMICG00000029947)	ENSMICG00000045557	TEX43 (ENSMICG00000045095)	ENSMICG00000006795	LMNB1 (ENSMICG00000032820)	MARCHF3 (ENSMICG00000036064)	C5orf63 (ENSMICG00000032659)	MEGF10 (ENSMICG00000046751)	PRRC1 (ENSMICG00000009016)	CCDC192 (ENSMICG00000043066)	SLC12A2 (ENSMICG00000013234)	FBN2 (ENSMICG00000001587)	SLC27A6 (ENSMICG00000047567)	ISOC1 (ENSMICG00000003279)	ADAMTS19 (ENSMICG00000009660)
Mouse lemur	MODERN SPECIES	29	RDH5 (ENSMICG00000043819) #8	CD63 (ENSMICG00000038103) #9	GDF11 (ENSMICG00000030868) #10	ENSMICG00000010902 #11	ENSMICG00000027741 #12	DNAJC14 (ENSMICG00000010928) #13	ENSMICG00000038463	MMP19 (ENSMICG00000010950) #14	PYM1 (ENSMICG00000032962) #15	DGKA (ENSMICG00000010975) #16	PMEL (ENSMICG00000011000) #17	CDK2 (ENSMICG00000026391) #18	RAB5B (ENSMICG00000011086) #19	SUOX (ENSMICG00000043722) #20	IKZF4 (ENSMICG00000011029) #21	RPS26 (ENSMICG00000011041) #22	ENSMICG00000036425	ERBB3 (ENSMICG00000014325) #23	PA2G4 (ENSMICG00000044109) ##24	ENSMICG00000028771	ESYT1 (ENSMICG00000014395) #27	MYL6B (ENSMICG00000037488) #28	MYL6 (ENSMICG00000014433) #29	SMARCC2 (ENSMICG00000014448) #30	RNF41 (ENSMICG00000034714) #31	NABP2 (ENSMICG00000046909) #32	SLC39A5 (ENSMICG00000014494) #33	ANKRD52 (ENSMICG00000028491) #34	COQ10A (ENSMICG00000017658) #35	CS (ENSMICG00000017659) #36	CNPY2 (ENSMICG00000046113) #37
Euarchontoglires_A	ANCESTRAL SPECIES	5	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT01060000249814	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.b.a ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36
Glires	ANCESTRAL SPECIES	4	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT01060000249814	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.b.a ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36
Rodentia	ANCESTRAL SPECIES	5	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.b.a ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37
Rodentia_A	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.a #22
Sciuridae	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.a #22
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	17	TMEM213 (ENSSVLG00005015959)	ATP6V0A4 (ENSSVLG00005016026)	SVOPL (ENSSVLG00005016428)	TRIM24 (ENSSVLG00005016792)	AKR1D1 (ENSSVLG00005016853)	CREB3L2 (ENSSVLG00005017142)	DGKI (ENSSVLG00005017364)	PTN (ENSSVLG00005018673)	CHRM2 (ENSSVLG00005018715)	MTPN (ENSSVLG00005018736)	FAM180A (ENSSVLG00005018803)	SLC13A4 (ENSSVLG00005018865)	STMP1 (ENSSVLG00005019025)	NUP205 (ENSSVLG00005019057)	CNOT4 (ENSSVLG00005019157)	ENSSVLG00005019286 #22	ENSSVLG00005019349	STRA8 (ENSSVLG00005019507)	WDR91 (ENSSVLG00005019635)	ENSSVLG00005019779	ENSSVLG00005019848	AGBL3 (ENSSVLG00005019980)	CALD1 (ENSSVLG00005020365)	ENSSVLG00005020758	ENSSVLG00005020785	AKR1B10 (ENSSVLG00005020801)	ENSSVLG00005020910	ENSSVLG00005020951	SLC35B4 (ENSSVLG00005021054)	LRGUK (ENSSVLG00005021134)	EXOC4 (ENSSVLG00005021457)
Eurasian red squirrel	MODERN SPECIES	14	RDH5 (ENSSVLG00005002174) #8	CD63 (ENSSVLG00005002220) #9	GDF11 (ENSSVLG00005002247) #10	ENSSVLG00005002293 #11	ORMDL2 (ENSSVLG00005002360) #12	ENSSVLG00005002376 #13	ENSSVLG00005002403	MMP19 (ENSSVLG00005002420) #14	PYM1 (ENSSVLG00005002452) #15	DGKA (ENSSVLG00005002491) #16	PMEL (ENSSVLG00005002540) #17	CDK2 (ENSSVLG00005002635) #18	RAB5B (ENSSVLG00005002700) #19	SUOX (ENSSVLG00005002732) #20	IKZF4 (ENSSVLG00005002765) #21	RPS26 (ENSSVLG00005002809) #22	ERBB3 (ENSSVLG00005002867) #23	PA2G4 (ENSSVLG00005003043) ##24	ENSSVLG00005006677	ZC3H10 (ENSSVLG00005006703) #26	ESYT1 (ENSSVLG00005006727) #27	ENSSVLG00005006773 #28	MYL6 (ENSSVLG00005006811) ##28	SMARCC2 (ENSSVLG00005006945) #30	ENSSVLG00005007088 #31	NABP2 (ENSSVLG00005007154) #32	SLC39A5 (ENSSVLG00005007185) #33	ANKRD52 (ENSSVLG00005007258) #34	ENSSVLG00005007322 #35	ENSSVLG00005007387 #36	CNPY2 (ENSSVLG00005007500) #37
Rodentia_B	ANCESTRAL SPECIES	3	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.b.a ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37
Kangaroo rat	MODERN SPECIES	322	Bloc1s1 (ENSDORG00000014610)	Cd63 (ENSDORG00000014613) #9	Gdf11 (ENSDORG00000013875) #10	Sarnp (ENSDORG00000001065) #11	Ormdl2 (ENSDORG00000024476) #12	Dnajc14 (ENSDORG00000001069) #13	Tmem198b (ENSDORG00000029926)	Mmp19 (ENSDORG00000001071) #14	Pym1 (ENSDORG00000029448) #15	Dgka (ENSDORG00000005880) #16	Pmel (ENSDORG00000005882) #17	Cdk2 (ENSDORG00000008276) #18	Rab5b (ENSDORG00000025063) #19	Suox (ENSDORG00000029031) #20	Ikzf4 (ENSDORG00000015397) #21	Rps26 (ENSDORG00000001151) #22	Erbb3 (ENSDORG00000001076) #23	Pa2g4 (ENSDORG00000001080) ##24	ENSDORG00000023599	Zc3h10 (ENSDORG00000001081) #26	Esyt1 (ENSDORG00000001082) #27	Myl6b (ENSDORG00000001083) #28	ENSDORG00000001084 ##28	Smarcc2 (ENSDORG00000001085) #30	Rnf41 (ENSDORG00000012935) #31	Nabp2 (ENSDORG00000012936) #32	Slc39a5 (ENSDORG00000012941) #33	Ankrd52 (ENSDORG00000012944) #34	Coq10a (ENSDORG00000012947) #35	ENSDORG00000012948 #36	Cnpy2 (ENSDORG00000012950) #37
Myomorpha	ANCESTRAL SPECIES	2	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.b.a ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37
Muroidea	ANCESTRAL SPECIES	5	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.b.a ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37
Muroidea_A	ANCESTRAL SPECIES	22	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.b.a ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37
Cricetidae	ANCESTRAL SPECIES	21	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.b.a ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37	ENSGT00390000013978.d
Cricetinae	ANCESTRAL SPECIES	22	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.b.a ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37	ENSGT00390000013978.d
Golden Hamster	MODERN SPECIES	710	Bloc1s1 (ENSMAUG00000019717)	Cd63 (ENSMAUG00000019413) #9	Gdf11 (ENSMAUG00000011796) #10	Sarnp (ENSMAUG00000005256) #11	Ormdl2 (ENSMAUG00000010347) #12	Dnajc14 (ENSMAUG00000000612) #13	Tmem198b (ENSMAUG00000009767)	Mmp19 (ENSMAUG00000020228) #14	Pym1 (ENSMAUG00000007318) #15	Dgka (ENSMAUG00000018408) #16	Pmel (ENSMAUG00000017353) #17	Cdk2 (ENSMAUG00000019327) #18	Rab5b (ENSMAUG00000011613) #19	Suox (ENSMAUG00000012561) #20	Ikzf4 (ENSMAUG00000016146) #21	Rps26 (ENSMAUG00000007947) #22	Pa2g4 (ENSMAUG00000011829) ##24	ENSMAUG00000001917	Zc3h10 (ENSMAUG00000008505) #26	Esyt1 (ENSMAUG00000009823) #27	Myl6b (ENSMAUG00000019890) #28	ENSMAUG00000019259 ##28	Smarcc2 (ENSMAUG00000001032) #30	Rnf41 (ENSMAUG00000000490) #31	Nabp2 (ENSMAUG00000002611) #32	Slc39a5 (ENSMAUG00000009609) #33	Ankrd52 (ENSMAUG00000016598) #34	Coq10a (ENSMAUG00000010816) #35	ENSMAUG00000020525 #36	Cnpy2 (ENSMAUG00000001150) #37	Pan2 (ENSMAUG00000012602)
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	54	Tsga13 (ENSCGRG00001014622)	Klf14 (ENSCGRG00001004533)	Mkln1 (ENSCGRG00001018545)	Podxl (ENSCGRG00001023997)	Plxna4 (ENSCGRG00001000386)	ENSCGRG00001012129	Chchd3 (ENSCGRG00001024181)	Exoc4 (ENSCGRG00001015281)	ENSCGRG00001023326	Slc35b4 (ENSCGRG00001007188)	Akr1b3 (ENSCGRG00001022690)	AKR1B8 (ENSCGRG00001018111)	ENSCGRG00001020786	ENSCGRG00001011866	Bpgm (ENSCGRG00001013509)	ENSCGRG00001005545 #22	Cald1 (ENSCGRG00001011190)	Agbl3 (ENSCGRG00001001010)	Tmem140 (ENSCGRG00001003276)	Cyren (ENSCGRG00001018489)	Wdr91 (ENSCGRG00001021871)	Stra8 (ENSCGRG00001011632)	Slc23a4 (ENSCGRG00001022511)	Cnot4 (ENSCGRG00001014651)	Nup205 (ENSCGRG00001015399)	Slc13a4 (ENSCGRG00001024572)	Fam180a (ENSCGRG00001024856)	Mtpn (ENSCGRG00001005201)	Chrm2 (ENSCGRG00001011552)	Ptn (ENSCGRG00001015713)	Dgki (ENSCGRG00001004925)
Chinese hamster chok1gshd	MODERN SPECIES	352	Rdh5 (ENSCGRG00001000402) #8	Cd63 (ENSCGRG00001018763) #9	Gdf11 (ENSCGRG00001010095) #10	ENSCGRG00001018129 #11	Ormdl2 (ENSCGRG00001024237) #12	ENSCGRG00001009540 #13	Tmem198b (ENSCGRG00001010155)	Mmp19 (ENSCGRG00001009536) #14	ENSCGRG00001018051 #15	Dgka (ENSCGRG00001013601) #16	Pmel (ENSCGRG00001010954) #17	Cdk2 (ENSCGRG00001013650) #18	Rab5b (ENSCGRG00001000428) #19	Suox (ENSCGRG00001022965) #20	Ikzf4 (ENSCGRG00001013051) #21	ENSCGRG00001011851 #22	Erbb3 (ENSCGRG00001001394) #23	Pa2g4 (ENSCGRG00001015234) ##24	ENSCGRG00001000863	Zc3h10 (ENSCGRG00001004310) #26	Esyt1 (ENSCGRG00001017349) #27	Myl6b (ENSCGRG00001019820) #28	ENSCGRG00001012450 ##28	Smarcc2 (ENSCGRG00001008769) #30	Rnf41 (ENSCGRG00001013332) #31	Nabp2 (ENSCGRG00001022709) #32	Slc39a5 (ENSCGRG00001004371) #33	Ankrd52 (ENSCGRG00001021056) #34	ENSCGRG00001023374	Coq10a (ENSCGRG00001023064) #35	ENSCGRG00001012140 #36
Cricetidae_B	ANCESTRAL SPECIES	35	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.b.a ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	9	Rdh5 (ENSPEMG00000017945) #8	Cd63 (ENSPEMG00000015664) #9	Gdf11 (ENSPEMG00000001312) #10	Sarnp (ENSPEMG00000000923) #11	Ormdl2 (ENSPEMG00000016964) #12	Dnajc14 (ENSPEMG00000013016) #13	Tmem198b (ENSPEMG00000018605)	Mmp19 (ENSPEMG00000015034) #14	Pym1 (ENSPEMG00000009372) #15	Dgka (ENSPEMG00000015750) #16	Pmel (ENSPEMG00000011719) #17	Cdk2 (ENSPEMG00000009789) #18	ENSPEMG00000030783 #19	Suox (ENSPEMG00000015726) #20	Ikzf4 (ENSPEMG00000009219) #21	Rps26 (ENSPEMG00000008549) #22	Erbb3 (ENSPEMG00000008685) #23	Pa2g4 (ENSPEMG00000013344) ##24	ENSPEMG00000030589	Zc3h10 (ENSPEMG00000008278) #26	Esyt1 (ENSPEMG00000009956) #27	Myl6b (ENSPEMG00000015424) #28	ENSPEMG00000015822 ##28	Smarcc2 (ENSPEMG00000016959) #30	Rnf41 (ENSPEMG00000016813) #31	Nabp2 (ENSPEMG00000013415) #32	Slc39a5 (ENSPEMG00000016720) #33	Ankrd52 (ENSPEMG00000009597) #34	Coq10a (ENSPEMG00000011054) #35	Cnpy2 (ENSPEMG00000015275) #37	Pan2 (ENSPEMG00000018505)
Northern American deer mouse	MODERN SPECIES		Pgm5 (ENSPEMG00000020205)	Cbwd1 (ENSPEMG00000000396)	Dock8 (ENSPEMG00000014001)	Kank1 (ENSPEMG00000013916)	Dmrt1 (ENSPEMG00000019943)	Dmrt3 (ENSPEMG00000019990)	Dmrt2 (ENSPEMG00000019767)	Smarca2 (ENSPEMG00000019821)	ENSPEMG00000021666	Vldlr (ENSPEMG00000022250)	Kcnv2 (ENSPEMG00000020138)	ENSPEMG00000030423	ENSPEMG00000019340	Rfx3 (ENSPEMG00000019731)	Glis3 (ENSPEMG00000020002)	ENSPEMG00000004286 #22	Slc1a1 (ENSPEMG00000009611)	ENSPEMG00000021571	Spata6l (ENSPEMG00000023122)	Plpp6 (ENSPEMG00000007181)	Cdc37l1 (ENSPEMG00000000344)	Ak3 (ENSPEMG00000022781)	Rcl1 (ENSPEMG00000023275)	Jak2 (ENSPEMG00000022083)	ENSPEMG00000023396	Rln1 (ENSPEMG00000022594)	Plgrkt (ENSPEMG00000022507)	Cd274 (ENSPEMG00000022427)	Pdcd1lg2 (ENSPEMG00000021972)	Ric1 (ENSPEMG00000022073)	Ermp1 (ENSPEMG00000022988)
Murinae	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.a #22
Mus	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.a #22
Mus_A	ANCESTRAL SPECIES	11	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT00900000143379	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a #29	ENSGT00940000155746 #30	ENSGT00530000063647.B.w #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813.s #36
Ryukyu mouse	MODERN SPECIES	1	Rdh5 (MGP_CAROLIEiJ_G0015961) #8	Cd63 (MGP_CAROLIEiJ_G0015960) #9	Gdf11 (MGP_CAROLIEiJ_G0015959) #10	Sarnp (MGP_CAROLIEiJ_G0015958) #11	MGP_CAROLIEiJ_G0015957 #12	MGP_CAROLIEiJ_G0015956 #13	Tmem198b (MGP_CAROLIEiJ_G0015955)	Mmp19 (MGP_CAROLIEiJ_G0015954) #14	Pym1 (MGP_CAROLIEiJ_G0015953) #15	Dgka (MGP_CAROLIEiJ_G0015952) #16	Pmel (MGP_CAROLIEiJ_G0015951) #17	Cdk2 (MGP_CAROLIEiJ_G0015950) #18	MGP_CAROLIEiJ_G0015949 #19	Suox (MGP_CAROLIEiJ_G0015948) #20	Ikzf4 (MGP_CAROLIEiJ_G0015947) #21	Rps26 (MGP_CAROLIEiJ_G0015946) #22	Erbb3 (MGP_CAROLIEiJ_G0015945) #23	Pa2g4 (MGP_CAROLIEiJ_G0015944) ##24	Rpl41 (MGP_CAROLIEiJ_G0015943)	Zc3h10 (MGP_CAROLIEiJ_G0015942) #26	Esyt1 (MGP_CAROLIEiJ_G0015941) #27	Myl6b (MGP_CAROLIEiJ_G0015940) #28	MGP_CAROLIEiJ_G0015939 ##28	Smarcc2 (MGP_CAROLIEiJ_G0015938) #30	Rnf41 (MGP_CAROLIEiJ_G0015937) #31	Nabp2 (MGP_CAROLIEiJ_G0015936) #32	Slc39a5 (MGP_CAROLIEiJ_G0015935) #33	Ankrd52 (MGP_CAROLIEiJ_G0015934) #34	Coq10a (MGP_CAROLIEiJ_G0015933) #35	Cs (MGP_CAROLIEiJ_G0015932) #36	Cnpy2 (MGP_CAROLIEiJ_G0015931) #37
Mus_B	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.a #22
Mouse	MODERN SPECIES	1	Rdh5 (ENSMUSG00000025350) #8	Cd63 (ENSMUSG00000025351) #9	Gdf11 (ENSMUSG00000025352) #10	Ormdl2 (ENSMUSG00000025353) #12	Sarnp (ENSMUSG00000078427) #11	Dnajc14 (ENSMUSG00000025354) #13	Tmem198b (ENSMUSG00000047090)	Mmp19 (ENSMUSG00000025355) #14	Pym1 (ENSMUSG00000064030) #15	Dgka (ENSMUSG00000025357) #16	Pmel (ENSMUSG00000025359) #17	Cdk2 (ENSMUSG00000025358) #18	Rab5b (ENSMUSG00000000711) #19	Suox (ENSMUSG00000049858) #20	Ikzf4 (ENSMUSG00000002578) #21	Rps26 (ENSMUSG00000025362) #22	Erbb3 (ENSMUSG00000018166) #23	Pa2g4 (ENSMUSG00000025364) ##24	Rpl41 (ENSMUSG00000093674)	Zc3h10 (ENSMUSG00000039810) #26	Esyt1 (ENSMUSG00000025366) #27	Myl6b (ENSMUSG00000039824) #28	Myl6 (ENSMUSG00000090841) #29	Smarcc2 (ENSMUSG00000025369) #30	Rnf41 (ENSMUSG00000025373) #31	Nabp2 (ENSMUSG00000025374) #32	Slc39a5 (ENSMUSG00000039878) #33	Ankrd52 (ENSMUSG00000014498) #34	Coq10a (ENSMUSG00000039914) #35	Cs (ENSMUSG00000005683) #36	Cnpy2 (ENSMUSG00000025381) #37
Mus_C	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.a #22
Steppe mouse	MODERN SPECIES	2797									Themis2 (ENSMSIG00000008497)	Rpa2 (ENSMSIG00000008505)	Smpdl3b (ENSMSIG00000008523)	Eya3 (ENSMSIG00000008546)	Xkr8 (ENSMSIG00000008821)	Ptafr (ENSMSIG00000008840)	Dnajc8 (ENSMSIG00000008847)	ENSMSIG00000009011 #22	Atpif1 (ENSMSIG00000009020)	Sesn2 (ENSMSIG00000009040)	Med18 (ENSMSIG00000009082)	Phactr4 (ENSMSIG00000009106)	Rcc1 (ENSMSIG00000009244)	ENSMSIG00000009341	Rab42 (ENSMSIG00000009484)	Taf12 (ENSMSIG00000009505)	Gmeb1 (ENSMSIG00000009569)	ENSMSIG00000009595	ENSMSIG00000009602	Oprd1 (ENSMSIG00000009620)	Epb41 (ENSMSIG00000009639)	ENSMSIG00000012064	Tmem200b (ENSMSIG00000012073)
Rat	DUPLICATION
Rat	MODERN SPECIES	17	ENSRNOG00000031425	Lrig3 (ENSRNOG00000007654)	RGD1564306 (ENSRNOG00000032335)	Atp23 (ENSRNOG00000045629)	Ctdsp2 (ENSRNOG00000068220)	Avil (ENSRNOG00000050419)	Tsfm (ENSRNOG00000048843)	Eef1akmt3 (ENSRNOG00000047631)	Mettl1 (ENSRNOG00000047895)	Cyp27b1 (ENSRNOG00000046214)	AABR07057423.1 (ENSRNOG00000046245)	Cdk4 (ENSRNOG00000025602)	Tspan31 (ENSRNOG00000025592)	Agap2 (ENSRNOG00000025584)	Os9 (ENSRNOG00000025570)	RGD1565117 (ENSRNOG00000033161) #22	B4galnt1 (ENSRNOG00000004839)	Slc26a10 (ENSRNOG00000029465)	Arhgef25 (ENSRNOG00000005034)	Dtx3 (ENSRNOG00000005129)	Pip4k2c (ENSRNOG00000005138)	Kif5a (ENSRNOG00000005299)	ENSRNOG00000069110	Dctn2 (ENSRNOG00000025481)	Mbd6 (ENSRNOG00000006209)	Ddit3 (ENSRNOG00000006789)	Mars1 (ENSRNOG00000025459)	Arhgap9 (ENSRNOG00000006946)	Gli1 (ENSRNOG00000025120)	Inhbe (ENSRNOG00000007601)	Inhbc (ENSRNOG00000007700)
Rat	MODERN SPECIES	46	Pls3 (ENSRNOG00000027520)	AABR07041089.1 (ENSRNOG00000018923)	Luzp4 (ENSRNOG00000069107)	Lrch2 (ENSRNOG00000029582)	Il13ra2 (ENSRNOG00000032973)	Htr2c (ENSRNOG00000030877)	ENSRNOG00000065464	ENSRNOG00000065631	Amot (ENSRNOG00000007345)	Lhfpl1 (ENSRNOG00000027601)	Rtl4 (ENSRNOG00000031638)	Trpc5os (ENSRNOG00000064383)	Trpc5 (ENSRNOG00000027233)	LOC108349244 (ENSRNOG00000005753)	Alg13 (ENSRNOG00000065758)	LOC100361854 (ENSRNOG00000029512) #22	LOC100361756 (ENSRNOG00000051310)	AABR07040944.1 (ENSRNOG00000005430)	LOC108349189 (ENSRNOG00000067072)	Dcx (ENSRNOG00000047712)	Capn6 (ENSRNOG00000004882)	Pak3 (ENSRNOG00000004676)	Chrdl1 (ENSRNOG00000004330)	Rtl9 (ENSRNOG00000049853)	Ammecr1 (ENSRNOG00000022166)	Tmem164 (ENSRNOG00000012787)	LOC103690889 (ENSRNOG00000066509)	Acsl4 (ENSRNOG00000019180)	Kcne5 (ENSRNOG00000019176)	Nxt2 (ENSRNOG00000019168)	Gucy2f (ENSRNOG00000019086)
