Vertebrata	ANCESTRAL SPECIES																	ENSGT00390000012721 #22
Gnathostomata	DUPLICATION
Gnathostomata	ANCESTRAL SPECIES	442												ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25
Euteleostomi	ANCESTRAL SPECIES	12	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000003706.a.b.b	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Sarcopterygii	ANCESTRAL SPECIES	11	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000003706.a.b.b	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Tetrapoda	ANCESTRAL SPECIES		ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000003706.a.b.b	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Amniota	ANCESTRAL SPECIES		ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000003706.a.b.b	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Mammalia	ANCESTRAL SPECIES		ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000003706.a.b.b	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Theria	ANCESTRAL SPECIES	1	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000003706.a.b.b	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Eutheria	ANCESTRAL SPECIES	17	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000003706.a.b.b	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Boreoeutheria	ANCESTRAL SPECIES	21	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000003706.a.b.b	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00900000143501	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Euarchontoglires	ANCESTRAL SPECIES	21	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00900000143501	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Primates	ANCESTRAL SPECIES	26	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00900000143501	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Haplorrhini	ANCESTRAL SPECIES	28	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00900000143501	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Simiiformes	ANCESTRAL SPECIES	22	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00900000143501	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Catarrhini	ANCESTRAL SPECIES	21	ENSGT00390000018369.hb.b	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00900000143501	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00900000141067.e.a	ENSGT00910000147010	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00910000147378	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34
Hominoidea	ANCESTRAL SPECIES	21	ENSGT00390000018369.hb.b	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00550000074988.v	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00900000141067.e.a	ENSGT00910000147010	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00910000147378	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34
Hominidae	ANCESTRAL SPECIES	23	ENSGT00390000018369.hb.b	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00550000074988.v	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00900000141067.e.a	ENSGT00910000147010	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00910000147378	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	23	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00940000155924.b.n	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00940000164467.d.b.a	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00550000074988.v	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00900000141067.e.a	ENSGT00910000147010	ENSGT00940000158453.a #26	ENSGT00940000155099.b	ENSGT00390000016209.d	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00910000147378	ENSGT00940000162795 #32
Homo/Pan group	ANCESTRAL SPECIES	22	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00940000155924.b.n	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00940000164467.d.b.a	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155099.b	ENSGT00390000016209.d	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35
Human	MODERN SPECIES	4	UCHL3 (ENSG00000118939) #7	LMO7 (ENSG00000136153) #8	KCTD12 (ENSG00000178695) #9	ACOD1 (ENSG00000102794) #10	CLN5 (ENSG00000102805) #11	ENSG00000283208 #12	FBXL3 (ENSG00000005812) #13	MYCBP2 (ENSG00000005810) #14	ENSG00000288716 #15	SCEL (ENSG00000136155) #16	SLAIN1 (ENSG00000139737) #17	EDNRB (ENSG00000136160) #18	POU4F1 (ENSG00000152192) #19	OBI1 (ENSG00000152193) #20	RBM26 (ENSG00000139746) #21	NDFIP2 (ENSG00000102471) #22	SPRY2 (ENSG00000136158) #23	SLITRK1 (ENSG00000178235) #24	SLITRK6 (ENSG00000184564) #25	SLITRK5 (ENSG00000165300) #26	GPC5 (ENSG00000179399) #27	GPC6 (ENSG00000183098) #28	DCT (ENSG00000080166) #29	TGDS (ENSG00000088451) #30	GPR180 (ENSG00000152749) #31	SOX21 (ENSG00000125285) #32	ABCC4 (ENSG00000125257) #33	CLDN10 (ENSG00000134873) #34	DZIP1 (ENSG00000134874) #35	DNAJC3 (ENSG00000102580) #36	UGGT2 (ENSG00000102595) #37
Pan	ANCESTRAL SPECIES	22	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00940000155924.b.n	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00940000164467.d.b.a	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000155762.kb.b	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00900000141067.e.a	ENSGT00940000158453.a #26	ENSGT00940000155099.b	ENSGT00390000016209.d	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00910000147378	ENSGT00940000153931.b #33
Bonobo	MODERN SPECIES	4	ENSPPAG00000033550	UCHL3 (ENSPPAG00000034468) #7	LMO7 (ENSPPAG00000037671) #8	ENSPPAG00000027912 #9	ACOD1 (ENSPPAG00000029721) #10	ENSPPAG00000042251	CLN5 (ENSPPAG00000003389) #11	FBXL3 (ENSPPAG00000027851) #13	MYCBP2 (ENSPPAG00000041104) #14	SCEL (ENSPPAG00000030818) #16	ENSPPAG00000041856 #17	EDNRB (ENSPPAG00000027624) #18	OBI1 (ENSPPAG00000010176) #20	ENSPPAG00000026837	RBM26 (ENSPPAG00000027293) #21	NDFIP2 (ENSPPAG00000031610) #22	SPRY2 (ENSPPAG00000035406) #23	ENSPPAG00000010217	SLITRK1 (ENSPPAG00000037587) #24	SLITRK6 (ENSPPAG00000012611) #25	ENSPPAG00000040387	SLITRK5 (ENSPPAG00000023250) #26	ENSPPAG00000036461	ENSPPAG00000041709	GPC5 (ENSPPAG00000028689) #27	GPC6 (ENSPPAG00000037789) #28	DCT (ENSPPAG00000025883) #29	TGDS (ENSPPAG00000039020) #30	GPR180 (ENSPPAG00000041567) #31	ENSPPAG00000030722	ABCC4 (ENSPPAG00000014419) #33
Chimpanzee	MODERN SPECIES	4	LMO7 (ENSPTRG00000005935) #8	LMO7DN (ENSPTRG00000005936)	ACOD1 (ENSPTRG00000005939) #10	ENSPTRG00000049775	CLN5 (ENSPTRG00000005940) #11	FBXL3 (ENSPTRG00000022568) #13	MYCBP2 (ENSPTRG00000005943) #14	SCEL (ENSPTRG00000005944) #16	ENSPTRG00000047845	SLAIN1 (ENSPTRG00000005945) #17	EDNRB (ENSPTRG00000005946) #18	POU4F1 (ENSPTRG00000031154) #19	OBI1 (ENSPTRG00000005948) #20	ENSPTRG00000044444	RBM26 (ENSPTRG00000005949) #21	NDFIP2 (ENSPTRG00000005950) #22	SPRY2 (ENSPTRG00000005951) #23	ENSPTRG00000046906	SLITRK1 (ENSPTRG00000005954) #24	SLITRK6 (ENSPTRG00000005955) #25	ENSPTRG00000050136	SLITRK5 (ENSPTRG00000005957) #26	ENSPTRG00000052599	ENSPTRG00000046875	GPC5 (ENSPTRG00000005961) #27	GPC6 (ENSPTRG00000005963) #28	DCT (ENSPTRG00000005966) #29	TGDS (ENSPTRG00000005967) #30	GPR180 (ENSPTRG00000048877) #31	ENSPTRG00000047894	ABCC4 (ENSPTRG00000005971) #33
Gorilla	MODERN SPECIES	4	ENSGGOG00000026015	ENSGGOG00000037865 #9	ACOD1 (ENSGGOG00000014878) #10	ENSGGOG00000040887	CLN5 (ENSGGOG00000013888) #11	FBXL3 (ENSGGOG00000007005) #13	MYCBP2 (ENSGGOG00000010778) #14	SCEL (ENSGGOG00000001153) #16	ENSGGOG00000025553	SLAIN1 (ENSGGOG00000001158) #17	EDNRB (ENSGGOG00000014423) #18	ENSGGOG00000037241 #19	OBI1 (ENSGGOG00000014440) #20	ENSGGOG00000024563	RBM26 (ENSGGOG00000005994) #21	NDFIP2 (ENSGGOG00000043636) #22	SPRY2 (ENSGGOG00000011148) #23	SLITRK1 (ENSGGOG00000024834) #24	SLITRK6 (ENSGGOG00000023334) #25	ENSGGOG00000038856	ENSGGOG00000041968	SLITRK5 (ENSGGOG00000009585) #26	ENSGGOG00000022747	ENSGGOG00000022614	ENSGGOG00000041124	GPC5 (ENSGGOG00000015066) #27	GPC6 (ENSGGOG00000028184) #28	DCT (ENSGGOG00000016275) #29	TGDS (ENSGGOG00000010704) #30	GPR180 (ENSGGOG00000026438) #31	ENSGGOG00000038534
Orangutan	MODERN SPECIES	4	ENSPPYG00000035189	TBC1D4 (ENSPPYG00000005417)	ENSPPYG00000034872	LMO7 (ENSPPYG00000005419) #8	KCTD12 (ENSPPYG00000005421) #9	ACOD1 (ENSPPYG00000005423) #10	CLN5 (ENSPPYG00000031967) #11	FBXL3 (ENSPPYG00000005425) #13	MYCBP2 (ENSPPYG00000029658) #14	SCEL (ENSPPYG00000005426) #16	SLAIN1 (ENSPPYG00000005427) #17	EDNRB (ENSPPYG00000029747) #18	POU4F1 (ENSPPYG00000005428) #19	OBI1 (ENSPPYG00000005429) #20	RBM26 (ENSPPYG00000005430) #21	NDFIP2 (ENSPPYG00000005431) #22	SLITRK1 (ENSPPYG00000005434) #24	SLITRK6 (ENSPPYG00000005436) #25	SLITRK5 (ENSPPYG00000005437) #26	GPC5 (ENSPPYG00000005441) #27	GPC6 (ENSPPYG00000005442) #28	DCT (ENSPPYG00000005443) #29	TGDS (ENSPPYG00000005444) #30	GPR180 (ENSPPYG00000005445) #31	SOX21 (ENSPPYG00000005446) #32	ABCC4 (ENSPPYG00000005448) #33	CLDN10 (ENSPPYG00000005449) #34	DZIP1 (ENSPPYG00000005450) #35	DNAJC3 (ENSPPYG00000005451) #36	UGGT2 (ENSPPYG00000005452) #37	HS6ST3 (ENSPPYG00000032530)
Gibbon	MODERN SPECIES	20	ENSNLEG00000029199	ENSNLEG00000031435	UCHL3 (ENSNLEG00000027639) #7	LMO7 (ENSNLEG00000016172) #8	ENSNLEG00000027709 #9	ACOD1 (ENSNLEG00000016240) #10	ENSNLEG00000016242 #11	FBXL3 (ENSNLEG00000016246) #13	MYCBP2 (ENSNLEG00000016250) #14	SCEL (ENSNLEG00000016322) #16	SLAIN1 (ENSNLEG00000016365) #17	EDNRB (ENSNLEG00000016385) #18	ENSNLEG00000016405 #19	OBI1 (ENSNLEG00000016406) #20	RBM26 (ENSNLEG00000016429) #21	NDFIP2 (ENSNLEG00000016460) #22	ENSNLEG00000031272	SPRY2 (ENSNLEG00000034212) #23	SLITRK1 (ENSNLEG00000019091) #24	ENSNLEG00000034721	SLITRK6 (ENSNLEG00000016473) #25	ENSNLEG00000016480	ENSNLEG00000030993	SLITRK5 (ENSNLEG00000016482) #26	ENSNLEG00000033876	ENSNLEG00000016486	GPC5 (ENSNLEG00000016490) #27	GPC6 (ENSNLEG00000016493) #28	DCT (ENSNLEG00000016495) #29	TGDS (ENSNLEG00000016509) #30	GPR180 (ENSNLEG00000016532) #31
Cercopithecidae	ANCESTRAL SPECIES	23	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00950000183030.m.a.a.b.b.a.b.b.b	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00900000143501	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00900000141067.e.a	ENSGT00910000147010	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00910000147378	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34
Rhinopithecus	ANCESTRAL SPECIES	483								ENSGT00530000063872.B #16	ENSGT00950000183030.m.a.a.b.b.a.b.b.b	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00900000143501	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23
Golden snub-nosed monkey	MODERN SPECIES	986											POU4F1 (ENSRROG00000030270) #19	OBI1 (ENSRROG00000043846) #20	ENSRROG00000037685	RBM26 (ENSRROG00000045798) #21	ENSRROG00000034894	NDFIP2 (ENSRROG00000039949) #22	SPRY2 (ENSRROG00000032352) #23
Black snub-nosed monkey	MODERN SPECIES	366								SCEL (ENSRBIG00000038143) #16	ENSRBIG00000039402	SLAIN1 (ENSRBIG00000041323) #17	EDNRB (ENSRBIG00000034589) #18	POU4F1 (ENSRBIG00000033778) #19	OBI1 (ENSRBIG00000043533) #20	ENSRBIG00000040264	RBM26 (ENSRBIG00000036168) #21	NDFIP2 (ENSRBIG00000033897) #22	SPRY2 (ENSRBIG00000023006) #23
Cercopithecinae	ANCESTRAL SPECIES	20	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00950000183030.m.a.a.b.b.a.b.b.b	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00550000074988.v	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00900000141067.e.a	ENSGT00910000147010	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00910000147378	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34
Vervet Monkey	MODERN SPECIES	22	KLF12 (ENSCSAG00000017612)	TBC1D4 (ENSCSAG00000017607)	COMMD6 (ENSCSAG00000017600)	UCHL3 (ENSCSAG00000017598) #7	LMO7 (ENSCSAG00000017595) #8	KCTD12 (ENSCSAG00000018622) #9	ACOD1 (ENSCSAG00000017593) #10	CLN5 (ENSCSAG00000017592) #11	FBXL3 (ENSCSAG00000017589) #13	MYCBP2 (ENSCSAG00000017585) #14	SCEL (ENSCSAG00000017575) #16	SLAIN1 (ENSCSAG00000017572) #17	EDNRB (ENSCSAG00000017566) #18	OBI1 (ENSCSAG00000017565) #20	RBM26 (ENSCSAG00000017563) #21	NDFIP2 (ENSCSAG00000017557) #22	SPRY2 (ENSCSAG00000018623) #23	ENSCSAG00000000230	SLITRK1 (ENSCSAG00000000229) #24	SLITRK6 (ENSCSAG00000000228) #25	SLITRK5 (ENSCSAG00000000227) #26	DCT (ENSCSAG00000017543) #29	TGDS (ENSCSAG00000017539) #30	GPR180 (ENSCSAG00000017536) #31	SOX21 (ENSCSAG00000000226) #32	ABCC4 (ENSCSAG00000017533) #33	CLDN10 (ENSCSAG00000017528) #34	DZIP1 (ENSCSAG00000017526) #35	DNAJC3 (ENSCSAG00000017525) #36	UGGT2 (ENSCSAG00000017524) #37	ENSCSAG00000000225
Cercopithecinae_a	ANCESTRAL SPECIES	19	ENSGT00530000064023.b.g.b	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00950000183030.m.a.a.b.b.a.b.b.b	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00550000074988.v	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000154674.i.b.b	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00900000141067.e.a	ENSGT00910000147010	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00910000147378	ENSGT00940000162795 #32	ENSGT00940000153931.b #33
Cercopithecinae_b	ANCESTRAL SPECIES	42	ENSGT00530000064023.b.g.b	ENSGT00950000183159.b #8	ENSGT00390000018604	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00950000183030.m.a.a.b.b.a.b.b.b	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00550000074988.v	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000154674.i.b.b	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00900000141067.e.a	ENSGT00910000147010	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00910000147378	ENSGT00940000162795 #32	ENSGT00940000153931.b #33
Olive baboon	MODERN SPECIES	6	KCTD12 (ENSPANG00000037848) #9	ENSPANG00000041638	ENSPANG00000046308	ACOD1 (ENSPANG00000010191) #10	CLN5 (ENSPANG00000009178) #11	FBXL3 (ENSPANG00000016434) #13	MYCBP2 (ENSPANG00000016436) #14	ENSPANG00000042841	SCEL (ENSPANG00000022423) #16	ENSPANG00000038962	SLAIN1 (ENSPANG00000006284) #17	EDNRB (ENSPANG00000009470) #18	OBI1 (ENSPANG00000015545) #20	ENSPANG00000037860	RBM26 (ENSPANG00000012979) #21	NDFIP2 (ENSPANG00000002389) #22	SPRY2 (ENSPANG00000024849) #23	ENSPANG00000049934	ENSPANG00000037096	ENSPANG00000049415	ENSPANG00000038720	ENSPANG00000041737	ENSPANG00000031941	SLITRK1 (ENSPANG00000006605) #24	ENSPANG00000037928	SLITRK6 (ENSPANG00000013285) #25	SLITRK5 (ENSPANG00000012750) #26	ENSPANG00000044812	ENSPANG00000047478	ENSPANG00000038257	GPC5 (ENSPANG00000004995) #27
Cercopithecinae_d	ANCESTRAL SPECIES	200				ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00950000183030.m.a.a.b.b.a.b.b.b	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00550000074988.v	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23
Drill	MODERN SPECIES	1232												POU4F1 (ENSMLEG00000043740) #19	OBI1 (ENSMLEG00000034546) #20	ENSMLEG00000044469	RBM26 (ENSMLEG00000041714) #21	NDFIP2 (ENSMLEG00000026352) #22	SPRY2 (ENSMLEG00000039908) #23
Sooty mangabey	MODERN SPECIES	273					ACOD1 (ENSCATG00000033760) #10	CLN5 (ENSCATG00000034702) #11	FBXL3 (ENSCATG00000035653) #13	MYCBP2 (ENSCATG00000040478) #14	SCEL (ENSCATG00000030993) #16	SLAIN1 (ENSCATG00000032181) #17	EDNRB (ENSCATG00000029949) #18	POU4F1 (ENSCATG00000037340) #19	OBI1 (ENSCATG00000012342) #20	ENSCATG00000042836	RBM26 (ENSCATG00000032865) #21	NDFIP2 (ENSCATG00000037894) #22	SPRY2 (ENSCATG00000033876) #23	ENSCATG00000040085
Macaca	ANCESTRAL SPECIES	19	ENSGT00940000154925 #7	ENSGT00530000064023.b.g.b	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00950000183030.m.a.a.b.b.a.b.b.b	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000154674.i.b.b	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00910000147010	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35
Pig-tailed macaque	MODERN SPECIES	575	ENSMNEG00000028019	ACOD1 (ENSMNEG00000040520) #10	CLN5 (ENSMNEG00000043451) #11	FBXL3 (ENSMNEG00000040616) #13	MYCBP2 (ENSMNEG00000037256) #14	TMEM69 (ENSMNEG00000024479)	SCEL (ENSMNEG00000041182) #16	ENSMNEG00000031891	SLAIN1 (ENSMNEG00000030939) #17	EDNRB (ENSMNEG00000018786) #18	POU4F1 (ENSMNEG00000039785) #19	OBI1 (ENSMNEG00000030438) #20	ENSMNEG00000044457	ENSMNEG00000020751	RBM26 (ENSMNEG00000041892) #21	NDFIP2 (ENSMNEG00000022979) #22	SPRY2 (ENSMNEG00000040970) #23	ENSMNEG00000033802	ENSMNEG00000031547	SLITRK1 (ENSMNEG00000028229) #24	SLITRK6 (ENSMNEG00000005893) #25	ENSMNEG00000015827	SLITRK5 (ENSMNEG00000037869) #26
Macaca_a	ANCESTRAL SPECIES	19	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00940000153201.j.k.a.a.b.a.a.a.b.a	ENSGT00390000015318.e	ENSGT00940000163505.a.a.b.a.a.b.b.a.b.a	ENSGT00530000063872.B #16	ENSGT00950000183030.m.a.a.b.b.a.b.b.b	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000165870	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00910000147010	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00910000147378	ENSGT00940000163244.d.b.a.b.b.b.b.b.b.b.b.a.b.a.b.a.b.b.a.b.a.a.a	ENSGT00940000153931.b #33	ENSGT00940000155232 #34
Crab-eating macaque	MODERN SPECIES	8	CLN5 (ENSMFAG00000044623) #11	FBXL3 (ENSMFAG00000044754) #13	MYCBP2 (ENSMFAG00000031053) #14	ENSMFAG00000041856	ENSMFAG00000011600	ENSMFAG00000063467	SCEL (ENSMFAG00000030524) #16	ENSMFAG00000040919	SLAIN1 (ENSMFAG00000002894) #17	EDNRB (ENSMFAG00000001921) #18	POU4F1 (ENSMFAG00000064810) #19	OBI1 (ENSMFAG00000034310) #20	ENSMFAG00000028725	ENSMFAG00000027988	RBM26 (ENSMFAG00000044633) #21	NDFIP2 (ENSMFAG00000003559) #22	SPRY2 (ENSMFAG00000038994) #23	ENSMFAG00000002765	ENSMFAG00000055887	ENSMFAG00000004349	SLITRK1 (ENSMFAG00000000028) #24	SLITRK6 (ENSMFAG00000040915) #25	ENSMFAG00000054028	SLITRK5 (ENSMFAG00000040496) #26	ENSMFAG00000065726	ENSMFAG00000063182	ENSMFAG00000056979	ENSMFAG00000032951	GPC5 (ENSMFAG00000035829) #27	ENSMFAG00000047731	ENSMFAG00000062662
Rhesus	MODERN SPECIES	8	KCTD12 (ENSMMUG00000060210) #9	ACOD1 (ENSMMUG00000060734) #10	CLN5 (ENSMMUG00000053142) #11	FBXL3 (ENSMMUG00000021458) #13	MYCBP2 (ENSMMUG00000021459) #14	ENSMMUG00000021460	ENSMMUG00000030685	ENSMMUG00000064270	SCEL (ENSMMUG00000000048) #16	SLAIN1 (ENSMMUG00000000049) #17	EDNRB (ENSMMUG00000005131) #18	ENSMMUG00000062938	POU4F1 (ENSMMUG00000030683) #19	OBI1 (ENSMMUG00000011697) #20	RBM26 (ENSMMUG00000007529) #21	NDFIP2 (ENSMMUG00000051533) #22	SPRY2 (ENSMMUG00000018292) #23	ENSMMUG00000009018	ENSMMUG00000050001	ENSMMUG00000050190	SLITRK6 (ENSMMUG00000016317) #25	ENSMMUG00000052196	SLITRK5 (ENSMMUG00000002854) #26	ENSMMUG00000051250	ENSMMUG00000057596	ENSMMUG00000049397	GPC5 (ENSMMUG00000011376) #27	ENSMMUG00000054269	ENSMMUG00000059084	GPC6 (ENSMMUG00000000529) #28	DCT (ENSMMUG00000021817) #29
Platyrrhini	DUPLICATION
Platyrrhini	ANCESTRAL SPECIES	23	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00900000143501	ENSGT00510000046929.a #21	ENSGT00390000012721.b.k #22	ENSGT00390000002200.a.b.d	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00630000089910.ib.b.b	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35
Cebidae	ANCESTRAL SPECIES	26	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00900000143501	ENSGT00510000046929.a #21	ENSGT00390000012721.b.k #22	ENSGT00390000002200.a.b.d	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00730000111351	ENSGT00390000017146.b	ENSGT00950000182950.B	ENSGT00940000164099.a.a	ENSGT01000000214655	ENSGT00940000157953	ENSGT00390000016480	ENSGT00940000161271	ENSGT00940000160889	ENSGT00940000159927	ENSGT01030000234579.B.b	ENSGT00940000154652.e
Marmoset	MODERN SPECIES		KCTD12 (ENSCJAG00000041977) #9	ACOD1 (ENSCJAG00000021189) #10	ENSCJAG00000021191 #11	FBXL3 (ENSCJAG00000047401) #13	ENSCJAG00000066060	MYCBP2 (ENSCJAG00000021196) #14	SCEL (ENSCJAG00000021235) #16	SLAIN1 (ENSCJAG00000021252) #17	EDNRB (ENSCJAG00000021257) #18	ENSCJAG00000070949	POU4F1 (ENSCJAG00000040854) #19	OBI1 (ENSCJAG00000061059) #20	ENSCJAG00000085485	ENSCJAG00000051608	RBM26 (ENSCJAG00000021261) #21	NDFIP2 (ENSCJAG00000053620) #22	ENSCJAG00000072161	ENSCJAG00000062431	ENSCJAG00000022514 #23	ENSCJAG00000083019	ENSCJAG00000074100	SLITRK1 (ENSCJAG00000021725) #24	CHAMP1 (ENSCJAG00000019117)	UPF3A (ENSCJAG00000019102)	CDC16 (ENSCJAG00000019010)	ENSCJAG00000042504	ENSCJAG00000079000	RASA3 (ENSCJAG00000018972)	C13orf46 (ENSCJAG00000033547)	GAS6 (ENSCJAG00000018947)	TMEM255B (ENSCJAG00000044914)
Cebidae_a	ANCESTRAL SPECIES	28	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00900000143501	ENSGT00510000046929.a #21	ENSGT00390000012721.b.l #22	ENSGT00390000012721.b.k #22	ENSGT00390000002200.a.b.d	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24
