Euarchontoglires_A ANCESTRAL SPECIES ENSGT00940000154386.ob.c.b.b ENSGT00940000158746 ENSGT00940000155117.f.a ENSGT00390000001114 ENSGT00940000162420 ENSGT00390000006200 ENSGT00940000155195 ENSGT00940000157937 ENSGT00940000158520 ENSGT00940000157316 ENSGT00940000161004 ENSGT00940000161034 ENSGT01030000239475 ENSGT00940000156099 ENSGT01030000234606.b ENSGT00390000010743.a #22 ENSGT00940000156236 ENSGT00390000012568 ENSGT00730000111014 ENSGT00530000063751.a ENSGT00940000154614 ENSGT00940000155635 ENSGT00390000001254 ENSGT00530000063646.a ENSGT00940000154499 ENSGT00940000154149.b.a ENSGT00940000159391 ENSGT00390000014594 ENSGT00390000014781 ENSGT01030000234558.C ENSGT00940000156012 Glires ANCESTRAL SPECIES ENSGT00940000154386.ob.c.b.b ENSGT00940000158746 ENSGT00940000155117.f.a ENSGT00390000001114 ENSGT00940000162420 ENSGT00390000006200 ENSGT00940000155195 ENSGT00940000157937 ENSGT00940000158520 ENSGT00940000157316 ENSGT00940000161004 ENSGT00940000161034 ENSGT01030000239475 ENSGT00940000156099 ENSGT01030000234606.b ENSGT00390000010743.a #22 ENSGT00940000156236 ENSGT00390000012568 ENSGT00730000111014 ENSGT00530000063751.a ENSGT00940000154614 ENSGT00940000155635 ENSGT00390000001254 ENSGT00530000063646.a ENSGT00940000154499 ENSGT00940000154149.b.a ENSGT00940000159391 ENSGT00390000014594 ENSGT00390000014781 ENSGT01030000234558.C ENSGT00940000156012 Lagomorpha ANCESTRAL SPECIES 15 ENSGT00940000154386.ob.c.a ENSGT00940000154386.ob.c.b.b ENSGT00940000158746 ENSGT00940000155117.f.a ENSGT00390000001114 ENSGT00940000164211 ENSGT00390000006200 ENSGT00940000155195 ENSGT00940000157937 ENSGT00940000158520 ENSGT00940000157316 ENSGT00940000161004 ENSGT00940000161034 ENSGT00940000156099 ENSGT01030000234606.b ENSGT00390000010743.a #22 ENSGT00940000156236 ENSGT00390000012568 ENSGT00730000111014 ENSGT00530000063751.a ENSGT00940000154614 Pika MODERN SPECIES 6754 PTGS2 (ENSOPRG00000013139) #22 Rabbit MODERN SPECIES 7 ENSOCUG00000024544 ENSOCUG00000036788 CDC73 (ENSOCUG00000016332) B3GALT2 (ENSOCUG00000001596) ENSOCUG00000013249 RO60 (ENSOCUG00000012814) UCHL5 (ENSOCUG00000016766) ENSOCUG00000027066 RGS13 (ENSOCUG00000012867) RGS1 (ENSOCUG00000012873) RGS21 (ENSOCUG00000021904) RGS18 (ENSOCUG00000011612) BRINP3 (ENSOCUG00000011729) PLA2G4A (ENSOCUG00000014644) ENSOCUG00000034566 PTGS2 (ENSOCUG00000016771) #22 PDC (ENSOCUG00000006782) ODR4 (ENSOCUG00000006776) TPR (ENSOCUG00000012261) ENSOCUG00000027187 HMCN1 (ENSOCUG00000013453) Rodentia ANCESTRAL SPECIES ENSGT00940000154386.ob.d ENSGT00940000158746 ENSGT00940000155117.f.a ENSGT00390000001114 ENSGT00940000162420 ENSGT00390000006200 ENSGT00940000155195 ENSGT00940000157937 ENSGT00940000158520 ENSGT00940000157316 ENSGT00940000161004 ENSGT00940000161034 ENSGT01030000239475 ENSGT00940000156099 ENSGT01030000234606.b ENSGT00390000010743.a #22 ENSGT00940000156236 ENSGT00390000012568 ENSGT00730000111014 ENSGT00530000063751.a ENSGT00940000154614 ENSGT00940000155635 ENSGT00390000001254 ENSGT00530000063646.a ENSGT00940000154499 ENSGT00940000154149.b.a ENSGT00940000159391 ENSGT00390000014594 ENSGT00390000014781 ENSGT01030000234558.C ENSGT00940000156012 Rodentia_B ANCESTRAL SPECIES ENSGT00940000154386.ob.c.b.b ENSGT00940000164315.b ENSGT00940000158746 ENSGT00940000155117.f.a ENSGT00390000001114 ENSGT00940000162420 ENSGT00390000006200 ENSGT00940000155195 ENSGT00940000157937 ENSGT00940000158520 ENSGT00940000157316 ENSGT00940000161004 ENSGT00940000161034 ENSGT00940000156099 ENSGT01030000234606.b ENSGT00390000010743.a #22 ENSGT00940000156236 ENSGT00390000012568 ENSGT00730000111014 ENSGT00530000063751.a ENSGT00940000154614 ENSGT00940000155635 ENSGT00390000001254 ENSGT00530000063646.a ENSGT00940000154499 ENSGT00940000154149.b.a ENSGT00940000159391 ENSGT00390000014594 ENSGT00390000014781 ENSGT01030000234558.C ENSGT00940000156012 Myomorpha ANCESTRAL SPECIES 16 ENSGT00940000164315.b ENSGT00940000158746 ENSGT00390000001114 