Laurasiatheria	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.a #22
Laurasiatheria_a	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.a #22
Artiodactyla	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.a #22
Artiodactyla_a	ANCESTRAL SPECIES	5	ENSGT00940000156832.p.a #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00910000147679	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.b ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36
Camelidae	ANCESTRAL SPECIES	79	ENSGT00940000161168 #8	ENSGT00940000156832.p.a #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.b.a ##28	ENSGT01030000234570.d.b.a.a.a.b.b ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000164642
Arabian camel	MODERN SPECIES	3	RDH5 (ENSCDRG00005004052) #8	CD63 (ENSCDRG00005004124) #9	GDF11 (ENSCDRG00005004159) #10	SARNP (ENSCDRG00005004203) #11	ORMDL2 (ENSCDRG00005004240) #12	DNAJC14 (ENSCDRG00005004270) #13	ENSCDRG00005004301	MMP19 (ENSCDRG00005004332) #14	PYM1 (ENSCDRG00005004363) #15	DGKA (ENSCDRG00005004407) #16	PMEL (ENSCDRG00005004512) #17	CDK2 (ENSCDRG00005004824) #18	RAB5B (ENSCDRG00005004947) #19	SUOX (ENSCDRG00005004981) #20	IKZF4 (ENSCDRG00005005019) #21	RPS26 (ENSCDRG00005005104) #22	ERBB3 (ENSCDRG00005005154) #23	ENSCDRG00005005523 #24	ENSCDRG00005005546	ZC3H10 (ENSCDRG00005005557) #26	ESYT1 (ENSCDRG00005005575) #27	ENSCDRG00005005619	MYL6B (ENSCDRG00005005633) #28	MYL6 (ENSCDRG00005005699) ##28	SMARCC2 (ENSCDRG00005005840) #30	RNF41 (ENSCDRG00005005957) #31	NABP2 (ENSCDRG00005006006) #32	SLC39A5 (ENSCDRG00005006036) #33	ANKRD52 (ENSCDRG00005006085) #34	COQ10A (ENSCDRG00005006113) #35	CS (ENSCDRG00005006204) #36
Artiodactyla_b	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.a #22
Cetacea	ANCESTRAL SPECIES	8	ENSGT00940000161168 #8	ENSGT00940000156832.q #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637.d.a #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00390000002517.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a #29	ENSGT01030000234570.d.b.a.a.a.b.a.b.b ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519	ENSGT00950000182908.B #34	ENSGT00940000160056 #35
Odontoceti	ANCESTRAL SPECIES	7	ENSGT00940000161168 #8	ENSGT00940000156832.q #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637.d.a #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756.c.a #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00390000002517.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a #29	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36
Odontoceti_a	ANCESTRAL SPECIES	6	ENSGT00940000161168 #8	ENSGT00940000156832.q #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637.d.a #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756.c.a #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00390000002517.b.hb ##22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a #29	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37
Odontoceti_b	ANCESTRAL SPECIES	7	ENSGT00940000161168 #8	ENSGT00940000156832.q #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637.d.a #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756.c.a #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00390000002517.b.hb ##22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a #29	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37
Vaquita	DUPLICATION
Vaquita	MODERN SPECIES	1	RDH5 (ENSPSNG00000012085) #8	CD63 (ENSPSNG00000012022) #9	GDF11 (ENSPSNG00000011979) #10	SARNP (ENSPSNG00000011927) #11	ORMDL2 (ENSPSNG00000011833) #12	DNAJC14 (ENSPSNG00000011754) #13	ENSPSNG00000011718	MMP19 (ENSPSNG00000011671) #14	PYM1 (ENSPSNG00000011582) #15	DGKA (ENSPSNG00000011462) #16	PMEL (ENSPSNG00000011151) #17	CDK2 (ENSPSNG00000011014) #18	ENSPSNG00000010918 #19	SUOX (ENSPSNG00000010858) #20	IKZF4 (ENSPSNG00000010678) #21	ENSPSNG00000010622 #22	ERBB3 (ENSPSNG00000009983) #23	PA2G4 (ENSPSNG00000009869) #24	ENSPSNG00000009824	ZC3H10 (ENSPSNG00000009797) #26	ESYT1 (ENSPSNG00000009666) #27	MYL6B (ENSPSNG00000009322) #28	SMARCC2 (ENSPSNG00000009047) #30	RNF41 (ENSPSNG00000008952) #31	NABP2 (ENSPSNG00000008913) #32	SLC39A5 (ENSPSNG00000008839) #33	ANKRD52 (ENSPSNG00000008780) #34	COQ10A (ENSPSNG00000008712) #35	CS (ENSPSNG00000008567) #36	CNPY2 (ENSPSNG00000008498) #37	PAN2 (ENSPSNG00000008437)
Vaquita	MODERN SPECIES	18	PMS1 (ENSPSNG00000003477)	ENSPSNG00000003553 ##12	OSGEPL1 (ENSPSNG00000003595)	ANKAR (ENSPSNG00000003641)	ASDURF (ENSPSNG00000003690)	ASNSD1 (ENSPSNG00000003732)	ENSPSNG00000003748	ENSPSNG00000003760	SLC40A1 (ENSPSNG00000003778)	ENSPSNG00000003805	WDR75 (ENSPSNG00000003840)	COL5A2 (ENSPSNG00000003919)	COL3A1 (ENSPSNG00000004016)	ENSPSNG00000004049	GULP1 (ENSPSNG00000004089)	ENSPSNG00000004106 #22	ENSPSNG00000004128	TFPI (ENSPSNG00000004167)	CALCRL (ENSPSNG00000004200)	ZSWIM2 (ENSPSNG00000004240)	ITGAV (ENSPSNG00000004427)	ZC3H15 (ENSPSNG00000004633)	ENSPSNG00000004659	ENSPSNG00000004689	FSIP2 (ENSPSNG00000004740)	ENSPSNG00000004786	ZNF804A (ENSPSNG00000004794)	NUP35 (ENSPSNG00000004839)	DUSP19 (ENSPSNG00000004880)	NCKAP1 (ENSPSNG00000005007)	FRZB (ENSPSNG00000005124)
Dolphin	MODERN SPECIES	1830									PYM1 (ENSTTRG00000014971) #15	DGKA (ENSTTRG00000014975) #16	PMEL (ENSTTRG00000014984) #17	CDK2 (ENSTTRG00000014995) #18	RAB5B (ENSTTRG00000015001) #19	SUOX (ENSTTRG00000015003) #20	IKZF4 (ENSTTRG00000015009) #21	RPS26 (ENSTTRG00000015012) #22
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES	17	ITGA7 (ENSPCTG00005007139) #7	BLOC1S1 (ENSPCTG00005007040)	RDH5 (ENSPCTG00005007009) #8	CD63 (ENSPCTG00005006963) #9	GDF11 (ENSPCTG00005006946) #10	SARNP (ENSPCTG00005006888) #11	ORMDL2 (ENSPCTG00005006849) #12	ENSPCTG00005006826 #13	PYM1 (ENSPCTG00005006774) #15	DGKA (ENSPCTG00005006704) #16	PMEL (ENSPCTG00005006620) #17	CDK2 (ENSPCTG00005006312) #18	RAB5B (ENSPCTG00005006228) #19	SUOX (ENSPCTG00005006172) #20	IKZF4 (ENSPCTG00005020456) #21	ENSPCTG00005020413 #22	TIMELESS (ENSPCTG00005020308)	MIP (ENSPCTG00005020265)	SPRYD4 (ENSPCTG00005020245)	GLS2 (ENSPCTG00005020110)	ENSPCTG00005020099	ENSPCTG00005020067	RBMS2 (ENSPCTG00005019997)	BAZ2A (ENSPCTG00005019466)	ATP5F1B (ENSPCTG00005019389)	PTGES3 (ENSPCTG00005019303)	NACA (ENSPCTG00005019191)	PRIM1 (ENSPCTG00005019146)	HSD17B6 (ENSPCTG00005019089)	SDR9C7 (ENSPCTG00005019042)	ENSPCTG00005018975
Sperm whale	MODERN SPECIES	13	CHM (ENSPCTG00005018395)	ENSPCTG00005018358	ZNF711 (ENSPCTG00005018257)	ENSPCTG00005018213	ENSPCTG00005018126	APOOL (ENSPCTG00005018097)	ENSPCTG00005018057	ENSPCTG00005018003	HDX (ENSPCTG00005017842)	RPS6KA6 (ENSPCTG00005017401)	POU3F4 (ENSPCTG00005017365)	ENSPCTG00005017351	ENSPCTG00005017342	ENSPCTG00005017278	SH3BGRL (ENSPCTG00005017239)	ENSPCTG00005017210 #22	HMGN5 (ENSPCTG00005017184)	BRWD3 (ENSPCTG00005016926)	TENT5D (ENSPCTG00005016891)	ENSPCTG00005016832	ENSPCTG00005016800	TBX22 (ENSPCTG00005016705)	ITM2A (ENSPCTG00005016548)	GPR174 (ENSPCTG00005016529)	ENSPCTG00005016517	P2RY10 (ENSPCTG00005016500)	LPAR4 (ENSPCTG00005016476)	TAF9B (ENSPCTG00005016200)	PGK1 (ENSPCTG00005016156)	ENSPCTG00005016116	ATP7A (ENSPCTG00005016014)
Pecora	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.a #22
Yarkand deer	MODERN SPECIES	6	CNNM2 (ENSCHYG00000015538)	AS3MT (ENSCHYG00000015224)	BORCS7 (ENSCHYG00000015118)	ENSCHYG00000015093	WBP1L (ENSCHYG00000014950)	SFXN2 (ENSCHYG00000014532)	ARL3 (ENSCHYG00000014398)	TRIM8 (ENSCHYG00000014350)	SUFU (ENSCHYG00000014200)	ACTR1A (ENSCHYG00000014018)	MFSD13A (ENSCHYG00000013882)	CUEDC2 (ENSCHYG00000013695)	FBXL15 (ENSCHYG00000013637)	PSD (ENSCHYG00000013510)	NFKB2 (ENSCHYG00000013218)	ENSCHYG00000013154 #22	GBF1 (ENSCHYG00000012906)	PITX3 (ENSCHYG00000012861)	ELOVL3 (ENSCHYG00000012788)	NOLC1 (ENSCHYG00000012710)	PPRC1 (ENSCHYG00000012117)	LDB1 (ENSCHYG00000011992)	HPS6 (ENSCHYG00000011978)	ARMH3 (ENSCHYG00000011524)	KCNIP2 (ENSCHYG00000011315)	OGA (ENSCHYG00000011095)	NPM3 (ENSCHYG00000011000)	FGF8 (ENSCHYG00000010585)	FBXW4 (ENSCHYG00000010417)	DPCD (ENSCHYG00000010353)	POLL (ENSCHYG00000010092)
Percora_a	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.a #22
Siberian musk deer	MODERN SPECIES	84	CCDC136 (ENSMMSG00000019946)	FLNC (ENSMMSG00000019492)	ATP6V1F (ENSMMSG00000019428)	ATP6V1FNB (ENSMMSG00000019402)	KCP (ENSMMSG00000018961)	IRF5 (ENSMMSG00000018827)	ENSMMSG00000018787	TNPO3 (ENSMMSG00000018649)	TSPAN33 (ENSMMSG00000018592)	SMO (ENSMMSG00000018531)	AHCYL2 (ENSMMSG00000018231)	STRIP2 (ENSMMSG00000018129)	SMKR1 (ENSMMSG00000018106)	NRF1 (ENSMMSG00000018044)	UBE2H (ENSMMSG00000017959)	ENSMMSG00000017936 #22	ZC3HC1 (ENSMMSG00000017666)	KLHDC10 (ENSMMSG00000017588)	TMEM209 (ENSMMSG00000017357)	SSMEM1 (ENSMMSG00000017319)	CPA4 (ENSMMSG00000017188)	CPA5 (ENSMMSG00000017074)	CPA1 (ENSMMSG00000016989)	CEP41 (ENSMMSG00000016930)	MEST (ENSMMSG00000016390)	COPG2 (ENSMMSG00000016326)	TSGA13 (ENSMMSG00000016276)	KLF14 (ENSMMSG00000016267)	ENSMMSG00000016231	ENSMMSG00000016214	MKLN1 (ENSMMSG00000016151)
Bovidae	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.a #22
Bovinae	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.a #22
Bos	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.a #22
Bos_a	ANCESTRAL SPECIES	3	ENSGT00940000161168 #8	ENSGT00940000156832.p.a #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517.o #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a #29	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813.o #36	ENSGT00940000161158 #37
Domestic yak	MODERN SPECIES	24	RDH5 (ENSBGRG00000009928) #8	ENSBGRG00000009987 #9	GDF11 (ENSBGRG00000010067) #10	ENSBGRG00000000304 #11	ORMDL2 (ENSBGRG00000000324) #12	DNAJC14 (ENSBGRG00000000342) #13	ENSBGRG00000000362	MMP19 (ENSBGRG00000000387) #14	PYM1 (ENSBGRG00000000440) #15	DGKA (ENSBGRG00000000464) #16	PMEL (ENSBGRG00000000563) #17	CDK2 (ENSBGRG00000000696) #18	RAB5B (ENSBGRG00000000822) #19	SUOX (ENSBGRG00000000850) #20	IKZF4 (ENSBGRG00000000867) #21	RPS26 (ENSBGRG00000000914) #22	ERBB3 (ENSBGRG00000000947) #23	PA2G4 (ENSBGRG00000001097) #24	ENSBGRG00000001190	ZC3H10 (ENSBGRG00000001206) #26	ESYT1 (ENSBGRG00000001229) #27	MYL6B (ENSBGRG00000001320) #28	MYL6 (ENSBGRG00000001372) #29	SMARCC2 (ENSBGRG00000001491) #30	RNF41 (ENSBGRG00000002082) #31	NABP2 (ENSBGRG00000002100) #32	SLC39A5 (ENSBGRG00000002136) #33	ANKRD52 (ENSBGRG00000002256) #34	COQ10A (ENSBGRG00000002419) #35	ENSBGRG00000002491 #36	CNPY2 (ENSBGRG00000002556) #37
Caprinae	ANCESTRAL SPECIES		ENSGT00940000156832.p.a #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517.o #18	ENSGT00940000160756 #19	ENSGT00910000147679	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.b ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37
Rambouillet Sheep	MODERN SPECIES	2	ENSOARG00020011224	UTP6 (ENSOARG00020011367)	SUZ12 (ENSOARG00020011487)	CRLF3 (ENSOARG00020011795)	ENSOARG00020011916	TEFM (ENSOARG00020011981)	ADAP2 (ENSOARG00020012053)	RNF135 (ENSOARG00020012111)	RHOT1 (ENSOARG00020012187)	RHBDL3 (ENSOARG00020012523)	C17orf75 (ENSOARG00020012947)	ZNF207 (ENSOARG00020013074)	PSMD11 (ENSOARG00020013882)	CDK5R1 (ENSOARG00020014060)	MYO1D (ENSOARG00020014169)	RPS26 (ENSOARG00020016985) #22	TMEM98 (ENSOARG00020017022)	SPACA3 (ENSOARG00020017184)	ASIC2 (ENSOARG00020017317)	CCL2 (ENSOARG00020017573)	CCL11 (ENSOARG00020017624)	CCL8 (ENSOARG00020017661)	CCL1 (ENSOARG00020017691)	TMEM132E (ENSOARG00020017730)	CCT6B (ENSOARG00020018028)	ZNF830 (ENSOARG00020018540)	LIG3 (ENSOARG00020018561)	RFFL (ENSOARG00020018710)	ENSOARG00020018814	FNDC8 (ENSOARG00020018903)	ENSOARG00020018949
Goat	DUPLICATION
Goat	MODERN SPECIES	24	ENSCHIG00000021207 #9	GDF11 (ENSCHIG00000000705) #10	ENSCHIG00000013335 #11	ORMDL2 (ENSCHIG00000018442) #12	DNAJC14 (ENSCHIG00000024690) #13	ENSCHIG00000010424	MMP19 (ENSCHIG00000020526) #14	PYM1 (ENSCHIG00000026207) #15	DGKA (ENSCHIG00000013491) #16	PMEL (ENSCHIG00000024875) #17	CDK2 (ENSCHIG00000006945) #18	RAB5B (ENSCHIG00000010333) #19	ENSCHIG00000022774	SUOX (ENSCHIG00000006773) #20	IKZF4 (ENSCHIG00000015072) #21	RPS26 (ENSCHIG00000014348) #22	ERBB3 (ENSCHIG00000013969) #23	ENSCHIG00000009104 #24	ZC3H10 (ENSCHIG00000003359) #26	ESYT1 (ENSCHIG00000023216) #27	MYL6B (ENSCHIG00000006417) #28	SMARCC2 (ENSCHIG00000019135) #30	RNF41 (ENSCHIG00000009196) #31	NABP2 (ENSCHIG00000015362) #32	SLC39A5 (ENSCHIG00000022298) #33	ENSCHIG00000021328	ANKRD52 (ENSCHIG00000014518) #34	COQ10A (ENSCHIG00000014612) #35	CS (ENSCHIG00000027013) #36	CNPY2 (ENSCHIG00000011857) #37	PAN2 (ENSCHIG00000026935)
Goat	DUPLICATION
Goat	MODERN SPECIES	776																ENSCHIG00000018406 #22
Goat	MODERN SPECIES	9	SHKBP1 (ENSCHIG00000026431)	LTBP4 (ENSCHIG00000018120)	NUMBL (ENSCHIG00000021866)	COQ8B (ENSCHIG00000013090)	ITPKC (ENSCHIG00000027230)	ACTMAP (ENSCHIG00000026330)	SNRPA (ENSCHIG00000026827)	MIA (ENSCHIG00000025627)	RAB4B (ENSCHIG00000003920)	EGLN2 (ENSCHIG00000026382)	CYP2F3 (ENSCHIG00000014344)	CYP2A13 (ENSCHIG00000001609)	CYP2G1 (ENSCHIG00000013687)	ENSCHIG00000018905	ENSCHIG00000026532	ENSCHIG00000021457 #22	CYP2S1 (ENSCHIG00000022245)	AXL (ENSCHIG00000020380)	HNRNPUL1 (ENSCHIG00000015165)	CCDC97 (ENSCHIG00000018846)	TGFB1 (ENSCHIG00000011916)	B9D2 (ENSCHIG00000024038)	TMEM91 (ENSCHIG00000013235)	EXOSC5 (ENSCHIG00000026498)	BCKDHA (ENSCHIG00000025690)	B3GNT8 (ENSCHIG00000011490)	DMAC2 (ENSCHIG00000022889)	CYP2B6 (ENSCHIG00000021270)	ERICH4 (ENSCHIG00000015175)	ENSCHIG00000007384	LIPE (ENSCHIG00000020815)
Laurasiatheria_b	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.a #22
Carnivora	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.a #22
Felidae	ANCESTRAL SPECIES	2	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a.q.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.b.a ##28	ENSGT01030000234570.d.b.a.a.a.b.a.b.b ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37
Panthera	ANCESTRAL SPECIES		ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a.q.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.b.b ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37	ENSGT00390000013978.d
Tiger	MODERN SPECIES	160	RDH5 (ENSPTIG00000015296) #8	CD63 (ENSPTIG00000015413) #9	GDF11 (ENSPTIG00000015812) #10	SARNP (ENSPTIG00000015987) #11	ENSPTIG00000016137 #12	DNAJC14 (ENSPTIG00000016222) #13	ENSPTIG00000016354	MMP19 (ENSPTIG00000016651) #14	PYM1 (ENSPTIG00000017380) #15	DGKA (ENSPTIG00000017513) #16	PMEL (ENSPTIG00000017816) #17	CDK2 (ENSPTIG00000018583) #18	RAB5B (ENSPTIG00000018924) #19	SUOX (ENSPTIG00000019173) #20	IKZF4 (ENSPTIG00000019541) #21	RPS26 (ENSPTIG00000000174) #22	ERBB3 (ENSPTIG00000000947) #23	PA2G4 (ENSPTIG00000003864) #24	ENSPTIG00000005443	ZC3H10 (ENSPTIG00000006237) #26	ESYT1 (ENSPTIG00000006039) #27	MYL6B (ENSPTIG00000006978) #28	MYL6 (ENSPTIG00000007516) ##28	SMARCC2 (ENSPTIG00000009222) #30	RNF41 (ENSPTIG00000010920) #31	NABP2 (ENSPTIG00000011222) #32	SLC39A5 (ENSPTIG00000011295) #33	ENSPTIG00000006325	COQ10A (ENSPTIG00000012041) #35	CS (ENSPTIG00000012285) #36	CNPY2 (ENSPTIG00000012376) #37
