Vertebrata	ANCESTRAL SPECIES																	ENSGT00390000013151.a.b #22
Gnathostomata	ANCESTRAL SPECIES	93	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000166052	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22
Euteleostomi	ANCESTRAL SPECIES	2	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00940000164650 #9	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000166052	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000163428.b.a	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000165642	ENSGT00390000014900.b.b.a	ENSGT00390000006412	ENSGT00940000154018.b
Sarcopterygii	ANCESTRAL SPECIES		ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00940000164650 #9	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT00940000166052	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000163428.b.a	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00390000008749.f	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000165642	ENSGT00390000014900.b.b.a	ENSGT00390000006412
Tetrapoda	ANCESTRAL SPECIES	7	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00940000164650 #9	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000163428.b.a	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000165642	ENSGT00390000014900.b.b.a	ENSGT00390000006412
Amniota	ANCESTRAL SPECIES	7	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00940000164650 #9	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00940000176107	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000165642
Mammalia	ANCESTRAL SPECIES	4	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00940000164650 #9	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00940000176107	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000165642
Theria	ANCESTRAL SPECIES		ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00940000164650 #9	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00940000176107	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b
Eutheria	ANCESTRAL SPECIES	1	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00940000164650 #9	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a
Boreoeutheria	ANCESTRAL SPECIES	13	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00940000164650 #9	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00910000147712	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a
Euarchontoglires	ANCESTRAL SPECIES	13	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00940000164650 #9	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00910000147712	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a
Euarchontoglires_A	ANCESTRAL SPECIES	23	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00940000164650 #9	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a	ENSGT00910000147441
Glires	ANCESTRAL SPECIES	24	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00940000164650 #9	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a	ENSGT00910000147441
Rodentia	ANCESTRAL SPECIES	12	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00940000164650 #9	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00940000164009 #37	ENSGT00390000014900.b.b.a
Rodentia_A	ANCESTRAL SPECIES	12	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00940000164650 #9	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163281	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a
Hystricomorpha	ANCESTRAL SPECIES	14	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00940000164650 #9	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182803.B.d.a.i.a #29	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000164009 #37	ENSGT00390000014900.b.b.a	ENSGT00390000006412
Naked mole-rat female	MODERN SPECIES	5	ENSHGLG00000016313 #7	ENSHGLG00000016355 #8	ENSHGLG00000045090 #9	TOMM7 (ENSHGLG00000006840) #10	ENSHGLG00000007816 #11	ENSHGLG00000020842 #12	ENSHGLG00000020692 #13	RAPGEF5 (ENSHGLG00000013551) #14	CDCA7L (ENSHGLG00000005237) #15	ENSHGLG00000043520 #16	DNAH11 (ENSHGLG00000014062) #17	SP4 (ENSHGLG00000014842) #18	SP8 (ENSHGLG00000041939) #19	ENSHGLG00000007430 #20	ITGB8 (ENSHGLG00000009109) #21	MACC1 (ENSHGLG00000005625) #22	ENSHGLG00000040956 #23	TMEM196 (ENSHGLG00000035074) #24	POLR1F (ENSHGLG00000010976) #25	FERD3L (ENSHGLG00000036051) #26	ENSHGLG00000033404 #27	HDAC9 (ENSHGLG00000019023) #28	PRPS1L1 (ENSHGLG00000021217) #29	SNX13 (ENSHGLG00000018267) #30	ENSHGLG00000035349 #31	AHR (ENSHGLG00000006373) #32	TSPAN13 (ENSHGLG00000010631) #33	AGR2 (ENSHGLG00000042591) #34	BZW2 (ENSHGLG00000011038) #35	ANKMY2 (ENSHGLG00000037184) #36	ENSHGLG00000009473 #37
Hystricomorpha_a	ANCESTRAL SPECIES	41	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000166044	ENSGT00940000160307 #28	ENSGT00950000182803.B.d.a.i.a #29	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a
Hystricomorpha_b	ANCESTRAL SPECIES	39	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000166044	ENSGT00950000182803.B.d.a.i.a #29	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b
Long-tailed chinchilla	MODERN SPECIES	117	IGF2BP3 (ENSCLAG00000009835)	MALSU1 (ENSCLAG00000008469)	GPNMB (ENSCLAG00000004706)	NUP42 (ENSCLAG00000007547)	KLHL7 (ENSCLAG00000007077)	HYCC1 (ENSCLAG00000008734) #8	TOMM7 (ENSCLAG00000009880) #10	ENSCLAG00000009385	RAPGEF5 (ENSCLAG00000009347) #14	CDCA7L (ENSCLAG00000007779) #15	DNAH11 (ENSCLAG00000007590) #17	SP4 (ENSCLAG00000013285) #18	SP8 (ENSCLAG00000013238) #19	ABCB5 (ENSCLAG00000012805) #20	ITGB8 (ENSCLAG00000006980) #21	MACC1 (ENSCLAG00000005944) #22	TMEM196 (ENSCLAG00000013947) #24	POLR1F (ENSCLAG00000012696) #25	FERD3L (ENSCLAG00000017792) #26	HDAC9 (ENSCLAG00000007911) #28	SNX13 (ENSCLAG00000005253) #30	AHR (ENSCLAG00000005612) #32	AGR2 (ENSCLAG00000005464) #34	TSPAN13 (ENSCLAG00000012606) #33	BZW2 (ENSCLAG00000011809) #35	ANKMY2 (ENSCLAG00000010313) #36	ENSCLAG00000010495 #37	SOSTDC1 (ENSCLAG00000009096)	CRPPA (ENSCLAG00000008000)	MEOX2 (ENSCLAG00000007831)	DGKB (ENSCLAG00000011522)
Degu	MODERN SPECIES	56	CCDC126 (ENSODEG00000009592)	ENSODEG00000009301	TRA2A (ENSODEG00000008335)	ENSODEG00000011195	MALSU1 (ENSODEG00000008210)	GPNMB (ENSODEG00000007447)	KLHL7 (ENSODEG00000007276)	HYCC1 (ENSODEG00000008398) #8	RAPGEF5 (ENSODEG00000007375) #14	CDCA7L (ENSODEG00000006644) #15	DNAH11 (ENSODEG00000010213) #17	SP4 (ENSODEG00000007953) #18	SP8 (ENSODEG00000007393) #19	ABCB5 (ENSODEG00000009297) #20	ITGB8 (ENSODEG00000006123) #21	MACC1 (ENSODEG00000006372) #22	ENSODEG00000006740	POLR1F (ENSODEG00000007222) #25	FERD3L (ENSODEG00000019445) #26	TWIST1 (ENSODEG00000008450) #27	ENSODEG00000007765	PRPS1L1 (ENSODEG00000019429) #29	ENSODEG00000007366	SNX13 (ENSODEG00000007084) #30	ENSODEG00000019583	AHR (ENSODEG00000006823) #32	ENSODEG00000008143	AGR2 (ENSODEG00000006586) #34	ENSODEG00000007541 #33	BZW2 (ENSODEG00000007505) #35	ANKMY2 (ENSODEG00000008716) #36
Guinea pig	MODERN SPECIES	31								RAPGEF5 (ENSCPOG00000003046) #14	CDCA7L (ENSCPOG00000003655) #15	DNAH11 (ENSCPOG00000003632) #17	SP4 (ENSCPOG00000015154) #18	ENSCPOG00000007612	SP8 (ENSCPOG00000026910) #19	ABCB5 (ENSCPOG00000002896) #20	ITGB8 (ENSCPOG00000009110) #21	MACC1 (ENSCPOG00000003007) #22	TMEM196 (ENSCPOG00000013556) #24	POLR1F (ENSCPOG00000031651) #25	HDAC9 (ENSCPOG00000005468) #28	PRPS1L1 (ENSCPOG00000008036) #29	SNX13 (ENSCPOG00000009570) #30	AHR (ENSCPOG00000005481) #32	AGR2 (ENSCPOG00000000018) #34	TSPAN13 (ENSCPOG00000034690) #33	BZW2 (ENSCPOG00000011515) #35	ANKMY2 (ENSCPOG00000011512) #36	ENSCPOG00000011510 #37	SOSTDC1 (ENSCPOG00000034288)	ENSCPOG00000000910	CRPPA (ENSCPOG00000023248)	MEOX2 (ENSCPOG00000026227)
Sciuridae	ANCESTRAL SPECIES	7	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00940000164650 #9	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a	ENSGT00910000147441
Marmotini	ANCESTRAL SPECIES	84									ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a	ENSGT00910000147441
Marmotini_b	ANCESTRAL SPECIES	125									ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182803.B.d.a.i.a #29	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a
Arctic ground squirrel	MODERN SPECIES	13									RAPGEF5 (ENSUPAG00010013100) #14	CDCA7L (ENSUPAG00010013062) #15	DNAH11 (ENSUPAG00010012960) #17	SP4 (ENSUPAG00010012934) #18	SP8 (ENSUPAG00010012923) #19	ABCB5 (ENSUPAG00010012875) #20	ITGB8 (ENSUPAG00010012852) #21	MACC1 (ENSUPAG00010012815) #22	ENSUPAG00010012807	POLR1F (ENSUPAG00010012802) #25	FERD3L (ENSUPAG00010012798) #26	TWIST1 (ENSUPAG00010012792) #27	HDAC9 (ENSUPAG00010012420) #28	PRPS1L1 (ENSUPAG00010012410) #29	SNX13 (ENSUPAG00010012364) #30	AHR (ENSUPAG00010012350) #32	AGR3 (ENSUPAG00010012339) ##34	AGR2 (ENSUPAG00010012328) #34	TSPAN13 (ENSUPAG00010012320) #33	BZW2 (ENSUPAG00010012281) #35	ANKMY2 (ENSUPAG00010012270) #36	ENSUPAG00010012260 #37	SOSTDC1 (ENSUPAG00010012255)
Squirrel	MODERN SPECIES	146									RAPGEF5 (ENSSTOG00000026745) #14	CDCA7L (ENSSTOG00000010398) #15	DNAH11 (ENSSTOG00000010333) #17	SP4 (ENSSTOG00000010326) #18	SP8 (ENSSTOG00000028058) #19	ABCB5 (ENSSTOG00000027737) #20	ITGB8 (ENSSTOG00000016396) #21	MACC1 (ENSSTOG00000015506) #22	ENSSTOG00000031600	ENSSTOG00000032072	TMEM196 (ENSSTOG00000027635) #24	POLR1F (ENSSTOG00000022702) #25	FERD3L (ENSSTOG00000025739) #26	TWIST1 (ENSSTOG00000032264) #27	HDAC9 (ENSSTOG00000001518) #28	SNX13 (ENSSTOG00000001983) #30	AHR (ENSSTOG00000003086) #32	AGR3 (ENSSTOG00000028440) ##34	AGR2 (ENSSTOG00000008843) #34	TSPAN13 (ENSSTOG00000008833) #33	BZW2 (ENSSTOG00000002506) #35	ANKMY2 (ENSSTOG00000002497) #36	LRRC72 (ENSSTOG00000027999)
Alpin marmot	MODERN SPECIES	51									RAPGEF5 (ENSMMMG00000015646) #14	CDCA7L (ENSMMMG00000015620) #15	DNAH11 (ENSMMMG00000015540) #17	SP4 (ENSMMMG00000015532) #18	SP8 (ENSMMMG00000015521) #19	ENSMMMG00000015513 #20	ITGB8 (ENSMMMG00000015498) #21	MACC1 (ENSMMMG00000015478) #22	ENSMMMG00000015455	POLR1F (ENSMMMG00000015448) #25	FERD3L (ENSMMMG00000015442) #26	TWIST1 (ENSMMMG00000015432) #27	HDAC9 (ENSMMMG00000015175) #28	PRPS1L1 (ENSMMMG00000015155) #29	SNX13 (ENSMMMG00000015118) #30	AHR (ENSMMMG00000015102) #32	AGR3 (ENSMMMG00000015096) ##34	AGR2 (ENSMMMG00000015076) #34	TSPAN13 (ENSMMMG00000015067) #33	BZW2 (ENSMMMG00000015053) #35	ANKMY2 (ENSMMMG00000015031) #36	ENSMMMG00000015026	ENSMMMG00000015021
Eurasian red squirrel	MODERN SPECIES	17	NUP42 (ENSSVLG00005019028)	ENSSVLG00005018885	ENSSVLG00005018849	HYCC1 (ENSSVLG00005018797) #8	ENSSVLG00005018594 #9	TOMM7 (ENSSVLG00005018533) #10	ENSSVLG00005018453 #11	RAPGEF5 (ENSSVLG00005017502) #14	CDCA7L (ENSSVLG00005017354) #15	ENSSVLG00005017283	DNAH11 (ENSSVLG00005015034) #17	SP4 (ENSSVLG00005014734) #18	SP8 (ENSSVLG00005014678) #19	ABCB5 (ENSSVLG00005014277) #20	ITGB8 (ENSSVLG00005013971) #21	MACC1 (ENSSVLG00005013888) #22	ENSSVLG00005013765	TMEM196 (ENSSVLG00005013673) #24	POLR1F (ENSSVLG00005013559) #25	ENSSVLG00005013439	FERD3L (ENSSVLG00005013395) #26	TWIST1 (ENSSVLG00005013248) #27	ENSSVLG00005013183	HDAC9 (ENSSVLG00005012221) #28	PRPS1L1 (ENSSVLG00005012063) #29	ENSSVLG00005011929 #30	ENSSVLG00005011888	ENSSVLG00005011843	AHR (ENSSVLG00005011696) #32	AGR3 (ENSSVLG00005011538) ##34	AGR2 (ENSSVLG00005011419) #34
Rodentia_B	ANCESTRAL SPECIES	9	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000164009 #37	ENSGT00390000014900.b.b.a	ENSGT00390000006412
Myomorpha	ANCESTRAL SPECIES	8	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00940000154486.a.a.b ##32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000164009 #37	ENSGT00390000014900.b.b.a
Muroidea	ANCESTRAL SPECIES	8	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00940000154486.a.a.b ##32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000164009 #37	ENSGT00390000014900.b.b.a
Muroidea_A	ANCESTRAL SPECIES	15	ENSGT01030000234536.b.b.b	ENSGT00950000183013.e.a.c.a.b.b.h.b.a.a.b	ENSGT00940000154411.`b.i.f.jc.a	ENSGT00940000158089	ENSGT00390000013743	ENSGT00940000156086	ENSGT00490000043432	ENSGT00940000154095.b.a	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163281
Cricetidae	ANCESTRAL SPECIES	17	ENSGT01050000244871.a.a.c.b.a.a.a.s	ENSGT01030000234536.b.b.b.m.b	ENSGT00940000154411.`b.i.f.jc.a	ENSGT00940000158089	ENSGT00390000013743	ENSGT00940000156086	ENSGT00490000043432	ENSGT00940000154095.b.a	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163281
Cricetinae	ANCESTRAL SPECIES	62			ENSGT00940000154411.`b.i.f.jc.a	ENSGT00940000158089	ENSGT00390000013743	ENSGT00940000156086	ENSGT00490000043432	ENSGT00940000154095.b.a	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163281
Chinese hamster chok1gshd	MODERN SPECIES	251	Serpina11 (ENSCGRG00001017752)	ENSCGRG00001016854	ENSCGRG00001013015	Serpina6 (ENSCGRG00001011122)	Serpina10 (ENSCGRG00001010214)	Ppp4r4 (ENSCGRG00001011779)	ENSCGRG00001008114	ENSCGRG00001022623	Rapgef5 (ENSCGRG00001019381) #14	Cdca7l (ENSCGRG00001014444) #15	Dnah11 (ENSCGRG00001020590) #17	Sp4 (ENSCGRG00001021046) #18	Sp8 (ENSCGRG00001016188) #19	Abcb5 (ENSCGRG00001017932) #20	Itgb8 (ENSCGRG00001010627) #21	Macc1 (ENSCGRG00001006694) #22	Tmem196 (ENSCGRG00001024227)
Golden Hamster	MODERN SPECIES	786			ENSMAUG00000006032	Vipr2 (ENSMAUG00000006692)	Dync2i1 (ENSMAUG00000007405)	Esyt2 (ENSMAUG00000009011)	Ncapg2 (ENSMAUG00000009370)	ENSMAUG00000009615 #14	Cdca7l (ENSMAUG00000010583) #15	Dnah11 (ENSMAUG00000010352) #17	Sp4 (ENSMAUG00000016400) #18	Sp8 (ENSMAUG00000016898) #19	Abcb5 (ENSMAUG00000013511) #20	ENSMAUG00000018272	Itgb8 (ENSMAUG00000000108) #21	Macc1 (ENSMAUG00000014905) #22	Tmem196 (ENSMAUG00000015322)
Cricetidae_B	ANCESTRAL SPECIES	18	ENSGT00940000166360	ENSGT00940000161491.d	ENSGT00940000153165.a.a.c.a	ENSGT00940000158089	ENSGT00390000013743	ENSGT00940000156086	ENSGT00490000043432	ENSGT00940000154095.b.a	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163281
Northern American deer mouse	MODERN SPECIES	5	Zfp386 (ENSPEMG00000024076)	Vipr2 (ENSPEMG00000023142)	Dync2i1 (ENSPEMG00000023457)	Esyt2 (ENSPEMG00000023634)	Ncapg2 (ENSPEMG00000022912)	Ptprn2 (ENSPEMG00000021727)	ENSPEMG00000025190	Rapgef5 (ENSPEMG00000021786) #14	Cdca7l (ENSPEMG00000014266) #15	Dnah11 (ENSPEMG00000022658) #17	Sp4 (ENSPEMG00000021781) #18	Sp8 (ENSPEMG00000022432) #19	Abcb5 (ENSPEMG00000022832) #20	ENSPEMG00000025194	Itgb8 (ENSPEMG00000021722) #21	Macc1 (ENSPEMG00000021443) #22	ENSPEMG00000024099	Tmem196 (ENSPEMG00000026386)
Prairie vole	MODERN SPECIES		ENSMOCG00000016119	Vipr2 (ENSMOCG00000018122)	Dync2i1 (ENSMOCG00000017481)	Esyt2 (ENSMOCG00000000676)	Ncapg2 (ENSMOCG00000022899)	Ptprn2 (ENSMOCG00000015064)	ENSMOCG00000001797	Rapgef5 (ENSMOCG00000008682) #14	Cdca7l (ENSMOCG00000017529) #15	Dnah11 (ENSMOCG00000015979) #17	Sp4 (ENSMOCG00000016482) #18	ENSMOCG00000022665	Sp8 (ENSMOCG00000004492) #19	ENSMOCG00000005454	Itgb8 (ENSMOCG00000005666) #21	Macc1 (ENSMOCG00000010286) #22	Tmem196 (ENSMOCG00000014000)	Pnn (ENSMOCG00000004573)	ENSMOCG00000003083	Gemin2 (ENSMOCG00000023031)	Sec23a (ENSMOCG00000004697)	ENSMOCG00000015761	Clec14a (ENSMOCG00000001508)	Sstr1 (ENSMOCG00000018730)	ENSMOCG00000008283	ENSMOCG00000013226	Foxa1 (ENSMOCG00000012361)	Mipol1 (ENSMOCG00000016950)	Slc25a21 (ENSMOCG00000013167)	Pax9 (ENSMOCG00000008657)	Nkx2-9 (ENSMOCG00000017035)
Murinae	ANCESTRAL SPECIES	8	ENSGT00950000183013.e.a.c.a.b.b.h.b.a.b.b.b.b.b	ENSGT01030000234536.b.b.b.o.b	ENSGT00940000154411.`b.i.f.jc.a	ENSGT00940000158089	ENSGT00390000013743	ENSGT00940000156086	ENSGT00490000043432	ENSGT00940000154095.b.a	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163281
Mus	ANCESTRAL SPECIES	10	ENSGT00950000183013.e.a.c.a.b.b.h.b.a.a.b.b	ENSGT00950000183013.e.a.c.a.b.b.h.b.a.b.b.b.b.b.a	ENSGT00940000153165.a.a.c.a	ENSGT00940000158089	ENSGT00390000013743	ENSGT00940000156086	ENSGT00490000043432	ENSGT00940000154095.b.a	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163281
Mus_A	ANCESTRAL SPECIES	17	ENSGT00950000183013.e.a.c.a.b.b.h.b.a.b.b.b.b.b.b	ENSGT01030000234536.b.b.b.o.b	ENSGT00940000154411.`b.i.f.jc.a	ENSGT00940000158089	ENSGT00390000013743	ENSGT00940000156086	ENSGT00490000043432	ENSGT00940000154095.b.a	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163281
Mus_B	ANCESTRAL SPECIES	17	ENSGT00950000183013.e.a.c.a.b.b.h.b.a.b.b.b.b.a.b.a.b.a	ENSGT00950000183013.e.a.c.a.b.b.h.b.a.a.b.b.d.b.a.a	ENSGT00940000153165.a.a.c.a.g	ENSGT00940000158089	ENSGT00390000013743	ENSGT00940000156086	ENSGT00490000043432	ENSGT00940000154095.b.a	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163281
Mus_C	ANCESTRAL SPECIES	11	ENSGT00950000183013.e.a.c.a.b.b.h.b.a.b.b.b.b.a.b.a.b.a	ENSGT00950000183013.e.a.c.a.b.b.h.b.a.a.b.b.d.b.a.a	ENSGT00940000153165.a.a.c.a.g	ENSGT00940000158089	ENSGT00390000013743	ENSGT00940000156086	ENSGT00490000043432	ENSGT00940000154095.b.a	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163281
spretus	MODERN SPECIES	3	MGP_SPRETEiJ_G0019027	MGP_SPRETEiJ_G0000071	Zfp386 (MGP_SPRETEiJ_G0019028)	Vipr2 (MGP_SPRETEiJ_G0019029)	Dync2i1 (MGP_SPRETEiJ_G0019030)	Esyt2 (MGP_SPRETEiJ_G0019031)	Ncapg2 (MGP_SPRETEiJ_G0019032)	Ptprn2 (MGP_SPRETEiJ_G0019033)	Rapgef5 (MGP_SPRETEiJ_G0019034) #14	Cdca7l (MGP_SPRETEiJ_G0019035) #15	Dnah11 (MGP_SPRETEiJ_G0019036) #17	Sp4 (MGP_SPRETEiJ_G0019037) #18	Sp8 (MGP_SPRETEiJ_G0019038) #19	Abcb5 (MGP_SPRETEiJ_G0019039) #20	Itgb8 (MGP_SPRETEiJ_G0019040) #21	Macc1 (MGP_SPRETEiJ_G0019041) #22	Tmem196 (MGP_SPRETEiJ_G0019042)
Steppe mouse	MODERN SPECIES	3319	Stk31 (ENSMSIG00000018180)	Fam221a (ENSMSIG00000018134)	Ccdc126 (ENSMSIG00000018128)	Esyt2 (ENSMSIG00000017925)	ENSMSIG00000017915	Ncapg2 (ENSMSIG00000017853)	Ptprn2 (ENSMSIG00000017766)	ENSMSIG00000017759	Rapgef5 (ENSMSIG00000017670) #14	Cdca7l (ENSMSIG00000017635) #15	Dnah11 (ENSMSIG00000017415) #17	Sp4 (ENSMSIG00000017320) #18	Sp8 (ENSMSIG00000017284) #19	Abcb5 (ENSMSIG00000017217) #20	Itgb8 (ENSMSIG00000017155) #21	Macc1 (ENSMSIG00000017123) #22
Mouse	MODERN SPECIES	3	Ighv1-84 (ENSMUSG00000094940)	Ighv1-85 (ENSMUSG00000096150)	Zfp386 (ENSMUSG00000042063)	Vipr2 (ENSMUSG00000011171)	Dync2i1 (ENSMUSG00000042050)	Esyt2 (ENSMUSG00000021171)	Ncapg2 (ENSMUSG00000042029)	Ptprn2 (ENSMUSG00000056553)	Rapgef5 (ENSMUSG00000041992) #14	Cdca7l (ENSMUSG00000021175) #15	Dnah11 (ENSMUSG00000018581) #17	Sp4 (ENSMUSG00000025323) #18	Sp8 (ENSMUSG00000048562) #19	Abcb5 (ENSMUSG00000072791) #20	Itgb8 (ENSMUSG00000025321) #21	Macc1 (ENSMUSG00000041886) #22	Tmem196 (ENSMUSG00000048004)
Ryukyu mouse	MODERN SPECIES	3	Ighv1-47 (MGP_CAROLIEiJ_G0000064)	Ighv8-4 (MGP_CAROLIEiJ_G0000065)	Zfp386 (MGP_CAROLIEiJ_G0018176)	Vipr2 (MGP_CAROLIEiJ_G0018177)	Dync2i1 (MGP_CAROLIEiJ_G0018178)	Esyt2 (MGP_CAROLIEiJ_G0018179)	Ncapg2 (MGP_CAROLIEiJ_G0018180)	Ptprn2 (MGP_CAROLIEiJ_G0018181)	Rapgef5 (MGP_CAROLIEiJ_G0018182) #14	Cdca7l (MGP_CAROLIEiJ_G0018183) #15	Dnah11 (MGP_CAROLIEiJ_G0018184) #17	Sp4 (MGP_CAROLIEiJ_G0018185) #18	Sp8 (MGP_CAROLIEiJ_G0018186) #19	Abcb5 (MGP_CAROLIEiJ_G0018187) #20	Itgb8 (MGP_CAROLIEiJ_G0018188) #21	Macc1 (MGP_CAROLIEiJ_G0018189) #22	Tmem196 (MGP_CAROLIEiJ_G0018190)
Shrew mouse	MODERN SPECIES	20	Ighv1-47 (MGP_PahariEiJ_G0000052)	Ighv8-4 (MGP_PahariEiJ_G0000053)	Zfp386 (MGP_PahariEiJ_G0029936)	Vipr2 (MGP_PahariEiJ_G0029937)	Dync2i1 (MGP_PahariEiJ_G0029938)	Esyt2 (MGP_PahariEiJ_G0029939)	Ncapg2 (MGP_PahariEiJ_G0029940)	Ptprn2 (MGP_PahariEiJ_G0029941)	Rapgef5 (MGP_PahariEiJ_G0029942) #14	Cdca7l (MGP_PahariEiJ_G0029943) #15	Dnah11 (MGP_PahariEiJ_G0029944) #17	Sp4 (MGP_PahariEiJ_G0029945) #18	Sp8 (MGP_PahariEiJ_G0029946) #19	Abcb5 (MGP_PahariEiJ_G0029947) #20	Itgb8 (MGP_PahariEiJ_G0029948) #21	Macc1 (MGP_PahariEiJ_G0029949) #22	Tmem196 (MGP_PahariEiJ_G0029950)
Rat	MODERN SPECIES	16	ENSRNOG00000064569	Zfp386 (ENSRNOG00000004268)	Vipr2 (ENSRNOG00000004317)	Dync2i1 (ENSRNOG00000004520)	Esyt2 (ENSRNOG00000032391)	Ncapg2 (ENSRNOG00000004968)	Ptprn2 (ENSRNOG00000005003)	Rapgef5 (ENSRNOG00000005271) #14	Cdca7l (ENSRNOG00000005410) #15	Dnah11 (ENSRNOG00000005451) #17	Sp4 (ENSRNOG00000005472) #18	RGD1562420 (ENSRNOG00000005826)	Sp8 (ENSRNOG00000068174) #19	Abcb5 (ENSRNOG00000006398) #20	Itgb8 (ENSRNOG00000006569) #21	Macc1 (ENSRNOG00000037436) #22	Tmem196 (ENSRNOG00000037435)	ENSRNOG00000071153
Upper Galilee mountains blind mole rat	MODERN SPECIES	413															Itgb8 (ENSNGAG00000008122) #21	Macc1 (ENSNGAG00000022757) #22	Tmem196 (ENSNGAG00000021516)	Polr1f (ENSNGAG00000022455) #25	Ferd3l (ENSNGAG00000012141) #26	Hdac9 (ENSNGAG00000023208) #28	Snx13 (ENSNGAG00000017668) #30	ENSNGAG00000009505 #32
Lesser Egyptian jerboa	MODERN SPECIES	49	ENSJJAG00000024157	Gpnmb (ENSJJAG00000016316)	Nupl2 (ENSJJAG00000016370)	Klhl7 (ENSJJAG00000020404)	Hycc1 (ENSJJAG00000010769) #8	Tomm7 (ENSJJAG00000015481) #10	ENSJJAG00000012041 #11	Rapgef5 (ENSJJAG00000011120) #14	Cdca7l (ENSJJAG00000019084) #15	Dnah11 (ENSJJAG00000016436) #17	Sp4 (ENSJJAG00000005918) #18	ENSJJAG00000007215 #19	Abcb5 (ENSJJAG00000012546) #20	Itgb8 (ENSJJAG00000010258) #21	ENSJJAG00000022523	Macc1 (ENSJJAG00000011164) #22	ENSJJAG00000018343	Tmem196 (ENSJJAG00000016048)	Polr1f (ENSJJAG00000015887) #25	ENSJJAG00000002041	ENSJJAG00000007778	ENSJJAG00000022475 ##29	Snx13 (ENSJJAG00000023704) #30	ENSJJAG00000008319 ##32	Agr3 (ENSJJAG00000017440) ##34	Agr2 (ENSJJAG00000008799) #34	Tspan13 (ENSJJAG00000009446) #33	Bzw2 (ENSJJAG00000016668) #35	Ankmy2 (ENSJJAG00000021161) #36	ENSJJAG00000023577 #37	Sostdc1 (ENSJJAG00000010091)
Kangaroo rat	MODERN SPECIES	391								ENSDORG00000023585 #14	Rapgef5 (ENSDORG00000007969) #14	Cdca7l (ENSDORG00000005901) #15	Dnah11 (ENSDORG00000005890) #17	Sp4 (ENSDORG00000029615) #18	Sp8 (ENSDORG00000024994) #19	Abcb5 (ENSDORG00000000201) #20	Itgb8 (ENSDORG00000000272) #21	Macc1 (ENSDORG00000010765) #22	ENSDORG00000029943	ENSDORG00000027869	Tmem196 (ENSDORG00000007796)	Polr1f (ENSDORG00000007795) #25	Ferd3l (ENSDORG00000012867) #26	ENSDORG00000023238	Snx13 (ENSDORG00000005766) #30	Ahr (ENSDORG00000007750) #32	ENSDORG00000029209	Agr3 (ENSDORG00000007740) ##34	Agr2 (ENSDORG00000007734) #34	Tspan13 (ENSDORG00000030021) #33	Bzw2 (ENSDORG00000010878) #35	Ankmy2 (ENSDORG00000010876) #36	ENSDORG00000010873 #37
Lagomorpha	ANCESTRAL SPECIES	39	ENSGT00910000147494	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878.e #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30
Rabbit	MODERN SPECIES	1	NUP42 (ENSOCUG00000014808)	KLHL7 (ENSOCUG00000014780)	HYCC1 (ENSOCUG00000006565) #8	ENSOCUG00000036787	ENSOCUG00000029441	ENSOCUG00000037710 #10	ENSOCUG00000027471 #11	RAPGEF5 (ENSOCUG00000015115) #14	ENSOCUG00000030459	ENSOCUG00000023674	CDCA7L (ENSOCUG00000014023) #15	SP4 (ENSOCUG00000015345) #18	ENSOCUG00000036529	ABCB5 (ENSOCUG00000010857) #20	ITGB8 (ENSOCUG00000002197) #21	MACC1 (ENSOCUG00000003618) #22	TMEM196 (ENSOCUG00000015153) #24	ENSOCUG00000015156 #25	HDAC9 (ENSOCUG00000014444) #28	SNX13 (ENSOCUG00000001142) #30
Pika	MODERN SPECIES	3969																MACC1 (ENSOPRG00000017076) #22
Tree shrew	MODERN SPECIES	4464																MACC1 (ENSTBEG00000003089) #22
Primates	ANCESTRAL SPECIES	12	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00910000147712	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a
Haplorrhini	ANCESTRAL SPECIES	8	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00910000147712	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a
Simiiformes	ANCESTRAL SPECIES	12	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00910000147712	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a
Catarrhini	ANCESTRAL SPECIES	6	ENSGT00950000183188.B	ENSGT00940000163505.a.b	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00390000007456	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00910000147712	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a
Hominoidea	ANCESTRAL SPECIES	6	ENSGT00940000163505.a.b	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00390000007456	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00910000148420	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182803.B.d.a.i.a #29	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000157795.b	ENSGT00940000153289.a.b
Hominidae	ANCESTRAL SPECIES	11	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00390000007456	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00910000148420	ENSGT00940000157827 #18	ENSGT00390000004524.c.a.a.b.b	ENSGT00390000012691.c.a.b	ENSGT00390000004690.a.b.h	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182803.B.d.a.i.a #29	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000157795.b	ENSGT00940000153289.a.b
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	25	ENSGT00390000000878 #11	ENSGT00390000007456	ENSGT00390000008042.A.a.b.d	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00910000148420	ENSGT00940000157827 #18	ENSGT00390000004524.c.a.a.b.b	ENSGT00390000012691.c.a.b	ENSGT00390000004690.a.b.h	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT00940000155142.i.a.b	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182803.B.d.a.i.a #29	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00440000039046.b	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820.b #36	ENSGT00940000157795.b
Homo/Pan group	ANCESTRAL SPECIES	24	ENSGT00390000002517.b	ENSGT00390000000878 #11	ENSGT00390000007456	ENSGT00390000008042.A.a.b.d	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00910000148420	ENSGT00940000157827 #18	ENSGT00390000012691.c.a.b	ENSGT00390000004690.a.b.h	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT00940000155142.i.a.b	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182803.B.d.a.i.a #29	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00440000039046.b	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820.b #36	ENSGT00940000157795.b
Pan	ANCESTRAL SPECIES	25	ENSGT00390000002517.b	ENSGT00390000000878 #11	ENSGT00390000007456	ENSGT00390000008042.A.a.b.d	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00910000148420	ENSGT00940000157827 #18	ENSGT00390000012691.c.a.b	ENSGT00390000004690.a.b.h	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT00940000155142.i.a.b	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00440000039046.b	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820.a #36	ENSGT00390000016820.b #36	ENSGT00940000157795.b
Chimpanzee	DUPLICATION
Chimpanzee	MODERN SPECIES	20	TOMM7 (ENSPTRG00000018980) #10	ENSPTRG00000052763	ENSPTRG00000047418	IL6 (ENSPTRG00000018979) #11	ENSPTRG00000051768	ENSPTRG00000052284	RAPGEF5 (ENSPTRG00000018976) #14	ENSPTRG00000050953	CDCA7L (ENSPTRG00000018975) #15	DNAH11 (ENSPTRG00000049017) #17	SP4 (ENSPTRG00000018970) #18	ENSPTRG00000051657	SP8 (ENSPTRG00000018968) #19	ABCB5 (ENSPTRG00000018966) #20	ITGB8 (ENSPTRG00000018965) #21	MACC1 (ENSPTRG00000018964) #22	TMEM196 (ENSPTRG00000018963) #24	POLR1F (ENSPTRG00000018962) #25	FERD3L (ENSPTRG00000018961) #26	TWIST1 (ENSPTRG00000018960) #27	HDAC9 (ENSPTRG00000018959) #28	SNX13 (ENSPTRG00000018957) #30	AHR (ENSPTRG00000018955) #32	ENSPTRG00000050595	AGR3 (ENSPTRG00000018954) ##34	AGR2 (ENSPTRG00000018953) #34	TSPAN13 (ENSPTRG00000018952) #33	BZW2 (ENSPTRG00000018951) #35	ANKMY2 (ENSPTRG00000018950) #36	ENSPTRG00000000567	LRRC72 (ENSPTRG00000028653)