ENSGT00940000155117.f.a ENSGT00940000164211 ENSGT00940000162420 ENSGT00390000006200 ENSGT00940000155195 ENSGT00940000157937 ENSGT00940000158520 ENSGT00940000157316 ENSGT00940000161004 ENSGT00940000161034 ENSGT00940000156099 ENSGT01030000234606.b ENSGT00390000010743.a #22 ENSGT00940000156236 ENSGT00390000012568 ENSGT00730000111014 ENSGT00530000063751.a ENSGT00940000154614 ENSGT00940000155635 ENSGT00390000001254 ENSGT00530000063646.a ENSGT00940000154499 ENSGT00940000154149.b.a ENSGT00940000159391 ENSGT00390000014594 ENSGT00390000014781 ENSGT01030000234558.C ENSGT00940000156012.r Muroidea ANCESTRAL SPECIES 9 ENSGT00940000164315.b ENSGT00940000158746 ENSGT00390000001114 ENSGT00940000155117.f.a ENSGT00940000164211 ENSGT00940000162420 ENSGT00390000006200 ENSGT00940000155195 ENSGT00940000157937 ENSGT00940000158520 ENSGT00940000157316 ENSGT00940000161004 ENSGT00940000161034 ENSGT00940000156099 ENSGT01030000234606.b ENSGT00390000010743.a #22 ENSGT00940000156236 ENSGT00390000012568 ENSGT00730000111014 ENSGT00530000063751.a ENSGT00940000154614 ENSGT00940000155635 ENSGT00390000001254 ENSGT00530000063646.a ENSGT00940000154499 ENSGT00940000154149.b.a ENSGT00940000159391 ENSGT00390000014594 ENSGT00390000014781 ENSGT01030000234558.C ENSGT00940000156012.r Muroidea_A ANCESTRAL SPECIES 12 ENSGT00940000164315.b ENSGT00940000158746 ENSGT00390000001114 ENSGT00940000155117.f.a ENSGT00940000164211 ENSGT00940000162420 ENSGT00390000006200 ENSGT00940000155195 ENSGT00940000157937 ENSGT00940000158520 ENSGT00940000157316 ENSGT00940000161004 ENSGT00940000161034 ENSGT00940000156099 ENSGT01030000234606.b ENSGT00390000010743.a #22 ENSGT00940000156236 ENSGT00390000012568 ENSGT00730000111014 ENSGT00530000063751.a ENSGT00940000154614 ENSGT00940000155635 ENSGT00390000001254 ENSGT00530000063646.a ENSGT00940000154499 ENSGT00940000154149.b.a ENSGT00940000159391 ENSGT00390000014594 ENSGT00390000014781 ENSGT01030000234558.C ENSGT00940000156012.r Cricetidae ANCESTRAL SPECIES 13 ENSGT00940000164315.b.d.a ENSGT00940000158746 ENSGT00390000001114 ENSGT00940000155117.f.a ENSGT00940000164211 ENSGT00940000162420 ENSGT00390000006200 ENSGT00940000155195 ENSGT00940000157937 ENSGT00940000158520 ENSGT00940000157316 ENSGT00940000161004 ENSGT00940000161034 ENSGT00940000156099 ENSGT01030000234606.b ENSGT00390000010743.a #22 ENSGT00940000156236 ENSGT00390000012568 ENSGT00730000111014 ENSGT00530000063751.a ENSGT00940000154614 ENSGT00940000155635 ENSGT00390000001254 ENSGT00530000063646.a ENSGT00940000154499 ENSGT00940000154149.b.a ENSGT00940000159391 ENSGT00390000014594 ENSGT00390000014781 ENSGT01030000234558.C ENSGT00940000156012.r Cricetinae ANCESTRAL SPECIES 4 ENSGT00940000164315.b.d.b ENSGT00940000164315.b.d.a ENSGT00940000158746 ENSGT00940000155117.f.a ENSGT00390000001114 ENSGT00940000162420 ENSGT00390000006200 ENSGT00940000155195 ENSGT00940000157937 ENSGT00940000158520 ENSGT00940000157316 ENSGT00940000161004 ENSGT00940000161034 ENSGT00940000156099 ENSGT01030000234606.b ENSGT00390000010743.a #22 ENSGT00940000156236 ENSGT00390000012568 ENSGT00730000111014 ENSGT00530000063751.a ENSGT00940000154614 ENSGT00940000155635 ENSGT00390000001254 ENSGT00530000063646.a ENSGT00940000154499 ENSGT00940000154149.b.a ENSGT00940000159391 ENSGT00390000014594 ENSGT00390000014781 ENSGT01030000234558.C ENSGT00940000156012.r Chinese hamster chok1gshd MODERN SPECIES 2 Cdc73 (ENSCGRG00001023831) ENSCGRG00001024711 Ro60 (ENSCGRG00001016925) Uchl5 (ENSCGRG00001016538) Rgs2 (ENSCGRG00001015999) Rgs13 (ENSCGRG00001011756) Rgs1 (ENSCGRG00001011664) ENSCGRG00001004114 Rgs21 (ENSCGRG00001010657) Rgs18 (ENSCGRG00001010249) ENSCGRG00001020617 Brinp3 (ENSCGRG00001019247) ENSCGRG00001017155 ENSCGRG00001016441 Pla2g4a (ENSCGRG00001021132) Ptgs2 (ENSCGRG00001016942) #22 Pdc (ENSCGRG00001018609) Odr4 (ENSCGRG00001012334) Tpr (ENSCGRG00001022166) Prg4 (ENSCGRG00001017987) Hmcn1 (ENSCGRG00001015387) Ivns1abp (ENSCGRG00001010161) Swt1 (ENSCGRG00001022955) Trmt1l (ENSCGRG00001019297) Rnf2 (ENSCGRG00001018674) Niban1 (ENSCGRG00001024143) Edem3 (ENSCGRG00001007570) 1700025G04Rik (ENSCGRG00001022600) ENSCGRG00001019325 Colgalt2 (ENSCGRG00001023470) Rgl1 (ENSCGRG00001012758) Golden Hamster MODERN SPECIES 656 ENSMAUG00000021099 ENSMAUG00000018171 ENSMAUG00000021694 Kcnt2 (ENSMAUG00000022275) Cdc73 (ENSMAUG00000021759) B3galt2 (ENSMAUG00000004971) ENSMAUG00000020175 Ro60 (ENSMAUG00000008125) Uchl5 (ENSMAUG00000020894) Rgs2 (ENSMAUG00000020846) Rgs13 (ENSMAUG00000016710) Rgs1 (ENSMAUG00000016047) Rgs21 (ENSMAUG00000009318) Brinp3 (ENSMAUG00000010030) Pla2g4a (ENSMAUG00000011857) Ptgs2 (ENSMAUG00000018762) #22 Pdc (ENSMAUG00000014913) Odr4 (ENSMAUG00000009236) Tpr (ENSMAUG00000021293) Prg4 (ENSMAUG00000010457) ENSMAUG00000016046 Cricetidae_B ANCESTRAL SPECIES 8 ENSGT00940000164315.b.d.a ENSGT00940000158746 ENSGT00390000001114 ENSGT00940000155117.f.a ENSGT00940000164211 ENSGT00940000162420 ENSGT00390000006200 ENSGT00940000155195 ENSGT00940000157937 ENSGT00940000158520 ENSGT00940000157316 ENSGT00940000161004 ENSGT00940000161034 ENSGT00940000156099 ENSGT01030000234606.b ENSGT00390000010743.a #22 ENSGT00940000156236 ENSGT00390000012568 ENSGT00730000111014 ENSGT00530000063751.a ENSGT00940000154614 ENSGT00940000155635 ENSGT00390000001254 ENSGT00530000063646.a ENSGT00940000154499 ENSGT00940000154149.b.a ENSGT00940000159391 ENSGT00390000014594 ENSGT00390000014781 ENSGT01030000234558.C ENSGT00940000156012.r Prairie vole MODERN SPECIES 14 ENSMOCG00000014693 Ro60 (ENSMOCG00000021175) Uchl5 (ENSMOCG00000003391) ENSMOCG00000006184 Rgs2 (ENSMOCG00000009727) Rgs13 (ENSMOCG00000015045) Rgs1 (ENSMOCG00000001788) Rgs21 (ENSMOCG00000006485) Rgs18 (ENSMOCG00000022524) ENSMOCG00000012077 ENSMOCG00000021158 Brinp3 (ENSMOCG00000000906) ENSMOCG00000010417 ENSMOCG00000015221 Pla2g4a (ENSMOCG00000011318) Ptgs2 (ENSMOCG00000014822) #22 ENSMOCG00000019983 Flnb (ENSMOCG00000012697) Gm45521 (ENSMOCG00000005472) Dnase1l3 (ENSMOCG00000006651) Abhd6 (ENSMOCG00000013420) ENSMOCG00000015810 Rpp14 (ENSMOCG00000012609) Pxk (ENSMOCG00000016503) Pdhb (ENSMOCG00000021251) Kctd6 (ENSMOCG00000016836) Acox2 (ENSMOCG00000020368) Fam107a (ENSMOCG00000022210) Fam3d (ENSMOCG00000000282) ENSMOCG00000014517 Cfap20dc (ENSMOCG00000013078) Northern American deer mouse MODERN SPECIES 2 ENSPEMG00000030533 ENSPEMG00000013578 Cdc73 (ENSPEMG00000017241) B3galt2 (ENSPEMG00000026087) ENSPEMG00000018784 Ro60 (ENSPEMG00000001419) Uchl5 (ENSPEMG00000002439) Rgs2 (ENSPEMG00000008350) Rgs13 (ENSPEMG00000011301) Rgs1 (ENSPEMG00000012482) Rgs21 (ENSPEMG00000012866) Rgs18 (ENSPEMG00000023775) ENSPEMG00000025536 Brinp3 (ENSPEMG00000011927) Pla2g4a (ENSPEMG00000013171) Ptgs2 (ENSPEMG00000010420) #22 Pdc (ENSPEMG00000009431) Odr4 (ENSPEMG00000003414) Tpr (ENSPEMG00000020078) ENSPEMG00000000081 ENSPEMG00000030031 Hmcn1 (ENSPEMG00000028632) ENSPEMG00000029537 Ivns1abp (ENSPEMG00000012016) Swt1 (ENSPEMG00000008208) Trmt1l (ENSPEMG00000000031) ENSPEMG00000026908 Rnf2 (ENSPEMG00000020255) Niban1 (ENSPEMG00000027997) Edem3 (ENSPEMG00000020193) 1700025G04Rik (ENSPEMG00000014343) Murinae ANCESTRAL SPECIES 11 ENSGT00940000164315.b ENSGT00940000158746 ENSGT00390000001114 ENSGT00940000155117.f.a ENSGT00940000164211 ENSGT00940000162420 ENSGT00390000006200 ENSGT00940000155195 ENSGT00940000157937 ENSGT00940000158520 ENSGT00940000157316 ENSGT00940000161004 ENSGT00940000161034 ENSGT00940000156099 ENSGT01030000234606.b ENSGT00390000010743.a #22 ENSGT00940000156236 ENSGT00390000012568 ENSGT00730000111014 ENSGT00530000063751.a ENSGT00940000154614 ENSGT00940000155635 ENSGT00390000001254 ENSGT00530000063646.a ENSGT00940000154499 ENSGT00940000154149.b.a ENSGT00940000159391 ENSGT00390000014594 ENSGT00390000014781 ENSGT01030000234558.C ENSGT00940000156012.r Mus ANCESTRAL SPECIES 5 ENSGT00940000163634 ENSGT00940000164315.b ENSGT00940000158746 ENSGT00390000001114 ENSGT00940000155117.f.a