Rodentia_A ANCESTRAL SPECIES 13 ENSGT00720000108792.B #7 ENSGT00940000155053 #8 ENSGT00940000157137 #9 ENSGT00940000154695 #10 ENSGT00940000157192 #11 ENSGT00530000063186.b.b #12 ENSGT01030000234570.d.a #13 ENSGT00940000157652 #14 ENSGT00530000063688.a #15 ENSGT00390000001447 #16 ENSGT00640000091496 #17 ENSGT00940000156597.b #18 ENSGT00940000163272.a.a ENSGT00940000159094 #20 ENSGT00940000156307.b #21 ENSGT00390000012547.b #22 ENSGT00390000004840 #23 ENSGT00940000156190.h #24 ENSGT00940000156190.g #25 ENSGT00940000159232.h.b #26 ENSGT00940000163272.a.b ENSGT00940000158720.c.b ENSGT00940000159743 #27 ENSGT00940000162639 #28 ENSGT00940000154453.b.b #29 ENSGT00940000154453.b.a.b ##29 ENSGT00940000157249 #31 ENSGT00940000155408 #32 ENSGT00940000155235 #33 ENSGT00940000161508 ENSGT01030000234607.A.b #34 Hystricomorpha DUPLICATION Hystricomorpha ANCESTRAL SPECIES 28 ENSGT00720000108792.B #7 ENSGT00940000155053 #8 ENSGT00940000157137 #9 ENSGT00940000154695 #10 ENSGT00940000157192 #11 ENSGT00530000063186.b.b #12 ENSGT01030000234570.d.a #13 ENSGT00940000157652 #14 ENSGT00530000063688.a #15 ENSGT00390000001447 #16 ENSGT00640000091496 #17 ENSGT00940000156597.b #18 ENSGT00940000159094 #20 ENSGT00940000156307.b #21 ENSGT00390000012547.b.c ##22 ENSGT00390000012547.b.d #22 ENSGT00390000004840 #23 ENSGT00940000156190.h #24 ENSGT00940000156190.g #25 ENSGT00940000159232.h.b #26 ENSGT00940000158720.c.b ENSGT00940000159743 #27 ENSGT00940000162639 #28 ENSGT00940000154453.b.b #29 ENSGT00940000157249 #31 ENSGT00940000155408 #32 ENSGT00940000155235 #33 ENSGT01030000234607.A.b #34 ENSGT00530000063410.b #35 ENSGT00940000162403 #36 ENSGT00390000015769.B Hystricomorpha_a ANCESTRAL SPECIES 67 ENSGT00940000156532 ENSGT00720000108792.B #7 ENSGT00940000155053 #8 ENSGT00940000157137 #9 ENSGT00940000154695 #10 ENSGT00940000157192 #11 ENSGT00530000063186.b.b #12 ENSGT01030000234570.d.a #13 ENSGT00940000157652 #14 ENSGT00530000063688.a #15 ENSGT00390000001447 #16 ENSGT00640000091496 #17 ENSGT00940000156597.b #18 ENSGT00940000159094 #20 ENSGT00940000156307.b #21 ENSGT00390000012547.b.d #22 ENSGT00390000004840 #23 ENSGT00940000156190.h #24 ENSGT00940000156190.g #25 ENSGT00940000159232.h.b #26 ENSGT00940000159743 #27 ENSGT00940000162639 #28 ENSGT00940000154453.b.b #29 ENSGT00940000157249 #31 ENSGT00940000155408 #32 ENSGT00940000155235 #33 ENSGT01030000234607.A.b #34 ENSGT00530000063410.b #35 ENSGT00940000162403 #36 ENSGT00940000158781 #37 ENSGT00940000160642 Hystricomorpha_b ANCESTRAL SPECIES 52 ENSGT00940000156532 ENSGT00720000108792.B #7 ENSGT00940000155053 #8 ENSGT00940000157137 #9 ENSGT00940000154695 #10 ENSGT00940000157192 #11 ENSGT00530000063186.b.b #12 ENSGT01030000234570.d.a #13 ENSGT00940000157652 #14 ENSGT00530000063688.a #15 ENSGT00390000001447 #16 ENSGT00640000091496 #17 