Chimpanzee	MODERN SPECIES	583															ENSPTRG00000052863 #21	ENSPTRG00000051620 #22
Bonobo	MODERN SPECIES	20	ENSPPAG00000022918	ENSPPAG00000035732 #11	ENSPPAG00000034348	ENSPPAG00000041225 #14	ENSPPAG00000041457	CDCA7L (ENSPPAG00000037358) #15	DNAH11 (ENSPPAG00000043198) #17	ENSPPAG00000029065	SP4 (ENSPPAG00000035736) #18	ENSPPAG00000030781	ENSPPAG00000029131	ENSPPAG00000036145 #19	ABCB5 (ENSPPAG00000039922) #20	ENSPPAG00000028502	ITGB8 (ENSPPAG00000043938) #21	MACC1 (ENSPPAG00000030497) #22	TMEM196 (ENSPPAG00000028334) #24	POLR1F (ENSPPAG00000034623) #25	FERD3L (ENSPPAG00000010360) #26	ENSPPAG00000041192 #27	HDAC9 (ENSPPAG00000043202) #28	SNX13 (ENSPPAG00000028500) #30	AHR (ENSPPAG00000030245) #32	ENSPPAG00000038575	AGR3 (ENSPPAG00000031582) ##34	AGR2 (ENSPPAG00000037458) #34	TSPAN13 (ENSPPAG00000013639) #33	BZW2 (ENSPPAG00000029762) #35	ANKMY2 (ENSPPAG00000043278) #36	ENSPPAG00000036236	LRRC72 (ENSPPAG00000033885)
Human	MODERN SPECIES	19	MALSU1 (ENSG00000156928)	GPNMB (ENSG00000136235)	NUP42 (ENSG00000136243)	KLHL7 (ENSG00000122550)	HYCC1 (ENSG00000122591) #8	TOMM7 (ENSG00000196683) #10	IL6 (ENSG00000136244) #11	STEAP1B (ENSG00000105889)	RAPGEF5 (ENSG00000136237) #14	CDCA7L (ENSG00000164649) #15	DNAH11 (ENSG00000105877) #17	SP4 (ENSG00000105866) #18	SP8 (ENSG00000164651) #19	ABCB5 (ENSG00000004846) #20	ITGB8 (ENSG00000105855) #21	MACC1 (ENSG00000183742) #22	TMEM196 (ENSG00000173452) #24	POLR1F (ENSG00000105849) #25	FERD3L (ENSG00000146618) #26	TWIST1 (ENSG00000122691) #27	HDAC9 (ENSG00000048052) #28	PRPS1L1 (ENSG00000229937) #29	SNX13 (ENSG00000071189) #30	ENSG00000283321	AHR (ENSG00000106546) #32	AGR3 (ENSG00000173467) ##34	AGR2 (ENSG00000106541) #34	TSPAN13 (ENSG00000106537) #33	BZW2 (ENSG00000136261) #35	ANKMY2 (ENSG00000106524) #36	LRRC72 (ENSG00000205858)
Gorilla	MODERN SPECIES	20	ENSGGOG00000025021 #10	ENSGGOG00000028092	ENSGGOG00000036649	IL6 (ENSGGOG00000005335) #11	ENSGGOG00000001859	RAPGEF5 (ENSGGOG00000017128) #14	CDCA7L (ENSGGOG00000004782) #15	DNAH11 (ENSGGOG00000004748) #17	SP4 (ENSGGOG00000001332) #18	ENSGGOG00000025012	ENSGGOG00000025589	ENSGGOG00000001311	ABCB5 (ENSGGOG00000008618) #20	ENSGGOG00000039456	ITGB8 (ENSGGOG00000002471) #21	MACC1 (ENSGGOG00000005884) #22	TMEM196 (ENSGGOG00000005711) #24	TWISTNB (ENSGGOG00000026888) #25	FERD3L (ENSGGOG00000021943) #26	HDAC9 (ENSGGOG00000013656) #28	PRPS1L1 (ENSGGOG00000025809) #29	SNX13 (ENSGGOG00000010291) #30	AHR (ENSGGOG00000011367) #32	ENSGGOG00000038771	AGR3 (ENSGGOG00000003470) ##34	AGR2 (ENSGGOG00000012859) #34	TSPAN13 (ENSGGOG00000011165) #33	BZW2 (ENSGGOG00000022223) #35	ANKMY2 (ENSGGOG00000007522) #36	ENSGGOG00000036669	LRRC72 (ENSGGOG00000005060)
Orangutan	MODERN SPECIES	20	NUP42 (ENSPPYG00000031100)	ENSPPYG00000029950	KLHL7 (ENSPPYG00000017736)	HYCC1 (ENSPPYG00000017738) #8	ENSPPYG00000017739 #10	IL6 (ENSPPYG00000017740) #11	ENSPPYG00000017741	RAPGEF5 (ENSPPYG00000017742) #14	CDCA7L (ENSPPYG00000017744) #15	DNAH11 (ENSPPYG00000017745) #17	SP4 (ENSPPYG00000017746) #18	ENSPPYG00000039103	SP8 (ENSPPYG00000039855) #19	ABCB5 (ENSPPYG00000017748) #20	ITGB8 (ENSPPYG00000017749) #21	MACC1 (ENSPPYG00000017750) #22	TMEM196 (ENSPPYG00000017751) #24	POLR1F (ENSPPYG00000032278) #25	FERD3L (ENSPPYG00000017753) #26	TWIST1 (ENSPPYG00000017754) #27	HDAC9 (ENSPPYG00000017755) #28	SNX13 (ENSPPYG00000017757) #30	AHR (ENSPPYG00000017758) #32	AGR3 (ENSPPYG00000017760) ##34	AGR2 (ENSPPYG00000017761) #34	TSPAN13 (ENSPPYG00000017762) #33	BZW2 (ENSPPYG00000017763) #35	ANKMY2 (ENSPPYG00000017764) #36	LRRC72 (ENSPPYG00000035210)	SOSTDC1 (ENSPPYG00000017767)	CRPPA (ENSPPYG00000017768)
Gibbon	MODERN SPECIES	1	ENSNLEG00000016798	HYCC1 (ENSNLEG00000016785) #8	ENSNLEG00000032170 #10	ENSNLEG00000016777 #11	RAPGEF5 (ENSNLEG00000016769) #14	CDCA7L (ENSNLEG00000016758) #15	DNAH11 (ENSNLEG00000016739) #17	ENSNLEG00000029437	SP4 (ENSNLEG00000016733) #18	ENSNLEG00000026698	ENSNLEG00000032580	ENSNLEG00000032986	SP8 (ENSNLEG00000016729) #19	ABCB5 (ENSNLEG00000016694) #20	ITGB8 (ENSNLEG00000016686) #21	MACC1 (ENSNLEG00000016683) #22	TMEM196 (ENSNLEG00000016677) #24	POLR1F (ENSNLEG00000035755) #25	FERD3L (ENSNLEG00000019265) #26	ENSNLEG00000019263	HDAC9 (ENSNLEG00000016612) #28	SNX13 (ENSNLEG00000016555) #30	AHR (ENSNLEG00000016550) #32	AGR3 (ENSNLEG00000016546) ##34	AGR2 (ENSNLEG00000016530) #34	TSPAN13 (ENSNLEG00000016510) #33	BZW2 (ENSNLEG00000016417) #35	ANKMY2 (ENSNLEG00000016394) #36	ENSNLEG00000033414	LRRC72 (ENSNLEG00000016389)	SOSTDC1 (ENSNLEG00000016384)
Cercopithecidae	ANCESTRAL SPECIES	11	ENSGT00950000183188.B	ENSGT00940000163505.a.b	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00390000007456	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000162047.h	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00910000147712	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b
Cercopithecinae	ANCESTRAL SPECIES	8	ENSGT00940000163505.a.b	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00390000007456	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000017606.a.a.i.a.b.a.a.c.b	ENSGT00390000013151.a.b #22	ENSGT00940000162047.h	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00910000147712	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b
Cercopithecinae_a	ANCESTRAL SPECIES	8	ENSGT00940000163505.a.b.a.a	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00390000007456	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000017606.a.a.i.a.b.a.a.c.b	ENSGT00390000013151.a.b #22	ENSGT00940000162047.h	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00910000147712	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b
Macaca	ANCESTRAL SPECIES	3	ENSGT00950000183188.B	ENSGT00940000163505.a.b.a.a	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00390000007456	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00390000006548.b.j.a.d	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a
Macaca_a	ANCESTRAL SPECIES	7	ENSGT00950000183188.B	ENSGT00940000163505.a.b.a.a	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00390000007456	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00390000006548.b.j.a.d	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a
Rhesus	MODERN SPECIES	13	MALSU1 (ENSMMUG00000061041)	GPNMB (ENSMMUG00000012648)	ENSMMUG00000064876	NUP42 (ENSMMUG00000001560)	KLHL7 (ENSMMUG00000001562)	HYCC1 (ENSMMUG00000000517) #8	TOMM7 (ENSMMUG00000065311) #10	IL6 (ENSMMUG00000019983) #11	ENSMMUG00000056674	RAPGEF5 (ENSMMUG00000002987) #14	CDCA7L (ENSMMUG00000022766) #15	SP4 (ENSMMUG00000021684) #18	SP8 (ENSMMUG00000003722) #19	ABCB5 (ENSMMUG00000007821) #20	ITGB8 (ENSMMUG00000006898) #21	MACC1 (ENSMMUG00000022683) #22	TMEM196 (ENSMMUG00000009610) #24	POLR1F (ENSMMUG00000009609) #25	HDAC9 (ENSMMUG00000011170) #28	ENSMMUG00000053098	PRPS1L1 (ENSMMUG00000009748) #29	SNX13 (ENSMMUG00000021915) #30	ENSMMUG00000062260	AHR (ENSMMUG00000012203) #32	ENSMMUG00000031775	ENSMMUG00000051849	AGR3 (ENSMMUG00000016017) ##34	AGR2 (ENSMMUG00000017050) #34	TSPAN13 (ENSMMUG00000017049) #33	BZW2 (ENSMMUG00000017045) #35	ANKMY2 (ENSMMUG00000017041) #36
Crab-eating macaque	MODERN SPECIES	13	ENSMFAG00000035836 #10	IL6 (ENSMFAG00000000229) #11	ENSMFAG00000054566	ENSMFAG00000051658	RAPGEF5 (ENSMFAG00000002425) #14	CDCA7L (ENSMFAG00000001391) #15	DNAH11 (ENSMFAG00000044423) #17	SP4 (ENSMFAG00000002740) #18	SP8 (ENSMFAG00000055927) #19	ABCB5 (ENSMFAG00000020450) #20	ENSMFAG00000054030	ENSMFAG00000062991	ENSMFAG00000065699	ENSMFAG00000034604	ITGB8 (ENSMFAG00000000217) #21	MACC1 (ENSMFAG00000031393) #22	TMEM196 (ENSMFAG00000049094) #24	POLR1F (ENSMFAG00000045328) #25	ENSMFAG00000029127	FERD3L (ENSMFAG00000019773) #26	TWIST1 (ENSMFAG00000045982) #27	ENSMFAG00000051581	HDAC9 (ENSMFAG00000008589) #28	PRPS1L1 (ENSMFAG00000039072) #29	SNX13 (ENSMFAG00000039975) #30	ENSMFAG00000053612	AHR (ENSMFAG00000035664) #32	AGR3 (ENSMFAG00000035722) ##34	AGR2 (ENSMFAG00000035645) #34	ENSMFAG00000003639 #33	BZW2 (ENSMFAG00000002705) #35
Pig-tailed macaque	MODERN SPECIES	534	MALSU1 (ENSMNEG00000035724)	GPNMB (ENSMNEG00000036790)	NUP42 (ENSMNEG00000006026)	KLHL7 (ENSMNEG00000036449)	HYCC1 (ENSMNEG00000024817) #8	ENSMNEG00000036770 #10	IL6 (ENSMNEG00000003406) #11	RAPGEF5 (ENSMNEG00000032992) #14	CDCA7L (ENSMNEG00000038917) #15	DNAH11 (ENSMNEG00000037208) #17	SP4 (ENSMNEG00000038124) #18	ENSMNEG00000030054	SP8 (ENSMNEG00000028781) #19	ABCB5 (ENSMNEG00000043301) #20	ITGB8 (ENSMNEG00000037384) #21	MACC1 (ENSMNEG00000040192) #22	TMEM196 (ENSMNEG00000028154) #24	POLR1F (ENSMNEG00000041159) #25	ENSMNEG00000029122	FERD3L (ENSMNEG00000000812) #26	ENSMNEG00000003361	HDAC9 (ENSMNEG00000043567) #28	SNX13 (ENSMNEG00000040568) #30	AHR (ENSMNEG00000037051) #32	AGR3 (ENSMNEG00000030796) ##34	AGR2 (ENSMNEG00000040536) #34	TSPAN13 (ENSMNEG00000035525) #33	BZW2 (ENSMNEG00000002080) #35	ANKMY2 (ENSMNEG00000029729) #36	LRRC72 (ENSMNEG00000040980)	SOSTDC1 (ENSMNEG00000042644)
Cercopithecinae_b	ANCESTRAL SPECIES	11	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00390000007456	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000017606.a.a.i.a.b.a.a.c.b	ENSGT00390000013151.a.b #22	ENSGT00940000162047.h	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00910000147712	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b
Cercopithecinae_d	ANCESTRAL SPECIES	10	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00390000004524.c.a.a.b.b	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000017606.a.a.i.a.b.a.a.c.b	ENSGT00390000013151.a.b #22	ENSGT00940000162047.h	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00910000147712	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b
Drill	MODERN SPECIES	420	MALSU1 (ENSMLEG00000041736)	GPNMB (ENSMLEG00000042619)	NUP42 (ENSMLEG00000036917)	KLHL7 (ENSMLEG00000034863)	HYCC1 (ENSMLEG00000029209) #8	ENSMLEG00000026554 #10	IL6 (ENSMLEG00000034011) #11	RAPGEF5 (ENSMLEG00000042037) #14	CDCA7L (ENSMLEG00000044429) #15	DNAH11 (ENSMLEG00000021317) #17	SP4 (ENSMLEG00000042211) #18	ENSMLEG00000035908	ENSMLEG00000041341	ABCB5 (ENSMLEG00000034697) #20	ITGB8 (ENSMLEG00000037210) #21	MACC1 (ENSMLEG00000044226) #22	ENSMLEG00000033513	TMEM196 (ENSMLEG00000044198) #24	POLR1F (ENSMLEG00000042783) #25	ENSMLEG00000034959	FERD3L (ENSMLEG00000018020) #26	TWIST1 (ENSMLEG00000036035) #27	ENSMLEG00000008070	HDAC9 (ENSMLEG00000035193) #28	SNX13 (ENSMLEG00000041046) #30	AHR (ENSMLEG00000029744) #32
Sooty mangabey	MODERN SPECIES	147								CDCA7L (ENSCATG00000032002) #15	DNAH11 (ENSCATG00000022060) #17	SP4 (ENSCATG00000017624) #18	ENSCATG00000008206	SP8 (ENSCATG00000036724) #19	ABCB5 (ENSCATG00000044646) #20	ITGB8 (ENSCATG00000040735) #21	ENSCATG00000015015	MACC1 (ENSCATG00000030512) #22	ENSCATG00000035531	TMEM196 (ENSCATG00000038942) #24	POLR1F (ENSCATG00000035621) #25	FERD3L (ENSCATG00000018900) #26	ENSCATG00000018918	HDAC9 (ENSCATG00000037558) #28	SNX13 (ENSCATG00000042039) #30	AHR (ENSCATG00000044976) #32	AGR3 (ENSCATG00000035431) ##34	AGR2 (ENSCATG00000037807) #34	TSPAN13 (ENSCATG00000035412) #33	BZW2 (ENSCATG00000040929) #35	ANKMY2 (ENSCATG00000034081) #36	LRRC72 (ENSCATG00000013629)	SOSTDC1 (ENSCATG00000038465)
Olive baboon	MODERN SPECIES	14	NUP42 (ENSPANG00000005682)	KLHL7 (ENSPANG00000025374)	HYCC1 (ENSPANG00000022515) #8	ENSPANG00000008241 #10	IL6 (ENSPANG00000000700) #11	ENSPANG00000046282	RAPGEF5 (ENSPANG00000000701) #14	CDCA7L (ENSPANG00000012840) #15	DNAH11 (ENSPANG00000021596) #17	SP4 (ENSPANG00000006251) #18	SP8 (ENSPANG00000023061) #19	ENSPANG00000046908	ABCB5 (ENSPANG00000011492) #20	ENSPANG00000050246	ITGB8 (ENSPANG00000006887) #21	MACC1 (ENSPANG00000006404) #22	TMEM196 (ENSPANG00000045812) #24	POLR1F (ENSPANG00000015736) #25	ENSPANG00000029384	FERD3L (ENSPANG00000010936) #26	TWIST1 (ENSPANG00000041053) #27	ENSPANG00000038169 #28	ENSPANG00000022056 #28	ENSPANG00000045769	PRPS1L1 (ENSPANG00000015919) #29	SNX13 (ENSPANG00000004971) #30	AHR (ENSPANG00000002444) #32	AGR3 (ENSPANG00000013000) ##34	ENSPANG00000025373 #35	ANKMY2 (ENSPANG00000024070) #36	LRRC72 (ENSPANG00000015803)
Vervet Monkey	MODERN SPECIES	13	MALSU1 (ENSCSAG00000013969)	GPNMB (ENSCSAG00000013965)	NUP42 (ENSCSAG00000013956)	KLHL7 (ENSCSAG00000013950)	HYCC1 (ENSCSAG00000013945) #8	TOMM7 (ENSCSAG00000013939) #10	IL6 (ENSCSAG00000013925) #11	RAPGEF5 (ENSCSAG00000013898) #14	CDCA7L (ENSCSAG00000013887) #15	DNAH11 (ENSCSAG00000013803) #17	SP4 (ENSCSAG00000013609) #18	SP8 (ENSCSAG00000013600) #19	ABCB5 (ENSCSAG00000013593) #20	ITGB8 (ENSCSAG00000013574) #21	ENSCSAG00000019608	MACC1 (ENSCSAG00000013560) #22	ENSCSAG00000013550	ENSCSAG00000013547	POLR1F (ENSCSAG00000013544) #25	FERD3L (ENSCSAG00000019609) #26	TWIST1 (ENSCSAG00000019610) #27	ENSCSAG00000013542 #28	ENSCSAG00000013539 #28	ENSCSAG00000013537 #28	PRPS1L1 (ENSCSAG00000019611) #29	SNX13 (ENSCSAG00000013523) #30	AHR (ENSCSAG00000013508) #32	AGR3 (ENSCSAG00000013496) ##34	AGR2 (ENSCSAG00000013491) #34	TSPAN13 (ENSCSAG00000013482) #33	BZW2 (ENSCSAG00000013474) #35
Rhinopithecus	ANCESTRAL SPECIES	263				ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00390000002062.h	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00390000004524.c.a.a.b.b	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000162047.h	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00910000147712	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30
Golden snub-nosed monkey	MODERN SPECIES	3303															ITGB8 (ENSRROG00000002836) #21	MACC1 (ENSRROG00000006887) #22	ENSRROG00000037451	TMEM196 (ENSRROG00000043909) #24	POLR1F (ENSRROG00000040155) #25	ENSRROG00000018167	FERD3L (ENSRROG00000012883) #26	TWIST1 (ENSRROG00000038605) #27	ENSRROG00000017726	HDAC9 (ENSRROG00000031560) #28	ENSRROG00000030725	ENSRROG00000031273 #30
Black snub-nosed monkey	MODERN SPECIES	378		HYCC1 (ENSRBIG00000041875) #8	ENSRBIG00000043074 #10	IL6 (ENSRBIG00000044039) #11	ENSRBIG00000022043	ENSRBIG00000029815	RAPGEF5 (ENSRBIG00000020324) #14	CDCA7L (ENSRBIG00000000806) #15	DNAH11 (ENSRBIG00000034224) #17	SP4 (ENSRBIG00000039879) #18	ENSRBIG00000003508	ENSRBIG00000034971	SP8 (ENSRBIG00000028482) #19	ABCB5 (ENSRBIG00000042594) #20	ITGB8 (ENSRBIG00000040861) #21	MACC1 (ENSRBIG00000033021) #22	ENSRBIG00000024429
Platyrrhini	ANCESTRAL SPECIES	10	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118.n	ENSGT00940000155602.a	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a	ENSGT00390000006412
Cebidae	ANCESTRAL SPECIES	9	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118.n	ENSGT00940000155602.a	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182803.B.d.a.i.a.fb.a #29	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a
Cebidae_a	ANCESTRAL SPECIES	7	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118.n	ENSGT00940000155602.a	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00910000147712	ENSGT00940000160307 #28	ENSGT00950000182803.B.d.a.i.a.fb.a #29	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a	ENSGT00390000006412
Bolivian squirrel monkey	MODERN SPECIES	109	CCNJL (ENSSBOG00000022971)	C1QTNF2 (ENSSBOG00000032053)	FAM200C (ENSSBOG00000018847)	SLU7 (ENSSBOG00000003225)	ENSSBOG00000012956	ATP10B (ENSSBOG00000031861)	ENSSBOG00000021032	GABRB2 (ENSSBOG00000006216)	GABRA6 (ENSSBOG00000028112)	GABRA1 (ENSSBOG00000029701)	GABRG2 (ENSSBOG00000027465)	NUDCD2 (ENSSBOG00000028393)	ENSSBOG00000027545	MAT2B (ENSSBOG00000035087)	ITGB8 (ENSSBOG00000028143) #21	MACC1 (ENSSBOG00000026938) #22	TMEM196 (ENSSBOG00000023617) #24	POLR1F (ENSSBOG00000023188) #25
Capuchin	MODERN SPECIES	45	KLHL7 (ENSCCAG00000031111)	ENSCCAG00000032424	FAM126A (ENSCCAG00000027272) #8	TOMM7 (ENSCCAG00000033041) #10	IL6 (ENSCCAG00000023712) #11	RAPGEF5 (ENSCCAG00000019957) #14	CDCA7L (ENSCCAG00000021172) #15	ENSCCAG00000037585	DNAH11 (ENSCCAG00000035150) #17	ENSCCAG00000035249	SP4 (ENSCCAG00000030472) #18	ENSCCAG00000033872	SP8 (ENSCCAG00000030995) #19	ABCB5 (ENSCCAG00000031192) #20	ITGB8 (ENSCCAG00000037918) #21	MACC1 (ENSCCAG00000013469) #22	TMEM196 (ENSCCAG00000030192) #24	POLR1F (ENSCCAG00000026416) #25	ENSCCAG00000020115	ENSCCAG00000019905	HDAC9 (ENSCCAG00000020834) #28	ENSCCAG00000027532	SNX13 (ENSCCAG00000030831) #30	ENSCCAG00000013414	AHR (ENSCCAG00000027846) #32	AGR3 (ENSCCAG00000035875) ##34	AGR2 (ENSCCAG00000037867) #34	TSPAN13 (ENSCCAG00000020472) #33	BZW2 (ENSCCAG00000028749) #35	ANKMY2 (ENSCCAG00000038043) #36	LRRC72 (ENSCCAG00000031114)
Marmoset	MODERN SPECIES	20	ENSCJAG00000086172	NUP42 (ENSCJAG00000001466)	KLHL7 (ENSCJAG00000001422)	ENSCJAG00000072766	HYCC1 (ENSCJAG00000001415) #8	ENSCJAG00000077464	ENSCJAG00000047185 #10	IL6 (ENSCJAG00000001400) #11	RAPGEF5 (ENSCJAG00000036784) #14	CDCA7L (ENSCJAG00000001351) #15	DNAH11 (ENSCJAG00000001301) #17	SP4 (ENSCJAG00000001282) #18	SP8 (ENSCJAG00000001245) #19	ABCB5 (ENSCJAG00000001194) #20	ITGB8 (ENSCJAG00000001171) #21	MACC1 (ENSCJAG00000001164) #22	TMEM196 (ENSCJAG00000001161) #24	POLR1F (ENSCJAG00000001148) #25	FERD3L (ENSCJAG00000038997) #26	TWIST1 (ENSCJAG00000048476) #27	HDAC9 (ENSCJAG00000001076) #28	ENSCJAG00000055908	ENSCJAG00000084748	ENSCJAG00000078064	PRPS1L1 (ENSCJAG00000084763) #29	SNX13 (ENSCJAG00000001040) #30	ENSCJAG00000072238	ENSCJAG00000080286	AHR (ENSCJAG00000001029) #32	AGR3 (ENSCJAG00000001020) ##34	AGR2 (ENSCJAG00000000997) #34
Mas night monkey	MODERN SPECIES	1246															ENSANAG00000020388	MACC1 (ENSANAG00000025893) #22	TMEM196 (ENSANAG00000020365) #24	POLR1F (ENSANAG00000026418) #25
Tarsier	MODERN SPECIES	6203													ENSTSYG00000035852 #20	ENSTSYG00000030857	ITGB8 (ENSTSYG00000005437) #21	MACC1 (ENSTSYG00000009061) #22
Strepsirrhini	ANCESTRAL SPECIES	9	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00910000147712	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a	ENSGT00390000006412
Lemuriformes	ANCESTRAL SPECIES	4	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00910000147712	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a	ENSGT00390000006412
Lemuriformes_a	ANCESTRAL SPECIES	109	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833.k #10	ENSGT00390000014833.l #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00910000147712	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a	ENSGT00390000006412
Coquerels sifaka	MODERN SPECIES	770	MALSU1 (ENSPCOG00000023462)	GPNMB (ENSPCOG00000018874)	ENSPCOG00000026578	KLHL7 (ENSPCOG00000019482)	HYCC1 (ENSPCOG00000027753) #8	TOMM7 (ENSPCOG00000025812) #10	ENSPCOG00000015406 #11	RAPGEF5 (ENSPCOG00000024208) #14	CDCA7L (ENSPCOG00000006365) #15	ENSPCOG00000006256	DNAH11 (ENSPCOG00000015545) #17	SP4 (ENSPCOG00000014034) #18	SP8 (ENSPCOG00000010150) #19	ABCB5 (ENSPCOG00000019076) #20	ITGB8 (ENSPCOG00000020325) #21	MACC1 (ENSPCOG00000015984) #22	ENSPCOG00000013796	ENSPCOG00000004583	TMEM196 (ENSPCOG00000018528) #24	POLR1F (ENSPCOG00000017601) #25	HDAC9 (ENSPCOG00000022707) #28	ENSPCOG00000007173	SNX13 (ENSPCOG00000025896) #30	AHR (ENSPCOG00000027017) #32	AGR2 (ENSPCOG00000020586) #34	TSPAN13 (ENSPCOG00000000668) #33	BZW2 (ENSPCOG00000014275) #35	ANKMY2 (ENSPCOG00000017740) #36	LRRC72 (ENSPCOG00000025114)	SOSTDC1 (ENSPCOG00000015087)	ENSPCOG00000000682
Greater bamboo lemur	MODERN SPECIES	513																MACC1 (ENSPSMG00000016327) #22	TMEM196 (ENSPSMG00000016348) #24	ENSPSMG00000016354	POLR1F (ENSPSMG00000016361) #25	FERD3L (ENSPSMG00000016366) #26	ENSPSMG00000016380	HDAC9 (ENSPSMG00000016568) #28	SNX13 (ENSPSMG00000016751) #30	ENSPSMG00000016770	AHR (ENSPSMG00000016802) #32	AGR3 (ENSPSMG00000016834) ##34	AGR2 (ENSPSMG00000016851) #34	TSPAN13 (ENSPSMG00000016888) #33	BZW2 (ENSPSMG00000016967) #35	ANKMY2 (ENSPSMG00000017011) #36	LRRC72 (ENSPSMG00000017047)
Mouse lemur	MODERN SPECIES	2	IGF2BP3 (ENSMICG00000013683)	MALSU1 (ENSMICG00000033474)	GPNMB (ENSMICG00000013667)	NUP42 (ENSMICG00000046211)	KLHL7 (ENSMICG00000013635)	HYCC1 (ENSMICG00000006711) #8	TOMM7 (ENSMICG00000006709) #10	ENSMICG00000006701 #11	RAPGEF5 (ENSMICG00000006685) #14	CDCA7L (ENSMICG00000008539) #15	DNAH11 (ENSMICG00000008480) #17	SP4 (ENSMICG00000034088) #18	SP8 (ENSMICG00000037978) #19	ABCB5 (ENSMICG00000013242) #20	ITGB8 (ENSMICG00000009239) #21	MACC1 (ENSMICG00000027329) #22	TMEM196 (ENSMICG00000028950) #24	POLR1F (ENSMICG00000036489) #25	ENSMICG00000033981	HDAC9 (ENSMICG00000000850) #28	SNX13 (ENSMICG00000014067) #30	ENSMICG00000045138	AHR (ENSMICG00000011723) #32	AGR3 (ENSMICG00000013575) ##34	AGR2 (ENSMICG00000015349) #34	TSPAN13 (ENSMICG00000015312) #33	BZW2 (ENSMICG00000015293) #35	ANKMY2 (ENSMICG00000009932) #36	ENSMICG00000036491 #37	SOSTDC1 (ENSMICG00000015715)	CRPPA (ENSMICG00000047544)
Bushbaby	MODERN SPECIES	143	MALSU1 (ENSOGAG00000017157)	GPNMB (ENSOGAG00000017155)	NUP42 (ENSOGAG00000017153)	KLHL7 (ENSOGAG00000017098)	HYCC1 (ENSOGAG00000002456) #8	ENSOGAG00000029286 #9	ENSOGAG00000004177 #11	RAPGEF5 (ENSOGAG00000013911) #14	CDCA7L (ENSOGAG00000009860) #15	DNAH11 (ENSOGAG00000009835) #17	SP4 (ENSOGAG00000007284) #18	ENSOGAG00000026884	ENSOGAG00000025614	ABCB5 (ENSOGAG00000009068) #20	ITGB8 (ENSOGAG00000003839) #21	MACC1 (ENSOGAG00000006910) #22	TMEM196 (ENSOGAG00000009193) #24	POLR1F (ENSOGAG00000009189) #25	FERD3L (ENSOGAG00000014773) #26	HDAC9 (ENSOGAG00000007864) #28	SNX13 (ENSOGAG00000001781) #30	AHR (ENSOGAG00000012656) #32
Laurasiatheria	ANCESTRAL SPECIES	22	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00940000164650 #9	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00910000147712	ENSGT00940000160307 #28	ENSGT00950000182803.B.d.a.i.a #29	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000013151.a.b #22
Hedgehog	MODERN SPECIES	7552																MACC1 (ENSEEUG00000004232) #22
Common shrew	MODERN SPECIES	5922																ENSSARG00000008285 #22
Laurasiatheria_a	ANCESTRAL SPECIES	14	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00940000164650 #9	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00910000147712	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a
Artiodactyla	ANCESTRAL SPECIES	11	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00910000147712	ENSGT00940000160307 #28	ENSGT00950000182803.B.d.a.j ##29	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b
Suina	ANCESTRAL SPECIES	15	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182803.B.d.a.j ##29	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a
Pig	MODERN SPECIES	17	TOMM7 (ENSSSCG00000015384) #10	IL6 (ENSSSCG00000020970) #11	ENSSSCG00000015383 #14	ENSSSCG00000054384 #14	ENSSSCG00000035257	CDCA7L (ENSSSCG00000015380) #15	ENSSSCG00000042226	ENSSSCG00000042690	DNAH11 (ENSSSCG00000015379) #17	SP4 (ENSSSCG00000015378) #18	ENSSSCG00000052264	SP8 (ENSSSCG00000031078) #19	ENSSSCG00000053532	ABCB5 (ENSSSCG00000015377) #20	ITGB8 (ENSSSCG00000015375) #21	MACC1 (ENSSSCG00000024802) #22	TMEM196 (ENSSSCG00000015373) #24	POLR1F (ENSSSCG00000025298) #25	FERD3L (ENSSSCG00000015371) #26	TWIST1 (ENSSSCG00000058909) #27	HDAC9 (ENSSSCG00000015368) #28	SNX13 (ENSSSCG00000024761) #30	AHR (ENSSSCG00000030484) #32	AGR2 (ENSSSCG00000015363) #34	TSPAN13 (ENSSSCG00000015362) #33	BZW2 (ENSSSCG00000023118) #35	ANKMY2 (ENSSSCG00000015360) #36	LRRC72 (ENSSSCG00000015361)	SOSTDC1 (ENSSSCG00000021126)	ENSSSCG00000032864	CRPPA (ENSSSCG00000015358)
Chacoan peccary	MODERN SPECIES	100	IGF2BP3 (ENSCWAG00000001238)	MALSU1 (ENSCWAG00000001279)	GPNMB (ENSCWAG00000001294)	NUP42 (ENSCWAG00000001329)	KLHL7 (ENSCWAG00000001386)	HYCC1 (ENSCWAG00000001425) #8	TOMM7 (ENSCWAG00000001462) #10	IL6 (ENSCWAG00000001472) #11	RAPGEF5 (ENSCWAG00000001550) #14	CDCA7L (ENSCWAG00000001771) #15	DNAH11 (ENSCWAG00000001922) #17	SP4 (ENSCWAG00000002318) #18	SP8 (ENSCWAG00000002346) #19	ABCB5 (ENSCWAG00000002372) #20	ITGB8 (ENSCWAG00000002423) #21	MACC1 (ENSCWAG00000002457) #22	TMEM196 (ENSCWAG00000002480) #24	POLR1F (ENSCWAG00000002503) #25	FERD3L (ENSCWAG00000002512) #26	TWIST1 (ENSCWAG00000002519) #27	HDAC9 (ENSCWAG00000002543) #28	ENSCWAG00000002602 ##29	SNX13 (ENSCWAG00000002619) #30	AHR (ENSCWAG00000002645) #32	AGR3 (ENSCWAG00000002657) ##34	AGR2 (ENSCWAG00000002684) #34	TSPAN13 (ENSCWAG00000002711) #33	BZW2 (ENSCWAG00000002731) #35	ENSCWAG00000002763	ANKMY2 (ENSCWAG00000002772) #36	LRRC72 (ENSCWAG00000002793)
Artiodactyla_a	ANCESTRAL SPECIES	11	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00910000147712	ENSGT00940000160307 #28	ENSGT00950000182803.B.d.a.j ##29	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b
Artiodactyla_b	ANCESTRAL SPECIES	11	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00910000147712	ENSGT00940000160307 #28	ENSGT00950000182803.B.d.a.j ##29	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b
Cetacea	ANCESTRAL SPECIES	13	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000166333	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00910000147712	ENSGT00940000160307 #28	ENSGT00950000182803.B.d.a.j ##29	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b
Odontoceti	ANCESTRAL SPECIES	12	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000166333	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00910000147712	ENSGT01000000221772	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b
Odontoceti_a	ANCESTRAL SPECIES	13	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000166333	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00910000147712	ENSGT01000000221772	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b
Odontoceti_b	ANCESTRAL SPECIES	13	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000166333	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00910000147712	ENSGT01000000221772	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b
Vaquita	MODERN SPECIES	20	NUP42 (ENSPSNG00000009532)	KLHL7 (ENSPSNG00000009482)	HYCC1 (ENSPSNG00000009328) #8	IL6 (ENSPSNG00000009204) #11	RAPGEF5 (ENSPSNG00000008908) #14	CDCA7L (ENSPSNG00000008676) #15	DNAH11 (ENSPSNG00000007306) #17	ENSPSNG00000007110	SP4 (ENSPSNG00000007062) #18	ENSPSNG00000006887	SP8 (ENSPSNG00000006838) #19	ENSPSNG00000009873 #20	ENSPSNG00000009781 #20	ENSPSNG00000009751	ITGB8 (ENSPSNG00000009703) #21	MACC1 (ENSPSNG00000009595) #22	TMEM196 (ENSPSNG00000009438) #24	POLR1F (ENSPSNG00000009354) #25	ENSPSNG00000009323	FERD3L (ENSPSNG00000009256) #26	TWIST1 (ENSPSNG00000009224) #27	ENSPSNG00000009173	HDAC9 (ENSPSNG00000009029) #28	SNX13 (ENSPSNG00000008877) #30	AHR (ENSPSNG00000008778) #32	AGR3 (ENSPSNG00000008700) ##34	AGR2 (ENSPSNG00000008587) #34	TSPAN13 (ENSPSNG00000008556) #33	BZW2 (ENSPSNG00000008447) #35	ANKMY2 (ENSPSNG00000008375) #36	LRRC72 (ENSPSNG00000008276)
Monodontidae	ANCESTRAL SPECIES	12	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00910000147712	ENSGT01000000221772	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b