ENSGT00940000164211 ENSGT00390000006200 ENSGT00940000155195 ENSGT00940000157937 ENSGT00940000158520 ENSGT00940000157316 ENSGT00940000161004 ENSGT00940000161034 ENSGT00940000156099 ENSGT01030000234606.b ENSGT00390000010743.a #22 ENSGT00940000156236 ENSGT00390000012568 ENSGT00730000111014 ENSGT00530000063751.a ENSGT00940000154614 ENSGT00940000155635 ENSGT00390000001254 ENSGT00530000063646.a ENSGT00940000154499 ENSGT00940000154149.b.a ENSGT00940000159391 ENSGT00390000014594 ENSGT00390000014781 ENSGT01030000234558.C ENSGT00940000156012.r Mus_A DUPLICATION Mus_A ANCESTRAL SPECIES ENSGT00390000010743.a.g #22 Mus_B ANCESTRAL SPECIES ENSGT00390000010743.a.g #22 Mus_C ANCESTRAL SPECIES ENSGT00390000010743.a.g #22 Steppe mouse DUPLICATION Steppe mouse MODERN SPECIES 882 ENSMSIG00000007028 #22 Steppe mouse MODERN SPECIES 652 ENSMSIG00000009549 #22 Ryukyu mouse MODERN SPECIES Cfhr1 (MGP_CAROLIEiJ_G0014670) MGP_CAROLIEiJ_G0014671 Kcnt2 (MGP_CAROLIEiJ_G0014672) Cdc73 (MGP_CAROLIEiJ_G0014673) B3galt2 (MGP_CAROLIEiJ_G0014674) MGP_CAROLIEiJ_G0014675 Ro60 (MGP_CAROLIEiJ_G0014676) Uchl5 (MGP_CAROLIEiJ_G0014677) Rgs2 (MGP_CAROLIEiJ_G0014678) Rgs13 (MGP_CAROLIEiJ_G0014679) Rgs1 (MGP_CAROLIEiJ_G0014680) Rgs21 (MGP_CAROLIEiJ_G0014681) Rgs18 (MGP_CAROLIEiJ_G0014682) Brinp3 (MGP_CAROLIEiJ_G0014683) Pla2g4a (MGP_CAROLIEiJ_G0014684) MGP_CAROLIEiJ_G0014685 #22 Pdc (MGP_CAROLIEiJ_G0014686) Odr4 (MGP_CAROLIEiJ_G0014687) Tpr (MGP_CAROLIEiJ_G0014688) MGP_CAROLIEiJ_G0014689 Hmcn1 (MGP_CAROLIEiJ_G0014690) Ivns1abp (MGP_CAROLIEiJ_G0014691) Swt1 (MGP_CAROLIEiJ_G0014692) Trmt1l (MGP_CAROLIEiJ_G0014693) Rnf2 (MGP_CAROLIEiJ_G0014694) Niban1 (MGP_CAROLIEiJ_G0014695) Edem3 (MGP_CAROLIEiJ_G0014696) 1700025G04Rik (MGP_CAROLIEiJ_G0014697) Tsen15 (MGP_CAROLIEiJ_G0014698) Colgalt2 (MGP_CAROLIEiJ_G0014699) Rgl1 (MGP_CAROLIEiJ_G0014700) Mus_A ANCESTRAL SPECIES 5 ENSGT00940000163634 ENSGT00940000164315.b ENSGT00940000158746 ENSGT00390000001114 ENSGT00940000155117.f.a ENSGT00940000164211 ENSGT00390000006200 ENSGT00940000155195 ENSGT00940000157937 ENSGT00940000158520 ENSGT00940000157316 ENSGT00940000161004 ENSGT00940000161034 ENSGT00940000156099 ENSGT01030000234606.b ENSGT00390000010743.a.h #22 ENSGT00940000156236 ENSGT00390000012568 ENSGT00730000111014 ENSGT00530000063751.a ENSGT00940000154614 ENSGT00940000155635 ENSGT00390000001254 ENSGT00530000063646.a ENSGT00940000154499 ENSGT00940000154149.b.a ENSGT00940000159391 ENSGT00390000014594 ENSGT00390000014781 ENSGT01030000234558.C ENSGT00940000156012.r Mus_B ANCESTRAL SPECIES 7 ENSGT00940000164315.b.e.a ENSGT00940000164315.b.f ENSGT00940000158746 ENSGT00390000001114 ENSGT00940000155117.f.a ENSGT00940000164211 ENSGT00390000006200 ENSGT00940000155195 ENSGT00940000157937 ENSGT00940000158520 ENSGT00940000157316 ENSGT00940000161004 ENSGT00940000161034 ENSGT00940000156099 ENSGT01030000234606.b ENSGT00390000010743.a.h #22 ENSGT00940000156236 ENSGT00390000012568 ENSGT00730000111014 ENSGT00530000063751.a ENSGT00940000154614 ENSGT00940000155635 ENSGT00390000001254 ENSGT00530000063646.a ENSGT00940000154499 ENSGT00940000154149.b.a ENSGT00940000159391 ENSGT00390000014594 ENSGT00390000014781 ENSGT01030000234558.C ENSGT00940000156012.r Mouse MODERN SPECIES Cfhr2 (ENSMUSG00000033898) Cfh (ENSMUSG00000026365) Kcnt2 (ENSMUSG00000052726) Cdc73 (ENSMUSG00000026361) B3galt2 (ENSMUSG00000033849) Glrx2 (ENSMUSG00000018196) Ro60 (ENSMUSG00000018199) Uchl5 (ENSMUSG00000018189) Rgs2 (ENSMUSG00000026360) Rgs13 (ENSMUSG00000051079) Rgs1 (ENSMUSG00000026358) Rgs21 (ENSMUSG00000098509) Rgs18 (ENSMUSG00000026357) Brinp3 (ENSMUSG00000035131) Pla2g4a (ENSMUSG00000056220) Ptgs2 (ENSMUSG00000032487) #22 Pdc (ENSMUSG00000006007) Odr4 (ENSMUSG00000006010) Tpr (ENSMUSG00000006005) Prg4 (ENSMUSG00000006014) Hmcn1 (ENSMUSG00000066842) Gm47985 (ENSMUSG00000114212) Gm8947 (ENSMUSG00000114943) Gm47995 (ENSMUSG00000114694) 3110040M04Rik (ENSMUSG00000114582) Gm47996 (ENSMUSG00000114591) Ivns1abp (ENSMUSG00000023150) Swt1 (ENSMUSG00000052748) Trmt1l (ENSMUSG00000053286) Rnf2 (ENSMUSG00000026484) Niban1 (ENSMUSG00000026483) Mus_C ANCESTRAL SPECIES 1 ENSGT00940000154967.b ENSGT00940000163634 ENSGT00940000164315.b.e.a ENSGT00940000155117.f.a ENSGT00390000001114 ENSGT00940000164211 ENSGT00390000006200 ENSGT00940000155195 ENSGT00940000157937 ENSGT00940000158520 ENSGT00940000157316 ENSGT00940000161004 ENSGT00940000161034 ENSGT00940000156099 ENSGT01030000234606.b ENSGT00390000010743.a.h #22 ENSGT00940000156236 ENSGT00390000012568 ENSGT00730000111014 ENSGT00530000063751.a ENSGT00940000154614 ENSGT00940000155635 ENSGT00390000001254 ENSGT00530000063646.a ENSGT00940000154499 ENSGT00940000154149.b.a ENSGT00940000159391 ENSGT00390000014594 ENSGT00390000014781 ENSGT01030000234558.C ENSGT00940000156012.r spretus MODERN SPECIES Cfhr1 (MGP_SPRETEiJ_G0015477) Cfh (MGP_SPRETEiJ_G0015478) Kcnt2 (MGP_SPRETEiJ_G0015479) Cdc73 (MGP_SPRETEiJ_G0015480) B3galt2 (MGP_SPRETEiJ_G0015481) MGP_SPRETEiJ_G0015482 Ro60 (MGP_SPRETEiJ_G0015483) Uchl5 (MGP_SPRETEiJ_G0015484) Rgs2 (MGP_SPRETEiJ_G0015485) Rgs13 (MGP_SPRETEiJ_G0015486) Rgs1 (MGP_SPRETEiJ_G0015487) Rgs21 (MGP_SPRETEiJ_G0015488) Rgs18 (MGP_SPRETEiJ_G0015489) Brinp3 (MGP_SPRETEiJ_G0015490) Pla2g4a (MGP_SPRETEiJ_G0015491) Ptgs2 (MGP_SPRETEiJ_G0015492) #22 Odr4 (MGP_SPRETEiJ_G0015493) Pdc (MGP_SPRETEiJ_G0015494) Tpr (MGP_SPRETEiJ_G0015495) MGP_SPRETEiJ_G0015496 MGP_SPRETEiJ_G0015497 Ivns1abp (MGP_SPRETEiJ_G0015498) Swt1 (MGP_SPRETEiJ_G0015499) Trmt1l (MGP_SPRETEiJ_G0015500) Rnf2 (MGP_SPRETEiJ_G0015501) Niban1 (MGP_SPRETEiJ_G0015502) Edem3 (MGP_SPRETEiJ_G0015503) 1700025G04Rik (MGP_SPRETEiJ_G0015504) Tsen15 (MGP_SPRETEiJ_G0015505) Colgalt2 (MGP_SPRETEiJ_G0015506) Rgl1 (MGP_SPRETEiJ_G0015507) Steppe mouse MODERN SPECIES 2502 Ptgs2 (ENSMSIG00000029584) #22 ENSMSIG00000029595 Shrew mouse MODERN SPECIES 18 MGP_PahariEiJ_G0027906 MGP_PahariEiJ_G0027907 Kcnt2 (MGP_PahariEiJ_G0027908) Cdc73 (MGP_PahariEiJ_G0027909) B3galt2 (MGP_PahariEiJ_G0027910) Glrx2 (MGP_PahariEiJ_G0027911) Ro60 (MGP_PahariEiJ_G0027912) MGP_PahariEiJ_G0027913 Rgs2 (MGP_PahariEiJ_G0027914) Rgs13 (MGP_PahariEiJ_G0027915) Rgs1 (MGP_PahariEiJ_G0027916) Rgs21 (MGP_PahariEiJ_G0027917) Rgs18 (MGP_PahariEiJ_G0027918) Brinp3 (MGP_PahariEiJ_G0027919) Pla2g4a (MGP_PahariEiJ_G0027920) Ptgs2 (MGP_PahariEiJ_G0027921) #22 Pdc (MGP_PahariEiJ_G0027922) MGP_PahariEiJ_G0027923 Tpr (MGP_PahariEiJ_G0027924) Prg4 (MGP_PahariEiJ_G0027925) Hmcn1 (MGP_PahariEiJ_G0027926) Ivns1abp (MGP_PahariEiJ_G0027927) Swt1 (MGP_PahariEiJ_G0027928) Trmt1l (MGP_PahariEiJ_G0027929) Rnf2 (MGP_PahariEiJ_G0027930) Niban1 (MGP_PahariEiJ_G0027931) Edem3 (MGP_PahariEiJ_G0027932) 1700025G04Rik (MGP_PahariEiJ_G0027933) Tsen15 (MGP_PahariEiJ_G0027934) Colgalt2 (MGP_PahariEiJ_G0027935) Rgl1 (MGP_PahariEiJ_G0027936) Rat MODERN SPECIES 4 B3galt2 (ENSRNOG00000003251) Glrx2 (ENSRNOG00000003385) Ro60 (ENSRNOG00000003434) Uchl5 (ENSRNOG00000003545) ENSRNOG00000070924 Rgs2 (ENSRNOG00000003687) Rgs13 (ENSRNOG00000003888) Rgs1 (ENSRNOG00000003895) Rgs21 (ENSRNOG00000056369) ENSRNOG00000065694 Rgs18 (ENSRNOG00000003959) Brinp3 (ENSRNOG00000002811) Gapdh-ps17 (ENSRNOG00000022174) Pla2g4a (ENSRNOG00000002657) ENSRNOG00000066166 Ptgs2 (ENSRNOG00000002525) #22 Pdc (ENSRNOG00000002517) Odr4 (ENSRNOG00000002473) Tpr (ENSRNOG00000002394) Prg4 (ENSRNOG00000002385) Hmcn1 (ENSRNOG00000028627) Ivns1abp (ENSRNOG00000002618) Swt1 (ENSRNOG00000032258) Trmt1l (ENSRNOG00000002580) Rnf2 (ENSRNOG00000002454) ENSRNOG00000064602 Niban1 (ENSRNOG00000002403) Edem3 (ENSRNOG00000028358) AABR07021384.1 (ENSRNOG00000029859) RGD1309104 (ENSRNOG00000028236) Tsen15 (ENSRNOG00000002352) Upper Galilee mountains blind mole rat MODERN SPECIES 1864 Rgs21 (ENSNGAG00000000947) Rgs18 (ENSNGAG00000021070) Brinp3 (ENSNGAG00000004539) Pla2g4a (ENSNGAG00000019637) Ptgs2 (ENSNGAG00000003295) #22 Pdc (ENSNGAG00000012617) Odr4 (ENSNGAG00000011992) Tpr (ENSNGAG00000016102) Prg4 (ENSNGAG00000015884) Hmcn1 (ENSNGAG00000009143) ENSNGAG00000010667 Ivns1abp (ENSNGAG00000005926) Swt1 (ENSNGAG00000021080) Trmt1l (ENSNGAG00000011685) Rnf2 (ENSNGAG00000019146) ENSNGAG00000000157 Edem3 (ENSNGAG00000009721) 1700025G04Rik (ENSNGAG00000000165) Tsen15 (ENSNGAG00000008121) Colgalt2 (ENSNGAG00000010837) Lesser Egyptian jerboa MODERN SPECIES 71 B3galt2 (ENSJJAG00000010288) Cdc73 (ENSJJAG00000018799) Ro60 (ENSJJAG00000019489) Uchl5 (ENSJJAG00000018557) ENSJJAG00000003146 Rgs2 (ENSJJAG00000018402) Rgs1 (ENSJJAG00000022429) Rgs21 (ENSJJAG00000010689) ENSJJAG00000011654 Brinp3 (ENSJJAG00000014785) ENSJJAG00000014532 ENSJJAG00000016686 ENSJJAG00000003042 ENSJJAG00000013538 Pla2g4a (ENSJJAG00000023490) Ptgs2 (ENSJJAG00000009663) #22 Pdc (ENSJJAG00000017261) Odr4 (ENSJJAG00000006358) ENSJJAG00000018435 ENSJJAG00000018090 Hmcn1 (ENSJJAG00000011952) Kangaroo rat MODERN SPECIES 376 Rgs7 (ENSDORG00000004523) Fh1 (ENSDORG00000003444) Kmo (ENSDORG00000009160) Opn3 (ENSDORG00000009162) Chml (ENSDORG00000025256) Wdr64 (ENSDORG00000009164) Exo1 (ENSDORG00000015067) Pld5 (ENSDORG00000009684) Rgs2 (ENSDORG00000005665) Rgs13 (ENSDORG00000028550) Rgs1 (ENSDORG00000007964) Rgs21 (ENSDORG00000012559) Rgs18 (ENSDORG00000016438) Brinp3 (ENSDORG00000003459) Pla2g4a (ENSDORG00000003012) Ptgs2 (ENSDORG00000002998) #22 Pdc (ENSDORG00000002197) Odr4 (ENSDORG00000004797) ENSDORG00000004792 ENSDORG00000028414 ENSDORG00000004789 Hmcn1 (ENSDORG00000000927) Ivns1abp (ENSDORG00000010533) Swt1 (ENSDORG00000010531) Trmt1l (ENSDORG00000003298) Rnf2 (ENSDORG00000003231) ENSDORG00000013136 Edem3 (ENSDORG00000015760) 1700025G04Rik (ENSDORG00000028610) ENSDORG00000000004 Uhmk1 (ENSDORG00000011233) Rodentia_A ANCESTRAL SPECIES ENSGT00940000154386.ob.c.b.b ENSGT00940000158746 ENSGT00940000155117.f.a ENSGT00390000001114 ENSGT00940000162420 ENSGT00390000006200 ENSGT00940000155195 ENSGT00940000157937 ENSGT00940000158520 ENSGT00940000157316 ENSGT00940000161004 ENSGT00940000161034 ENSGT01030000239475 ENSGT00940000156099 ENSGT01030000234606.b ENSGT00390000010743.a #22 ENSGT00940000156236 ENSGT00390000012568 ENSGT00730000111014 ENSGT00530000063751.a ENSGT00940000154614 ENSGT00940000155635 ENSGT00390000001254 ENSGT00530000063646.a ENSGT00940000154499 ENSGT00940000154149.b.a ENSGT00940000159391 ENSGT00390000014594 ENSGT00390000014781 ENSGT01030000234558.C ENSGT00940000156012 Hystricomorpha ANCESTRAL SPECIES 29 ENSGT00940000154967.b ENSGT00940000154386.ob.c.b.b ENSGT00940000158746 ENSGT00940000155117.f.a ENSGT00390000001114 ENSGT00940000162420 ENSGT00390000006200 ENSGT00940000155195 ENSGT00940000157937 ENSGT00940000158520 ENSGT00940000157316 ENSGT00940000161004 ENSGT00940000161034 ENSGT00940000156099 ENSGT01030000234606.b ENSGT00390000010743.a #22 ENSGT00940000156236 ENSGT00390000012568 ENSGT00730000111014 ENSGT00530000063751.a ENSGT00940000154614 ENSGT00940000155635 ENSGT00390000001254 ENSGT00530000063646.a ENSGT00940000154499 ENSGT00940000154149.b.a ENSGT00390000013235.b ENSGT00940000159391 ENSGT00390000014594 ENSGT00390000014781 ENSGT01030000234558.C Naked mole-rat female MODERN SPECIES 16 ENSHGLG00000038288 RGS2 (ENSHGLG00000042820) ENSHGLG00000050174 RGS13 (ENSHGLG00000038752) RGS1 (ENSHGLG00000007565) ENSHGLG00000047163 RGS21 (ENSHGLG00000011391) ENSHGLG00000047585 ENSHGLG00000003383 ENSHGLG00000046954 ENSHGLG00000004527 ENSHGLG00000036059 ENSHGLG00000008205 ENSHGLG00000040785 ENSHGLG00000010528 PTGS2 (ENSHGLG00000005555) #22 PDC (ENSHGLG00000007016) ENSHGLG00000013464 TPR (ENSHGLG00000018823) PRG4 (ENSHGLG00000037640) HMCN1 (ENSHGLG00000019222) ENSHGLG00000038341 IVNS1ABP (ENSHGLG00000003305) SWT1 (ENSHGLG00000006542) ENSHGLG00000003135 ENSHGLG00000004191 ENSHGLG00000021138 ENSHGLG00000013124 ENSHGLG00000040450 ENSHGLG00000036708 ENSHGLG00000007310 Hystricomorpha_a ANCESTRAL SPECIES 13 ENSGT00940000154967.b