Panthera_a	ANCESTRAL SPECIES	12	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a.q.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00390000002517.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.b.a.b.b ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37	ENSGT00390000013978.d
leopard	DUPLICATION
leopard	MODERN SPECIES	27	RDH5 (ENSPPRG00000024846) #8	CD63 (ENSPPRG00000024910) #9	GDF11 (ENSPPRG00000021730) #10	SARNP (ENSPPRG00000020704) #11	ENSPPRG00000018041 #12	DNAJC14 (ENSPPRG00000015319) #13	ENSPPRG00000015108	MMP19 (ENSPPRG00000014570) #14	PYM1 (ENSPPRG00000013243) #15	DGKA (ENSPPRG00000012830) #16	PMEL (ENSPPRG00000011692) #17	CDK2 (ENSPPRG00000007168) #18	RAB5B (ENSPPRG00000005396) #19	SUOX (ENSPPRG00000004515) #20	IKZF4 (ENSPPRG00000003252) #21	RPS26 (ENSPPRG00000002646) #22	ERBB3 (ENSPPRG00000002346) #23	PA2G4 (ENSPPRG00000023308) #24	ENSPPRG00000020742	ESYT1 (ENSPPRG00000019808) #27	ENSPPRG00000013679	MYL6B (ENSPPRG00000013141) #28	MYL6 (ENSPPRG00000011178) ##28	SMARCC2 (ENSPPRG00000008361) #30	RNF41 (ENSPPRG00000001888) #31	NABP2 (ENSPPRG00000001294) #32	SLC39A5 (ENSPPRG00000000308) #33	ANKRD52 (ENSPPRG00000022768) #34	COQ10A (ENSPPRG00000023240) #35	CS (ENSPPRG00000024058) #36	CNPY2 (ENSPPRG00000022430) #37
leopard	MODERN SPECIES	52	ANGPT1 (ENSPPRG00000014659)	ENSPPRG00000013445	ABRA (ENSPPRG00000013192)	OXR1 (ENSPPRG00000012345)	ZFPM2 (ENSPPRG00000010402)	LRP12 (ENSPPRG00000009849)	DPYS (ENSPPRG00000009092)	ENSPPRG00000008975	RIMS2 (ENSPPRG00000008568)	DCAF13 (ENSPPRG00000005766)	SLC25A32 (ENSPPRG00000005112)	CTHRC1 (ENSPPRG00000004807)	FZD6 (ENSPPRG00000004117)	BAALC (ENSPPRG00000003098)	ATP6V1C1 (ENSPPRG00000003041)	ENSPPRG00000002886 #22	AZIN1 (ENSPPRG00000002335)	KLF10 (ENSPPRG00000002095)	ODF1 (ENSPPRG00000001703)	UBR5 (ENSPPRG00000001290)	RRM2B (ENSPPRG00000010745)	NCALD (ENSPPRG00000008846)	GRHL2 (ENSPPRG00000008056)	ENSPPRG00000006486	ENSPPRG00000006131	ZNF706 (ENSPPRG00000005777)	YWHAZ (ENSPPRG00000005314)	ENSPPRG00000004097	PABPC1 (ENSPPRG00000003755)	SNX31 (ENSPPRG00000001393)	ANKRD46 (ENSPPRG00000000092)
Laurasiatheria_c	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.a #22
Chiroptera	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.a #22
Microchiroptera	ANCESTRAL SPECIES	2	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.b ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B.p #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37
Greater horseshoe bat	MODERN SPECIES	1	RDH5 (ENSRFEG00010006761) #8	CD63 (ENSRFEG00010006821) #9	GDF11 (ENSRFEG00010006922) #10	ENSRFEG00010006961 #11	ORMDL2 (ENSRFEG00010007038) #12	DNAJC14 (ENSRFEG00010007088) #13	ENSRFEG00010007137	MMP19 (ENSRFEG00010007156) #14	PYM1 (ENSRFEG00010007235) #15	DGKA (ENSRFEG00010007329) #16	PMEL (ENSRFEG00010007423) #17	CDK2 (ENSRFEG00010007558) #18	RAB5B (ENSRFEG00010007708) #19	SUOX (ENSRFEG00010007748) #20	IKZF4 (ENSRFEG00010007797) #21	RPS26 (ENSRFEG00010007975) #22	ERBB3 (ENSRFEG00010008021) #23	ENSRFEG00010008154 #24	ENSRFEG00010008193	ENSRFEG00010008225	ZC3H10 (ENSRFEG00010008259) #26	ESYT1 (ENSRFEG00010008273) #27	MYL6B (ENSRFEG00010008336) #28	MYL6 (ENSRFEG00010008401) ##28	SMARCC2 (ENSRFEG00010008662) #30	RNF41 (ENSRFEG00010008805) #31	NABP2 (ENSRFEG00010008863) #32	SLC39A5 (ENSRFEG00010008909) #33	ANKRD52 (ENSRFEG00010008957) #34	COQ10A (ENSRFEG00010009001) #35	CS (ENSRFEG00010009145) #36
Microbat	MODERN SPECIES	940	SPATS2L (ENSMLUG00000006594)	KCTD18 (ENSMLUG00000006605)	SGO2 (ENSMLUG00000004245)	AOX1 (ENSMLUG00000016684)	ENSMLUG00000027760	ENSMLUG00000022412	BZW1 (ENSMLUG00000001653)	CLK1 (ENSMLUG00000000344)	PPIL3 (ENSMLUG00000013189)	NIF3L1 (ENSMLUG00000001658)	ORC2 (ENSMLUG00000001662)	HYCC2 (ENSMLUG00000012874)	NDUFB3 (ENSMLUG00000012878)	ENSMLUG00000028281	CFLAR (ENSMLUG00000005920)	ENSMLUG00000022617 #22	ENSMLUG00000030008	CASP8 (ENSMLUG00000015535)	FLACC1 (ENSMLUG00000015546)	TRAK2 (ENSMLUG00000004915)	STRADB (ENSMLUG00000017558)	ENSMLUG00000026061	ENSMLUG00000017559	TMEM237 (ENSMLUG00000017562)	MPP4 (ENSMLUG00000017563)	ALS2 (ENSMLUG00000017564)	ENSMLUG00000002501	CDK15 (ENSMLUG00000017566)	FZD7 (ENSMLUG00000010034)	ENSMLUG00000010077	ENSMLUG00000007504
Atlantogenata	ANCESTRAL SPECIES	16	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.b ##28	ENSGT01030000234570.d.b.a.a.a.b.a.a #29	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36
Xenarthra	ANCESTRAL SPECIES	12									ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.b ##28	ENSGT01030000234570.d.b.a.a.a.b.a.b.a ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37
Sloth	MODERN SPECIES	13155																RPS26 (ENSCHOG00000001489) #22
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	900												TXNL1 (ENSDNOG00000044086)	WDR7 (ENSDNOG00000009358)	ST8SIA3 (ENSDNOG00000044416)	ONECUT2 (ENSDNOG00000041725)	ENSDNOG00000036306 #22	FECH (ENSDNOG00000003508)	NARS1 (ENSDNOG00000039971)
Armadillo	MODERN SPECIES	2301	ITGA7 (ENSDNOG00000049752) #7	METTL7B (ENSDNOG00000046100)	BLOC1S1 (ENSDNOG00000044730)	RDH5 (ENSDNOG00000032509) #8	CD63 (ENSDNOG00000018812) #9	GDF11 (ENSDNOG00000014513) #10	SARNP (ENSDNOG00000014518) #11	ORMDL2 (ENSDNOG00000008895) #12	PYM1 (ENSDNOG00000048414) #15	DGKA (ENSDNOG00000016947) #16	PMEL (ENSDNOG00000016948) #17	CDK2 (ENSDNOG00000043354) #18	RAB5B (ENSDNOG00000016952) #19	SUOX (ENSDNOG00000016955) #20	IKZF4 (ENSDNOG00000037824) #21	RPS26 (ENSDNOG00000049367) #22	ERBB3 (ENSDNOG00000001011) #23	PA2G4 (ENSDNOG00000001015) #24	ZC3H10 (ENSDNOG00000040571) #26	ESYT1 (ENSDNOG00000000337) #27	MYL6B (ENSDNOG00000007592) #28	MYL6 (ENSDNOG00000042053) ##28	SMARCC2 (ENSDNOG00000004036) #30	RNF41 (ENSDNOG00000006013) #31	NABP2 (ENSDNOG00000013517) #32	SLC39A5 (ENSDNOG00000046490) #33	ANKRD52 (ENSDNOG00000031016) #34	COQ10A (ENSDNOG00000038641) #35	ENSDNOG00000010907 #36	CNPY2 (ENSDNOG00000010925) #37	PAN2 (ENSDNOG00000010940)
Armadillo	MODERN SPECIES	3142																ENSDNOG00000033756 #22
Eutheria	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.b ##22
Atlantogenata	ANCESTRAL SPECIES	16	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.b ##28	ENSGT01030000234570.d.b.a.a.a.b.a.a #29	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37
Afrotheria	ANCESTRAL SPECIES	8	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.b ##28	ENSGT01030000234570.d.b.a.a.a.b.a.a #29	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37
Tenrec	MODERN SPECIES	8152																ENSETEG00000004510 ##22
Afrotheria_a	ANCESTRAL SPECIES	8	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.b ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37	ENSGT00390000013978.d
Elephant	DUPLICATION
Elephant	MODERN SPECIES	1	ENSLAFG00000014940	STX7 (ENSLAFG00000002029)	MOXD1 (ENSLAFG00000017347)	CCN2 (ENSLAFG00000002298)	ENPP1 (ENSLAFG00000010741)	ENSLAFG00000026205	ENPP3 (ENSLAFG00000003881)	MED23 (ENSLAFG00000003872)	ARG1 (ENSLAFG00000003867)	ENSLAFG00000031742	ENSLAFG00000025840	ENSLAFG00000031241	AKAP7 (ENSLAFG00000005191)	EPB41L2 (ENSLAFG00000023093)	TMEM200A (ENSLAFG00000029026)	ENSLAFG00000022075 ##22	SAMD3 (ENSLAFG00000014686)	L3MBTL3 (ENSLAFG00000014675)	ARHGAP18 (ENSLAFG00000016059)	LAMA2 (ENSLAFG00000003130)	PTPRK (ENSLAFG00000015631)	THEMIS (ENSLAFG00000006755)	ENSLAFG00000032697	C6orf58 (ENSLAFG00000008340)	SOGA3 (ENSLAFG00000013168)	KIAA0408 (ENSLAFG00000020682)	ECHDC1 (ENSLAFG00000012759)	RNF146 (ENSLAFG00000029036)	RSPO3 (ENSLAFG00000003144)	CENPW (ENSLAFG00000007940)	TRMT11 (ENSLAFG00000003414)
Elephant	MODERN SPECIES	196	RDH5 (ENSLAFG00000011270) #8	CD63 (ENSLAFG00000011275) #9	GDF11 (ENSLAFG00000013173) #10	SARNP (ENSLAFG00000015053) #11	ORMDL2 (ENSLAFG00000031745) #12	DNAJC14 (ENSLAFG00000023257) #13	ENSLAFG00000031627	MMP19 (ENSLAFG00000017807) #14	PYM1 (ENSLAFG00000002369) #15	DGKA (ENSLAFG00000017993) #16	PMEL (ENSLAFG00000014591) #17	CDK2 (ENSLAFG00000016537) #18	RAB5B (ENSLAFG00000018009) #19	SUOX (ENSLAFG00000008237) #20	IKZF4 (ENSLAFG00000026742) #21	ENSLAFG00000013329 ##22	ERBB3 (ENSLAFG00000014798) #23	PA2G4 (ENSLAFG00000029825) #24	ZC3H10 (ENSLAFG00000014817) #26	ESYT1 (ENSLAFG00000014820) #27	MYL6B (ENSLAFG00000012658) #28	SMARCC2 (ENSLAFG00000014832) #30	RNF41 (ENSLAFG00000014848) #31	NABP2 (ENSLAFG00000000193) #32	SLC39A5 (ENSLAFG00000000195) #33	ANKRD52 (ENSLAFG00000014852) #34	COQ10A (ENSLAFG00000014858) #35	CS (ENSLAFG00000014860) #36	CNPY2 (ENSLAFG00000014867) #37	PAN2 (ENSLAFG00000014873)	IL23A (ENSLAFG00000014886)
Boreoeutheria	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.b ##22
Euarchontoglires	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.b ##22
Euarchontoglires_A	ANCESTRAL SPECIES	5	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT01060000249814	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.b.a ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37
Glires	ANCESTRAL SPECIES	4	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT01060000249814	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.b.a ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37
Lagomorpha	ANCESTRAL SPECIES	30	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT01060000249814	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.b.a ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37
Pika	MODERN SPECIES	9376																ENSOPRG00000005721 ##22	ERBB3 (ENSOPRG00000005724) #23	PA2G4 (ENSOPRG00000005779) #24
Rodentia	ANCESTRAL SPECIES	5	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.b.a ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37	ENSGT00390000013978.d
Rodentia_B	ANCESTRAL SPECIES	3	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.b.a ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37	ENSGT00390000013978.d
Kangaroo rat	MODERN SPECIES	337	B3gnt9 (ENSDORG00000030078)	Phaf1 (ENSDORG00000015125)	Cbfb (ENSDORG00000029036)	ENSDORG00000029390	ENSDORG00000013543	Rrad (ENSDORG00000013540)	Pdp2 (ENSDORG00000024268)	Car7 (ENSDORG00000013532)	Nae1 (ENSDORG00000013530)	Dync1li2 (ENSDORG00000010219)	Cmtm3 (ENSDORG00000008429)	Tk2 (ENSDORG00000015017)	Bean1 (ENSDORG00000015016)	Cdh11 (ENSDORG00000002619)	Cdh8 (ENSDORG00000008036)	ENSDORG00000023898 ##22	ENSDORG00000026429	Got2 (ENSDORG00000015354)	Slc38a7 (ENSDORG00000015353)	ENSDORG00000029061	ENSDORG00000002101	Setd6 (ENSDORG00000002098)	Ndrg4 (ENSDORG00000002097)	Gins3 (ENSDORG00000023548)	Prss54 (ENSDORG00000008712)	Ccdc113 (ENSDORG00000008710)	Csnk2a2 (ENSDORG00000001893)	Cfap20 (ENSDORG00000027182)	Mmp15 (ENSDORG00000001890)	Usb1 (ENSDORG00000001888)	Zfp319 (ENSDORG00000027637)
Myomorpha	ANCESTRAL SPECIES	2	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.b.a ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37	ENSGT00390000013978.d
Lesser Egyptian jerboa	MODERN SPECIES	42	ENSJJAG00000019906	Bloc1s1 (ENSJJAG00000020435)	Cd63 (ENSJJAG00000023203) #9	Gdf11 (ENSJJAG00000019875) #10	ENSJJAG00000011057 #11	ENSJJAG00000015960 #12	Tmem198b (ENSJJAG00000016439)	Mmp19 (ENSJJAG00000020490) #14	Pym1 (ENSJJAG00000013338) #15	Dgka (ENSJJAG00000009134) #16	Pmel (ENSJJAG00000012480) #17	Cdk2 (ENSJJAG00000004099) #18	Rab5b (ENSJJAG00000019506) #19	Suox (ENSJJAG00000020059) #20	Ikzf4 (ENSJJAG00000017699) #21	ENSJJAG00000022377 ##22	Erbb3 (ENSJJAG00000021056) #23	Pa2g4 (ENSJJAG00000024317) ##24	ENSJJAG00000024377	Zc3h10 (ENSJJAG00000001726) #26	Esyt1 (ENSJJAG00000023925) #27	Myl6b (ENSJJAG00000019772) #28	ENSJJAG00000019349 ##28	Smarcc2 (ENSJJAG00000010701) #30	Rnf41 (ENSJJAG00000013618) #31	Nabp2 (ENSJJAG00000024279) #32	Slc39a5 (ENSJJAG00000010955) #33	Ankrd52 (ENSJJAG00000019796) #34	ENSJJAG00000024275 #36	Cnpy2 (ENSJJAG00000020135) #37	Pan2 (ENSJJAG00000013044)
Muroidea	ANCESTRAL SPECIES	5	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.b.a ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37	ENSGT00390000013978.d
Muroidea_A	ANCESTRAL SPECIES	22	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.b.a ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37	ENSGT00390000013978.d
Cricetidae	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.b ##22
Cricetidae_B	ANCESTRAL SPECIES	35	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.b.a ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37	ENSGT00390000013978.d
Northern American deer mouse	MODERN SPECIES	20	Faim (ENSPEMG00000015497)	Foxl2 (ENSPEMG00000005563)	ENSPEMG00000025013	ENSPEMG00000026694	ENSPEMG00000025370	Mrps22 (ENSPEMG00000020399)	Copb2 (ENSPEMG00000015558)	Rbp2 (ENSPEMG00000016242)	Rbp1 (ENSPEMG00000020449)	Nmnat3 (ENSPEMG00000020493)	Clstn2 (ENSPEMG00000020916)	Trim42 (ENSPEMG00000020887)	Slc25a36 (ENSPEMG00000029457)	Spsb4 (ENSPEMG00000021848)	Pxylp1 (ENSPEMG00000027594)	ENSPEMG00000001384 ##22	Zbtb38 (ENSPEMG00000021180)	ENSPEMG00000020968	Rasa2 (ENSPEMG00000020689)	Gm28729 (ENSPEMG00000021490)	ENSPEMG00000020541	ENSPEMG00000025894	Tfdp2 (ENSPEMG00000020459)	Gk5 (ENSPEMG00000021213)	ENSPEMG00000028629	Xrn1 (ENSPEMG00000020610)	Atr (ENSPEMG00000022407)	Pls1 (ENSPEMG00000023583)	Trpc1 (ENSPEMG00000021151)	Pcolce2 (ENSPEMG00000021235)	Paqr9 (ENSPEMG00000021256)
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	80	ENSMOCG00000005700	Angptl1 (ENSMOCG00000023001)	Ralgps2 (ENSMOCG00000014796)	Fam20b (ENSMOCG00000002075)	Tor3a (ENSMOCG00000007507)	Abl2 (ENSMOCG00000002257)	Soat1 (ENSMOCG00000016867)	ENSMOCG00000017817	Axdnd1 (ENSMOCG00000005137)	Nphs2 (ENSMOCG00000016752)	Tdrd5 (ENSMOCG00000005624)	Fam163a (ENSMOCG00000020187)	Tor1aip2 (ENSMOCG00000014435)	ENSMOCG00000006601	Tor1aip1 (ENSMOCG00000016290)	ENSMOCG00000009954 ##22	Cep350 (ENSMOCG00000016460)	Qsox1 (ENSMOCG00000008140)	Lhx4 (ENSMOCG00000020771)	Acbd6 (ENSMOCG00000020443)	Xpr1 (ENSMOCG00000011713)	BC034090 (ENSMOCG00000009825)	Stx6 (ENSMOCG00000000832)	Mr1 (ENSMOCG00000020384)	Ier5 (ENSMOCG00000001094)	Cacna1e (ENSMOCG00000019081)	ENSMOCG00000007666	ENSMOCG00000022939	Rgsl1 (ENSMOCG00000017154)	Rnasel (ENSMOCG00000009828)	Rgs16 (ENSMOCG00000009143)
Prairie vole	MODERN SPECIES	182	Gdf11 (ENSMOCG00000015305) #10	Rdh5 (ENSMOCG00000011765) #8	Cd63 (ENSMOCG00000002590) #9	Sarnp (ENSMOCG00000006502) #11	Ormdl2 (ENSMOCG00000015742) #12	Dnajc14 (ENSMOCG00000011666) #13	Tmem198b (ENSMOCG00000000653)	Mmp19 (ENSMOCG00000009127) #14	Pym1 (ENSMOCG00000010208) #15	Dgka (ENSMOCG00000021050) #16	Pmel (ENSMOCG00000012505) #17	Cdk2 (ENSMOCG00000005645) #18	ENSMOCG00000013073 #19	Suox (ENSMOCG00000004233) #20	Ikzf4 (ENSMOCG00000006780) #21	ENSMOCG00000009275 ##22	Erbb3 (ENSMOCG00000018658) #23	Pa2g4 (ENSMOCG00000002004) ##24	ENSMOCG00000012870	Zc3h10 (ENSMOCG00000019869) #26	Esyt1 (ENSMOCG00000009993) #27	Myl6b (ENSMOCG00000009171) #28	ENSMOCG00000011540 ##28	Smarcc2 (ENSMOCG00000005516) #30	Rnf41 (ENSMOCG00000019237) #31	Nabp2 (ENSMOCG00000020813) #32	Slc39a5 (ENSMOCG00000009064) #33	Ankrd52 (ENSMOCG00000000087) #34	Coq10a (ENSMOCG00000002793) #35	ENSMOCG00000003452 #36	Cnpy2 (ENSMOCG00000014978) #37