Narwhal	MODERN SPECIES	306	NUP42 (ENSMMNG00015013671)	KLHL7 (ENSMMNG00015013694)	HYCC1 (ENSMMNG00015013717) #8	ENSMMNG00015013758 #10	IL6 (ENSMMNG00015013785) #11	RAPGEF5 (ENSMMNG00015013835) #14	CDCA7L (ENSMMNG00015013916) #15	DNAH11 (ENSMMNG00015014124) #17	SP4 (ENSMMNG00015014456) #18	ENSMMNG00015014468	ENSMMNG00015014481	SP8 (ENSMMNG00015014490) #19	ENSMMNG00015014504 #20	ENSMMNG00015014524 #20	ITGB8 (ENSMMNG00015014541) #21	MACC1 (ENSMMNG00015014571) #22	TMEM196 (ENSMMNG00015014600) #24	POLR1F (ENSMMNG00015005418) #25	FERD3L (ENSMMNG00015005424) #26	TWIST1 (ENSMMNG00015005433) #27	ENSMMNG00015005446	HDAC9 (ENSMMNG00015005496) #28	ENSMMNG00015005627	SNX13 (ENSMMNG00015005684) #30	AHR (ENSMMNG00015005766) #32	AGR3 (ENSMMNG00015005889) ##34	AGR2 (ENSMMNG00015005919) #34	TSPAN13 (ENSMMNG00015005939) #33	BZW2 (ENSMMNG00015005981) #35	ANKMY2 (ENSMMNG00015006034) #36	LRRC72 (ENSMMNG00015006074)
Dolphin	MODERN SPECIES	2305															ITGB8 (ENSTTRG00000015182) #21	MACC1 (ENSTTRG00000015174) #22
Blue whale	MODERN SPECIES	20	MALSU1 (ENSBMSG00010007370)	GPNMB (ENSBMSG00010007358)	NUP42 (ENSBMSG00010007347)	KLHL7 (ENSBMSG00010007329)	HYCC1 (ENSBMSG00010007306) #8	ENSBMSG00010007284 #10	IL6 (ENSBMSG00010007260) #11	RAPGEF5 (ENSBMSG00010007194) #14	CDCA7L (ENSBMSG00010007132) #15	DNAH11 (ENSBMSG00010006886) #17	ENSBMSG00010006798	SP4 (ENSBMSG00010006784) #18	SP8 (ENSBMSG00010006762) #19	ABCB5 (ENSBMSG00010006722) #20	ITGB8 (ENSBMSG00010006675) #21	MACC1 (ENSBMSG00010006649) #22	ENSBMSG00010006634	TMEM196 (ENSBMSG00010006606) #24	POLR1F (ENSBMSG00010006586) #25	FERD3L (ENSBMSG00010006572) #26	TWIST1 (ENSBMSG00010006562) #27	ENSBMSG00010006554	HDAC9 (ENSBMSG00010006273) #28	ENSBMSG00010006178 ##29	SNX13 (ENSBMSG00010006158) #30	AHR (ENSBMSG00010006134) #32	AGR3 (ENSBMSG00010006105) ##34	AGR2 (ENSBMSG00010006058) #34	TSPAN13 (ENSBMSG00010006035) #33	BZW2 (ENSBMSG00010006018) #35	ANKMY2 (ENSBMSG00010005991) #36
Pecora	ANCESTRAL SPECIES	11	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602.j	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00910000147712	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a
Percora_a	ANCESTRAL SPECIES	11	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602.j	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00910000147712	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a
Bovidae	ANCESTRAL SPECIES	12	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602.j	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00910000147712	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a
Caprinae	ANCESTRAL SPECIES	10	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602.j	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00910000147712	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a
Rambouillet Sheep	MODERN SPECIES	20	IGF2BP3 (ENSOARG00020006907)	MALSU1 (ENSOARG00020006835)	GPNMB (ENSOARG00020006751)	NUP42 (ENSOARG00020006652)	KLHL7 (ENSOARG00020006541)	FAM126A (ENSOARG00020006243) #8	TOMM7 (ENSOARG00020006206) #10	IL6 (ENSOARG00020006183) #11	RAPGEF5 (ENSOARG00020005723) #14	CDCA7L (ENSOARG00020005494) #15	DNAH11 (ENSOARG00020003395) #17	SP4 (ENSOARG00020003087) #18	SP8 (ENSOARG00020003038) #19	ABCB5 (ENSOARG00020002948) #20	ITGB8 (ENSOARG00020002879) #21	MACC1 (ENSOARG00020002851) #22	TMEM196 (ENSOARG00020002822) #24	POLR1F (ENSOARG00020002814) #25	FERD3L (ENSOARG00020002801) #26	TWIST1 (ENSOARG00020002796) #27	ENSOARG00020002790	HDAC9 (ENSOARG00020002586) #28	PRPS1L1 (ENSOARG00020002500) #29	SNX13 (ENSOARG00020002353) #30	AHR (ENSOARG00020002260) #32	AGR3 (ENSOARG00020002223) ##34	AGR2 (ENSOARG00020002209) #34	TSPAN13 (ENSOARG00020002191) #33	BZW2 (ENSOARG00020002131) #35	ANKMY2 (ENSOARG00020002090) #36	LRRC72 (ENSOARG00020002072)
Goat	MODERN SPECIES	23	ENSCHIG00000002492	GPNMB (ENSCHIG00000022609)	NUP42 (ENSCHIG00000009608)	ENSCHIG00000026932	HYCC1 (ENSCHIG00000014509) #8	TOMM7 (ENSCHIG00000023448) #10	IL6 (ENSCHIG00000012291) #11	RAPGEF5 (ENSCHIG00000003129) #14	CDCA7L (ENSCHIG00000012867) #15	DNAH11 (ENSCHIG00000011401) #17	SP4 (ENSCHIG00000009631) #18	SP8 (ENSCHIG00000010739) #19	ABCB5 (ENSCHIG00000012373) #20	ENSCHIG00000008550	ITGB8 (ENSCHIG00000019429) #21	MACC1 (ENSCHIG00000015533) #22	TMEM196 (ENSCHIG00000024424) #24	POLR1F (ENSCHIG00000024078) #25	FERD3L (ENSCHIG00000010496) #26	ENSCHIG00000012294	HDAC9 (ENSCHIG00000025824) #28	ENSCHIG00000020379	PRPS1L1 (ENSCHIG00000008267) #29	SNX13 (ENSCHIG00000014483) #30	AHR (ENSCHIG00000019440) #32	ENSCHIG00000022015	ENSCHIG00000025779	AGR3 (ENSCHIG00000018002) ##34	AGR2 (ENSCHIG00000011890) #34	ENSCHIG00000014624 #33	BZW2 (ENSCHIG00000020691) #35
Bovinae	ANCESTRAL SPECIES	8	ENSGT00390000000118	ENSGT00510000046985.h.b.a.a.a	ENSGT00940000155602.j	ENSGT00390000011295.b #8	ENSGT00950000183087.A.a.a.a.a.a.a	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182803.B.d.a.i.a #29	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a
American bison	MODERN SPECIES	2746															ITGB8 (ENSBBBG00000014566) #21	MACC1 (ENSBBBG00000009133) #22	ENSBBBG00000008586
Bos	ANCESTRAL SPECIES	8	ENSGT00390000000118	ENSGT00510000046985.h.b.a.a.a	ENSGT00940000155602.j	ENSGT00390000011295.b #8	ENSGT00950000183087.A.a.a.a.a.a.a	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a	ENSGT00390000006412
Bos_b	ANCESTRAL SPECIES	7	ENSGT00390000000118	ENSGT00510000046985.h.b.a.a.a	ENSGT00940000155602.j	ENSGT00390000011295.b #8	ENSGT00950000183087.A.a.a.a.a.a.a	ENSGT00390000014833.c #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00940000164207	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a
Cow	MODERN SPECIES	23	NUP42 (ENSBTAG00000016014)	ENSBTAG00000049132	KLHL7 (ENSBTAG00000016010)	HYCC1 (ENSBTAG00000004575) #8	ENSBTAG00000033806	TOMM7 (ENSBTAG00000051150) #10	IL6 (ENSBTAG00000014921) #11	RAPGEF5 (ENSBTAG00000015539) #14	CDCA7L (ENSBTAG00000004976) #15	DNAH11 (ENSBTAG00000013078) #17	SP4 (ENSBTAG00000014389) #18	ENSBTAG00000045673	SP8 (ENSBTAG00000002604) #19	ABCB5 (ENSBTAG00000002595) #20	ITGB8 (ENSBTAG00000003709) #21	MACC1 (ENSBTAG00000003751) #22	TMEM196 (ENSBTAG00000044012) #24	POLR1F (ENSBTAG00000006721) #25	FERD3L (ENSBTAG00000039955) #26	TWIST1 (ENSBTAG00000046922) #27	HDAC9 (ENSBTAG00000003808) #28	PRPS1L1 (ENSBTAG00000033954) #29	SNX13 (ENSBTAG00000014074) #30	AHR (ENSBTAG00000007746) #32	ENSBTAG00000054646	AGR3 (ENSBTAG00000045578) ##34	AGR2 (ENSBTAG00000024406) #34	TSPAN13 (ENSBTAG00000012805) #33	BZW2 (ENSBTAG00000014262) #35	ANKMY2 (ENSBTAG00000010980) #36	LRRC72 (ENSBTAG00000034091)
Hybrid Bos Indicus	MODERN SPECIES	23	GPNMB (ENSBIXG00005020528)	NUP42 (ENSBIXG00005020467)	ENSBIXG00005020450	HYCC1 (ENSBIXG00005020386) #8	ENSBIXG00005020345	ENSBIXG00005003415 #10	IL6 (ENSBIXG00005003399) #11	RAPGEF5 (ENSBIXG00005003316) #14	CDCA7L (ENSBIXG00005019995) #15	DNAH11 (ENSBIXG00005005738) #17	SP4 (ENSBIXG00005003251) #18	ENSBIXG00005019802	SP8 (ENSBIXG00005003233) #19	ABCB5 (ENSBIXG00005007058) #20	ITGB8 (ENSBIXG00005019604) #21	MACC1 (ENSBIXG00005003175) #22	POLR1F (ENSBIXG00005019440) #25	FERD3L (ENSBIXG00005019410) #26	TWIST1 (ENSBIXG00005003158) #27	HDAC9 (ENSBIXG00005003141) #28	PRPS1L1 (ENSBIXG00005019014) #29	SNX13 (ENSBIXG00005018950) #30	AHR (ENSBIXG00005018791) #32	ENSBIXG00005003040	AGR3 (ENSBIXG00005018725) ##34	AGR2 (ENSBIXG00005018693) #34	TSPAN13 (ENSBIXG00005018680) #33	ENSBIXG00005018651	BZW2 (ENSBIXG00005018638) #35	ANKMY2 (ENSBIXG00005018589) #36	LRRC72 (ENSBIXG00005018544)
Bos_a	ANCESTRAL SPECIES	12	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00510000046985.h.b.a.a.a	ENSGT00940000155602.j	ENSGT00390000011295.b #8	ENSGT00950000183087.A.a.a.a.a.a.a	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a	ENSGT00390000006412
Domestic yak	MODERN SPECIES	23	ENSBGRG00000000725	HYCC1 (ENSBGRG00000000758) #8	ENSBGRG00000000814	ENSBGRG00000000842	ENSBGRG00000000852	TOMM7 (ENSBGRG00000000858) #10	IL6 (ENSBGRG00000000868) #11	RAPGEF5 (ENSBGRG00000000895) #14	CDCA7L (ENSBGRG00000000922) #15	DNAH11 (ENSBGRG00000001054) #17	SP4 (ENSBGRG00000001146) #18	ENSBGRG00000001176	SP8 (ENSBGRG00000001195) #19	ABCB5 (ENSBGRG00000001233) #20	ITGB8 (ENSBGRG00000001411) #21	MACC1 (ENSBGRG00000001496) #22	POLR1F (ENSBGRG00000001608) #25	ENSBGRG00000001639 #26	ENSBGRG00000001648 #26	TWIST1 (ENSBGRG00000001656) #27	HDAC9 (ENSBGRG00000001751) #28	ENSBGRG00000002126	PRPS1L1 (ENSBGRG00000002154) #29	SNX13 (ENSBGRG00000002167) #30	AHR (ENSBGRG00000002193) #32	AGR3 (ENSBGRG00000002262) ##34	TSPAN13 (ENSBGRG00000002298) #33	AGR2 (ENSBGRG00000002340) #34	BZW2 (ENSBGRG00000002382) #35	ANKMY2 (ENSBGRG00000002430) #36	LRRC72 (ENSBGRG00000002501)
Wild yak	MODERN SPECIES	2238														ENSBMUG00000017078	ITGB8 (ENSBMUG00000017068) #21	MACC1 (ENSBMUG00000017054) #22
Siberian musk deer	MODERN SPECIES	88	IGF2BP3 (ENSMMSG00000024420)	MALSU1 (ENSMMSG00000024421)	GPNMB (ENSMMSG00000024422)	NUP42 (ENSMMSG00000024423)	ENSMMSG00000024424	HYCC1 (ENSMMSG00000024425) #8	TOMM7 (ENSMMSG00000024427) #10	ENSMMSG00000024428 #11	RAPGEF5 (ENSMMSG00000024430) #14	CDCA7L (ENSMMSG00000024433) #15	DNAH11 (ENSMMSG00000024436) #17	SP4 (ENSMMSG00000024444) #18	SP8 (ENSMMSG00000024446) #19	ABCB5 (ENSMMSG00000024447) #20	ITGB8 (ENSMMSG00000024452) #21	MACC1 (ENSMMSG00000024454) #22	TMEM196 (ENSMMSG00000024455) #24	POLR1F (ENSMMSG00000024457) #25	FERD3L (ENSMMSG00000024458) #26	TWIST1 (ENSMMSG00000024459) #27	HDAC9 (ENSMMSG00000024464) #28	PRPS1L1 (ENSMMSG00000024467) #29	SNX13 (ENSMMSG00000024469) #30	AHR (ENSMMSG00000024470) #32	AGR3 (ENSMMSG00000024472) ##34	AGR2 (ENSMMSG00000024474) #34	TSPAN13 (ENSMMSG00000024475) #33	BZW2 (ENSMMSG00000024478) #35	ANKMY2 (ENSMMSG00000024481) #36	LRRC72 (ENSMMSG00000024485)	SOSTDC1 (ENSMMSG00000024487)
Yarkand deer	MODERN SPECIES	9	ENSCHYG00000012174	ENSCHYG00000012166	ENSCHYG00000012138	HYCC1 (ENSCHYG00000011929) #8	ENSCHYG00000011839 #10	ENSCHYG00000011799 #11	RAPGEF5 (ENSCHYG00000011187) #14	CDCA7L (ENSCHYG00000010925) #15	DNAH11 (ENSCHYG00000010690) #17	SP4 (ENSCHYG00000010584) #18	ENSCHYG00000010564	ENSCHYG00000010545	SP8 (ENSCHYG00000010508) #19	ABCB5 (ENSCHYG00000010073) #20	ITGB8 (ENSCHYG00000009946) #21	MACC1 (ENSCHYG00000009890) #22	ENSCHYG00000009866	TMEM196 (ENSCHYG00000009756) #24	POLR1F (ENSCHYG00000009700) #25	FERD3L (ENSCHYG00000009629) #26	ENSCHYG00000009595	ENSCHYG00000009538	HDAC9 (ENSCHYG00000008905) #28	PRPS1L1 (ENSCHYG00000008702) #29	SNX13 (ENSCHYG00000008391) #30	AHR (ENSCHYG00000008314) #32	ENSCHYG00000008294	AGR3 (ENSCHYG00000008239) ##34	AGR2 (ENSCHYG00000008193) #34	TSPAN13 (ENSCHYG00000008162) #33	ENSCHYG00000008119 #35
Camelidae	ANCESTRAL SPECIES	2	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00910000147712	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a
Arabian camel	MODERN SPECIES	33	IGF2BP3 (ENSCDRG00005000158)	MALSU1 (ENSCDRG00005000140)	GPNMB (ENSCDRG00005000107)	KLHL7 (ENSCDRG00005007279)	ENSCDRG00005007248	HYCC1 (ENSCDRG00005007124) #8	IL6 (ENSCDRG00005006980) #11	TOMM7 (ENSCDRG00005006889) #10	RAPGEF5 (ENSCDRG00005006590) #14	CDCA7L (ENSCDRG00005006381) #15	DNAH11 (ENSCDRG00005006248) #17	SP4 (ENSCDRG00005006199) #18	SP8 (ENSCDRG00005006175) #19	ABCB5 (ENSCDRG00005006056) #20	ITGB8 (ENSCDRG00005006022) #21	MACC1 (ENSCDRG00005005995) #22	TMEM196 (ENSCDRG00005005947) #24	POLR1F (ENSCDRG00005005934) #25	ENSCDRG00005005921	FERD3L (ENSCDRG00005005910) #26	TWIST1 (ENSCDRG00005005895) #27	ENSCDRG00005005889	HDAC9 (ENSCDRG00005005657) #28	PRPS1L1 (ENSCDRG00005005612) #29	SNX13 (ENSCDRG00005005525) #30	AHR (ENSCDRG00005005491) #32	AGR3 (ENSCDRG00005005423) ##34	AGR2 (ENSCDRG00005005382) #34	TSPAN13 (ENSCDRG00005005346) #33	BZW2 (ENSCDRG00005005277) #35	ANKMY2 (ENSCDRG00005005234) #36
Alpaca	MODERN SPECIES	991											CDCA7L (ENSVPAG00000002091) #15	DNAH11 (ENSVPAG00000002089) #17	SP8 (ENSVPAG00000002087) #19	ABCB5 (ENSVPAG00000002086) #20	ITGB8 (ENSVPAG00000002085) #21	MACC1 (ENSVPAG00000002084) #22	TMEM196 (ENSVPAG00000002082) #24	POLR1F (ENSVPAG00000002079) #25
Laurasiatheria_b	ANCESTRAL SPECIES	14	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00940000164650 #9	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00910000147712	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a
Carnivora	ANCESTRAL SPECIES	15	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00910000147712	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a	ENSGT00910000147441
Caniformia	ANCESTRAL SPECIES	11	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00910000147712	ENSGT00940000160307 #28	ENSGT00950000182803.B.d.a.i.a #29	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b
Caniformia_b	ANCESTRAL SPECIES	9	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00910000147712	ENSGT00940000160307 #28	ENSGT00950000182803.B.d.a.i.a #29	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a
Ursidae	ANCESTRAL SPECIES	12	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B.f	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00910000147712	ENSGT01020000230346.C.f	ENSGT00940000160307 #28	ENSGT00950000182803.B.d.a.i.a #29	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.b.t #34	ENSGT00940000157010 #33	ENSGT00390000012561.a.k #35	ENSGT00390000016820 #36
Ursus	ANCESTRAL SPECIES	31	ENSGT00390000015035	ENSGT00950000183188.B.f	ENSGT00940000165902.c	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00910000147712	ENSGT01020000230346.C.f	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.b.t #34	ENSGT00940000157010 #33	ENSGT00390000012561.a.k #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a
American black bear	MODERN SPECIES	2192															ITGB8 (ENSUAMG00000001425) #21	MACC1 (ENSUAMG00000001498) #22
Polar bear	MODERN SPECIES	133	MALSU1 (ENSUMAG00000000343)	GPNMB (ENSUMAG00000000319)	ENSUMAG00000000307	NUP42 (ENSUMAG00000000302)	KLHL7 (ENSUMAG00000000283)	HYCC1 (ENSUMAG00000000269) #8	ENSUMAG00000000168 #10	IL6 (ENSUMAG00000000079) #11	RAPGEF5 (ENSUMAG00000022363) #14	CDCA7L (ENSUMAG00000022358) #15	DNAH11 (ENSUMAG00000022264) #17	SP4 (ENSUMAG00000022248) #18	ENSUMAG00000022244	ABCB5 (ENSUMAG00000022237) #20	ITGB8 (ENSUMAG00000022227) #21	MACC1 (ENSUMAG00000022210) #22	ENSUMAG00000022206	POLR1F (ENSUMAG00000022203) #25	FERD3L (ENSUMAG00000022200) #26	ENSUMAG00000022199 #27	ENSUMAG00000022197	ENSUMAG00000022196	ENSUMAG00000022191	HDAC9 (ENSUMAG00000022181) #28	SNX13 (ENSUMAG00000022159) #30	AHR (ENSUMAG00000022084) #32	AGR2 (ENSUMAG00000022071) #34	TSPAN13 (ENSUMAG00000022069) #33	BZW2 (ENSUMAG00000022044) #35	ANKMY2 (ENSUMAG00000022038) #36	LRRC72 (ENSUMAG00000022035)
Giant Panda	MODERN SPECIES		MALSU1 (ENSAMEG00000003483)	IGF2BP3 (ENSAMEG00000003485)	GPNMB (ENSAMEG00000003423)	NUP42 (ENSAMEG00000003404)	KLHL7 (ENSAMEG00000003365)	HYCC1 (ENSAMEG00000003342) #8	IL6 (ENSAMEG00000003313) #11	ENSAMEG00000030960 #10	RAPGEF5 (ENSAMEG00000004037) #14	CDCA7L (ENSAMEG00000004021) #15	DNAH11 (ENSAMEG00000003851) #17	SP4 (ENSAMEG00000016154) #18	ENSAMEG00000031017	ABCB5 (ENSAMEG00000008608) #20	ITGB8 (ENSAMEG00000008573) #21	MACC1 (ENSAMEG00000008564) #22	TMEM196 (ENSAMEG00000029520) #24	POLR1F (ENSAMEG00000008558) #25	FERD3L (ENSAMEG00000019030) #26	ENSAMEG00000029364	ENSAMEG00000024869	HDAC9 (ENSAMEG00000008517) #28	PRPS1L1 (ENSAMEG00000018989) #29	SNX13 (ENSAMEG00000010639) #30	AHR (ENSAMEG00000010559) #32	AGR2 (ENSAMEG00000010541) #34	TSPAN13 (ENSAMEG00000010524) #33	ENSAMEG00000010473 #35	ANKMY2 (ENSAMEG00000010451) #36	LRRC72 (ENSAMEG00000010446)	SOSTDC1 (ENSAMEG00000025181)
Mustelinae	ANCESTRAL SPECIES	9	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00910000147712	ENSGT00940000160307 #28	ENSGT00950000182803.B.d.a.i.a #29	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a
Ferret	MODERN SPECIES	171	MALSU1 (ENSMPUG00000013534)	GPNMB (ENSMPUG00000013540)	NUP42 (ENSMPUG00000013548)	KLHL7 (ENSMPUG00000013580)	HYCC1 (ENSMPUG00000013583) #8	TOMM7 (ENSMPUG00000013589) #10	IL6 (ENSMPUG00000013592) #11	RAPGEF5 (ENSMPUG00000013597) #14	CDCA7L (ENSMPUG00000013603) #15	DNAH11 (ENSMPUG00000013607) #17	SP4 (ENSMPUG00000013911) #18	ENSMPUG00000013913	SP8 (ENSMPUG00000013919) #19	ABCB5 (ENSMPUG00000013926) #20	ITGB8 (ENSMPUG00000013932) #21	MACC1 (ENSMPUG00000013939) #22	TMEM196 (ENSMPUG00000013945) #24	POLR1F (ENSMPUG00000013948) #25	HDAC9 (ENSMPUG00000013952) #28	ENSMPUG00000013956	PRPS1L1 (ENSMPUG00000019297) #29	SNX13 (ENSMPUG00000013958) #30	ENSMPUG00000019299	AHR (ENSMPUG00000013964) #32	ENSMPUG00000013969	ENSMPUG00000013972	AGR2 (ENSMPUG00000013980) #34	TSPAN13 (ENSMPUG00000013982) #33	BZW2 (ENSMPUG00000014004) #35	ANKMY2 (ENSMPUG00000014010) #36	ENSMPUG00000014014 #37
American mink	MODERN SPECIES	24	MALSU1 (ENSNVIG00000013104)	GPNMB (ENSNVIG00000013107)	NUP42 (ENSNVIG00000013146)	KLHL7 (ENSNVIG00000013165)	HYCC1 (ENSNVIG00000013205) #8	ENSNVIG00000013324	IL6 (ENSNVIG00000013327) #11	RAPGEF5 (ENSNVIG00000013339) #14	CDCA7L (ENSNVIG00000013461) #15	DNAH11 (ENSNVIG00000013532) #17	SP4 (ENSNVIG00000013987) #18	ENSNVIG00000014010	SP8 (ENSNVIG00000014018) #19	ABCB5 (ENSNVIG00000014039) #20	ITGB8 (ENSNVIG00000014094) #21	MACC1 (ENSNVIG00000014137) #22	TMEM196 (ENSNVIG00000014172) #24	POLR1F (ENSNVIG00000014208) #25	FERD3L (ENSNVIG00000014221) #26	TWIST1 (ENSNVIG00000014227) #27	ENSNVIG00000014234	HDAC9 (ENSNVIG00000014244) #28	PRPS1L1 (ENSNVIG00000014716) #29	SNX13 (ENSNVIG00000014729) #30	AHR (ENSNVIG00000014868) #32	ENSNVIG00000014908	AGR2 (ENSNVIG00000014918) #34	TSN13 (ENSNVIG00000014934) #33	BZW2 (ENSNVIG00000014944) #35	ANKMY2 (ENSNVIG00000015020) #36	LRRC72 (ENSNVIG00000015048)
Canidae	ANCESTRAL SPECIES	22	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00990000204321.a	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182803.B.d.a.i.a #29	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a	ENSGT00910000147441
Canis_lupus	ANCESTRAL SPECIES	24	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00990000204321.a	ENSGT00390000000076.i	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a	ENSGT00910000147441
Dog	MODERN SPECIES	5	KLHL7 (ENSCAFG00845009174)	ENSCAFG00845009158	ENSCAFG00845009143	FAM126A (ENSCAFG00845008950) #8	TOMM7 (ENSCAFG00845008876) #10	IL6 (ENSCAFG00845008825) #11	ENSCAFG00845008800	RAPGEF5 (ENSCAFG00845008384) #14	CDCA7L (ENSCAFG00845008168) #15	DNAH11 (ENSCAFG00845007920) #17	SP4 (ENSCAFG00845007811) #18	SP8 (ENSCAFG00845007758) #19	ABCB5 (ENSCAFG00845007641) #20	ENSCAFG00845007578	ITGB8 (ENSCAFG00845007494) #21	MACC1 (ENSCAFG00845007266) #22	TMEM196 (ENSCAFG00845007184) #24	POLR1F (ENSCAFG00845007146) #25	FERD3L (ENSCAFG00845007118) #26	TWIST1 (ENSCAFG00845007076) #27	HDAC9 (ENSCAFG00845006703) #28	PRPS1L1 (ENSCAFG00845006516) #29	SNX13 (ENSCAFG00845006012) #30	ENSCAFG00845005897	AHR (ENSCAFG00845005867) #32	AGR2 (ENSCAFG00845005787) #34	TSPAN13 (ENSCAFG00845005750) #33	BZW2 (ENSCAFG00845005705) #35	ANKMY2 (ENSCAFG00845005664) #36	LRRC72 (ENSCAFG00845005626)	SOSTDC1 (ENSCAFG00845005605)
Dingo	MODERN SPECIES	288	GPNMB (ENSCAFG00020002698)	NUP42 (ENSCAFG00020002692)	KLHL7 (ENSCAFG00020002690)	ENSCAFG00020002686	ENSCAFG00020002684	ENSCAFG00020002679 #8	ENSCAFG00020002667 #10	IL6 (ENSCAFG00020002653) #11	RAPGEF5 (ENSCAFG00020002605) #14	CDCA7L (ENSCAFG00020002598) #15	DNAH11 (ENSCAFG00020002292) #17	SP4 (ENSCAFG00020002253) #18	ABCB5 (ENSCAFG00020002187) #20	ENSCAFG00020002172	ITGB8 (ENSCAFG00020002163) #21	MACC1 (ENSCAFG00020002157) #22	ENSCAFG00020002143	POLR1F (ENSCAFG00020002140) #25	FERD3L (ENSCAFG00020002139) #26	TWIST1 (ENSCAFG00020002135) #27	HDAC9 (ENSCAFG00020001908) #28	PRPS1L1 (ENSCAFG00020001874) #29	SNX13 (ENSCAFG00020001653) #30	AHR (ENSCAFG00020001575) #32	AGR2 (ENSCAFG00020001560) #34	TSPAN13 (ENSCAFG00020001556) #33	BZW2 (ENSCAFG00020001541) #35	ANKMY2 (ENSCAFG00020001533) #36	LRRC72 (ENSCAFG00020001514)	SOSTDC1 (ENSCAFG00020001510)	ENSCAFG00020001504
Red fox	MODERN SPECIES	12	TRA2A (ENSVVUG00000001045)	IGF2BP3 (ENSVVUG00000001063)	GPNMB (ENSVVUG00000001105)	KLHL7 (ENSVVUG00000001128)	ENSVVUG00000001178	FAM126A (ENSVVUG00000001204) #8	ENSVVUG00000001303 #10	IL6 (ENSVVUG00000001319) #11	RAPGEF5 (ENSVVUG00000001380) #14	CDCA7L (ENSVVUG00000001402) #15	DNAH11 (ENSVVUG00000002278) #17	SP4 (ENSVVUG00000008046) #18	SP8 (ENSVVUG00000008108) #19	ABCB5 (ENSVVUG00000008164) #20	ITGB8 (ENSVVUG00000008336) #21	MACC1 (ENSVVUG00000008370) #22	TMEM196 (ENSVVUG00000008383)	TWISTNB (ENSVVUG00000008386) #25	FERD3L (ENSVVUG00000008413) #26	ENSVVUG00000008415	HDAC9 (ENSVVUG00000008429) #28	ENSVVUG00000008515	PRPS1L1 (ENSVVUG00000008539) #29	SNX13 (ENSVVUG00000008580) #30	ENSVVUG00000008596	AHR (ENSVVUG00000008606) #32	AGR2 (ENSVVUG00000008636) #34	TSPAN13 (ENSVVUG00000008663) #33	BZW2 (ENSVVUG00000008686) #35	ANKMY2 (ENSVVUG00000008716) #36	LRRC72 (ENSVVUG00000008740)
Felidae	ANCESTRAL SPECIES	13	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00910000147712	ENSGT00990000212408	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010.c #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a
Panthera	ANCESTRAL SPECIES	1	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00910000147712	ENSGT00990000212408	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010.c #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a
Tiger	MODERN SPECIES	293	ENSPTIG00000005612	IGF2BP3 (ENSPTIG00000006021)	MALSU1 (ENSPTIG00000007567)	GPNMB (ENSPTIG00000008247)	NUP42 (ENSPTIG00000009583)	KLHL7 (ENSPTIG00000010367)	HYCC1 (ENSPTIG00000015096) #8	TOMM7 (ENSPTIG00000015954) #10	IL6 (ENSPTIG00000016661) #11	RAPGEF5 (ENSPTIG00000018422) #14	CDCA7L (ENSPTIG00000006990) #15	ENSPTIG00000007171	SP4 (ENSPTIG00000016118) #18	ABCB5 (ENSPTIG00000016699) #20	ITGB8 (ENSPTIG00000018464) #21	MACC1 (ENSPTIG00000019121) #22	TMEM196 (ENSPTIG00000019937) #24	POLR1F (ENSPTIG00000021539) #25	FERD3L (ENSPTIG00000007267) #26	HDAC9 (ENSPTIG00000007997) #28	PRPS1L1 (ENSPTIG00000007401) #29	SNX13 (ENSPTIG00000021589) #30	AHR (ENSPTIG00000008421) #32	AGR2 (ENSPTIG00000010330) #34	TSPAN13 (ENSPTIG00000012079) #33	BZW2 (ENSPTIG00000013171) #35	ANKMY2 (ENSPTIG00000020367) #36	LRRC72 (ENSPTIG00000006972)	SOSTDC1 (ENSPTIG00000007605)	CRPPA (ENSPTIG00000009298)	MEOX2 (ENSPTIG00000010758)
Panthera_a	ANCESTRAL SPECIES		ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00910000147712	ENSGT00990000212408	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010.c #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a
lion	MODERN SPECIES	2	MALSU1 (ENSPLOG00000006242)	GPNMB (ENSPLOG00000006176)	NUP42 (ENSPLOG00000006139)	KLHL7 (ENSPLOG00000006071)	HYCC1 (ENSPLOG00000005987) #8	TOMM7 (ENSPLOG00000005923) #10	IL6 (ENSPLOG00000005885) #11	RAPGEF5 (ENSPLOG00000005752) #14	CDCA7L (ENSPLOG00000005663) #15	ENSPLOG00000005631	DNAH11 (ENSPLOG00000005484) #17	SP4 (ENSPLOG00000005405) #18	SP8 (ENSPLOG00000005374) #19	ABCB5 (ENSPLOG00000005325) #20	ITGB8 (ENSPLOG00000005294) #21	MACC1 (ENSPLOG00000005282) #22	TMEM196 (ENSPLOG00000005271) #24	POLR1F (ENSPLOG00000005258) #25	FERD3L (ENSPLOG00000005253) #26	TWIST1 (ENSPLOG00000005248) #27	ENSPLOG00000005242	ENSPLOG00000005234	HDAC9 (ENSPLOG00000005066) #28	PRPS1L1 (ENSPLOG00000004870) #29	SNX13 (ENSPLOG00000004829) #30	AHR (ENSPLOG00000004789) #32	AGR2 (ENSPLOG00000004751) #34	ENSPLOG00000004728 #33	BZW2 (ENSPLOG00000004703) #35	ANKMY2 (ENSPLOG00000021257) #36	LRRC72 (ENSPLOG00000021220)
leopard	MODERN SPECIES	9	MALSU1 (ENSPPRG00000019365)	GPNMB (ENSPPRG00000022277)	NUP42 (ENSPPRG00000024188)	KLHL7 (ENSPPRG00000023124)	HYCC1 (ENSPPRG00000000882) #8	TOMM7 (ENSPPRG00000001184) #10	IL6 (ENSPPRG00000001365) #11	ENSPPRG00000002217 #14	ENSPPRG00000004234 #14	CDCA7L (ENSPPRG00000005070) #15	DNAH11 (ENSPPRG00000001981) #17	SP4 (ENSPPRG00000002366) #18	SP8 (ENSPPRG00000002787) #19	ABCB5 (ENSPPRG00000003288) #20	ITGB8 (ENSPPRG00000003937) #21	MACC1 (ENSPPRG00000004920) #22	TMEM196 (ENSPPRG00000005829) #24	POLR1F (ENSPPRG00000005877) #25	FERD3L (ENSPPRG00000021108) #26	TWIST1 (ENSPPRG00000021134) #27	ENSPPRG00000008154	HDAC9 (ENSPPRG00000016351) #28	PRPS1L1 (ENSPPRG00000021597) #29	SNX13 (ENSPPRG00000024953) #30	AHR (ENSPPRG00000024905) #32	AGR2 (ENSPPRG00000024722) #34	TSPAN13 (ENSPPRG00000024563) #33	BZW2 (ENSPPRG00000023909) #35	ANKMY2 (ENSPPRG00000023052) #36	LRRC72 (ENSPPRG00000022927)	SOSTDC1 (ENSPPRG00000022631)
Cat	MODERN SPECIES	1	IGF2BP3 (ENSFCAG00000030786)	MALSU1 (ENSFCAG00000029829)	GPNMB (ENSFCAG00000026148)	KLHL7 (ENSFCAG00000005805)	HYCC1 (ENSFCAG00000011016) #8	TOMM7 (ENSFCAG00000032204) #10	IL6 (ENSFCAG00000009165) #11	ENSFCAG00000047404	RAPGEF5 (ENSFCAG00000046261) #14	CDCA7L (ENSFCAG00000014417) #15	DNAH11 (ENSFCAG00000014410) #17	SP4 (ENSFCAG00000028758) #18	SP8 (ENSFCAG00000044413) #19	ABCB5 (ENSFCAG00000022127) #20	ITGB8 (ENSFCAG00000006893) #21	MACC1 (ENSFCAG00000022683) #22	TMEM196 (ENSFCAG00000036423) #24	POLR1F (ENSFCAG00000025987) #25	FERD3L (ENSFCAG00000010289) #26	TWIST1 (ENSFCAG00000039287) #27	ENSFCAG00000050205	ENSFCAG00000037065	HDAC9 (ENSFCAG00000025113) #28	ENSFCAG00000048315 ##29	SNX13 (ENSFCAG00000024117) #30	AHR (ENSFCAG00000005018) #32	AGR2 (ENSFCAG00000005428) #34	TSPAN13 (ENSFCAG00000030597) #33	BZW2 (ENSFCAG00000009109) #35	ANKMY2 (ENSFCAG00000009108) #36	LRRC72 (ENSFCAG00000022872)
Laurasiatheria_c	ANCESTRAL SPECIES	13	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00940000164650 #9	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00910000147712	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a
Equus	ANCESTRAL SPECIES	13	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00940000164650 #9	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000162831 #27	ENSGT00910000147712	ENSGT00940000160307 #28	ENSGT00550000074801.g.a.s	ENSGT00950000182803.B.d.a.j ##29	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36
Donkey	MODERN SPECIES		MALSU1 (ENSEASG00005021994)	GPNMB (ENSEASG00005021992)	NUP42 (ENSEASG00005035025)	KLHL7 (ENSEASG00005021979)	HYCC1 (ENSEASG00005021974) #8	TOMM7 (ENSEASG00005036304) #10	IL6 (ENSEASG00005021965) #11	ENSEASG00005021963 #14	ENSEASG00005035034 #14	CDCA7L (ENSEASG00005021958) #15	DNAH11 (ENSEASG00005021871) #17	SP4 (ENSEASG00005021731) #18	SP8 (ENSEASG00005021726) #19	ABCB5 (ENSEASG00005021722) #20	ITGB8 (ENSEASG00005021716) #21	MACC1 (ENSEASG00005021710) #22	TMEM196 (ENSEASG00005021706) #24	POLR1F (ENSEASG00005021702) #25	TWIST1 (ENSEASG00005021693) #27	ENSEASG00005021690	HDAC9 (ENSEASG00005021674) #28	ENSEASG00005030024	SNX13 (ENSEASG00005021639) #30	AHR (ENSEASG00005021632) #32	AGR3 (ENSEASG00005021631) ##34	AGR2 (ENSEASG00005038028) #34	TSPAN13 (ENSEASG00005021628) #33	ENSEASG00005021624 #35	ANKMY2 (ENSEASG00005021618) #36	LRRC72 (ENSEASG00005036050)	SOSTDC1 (ENSEASG00005038104)