ENSGT00940000154386.ob.c.b.b ENSGT00940000158746 ENSGT00940000155117.f.a ENSGT00390000001114 ENSGT00940000162420 ENSGT00390000006200 ENSGT00940000155195 ENSGT00940000157937 ENSGT00940000158520 ENSGT00940000157316 ENSGT00940000161004 ENSGT00940000161034 ENSGT00940000156099 ENSGT01030000234606.b ENSGT00390000010743.a #22 ENSGT00940000156236 ENSGT00390000012568 ENSGT00730000111014 ENSGT00530000063751.a ENSGT00940000154614 ENSGT00940000155635 ENSGT00390000001254 ENSGT00530000063646.a ENSGT00940000154499 ENSGT00940000154149.b.a ENSGT00390000013235.b ENSGT00940000159391 ENSGT00390000014594 ENSGT00390000014781 ENSGT01030000234558.C Hystricomorpha_b ANCESTRAL SPECIES 4 ENSGT00940000154967.b ENSGT00940000154386.ob.c.b.b ENSGT00940000158746 ENSGT00940000155117.f.a ENSGT00390000001114 ENSGT00940000162420 ENSGT00390000006200 ENSGT00940000155195 ENSGT00940000157937 ENSGT00940000158520 ENSGT00940000157316 ENSGT00940000161004 ENSGT00940000161034 ENSGT00940000156099 ENSGT01030000234606.b ENSGT00390000010743.a #22 ENSGT00940000156236 ENSGT00390000012568 ENSGT00730000111014 ENSGT00530000063751.a ENSGT00940000154614 ENSGT00940000155635 ENSGT00390000001254 ENSGT00530000063646.a ENSGT00940000154499 ENSGT00940000154149.b.a ENSGT00390000013235.b ENSGT00940000159391 ENSGT00390000014594 ENSGT00390000014781 ENSGT01030000234558.C Degu MODERN SPECIES 229 BRINP3 (ENSODEG00000000619) ENSODEG00000000640 PLA2G4A (ENSODEG00000000676) PTGS2 (ENSODEG00000000729) #22 PDC (ENSODEG00000000764) ENSODEG00000000804 TPR (ENSODEG00000000889) ENSODEG00000000957 HMCN1 (ENSODEG00000000838) Long-tailed chinchilla MODERN SPECIES 113 KCNT2 (ENSCLAG00000010650) B3GALT2 (ENSCLAG00000010521) CDC73 (ENSCLAG00000011107) GLRX2 (ENSCLAG00000010009) RO60 (ENSCLAG00000016391) ENSCLAG00000014784 RGS2 (ENSCLAG00000013377) ENSCLAG00000011055 RGS13 (ENSCLAG00000010047) RGS1 (ENSCLAG00000009691) ENSCLAG00000009249 RGS21 (ENSCLAG00000011554) RGS18 (ENSCLAG00000010916) BRINP3 (ENSCLAG00000009361) PLA2G4A (ENSCLAG00000013091) PTGS2 (ENSCLAG00000010309) #22 PDC (ENSCLAG00000009883) ODR4 (ENSCLAG00000011867) TPR (ENSCLAG00000014758) ENSCLAG00000009204 HMCN1 (ENSCLAG00000012763) IVNS1ABP (ENSCLAG00000010322) SWT1 (ENSCLAG00000013959) ENSCLAG00000010801 ENSCLAG00000015137 ENSCLAG00000015421 ENSCLAG00000012039 EDEM3 (ENSCLAG00000016578) C1orf21 (ENSCLAG00000013268) ENSCLAG00000010526 TSEN15 (ENSCLAG00000016648) Guinea pig MODERN SPECIES 12 ENSCPOG00000005727 KCNT2 (ENSCPOG00000002541) ENSCPOG00000002759 CDC73 (ENSCPOG00000004335) B3GALT2 (ENSCPOG00000040513) GLRX2 (ENSCPOG00000031671) RO60 (ENSCPOG00000000669) UCHL5 (ENSCPOG00000000667) RGS2 (ENSCPOG00000034795) RGS13 (ENSCPOG00000031215) RGS1 (ENSCPOG00000014656) RGS21 (ENSCPOG00000019596) RGS18 (ENSCPOG00000006173) BRINP3 (ENSCPOG00000020273) PLA2G4A (ENSCPOG00000003809) PTGS2 (ENSCPOG00000001983) #22 PDC (ENSCPOG00000000039) ODR4 (ENSCPOG00000013397) TPR (ENSCPOG00000019790) ENSCPOG00000022044 HMCN1 (ENSCPOG00000007630) IVNS1ABP (ENSCPOG00000014260) SWT1 (ENSCPOG00000014251) TRMT1L (ENSCPOG00000001567) RNF2 (ENSCPOG00000001564) ENSCPOG00000038789 SMIM18 (ENSCPOG00000032073) SLC9C1 (ENSCPOG00000009185) ENSCPOG00000031146 GSR (ENSCPOG00000005290) UBXN8 (ENSCPOG00000034274) Sciuridae ANCESTRAL SPECIES ENSGT00940000163274.b ENSGT00940000158746 ENSGT00940000155117.f.a ENSGT00390000001114 ENSGT00940000164211 ENSGT00940000162420 ENSGT00390000006200 ENSGT00940000155195 ENSGT00940000157937 ENSGT00940000158520 ENSGT00940000157316 ENSGT00940000161004 ENSGT00940000161034 ENSGT00940000156099 ENSGT01030000234606.b ENSGT00390000010743.a #22 ENSGT00940000156236 ENSGT00390000012568 ENSGT00730000111014 ENSGT00530000063751.a ENSGT00940000154614 ENSGT00940000155635 ENSGT00390000001254 ENSGT00530000063646.a ENSGT00940000154499 ENSGT00940000154149.b.a ENSGT00940000159391 ENSGT00390000014594 ENSGT00390000014781 ENSGT01030000234558.C ENSGT00940000156012 Marmotini ANCESTRAL SPECIES 34 