Hystricomorpha	ANCESTRAL SPECIES	28	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b.c ##22	ENSGT00390000012547.b.d #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #24	ENSGT00940000156190.g #25	ENSGT00940000159232.h.b #26	ENSGT00940000158720.c.b	ENSGT00940000159743 #27	ENSGT00940000162639 #28	ENSGT00940000154453.b.b #29	ENSGT00940000157249 #31	ENSGT00940000155408 #32	ENSGT00940000155235 #33	ENSGT01030000234607.A.b #34	ENSGT00530000063410.b #35	ENSGT00940000162403 #36	ENSGT00390000015769.B
Hystricomorpha_a	ANCESTRAL SPECIES	67	ENSGT00940000156532	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b.d #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #24	ENSGT00940000156190.g #25	ENSGT00940000159232.h.b #26	ENSGT00940000159743 #27	ENSGT00940000162639 #28	ENSGT00940000154453.b.b #29	ENSGT00940000157249 #31	ENSGT00940000155408 #32	ENSGT00940000155235 #33	ENSGT01030000234607.A.b #34	ENSGT00530000063410.b #35	ENSGT00940000162403 #36	ENSGT00940000158781 #37	ENSGT00940000160642
Hystricomorpha_b	ANCESTRAL SPECIES	52	ENSGT00940000156532	ENSGT00720000108792.B #7	ENSGT00940000155053 #8	ENSGT00940000157137 #9	ENSGT00940000154695 #10	ENSGT00940000157192 #11	ENSGT00530000063186.b.b #12	ENSGT01030000234570.d.a #13	ENSGT00940000157652 #14	ENSGT00530000063688.a #15	ENSGT00390000001447 #16	ENSGT00640000091496 #17	ENSGT00940000156597.b #18	ENSGT00940000159094 #20	ENSGT00940000156307.b #21	ENSGT00390000012547.b.d #22	ENSGT00390000004840 #23	ENSGT00940000156190.h #24	ENSGT00940000156190.g #25	ENSGT00940000159232.h.b #26	ENSGT00940000159743 #27	ENSGT00940000162639 #28	ENSGT00940000154453.b.b #29	ENSGT00940000157249 #31	ENSGT00940000155408 #32	ENSGT00940000155235 #33	ENSGT01030000234607.A.b #34	ENSGT00530000063410.b #35	ENSGT00940000162403 #36	ENSGT00940000158781 #37	ENSGT00940000160642
Long-tailed chinchilla	MODERN SPECIES	164	VWC2L (ENSCLAG00000004321) #7	ENSCLAG00000004744 #8	IKZF2 (ENSCLAG00000003632) #9	ERBB4 (ENSCLAG00000006948) #10	CPS1 (ENSCLAG00000003104) #11	LANCL1 (ENSCLAG00000005272) #12	MYL1 (ENSCLAG00000004096) #13	ACADL (ENSCLAG00000004230) #14	KANSL1L (ENSCLAG00000005749) #15	ENSCLAG00000003444 #16	UNC80 (ENSCLAG00000004587) #17	MAP2 (ENSCLAG00000003473) #18	ENSCLAG00000003083 #19	PTH2R (ENSCLAG00000003358) #20	PIKFYVE (ENSCLAG00000005225) #21	IDH1 (ENSCLAG00000013186) #22	C2orf80 (ENSCLAG00000012137) #23	CRYGA (ENSCLAG00000013039) #24	ENSCLAG00000010298 #25	CRYGC (ENSCLAG00000010342) #26	PLEKHM3 (ENSCLAG00000010825) #27	FZD5 (ENSCLAG00000008821) #28	ENSCLAG00000004502 #29	ENSCLAG00000005432 #30	METTL21A (ENSCLAG00000005572) #31	CREB1 (ENSCLAG00000005853) #32	KLF7 (ENSCLAG00000006083) #33	FASTKD2 (ENSCLAG00000007036) #34	MDH1B (ENSCLAG00000003385) #35	DYTN (ENSCLAG00000003705) #36	ADAM23 (ENSCLAG00000004674) #37
Degu	DUPLICATION
Degu	MODERN SPECIES	216															ENSODEG00000002756	ENSODEG00000002722 #22	ENSODEG00000002633	PCDH9 (ENSODEG00000002576)	ENSODEG00000018812