Horse	MODERN SPECIES	25	HYCC1 (ENSECAG00000023479) #8	ENSECAG00000043335 #9	IL6 (ENSECAG00000016482) #11	ENSECAG00000055291	TOMM7 (ENSECAG00000021807) #10	RAPGEF5 (ENSECAG00000000395) #14	CDCA7L (ENSECAG00000022400) #15	DNAH11 (ENSECAG00000004819) #17	SP4 (ENSECAG00000023324) #18	ENSECAG00000043394	SP8 (ENSECAG00000040341) #19	ENSECAG00000054779 #20	ABCB5 (ENSECAG00000011338)	ENSECAG00000048959	ITGB8 (ENSECAG00000019215) #21	MACC1 (ENSECAG00000017364) #22	TMEM196 (ENSECAG00000015956)	POLR1F (ENSECAG00000014563) #25	ENSECAG00000029412	ENSECAG00000059503	TWIST1 (ENSECAG00000033207) #27	ENSECAG00000018100	ENSECAG00000002478 ##29	HDAC9 (ENSECAG00000018816) #28	SNX13 (ENSECAG00000021498) #30	AHR (ENSECAG00000013393) #32	AGR3 (ENSECAG00000012283) ##34	AGR2 (ENSECAG00000043283) #34	TSPAN13 (ENSECAG00000010623) #33	BZW2 (ENSECAG00000022038) #35	ANKMY2 (ENSECAG00000014046) #36
Chiroptera	ANCESTRAL SPECIES	24	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00940000164650 #9	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880.a #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a	ENSGT00390000006412
Microchiroptera	ANCESTRAL SPECIES	24	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00940000164650 #9	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880.a #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a
Greater horseshoe bat	MODERN SPECIES	12	IGF2BP3 (ENSRFEG00010009439)	MALSU1 (ENSRFEG00010009519)	GPNMB (ENSRFEG00010009561)	KLHL7 (ENSRFEG00010009639)	HYCC1 (ENSRFEG00010009822) #8	ENSRFEG00010009909	TOMM7 (ENSRFEG00010009939) #10	IL6 (ENSRFEG00010009963) #11	RAPGEF5 (ENSRFEG00010010064) #14	CDCA7L (ENSRFEG00010010429) #15	DNAH11 (ENSRFEG00010010810) #17	SP4 (ENSRFEG00010014331) #18	SP8 (ENSRFEG00010014425) #19	ABCB5 (ENSRFEG00010014506) #20	ITGB8 (ENSRFEG00010015208) #21	MACC1 (ENSRFEG00010015272) #22	TMEM196 (ENSRFEG00010015350) #24	POLR1F (ENSRFEG00010015486) #25	FERD3L (ENSRFEG00010015525) #26	TWIST1 (ENSRFEG00010015542) #27	HDAC9 (ENSRFEG00010015571) #28	PRPS1L1 (ENSRFEG00010015977) #29	SNX13 (ENSRFEG00010016005) #30	AHR (ENSRFEG00010016099) #32	AGR3 (ENSRFEG00010016282) ##34	AGR2 (ENSRFEG00010016349) #34	TSPAN13 (ENSRFEG00010016399) #33	BZW2 (ENSRFEG00010016448) #35	ANKMY2 (ENSRFEG00010016575) #36	LRRC72 (ENSRFEG00010016613)	SOSTDC1 (ENSRFEG00010016782)
Microbat	MODERN SPECIES	952											ENSMLUG00000013142 #17	SP4 (ENSMLUG00000013137) #18	ENSMLUG00000027283	ABCB5 (ENSMLUG00000002224) #20	ITGB8 (ENSMLUG00000008896) #21	MACC1 (ENSMLUG00000008877) #22	ENSMLUG00000008871	POLR1F (ENSMLUG00000008848) #25	ENSMLUG00000006930 #26	TWIST1 (ENSMLUG00000007047) #27	HDAC9 (ENSMLUG00000006585) #28	SNX13 (ENSMLUG00000014405) #30	AHR (ENSMLUG00000000097) #32	ENSMLUG00000014948 #34	TSPAN13 (ENSMLUG00000014946) #33	BZW2 (ENSMLUG00000014943) #35	ANKMY2 (ENSMLUG00000014935) #36	LRRC72 (ENSMLUG00000014931)	SOSTDC1 (ENSMLUG00000014930)	CRPPA (ENSMLUG00000027807)	MEOX2 (ENSMLUG00000022218)
Megabat	MODERN SPECIES	7837																MACC1 (ENSPVAG00000009971) #22
Atlantogenata	ANCESTRAL SPECIES	7	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000164009 #37	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a
Xenarthra	ANCESTRAL SPECIES																	ENSGT00390000013151.a.b #22
Sloth	MODERN SPECIES	6670																MACC1 (ENSCHOG00000002055) #22
Afrotheria	ANCESTRAL SPECIES	5	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000164009 #37	ENSGT00390000014900.b.b.a	ENSGT00390000006412	ENSGT00940000154018.b
Afrotheria_a	ANCESTRAL SPECIES	5	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000161340 #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000164009 #37	ENSGT00390000014900.b.b.a	ENSGT00390000006412	ENSGT00940000154018.b
Elephant	MODERN SPECIES	428	IGF2BP3 (ENSLAFG00000011924)	MALSU1 (ENSLAFG00000011921)	GPNMB (ENSLAFG00000022142)	NUP42 (ENSLAFG00000007523)	KLHL7 (ENSLAFG00000007517)	HYCC1 (ENSLAFG00000007515) #8	TOMM7 (ENSLAFG00000027187) #10	IL6 (ENSLAFG00000015573) #11	RAPGEF5 (ENSLAFG00000014919) #14	CDCA7L (ENSLAFG00000017695) #15	DNAH11 (ENSLAFG00000017652) #17	SP4 (ENSLAFG00000022398) #18	ENSLAFG00000026096	ABCB5 (ENSLAFG00000011833) #20	ITGB8 (ENSLAFG00000001226) #21	MACC1 (ENSLAFG00000004099) #22	ENSLAFG00000015261	POLR1F (ENSLAFG00000008755) #25	FERD3L (ENSLAFG00000012782) #26	HDAC9 (ENSLAFG00000015187) #28	ENSLAFG00000026856 #29	SNX13 (ENSLAFG00000010912) #30	AHR (ENSLAFG00000015328) #32	AGR3 (ENSLAFG00000005961) ##34	AGR2 (ENSLAFG00000005959) #34	TSPAN13 (ENSLAFG00000005956) #33	BZW2 (ENSLAFG00000003942) #35	ANKMY2 (ENSLAFG00000003941) #36	ENSLAFG00000003939 #37	SOSTDC1 (ENSLAFG00000028775)	CRPPA (ENSLAFG00000020849)
Hyrax	MODERN SPECIES	6255																MACC1 (ENSPCAG00000010456) #22
Tenrec	MODERN SPECIES	7440																MACC1 (ENSETEG00000002394) #22
Marsupialia	ANCESTRAL SPECIES	4	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00940000164650.b #9	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00940000176107	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b
Marsupialia_b	ANCESTRAL SPECIES	10	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00940000164650.b #9	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000176107	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a
Diprotodontia	ANCESTRAL SPECIES	18	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00940000164650.b #9	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000176107	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a
Diprotodontia_a	ANCESTRAL SPECIES	20	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00940000164650.b #9	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000176107	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000153289.a.b	ENSGT00390000014900.b.b.a
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1036	ENSVURG00010020085	ENSVURG00010020101	ENSVURG00010020118	ENSVURG00010020126	ENSVURG00010020134	ENSVURG00010020142	ENSVURG00010020152 #8	ENSVURG00010020166 #9	ENSVURG00010020187 #10	ENSVURG00010020191 #11	ENSVURG00010020207 #14	ENSVURG00010020237 #15	ENSVURG00010020526 #17	ENSVURG00010021047 #18	ENSVURG00010021058 #21	ENSVURG00010021067 #22	ENSVURG00010021074	ENSVURG00010021077 #25	FERD3L (ENSVURG00010021081) #26	TWIST1 (ENSVURG00010021085) #27	HDAC9 (ENSVURG00010021093) #28	SNX13 (ENSVURG00010021118) #30	AHR (ENSVURG00010021144) #32	AGR3 (ENSVURG00010021154) ##34	AGR2 (ENSVURG00010021158) #34	TSPAN13 (ENSVURG00010021163) #33	BZW2 (ENSVURG00010021169) #35	ANKMY2 (ENSVURG00010021174) #36	SOSTDC1 (ENSVURG00010021178)	CRPPA (ENSVURG00010021184)	MEOX2 (ENSVURG00010021194)
Common wonbat	MODERN SPECIES	1036	ENSVURG00010001736	ENSVURG00010001806	ENSVURG00010001822	ENSVURG00010001853	ENSVURG00010001941	ENSVURG00010002036 #8	ENSVURG00010002069 #9	ENSVURG00010002145 #10	ENSVURG00010002178 #11	ENSVURG00010002211 #14	ENSVURG00010002266 #15	ENSVURG00010002508 #17	ENSVURG00010004193 #18	SP8 (ENSVURG00010004207) #19	ENSVURG00010004234 #21	ENSVURG00010004276 #22	ENSVURG00010004300	ENSVURG00010004313	ENSVURG00010004342 #25
koala	MODERN SPECIES	50	IGF2BP3 (ENSPCIG00000007929)	MALSU1 (ENSPCIG00000007943)	GPNMB (ENSPCIG00000007948)	NUP42 (ENSPCIG00000007959)	KLHL7 (ENSPCIG00000007966)	HYCC1 (ENSPCIG00000007972) #8	ENSPCIG00000033766 #9	ENSPCIG00000019076 #10	ENSPCIG00000033317 #11	RAPGEF5 (ENSPCIG00000013311) #14	CDCA7L (ENSPCIG00000007736) #15	DNAH11 (ENSPCIG00000007819) #17	SP4 (ENSPCIG00000008061) #18	SP8 (ENSPCIG00000037309) #19	ITGB8 (ENSPCIG00000025095) #21	MACC1 (ENSPCIG00000025096) #22
Wallaby	MODERN SPECIES	8978																MACC1 (ENSMEUG00000008248) #22
Tasmanian devil	MODERN SPECIES	4	IGF2BP3 (ENSSHAG00000007163)	MALSU1 (ENSSHAG00000032001)	GPNMB (ENSSHAG00000007975)	ENSSHAG00000024414	KLHL7 (ENSSHAG00000029498)	HYCC1 (ENSSHAG00000010233) #8	ENSSHAG00000030782 #9	ENSSHAG00000010703 #9	TOMM7 (ENSSHAG00000030253) #10	ENSSHAG00000011246 #11	RAPGEF5 (ENSSHAG00000013368) #14	DNAH11 (ENSSHAG00000015005) #17	CDCA7L (ENSSHAG00000014132) #15	SP8 (ENSSHAG00000023840) #19	ITGB8 (ENSSHAG00000000868) #21	MACC1 (ENSSHAG00000006812) #22	ENSSHAG00000031277	POLR1F (ENSSHAG00000024738) #25	FERD3L (ENSSHAG00000024736) #26	TWIST1 (ENSSHAG00000022750) #27	HDAC9 (ENSSHAG00000022066) #28	SNX13 (ENSSHAG00000005996) #30	ENSSHAG00000021588 #32	AGR3 (ENSSHAG00000000417) ##34	AGR2 (ENSSHAG00000002137) #34	TSPAN13 (ENSSHAG00000031045) #33	BZW2 (ENSSHAG00000004361) #35	ANKMY2 (ENSSHAG00000005439) #36	ENSSHAG00000005836	SOSTDC1 (ENSSHAG00000028251)	CRPPA (ENSSHAG00000026457)
Opossum	MODERN SPECIES	7	ENSMODG00000001030	GPNMB (ENSMODG00000001046)	NUP42 (ENSMODG00000025473)	KLHL7 (ENSMODG00000001075)	HYCC1 (ENSMODG00000001096) #8	ENSMODG00000001253 #9	ENSMODG00000023928	ENSMODG00000001265 #11	ENSMODG00000001277 #14	CDCA7L (ENSMODG00000001287) #15	DNAH11 (ENSMODG00000001356) #17	SP4 (ENSMODG00000001368) #18	ENSMODG00000046311	SP8 (ENSMODG00000001375) #19	ITGB8 (ENSMODG00000001388) #21	MACC1 (ENSMODG00000001394) #22	TMEM196 (ENSMODG00000001396) #24	ENSMODG00000001402 #25	FERD3L (ENSMODG00000001405) #26	TWIST1 (ENSMODG00000023924) #27	HDAC9 (ENSMODG00000001442) #28	SNX13 (ENSMODG00000001464) #30	ENSMODG00000001503	AHR (ENSMODG00000001528) #32	AGR3 (ENSMODG00000043280) ##34	ENSMODG00000001544 #34	ENSMODG00000001551 #33	BZW2 (ENSMODG00000001582) #35	ANKMY2 (ENSMODG00000001600) #36	ENSMODG00000027605	SOSTDC1 (ENSMODG00000001607)
Platypus	MODERN SPECIES	19	TRA2A (ENSOANG00000014202)	IGF2BP3 (ENSOANG00000014203)	MALSU1 (ENSOANG00000037543)	GPNMB (ENSOANG00000014205)	NUP42 (ENSOANG00000014206)	KLHL7 (ENSOANG00000014207)	HYCC1 (ENSOANG00000014208) #8	TOMM7 (ENSOANG00000014210) #10	ENSOANG00000022300 #11	RAPGEF5 (ENSOANG00000011808) #14	CDCA7L (ENSOANG00000011809) #15	DNAH11 (ENSOANG00000011810) #17	SP4 (ENSOANG00000045448) #18	SP8 (ENSOANG00000044983) #19	ITGB8 (ENSOANG00000031649) #21	MACC1 (ENSOANG00000009618) #22	ENSOANG00000048362	POLR1F (ENSOANG00000009616) #25	FERD3L (ENSOANG00000009615) #26	TWIST1 (ENSOANG00000009614) #27	ENSOANG00000009613 #28	SNX13 (ENSOANG00000009612) #30	AHR (ENSOANG00000009611) #32	AGR2 (ENSOANG00000013496) #34	TSPAN13 (ENSOANG00000013497) #33	BZW2 (ENSOANG00000020501) #35	ANKMY2 (ENSOANG00000012340) #36	ENSOANG00000028622	SOSTDC1 (ENSOANG00000007457)	CRPPA (ENSOANG00000050636)	MEOX2 (ENSOANG00000050568)
Sauria	ANCESTRAL SPECIES	15	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00940000164650 #9	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT00940000166052	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00940000176107	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000165642
Archelosauria	ANCESTRAL SPECIES	6	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00940000164650 #9	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT00940000166052	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00940000176107	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000165642
Archosauria	ANCESTRAL SPECIES		ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000166052	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000165642	ENSGT00390000014900.b.b.a	ENSGT00390000006412
Aves	ANCESTRAL SPECIES	5	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000166052	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000165642	ENSGT00390000014900.b.b.a	ENSGT00390000006412
Neognathae	ANCESTRAL SPECIES		ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000166052	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000165642	ENSGT00390000014900.b.b.a	ENSGT00390000006412
Neognathae_b	ANCESTRAL SPECIES	9	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000166052	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000165642	ENSGT00390000014900.b.b.a	ENSGT00390000006412
Neognathae_c	ANCESTRAL SPECIES	12	ENSGT01030000235027	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000166052	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000165642	ENSGT00390000014900.b.b.a	ENSGT00390000006412
Kakapo	MODERN SPECIES		TRA2A (ENSSHBG00005006071)	IGF2BP3 (ENSSHBG00005006060)	MALSU1 (ENSSHBG00005006036)	GPNMB (ENSSHBG00005006015)	NUP42 (ENSSHBG00005005997)	KLHL7 (ENSSHBG00005005988)	HYCC1 (ENSSHBG00005005975) #8	TOMM7 (ENSSHBG00005005949) #10	IL6 (ENSSHBG00005005927) #11	RAPGEF5 (ENSSHBG00005005638) #14	CDCA7L (ENSSHBG00005005553) #15	SP4 (ENSSHBG00005005518) #18	SP8 (ENSSHBG00005005491) #19	ENSSHBG00005004496	ITGB8 (ENSSHBG00005003476) #21	MACC1 (ENSSHBG00005003317) #22	TMEM196 (ENSSHBG00005003293) #24	POLR1F (ENSSHBG00005003281) #25	FERD3L (ENSSHBG00005003272) #26	TWIST1 (ENSSHBG00005003266) #27	ENSSHBG00005003257 #28	SNX13 (ENSSHBG00005002909) #30	AHR (ENSSHBG00005002815) #32	AGR2 (ENSSHBG00005002734) #34	AGR3 (ENSSHBG00005002767) ##34	TSPAN13 (ENSSHBG00005002714) #33	BZW2 (ENSSHBG00005002692) #35	ANKMY2 (ENSSHBG00005002661) #36	SOSTDC1 (ENSSHBG00005002650)	CRPPA (ENSSHBG00005002643)	MEOX2 (ENSSHBG00005002628)
Golden eagle	MODERN SPECIES	19	TRA2A (ENSACCG00020008788)	ENSACCG00020008808	IGF2BP3 (ENSACCG00020008839)	GPNMB (ENSACCG00020008876)	NUP42 (ENSACCG00020008899)	KLHL7 (ENSACCG00020008923)	HYCC1 (ENSACCG00020008963) #8	TOMM7 (ENSACCG00020008997) #10	IL6 (ENSACCG00020009008) #11	RAPGEF5 (ENSACCG00020009095) #14	CDCA7L (ENSACCG00020009154) #15	SP4 (ENSACCG00020009172) #18	SP8 (ENSACCG00020009193) #19	ENSACCG00020009247	ITGB8 (ENSACCG00020009279) #21	MACC1 (ENSACCG00020009314) #22	TMEM196 (ENSACCG00020009335) #24	POLR1F (ENSACCG00020009344) #25	FERD3L (ENSACCG00020009353) #26	TWIST1 (ENSACCG00020009360) #27	ENSACCG00020009371 #28	ENSACCG00020009408 #28	SNX13 (ENSACCG00020009466) #30	AHR (ENSACCG00020009532) #32	AGR3 (ENSACCG00020009548) ##34	AGR2 (ENSACCG00020009559) #34	TSPAN13 (ENSACCG00020009580) #33	BZW2 (ENSACCG00020009594) #35	ANKMY2 (ENSACCG00020009615) #36	ENSACCG00020009649	SOSTDC1 (ENSACCG00020009676)
Passeriformes	ANCESTRAL SPECIES		ENSGT01030000235027	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000157827 #18	ENSGT00940000155287	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307.q.a #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000165642	ENSGT00390000014900.b.b.a	ENSGT00390000006412
Great tit	MODERN SPECIES	11	ENSPMJG00000000878	TRA2A (ENSPMJG00000000864)	IGF2BP3 (ENSPMJG00000000724)	MALSU1 (ENSPMJG00000000709)	GPNMB (ENSPMJG00000000706)	ENSPMJG00000000696	KLHL7 (ENSPMJG00000000681)	HYCC1 (ENSPMJG00000000633) #8	TOMM7 (ENSPMJG00000000595) #10	IL6 (ENSPMJG00000000569) #11	RAPGEF5 (ENSPMJG00000000453) #14	CDCA7L (ENSPMJG00000000396) #15	SP4 (ENSPMJG00000000293) #18	ENSPMJG00000000174	ITGB8 (ENSPMJG00000000149) #21	MACC1 (ENSPMJG00000000121) #22	TMEM196 (ENSPMJG00000000110) #24	POLR1F (ENSPMJG00000000090) #25	FERD3L (ENSPMJG00000000080) #26	TWIST1 (ENSPMJG00000011228) #27	HDAC9 (ENSPMJG00000011218) #28	SNX13 (ENSPMJG00000011205) #30	AHR (ENSPMJG00000011049) #32	AGR3 (ENSPMJG00000011045) ##34	AGR2 (ENSPMJG00000011035) #34	TSPAN13 (ENSPMJG00000011032) #33	BZW2 (ENSPMJG00000011023) #35	ANKMY2 (ENSPMJG00000011018) #36	ENSPMJG00000011015	SOSTDC1 (ENSPMJG00000011014)	CRPPA (ENSPMJG00000011012)
Passeriformes_d	ANCESTRAL SPECIES		ENSGT01030000235027	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000157827 #18	ENSGT00940000166052	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000160307.r #28	ENSGT00940000160307.q.a #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000165642	ENSGT00390000014900.b.b.a	ENSGT00390000006412
Passeriformes_g	ANCESTRAL SPECIES	6	ENSGT01030000235027	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000157827 #18	ENSGT00940000166052	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000160307.r #28	ENSGT00940000160307.q.a #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000165642	ENSGT00390000014900.b.b.a	ENSGT00390000006412
Passeroidea	ANCESTRAL SPECIES	6	ENSGT01030000235027	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000157827 #18	ENSGT00940000166052	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000160307.q.a #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000165642	ENSGT00390000014900.b.b.a	ENSGT00390000006412	ENSGT00940000154018.b
Common canary	MODERN SPECIES	5	ENSSCAG00000014927	TRA2A (ENSSCAG00000014922)	IGF2BP3 (ENSSCAG00000014858)	MALSU1 (ENSSCAG00000014831)	GPNMB (ENSSCAG00000014821)	ENSSCAG00000014813	KLHL7 (ENSSCAG00000014800)	HYCC1 (ENSSCAG00000014781) #8	TOMM7 (ENSSCAG00000014766) #10	IL6 (ENSSCAG00000014761) #11	RAPGEF5 (ENSSCAG00000014692) #14	CDCA7L (ENSSCAG00000014674) #15	SP4 (ENSSCAG00000014662) #18	ENSSCAG00000013986	ITGB8 (ENSSCAG00000013803) #21	MACC1 (ENSSCAG00000013796) #22	TMEM196 (ENSSCAG00000013793) #24	POLR1F (ENSSCAG00000013787) #25	FERD3L (ENSSCAG00000013784) #26	ENSSCAG00000013779 #28	ENSSCAG00000013753 #28	SNX13 (ENSSCAG00000013738) #30	AHR (ENSSCAG00000013729) #32	AGR3 (ENSSCAG00000013713) ##34	AGR2 (ENSSCAG00000013706) #34	TSPAN13 (ENSSCAG00000013701) #33	BZW2 (ENSSCAG00000013699) #35	ANKMY2 (ENSSCAG00000013696) #36	ENSSCAG00000013686	SOSTDC1 (ENSSCAG00000013682)	CRPPA (ENSSCAG00000013677)
Zebra finch	MODERN SPECIES	12	TRA2A (ENSTGUG00000002795)	IGF2BP3 (ENSTGUG00000002773)	MALSU1 (ENSTGUG00000002770)	GPNMB (ENSTGUG00000002763)	NUP42 (ENSTGUG00000002757)	ENSTGUG00000023098	KLHL7 (ENSTGUG00000002740)	HYCC1 (ENSTGUG00000002729) #8	ENSTGUG00000028291 #10	IL6 (ENSTGUG00000002725) #11	RAPGEF5 (ENSTGUG00000002700) #14	CDCA7L (ENSTGUG00000002689) #15	SP8 (ENSTGUG00000023526) #19	ENSTGUG00000002657	ITGB8 (ENSTGUG00000002650) #21	MACC1 (ENSTGUG00000002649) #22	TMEM196 (ENSTGUG00000002647) #24	POLR1F (ENSTGUG00000002645) #25	FERD3L (ENSTGUG00000002644) #26	TWIST1 (ENSTGUG00000002643) #27	ENSTGUG00000002613 #28	ENSTGUG00000027596 #28	SNX13 (ENSTGUG00000002596) #30	AHR (ENSTGUG00000002585) #32	AGR3 (ENSTGUG00000002580) ##34	AGR2 (ENSTGUG00000002578) #34	TSPAN13 (ENSTGUG00000021415) #33	BZW2 (ENSTGUG00000002567) #35	ANKMY2 (ENSTGUG00000002557) #36	ENSTGUG00000002553	SOSTDC1 (ENSTGUG00000026528)
Medium ground finch	MODERN SPECIES	36	CCDC126 (ENSGFOG00000010360)	TRA2A (ENSGFOG00000010363)	IGF2BP3 (ENSGFOG00000010371)	MALSU1 (ENSGFOG00000010388)	GPNMB (ENSGFOG00000006901)	NUP42 (ENSGFOG00000006947)	KLHL7 (ENSGFOG00000006962)	HYCC1 (ENSGFOG00000007016) #8	ENSGFOG00000007033	IL6 (ENSGFOG00000007038) #11	RAPGEF5 (ENSGFOG00000007060) #14	CDCA7L (ENSGFOG00000007343) #15	SP4 (ENSGFOG00000007656) #18	ENSGFOG00000007681	ITGB8 (ENSGFOG00000007817) #21	MACC1 (ENSGFOG00000007835) #22	TMEM196 (ENSGFOG00000007851) #24
Flycatcher	MODERN SPECIES	11	ENSFALG00000028399	TRA2A (ENSFALG00000009605)	IGF2BP3 (ENSFALG00000009615)	MALSU1 (ENSFALG00000027606)	GPNMB (ENSFALG00000009646)	NUP42 (ENSFALG00000009653)	KLHL7 (ENSFALG00000009689)	FAM126A (ENSFALG00000026843) #8	ENSFALG00000024168	IL6 (ENSFALG00000025945) #11	RAPGEF5 (ENSFALG00000009738) #14	CDCA7L (ENSFALG00000009744) #15	SP4 (ENSFALG00000009748) #18	ENSFALG00000009749	ITGB8 (ENSFALG00000009752) #21	MACC1 (ENSFALG00000009756) #22	TMEM196 (ENSFALG00000009758) #24	POLR1F (ENSFALG00000009761) #25	FERD3L (ENSFALG00000014487) #26	TWIST1 (ENSFALG00000009781) #27	ENSFALG00000009805 #28	ENSFALG00000027289 #28	SNX13 (ENSFALG00000009859) #30	AHR (ENSFALG00000009904) #32	AGR3 (ENSFALG00000009910) ##34	AGR2 (ENSFALG00000023140) #34	TSPAN13 (ENSFALG00000009925) #33	BZW2 (ENSFALG00000009931) #35	ANKMY2 (ENSFALG00000026739) #36	ENSFALG00000009961	SOSTDC1 (ENSFALG00000009968)
Galloanserae	ANCESTRAL SPECIES		ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000166052	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000165642	ENSGT00390000014900.b.b.a
Phasianidae	ANCESTRAL SPECIES	1	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000166052	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000165642	ENSGT00390000014900.b.b.a	ENSGT00390000006412
Phasianidae_b	ANCESTRAL SPECIES	1	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118.f	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000166052	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000165642	ENSGT00390000014900.b.b.a
Chicken	MODERN SPECIES	11	MALSU1 (ENSGALG00010001460)	GPNMB (ENSGALG00010001409)	ENSGALG00010001404	NUP42 (ENSGALG00010001402)	KLHL7 (ENSGALG00010001397)	FAM126A (ENSGALG00010002046) #8	TOMM7 (ENSGALG00010001991) #10	IL6 (ENSGALG00010001941) #11	RAPGEF5 (ENSGALG00010001923) #14	CDCA7L (ENSGALG00010001440) #15	ENSGALG00010001436	SP4 (ENSGALG00010003824) #18	SP8 (ENSGALG00010003079) #19	ABCB5 (ENSGALG00010003061)	ITGB8 (ENSGALG00010003791) #21	MACC1 (ENSGALG00010003698) #22	TMEM196 (ENSGALG00010002701) #24	TWISTNB (ENSGALG00010003087) #25	FERD3L (ENSGALG00010005018) #26	TWIST1 (ENSGALG00010003808) #27	HDAC9 (ENSGALG00010003764) #28	SNX13 (ENSGALG00010003595) #30	AHR1A (ENSGALG00010004433) #32	AGR3 (ENSGALG00010004391) ##34	AGR2 (ENSGALG00010004377) #34	TSPAN13 (ENSGALG00010004367) #33	BZW2 (ENSGALG00010005255) #35	ANKMY2 (ENSGALG00010004355) #36	ENSGALG00010004336	SOSTDC1 (ENSGALG00010004344)	CRPPA (ENSGALG00010004302)
Turkey	MODERN SPECIES	26	TRA2A (ENSMGAG00000010514)	IGF2BP3 (ENSMGAG00000010497)	MALSU1 (ENSMGAG00000010496)	GPNMB (ENSMGAG00000010478)	ENSMGAG00000012197	KLHL7 (ENSMGAG00000010450)	HYCC1 (ENSMGAG00000010430) #8	ENSMGAG00000021520	IL6 (ENSMGAG00000016678) #11	ENSMGAG00000022071 #14	RAPGEF5 (ENSMGAG00000010394) #14	CDCA7L (ENSMGAG00000010378) #15	SP4 (ENSMGAG00000010367) #18	ENSMGAG00000010305	ITGB8 (ENSMGAG00000011297) #21	MACC1 (ENSMGAG00000011308) #22	ENSMGAG00000010300	POLR1F (ENSMGAG00000010296) #25	FERD3L (ENSMGAG00000015843) #26	HDAC9 (ENSMGAG00000010234) #28	SNX13 (ENSMGAG00000010193) #30	AHR (ENSMGAG00000010174) #32	AGR3 (ENSMGAG00000010167) ##34	AGR2 (ENSMGAG00000010157) #34	BZW2 (ENSMGAG00000010129) #35	ANKMY2 (ENSMGAG00000010117) #36	ENSMGAG00000010114	SOSTDC1 (ENSMGAG00000010106)	CRPPA (ENSMGAG00000010099)	AGMO (ENSMGAG00000010089)	DGKB (ENSMGAG00000010034)
Japanese quail	MODERN SPECIES	11	TRA2A (ENSCJPG00005012500)	IGF2BP3 (ENSCJPG00005012087)	MALSU1 (ENSCJPG00005012072)	GPNMB (ENSCJPG00005012071)	NUP42 (ENSCJPG00005012070)	KLHL7 (ENSCJPG00005012069)	HYCC1 (ENSCJPG00005012067) #8	TOMM7 (ENSCJPG00005012064) #10	ENSCJPG00005012063 #11	RAPGEF5 (ENSCJPG00005012022) #14	CDCA7L (ENSCJPG00005012021) #15	SP4 (ENSCJPG00005012018) #18	SP8 (ENSCJPG00005012005) #19	ENSCJPG00005012000	ITGB8 (ENSCJPG00005011999) #21	MACC1 (ENSCJPG00005011998) #22	ENSCJPG00005011986	POLR1F (ENSCJPG00005011963) #25	FERD3L (ENSCJPG00005011927) #26	TWIST1 (ENSCJPG00005011925) #27	HDAC9 (ENSCJPG00005011923) #28	SNX13 (ENSCJPG00005011883) #30	AHR (ENSCJPG00005011879) #32	AGR3 (ENSCJPG00005011876) ##34	TSPAN13 (ENSCJPG00005011875) #33	AGR2 (ENSCJPG00005011874) #34	BZW2 (ENSCJPG00005011870) #35	ANKMY2 (ENSCJPG00005011860) #36	ENSCJPG00005011857	SOSTDC1 (ENSCJPG00005011854)	CRPPA (ENSCJPG00005011853)
Anatidae	ANCESTRAL SPECIES	1	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000166052	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000163428.b.a	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000165642	ENSGT00390000014900.b.b.a	ENSGT00390000006412
Pink-footed goose	MODERN SPECIES		IGF2BP3 (ENSABRG00000010526)	MALSU1 (ENSABRG00000010548)	GPNMB (ENSABRG00000010565)	NUP42 (ENSABRG00000010578)	KLHL7 (ENSABRG00000010586)	HYCC1 (ENSABRG00000010607) #8	TOMM7 (ENSABRG00000010642) #10	IL6 (ENSABRG00000010652) #11	ENSABRG00000010657 #14	RAPGEF5 (ENSABRG00000010669) #14	CDCA7L (ENSABRG00000010706) #15	SP4 (ENSABRG00000010746) #18	SP8 (ENSABRG00000010759) #19	ENSABRG00000010773	ITGB8 (ENSABRG00000010793) #21	MACC1 (ENSABRG00000010829) #22	TMEM196 (ENSABRG00000010845) #24	POLR1F (ENSABRG00000010855) #25	FERD3L (ENSABRG00000010860) #26	ENSABRG00000010863	HDAC9 (ENSABRG00000010874) #28	SNX13 (ENSABRG00000010973) #30	AHR (ENSABRG00000010992) #32	AGR3 (ENSABRG00000011007) ##34	AGR2 (ENSABRG00000011025) #34	TSPAN13 (ENSABRG00000011056) #33	BZW2 (ENSABRG00000011066) #35	ANKMY2 (ENSABRG00000011077) #36	ENSABRG00000011091	SOSTDC1 (ENSABRG00000011094)	CRPPA (ENSABRG00000011103)
African ostrich	MODERN SPECIES	815														ENSSCUG00000010543	ITGB8 (ENSSCUG00000010554) #21	MACC1 (ENSSCUG00000010555) #22	TMEM196 (ENSSCUG00000010557) #24	FERD3L (ENSSCUG00000010559) #26	HDAC9 (ENSSCUG00000010574) #28	SNX13 (ENSSCUG00000010594) #30	AHR (ENSSCUG00000010601) #32	AGR3 (ENSSCUG00000010605) ##34	AGR2 (ENSSCUG00000010609) #34	TSPAN13 (ENSSCUG00000010610) #33	BZW2 (ENSSCUG00000010613) #35	ANKMY2 (ENSSCUG00000010618) #36	ENSSCUG00000010621	SOSTDC1 (ENSSCUG00000010623)	ENSSCUG00000010624	CRPPA (ENSSCUG00000010629)	MEOX2 (ENSSCUG00000010637)
Australian saltwater crocodile	MODERN SPECIES		MALSU1 (ENSCPRG00005015969)	GPNMB (ENSCPRG00005015967)	NUP42 (ENSCPRG00005015964)	IGF2BP3 (ENSCPRG00005015954)	KLHL7 (ENSCPRG00005015951)	HYCC1 (ENSCPRG00005015946) #8	TOMM7 (ENSCPRG00005015944) #10	IL6 (ENSCPRG00005015943) #11	RAPGEF5 (ENSCPRG00005015927) #14	CDCA7L (ENSCPRG00005015926) #15	DNAH11 (ENSCPRG00005015597) #17	SP4 (ENSCPRG00005015532) #18	ABCB5 (ENSCPRG00005015506) #20	ENSCPRG00005015412	ITGB8 (ENSCPRG00005015376) #21	MACC1 (ENSCPRG00005015373) #22	ENSCPRG00005015353	POLR1F (ENSCPRG00005015351) #25	FERD3L (ENSCPRG00005015338) #26	TWIST1 (ENSCPRG00005015335) #27	ENSCPRG00005015331 #28	ENSCPRG00005015321 #28	SNX13 (ENSCPRG00005015318) #30	AHR (ENSCPRG00005015276) #32	AGR3 (ENSCPRG00005015251) ##34	AGR2 (ENSCPRG00005015225) #34	TSPAN13 (ENSCPRG00005015218) #33	BZW2 (ENSCPRG00005015204) #35	ANKMY2 (ENSCPRG00005015197) #36	ENSCPRG00005015193	ENSCPRG00005015189
Cryptodira	ANCESTRAL SPECIES	4	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00940000164650 #9	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT00940000155287	ENSGT00940000166052	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00940000176107	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000165642
Testudinoidea	ANCESTRAL SPECIES	8	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00940000164650 #9	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT00940000155287	ENSGT00940000166052.a.a.b	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00940000176107	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000165642
Emydidae	ANCESTRAL SPECIES	34	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00940000164650 #9	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT00940000155287	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00940000176107	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000165642	ENSGT00390000014900.b.b.a
painted turtle	MODERN SPECIES	767															ITGB8 (ENSCPBG00000000238) #21	MACC1 (ENSCPBG00000000275) #22	TMEM196 (ENSCPBG00000000325) #24	POLR1F (ENSCPBG00000000367) #25	FERD3L (ENSCPBG00000000383) #26	HDAC9 (ENSCPBG00000000454) #28	TAFA2 (ENSCPBG00000000525)	USP15 (ENSCPBG00000000584)	MON2 (ENSCPBG00000000681)	PPM1H (ENSCPBG00000000753)	AVPR1A (ENSCPBG00000000790)	RXYLT1 (ENSCPBG00000000837)	SRGAP1 (ENSCPBG00000000874)	KICS2 (ENSCPBG00000000939)	ENSCPBG00000000963	RPL18A (ENSCPBG00000000983)	XPOT (ENSCPBG00000001003)