Capuchin	MODERN SPECIES	223	MINK1 (ENSCCAG00000031762)	C17orf107 (ENSCCAG00000036976)	PLD2 (ENSCCAG00000031588)	C17orf114 (ENSCCAG00000030921)	PSMB6 (ENSCCAG00000019674)	GLTPD2 (ENSCCAG00000030059)	VMO1 (ENSCCAG00000022897)	TM4SF5 (ENSCCAG00000023689)	ENSCCAG00000029435	ZMYND15 (ENSCCAG00000038087)	CXCL16 (ENSCCAG00000027738)	ARRB2 (ENSCCAG00000020524)	PELP1 (ENSCCAG00000037754)	WSB1 (ENSCCAG00000034970)	NLRP1 (ENSCCAG00000020577)	ENSCCAG00000037229 #22	ZNF287 (ENSCCAG00000022521)	LRRC75A (ENSCCAG00000037157)	ENSCCAG00000020041	TRPV2 (ENSCCAG00000023144)	PIGL (ENSCCAG00000029532)	CENPV (ENSCCAG00000035209)	ENSCCAG00000033463	TTC19 (ENSCCAG00000035431)	ZSWIM7 (ENSCCAG00000030650)	ENSCCAG00000020588	ZNF286A (ENSCCAG00000027728)	TRIM16 (ENSCCAG00000027719)	ENSCCAG00000035101	ENSCCAG00000034580	ENSCCAG00000031396
Bolivian squirrel monkey	MODERN SPECIES	84	COMMD6 (ENSSBOG00000030996)	ENSSBOG00000022874 #7	LMO7 (ENSSBOG00000024683) #8	ACOD1 (ENSSBOG00000032592) #10	CLN5 (ENSSBOG00000029854) #11	FBXL3 (ENSSBOG00000026201) #13	MYCBP2 (ENSSBOG00000028707) #14	SCEL (ENSSBOG00000014091) #16	SLAIN1 (ENSSBOG00000027553) #17	EDNRB (ENSSBOG00000034061) #18	POU4F1 (ENSSBOG00000020314) #19	OBI1 (ENSSBOG00000032722) #20	ENSSBOG00000001872	RBM26 (ENSSBOG00000031813) #21	ENSSBOG00000023146	NDFIP2 (ENSSBOG00000026677) #22	ENSSBOG00000023804	SPRY2 (ENSSBOG00000036389) #23	SLITRK1 (ENSSBOG00000009738) #24	ENSSBOG00000025325	SLITRK6 (ENSSBOG00000019761) #25	ENSSBOG00000019639
Mas night monkey	MODERN SPECIES	860											POU4F1 (ENSANAG00000025165) #19	OBI1 (ENSANAG00000028343) #20	ENSANAG00000031946	ENSANAG00000036982	RBM26 (ENSANAG00000033451) #21	ENSANAG00000025982 #22	ENSANAG00000036128	SPRY2 (ENSANAG00000031408) #23	ENSANAG00000022993	ENSANAG00000031451	SLITRK1 (ENSANAG00000005794) #24	ENSANAG00000029901	SLITRK6 (ENSANAG00000031387) #25	SLITRK5 (ENSANAG00000031105) #26
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00390000012721.b.l #22
Cebidae	ANCESTRAL SPECIES																	ENSGT00390000012721.b.l #22
Cebidae_a	ANCESTRAL SPECIES	28	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00900000143501	ENSGT00510000046929.a #21	ENSGT00390000012721.b.l #22	ENSGT00390000012721.b.k #22	ENSGT00390000002200.a.b.d	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24
Capuchin	MODERN SPECIES	660														ENSCCAG00000024824	RBM26 (ENSCCAG00000025299) #21	NDFIP2 (ENSCCAG00000026919) #22
Mas night monkey	MODERN SPECIES	649	AKAP1 (ENSANAG00000032242)	MSI2 (ENSANAG00000037827)	MRPS23 (ENSANAG00000028153)	CUEDC1 (ENSANAG00000029934)	VEZF1 (ENSANAG00000035950)	ENSANAG00000020583	DYNLL2 (ENSANAG00000037487)	MED31 (ENSANAG00000027576)	TXNDC17 (ENSANAG00000033710)	ENSANAG00000037706	KIAA0753 (ENSANAG00000025158)	PITPNM3 (ENSANAG00000029454)	PIMREG (ENSANAG00000009437)	AIPL1 (ENSANAG00000030357)	WSCD1 (ENSANAG00000037707)	ENSANAG00000035878 #22	NLRP1 (ENSANAG00000000698)	ENSANAG00000009039	MIS12 (ENSANAG00000015438)	ENSANAG00000031099	DHX33 (ENSANAG00000037748)	ENSANAG00000032527	RPAIN (ENSANAG00000028660)	NUP88 (ENSANAG00000032703)	RABEP1 (ENSANAG00000028248)	SCIMP (ENSANAG00000033409)	ZNF594 (ENSANAG00000023997)	ZNF232 (ENSANAG00000037004)	ZFP3 (ENSANAG00000019832)	SLC52A1 (ENSANAG00000024730)	ENSANAG00000033130
Tarsier	MODERN SPECIES	4611														RBM26 (ENSTSYG00000000856) #21	ENSTSYG00000031288	NDFIP2 (ENSTSYG00000010561) #22
Strepsirrhini	ANCESTRAL SPECIES	27	ENSGT00940000158486	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Lemuriformes	ANCESTRAL SPECIES	18	ENSGT00940000158486	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Mouse lemur	MODERN SPECIES	4	TBC1D4 (ENSMICG00000006748)	COMMD6 (ENSMICG00000014323)	UCHL3 (ENSMICG00000014333) #7	LMO7 (ENSMICG00000014340) #8	KCTD12 (ENSMICG00000002666) #9	ACOD1 (ENSMICG00000027082) #10	CLN5 (ENSMICG00000036480) #11	FBXL3 (ENSMICG00000002671) #13	MYCBP2 (ENSMICG00000002673) #14	SCEL (ENSMICG00000002703) #16	SLAIN1 (ENSMICG00000002711) #17	EDNRB (ENSMICG00000016941) #18	POU4F1 (ENSMICG00000011538) #19	OBI1 (ENSMICG00000031669) #20	RBM26 (ENSMICG00000010350) #21	NDFIP2 (ENSMICG00000026359) #22	ENSMICG00000038396	SPRY2 (ENSMICG00000008542) #23	SLITRK1 (ENSMICG00000005389) #24	SLITRK5 (ENSMICG00000035892) #26	ENSMICG00000003836	ENSMICG00000047849	GPC5 (ENSMICG00000030886) #27	GPC6 (ENSMICG00000007601) #28	DCT (ENSMICG00000007611) #29	ENSMICG00000027259	TGDS (ENSMICG00000007621) #30	GPR180 (ENSMICG00000007628) #31	SOX21 (ENSMICG00000030929) #32	ABCC4 (ENSMICG00000003364) #33	ENSMICG00000044636
Lemuriformes_a	ANCESTRAL SPECIES	220					ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23
Greater bamboo lemur	MODERN SPECIES	886													EDNRB (ENSPSMG00000010478) #18	OBI1 (ENSPSMG00000010499) #20	RBM26 (ENSPSMG00000010655) #21	NDFIP2 (ENSPSMG00000010785) #22
Coquerels sifaka	MODERN SPECIES	127					ACOD1 (ENSPCOG00000028224) #10	CLN5 (ENSPCOG00000021786) #11	FBXL3 (ENSPCOG00000026757) #13	MYCBP2 (ENSPCOG00000017256) #14	SCEL (ENSPCOG00000021072) #16	SLAIN1 (ENSPCOG00000014177) #17	EDNRB (ENSPCOG00000018722) #18	POU4F1 (ENSPCOG00000024569) #19	OBI1 (ENSPCOG00000016657) #20	RBM26 (ENSPCOG00000017206) #21	ENSPCOG00000022600	NDFIP2 (ENSPCOG00000021814) #22	SPRY2 (ENSPCOG00000026053) #23
Bushbaby	MODERN SPECIES	151	KLF12 (ENSOGAG00000013642)	TBC1D4 (ENSOGAG00000010914)	UCHL3 (ENSOGAG00000017114) #7	LMO7 (ENSOGAG00000017115) #8	KCTD12 (ENSOGAG00000031731) #9	ACOD1 (ENSOGAG00000002044) #10	CLN5 (ENSOGAG00000000248) #11	FBXL3 (ENSOGAG00000000250) #13	MYCBP2 (ENSOGAG00000000251) #14	SCEL (ENSOGAG00000003803) #16	SLAIN1 (ENSOGAG00000003808) #17	EDNRB (ENSOGAG00000009621) #18	OBI1 (ENSOGAG00000007156) #20	RBM26 (ENSOGAG00000009171) #21	ENSOGAG00000033554	NDFIP2 (ENSOGAG00000005350) #22	SPRY2 (ENSOGAG00000003880) #23	SLITRK1 (ENSOGAG00000005750) #24	SLITRK6 (ENSOGAG00000025658) #25	SLITRK5 (ENSOGAG00000031325) #26
Euarchontoglires_A	ANCESTRAL SPECIES	21	ENSGT00940000158486	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Tree shrew	MODERN SPECIES	1935															RBM26 (ENSTBEG00000003854) #21	NDFIP2 (ENSTBEG00000005780) #22
Glires	ANCESTRAL SPECIES	22	ENSGT00940000158486	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Lagomorpha	ANCESTRAL SPECIES	56	ENSGT00940000158486	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26
Rabbit	MODERN SPECIES	19	ENSOCUG00000031329	ENSOCUG00000024077	KCTD12 (ENSOCUG00000024555) #9	ACOD1 (ENSOCUG00000022836) #10	CLN5 (ENSOCUG00000011892) #11	FBXL3 (ENSOCUG00000011896) #13	ENSOCUG00000030837 #14	SCEL (ENSOCUG00000005947) #16	SLAIN1 (ENSOCUG00000010325) #17	EDNRB (ENSOCUG00000017780) #18	ENSOCUG00000031143	POU4F1 (ENSOCUG00000006718) #19	OBI1 (ENSOCUG00000028116) #20	ENSOCUG00000036462	RBM26 (ENSOCUG00000008843) #21	NDFIP2 (ENSOCUG00000013470) #22	ENSOCUG00000016212	SPRY2 (ENSOCUG00000009608) #23	SLITRK1 (ENSOCUG00000013009) #24	ENSOCUG00000032923	ENSOCUG00000022273	SLITRK6 (ENSOCUG00000000670) #25	SLITRK5 (ENSOCUG00000009898) #26	ENSOCUG00000027015	ENSOCUG00000037741	ENSOCUG00000022423	GPC5 (ENSOCUG00000012280) #27	PUDP (ENSOCUG00000022845)	ENSOCUG00000024687	ENSOCUG00000035476	GPC6 (ENSOCUG00000037248) #28
Pika	MODERN SPECIES	8408																NDFIP2 (ENSOPRG00000008779) #22
Rodentia	ANCESTRAL SPECIES	22	ENSGT00940000158486	ENSGT00390000018369	ENSGT00940000154925.d #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Rodentia_B	ANCESTRAL SPECIES	25	ENSGT00940000158486	ENSGT00390000018369	ENSGT00940000154925.d #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Kangaroo rat	MODERN SPECIES	320	Tbc1d4 (ENSDORG00000001614)	ENSDORG00000011048	ENSDORG00000004556 #7	Lmo7 (ENSDORG00000006551) #8	Kctd12 (ENSDORG00000002106) #9	Acod1 (ENSDORG00000028538) #10	Cln5 (ENSDORG00000003960) #11	Fbxl3 (ENSDORG00000024903) #13	Mycbp2 (ENSDORG00000013391) #14	Scel (ENSDORG00000014567) #16	Slain1 (ENSDORG00000014576) #17	Ednrb (ENSDORG00000008982) #18	Pou4f1 (ENSDORG00000012309) #19	Obi1 (ENSDORG00000023149) #20	Rbm26 (ENSDORG00000006232) #21	Ndfip2 (ENSDORG00000005646) #22	Spry2 (ENSDORG00000023380) #23
Myomorpha	ANCESTRAL SPECIES	32	ENSGT00940000158486	ENSGT00390000018369	ENSGT00940000154925.d #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Lesser Egyptian jerboa	MODERN SPECIES	43	Commd6 (ENSJJAG00000023031)	ENSJJAG00000013427 #7	Lmo7 (ENSJJAG00000017007) #8	Kctd12 (ENSJJAG00000002585) #9	Acod1 (ENSJJAG00000018366) #10	Cln5 (ENSJJAG00000021527) #11	Fbxl3 (ENSJJAG00000018852) #13	Mycbp2 (ENSJJAG00000022162) #14	Scel (ENSJJAG00000012152) #16	Slain1 (ENSJJAG00000010146) #17	Ednrb (ENSJJAG00000013624) #18	ENSJJAG00000001253	Pou4f1 (ENSJJAG00000020991) #19	Obi1 (ENSJJAG00000017901) #20	Rbm26 (ENSJJAG00000022458) #21	Ndfip2 (ENSJJAG00000011345) #22	Spry2 (ENSJJAG00000014691) #23	Slitrk1 (ENSJJAG00000001901) #24	ENSJJAG00000022768	Slitrk6 (ENSJJAG00000023403) #25	Slitrk5 (ENSJJAG00000011603) #26	ENSJJAG00000001423	ENSJJAG00000003316	Gpc5 (ENSJJAG00000003419) #27	Gpc6 (ENSJJAG00000015437) #28	Dct (ENSJJAG00000004981) #29	Tgds (ENSJJAG00000003773) #30	Gpr180 (ENSJJAG00000019702) #31	Sox21 (ENSJJAG00000013313) #32	ENSJJAG00000019199	Abcc4 (ENSJJAG00000013152) #33
Muroidea	ANCESTRAL SPECIES	25	ENSGT00940000158486	ENSGT00390000018369	ENSGT00940000154925.d #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	1472			ENSNGAG00000005781	Ckap2 (ENSNGAG00000004577)	ENSNGAG00000001566	Thsd1 (ENSNGAG00000017184)	ENSNGAG00000015189	Slc25a15 (ENSNGAG00000014429)	Mrps31 (ENSNGAG00000014071)	ENSNGAG00000013434 #16	Slain1 (ENSNGAG00000013136) #17	Ednrb (ENSNGAG00000012786) #18	Pou4f1 (ENSNGAG00000011831) #19	Obi1 (ENSNGAG00000011581) #20	Rbm26 (ENSNGAG00000010729) #21	ENSNGAG00000007622 #22	ENSNGAG00000005712	Spry2 (ENSNGAG00000004828) #23	ENSNGAG00000004071	ENSNGAG00000003424	ENSNGAG00000001162	Slitrk1 (ENSNGAG00000017339) #24	ENSNGAG00000000933	Slitrk6 (ENSNGAG00000000644) #25	ENSNGAG00000011657	Slitrk5 (ENSNGAG00000010331) #26	ENSNGAG00000009661
Upper Galilee mountains blind mole rat	MODERN SPECIES	1006												Slc36a4 (ENSNGAG00000006075)	Mtnr1b (ENSNGAG00000011830)	Fat3 (ENSNGAG00000012896)	ENSNGAG00000013101	ENSNGAG00000016763 #22	Chordc1 (ENSNGAG00000017102)	Naalad2 (ENSNGAG00000018464)	Ubtfl1 (ENSNGAG00000013044)
Muroidea_A	ANCESTRAL SPECIES	10	ENSGT00940000158486	ENSGT00390000018369	ENSGT00940000154925.d.d #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Cricetidae	ANCESTRAL SPECIES	15	ENSGT00940000158486	ENSGT00390000018369	ENSGT00940000154925.d.d #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000154294.k.a	ENSGT00940000154461.`c	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862.e #35
Cricetinae	ANCESTRAL SPECIES	18	ENSGT00390000018369	ENSGT00940000154925.d.c.a #7	ENSGT00860000135993	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756.g #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862.e #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Chinese hamster chok1gshd	MODERN SPECIES	3	Lmo7 (ENSCGRG00001014864) #8	ENSCGRG00001013687	Kctd12 (ENSCGRG00001001949) #9	Acod1 (ENSCGRG00001022216) #10	Cln5 (ENSCGRG00001000329) #11	Fbxl3 (ENSCGRG00001013486) #13	Mycbp2 (ENSCGRG00001018070) #14	ENSCGRG00001020272	Scel (ENSCGRG00001021459) #16	Slain1 (ENSCGRG00001014918) #17	Ednrb (ENSCGRG00001000051) #18	ENSCGRG00001002516	Pou4f1 (ENSCGRG00001018351) #19	Obi1 (ENSCGRG00001023032) #20	Rbm26 (ENSCGRG00001018743) #21	Ndfip2 (ENSCGRG00001023296) #22	Spry2 (ENSCGRG00001006571) #23	ENSCGRG00001007508	Trim52 (ENSCGRG00001002565)	Slitrk1 (ENSCGRG00001002013) #24	Slitrk6 (ENSCGRG00001002482) #25	Slitrk5 (ENSCGRG00001006071) #26	ENSCGRG00001000596	ENSCGRG00001014085	Gpc5 (ENSCGRG00001012658) #27	ENSCGRG00001022279	Gpc6 (ENSCGRG00001014308) #28	Dct (ENSCGRG00001019389) #29	Tgds (ENSCGRG00001000527) #30	Gpr180 (ENSCGRG00001013522) #31	Sox21 (ENSCGRG00001001959) #32
Golden Hamster	MODERN SPECIES	638	Tbc1d4 (ENSMAUG00000010469)	Uchl3 (ENSMAUG00000018118) #7	ENSMAUG00000021617	Lmo7 (ENSMAUG00000010682) #8	Kctd12 (ENSMAUG00000008366) #9	Acod1 (ENSMAUG00000020811) #10	Cln5 (ENSMAUG00000010514) #11	Fbxl3 (ENSMAUG00000018861) #13	ENSMAUG00000019434 #14	Scel (ENSMAUG00000011860) #16	Slain1 (ENSMAUG00000007499) #17	Ednrb (ENSMAUG00000014682) #18	Pou4f1 (ENSMAUG00000012541) #19	Obi1 (ENSMAUG00000017917) #20	Rbm26 (ENSMAUG00000017566) #21	Ndfip2 (ENSMAUG00000013764) #22	Spry2 (ENSMAUG00000000469) #23	ENSMAUG00000016408	Slitrk1 (ENSMAUG00000006551) #24	Slitrk6 (ENSMAUG00000013249) #25	Slitrk5 (ENSMAUG00000003037) #26	Renbp (ENSMAUG00000015967)	Ddx18 (ENSMAUG00000015244)	Htr5b (ENSMAUG00000011414)	Ccdc93 (ENSMAUG00000011394)	Insig2 (ENSMAUG00000011633)	En1 (ENSMAUG00000005024)	Marco (ENSMAUG00000001107)	C1ql2 (ENSMAUG00000001451)	Steap3 (ENSMAUG00000012847)	ENSMAUG00000010977
Cricetidae_B	ANCESTRAL SPECIES	11	ENSGT00940000158486	ENSGT00390000018369	ENSGT00940000154925.d.d #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000154294.k.a	ENSGT00940000154461.`c	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862.e #35
Prairie vole	MODERN SPECIES	85	Uchl3 (ENSMOCG00000006170) #7	ENSMOCG00000021202	Lmo7 (ENSMOCG00000015575) #8	Kctd12 (ENSMOCG00000003893) #9	Acod1 (ENSMOCG00000019100) #10	Cln5 (ENSMOCG00000003256) #11	Fbxl3 (ENSMOCG00000010792) #13	Mycbp2 (ENSMOCG00000005187) #14	Scel (ENSMOCG00000007480) #16	Slain1 (ENSMOCG00000008980) #17	ENSMOCG00000003045	Ednrb (ENSMOCG00000001567) #18	Pou4f1 (ENSMOCG00000010670) #19	Obi1 (ENSMOCG00000011940) #20	Rbm26 (ENSMOCG00000019648) #21	Ndfip2 (ENSMOCG00000011647) #22	Spry2 (ENSMOCG00000020005) #23	ENSMOCG00000003564	ENSMOCG00000000370	Akr1c19 (ENSMOCG00000004770)	ENSMOCG00000020074	Akr1c21 (ENSMOCG00000013283)	Akr1e1 (ENSMOCG00000000527)	Klf6 (ENSMOCG00000017319)	Pitrm1 (ENSMOCG00000009414)	Pfkp (ENSMOCG00000000424)	ENSMOCG00000003646	Adarb2 (ENSMOCG00000011797)	ENSMOCG00000004946	Wdr37 (ENSMOCG00000020977)	Idi1 (ENSMOCG00000000774)
Northern American deer mouse	MODERN SPECIES	22	ENSPEMG00000020134	Uchl3 (ENSPEMG00000019863) #7	Lmo7 (ENSPEMG00000020110) #8	ENSPEMG00000025758	Kctd12 (ENSPEMG00000013361) #9	Acod1 (ENSPEMG00000019858) #10	Cln5 (ENSPEMG00000026961) #11	Fbxl3 (ENSPEMG00000015689) #13	Mycbp2 (ENSPEMG00000019916) #14	Scel (ENSPEMG00000020065) #16	Slain1 (ENSPEMG00000019382) #17	Ednrb (ENSPEMG00000019481) #18	Pou4f1 (ENSPEMG00000019992) #19	Obi1 (ENSPEMG00000019512) #20	Rbm26 (ENSPEMG00000019529) #21	Ndfip2 (ENSPEMG00000019657) #22	Spry2 (ENSPEMG00000019411) #23	Trim52 (ENSPEMG00000026753)	Slitrk1 (ENSPEMG00000012529) #24	Slitrk6 (ENSPEMG00000019770) #25	ENSPEMG00000030779	Slitrk5 (ENSPEMG00000025630) #26	Fgf14 (ENSPEMG00000001132)	ENSPEMG00000029244	Itgbl1 (ENSPEMG00000005341)	ENSPEMG00000029599	Nalcn (ENSPEMG00000015151)	Tmtc4 (ENSPEMG00000016034)	ENSPEMG00000028267	ENSPEMG00000028700	Pcca (ENSPEMG00000009083)
Murinae	ANCESTRAL SPECIES	16	ENSGT00940000158486	ENSGT00390000018369	ENSGT00940000154925.d.d #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862.c #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Mus	ANCESTRAL SPECIES	8	ENSGT00390000018369	ENSGT00940000154925.d.d #7	ENSGT00860000135993	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00900000143753	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862.c #35	ENSGT00940000159806 #36
Mus_A	ANCESTRAL SPECIES	12	ENSGT00390000018369	ENSGT00940000154925.d.d #7	ENSGT00860000135993	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00900000143753	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862.c #35	ENSGT00940000159806 #36
Mus_B	ANCESTRAL SPECIES	11	ENSGT00390000018369	ENSGT00940000154925.d.d #7	ENSGT00860000135993	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862.c #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Mouse	MODERN SPECIES	5	Tbc1d4 (ENSMUSG00000033083)	Commd6 (ENSMUSG00000075486)	Uchl3 (ENSMUSG00000022111) #7	Lmo7 (ENSMUSG00000033060) #8	Kctd12 (ENSMUSG00000098557) #9	Acod1 (ENSMUSG00000022126) #10	Cln5 (ENSMUSG00000022125) #11	Fbxl3 (ENSMUSG00000022124) #13	Mycbp2 (ENSMUSG00000033004) #14	Scel (ENSMUSG00000022123) #16	Slain1 (ENSMUSG00000055717) #17	Ednrb (ENSMUSG00000022122) #18	Pou4f1 (ENSMUSG00000048349) #19	Obi1 (ENSMUSG00000022120) #20	Rbm26 (ENSMUSG00000022119) #21	Ndfip2 (ENSMUSG00000053253) #22	Spry2 (ENSMUSG00000022114) #23	Trim52 (ENSMUSG00000022113)	Slitrk1 (ENSMUSG00000075478) #24	Slitrk6 (ENSMUSG00000045871) #25	Slitrk5 (ENSMUSG00000033214) #26	Tpm3-rs7 (ENSMUSG00000058126)	Gpc5 (ENSMUSG00000022112) #27	Gpc6 (ENSMUSG00000058571) #28	Dct (ENSMUSG00000022129) #29	Tgds (ENSMUSG00000022130) #30	Gpr180 (ENSMUSG00000022131) #31	Sox21 (ENSMUSG00000061517) #32	Gm9376 (ENSMUSG00000092109)	Abcc4 (ENSMUSG00000032849) #33	Cldn10 (ENSMUSG00000022132) #34
Mus_C	ANCESTRAL SPECIES	20	ENSGT00390000018369	ENSGT00940000154925.d.d #7	ENSGT00860000135993	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00390000000475.sb.bc.a	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862.c #35	ENSGT00940000159806 #36
Steppe mouse	MODERN SPECIES	2960															Rbm26 (ENSMSIG00000029562) #21	Ndfip2 (ENSMSIG00000029710) #22	ENSMSIG00000029724	Spry2 (ENSMSIG00000029732) #23	ENSMSIG00000029733	Trim52 (ENSMSIG00000029735)
spretus	MODERN SPECIES	5	Commd6 (MGP_SPRETEiJ_G0020462)	MGP_SPRETEiJ_G0020463 #7	MGP_SPRETEiJ_G0020464	Lmo7 (MGP_SPRETEiJ_G0020465) #8	Kctd12 (MGP_SPRETEiJ_G0020466) #9	Acod1 (MGP_SPRETEiJ_G0020467) #10	Cln5 (MGP_SPRETEiJ_G0020468) #11	Fbxl3 (MGP_SPRETEiJ_G0020469) #13	Mycbp2 (MGP_SPRETEiJ_G0020470) #14	Scel (MGP_SPRETEiJ_G0020471) #16	Slain1 (MGP_SPRETEiJ_G0020472) #17	Ednrb (MGP_SPRETEiJ_G0020473) #18	MGP_SPRETEiJ_G0020474 #19	Obi1 (MGP_SPRETEiJ_G0020475) #20	Rbm26 (MGP_SPRETEiJ_G0020476) #21	Ndfip2 (MGP_SPRETEiJ_G0020477) #22	Spry2 (MGP_SPRETEiJ_G0020478) #23	MGP_SPRETEiJ_G0020479	Trim52 (MGP_SPRETEiJ_G0020480)	Slitrk1 (MGP_SPRETEiJ_G0020481) #24	MGP_SPRETEiJ_G0020482	Slitrk6 (MGP_SPRETEiJ_G0020483) #25	Slitrk5 (MGP_SPRETEiJ_G0020484) #26	Gpc5 (MGP_SPRETEiJ_G0020485) #27	Gpc6 (MGP_SPRETEiJ_G0020486) #28	Dct (MGP_SPRETEiJ_G0020487) #29	Tgds (MGP_SPRETEiJ_G0020488) #30	Gpr180 (MGP_SPRETEiJ_G0020489) #31	Sox21 (MGP_SPRETEiJ_G0020490) #32	Abcc4 (MGP_SPRETEiJ_G0020491) #33	Cldn10 (MGP_SPRETEiJ_G0020492) #34
Ryukyu mouse	MODERN SPECIES	5	Commd6 (MGP_CAROLIEiJ_G0019566)	MGP_CAROLIEiJ_G0019567 #7	MGP_CAROLIEiJ_G0019568	Lmo7 (MGP_CAROLIEiJ_G0019569) #8	Kctd12 (MGP_CAROLIEiJ_G0019570) #9	Acod1 (MGP_CAROLIEiJ_G0019571) #10	Cln5 (MGP_CAROLIEiJ_G0019572) #11	Fbxl3 (MGP_CAROLIEiJ_G0019573) #13	Mycbp2 (MGP_CAROLIEiJ_G0019574) #14	Scel (MGP_CAROLIEiJ_G0019575) #16	Slain1 (MGP_CAROLIEiJ_G0019576) #17	Ednrb (MGP_CAROLIEiJ_G0019577) #18	Pou4f1 (MGP_CAROLIEiJ_G0019578) #19	Obi1 (MGP_CAROLIEiJ_G0019579) #20	Rbm26 (MGP_CAROLIEiJ_G0019580) #21	Ndfip2 (MGP_CAROLIEiJ_G0019581) #22	Spry2 (MGP_CAROLIEiJ_G0019582) #23	MGP_CAROLIEiJ_G0019583	Trim52 (MGP_CAROLIEiJ_G0019584)	Slitrk1 (MGP_CAROLIEiJ_G0019585) #24	Slitrk6 (MGP_CAROLIEiJ_G0019586) #25	Slitrk5 (MGP_CAROLIEiJ_G0019587) #26	Gpc5 (MGP_CAROLIEiJ_G0019588) #27	Gpc6 (MGP_CAROLIEiJ_G0019589) #28	Dct (MGP_CAROLIEiJ_G0019590) #29	Tgds (MGP_CAROLIEiJ_G0019591) #30	Gpr180 (MGP_CAROLIEiJ_G0019592) #31	Sox21 (MGP_CAROLIEiJ_G0019593) #32	Abcc4 (MGP_CAROLIEiJ_G0019594) #33	Cldn10 (MGP_CAROLIEiJ_G0019595) #34	Dzip1 (MGP_CAROLIEiJ_G0019596) #35
Shrew mouse	MODERN SPECIES	21	Commd6 (MGP_PahariEiJ_G0030583)	MGP_PahariEiJ_G0030584 #7	MGP_PahariEiJ_G0030585	Lmo7 (MGP_PahariEiJ_G0030586) #8	Kctd12 (MGP_PahariEiJ_G0030587) #9	Acod1 (MGP_PahariEiJ_G0030588) #10	Cln5 (MGP_PahariEiJ_G0030589) #11	Fbxl3 (MGP_PahariEiJ_G0030590) #13	Mycbp2 (MGP_PahariEiJ_G0030591) #14	Scel (MGP_PahariEiJ_G0030592) #16	Slain1 (MGP_PahariEiJ_G0030593) #17	Ednrb (MGP_PahariEiJ_G0030594) #18	Pou4f1 (MGP_PahariEiJ_G0030595) #19	Obi1 (MGP_PahariEiJ_G0030596) #20	Rbm26 (MGP_PahariEiJ_G0030597) #21	Ndfip2 (MGP_PahariEiJ_G0030598) #22	Spry2 (MGP_PahariEiJ_G0030599) #23	MGP_PahariEiJ_G0030600	Trim52 (MGP_PahariEiJ_G0030601)	Slitrk1 (MGP_PahariEiJ_G0030602) #24	Slitrk6 (MGP_PahariEiJ_G0030603) #25	Slitrk5 (MGP_PahariEiJ_G0030604) #26	Gpc5 (MGP_PahariEiJ_G0030605) #27	Gpc6 (MGP_PahariEiJ_G0030606) #28	Dct (MGP_PahariEiJ_G0030607) #29	Tgds (MGP_PahariEiJ_G0030608) #30	Gpr180 (MGP_PahariEiJ_G0030609) #31	Sox21 (MGP_PahariEiJ_G0030610) #32	Abcc4 (MGP_PahariEiJ_G0030611) #33	Cldn10 (MGP_PahariEiJ_G0030612) #34	Dzip1 (MGP_PahariEiJ_G0030613) #35