ENSGT00940000156597.b #18 ENSGT00940000159094 #20 ENSGT00940000156307.b #21 ENSGT00390000012547.b.d #22 ENSGT00390000004840 #23 ENSGT00940000156190.h #24 ENSGT00940000156190.g #25 ENSGT00940000159232.h.b #26 ENSGT00940000159743 #27 ENSGT00940000162639 #28 ENSGT00940000154453.b.b #29 ENSGT00940000157249 #31 ENSGT00940000155408 #32 ENSGT00940000155235 #33 ENSGT01030000234607.A.b #34 ENSGT00530000063410.b #35 ENSGT00940000162403 #36 ENSGT00940000158781 #37 ENSGT00940000160642 Long-tailed chinchilla MODERN SPECIES 164 VWC2L (ENSCLAG00000004321) #7 ENSCLAG00000004744 #8 IKZF2 (ENSCLAG00000003632) #9 ERBB4 (ENSCLAG00000006948) #10 CPS1 (ENSCLAG00000003104) #11 LANCL1 (ENSCLAG00000005272) #12 MYL1 (ENSCLAG00000004096) #13 ACADL (ENSCLAG00000004230) #14 KANSL1L (ENSCLAG00000005749) #15 ENSCLAG00000003444 #16 UNC80 (ENSCLAG00000004587) #17 MAP2 (ENSCLAG00000003473) #18 ENSCLAG00000003083 #19 PTH2R (ENSCLAG00000003358) #20 PIKFYVE (ENSCLAG00000005225) #21 IDH1 (ENSCLAG00000013186) #22 C2orf80 (ENSCLAG00000012137) #23 CRYGA (ENSCLAG00000013039) #24 ENSCLAG00000010298 #25 CRYGC (ENSCLAG00000010342) #26 PLEKHM3 (ENSCLAG00000010825) #27 FZD5 (ENSCLAG00000008821) #28 ENSCLAG00000004502 #29 ENSCLAG00000005432 #30 METTL21A (ENSCLAG00000005572) #31 CREB1 (ENSCLAG00000005853) #32 KLF7 (ENSCLAG00000006083) #33 FASTKD2 (ENSCLAG00000007036) #34 MDH1B (ENSCLAG00000003385) #35 DYTN (ENSCLAG00000003705) #36 ADAM23 (ENSCLAG00000004674) #37 Degu DUPLICATION Degu MODERN SPECIES 216 ENSODEG00000002756 ENSODEG00000002722 #22 ENSODEG00000002633 PCDH9 (ENSODEG00000002576) ENSODEG00000018812 Degu MODERN SPECIES 71 ENSODEG00000007585 LRRN1 (ENSODEG00000007430) ENSODEG00000006737 ENSODEG00000008720 TRNT1 (ENSODEG00000007597) IL5RA (ENSODEG00000006715) CNTN4 (ENSODEG00000007155) CNTN6 (ENSODEG00000006499) ENSODEG00000007284 ENSODEG00000019383 CHL1 (ENSODEG00000010169) ENSODEG00000019392 CNTN3 (ENSODEG00000006512) PDZRN3 (ENSODEG00000008618) ENSODEG00000006984 ENSODEG00000006618 #22 ENSODEG00000007939 #19 ENSODEG00000007497 ENSODEG00000019359 GXYLT2 (ENSODEG00000008178) SHQ1 (ENSODEG00000009192) RYBP (ENSODEG00000008699) PROK2 (ENSODEG00000007144) GPR27 (ENSODEG00000006497) EIF4E3 (ENSODEG00000006191) FOXP1 (ENSODEG00000007047) MDFIC2 (ENSODEG00000006638) MITF (ENSODEG00000009287) ENSODEG00000006902 FRMD4B (ENSODEG00000005588) LMOD3 (ENSODEG00000005409) Guinea pig MODERN SPECIES 13 BARD1 (ENSCPOG00000011499) VWC2L (ENSCPOG00000013515) #7 IKZF2 (ENSCPOG00000013506) #9 ERBB4 (ENSCPOG00000011232) #10 ENSCPOG00000035740 CPS1 (ENSCPOG00000004146) #11 LANCL1 (ENSCPOG00000009439) #12 MYL1 (ENSCPOG00000009446) #13 ACADL (ENSCPOG00000009871) #14 KANSL1L (ENSCPOG00000001503) #15 ENSCPOG00000001502 #16 UNC80 (ENSCPOG00000008641) #17 ENSCPOG00000040677 #18 PTH2R (ENSCPOG00000027198) #20 PIKFYVE (ENSCPOG00000003863) #21 IDH1 (ENSCPOG00000013587) #22 C2orf80 (ENSCPOG00000015050) #23 CRYGA (ENSCPOG00000015047) #24 ENSCPOG00000022025 #25 CRYGC (ENSCPOG00000000186) #26 PLEKHM3 (ENSCPOG00000004119) #27 FZD5 (ENSCPOG00000038146) #28 ENSCPOG00000035156 #29 METTL21A (ENSCPOG00000034803) #31 CREB1 (ENSCPOG00000010778) #32 KLF7 (ENSCPOG00000009080) #33 FASTKD2 (ENSCPOG00000005624) #34 MDH1B (ENSCPOG00000005608) #35 ADAM23 (ENSCPOG00000005871) #37 EEF1B2 (ENSCPOG00000014496) NDUFS1 (ENSCPOG00000005555) Naked mole-rat female DUPLICATION Naked mole-rat female MODERN SPECIES ENSHGLG00000021037 ENSHGLG00000020868 ENSHGLG00000019647 ENSHGLG00000044369 ENSHGLG00000044639 ENSHGLG00000042688 ENSHGLG00000019680 ENSHGLG00000020888 ENSHGLG00000034476 ENSHGLG00000041081 ENSHGLG00000018891 ENSHGLG00000032616 ENSHGLG00000035640 ENSHGLG00000045321 ENSHGLG00000042358 ENSHGLG00000000746 #22 ENSHGLG00000020121 ENSHGLG00000032106 ENSHGLG00000041333 ENSHGLG00000044343 ENSHGLG00000035030 ENSHGLG00000019642 ENSHGLG00000009764 ENSHGLG00000036657 ENSHGLG00000044549 ENSHGLG00000000510 ENSHGLG00000019985 ENSHGLG00000046356 ENSHGLG00000009234 ENSHGLG00000043662 ENSHGLG00000041448 Naked mole-rat female MODERN SPECIES 23 EGR4 (ENSHGLG00000009021) FBXO41 (ENSHGLG00000010102) CCT7 (ENSHGLG00000011761) PRADC1 (ENSHGLG00000015353) SMYD5 (ENSHGLG00000015439) RAB11FIP5 (ENSHGLG00000016021) SFXN5 (ENSHGLG00000007851) EMX1 (ENSHGLG00000036309) SPR (ENSHGLG00000041182) ENSHGLG00000006121 ENSHGLG00000040821 ENSHGLG00000032593 ENSHGLG00000039406 EXOC6B (ENSHGLG00000011639) CYP26B1 (ENSHGLG00000016604) ENSHGLG00000043383 #22 DYSF (ENSHGLG00000007256) ZNF638 (ENSHGLG00000015789) ENSHGLG00000050708 ENSHGLG00000039175 ENSHGLG00000015917 TEX261 (ENSHGLG00000047338) ANKRD53 (ENSHGLG00000015981) ATP6V1B1 (ENSHGLG00000034993) VAX2 (ENSHGLG00000038768) CD207 (ENSHGLG00000017278) CLEC4F (ENSHGLG00000015223) FIGLA (ENSHGLG00000015232) ADD2 (ENSHGLG00000015246) TGFA (ENSHGLG00000006181) FAM136A (ENSHGLG00000043927) Hystricomorpha ANCESTRAL SPECIES 28 ENSGT00940000156532 ENSGT00720000108792.B #7 ENSGT00940000155053 #8 ENSGT00940000157137 #9 ENSGT00940000154695 #10 ENSGT00940000157192 #11 ENSGT00530000063186.b.b #12 ENSGT01030000234570.d.a #13 ENSGT00940000157652 #14 ENSGT00530000063688.a #15 ENSGT00390000001447 #16 ENSGT00640000091496 #17 ENSGT00940000156597.b #18 ENSGT00940000159094 #20 ENSGT00940000156307.b #21 ENSGT00390000012547.b.c ##22 ENSGT00390000012547.b.d #22 ENSGT00390000004840 #23 ENSGT00940000156190.h #24 ENSGT00940000156190.g #25 ENSGT00940000159232.h.b #26 ENSGT00940000158720.c.b ENSGT00940000159743 #27 ENSGT00940000162639 #28 ENSGT00940000154453.b.b #29 ENSGT00940000157249 #31 ENSGT00940000155408 #32 ENSGT00940000155235 #33 ENSGT01030000234607.A.b #34 ENSGT00530000063410.b #35 ENSGT00940000162403 #36 Hystricomorpha_a ANCESTRAL SPECIES ENSGT00390000012547.b.c ##22 Hystricomorpha_b ANCESTRAL SPECIES ENSGT00390000012547.b.c ##22 Degu MODERN SPECIES 57 ENSODEG00000013776 ENSODEG00000008980 CPS1 (ENSODEG00000007917) #11 ENSODEG00000008576 LANCL1 (ENSODEG00000013138) #12 MYL1 (ENSODEG00000007814) #13 ACADL (ENSODEG00000008088) #14 KANSL1L (ENSODEG00000008832) #15 ENSODEG00000008423 #16 UNC80 (ENSODEG00000009853) #17 MAP2 (ENSODEG00000009342) #18 ENSODEG00000019840 ENSODEG00000019756 PTH2R (ENSODEG00000010800) #20 PIKFYVE (ENSODEG00000008877) #21 ENSODEG00000009512 ##22 C2orf80 (ENSODEG00000009684) #23 CRYGA (ENSODEG00000009878) #24 ENSODEG00000009966 #25 CRYGC (ENSODEG00000008672) #26 ENSODEG00000019682 ENSODEG00000019703 PLEKHM3 (ENSODEG00000010028) #27 FZD5 (ENSODEG00000019794) #28 ENSODEG00000009393 #29 METTL21A (ENSODEG00000009859) #31 CREB1 (ENSODEG00000010264) #32 ENSODEG00000009302 ENSODEG00000009956 KLF7 (ENSODEG00000010345) #33 FASTKD2 (ENSODEG00000009880) #34 Naked mole-rat female MODERN SPECIES 17 LANCL1 (ENSHGLG00000036257) #12 MYL1 (ENSHGLG00000048085) #13 ENSHGLG00000004628 #14 KANSL1L (ENSHGLG00000005747) #15 ENSHGLG00000008127 #16 ENSHGLG00000018871 #17 ENSHGLG00000009762 #18 ENSHGLG00000044133 ENSHGLG00000008713 ENSHGLG00000037435 ENSHGLG00000012419 ENSHGLG00000012576 ENSHGLG00000020810 ENSHGLG00000005131 #20 PIKFYVE (ENSHGLG00000005275) #21 IDH1 (ENSHGLG00000006766) ##22 ENSHGLG00000047720 ENSHGLG00000036358 C2orf80 (ENSHGLG00000007437) #23 ENSHGLG00000007763 #25 ENSHGLG00000008764 #26 ENSHGLG00000009451 ENSHGLG00000017030 #27 ENSHGLG00000003916 ENSHGLG00000003008 ENSHGLG00000007875 ENSHGLG00000009221 PTPDC1 (ENSHGLG00000002865) ENSHGLG00000003466 ENSHGLG00000048848 ENSHGLG00000048279 Sciuridae ANCESTRAL SPECIES 10 ENSGT00720000108792.B #7 ENSGT00940000155053 #8 ENSGT00940000157137 #9 ENSGT00940000154695 #10 ENSGT00940000157192 #11 ENSGT00530000063186.b.b #12 ENSGT01030000234570.d.a #13 ENSGT00940000157652 #14 ENSGT00530000063688.a #15 ENSGT00390000001447 #16 ENSGT00640000091496 #17 ENSGT00940000156597.b #18 ENSGT00940000163272.a.a ENSGT00940000159094 #20 ENSGT00940000156307.b #21 ENSGT00390000012547.b #22 ENSGT00390000004840 #23 ENSGT00940000156190.h #24 ENSGT00940000159232.h.a ##26 ENSGT00940000159232.h.b #26 ENSGT00940000158720.c.a ENSGT00940000163272.a.b ENSGT00940000159743 #27 ENSGT00940000162639 #28 ENSGT00940000154453.b.a.b ##29 ENSGT00940000157249 #31 ENSGT00940000155408 #32 ENSGT00940000155235 #33 ENSGT00940000161508 ENSGT01030000234607.A.b #34 ENSGT00530000063410.b #35 Marmotini ANCESTRAL SPECIES 2 ENSGT00720000108792.B #7 ENSGT00940000155053 #8 ENSGT00940000157137 #9 ENSGT00940000154695 #10 ENSGT00940000157192 #11 ENSGT00530000063186.b.b #12 ENSGT01030000234570.d.a #13 ENSGT00940000157652 #14 ENSGT00530000063688.a #15 ENSGT00390000001447 #16 ENSGT00640000091496 #17 ENSGT00940000156597.b #18 ENSGT00940000163272.a.a ENSGT00940000159094 #20 ENSGT00940000156307.b #21 ENSGT00390000012547.b #22 ENSGT00390000004840 #23 ENSGT00940000156190.h #24 ENSGT00940000159232.h.a ##26 ENSGT00940000159232.h.b #26 ENSGT00940000163272.a.b ENSGT00940000159743 #27 ENSGT00940000162639 #28 ENSGT00940000154453.b.a.b ##29 ENSGT00940000157249 #31 ENSGT00940000155408 #32 ENSGT00940000155235 #33 ENSGT00940000161508 ENSGT01030000234607.A.b #34 ENSGT00530000063410.b #35 ENSGT00940000162403 #36 Alpin marmot MODERN SPECIES 8 IKZF2 (ENSMMMG00000016182) #9 ENSMMMG00000016161 ENSMMMG00000016149 ENSMMMG00000016133 #10 CPS1 (ENSMMMG00000016097) #11 LANCL1 (ENSMMMG00000016069) #12 MYL1 (ENSMMMG00000016062) #13 ACADL (ENSMMMG00000015744) #14 KANSL1L (ENSMMMG00000015671) #15 ENSMMMG00000015656 #16 UNC80 (ENSMMMG00000015490) #17 MAP2 (ENSMMMG00000015268) #18 ENSMMMG00000015249 PTH2R (ENSMMMG00000015216) #20 PIKFYVE (ENSMMMG00000015121) #21 IDH1 (ENSMMMG00000015109) #22 C2orf80 (ENSMMMG00000015100) #23 CRYGB (ENSMMMG00000015095) ##26 CRYGC (ENSMMMG00000015089) #26 ENSMMMG00000015075 PLEKHM3 (ENSMMMG00000015063) #27 ENSMMMG00000015050 CCNYL1 (ENSMMMG00000015025) ##29 METTL21A (ENSMMMG00000015010) #31 CREB1 (ENSMMMG00000014914) #32 KLF7 (ENSMMMG00000014897) #33 CPO (ENSMMMG00000014874) FASTKD2 (ENSMMMG00000014857) #34 MDH1B (ENSMMMG00000014852) #35 ENSMMMG00000014844 DYTN (ENSMMMG00000014828) #36 Marmotini_b ANCESTRAL SPECIES 274 ENSGT00940000159094 #20 ENSGT00940000156307.b #21 ENSGT00390000012547.b #22 ENSGT00390000004840 #23 ENSGT00940000156190.h #24 ENSGT00940000159232.h.a ##26 ENSGT00940000158720.c.a Squirrel MODERN SPECIES 533 PTH2R (ENSSTOG00000012785) #20 PIKFYVE (ENSSTOG00000023868) #21 IDH1 (ENSSTOG00000033564) #22 C2orf80 (ENSSTOG00000008303) #23 CRYGA (ENSSTOG00000032300) #24 ENSSTOG00000003676 ##26 ENSSTOG00000033162 Eurasian red squirrel MODERN SPECIES 12 MYL1 (ENSSVLG00005005436) #13 ENSSVLG00005005403 HNRNPA2B1 (ENSSVLG00005005387) ACADL (ENSSVLG00005005352) #14 KANSL1L (ENSSVLG00005005286) #15 ENSSVLG00005005150 #16 ENSSVLG00005005077 UNC80 (ENSSVLG00005004348) #17 MAP2 (ENSSVLG00005003888) #18 ENSSVLG00005003797 ENSSVLG00005003780 ENSSVLG00005003758 ENSSVLG00005003733 PTH2R (ENSSVLG00005003700) #20 PIKFYVE (ENSSVLG00005003549) #21 IDH1 (ENSSVLG00005003436) #22 C2orf80 (ENSSVLG00005003394) #23 CRYGA (ENSSVLG00005003355) #24 CRYGB (ENSSVLG00005003340) ##26 CRYGC (ENSSVLG00005003325) #26 CRYGD (ENSSVLG00005003312) ENSSVLG00005003302 ENSSVLG00005003291 PLEKHM3 (ENSSVLG00005003272) #27 FZD5 (ENSSVLG00005003258) #28 ENSSVLG00005003181 ##29 METTL21A (ENSSVLG00005003134) #31 CREB1 (ENSSVLG00005003093) #32 KLF7 (ENSSVLG00005003049) #33 CPO (ENSSVLG00005003015) FASTKD2 (ENSSVLG00005002985) #34