Three-toed box turtle	MODERN SPECIES	30	NUP42 (ENSTMTG00000000062)	KLHL7 (ENSTMTG00000000092)	HYCC1 (ENSTMTG00000000129) #8	ENSTMTG00000000184 #9	IL6 (ENSTMTG00000000298) #11	ENSTMTG00000000340 #14	RAPGEF5 (ENSTMTG00000000391) #14	CDCA7L (ENSTMTG00000000428) #15	ENSTMTG00000000457	DNAH11 (ENSTMTG00000001073) #17	SP4 (ENSTMTG00000002767) #18	SP8 (ENSTMTG00000002773) #19	ABCB5 (ENSTMTG00000002813) #20	ENSTMTG00000003044	ITGB8 (ENSTMTG00000003419) #21	MACC1 (ENSTMTG00000003541) #22	ENSTMTG00000003612	ENSTMTG00000003626	POLR1F (ENSTMTG00000003642) #25	FERD3L (ENSTMTG00000003656) #26	HDAC9 (ENSTMTG00000003728) #28	SNX13 (ENSTMTG00000004244) #30	AHR (ENSTMTG00000004344) #32	AGR3 (ENSTMTG00000004366) ##34	AGR2 (ENSTMTG00000004394) #34	TSPAN13 (ENSTMTG00000004427) #33	BZW2 (ENSTMTG00000004461) #35	ANKMY2 (ENSTMTG00000004634) #36	ENSTMTG00000004665	SOSTDC1 (ENSTMTG00000004694)	CRPPA (ENSTMTG00000004712)
Testudinidae	ANCESTRAL SPECIES	1	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00940000164650 #9	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340 #20	ENSGT00940000166052.a.a.b	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000176107	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a.r #35	ENSGT00390000012561.a.q #35	ENSGT00390000016820 #36	ENSGT00390000014900.b.b.a
Abingdon island giant tortoise	MODERN SPECIES	212												ENSCABG00000000615	ENSCABG00000000463	ENSCABG00000000316	ITGB8 (ENSCABG00000000271) #21	MACC1 (ENSCABG00000000257) #22
Goode s thornscrub tortoise	MODERN SPECIES	11	NUP42 (ENSGEVG00005018404)	KLHL7 (ENSGEVG00005018379)	HYCC1 (ENSGEVG00005018341) #8	ENSGEVG00005018258 #9	TOMM7 (ENSGEVG00005018229) #10	IL6 (ENSGEVG00005018173) #11	RAPGEF5 (ENSGEVG00005018050) #14	CDCA7L (ENSGEVG00005017998) #15	DNAH11 (ENSGEVG00005015389) #17	SP4 (ENSGEVG00005014942) #18	SP8 (ENSGEVG00005014907) #19	ABCB5 (ENSGEVG00005014091) #20	ENSGEVG00005013240	ENSGEVG00005013142	ITGB8 (ENSGEVG00005012960) #21	MACC1 (ENSGEVG00005012771) #22	ENSGEVG00005012739	ENSGEVG00005012707	POLR1F (ENSGEVG00005012571) #25	FERD3L (ENSGEVG00005012548) #26	TWIST1 (ENSGEVG00005012530) #27	HDAC9 (ENSGEVG00005012001) #28	SNX13 (ENSGEVG00005011797) #30	AHR (ENSGEVG00005011706) #32	AGR3 (ENSGEVG00005011646) ##34	AGR2 (ENSGEVG00005011579) #34	TSPAN13 (ENSGEVG00005011518) #33	ENSGEVG00005011416 #35	ENSGEVG00005011387 #35	ANKMY2 (ENSGEVG00005011366) #36	SOSTDC1 (ENSGEVG00005011342)
Chinese turtle	MODERN SPECIES	2225	NUP42 (ENSPSIG00000013521)	KLHL7 (ENSPSIG00000012005)	HYCC1 (ENSPSIG00000011903) #8	ENSPSIG00000010849 #9	ENSPSIG00000010835	IL6 (ENSPSIG00000009973) #11	RAPGEF5 (ENSPSIG00000008835) #14	CDCA7L (ENSPSIG00000007953) #15	ENSPSIG00000009884 #17	ENSPSIG00000009872 #17	SP4 (ENSPSIG00000009131) #18	ABCB5 (ENSPSIG00000005929) #20	ENSPSIG00000005884	ENSPSIG00000000705	ITGB8 (ENSPSIG00000004844) #21	MACC1 (ENSPSIG00000004544) #22	TMEM196 (ENSPSIG00000004454) #24	POLR1F (ENSPSIG00000004395) #25	FERD3L (ENSPSIG00000000691) #26	HDAC9 (ENSPSIG00000011707) #28	SNX13 (ENSPSIG00000010516) #30	AHR (ENSPSIG00000010051) #32	AGR3 (ENSPSIG00000009745) ##34	AGR2 (ENSPSIG00000009717) #34	TSPAN13 (ENSPSIG00000009127) #33	BZW2 (ENSPSIG00000008748) #35	ANKMY2 (ENSPSIG00000008255) #36	ENSPSIG00000008230	SOSTDC1 (ENSPSIG00000008202)	CRPPA (ENSPSIG00000007955)	MEOX2 (ENSPSIG00000007948)
Lepidosauria	ANCESTRAL SPECIES	5	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000166052	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00940000176107	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000165642
Episquamata	ANCESTRAL SPECIES	5	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000166052	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00940000176107	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000165642
Toxicofera	ANCESTRAL SPECIES	4	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000166052	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00940000176107	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT01030000237867
Elapidae	ANCESTRAL SPECIES	5	ENSGT00940000157167.y	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000158880 #17	ENSGT00940000157827.e #18	ENSGT00940000162033.a.a #19	ENSGT00940000166052	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000176107	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a.e #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT01030000237867	ENSGT00390000014900.b.b.a
Elapidae_a	ANCESTRAL SPECIES	19	ENSGT00940000157167.y	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000158880 #17	ENSGT00940000157827.e #18	ENSGT00940000162033.a.a #19	ENSGT00940000166052	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000176107	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a.e #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT01030000237867	ENSGT00390000014900.b.b.a
Acanthophiinae	ANCESTRAL SPECIES	19	ENSGT00940000157167.y	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000158880 #17	ENSGT00940000157827.e.a #18	ENSGT00940000162033.a.a #19	ENSGT00940000166052	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000176107	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a.e #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT01030000237867	ENSGT00390000014900.b.b.a
Mainland tiger snake	MODERN SPECIES	96	GPNMB (ENSNSUG00000015189)	NUP42 (ENSNSUG00000015190)	KLHL7 (ENSNSUG00000015191)	HYCC1 (ENSNSUG00000015192) #8	TOMM7 (ENSNSUG00000015194) #10	IL6 (ENSNSUG00000015195) #11	ENSNSUG00000015196 #14	RAPGEF5 (ENSNSUG00000015197) #14	DNAH11 (ENSNSUG00000015198) #17	ENSNSUG00000015298 #18	ENSNSUG00000015299 #18	SP8 (ENSNSUG00000015300) #19	ENSNSUG00000015301	ITGB8 (ENSNSUG00000015304) #21	ENSNSUG00000015307	MACC1 (ENSNSUG00000015308) #22	ENSNSUG00000015309	POLR1F (ENSNSUG00000015310) #25	TWIST1 (ENSNSUG00000015311) #27	ENSNSUG00000015312 #28	ENSNSUG00000015314 #28	ENSNSUG00000015317	SNX13 (ENSNSUG00000015318) #30	AHR (ENSNSUG00000015321) #32	AGR3 (ENSNSUG00000015322) ##34	AGR2 (ENSNSUG00000015323) #34	TSPAN13 (ENSNSUG00000015326) #33	BZW2 (ENSNSUG00000015329) #35	ANKMY2 (ENSNSUG00000015330) #36	ENSNSUG00000015333	SOSTDC1 (ENSNSUG00000015335)
Eastern brown snake	MODERN SPECIES	31	GPNMB (ENSPTXG00000013975)	NUP42 (ENSPTXG00000013972)	KLHL7 (ENSPTXG00000013969)	HYCC1 (ENSPTXG00000013968) #8	TOMM7 (ENSPTXG00000013967) #10	ENSPTXG00000013965 #11	ENSPTXG00000013964 #14	RAPGEF5 (ENSPTXG00000013963) #14	DNAH11 (ENSPTXG00000013806) #17	ENSPTXG00000013777 #18	SP8 (ENSPTXG00000013775) #19	ENSPTXG00000013773	ENSPTXG00000013771	ENSPTXG00000013769	ITGB8 (ENSPTXG00000013766) #21	MACC1 (ENSPTXG00000013764) #22	ENSPTXG00000013763	ENSPTXG00000013762	POLR1F (ENSPTXG00000013761) #25	FERD3L (ENSPTXG00000013759) #26	TWIST1 (ENSPTXG00000013757) #27	ENSPTXG00000013755 #28	ENSPTXG00000013748 #28	SNX13 (ENSPTXG00000013739) #30	AHR (ENSPTXG00000013738) #32	AGR3 (ENSPTXG00000013736) ##34	AGR2 (ENSPTXG00000013735) #34	TSPAN13 (ENSPTXG00000013733) #33	BZW2 (ENSPTXG00000013730) #35	ANKMY2 (ENSPTXG00000013728) #36	SOSTDC1 (ENSPTXG00000013727)
Blue-lipped sea krait	MODERN SPECIES	1640																MACC1 (ENSLLTG00000002390) #22
Indian cobra	MODERN SPECIES	337	ENSNNAG00000013824	IGF2BP3 (ENSNNAG00000013753)	MALSU1 (ENSNNAG00000013741)	GPNMB (ENSNNAG00000013648)	NUP42 (ENSNNAG00000013600)	KLHL7 (ENSNNAG00000013544)	HYCC1 (ENSNNAG00000013425) #8	TOMM7 (ENSNNAG00000013408) #10	ENSNNAG00000013394	RAPGEF5 (ENSNNAG00000013329) #14	DNAH11 (ENSNNAG00000009701) #17	ENSNNAG00000009446 #18	SP8 (ENSNNAG00000009420) #19	ENSNNAG00000008577	ITGB8 (ENSNNAG00000008483) #21	MACC1 (ENSNNAG00000008401) #22	ENSNNAG00000008385	ENSNNAG00000008374	POLR1F (ENSNNAG00000008362) #25	FERD3L (ENSNNAG00000008342) #26	TWIST1 (ENSNNAG00000008335) #27	ENSNNAG00000008312	ENSNNAG00000008268 #28	ENSNNAG00000008127 #28	SNX13 (ENSNNAG00000007803) #30	AHR (ENSNNAG00000007694) #32	AGR3 (ENSNNAG00000017489) ##34	AGR2 (ENSNNAG00000017482) #34	TSPAN13 (ENSNNAG00000017475) #33	BZW2 (ENSNNAG00000017464) #35	SOSTDC1 (ENSNNAG00000017457)
Lizard	MODERN SPECIES	5	GPNMB (ENSACAG00000013625)	NUP42 (ENSACAG00000040314)	KLHL7 (ENSACAG00000013755)	HYCC1 (ENSACAG00000013949) #8	ENSACAG00000043261	TOMM7 (ENSACAG00000014032) #10	IL6 (ENSACAG00000029018) #11	RAPGEF5 (ENSACAG00000014038) #14	CDCA7L (ENSACAG00000014127) #15	DNAH11 (ENSACAG00000024709) #17	SP4 (ENSACAG00000014193) #18	ENSACAG00000041413	ENSACAG00000011331	ITGB8 (ENSACAG00000011506) #21	ENSACAG00000043443	MACC1 (ENSACAG00000011775) #22	TMEM196 (ENSACAG00000011804) #24	POLR1F (ENSACAG00000011817) #25	FERD3L (ENSACAG00000011821) #26	twist1 (ENSACAG00000011825) #27	ENSACAG00000025814 #28	ENSACAG00000012095 #28	SNX13 (ENSACAG00000012199) #30	AHR (ENSACAG00000023372) #32	AGR3 (ENSACAG00000012579) ##34	agr2 (ENSACAG00000012587) #34	TSPAN13 (ENSACAG00000012640) #33	BZW2 (ENSACAG00000012646) #35	ANKMY2 (ENSACAG00000012769) #36	ENSACAG00000012804	SOSTDC1 (ENSACAG00000037311)
Laterata	ANCESTRAL SPECIES	10	ENSGT00940000154957.B	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000166052	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163002 #24	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000162831 #27	ENSGT00940000160307.cb #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000165642	ENSGT00390000014900.b.b.a	ENSGT00390000006412	ENSGT00940000154018.b
Common wall lizard	MODERN SPECIES	3	MALSU1 (ENSPMRG00000017403)	GPNMB (ENSPMRG00000017398)	NUP42 (ENSPMRG00000017384)	KLHL7 (ENSPMRG00000017351)	HYCC1 (ENSPMRG00000017338) #8	TOMM7 (ENSPMRG00000017328) #10	IL6 (ENSPMRG00000017322) #11	RAPGEF5 (ENSPMRG00000017301) #14	CDCA7L (ENSPMRG00000017287) #15	DNAH11 (ENSPMRG00000016097) #17	SP4 (ENSPMRG00000015846) #18	ENSPMRG00000015841	SP8 (ENSPMRG00000015834) #19	ENSPMRG00000015816	ITGB8 (ENSPMRG00000015810) #21	MACC1 (ENSPMRG00000015797) #22	TMEM196 (ENSPMRG00000015791) #24	POLR1F (ENSPMRG00000015787) #25	FERD3L (ENSPMRG00000015775) #26	TWIST1 (ENSPMRG00000015772) #27	HDAC9 (ENSPMRG00000015702) #28	SNX13 (ENSPMRG00000015679) #30	AHR (ENSPMRG00000015668) #32	AGR3 (ENSPMRG00000015660) ##34	AGR2 (ENSPMRG00000015651) #34	BZW2 (ENSPMRG00000015636) #35	ANKMY2 (ENSPMRG00000015630) #36	TSPAN13 (ENSPMRG00000015628) #33	SOSTDC1 (ENSPMRG00000015624)	CRPPA (ENSPMRG00000015617)	ENSPMRG00000015612
Argentine black and white tegu	MODERN SPECIES	5	ENSSMRG00000003455	MALSU1 (ENSSMRG00000003463)	GPNMB (ENSSMRG00000003470)	NUP42 (ENSSMRG00000003509)	KLHL7 (ENSSMRG00000003538)	HYCC1 (ENSSMRG00000003546) #8	TOMM7 (ENSSMRG00000003554) #10	ENSSMRG00000003556 #11	RAPGEF5 (ENSSMRG00000003576) #14	CDCA7L (ENSSMRG00000003590) #15	DNAH11 (ENSSMRG00000003615) #17	SP4 (ENSSMRG00000005181) #18	SP8 (ENSSMRG00000005210) #19	ENSSMRG00000005214	ITGB8 (ENSSMRG00000007645) #21	MACC1 (ENSSMRG00000007651) #22	TMEM196 (ENSSMRG00000007653) #24	POLR1F (ENSSMRG00000007656) #25	FERD3L (ENSSMRG00000007660) #26	TWIST1 (ENSSMRG00000007669) #27	ENSSMRG00000007698 #28	ENSSMRG00000007714 #28	SNX13 (ENSSMRG00000007718) #30	AHR (ENSSMRG00000007757) #32	AGR3 (ENSSMRG00000007837) ##34	AGR2 (ENSSMRG00000007838) #34	BZW2 (ENSSMRG00000007841) #35	ANKMY2 (ENSSMRG00000007843) #36	ENSSMRG00000007844	SOSTDC1 (ENSSMRG00000007929)	CRPPA (ENSSMRG00000007934)
tuatara	MODERN SPECIES	1878	IGF2BP3 (ENSSPUG00000006162)	MALSU1 (ENSSPUG00000006180)	GPNMB (ENSSPUG00000006192)	NUP42 (ENSSPUG00000006209)	KLHL7 (ENSSPUG00000006222)	HYCC1 (ENSSPUG00000006252) #8	TOMM7 (ENSSPUG00000006271) #10	ENSSPUG00000006284 #14	RAPGEF5 (ENSSPUG00000006313) #14	CDCA7L (ENSSPUG00000006361) #15	DNAH11 (ENSSPUG00000006480) #17	SP4 (ENSSPUG00000006899) #18	ABCB5 (ENSSPUG00000007032) #20	ENSSPUG00000007506	ITGB8 (ENSSPUG00000007535) #21	MACC1 (ENSSPUG00000007564) #22	ENSSPUG00000007578	ENSSPUG00000007583	POLR1F (ENSSPUG00000007595) #25	HDAC9 (ENSSPUG00000007631) #28	ENSSPUG00000007649	ENSSPUG00000007655 #30	ENSSPUG00000007676 #30
Anura	ANCESTRAL SPECIES	12	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00940000164650.d #9	ENSGT00940000164650.c #9	ENSGT01060000248729	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137 #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000161340.a.a #20	ENSGT00940000161340.b #20	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000163428.b.a	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.a ##34	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000165642	ENSGT00390000017845	ENSGT00390000014900.b.b.a
Frog	MODERN SPECIES	6	ENSXETG00000043090	tomm7 (ENSXETG00000042882) #10	il6 (ENSXETG00000049395) #11	ENSXETG00000046488	rapgef5 (ENSXETG00000007409) #14	cdca7l (ENSXETG00000007411) #15	dnah11 (ENSXETG00000007412) #17	sp4 (ENSXETG00000007429) #18	ENSXETG00000045520	ENSXETG00000040315	sp8 (ENSXETG00000040083) #19	abcb5 (ENSXETG00000043940) #20	XB950724 [provisional:abcb1] (ENSXETG00000023590) #20	itgb8 (ENSXETG00000013431) #21	ENSXETG00000042905	macc1 (ENSXETG00000013440) #22	ENSXETG00000042991	tmem196 (ENSXETG00000032855)	ENSXETG00000044065	polr1f (ENSXETG00000013443) #25	ferd3l (ENSXETG00000031751) #26	twist1 (ENSXETG00000025630)	ENSXETG00000047590	hdac9 (ENSXETG00000013445) #28	snx13 (ENSXETG00000022783) #30	ahr (ENSXETG00000022784) #32	agr3 (ENSXETG00000022793) ##34	agr2 (ENSXETG00000025625) #34	tspan13 (ENSXETG00000036658) #33	bzw2 (ENSXETG00000022795) #35	ankmy2 (ENSXETG00000022796) #36
Leishan spiny toad	MODERN SPECIES	8	RAPGEF5 (ENSLLEG00000023707) #14	ENSLLEG00000023652	CDCA7L (ENSLLEG00000023490) #15	DNAH11 (ENSLLEG00000020467) #17	SP4 (ENSLLEG00000020085) #18	ENSLLEG00000020041	ENSLLEG00000020011	ENSLLEG00000019992	SP8 (ENSLLEG00000019954) #19	ENSLLEG00000019932	ENSLLEG00000019398 #20	ENSLLEG00000018911 #20	ENSLLEG00000018853	ITGB8 (ENSLLEG00000018670) #21	ENSLLEG00000018641	MACC1 (ENSLLEG00000018585) #22	ENSLLEG00000018447	POLR1F (ENSLLEG00000018384) #25	FERD3L (ENSLLEG00000018341) #26	ENSLLEG00000018324	HDAC9 (ENSLLEG00000017886) #28	ENSLLEG00000017827	SNX13 (ENSLLEG00000017251) #30	AHR (ENSLLEG00000017103) #32	ENSLLEG00000017077	AGR3 (ENSLLEG00000016975) ##34	AGR2 (ENSLLEG00000016875) #34	TSPAN13 (ENSLLEG00000016752) #33	BZW2 (ENSLLEG00000016632) #35	ANKMY2 (ENSLLEG00000016517) #36	ENSLLEG00000016475
Coelacanth	MODERN SPECIES	315															ITGB8 (ENSLACG00000001236) #21	MACC1 (ENSLACG00000006340) #22	TMEM196 (ENSLACG00000009751) #24	POLR1F (ENSLACG00000010508) #25	FERD3L (ENSLACG00000013215) #26	twist1b (ENSLACG00000013366)	HDAC9 (ENSLACG00000015595) #28	SNX13 (ENSLACG00000017033) #30
Actinopterygii	ANCESTRAL SPECIES	9	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00940000164650 #9	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137.a #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000166052	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000163428.b.a	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000165642	ENSGT00390000014900.b.b.a	ENSGT00390000006412	ENSGT00940000154018.b.b
Neopterygii	ANCESTRAL SPECIES	7	ENSGT00390000015035	ENSGT00950000183188.B	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b #8	ENSGT00940000164650 #9	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137.a #14	ENSGT00940000159108 #15	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.a #19	ENSGT00940000166052	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163281	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000163428.b.a	ENSGT00940000160307 #28	ENSGT00950000182856.a.a.a #30	ENSGT00940000154486.b.a.b #32	ENSGT00530000063273.b.a.b.a.b #34	ENSGT00940000157010 #33	ENSGT00390000012561.a #35	ENSGT00390000016820 #36	ENSGT00940000165642	ENSGT00390000014900.b.b.a	ENSGT00390000006412	ENSGT00940000154018.b.b
Osteoglossocephalai	ANCESTRAL SPECIES	51	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT00390000000878 #11	ENSGT00940000155137.b #14	ENSGT01030000235040	ENSGT00940000155137.a.b #14	ENSGT00940000159108 #15	ENSGT00940000154807.a.a	ENSGT00940000158906.i	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000157827 #18	ENSGT00940000162033.a.b ##19	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b #22	ENSGT00940000163281.a	ENSGT00940000163428.b.b	ENSGT00940000163281.b	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00940000154486.b.a.b #32	ENSGT00950000182908.C.b	ENSGT00390000013823.a	ENSGT00950000182856.a.a.a #30	ENSGT00950000182908.C.a	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	8	ENSGT00730000111361	ENSGT00940000156245.a.a	ENSGT00520000055666.b	ENSGT00400000022168.a	ENSGT00940000154807.a.a	ENSGT00940000158906.i	ENSGT00940000164650 #9	ENSGT00940000155137.b #14	ENSGT00940000155137.a.a #14	ENSGT00940000159108.j #15	ENSGT00940000158880 #17	ENSGT00940000157827.h #18	ENSGT00940000162033.a.a #19	ENSGT00940000166052	ENSGT00940000155287	ENSGT00390000013151.a.b.e #22	ENSGT00940000163281.a	ENSGT00940000163428.b.b	ENSGT00940000154486.b.a.b.m #32	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000160267	ENSGT00990000208316	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00390000003635.h.a	ENSGT00950000183025.b.a.`b	ENSGT00940000155255.db
Asian bonytongue	MODERN SPECIES	9	NKD2 (ENSSFOG00015001063)	PLEKHG4B (ENSSFOG00015001043)	si:ch211-269k10.5 (ENSSFOG00015001023)	PTDSS1 (ENSSFOG00015000952)	ENSSFOG00015000940	rbm24b (ENSSFOG00015032870)	ENSSFOG00015000911	smpd5 (ENSSFOG00015000870)	FHOD3 (ENSSFOG00015028281)	SLC6A18 (ENSSFOG00015000747)	ENSSFOG00015000722 #9	RAPGEF5 (ENSSFOG00015000632) #14	SP4 (ENSSFOG00015025683) #18	sp8b (ENSSFOG00015026123) #19	ENSSFOG00015000471	macc1 (ENSSFOG00015000431) #22	ENSSFOG00015000407	ENSSFOG00015000381	hdac9b (ENSSFOG00015000330)	ahr1a (ENSSFOG00015000320) #32	hacl1 (ENSSFOG00015000239)	COLQ (ENSSFOG00015000185)	plekha8 (ENSSFOG00015000156)	fkbp14 (ENSSFOG00015028498)	ENSSFOG00015000096	CHN2 (ENSSFOG00015021811)	cpvl (ENSSFOG00015021768)	CREB5 (ENSSFOG00015021739)	ENSSFOG00015030257	JAZF1 (ENSSFOG00015026612)	tax1bp1b (ENSSFOG00015021686)
P. kingsleyae	MODERN SPECIES	69								sp8b (ENSPKIG00000007088) #19	ENSPKIG00000007436	ENSPKIG00000008113	ENSPKIG00000008135	ENSPKIG00000008153	ENSPKIG00000008168	ENSPKIG00000008186	ABCB5 (ENSPKIG00000008234) #20	macc1 (ENSPKIG00000008306) #22	twist1b (ENSPKIG00000008335)	hdac9b (ENSPKIG00000008372)	ahr1a (ENSPKIG00000008425) #32	ANKRD28 (ENSPKIG00000008471)	hacl1 (ENSPKIG00000008678)	COLQ (ENSPKIG00000008863)	plekha8 (ENSPKIG00000008918)	fkbp14 (ENSPKIG00000008955)	ENSPKIG00000008975	CHN2 (ENSPKIG00000008999)	cpvl (ENSPKIG00000009045)	CREB5 (ENSPKIG00000009122)	JAZF1 (ENSPKIG00000009182)	tax1bp1b (ENSPKIG00000009206)	hibadhb (ENSPKIG00000009313)
Osteoglossiformes	ANCESTRAL SPECIES	6	ENSGT00940000154807.a.b.b	ENSGT00940000154896	ENSGT00940000158906.j	ENSGT00390000018531	ENSGT00390000000118	ENSGT00940000155602	ENSGT00800000125328	ENSGT00390000011295.b #8	ENSGT00390000014833 #10	ENSGT01030000235040	ENSGT00940000155137.a.b #14	ENSGT00940000159108.i #15	ENSGT00940000157827.g #18	ENSGT00940000162033.a.b ##19	ENSGT01090000259987.b.a #21	ENSGT00390000013151.a.b.f #22	ENSGT00940000163281.b	ENSGT00390000005553 #25	ENSGT00940000161409 #26	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182856.a.a.a #30	ENSGT00950000182908.C.a	ENSGT00390000013823.a	ENSGT00940000157248.c.b
Asian bonytongue	MODERN SPECIES	15	slc6a19b (ENSSFOG00015011674)	SLC6A19 (ENSSFOG00015011737)	SLC6A19 (ENSSFOG00015012005)	slc6a18 (ENSSFOG00015012044)	tert (ENSSFOG00015012121)	nup42 (ENSSFOG00015012395)	klhl7 (ENSSFOG00015012416)	hycc1 (ENSSFOG00015012478) #8	TOMM7 (ENSSFOG00015032890) #10	ENSSFOG00015012577	RAPGEF5 (ENSSFOG00015012593) #14	CDCA7L (ENSSFOG00015012653) #15	sp4 (ENSSFOG00015032600) #18	sp8a (ENSSFOG00015028849) ##19	ITGB8 (ENSSFOG00015012748) #21	macc1 (ENSSFOG00015012762) #22	ENSSFOG00015012775	polr1f (ENSSFOG00015012788) #25	FERD3L (ENSSFOG00015025160) #26	twist1a (ENSSFOG00015012815)	ENSSFOG00015032351	SNX13 (ENSSFOG00015012849) #30	ANKRD28 (ENSSFOG00015012994)	btd (ENSSFOG00015013192)	COLQ (ENSSFOG00015013200)	ENSSFOG00015013224	ENSSFOG00015013229	ENSSFOG00015013247	ENSSFOG00015013274	TRIL (ENSSFOG00015013322)	CREB5 (ENSSFOG00015013343)
P. kingsleyae	MODERN SPECIES	161	SLC6A19 (ENSPKIG00000022277)	slc6a18 (ENSPKIG00000022307)	tert (ENSPKIG00000022342)	nup42 (ENSPKIG00000022387)	klhl7 (ENSPKIG00000022428)	ENSPKIG00000022459	hycc1 (ENSPKIG00000022480) #8	TOMM7 (ENSPKIG00000022505) #10	ENSPKIG00000022527 #14	ENSPKIG00000022553	ENSPKIG00000022576 #14	CDCA7L (ENSPKIG00000022621) #15	sp4 (ENSPKIG00000022661) #18	sp8a (ENSPKIG00000022680) ##19	ITGB8 (ENSPKIG00000022705) #21	macc1 (ENSPKIG00000022743) #22	ENSPKIG00000025637	polr1f (ENSPKIG00000025635) #25	FERD3L (ENSPKIG00000025633) #26	twist1a (ENSPKIG00000025630)	ENSPKIG00000025662	SNX13 (ENSPKIG00000025692) #30	ANKRD28 (ENSPKIG00000025678)	btd (ENSPKIG00000025675)	COLQ (ENSPKIG00000000019)	ENSPKIG00000000042	ENSPKIG00000000045	ENSPKIG00000000055	ENSPKIG00000000065	TRIL (ENSPKIG00000000080)	CREB5 (ENSPKIG00000000103)
Clupeocephala	ANCESTRAL SPECIES	8	ENSGT00940000154807.a.a	ENSGT00940000154896.l	ENSGT00940000158906.i	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00940000166052	ENSGT01030000234575.c.b	ENSGT00940000157583	ENSGT00950000182808.a.a.a.a.b	ENSGT00980000198774	ENSGT00940000182167	ENSGT00390000010355	ENSGT00940000155287	ENSGT00390000013151.a.b #22	ENSGT00940000163281.a	ENSGT00940000163428.b.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT01000000221212	ENSGT00940000157858.i	ENSGT00940000157858.j	ENSGT00940000160267	ENSGT00760000119737	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b
Otomorpha	ANCESTRAL SPECIES	80															ENSGT00940000155287	ENSGT00390000013151.a.b #22	ENSGT00940000163281.a	ENSGT00940000163428.b.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT00760000119737.b	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255	ENSGT00940000164071.b.a	ENSGT00940000158311.b
Clupeiformes	ANCESTRAL SPECIES	615													ENSGT00940000155137.a.a #14	ENSGT00940000162033.a.a #19	ENSGT00940000166052	ENSGT00390000013151.a.b #22	ENSGT00940000163281.a
Atlantic herring	MODERN SPECIES	2	trim71 (ENSCHAG00000018831)	TCAIM (ENSCHAG00000018891)	ABHD5 (ENSCHAG00000019007)	ano10a (ENSCHAG00000019017)	ENSCHAG00000019071	snrka (ENSCHAG00000019094)	ENSCHAG00000019157	pomgnt2 (ENSCHAG00000019167)	ENSCHAG00000019171	ENSCHAG00000019186	zgc:153896 (ENSCHAG00000019191)	ENSCHAG00000019205	ENSCHAG00000019312 #14	sp8b (ENSCHAG00000019360) #19	ENSCHAG00000019381	macc1 (ENSCHAG00000019484) #22	ENSCHAG00000019495	hdac9b (ENSCHAG00000019505)	DEPDC7 (ENSCHAG00000019569)	lin37 (ENSCHAG00000019603)	ENSCHAG00000019610	ENSCHAG00000019618	hsc70 (ENSCHAG00000019635)	ENSCHAG00000020007	rnf183 (ENSCHAG00000020024)	dhx16 (ENSCHAG00000020072)	ppt2a.2 (ENSCHAG00000020768)	ENSCHAG00000020818	ENSCHAG00000020869	ENSCHAG00000021397	AIF1 (ENSCHAG00000021437)
Denticle herring	MODERN SPECIES	15	ENSDCDG00000002597	ENSDCDG00000003999	marchf7 (ENSDCDG00000004004)	LY75 (ENSDCDG00000004011)	PLA2R1 (ENSDCDG00000004042)	ITGB6 (ENSDCDG00000004139)	ENSDCDG00000004756	ENSDCDG00000004814	wdsub1 (ENSDCDG00000004834)	ENSDCDG00000004847	ENSDCDG00000004854	ENSDCDG00000004864	ENSDCDG00000004873	ENSDCDG00000004878 ##19	ENSDCDG00000004894	macc1 (ENSDCDG00000004948) #22	ENSDCDG00000004949	ENSDCDG00000004950	ENSDCDG00000004967 #9	slc6a19b (ENSDCDG00000005047)	ENSDCDG00000008381	rxrbb (ENSDCDG00000008486)	ENSDCDG00000008610	ENSDCDG00000008636	ENSDCDG00000008656	PTP4A3 (ENSDCDG00000008668)	ENSDCDG00000008754	ENSDCDG00000009194	DGAT1 (ENSDCDG00000009258)	SLC45A4 (ENSDCDG00000009376)	ENSDCDG00000009387
Otophysi	ANCESTRAL SPECIES	1	ENSGT00940000154022.a.b	ENSGT00940000177026	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT00940000155739	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000154896.l	ENSGT00940000158906.i	ENSGT00940000164650 #9	ENSGT00940000155137.b.d #14	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00940000166052	ENSGT00390000013151.a.b #22	ENSGT01060000253044	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT00760000119737.b	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255	ENSGT00940000164071.b.a	ENSGT00940000158311.b	ENSGT00940000163268.d.a
Characiphysae	ANCESTRAL SPECIES		ENSGT00390000011619	ENSGT00940000154022.a.b	ENSGT00940000177026	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000154896.l	ENSGT00940000158906.i	ENSGT00940000164650.e #9	ENSGT00940000164650.f #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00940000155287	ENSGT00390000013151.a.b #22	ENSGT01060000253044	ENSGT00950000182908.C.b	ENSGT00940000178869	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT00760000119737.b	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255	ENSGT00940000164071.b.a
Channel catfish	MODERN SPECIES		Ccdc12 (ENSIPUG00000001310)	ENSIPUG00000001341	ENSIPUG00000001383	ENSIPUG00000001405	c4b (ENSIPUG00000001448)	rxrbb (ENSIPUG00000001752)	fhod3 (ENSIPUG00000001787)	Slc6a19 (ENSIPUG00000001817)	SLC6A18 (ENSIPUG00000001855)	ENSIPUG00000001866 #9	ENSIPUG00000001873 #9	ENSIPUG00000001882 #14	DNAH11 (ENSIPUG00000001945) #17	sp8b (ENSIPUG00000002254) #19	ENSIPUG00000002262	macc1 (ENSIPUG00000002290) #22	ENSIPUG00000002297	hbb (ENSIPUG00000002316)	hbae (ENSIPUG00000002404)	twist1 (ENSIPUG00000002432)	hdac9b (ENSIPUG00000002452)	ahr (ENSIPUG00000002501) #32	ankrd28 (ENSIPUG00000002544)	ENSIPUG00000002675	hacl1 (ENSIPUG00000002681)	colq (ENSIPUG00000002698)	plekha8 (ENSIPUG00000002723)	FKBP14 (ENSIPUG00000002766)	ENSIPUG00000002780	chn2 (ENSIPUG00000002792)	CPVL (ENSIPUG00000002845)
Characiphysae_b	ANCESTRAL SPECIES	2											ENSGT00940000155137.b.d #14	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00940000155287	ENSGT00390000013151.a.b #22	ENSGT01060000253044	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT00760000119737.b	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255	ENSGT00940000164071.b.a	ENSGT00940000158311.b
Characoidei	ANCESTRAL SPECIES	329														ENSGT00940000162033.a.b.b ##19	ENSGT00940000166052	ENSGT00390000013151.a.b #22	ENSGT00940000163281.a	ENSGT00940000163428.b.b	ENSGT00940000166341	ENSGT00940000154486.b.a.b #32	ENSGT00950000182908.C.b	ENSGT00940000178869
Mexicana tetra	DUPLICATION
Mexicana tetra	MODERN SPECIES	1	ENSAMXG00000033375	rxrbb (ENSAMXG00000043713)	ENSAMXG00000019697	ENSAMXG00000041420	rapgef5b (ENSAMXG00000043668) #14	ENSAMXG00000030155 #14	DNAH11 (ENSAMXG00000035408) #17	ENSAMXG00000037929 #17	ENSAMXG00000020011 ##19	ENSAMXG00000020021	ENSAMXG00000040485	ENSAMXG00000033099	ENSAMXG00000020045	ENSAMXG00000029162	ENSAMXG00000034431	macc1 (ENSAMXG00000020076) #22	ENSAMXG00000039477	ENSAMXG00000024993	hdac9b (ENSAMXG00000034007)	cxcr3.1 (ENSAMXG00000018422)	COL14A1 (ENSAMXG00000018454)	mrpl13 (ENSAMXG00000041931)	MTBP (ENSAMXG00000018512)	sntb1 (ENSAMXG00000031564)	ENSAMXG00000018554	has2 (ENSAMXG00000018572)	ENSAMXG00000016487	fabp4b (ENSAMXG00000030137)	stmn2a (ENSAMXG00000033761)	upp1 (ENSAMXG00000043246)	ENSAMXG00000038383