Murinae	ANCESTRAL SPECIES	22	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a #29	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37	ENSGT00390000013978.d
Rat	MODERN SPECIES	5	Dgkq (ENSRNOG00000024112)	Tmem175 (ENSRNOG00000000044)	Gak (ENSRNOG00000000048)	Pcgf3 (ENSRNOG00000000062)	Slc49a3 (ENSRNOG00000023937)	Atp5me (ENSRNOG00000000064)	Pde6b (ENSRNOG00000000065)	Pigg (ENSRNOG00000071170)	Dr1 (ENSRNOG00000000070)	Ccdc18 (ENSRNOG00000024545)	Tmed5 (ENSRNOG00000000073)	Mtf2 (ENSRNOG00000000075)	Dipk1a (ENSRNOG00000023533)	Rpl5 (ENSRNOG00000023529)	Evi5 (ENSRNOG00000002039)	LOC108352688 (ENSRNOG00000068623) ##22	Ube2d2b (ENSRNOG00000063388)	Gfi1 (ENSRNOG00000002042)	Rpap2 (ENSRNOG00000023484)	Glmn (ENSRNOG00000002054)	C14h1orf146 (ENSRNOG00000047876)	Btbd8 (ENSRNOG00000023446)	Lpcat2b (ENSRNOG00000055849)	Ephx4 (ENSRNOG00000023389)	Brdt (ENSRNOG00000002073)	Tgfbr3 (ENSRNOG00000002093)	Cdc7 (ENSRNOG00000002105)	LOC690138 (ENSRNOG00000064883)	Hfm1 (ENSRNOG00000023299)	Zfp644 (ENSRNOG00000002112)	ENSRNOG00000070225
Mus	ANCESTRAL SPECIES	23	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT00900000143379	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a #29	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813.s #36	ENSGT00940000161158 #37
Shrew mouse	MODERN SPECIES	22	Rdh5 (MGP_PahariEiJ_G0031123) #8	Cd63 (MGP_PahariEiJ_G0031124) #9	Gdf11 (MGP_PahariEiJ_G0031125) #10	Sarnp (MGP_PahariEiJ_G0031126) #11	Ormdl2 (MGP_PahariEiJ_G0031127) #12	Dnajc14 (MGP_PahariEiJ_G0031128) #13	Tmem198b (MGP_PahariEiJ_G0031129)	Mmp19 (MGP_PahariEiJ_G0031130) #14	Pym1 (MGP_PahariEiJ_G0031131) #15	Dgka (MGP_PahariEiJ_G0031132) #16	Pmel (MGP_PahariEiJ_G0031133) #17	Cdk2 (MGP_PahariEiJ_G0031134) #18	Rab5b (MGP_PahariEiJ_G0031135) #19	Suox (MGP_PahariEiJ_G0031136) #20	Ikzf4 (MGP_PahariEiJ_G0031137) #21	MGP_PahariEiJ_G0031138 ##22	Erbb3 (MGP_PahariEiJ_G0031139) #23	Pa2g4 (MGP_PahariEiJ_G0031140) ##24	Rpl41 (MGP_PahariEiJ_G0031141)	Zc3h10 (MGP_PahariEiJ_G0031142) #26	Esyt1 (MGP_PahariEiJ_G0031143) #27	Myl6b (MGP_PahariEiJ_G0031144) #28	MGP_PahariEiJ_G0031145 ##28	Smarcc2 (MGP_PahariEiJ_G0031146) #30	Rnf41 (MGP_PahariEiJ_G0031147) #31	Nabp2 (MGP_PahariEiJ_G0031148) #32	MGP_PahariEiJ_G0031149 #34	Slc39a5 (MGP_PahariEiJ_G0031150) #33	Coq10a (MGP_PahariEiJ_G0031151) #35	Cs (MGP_PahariEiJ_G0031152) #36	Cnpy2 (MGP_PahariEiJ_G0031153) #37
Mus_A	ANCESTRAL SPECIES	11	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT00900000143379	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a #29	ENSGT00940000155746 #30	ENSGT00530000063647.B.w #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813.s #36	ENSGT00940000161158 #37
Mus_B	ANCESTRAL SPECIES	10	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a.g #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT00900000143379	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a #29	ENSGT00940000155746 #30	ENSGT00530000063647.B.w #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813.s #36	ENSGT00940000161158 #37
Mus_C	ANCESTRAL SPECIES	7	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a.g #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT00900000143379	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a #29	ENSGT00940000155746 #30	ENSGT00530000063647.B.w #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813.s #36	ENSGT00940000161158 #37
spretus	MODERN SPECIES	1	Rdh5 (MGP_SPRETEiJ_G0016786) #8	Cd63 (MGP_SPRETEiJ_G0016785) #9	Gdf11 (MGP_SPRETEiJ_G0016784) #10	Sarnp (MGP_SPRETEiJ_G0016783) #11	MGP_SPRETEiJ_G0016782 #12	Dnajc14 (MGP_SPRETEiJ_G0016781) #13	MGP_SPRETEiJ_G0016780	Mmp19 (MGP_SPRETEiJ_G0016779) #14	Pym1 (MGP_SPRETEiJ_G0016778) #15	Dgka (MGP_SPRETEiJ_G0016777) #16	Pmel (MGP_SPRETEiJ_G0016776) #17	Cdk2 (MGP_SPRETEiJ_G0016775) #18	Rab5b (MGP_SPRETEiJ_G0016774) #19	Suox (MGP_SPRETEiJ_G0016773) #20	Ikzf4 (MGP_SPRETEiJ_G0016772) #21	MGP_SPRETEiJ_G0016771 ##22	Erbb3 (MGP_SPRETEiJ_G0016770) #23	Pa2g4 (MGP_SPRETEiJ_G0016769) ##24	Rpl41 (MGP_SPRETEiJ_G0016768)	Zc3h10 (MGP_SPRETEiJ_G0016767) #26	Esyt1 (MGP_SPRETEiJ_G0016766) #27	Myl6b (MGP_SPRETEiJ_G0016765) #28	MGP_SPRETEiJ_G0016764 #29	Smarcc2 (MGP_SPRETEiJ_G0016763) #30	Rnf41 (MGP_SPRETEiJ_G0016762) #31	Nabp2 (MGP_SPRETEiJ_G0016761) #32	Slc39a5 (MGP_SPRETEiJ_G0016760) #33	Ankrd52 (MGP_SPRETEiJ_G0016759) #34	Coq10a (MGP_SPRETEiJ_G0016758) #35	Cs (MGP_SPRETEiJ_G0016757) #36	Cnpy2 (MGP_SPRETEiJ_G0016756) #37
Steppe mouse	MODERN SPECIES	2556	Cd63 (ENSMSIG00000028429) #9	ENSMSIG00000028443 #10	Sarnp (ENSMSIG00000000012) #11	Dnajc14 (ENSMSIG00000000033) #13	Ormdl2 (ENSMSIG00000000053) #12	Tmem198b (ENSMSIG00000000077)	Mmp19 (ENSMSIG00000000157) #14	Pym1 (ENSMSIG00000000250) #15	Dgka (ENSMSIG00000000388) #16	Pmel (ENSMSIG00000000486) #17	Cdk2 (ENSMSIG00000000542) #18	Rab5b (ENSMSIG00000000582) #19	ENSMSIG00000000603	Suox (ENSMSIG00000000615) #20	Ikzf4 (ENSMSIG00000000635) #21	ENSMSIG00000000693 ##22	Erbb3 (ENSMSIG00000000751) #23	Pa2g4 (ENSMSIG00000000829) ##24	ENSMSIG00000000919	Rpl41 (ENSMSIG00000000949)	Zc3h10 (ENSMSIG00000001003) #26	Esyt1 (ENSMSIG00000001014) #27
Rodentia_A	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.b ##22
Sciuridae	ANCESTRAL SPECIES	14	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a #29	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37	ENSGT00390000013978.d
Eurasian red squirrel	MODERN SPECIES	3	ENSSVLG00005020247	ESRRG (ENSSVLG00005020291)	USH2A (ENSSVLG00005020592)	ENSSVLG00005021878	KCTD3 (ENSSVLG00005014023)	KCNK2 (ENSSVLG00005014267)	ENSSVLG00005014446	CENPF (ENSSVLG00005014494)	PTPN14 (ENSSVLG00005014690)	SMYD2 (ENSSVLG00005014781)	PROX1 (ENSSVLG00005015139)	RPS6KC1 (ENSSVLG00005015251)	ANGEL2 (ENSSVLG00005015787)	VASH2 (ENSSVLG00005015835)	FLVCR1 (ENSSVLG00005015972)	ENSSVLG00005016057 ##22	SPATA45 (ENSSVLG00005016084)	TATDN3 (ENSSVLG00005016168)	ENSSVLG00005016573	NSL1 (ENSSVLG00005016609)	BATF3 (ENSSVLG00005016663)	GARIN4 (ENSSVLG00005016703)	ENSSVLG00005016732	NENF (ENSSVLG00005016898)	PACC1 (ENSSVLG00005016932)	PPP2R5A (ENSSVLG00005017066)	ENSSVLG00005017261	DTL (ENSSVLG00005017356)	INTS7 (ENSSVLG00005017717)	LPGAT1 (ENSSVLG00005017852)	NEK2 (ENSSVLG00005017885)
Marmotini	ANCESTRAL SPECIES	4	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a.m #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a #29	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37	ENSGT00390000013978.d
Marmotini_b	ANCESTRAL SPECIES	3	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a.m #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00390000002517.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a #29	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37
Squirrel	MODERN SPECIES	246	CD63 (ENSSTOG00000010346) #9	RDH5 (ENSSTOG00000010342) #8	GDF11 (ENSSTOG00000027405) #10	SARNP (ENSSTOG00000000283) #11	ORMDL2 (ENSSTOG00000000285) #12	DNAJC14 (ENSSTOG00000000286) #13	ENSSTOG00000020824	MMP19 (ENSSTOG00000000287) #14	PYM1 (ENSSTOG00000014206) #15	DGKA (ENSSTOG00000000291) #16	PMEL (ENSSTOG00000000295) #17	CDK2 (ENSSTOG00000000298) #18	RAB5B (ENSSTOG00000010536) #19	SUOX (ENSSTOG00000010542) #20	IKZF4 (ENSSTOG00000010547) #21	ENSSTOG00000010559 ##22	ERBB3 (ENSSTOG00000024297) #23	PA2G4 (ENSSTOG00000007732) ##24	ZC3H10 (ENSSTOG00000007753) #26	ESYT1 (ENSSTOG00000007756) #27	MYL6B (ENSSTOG00000003455) #28	MYL6 (ENSSTOG00000023318) ##28	SMARCC2 (ENSSTOG00000003479) #30	RNF41 (ENSSTOG00000003519) #31	NABP2 (ENSSTOG00000015937) #32	SLC39A5 (ENSSTOG00000015941) #33	ANKRD52 (ENSSTOG00000015950) #34	COQ10A (ENSSTOG00000015967) #35	CS (ENSSTOG00000015969) #36	CNPY2 (ENSSTOG00000015971) #37	PAN2 (ENSSTOG00000015974)
Alpin marmot	MODERN SPECIES	11	RDH5 (ENSMMMG00000014300) #8	CD63 (ENSMMMG00000014282) #9	GDF11 (ENSMMMG00000014271) #10	SARNP (ENSMMMG00000014250) #11	ENSMMMG00000014236 #12	DNAJC14 (ENSMMMG00000014214) #13	ENSMMMG00000014209	MMP19 (ENSMMMG00000014202) #14	PYM1 (ENSMMMG00000014198) #15	DGKA (ENSMMMG00000014176) #16	PMEL (ENSMMMG00000014158) #17	CDK2 (ENSMMMG00000014134) #18	RAB5B (ENSMMMG00000014124) #19	SUOX (ENSMMMG00000014114) #20	IKZF4 (ENSMMMG00000014103) #21	ENSMMMG00000014087 ##22	ERBB3 (ENSMMMG00000014039) #23	PA2G4 (ENSMMMG00000014012) ##24	ENSMMMG00000014002	ZC3H10 (ENSMMMG00000013999) #26	ESYT1 (ENSMMMG00000013950) #27	MYL6B (ENSMMMG00000013929) #28	ENSMMMG00000013894 #29	SMARCC2 (ENSMMMG00000013803) #30	RNF41 (ENSMMMG00000013786) #31	NABP2 (ENSMMMG00000013765) #32	SLC39A5 (ENSMMMG00000013736) #33	ANKRD52 (ENSMMMG00000013687) #34	COQ10A (ENSMMMG00000013679) #35	CS (ENSMMMG00000013670) #36	CNPY2 (ENSMMMG00000013663) #37
Primates	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.b ##22
Haplorrhini	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.b ##22
Tarsier	MODERN SPECIES	3299																ENSTSYG00000031300 ##22
Simiiformes	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.b ##22
Catarrhini	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.b ##22
Cercopithecidae	ANCESTRAL SPECIES	3	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944.e.a.a.b #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00910000147679	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00910000147269	ENSGT00390000002517.a.a.c.a #22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT00900000143559	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a.b ##28	ENSGT00940000155746 #30	ENSGT00900000143705	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519
Cercopithecinae	ANCESTRAL SPECIES	7	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944.e.a.a.b #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00910000147269	ENSGT00390000002517.a.a.c.a #22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT00900000143559	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a.b ##28	ENSGT00940000155746 #30	ENSGT00900000143705	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519
Cercopithecinae_a	ANCESTRAL SPECIES	7	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944.e.a.a.b #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00910000146124	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00910000147269	ENSGT00390000002517.a.a.c.a #22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT00900000143559	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a.b ##28	ENSGT00940000155746 #30	ENSGT00900000143705	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519
Macaca	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.b ##22
Macaca_a	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.b ##22
Crab-eating macaque	MODERN SPECIES	18	HTRA4 (ENSMFAG00000041865)	TM2D2 (ENSMFAG00000038805)	ADAM9 (ENSMFAG00000039520)	ADAM32 (ENSMFAG00000043270)	ENSMFAG00000058453	ADAM5 (ENSMFAG00000044676)	ENSMFAG00000057049	ENSMFAG00000035987	ENSMFAG00000054129	ADAM18 (ENSMFAG00000035678)	IDO1 (ENSMFAG00000001509)	ENSMFAG00000064281	IDO2 (ENSMFAG00000041471)	TCIM (ENSMFAG00000007134)	ZMAT4 (ENSMFAG00000043475)	ENSMFAG00000059759 ##22	SFRP1 (ENSMFAG00000035564)	ENSMFAG00000032651	GINS4 (ENSMFAG00000002972)	GPAT4 (ENSMFAG00000003498)	NKX6-3 (ENSMFAG00000039180)	ANK1 (ENSMFAG00000045115)	KAT6A (ENSMFAG00000040843)	AP3M2 (ENSMFAG00000045662)	PLAT (ENSMFAG00000041986)	IKBKB (ENSMFAG00000039739)	POLB (ENSMFAG00000030793)	DKK4 (ENSMFAG00000034088)	VDAC3 (ENSMFAG00000041877)	SLC20A2 (ENSMFAG00000000865)	SMIM19 (ENSMFAG00000002359)
Cercopithecinae_b	ANCESTRAL SPECIES	2	ENSGT00390000002944.e.a.a.b #11	ENSGT00950000183178.a #12	ENSGT00940000155637.s #13	ENSGT00390000016940.c.a	ENSGT00910000146124	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00910000147269	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a.b ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37
Cercopithecinae_d	ANCESTRAL SPECIES	3	ENSGT00940000161052 #10	ENSGT00390000002944.e.a.a.b #11	ENSGT00950000183178.a #12	ENSGT00940000155637.s #13	ENSGT00390000016940.c.a	ENSGT00910000146124	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00910000147269	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a.b ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37	ENSGT00390000013978.d
Drill	DUPLICATION
Drill	MODERN SPECIES	1662		ENSMLEG00000038545 ##11	ORMDL2 (ENSMLEG00000010430) #12	DNAJC14 (ENSMLEG00000038626) #13	ENSMLEG00000041707	ENSMLEG00000031898	MMP19 (ENSMLEG00000040676) #14	PYM1 (ENSMLEG00000007971) #15	DGKA (ENSMLEG00000019405) #16	PMEL (ENSMLEG00000041104) #17	CDK2 (ENSMLEG00000004017) #18	RAB5B (ENSMLEG00000034462) #19	SUOX (ENSMLEG00000044392) #20	IKZF4 (ENSMLEG00000031109) #21	ENSMLEG00000039376	ENSMLEG00000043596 ##22	ERBB3 (ENSMLEG00000031798) #23	ENSMLEG00000035480 ##24	ENSMLEG00000032569	ZC3H10 (ENSMLEG00000027930) #26	ESYT1 (ENSMLEG00000042262) #27	MYL6B (ENSMLEG00000035374) #28	ENSMLEG00000041676 ##28	SMARCC2 (ENSMLEG00000024985) #30	RNF41 (ENSMLEG00000038918) #31
Drill	MODERN SPECIES	584														TRIM55 (ENSMLEG00000037287)	CRH (ENSMLEG00000021986)	ENSMLEG00000007645 ##22	RRS1 (ENSMLEG00000004794)	ADHFE1 (ENSMLEG00000037829)	VXN (ENSMLEG00000029077)	MYBL1 (ENSMLEG00000032838)	VCPIP1 (ENSMLEG00000035358)	ENSMLEG00000037739	ENSMLEG00000042544	SGK3 (ENSMLEG00000041322)	MCMDC2 (ENSMLEG00000038410)	ENSMLEG00000000766	TCF24 (ENSMLEG00000039858)	PPP1R42 (ENSMLEG00000040981)	ENSMLEG00000041065	ENSMLEG00000035973	ENSMLEG00000015396
Sooty mangabey	MODERN SPECIES	117	GDF11 (ENSCATG00000045223) #10	ENSCATG00000045088 #11	ORMDL2 (ENSCATG00000045281) #12	ENSCATG00000041004 #13	ENSCATG00000006473	ENSCATG00000037704	ENSCATG00000033738 #14	PYM1 (ENSCATG00000018801) #15	DGKA (ENSCATG00000040435) #16	PMEL (ENSCATG00000038008) #17	CDK2 (ENSCATG00000042921) #18	RAB5B (ENSCATG00000034978) #19	SUOX (ENSCATG00000013498) #20	ENSCATG00000037166	IKZF4 (ENSCATG00000032139) #21	ENSCATG00000031655 ##22	ERBB3 (ENSCATG00000029468) #23	ENSCATG00000031361 ##24	ENSCATG00000027448	ZC3H10 (ENSCATG00000012691) #26	ESYT1 (ENSCATG00000038093) #27	MYL6B (ENSCATG00000040921) #28	ENSCATG00000035967 ##28	SMARCC2 (ENSCATG00000032123) #30	RNF41 (ENSCATG00000015315) #31	NABP2 (ENSCATG00000031131) #32	SLC39A5 (ENSCATG00000040652) #33	ANKRD52 (ENSCATG00000041892) #34	COQ10A (ENSCATG00000021428) #35	CS (ENSCATG00000039101) #36	CNPY2 (ENSCATG00000042349) #37
Hominoidea	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.b ##22
Gibbon	MODERN SPECIES	23	FUT10 (ENSNLEG00000012071)	ENSNLEG00000028314	MAK16 (ENSNLEG00000028118)	TTI2 (ENSNLEG00000012097)	RNF122 (ENSNLEG00000012113)	DUSP26 (ENSNLEG00000028790)	ENSNLEG00000031873	UNC5D (ENSNLEG00000012128)	ENSNLEG00000012133	KCNU1 (ENSNLEG00000012134)	ENSNLEG00000031461	ZNF703 (ENSNLEG00000034021)	ERLIN2 (ENSNLEG00000035437)	ENSNLEG00000019152	PLPBP (ENSNLEG00000012176)	ENSNLEG00000029110 ##22	ADGRA2 (ENSNLEG00000012179)	BRF2 (ENSNLEG00000012188)	RAB11FIP1 (ENSNLEG00000012194)	ENSNLEG00000012197	ADRB3 (ENSNLEG00000019123)	ENSNLEG00000031037	ENSNLEG00000029385	ASH2L (ENSNLEG00000012198)	STAR (ENSNLEG00000012221)	LSM1 (ENSNLEG00000029390)	BAG4 (ENSNLEG00000012246)	ENSNLEG00000012254	ENSNLEG00000033548	PLPP5 (ENSNLEG00000012268)	NSD3 (ENSNLEG00000012273)