Rat	MODERN SPECIES	6	Commd6 (ENSRNOG00000038012)	Uchl3 (ENSRNOG00000009530) #7	Lmo7 (ENSRNOG00000060775) #8	Kctd12 (ENSRNOG00000066973) #9	Acod1 (ENSRNOG00000009919) #10	AABR07019209.2 (ENSRNOG00000062279) #11	Fbxl3 (ENSRNOG00000059334) #13	Mycbp2 (ENSRNOG00000010479) #14	Scel (ENSRNOG00000024237) #16	Slain1 (ENSRNOG00000024125) #17	Ednrb (ENSRNOG00000010997) #18	Pou4f1 (ENSRNOG00000060662) #19	Obi1 (ENSRNOG00000009690) #20	ENSRNOG00000065791	Rbm26 (ENSRNOG00000009836) #21	Ndfip2 (ENSRNOG00000024022) #22	Spry2 (ENSRNOG00000010058) #23	Trim52 (ENSRNOG00000024509)	ENSRNOG00000064722	Slitrk1 (ENSRNOG00000009209) #24	Slitrk6 (ENSRNOG00000022337) #25	Slitrk5 (ENSRNOG00000009649) #26	Gpc5 (ENSRNOG00000071105) #27	LOC102548369 (ENSRNOG00000031960)	Gpc6 (ENSRNOG00000046660) #28	Dct (ENSRNOG00000008671) #29	Tgds (ENSRNOG00000009661) #30	Gpr180 (ENSRNOG00000009766) #31	Sox21 (ENSRNOG00000063983) #32	Abcc4 (ENSRNOG00000010064) #33	Cldn10 (ENSRNOG00000010085) #34
Rodentia_A	ANCESTRAL SPECIES	22	ENSGT00940000158486	ENSGT00390000018369	ENSGT00940000154925.d #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Sciuridae	ANCESTRAL SPECIES	34	ENSGT00940000158486	ENSGT00390000018369	ENSGT00940000154925.d #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a.c #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25
Marmotini	ANCESTRAL SPECIES	92	ENSGT00940000158486	ENSGT00390000018369	ENSGT00940000154925.d #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a.c #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25
Marmotini_b	ANCESTRAL SPECIES	159	ENSGT00940000158486	ENSGT00390000018369	ENSGT00940000154925.d #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a.c #23
Arctic ground squirrel	MODERN SPECIES	225													POU4F1 (ENSUPAG00010018297) #19	OBI1 (ENSUPAG00010018284) #20	RBM26 (ENSUPAG00010018218) #21	NDFIP2 (ENSUPAG00010018203) #22	ENSUPAG00010018199 #23
Squirrel	MODERN SPECIES	111	TBC1D4 (ENSSTOG00000005610)	COMMD6 (ENSSTOG00000023782)	UCHL3 (ENSSTOG00000013054) #7	ENSSTOG00000013061 #8	KCTD12 (ENSSTOG00000029073) #9	ACOD1 (ENSSTOG00000023728) #10	CLN5 (ENSSTOG00000028565) #11	FBXL3 (ENSSTOG00000002591) #13	MYCBP2 (ENSSTOG00000010696) #14	SCEL (ENSSTOG00000008526) #16	SLAIN1 (ENSSTOG00000011095) #17	EDNRB (ENSSTOG00000009258) #18	POU4F1 (ENSSTOG00000026743) #19	OBI1 (ENSSTOG00000022458) #20	RBM26 (ENSSTOG00000016031) #21	NDFIP2 (ENSSTOG00000032107) #22	ENSSTOG00000023328 #23
Alpin marmot	MODERN SPECIES	60	ENSMMMG00000008684	LATS2 (ENSMMMG00000008675)	ENSMMMG00000008664	SAP18 (ENSMMMG00000008645)	SKA3 (ENSMMMG00000008632)	MRPL57 (ENSMMMG00000008627)	ZDHHC20 (ENSMMMG00000008578)	MICU2 (ENSMMMG00000008572)	ENSMMMG00000008560	ENSMMMG00000008553	SCEL (ENSMMMG00000008478) #16	SLAIN1 (ENSMMMG00000008454) #17	EDNRB (ENSMMMG00000008410) #18	OBI1 (ENSMMMG00000008378) #20	RBM26 (ENSMMMG00000008268) #21	NDFIP2 (ENSMMMG00000008254) #22	ENSMMMG00000008249 #23	ENSMMMG00000008227	SLITRK1 (ENSMMMG00000008214) #24	SLITRK6 (ENSMMMG00000008207) #25	ENSMMMG00000008192	ENSMMMG00000008184
Eurasian red squirrel	MODERN SPECIES	13	COMMD6 (ENSSVLG00005002122)	ENSSVLG00005002091 #7	LMO7 (ENSSVLG00005001917) #8	KCTD12 (ENSSVLG00005001791) #9	CLN5 (ENSSVLG00005001678) #11	FBXL3 (ENSSVLG00005001661) #13	MYCBP2 (ENSSVLG00005001417) #14	ENSSVLG00005001299	SCEL (ENSSVLG00005001157) #16	ENSSVLG00005000937 #17	EDNRB (ENSSVLG00005000870) #18	POU4F1 (ENSSVLG00005000848) #19	OBI1 (ENSSVLG00005000825) #20	RBM26 (ENSSVLG00005000683) #21	ENSSVLG00005000577	NDFIP2 (ENSSVLG00005000536) #22	ENSSVLG00005000512 #23	ENSSVLG00005000442	SLITRK1 (ENSSVLG00005000428) #24	ENSSVLG00005000392	ENSSVLG00005000367	SLITRK6 (ENSSVLG00005000356) #25	ENSSVLG00005000242	ENSSVLG00005000212	ENSSVLG00005020345	ENSSVLG00005020332	ENSSVLG00005020318	ENSSVLG00005019830	ENSSVLG00005019781	ENSSVLG00005019733	ENSSVLG00005019701
Hystricomorpha	ANCESTRAL SPECIES	25	ENSGT00940000158486	ENSGT00390000018369	ENSGT00940000154925.d #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b.t #37
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	2	ACOD1 (ENSHGLG00000045158) #10	ENSHGLG00000006432	CLN5 (ENSHGLG00000005042) #11	FBXL3 (ENSHGLG00000004245) #13	ENSHGLG00000048947	MYCBP2 (ENSHGLG00000006408) #14	SCEL (ENSHGLG00000010544) #16	ENSHGLG00000037008	SLAIN1 (ENSHGLG00000008516) #17	EDNRB (ENSHGLG00000010112) #18	POU4F1 (ENSHGLG00000007136) #19	OBI1 (ENSHGLG00000006081) #20	ENSHGLG00000003995 #21	ENSHGLG00000045889	ENSHGLG00000033175	ENSHGLG00000008798 #22	ENSHGLG00000046472 #23	ENSHGLG00000035032	ENSHGLG00000020347	ENSHGLG00000045715	ENSHGLG00000034169	ENSHGLG00000039595	SLITRK1 (ENSHGLG00000043563) #24	ENSHGLG00000042637	ENSHGLG00000048999	ENSHGLG00000048637	SLITRK6 (ENSHGLG00000000248) #25	SLITRK5 (ENSHGLG00000048548) #26	ENSHGLG00000037714	ENSHGLG00000039195	ENSHGLG00000020258
Naked mole-rat female	MODERN SPECIES		COQ3 (ENSHGLG00000045065)	ENSHGLG00000000521	ENSHGLG00000042015	FBXL4 (ENSHGLG00000000574)	POU3F2 (ENSHGLG00000019894)	MMS22L (ENSHGLG00000000469)	ENSHGLG00000040999	KLHL32 (ENSHGLG00000000940)	ENSHGLG00000047933	GPR63 (ENSHGLG00000040998)	ENSHGLG00000001482	FHL5 (ENSHGLG00000046172)	ENSHGLG00000019575	FUT9 (ENSHGLG00000043577)	ENSHGLG00000046415	ENSHGLG00000003809 #22	ENSHGLG00000036171	MANEA (ENSHGLG00000000715)	ENSHGLG00000001408	ENSHGLG00000011705	ENSHGLG00000020995	ENSHGLG00000013158	ENSHGLG00000045458	ENSHGLG00000038632	ENSHGLG00000001026	ENSHGLG00000001206	ENSHGLG00000050644	ENSHGLG00000038671	MDN1 (ENSHGLG00000001674)	ENSHGLG00000002586	ENSHGLG00000003248
Hystricomorpha_a	ANCESTRAL SPECIES	21	ENSGT00940000158486	ENSGT00390000018369	ENSGT00940000154925.d #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b.t #37
Hystricomorpha_b	ANCESTRAL SPECIES	44	ENSGT00940000158486	ENSGT00390000018369	ENSGT00940000154925.d #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b.t #37
Degu	MODERN SPECIES	54	LMO7 (ENSODEG00000006234) #8	ENSODEG00000005848	KCTD12 (ENSODEG00000019698) #9	ACOD1 (ENSODEG00000005763) #10	ENSODEG00000019289	CLN5 (ENSODEG00000005265) #11	FBXL3 (ENSODEG00000005779) #13	MYCBP2 (ENSODEG00000005020) #14	ENSODEG00000005930 #16	SLAIN1 (ENSODEG00000005684) #17	EDNRB (ENSODEG00000005525) #18	ENSODEG00000019171	POU4F1 (ENSODEG00000004769) #19	OBI1 (ENSODEG00000005579) #20	RBM26 (ENSODEG00000004663) #21	NDFIP2 (ENSODEG00000005509) #22	SPRY2 (ENSODEG00000005276) #23	ENSODEG00000004945	ENSODEG00000019094	SLITRK1 (ENSODEG00000019121) #24	ENSODEG00000019492	ENSODEG00000007865	SLITRK6 (ENSODEG00000007665) #25	ENSODEG00000019443	ENSODEG00000019180	SLITRK5 (ENSODEG00000019086) #26	ENSODEG00000004500	ENSODEG00000004771 #27	ENSODEG00000004646	GPC6 (ENSODEG00000005614) #28	DCT (ENSODEG00000005228) #29
Long-tailed chinchilla	MODERN SPECIES	111	TBC1D4 (ENSCLAG00000003582)	COMMD6 (ENSCLAG00000003469)	UCHL3 (ENSCLAG00000002780) #7	LMO7 (ENSCLAG00000007971) #8	KCTD12 (ENSCLAG00000018097) #9	ACOD1 (ENSCLAG00000006975) #10	CLN5 (ENSCLAG00000006893) #11	FBXL3 (ENSCLAG00000002524) #13	MYCBP2 (ENSCLAG00000014898) #14	SCEL (ENSCLAG00000002457) #16	SLAIN1 (ENSCLAG00000004290) #17	EDNRB (ENSCLAG00000003613) #18	ENSCLAG00000004015 #19	OBI1 (ENSCLAG00000003803) #20	RBM26 (ENSCLAG00000002467) #21	NDFIP2 (ENSCLAG00000002158) #22	SPRY2 (ENSCLAG00000001939) #23	SLITRK1 (ENSCLAG00000017541) #24	SLITRK6 (ENSCLAG00000006754) #25	SLITRK5 (ENSCLAG00000006000) #26	GPC5 (ENSCLAG00000005754) #27	GPC6 (ENSCLAG00000004267) #28	DCT (ENSCLAG00000003506) #29	TGDS (ENSCLAG00000003039) #30	GPR180 (ENSCLAG00000002976) #31	SOX21 (ENSCLAG00000002844) #32	ABCC4 (ENSCLAG00000002923) #33	CLDN10 (ENSCLAG00000002269) #34	DZIP1 (ENSCLAG00000002611) #35	DNAJC3 (ENSCLAG00000002448) #36	UGGT2 (ENSCLAG00000006413) #37
Guinea pig	MODERN SPECIES	5	KLF5 (ENSCPOG00000001346)	KLF12 (ENSCPOG00000011560)	TBC1D4 (ENSCPOG00000010658)	COMMD6 (ENSCPOG00000021083)	ENSCPOG00000012261 #7	ENSCPOG00000001402 #8	KCTD12 (ENSCPOG00000038709) #9	ACOD1 (ENSCPOG00000036243) #10	CLN5 (ENSCPOG00000033184) #11	FBXL3 (ENSCPOG00000004983) #13	MYCBP2 (ENSCPOG00000003164) #14	SLAIN1 (ENSCPOG00000002630) #17	EDNRB (ENSCPOG00000015463) #18	OBI1 (ENSCPOG00000035300) #20	RBM26 (ENSCPOG00000021081) #21	NDFIP2 (ENSCPOG00000014687) #22	ENSCPOG00000032050	SPRY2 (ENSCPOG00000039286) #23	SLITRK1 (ENSCPOG00000014188) #24	ENSCPOG00000026708	SLITRK5 (ENSCPOG00000034789) #26	ENSCPOG00000000080 #27	GPC6 (ENSCPOG00000001693) #28	DCT (ENSCPOG00000001695) #29	TGDS (ENSCPOG00000001698) #30	GPR180 (ENSCPOG00000001700) #31	ABCC4 (ENSCPOG00000015119) #33	ENSCPOG00000030040	CLDN10 (ENSCPOG00000003817) #34	DZIP1 (ENSCPOG00000003818) #35	DNAJC3 (ENSCPOG00000014938) #36
Laurasiatheria	ANCESTRAL SPECIES	20	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000003706.a.b.b	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00900000143501	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Laurasiatheria_a	ANCESTRAL SPECIES	21	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000003706.a.b.b	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00900000143501	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.a.b ##28	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36
Laurasiatheria_b	ANCESTRAL SPECIES	21	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000003706.a.b.b	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.a.b ##28	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36
Carnivora	ANCESTRAL SPECIES	23	ENSGT00940000158486	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.a.b ##28	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36
Felidae	ANCESTRAL SPECIES	23	ENSGT00940000158486	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT01030000237045	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36
Panthera	ANCESTRAL SPECIES	21	ENSGT00940000158486	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT01030000237045	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000165410.a
Panthera_a	ANCESTRAL SPECIES	23	ENSGT00940000158486	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT01030000237045	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000165410.a
lion	MODERN SPECIES	1	ENSPLOG00000003488	TBC1D4 (ENSPLOG00000003381)	COMMD6 (ENSPLOG00000003290)	UCHL3 (ENSPLOG00000003261) #7	LMO7 (ENSPLOG00000003141) #8	KCTD12 (ENSPLOG00000003060) #9	ACOD1 (ENSPLOG00000003047) #10	CLN5 (ENSPLOG00000003017) #11	FBXL3 (ENSPLOG00000002977) #13	MYCBP2 (ENSPLOG00000002767) #14	SCEL (ENSPLOG00000002509) #16	SLAIN1 (ENSPLOG00000002382) #17	EDNRB (ENSPLOG00000002351) #18	OBI1 (ENSPLOG00000002335) #20	RBM26 (ENSPLOG00000002218) #21	NDFIP2 (ENSPLOG00000002129) #22	ENSPLOG00000002120	ENSPLOG00000002108	SPRY2 (ENSPLOG00000002090) #23	SLITRK1 (ENSPLOG00000002049) #24	SLITRK6 (ENSPLOG00000002027) #25	SLITRK5 (ENSPLOG00000002017) #26	GPC5 (ENSPLOG00000001929) #27	GPC6 (ENSPLOG00000001908) #28	DCT (ENSPLOG00000001883) #29	TGDS (ENSPLOG00000001808) #30	GPR180 (ENSPLOG00000001789) #31	SOX21 (ENSPLOG00000001783) #32	ABCC4 (ENSPLOG00000001751) #33	ENSPLOG00000001697 #34	DZIP1 (ENSPLOG00000001622) #35
leopard	MODERN SPECIES	10	TBC1D4 (ENSPPRG00000012604)	COMMD6 (ENSPPRG00000013199)	UCHL3 (ENSPPRG00000013693) #7	LMO7 (ENSPPRG00000024462) #8	KCTD12 (ENSPPRG00000021754) #9	ACOD1 (ENSPPRG00000023898) #10	CLN5 (ENSPPRG00000023538) #11	FBXL3 (ENSPPRG00000023289) #13	MYCBP2 (ENSPPRG00000009228) #14	SCEL (ENSPPRG00000012578) #16	SLAIN1 (ENSPPRG00000015252) #17	EDNRB (ENSPPRG00000018672) #18	POU4F1 (ENSPPRG00000020226) #19	OBI1 (ENSPPRG00000021495) #20	RBM26 (ENSPPRG00000023669) #21	NDFIP2 (ENSPPRG00000022750) #22	ENSPPRG00000000040	SPRY2 (ENSPPRG00000015080) #23	ENSPPRG00000000214	SLITRK1 (ENSPPRG00000015089) #24	SLITRK6 (ENSPPRG00000015097) #25	SLITRK5 (ENSPPRG00000015111) #26	ENSPPRG00000000835	GPC5 (ENSPPRG00000002229) #27	GPC6 (ENSPPRG00000002331) #28	DCT (ENSPPRG00000003401) #29	TGDS (ENSPPRG00000003730) #30	GPR180 (ENSPPRG00000004249) #31	SOX21 (ENSPPRG00000015272) #32	ABCC4 (ENSPPRG00000006090) #33	CLDN10 (ENSPPRG00000008127) #34
Tiger	MODERN SPECIES	585															RBM26 (ENSPTIG00000000119) #21	NDFIP2 (ENSPTIG00000000854) #22	ENSPTIG00000000935	SPRY2 (ENSPTIG00000008535) #23	SLITRK1 (ENSPTIG00000008546) #24	SLITRK6 (ENSPTIG00000008551) #25	ENSPTIG00000000980 #27	GPC6 (ENSPTIG00000001028) #28	DCT (ENSPTIG00000001115) #29	TGDS (ENSPTIG00000001203) #30	GPR180 (ENSPTIG00000001321) #31	ABCC4 (ENSPTIG00000001430) #33	CLDN10 (ENSPTIG00000002036) #34	DZIP1 (ENSPTIG00000002159) #35	DNAJC3 (ENSPTIG00000002991) #36	ENSPTIG00000008556	UGGT2 (ENSPTIG00000003185) #37
Cat	MODERN SPECIES		TBC1D4 (ENSFCAG00000018543)	COMMD6 (ENSFCAG00000023663)	UCHL3 (ENSFCAG00000027839) #7	LMO7 (ENSFCAG00000008534) #8	KCTD12 (ENSFCAG00000007569) #9	ACOD1 (ENSFCAG00000010436) #10	CLN5 (ENSFCAG00000033598) #11	FBXL3 (ENSFCAG00000027307) #13	MYCBP2 (ENSFCAG00000005053) #14	SCEL (ENSFCAG00000030079) #16	SLAIN1 (ENSFCAG00000003034) #17	EDNRB (ENSFCAG00000023007) #18	POU4F1 (ENSFCAG00000046488) #19	OBI1 (ENSFCAG00000032576) #20	RBM26 (ENSFCAG00000000561) #21	NDFIP2 (ENSFCAG00000025797) #22	ENSFCAG00000024879	ENSFCAG00000046985	SPRY2 (ENSFCAG00000007743) #23	SLITRK1 (ENSFCAG00000002455) #24	SLITRK6 (ENSFCAG00000006736) #25	SLITRK5 (ENSFCAG00000039523) #26	GPC5 (ENSFCAG00000033514) #27	GPC6 (ENSFCAG00000025920) #28	DCT (ENSFCAG00000002994) #29	TGDS (ENSFCAG00000002997) #30	GPR180 (ENSFCAG00000026347) #31	SOX21 (ENSFCAG00000042881) #32	ABCC4 (ENSFCAG00000009172) #33	CLDN10 (ENSFCAG00000034754) #34	DZIP1 (ENSFCAG00000002928) #35
Caniformia	ANCESTRAL SPECIES	24	ENSGT00940000158486	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.a.b ##28	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36
Canidae	ANCESTRAL SPECIES	38	ENSGT00940000158486	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756.j #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00390000017480.g.a	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.a.b ##28	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35
Canis_lupus	ANCESTRAL SPECIES	35	ENSGT00940000158486	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756.j #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00390000017480.g.a	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000153431.a.p	ENSGT00940000158453.a #26	ENSGT00940000153607.c.a.c.a	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.a.b ##28	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33
Dingo	MODERN SPECIES	337	TBC1D4 (ENSCAFG00020025696)	COMMD6 (ENSCAFG00020025693)	UCHL3 (ENSCAFG00020025692) #7	LMO7 (ENSCAFG00020025260) #8	ACOD1 (ENSCAFG00020025125) #10	CLN5 (ENSCAFG00020025118) #11	FBXL3 (ENSCAFG00020025116) #13	MYCBP2 (ENSCAFG00020025063) #14	ENSCAFG00020025057 #16	SLAIN1 (ENSCAFG00020025049) #17	EDNRB (ENSCAFG00020025041) #18	POU4F1 (ENSCAFG00020025036) #19	OBI1 (ENSCAFG00020025031) #20	ENSCAFG00020025025	RBM26 (ENSCAFG00020024152) #21	NDFIP2 (ENSCAFG00020024076) #22	SPRY2 (ENSCAFG00020024071) #23	ENSCAFG00020024068	ENSCAFG00020024063	ENSCAFG00020024059	SLITRK1 (ENSCAFG00020024056) #24	ENSCAFG00020024054	ENSCAFG00020024049	SLITRK6 (ENSCAFG00020024048) #25	ENSCAFG00020024045	ENSCAFG00020024043	ENSCAFG00020024040	ENSCAFG00020024038	SLITRK5 (ENSCAFG00020024036) #26	ENSCAFG00020024030	ENSCAFG00020024028
Dog	MODERN SPECIES	14	COMMD6 (ENSCAFG00845024802)	UCHL3 (ENSCAFG00845024890) #7	LMO7 (ENSCAFG00845025227) #8	ENSCAFG00845025989	KCTD12 (ENSCAFG00845026049) #9	ACOD1 (ENSCAFG00845026079) #10	CLN5 (ENSCAFG00845026181) #11	FBXL3 (ENSCAFG00845026353) #13	MYCBP2 (ENSCAFG00845026439) #14	SCEL (ENSCAFG00845026895) #16	SLAIN1 (ENSCAFG00845027605) #17	EDNRB (ENSCAFG00845027774) #18	POU4F1 (ENSCAFG00845027838) #19	OBI1 (ENSCAFG00845027870) #20	RBM26 (ENSCAFG00845027959) #21	NDFIP2 (ENSCAFG00845028341) #22	SPRY2 (ENSCAFG00845028431) #23	ENSCAFG00845028507	ENSCAFG00845028540	ENSCAFG00845028564	ENSCAFG00845028573	ENSCAFG00845006476	SLITRK1 (ENSCAFG00845006513) #24	ENSCAFG00845006551 #25	ENSCAFG00845006574	ENSCAFG00845006596	ENSCAFG00845006620	SLITRK5 (ENSCAFG00845006790) #26	ENSCAFG00845006931	ENSCAFG00845006956	ENSCAFG00845007169 #27
Red fox	MODERN SPECIES	170										MYCBP2 (ENSVVUG00000010036) #14	SLAIN1 (ENSVVUG00000014122) #17	EDNRB (ENSVVUG00000014127) #18	ENSVVUG00000014174	RNF219 (ENSVVUG00000014179) #20	RBM26 (ENSVVUG00000014196) #21	NDFIP2 (ENSVVUG00000014219) #22	SPRY2 (ENSVVUG00000014233) #23	ENSVVUG00000014246
Caniformia_b	DUPLICATION
Caniformia_b	ANCESTRAL SPECIES																	ENSGT00390000012721.b.e #22
Ursidae	ANCESTRAL SPECIES																	ENSGT00390000012721.b.e #22
Giant Panda	MODERN SPECIES	1827																ENSAMEG00000030813 #22
Caniformia_b	ANCESTRAL SPECIES	26	ENSGT00940000158486	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b.f #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Ursidae	ANCESTRAL SPECIES	27	ENSGT00940000158486	ENSGT00390000018369.d	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b.f #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000159517.n	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b.l #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36
Giant Panda	MODERN SPECIES	17	TBC1D4 (ENSAMEG00000011360)	ENSAMEG00000027012	UCHL3 (ENSAMEG00000011396) #7	LMO7 (ENSAMEG00000011427) #8	KCTD12 (ENSAMEG00000029708) #9	ACOD1 (ENSAMEG00000007954) #10	CLN5 (ENSAMEG00000007959) #11	FBXL3 (ENSAMEG00000007966) #13	MYCBP2 (ENSAMEG00000007975) #14	SCEL (ENSAMEG00000028617) #16	SLAIN1 (ENSAMEG00000005622) #17	EDNRB (ENSAMEG00000005640) #18	POU4F1 (ENSAMEG00000002442) #19	OBI1 (ENSAMEG00000002446) #20	RBM26 (ENSAMEG00000002458) #21	NDFIP2 (ENSAMEG00000002504) #22	SPRY2 (ENSAMEG00000002530) #23	ENSAMEG00000030067	ENSAMEG00000018926	SLITRK1 (ENSAMEG00000018959) #24	SLITRK6 (ENSAMEG00000018771) #25	ENSAMEG00000031163	SLITRK5 (ENSAMEG00000026892) #26	GPC5 (ENSAMEG00000017157) #27	GPC6 (ENSAMEG00000010136) #28	DCT (ENSAMEG00000010142) #29	TGDS (ENSAMEG00000010181) #30	GPR180 (ENSAMEG00000010215) #31	SOX21 (ENSAMEG00000010234) #32	ABCC4 (ENSAMEG00000010239) #33	CLDN10 (ENSAMEG00000010283) #34
Ursus	ANCESTRAL SPECIES	179	ENSGT00940000158108	ENSGT00940000158486	ENSGT00390000018369.d	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b.f #22	ENSGT00950000183055.a.a #23
Polar bear	MODERN SPECIES	137	KLF12 (ENSUMAG00000010197)	TBC1D4 (ENSUMAG00000010280)	COMMD6 (ENSUMAG00000010841)	UCHL3 (ENSUMAG00000010846) #7	LMO7 (ENSUMAG00000010921) #8	ACOD1 (ENSUMAG00000011447) #10	CLN5 (ENSUMAG00000011457) #11	FBXL3 (ENSUMAG00000011470) #13	MYCBP2 (ENSUMAG00000011773) #14	ENSUMAG00000013235 #16	SLAIN1 (ENSUMAG00000013245) #17	EDNRB (ENSUMAG00000013254) #18	POU4F1 (ENSUMAG00000013263) #19	OBI1 (ENSUMAG00000013268) #20	RBM26 (ENSUMAG00000013370) #21	NDFIP2 (ENSUMAG00000014612) #22	SPRY2 (ENSUMAG00000014628) #23	ENSUMAG00000014633	ENSUMAG00000014643	ENSUMAG00000014652	SLITRK1 (ENSUMAG00000014660) #24
Mustelinae	ANCESTRAL SPECIES	158	ENSGT00940000158486	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b.f #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26
American mink	DUPLICATION
American mink	MODERN SPECIES	108															RBM26 (ENSNVIG00000011326) #21	ENSNVIG00000011572 #22	SPY2 (ENSNVIG00000011622) #23	ENSNVIG00000011641	ENSNVIG00000011657	SLIK1 (ENSNVIG00000011672) #24	WAC (ENSNVIG00000011691)	BAMBI (ENSNVIG00000011755)	ENSNVIG00000011773
American mink	MODERN SPECIES	226																ENSNVIG00000017753 #22	DPYSL5 (ENSNVIG00000017674)	ENSNVIG00000017668	MAPRE3 (ENSNVIG00000017594)	TMEM214 (ENSNVIG00000017535)	OST4 (ENSNVIG00000017529)	AGBL5 (ENSNVIG00000017454)	EMILIN1 (ENSNVIG00000017410)	KHK (ENSNVIG00000017367)	CGREF1 (ENSNVIG00000017356)	PREB (ENSNVIG00000017268)	ENSNVIG00000017258	TCF23 (ENSNVIG00000017253)	SLC5A6 (ENSNVIG00000017129)	ATRAID (ENSNVIG00000017116)	CAD (ENSNVIG00000016907)
Ferret	MODERN SPECIES	206	ENSMPUG00000003194	ENSMPUG00000003196	UCHL3 (ENSMPUG00000003202) #7	LMO7 (ENSMPUG00000003206) #8	CLN5 (ENSMPUG00000003217) #11	KCTD12 (ENSMPUG00000018767) #9	ACOD1 (ENSMPUG00000003233) #10	FBXL3 (ENSMPUG00000003237) #13	MYCBP2 (ENSMPUG00000003254) #14	SCEL (ENSMPUG00000003299) #16	SLAIN1 (ENSMPUG00000003320) #17	EDNRB (ENSMPUG00000003329) #18	ENSMPUG00000003335 #19	OBI1 (ENSMPUG00000003343) #20	RBM26 (ENSMPUG00000003347) #21	NDFIP2 (ENSMPUG00000003366) #22	ENSMPUG00000003372	SPRY2 (ENSMPUG00000018769) #23	ENSMPUG00000003386	ENSMPUG00000003393	SLITRK1 (ENSMPUG00000018772) #24	ENSMPUG00000018773	ENSMPUG00000018774	SLITRK6 (ENSMPUG00000018776) #25	ENSMPUG00000018778	ENSMPUG00000018780	ENSMPUG00000003404	ENSMPUG00000018782	SLITRK5 (ENSMPUG00000018784) #26