Mexicana tetra	MODERN SPECIES	885																macc1 (ENSAMXG00000034551) #22
Red-bellied piranha	MODERN SPECIES	738																macc1 (ENSPNAG00000015846) #22	ENSPNAG00000015854	ENSPNAG00000015873	hdac9b (ENSPNAG00000015973)	ahr1a (ENSPNAG00000016149) #32	ENSPNAG00000016222	ENSPNAG00000003411
Electric eel	MODERN SPECIES	39										rapgef5b (ENSEEEG00000013688) #14	ENSEEEG00000013689 #14	DNAH11 (ENSEEEG00000013712) #17	sp8b (ENSEEEG00000013842) #19	ENSEEEG00000013867	ENSEEEG00000014088	macc1 (ENSEEEG00000014089) #22	ENSEEEG00000014091	twist1b (ENSEEEG00000014093)	hdac9b (ENSEEEG00000014099)	ANKRD28 (ENSEEEG00000014197)	hacl1 (ENSEEEG00000014667)	COLQ (ENSEEEG00000014684)	plekha8 (ENSEEEG00000014685)	fkbp14 (ENSEEEG00000014686)	ENSEEEG00000014687	CHN2 (ENSEEEG00000014689)	ENSEEEG00000014690	cpvl (ENSEEEG00000014691)	CREB5 (ENSEEEG00000014694)	JAZF1 (ENSEEEG00000014697)	ENSEEEG00000014702
Cyprinoidei	ANCESTRAL SPECIES	13	ENSGT00390000010337.B.a.b	ENSGT00940000157621	ENSGT00940000164547.b.b	ENSGT00940000157781	ENSGT01030000235080	ENSGT00940000158322.i	ENSGT00940000166273	ENSGT00940000165573	ENSGT00940000158454	ENSGT00390000011619	ENSGT00940000154022.a.b	ENSGT00940000177026	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT00940000155287	ENSGT00390000013151.a.b #22	ENSGT01060000253044	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT00760000119737.b	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255	ENSGT00940000164071.b.a	ENSGT00940000158311.b	ENSGT00940000163268.d.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	106	ENSGT00940000158454.n	ENSGT00390000011619	ENSGT00940000154022.a.b.h	ENSGT00940000177026.a	ENSGT00940000158338	ENSGT00940000155565.a.a	ENSGT01100000263473.b.a.a.a.a.a.a.b	ENSGT00940000159208.B.a	ENSGT00940000154807.a.a.db	ENSGT00940000154896.l.a.a	ENSGT00940000164650.g.a #9	ENSGT00940000155137.a.a.a.b #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a.b #19	ENSGT00940000155287	ENSGT00390000013151.a.b.i #22	ENSGT00940000163281.a.a	ENSGT00940000163428.b.a.i.a	ENSGT00940000166341.v.b	ENSGT00940000154486.b.a.b.b #32	ENSGT00950000182908.C.b.b	ENSGT00940000178869	ENSGT00940000156802	ENSGT00940000157248.c.a.a	ENSGT00940000157288.n	ENSGT00940000157858.i.b	ENSGT00760000119737.b.a.a	ENSGT01030000234635.a.b.a.a.a	ENSGT00940000159498.a	ENSGT00940000156420.a.a.g	ENSGT00390000003635.h.c
Cyprininae_a	ANCESTRAL SPECIES	6	ENSGT00940000158454.n	ENSGT00390000011619.a	ENSGT00940000154022.a.b.h	ENSGT00940000177026.a	ENSGT00940000158338	ENSGT00940000155565.a.a	ENSGT01100000263473.b.a.a.a.a.a.a.b	ENSGT00940000159208.B.a	ENSGT00940000154807.a.a.db	ENSGT00940000154896.l.a.a	ENSGT00940000164650.g.a #9	ENSGT00940000155137.a.a.a.b #14	ENSGT00940000158880.nb #17	ENSGT00940000162033.a.a.b #19	ENSGT00940000155287	ENSGT00390000013151.a.b.i #22	ENSGT00940000163281.a.a	ENSGT00940000163428.b.a.i.a	ENSGT00940000166341.v.b	ENSGT00940000154486.b.a.b.b #32	ENSGT00950000182908.C.b.b	ENSGT00940000178869	ENSGT00940000156802	ENSGT00940000157248.c.a.a	ENSGT00940000157288.n	ENSGT00940000157858.i.b	ENSGT00760000119737.b.a.a	ENSGT01030000234635.a.b.a.a.a	ENSGT00940000159498.a	ENSGT00940000156420.a.a.g	ENSGT00390000003635.h.c
Golden-line barbel	MODERN SPECIES	221	ccdc12 (ENSSGRG00000014999)	ENSSGRG00000015002	ENSSGRG00000015005	ENSSGRG00000015006	ENSSGRG00000015026	ENSSGRG00000015030	rxrbb (ENSSGRG00000015038)	FHOD3 (ENSSGRG00000015130)	slc6a19b (ENSSGRG00000015150)	ENSSGRG00000015295 #9	ENSSGRG00000015313 #14	ENSSGRG00000015342 #17	ENSSGRG00000015345 #17	sp8b (ENSSGRG00000015346) #19	ENSSGRG00000015364	macc1 (ENSSGRG00000017156) #22	ENSSGRG00000017157	twist1b (ENSSGRG00000017158)	hdac9b (ENSSGRG00000017162)	ahr1a (ENSSGRG00000017174) #32	ANKRD28 (ENSSGRG00000017910)	hacl1 (ENSSGRG00000020067)	plekha8 (ENSSGRG00000020120)	fkbp14 (ENSSGRG00000020246)	ENSSGRG00000020247	CHN2 (ENSSGRG00000020252)	cpvl (ENSSGRG00000020303)	CREB5 (ENSSGRG00000020355)	JAZF1 (ENSSGRG00000020357)	tax1bp1b (ENSSGRG00000020360)	hibadhb (ENSSGRG00000020361)
Common carp reference	MODERN SPECIES	47	ENSCCRG00000051667	ENSCCRG00000065362	c4b (ENSCCRG00000004026)	ENSCCRG00000072820	ENSCCRG00000076897	ENSCCRG00000055645	ENSCCRG00000028906	rxrbb (ENSCCRG00000054882)	ENSCCRG00000004830	slc6a19b (ENSCCRG00000050108)	ENSCCRG00000029523	ENSCCRG00000034703 #14	DNAH11 (ENSCCRG00000037634) #17	sp8b (ENSCCRG00000060103) #19	ENSCCRG00000058546	macc1 (ENSCCRG00000021557) #22	ENSCCRG00000077612	hdac9b (ENSCCRG00000027316)	twist1b (ENSCCRG00000056709)	ahr1a (ENSCCRG00000021084) #32	ANKRD28 (ENSCCRG00000018690)	ENSCCRG00000018651	hacl1 (ENSCCRG00000018645)	COLQ (ENSCCRG00000053136)	plekha8 (ENSCCRG00000018609)	fkbp14 (ENSCCRG00000073955)	ENSCCRG00000018596	CHN2 (ENSCCRG00000053278)	cpvl (ENSCCRG00000008840)	CREB5 (ENSCCRG00000055556)	JAZF1 (ENSCCRG00000064899)
Goldfish	MODERN SPECIES	7	c4b (ENSCARG00000031632)	ENSCARG00000031571	ENSCARG00000031565	ENSCARG00000031560	ENSCARG00000031557	ENSCARG00000031553	ENSCARG00000031549	ENSCARG00000031541	rxrbb (ENSCARG00000031149)	FHOD3 (ENSCARG00000030737)	slc6a19b (ENSCARG00000030516)	ENSCARG00000030271 #9	ENSCARG00000030240 #14	sp8b (ENSCARG00000028485) #19	ENSCARG00000016909	macc1 (ENSCARG00000016586) #22	ENSCARG00000016578	twist1b (ENSCARG00000016569)	hdac9b (ENSCARG00000016508)	ahr1a (ENSCARG00000015717) #32	ANKRD28 (ENSCARG00000009382)	hacl1 (ENSCARG00000008333)	COLQ (ENSCARG00000008262)	plekha8 (ENSCARG00000008198)	fkbp14 (ENSCARG00000008170)	ENSCARG00000008165	CHN2 (ENSCARG00000008078)	cpvl (ENSCARG00000007941)	CREB5 (ENSCARG00000007899)	JAZF1 (ENSCARG00000007879)	tax1bp1b (ENSCARG00000007852)
Cyprininae	ANCESTRAL SPECIES	184	ENSGT00940000158322.i.l	ENSGT00940000166273.c	ENSGT00940000165573.a	ENSGT00940000158454.m	ENSGT00940000154022.a.b.g	ENSGT00940000177026.b	ENSGT00390000008061.j.b.c.b.b	ENSGT01000000216736	ENSGT00940000159208.B.b	ENSGT00940000154807.a.a.eb	ENSGT00940000154896.l.a.b	ENSGT00940000164650.g.b #9	ENSGT00940000155137.a.a.a.a #14	ENSGT00940000162033.a.a.a #19	ENSGT00940000166052	ENSGT00390000013151.a.b.j #22	ENSGT00940000163281.a.b	ENSGT00940000163428.b.a.i.b	ENSGT00940000166341.v.a	ENSGT00940000154486.b.a.b.a #32	ENSGT00950000182908.C.b.a	ENSGT00940000157248.c.a.b	ENSGT00940000157288.m	ENSGT00940000157858.i.a	ENSGT00760000119737.b.a.b	ENSGT01030000234635.a.b.a.a.b	ENSGT00940000159498.b	ENSGT00940000156420.a.a.h	ENSGT00390000003635.h.d	ENSGT00950000183025.b.a.`b.b	ENSGT00940000155255.cb
Cyprininae_a	ANCESTRAL SPECIES	36	ENSGT00940000154022.a.b.g	ENSGT00940000177026.b	ENSGT00390000008061.j.b.c.b.b	ENSGT01000000216736	ENSGT00940000159208.B.b	ENSGT00940000154807.a.a.eb	ENSGT00940000154896.l.a.b	ENSGT00940000164650.g.b #9	ENSGT00940000155137.a.a.a.a #14	ENSGT00940000164650.h #9	ENSGT00940000155137.b.d #14	ENSGT00940000155137.a.a.b #14	ENSGT00940000158880.ob #17	ENSGT00940000162033.a.a.a #19	ENSGT00940000166052	ENSGT00390000013151.a.b.j #22	ENSGT00940000163281.a.b	ENSGT00940000163428.b.a.i.b	ENSGT00940000166341.v.a	ENSGT00940000154486.b.a.b.a #32	ENSGT00950000182908.C.b.a	ENSGT00940000157248.c.a.b	ENSGT00940000157288.m	ENSGT00940000157858.i.a	ENSGT01030000234635.a.b.a.a.b	ENSGT00940000159498.b	ENSGT00940000156420.a.a.h	ENSGT00390000003635.h.d	ENSGT00950000183025.b.a.`b.b	ENSGT00940000155255.cb	ENSGT00940000164071.b.a.b
Golden-line barbel	MODERN SPECIES	407																macc1 (ENSSGRG00000055107) #22	ENSSGRG00000055106	twist1b (ENSSGRG00000055105)	hdac9b (ENSSGRG00000055104)	ENSSGRG00000055103 #32	ENSSGRG00000055062	ENSSGRG00000055039	plekha8 (ENSSGRG00000055038)	fkbp14 (ENSSGRG00000055037)	CHN2 (ENSSGRG00000055032)	cpvl (ENSSGRG00000055031)	CREB5 (ENSSGRG00000055030)	ENSSGRG00000055028	JAZF1 (ENSSGRG00000055027)	tax1bp1b (ENSSGRG00000055025)	hibadhb (ENSSGRG00000055023)
Common carp reference	MODERN SPECIES	2	ENSCCRG00000051666	ENSCCRG00000004884	ENSCCRG00000073333	ENSCCRG00000057871	ENSCCRG00000063303	ENSCCRG00000051668	rxrbb (ENSCCRG00000028908)	ENSCCRG00000050237	slc6a19b (ENSCCRG00000029545)	ENSCCRG00000029527 #9	ENSCCRG00000063722 #14	ENSCCRG00000080234 #17	ENSCCRG00000082667 #17	sp8b (ENSCCRG00000021559) #19	ENSCCRG00000070247	macc1 (ENSCCRG00000043252) #22	ENSCCRG00000043247	twist1b (ENSCCRG00000073937)	hdac9b (ENSCCRG00000021353)	ahr1a (ENSCCRG00000041947) #32	ENSCCRG00000019294	ENSCCRG00000030998	ENSCCRG00000018624	plekha8 (ENSCCRG00000066528)	fkbp14 (ENSCCRG00000073005)	CHN2 (ENSCCRG00000057495)	cpvl (ENSCCRG00000008246)	CREB5 (ENSCCRG00000054780)	JAZF1 (ENSCCRG00000080168)	tax1bp1b (ENSCCRG00000056000)	hibadhb (ENSCCRG00000012416)
Goldfish	MODERN SPECIES	35	ccdc12 (ENSCARG00000052291)	ENSCARG00000052252	ENSCARG00000052222	ENSCARG00000052211	ENSCARG00000052197	rxrbb (ENSCARG00000051979)	FHOD3 (ENSCARG00000051396)	slc6a19b (ENSCARG00000050684)	ENSCARG00000050385 #9	rapgef5b (ENSCARG00000050346) #14	sox4b (ENSCARG00000050335)	ENSCARG00000050327	ENSCARG00000050256 #14	sp8b (ENSCARG00000050203) #19	ENSCARG00000048354	macc1 (ENSCARG00000048210) #22	twist1b (ENSCARG00000048182)	hdac9b (ENSCARG00000048101)	ANKRD28 (ENSCARG00000039700)	plekha8 (ENSCARG00000039034)	fkbp14 (ENSCARG00000039016)	ENSCARG00000039008	CHN2 (ENSCARG00000037973)	cpvl (ENSCARG00000037316)	ENSCARG00000037247	CREB5 (ENSCARG00000037074)	JAZF1 (ENSCARG00000037004)	tax1bp1b (ENSCARG00000036964)	hibadhb (ENSCARG00000036861)	hoxa13b (ENSCARG00000036849)	hoxa11b (ENSCARG00000036840)
Zebrafish	MODERN SPECIES	7	zgc:174935 (ENSDARG00000079255)	si:dkey-87o1.2 (ENSDARG00000095796)	them4 (ENSDARG00000061621)	ENSDARG00000087195	ENSDARG00000035797	rxrbb (ENSDARG00000002006)	FHOD3 (ENSDARG00000061904)	slc6a19b (ENSDARG00000056719)	ENSDARG00000056750 #9	ENSDARG00000094999	rapgef5b (ENSDARG00000074307) #14	DNAH11 (ENSDARG00000094282) #17	ENSDARG00000077384 #17	sp8b (ENSDARG00000056666) #19	ENSDARG00000021787	macc1 (ENSDARG00000040717) #22	ENSDARG00000090140	twist1b (ENSDARG00000076010)	hdac9b (ENSDARG00000056642)	ahr1a (ENSDARG00000020046) #32	ANKRD28 (ENSDARG00000009023)	c16h2orf66 (ENSDARG00000116758)	hacl1 (ENSDARG00000020529)	COLQ (ENSDARG00000019692)	plekha8 (ENSDARG00000040698)	fkbp14 (ENSDARG00000040695)	ENSDARG00000095615	CHN2 (ENSDARG00000011845)	cpvl (ENSDARG00000056480)	CREB5 (ENSDARG00000070536)	JAZF1 (ENSDARG00000056793)
Euteleosteomorpha	ANCESTRAL SPECIES	65	ENSGT00970000198403	ENSGT00390000003781.e.a	ENSGT00390000013846.a.b	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT00940000155739	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000154896.l	ENSGT00940000158906.i	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00940000166052	ENSGT00390000013151.a.b #22	ENSGT00940000163281.a	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00940000154486.b.a.b #32	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT01000000221212	ENSGT00940000157858.i	ENSGT00760000119737	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00940000171365
Protacanthopterygii	ANCESTRAL SPECIES	1	ENSGT00940000157833.h.b	ENSGT00970000198403	ENSGT00390000003781.e.a	ENSGT00390000013846.a.b	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT01100000263473.a.b.h.b	ENSGT01100000263473.b.a.a.a	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000158906.i	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000162033.a.a #19	ENSGT00940000166052	ENSGT00390000013151.a.b #22	ENSGT00940000163281.a	ENSGT00940000163428.b.a.a	ENSGT00940000166341	ENSGT00940000154486.b.a.b #32	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT01000000221212	ENSGT00940000157858.i	ENSGT00760000119737	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00390000003635.g.d
Salmoninae	ANCESTRAL SPECIES	2	ENSGT00940000160576.f	ENSGT00390000013846.a.b.h.a.a	ENSGT00940000158338	ENSGT00940000155565.a.g	ENSGT00940000155739.yb.b.a	ENSGT00950000183411	ENSGT01100000263473.a.b.h.b.l	ENSGT01100000263473.b.a.a.a	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000154896.l.y.a	ENSGT00940000164650.l #9	ENSGT00940000155137.a.a #14	ENSGT00940000162033.a.a #19	ENSGT00940000166052	ENSGT00390000013151.a.b #22	ENSGT00940000163281.a.c	ENSGT00940000163428.b.a.a	ENSGT00940000166341	ENSGT00940000154486.b.a.b #32	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a.c.b	ENSGT00940000157288	ENSGT01000000221212	ENSGT00940000157858.i	ENSGT00760000119737	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00390000003635.g.d
Salmoninae_a	ANCESTRAL SPECIES	53	ENSGT00940000160576.f	ENSGT00940000158338	ENSGT00940000155565.a.g	ENSGT00940000155739.yb.b.a	ENSGT00950000183411	ENSGT01100000263473.a.b.h.b.l	ENSGT01100000263473.b.a.a.a	ENSGT00940000159208.B.f.b	ENSGT00940000159208.B.f.a.b	ENSGT00940000154807.a.a	ENSGT00940000154896.l.y.a	ENSGT00940000164650.l #9	ENSGT00940000155137.a.a #14	ENSGT00940000162033.a.a #19	ENSGT00940000166052	ENSGT00390000013151.a.b #22	ENSGT00940000163281.a.c	ENSGT00940000163428.b.a.a	ENSGT00940000166341	ENSGT00940000154486.b.a.b #32	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a.c.b	ENSGT00940000157288	ENSGT00940000157858.i.i	ENSGT01000000221212	ENSGT00940000157858.i.j	ENSGT00760000119737	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a
Salmo	ANCESTRAL SPECIES	87				ENSGT00950000183411	ENSGT01100000263473.b.a.a.a.c.b	ENSGT00940000159208.B.f.b	ENSGT00940000154807.a.a	ENSGT00940000154896.l.y.a	ENSGT00940000154896.l.y.b.b.a.b	ENSGT00940000164650.k.a.a #9	ENSGT00940000155137.a.a.h #14	ENSGT00940000162033.a.a.d #19	ENSGT00940000161340 #20	ENSGT00940000162033.a.a.c #19	ENSGT00940000166052	ENSGT00390000013151.a.b #22	ENSGT00940000163281.a.d	ENSGT00940000163428.b.a.a	ENSGT00940000166341	ENSGT00940000154486.b.a.b #32	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a.d	ENSGT00940000157288.t	ENSGT00940000157858.i.j	ENSGT00760000119737	ENSGT00940000157288.s	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a.f	ENSGT00940000156420.b
Atlantic salmon	DUPLICATION
Atlantic salmon	MODERN SPECIES	24	ENSSSAG00000040922	ENSSSAG00000106674	ENSSSAG00000106908	ENSSSAG00000007739	ENSSSAG00000007707	rxrbb (ENSSSAG00000113417)	ENSSSAG00000088583	ENSSSAG00000118052	slc6a19b (ENSSSAG00000065673)	slc6a19b (ENSSSAG00000104230)	ENSSSAG00000082267 #9	ENSSSAG00000094949 #14	ENSSSAG00000106143	sp8b (ENSSSAG00000106905) #19	ENSSSAG00000043709	macc1 (ENSSSAG00000094887) #22	ENSSSAG00000115967	twst2 (ENSSSAG00000005235)	ENSSSAG00000086502	hdac9b (ENSSSAG00000096709)	ahr1a (ENSSSAG00000084403) #32	ENSSSAG00000100848	ENSSSAG00000120064	ENSSSAG00000093744	ENSSSAG00000082393	hacl1 (ENSSSAG00000058006)	ENSSSAG00000114748	ENSSSAG00000103025	plekha8 (ENSSSAG00000087781)	ENSSSAG00000046042	ENSSSAG00000053505
Atlantic salmon	MODERN SPECIES	11	ENSSSAG00000113973	ENSSSAG00000105834	ENSSSAG00000004083	ENSSSAG00000114696	ENSSSAG00000004060	ENSSSAG00000117583	ENSSSAG00000004047	rxrbb (ENSSSAG00000004009)	ENSSSAG00000110512	slc6a19b (ENSSSAG00000119940)	slc6a19b (ENSSSAG00000107844)	ENSSSAG00000110181 #9	ENSSSAG00000090477	sp8b (ENSSSAG00000061738) #19	ABCB5 (ENSSSAG00000060932) #20	macc1 (ENSSSAG00000083782) #22	twst2 (ENSSSAG00000094926)	ENSSSAG00000117057	ENSSSAG00000112961	hdac9b (ENSSSAG00000102432)	ENSSSAG00000003783 #32	ENSSSAG00000088450	ENSSSAG00000096834	hacl1 (ENSSSAG00000093636)	ENSSSAG00000083007	plekha8 (ENSSSAG00000004260)	ENSSSAG00000121332	CHN2 (ENSSSAG00000042862)	cpvl (ENSSSAG00000061125)	CREB5 (ENSSSAG00000120433)	ENSSSAG00000068078
River trout	DUPLICATION
River trout	MODERN SPECIES	22	ENSSTUG00000009878	ENSSTUG00000009886	csnk2b (ENSSTUG00000009894)	ENSSTUG00000009916	ENSSTUG00000009932	ENSSTUG00000009958	ENSSTUG00000010015	c4b (ENSSTUG00000010060)	ENSSTUG00000011317	ENSSTUG00000011321	rxrbb (ENSSTUG00000011327)	FHOD3 (ENSSTUG00000011478)	slc6a19b (ENSSTUG00000012068)	sp8b (ENSSTUG00000012537) #19	ENSSTUG00000012855	macc1 (ENSSTUG00000027819) #22	ENSSTUG00000027827	ENSSTUG00000027834	hdac9b (ENSSTUG00000027839)	ahr1a (ENSSTUG00000027876) #32	ENSSTUG00000027938	ENSSTUG00000028516	ENSSTUG00000028529	ENSSTUG00000028999	flad1 (ENSSTUG00000029011)	SHC1 (ENSSTUG00000029117)	lenep (ENSSTUG00000029443)	ENSSTUG00000029448	ENSSTUG00000029468	s100a11 (ENSSTUG00000029505)	ENSSTUG00000029509
River trout	MODERN SPECIES	147													ENSSTUG00000031308	sp8b (ENSSTUG00000031298) #19	ENSSTUG00000029364	macc1 (ENSSTUG00000029313) #22	ENSSTUG00000029294	ENSSTUG00000029288	ENSSTUG00000029277	hdac9b (ENSSTUG00000029262)	ENSSTUG00000029251	ahr1a (ENSSTUG00000029214) #32	ANKRD28 (ENSSTUG00000024939)	ENSSTUG00000024811	ENSSTUG00000024788	ENSSTUG00000024782
Oncorhynchus	ANCESTRAL SPECIES	50	ENSGT00390000003781.e.a	ENSGT00390000013846.a.b.h.a.a	ENSGT00940000158338	ENSGT00940000155565.a.g	ENSGT00940000155565.a.h	ENSGT00940000155739.yb.b.a	ENSGT01100000263473.a.b.h.b.l	ENSGT01100000263473.b.a.a.a	ENSGT00940000159208.B.f.a.b	ENSGT00940000154807.a.a	ENSGT00940000154896.l.y.a	ENSGT00940000164650.l #9	ENSGT00940000155137.a.a #14	ENSGT00940000162033.a.a #19	ENSGT00940000166052	ENSGT00390000013151.a.b #22	ENSGT00940000163281.a.c	ENSGT00940000163428.b.a.a	ENSGT00940000166341.f	ENSGT00940000154486.b.a.b #32	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a.c.b	ENSGT00940000157288	ENSGT01000000221212	ENSGT00940000157858.i.i	ENSGT00760000119737	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a.c	ENSGT00390000003368
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	11	ENSOMYG00000002803	ENSOMYG00000069016	ENSOMYG00000002748	ENSOMYG00000054545	c4b (ENSOMYG00000055517)	ENSOMYG00000067648	ENSOMYG00000025106	rxrbb (ENSOMYG00000001564)	ENSOMYG00000071819	slc6a19b (ENSOMYG00000028946)	ENSOMYG00000056599 #9	ENSOMYG00000063603 #14	ENSOMYG00000072543	sp8b (ENSOMYG00000073802) #19	ENSOMYG00000066537	macc1 (ENSOMYG00000064450) #22	ENSOMYG00000060436	ENSOMYG00000056407	hdac9b (ENSOMYG00000077335)	ahr1a (ENSOMYG00000036618) #32	ENSOMYG00000054585	ENSOMYG00000070229	ENSOMYG00000077428	ENSOMYG00000061937	ENSOMYG00000070369	ENSOMYG00000057446	ENSOMYG00000070573	ENSOMYG00000052871	ENSOMYG00000048461	hacl1 (ENSOMYG00000056364)	plekha8 (ENSOMYG00000001004)
Rainbow trout	MODERN SPECIES	21	ENSOMYG00000011057	ENSOMYG00000059512	ENSOMYG00000076613	ENSOMYG00000010894	ENSOMYG00000063570	rxrbb (ENSOMYG00000010829)	ENSOMYG00000001638	ENSOMYG00000067753	slc6a19b (ENSOMYG00000001677)	ENSOMYG00000053985 #9	ENSOMYG00000050040	ENSOMYG00000052698 #14	sp8b (ENSOMYG00000010791) #19	ENSOMYG00000064044	ENSOMYG00000004633	macc1 (ENSOMYG00000001168) #22	ENSOMYG00000061693	ENSOMYG00000001144	hdac9b (ENSOMYG00000054264)	ahr1a (ENSOMYG00000001067) #32	ENSOMYG00000071501	ENSOMYG00000068122	ENSOMYG00000069809	ENSOMYG00000062830	ENSOMYG00000071125	ENSOMYG00000074458	ENSOMYG00000064764	ENSOMYG00000064337	ENSOMYG00000048577	ENSOMYG00000058213	ENSOMYG00000059375
Oncorhynchus_a	ANCESTRAL SPECIES	137	ENSGT00940000161897.b.b.b	ENSGT00390000004215.a.b.b.c.b.d.e	ENSGT00390000008932.m	ENSGT00390000008932.n.f.a.b	ENSGT00940000156775.f	ENSGT00940000157833.h.b.e	ENSGT00390000003781.e.a	ENSGT00390000013846.a.b.h.a.b	ENSGT00940000159208.B.f.a.b	ENSGT00940000154807.a.a	ENSGT00940000154896.l.y.a	ENSGT00940000164650.l #9	ENSGT00940000155137.a.a #14	ENSGT00940000162033.a.a #19	ENSGT00940000166052	ENSGT00390000013151.a.b #22	ENSGT00940000163281.a.c	ENSGT00940000163428.b.a.a	ENSGT00940000166341.f
Chinook salmon	MODERN SPECIES	22	TRAK1 (ENSOTSG00005015764)	ENSOTSG00005015763	enpp2 (ENSOTSG00005015762)	CCN3 (ENSOTSG00005015760)	mal2 (ENSOTSG00005015758)	COLEC10 (ENSOTSG00005015757)	csnk2a1 (ENSOTSG00005015755)	PON1 (ENSOTSG00005015753)	kcnk5b (ENSOTSG00005015752)	csnk2b (ENSOTSG00005015748)	ENSOTSG00005015746	ENSOTSG00005015745	ENSOTSG00005015743	sp8b (ENSOTSG00005015742) #19	ENSOTSG00005000461	macc1 (ENSOTSG00005000374) #22	ENSOTSG00005000369	twist1a (ENSOTSG00005000366)	ANKRD28 (ENSOTSG00005000358)	ENSOTSG00005000354	ENSOTSG00005000352	ENSOTSG00005000350	ENSOTSG00005000349	ENSOTSG00005000346	hacl1 (ENSOTSG00005000344)	COLQ (ENSOTSG00005000342)	plekha8 (ENSOTSG00005000337)	fkbp14 (ENSOTSG00005000331)	ENSOTSG00005000327	ENSOTSG00005000326	CHN2 (ENSOTSG00005000314)
Coho salmon	DUPLICATION
Coho salmon	MODERN SPECIES	31	AIF1 (ENSOKIG00005045634)	SLC44A4 (ENSOKIG00005045676)	ENSOKIG00005045824	c4b (ENSOKIG00005045965)	ENSOKIG00005046759	rxrbb (ENSOKIG00005046785)	FHOD3 (ENSOKIG00005046855)	slc6a19b (ENSOKIG00005046972)	ENSOKIG00005047592 #9	ENSOKIG00005047642 #14	ENSOKIG00005047754	ENSOKIG00005047756	ENSOKIG00005047762	sp8b (ENSOKIG00005047774) #19	ENSOKIG00005048046	macc1 (ENSOKIG00005049429) #22	ENSOKIG00005049434	ENSOKIG00005049443	hdac9b (ENSOKIG00005049459)	ahr1a (ENSOKIG00005049511) #32	ANKRD28 (ENSOKIG00005049730)	hacl1 (ENSOKIG00005050053)	plekha8 (ENSOKIG00005050128)	ENSOKIG00005050140	fkbp14 (ENSOKIG00005050143)	ENSOKIG00005050149	ENSOKIG00005050152	CHN2 (ENSOKIG00005050170)	cpvl (ENSOKIG00005050225)	CREB5 (ENSOKIG00005050277)	ENSOKIG00005050281
Coho salmon	MODERN SPECIES	1367															ENSOKIG00005043852	macc1 (ENSOKIG00005043965) #22	ENSOKIG00005043973	twist1a (ENSOKIG00005043980)	hdac9b (ENSOKIG00005043999)	ahr1a (ENSOKIG00005044071) #32
Huchen	MODERN SPECIES	5238														sp8b (ENSHHUG00000027135) #19	ENSHHUG00000025783	macc1 (ENSHHUG00000025740) #22	ENSHHUG00000025726
Northern pike	MODERN SPECIES	19	ENSELUG00000028102	ENSELUG00000006235	ENSELUG00000006322	c4b (ENSELUG00000000210)	ENSELUG00000028285	rxrbb (ENSELUG00000006678)	FHOD3 (ENSELUG00000006796)	SLC6A18 (ENSELUG00000006864)	ENSELUG00000006880 #9	ENSELUG00000006893 #9	ENSELUG00000006936 #14	ENSELUG00000025177	ENSELUG00000034021	sp8b (ENSELUG00000006950) #19	ENSELUG00000006975	macc1 (ENSELUG00000006998) #22	ENSELUG00000007010	twist1a (ENSELUG00000007017)	hdac9b (ENSELUG00000007075)	ahr1a (ENSELUG00000007172) #32	ENSELUG00000027964	ANKRD28 (ENSELUG00000007253)	hacl1 (ENSELUG00000007356)	COLQ (ENSELUG00000007408)	plekha8 (ENSELUG00000007445)	fkbp14 (ENSELUG00000033081)	ENSELUG00000007457	CHN2 (ENSELUG00000000267)	cpvl (ENSELUG00000007617)	CREB5 (ENSELUG00000007691)	jazf1a (ENSELUG00000000282)
Acanthomorphata	ANCESTRAL SPECIES	31	ENSGT00940000157833.h.b	ENSGT00970000198403	ENSGT00390000003781.e.a	ENSGT00390000013846.a.b	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT00940000155739	ENSGT01100000263473.b.a.a.a	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000158906.i	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00390000013151.a.b #22	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00940000171365	ENSGT00940000156420.b	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255
Euacanthomorphacea	ANCESTRAL SPECIES		ENSGT00940000155739	ENSGT01100000263473.b.a.a.a	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000154896.k.a	ENSGT00940000154896.k.b	ENSGT00940000158906.j	ENSGT00940000154807.b	ENSGT00940000160212	ENSGT00940000154896.l	ENSGT00940000158906.i	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00390000013151.a.b #22	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00940000171365	ENSGT00940000156420.b	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255
Percomorphaceae	ANCESTRAL SPECIES		ENSGT00970000198403	ENSGT00390000003781.e.a	ENSGT00390000013846.a.b	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT00940000155739	ENSGT01100000263473.b.a.a.a	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000154896.l	ENSGT00940000158906.i	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00390000013151.a.b #22	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00940000171365	ENSGT00940000156420.b	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255
Percomorphaceae_B	ANCESTRAL SPECIES	1	ENSGT00970000198403	ENSGT00390000003781.e.a	ENSGT00390000013846.a.b	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT00940000155739	ENSGT01100000263473.b.a.a.a	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000154896.l	ENSGT00940000158906.i	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00390000013151.a.b #22	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00940000171365	ENSGT00940000156420.b	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255
Percomorphaceae_C	ANCESTRAL SPECIES	2	ENSGT00390000003781.e.a	ENSGT00390000013846.a.b	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT00940000155739	ENSGT01100000263473.b.a.a.a	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000154807.b	ENSGT00940000154896.l	ENSGT00940000158906.i	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00390000013151.a.b #22	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255	ENSGT00940000164071.b.a	ENSGT00940000158311.b
Percomorphaceae_D	ANCESTRAL SPECIES	2	ENSGT00970000198403	ENSGT00390000003781.e.a	ENSGT00390000013846.a.b	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT00940000155739	ENSGT01100000263473.b.a.a.a	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000154896.l	ENSGT00940000158906.i	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00390000013151.a.b #22	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255	ENSGT00940000164071.b.a	ENSGT00940000158311.b
Carangaria	ANCESTRAL SPECIES	1	ENSGT00970000198403	ENSGT00390000003781.e.a	ENSGT00390000013846.a.b	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT00940000155739	ENSGT01100000263473.b.a.a.a	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000154896.l	ENSGT00940000158906.i	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00390000013151.a.b #22	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255	ENSGT00940000164071.b.a	ENSGT00940000158311.b
Pleuronectoidei	ANCESTRAL SPECIES	3	ENSGT00940000156775.f	ENSGT00940000157833.h.b	ENSGT00390000003781.e.a	ENSGT00390000013846.a.b	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT00940000155739	ENSGT01100000263473.b.a.a.a	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000158906.i	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00390000013151.a.b #22	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255	ENSGT00940000164071.b.a	ENSGT00940000158311.b
Turbot	MODERN SPECIES		ENSSMAG00000027713	ENSSMAG00000000370	ENSSMAG00000000343	ENSSMAG00000000325	ENSSMAG00000029108	c4b (ENSSMAG00000000287)	ENSSMAG00000000281	rxrbb (ENSSMAG00000000277)	ENSSMAG00000000234	ENSSMAG00000000224	ENSSMAG00000035029 #9	ENSSMAG00000036567	ENSSMAG00000000208 #14	DNAH11 (ENSSMAG00000000170) #17	sp8b (ENSSMAG00000000167) #19	macc1 (ENSSMAG00000000165) #22	twist1b (ENSSMAG00000000162)	hdac9b (ENSSMAG00000000130)	ANKRD28 (ENSSMAG00000000101)	hacl1 (ENSSMAG00000000099)	COLQ (ENSSMAG00000000096)	plekha8 (ENSSMAG00000000090)	fkbp14 (ENSSMAG00000000089)	CHN2 (ENSSMAG00000000085)	cpvl (ENSSMAG00000000083)	CREB5 (ENSSMAG00000000081)	JAZF1 (ENSSMAG00000000079)	tax1bp1b (ENSSMAG00000000076)	hibadhb (ENSSMAG00000000075)	hoxa13b (ENSSMAG00000000073)	hoxa11b (ENSSMAG00000000072)