Hominidae	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.b ##22
Homo/Pan/Gorilla group	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.b ##22
Gorilla	MODERN SPECIES	10	HAPLN4 (ENSGGOG00000002981)	TM6SF2 (ENSGGOG00000002983)	SUGP1 (ENSGGOG00000002984)	MAU2 (ENSGGOG00000002989)	GATAD2A (ENSGGOG00000005973)	TSSK6 (ENSGGOG00000042656)	NDUFA13 (ENSGGOG00000040690)	YJEFN3 (ENSGGOG00000005985)	CILP2 (ENSGGOG00000005993)	PBX4 (ENSGGOG00000006000)	LPAR2 (ENSGGOG00000006010)	GMIP (ENSGGOG00000006016)	ATP13A1 (ENSGGOG00000006026)	ZNF101 (ENSGGOG00000006033)	ZNF14 (ENSGGOG00000022750)	ENSGGOG00000022087 ##22	ENSGGOG00000043851	ZNF93 (ENSGGOG00000001955)	ZNF682 (ENSGGOG00000041772)	ZNF90 (ENSGGOG00000038344)	ZNF486 (ENSGGOG00000038627)	ENSGGOG00000009341	ENSGGOG00000038262	ENSGGOG00000041276	ENSGGOG00000007247	ENSGGOG00000038698	ZNF85 (ENSGGOG00000014431)	ENSGGOG00000004552	ZNF714 (ENSGGOG00000038832)	ENSGGOG00000036684	ENSGGOG00000039920
Homo/Pan group	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.b ##22
Pan	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.b ##22
Chimpanzee	MODERN SPECIES	6	FSIP1 (ENSPTRG00000006908)	THBS1 (ENSPTRG00000006907)	ENSPTRG00000049850	ENSPTRG00000006906	RASGRP1 (ENSPTRG00000006905)	FAM98B (ENSPTRG00000006904)	SPRED1 (ENSPTRG00000006903)	TMCO5A (ENSPTRG00000006902)	MEIS2 (ENSPTRG00000006901)	ENSPTRG00000051872	ENSPTRG00000042790	ENSPTRG00000045907	CDIN1 (ENSPTRG00000006899)	DPH6 (ENSPTRG00000006895)	ENSPTRG00000051854	ENSPTRG00000024159 ##22	ENSPTRG00000043293	ZNF770 (ENSPTRG00000023628)	ENSPTRG00000034082	ENSPTRG00000047034	ENSPTRG00000049569	AQR (ENSPTRG00000006891)	ACTC1 (ENSPTRG00000006890)	GJD2 (ENSPTRG00000006889)	ENSPTRG00000041962	ENSPTRG00000052392	ENSPTRG00000033778	LPCAT4 (ENSPTRG00000006882)	NUTM1 (ENSPTRG00000006881)	NOP10 (ENSPTRG00000006880)	SLC12A6 (ENSPTRG00000006879)
Bonobo	MODERN SPECIES	16	SLC6A1 (ENSPPAG00000042842)	HRH1 (ENSPPAG00000023416)	ATG7 (ENSPPAG00000040386)	VGLL4 (ENSPPAG00000035709)	TAMM41 (ENSPPAG00000037692)	ENSPPAG00000040309	SYN2 (ENSPPAG00000038622)	TIMP4 (ENSPPAG00000036078)	ENSPPAG00000030837	ENSPPAG00000028973	PPARG (ENSPPAG00000029006)	TSEN2 (ENSPPAG00000035317)	MKRN2OS (ENSPPAG00000032216)	MKRN2 (ENSPPAG00000036523)	RAF1 (ENSPPAG00000035239)	ENSPPAG00000024005 ##22	TMEM40 (ENSPPAG00000019163)	ENSPPAG00000036413	CAND2 (ENSPPAG00000004317)	RPL32 (ENSPPAG00000008188)	IQSEC1 (ENSPPAG00000036448)	ENSPPAG00000028546	NUP210 (ENSPPAG00000037715)	HDAC11 (ENSPPAG00000037567)	FBLN2 (ENSPPAG00000015671)	WNT7A (ENSPPAG00000030187)	CHCHD4 (ENSPPAG00000032925)	TMEM43 (ENSPPAG00000000804)	XPC (ENSPPAG00000043453)	LSM3 (ENSPPAG00000034074)	ENSPPAG00000036305
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.b ##22
Cebidae	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.b ##22
Cebidae_a	ANCESTRAL SPECIES	5	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944.e.a.b.a ##11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281.n ##24	ENSGT00900000143559.a	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a.a.a ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B.t ##31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37
Bolivian squirrel monkey	MODERN SPECIES	242															ENSSBOG00000031326	ENSSBOG00000033340 ##22	ENSSBOG00000031676	ENSSBOG00000030345	ENSSBOG00000024916	ZNF160 (ENSSBOG00000022506)	ZNF415 (ENSSBOG00000024055)	ZNF347 (ENSSBOG00000022309)	ZNF331 (ENSSBOG00000024189)	NLRP12 (ENSSBOG00000027339)	PRKCG (ENSSBOG00000021517)	CACNG7 (ENSSBOG00000013466)	CACNG6 (ENSSBOG00000021355)	VSTM1 (ENSSBOG00000026979)	TARM1 (ENSSBOG00000002416)	OSCAR (ENSSBOG00000022977)	ENSSBOG00000020122
Capuchin	MODERN SPECIES	735	RDH5 (ENSCCAG00000027155) #8	CD63 (ENSCCAG00000036810) #9	GDF11 (ENSCCAG00000032339) #10	ENSCCAG00000019247 ##11	ORMDL2 (ENSCCAG00000020689) #12	DNAJC14 (ENSCCAG00000037578) #13	ENSCCAG00000022525	MMP19 (ENSCCAG00000028668) #14	PYM1 (ENSCCAG00000026187) #15	DGKA (ENSCCAG00000034102) #16	PMEL (ENSCCAG00000024566) #17	CDK2 (ENSCCAG00000028131) #18	RAB5B (ENSCCAG00000019480) #19	SUOX (ENSCCAG00000031999) #20	IKZF4 (ENSCCAG00000021268) #21	ENSCCAG00000026487 ##22	ENSCCAG00000035954
Strepsirrhini	ANCESTRAL SPECIES	3	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281.m.a #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a #29	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37
Lemuriformes	ANCESTRAL SPECIES	1	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281.m.a #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a #29	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37
Lemuriformes_a	ANCESTRAL SPECIES	27	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281.m.a #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a #29	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37
Greater bamboo lemur	MODERN SPECIES	128								MMP19 (ENSPSMG00000024649) #14	PYM1 (ENSPSMG00000024631) #15	DGKA (ENSPSMG00000024610) #16	PMEL (ENSPSMG00000024579) #17	CDK2 (ENSPSMG00000024548) #18	RAB5B (ENSPSMG00000024526) #19	SUOX (ENSPSMG00000024511) #20	IKZF4 (ENSPSMG00000024506) #21	ENSPSMG00000024496 ##22	ERBB3 (ENSPSMG00000024473) #23	PA2G4 (ENSPSMG00000024418) #24	ENSPSMG00000024405	ZC3H10 (ENSPSMG00000024404) #26	ESYT1 (ENSPSMG00000024396) #27	ENSPSMG00000024364 #28	SMARCC2 (ENSPSMG00000024187) #30	RNF41 (ENSPSMG00000024025) #31	NABP2 (ENSPSMG00000024009) #32	SLC39A5 (ENSPSMG00000024003) #33	ENSPSMG00000023999	ANKRD52 (ENSPSMG00000023981) #34	COQ10A (ENSPSMG00000023940) #35	CS (ENSPSMG00000023923) #36	CNPY2 (ENSPSMG00000023904) #37
Coquerels sifaka	MODERN SPECIES	91	RDH5 (ENSPCOG00000021400) #8	CD63 (ENSPCOG00000020798) #9	GDF11 (ENSPCOG00000023892) #10	ENSPCOG00000027964 #11	ORMDL2 (ENSPCOG00000012665) #12	DNAJC14 (ENSPCOG00000015835) #13	ENSPCOG00000014962	MMP19 (ENSPCOG00000014267) #14	PYM1 (ENSPCOG00000019706) #15	DGKA (ENSPCOG00000011621) #16	PMEL (ENSPCOG00000014006) #17	CDK2 (ENSPCOG00000028348) #18	RAB5B (ENSPCOG00000016461) #19	SUOX (ENSPCOG00000015024) #20	IKZF4 (ENSPCOG00000027845) #21	ENSPCOG00000027943 ##22	ERBB3 (ENSPCOG00000026346) #23	PA2G4 (ENSPCOG00000015514) #24	ENSPCOG00000027941	ZC3H10 (ENSPCOG00000012389) #26	ESYT1 (ENSPCOG00000008657) #27	MYL6B (ENSPCOG00000008944) #28	MYL6 (ENSPCOG00000019144) #29	SMARCC2 (ENSPCOG00000027909) #30	RNF41 (ENSPCOG00000003362) #31	NABP2 (ENSPCOG00000014721) #32	SLC39A5 (ENSPCOG00000007171) #33	ANKRD52 (ENSPCOG00000015876) #34	COQ10A (ENSPCOG00000018212) #35	ENSPCOG00000019826 #36	CNPY2 (ENSPCOG00000019272) #37
Mouse lemur	DUPLICATION
Mouse lemur	MODERN SPECIES	11	ENSMICG00000037474	ENSMICG00000045385	ENSMICG00000016361	ANKRD13C (ENSMICG00000016341)	SRSF11 (ENSMICG00000005537)	LRRC40 (ENSMICG00000046390)	LRRC7 (ENSMICG00000005504)	DEPDC1 (ENSMICG00000002794)	RPE65 (ENSMICG00000002782)	WLS (ENSMICG00000010218)	ENSMICG00000026786	GNG12 (ENSMICG00000045755)	GADD45A (ENSMICG00000037822)	ENSMICG00000017733	IL12RB2 (ENSMICG00000017732)	ENSMICG00000046171 ##22	IL23R (ENSMICG00000000494)	C1orf141 (ENSMICG00000004483)	SLC35D1 (ENSMICG00000004473)	MIER1 (ENSMICG00000004461)	ENSMICG00000043215	INSL5 (ENSMICG00000047927)	DYNLT5 (ENSMICG00000046099)	ENSMICG00000035331	SGIP1 (ENSMICG00000004414)	ENSMICG00000044205	PDE4B (ENSMICG00000008570)	ENSMICG00000028091	LEPR (ENSMICG00000012143)	LEPROT (ENSMICG00000032518)	DNAJC6 (ENSMICG00000006518)
Mouse lemur	MODERN SPECIES	5	LRRC2 (ENSMICG00000016483)	ENSMICG00000016492	ENSMICG00000043511	FAM240A (ENSMICG00000043115)	ENSMICG00000037239	ALS2CL (ENSMICG00000016507)	TMIE (ENSMICG00000028660)	ENSMICG00000044328	ENSMICG00000016545	ENSMICG00000029208	MYL3 (ENSMICG00000017651) ##28	PTH1R (ENSMICG00000017652)	CCDC12 (ENSMICG00000032886)	NBEAL2 (ENSMICG00000017654)	SETD2 (ENSMICG00000038231)	ENSMICG00000042677 ##22	KIF9 (ENSMICG00000017656)	KLHL18 (ENSMICG00000017657)	ENSMICG00000045904	PTPN23 (ENSMICG00000013640)	SCAP (ENSMICG00000013666)	ELP6 (ENSMICG00000013709)	CSPG5 (ENSMICG00000013714)	SMARCC1 (ENSMICG00000013719)	ENSMICG00000026360	ENSMICG00000045835	DHX30 (ENSMICG00000008784)	ENSMICG00000008814	ENSMICG00000036510	CDC25A (ENSMICG00000000733)	CAMP (ENSMICG00000000736)
Laurasiatheria	ANCESTRAL SPECIES	6	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00910000147679	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00950000185738	ENSGT00390000002517.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a #29	ENSGT01030000234570.d.b.a.a.a.b.b ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519	ENSGT00950000182908.B #34
Laurasiatheria_a	ANCESTRAL SPECIES	6	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00910000147679	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00950000185738	ENSGT00390000002517.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.b ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519	ENSGT00950000182908.B #34	ENSGT00940000160056 #35
Laurasiatheria_b	ANCESTRAL SPECIES	6	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00910000147679	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00950000185738	ENSGT00390000002517.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.b ##28	ENSGT01030000234570.d.b.a.a.a.b.a.a #29	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519	ENSGT00950000182908.B #34
Carnivora	ANCESTRAL SPECIES	3	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a.q.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00910000147679	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.b.a ##28	ENSGT01030000234570.d.b.a.a.a.b.a.b.b ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36
Felidae	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.b ##22
Cat	MODERN SPECIES	238	RDH5 (ENSFCAG00000013960) #8	CD63 (ENSFCAG00000041277) #9	GDF11 (ENSFCAG00000027442) #10	SARNP (ENSFCAG00000037076) #11	ENSFCAG00000039824 #12	DNAJC14 (ENSFCAG00000013965) #13	TMEM198B (ENSFCAG00000044351)	MMP19 (ENSFCAG00000013966) #14	PYM1 (ENSFCAG00000013967) #15	DGKA (ENSFCAG00000013969) #16	PMEL (ENSFCAG00000013970) #17	CDK2 (ENSFCAG00000013973) #18	RAB5B (ENSFCAG00000013974) #19	SUOX (ENSFCAG00000026290) #20	IKZF4 (ENSFCAG00000029852) #21	ENSFCAG00000013977 ##22	ERBB3 (ENSFCAG00000014859) #23	PA2G4 (ENSFCAG00000014860) #24	RPL41 (ENSFCAG00000041907)	ZC3H10 (ENSFCAG00000049629) #26	ESYT1 (ENSFCAG00000014861) #27	MYL6B (ENSFCAG00000014863) #28	MYL6 (ENSFCAG00000014865) ##28	SMARCC2 (ENSFCAG00000014866) #30	RNF41 (ENSFCAG00000040993) #31	NABP2 (ENSFCAG00000012015) #32	SLC39A5 (ENSFCAG00000012016) #33	ANKRD52 (ENSFCAG00000012017) #34	COQ10A (ENSFCAG00000012018) #35	CS (ENSFCAG00000012019) #36	CNPY2 (ENSFCAG00000012020) #37
Caniformia	ANCESTRAL SPECIES	20	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a.q.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00910000147679	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a #29	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37
Caniformia_b	ANCESTRAL SPECIES	18	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a.q.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.b.a ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37	ENSGT00390000013978.d
Mustelinae	ANCESTRAL SPECIES	61	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a.q.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.b.a ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37	ENSGT00390000013978.d
American mink	MODERN SPECIES	76	CD63 (ENSNVIG00000021816) #9	GDF11 (ENSNVIG00000021844) #10	SARNP (ENSNVIG00000021853) #11	ENSNVIG00000021869 #12	DNAJC14 (ENSNVIG00000021878) #13	ENSNVIG00000021900	MMP19 (ENSNVIG00000021905) #14	PYM1 (ENSNVIG00000021920) #15	ENSNVIG00000021934	DGKA (ENSNVIG00000021940) #16	PMEL (ENSNVIG00000022014) #17	CDK2 (ENSNVIG00000022106) #18	RAB5B (ENSNVIG00000022167) #19	SUOX (ENSNVIG00000022186) #20	IKZF4 (ENSNVIG00000022197) #21	ENSNVIG00000022221 ##22	ENSNVIG00000022250	ENSNVIG00000022251	ERBB3 (ENSNVIG00000022259) #23	ENSNVIG00000022300 #24	ENSNVIG00000022361	ZC3H10 (ENSNVIG00000022364) #26	ESYT1 (ENSNVIG00000022370) #27	MYL6B (ENSNVIG00000022394) #28	MYL6 (ENSNVIG00000022413) ##28	SMARCC2 (ENSNVIG00000022466) #30	RNF41 (ENSNVIG00000022515) #31	NABP2 (ENSNVIG00000022526) #32	SLC39A5 (ENSNVIG00000022541) #33	ANKRD52 (ENSNVIG00000022558) #34	COQ10A (ENSNVIG00000022571) #35
Ursidae	ANCESTRAL SPECIES	13	ENSGT00940000161168 #8	ENSGT00940000156832.r.b #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a.q.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a.f #17	ENSGT00940000159517.m #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.b ##28	ENSGT01030000234570.d.b.a.a.a.b.a.b.a ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37
Ursus	ANCESTRAL SPECIES	23	ENSGT00940000161168 #8	ENSGT00940000156832.r.b #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a.q.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a.f #17	ENSGT00940000159517.m #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.b ##28	ENSGT01030000234570.d.b.a.a.a.b.a.b.b ##28	ENSGT00940000155746.nd #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37
Polar bear	MODERN SPECIES	113	RDH5 (ENSUMAG00000016160) #8	CD63 (ENSUMAG00000016164) #9	GDF11 (ENSUMAG00000016174) #10	SARNP (ENSUMAG00000016187) #11	ENSUMAG00000016216 #12	DNAJC14 (ENSUMAG00000016217) #13	ENSUMAG00000016223	MMP19 (ENSUMAG00000016229) #14	PYM1 (ENSUMAG00000016241) #15	DGKA (ENSUMAG00000016243) #16	PMEL (ENSUMAG00000016253) #17	ENSUMAG00000016257 #18	RAB5B (ENSUMAG00000016263) #19	SUOX (ENSUMAG00000016264) #20	IKZF4 (ENSUMAG00000016268) #21	ENSUMAG00000016279 ##22	ERBB3 (ENSUMAG00000016351) #23	PA2G4 (ENSUMAG00000016773) #24	ZC3H10 (ENSUMAG00000016780) #26	ESYT1 (ENSUMAG00000016782) #27	MYL6 (ENSUMAG00000016789) ##28	SMARCC2 (ENSUMAG00000016793) #30	RNF41 (ENSUMAG00000016812) #31	NABP2 (ENSUMAG00000016815) #32	SLC39A5 (ENSUMAG00000016818) #33	ENSUMAG00000016831 #34	COQ10A (ENSUMAG00000016840) #35	CS (ENSUMAG00000016853) #36	CNPY2 (ENSUMAG00000017016) #37	PAN2 (ENSUMAG00000017020)	IL23A (ENSUMAG00000017034)
Giant Panda	MODERN SPECIES	6	RDH5 (ENSAMEG00000011837) #8	ENSAMEG00000011819 #9	GDF11 (ENSAMEG00000011806) #10	SARNP (ENSAMEG00000011769) #11	ORMDL2 (ENSAMEG00000003047) #12	DNAJC14 (ENSAMEG00000003053) #13	ENSAMEG00000003061	MMP19 (ENSAMEG00000003068) #14	PYM1 (ENSAMEG00000025799) #15	DGKA (ENSAMEG00000003094) #16	PMEL (ENSAMEG00000003145) #17	ENSAMEG00000003168 #18	RAB5B (ENSAMEG00000003196) #19	SUOX (ENSAMEG00000003226) #20	IKZF4 (ENSAMEG00000003228) #21	RPS26 (ENSAMEG00000003260) ##22	ENSAMEG00000025903	ERBB3 (ENSAMEG00000003273) #23	PA2G4 (ENSAMEG00000003380) #24	ENSAMEG00000031225	ZC3H10 (ENSAMEG00000019365) #26	ESYT1 (ENSAMEG00000003434) #27	MYL6B (ENSAMEG00000003509) #28	ENSAMEG00000012586 ##28	SMARCC2 (ENSAMEG00000003536) #30	RNF41 (ENSAMEG00000003610) #31	NABP2 (ENSAMEG00000003630) #32	SLC39A5 (ENSAMEG00000003645) #33	ANKRD52 (ENSAMEG00000003658) #34	COQ10A (ENSAMEG00000003762) #35	CS (ENSAMEG00000003774) #36