Laurasiatheria_c	ANCESTRAL SPECIES	22	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000003706.a.b.b	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Equus	ANCESTRAL SPECIES	26	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000003706.a.b.b	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000165227	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00900000143249	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36
Horse	MODERN SPECIES	8	ENSECAG00000052473	ENSECAG00000046558	ENSECAG00000059067	KCTD12 (ENSECAG00000002083) #9	ACOD1 (ENSECAG00000009363) #10	CLN5 (ENSECAG00000010400) #11	FBXL3 (ENSECAG00000011128) #13	MYCBP2 (ENSECAG00000011696) #14	SCEL (ENSECAG00000022594) #16	SLAIN1 (ENSECAG00000023089) #17	EDNRB (ENSECAG00000024851) #18	ENSECAG00000045618	POU4F1 (ENSECAG00000043029) #19	OBI1 (ENSECAG00000011364) #20	RBM26 (ENSECAG00000014547) #21	NDFIP2 (ENSECAG00000023155) #22	SPRY2 (ENSECAG00000002250) #23	ENSECAG00000053924	SLITRK1 (ENSECAG00000002681) #24	ENSECAG00000051912	ENSECAG00000038376	ENSECAG00000046569	ENSECAG00000046745	SLITRK6 (ENSECAG00000013429) #25	SLITRK5 (ENSECAG00000035050) #26	ENSECAG00000015097	ENSECAG00000046134	ENSECAG00000003783 #7	GPC5 (ENSECAG00000019744) #27	GPC6 (ENSECAG00000000234) #28	ENSECAG00000047668
Donkey	MODERN SPECIES	2	COMMD6 (ENSEASG00005031804)	UCHL3 (ENSEASG00005015511) #7	LMO7 (ENSEASG00005015502) #8	KCTD12 (ENSEASG00005038794) #9	ACOD1 (ENSEASG00005026273) #10	CLN5 (ENSEASG00005015485) #11	FBXL3 (ENSEASG00005015484) #13	MYCBP2 (ENSEASG00005013947) #14	SCEL (ENSEASG00005013768) #16	SLAIN1 (ENSEASG00005013727) #17	EDNRB (ENSEASG00005013714) #18	ENSEASG00005013710	POU4F1 (ENSEASG00005013704) #19	OBI1 (ENSEASG00005013701) #20	RBM26 (ENSEASG00005013694) #21	NDFIP2 (ENSEASG00005013692) #22	SPRY2 (ENSEASG00005036785) #23	ENSEASG00005038495	SLITRK1 (ENSEASG00005037576) #24	SLITRK6 (ENSEASG00005013685) #25	SLITRK5 (ENSEASG00005013676) #26	GPC5 (ENSEASG00005013649) #27	GPC6 (ENSEASG00005031606) #28	DCT (ENSEASG00005013629) #29	TGDS (ENSEASG00005013622) #30	GPR180 (ENSEASG00005013616) #31	SOX21 (ENSEASG00005028849) #32	ABCC4 (ENSEASG00005013595) #33	CLDN10 (ENSEASG00005013591) #34	DZIP1 (ENSEASG00005013579) #35	DNAJC3 (ENSEASG00005013568) #36
Chiroptera	ANCESTRAL SPECIES	39	ENSGT00940000158486	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Megabat	MODERN SPECIES	915															RBM26 (ENSPVAG00000011666) #21	NDFIP2 (ENSPVAG00000011676) #22
Microchiroptera	ANCESTRAL SPECIES	40	ENSGT00940000158486	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Greater horseshoe bat	MODERN SPECIES	22	UCHL3 (ENSRFEG00010002344) #7	ENSRFEG00010002385	LMO7 (ENSRFEG00010002461) #8	ENSRFEG00010002569	KCTD12 (ENSRFEG00010002583) #9	ACOD1 (ENSRFEG00010002598) #10	CLN5 (ENSRFEG00010002623) #11	FBXL3 (ENSRFEG00010002664) #13	MYCBP2 (ENSRFEG00010003134) #14	SCEL (ENSRFEG00010004000) #16	SLAIN1 (ENSRFEG00010004171) #17	EDNRB (ENSRFEG00010004227) #18	POU4F1 (ENSRFEG00010004264) #19	OBI1 (ENSRFEG00010004279) #20	RBM26 (ENSRFEG00010004360) #21	NDFIP2 (ENSRFEG00010004534) #22	SPRY2 (ENSRFEG00010004554) #23	ENSRFEG00010004556	SLITRK1 (ENSRFEG00010004570) #24	ENSRFEG00010004584	SLITRK6 (ENSRFEG00010004592) #25	SLITRK5 (ENSRFEG00010004596) #26	GPC5 (ENSRFEG00010004648) #27	ENSRFEG00010004660	ENSRFEG00010004668	GPC6 (ENSRFEG00010004685) #28	ENSRFEG00010004699	DCT (ENSRFEG00010004716) #29	TGDS (ENSRFEG00010004735) #30	GPR180 (ENSRFEG00010004750) #31	SOX21 (ENSRFEG00010004770) #32
Microbat	MODERN SPECIES	961	LMO7 (ENSMLUG00000003447) #8	KCTD12 (ENSMLUG00000029737) #9	ACOD1 (ENSMLUG00000006910) #10	CLN5 (ENSMLUG00000006926) #11	FBXL3 (ENSMLUG00000006937) #13	MYCBP2 (ENSMLUG00000006495) #14	SCEL (ENSMLUG00000010881) #16	SLAIN1 (ENSMLUG00000010936) #17	ENSMLUG00000022849	EDNRB (ENSMLUG00000005518) #18	ENSMLUG00000025959	ENSMLUG00000002131 #19	OBI1 (ENSMLUG00000002138) #20	ENSMLUG00000030174	RBM26 (ENSMLUG00000003386) #21	NDFIP2 (ENSMLUG00000010833) #22	ENSMLUG00000010005	ENSMLUG00000026427	ENSMLUG00000022527	SLITRK1 (ENSMLUG00000001213) #24	ENSMLUG00000029544	ENSMLUG00000022880	SLITRK6 (ENSMLUG00000007535) #25	ENSMLUG00000023780	ENSMLUG00000022649	ENSMLUG00000000939
Artiodactyla	ANCESTRAL SPECIES	21	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00900000143501	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.a.b ##28	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.a.a ##33	ENSGT00940000153931.a.b.a.b.a.b.b.b ##33	ENSGT00940000155232 #34	ENSGT00940000156862 #35
Suina	ANCESTRAL SPECIES	29	ENSGT00940000158486	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A.l #31	ENSGT00940000162795 #32	ENSGT00940000153931.a.a ##33	ENSGT00940000153931.a.b.a.b.a.a ##33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36
Pig	MODERN SPECIES	2	LMO7 (ENSSSCG00000040184) #8	ENSSSCG00000055141	ENSSSCG00000045335	KCTD12 (ENSSSCG00000059342) #9	ACOD1 (ENSSSCG00000009469) #10	CLN5 (ENSSSCG00000031288) #11	FBXL3 (ENSSSCG00000009472) #13	MYCBP2 (ENSSSCG00000009473) #14	SCEL (ENSSSCG00000009474) #16	SLAIN1 (ENSSSCG00000009475) #17	EDNRB (ENSSSCG00000009477) #18	ENSSSCG00000043223	POU4F1 (ENSSSCG00000025334) #19	OBI1 (ENSSSCG00000029113) #20	RBM26 (ENSSSCG00000009479) #21	NDFIP2 (ENSSSCG00000009480) #22	SPRY2 (ENSSSCG00000009482) #23	ENSSSCG00000050522	ENSSSCG00000004054	ENSSSCG00000047723	SLITRK1 (ENSSSCG00000009485) #24	ENSSSCG00000035248	SLITRK6 (ENSSSCG00000009486) #25	ENSSSCG00000033995	ENSSSCG00000047038	SLITRK5 (ENSSSCG00000009488) #26	GPC5 (ENSSSCG00000031946) #27	GPC6 (ENSSSCG00000009489) #28	DCT (ENSSSCG00000009490) #29	TGDS (ENSSSCG00000009491) #30	GPR180 (ENSSSCG00000009492) #31
Chacoan peccary	MODERN SPECIES	976	COMMD6 (ENSCWAG00000021024)	UCHL3 (ENSCWAG00000021030) #7	LMO7 (ENSCWAG00000021053) #8	ENSCWAG00000011833	KCTD12 (ENSCWAG00000011852) #9	CLN5 (ENSCWAG00000012026) #11	FBXL3 (ENSCWAG00000012121) #13	MYCBP2 (ENSCWAG00000012264) #14	SCEL (ENSCWAG00000014310) #16	SLAIN1 (ENSCWAG00000015194) #17	EDNRB (ENSCWAG00000015335) #18	POU4F1 (ENSCWAG00000015446) #19	OBI1 (ENSCWAG00000015472) #20	ENSCWAG00000015505	RBM26 (ENSCWAG00000015536) #21	NDFIP2 (ENSCWAG00000015649) #22	SPRY2 (ENSCWAG00000015717) #23	SLITRK1 (ENSCWAG00000015735) #24	SLITRK6 (ENSCWAG00000015756) #25	SLITRK5 (ENSCWAG00000015768) #26
Artiodactyla_a	ANCESTRAL SPECIES	22	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00900000143501	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.a.b ##28	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.a.a ##33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36
Camelidae	ANCESTRAL SPECIES	14	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00900000143501	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.a.a ##33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Alpaca	MODERN SPECIES	737															RBM26 (ENSVPAG00000009821) #21	NDFIP2 (ENSVPAG00000009823) #22
Arabian camel	MODERN SPECIES	5	UCHL3 (ENSCDRG00005004566) #7	LMO7 (ENSCDRG00005004621) #8	ENSCDRG00005005107	KCTD12 (ENSCDRG00005005134) #9	ACOD1 (ENSCDRG00005005145) #10	CLN5 (ENSCDRG00005005164) #11	FBXL3 (ENSCDRG00005005212) #13	MYCBP2 (ENSCDRG00005005390) #14	SCEL (ENSCDRG00005008776) #16	SLAIN1 (ENSCDRG00005009543) #17	EDNRB (ENSCDRG00005009727) #18	POU4F1 (ENSCDRG00005009798) #19	OBI1 (ENSCDRG00005009888) #20	RBM26 (ENSCDRG00005010061) #21	ENSCDRG00005012182	NDFIP2 (ENSCDRG00005012213) #22	ENSCDRG00005012356	SPRY2 (ENSCDRG00005012396) #23	ENSCDRG00005012448	SLITRK1 (ENSCDRG00005012480) #24	SLITRK6 (ENSCDRG00005012494) #25	SLITRK5 (ENSCDRG00005012509) #26	GPC5 (ENSCDRG00005012621) #27	ENSCDRG00005012705 #28	ENSCDRG00005012719 #28	DCT (ENSCDRG00005012774) #29	GPR180 (ENSCDRG00005013094) #31	SOX21 (ENSCDRG00005013161) #32	ABCC4 (ENSCDRG00005013232) ##33	CLDN10 (ENSCDRG00005014632) #34	DZIP1 (ENSCDRG00005014697) #35
Artiodactyla_b	ANCESTRAL SPECIES	22	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00900000143501	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.a.b ##28	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.a.a ##33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36
Pecora	ANCESTRAL SPECIES	23	ENSGT00390000018369	ENSGT00940000154925.j #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00900000143501	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.a.b ##28	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.a.a ##33	ENSGT00940000153931.a.b.a.b.a.b.b.b.b ##33	ENSGT00940000155232 #34	ENSGT00940000156862 #35
Percora_a	ANCESTRAL SPECIES	25	ENSGT00390000018369	ENSGT00940000154925.j #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00900000143501	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00390000009902.o	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.a.b ##28	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.a.a ##33	ENSGT00940000153931.a.b.a.a.b.a ##33	ENSGT00940000153931.a.b.a.b.a.b.b.b.b ##33
Bovidae	ANCESTRAL SPECIES	25	ENSGT00940000158486	ENSGT00390000018369	ENSGT00940000154925.j #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00390000009902.o	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.a.b ##28	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.a.a ##33	ENSGT00940000153931.a.b.a.a.b.a.b ##33	ENSGT00940000153931.a.b.a.a.a.a ##33
Bovinae	ANCESTRAL SPECIES	29	ENSGT00940000158486	ENSGT00390000018369	ENSGT00940000154925.j #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00950000183183.b.b.n	ENSGT00950000183375	ENSGT00940000153362.a.cb.a.b	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00390000009902.o	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.a.b ##28	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000155186.t.d	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31
Bos	ANCESTRAL SPECIES	28	ENSGT00390000018369	ENSGT00940000154925.j #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000003420.a.b.v.a	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00950000183183.b.b.n	ENSGT00950000183375	ENSGT00940000153362.a.cb.a.b.b	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00390000009902.o	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.a.b ##28	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000155186.t.d	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31
Bos_a	ANCESTRAL SPECIES	19	ENSGT00940000154925.j #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000003420.a.b.v.a	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00990000212850	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00950000183183.b.b.n	ENSGT00950000183375	ENSGT01100000263503.E.d.a.a.b.b.k.a	ENSGT00730000111351	ENSGT00390000017146.b	ENSGT00950000182950.B	ENSGT01000000214889	ENSGT00940000157953	ENSGT00390000016480	ENSGT00940000161271	ENSGT00940000160889	ENSGT00940000159927	ENSGT01030000234579.B.b	ENSGT00940000154652
Domestic yak	MODERN SPECIES	6	ENSBGRG00000003875	ENSBGRG00000003855	KCTD12 (ENSBGRG00000003834) #9	ACOD1 (ENSBGRG00000003776) #10	CLN5 (ENSBGRG00000021575) #11	FBXL3 (ENSBGRG00000021547) #13	ENSBGRG00000021531 #14	ENSBGRG00000021495	SCEL (ENSBGRG00000020490) #16	SLAIN1 (ENSBGRG00000020350) #17	EDNRB (ENSBGRG00000020314) #18	POU4F1 (ENSBGRG00000020242) #19	ENSBGRG00000020223	OBI1 (ENSBGRG00000020123) #20	RBM26 (ENSBGRG00000019863) #21	NDFIP2 (ENSBGRG00000019693) #22	SPRY2 (ENSBGRG00000019613) #23	ENSBGRG00000019588	ENSBGRG00000019537	ENSBGRG00000019514	CHAMP1 (ENSBGRG00000019502)	UPF3A (ENSBGRG00000019190)	CDC16 (ENSBGRG00000018425)	ENSBGRG00000018383	RASA3 (ENSBGRG00000017995)	ENSBGRG00000017918	GAS6 (ENSBGRG00000017756)	TMEM255B (ENSBGRG00000017560)	GRK1 (ENSBGRG00000017415)	ATP4B (ENSBGRG00000017325)	TFDP1 (ENSBGRG00000017078)
Wild yak	MODERN SPECIES	1949															RBM26 (ENSBMUG00000008506) #21	NDFIP2 (ENSBMUG00000008739) #22	ENSBMUG00000008745
Bos_b	ANCESTRAL SPECIES	33	ENSGT00950000183159.b #8	ENSGT01100000263481.n.a.b.a.a.a.a.a.b.a.a.a.b.a	ENSGT00390000018141.i.a.a.a.a.b.a.a	ENSGT00940000161074.a #9	ENSGT00390000003420.a.b.v.a	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00950000183183.b.b.n	ENSGT00950000183375	ENSGT00940000153362.a.cb.a.b.b	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00390000009902.o	ENSGT00940000158453.a #26	ENSGT00940000157437.cb	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.a.b ##28	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000155186.t.d	ENSGT00940000156856 #29	ENSGT00940000159196 #30
Cow	MODERN SPECIES	3	UCHL3 (ENSBTAG00000008024) #7	LMO7 (ENSBTAG00000010693) #8	ENSBTAG00000032878	KCTD12 (ENSBTAG00000001414) #9	ENSBTAG00000054283	ACOD1 (ENSBTAG00000008259) #10	CLN5 (ENSBTAG00000018846) #11	FBXL3 (ENSBTAG00000018848)	MYCBP2 (ENSBTAG00000018851) #14	SCEL (ENSBTAG00000032821) #16	SLAIN1 (ENSBTAG00000003511) #17	EDNRB (ENSBTAG00000005299) #18	POU4F1 (ENSBTAG00000051184) #19	OBI1 (ENSBTAG00000000869) #20	RBM26 (ENSBTAG00000017573) #21	NDFIP2 (ENSBTAG00000014227) #22	SPRY2 (ENSBTAG00000001774) #23	ENSBTAG00000020684	SLITRK1 (ENSBTAG00000038168) #24	SLITRK6 (ENSBTAG00000004388) #25	HTATSF1 (ENSBTAG00000032711)	SLITRK5 (ENSBTAG00000010129) #26	ENSBTAG00000051320	GPC5 (ENSBTAG00000008708) #27	GPC6 (ENSBTAG00000040347) ##28	ENSBTAG00000054671 #28	ENSBTAG00000051263	DCT (ENSBTAG00000002300) #29	ENSBTAG00000051519	TGDS (ENSBTAG00000005309) #30	GPR180 (ENSBTAG00000005310) #31
Hybrid Bos Indicus	MODERN SPECIES	3	LMO7 (ENSBIXG00005030418) #8	ENSBIXG00005030583	ENSBIXG00005030605	KCTD12 (ENSBIXG00005030613) #9	ENSBIXG00005030621	ACOD1 (ENSBIXG00005030632) #10	CLN5 (ENSBIXG00005030640) #11	FBXL3 (ENSBIXG00005030647) #13	MYCBP2 (ENSBIXG00005030675) #14	SCEL (ENSBIXG00005030770) #16	SLAIN1 (ENSBIXG00005030824) #17	EDNRB (ENSBIXG00005030835) #18	POU4F1 (ENSBIXG00005030848) #19	OBI1 (ENSBIXG00005030850) #20	RBM26 (ENSBIXG00005030874) #21	NDFIP2 (ENSBIXG00005030900) #22	SPRY2 (ENSBIXG00005030925) #23	ENSBIXG00005030943	ENSBIXG00005030951	ENSBIXG00005030959	SLITRK1 (ENSBIXG00005030962) #24	ENSBIXG00005030973	SLITRK6 (ENSBIXG00005029231) #25	ENSBIXG00005001608	SLITRK5 (ENSBIXG00005001645) #26	ENSBIXG00005029197	GPC5 (ENSBIXG00005001799) #27	GPC6 (ENSBIXG00005001836) #28	ENSBIXG00005005175	ENSBIXG00005005171	DCT (ENSBIXG00005029117) #29
American bison	MODERN SPECIES	3268						ENSBBBG00000013910 #9	ACOD1 (ENSBBBG00000003022) #10	CLN5 (ENSBBBG00000003026) #11	FBXL3 (ENSBBBG00000003030) #13	MYCBP2 (ENSBBBG00000014029) #14	SCEL (ENSBBBG00000014157) #16	SLAIN1 (ENSBBBG00000014178) #17	EDNRB (ENSBBBG00000014192) #18	OBI1 (ENSBBBG00000003218) #20	RBM26 (ENSBBBG00000014297) #21	NDFIP2 (ENSBBBG00000003255) #22	SPRY2 (ENSBBBG00000014320) #23	ENSBBBG00000014338	ENSBBBG00000003271
Caprinae	ANCESTRAL SPECIES	28	ENSGT00940000158486	ENSGT00390000018369	ENSGT00940000154925.i.b #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00390000015489.g.b.a	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000155186.t	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.a.a ##33	ENSGT00940000153931.a.b.a.a.a.a.b ##33	ENSGT00940000153931.a.b.a.b.a.b.b.a.a.a.b.a.a.a ##33
Goat	MODERN SPECIES	3	UCHL3 (ENSCHIG00000018162) #7	LMO7 (ENSCHIG00000005312) #8	ENSCHIG00000011408 ##33	ENSCHIG00000013067 ##33	KCTD12 (ENSCHIG00000012250) #9	ACOD1 (ENSCHIG00000015257) #10	CLN5 (ENSCHIG00000024409) #11	FBXL3 (ENSCHIG00000012392) #13	MYCBP2 (ENSCHIG00000013378) #14	SCEL (ENSCHIG00000020069) #16	SLAIN1 (ENSCHIG00000014735) #17	EDNRB (ENSCHIG00000011534) #18	POU4F1 (ENSCHIG00000003619) #19	OBI1 (ENSCHIG00000013483) #20	RBM26 (ENSCHIG00000021849) #21	NDFIP2 (ENSCHIG00000013007) #22	SPRY2 (ENSCHIG00000008359) #23	SLITRK1 (ENSCHIG00000008324) #24	ENSCHIG00000019136	SLITRK6 (ENSCHIG00000011218) #25	SLITRK5 (ENSCHIG00000001775) #26	ENSCHIG00000005789	GPC5 (ENSCHIG00000012100) #27	ENSCHIG00000016377	ENSCHIG00000011884	ENSCHIG00000021900 #28	ENSCHIG00000019275	DCT (ENSCHIG00000008373) #29	TGDS (ENSCHIG00000024188) #30	GPR180 (ENSCHIG00000016880) #31	SOX21 (ENSCHIG00000019582) #32
Rambouillet Sheep	MODERN SPECIES	1	KLF12 (ENSOARG00020009274)	ENSOARG00020009322	TBC1D4 (ENSOARG00020009407)	ENSOARG00020010475 #7	LMO7 (ENSOARG00020010566) #8	KCTD12 (ENSOARG00020011391) #9	ACOD1 (ENSOARG00020011449) #10	FBXL3 (ENSOARG00020011642) #13	MYCBP2 (ENSOARG00020011819) #14	SCEL (ENSOARG00020013398) #16	SLAIN1 (ENSOARG00020015048) #17	EDNRB (ENSOARG00020015802) #18	POU4F1 (ENSOARG00020015922) #19	OBI1 (ENSOARG00020015941) #20	RBM26 (ENSOARG00020016077) #21	NDFIP2 (ENSOARG00020018757) #22	SPRY2 (ENSOARG00020018823) #23	SLITRK1 (ENSOARG00020003079) #24	ENSOARG00020003130 ##33	ENSOARG00020003191	ENSOARG00020003266	SLITRK6 (ENSOARG00020003278) #25	ENSOARG00020003340	ENSOARG00020003363	ENSOARG00020003396	ENSOARG00020003415	ENSOARG00020003428	ENSOARG00020003440	SLITRK5 (ENSOARG00020003517) #26	ENSOARG00020003564	GPC5 (ENSOARG00020003688) #27
Siberian musk deer	MODERN SPECIES	20								SCEL (ENSMMSG00000002213) #16	SLAIN1 (ENSMMSG00000002744) #17	EDNRB (ENSMMSG00000002801) #18	POU4F1 (ENSMMSG00000002815) #19	OBI1 (ENSMMSG00000002834) #20	ENSMMSG00000002853	ENSMMSG00000002865	RBM26 (ENSMMSG00000002924) #21	NDFIP2 (ENSMMSG00000003411) #22	SPRY2 (ENSMMSG00000003429) #23	SLITRK1 (ENSMMSG00000003435) #24	SLITRK6 (ENSMMSG00000003439) #25	ENSMMSG00000003445	SLITRK5 (ENSMMSG00000003450) #26	ENSMMSG00000003455	GPC5 (ENSMMSG00000003472) #27	ENSMMSG00000003489	GPC6 (ENSMMSG00000003501) #28	DCT (ENSMMSG00000003522) #29	ENSMMSG00000003536	TGDS (ENSMMSG00000003554) #30	GPR180 (ENSMMSG00000003571) #31	SOX21 (ENSMMSG00000003591) #32	ENSMMSG00000003636 ##33
Yarkand deer	MODERN SPECIES	23	LMO7 (ENSCHYG00000017646) #8	ENSCHYG00000019739	ENSCHYG00000019760 #9	ACOD1 (ENSCHYG00000019835) #10	CLN5 (ENSCHYG00000019916) #11	FBXL3 (ENSCHYG00000019966) #13	MYCBP2 (ENSCHYG00000020048) #14	ENSCHYG00000021414	ENSCHYG00000021433	SCEL (ENSCHYG00000021583) #16	SLAIN1 (ENSCHYG00000022943) #17	EDNRB (ENSCHYG00000023112) #18	POU4F1 (ENSCHYG00000023151) #19	OBI1 (ENSCHYG00000023177) #20	RBM26 (ENSCHYG00000023327) #21	NDFIP2 (ENSCHYG00000024389) #22	ENSCHYG00000024442	SPRY2 (ENSCHYG00000024463) #23	SLITRK1 (ENSCHYG00000024473) #24	ENSCHYG00000024483	SLITRK6 (ENSCHYG00000024524) #25	SLITRK5 (ENSCHYG00000024536) #26	ENSCHYG00000024547	GPC5 (ENSCHYG00000024592) #27	GPC6 (ENSCHYG00000024616) #28	ENSCHYG00000024680	ENSCHYG00000024691	DCT (ENSCHYG00000024705) #29	TGDS (ENSCHYG00000024740) #30	GPR180 (ENSCHYG00000024811) #31	SOX21 (ENSCHYG00000024893) #32
Cetacea	ANCESTRAL SPECIES	20	ENSGT00390000018369	ENSGT00940000154925.g #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00940000171241.b	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT01000000220849	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.a.a ##33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36
Odontoceti	ANCESTRAL SPECIES	21	ENSGT00390000018369	ENSGT00940000154925.g #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00940000171241.b	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT01000000220849	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.a.a ##33	ENSGT00390000016769.l.b	ENSGT00940000155232 #34	ENSGT00940000156862 #35
Sperm whale	MODERN SPECIES	4	ENSPCTG00005009672	KCTD12 (ENSPCTG00005009703) #9	ACOD1 (ENSPCTG00005009721) #10	CLN5 (ENSPCTG00005009824) #11	FBXL3 (ENSPCTG00005009923) #13	MYCBP2 (ENSPCTG00005010000) #14	ENSPCTG00005011406	SCEL (ENSPCTG00005011562) #16	SLAIN1 (ENSPCTG00005012618) #17	EDNRB (ENSPCTG00005012800) #18	ENSPCTG00005012835	POU4F1 (ENSPCTG00005012843) #19	RNF219 (ENSPCTG00005012887) #20	ENSPCTG00005012934	RBM26 (ENSPCTG00005013050) #21	NDFIP2 (ENSPCTG00005014065) #22	ENSPCTG00005014186	SPRY2 (ENSPCTG00005014222) #23	ENSPCTG00005014248	ENSPCTG00005014274	ENSPCTG00005014321	SLITRK1 (ENSPCTG00005008752) #24	ENSPCTG00005008804	SLITRK6 (ENSPCTG00005008841) #25	SLITRK5 (ENSPCTG00005008856) #26	ENSPCTG00005008886	ENSPCTG00005008905	GPC5 (ENSPCTG00005009013) #27	GPC6 (ENSPCTG00005009153) #28	DCT (ENSPCTG00005009298) #29	TGDS (ENSPCTG00005009348) #30
Odontoceti_a	ANCESTRAL SPECIES	30	ENSGT00390000018369	ENSGT00940000154925.g #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00940000171241.b	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT01000000220849	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.a.a ##33	ENSGT00390000016769.l.b	ENSGT00940000155232 #34	ENSGT00940000156862 #35