ENSGT00940000154386.ob.d ENSGT00940000158746 ENSGT00390000011401.y.b ENSGT00940000155117.f.a ENSGT00390000001114 ENSGT00940000164211 ENSGT00390000006200 ENSGT00940000155195 ENSGT00940000157937 ENSGT00940000158520 ENSGT00940000157316 ENSGT00940000161004 ENSGT00940000161034 ENSGT00940000156099 ENSGT01030000234606.b ENSGT00390000010743.a #22 ENSGT00940000156236 ENSGT00390000012568 ENSGT00730000111014 ENSGT00530000063751.a ENSGT00940000154614 ENSGT00940000155635 ENSGT00390000001254 ENSGT00530000063646.a ENSGT00940000154499 ENSGT00940000154149.b.a ENSGT00940000159391 ENSGT00390000014594 ENSGT00390000014781 ENSGT01030000234558.C ENSGT00940000156012 Marmotini_b DUPLICATION Marmotini_b ANCESTRAL SPECIES 28 ENSGT01030000234606.b ENSGT00390000010743.a.i #22 ENSGT00940000156236 ENSGT00390000012568.d ENSGT00730000111014 ENSGT00530000063751.a ENSGT00940000154614 ENSGT00940000155635 ENSGT00390000001254 ENSGT00530000063646.a ENSGT00940000154499 ENSGT00940000154149.b.a ENSGT00940000159391 ENSGT00390000014594 ENSGT00390000014781 ENSGT01030000234558.C ENSGT00940000156012 Arctic ground squirrel MODERN SPECIES 110 PLA2G4A (ENSUPAG00010003109) PTGS2 (ENSUPAG00010003184) #22 PDC (ENSUPAG00010003196) ENSUPAG00010003203 TPR (ENSUPAG00010003463) ENSUPAG00010003588 HMCN1 (ENSUPAG00010003623) IVNS1ABP (ENSUPAG00010003977) SWT1 (ENSUPAG00010004019) TRMT1L (ENSUPAG00010004037) ENSUPAG00010004072 RNF2 (ENSUPAG00010004080) NIBAN1 (ENSUPAG00010004096) EDEM3 (ENSUPAG00010004991) C1orf21 (ENSUPAG00010005116) ENSUPAG00010005122 COLGALT2 (ENSUPAG00010005128) Squirrel MODERN SPECIES 81 ENSSTOG00000024007 BRINP3 (ENSSTOG00000013227) ENSSTOG00000031049 ENSSTOG00000031151 PLA2G4A (ENSSTOG00000014608) ENSSTOG00000009613 #22 PDC (ENSSTOG00000023754) ENSSTOG00000023665 TPR (ENSSTOG00000013941) ENSSTOG00000023458 HMCN1 (ENSSTOG00000010385) IVNS1ABP (ENSSTOG00000010371) SWT1 (ENSSTOG00000010356) TRMT1L (ENSSTOG00000010332) ENSSTOG00000032913 ENSSTOG00000006625 NIBAN1 (ENSSTOG00000019894) EDEM3 (ENSSTOG00000012848) C1orf21 (ENSSTOG00000031734) TSEN15 (ENSSTOG00000013230) COLGALT2 (ENSSTOG00000013220) Marmotini_b ANCESTRAL SPECIES ENSGT00390000010743.a.j #22 Squirrel MODERN SPECIES 399 ENSSTOG00000029360 #22 Alpin marmot MODERN SPECIES 29 KCNT2 (ENSMMMG00000012824) ENSMMMG00000013032 ENSMMMG00000013056 CDC73 (ENSMMMG00000013120) B3GALT2 (ENSMMMG00000013148) ENSMMMG00000013150 RO60 (ENSMMMG00000013165) UCHL5 (ENSMMMG00000013172) RGS2 (ENSMMMG00000013213) RGS13 (ENSMMMG00000013219) RGS1 (ENSMMMG00000013237) RGS21 (ENSMMMG00000013249) RGS18 (ENSMMMG00000013257) BRINP3 (ENSMMMG00000013271) PLA2G4A (ENSMMMG00000013290) PTGS2 (ENSMMMG00000013357) #22 PDC (ENSMMMG00000013377) ODR4 (ENSMMMG00000013389) TPR (ENSMMMG00000013565) ENSMMMG00000013682 HMCN1 (ENSMMMG00000013721) IVNS1ABP (ENSMMMG00000014075) SWT1 (ENSMMMG00000014125) TRMT1L (ENSMMMG00000014658) ENSMMMG00000014684 RNF2 (ENSMMMG00000014689) NIBAN1 (ENSMMMG00000014717) EDEM3 (ENSMMMG00000014730) C1orf21 (ENSMMMG00000014843) ENSMMMG00000014854 TSEN15 (ENSMMMG00000014867) Eurasian red squirrel MODERN SPECIES 3 CDC73 (ENSSVLG00005007217) B3GALT2 (ENSSVLG00005007271) GLRX2 (ENSSVLG00005007287) RO60 (ENSSVLG00005007319) UCHL5 (ENSSVLG00005007361) RGS2 (ENSSVLG00005007450) RGS13 (ENSSVLG00005007484) RGS1 (ENSSVLG00005007504) RGS21 (ENSSVLG00005007590) RGS18 (ENSSVLG00005007624) ENSSVLG00005007660 ENSSVLG00005007669 BRINP3 (ENSSVLG00005007687) ENSSVLG00005007749 PLA2G4A (ENSSVLG00005007796) PTGS2 (ENSSVLG00005007914) #22 PDC (ENSSVLG00005007988) ODR4 (ENSSVLG00005008039) TPR (ENSSVLG00005008133) ENSSVLG00005008193 HMCN1 (ENSSVLG00005008337) ENSSVLG00005008876 ENSSVLG00005008901 IVNS1ABP (ENSSVLG00005008919) SWT1 (ENSSVLG00005008974) TRMT1L (ENSSVLG00005009015) ENSSVLG00005009097 NIBAN1 (ENSSVLG00005009193) EDEM3 (ENSSVLG00005009257) C1orf21 (ENSSVLG00005009302) ENSSVLG00005009343 Tree shrew MODERN SPECIES 8533 PTGS2 (ENSTBEG00000004275) #22