Canidae	ANCESTRAL SPECIES	44	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a.q.b.a.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00910000147679	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a #29	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37
Red fox	MODERN SPECIES	38	CD63 (ENSVVUG00000022786) #9	GDF11 (ENSVVUG00000022784) #10	SARNP (ENSVVUG00000022779) #11	ORMDL2 (ENSVVUG00000022761) #12	DNAJC14 (ENSVVUG00000022759) #13	ENSVVUG00000022755	MMP19 (ENSVVUG00000022753) #14	PYM1 (ENSVVUG00000022749) #15	DGKA (ENSVVUG00000022182) #16	PMEL (ENSVVUG00000022168) #17	CDK2 (ENSVVUG00000022126) #18	RAB5B (ENSVVUG00000022054) #19	ENSVVUG00000022046	SUOX (ENSVVUG00000022043) #20	IKZF4 (ENSVVUG00000022020) #21	ENSVVUG00000022013 ##22	ERBB3 (ENSVVUG00000022004) #23	PA2G4 (ENSVVUG00000022000) #24	ZC3H10 (ENSVVUG00000021999) #26	ESYT1 (ENSVVUG00000021991) #27	MYL6B (ENSVVUG00000021989) #28	ENSVVUG00000021976 #29	SMARCC2 (ENSVVUG00000021964) #30	RNF41 (ENSVVUG00000021963) #31	NABP2 (ENSVVUG00000021962) #32	SLC39A5 (ENSVVUG00000021961) #33	ANKRD52 (ENSVVUG00000021960) #34	COQ10A (ENSVVUG00000021958) #35	CS (ENSVVUG00000021881) #36	CNPY2 (ENSVVUG00000021880) #37	PAN2 (ENSVVUG00000021878)
Canis_lupus	ANCESTRAL SPECIES	40	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a.q.b.a.a #12	ENSGT00940000155637.e #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00390000002517.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a #29	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36
Dingo	DUPLICATION
Dingo	MODERN SPECIES	159	B3GNT5 (ENSCAFG00020001231)	MCF2L2 (ENSCAFG00020001083)	ENSCAFG00020001021	MCCC1 (ENSCAFG00020001000)	DCUN1D1 (ENSCAFG00020000986)	ATP11B (ENSCAFG00020000213)	ENSCAFG00020023545	SOX2 (ENSCAFG00020023541)	ENSCAFG00020023532	FXR1 (ENSCAFG00020023527)	CCDC39 (ENSCAFG00020023514)	TTC14 (ENSCAFG00020023505)	PEX5L (ENSCAFG00020023148)	ENSCAFG00020023137	USP13 (ENSCAFG00020023133)	ENSCAFG00020023131 ##22	ENSCAFG00020023130	ENSCAFG00020023129	MRPL47 (ENSCAFG00020023127)	ACTL6A (ENSCAFG00020023126)	GNB4 (ENSCAFG00020023115)	MFN1 (ENSCAFG00020023114)	ZNF639 (ENSCAFG00020023113)	KCNMB3 (ENSCAFG00020023112)	PIK3CA (ENSCAFG00020023109)	ZMAT3 (ENSCAFG00020023107)	ENSCAFG00020023106	ENSCAFG00020023104	ENSCAFG00020023101	ENSCAFG00020023100	ENSCAFG00020023098
Dingo	MODERN SPECIES	374	RDH5 (ENSCAFG00020026110) #8	CD63 (ENSCAFG00020026109) #9	GDF11 (ENSCAFG00020026108) #10	SARNP (ENSCAFG00020026107) #11	ENSCAFG00020026106 #12	DNAJC14 (ENSCAFG00020026104) #13	ENSCAFG00020026102	MMP19 (ENSCAFG00020026100) #14	PYM1 (ENSCAFG00020026099) #15	DGKA (ENSCAFG00020026097) #16	ENSCAFG00020026096 #17	CDK2 (ENSCAFG00020026095) #18	RAB5B (ENSCAFG00020026094) #19	SUOX (ENSCAFG00020026092) #20	IKZF4 (ENSCAFG00020026090) #21	ENSCAFG00020026088 ##22	ERBB3 (ENSCAFG00020026023) #23	PA2G4 (ENSCAFG00020026003) #24	ZC3H10 (ENSCAFG00020025996) #26	ESYT1 (ENSCAFG00020025839) #27	MYL6B (ENSCAFG00020025772) #28	ENSCAFG00020025744 #29	SMARCC2 (ENSCAFG00020025023) #30	RNF41 (ENSCAFG00020024923) #31	NABP2 (ENSCAFG00020024920) #32	SLC39A5 (ENSCAFG00020024919) #33	ENSCAFG00020024918	ANKRD52 (ENSCAFG00020024912) #34	COQ10A (ENSCAFG00020024907) #35	CS (ENSCAFG00020024902) #36	CNPY2 (ENSCAFG00020024900) #37
Laurasiatheria_c	ANCESTRAL SPECIES	5	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00950000185738	ENSGT00390000002517.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.b ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36
Equus	ANCESTRAL SPECIES	43	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00950000185738	ENSGT00390000002517.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a #29	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36
Donkey	MODERN SPECIES	14	RDH5 (ENSEASG00005002200) #8	CD63 (ENSEASG00005002208) #9	GDF11 (ENSEASG00005002214) #10	SARNP (ENSEASG00005029664) #11	ORMDL2 (ENSEASG00005026943) #12	DNAJC14 (ENSEASG00005002245) #13	ENSEASG00005002254	MMP19 (ENSEASG00005002260) #14	PYM1 (ENSEASG00005031669) #15	DGKA (ENSEASG00005002337) #16	PMEL (ENSEASG00005002739) #17	CDK2 (ENSEASG00005002820) #18	RAB5B (ENSEASG00005002862) #19	SUOX (ENSEASG00005002882) #20	IKZF4 (ENSEASG00005002885) #21	ENSEASG00005002890 ##22	ENSEASG00005035372	ERBB3 (ENSEASG00005002897) #23	PA2G4 (ENSEASG00005002978) #24	ZC3H10 (ENSEASG00005036350) #26	ESYT1 (ENSEASG00005003701) #27	MYL6B (ENSEASG00005004278) #28	MYL6 (ENSEASG00005031471) #29	SMARCC2 (ENSEASG00005004507) #30	RNF41 (ENSEASG00005004896) #31	NABP2 (ENSEASG00005004905) #32	SLC39A5 (ENSEASG00005004911) #33	ANKRD52 (ENSEASG00005004936) #34	COQ10A (ENSEASG00005005003) #35	CS (ENSEASG00005005030) #36	CNPY2 (ENSEASG00005005179) #37
Chiroptera	ANCESTRAL SPECIES	4	ENSGT00940000161168 #8	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.b ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B.p #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37	ENSGT00390000013978.d
Megabat	MODERN SPECIES	2828											PMEL (ENSPVAG00000007554) #17	CDK2 (ENSPVAG00000007555) #18	RAB5B (ENSPVAG00000007556) #19	SUOX (ENSPVAG00000007557) #20	IKZF4 (ENSPVAG00000007558) #21	ENSPVAG00000007559 ##22	ERBB3 (ENSPVAG00000007560) #23	PA2G4 (ENSPVAG00000007563) #24	ZC3H10 (ENSPVAG00000007566) #26	ESYT1 (ENSPVAG00000007567) #27	MYL6B (ENSPVAG00000007571) #28	MYL6 (ENSPVAG00000007572) ##28	SMARCC2 (ENSPVAG00000007574) #30	RNF41 (ENSPVAG00000007577) #31	NABP2 (ENSPVAG00000007578) #32	SLC39A5 (ENSPVAG00000007580) #33	ANKRD52 (ENSPVAG00000007582) #34	COQ10A (ENSPVAG00000007585) #35	CS (ENSPVAG00000007587) #36	CNPY2 (ENSPVAG00000007589) #37	PAN2 (ENSPVAG00000007591)
Microchiroptera	ANCESTRAL SPECIES	2	ENSGT00940000156832 #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.b ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B.p #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37	ENSGT00390000013978.d
Microbat	DUPLICATION
Microbat	MODERN SPECIES	949	HELQ (ENSMLUG00000017053)	HPSE (ENSMLUG00000015271)	COQ2 (ENSMLUG00000015267)	ENSMLUG00000003019	ENSMLUG00000028471	COPS4 (ENSMLUG00000003011)	ENSMLUG00000008504	LIN54 (ENSMLUG00000003001)	THAP9 (ENSMLUG00000002988)	SEC31A (ENSMLUG00000004707)	SCD5 (ENSMLUG00000001326)	TMEM150C (ENSMLUG00000024231)	ENOPH1 (ENSMLUG00000014460)	HNRNPDL (ENSMLUG00000014452)	HNRNPD (ENSMLUG00000010628)	ENSMLUG00000026634 ##22	ENSMLUG00000025219	RASGEF1B (ENSMLUG00000017316)	PRKG2 (ENSMLUG00000017311)	BMP3 (ENSMLUG00000000163)	ENSMLUG00000000161	ENSMLUG00000015854	FGF5 (ENSMLUG00000000156)	PRDM8 (ENSMLUG00000030190)	ANTXR2 (ENSMLUG00000015495)	GK2 (ENSMLUG00000013156)	ENSMLUG00000004070	PAQR3 (ENSMLUG00000029116)	BMP2K (ENSMLUG00000008985)	ANXA3 (ENSMLUG00000012732)	ENSMLUG00000012678
Microbat	MODERN SPECIES	1056	RDH5 (ENSMLUG00000010421) #8	CD63 (ENSMLUG00000010430) #9	GDF11 (ENSMLUG00000003560) #10	SARNP (ENSMLUG00000003565) #11	ORMDL2 (ENSMLUG00000003575) #12	DNAJC14 (ENSMLUG00000003578) #13	ENSMLUG00000028917	MMP19 (ENSMLUG00000003581) #14	PYM1 (ENSMLUG00000003586) #15	DGKA (ENSMLUG00000003590) #16	PMEL (ENSMLUG00000003597) #17	CDK2 (ENSMLUG00000004713) #18	RAB5B (ENSMLUG00000003602) #19	SUOX (ENSMLUG00000003606) #20	IKZF4 (ENSMLUG00000026014) #21	ENSMLUG00000029968 ##22	ERBB3 (ENSMLUG00000000801) #23	ENSMLUG00000000815 #24	ZC3H10 (ENSMLUG00000006564) #26	ESYT1 (ENSMLUG00000006568) #27	MYL6B (ENSMLUG00000006591) #28	MYL6 (ENSMLUG00000006614) ##28	SMARCC2 (ENSMLUG00000006625) #30	ENSMLUG00000022653	RNF41 (ENSMLUG00000006057) #31	NABP2 (ENSMLUG00000006646) #32	SLC39A5 (ENSMLUG00000006654) #33	ANKRD52 (ENSMLUG00000006674) #34	COQ10A (ENSMLUG00000006706) #35	CS (ENSMLUG00000006712) #36	CNPY2 (ENSMLUG00000006725) #37
Artiodactyla	ANCESTRAL SPECIES	6	ENSGT00940000156832.p.a #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00910000147679	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.b ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37
Artiodactyla_a	ANCESTRAL SPECIES	5	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00910000147679	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.a #22	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.b ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37
Artiodactyla_b	ANCESTRAL SPECIES	5	ENSGT00940000156832.p.a #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00910000147679	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.b ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37
Pecora	ANCESTRAL SPECIES	3	ENSGT00940000156832.p.a #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517.o #18	ENSGT00940000160756 #19	ENSGT00910000147679	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.b ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	1038																ENSCHYG00000011388 ##22
Yarkand deer	MODERN SPECIES	22	ENSCHYG00000006488 #9	GDF11 (ENSCHYG00000006467) #10	ENSCHYG00000006344 #11	ORMDL2 (ENSCHYG00000006302) #12	DNAJC14 (ENSCHYG00000006233) #13	ENSCHYG00000004414	MMP19 (ENSCHYG00000004395) #14	PYM1 (ENSCHYG00000004372) #15	DGKA (ENSCHYG00000004355) #16	PMEL (ENSCHYG00000004318) #17	ENSCHYG00000004236 #18	RAB5B (ENSCHYG00000004198) #19	ENSCHYG00000004191	SUOX (ENSCHYG00000004176) #20	IKZF4 (ENSCHYG00000004124) #21	ENSCHYG00000004114 ##22	ERBB3 (ENSCHYG00000004075) #23	ENSCHYG00000004033 #24	ENSCHYG00000004016	ZC3H10 (ENSCHYG00000004011) #26	ESYT1 (ENSCHYG00000003948) #27	MYL6B (ENSCHYG00000003917) #28	MYL6 (ENSCHYG00000003875) ##28	SMARCC2 (ENSCHYG00000003682) #30	RNF41 (ENSCHYG00000003622) #31	NABP2 (ENSCHYG00000003587) #32	SLC39A5 (ENSCHYG00000003558) #33	ENSCHYG00000003551	ANKRD52 (ENSCHYG00000003415) #34	COQ10A (ENSCHYG00000003374) #35	CS (ENSCHYG00000003344) #36
Percora_a	ANCESTRAL SPECIES	3	ENSGT00940000156832.p.a #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517.o #18	ENSGT00940000160756 #19	ENSGT00910000147679	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.b ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37
Siberian musk deer	MODERN SPECIES	1241	RDH5 (ENSMMSG00000013617) #8	ENSMMSG00000013637 #9	GDF11 (ENSMMSG00000013666) #10	SARNP (ENSMMSG00000013689) #11	ORMDL2 (ENSMMSG00000013704) #12	DNAJC14 (ENSMMSG00000013722) #13	ENSMMSG00000013741	MMP19 (ENSMMSG00000013763) #14	PYM1 (ENSMMSG00000013789) #15	DGKA (ENSMMSG00000013815) #16	PMEL (ENSMMSG00000013868) #17	ENSMMSG00000014039 #18	RAB5B (ENSMMSG00000014254) #19	SUOX (ENSMMSG00000014283) #20	IKZF4 (ENSMMSG00000014312) #21	ENSMMSG00000014353 ##22	ENSMMSG00000014368	ERBB3 (ENSMMSG00000014410) #23	PA2G4 (ENSMMSG00000014562) #24	ENSMMSG00000014607	ZC3H10 (ENSMMSG00000014626) #26	ESYT1 (ENSMMSG00000014644) #27	ENSMMSG00000014676 #28	MYL6 (ENSMMSG00000014706) ##28	SMARCC2 (ENSMMSG00000014846) #30	RNF41 (ENSMMSG00000014961) #31	NABP2 (ENSMMSG00000014989) #32	SLC39A5 (ENSMMSG00000015022) #33	ENSMMSG00000015053	ANKRD52 (ENSMMSG00000015065) #34	COQ10A (ENSMMSG00000015112) #35
Bovidae	ANCESTRAL SPECIES	3	ENSGT00940000156832.p.a #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517.o #18	ENSGT00940000160756 #19	ENSGT00910000147679	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.b ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37
Bovinae	ANCESTRAL SPECIES	17	ENSGT00940000161168 #8	ENSGT00940000156832.p.a #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517.o #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.b.a ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813.o #36	ENSGT00940000161158 #37
American bison	MODERN SPECIES	3043	RDH5 (ENSBBBG00000014340) #8	ENSBBBG00000007986 #9	GDF11 (ENSBBBG00000003243) #10	SARNP (ENSBBBG00000003239) #11	ORMDL2 (ENSBBBG00000014266) #12	DNAJC14 (ENSBBBG00000003231) #13	ENSBBBG00000003228	MMP19 (ENSBBBG00000014232) #14	PYM1 (ENSBBBG00000014220) #15	DGKA (ENSBBBG00000007491) #16	PMEL (ENSBBBG00000014182) #17	CDK2 (ENSBBBG00000014128) #18	RAB5B (ENSBBBG00000003151) #19	SUOX (ENSBBBG00000014069) #20	IKZF4 (ENSBBBG00000014059) #21	ENSBBBG00000014021 ##22	ERBB3 (ENSBBBG00000014015) #23	PA2G4 (ENSBBBG00000003066) #24	ENSBBBG00000013956	ZC3H10 (ENSBBBG00000007405) #26	ESYT1 (ENSBBBG00000003044) #27	MYL6B (ENSBBBG00000003018) #28	MYL6 (ENSBBBG00000013883) ##28	SMARCC2 (ENSBBBG00000013833) #30	RNF41 (ENSBBBG00000002877) #31	NABP2 (ENSBBBG00000002860) #32	ENSBBBG00000002851 #33	ANKRD52 (ENSBBBG00000013650) #34	COQ10A (ENSBBBG00000013622) #35	ENSBBBG00000009053 #36	CNPY2 (ENSBBBG00000013563) #37
Bos	ANCESTRAL SPECIES	2	ENSGT00940000161168 #8	ENSGT00940000156832.p.a #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517.o #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a #29	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813.o #36	ENSGT00940000161158 #37
Bos_b	ANCESTRAL SPECIES	4	ENSGT00940000161168 #8	ENSGT00940000156832.p.a #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517.o #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.b ##28	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00910000147519	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813.o #36	ENSGT00940000161158 #37
Cow	MODERN SPECIES	24	RDH5 (ENSBTAG00000011927) #8	CD63 (ENSBTAG00000011931) #9	GDF11 (ENSBTAG00000007417) #10	SARNP (ENSBTAG00000020662) #11	ORMDL2 (ENSBTAG00000020663) #12	DNAJC14 (ENSBTAG00000020664) #13	TMEM198B (ENSBTAG00000009049)	MMP19 (ENSBTAG00000009051) #14	PYM1 (ENSBTAG00000031146) #15	DGKA (ENSBTAG00000004018) #16	PMEL (ENSBTAG00000004019) #17	CDK2 (ENSBTAG00000004021) #18	RAB5B (ENSBTAG00000014129) #19	SUOX (ENSBTAG00000006160) #20	IKZF4 (ENSBTAG00000012636) #21	RPS26 (ENSBTAG00000038896) ##22	ERBB3 (ENSBTAG00000010444) #23	PA2G4 (ENSBTAG00000010451) #24	ZC3H10 (ENSBTAG00000009542) #26	ESYT1 (ENSBTAG00000009543) #27	MYL6B (ENSBTAG00000031217) #28	MYL6 (ENSBTAG00000010799) ##28	SMARCC2 (ENSBTAG00000014697) #30	RNF41 (ENSBTAG00000026754) #31	NABP2 (ENSBTAG00000002798) #32	SLC39A5 (ENSBTAG00000002799) #33	ENSBTAG00000052361	ANKRD52 (ENSBTAG00000011762) #34	COQ10A (ENSBTAG00000004367) #35	CS (ENSBTAG00000004371) #36	CNPY2 (ENSBTAG00000004374) #37
Hybrid Bos Indicus	MODERN SPECIES	24	RDH5 (ENSBIXG00005015946) #8	ENSBIXG00005015903 #9	GDF11 (ENSBIXG00005002492) #10	SARNP (ENSBIXG00005002490) #11	ORMDL2 (ENSBIXG00005000164) #12	DNAJC14 (ENSBIXG00005015817) #13	ENSBIXG00005015771	MMP19 (ENSBIXG00005015746) #14	PYM1 (ENSBIXG00005015717) #15	DGKA (ENSBIXG00005002447) #16	PMEL (ENSBIXG00005007548) #17	CDK2 (ENSBIXG00005015436) #18	RAB5B (ENSBIXG00005006506) #19	SUOX (ENSBIXG00005002249) #20	IKZF4 (ENSBIXG00005015263) #21	ENSBIXG00005015184 ##22	ERBB3 (ENSBIXG00005015138) #23	PA2G4 (ENSBIXG00005002220) #24	ENSBIXG00005015068	ZC3H10 (ENSBIXG00005015060) #26	ESYT1 (ENSBIXG00005015035) #27	MYL6B (ENSBIXG00005015001) #28	MYL6 (ENSBIXG00005005709) ##28	SMARCC2 (ENSBIXG00005007014) #30	RNF41 (ENSBIXG00005014813) #31	NABP2 (ENSBIXG00005014783) #32	SLC39A5 (ENSBIXG00005006435) #33	ENSBIXG00005014721	ANKRD52 (ENSBIXG00005014709) #34	COQ10A (ENSBIXG00005007275) #35	ENSBIXG00005005706 #36
Cetacea	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.b ##22