Tongue sole	MODERN SPECIES	4	ENSCSEG00000005078	ENSCSEG00000005074	CLPTM1L (ENSCSEG00000005062)	MRS2 (ENSCSEG00000005059)	ENSCSEG00000005055	CPQ (ENSCSEG00000005044)	dscc1 (ENSCSEG00000005030)	mrpl13 (ENSCSEG00000005024)	FHOD3 (ENSCSEG00000005007)	slc6a19b (ENSCSEG00000004999)	ENSCSEG00000004998 #9	ENSCSEG00000004997 #9	ENSCSEG00000004986 #14	ENSCSEG00000004949 #17	sp8b (ENSCSEG00000004940) #19	macc1 (ENSCSEG00000004928) #22	twist1b (ENSCSEG00000004923)	hdac9b (ENSCSEG00000004911)	ANKRD28 (ENSCSEG00000004894)	hacl1 (ENSCSEG00000004885)	COLQ (ENSCSEG00000004880)	plekha8 (ENSCSEG00000004876)	fkbp14 (ENSCSEG00000004873)	CHN2 (ENSCSEG00000004861)	cpvl (ENSCSEG00000004857)	CREB5 (ENSCSEG00000004842)	JAZF1 (ENSCSEG00000004836)	tax1bp1b (ENSCSEG00000004813)	hibadhb (ENSCSEG00000004801)	hoxa13b (ENSCSEG00000004792)	hoxa11b (ENSCSEG00000004788)
Carangaria_A	ANCESTRAL SPECIES	9	ENSGT00970000198403	ENSGT00390000003781.e.a	ENSGT00390000013846.a.b	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT00940000155739	ENSGT01100000263473.b.a.a.a	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000154896.l	ENSGT00940000158906.i	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00390000013151.a.b #22	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182908.C.b	ENSGT00940000156802.q	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255	ENSGT00940000164071.b.a	ENSGT00940000158311.b
Barramundi perch	MODERN SPECIES	17	ENSLCAG00010008744	ENSLCAG00010008756	c4b (ENSLCAG00010008831)	ENSLCAG00010009007	ENSLCAG00010009011	ENSLCAG00010009012	rxrbb (ENSLCAG00010009026)	FHOD3 (ENSLCAG00010009053)	slc6a19b (ENSLCAG00010009062)	SLC6A18 (ENSLCAG00010009083)	ENSLCAG00010009103 #9	ENSLCAG00010009105 #9	RAPGEF5 (ENSLCAG00010009115) #14	DNAH11 (ENSLCAG00010009391) #17	sp8b (ENSLCAG00010010178) #19	macc1 (ENSLCAG00010010184) #22	twist1b (ENSLCAG00010010187)	hdac9b (ENSLCAG00010010199)	ANKRD28 (ENSLCAG00010010440)	hacl1 (ENSLCAG00010011623)	COLQ (ENSLCAG00010011685)	plekha8 (ENSLCAG00010011690)	fkbp14 (ENSLCAG00010011697)	CHN2 (ENSLCAG00010011703)	cpvl (ENSLCAG00010011717)	CREB5 (ENSLCAG00010011737)	JAZF1 (ENSLCAG00010011748)	tax1bp1b (ENSLCAG00010011753)	hibadhb (ENSLCAG00010011766)	hoxa13b (ENSLCAG00010011777)	hoxa11b (ENSLCAG00010011784)
Seriola	ANCESTRAL SPECIES	56				ENSGT00940000158338	ENSGT00940000155565.a	ENSGT00940000155739	ENSGT01100000263473.b.a.a.a	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000154896.l	ENSGT00940000158906.i	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00390000013151.a.b #22	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182908.C.b	ENSGT00940000156802.q	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255	ENSGT00940000164071.b.a	ENSGT00940000158311.b
Greater amberjack	MODERN SPECIES	250				ENSSDUG00000002470	ENSSDUG00000002351	c4b (ENSSDUG00000002239)	ENSSDUG00000002219	rxrbb (ENSSDUG00000002150)	FHOD3 (ENSSDUG00000002070)	slc6a19b (ENSSDUG00000002036)	SLC6A18 (ENSSDUG00000002006)	ENSSDUG00000001992 #9	RAPGEF5 (ENSSDUG00000001955) #14	DNAH11 (ENSSDUG00000001754) #17	sp8b (ENSSDUG00000001699) #19	macc1 (ENSSDUG00000001682) #22	twist1b (ENSSDUG00000001670)	hdac9b (ENSSDUG00000001605)	ANKRD28 (ENSSDUG00000001509)	hacl1 (ENSSDUG00000001427)	COLQ (ENSSDUG00000001385)	plekha8 (ENSSDUG00000001363)	fkbp14 (ENSSDUG00000001345)	CHN2 (ENSSDUG00000001322)	cpvl (ENSSDUG00000001270)	CREB5 (ENSSDUG00000001228)	JAZF1 (ENSSDUG00000001189)	tax1bp1b (ENSSDUG00000001177)	hibadhb (ENSSDUG00000001170)	hoxa13b (ENSSDUG00000001137)	hoxa11b (ENSSDUG00000001124)
Yellowtail amberjack	MODERN SPECIES	3089				ENSSLDG00000023903	ENSSLDG00000023883	c4b (ENSSLDG00000023838)	ENSSLDG00000023830	rxrbb (ENSSLDG00000023441)	FHOD3 (ENSSLDG00000023374)	ENSSLDG00000023368	SLC6A18 (ENSSLDG00000023350)	ENSSLDG00000023341 #9	RAPGEF5 (ENSSLDG00000023324) #14	DNAH11 (ENSSLDG00000023225) #17	sp8b (ENSSLDG00000023208) #19	macc1 (ENSSLDG00000023203) #22	twist1b (ENSSLDG00000023197)	hdac9b (ENSSLDG00000023188)
Anabantaria	ANCESTRAL SPECIES	2	ENSGT00390000008932.n	ENSGT00940000156775.f	ENSGT00940000157833.h.b	ENSGT00390000003781.e.a	ENSGT00390000013846.a.b	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT00940000155739	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000158906.i	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00390000013151.a.b #22	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255	ENSGT00940000164071.b.a	ENSGT00940000158311.b
Anabantoidei	ANCESTRAL SPECIES	3	ENSGT00390000008932.m	ENSGT00390000008932.n	ENSGT00940000156775.f	ENSGT00940000157833.h.b	ENSGT00390000003781.e.a	ENSGT00390000013846.a.b	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT00940000155739	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00390000013151.a.b #22	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255	ENSGT00940000164071.b.a	ENSGT00940000158311.b
Climbing perch	MODERN SPECIES	7	ENSATEG00000008338	ENSATEG00000028249	ENSATEG00000029052	ENSATEG00000008239	ENSATEG00000008144	ENSATEG00000008129	ENSATEG00000008074	ENSATEG00000008038	c4b (ENSATEG00000007852)	rxrbb (ENSATEG00000007788)	ENSATEG00000007774	ENSATEG00000007695 #9	ENSATEG00000007586 #14	DNAH11 (ENSATEG00000006948) #17	sp8b (ENSATEG00000006843) #19	macc1 (ENSATEG00000006829) #22	twist1b (ENSATEG00000006779)	hdac9b (ENSATEG00000006720)	ANKRD28 (ENSATEG00000006576)	hacl1 (ENSATEG00000006565)	COLQ (ENSATEG00000025574)	plekha8 (ENSATEG00000006488)	fkbp14 (ENSATEG00000006455)	CHN2 (ENSATEG00000006387)	cpvl (ENSATEG00000006320)	CREB5 (ENSATEG00000006306)	JAZF1 (ENSATEG00000006282)	tax1bp1b (ENSATEG00000006270)	hibadhb (ENSATEG00000006226)	hoxa13b (ENSATEG00000006127)	hoxa11b (ENSATEG00000006040)
Siamese fighting fish	MODERN SPECIES	7	ENSBSLG00000025981	pon1 (ENSBSLG00000025971)	kcnk5b (ENSBSLG00000025942)	ENSBSLG00000025778	csnk2b (ENSBSLG00000025759)	AIF1 (ENSBSLG00000025749)	ENSBSLG00000025736	ENSBSLG00000025731	rxrbb (ENSBSLG00000025583)	FHOD3 (ENSBSLG00000025484)	SLC6A19 (ENSBSLG00000025442)	ENSBSLG00000025413 #9	ENSBSLG00000025395 #14	DNAH11 (ENSBSLG00000024801) #17	sp8b (ENSBSLG00000024778) #19	macc1 (ENSBSLG00000024774) #22	twist1b (ENSBSLG00000024765)	hdac9b (ENSBSLG00000024733)	ANKRD28 (ENSBSLG00000023994)	hacl1 (ENSBSLG00000023602)	COLQ (ENSBSLG00000023554)	plekha8 (ENSBSLG00000023540)	fkbp14 (ENSBSLG00000023475)	CHN2 (ENSBSLG00000023238)	cpvl (ENSBSLG00000023204)	CREB5 (ENSBSLG00000023199)	JAZF1 (ENSBSLG00000023176)	tax1bp1b (ENSBSLG00000023142)	hibadhb (ENSBSLG00000023113)	hoxa13b (ENSBSLG00000023107)	hoxa11b (ENSBSLG00000023103)
Zig-zag eel	MODERN SPECIES	7	ENSMAMG00000015299	ENSMAMG00000015285	ENSMAMG00000015138	ENSMAMG00000015069	ENSMAMG00000015044	ENSMAMG00000014967	ENSMAMG00000014882	c4b (ENSMAMG00000014759)	rxrbb (ENSMAMG00000014664)	ENSMAMG00000014726	ENSMAMG00000014586	ENSMAMG00000014575 #9	ENSMAMG00000014490 #14	DNAH11 (ENSMAMG00000014344) #17	sp8b (ENSMAMG00000014328) #19	macc1 (ENSMAMG00000014319) #22	twist1b (ENSMAMG00000014267)	hdac9b (ENSMAMG00000014205)	ANKRD28 (ENSMAMG00000014112)	hacl1 (ENSMAMG00000014027)	COLQ (ENSMAMG00000013993)	plekha8 (ENSMAMG00000013833)	fkbp14 (ENSMAMG00000024896)	CHN2 (ENSMAMG00000013775)	cpvl (ENSMAMG00000013747)	CREB5 (ENSMAMG00000013658)	JAZF1 (ENSMAMG00000013626)	tax1bp1b (ENSMAMG00000013585)	hibadhb (ENSMAMG00000013563)	hoxa13b (ENSMAMG00000013489)	hoxa11b (ENSMAMG00000013483)
Eupercaria	ANCESTRAL SPECIES	1	ENSGT00390000003781.e.a	ENSGT00390000013846.a.b	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT00940000155739	ENSGT01100000263473.b.a.a.a	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000154807.b	ENSGT00940000154896.l	ENSGT00940000158906.i	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00390000013151.a.b #22	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255	ENSGT00940000164071.b.a	ENSGT00940000158311.b
Eupecaria_A	ANCESTRAL SPECIES	2	ENSGT00390000003781.e.a	ENSGT00390000013846.a.b	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT00940000155739	ENSGT01100000263473.b.a.a.a	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000154807.b	ENSGT00940000154896.l	ENSGT00940000158906.i	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00390000013151.a.b #22	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255	ENSGT00940000164071.b.a	ENSGT00940000158311.b
Ballan wrasse	MODERN SPECIES	101	csnk2b (ENSLBEG00000006492)	AIF1 (ENSLBEG00000006616)	ENSLBEG00000007014	ENSLBEG00000007076	c4b (ENSLBEG00000007249)	ENSLBEG00000007578	rxrbb (ENSLBEG00000007629)	FHOD3 (ENSLBEG00000007679)	ENSLBEG00000007721	ENSLBEG00000007744	slc6a19b (ENSLBEG00000007772)	ENSLBEG00000007896 #9	RAPGEF5 (ENSLBEG00000008014) #14	DNAH11 (ENSLBEG00000008100) #17	sp8b (ENSLBEG00000008311) #19	macc1 (ENSLBEG00000008327) #22	twist1b (ENSLBEG00000008337)	hdac9b (ENSLBEG00000008357)	ANKRD28 (ENSLBEG00000008448)	hacl1 (ENSLBEG00000008593)	COLQ (ENSLBEG00000008704)	plekha8 (ENSLBEG00000008747)	fkbp14 (ENSLBEG00000008801)	CHN2 (ENSLBEG00000008860)	cpvl (ENSLBEG00000008956)	CREB5 (ENSLBEG00000009016)	JAZF1 (ENSLBEG00000009100)	tax1bp1b (ENSLBEG00000009134)	hibadhb (ENSLBEG00000009177)	hoxa13b (ENSLBEG00000009213)	hoxa11b (ENSLBEG00000009228)
Eupecaria_B	ANCESTRAL SPECIES	4	ENSGT00940000157833.h.b	ENSGT00390000003781.e.a	ENSGT00390000013846.a.b	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT00940000155739	ENSGT01100000263473.b.a.a.a	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000154896.l	ENSGT00940000158906.i	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00390000013151.a.b #22	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255	ENSGT00940000164071.b.a	ENSGT00940000158311.b
Eupecaria_C	ANCESTRAL SPECIES	2	ENSGT00940000157833.h.b	ENSGT00390000003781.e.a	ENSGT00390000013846.a.b	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT00940000155739	ENSGT01100000263473.b.a.a.a	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000154896.l	ENSGT00940000158906.i	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00390000013151.a.b #22	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255	ENSGT00940000164071.b.a	ENSGT00940000158311.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	2	ENSGT00940000157833.h.b	ENSGT00390000003781.e.a	ENSGT00390000013846.a.b	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT00940000155739	ENSGT01100000263473.b.a.a.a	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000154896.l	ENSGT00940000158906.i	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00390000013151.a.b #22	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255	ENSGT00940000164071.b.a	ENSGT00940000158311.b
Large yellow croaker	MODERN SPECIES	484	pon1 (ENSLCRG00005007830)	kcnk5b (ENSLCRG00005007828)	ENSLCRG00005007811	csnk2b (ENSLCRG00005007761)	AIF1 (ENSLCRG00005007760)	ENSLCRG00005007756	c4b (ENSLCRG00005007562)	ENSLCRG00005007556	rxrbb (ENSLCRG00005007535)	FHOD3 (ENSLCRG00005007496)	slc6a19b (ENSLCRG00005006846)	ENSLCRG00005006825 #9	RAPGEF5 (ENSLCRG00005006822) #14	DNAH11 (ENSLCRG00005005753) #17	sp8b (ENSLCRG00005005728) #19	macc1 (ENSLCRG00005005727) #22	twist1b (ENSLCRG00005005726)	hdac9b (ENSLCRG00005005721)	ANKRD28 (ENSLCRG00005004018)	hacl1 (ENSLCRG00005002619)	COLQ (ENSLCRG00005002579)	plekha8 (ENSLCRG00005002558)	fkbp14 (ENSLCRG00005002552)	CHN2 (ENSLCRG00005001253)	cpvl (ENSLCRG00005000690)	CREB5 (ENSLCRG00005000631)	JAZF1 (ENSLCRG00005009772)	tax1bp1b (ENSLCRG00005009770)	hibadhb (ENSLCRG00005009720)	hoxa13b (ENSLCRG00005009719)	hoxa11b (ENSLCRG00005009718)
European seabass	MODERN SPECIES	6	ENSDLAG00005011272	ENSDLAG00005031105	ENSDLAG00005011157	ENSDLAG00005011012	ENSDLAG00005010975	c4b (ENSDLAG00005009457)	ENSDLAG00005009291	rxrbb (ENSDLAG00005009170)	ENSDLAG00005007838	slc6a19b (ENSDLAG00005006402)	ENSDLAG00005006119	ENSDLAG00005006103 #9	ENSDLAG00005005661 #14	DNAH11 (ENSDLAG00005004445) #17	sp8b (ENSDLAG00005032957) #19	macc1 (ENSDLAG00005019153) #22	twist1b (ENSDLAG00005027630)	hdac9b (ENSDLAG00005019085)	ENSDLAG00005017437	hacl1 (ENSDLAG00005017349)	plekha8 (ENSDLAG00005017284)	fkbp14 (ENSDLAG00005027101)	CHN2 (ENSDLAG00005016963)	cpvl (ENSDLAG00005016207)	CREB5 (ENSDLAG00005016181)	JAZF1 (ENSDLAG00005016165)	tax1bp1b (ENSDLAG00005016113)	hibadhb (ENSDLAG00005016058)	hoxa13b (ENSDLAG00005016052)	hoxa11b (ENSDLAG00005034243)	ENSDLAG00005016047
Gilthead seabream	MODERN SPECIES	8	ENSSAUG00010002958	csnk2b (ENSSAUG00010004796)	AIF1 (ENSSAUG00010004801)	ENSSAUG00010004811	ENSSAUG00010004823	c4b (ENSSAUG00010004862)	ENSSAUG00010005770	rxrbb (ENSSAUG00010005778)	FHOD3 (ENSSAUG00010005799)	slc6a19b (ENSSAUG00010005859)	ENSSAUG00010006138	ENSSAUG00010006258 #9	RAPGEF5 (ENSSAUG00010006261) #14	DNAH11 (ENSSAUG00010006386) #17	sp8b (ENSSAUG00010007105) #19	macc1 (ENSSAUG00010007107) #22	twist1b (ENSSAUG00010007108)	hdac9b (ENSSAUG00010007109)	ANKRD28 (ENSSAUG00010007114)	hacl1 (ENSSAUG00010007288)	COLQ (ENSSAUG00010007419)	plekha8 (ENSSAUG00010007424)	fkbp14 (ENSSAUG00010007466)	CHN2 (ENSSAUG00010007468)	cpvl (ENSSAUG00010007474)	CREB5 (ENSSAUG00010007486)	JAZF1 (ENSSAUG00010007488)	tax1bp1b (ENSSAUG00010007490)	hibadhb (ENSSAUG00010007493)	hoxa13b (ENSSAUG00010007579)	hoxa11b (ENSSAUG00010007580)
Perciformes	ANCESTRAL SPECIES	3	ENSGT00940000157833.h.b	ENSGT00390000003781.e.a	ENSGT00390000013846.a.b	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT00940000155739	ENSGT01100000263473.b.a.a.a	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000154896.l	ENSGT00940000158906.i	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00390000013151.a.b #22	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255	ENSGT00940000164071.b.a	ENSGT00940000158311.b
Perciformes_a	ANCESTRAL SPECIES	3	ENSGT00390000003781.e.a	ENSGT00390000013846.a.b	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT00940000155739	ENSGT01100000263473.b.a.a.a	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000154896.l	ENSGT00940000158906.i	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000154076.A	ENSGT00940000162033.a.a #19	ENSGT00390000013151.a.b #22	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255	ENSGT00940000164071.b.a	ENSGT00940000158311.b
Pike perch	MODERN SPECIES	15	csnk2b (ENSSLUG00000000417)	AIF1 (ENSSLUG00000000424)	ENSSLUG00000000433	ENSSLUG00000000458	c4b (ENSSLUG00000000530)	rxrbb (ENSSLUG00000000716)	FHOD3 (ENSSLUG00000000736)	slc6a19b (ENSSLUG00000000764)	SLC6A18 (ENSSLUG00000000785)	ENSSLUG00000000796 #9	RAPGEF5 (ENSSLUG00000000802) #14	ENSSLUG00000000810 #17	ENSSLUG00000000813	ENSSLUG00000000817 #17	sp8b (ENSSLUG00000000819) #19	macc1 (ENSSLUG00000000822) #22	twist1b (ENSSLUG00000000839)	hdac9b (ENSSLUG00000000844)	ANKRD28 (ENSSLUG00000001010)	hacl1 (ENSSLUG00000001647)	COLQ (ENSSLUG00000001725)	plekha8 (ENSSLUG00000001749)	fkbp14 (ENSSLUG00000001771)	CHN2 (ENSSLUG00000001817)	cpvl (ENSSLUG00000001939)	CREB5 (ENSSLUG00000002018)	JAZF1 (ENSSLUG00000002021)	tax1bp1b (ENSSLUG00000002026)	hibadhb (ENSSLUG00000002035)	hoxa13b (ENSSLUG00000002053)	hoxa11b (ENSSLUG00000002066)
Channel bull blenny	MODERN SPECIES	7	ENSCGOG00000005874	ENSCGOG00000005866	c4b (ENSCGOG00000005730)	ENSCGOG00000005713	rxrbb (ENSCGOG00000005542)	FHOD3 (ENSCGOG00000005296)	slc6a19b (ENSCGOG00000004964)	ENSCGOG00000004937 #9	RAPGEF5 (ENSCGOG00000004915) #14	ENSCGOG00000004896 #17	ENSCGOG00000004891 #17	ENSCGOG00000004888 #17	ENSCGOG00000004881	ENSCGOG00000004876 #17	sp8b (ENSCGOG00000004874) #19	macc1 (ENSCGOG00000004860) #22	twist1b (ENSCGOG00000004852)	hdac9b (ENSCGOG00000004836)	ANKRD28 (ENSCGOG00000002342)	hacl1 (ENSCGOG00000002111)	COLQ (ENSCGOG00000002085)	plekha8 (ENSCGOG00000002029)	fkbp14 (ENSCGOG00000002025)	ENSCGOG00000002023	CHN2 (ENSCGOG00000001775)	cpvl (ENSCGOG00000001746)	CREB5 (ENSCGOG00000001700)	JAZF1 (ENSCGOG00000001692)	tax1bp1b (ENSCGOG00000001686)	hibadhb (ENSCGOG00000001639)	hoxa13b (ENSCGOG00000001628)
Cottioidei	ANCESTRAL SPECIES	7	ENSGT00940000157833.h.b	ENSGT00390000003781.e.a	ENSGT00390000013846.a.b	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT00940000155739	ENSGT01100000263473.b.a.a.a	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000154896.l	ENSGT00940000158906.i	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00390000013151.a.b #22	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255	ENSGT00940000164071.b.a	ENSGT00940000158311.b
Lumpfish	MODERN SPECIES	7	ENSCLMG00005004042	ENSCLMG00005004044	AIF1 (ENSCLMG00005004049)	ENSCLMG00005004067	c4b (ENSCLMG00005004142)	ENSCLMG00005004842	rxrbb (ENSCLMG00005004847)	FHOD3 (ENSCLMG00005004940)	ENSCLMG00005004945	slc6a19b (ENSCLMG00005004950)	SLC6A18 (ENSCLMG00005004957)	ENSCLMG00005004963 #9	ENSCLMG00005004975 #14	DNAH11 (ENSCLMG00005004983) #17	sp8b (ENSCLMG00005005022) #19	macc1 (ENSCLMG00005005023) #22	twist1b (ENSCLMG00005005024)	hdac9b (ENSCLMG00005005026)	ANKRD28 (ENSCLMG00005005042)	hacl1 (ENSCLMG00005007962)	COLQ (ENSCLMG00005008200)	plekha8 (ENSCLMG00005008203)	fkbp14 (ENSCLMG00005008206)	CHN2 (ENSCLMG00005008207)	cpvl (ENSCLMG00005008209)	CREB5 (ENSCLMG00005008226)	JAZF1 (ENSCLMG00005008322)	tax1bp1b (ENSCLMG00005008325)	hibadhb (ENSCLMG00005008326)	hoxa13b (ENSCLMG00005008335)	hoxa11b (ENSCLMG00005008337)
Stickleback	MODERN SPECIES	19	kcnk5b (ENSGACG00000007871)	ENSGACG00000007879	ENSGACG00000007893	csnk2b (ENSGACG00000007897)	ENSGACG00000007916	ENSGACG00000007921	c4b (ENSGACG00000007933)	ENSGACG00000007971	rxrbb (ENSGACG00000007982)	FHOD3 (ENSGACG00000007994)	SLC6A18 (ENSGACG00000008011)	ENSGACG00000008027 #9	RAPGEF5 (ENSGACG00000008032) #14	DNAH11 (ENSGACG00000008036) #17	sp8b (ENSGACG00000008062) #19	macc1 (ENSGACG00000008067) #22	twist1b (ENSGACG00000008070)	ENSGACG00000008075	hdac9b (ENSGACG00000008076)	ANKRD28 (ENSGACG00000008084)	hacl1 (ENSGACG00000008098)	COLQ (ENSGACG00000008106)	plekha8 (ENSGACG00000008123)	fkbp14 (ENSGACG00000008133)	CHN2 (ENSGACG00000008146)	cpvl (ENSGACG00000008172)	cpvl (ENSGACG00000008182)	CREB5 (ENSGACG00000008212)	JAZF1 (ENSGACG00000008216)	tax1bp1b (ENSGACG00000008221)	hibadhb (ENSGACG00000008229)
Tetraodontidae	ANCESTRAL SPECIES	14	ENSGT00390000008932.n	ENSGT00940000156775.f	ENSGT00940000157833.h.b	ENSGT00390000003781.e.a	ENSGT00390000013846.a.b	ENSGT00940000182043	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT00940000155739.fb	ENSGT01100000263473.b.a.a.a	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000162033.a.a #19	ENSGT00390000013151.a.b #22	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255	ENSGT00940000164071.b.a	ENSGT00940000158311.b
Tetraodon	MODERN SPECIES	23	pon1 (ENSTNIG00000018455)	kcnk5b (ENSTNIG00000018454)	ENSTNIG00000018453	csnk2b (ENSTNIG00000018452)	AIF1 (ENSTNIG00000018451)	ENSTNIG00000000031	ENSTNIG00000018450	ENSTNIG00000018449	ENSTNIG00000018448	ENSTNIG00000018447	rxrbb (ENSTNIG00000018446)	FHOD3 (ENSTNIG00000018445)	ENSTNIG00000018444 #9	RAPGEF5 (ENSTNIG00000018443) #14	sp8b (ENSTNIG00000018442) #19	macc1 (ENSTNIG00000018441) #22	twist1b (ENSTNIG00000018440)	hdac9b (ENSTNIG00000018439)	ANKRD28 (ENSTNIG00000018438)	hacl1 (ENSTNIG00000018437)	COLQ (ENSTNIG00000018436)	plekha8 (ENSTNIG00000018435)	fkbp14 (ENSTNIG00000018434)	CHN2 (ENSTNIG00000018433)	cpvl (ENSTNIG00000018432)	CREB5 (ENSTNIG00000018431)	JAZF1 (ENSTNIG00000018430)	tax1bp1b (ENSTNIG00000018429)	hibadhb (ENSTNIG00000018428)	hoxa13b (ENSTNIG00000001781)	hoxa11b (ENSTNIG00000000494)
Fugu	MODERN SPECIES	19	PON1 (ENSTRUG00000016206)	ENSTRUG00000028685	kcnk5b (ENSTRUG00000016202)	ENSTRUG00000016155	csnk2b (ENSTRUG00000022619)	aif1 (ENSTRUG00000016138)	ENSTRUG00000029353	ENSTRUG00000026046	c4 (ENSTRUG00000015929)	ENSTRUG00000022460	rxrbb (ENSTRUG00000015903)	FHOD3 (ENSTRUG00000015843)	ENSTRUG00000015834 #9	RAPGEF5 (ENSTRUG00000015817) #14	sp8b (ENSTRUG00000015810) #19	macc1 (ENSTRUG00000015804) #22	twist1 (ENSTRUG00000015797)	ENSTRUG00000028716	hdac9b (ENSTRUG00000015773)	ANKRD28 (ENSTRUG00000015695)	hacl1 (ENSTRUG00000015648)	COLQ (ENSTRUG00000015630)	plekha8 (ENSTRUG00000015600)	fkbp14 (ENSTRUG00000015596)	CHN2 (ENSTRUG00000015557)	cpvl (ENSTRUG00000015515)	CREB5 (ENSTRUG00000015448)	JAZF1 (ENSTRUG00000018220)	tax1bp1b (ENSTRUG00000015394)	hibadhb (ENSTRUG00000015370)	ENSTRUG00000015364
Ovalentaria	ANCESTRAL SPECIES	3	ENSGT00390000013846.a.b	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT01030000235045	ENSGT00940000155739	ENSGT00950000183411	ENSGT01100000263473.b.a.a.a	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000154896.l	ENSGT00940000158906.i	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00390000013151.a.b #22	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00940000171365	ENSGT00940000156420.b	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255
Atherinomorphae	ANCESTRAL SPECIES		ENSGT00940000157833.h.b	ENSGT00390000003781.e.a	ENSGT00390000013846.a.b	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT01030000235045	ENSGT00940000155739	ENSGT00950000183411	ENSGT01100000263473.b.a.a.a	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00390000013151.a.b #22	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255	ENSGT00940000164071.b.a	ENSGT00940000158311.b
Cyprinodontiformes	ANCESTRAL SPECIES		ENSGT00940000157833.h.b	ENSGT00390000003781.e.a	ENSGT00390000013846.a.b	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT01030000235045	ENSGT00940000155739	ENSGT00950000183411	ENSGT01100000263473.b.a.a.a	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00390000013151.a.b #22	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255	ENSGT00940000164071.b.a	ENSGT00940000158311.b
Aplocheiloidei	ANCESTRAL SPECIES	2	ENSGT00940000156775.f	ENSGT00940000157833.h.b	ENSGT00390000003781.e.a	ENSGT00390000013846.a.b	ENSGT00940000158338	ENSGT00940000155565.a.c	ENSGT00940000155565.a.d	ENSGT00940000155739	ENSGT01100000263473.b.a.a.a	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00390000013151.a.b #22	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255	ENSGT00940000164071.b.a	ENSGT00940000158311.b
Mangrove rivulus	MODERN SPECIES	92	csnk2b (ENSKMAG00000016801)	AIF1 (ENSKMAG00000016746)	ENSKMAG00000016720	ENSKMAG00000016705	c4b (ENSKMAG00000016664)	c4b (ENSKMAG00000016480)	ENSKMAG00000016410	rxrbb (ENSKMAG00000016360)	FHOD3 (ENSKMAG00000016169)	ENSKMAG00000016123 #9	ENSKMAG00000016115 #9	RAPGEF5 (ENSKMAG00000016078) #14	DNAH11 (ENSKMAG00000015924) #17	ENSKMAG00000015867 #17	sp8b (ENSKMAG00000015834) #19	macc1 (ENSKMAG00000015806) #22	ENSKMAG00000015779	twist1b (ENSKMAG00000015768)	hdac9b (ENSKMAG00000015707)	ANKRD28 (ENSKMAG00000015591)	hacl1 (ENSKMAG00000015483)	COLQ (ENSKMAG00000015426)	plekha8 (ENSKMAG00000015362)	fkbp14 (ENSKMAG00000015321)	CHN2 (ENSKMAG00000015268)	cpvl (ENSKMAG00000015213)	CREB5 (ENSKMAG00000015158)	JAZF1 (ENSKMAG00000015126)	tax1bp1b (ENSKMAG00000015099)	hibadhb (ENSKMAG00000015068)	hoxa13b (ENSKMAG00000015035)
Turquoise killifish	MODERN SPECIES	1614	ENSNFUG00015002881	CSNK2A1 (ENSNFUG00015002556)	ENSNFUG00015002468	pon1 (ENSNFUG00015002461)	KCNK5B (ENSNFUG00015002456)	ENSNFUG00015002451	ENSNFUG00015002305	CK2B (ENSNFUG00015002253)	AIF1 (ENSNFUG00015002243)	ENSNFUG00015002227	RXRBB (ENSNFUG00015002175)	FHOD3 (ENSNFUG00015001811)	ENSNFUG00015001687 #9	ENSNFUG00015001653 #14	ENSNFUG00015001462	macc1 (ENSNFUG00015001453) #22	TWIST1 (ENSNFUG00015001445)	hdac9b (ENSNFUG00015001430)	ENSNFUG00015001412	ANKRD28 (ENSNFUG00015001085)	ENSNFUG00015000965	hacl1 (ENSNFUG00015000945)	COLQ (ENSNFUG00015000936)	PLEKHA8 (ENSNFUG00015000887)	FKBP14 (ENSNFUG00015000869)	CHN2 (ENSNFUG00015000744)	ccdc12 (ENSNFUG00015000660)	TMEM104 (ENSNFUG00015000650)	ENSNFUG00015000641	GRIN2CA (ENSNFUG00015000576)	ENSNFUG00015000521
Cyprinodontoidei	ANCESTRAL SPECIES		ENSGT00940000157833.h.b	ENSGT00390000003781.e.a	ENSGT00390000013846.a.b	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT01030000235045	ENSGT00940000155739	ENSGT00950000183411	ENSGT01100000263473.b.a.a.a	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00390000013151.a.b #22	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255	ENSGT00940000164071.b.a	ENSGT00940000158311.b
Poeciliinae	ANCESTRAL SPECIES		ENSGT00940000156775.f	ENSGT00940000157833.h.b	ENSGT00390000003781.e.a	ENSGT00390000013846.a.b	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT01030000235045	ENSGT00940000155739	ENSGT01100000263473.b.a.a.a	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00390000013151.a.b #22	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT01030000234635.a.b.a.a.e	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255	ENSGT00940000164071.b.a	ENSGT00940000158311.b
Poecilia	ANCESTRAL SPECIES		ENSGT00940000156775.f	ENSGT00940000157833.h.b	ENSGT00390000003781.e.a	ENSGT00390000013846.a.b	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT01030000235045	ENSGT00940000155739	ENSGT01100000263473.b.a.a.a	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00390000013151.a.b #22	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT01030000234635.a.b.a.a.e	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255	ENSGT00940000164071.b.a	ENSGT00940000158311.b
NAME_6	ANCESTRAL SPECIES	33	ENSGT00390000008932.n	ENSGT00940000156775.f	ENSGT00940000157833.h.b	ENSGT00390000003781.e.a	ENSGT00390000013846.a.b	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT01030000235045	ENSGT01100000265641	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00390000013151.a.b #22	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182908.C.b.d	ENSGT00950000182908.C.b.c	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT01030000234635.a.b.a.a.e	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255	ENSGT00940000164071.b.a
Amazon molly	MODERN SPECIES	503						ENSPFOG00000010771	ENSPFOG00000010703	c4b (ENSPFOG00000010249)	ENSPFOG00000010232	rxrbb (ENSPFOG00000010127)	FHOD3 (ENSPFOG00000009943)	ENSPFOG00000009892 #9	ENSPFOG00000009714 #14	DNAH11 (ENSPFOG00000008061) #17	sp8b (ENSPFOG00000007998) #19	macc1 (ENSPFOG00000007954) #22	twist1b (ENSPFOG00000019887)	hdac9b (ENSPFOG00000007880)	ANKRD28 (ENSPFOG00000006560)	hacl1 (ENSPFOG00000006084)	COLQ (ENSPFOG00000022473)	ANKRD28 (ENSPFOG00000005715)	hacl1 (ENSPFOG00000005527)	plekha8 (ENSPFOG00000005412)	fkbp14 (ENSPFOG00000005032)	CHN2 (ENSPFOG00000005070)	cpvl (ENSPFOG00000004633)	CREB5 (ENSPFOG00000004378)	JAZF1 (ENSPFOG00000004320)	tax1bp1b (ENSPFOG00000003952)	hibadhb (ENSPFOG00000003856)
Sailfin molly	MODERN SPECIES	714													ENSPLAG00000002073 #14	ENSPLAG00000002120 #17	sp8b (ENSPLAG00000002158) #19	macc1 (ENSPLAG00000002169) #22	twist1b (ENSPLAG00000002183)	hdac9b (ENSPLAG00000002207)	ANKRD28 (ENSPLAG00000002231)	ANKRD28 (ENSPLAG00000002245)	hacl1 (ENSPLAG00000002269)