Odontoceti_b	ANCESTRAL SPECIES	21	ENSGT00390000018369	ENSGT00940000154925.g #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00940000171241.b	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT01000000220849	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.a.a ##33	ENSGT00390000016769.l.b	ENSGT00940000155232 #34	ENSGT00940000156862 #35
Monodontidae	ANCESTRAL SPECIES	15	ENSGT00940000154925.g #7	ENSGT00950000183159.b #8	ENSGT00890000139406.a.e.a	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00940000171241.b	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT01000000220849	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00390000016769.l.b	ENSGT00940000153931.a.a ##33	ENSGT00940000155232 #34	ENSGT00940000156862 #35
Narwhal	MODERN SPECIES	315	LMO7 (ENSMMNG00015018041) #8	ENSMMNG00015017817	KCTD12 (ENSMMNG00015017797) #9	ACOD1 (ENSMMNG00015017722) #10	CLN5 (ENSMMNG00015017691) #11	FBXL3 (ENSMMNG00015017674) #13	ENSMMNG00015017650	MYCBP2 (ENSMMNG00015016992) #14	SCEL (ENSMMNG00015016842) #16	SLAIN1 (ENSMMNG00015016641) #17	EDNRB (ENSMMNG00015016604) #18	ENSMMNG00015016576	POU4F1 (ENSMMNG00015016558) #19	OBI1 (ENSMMNG00015016531) #20	RBM26 (ENSMMNG00015016282) #21	NDFIP2 (ENSMMNG00015016173) #22	ENSMMNG00015016120	SPRY2 (ENSMMNG00015016096) #23	SLITRK6 (ENSMMNG00015015967) #25	SLITRK5 (ENSMMNG00015015951) #26	GPC5 (ENSMMNG00015021768) #27	ENSMMNG00015021754 #28	DCT (ENSMMNG00015021746) #29	TGDS (ENSMMNG00015021729) #30	GPR180 (ENSMMNG00015021707) #31	SOX21 (ENSMMNG00015021697) #32	ENSMMNG00015021695	ABCC4 (ENSMMNG00015021669) ##33	CLDN10 (ENSMMNG00015021628) #34	DZIP1 (ENSMMNG00015021612) #35	DNAJC3 (ENSMMNG00015021584) #36
Beluga whale	MODERN SPECIES	31	ENSDLEG00000011694 #7	LMO7 (ENSDLEG00000011610) #8	ENSDLEG00000011583	ENSDLEG00000011579	ENSDLEG00000011570 #9	CLN5 (ENSDLEG00000011542) #11	FBXL3 (ENSDLEG00000011515) #13	ENSDLEG00000011497	MYCBP2 (ENSDLEG00000006276) #14	SCEL (ENSDLEG00000005850) #16	SLAIN1 (ENSDLEG00000005784) #17	EDNRB (ENSDLEG00000005777) #18	POU4F1 (ENSDLEG00000005771) #19	RNF219 (ENSDLEG00000005757) #20	RBM26 (ENSDLEG00000005684) #21	NDFIP2 (ENSDLEG00000005664) #22	ENSDLEG00000005655	SPRY2 (ENSDLEG00000005653) #23	ENSDLEG00000005639	SLITRK1 (ENSDLEG00000005635) #24	SLITRK6 (ENSDLEG00000005623) #25	ENSDLEG00000005621	SLITRK5 (ENSDLEG00000005616) #26	ENSDLEG00000005613	GPC5 (ENSDLEG00000005577) #27	ENSDLEG00000005562 #28	DCT (ENSDLEG00000005549) #29	TGDS (ENSDLEG00000005526) #30	GPR180 (ENSDLEG00000005503) #31	SOX21 (ENSDLEG00000020317) #32	ENSDLEG00000020316
Vaquita	MODERN SPECIES	9	KCTD12 (ENSPSNG00000015501) #9	ACOD1 (ENSPSNG00000015547) #10	CLN5 (ENSPSNG00000015682) #11	FBXL3 (ENSPSNG00000015814) #13	MYCBP2 (ENSPSNG00000015938) #14	ENSPSNG00000017556	SCEL (ENSPSNG00000017634) #16	SLAIN1 (ENSPSNG00000017838) #17	EDNRB (ENSPSNG00000018047) #18	ENSPSNG00000018099	ENSPSNG00000018125	POU4F1 (ENSPSNG00000018142) #19	OBI1 (ENSPSNG00000018170) #20	ENSPSNG00000018218	RBM26 (ENSPSNG00000018306) #21	NDFIP2 (ENSPSNG00000019119) #22	ENSPSNG00000019198	SPRY2 (ENSPSNG00000019215) #23	ENSPSNG00000019233	SLITRK1 (ENSPSNG00000019313) #24	SLITRK6 (ENSPSNG00000019347) #25	SLITRK5 (ENSPSNG00000019380) #26	GPC5 (ENSPSNG00000019453) #27	GPC6 (ENSPSNG00000019532) #28	ENSPSNG00000019595	DCT (ENSPSNG00000019619) #29	TGDS (ENSPSNG00000019711) #30	GPR180 (ENSPSNG00000019753) #31	SOX21 (ENSPSNG00000019784) #32	ABCC4 (ENSPSNG00000019810) ##33	ENSPSNG00000019909
Dolphin	MODERN SPECIES	640															RBM26 (ENSTTRG00000013800) #21	NDFIP2 (ENSTTRG00000013801) #22
Blue whale	MODERN SPECIES	9	ENSBMSG00010017635 #7	LMO7 (ENSBMSG00010017756) #8	KCTD12 (ENSBMSG00010017947) #9	ACOD1 (ENSBMSG00010017966) #10	CLN5 (ENSBMSG00010018004) #11	FBXL3 (ENSBMSG00010018021) #13	ENSBMSG00010018045 #14	ENSBMSG00010018068	SCEL (ENSBMSG00010018108) #16	SLAIN1 (ENSBMSG00010018187) #17	EDNRB (ENSBMSG00010018307) #18	ENSBMSG00010018327	POU4F1 (ENSBMSG00010018346) #19	OBI1 (ENSBMSG00010018362) #20	RBM26 (ENSBMSG00010018424) #21	NDFIP2 (ENSBMSG00010018773) #22	ENSBMSG00010018790	SPRY2 (ENSBMSG00010018812) #23	ENSBMSG00010018826	ENSBMSG00010018840	ENSBMSG00010018865	ENSBMSG00010018878	SLITRK1 (ENSBMSG00010018887) #24	ENSBMSG00010018896	SLITRK6 (ENSBMSG00010018912) #25	SLITRK5 (ENSBMSG00010018926) #26	GPC5 (ENSBMSG00010018992) #27	GPC6 (ENSBMSG00010019116) #28	DCT (ENSBMSG00010019181) #29	TGDS (ENSBMSG00010019226) #30	GPR180 (ENSBMSG00010019260) #31
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000012721.b #22
Common shrew	MODERN SPECIES	281																ENSSARG00000006029 #22
Hedgehog	MODERN SPECIES	630																NDFIP2 (ENSEEUG00000002235) #22
Atlantogenata	ANCESTRAL SPECIES	89	ENSGT00940000158486	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Afrotheria	ANCESTRAL SPECIES	105	ENSGT00940000158486	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37	ENSGT00950000183071.a.a.a
Afrotheria_a	ANCESTRAL SPECIES	106	ENSGT00940000158486	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37	ENSGT00950000183071.a.a.a
Elephant	MODERN SPECIES	26	COMMD6 (ENSLAFG00000000578)	UCHL3 (ENSLAFG00000000580) #7	LMO7 (ENSLAFG00000000582) #8	KCTD12 (ENSLAFG00000002031) #9	ACOD1 (ENSLAFG00000013014) #10	CLN5 (ENSLAFG00000013020) #11	FBXL3 (ENSLAFG00000026986) #13	MYCBP2 (ENSLAFG00000008606) #14	ENSLAFG00000026937	SCEL (ENSLAFG00000010018) #16	SLAIN1 (ENSLAFG00000010027) #17	EDNRB (ENSLAFG00000013124) #18	ENSLAFG00000021698 #19	OBI1 (ENSLAFG00000001600) #20	RBM26 (ENSLAFG00000010689) #21	NDFIP2 (ENSLAFG00000000864) #22	SPRY2 (ENSLAFG00000001670) #23	ENSLAFG00000027611	SLITRK1 (ENSLAFG00000014093) #24	SLITRK6 (ENSLAFG00000013927) #25	ENSLAFG00000032529	SLITRK5 (ENSLAFG00000022727) #26	GPC5 (ENSLAFG00000001353) #27	ENSLAFG00000026253	ENSLAFG00000007928 #28	DCT (ENSLAFG00000002356) #29	TGDS (ENSLAFG00000003923) #30	GPR180 (ENSLAFG00000003925) #31	ABCC4 (ENSLAFG00000015818) #33	CLDN10 (ENSLAFG00000008641) #34	DZIP1 (ENSLAFG00000008646) #35
Hyrax	MODERN SPECIES	10903																NDFIP2 (ENSPCAG00000012518) #22
Tenrec	MODERN SPECIES	577																NDFIP2 (ENSETEG00000017209) #22
Xenarthra	ANCESTRAL SPECIES	1154														ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23
Armadillo	MODERN SPECIES	526														OBI1 (ENSDNOG00000038257) #20	RBM26 (ENSDNOG00000004726) #21	NDFIP2 (ENSDNOG00000046895) #22	SPRY2 (ENSDNOG00000014714) #23
Sloth	MODERN SPECIES	470																NDFIP2 (ENSCHOG00000004565) #22
Marsupialia	ANCESTRAL SPECIES	8	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000003706.a.b.b	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Opossum	DUPLICATION
Opossum	MODERN SPECIES	6	TBC1D4 (ENSMODG00000000964)	ENSMODG00000049399	UCHL3 (ENSMODG00000000990) #7	LMO7 (ENSMODG00000001099) #8	ACOD1 (ENSMODG00000001141) #10	FBXL3 (ENSMODG00000001143) #13	CLN5 (ENSMODG00000040189) #11	ENSMODG00000037716	MYCBP2 (ENSMODG00000001380) #14	SCEL (ENSMODG00000001434) #16	SLAIN1 (ENSMODG00000001481) #17	EDNRB (ENSMODG00000001507) #18	POU4F1 (ENSMODG00000001515) #19	OBI1 (ENSMODG00000001525) #20	RBM26 (ENSMODG00000001574) #21	ENSMODG00000001586 #22	SPRY2 (ENSMODG00000001592) #23	ENSMODG00000041893	ENSMODG00000024965	ENSMODG00000038503	ENSMODG00000029077	ENSMODG00000043469	ENSMODG00000006268	ENSMODG00000029389	PCDH20 (ENSMODG00000006279)	ENSMODG00000024918	ENSMODG00000006329	DIAPH3 (ENSMODG00000006363)	ENSMODG00000047947	HDAC8 (ENSMODG00000024915)	PCDH17 (ENSMODG00000006409)
Opossum	MODERN SPECIES	7	ENSMODG00000040685	ENSMODG00000036975	ENSMODG00000039986	ENSMODG00000037963	ENSMODG00000049786	ENSMODG00000001635	ENSMODG00000047544	ENSMODG00000045651	ENSMODG00000001667	ENSMODG00000047150	ENSMODG00000001675	ENSMODG00000025468	ENSMODG00000039490	ENSMODG00000028415	ENSMODG00000037836	ENSMODG00000024262 #22	ENSMODG00000024260	ENSMODG00000047683	ENSMODG00000049929	ENSMODG00000050337	ENSMODG00000042301	CUL1 (ENSMODG00000001825)	ENSMODG00000001852	ENSMODG00000047400	PDIA4 (ENSMODG00000001864)	ENSMODG00000001880	ENSMODG00000028242	ENSMODG00000001961	ENSMODG00000038448	ENSMODG00000037652	ZNF398 (ENSMODG00000001974)
Marsupialia_b	DUPLICATION
Marsupialia_b	ANCESTRAL SPECIES																	ENSGT00390000012721.b.c #22
Diprotodontia	ANCESTRAL SPECIES																	ENSGT00390000012721.b.c #22
Diprotodontia_a	ANCESTRAL SPECIES																	ENSGT00390000012721.b.c #22
koala	MODERN SPECIES	241			ENSPCIG00000018117	ENSPCIG00000034059 #9	ACOD1 (ENSPCIG00000018121) #10	ENSPCIG00000018122	CLN5 (ENSPCIG00000018123) #11	FBXL3 (ENSPCIG00000018124) #13	MYCBP2 (ENSPCIG00000018184) #14	SCEL (ENSPCIG00000013382) #16	SLAIN1 (ENSPCIG00000013376) #17	EDNRB (ENSPCIG00000013373) #18	POU4F1 (ENSPCIG00000033769) #19	OBI1 (ENSPCIG00000014718) #20	RBM26 (ENSPCIG00000014681) #21	ENSPCIG00000014656 #22
Marsupialia_b	ANCESTRAL SPECIES	7	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000003706.a.b.b	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b.d #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Tasmanian devil	MODERN SPECIES	2	ENSSHAG00000024885	UCHL3 (ENSSHAG00000000154) #7	LMO7 (ENSSHAG00000005077) #8	KCTD12 (ENSSHAG00000028293) #9	ACOD1 (ENSSHAG00000028030) #10	ENSSHAG00000015186	CLN5 (ENSSHAG00000015261) #11	FBXL3 (ENSSHAG00000020565) #13	MYCBP2 (ENSSHAG00000015525) #14	SCEL (ENSSHAG00000000863) #16	SLAIN1 (ENSSHAG00000005168) #17	EDNRB (ENSSHAG00000007917) #18	POU4F1 (ENSSHAG00000013203) #19	OBI1 (ENSSHAG00000013284) #20	RBM26 (ENSSHAG00000015986) #21	NDFIP2 (ENSSHAG00000031558) #22	ENSSHAG00000028467 #23	ENSSHAG00000006494	ENSSHAG00000026963	ENSSHAG00000023879	ENSSHAG00000031516	ENSSHAG00000003252 #24	ENSSHAG00000021875	ENSSHAG00000029151	SLITRK6 (ENSSHAG00000030008) #25	SLITRK5 (ENSSHAG00000009199) #26	ENSSHAG00000021306	ENSSHAG00000022741	GPC5 (ENSSHAG00000029916) #27	GPC6 (ENSSHAG00000022631) #28	DCT (ENSSHAG00000017147) #29
Diprotodontia	ANCESTRAL SPECIES	83	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000003706.a.b.b	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b.d #22	ENSGT00950000183055.a.a #23
Wallaby	MODERN SPECIES	1200																NDFIP2 (ENSMEUG00000006791) #22
Diprotodontia_a	ANCESTRAL SPECIES	80	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000003706.a.b.b	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b.d #22	ENSGT00950000183055.a.a #23
Common wonbat	MODERN SPECIES	1129	UCHL3 (ENSVURG00010009372) #7	LMO7 (ENSVURG00010009290) #8	ENSVURG00010009271	KCTD12 (ENSVURG00010009261) #9	ACOD1 (ENSVURG00010009255) #10	ENSVURG00010009250	CLN5 (ENSVURG00010009245) #11	FBXL3 (ENSVURG00010009237) #13	MYCBP2 (ENSVURG00010008641) #14	SCEL (ENSVURG00010008287) #16	SLAIN1 (ENSVURG00010008218) #17	EDNRB (ENSVURG00010008192) #18	POU4F1 (ENSVURG00010008174) #19	OBI1 (ENSVURG00010008165) #20	RBM26 (ENSVURG00010008130) #21	NDFIP2 (ENSVURG00010008107) #22	SPRY2 (ENSVURG00010008083) #23	ENSVURG00010008070
koala	MODERN SPECIES	70	ENSPCIG00000032764	ENSPCIG00000014476	ENSPCIG00000014481	ENSPCIG00000014483	ENSPCIG00000014486	ENSPCIG00000035116	ENSPCIG00000014489	ENSPCIG00000034799	ENSPCIG00000036747	ENSPCIG00000014491	ENSPCIG00000014493	ENSPCIG00000014494	ENSPCIG00000014495	ENSPCIG00000014497	ENSPCIG00000030422	ENSPCIG00000019635 #22	ENSPCIG00000036881
Platypus	MODERN SPECIES	1	TMEM127 (ENSOANG00000049466)	CIAO1 (ENSOANG00000008950)	SNRNP200 (ENSOANG00000051221)	NCAPH (ENSOANG00000002709)	ENSOANG00000041889	ARID5A (ENSOANG00000045279)	KANSL3 (ENSOANG00000002199)	ENSOANG00000015451	LMAN2L (ENSOANG00000015450)	ENSOANG00000008533	DNAH6 (ENSOANG00000004687)	EDNRB (ENSOANG00000004763) #18	POU4F1 (ENSOANG00000042377) #19	OBI1 (ENSOANG00000008745) #20	RBM26 (ENSOANG00000001531) #21	NDFIP2 (ENSOANG00000029384) #22	SPRY2 (ENSOANG00000004665) #23	SLITRK1 (ENSOANG00000044719) #24	ENSOANG00000031133	SLITRK6 (ENSOANG00000016038) #25	SLITRK5 (ENSOANG00000048743) #26	GPC5 (ENSOANG00000014924) #27	ENSOANG00000014923 #28	DCT (ENSOANG00000014922) #29	TGDS (ENSOANG00000014920) #30	GPR180 (ENSOANG00000014919) #31	SOX21 (ENSOANG00000040594) #32	ABCC4 (ENSOANG00000014917) #33	CLDN10 (ENSOANG00000042413) #34	DZIP1 (ENSOANG00000014916) #35	DNAJC3 (ENSOANG00000014915) #36
Sauria	ANCESTRAL SPECIES	2	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a.j #9	ENSGT00940000161074.a.i #9	ENSGT00390000015700.a #10	ENSGT00390000003706.a.b.b	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Archelosauria	ANCESTRAL SPECIES		ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a.j #9	ENSGT00940000161074.a.i #9	ENSGT00390000015700.a #10	ENSGT00390000003706.a.b.b	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Archosauria	ANCESTRAL SPECIES	2	ENSGT00950000183159.b #8	ENSGT00940000161074.a.j #9	ENSGT00940000161074.a.i #9	ENSGT00390000015700.a #10	ENSGT00390000003706.a.b.b	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT01080000257332.A.a.b	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Aves	ANCESTRAL SPECIES		ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a.j #9	ENSGT00940000161074.a.i #9	ENSGT00390000015700.a #10	ENSGT00390000003706.a.b.b	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Neognathae	ANCESTRAL SPECIES	1	ENSGT00950000183159.b #8	ENSGT00940000161074.a.j #9	ENSGT00940000161074.a.i #9	ENSGT00390000015700.a #10	ENSGT00390000003706.a.b.b	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT01080000257332.A.a.b	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b.z #28	ENSGT01050000244897.a.b.b.b.y.b #28	ENSGT01050000244897.a.b.b.b.y.a #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35
Galloanserae	ANCESTRAL SPECIES	1	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a.j #9	ENSGT00390000015700.a #10	ENSGT00390000003706.a.b.b	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT01080000257332.A.a.b.b	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b.y.b #28	ENSGT01050000244897.a.b.b.b.y.a #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36
Anatidae	ANCESTRAL SPECIES	82	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a.j #9	ENSGT00390000015700.a #10	ENSGT00390000003706.a.b.b	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT01080000257332.A.a.b.b	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23
Duck	MODERN SPECIES		COMMD6 (ENSAPLG00000005004)	UCHL3 (ENSAPLG00000005020) #7	LMO7 (ENSAPLG00000005073) #8	ENSAPLG00000022118	ENSAPLG00000023760 #9	ACOD1 (ENSAPLG00000005580) #10	ENSAPLG00000005619	CLN5 (ENSAPLG00000026549) #11	ENSAPLG00000008898	ENSAPLG00000019759	MYCBP2 (ENSAPLG00000012782) #14	SLAIN1 (ENSAPLG00000012744) #17	EDNRB (ENSAPLG00000012291) #18	OBI1 (ENSAPLG00000012233) #20	RBM26 (ENSAPLG00000011536) #21	NDFIP2 (ENSAPLG00000011385) #22	SPRY2 (ENSAPLG00000011597) #23	ENSAPLG00000023803	ME3 (ENSAPLG00000006405)	PRSS23 (ENSAPLG00000011467)	FZD4 (ENSAPLG00000006281)	ENSAPLG00000020776	ENSAPLG00000030227	ENSAPLG00000006242	ENSAPLG00000024135	RAB38 (ENSAPLG00000009310)	CTSC (ENSAPLG00000009381)	ENSAPLG00000031170	GRM5 (ENSAPLG00000009575)	TYR (ENSAPLG00000012676)	NOX4 (ENSAPLG00000012543)
Pink-footed goose	MODERN SPECIES	113	KCTD12 (ENSABRG00000013511) #9	ACOD1 (ENSABRG00000013513) #10	ENSABRG00000013523	CLN5 (ENSABRG00000013529) #11	FBXL3 (ENSABRG00000013534) #13	MYCBP2 (ENSABRG00000013872) #14	SCEL (ENSABRG00000016317) #16	SLAIN1 (ENSABRG00000016333) #17	ENSABRG00000016348	EDNRB (ENSABRG00000016354) #18	ENSABRG00000016358	POU4F1 (ENSABRG00000016364) #19	OBI1 (ENSABRG00000016373) #20	ENSABRG00000016382	RBM26 (ENSABRG00000016390) #21	NDFIP2 (ENSABRG00000016407) #22	SPRY2 (ENSABRG00000016416) #23
Phasianidae	ANCESTRAL SPECIES		ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a.j #9	ENSGT00940000161074.a.i #9	ENSGT00390000015700.a #10	ENSGT00390000003706.a.b.b	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a.a #27	ENSGT01050000244897.a.b.b.b.y.a #28	ENSGT00940000156856.j #29	ENSGT00940000159196 #30	ENSGT00940000153981.A.p #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862.k.b #35	ENSGT00940000156862.l #35	ENSGT00940000159806 #36
Japanese quail	MODERN SPECIES		LMO7 (ENSCJPG00005019565) #8	ENSCJPG00005019562	KCTD12 (ENSCJPG00005019561) #9	ENSCJPG00005019560	ACOD1 (ENSCJPG00005019559) #10	ENSCJPG00005019558	CLN5 (ENSCJPG00005019557) #11	ENSCJPG00005019556	MYCBP2 (ENSCJPG00005019482) #14	SCEL (ENSCJPG00005019473) #16	SLAIN1 (ENSCJPG00005019472) #17	EDNRB (ENSCJPG00005019471) #18	POU4F1 (ENSCJPG00005019464) #19	OBI1 (ENSCJPG00005019463) #20	RBM26 (ENSCJPG00005019458) #21	NDFIP2 (ENSCJPG00005019457) #22	SPRY2 (ENSCJPG00005019453) #23	SLITRK1 (ENSCJPG00005019448) #24	SLITRK6 (ENSCJPG00005019443) #25	ENSCJPG00005019442	SLITRK5 (ENSCJPG00005019441) #26	ENSCJPG00005019439	ENSCJPG00005019438	GPC5 (ENSCJPG00005019430) #27	GPC6 (ENSCJPG00005019426) #28	DCT (ENSCJPG00005019425) #29	TGDS (ENSCJPG00005019423) #30	GPR180 (ENSCJPG00005019422) #31	SOX21 (ENSCJPG00005019421) #32	ABCC4 (ENSCJPG00005019419) #33	CLDN10 (ENSCJPG00005019418) #34
Phasianidae_b	ANCESTRAL SPECIES		ENSGT00950000183159.b #8	ENSGT00940000161074.a.j #9	ENSGT00940000161074.a.i #9	ENSGT01030000234722.a.a.a.b.a.b.c.a.b.b	ENSGT00390000015700.a #10	ENSGT00390000003706.a.b.b	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a.a #27	ENSGT01050000244897.a.b.b.b.y.a #28	ENSGT00940000156856.j #29	ENSGT00940000159196 #30	ENSGT00940000153981.A.p #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862.k.b #35	ENSGT00940000156862.l #35	ENSGT00940000159806 #36
Turkey	MODERN SPECIES		TBC1D4 (ENSMGAG00000014943)	ENSMGAG00000014942	UCHL3 (ENSMGAG00000014941) #7	LMO7 (ENSMGAG00000014940) #8	ENSMGAG00000015555	ACOD1 (ENSMGAG00000014936) #10	ENSMGAG00000014937	CLN5 (ENSMGAG00000014938) #11	FBXL3 (ENSMGAG00000014939) #13	MYCBP2 (ENSMGAG00000014935) #14	SLAIN1 (ENSMGAG00000014932) #17	EDNRB (ENSMGAG00000014931) #18	POU4F1 (ENSMGAG00000020777) #19	OBI1 (ENSMGAG00000014929) #20	RBM26 (ENSMGAG00000014927) #21	NDFIP2 (ENSMGAG00000014926) #22	SPRY2 (ENSMGAG00000015546) #23	SLITRK1 (ENSMGAG00000015544) #24	SLITRK6 (ENSMGAG00000014924) #25	SLITRK5 (ENSMGAG00000020355) #26	ENSMGAG00000014921 #27	ENSMGAG00000018214 #27	ENSMGAG00000015540	ENSMGAG00000019665	ENSMGAG00000017334	ENSMGAG00000016790 #37	ENSMGAG00000021168 #37	DNAJC3 (ENSMGAG00000014907) #36	ENSMGAG00000020416 #34	ENSMGAG00000014908 #35	ENSMGAG00000015190 #35
Chicken	MODERN SPECIES		ENSGALG00010000796 #9	KCTD12 (ENSGALG00010000795) #9	ENSGALG00010000793	ACOD1 (ENSGALG00010000791) #10	GATD3AL1 (ENSGALG00010000788)	CLN5 (ENSGALG00010000785) #11	FBXL3 (ENSGALG00010000784) #13	MYCBP2 (ENSGALG00010000777) #14	ENSGALG00010000762	SCEL (ENSGALG00010000757) #16	SLAIN1 (ENSGALG00010000734) #17	EDNRB (ENSGALG00010000729) #18	POU4F1 (ENSGALG00010000726) #19	OBI1 (ENSGALG00010000724) #20	RBM26 (ENSGALG00010000720) #21	NDFIP2 (ENSGALG00010000717) #22	SPRY2 (ENSGALG00010000711) #23	ENSGALG00010006079	SLITRK1 (ENSGALG00010005949) #24	SLITRK6 (ENSGALG00010005934) #25	ENSGALG00010005901	SLITRK5 (ENSGALG00010005885) #26	ENSGALG00010005882	GPC5 (ENSGALG00010005433) #27	GPC6 (ENSGALG00010005163) #28	DCT (ENSGALG00010005140) #29	TGDS (ENSGALG00010005460) #30	GPR180 (ENSGALG00010005438) #31	SOX21 (ENSGALG00010006075) #32	ABCC4 (ENSGALG00010005402) #33	CLDN10 (ENSGALG00010005387) #34
Neognathae_b	ANCESTRAL SPECIES		ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a.j #9	ENSGT00940000161074.a.i #9	ENSGT00390000015700.a #10	ENSGT00390000003706.a.b.b	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b.y.b #28	ENSGT01050000244897.a.b.b.b.y.a #28	ENSGT01050000244897.a.b.b.b.z #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35
Neognathae_c	ANCESTRAL SPECIES	11	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a.j #9	ENSGT00940000161074.a.i #9	ENSGT00390000015700.a #10	ENSGT00390000003706.a.b.b	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b.z #28	ENSGT01050000244897.a.b.b.b.y.b #28	ENSGT01050000244897.a.b.b.b.y.a #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35
Golden eagle	MODERN SPECIES	5	COMMD6 (ENSACCG00020014723)	UCHL3 (ENSACCG00020014706) #7	LMO7 (ENSACCG00020014665) #8	ENSACCG00020014646 #9	KCTD12 (ENSACCG00020014637) #9	ACOD1 (ENSACCG00020014629) #10	ENSACCG00020014614	CLN5 (ENSACCG00020014599) #11	FBXL3 (ENSACCG00020014592) #13	MYCBP2 (ENSACCG00020014522) #14	SLAIN1 (ENSACCG00020014479) #17	EDNRB (ENSACCG00020014445) #18	POU4F1 (ENSACCG00020014407) #19	OBI1 (ENSACCG00020014391) #20	RBM26 (ENSACCG00020014363) #21	NDFIP2 (ENSACCG00020014319) #22	SPRY2 (ENSACCG00020014295) #23	SLITRK1 (ENSACCG00020014279) #24	SLITRK6 (ENSACCG00020014267) #25	ENSACCG00020014253	SLITRK5 (ENSACCG00020014219) #26	GPC5 (ENSACCG00020014152) #27	ENSACCG00020014127 #28	ENSACCG00020014114 #28	DCT (ENSACCG00020014098) #29	TGDS (ENSACCG00020014077) #30	GPR180 (ENSACCG00020014066) #31	ABCC4 (ENSACCG00020013160) #33	CLDN10 (ENSACCG00020011279) #34	ENSACCG00020011267 #35	ENSACCG00020011247 #35