Blue whale	MODERN SPECIES	12	TLCD2 (ENSBMSG00010019174)	PRPF8 (ENSBMSG00010019132)	RILP (ENSBMSG00010019079)	SCARF1 (ENSBMSG00010019004)	SLC43A2 (ENSBMSG00010018713)	PITPNA (ENSBMSG00010018661)	INPP5K (ENSBMSG00010018621)	MYO1C (ENSBMSG00010018460)	CRK (ENSBMSG00010018408)	ENSBMSG00010018391	YWHAE (ENSBMSG00010018353)	DOC2B (ENSBMSG00010018303)	RPH3AL (ENSBMSG00010018268)	ENSBMSG00010018247	RFLNB (ENSBMSG00010018232)	ENSBMSG00010018213 ##22	VPS53 (ENSBMSG00010018077)	TLCD3A (ENSBMSG00010018000)	GEMIN4 (ENSBMSG00010017959)	GLOD4 (ENSBMSG00010017934)	MRM3 (ENSBMSG00010017916)	NXN (ENSBMSG00010017866)	TIMM22 (ENSBMSG00010017831)	ABR (ENSBMSG00010017514)	BHLHA9 (ENSBMSG00010017399)	TRARG1 (ENSBMSG00010017380)	GOSR1 (ENSBMSG00010017300)	CPD (ENSBMSG00010017172)	TMIGD1 (ENSBMSG00010017079)	ENSBMSG00010017005	SLC6A4 (ENSBMSG00010016971)
Odontoceti	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.b ##22
Sperm whale	MODERN SPECIES	3	KCNF1 (ENSPCTG00005013707)	PDIA6 (ENSPCTG00005013450)	ATP6V1C2 (ENSPCTG00005013317)	NOL10 (ENSPCTG00005013060)	ODC1 (ENSPCTG00005012986)	HPCAL1 (ENSPCTG00005012942)	RRM2 (ENSPCTG00005012888)	ENSPCTG00005012849	TAF1B (ENSPCTG00005012791)	YWHAQ (ENSPCTG00005012710)	ENSPCTG00005012664	ADAM17 (ENSPCTG00005012570)	IAH1 (ENSPCTG00005012450)	CPSF3 (ENSPCTG00005011872)	ENSPCTG00005011637	ENSPCTG00005011590 ##22	ASAP2 (ENSPCTG00005011387)	MBOAT2 (ENSPCTG00005011265)	KIDINS220 (ENSPCTG00005011195)	RNF144A (ENSPCTG00005011143)	RSAD2 (ENSPCTG00005011072)	CMPK2 (ENSPCTG00005011012)	ENSPCTG00005010966	COLEC11 (ENSPCTG00005010632)	RPS7 (ENSPCTG00005010552)	RNASEH1 (ENSPCTG00005010508)	ADI1 (ENSPCTG00005010460)	TRAPPC12 (ENSPCTG00005010367)	EIPR1 (ENSPCTG00005010312)	MYT1L (ENSPCTG00005007857)	PXDN (ENSPCTG00005007554)
Odontoceti_a	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.c.b ##22
Odontoceti_b	ANCESTRAL SPECIES	17	ENSGT00940000159818	ENSGT00390000001134.b	ENSGT00950000182994.A.n.a	ENSGT00390000000141	ENSGT00940000159611	ENSGT00520000059318	ENSGT00950000183121.b.b.b.a	ENSGT00530000063666.a.a.a	ENSGT00390000008591	ENSGT00390000005534.b.b.d	ENSGT00940000159242	ENSGT00940000161429	ENSGT00940000164351	ENSGT00390000011425.A	ENSGT00940000156017	ENSGT00390000002517.a.a.c.b ##22	ENSGT00950000183107.a.b.b	ENSGT00940000162488	ENSGT00950000182832.D.b	ENSGT00940000161206	ENSGT00950000183115.b.b	ENSGT01030000234518.D	ENSGT01100000263536.A.a.a.a	ENSGT01100000263536.A.a.a.b	ENSGT01040000240444.A.a.a.a.b	ENSGT00940000163808	ENSGT00940000161697	ENSGT00390000008820.e.b	ENSGT00940000164489	ENSGT01090000260912.A	ENSGT00940000159568
Vaquita	MODERN SPECIES	34	ENSPSNG00000017474	KLHL4 (ENSPSNG00000017273)	DACH2 (ENSPSNG00000016658)	CHM (ENSPSNG00000016502)	ENSPSNG00000016452	POF1B (ENSPSNG00000016065)	ZNF711 (ENSPSNG00000015952)	ENSPSNG00000015761	ENSPSNG00000015676	APOOL (ENSPSNG00000015621)	HDX (ENSPSNG00000015468)	RPS6KA6 (ENSPSNG00000014893)	POU3F4 (ENSPSNG00000014834)	ENSPSNG00000014813	SH3BGRL (ENSPSNG00000014759)	ENSPSNG00000014737 ##22	ENSPSNG00000014508	ENSPSNG00000014459	BRWD3 (ENSPSNG00000014395)	TENT5D (ENSPSNG00000014369)	TBX22 (ENSPSNG00000014253)	ITM2A (ENSPSNG00000014072)	GPR174 (ENSPSNG00000014042)	ENSPSNG00000013978	P2RY10 (ENSPSNG00000013950)	LPAR4 (ENSPSNG00000013916)	RTL3 (ENSPSNG00000013887)	TAF9B (ENSPSNG00000013833)	PGK1 (ENSPSNG00000013773)	ENSPSNG00000013679	ENSPSNG00000013610
Monodontidae	ANCESTRAL SPECIES	6	ENSGT00940000161168 #8	ENSGT00940000156832.q #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637.d.a #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756.c.a #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00390000002517.b.hb ##22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.a.a #29	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37
Beluga whale	MODERN SPECIES	15	KLHL4 (ENSDLEG00000002692)	DACH2 (ENSDLEG00000002711)	CHM (ENSDLEG00000000210)	POF1B (ENSDLEG00000000273)	ENSDLEG00000000305	ZNF711 (ENSDLEG00000000338)	ENSDLEG00000000411	ENSDLEG00000000533	HDX (ENSDLEG00000000563)	RPS6KA6 (ENSDLEG00000000947)	ENSDLEG00000002260	POU3F4 (ENSDLEG00000002267)	ENSDLEG00000002271	ENSDLEG00000002284	SH3BGRL (ENSDLEG00000002296)	ENSDLEG00000002316 ##22	ENSDLEG00000002320	BRWD3 (ENSDLEG00000002333)	ENSDLEG00000002366	FAM46D (ENSDLEG00000002371)	ENSDLEG00000002378	TBX22 (ENSDLEG00000002390)	ITM2A (ENSDLEG00000002408)	GPR174 (ENSDLEG00000002420)	ENSDLEG00000002427	P2RY10 (ENSDLEG00000002430)	LPAR4 (ENSDLEG00000002433)	RTL3 (ENSDLEG00000002439)	TAF9B (ENSDLEG00000002449)	PGK1 (ENSDLEG00000002462)	ENSDLEG00000002472
Narwhal	DUPLICATION
Narwhal	MODERN SPECIES	309	CHM (ENSMMNG00015009797)	ENSMMNG00015009775	POF1B (ENSMMNG00015009745)	ZNF711 (ENSMMNG00015009729)	ENSMMNG00015009720	ENSMMNG00015009712	ENSMMNG00015009704	ENSMMNG00015009686	HDX (ENSMMNG00015009669)	ENSMMNG00015009659	RPS6KA6 (ENSMMNG00015009638)	ENSMMNG00015009625	ENSMMNG00015009619	ENSMMNG00015009610	SH3BGRL (ENSMMNG00015009604)	ENSMMNG00015009599 ##22	HMGN5 (ENSMMNG00015009591)	ENSMMNG00015009582	ENSMMNG00015009579	ENSMMNG00015009577	BRWD3 (ENSMMNG00015009554)	TENT5D (ENSMMNG00015009540)	ENSMMNG00015009536	TBX22 (ENSMMNG00015009523)	ENSMMNG00015009510	ITM2A (ENSMMNG00015009496)	ENSMMNG00015009482	P2RY10 (ENSMMNG00015009475)	LPAR4 (ENSMMNG00015009468)	RTL3 (ENSMMNG00015009461)	TAF9B (ENSMMNG00015009451)
Narwhal	MODERN SPECIES	313	RDH5 (ENSMMNG00015018110) #8	CD63 (ENSMMNG00015018140) #9	GDF11 (ENSMMNG00015018182) #10	SARNP (ENSMMNG00015018210) #11	ORMDL2 (ENSMMNG00015018233) #12	DNAJC14 (ENSMMNG00015018260) #13	ENSMMNG00015018286	MMP19 (ENSMMNG00015018316) #14	PYM1 (ENSMMNG00015018379) #15	DGKA (ENSMMNG00015018428) #16	PMEL (ENSMMNG00015018523) #17	CDK2 (ENSMMNG00015018631) #18	ENSMMNG00015018688 #19	SUOX (ENSMMNG00015018721) #20	IKZF4 (ENSMMNG00015018768) #21	ENSMMNG00015018818 ##22	ERBB3 (ENSMMNG00015018936) #23	PA2G4 (ENSMMNG00015019022) #24	ENSMMNG00015019061	ZC3H10 (ENSMMNG00015019079) #26	ESYT1 (ENSMMNG00015019100) #27	MYL6B (ENSMMNG00015019202) #28	MYL6 (ENSMMNG00015019266) ##28	SMARCC2 (ENSMMNG00015019406) #30	RNF41 (ENSMMNG00015019487) #31	NABP2 (ENSMMNG00015019510) #32	SLC39A5 (ENSMMNG00015019540) #33	ANKRD52 (ENSMMNG00015019573) #34	COQ10A (ENSMMNG00015019621) #35	CS (ENSMMNG00015019660) #36	CNPY2 (ENSMMNG00015019705) #37
Suina	ANCESTRAL SPECIES	4	ENSGT00940000161168 #8	ENSGT00940000156832.p.a #9	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a.c.b ##22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.a.a #28	ENSGT01030000234570.d.b.a.a.a.b.b ##28	ENSGT01030000234570.d.b.a.a.a.b.a.a #29	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000161158 #37
Pig	MODERN SPECIES	13	RDH5 (ENSSSCG00000000362) #8	CD63 (ENSSSCG00000000361) #9	GDF11 (ENSSSCG00000000363) #10	SARNP (ENSSSCG00000000364) #11	ORMDL2 (ENSSSCG00000000365) #12	DNAJC14 (ENSSSCG00000000366) #13	ENSSSCG00000000367	MMP19 (ENSSSCG00000000368) #14	PYM1 (ENSSSCG00000040825) #15	DGKA (ENSSSCG00000000370) #16	PMEL (ENSSSCG00000000371) #17	CDK2 (ENSSSCG00000037597) #18	RAB5B (ENSSSCG00000062039) #19	SUOX (ENSSSCG00000000376) #20	IKZF4 (ENSSSCG00000031139) #21	RPS26 (ENSSSCG00000053807) ##22	ERBB3 (ENSSSCG00000020725) #23	ENSSSCG00000000377 #24	ENSSSCG00000033310	ZC3H10 (ENSSSCG00000033568) #26	ESYT1 (ENSSSCG00000000379) #27	MYL6B (ENSSSCG00000063428) #28	MYL6 (ENSSSCG00000039506) #29	SMARCC2 (ENSSSCG00000000382) #30	RNF41 (ENSSSCG00000000383) #31	NABP2 (ENSSSCG00000000384) #32	SLC39A5 (ENSSSCG00000000385) #33	ANKRD52 (ENSSSCG00000000386) #34	COQ10A (ENSSSCG00000025190) #35	CS (ENSSSCG00000035686) #36	CNPY2 (ENSSSCG00000000394) #37
Chacoan peccary	MODERN SPECIES	900	RDH5 (ENSCWAG00000007750) #8	CD63 (ENSCWAG00000007674) #9	GDF11 (ENSCWAG00000007659) #10	SARNP (ENSCWAG00000007623) #11	ORMDL2 (ENSCWAG00000007593) #12	DNAJC14 (ENSCWAG00000007553) #13	ENSCWAG00000007525	MMP19 (ENSCWAG00000007496) #14	PYM1 (ENSCWAG00000007450) #15	DGKA (ENSCWAG00000007372) #16	PMEL (ENSCWAG00000007047) #17	CDK2 (ENSCWAG00000006872) #18	RAB5B (ENSCWAG00000006812) #19	SUOX (ENSCWAG00000006796) #20	IKZF4 (ENSCWAG00000006717) #21	ENSCWAG00000006680 ##22	ERBB3 (ENSCWAG00000006414) #23	ENSCWAG00000006270 #24	ENSCWAG00000006236	ZC3H10 (ENSCWAG00000006227) #26	ESYT1 (ENSCWAG00000006191) #27	MYL6B (ENSCWAG00000006123) #28	MYL6 (ENSCWAG00000006008) ##28	SMARCC2 (ENSCWAG00000005828) #30	RNF41 (ENSCWAG00000005761) #31	NABP2 (ENSCWAG00000005729) #32	SLC39A5 (ENSCWAG00000005681) #33	ANKRD52 (ENSCWAG00000005542) #34	COQ10A (ENSCWAG00000005423) #35	CS (ENSCWAG00000005353) #36	CNPY2 (ENSCWAG00000005326) #37
Eutheria	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Atlantogenata	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Afrotheria	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Tenrec	MODERN SPECIES	9246																ENSETEG00000006210 ##22
Boreoeutheria	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Laurasiatheria	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Laurasiatheria_a	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Laurasiatheria_b	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Carnivora	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Caniformia	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Caniformia_b	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Ursidae	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Ursus	DUPLICATION
Ursus	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d.a ##22
American black bear	MODERN SPECIES	4645																ENSUAMG00000023003 ##22
Polar bear	MODERN SPECIES	99	PYCR2 (ENSUMAG00000015272)	SDE2 (ENSUMAG00000015254)	ENSUMAG00000015236	ACBD3 (ENSUMAG00000015197)	LIN9 (ENSUMAG00000015190)	PARP1 (ENSUMAG00000014555)	ENSUMAG00000014454	PSEN2 (ENSUMAG00000014436)	COQ8A (ENSUMAG00000014369)	CDC42BPA (ENSUMAG00000014320)	AHCTF1 (ENSUMAG00000013411)	ENSUMAG00000013333	SCCPDH (ENSUMAG00000013328)	ENSUMAG00000013325	TFB2M (ENSUMAG00000013324)	ENSUMAG00000013322 ##22	ENSUMAG00000013317	EFCAB2 (ENSUMAG00000013304)	HNRNPU (ENSUMAG00000012322)	ENSUMAG00000012218	DESI2 (ENSUMAG00000012207)	ENSUMAG00000012197	ADSS2 (ENSUMAG00000011932)	C1orf100 (ENSUMAG00000011873)	ZBTB18 (ENSUMAG00000011860)	AKT3 (ENSUMAG00000011832)	SDCCAG8 (ENSUMAG00000011811)	CEP170 (ENSUMAG00000011791)	PLD5 (ENSUMAG00000011776)	ENSUMAG00000011763	BECN2 (ENSUMAG00000011758)
Ursus	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d.b ##22
Polar bear	MODERN SPECIES	96	ABHD3 (ENSUMAG00000019744)	SNRPD1 (ENSUMAG00000019740)	ESCO1 (ENSUMAG00000019729)	GREB1L (ENSUMAG00000019718)	ENSUMAG00000019713	ROCK1 (ENSUMAG00000019708)	USP14 (ENSUMAG00000019700)	THOC1 (ENSUMAG00000019693)	COLEC12 (ENSUMAG00000019688)	ENSUMAG00000019685	CETN1 (ENSUMAG00000019682)	CLUL1 (ENSUMAG00000019680)	TYMS (ENSUMAG00000019677)	ENOSF1 (ENSUMAG00000019674)	YES1 (ENSUMAG00000019673)	ENSUMAG00000019669 ##22	ADCYAP1 (ENSUMAG00000019664)	METTL4 (ENSUMAG00000019651)	NDC80 (ENSUMAG00000019602)	SMCHD1 (ENSUMAG00000019575)	EMILIN2 (ENSUMAG00000019556)	LPIN2 (ENSUMAG00000019544)	MYOM1 (ENSUMAG00000019140)	MYL12A (ENSUMAG00000019097)	MYL12B (ENSUMAG00000019096)	TGIF1 (ENSUMAG00000019091)	DLGAP1 (ENSUMAG00000018976)	AKAIN1 (ENSUMAG00000018955)	ZBTB14 (ENSUMAG00000018942)	EPB41L3 (ENSUMAG00000018925)	L3MBTL4 (ENSUMAG00000018879)
American black bear	MODERN SPECIES	529									USP14 (ENSUAMG00000004776)	THOC1 (ENSUAMG00000002527)	COLEC12 (ENSUAMG00000002446)	CETN1 (ENSUAMG00000002436)	CLUL1 (ENSUAMG00000002429)	TYMS (ENSUAMG00000002421)	ENOSF1 (ENSUAMG00000002413)	ENSUAMG00000002409 ##22	YES1 (ENSUAMG00000002396)
Artiodactyla	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Artiodactyla_a	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Artiodactyla_b	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Cetacea	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Blue whale	MODERN SPECIES	11	RABGGTA (ENSBMSG00010012078)	DHRS1 (ENSBMSG00010012097)	NOP9 (ENSBMSG00010012116)	CIDEB (ENSBMSG00010012136)	LTB4R2 (ENSBMSG00010012150)	ADCY4 (ENSBMSG00010012176)	RIPK3 (ENSBMSG00010012210)	NFATC4 (ENSBMSG00010012238)	NYNRIN (ENSBMSG00010012291)	CBLN3 (ENSBMSG00010012308)	KHNYN (ENSBMSG00010012332)	SDR39U1 (ENSBMSG00010012347)	ENSBMSG00010012361	ENSBMSG00010012369	ENSBMSG00010012407	ENSBMSG00010012434 ##22	ENSBMSG00010012441	GZMH (ENSBMSG00010012451)	ENSBMSG00010012468	GZMB (ENSBMSG00010012482)	STXBP6 (ENSBMSG00010012498)	NOVA1 (ENSBMSG00010012536)	ENSBMSG00010012567	ENSBMSG00010012582	ENSBMSG00010012592	FOXG1 (ENSBMSG00010012602)	PRKD1 (ENSBMSG00010012633)	ENSBMSG00010012692	SCFD1 (ENSBMSG00010012723)	COCH (ENSBMSG00010012783)	STRN3 (ENSBMSG00010012838)
Pecora	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Yarkand deer	MODERN SPECIES	27	ENSCHYG00000006477	ENSCHYG00000006439	ENSCHYG00000006132	ENSCHYG00000005834	ENSCHYG00000005768	ENSCHYG00000005718	NLRP12 (ENSCHYG00000005645)	ENSCHYG00000005604	ENSCHYG00000005488	ZNF331 (ENSCHYG00000005458)	ENSCHYG00000005437	ENSCHYG00000005431	ENSCHYG00000005398	ENSCHYG00000005374	ENSCHYG00000005359	ENSCHYG00000005338 ##22	ENSCHYG00000005316	ENSCHYG00000005299	ENSCHYG00000002335	ENSCHYG00000002319	ENSCHYG00000002307	ENSCHYG00000002300	ENSCHYG00000002283	ENSCHYG00000002272	ENSCHYG00000002215	ENSCHYG00000002202	ENSCHYG00000002183	ENSCHYG00000002174	ENSCHYG00000002152	ENSCHYG00000002135	ENSCHYG00000002122
Percora_a	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Bovidae	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Bovinae	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Bos	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Bos_a	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Wild yak	MODERN SPECIES	332				ERICH4 (ENSBMUG00000023426)	DMAC2 (ENSBMUG00000023419)	B3GNT8 (ENSBMUG00000023403)	BCKDHA (ENSBMUG00000023396)	EXOSC5 (ENSBMUG00000023383)	TMEM91 (ENSBMUG00000023374)	B9D2 (ENSBMUG00000023361)	TGFB1 (ENSBMUG00000023351)	CCDC97 (ENSBMUG00000023344)	HNRNPUL1 (ENSBMUG00000023314)	AXL (ENSBMUG00000023253)	CYP2S1 (ENSBMUG00000023225)	ENSBMUG00000023202 ##22	ENSBMUG00000023188	ENSBMUG00000023159	ENSBMUG00000023124	ENSBMUG00000023013	ENSBMUG00000023006	CYP2F1 (ENSBMUG00000022981)	ENSBMUG00000022967	EGLN2 (ENSBMUG00000022958)	RAB4B (ENSBMUG00000022931)	MIA (ENSBMUG00000022902)	SNRPA (ENSBMUG00000022895)	ACTMAP (ENSBMUG00000022885)	ITPKC (ENSBMUG00000022870)	COQ8B (ENSBMUG00000022856)	NUMBL (ENSBMUG00000022818)
Euarchontoglires	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Primates	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Haplorrhini	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Simiiformes	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Mas night monkey	MODERN SPECIES	1082				ENSANAG00000005998	ENSANAG00000018706	RPA4 (ENSANAG00000029328)	ENSANAG00000010664	DIAPH2 (ENSANAG00000027935)	ENSANAG00000022144	ENSANAG00000031933	PCDH19 (ENSANAG00000036635)	TNMD (ENSANAG00000021840)	TSPAN6 (ENSANAG00000030641)	SRPX2 (ENSANAG00000029401)	SYTL4 (ENSANAG00000029096)	ENSANAG00000026590 ##22	CSTF2 (ENSANAG00000022342)	ENSANAG00000019383	XKRX (ENSANAG00000029464)	NOX1 (ENSANAG00000028753)	ARL13A (ENSANAG00000029887)	TRMT2B (ENSANAG00000020552)	TMEM35A (ENSANAG00000027535)	ENSANAG00000019842	ENSANAG00000031468	CENPI (ENSANAG00000016647)	ENSANAG00000023607	ARMCX5 (ENSANAG00000019843)