Degu	MODERN SPECIES	71	ENSODEG00000007585	LRRN1 (ENSODEG00000007430)	ENSODEG00000006737	ENSODEG00000008720	TRNT1 (ENSODEG00000007597)	IL5RA (ENSODEG00000006715)	CNTN4 (ENSODEG00000007155)	CNTN6 (ENSODEG00000006499)	ENSODEG00000007284	ENSODEG00000019383	CHL1 (ENSODEG00000010169)	ENSODEG00000019392	CNTN3 (ENSODEG00000006512)	PDZRN3 (ENSODEG00000008618)	ENSODEG00000006984	ENSODEG00000006618 #22	ENSODEG00000007939 #19	ENSODEG00000007497	ENSODEG00000019359	GXYLT2 (ENSODEG00000008178)	SHQ1 (ENSODEG00000009192)	RYBP (ENSODEG00000008699)	PROK2 (ENSODEG00000007144)	GPR27 (ENSODEG00000006497)	EIF4E3 (ENSODEG00000006191)	FOXP1 (ENSODEG00000007047)	MDFIC2 (ENSODEG00000006638)	MITF (ENSODEG00000009287)	ENSODEG00000006902	FRMD4B (ENSODEG00000005588)	LMOD3 (ENSODEG00000005409)
Guinea pig	MODERN SPECIES	13	BARD1 (ENSCPOG00000011499)	VWC2L (ENSCPOG00000013515) #7	IKZF2 (ENSCPOG00000013506) #9	ERBB4 (ENSCPOG00000011232) #10	ENSCPOG00000035740	CPS1 (ENSCPOG00000004146) #11	LANCL1 (ENSCPOG00000009439) #12	MYL1 (ENSCPOG00000009446) #13	ACADL (ENSCPOG00000009871) #14	KANSL1L (ENSCPOG00000001503) #15	ENSCPOG00000001502 #16	UNC80 (ENSCPOG00000008641) #17	ENSCPOG00000040677 #18	PTH2R (ENSCPOG00000027198) #20	PIKFYVE (ENSCPOG00000003863) #21	IDH1 (ENSCPOG00000013587) #22	C2orf80 (ENSCPOG00000015050) #23	CRYGA (ENSCPOG00000015047) #24	ENSCPOG00000022025 #25	CRYGC (ENSCPOG00000000186) #26	PLEKHM3 (ENSCPOG00000004119) #27	FZD5 (ENSCPOG00000038146) #28	ENSCPOG00000035156 #29	METTL21A (ENSCPOG00000034803) #31	CREB1 (ENSCPOG00000010778) #32	KLF7 (ENSCPOG00000009080) #33	FASTKD2 (ENSCPOG00000005624) #34	MDH1B (ENSCPOG00000005608) #35	ADAM23 (ENSCPOG00000005871) #37	EEF1B2 (ENSCPOG00000014496)	NDUFS1 (ENSCPOG00000005555)
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES		ENSHGLG00000021037	ENSHGLG00000020868	ENSHGLG00000019647	ENSHGLG00000044369	ENSHGLG00000044639	ENSHGLG00000042688	ENSHGLG00000019680	ENSHGLG00000020888	ENSHGLG00000034476	ENSHGLG00000041081	ENSHGLG00000018891	ENSHGLG00000032616	ENSHGLG00000035640	ENSHGLG00000045321	ENSHGLG00000042358	ENSHGLG00000000746 #22	ENSHGLG00000020121	ENSHGLG00000032106	ENSHGLG00000041333	ENSHGLG00000044343	ENSHGLG00000035030	ENSHGLG00000019642	ENSHGLG00000009764	ENSHGLG00000036657	ENSHGLG00000044549	ENSHGLG00000000510	ENSHGLG00000019985	ENSHGLG00000046356	ENSHGLG00000009234	ENSHGLG00000043662	ENSHGLG00000041448
Naked mole-rat female	MODERN SPECIES	23	EGR4 (ENSHGLG00000009021)	FBXO41 (ENSHGLG00000010102)	CCT7 (ENSHGLG00000011761)	PRADC1 (ENSHGLG00000015353)	SMYD5 (ENSHGLG00000015439)	RAB11FIP5 (ENSHGLG00000016021)	SFXN5 (ENSHGLG00000007851)	EMX1 (ENSHGLG00000036309)	SPR (ENSHGLG00000041182)	ENSHGLG00000006121	ENSHGLG00000040821	ENSHGLG00000032593	ENSHGLG00000039406	EXOC6B (ENSHGLG00000011639)	CYP26B1 (ENSHGLG00000016604)	ENSHGLG00000043383 #22	DYSF (ENSHGLG00000007256)	ZNF638 (ENSHGLG00000015789)	ENSHGLG00000050708	ENSHGLG00000039175	ENSHGLG00000015917	TEX261 (ENSHGLG00000047338)	ANKRD53 (ENSHGLG00000015981)	ATP6V1B1 (ENSHGLG00000034993)	VAX2 (ENSHGLG00000038768)	CD207 (ENSHGLG00000017278)	CLEC4F (ENSHGLG00000015223)	FIGLA (ENSHGLG00000015232)	ADD2 (ENSHGLG00000015246)	TGFA (ENSHGLG00000006181)	FAM136A (ENSHGLG00000043927)