Kakapo	MODERN SPECIES	11	TBC1D4 (ENSSHBG00005003496)	COMMD6 (ENSSHBG00005003431)	UCHL3 (ENSSHBG00005003409) #7	LMO7 (ENSSHBG00005003304) #8	KCTD12 (ENSSHBG00005003267) #9	ACOD1 (ENSSHBG00005003247) #10	ENSSHBG00005003236	CLN5 (ENSSHBG00005000601) #11	FBXL3 (ENSSHBG00005000599) #13	MYCBP2 (ENSSHBG00005000549) #14	SLAIN1 (ENSSHBG00005000432) #17	EDNRB (ENSSHBG00005000429) #18	POU4F1 (ENSSHBG00005010941) #19	OBI1 (ENSSHBG00005010909) #20	RBM26 (ENSSHBG00005010808) #21	NDFIP2 (ENSSHBG00005010754) #22	SPRY2 (ENSSHBG00005010724) #23	SLITRK1 (ENSSHBG00005010704) #24	SLITRK6 (ENSSHBG00005010677) #25	SLITRK5 (ENSSHBG00005010648) #26	ENSSHBG00005010619	ENSSHBG00005010580	GPC5 (ENSSHBG00005010499) #27	GPC6 (ENSSHBG00005010362) #28	DCT (ENSSHBG00005010307) #29	ENSSHBG00005010287	GPR180 (ENSSHBG00005010264) #31	SOX21 (ENSSHBG00005010229) #32	ABCC4 (ENSSHBG00005010168) #33	CLDN10 (ENSSHBG00005010124) #34	DZIP1 (ENSSHBG00005010038) #35
Passeriformes	ANCESTRAL SPECIES	1	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a.j #9	ENSGT00940000161074.a.i #9	ENSGT00390000015700.a #10	ENSGT00390000003706.a.b.b	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b.z #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Passeriformes_d	ANCESTRAL SPECIES	1	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a.j #9	ENSGT00940000161074.a.i #9	ENSGT00390000015700.a #10	ENSGT00390000003706.a.b.b	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b.z #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Flycatcher	MODERN SPECIES		TBC1D4 (ENSFALG00000000954)	ENSFALG00000000948	UCHL3 (ENSFALG00000024336) #7	LMO7 (ENSFALG00000000902) #8	KCTD12 (ENSFALG00000024089) #9	ACOD1 (ENSFALG00000028174) #10	ENSFALG00000000868	CLN5 (ENSFALG00000000862) #11	FBXL3 (ENSFALG00000000860) #13	ENSFALG00000028799 #14	ENSFALG00000026672 #14	SLAIN1 (ENSFALG00000000782) #17	EDNRB (ENSFALG00000000779) #18	OBI1 (ENSFALG00000000776) #20	RBM26 (ENSFALG00000000769) #21	NDFIP2 (ENSFALG00000026200) #22	SPRY2 (ENSFALG00000014733) #23	ENSFALG00000026210	SLITRK1 (ENSFALG00000014705) #24	SLITRK6 (ENSFALG00000014684) #25	SLITRK5 (ENSFALG00000013408) #26	ENSFALG00000025660	GPC5 (ENSFALG00000004547) #27	ENSFALG00000026484 #28	ENSFALG00000004537 #28	DCT (ENSFALG00000004505) #29	TGDS (ENSFALG00000004497) #30	GPR180 (ENSFALG00000004490) #31	SOX21 (ENSFALG00000015205) #32	ABCC4 (ENSFALG00000004486) #33	CLDN10 (ENSFALG00000028403) #34
Passeriformes_g	ANCESTRAL SPECIES	2	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a.j #9	ENSGT00940000161074.a.i #9	ENSGT00390000015700.a #10	ENSGT00390000003706.a.b.b	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b.z #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Passeroidea	ANCESTRAL SPECIES	5	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a.j #9	ENSGT00940000161074.a.i #9	ENSGT00390000015700.a #10	ENSGT00390000003706.a.b.b	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25
Zebra finch	MODERN SPECIES		ENSTGUG00000012533	UCHL3 (ENSTGUG00000012534) #7	LMO7 (ENSTGUG00000012539) #8	ENSTGUG00000012550 #9	KCTD12 (ENSTGUG00000023672) #9	ACOD1 (ENSTGUG00000012551) #10	ENSTGUG00000012552	CLN5 (ENSTGUG00000023833) #11	FBXL3 (ENSTGUG00000012555) #13	MYCBP2 (ENSTGUG00000012556) #14	SLAIN1 (ENSTGUG00000012572) #17	EDNRB (ENSTGUG00000022162) #18	POU4F1 (ENSTGUG00000027943) #19	OBI1 (ENSTGUG00000012583) #20	RBM26 (ENSTGUG00000012585) #21	NDFIP2 (ENSTGUG00000012593) #22	SPRY2 (ENSTGUG00000012596) #23	SLITRK6 (ENSTGUG00000012602) #25	C11orf87 (ENSTGUG00000021632)	DDX10 (ENSTGUG00000012605)	ENSTGUG00000024031	ENSTGUG00000020705	POGLUT3 (ENSTGUG00000012620)	ATM (ENSTGUG00000012622)	NPAT (ENSTGUG00000012634)	ACAT1 (ENSTGUG00000012643)	CUL5 (ENSTGUG00000012650)	RAB39A (ENSTGUG00000029732)	SLC35F2 (ENSTGUG00000012641)	ENSTGUG00000012656	ELMOD1 (ENSTGUG00000012657)
Common canary	MODERN SPECIES	4	TBC1D4 (ENSSCAG00000015207)	COMMD6 (ENSSCAG00000015216)	UCHL3 (ENSSCAG00000015217) #7	LMO7 (ENSSCAG00000015219) #8	ENSSCAG00000015227	ACOD1 (ENSSCAG00000015234) #10	ENSSCAG00000015237	CLN5 (ENSSCAG00000015239) #11	FBXL3 (ENSSCAG00000015241) #13	MYCBP2 (ENSSCAG00000015328) #14	SCEL (ENSSCAG00000015733) #16	SLAIN1 (ENSSCAG00000015741) #17	EDNRB (ENSSCAG00000015759) #18	OBI1 (ENSSCAG00000015791) #20	RBM26 (ENSSCAG00000015808) #21	NDFIP2 (ENSSCAG00000015817) #22	SPRY2 (ENSSCAG00000015823) #23	SLITRK1 (ENSSCAG00000015830) #24	SLITRK6 (ENSSCAG00000015836) #25	MPLKIP (ENSSCAG00000015839)	ENSSCAG00000015841	ENSSCAG00000015850 #26	GPC5 (ENSSCAG00000015881) #27	ENSSCAG00000015894 #28	ENSSCAG00000015895 #28	DCT (ENSSCAG00000015903) #29	TGDS (ENSSCAG00000015907) #30	GPR180 (ENSSCAG00000015911) #31	ABCC4 (ENSSCAG00000015921) #33	CLDN10 (ENSSCAG00000015926) #34	DZIP1 (ENSSCAG00000015930) #35
Medium ground finch	MODERN SPECIES	30	TBC1D4 (ENSGFOG00000009773)	COMMD6 (ENSGFOG00000009757)	UCHL3 (ENSGFOG00000009751) #7	LMO7 (ENSGFOG00000009681) #8	ACOD1 (ENSGFOG00000009673) #10	ENSGFOG00000009668	CLN5 (ENSGFOG00000009654) #11	FBXL3 (ENSGFOG00000009649) #13	MYCBP2 (ENSGFOG00000008307) #14	SCEL (ENSGFOG00000008179) #16	SLAIN1 (ENSGFOG00000008175) #17	EDNRB (ENSGFOG00000008106) #18	POU4F1 (ENSGFOG00000008098) #19	OBI1 (ENSGFOG00000008090) #20	RBM26 (ENSGFOG00000008039) #21	NDFIP2 (ENSGFOG00000008020) #22	SPRY2 (ENSGFOG00000008015) #23	SLITRK1 (ENSGFOG00000008012) #24
Great tit	MODERN SPECIES		ENSPMJG00000013621	ENSPMJG00000013620	UCHL3 (ENSPMJG00000013619) #7	LMO7 (ENSPMJG00000013612) #8	ACOD1 (ENSPMJG00000013603) #10	ENSPMJG00000013596	CLN5 (ENSPMJG00000013595) #11	FBXL3 (ENSPMJG00000013593) #13	MYCBP2 (ENSPMJG00000013241) #14	ENSPMJG00000013211 #16	SLAIN1 (ENSPMJG00000013210) #17	EDNRB (ENSPMJG00000013209) #18	POU4F1 (ENSPMJG00000013207) #19	OBI1 (ENSPMJG00000013206) #20	RBM26 (ENSPMJG00000013194) #21	NDFIP2 (ENSPMJG00000013190) #22	SPRY2 (ENSPMJG00000013180) #23	SLITRK1 (ENSPMJG00000013173) #24	SLITRK6 (ENSPMJG00000013163) #25	SLITRK5 (ENSPMJG00000013159) #26	GPC5 (ENSPMJG00000013149) #27	GPC6 (ENSPMJG00000013146) #28	DCT (ENSPMJG00000013144) #29	TGDS (ENSPMJG00000013143) #30	GPR180 (ENSPMJG00000013142) #31	SOX21 (ENSPMJG00000013140) #32	ABCC4 (ENSPMJG00000013136) #33	CLDN10 (ENSPMJG00000013128) #34	DZIP1 (ENSPMJG00000013127) #35	DNAJC3 (ENSPMJG00000013126) #36	UGGT2 (ENSPMJG00000013121) #37
African ostrich	MODERN SPECIES	943													ENSSCUG00000016489 #20	ENSSCUG00000016492 #20	RBM26 (ENSSCUG00000016610) #21	NDFIP2 (ENSSCUG00000016723) #22
Australian saltwater crocodile	MODERN SPECIES	27	KLF5 (ENSCPRG00005018683)	KLF12 (ENSCPRG00005018681)	TBC1D4 (ENSCPRG00005018679)	ENSCPRG00005018676	ENSCPRG00005018675	UCHL3 (ENSCPRG00005018669) #7	LMO7 (ENSCPRG00005018665) #8	KCTD12 (ENSCPRG00005018658) #9	ACOD1 (ENSCPRG00005018657) #10	CLN5 (ENSCPRG00005018653) #11	FBXL3 (ENSCPRG00005018651) #13	MYCBP2 (ENSCPRG00005018568) #14	EDNRB (ENSCPRG00005018524) #18	OBI1 (ENSCPRG00005018496) #20	RBM26 (ENSCPRG00005018423) #21	NDFIP2 (ENSCPRG00005018385) #22	SPRY2 (ENSCPRG00005018376) #23	SLITRK1 (ENSCPRG00005018371) #24	SLITRK6 (ENSCPRG00005018364) #25	ENSCPRG00005018362	SLITRK5 (ENSCPRG00005018358) #26	ENSCPRG00005018353	ENSCPRG00005018347	GPC5 (ENSCPRG00005018345) #27	GPC6 (ENSCPRG00005018325) #28	ENSCPRG00005018315 #28	DCT (ENSCPRG00005018312) #29	TGDS (ENSCPRG00005018306) #30	GPR180 (ENSCPRG00005018304) #31	ABCC4 (ENSCPRG00005018293) #33	CLDN10 (ENSCPRG00005018286) #34
Cryptodira	ANCESTRAL SPECIES		ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a.j #9	ENSGT00940000161074.a.i #9	ENSGT00390000015700.a #10	ENSGT00390000003706.a.b.b	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Testudinoidea	ANCESTRAL SPECIES	1	ENSGT00960000186835	ENSGT00950000183159.b #8	ENSGT00940000161074.a.j #9	ENSGT00940000161074.a.i #9	ENSGT00390000015700.a #10	ENSGT00390000003706.a.b.b	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00990000214266	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36
Emydidae	ANCESTRAL SPECIES	30	ENSGT00940000158108	ENSGT00940000158486	ENSGT00950000183159.b #8	ENSGT00940000161074.a.j #9	ENSGT00390000015700.a #10	ENSGT00390000003706.a.b.b	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00990000214266	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36
painted turtle	MODERN SPECIES	2364	KLF12 (ENSCPBG00000026983)	TBC1D4 (ENSCPBG00000026960)	LMO7 (ENSCPBG00000026919) #8	KCTD12 (ENSCPBG00000026912) #9	ACOD1 (ENSCPBG00000026910) #10	ENSCPBG00000026905	CLN5 (ENSCPBG00000026897) #11	FBXL3 (ENSCPBG00000026893) #13	MYCBP2 (ENSCPBG00000026790) #14	SCEL (ENSCPBG00000026742) #16	SLAIN1 (ENSCPBG00000026740) #17	EDNRB (ENSCPBG00000026739) #18	POU4F1 (ENSCPBG00000026737) #19	OBI1 (ENSCPBG00000026735) #20	RBM26 (ENSCPBG00000026731) #21	NDFIP2 (ENSCPBG00000026725) #22	ENSCPBG00000026723	SPRY2 (ENSCPBG00000026721) #23	GRID1 (ENSCPBG00000026712)
Three-toed box turtle	MODERN SPECIES	4	TBC1D4 (ENSTMTG00000016127)	COMMD6 (ENSTMTG00000016917)	UCHL3 (ENSTMTG00000016938) #7	LMO7 (ENSTMTG00000017000) #8	KCTD12 (ENSTMTG00000017285) #9	ACOD1 (ENSTMTG00000017304) #10	ENSTMTG00000017340	CLN5 (ENSTMTG00000017353) #11	ENSTMTG00000017361	MYCBP2 (ENSTMTG00000017740) #14	SLAIN1 (ENSTMTG00000020727) #17	EDNRB (ENSTMTG00000020746) #18	POU4F1 (ENSTMTG00000020754) #19	OBI1 (ENSTMTG00000020761) #20	RBM26 (ENSTMTG00000020771) #21	NDFIP2 (ENSTMTG00000020791) #22	ENSTMTG00000020803	SPRY2 (ENSTMTG00000020812) #23	SLITRK1 (ENSTMTG00000020817) #24	SLITRK6 (ENSTMTG00000020819) #25	SLITRK5 (ENSTMTG00000020822) #26	GPC5 (ENSTMTG00000020846) #27	GPC6 (ENSTMTG00000020865) #28	DCT (ENSTMTG00000020874) #29	TGDS (ENSTMTG00000020911) #30	GPR180 (ENSTMTG00000020920) #31	SOX21 (ENSTMTG00000020923) #32	ABCC4 (ENSTMTG00000020943) #33	ENSTMTG00000021033 #34	ENSTMTG00000021035 #34	DZIP1 (ENSTMTG00000021041) #35
Testudinidae	ANCESTRAL SPECIES		ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a.j #9	ENSGT00940000161074.a.i #9	ENSGT00390000015700.a #10	ENSGT00390000003706.a.b.b	ENSGT00390000010065 #11	ENSGT00940000159491.d	ENSGT00940000155756 #14	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00990000214266	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36
Abingdon island giant tortoise	MODERN SPECIES	2037													POU4F1 (ENSCABG00000020198) #19	OBI1 (ENSCABG00000020196) #20	RBM26 (ENSCABG00000020193) #21	NDFIP2 (ENSCABG00000020192) #22	ENSCABG00000020189	HAPSTR1 (ENSCABG00000020187)	ENSCABG00000020185
Goode s thornscrub tortoise	MODERN SPECIES		UCHL3 (ENSGEVG00005000989) #7	LMO7 (ENSGEVG00005001148) #8	KCTD12 (ENSGEVG00005001444) #9	ACOD1 (ENSGEVG00005001458) #10	ENSGEVG00005001474	CLN5 (ENSGEVG00005001489) #11	ENSGEVG00005001505	ENSGEVG00005001664 #14	ENSGEVG00005002119 #14	SLAIN1 (ENSGEVG00005002137) #17	EDNRB (ENSGEVG00005002170) #18	ENSGEVG00005002197	POU4F1 (ENSGEVG00005002211) #19	OBI1 (ENSGEVG00005002224) #20	RBM26 (ENSGEVG00005002237) #21	NDFIP2 (ENSGEVG00005002260) #22	ENSGEVG00005002266	SPRY2 (ENSGEVG00005002277) #23	ENSGEVG00005002280	SLITRK1 (ENSGEVG00005002289) #24	SLITRK6 (ENSGEVG00005002296) #25	SLITRK5 (ENSGEVG00005002303) #26	GPC5 (ENSGEVG00005002333) #27	GPC6 (ENSGEVG00005002375) #28	DCT (ENSGEVG00005002389) #29	TGDS (ENSGEVG00005002411) #30	GPR180 (ENSGEVG00005002432) #31	SOX21 (ENSGEVG00005002448) #32	ABCC4 (ENSGEVG00005002805) #33	ENSGEVG00005003611 #34	ENSGEVG00005003617 #34
Chinese turtle	MODERN SPECIES	567				KCTD12 (ENSPSIG00000001195) #9	ACOD1 (ENSPSIG00000013462) #10	ENSPSIG00000014132	CLN5 (ENSPSIG00000014523) #11	FBXL3 (ENSPSIG00000015070) #13	MYCBP2 (ENSPSIG00000015858) #14	SCEL (ENSPSIG00000017170) #16	SLAIN1 (ENSPSIG00000006024) #17	EDNRB (ENSPSIG00000006528) #18	OBI1 (ENSPSIG00000007011) #20	RBM26 (ENSPSIG00000007431) #21	ENSPSIG00000007783	NDFIP2 (ENSPSIG00000007796) #22	ENSPSIG00000010278	SPRY2 (ENSPSIG00000010392) #23
Lepidosauria	ANCESTRAL SPECIES	40	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a.j #9	ENSGT00940000161074.a.i #9	ENSGT00390000015700.a #10	ENSGT00390000003706.a.b.b	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Episquamata	ANCESTRAL SPECIES	2	ENSGT00390000017163	ENSGT00940000157563	ENSGT01030000234518.C.a.b.a.b	ENSGT01100000263536.C	ENSGT00950000182999.b.b	ENSGT00940000155972.B	ENSGT00940000155995	ENSGT00940000153476.b	ENSGT00940000155318	ENSGT00940000155502	ENSGT00730000112498	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00390000008063	ENSGT00940000158453.a #26	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Toxicofera	ANCESTRAL SPECIES	2	ENSGT00390000017163	ENSGT00940000157563	ENSGT01030000234518.C.a.b.a.b	ENSGT01100000263536.C	ENSGT00950000182999.b.b	ENSGT00940000155972.B	ENSGT00940000155995	ENSGT00940000153476.b	ENSGT00940000155318	ENSGT00940000155502	ENSGT00730000112498	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00390000008063	ENSGT00940000158453.a #26	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Elapidae	ANCESTRAL SPECIES	13	ENSGT00940000156711	ENSGT00940000158108	ENSGT00940000158486	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a.j #9	ENSGT00940000161074.a.i #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159491	ENSGT00940000155756 #14	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00390000008063	ENSGT00980000199516	ENSGT00940000158453.a #26	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b.c #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36
Elapidae_a	ANCESTRAL SPECIES	70	ENSGT01010000229582	ENSGT00940000156711	ENSGT00940000158108	ENSGT00940000158486	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a.j #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159491	ENSGT00940000155756 #14	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24
Acanthophiinae	ANCESTRAL SPECIES	66	ENSGT01010000229582	ENSGT00940000156711	ENSGT00940000158108	ENSGT00940000158486	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a.j #9	ENSGT00390000015700.a #10	ENSGT00390000010065 #11	ENSGT00940000159491	ENSGT00940000155756 #14	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24
Eastern brown snake	MODERN SPECIES	27	ENSPTXG00000003405	ENSPTXG00000003404	KLF12 (ENSPTXG00000003402)	TBC1D4 (ENSPTXG00000003398)	COMMD6 (ENSPTXG00000003395)	UCHL3 (ENSPTXG00000003393) #7	LMO7 (ENSPTXG00000003391) #8	KCTD12 (ENSPTXG00000003389) #9	ACOD1 (ENSPTXG00000003387) #10	CLN5 (ENSPTXG00000003386) #11	ENSPTXG00000003385	MYCBP2 (ENSPTXG00000003094) #14	POU4F1 (ENSPTXG00000003080) #19	OBI1 (ENSPTXG00000003079) #20	RBM26 (ENSPTXG00000003077) #21	NDFIP2 (ENSPTXG00000003076) #22	SPRY2 (ENSPTXG00000003075) #23	SLITRK1 (ENSPTXG00000003074) #24
Mainland tiger snake	MODERN SPECIES	151													POU4F1 (ENSNSUG00000009607) #19	OBI1 (ENSNSUG00000009608) #20	RBM26 (ENSNSUG00000009637) #21	NDFIP2 (ENSNSUG00000009638) #22	SPRY2 (ENSNSUG00000009639) #23	ENSNSUG00000009640
Blue-lipped sea krait	MODERN SPECIES	7754																NDFIP2 (ENSLLTG00000005483) #22
Indian cobra	MODERN SPECIES	5	KLF5 (ENSNNAG00000013406)	KLF12 (ENSNNAG00000013379)	TBC1D4 (ENSNNAG00000011498)	UCHL3 (ENSNNAG00000011344) #7	ENSNNAG00000011286 #8	ENSNNAG00000011064 #8	ENSNNAG00000011036 #9	KCTD12 (ENSNNAG00000011020) #9	ACOD1 (ENSNNAG00000011001) #10	CLN5 (ENSNNAG00000010975) #11	ENSNNAG00000010644	MYCBP2 (ENSNNAG00000006072) #14	POU4F1 (ENSNNAG00000005696) #19	OBI1 (ENSNNAG00000005683) #20	RBM26 (ENSNNAG00000005338) #21	NDFIP2 (ENSNNAG00000005276) #22	SPRY2 (ENSNNAG00000005255) #23	SLITRK1 (ENSNNAG00000005248) #24	ENSNNAG00000005238	SLITRK6 (ENSNNAG00000005214) #25	DHPS (ENSNNAG00000005190)	ENSNNAG00000005177	SLITRK5 (ENSNNAG00000004814) #26	ENSNNAG00000004772	ENSNNAG00000004756	GPC6 (ENSNNAG00000004682) #28	DCT (ENSNNAG00000004324) #29	TGDS (ENSNNAG00000004254) #30	GPR180 (ENSNNAG00000004064) #31	SOX21 (ENSNNAG00000004030) #32	ENSNNAG00000004009
Lizard	MODERN SPECIES	2	DOCK9 (ENSACAG00000016608)	SLC15A1 (ENSACAG00000016518)	ENSACAG00000042706	STK24 (ENSACAG00000016454)	FARP1 (ENSACAG00000016396)	IPO5 (ENSACAG00000016245)	ENSACAG00000024915	ENSACAG00000038382	EDNRB (ENSACAG00000016202) #18	ENSACAG00000044069	ENSACAG00000040162	POU4F1 (ENSACAG00000016185) #19	OBI1 (ENSACAG00000016170) #20	ENSACAG00000042904	RBM26 (ENSACAG00000016128) #21	NDFIP2 (ENSACAG00000037724) #22	ENSACAG00000036149	SPRY2 (ENSACAG00000016066) #23	ENSACAG00000035699	ENSACAG00000043339	ENSACAG00000041006	ENSACAG00000012756	ENSACAG00000037998	ENSACAG00000040922	ENSACAG00000045471	SLITRK1 (ENSACAG00000000332) #24	ENSACAG00000038695	ENSACAG00000045093	SLITRK6 (ENSACAG00000004440) #25	ENSACAG00000037965	ENSACAG00000037421
Laterata	ANCESTRAL SPECIES		ENSGT00390000017163	ENSGT00940000157563	ENSGT00950000182999.b.b	ENSGT01030000234518.C.a.b.a.b	ENSGT01100000263536.C	ENSGT00940000155972.B	ENSGT00940000155995	ENSGT00940000153476.b	ENSGT00940000155318	ENSGT00940000155502	ENSGT00730000112498	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00390000008063	ENSGT00940000158453.a #26	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232 #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Common wall lizard	MODERN SPECIES	12	SKP1 (ENSPMRG00000014358)	UBAC2 (ENSPMRG00000014361)	GPR183 (ENSPMRG00000014367)	GPR18 (ENSPMRG00000014373)	DOCK9 (ENSPMRG00000015293)	ENSPMRG00000022416	SLC15A1 (ENSPMRG00000022436)	STK24 (ENSPMRG00000022569)	FARP1 (ENSPMRG00000022621)	IPO5 (ENSPMRG00000022890)	ENSPMRG00000023092	EDNRB (ENSPMRG00000023098) #18	POU4F1 (ENSPMRG00000023105) #19	OBI1 (ENSPMRG00000023106) #20	RBM26 (ENSPMRG00000023135) #21	NDFIP2 (ENSPMRG00000023191) #22	SPRY2 (ENSPMRG00000023203) #23	ENSPMRG00000023212	SLITRK1 (ENSPMRG00000023213) #24	ENSPMRG00000023217	ENSPMRG00000023221	ENSPMRG00000023226	SLITRK6 (ENSPMRG00000004559) #25	DHPS (ENSPMRG00000004567)	ENSPMRG00000004582	ENSPMRG00000004588	ENSPMRG00000004590	SLITRK5 (ENSPMRG00000004593) #26	ENSPMRG00000004594	ENSPMRG00000004596	ENSPMRG00000004601
Argentine black and white tegu	MODERN SPECIES	23	TM9SF2 (ENSSMRG00000015235)	UBAC2 (ENSSMRG00000015236)	ENSSMRG00000015237	GPR18 (ENSSMRG00000015238)	DOCK9 (ENSSMRG00000015239)	SLC15A1 (ENSSMRG00000015240)	STK24 (ENSSMRG00000015241)	FARP1 (ENSSMRG00000015242)	IPO5 (ENSSMRG00000015244)	ENSSMRG00000016229	EDNRB (ENSSMRG00000016230) #18	ENSSMRG00000016231	POU4F1 (ENSSMRG00000016233) #19	OBI1 (ENSSMRG00000016234) #20	RBM26 (ENSSMRG00000016237) #21	NDFIP2 (ENSSMRG00000016238) #22	SPRY2 (ENSSMRG00000016242) #23	ENSSMRG00000016244	ENSSMRG00000016246	SLITRK1 (ENSSMRG00000016247) #24	ENSSMRG00000016249	SLITRK6 (ENSSMRG00000016251) #25	DHPS (ENSSMRG00000016252)	ENSSMRG00000016253	SLITRK5 (ENSSMRG00000016254) #26	ENSSMRG00000016258	ENSSMRG00000016264	GPC6 (ENSSMRG00000016266) #28	DCT (ENSSMRG00000016267) #29	TGDS (ENSSMRG00000016268) #30	GPR180 (ENSSMRG00000016269) #31
tuatara	MODERN SPECIES	1219															RBM26 (ENSSPUG00000016635) #21	NDFIP2 (ENSSPUG00000016622) #22	SPRY2 (ENSSPUG00000016614) #23
Anura	ANCESTRAL SPECIES	3	ENSGT00940000154925 #7	ENSGT00950000183159.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000003706.a.b.b	ENSGT00390000010065 #11	ENSGT00990000203541.a.a.b	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT01080000257332.A	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244897.a.b.b.a.b ##28	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232.a #34	ENSGT00940000156862 #35	ENSGT00940000159806 #36	ENSGT00390000004600.b.b #37
Frog	MODERN SPECIES	2	lmo7 (ENSXETG00000004710) #8	kctd12 (ENSXETG00000044262) #9	acod1 (ENSXETG00000030859) #10	XB5871767 [provisional:gatd3b] (ENSXETG00000015466)	cln5 (ENSXETG00000015465) #11	lhfpl5 (ENSXETG00000015463)	fbxl3 (ENSXETG00000046342)	mycbp2 (ENSXETG00000041143) #14	scel (ENSXETG00000024551) #16	slain1 (ENSXETG00000015457) #17	ednrb (ENSXETG00000015454) #18	ENSXETG00000037978	pou4f1 (ENSXETG00000017814) #19	obi1 (ENSXETG00000017813) #20	rbm26 (ENSXETG00000017810) #21	ndfip2 (ENSXETG00000017809) #22	spry2 (ENSXETG00000045936) #23	ENSXETG00000047077	slitrk1 (ENSXETG00000013354) #24	slitrk6 (ENSXETG00000013348) #25	slitrk5 (ENSXETG00000023987) #26	ENSXETG00000047958	ENSXETG00000048618	ENSXETG00000046895	ENSXETG00000042892	gpc6 (ENSXETG00000039039) #28	dct (ENSXETG00000010942) #29	ENSXETG00000044249	tgds (ENSXETG00000010948) #30	gpr180 (ENSXETG00000010953) #31	sox21 (ENSXETG00000043737) #32