Catarrhini	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Hominoidea	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Gibbon	MODERN SPECIES	21	ENSNLEG00000026899	ENSNLEG00000032090	ENSNLEG00000028832	NIPA1 (ENSNLEG00000030666)	NIPA2 (ENSNLEG00000035813)	CYFIP1 (ENSNLEG00000011085)	TUBGCP5 (ENSNLEG00000010987)	ENSNLEG00000026795	ENSNLEG00000031107	ENSNLEG00000036044	ENSNLEG00000027596	MAGEL2 (ENSNLEG00000018795)	ENSNLEG00000028122	ENSNLEG00000001365	SNRPN (ENSNLEG00000001376)	ENSNLEG00000032294 ##22	ENSNLEG00000001404	UBE3A (ENSNLEG00000001407)	ATP10A (ENSNLEG00000001532)	ENSNLEG00000035717	GABRB3 (ENSNLEG00000001628)	GABRA5 (ENSNLEG00000032139)	GABRG3 (ENSNLEG00000010534)	OCA2 (ENSNLEG00000010539)	HERC2 (ENSNLEG00000010563)	APBA2 (ENSNLEG00000012430)	ENTREP2 (ENSNLEG00000012443)	TJP1 (ENSNLEG00000012450)	ENSNLEG00000012458	FAN1 (ENSNLEG00000007533)	ENSNLEG00000030565
Cercopithecidae	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Rhinopithecus	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Black snub-nosed monkey	MODERN SPECIES	56										ENSRBIG00000028430	ENSRBIG00000032347	RCN2 (ENSRBIG00000044023)	PSTPIP1 (ENSRBIG00000040558)	TSPAN3 (ENSRBIG00000037146)	PEAK1 (ENSRBIG00000040242)	ENSRBIG00000022598 ##22	HMG20A (ENSRBIG00000042166)	ENSRBIG00000037371	LINGO1 (ENSRBIG00000041628)
Cercopithecinae	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Cercopithecinae_a	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Cercopithecinae_b	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Cercopithecinae_d	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Sooty mangabey	MODERN SPECIES	283	ENSCATG00000039864	SOWAHD (ENSCATG00000007897)	SEPTIN6 (ENSCATG00000036060)	NKRF (ENSCATG00000031763)	UBE2A (ENSCATG00000013952)	STEEP1 (ENSCATG00000034044)	SLC25A5 (ENSCATG00000030763)	SLC25A43 (ENSCATG00000045150)	PGRMC1 (ENSCATG00000039960)	ENSCATG00000040418	KIAA1210 (ENSCATG00000015100)	CT47C1 (ENSCATG00000038614)	LONRF3 (ENSCATG00000040361)	ZCCHC12 (ENSCATG00000006188)	IL13RA1 (ENSCATG00000034378)	ENSCATG00000040411 ##22	ENSCATG00000009670	DOCK11 (ENSCATG00000038401)	WDR44 (ENSCATG00000044289)	KLHL13 (ENSCATG00000040977)	CT83 (ENSCATG00000034454)	SLC6A14 (ENSCATG00000038946)	AGTR2 (ENSCATG00000020256)	ENSCATG00000045172	PLS3 (ENSCATG00000038506)	LUZP4 (ENSCATG00000012199)	LRCH2 (ENSCATG00000037702)	IL13RA2 (ENSCATG00000037283)	HTR2C (ENSCATG00000031908)	ENSCATG00000038904	ENSCATG00000043275
Euarchontoglires_A	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Glires	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Rodentia	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Rodentia_A	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Hystricomorpha	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Naked mole-rat female	MODERN SPECIES	16	ADSS (ENSHGLG00000007672)	ENSHGLG00000009917	ENSHGLG00000041745	ENSHGLG00000035202	ENSHGLG00000015935	ENSHGLG00000043796	COX20 (ENSHGLG00000015836)	ENSHGLG00000010594	ENSHGLG00000042794	ENSHGLG00000034325	ENSHGLG00000015928	ENSHGLG00000044814	ENSHGLG00000020542	ENSHGLG00000040776	ENSHGLG00000015190	ENSHGLG00000037193 ##22	ENSHGLG00000033222	ENSHGLG00000039138	CNST (ENSHGLG00000013480)	SCCPDH (ENSHGLG00000006856)	ENSHGLG00000034681	ENSHGLG00000018487	ENSHGLG00000010422	ENSHGLG00000033266	ENSHGLG00000021253	ENSHGLG00000004246	ADCK3 (ENSHGLG00000004988)	ENSHGLG00000048833	ENSHGLG00000042450	ENSHGLG00000005756	ENSHGLG00000041747
Rodentia_B	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Myomorpha	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Muroidea	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Muroidea_A	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Murinae	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Rat	MODERN SPECIES	16	ENSRNOG00000069784	Ifrd1 (ENSRNOG00000050997)	Lsmem1 (ENSRNOG00000039110)	Scin (ENSRNOG00000004498)	Arl4a (ENSRNOG00000069300)	LOC120093247 (ENSRNOG00000029594)	RGD1560073 (ENSRNOG00000068503)	Etv1 (ENSRNOG00000006867)	ENSRNOG00000066213	Dgkb (ENSRNOG00000030771)	Agmo (ENSRNOG00000023116)	Meox2 (ENSRNOG00000006588)	Crppa (ENSRNOG00000006199)	ENSRNOG00000064210	Sostdc1 (ENSRNOG00000005770)	RGD1559808 (ENSRNOG00000051710) ##22	Lrrc72 (ENSRNOG00000025049)	Ankmy2 (ENSRNOG00000005623)	Bzw2 (ENSRNOG00000005096)	Tspan13 (ENSRNOG00000005046)	Agr2 (ENSRNOG00000005023)	Agr3 (ENSRNOG00000004994)	ENSRNOG00000067630	Ahr (ENSRNOG00000004342)	Snx13 (ENSRNOG00000004186)	Prps1l1 (ENSRNOG00000032513)	ENSRNOG00000062909	Hdac9 (ENSRNOG00000004158)	Twist1 (ENSRNOG00000011101)	ENSRNOG00000062802	Ferd3l (ENSRNOG00000011091)
Cricetidae	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Cricetinae	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a.d ##22
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	352	Grip1 (ENSCGRG00001016989)	Helb (ENSCGRG00001019650)	Irak3 (ENSCGRG00001021664)	Tmbim4 (ENSCGRG00001017771)	Llph (ENSCGRG00001002067)	Hmga2 (ENSCGRG00001000426)	Msrb3 (ENSCGRG00001023685)	Lemd3 (ENSCGRG00001000700)	Wif1 (ENSCGRG00001017177)	Tbc1d30 (ENSCGRG00001019436)	Gns (ENSCGRG00001005812)	Rassf3 (ENSCGRG00001022140)	Tbk1 (ENSCGRG00001010773)	Xpot (ENSCGRG00001016835)	D930020B18Rik (ENSCGRG00001017356)	ENSCGRG00001001442 ##22	Kics2 (ENSCGRG00001024430)	Srgap1 (ENSCGRG00001020994)	Rxylt1 (ENSCGRG00001006679)	Avpr1a (ENSCGRG00001021326)	Ppm1h (ENSCGRG00001023106)	Mon2 (ENSCGRG00001014349)	Usp15 (ENSCGRG00001000393)	Tafa2 (ENSCGRG00001014019)	ENSCGRG00001021690	Slc16a7 (ENSCGRG00001016918)	Lrig3 (ENSCGRG00001012777)	ENSCGRG00001007637	Atp23 (ENSCGRG00001013234)	Ctdsp2 (ENSCGRG00001005659)	Avil (ENSCGRG00001012627)
Chinese hamster chok1gshd	MODERN SPECIES	3	Commd6 (ENSCGRG00001022721)	Tbc1d4 (ENSCGRG00001004245)	Klf12 (ENSCGRG00001021973)	Klf5 (ENSCGRG00001017865)	Pibf1 (ENSCGRG00001013529)	Dis3 (ENSCGRG00001022496)	Bora (ENSCGRG00001022846)	Mzt1 (ENSCGRG00001000463)	Dach1 (ENSCGRG00001015848)	Klhl1 (ENSCGRG00001015933)	ENSCGRG00001005685	ENSCGRG00001023250	Pcdh9 (ENSCGRG00001013105)	ENSCGRG00001017222	ENSCGRG00001021714	ENSCGRG00001009641 ##22	Pcdh20 (ENSCGRG00001021707)	Tdrd3 (ENSCGRG00001011297)	Diaph3 (ENSCGRG00001019022)	Pcdh17 (ENSCGRG00001009409)	ENSCGRG00001017435	ENSCGRG00001014173	Olfm4 (ENSCGRG00001022304)	Pcdh8 (ENSCGRG00001015602)	Cnmd (ENSCGRG00001001658)	ENSCGRG00001022636	Elf1 (ENSCGRG00001016200)	Wbp4 (ENSCGRG00001002031)	ENSCGRG00001009361	ENSCGRG00001000650	Kbtbd7 (ENSCGRG00001022213)
Golden Hamster	DUPLICATION
Golden Hamster	MODERN SPECIES	685	4930455H04Rik (ENSMAUG00000014234)	Plppr4 (ENSMAUG00000015134)	Plppr5 (ENSMAUG00000016119)	Snx7 (ENSMAUG00000015642)	ENSMAUG00000017740	Dpyd (ENSMAUG00000016874)	Ptbp2 (ENSMAUG00000019011)	Rwdd3 (ENSMAUG00000000095)	ENSMAUG00000000681	ENSMAUG00000000741	Cnn3 (ENSMAUG00000010251)	Slc44a3 (ENSMAUG00000011333)	F3 (ENSMAUG00000009782)	Abcd3 (ENSMAUG00000013960)	Arhgap29 (ENSMAUG00000005936)	ENSMAUG00000016162 ##22	Abca4 (ENSMAUG00000013300)	ENSMAUG00000014976	Dnttip2 (ENSMAUG00000017681)	Bcar3 (ENSMAUG00000017906)	Fnbp1l (ENSMAUG00000000261)	Pde5a (ENSMAUG00000000342)	Fabp2 (ENSMAUG00000005408)	1810037I17Rik (ENSMAUG00000000301)	Usp53 (ENSMAUG00000001112)	Myoz2 (ENSMAUG00000005996)	ENSMAUG00000003052	Sec24d (ENSMAUG00000006147)	Mettl14 (ENSMAUG00000014022)	Prss12 (ENSMAUG00000005077)	Ndst3 (ENSMAUG00000010271)
Golden Hamster	MODERN SPECIES	817								ENSMAUG00000011729	ENSMAUG00000011057	Clec5a (ENSMAUG00000013571)	Or9a4 (ENSMAUG00000015834)	Prss37 (ENSMAUG00000014269)	Tas2r108 (ENSMAUG00000015894)	ENSMAUG00000016883	Wee2 (ENSMAUG00000013105)	ENSMAUG00000013965 ##22	Dennd11 (ENSMAUG00000014079)	Agk (ENSMAUG00000015011)	ENSMAUG00000016360	ENSMAUG00000017929	ENSMAUG00000018327	Mrps33 (ENSMAUG00000014314)	Braf (ENSMAUG00000016066)	Ndufb2 (ENSMAUG00000000340)	Adck2 (ENSMAUG00000000751)	Dennd2a (ENSMAUG00000000468)	ENSMAUG00000001183	Rab19 (ENSMAUG00000001491)	ENSMAUG00000003611	Kdm7a (ENSMAUG00000010299)	Parp12 (ENSMAUG00000005236)
Marsupialia	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a #22
Marsupialia_b	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a #22
Diprotodontia	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a #22
Diprotodontia_a	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a #22
koala	DUPLICATION
koala	MODERN SPECIES	127											HS3ST5 (ENSPCIG00000035773)	HDAC2 (ENSPCIG00000025858)	MARCKS (ENSPCIG00000025859)	ENSPCIG00000025864	ENSPCIG00000016524	ENSPCIG00000003023 #22	ENSPCIG00000017502	LAMA4 (ENSPCIG00000013918)	FAM229B (ENSPCIG00000013913)	TUBE1 (ENSPCIG00000013909)	CCN6 (ENSPCIG00000013904)	ENSPCIG00000035801	FYN (ENSPCIG00000007339)	ENSPCIG00000007341	ENSPCIG00000007348	REV3L (ENSPCIG00000007344)	ENSPCIG00000033261	ENSPCIG00000017740	ENSPCIG00000034152	ENSPCIG00000007350	SLC16A10 (ENSPCIG00000028171)
koala	MODERN SPECIES	12	KMO (ENSPCIG00000000055)	OPN3 (ENSPCIG00000000054)	WDR64 (ENSPCIG00000000053)	EXO1 (ENSPCIG00000000052)	PLD5 (ENSPCIG00000000048)	ENSPCIG00000022932	ENSPCIG00000037006	ENSPCIG00000006946	AKT3 (ENSPCIG00000006957)	ZBTB18 (ENSPCIG00000006967)	ENSPCIG00000017077	ENSPCIG00000017075	ADSS2 (ENSPCIG00000017074)	ENSPCIG00000032232	DESI2 (ENSPCIG00000008632)	ENSPCIG00000035729 #22	COX20 (ENSPCIG00000035475)	HNRNPU (ENSPCIG00000008657)	EFCAB2 (ENSPCIG00000013082)	KIF26B (ENSPCIG00000016690)	ENSPCIG00000003253	ENSPCIG00000003263	ENSPCIG00000003268	CNST (ENSPCIG00000003285)	SCCPDH (ENSPCIG00000003299)	ENSPCIG00000003346	AHCTF1 (ENSPCIG00000003367)	CDC42BPA (ENSPCIG00000006500)	COQ8A (ENSPCIG00000006475)	PSEN2 (ENSPCIG00000006466)	ITPKB (ENSPCIG00000006460)
Sauria	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a #22
Lepidosauria	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a #22
Episquamata	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a #22
Laterata	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a #22
Argentine black and white tegu	DUPLICATION
Argentine black and white tegu	MODERN SPECIES	79	TESK1 (ENSSMRG00000020137)	FAM166B (ENSSMRG00000020138)	RUSC2 (ENSSMRG00000020139)	ENSSMRG00000020140	UNC13B (ENSSMRG00000020141)	ATOSB (ENSSMRG00000020142)	STOML2 (ENSSMRG00000020143)	PIGO (ENSSMRG00000020144)	FANCG (ENSSMRG00000020148)	VCP (ENSSMRG00000020150)	DNAJB5 (ENSSMRG00000020152)	PHF24 (ENSSMRG00000020154)	ENSSMRG00000020161	ENSSMRG00000020164	CNTFR (ENSSMRG00000020167)	ENSSMRG00000020170 #22	GALT (ENSSMRG00000020175)	SIGMAR1 (ENSSMRG00000020177)	ENSSMRG00000020180	DCTN3 (ENSSMRG00000020181)	ENSSMRG00000020183	RPP25L (ENSSMRG00000020185)	DNAI1 (ENSSMRG00000020187)	FAM219A (ENSSMRG00000020216)	C9orf24 (ENSSMRG00000020217)	ENSSMRG00000020219	ENSSMRG00000020220	AQP3 (ENSSMRG00000020223)	NOL6 (ENSSMRG00000020224)	UBE2R2 (ENSSMRG00000020226)	UBAP2 (ENSSMRG00000020227)
Argentine black and white tegu	MODERN SPECIES	5	WAC (ENSSMRG00000014238)	BAMBI (ENSSMRG00000014241)	MAP3K8 (ENSSMRG00000014243)	MTPAP (ENSSMRG00000014244)	JCAD (ENSSMRG00000014245)	SVIL (ENSSMRG00000014248)	ZEB1 (ENSSMRG00000014251)	ARHGAP12 (ENSSMRG00000014260)	KIF5B (ENSSMRG00000014266)	EPC1 (ENSSMRG00000014272)	ITGB1 (ENSSMRG00000014274)	NRP1 (ENSSMRG00000014277)	PARD3 (ENSSMRG00000014284)	CUL2 (ENSSMRG00000014286)	CREM (ENSSMRG00000014288)	ENSSMRG00000014289 #22	CCNY (ENSSMRG00000014290)	GJD4 (ENSSMRG00000014291)	FZD8 (ENSSMRG00000014294)	ENSSMRG00000014296	ENSSMRG00000014298	KLF6 (ENSSMRG00000014302)	PITRM1 (ENSSMRG00000014307)	PFKP (ENSSMRG00000014309)	ENSSMRG00000014312	ADARB2 (ENSSMRG00000014314)	ENSSMRG00000014315	WDR37 (ENSSMRG00000014316)	ENSSMRG00000014317	GTPBP4 (ENSSMRG00000014318)	LARP4B (ENSSMRG00000014320)
Archelosauria	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a #22
Cryptodira	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a #22
Testudinoidea	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a #22
Emydidae	ANCESTRAL SPECIES	49	ENSGT00940000161168 #8	ENSGT00940000156785	ENSGT00940000161052 #10	ENSGT00390000002944 #11	ENSGT00950000183178.a #12	ENSGT00940000155637 #13	ENSGT00390000016940.c.a	ENSGT00940000158593 #14	ENSGT00730000111107 #15	ENSGT00940000157144 #16	ENSGT00950000183188.A.a #17	ENSGT00940000159517 #18	ENSGT00940000160756 #19	ENSGT00390000003749 #20	ENSGT00940000158308 #21	ENSGT00390000002517.a.a #22	ENSGT00940000156107 #23	ENSGT00940000154281 #24	ENSGT00950000182897.A #26	ENSGT00940000156561.b #27	ENSGT01030000234570.d.b.a.a.b ##28	ENSGT01030000234570.d.b.a.a.a.b #29	ENSGT00940000155746 #30	ENSGT00530000063647.B #31	ENSGT00940000161079 #32	ENSGT00940000161155 #33	ENSGT00950000182908.B #34	ENSGT00940000160056 #35	ENSGT00390000006813 #36	ENSGT00940000164642	ENSGT00390000013978.d
painted turtle	MODERN SPECIES	973			SARNP (ENSCPBG00000012618) #11	ORMDL2 (ENSCPBG00000012620) #12	DNAJC14 (ENSCPBG00000012621) #13	ENSCPBG00000012623	MMP19 (ENSCPBG00000012626) #14	PYM1 (ENSCPBG00000012628) #15	DGKA (ENSCPBG00000012632) #16	PMEL (ENSCPBG00000012708) #17	CDK2 (ENSCPBG00000012709) #18	RAB5B (ENSCPBG00000012712) #19	ENSCPBG00000012714	SUOX (ENSCPBG00000012716) #20	IKZF4 (ENSCPBG00000012719) #21	RPS26 (ENSCPBG00000012722) #22	ERBB3 (ENSCPBG00000012759) #23	PA2G4 (ENSCPBG00000012820) #24	ZC3H10 (ENSCPBG00000012828) #26	ESYT1 (ENSCPBG00000012832) #27	ENSCPBG00000012834 ##28	MYL6 (ENSCPBG00000012835) #29	SMARCC2 (ENSCPBG00000012854) #30	RNF41 (ENSCPBG00000013767) #31	NABP2 (ENSCPBG00000013768) #32	ENSCPBG00000013770 #33	ANKRD52 (ENSCPBG00000013771) #34	ENSCPBG00000013773	COQ10A (ENSCPBG00000013774) #35	CS (ENSCPBG00000013780) #36	ENSCPBG00000014023
Three-toed box turtle	MODERN SPECIES	40	TMEM87A (ENSTMTG00000012849)	VPS39 (ENSTMTG00000012892)	ENSTMTG00000012994	ENSTMTG00000013066	ENSTMTG00000013101	ENSTMTG00000013216	ENSTMTG00000013590	ENSTMTG00000013629	ENSTMTG00000013698	EHD4 (ENSTMTG00000013732)	ENSTMTG00000013749	ENSTMTG00000013851	ENSTMTG00000013873	JMJD7 (ENSTMTG00000013881)	MAPKBP1 (ENSTMTG00000013906)	ENSTMTG00000014009 #22	MGA (ENSTMTG00000014025)	TYRO3 (ENSTMTG00000014110)	ENSTMTG00000014151	RPAP1 (ENSTMTG00000014165)	ENSTMTG00000014215	ITPKA (ENSTMTG00000014266)	ENSTMTG00000014331	RTF1 (ENSTMTG00000014364)	NDUFAF1 (ENSTMTG00000014475)	ENSTMTG00000014488	ENSTMTG00000014502	CHP1 (ENSTMTG00000014514)	EXD1 (ENSTMTG00000014536)	INO80 (ENSTMTG00000014560)	CHAC1 (ENSTMTG00000014665)
Anura	ANCESTRAL SPECIES																	ENSGT00390000002517.a.a #22
Leishan spiny toad	MODERN SPECIES		BSG (ENSLLEG00000000622)	ENSLLEG00000000601	HCN2 (ENSLLEG00000000571)	POLRMT (ENSLLEG00000000468)	RNF126 (ENSLLEG00000000397)	FSTL3 (ENSLLEG00000000367)	ENSLLEG00000000198	ENSLLEG00000000119	CNN2 (ENSLLEG00000000103)	TMEM259 (ENSLLEG00000027920)	GRIN3B (ENSLLEG00000027861)	ENSLLEG00000027842	WDR18 (ENSLLEG00000027810)	ENSLLEG00000027799	ENSLLEG00000027782	ENSLLEG00000027769 #22	ENSLLEG00000027703	ENSLLEG00000027678	ENSLLEG00000027619	ENSLLEG00000027606	ENSLLEG00000027599	MED16 (ENSLLEG00000027294)	R3HDM4 (ENSLLEG00000027114)	ENSLLEG00000027074	ENSLLEG00000027035	PLPPR3 (ENSLLEG00000026979)	PTBP1 (ENSLLEG00000025108)	ENSLLEG00000025003	ENSLLEG00000024994	ENSLLEG00000024981	ENSLLEG00000024931