Guppy	MODERN SPECIES	446	csnk2b (ENSPREG00000002723)	AIF1 (ENSPREG00000002713)	ENSPREG00000002680	ENSPREG00000002596	ENSPREG00000002578	c4b (ENSPREG00000002552)	ENSPREG00000002533	ENSPREG00000002522	rxrbb (ENSPREG00000002487)	FHOD3 (ENSPREG00000002448)	ENSPREG00000002406 #9	ENSPREG00000002369 #14	DNAH11 (ENSPREG00000002163) #17	ENSPREG00000002101 #17	sp8b (ENSPREG00000002075) #19	macc1 (ENSPREG00000002060) #22	twist1b (ENSPREG00000001986)	hdac9b (ENSPREG00000001897)	ANKRD28 (ENSPREG00000001859)	hacl1 (ENSPREG00000001764)	COLQ (ENSPREG00000001751)	plekha8 (ENSPREG00000001692)	fkbp14 (ENSPREG00000001666)	CHN2 (ENSPREG00000001605)	cpvl (ENSPREG00000001566)	CREB5 (ENSPREG00000001516)	JAZF1 (ENSPREG00000001479)	tax1bp1b (ENSPREG00000001460)	hibadhb (ENSPREG00000001412)	hoxa13b (ENSPREG00000001397)	hoxa11b (ENSPREG00000001364)
Platyfish	MODERN SPECIES	17	kcnk5b (ENSXMAG00000010369)	ENSXMAG00000010314	csnk2b (ENSXMAG00000010310)	AIF1 (ENSXMAG00000010299)	ENSXMAG00000015016	ENSXMAG00000015072	c4b (ENSXMAG00000015081)	ENSXMAG00000015119	rxrbb (ENSXMAG00000015121)	FHOD3 (ENSXMAG00000015156)	ENSXMAG00000015166 #9	RAPGEF5 (ENSXMAG00000015176) #14	ENSXMAG00000021144 #17	ENSXMAG00000015189 #17	sp8b (ENSXMAG00000023631) #19	macc1 (ENSXMAG00000010861) #22	twist1b (ENSXMAG00000019787)	hdac9b (ENSXMAG00000013839)	ANKRD28 (ENSXMAG00000013843)	hacl1 (ENSXMAG00000013857)	COLQ (ENSXMAG00000013868)	plekha8 (ENSXMAG00000013874)	fkbp14 (ENSXMAG00000013879)	CHN2 (ENSXMAG00000013882)	cpvl (ENSXMAG00000013886)	CREB5 (ENSXMAG00000013891)	JAZF1 (ENSXMAG00000013895)	tax1bp1b (ENSXMAG00000013896)	hibadhb (ENSXMAG00000013899)	hoxa13b (ENSXMAG00000026913)	hoxa11b (ENSXMAG00000013903)
NAME_4	ANCESTRAL SPECIES	1	ENSGT00940000156775.f	ENSGT00940000157833.h.b	ENSGT00390000003781.e.a	ENSGT00390000013846.a.b	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT00940000155739	ENSGT00950000183411	ENSGT01100000263473.b.a.a.a	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00390000013151.a.b #22	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255	ENSGT00940000164071.b.a	ENSGT00940000158311.b
Sheepshead minnow	MODERN SPECIES	114							phf14 (ENSCVAG00000013092)	ENSCVAG00000013043	ENSCVAG00000013033 #9	ENSCVAG00000012964 #14	ENSCVAG00000012868 #17	ENSCVAG00000012735 #17	ENSCVAG00000012710	ENSCVAG00000000330 #17	sp8b (ENSCVAG00000012665) #19	macc1 (ENSCVAG00000012657) #22	twist1b (ENSCVAG00000012651)	hdac9b (ENSCVAG00000012568)	ANKRD28 (ENSCVAG00000012490)	hacl1 (ENSCVAG00000012437)	COLQ (ENSCVAG00000012396)	plekha8 (ENSCVAG00000012388)	fkbp14 (ENSCVAG00000012339)	CHN2 (ENSCVAG00000012319)	cpvl (ENSCVAG00000012267)	CREB5 (ENSCVAG00000012236)	JAZF1 (ENSCVAG00000012204)	tax1bp1b (ENSCVAG00000012188)	hibadhb (ENSCVAG00000012164)	hoxa13b (ENSCVAG00000012158)	hoxa11b (ENSCVAG00000012150)
Mummichog	MODERN SPECIES	2197	csnk2b (ENSFHEG00000013658)	AIF1 (ENSFHEG00000013917)	ENSFHEG00000013934	ENSFHEG00000013958	c4b (ENSFHEG00000014065)	c4b (ENSFHEG00000014157)	ENSFHEG00000014165	ENSFHEG00000014179	rxrbb (ENSFHEG00000014238)	FHOD3 (ENSFHEG00000014267)	ENSFHEG00000014284 #9	RAPGEF5 (ENSFHEG00000014322) #14	DNAH11 (ENSFHEG00000014485) #17	ENSFHEG00000014634 #17	sp8b (ENSFHEG00000014695) #19	macc1 (ENSFHEG00000014702) #22	twist1b (ENSFHEG00000014722)	hdac9b (ENSFHEG00000014754)	ANKRD28 (ENSFHEG00000014860)	hacl1 (ENSFHEG00000014867)	COLQ (ENSFHEG00000000612)	plekha8 (ENSFHEG00000014916)	fkbp14 (ENSFHEG00000014927)	CHN2 (ENSFHEG00000014974)	cpvl (ENSFHEG00000015030)	CREB5 (ENSFHEG00000015078)	JAZF1 (ENSFHEG00000015101)	tax1bp1b (ENSFHEG00000015152)	hibadhb (ENSFHEG00000015184)	hoxa13b (ENSFHEG00000000840)	hoxa11b (ENSFHEG00000015193)
Oryzias	ANCESTRAL SPECIES	2	ENSGT00390000008932.n	ENSGT00940000156775.f	ENSGT00940000157833.h.b	ENSGT00390000003781.e.a	ENSGT00390000013846.a.b	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT00940000155739	ENSGT01100000263473.b.a.a.a	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00390000013151.a.b #22	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255	ENSGT00940000164071.b.a	ENSGT00940000158311.b
Oryzias_a	ANCESTRAL SPECIES	9	ENSGT00940000156775.f	ENSGT00940000157833.h.b	ENSGT00390000003781.e.a	ENSGT00390000013846.a.b	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT00940000155739.pb	ENSGT00940000155739.qb	ENSGT01100000263473.b.a.a.a	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00390000013151.a.b #22	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255	ENSGT00940000164071.b.a	ENSGT00940000158311.b
Chinese medaka	MODERN SPECIES	493										ENSOSIG00000020682	rxrbb (ENSOSIG00000020687)	ENSOSIG00000020699	ENSOSIG00000020778 #9	RAPGEF5 (ENSOSIG00000020793) #14	sp8b (ENSOSIG00000020966) #19	macc1 (ENSOSIG00000020967) #22	twist1b (ENSOSIG00000020969)	hdac9b (ENSOSIG00000020970)	ANKRD28 (ENSOSIG00000021208)	hacl1 (ENSOSIG00000023206)	COLQ (ENSOSIG00000023271)	plekha8 (ENSOSIG00000023282)	fkbp14 (ENSOSIG00000023284)	CHN2 (ENSOSIG00000023311)	cpvl (ENSOSIG00000023352)	CREB5 (ENSOSIG00000023360)	JAZF1 (ENSOSIG00000023362)	tax1bp1b (ENSOSIG00000023368)	hibadhb (ENSOSIG00000023371)	hoxa13b (ENSOSIG00000023372)	hoxa11b (ENSOSIG00000023374)
Japanese Medaka HdrR	MODERN SPECIES	7	ENSORLG00000006905	c4b (ENSORLG00000006939)	c4b (ENSORLG00000006961)	ENSORLG00000006987	rxrbb (ENSORLG00000007020)	FHOD3 (ENSORLG00000007046)	ENSORLG00000026013	ENSORLG00000027813	ENSORLG00000021856 #9	ENSORLG00000007067 #9	RAPGEF5 (ENSORLG00000007079) #14	ENSORLG00000029580 #17	ENSORLG00000007223 #17	ENSORLG00000021870	sp8b (ENSORLG00000007242) #19	macc1 (ENSORLG00000007248) #22	twist1b (ENSORLG00000007251)	hdac9b (ENSORLG00000007268)	ANKRD28 (ENSORLG00000007319)	ENSORLG00000007334	hacl1 (ENSORLG00000007343)	COLQ (ENSORLG00000007381)	plekha8 (ENSORLG00000007400)	fkbp14 (ENSORLG00000007415)	CHN2 (ENSORLG00000007444)	cpvl (ENSORLG00000007488)	CREB5 (ENSORLG00000007509)	JAZF1 (ENSORLG00000007516)	tax1bp1b (ENSORLG00000007562)	hibadhb (ENSORLG00000007586)	hoxa13b (ENSORLG00000007597)
Oryzias_b	ANCESTRAL SPECIES	1	ENSGT00390000008932.n	ENSGT00940000156775.f	ENSGT00940000157833.h.b	ENSGT00390000003781.e.a	ENSGT00390000013846.a.b	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT00940000155739	ENSGT01100000263473.b.a.a.a	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00390000013151.a.b #22	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255	ENSGT00940000164071.b.a	ENSGT00940000158311.b
Indian medaka	MODERN SPECIES	5	AIF1 (ENSOMEG00000019762)	ENSOMEG00000019797	ENSOMEG00000019816	c4b (ENSOMEG00000019873)	ENSOMEG00000019898	rxrbb (ENSOMEG00000019956)	ENSOMEG00000020098	ENSOMEG00000020123 #9	ENSOMEG00000020136 #14	ENSOMEG00000020189 #17	ENSOMEG00000020223 #17	ENSOMEG00000020238	ENSOMEG00000020255	ENSOMEG00000020267	sp8b (ENSOMEG00000020278) #19	macc1 (ENSOMEG00000020293) #22	twist1b (ENSOMEG00000020301)	hdac9b (ENSOMEG00000020371)	ANKRD28 (ENSOMEG00000020476)	hacl1 (ENSOMEG00000020529)	COLQ (ENSOMEG00000020557)	plekha8 (ENSOMEG00000020599)	fkbp14 (ENSOMEG00000020616)	CHN2 (ENSOMEG00000020636)	cpvl (ENSOMEG00000020677)	CREB5 (ENSOMEG00000020734)	JAZF1 (ENSOMEG00000020759)	tax1bp1b (ENSOMEG00000020843)	hibadhb (ENSOMEG00000020876)	hoxa13b (ENSOMEG00000020887)	hoxa11b (ENSOMEG00000020907)
Javanese ricefish	MODERN SPECIES	7	ENSOJAG00000009964	ENSOJAG00000009977	ENSOJAG00000010002	csnk2a1 (ENSOJAG00000010047)	ENSOJAG00000010595	pon1 (ENSOJAG00000010606)	kcnk5b (ENSOJAG00000010697)	ENSOJAG00000010742	csnk2b (ENSOJAG00000010906)	ENSOJAG00000010996	ENSOJAG00000012246	rxrbb (ENSOJAG00000012317)	ENSOJAG00000012399	ENSOJAG00000012981 #9	sp8b (ENSOJAG00000017342) #19	macc1 (ENSOJAG00000001958) #22	twist1b (ENSOJAG00000001984)	hdac9b (ENSOJAG00000002010)	ANKRD28 (ENSOJAG00000002474)	hacl1 (ENSOJAG00000004335)	COLQ (ENSOJAG00000004426)	plekha8 (ENSOJAG00000004450)	fkbp14 (ENSOJAG00000004525)	CHN2 (ENSOJAG00000004542)	cpvl (ENSOJAG00000004653)	CREB5 (ENSOJAG00000004901)	JAZF1 (ENSOJAG00000004919)	tax1bp1b (ENSOJAG00000004952)	hibadhb (ENSOJAG00000004992)	hoxa13b (ENSOJAG00000005031)	hoxa11b (ENSOJAG00000005039)
Ovalentaria_B	ANCESTRAL SPECIES	1	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT01030000235045	ENSGT00940000155739	ENSGT00950000183411	ENSGT01100000263473.b.a.a.a	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000154807.b	ENSGT00940000154896.l	ENSGT00940000158906.i	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00390000013151.a.b #22	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00940000156420.b	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255	ENSGT00940000164071.b.a
Cichlidae	ANCESTRAL SPECIES	9	ENSGT00390000013846.a.b	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT01030000235045	ENSGT00940000155739	ENSGT00950000183411	ENSGT01100000263473.b.a.a.a	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000154807.b	ENSGT00940000158906.i	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00390000013151.a.b #22	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00940000156420.b	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255	ENSGT00940000164071.b.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	2	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT00940000155739.ub	ENSGT01030000235045	ENSGT00940000155739.tb	ENSGT00950000183411	ENSGT01100000263473.b.a.a.a	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000154807.b	ENSGT00940000158906.i	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00390000013151.a.b #22	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00940000156420.b	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255	ENSGT00940000164071.b.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	1	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT00940000155739.ub	ENSGT01030000235045	ENSGT00940000155739.tb	ENSGT00950000183411	ENSGT01100000263473.b.a.a.a	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000154807.b	ENSGT00940000158906.i	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00390000013151.a.b #22	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00940000156420.b	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255	ENSGT00940000164071.b.a
Haplochromini	ANCESTRAL SPECIES	6	ENSGT00390000013846.a.b	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT00940000155739.ub	ENSGT01030000235045.i	ENSGT00940000155739.tb	ENSGT00950000183411	ENSGT01100000263473.b.a.a.a	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000158906.i	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00390000013151.a.b #22	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255	ENSGT00940000164071.b.a	ENSGT00940000158311.b
Haplochromini_A	ANCESTRAL SPECIES	18	ENSGT00390000013846.a.b	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT00940000155739.ub	ENSGT01030000235045.i	ENSGT00940000155739.tb	ENSGT00950000183411	ENSGT01100000263473.b.a.a.a	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000158906.i	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00390000013151.a.b #22	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255	ENSGT00940000164071.b.a	ENSGT00940000158311.b
Haplochromini_B	ANCESTRAL SPECIES	6	ENSGT00390000003781.e.a	ENSGT00390000013846.a.b	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT00940000155739.ub	ENSGT00940000155739.tb	ENSGT00950000183411	ENSGT01100000263473.b.a.a.a	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000158906.i	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00390000013151.a.b #22	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255	ENSGT00940000164071.b.a	ENSGT00940000158311.b
Zebra mbuna	MODERN SPECIES	1093	kcnk5b (ENSMZEG00005013352)	ENSMZEG00005013364	csnk2b (ENSMZEG00005013382)	AIF1 (ENSMZEG00005013388)	ENSMZEG00005013402	ENSMZEG00005013412	c4b (ENSMZEG00005013428)	c4b (ENSMZEG00005013461)	rxrbb (ENSMZEG00005013516)	FHOD3 (ENSMZEG00005013566)	SLC6A18 (ENSMZEG00005013664)	ENSMZEG00005013694 #9	ENSMZEG00005013707 #14	ENSMZEG00005013729 #17	sp8b (ENSMZEG00005013768) #19	macc1 (ENSMZEG00005013770) #22	twist1b (ENSMZEG00005013777)	hdac9b (ENSMZEG00005013800)	ENSMZEG00005013825	ANKRD28 (ENSMZEG00005013857)	hacl1 (ENSMZEG00005013889)	COLQ (ENSMZEG00005013922)	plekha8 (ENSMZEG00005013943)	fkbp14 (ENSMZEG00005013971)	CHN2 (ENSMZEG00005013985)	cpvl (ENSMZEG00005014001)	CREB5 (ENSMZEG00005014013)	JAZF1 (ENSMZEG00005014024)	tax1bp1b (ENSMZEG00005014031)	hibadhb (ENSMZEG00005014049)	hoxa13b (ENSMZEG00005014057)
Eastern happy	MODERN SPECIES	2	AIF1 (ENSACLG00000001677)	ENSACLG00000001700	ENSACLG00000001725	ENSACLG00000001736	c4b (ENSACLG00000001868)	c4b (ENSACLG00000001995)	ENSACLG00000002085	ENSACLG00000002092	rxrbb (ENSACLG00000002108)	FHOD3 (ENSACLG00000002229)	ENSACLG00000002283	ENSACLG00000002413 #9	RAPGEF5 (ENSACLG00000002424) #14	DNAH11 (ENSACLG00000002481) #17	sp8b (ENSACLG00000002726) #19	macc1 (ENSACLG00000002730) #22	twist1b (ENSACLG00000002756)	hdac9b (ENSACLG00000002835)	ANKRD28 (ENSACLG00000002928)	hacl1 (ENSACLG00000003050)	COLQ (ENSACLG00000003113)	plekha8 (ENSACLG00000003143)	fkbp14 (ENSACLG00000003212)	CHN2 (ENSACLG00000003258)	cpvl (ENSACLG00000003328)	CREB5 (ENSACLG00000003365)	JAZF1 (ENSACLG00000003411)	tax1bp1b (ENSACLG00000003435)	hibadhb (ENSACLG00000003518)	hoxa13b (ENSACLG00000003533)	hoxa11b (ENSACLG00000003540)
P. nyererei	MODERN SPECIES	379	kcnk5b (ENSPNYG00000013468)	ENSPNYG00000013483	csnk2b (ENSPNYG00000013523)	AIF1 (ENSPNYG00000013551)	ENSPNYG00000013586	ENSPNYG00000013677	c4b (ENSPNYG00000013713)	ENSPNYG00000013813	rxrbb (ENSPNYG00000013852)	FHOD3 (ENSPNYG00000013926)	ENSPNYG00000013996	ENSPNYG00000014080 #9	ENSPNYG00000014109 #14	ENSPNYG00000014167 #17	sp8b (ENSPNYG00000014313) #19	macc1 (ENSPNYG00000014344) #22	twist1b (ENSPNYG00000014358)	hdac9b (ENSPNYG00000014404)	ANKRD28 (ENSPNYG00000014481)	hacl1 (ENSPNYG00000014606)	COLQ (ENSPNYG00000014683)	plekha8 (ENSPNYG00000014782)	fkbp14 (ENSPNYG00000014830)	CHN2 (ENSPNYG00000014857)	cpvl (ENSPNYG00000014875)	CREB5 (ENSPNYG00000014903)	JAZF1 (ENSPNYG00000014932)	tax1bp1b (ENSPNYG00000014959)	hibadhb (ENSPNYG00000015054)	hoxa13b (ENSPNYG00000015087)	hoxa11b (ENSPNYG00000015136)
Burton s mouthbrooder	MODERN SPECIES	444								ENSHBUG00000018814	rxrbb (ENSHBUG00000018792)	FHOD3 (ENSHBUG00000018710)	ENSHBUG00000018690	ENSHBUG00000018677 #9	ENSHBUG00000018623 #14	ENSHBUG00000018573 #17	sp8b (ENSHBUG00000018357) #19	macc1 (ENSHBUG00000018346) #22	twist1b (ENSHBUG00000018336)	hdac9b (ENSHBUG00000018280)	ANKRD28 (ENSHBUG00000018150)	hacl1 (ENSHBUG00000018057)	COLQ (ENSHBUG00000017971)	plekha8 (ENSHBUG00000017938)	fkbp14 (ENSHBUG00000017848)	CHN2 (ENSHBUG00000017824)	cpvl (ENSHBUG00000017759)	CREB5 (ENSHBUG00000001119)	JAZF1 (ENSHBUG00000017624)	tax1bp1b (ENSHBUG00000017598)	hibadhb (ENSHBUG00000017577)	hoxa13b (ENSHBUG00000017566)	hoxa11b (ENSHBUG00000017560)
Lyretail cichlid	MODERN SPECIES	369	ENSNBRG00000017904	ENSNBRG00000017861	ENSNBRG00000017841	c4b (ENSNBRG00000017736)	c4b (ENSNBRG00000017518)	ENSNBRG00000017447	rxrbb (ENSNBRG00000017426)	FHOD3 (ENSNBRG00000017399)	ENSNBRG00000017385	ENSNBRG00000017379	ENSNBRG00000017349	ENSNBRG00000017320 #9	ENSNBRG00000017281 #14	DNAH11 (ENSNBRG00000017134) #17	sp8b (ENSNBRG00000017082) #19	macc1 (ENSNBRG00000017063) #22	twist1b (ENSNBRG00000017011)	hdac9b (ENSNBRG00000016972)	ANKRD28 (ENSNBRG00000016903)	hacl1 (ENSNBRG00000016787)	COLQ (ENSNBRG00000016728)	plekha8 (ENSNBRG00000016692)	fkbp14 (ENSNBRG00000016680)	CHN2 (ENSNBRG00000016649)	cpvl (ENSNBRG00000016620)	CREB5 (ENSNBRG00000016593)	ENSNBRG00000016575	JAZF1 (ENSNBRG00000016562)	tax1bp1b (ENSNBRG00000016538)	hibadhb (ENSNBRG00000016497)	hoxa13b (ENSNBRG00000016416)
Nile tilapia	MODERN SPECIES	2	csnk2b (ENSONIG00000002820)	AIF1 (ENSONIG00000002823)	ENSONIG00000002824	c4b (ENSONIG00000002827)	ENSONIG00000028828	c4b (ENSONIG00000002863)	ENSONIG00000028059	ENSONIG00000041654	rxrbb (ENSONIG00000002873)	FHOD3 (ENSONIG00000002877)	ENSONIG00000002879	ENSONIG00000002882 #9	RAPGEF5 (ENSONIG00000002883) #14	DNAH11 (ENSONIG00000002886) #17	sp8b (ENSONIG00000002896) #19	macc1 (ENSONIG00000002898) #22	twist1b (ENSONIG00000020610)	hdac9b (ENSONIG00000002902)	ANKRD28 (ENSONIG00000002905)	hacl1 (ENSONIG00000002911)	COLQ (ENSONIG00000002914)	plekha8 (ENSONIG00000002916)	fkbp14 (ENSONIG00000002921)	CHN2 (ENSONIG00000002925)	cpvl (ENSONIG00000002938)	CREB5 (ENSONIG00000002945)	JAZF1 (ENSONIG00000004607)	tax1bp1b (ENSONIG00000002952)	hibadhb (ENSONIG00000002955)	hoxa13b (ENSONIG00000002962)	hoxa11b (ENSONIG00000002963)
Midas cichlid	MODERN SPECIES	303	csnk2b (ENSACIG00000017966)	AIF1 (ENSACIG00000017736)	ENSACIG00000017641	ENSACIG00000017580	c4b (ENSACIG00000017508)	c4b (ENSACIG00000017425)	c4b (ENSACIG00000017277)	rxrbb (ENSACIG00000017241)	FHOD3 (ENSACIG00000017221)	ENSACIG00000017212	ENSACIG00000017209	ENSACIG00000017178 #9	RAPGEF5 (ENSACIG00000017155) #14	DNAH11 (ENSACIG00000016892) #17	sp8b (ENSACIG00000016834) #19	macc1 (ENSACIG00000016818) #22	twist1b (ENSACIG00000016767)	hdac9b (ENSACIG00000016677)	ANKRD28 (ENSACIG00000016624)	hacl1 (ENSACIG00000016585)	COLQ (ENSACIG00000016565)	plekha8 (ENSACIG00000016533)	fkbp14 (ENSACIG00000016522)	CHN2 (ENSACIG00000016488)	cpvl (ENSACIG00000016460)	CREB5 (ENSACIG00000016442)	JAZF1 (ENSACIG00000016428)	tax1bp1b (ENSACIG00000016387)	hibadhb (ENSACIG00000016255)	hoxa13b (ENSACIG00000016195)	hoxa11b (ENSACIG00000016183)
Pomacentridae	ANCESTRAL SPECIES	18	ENSGT00940000157833.h.b	ENSGT00390000003781.e.a	ENSGT00390000013846.a.b	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT00940000155739	ENSGT01100000263473.b.a.a.a.g	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000154896.l	ENSGT00940000158906.i	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00390000013151.a.b #22	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00940000156420.b	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255	ENSGT00940000164071.b.a
Pomacentridae_A	ANCESTRAL SPECIES	5	ENSGT00940000157833.h.b	ENSGT00390000003781.e.a	ENSGT00390000013846.a.b	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT00940000155739	ENSGT01100000263473.b.a.a.a.g	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000154896.l	ENSGT00940000158906.i	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00390000013151.a.b #22	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00940000156420.b	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255	ENSGT00940000164071.b.a
Amphiprion	ANCESTRAL SPECIES	1	ENSGT00940000157833.h.b	ENSGT00390000003781.e.a	ENSGT00390000013846.a.b	ENSGT00940000158338	ENSGT00940000155565.a	ENSGT00940000155739	ENSGT01100000263473.b.a.a.a.g	ENSGT00940000159208.B	ENSGT00940000154807.a.a	ENSGT00940000154896.l	ENSGT00940000158906.i	ENSGT00940000164650 #9	ENSGT00940000155137.a.a #14	ENSGT00940000158880 #17	ENSGT00940000162033.a.a #19	ENSGT00390000013151.a.b #22	ENSGT00940000163428.b.a	ENSGT00940000166341	ENSGT00950000182908.C.b	ENSGT00940000156802	ENSGT00940000157248.c.a	ENSGT00940000157288	ENSGT00940000157858.i	ENSGT01030000234635.a.b.a.a	ENSGT00940000159498	ENSGT00940000156420.a.a	ENSGT00940000156420.b	ENSGT00390000003635.h	ENSGT00950000183025.b.a.`b	ENSGT00940000155255	ENSGT00940000164071.b.a
Orange clownfish	MODERN SPECIES	21	rxrbb (ENSAPEG00000013181)	ENSAPEG00000013166	FHOD3 (ENSAPEG00000013100)	ENSAPEG00000013093	ENSAPEG00000013087	slc6a19b (ENSAPEG00000012823)	slc6a19b (ENSAPEG00000012767)	slc6a19b (ENSAPEG00000012514)	SLC6A18 (ENSAPEG00000012483)	ENSAPEG00000012384 #9	RAPGEF5 (ENSAPEG00000012323) #14	ENSAPEG00000012294	ENSAPEG00000011992 #17	ENSAPEG00000011854 #17	sp8b (ENSAPEG00000011780) #19	macc1 (ENSAPEG00000011766) #22	twist1b (ENSAPEG00000011695)	hdac9b (ENSAPEG00000011621)	ANKRD28 (ENSAPEG00000011524)	hacl1 (ENSAPEG00000011431)	COLQ (ENSAPEG00000011370)	plekha8 (ENSAPEG00000011298)	fkbp14 (ENSAPEG00000011268)	CHN2 (ENSAPEG00000011217)	cpvl (ENSAPEG00000011142)	CREB5 (ENSAPEG00000010990)	ENSAPEG00000010975	JAZF1 (ENSAPEG00000010953)	tax1bp1b (ENSAPEG00000010863)	hibadhb (ENSAPEG00000010821)	hoxa13b (ENSAPEG00000010694)
Clown anemonefish	MODERN SPECIES	3404	ENSAOCG00000004807	ENSAOCG00000000186	c4b (ENSAOCG00000004726)	ENSAOCG00000004668	rxrbb (ENSAOCG00000004653)	FHOD3 (ENSAOCG00000004613)	ENSAOCG00000004595	ENSAOCG00000004580	slc6a19b (ENSAOCG00000004568)	SLC6A18 (ENSAOCG00000004542)	ENSAOCG00000004519 #9	RAPGEF5 (ENSAOCG00000004433) #14	ENSAOCG00000004405 #17	ENSAOCG00000004325 #17	sp8b (ENSAOCG00000004279) #19	macc1 (ENSAOCG00000004274) #22	twist1b (ENSAOCG00000004272)	hdac9b (ENSAOCG00000004258)	ANKRD28 (ENSAOCG00000004231)	hacl1 (ENSAOCG00000004167)	plekha8 (ENSAOCG00000004124)	fkbp14 (ENSAOCG00000004089)	CHN2 (ENSAOCG00000004058)	cpvl (ENSAOCG00000003999)	CREB5 (ENSAOCG00000003987)	JAZF1 (ENSAOCG00000003982)	tax1bp1b (ENSAOCG00000003970)	hibadhb (ENSAOCG00000003953)	hoxa13b (ENSAOCG00000003928)	ENSAOCG00000003913	hoxa9b (ENSAOCG00000003903)
Spiny chromis	MODERN SPECIES	194												RAPGEF5 (ENSAPOG00000016598) #14	DNAH11 (ENSAPOG00000016847) #17	ENSAPOG00000016913 #17	sp8b (ENSAPOG00000016930) #19	macc1 (ENSAPOG00000016938) #22	twist1b (ENSAPOG00000016998)	hdac9b (ENSAPOG00000017075)	ANKRD28 (ENSAPOG00000017221)	hacl1 (ENSAPOG00000017232)	COLQ (ENSAPOG00000017255)	plekha8 (ENSAPOG00000017273)	fkbp14 (ENSAPOG00000017291)	CHN2 (ENSAPOG00000017355)	cpvl (ENSAPOG00000017366)	cpvl (ENSAPOG00000000472)	CREB5 (ENSAPOG00000017445)	JAZF1 (ENSAPOG00000017474)	tax1bp1b (ENSAPOG00000017500)	hibadhb (ENSAPOG00000017541)	hoxa13b (ENSAPOG00000017602)
Bicolor damselfish	MODERN SPECIES	1226										slc6a19b (ENSSPAG00000015429)	SLC6A18 (ENSSPAG00000015448)	ENSSPAG00000015492 #9	RAPGEF5 (ENSSPAG00000015508) #14	DNAH11 (ENSSPAG00000015563) #17	sp8b (ENSSPAG00000015704) #19	macc1 (ENSSPAG00000015749) #22	twist1b (ENSSPAG00000015764)	hdac9b (ENSSPAG00000015784)
Tiger tail seahorse	MODERN SPECIES	208	kcnk5b (ENSHCOG00000012650)	ENSHCOG00000000363	ENSHCOG00000012606	ENSHCOG00000012600	ENSHCOG00000012579	ENSHCOG00000012554	rxrbb (ENSHCOG00000012534)	FHOD3 (ENSHCOG00000012494)	ENSHCOG00000012463	ENSHCOG00000012447	slc6a19b (ENSHCOG00000012438)	ENSHCOG00000012412 #9	ENSHCOG00000012394 #14	DNAH11 (ENSHCOG00000012354) #17	sp8b (ENSHCOG00000012237) #19	macc1 (ENSHCOG00000012219) #22	twist1b (ENSHCOG00000012208)	hdac9b (ENSHCOG00000012189)	ANKRD28 (ENSHCOG00000012141)	ENSHCOG00000012084	CPQ (ENSHCOG00000012071)	dscc1 (ENSHCOG00000012057)	mrpl13 (ENSHCOG00000012037)	COL14A1 (ENSHCOG00000012016)	deptor (ENSHCOG00000011939)	LIMD1 (ENSHCOG00000011905)	lars2 (ENSHCOG00000011897)	cdcp1a (ENSHCOG00000011848)	CLEC3B (ENSHCOG00000011832)	ENSHCOG00000011825	ENSHCOG00000011808
Pinecone sodierfish	MODERN SPECIES	7	ENSMMDG00005009494	csnk2b (ENSMMDG00005009991)	AIF1 (ENSMMDG00005010016)	ENSMMDG00005010021	c4b (ENSMMDG00005010047)	ENSMMDG00005011687	rxrbb (ENSMMDG00005011690)	FHOD3 (ENSMMDG00005011754)	ENSMMDG00005011756	ENSMMDG00005011757	ENSMMDG00005011770	ENSMMDG00005012023 #9	RAPGEF5 (ENSMMDG00005012031) #14	DNAH11 (ENSMMDG00005012062) #17	sp8b (ENSMMDG00005012218) #19	macc1 (ENSMMDG00005012219) #22	twist1b (ENSMMDG00005012221)	hdac9b (ENSMMDG00005012223)	ANKRD28 (ENSMMDG00005012342)	hacl1 (ENSMMDG00005019372)	COLQ (ENSMMDG00005019402)	plekha8 (ENSMMDG00005019413)	fkbp14 (ENSMMDG00005019440)	CHN2 (ENSMMDG00005019442)	cpvl (ENSMMDG00005019447)	CREB5 (ENSMMDG00005019865)	JAZF1 (ENSMMDG00005019868)	tax1bp1b (ENSMMDG00005019874)	hibadhb (ENSMMDG00005019882)	hoxa13b (ENSMMDG00005019936)	hoxa11b (ENSMMDG00005019940)
Cod	MODERN SPECIES	4	ENSGMOG00000034650	ENSGMOG00000033314	ENSGMOG00000022920	ENSGMOG00000034648	ENSGMOG00000036371	ENSGMOG00000030709	ENSGMOG00000036238	ENSGMOG00000026306	ENSGMOG00000029157	ENSGMOG00000036098	ENSGMOG00000035230	ENSGMOG00000036422	ENSGMOG00000035171	ENSGMOG00000028810	ENSGMOG00000008078 #19	ENSGMOG00000008080 #22	ENSGMOG00000031633	ENSGMOG00000033559	ENSGMOG00000009895	ENSGMOG00000032722	ENSGMOG00000028223	ENSGMOG00000036599	ENSGMOG00000030940	ENSGMOG00000036563	coro1ca (ENSGMOG00000017135)	SSH1 (ENSGMOG00000008427)	ENSGMOG00000027243	dao.2 (ENSGMOG00000016658)	SVOP (ENSGMOG00000016675)	ENSGMOG00000006989	ENSGMOG00000006997
Spotted gar	MODERN SPECIES	649	tra2a (ENSLOCG00000011615)	igf2bp3 (ENSLOCG00000011599)	malsu1 (ENSLOCG00000011592)	GPNMB (ENSLOCG00000011583)	klhl7 (ENSLOCG00000011576)	hycc1 (ENSLOCG00000011562) #8	ENSLOCG00000011557 #9	TOMM7 (ENSLOCG00000011551) #10	RAPGEF5 (ENSLOCG00000011542) #14	CDCA7L (ENSLOCG00000011532) #15	DNAH11 (ENSLOCG00000011503) #17	sp4 (ENSLOCG00000011495) #18	sp8b (ENSLOCG00000011486) #19	ENSLOCG00000011448	ITGB8 (ENSLOCG00000011431) #21	macc1 (ENSLOCG00000011422) #22	ENSLOCG00000011414	POLR1F (ENSLOCG00000011399) #25	FERD3L (ENSLOCG00000018351) #26	twist1b (ENSLOCG00000018350)	HDAC9 (ENSLOCG00000011383) #28	SNX13 (ENSLOCG00000011366) #30	ahr1a (ENSLOCG00000011345) #32	agr2 (ENSLOCG00000011333) #34	tspan13b (ENSLOCG00000011327) #33	bzw2 (ENSLOCG00000011315) #35	ankmy2a (ENSLOCG00000011307) #36	ENSLOCG00000011298	SOSTDC1 (ENSLOCG00000011289)	crppa (ENSLOCG00000011281)	MEOX2 (ENSLOCG00000011275)
Reedfish	MODERN SPECIES	4	igf2bp3 (ENSECRG00000011278)	MALSU1 (ENSECRG00000011359)	GPNMB (ENSECRG00000011377)	NUP42 (ENSECRG00000011402)	klhl7 (ENSECRG00000011424)	hycc1 (ENSECRG00000011445) #8	ENSECRG00000011491 #9	TOMM7 (ENSECRG00000011568) #10	RAPGEF5 (ENSECRG00000011589) #14	CDCA7L (ENSECRG00000011677) #15	ENSECRG00000011698	sp4 (ENSECRG00000011730) #18	sp8b (ENSECRG00000011751) #19	ENSECRG00000011791	ITGB8 (ENSECRG00000011851) #21	macc1 (ENSECRG00000011866) #22	ENSECRG00000011886	POLR1F (ENSECRG00000011901) #25	FERD3L (ENSECRG00000011916) #26	twist1b (ENSECRG00000011921)	ENSECRG00000011936	HDAC9 (ENSECRG00000011983) #28	ENSECRG00000012123	ahr1a (ENSECRG00000012136) #32	ENSECRG00000012149	agr2 (ENSECRG00000012155) #34	AGR2 (ENSECRG00000012174) #34	tspan13b (ENSECRG00000012186) #33	bzw2 (ENSECRG00000012227) #35	ankmy2a (ENSECRG00000012305) #36	SOSTDC1 (ENSECRG00000012329)
Elephant shark	MODERN SPECIES	1489	GPNMB (ENSCMIG00000016857)	ENSCMIG00000016860	klhl7 (ENSCMIG00000016864)	hycc1 (ENSCMIG00000016875) #8	TOMM7 (ENSCMIG00000016888) #10	ENSCMIG00000016896 #14	RAPGEF5 (ENSCMIG00000016903) #14	ENSCMIG00000016907	ENSCMIG00000016911 #15	DNAH11 (ENSCMIG00000017062) #17	sp4 (ENSCMIG00000017228) #18	sp8b (ENSCMIG00000017230) #19	ENSCMIG00000017624	ENSCMIG00000018074	ITGB8 (ENSCMIG00000018078) #21	macc1 (ENSCMIG00000018082) #22
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00390000013151.a.b #22
Lamprey	MODERN SPECIES	583																ENSPMAG00000005757 #22
Hagfish	MODERN SPECIES	1203				ENSEBUG00000000934	ENSEBUG00000005151	dlx6a (ENSEBUG00000017031)	ENSEBUG00000011630	ENSEBUG00000015547	SLC25A13 (ENSEBUG00000008153)	ENSEBUG00000009002	ENSEBUG00000005784	ENSEBUG00000012673	ENSEBUG00000015552	ENSEBUG00000010996	ENSEBUG00000000430	ENSEBUG00000006461 #22	ENSEBUG00000003800 ##32	cdk2 (ENSEBUG00000007048)