Leishan spiny toad	MODERN SPECIES	5	LHFPL5 (ENSLLEG00000001909)	ENSLLEG00000001902	ENSLLEG00000001887	MYCBP2 (ENSLLEG00000001399) #14	ENSLLEG00000001262	SCEL (ENSLLEG00000001004) #16	SLAIN1 (ENSLLEG00000000860) #17	EDNRB (ENSLLEG00000000819) #18	ENSLLEG00000000805	ENSLLEG00000000802	ENSLLEG00000000787	POU4F1 (ENSLLEG00000000771) #19	OBI1 (ENSLLEG00000000738) #20	ENSLLEG00000000717	RBM26 (ENSLLEG00000000545) #21	NDFIP2 (ENSLLEG00000000461) #22	SPRY2 (ENSLLEG00000000439) #23	ENSLLEG00000000429	SLITRK1 (ENSLLEG00000000417) #24	ENSLLEG00000000406	SLITRK6 (ENSLLEG00000000384) #25	SLITRK5 (ENSLLEG00000000373) #26	ENSLLEG00000000366	ENSLLEG00000000360	ENSLLEG00000000326 ##28	ENSLLEG00000000313 #28	ENSLLEG00000000303	ENSLLEG00000000290 #28	DCT (ENSLLEG00000000252) #29	ENSLLEG00000000233	TGDS (ENSLLEG00000003863) #30
Coelacanth	MODERN SPECIES	314					CLN5 (ENSLACG00000000289) #11	ENSLACG00000001447	MYCBP2 (ENSLACG00000003166) #14	ENSLACG00000004403	ENSLACG00000012426	SLAIN1 (ENSLACG00000012586) #17	EDNRB (ENSLACG00000013169) #18	POU4F1 (ENSLACG00000016265) #19	OBI1 (ENSLACG00000016370) #20	ENSLACG00000017023	RBM26 (ENSLACG00000017450) #21	NDFIP2 (ENSLACG00000017711) #22
Actinopterygii	ANCESTRAL SPECIES	3	ENSGT00390000018369	ENSGT00940000154925 #7	ENSGT00950000183159.b.c.b #8	ENSGT00940000161074.a #9	ENSGT00390000015700.a #10	ENSGT00390000003706.a.b.b	ENSGT00390000010065 #11	ENSGT00940000159395 #13	ENSGT00940000155756 #14	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000155232.t.b.a #34	ENSGT00940000153931.b #33	ENSGT00940000155232.t.b.b #34	ENSGT00940000155232.t.a #34	ENSGT00940000156862 #35
Neopterygii	ANCESTRAL SPECIES	13	ENSGT00390000013700	ENSGT00480000042679.b.b	ENSGT00940000155219	ENSGT00940000165888	ENSGT00940000156894	ENSGT00900000143708	ENSGT00940000157767	ENSGT00940000181563	ENSGT00940000155487	ENSGT01040000240375.D	ENSGT00940000156743	ENSGT00940000155079.b	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.b #28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232.t.b.a #34	ENSGT00940000166422	ENSGT00940000166809	ENSGT00940000155232.t.a #34
Osteoglossocephalai	ANCESTRAL SPECIES	22	ENSGT00940000155219.hb.a	ENSGT00940000155219.hb.b	ENSGT00940000165888	ENSGT00940000156894.d	ENSGT00940000156894.c	ENSGT00900000143708	ENSGT00940000157767	ENSGT00940000181563	ENSGT00940000155487	ENSGT01040000240375.D	ENSGT00940000156743	ENSGT00940000155079.b	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.a.a ##28	ENSGT00940000156856 #29	ENSGT00940000159196 #30	ENSGT00940000153981.A #31	ENSGT00940000162795 #32	ENSGT00940000153931.b #33	ENSGT00940000155232.t.b.a #34	ENSGT00940000166422	ENSGT00940000166809	ENSGT00940000155232.t.a.b.a #34
Clupeocephala	ANCESTRAL SPECIES	341																ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.a.b ##28	ENSGT00390000010543	ENSGT00940000155318.b.b	ENSGT00940000155502	ENSGT00940000160594.g.b	ENSGT00950000182897.B.a.b.b.b	ENSGT01030000234621.F.c	ENSGT00950000183071.a.a.a.e.b
Euteleosteomorpha	ANCESTRAL SPECIES	202				ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a	ENSGT00940000165152	ENSGT00940000178790	ENSGT00940000160618	ENSGT00390000006925	ENSGT00940000155607.mc.b	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT00950000182803.B.d.b	ENSGT01060000249008	ENSGT00940000162067	ENSGT00940000158619.p	ENSGT00390000006915.c.c.a	ENSGT00390000013608
Protacanthopterygii	ANCESTRAL SPECIES	27	ENSGT00530000063607.b.j.b	ENSGT00390000002215.i.b	ENSGT00940000155065.`c.b	ENSGT00940000154657.A.d	ENSGT00940000160811.d	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a	ENSGT00940000173761	ENSGT00940000178790	ENSGT00390000006925	ENSGT00940000155607.mc.b	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT00950000182803.B.d.b	ENSGT00980000198599.b.a	ENSGT00940000162067	ENSGT00940000158619.p	ENSGT00390000006915.c.c.a	ENSGT00390000013608	ENSGT00730000111116
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	321	ENSGT00530000063607.b.j.b.a.a	ENSGT00390000002215.i.b.b	ENSGT00940000155065.`c.b.b	ENSGT00940000154657.A.d.b	ENSGT00940000160811.d.a	ENSGT00940000156913.b.j.a.b	ENSGT00390000008042.A.b.d.c	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a.a	ENSGT00940000165152	ENSGT00940000156402.A.a.b.a.b	ENSGT00940000173761	ENSGT00940000155607.mc.b.a	ENSGT00940000156234.a.b.b	ENSGT00940000154713.A.c.b.a	ENSGT00390000012721.b.m #22	ENSGT00950000183055.a.a.g #23	ENSGT00940000159810.f #24	ENSGT00940000160718.e #25	ENSGT00940000158453.a.g #26
Huchen	MODERN SPECIES	18	gpd1c (ENSHHUG00000005782)	ENSHHUG00000005775	ENSHHUG00000005742	LYPD1 (ENSHHUG00000005735)	ENSHHUG00000005665	ENSHHUG00000005446	en1b (ENSHHUG00000005436)	C1QL2 (ENSHHUG00000005414)	STEAP3 (ENSHHUG00000005409)	DBI (ENSHHUG00000005403)	ENSHHUG00000005357	ENSHHUG00000005341	GABRG3 (ENSHHUG00000005307)	GABRA5 (ENSHHUG00000005301)	GABRB3 (ENSHHUG00000005287)	ndfip2 (ENSHHUG00000005282) #22	spry2 (ENSHHUG00000005279) #23	SLITRK1 (ENSHHUG00000005271) #24	slitrk6 (ENSHHUG00000005269) #25	SLITRK5 (ENSHHUG00000005264) #26
Salmoninae_a	ANCESTRAL SPECIES	49	ENSGT00940000158398.i	ENSGT00390000003114.e.b.a.e.a	ENSGT00530000063607.b.j.b.a.a	ENSGT00390000002215.i.b.b	ENSGT00940000155065.`c.b.b	ENSGT00940000154657.A.d.b	ENSGT00940000160811.d.a	ENSGT00940000156913.b.j.a.b	ENSGT00390000008042.A.b.d.c	ENSGT00940000154846.a.a.a	ENSGT00940000156402.A.a.a	ENSGT00940000173761	ENSGT00940000155607.mc.b.a	ENSGT00940000156234.a.b.b	ENSGT00940000154713.A.c.b.a	ENSGT00390000012721.b.m #22	ENSGT00950000183055.a.a.g #23	ENSGT00940000159810.f #24	ENSGT00940000160718.e #25	ENSGT00940000158453.a.g #26	ENSGT00940000155821.c.b.a	ENSGT00940000153904.a.h.e	ENSGT00950000182965.b.nb	ENSGT00950000183035.a.b.b.b	ENSGT00950000182803.B.d.b.ib.a	ENSGT00980000198599.b.a	ENSGT00940000162067.k	ENSGT00940000158619.p.k	ENSGT00390000006915.c.c.a.f	ENSGT00390000013608.i	ENSGT00390000016713.h.a
Oncorhynchus	ANCESTRAL SPECIES	49	ENSGT00940000158398.i	ENSGT00390000003114.e.b.a.e.a	ENSGT00530000063607.b.j.b.a.a	ENSGT00390000002215.i.b.b.a	ENSGT00940000155065.`c.b.b	ENSGT00940000154657.A.d.b	ENSGT00940000160811.d.a.c	ENSGT00940000156913.b.j.a.b	ENSGT00390000008042.A.b.d.c	ENSGT00940000154846.a.a.a.a	ENSGT00940000156402.A.a.a	ENSGT00940000165152	ENSGT00940000155607.mc.b.a	ENSGT00940000156234.a.b.b	ENSGT00940000154713.A.c.b.a	ENSGT00390000012721.b.m #22	ENSGT00950000183055.a.a.g #23	ENSGT00940000159810.f #24	ENSGT00940000160718.e #25	ENSGT00940000158453.a.g #26	ENSGT00940000155821.c.b.a	ENSGT00940000153904.a.h.e	ENSGT00950000182965.b.nb.b	ENSGT00950000183035.a.b.b.b	ENSGT00950000182803.B.d.b.ib.a	ENSGT00940000162067.k	ENSGT00940000158619.p.k	ENSGT00390000006915.c.c.a.f	ENSGT00390000013608.i	ENSGT00390000016713.h.a	ENSGT00730000111116.a.b
Rainbow trout	MODERN SPECIES	9	ENSOMYG00000026801	ENSOMYG00000026755	ENSOMYG00000026466	ENSOMYG00000026340	ENSOMYG00000069602	ENSOMYG00000025707	EN1 (ENSOMYG00000025464)	C1QL2 (ENSOMYG00000025444)	STEAP3 (ENSOMYG00000025427)	DBI (ENSOMYG00000025419)	ENSOMYG00000065838	ENSOMYG00000025381	GABRG3 (ENSOMYG00000024418)	ENSOMYG00000024190	GABRB3 (ENSOMYG00000024114)	ndfip2 (ENSOMYG00000024059) #22	SPRY2 (ENSOMYG00000024043) #23	SLITRK1 (ENSOMYG00000058831) #24	ENSOMYG00000024018	slitrk6 (ENSOMYG00000024002) #25	SLITRK5 (ENSOMYG00000023995) #26	MID1 (ENSOMYG00000023637)	ARHGAP6 (ENSOMYG00000023444)	MSL3 (ENSOMYG00000023369)	ENSOMYG00000023201	PRPS2 (ENSOMYG00000023092)	ENSOMYG00000071029	ENSOMYG00000023021	ENSOMYG00000023008	ENSOMYG00000022986	ENSOMYG00000022965
Oncorhynchus_a	ANCESTRAL SPECIES	6	ENSGT00940000158398.i	ENSGT00390000003114.e.b.a.e.a	ENSGT00530000063607.b.j.b.a.a	ENSGT00390000002215.i.b.b.a	ENSGT00940000155065.`c.b.b	ENSGT00940000154657.A.d.b	ENSGT00940000160811.d.a.c	ENSGT00940000156913.b.j.a.b	ENSGT00390000008042.A.b.d.c	ENSGT00940000154846.a.a.a.a	ENSGT00940000156402.A.a.a	ENSGT00940000165152	ENSGT00940000155607.mc.b.a	ENSGT00940000156234.a.b.b	ENSGT00940000154713.A.c.b.a	ENSGT00390000012721.b.m #22	ENSGT00950000183055.a.a.g #23	ENSGT00940000159810.f #24	ENSGT00940000160718.e #25	ENSGT00940000158453.a.g #26	ENSGT00940000155821.c.b.a	ENSGT00940000153904.a.h.e	ENSGT00950000182965.b.nb.a	ENSGT00950000183035.a.b.b.b	ENSGT00950000182803.B.d.b.ib.a	ENSGT00940000162067.k	ENSGT00940000158619.p.k	ENSGT00390000006915.c.c.a.f	ENSGT00390000013608.i	ENSGT00390000016713.h.a	ENSGT00730000111116.a.b
Coho salmon	MODERN SPECIES	7	ENSOKIG00005012495	ENSOKIG00005012516	LYPD1 (ENSOKIG00005012528)	ENSOKIG00005012574	ENSOKIG00005013020	ENSOKIG00005013180	EN1 (ENSOKIG00005016536)	C1QL2 (ENSOKIG00005016544)	STEAP3 (ENSOKIG00005016556)	DBI (ENSOKIG00005016562)	ENSOKIG00005016581	ENSOKIG00005016609	GABRG3 (ENSOKIG00005016618)	GABRA5 (ENSOKIG00005016626)	GABRB3 (ENSOKIG00005016634)	ndfip2 (ENSOKIG00005016661) #22	ENSOKIG00005016670	SPRY2 (ENSOKIG00005016673) #23	SLITRK1 (ENSOKIG00005016678) #24	slitrk6 (ENSOKIG00005016684) #25	SLITRK5 (ENSOKIG00005016689) #26	ENSOKIG00005016701	ARHGAP6 (ENSOKIG00005016862)	ENSOKIG00005016924	ENSOKIG00005017053	ENSOKIG00005017092	RAB9A (ENSOKIG00005017159)	ENSOKIG00005017167	ENSOKIG00005017200	gemin8 (ENSOKIG00005017206)	MOSPD2 (ENSOKIG00005017225)
Chinook salmon	MODERN SPECIES	5	gpd1c (ENSOTSG00005017702)	NCKAP5 (ENSOTSG00005017700)	ENSOTSG00005017694	actr3 (ENSOTSG00005016031)	ENSOTSG00005011897	en1b (ENSOTSG00005011884)	C1QL2 (ENSOTSG00005011882)	STEAP3 (ENSOTSG00005011880)	DBI (ENSOTSG00005011878)	ENSOTSG00005011876	ENSOTSG00005011873	GABRG3 (ENSOTSG00005011865)	GABRA5 (ENSOTSG00005011863)	GABRB3 (ENSOTSG00005011862)	ENSOTSG00005011861	ndfip2 (ENSOTSG00005011860) #22	spry2 (ENSOTSG00005011859) #23	SLITRK1 (ENSOTSG00005011858) #24	slitrk6 (ENSOTSG00005011856) #25	SLITRK5 (ENSOTSG00005011854) #26	MID1 (ENSOTSG00005011739)	ARHGAP6 (ENSOTSG00005011735)	MSL3 (ENSOTSG00005011734)	ENSOTSG00005011732	PRPS2 (ENSOTSG00005011707)	ENSOTSG00005011706	TCEANC (ENSOTSG00005011698)	rab9a (ENSOTSG00005011696)	gpm6ba (ENSOTSG00005011692)	MOSPD2 (ENSOTSG00005011690)	psmd14 (ENSOTSG00005011688)
Salmo	ANCESTRAL SPECIES	48	ENSGT00390000003114.e.b.a.e.a	ENSGT00530000063607.b.j.b.a.a	ENSGT00390000002215.i.b.a.b	ENSGT00940000155065.ac	ENSGT00940000154657.A.d.b	ENSGT00940000160811.d.a	ENSGT00940000156913.b.j.a.b	ENSGT01100000264922.a	ENSGT00390000008042.A.b.d.c	ENSGT00940000154846.a.a.a	ENSGT00940000156402.A.a.a	ENSGT00940000173761	ENSGT00940000155607.mc.b.a	ENSGT00940000156234.a.b.b	ENSGT00940000154713.A.c.b.a	ENSGT00390000012721.b.m #22	ENSGT00950000183055.a.a.g #23	ENSGT00940000159810.f #24	ENSGT00940000160718.e #25	ENSGT00940000158453.a.g #26	ENSGT00940000155821.c.b.a	ENSGT00940000153904.a.h.e	ENSGT00950000182965.b.nb	ENSGT00950000183035.a.b.b.b	ENSGT00950000182803.B.d.b.ib.a	ENSGT00980000198599.b.a	ENSGT00940000162067.k	ENSGT00940000158619.p.k	ENSGT00390000006915.c.c.a.f	ENSGT00390000013608.i	ENSGT00390000016713.h.a
River trout	MODERN SPECIES	36	gpd1c (ENSSTUG00000014468)	NCKAP5 (ENSSTUG00000014501)	LYPD1 (ENSSTUG00000014520)	actr3 (ENSSTUG00000014546)	ENSSTUG00000015070	en1b (ENSSTUG00000016497)	C1QL2 (ENSSTUG00000016501)	ENSSTUG00000016514	STEAP3 (ENSSTUG00000016577)	DBI (ENSSTUG00000016581)	ENSSTUG00000016586	ENSSTUG00000016603	GABRG3 (ENSSTUG00000016625)	GABRA5 (ENSSTUG00000016656)	GABRB3 (ENSSTUG00000016691)	ndfip2 (ENSSTUG00000016744) #22	spry2 (ENSSTUG00000016775) #23	SLITRK1 (ENSSTUG00000016778) #24	slitrk6 (ENSSTUG00000016779) #25	SLITRK5 (ENSSTUG00000016781) #26	MID1 (ENSSTUG00000016784)	ARHGAP6 (ENSSTUG00000016955)	MSL3 (ENSSTUG00000017105)	ENSSTUG00000017187	PRPS2 (ENSSTUG00000017270)	tmsb4x (ENSSTUG00000017303)	TCEANC (ENSSTUG00000017309)	rab9a (ENSSTUG00000017324)	ENSSTUG00000017332	gemin8 (ENSSTUG00000017393)	MOSPD2 (ENSSTUG00000017397)
Atlantic salmon	MODERN SPECIES	7	ENSSSAG00000055361	ENSSSAG00000066969	ENSSSAG00000103795	ENSSSAG00000066992	ENSSSAG00000067197	ENSSSAG00000092681	EN1 (ENSSSAG00000111087)	C1QL2 (ENSSSAG00000070885)	ENSSSAG00000070933	STEAP3 (ENSSSAG00000070938)	ENSSSAG00000110964	ENSSSAG00000070950	GABRG3 (ENSSSAG00000070959)	ENSSSAG00000070991	GABRB3 (ENSSSAG00000092168)	ndfip2 (ENSSSAG00000071066) #22	SPRY2 (ENSSSAG00000071081) #23	ENSSSAG00000099884	slitrk6 (ENSSSAG00000071089) #25	SLITRK5 (ENSSSAG00000112869) #26	MID1 (ENSSSAG00000071100)	ARHGAP6 (ENSSSAG00000071125)	MSL3 (ENSSSAG00000071270)	ENSSSAG00000071307	PRPS2 (ENSSSAG00000071376)	ENSSSAG00000099933	ENSSSAG00000071391	ENSSSAG00000071398	ENSSSAG00000071417	ENSSSAG00000071400	psmd14 (ENSSSAG00000071447)
Salmoninae	ANCESTRAL SPECIES	676								ENSGT00940000160811.d.b	ENSGT00940000156913.b.j.a.a	ENSGT00390000008042.A.b.d.d	ENSGT00940000156402.A.a.b.a.a	ENSGT00390000006925	ENSGT00940000155607.mc.b.b	ENSGT00940000156234.a.b.a	ENSGT00940000154713.A.c.b.b	ENSGT00390000012721.b.n #22	ENSGT00950000183055.a.a.h #23	ENSGT00940000159810.e #24	ENSGT00940000160718.f #25	ENSGT00940000158453.a.h #26
Salmoninae_a	ANCESTRAL SPECIES	97	ENSGT00940000158398.j	ENSGT00390000003114.e.b.a.f	ENSGT00390000003114.e.b.a.e.b	ENSGT00530000063607.b.j.b.b	ENSGT00390000002215.i.b.a.a	ENSGT00940000155065.`c.b.a	ENSGT00940000154657.A.d.a	ENSGT00940000160811.d.b	ENSGT00940000156913.b.j.a.a	ENSGT00390000008042.A.b.d.d	ENSGT00940000156402.A.a.b.a.b	ENSGT00390000006925	ENSGT00940000155607.mc.b.b	ENSGT00940000156234.a.b.a	ENSGT00940000154713.A.c.b.b	ENSGT00390000012721.b.n #22	ENSGT00950000183055.a.a.h #23	ENSGT00940000159810.e #24	ENSGT00940000160718.f #25	ENSGT00940000158453.a.h #26	ENSGT00940000155821.c.b.b	ENSGT00940000153904.a.h.f	ENSGT00950000182965.b.mb	ENSGT00950000183035.a.b.b.a	ENSGT00950000182803.B.d.b.ib.b	ENSGT01060000249008	ENSGT00940000162067.l	ENSGT00940000158619.p.l	ENSGT00390000006915.c.c.a.e	ENSGT00390000013608.j	ENSGT00390000016713.h.b
Oncorhynchus	ANCESTRAL SPECIES	43	ENSGT00940000158398.j	ENSGT00390000003114.e.b.a.f	ENSGT00530000063607.b.j.b.b	ENSGT00390000002215.i.b.b.b	ENSGT00940000155065.`c.b.a	ENSGT00940000154657.A.d.a	ENSGT00940000160811.d.a.d	ENSGT00940000156913.b.j.a.a	ENSGT00390000008042.A.b.d.d	ENSGT00940000154846.a.a.a.b	ENSGT00940000156402.A.a.b.a.a	ENSGT00390000006925	ENSGT00940000155607.mc.b.b	ENSGT00940000156234.a.b.a	ENSGT00940000154713.A.c.b.b	ENSGT00390000012721.b.n #22	ENSGT00950000183055.a.a.h #23	ENSGT00940000159810.e #24	ENSGT00940000160718.f #25	ENSGT00940000158453.a.h #26	ENSGT00940000155821.c.b.b	ENSGT00940000153904.a.h.f	ENSGT00950000182965.b.mb	ENSGT00950000183035.a.b.b.a	ENSGT00950000182803.B.d.b.ib.b	ENSGT01060000249008	ENSGT00940000162067.l	ENSGT00940000158619.p.l	ENSGT00390000006915.c.c.a.e	ENSGT00390000013608.j	ENSGT00390000016713.h.b
Oncorhynchus_a	ANCESTRAL SPECIES	66	ENSGT00390000003114.e.b.a.f	ENSGT00530000063607.b.j.b.b	ENSGT00390000002215.i.b.b.b	ENSGT00940000155065.ac	ENSGT00940000155065.`c.b.a	ENSGT00940000154657.A.d.a	ENSGT00940000160811.d.a.d	ENSGT00940000156913.b.j.a.a	ENSGT00390000008042.A.b.d.d	ENSGT00940000154846.a.a.a.b	ENSGT00940000156402.A.a.b.a.b	ENSGT00390000006925	ENSGT00940000155607.mc.b.b	ENSGT00940000156234.a.b.a	ENSGT00940000154713.A.c.b.b	ENSGT00390000012721.b.n #22	ENSGT00950000183055.a.a.h #23	ENSGT00940000159810.e #24	ENSGT00940000160718.f #25	ENSGT00940000158453.a.h #26	ENSGT00940000155821.c.b.b	ENSGT00940000153904.a.h.f	ENSGT00950000182965.b.mb	ENSGT00950000183035.a.b.b.a	ENSGT00950000182803.B.d.b.ib.b	ENSGT00940000162067.l	ENSGT00940000158619.p.l	ENSGT00390000006915.c.c.a.e	ENSGT00390000013608.j	ENSGT00390000016713.h.b	ENSGT00730000111116.a.a
Coho salmon	MODERN SPECIES	25	ENSOKIG00005031118	ENSOKIG00005030980	ENSOKIG00005030967	NCKAP5 (ENSOKIG00005030956)	LYPD1 (ENSOKIG00005030951)	ENSOKIG00005030067	ENSOKIG00005029021	en1b (ENSOKIG00005028929)	C1QL2 (ENSOKIG00005028915)	ENSOKIG00005028895	ENSOKIG00005028885	ENSOKIG00005028866	GABRG3 (ENSOKIG00005028801)	GABRA5 (ENSOKIG00005028780)	GABRB3 (ENSOKIG00005028726)	ndfip2 (ENSOKIG00005028667) #22	spry2 (ENSOKIG00005028657) #23	SLITRK1 (ENSOKIG00005050752) #24	ENSOKIG00005050750	slitrk6 (ENSOKIG00005050749) #25	SLITRK5 (ENSOKIG00005050745) #26	MID1 (ENSOKIG00005050741)	ARHGAP6 (ENSOKIG00005050732)	MSL3 (ENSOKIG00005050729)	ENSOKIG00005050707	ENSOKIG00005050693	ENSOKIG00005050691	RAB9A (ENSOKIG00005050689)	gpm6ba (ENSOKIG00005050687)	GEMIN8 (ENSOKIG00005050681)	ENSOKIG00005050677
Chinook salmon	MODERN SPECIES	31	ENSOTSG00005007254	B3GALT1 (ENSOTSG00005007286)	ENSOTSG00005007287	ENSOTSG00005007288	ENSOTSG00005007290	scn1lab (ENSOTSG00005007291)	ENSOTSG00005007292	STEAP3 (ENSOTSG00005007293)	DBI (ENSOTSG00005007296)	ENSOTSG00005007301	ENSOTSG00005007304	ENSOTSG00005007305	GABRG3 (ENSOTSG00005007306)	GABRA5 (ENSOTSG00005007308)	GABRB3 (ENSOTSG00005007309)	ndfip2 (ENSOTSG00005007312) #22	spry2 (ENSOTSG00005007315) #23	SLITRK1 (ENSOTSG00005007316) #24	slitrk6 (ENSOTSG00005007317) #25	SLITRK5 (ENSOTSG00005007319) #26	MID1 (ENSOTSG00005007320)	ENSOTSG00005007380	MSL3 (ENSOTSG00005007381)	ENSOTSG00005007404	PRPS2 (ENSOTSG00005007410)	ENSOTSG00005007444	rab9a (ENSOTSG00005007446)	ENSOTSG00005007450	gemin8 (ENSOTSG00005007452)	MOSPD2 (ENSOTSG00005007454)	psmd14 (ENSOTSG00005007457)
Rainbow trout	MODERN SPECIES	28	ENSOMYG00000066186	ENSOMYG00000013984	ENSOMYG00000013923	ENSOMYG00000055245	ENSOMYG00000046679	ENSOMYG00000046559	EN1 (ENSOMYG00000046484)	C1QL2 (ENSOMYG00000046476)	STEAP3 (ENSOMYG00000046463)	DBI (ENSOMYG00000057161)	ENSOMYG00000046453	ENSOMYG00000046439	GABRG3 (ENSOMYG00000046430)	ENSOMYG00000046418	GABRB3 (ENSOMYG00000046384)	ndfip2 (ENSOMYG00000051073) #22	ENSOMYG00000060485	SPRY2 (ENSOMYG00000046378) #23	ENSOMYG00000063954	SLITRK1 (ENSOMYG00000068410) #24	slitrk6 (ENSOMYG00000046373) #25	SLITRK5 (ENSOMYG00000046368) #26	MID1 (ENSOMYG00000046358)	ARHGAP6 (ENSOMYG00000046347)	MSL3 (ENSOMYG00000046329)	ENSOMYG00000046306	PRPS2 (ENSOMYG00000046290)	ENSOMYG00000046284	ENSOMYG00000046283	ENSOMYG00000046281	ENSOMYG00000046267
Salmo	ANCESTRAL SPECIES	41	ENSGT00940000158398.j	ENSGT00390000003114.e.b.a.e.b	ENSGT00530000063607.b.j.b.b	ENSGT00390000002215.i.b.a.a	ENSGT00940000155065.`c.b.a	ENSGT00940000154657.A.d.a	ENSGT00940000160811.d.b	ENSGT00940000156913.b.j.a.a	ENSGT00390000008042.A.b.d.d	ENSGT00940000154846.a.a.b	ENSGT00940000156402.A.a.b.b	ENSGT00390000006925	ENSGT00940000155607.mc.b.b	ENSGT00940000156234.a.b.a	ENSGT00940000154713.A.c.b.b	ENSGT00390000012721.b.n #22	ENSGT00950000183055.a.a.h #23	ENSGT00940000159810.e #24	ENSGT00940000160718.f #25	ENSGT00940000158453.a.h #26	ENSGT00940000155821.c.b.b	ENSGT00940000153904.a.h.f	ENSGT00950000182965.b.mb	ENSGT00950000183035.a.b.b.a	ENSGT00950000182803.B.d.b.ib.b	ENSGT01060000249008	ENSGT00940000162067.l	ENSGT00940000158619.p.l	ENSGT00390000006915.c.c.a.e	ENSGT00390000013608.j	ENSGT00390000016713.h.b
Atlantic salmon	MODERN SPECIES	8	ENSSSAG00000055395	ENSSSAG00000055421	ENSSSAG00000102032	ENSSSAG00000055530	EN1 (ENSSSAG00000087049)	ENSSSAG00000055554	C1QL2 (ENSSSAG00000055556)	STEAP3 (ENSSSAG00000055567)	ENSSSAG00000106812	ENSSSAG00000096172	ENSSSAG00000113164	cfap221 (ENSSSAG00000055630)	ENSSSAG00000055654	ENSSSAG00000093479	GABRA5 (ENSSSAG00000037635)	ndfip2 (ENSSSAG00000113560) #22	SPRY2 (ENSSSAG00000110085) #23	SLITRK1 (ENSSSAG00000101613) #24	slitrk6 (ENSSSAG00000055759) #25	SLITRK5 (ENSSSAG00000121218) #26	MID1 (ENSSSAG00000055772)	ARHGAP6 (ENSSSAG00000055789)	MSL3 (ENSSSAG00000103453)	ENSSSAG00000119073	ENSSSAG00000108775	ENSSSAG00000097619	ENSSSAG00000104645	ENSSSAG00000056130	ENSSSAG00000056132	psde (ENSSSAG00000056135)	ENSSSAG00000056145
River trout	MODERN SPECIES	32	gpd1c (ENSSTUG00000040693)	NCKAP5 (ENSSTUG00000040471)	LYPD1 (ENSSTUG00000040458)	ACTR3 (ENSSTUG00000039922)	ENSSTUG00000039815	en1b (ENSSTUG00000039800)	C1QL2 (ENSSTUG00000039793)	STEAP3 (ENSSTUG00000039770)	ENSSTUG00000039767	DBI (ENSSTUG00000039749)	ENSSTUG00000039739	ENSSTUG00000039718	GABRG3 (ENSSTUG00000039629)	GABRA5 (ENSSTUG00000039620)	GABRB3 (ENSSTUG00000039592)	ndfip2 (ENSSTUG00000039560) #22	spry2 (ENSSTUG00000039552) #23	ENSSTUG00000039547	SLITRK1 (ENSSTUG00000039540) #24	slitrk6 (ENSSTUG00000039536) #25	SLITRK5 (ENSSTUG00000039531) #26	MID1 (ENSSTUG00000039516)	ARHGAP6 (ENSSTUG00000039415)	MSL3 (ENSSTUG00000039325)	ENSSTUG00000039028	PRPS2 (ENSSTUG00000039000)	ENSSTUG00000038997	ENSSTUG00000038995	rab9a (ENSSTUG00000051140)	gpm6ba (ENSSTUG00000051139)	gemin8 (ENSSTUG00000051138)
Huchen	MODERN SPECIES	620						en1b (ENSHHUG00000039733)	ENSHHUG00000039728	C1QL2 (ENSHHUG00000039715)	STEAP3 (ENSHHUG00000039702)	ENSHHUG00000039691	ENSHHUG00000039677	ENSHHUG00000039659	GABRG3 (ENSHHUG00000039631)	GABRA5 (ENSHHUG00000039606)	GABRB3 (ENSHHUG00000039575)	NDFIP2 (ENSHHUG00000039570) #22	spry2 (ENSHHUG00000039566) #23
Northern pike	MODERN SPECIES	21	gpd1c (ENSELUG00000020097)	NCKAP5 (ENSELUG00000020214)	LYPD1 (ENSELUG00000020286)	ENSELUG00000020305	ENSELUG00000020446	en1b (ENSELUG00000020464)	C1QL2 (ENSELUG00000020473)	STEAP3 (ENSELUG00000020486)	DBI (ENSELUG00000020520)	ENSELUG00000020562	ENSELUG00000033577	ENSELUG00000020624	GABRG3 (ENSELUG00000020670)	GABRA5 (ENSELUG00000020706)	GABRB3 (ENSELUG00000020729)	ndfip2 (ENSELUG00000028282) #22	spry2 (ENSELUG00000020786) #23	SLITRK1 (ENSELUG00000034451) #24	slitrk6 (ENSELUG00000027650) #25	SLITRK5 (ENSELUG00000027656) #26	MID1 (ENSELUG00000020888)	ARHGAP6 (ENSELUG00000020979)	MSL3 (ENSELUG00000021078)	ENSELUG00000021124	PRPS2 (ENSELUG00000021138)	tmsb4x (ENSELUG00000021146)	TCEANC (ENSELUG00000021159)	rab9a (ENSELUG00000021199)	gpm6ba (ENSELUG00000021213)	gemin8 (ENSELUG00000021226)	MOSPD2 (ENSELUG00000021237)
Acanthomorphata	ANCESTRAL SPECIES	87					ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a	ENSGT00940000173761	ENSGT00940000160618	ENSGT00390000006925	ENSGT00940000155607.mc.b	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT01090000260076.b.b.a	ENSGT00390000015719.d.c	ENSGT00940000155600.a.a.h	ENSGT01060000248589.C.g.b	ENSGT00940000155600.b	ENSGT00960000190231	ENSGT00940000154517.nb
Euacanthomorphacea	ANCESTRAL SPECIES	49	ENSGT01030000234996	ENSGT00390000014037.d	ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a	ENSGT00940000173761	ENSGT00940000178790	ENSGT00940000165152	ENSGT00940000160618	ENSGT00390000006925	ENSGT00940000155607.mc.b	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT01090000260076.b.b.a	ENSGT00390000015719.d.c	ENSGT01060000248589.C.g.b	ENSGT00940000155600.a.a.h
Percomorphaceae	ANCESTRAL SPECIES	22	ENSGT00940000154242.a.c	ENSGT01030000234996	ENSGT00390000014037.d	ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a	ENSGT00940000165152	ENSGT00940000178790	ENSGT00940000160618	ENSGT00390000006925	ENSGT00940000155607.mc.b	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT01090000260076.b.b.a	ENSGT00390000015719.d.c	ENSGT00940000155600.a.a.h	ENSGT01060000248589.C.g.b	ENSGT00390000013877	ENSGT00940000154517.nb	ENSGT00940000166518
Tiger tail seahorse	MODERN SPECIES	221						en1a (ENSHCOG00000010172)	C1QL2 (ENSHCOG00000010155)	STEAP3 (ENSHCOG00000010146)	DBI (ENSHCOG00000010133)	ENSHCOG00000010110	ENSHCOG00000010041	ENSHCOG00000010010	GABRG3 (ENSHCOG00000009977)	GABRA5 (ENSHCOG00000009780)	GABRB3 (ENSHCOG00000009756)	ndfip2 (ENSHCOG00000000301) #22	spry2 (ENSHCOG00000000694) #23
Percomorphaceae_B	ANCESTRAL SPECIES	22	ENSGT01030000234996	ENSGT00390000014037.d	ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a	ENSGT00940000173761	ENSGT00940000178790	ENSGT00940000165152	ENSGT00940000160618	ENSGT00390000006925	ENSGT00940000155607.mc.b	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT00530000064962	ENSGT01090000260076.b.b.a	ENSGT00390000015719.d.c	ENSGT00940000155600.a.a.h	ENSGT01060000248589.C.g.b	ENSGT00390000013877	ENSGT00940000154517.nb
Ovalentaria	ANCESTRAL SPECIES	23	ENSGT01070000253766.C.o.b	ENSGT00390000005345	ENSGT00940000175432	ENSGT00940000154242.a.c	ENSGT01030000234996	ENSGT00390000014037.d	ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a	ENSGT00940000165152	ENSGT00940000155607.mc.b	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT01090000260076.b.b.a	ENSGT00390000015719.d.c	ENSGT00940000155600.a.a.h	ENSGT01060000248589.C.g.b	ENSGT00390000013877	ENSGT00940000154517.nb	ENSGT00940000166518
Atherinomorphae	ANCESTRAL SPECIES	24	ENSGT00940000156406.a	ENSGT00940000158831	ENSGT01070000253766.C.o.b	ENSGT00390000005345	ENSGT00940000154242.a.c	ENSGT00390000014037.d	ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a	ENSGT00940000165152	ENSGT00940000155607.mc.b	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT01090000260076.b.b.a	ENSGT00940000155600.a.a.h	ENSGT01060000248589.C.g.b	ENSGT00390000013877	ENSGT00940000154517.nb	ENSGT00940000166518	ENSGT00940000163827.b
Cyprinodontiformes	ANCESTRAL SPECIES	25	ENSGT00940000156406.a	ENSGT00940000158831	ENSGT01070000253766.C.o.b	ENSGT00390000005345	ENSGT00940000154242.a.c	ENSGT00390000014037.d	ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a	ENSGT00940000165152	ENSGT00940000155607.mc.b	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT01090000260076.b.b.a	ENSGT00940000155600.a.a.h	ENSGT01060000248589.C.g.b	ENSGT00390000013877	ENSGT00940000154517.nb	ENSGT00940000166518	ENSGT00940000163827.b
Cyprinodontoidei	ANCESTRAL SPECIES	26	ENSGT00940000153470.a.a.a.a	ENSGT00940000156406.a	ENSGT00940000158831	ENSGT01070000253766.C.o.b	ENSGT00390000005345	ENSGT00940000154242.a.c	ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a	ENSGT00940000165152	ENSGT00940000155607.mc.b	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT01090000260076.b.b.a	ENSGT00940000155600.a.a.h	ENSGT01060000248589.C.g.b	ENSGT00390000013877	ENSGT00940000154517.nb	ENSGT00940000166518	ENSGT00940000163827.b
NAME_4	ANCESTRAL SPECIES	60	ENSGT00940000153470.a.a.a.a	ENSGT00940000156406.a	ENSGT00940000158831	ENSGT01070000253766.C.o.b	ENSGT00390000005345	ENSGT00940000154242.a.c	ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a	ENSGT00940000165152	ENSGT00940000155607.mc.b	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24
Mummichog	MODERN SPECIES	2292	clic5a (ENSFHEG00000019031)	enpp4 (ENSFHEG00000019047)	ENSFHEG00000019090	ENSFHEG00000019126	ENSFHEG00000019144	en1a (ENSFHEG00000019151)	C1QL2 (ENSFHEG00000019188)	STEAP3 (ENSFHEG00000019204)	DBI (ENSFHEG00000019219)	ENSFHEG00000019226	ENSFHEG00000019286	GABRG3 (ENSFHEG00000019318)	GABRA5 (ENSFHEG00000019343)	GABRB3 (ENSFHEG00000019369)	ENSFHEG00000019394	ndfip2 (ENSFHEG00000019418) #22	spry2 (ENSFHEG00000019422) #23	SLITRK1 (ENSFHEG00000000780) #24
Sheepshead minnow	MODERN SPECIES	1235													ENSCVAG00000017845	GABRA5 (ENSCVAG00000017825)	GABRB3 (ENSCVAG00000017777)	ndfip2 (ENSCVAG00000017742) #22
Poeciliinae	ANCESTRAL SPECIES	23	ENSGT00940000153470.a.a.a.a	ENSGT00940000156406.a	ENSGT00940000158831	ENSGT01070000253766.C.o.b	ENSGT00390000005345	ENSGT00940000154242.a.c	ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a	ENSGT00940000165152	ENSGT00940000155607.mc.b	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT01090000260076.b.b.a	ENSGT00940000155600.a.a.h	ENSGT01060000248589.C.g.b	ENSGT00390000013877	ENSGT00940000154517.nb	ENSGT00940000166518	ENSGT00940000163827.b
Poecilia	ANCESTRAL SPECIES	30	ENSGT00940000153470.a.a.a.a	ENSGT00940000156406.a	ENSGT00940000158831	ENSGT01070000253766.C.o.b	ENSGT00390000005345	ENSGT00940000154242.a.c	ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a	ENSGT00940000165152	ENSGT00940000155607.mc.b	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT01090000260076.b.b.a	ENSGT00940000155600.a.a.h	ENSGT01060000248589.C.g.b	ENSGT00390000013877	ENSGT00940000154517.nb	ENSGT00940000166518	ENSGT00940000163827.b
NAME_6	ANCESTRAL SPECIES	185	ENSGT00940000153470.a.a.a.a	ENSGT00940000156406.a	ENSGT00940000158831	ENSGT01070000253766.C.o.b	ENSGT00390000005345	ENSGT00940000154242.a.c	ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a	ENSGT00940000178790	ENSGT00940000155607.mc.b	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT00530000064962
Sailfin molly	MODERN SPECIES	194						ENSPLAG00000004295	en1a (ENSPLAG00000004285)	C1QL2 (ENSPLAG00000004271)	STEAP3 (ENSPLAG00000004245)	ENSPLAG00000004231	DBI (ENSPLAG00000004195)	ENSPLAG00000004186	GABRG3 (ENSPLAG00000004171)	ENSPLAG00000004150	GABRB3 (ENSPLAG00000004131)	ndfip2 (ENSPLAG00000004113) #22	spry2 (ENSPLAG00000004091) #23
Amazon molly	MODERN SPECIES	334	TMEM163 (ENSPFOG00000015387)	mgat5 (ENSPFOG00000015476)	clic5a (ENSPFOG00000015587)	enpp4 (ENSPFOG00000015598)	XKR6 (ENSPFOG00000015618)	ENSPFOG00000015634	ENSPFOG00000015703	EN1 (ENSPFOG00000015708)	C1QL2 (ENSPFOG00000015710)	STEAP3 (ENSPFOG00000015718)	ENSPFOG00000015743	ENSPFOG00000015844	GABRG3 (ENSPFOG00000015891)	ENSPFOG00000015947	GABRB3 (ENSPFOG00000016053)	ndfip2 (ENSPFOG00000016153) #22	spry2 (ENSPFOG00000020833) #23	SLITRK1 (ENSPFOG00000020834) #24	slitrk6 (ENSPFOG00000016186) #25	SLITRK5 (ENSPFOG00000016197) #26	MID1 (ENSPFOG00000016216)	ARHGAP6 (ENSPFOG00000016277)	MSL3 (ENSPFOG00000016323)	ENSPFOG00000016352	ENSPFOG00000016444
Guppy	MODERN SPECIES	450	mgat5 (ENSPREG00000008251)	clic5a (ENSPREG00000008327)	enpp4 (ENSPREG00000008345)	XKR6 (ENSPREG00000008364)	ENSPREG00000008395	ENSPREG00000008463	EN1 (ENSPREG00000008500)	C1QL2 (ENSPREG00000008506)	STEAP3 (ENSPREG00000008519)	DBI (ENSPREG00000008543)	ENSPREG00000008609	ENSPREG00000008645	GABRG3 (ENSPREG00000008733)	GABRA5 (ENSPREG00000008802)	GABRB3 (ENSPREG00000008839)	ndfip2 (ENSPREG00000008872) #22	spry2 (ENSPREG00000008882) #23	SLITRK1 (ENSPREG00000008887) #24	SLITRK5 (ENSPREG00000008897) #26	MID1 (ENSPREG00000008917)	ARHGAP6 (ENSPREG00000008968)	MSL3 (ENSPREG00000009008)	ENSPREG00000009060	il1rapl1b (ENSPREG00000009181)	caskb (ENSPREG00000009260)	GPR34 (ENSPREG00000009388)	cenpl (ENSPREG00000009394)	FUNDC1 (ENSPREG00000009446)	kdm6al (ENSPREG00000009630)	ENSPREG00000009738	ADAMTS5 (ENSPREG00000009792)
Platyfish	MODERN SPECIES	16	mgat5 (ENSXMAG00000007846)	clic5a (ENSXMAG00000007839)	enpp4 (ENSXMAG00000007831)	ENSXMAG00000007823	ENSXMAG00000007815	ENSXMAG00000007812	EN1 (ENSXMAG00000023001)	C1QL2 (ENSXMAG00000022253)	STEAP3 (ENSXMAG00000004127)	DBI (ENSXMAG00000025676)	ENSXMAG00000004137	ENSXMAG00000024278	GABRG3 (ENSXMAG00000004187)	GABRA5 (ENSXMAG00000004208)	GABRB3 (ENSXMAG00000029545)	ndfip2 (ENSXMAG00000029014) #22	spry2 (ENSXMAG00000021458) #23	SLITRK1 (ENSXMAG00000019723) #24	slitrk6 (ENSXMAG00000025172) #25	SLITRK5 (ENSXMAG00000020149) #26	MID1 (ENSXMAG00000024712)	ARHGAP6 (ENSXMAG00000009034)	MSL3 (ENSXMAG00000009066)	ENSXMAG00000024019	il1rapl1b (ENSXMAG00000009090)	GPR34 (ENSXMAG00000020283)	caskb (ENSXMAG00000006830)	cenpl (ENSXMAG00000001139)	FUNDC1 (ENSXMAG00000028131)	kdm6al (ENSXMAG00000001152)	ENSXMAG00000009098
Aplocheiloidei	ANCESTRAL SPECIES	37	ENSGT00390000001170.a.b	ENSGT00940000153470.a.a.a.a	ENSGT00940000156406.a	ENSGT00940000158831	ENSGT01070000253766.C.o.b	ENSGT00390000005345	ENSGT00940000154242.a.c	ENSGT00390000014037.d	ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000156402.A.a	ENSGT00940000155607.mc.b	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT01090000260076.b.b.a	ENSGT00940000155600.a.a.h	ENSGT01060000248589.C.g.b	ENSGT00390000013877	ENSGT00940000154517.nb	ENSGT00940000166518	ENSGT00940000163827.b
Mangrove rivulus	MODERN SPECIES	449											ENSKMAG00000014932	ctns (ENSKMAG00000014946)	ENSKMAG00000014980	GABRA5 (ENSKMAG00000014994)	GABRB3 (ENSKMAG00000015036)	ndfip2 (ENSKMAG00000015093) #22	spry2 (ENSKMAG00000015111) #23
Oryzias	ANCESTRAL SPECIES	26	ENSGT00940000153470.a.a.a.a	ENSGT00940000156406.a	ENSGT00940000158831	ENSGT01070000253766.C.o.b	ENSGT00390000005345	ENSGT00940000154242.a.c	ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a	ENSGT00940000165152	ENSGT00940000155607.mc.b	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT01090000260076.b.b.a	ENSGT00940000155600.a.a.h	ENSGT01060000248589.C.g.b	ENSGT00390000013877	ENSGT00940000154517.nb	ENSGT00940000166518	ENSGT00940000163827.b
Oryzias_b	ANCESTRAL SPECIES	24	ENSGT00940000153470.a.a.a.a	ENSGT00940000156406.a	ENSGT00940000158831	ENSGT01070000253766.C.o.b	ENSGT00390000005345	ENSGT00940000154242.a.c	ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a	ENSGT00940000165152	ENSGT00940000155607.mc.b	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT01090000260076.b.b.a	ENSGT00940000155600.a.a.h	ENSGT01060000248589.C.g.b	ENSGT00390000013877	ENSGT00940000154517.nb	ENSGT00940000166518
Javanese ricefish	MODERN SPECIES	11	mgat5 (ENSOJAG00000000895)	clic5a (ENSOJAG00000000902)	enpp4 (ENSOJAG00000000907)	ENSOJAG00000000914	ENSOJAG00000000917	ENSOJAG00000000934	en1a (ENSOJAG00000000941)	C1QL2 (ENSOJAG00000000951)	STEAP3 (ENSOJAG00000000961)	DBI (ENSOJAG00000000968)	ENSOJAG00000000990	ENSOJAG00000001023	GABRG3 (ENSOJAG00000001042)	GABRA5 (ENSOJAG00000001069)	GABRB3 (ENSOJAG00000001089)	ndfip2 (ENSOJAG00000001096) #22	spry2 (ENSOJAG00000001100) #23	SLITRK1 (ENSOJAG00000001105) #24	ENSOJAG00000001109	slitrk6 (ENSOJAG00000001111) #25	SLITRK5 (ENSOJAG00000001115) #26	MID1 (ENSOJAG00000001140)	ARHGAP6 (ENSOJAG00000001199)	ENSOJAG00000001216	MSL3 (ENSOJAG00000001221)	ENSOJAG00000001250	il1rapl1b (ENSOJAG00000001284)	caskb (ENSOJAG00000001306)	GPR34 (ENSOJAG00000001339)	cenpl (ENSOJAG00000001345)	FUNDC1 (ENSOJAG00000001354)
Indian medaka	MODERN SPECIES	24	mgat5 (ENSOMEG00000004049)	clic5a (ENSOMEG00000004076)	enpp4 (ENSOMEG00000004100)	XKR6 (ENSOMEG00000004104)	ENSOMEG00000000847	ENSOMEG00000004779	en1a (ENSOMEG00000004805)	C1QL2 (ENSOMEG00000004821)	STEAP3 (ENSOMEG00000004840)	DBI (ENSOMEG00000004864)	ENSOMEG00000004921	ENSOMEG00000004938	GABRG3 (ENSOMEG00000004966)	GABRA5 (ENSOMEG00000004993)	GABRB3 (ENSOMEG00000000110)	ndfip2 (ENSOMEG00000005087) #22	spry2 (ENSOMEG00000005112) #23	SLITRK1 (ENSOMEG00000005123) #24	ENSOMEG00000005125	slitrk6 (ENSOMEG00000005133) #25	ENSOMEG00000005142	SLITRK5 (ENSOMEG00000005150) #26	MID1 (ENSOMEG00000005159)	ARHGAP6 (ENSOMEG00000005211)	MSL3 (ENSOMEG00000005256)	ENSOMEG00000005324	il1rapl1b (ENSOMEG00000005393)	GPR34 (ENSOMEG00000005418)	caskb (ENSOMEG00000005650)	cenpl (ENSOMEG00000005689)	FUNDC1 (ENSOMEG00000005715)
Oryzias_a	ANCESTRAL SPECIES	28	ENSGT00940000153470.a.a.a.a	ENSGT00940000156406.a	ENSGT00940000158831	ENSGT01070000253766.C.o.b	ENSGT00390000005345	ENSGT00940000154242.a.c	ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a	ENSGT00940000165152	ENSGT00940000155607.mc.b	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h.d	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT01090000260076.b.b.a	ENSGT00940000155600.a.a.h	ENSGT01060000248589.C.g.b	ENSGT00390000013877	ENSGT00940000154517.nb	ENSGT00940000166518	ENSGT00940000163827.b
Japanese Medaka HdrR	MODERN SPECIES	11	ENSORLG00000004371	enpp4 (ENSORLG00000004391)	ENSORLG00000004398	ENSORLG00000004413	ENSORLG00000025838	ENSORLG00000024509	en1a (ENSORLG00000020825)	C1QL2 (ENSORLG00000027553)	STEAP3 (ENSORLG00000004437)	ENSORLG00000004467	ENSORLG00000027090	ENSORLG00000023767	GABRG3 (ENSORLG00000004478)	ENSORLG00000004511	GABRB3 (ENSORLG00000004540)	ndfip2 (ENSORLG00000004591) #22	spry2 (ENSORLG00000004598) #23	ENSORLG00000028064	ENSORLG00000026329	SLITRK1 (ENSORLG00000004606) #24	ENSORLG00000027935	ENSORLG00000025146	slitrk6 (ENSORLG00000004618) #25	SLITRK5 (ENSORLG00000004630) #26	ENSORLG00000022451	MID1 (ENSORLG00000004661)	ENSORLG00000004681	ENSORLG00000029691	MSL3 (ENSORLG00000004698)	ENSORLG00000004705	ENSORLG00000004714
Chinese medaka	MODERN SPECIES	851		clic5a (ENSOSIG00000002528)	enpp4 (ENSOSIG00000002537)	XKR6 (ENSOSIG00000002550)	ENSOSIG00000002560	ENSOSIG00000002566	ENSOSIG00000002570	en1a (ENSOSIG00000002577)	C1QL2 (ENSOSIG00000002581)	STEAP3 (ENSOSIG00000002589)	DBI (ENSOSIG00000002596)	ENSOSIG00000002618	ENSOSIG00000002643	GABRG3 (ENSOSIG00000002674)	ENSOSIG00000003118	ndfip2 (ENSOSIG00000003128) #22	spry2 (ENSOSIG00000003133) #23	SLITRK1 (ENSOSIG00000003140) #24	slitrk6 (ENSOSIG00000003146) #25	MID1 (ENSOSIG00000003183)
Ovalentaria_B	ANCESTRAL SPECIES	22	ENSGT01070000253766.C.o.b	ENSGT00390000005345	ENSGT00940000154242.a.c	ENSGT01030000234996	ENSGT00390000014037.d	ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a	ENSGT00940000165152	ENSGT00390000006925	ENSGT00940000155607.mc.b	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT01090000260076.b.b.a	ENSGT00390000015719.d.c	ENSGT00940000155600.a.a.h	ENSGT01060000248589.C.g.b	ENSGT00390000013877	ENSGT00940000154517.nb	ENSGT00940000166518
Cichlidae	ANCESTRAL SPECIES	30	ENSGT00940000158831	ENSGT01070000253766.C.o.b	ENSGT00390000005345	ENSGT00940000154242.a.c	ENSGT01030000234996	ENSGT00390000014037.d	ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a	ENSGT00940000165152	ENSGT00940000155607.mc.b	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT01090000260076.b.b.a	ENSGT00390000015719.d.c	ENSGT00940000155600.a.a.h	ENSGT01060000248589.C.g.b	ENSGT00390000013877	ENSGT00940000154517.nb	ENSGT00940000166518
Pseudocrenilabrinae	ANCESTRAL SPECIES	25	ENSGT00940000158831	ENSGT01070000253766.C.o.b	ENSGT00390000005345	ENSGT00940000154242.a.c	ENSGT01030000234996	ENSGT00390000014037.d	ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a	ENSGT00390000006925	ENSGT00940000155607.mc.b	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000181681	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT01090000260076.b.b.a	ENSGT00390000015719.d.c	ENSGT00940000155600.a.a.h	ENSGT01060000248589.C.g.b	ENSGT00390000013877	ENSGT00940000154517.nb
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	29	ENSGT00390000005345	ENSGT00940000154242.a.c.i	ENSGT00940000154242.a.c.j	ENSGT01030000234996	ENSGT00390000014037.d	ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a	ENSGT00940000165152	ENSGT00390000006925	ENSGT00940000155607.mc.b	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000181681	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT01090000260076.b.b.a	ENSGT00390000015719.d.c	ENSGT00940000155600.a.a.h	ENSGT01060000248589.C.g.b	ENSGT00390000013877	ENSGT00940000154517.nb
Haplochromini	ANCESTRAL SPECIES	26	ENSGT00390000005345	ENSGT00940000154242.a.c.i	ENSGT00940000154242.a.c.j	ENSGT01030000234996	ENSGT00390000014037.d	ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a	ENSGT00940000165152	ENSGT00390000006925	ENSGT00940000155607.mc.b.j	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT01090000260076.b.b.a	ENSGT00390000015719.d.c	ENSGT00940000155600.a.a.h	ENSGT01060000248589.C.g.b	ENSGT00390000013877	ENSGT00940000154517.nb	ENSGT00940000166518
Haplochromini_A	ANCESTRAL SPECIES	29	ENSGT01070000253766.C.o.b	ENSGT00390000005345	ENSGT00940000154242.a.c.i	ENSGT00940000154242.a.c.j	ENSGT01030000234996	ENSGT00390000014037.d	ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a	ENSGT00940000165152	ENSGT00940000155607.mc.b.j	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT01090000260076.b.b.a	ENSGT00390000015719.d.c	ENSGT00940000155600.a.a.h	ENSGT01060000248589.C.g.b	ENSGT00390000013877	ENSGT00940000154517.nb	ENSGT00940000166518
Haplochromini_B	ANCESTRAL SPECIES	38	ENSGT00390000005345	ENSGT00940000154242.a.c.i	ENSGT00940000154242.a.c.j	ENSGT01030000234996	ENSGT00390000014037.d	ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a	ENSGT00940000165152	ENSGT00390000006925	ENSGT00940000155607.mc.b.j	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT01030000234522.C.c.a.b.f	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000180640	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT01090000260076.b.b.a	ENSGT00390000015719.d.c	ENSGT00940000155600.a.a.h	ENSGT01060000248589.C.g.b	ENSGT00390000013877
Zebra mbuna	MODERN SPECIES	1105	ENSMZEG00005003587	ENSMZEG00005003600	ENSMZEG00005003617	ENSMZEG00005003631	ENSMZEG00005003670	ENSMZEG00005003681	en1a (ENSMZEG00005003707)	C1QL2 (ENSMZEG00005003725)	STEAP3 (ENSMZEG00005003771)	DBI (ENSMZEG00005003787)	ENSMZEG00005004455	ENSMZEG00005004483	GABRG3 (ENSMZEG00005004502)	GABRA5 (ENSMZEG00005004532)	GABRB3 (ENSMZEG00005004563)	ndfip2 (ENSMZEG00005004607) #22	spry2 (ENSMZEG00005004629) #23	SLITRK1 (ENSMZEG00005004635) #24	ENSMZEG00005004657	ENSMZEG00005004697	ENSMZEG00005004729	slitrk6 (ENSMZEG00005004752) #25	SLITRK5 (ENSMZEG00005004756) #26	ENSMZEG00005004768	MID1 (ENSMZEG00005004790)	ARHGAP6 (ENSMZEG00005004821)	ENSMZEG00005004836	MSL3 (ENSMZEG00005004848)	ENSMZEG00005004889	ENSMZEG00005004917	il1rapl1b (ENSMZEG00005004943)
Eastern happy	MODERN SPECIES	14	ENSACLG00000027391	ENSACLG00000027399	ENSACLG00000027407	ENSACLG00000027410	EN1 (ENSACLG00000027418)	C1QL2 (ENSACLG00000027425)	STEAP3 (ENSACLG00000027437)	DBI (ENSACLG00000027439)	ENSACLG00000027448	CFAP221 (ENSACLG00000027455)	GABRG3 (ENSACLG00000027489)	ENSACLG00000027508	ENSACLG00000027511	GABRA5 (ENSACLG00000027512)	GABRB3 (ENSACLG00000027518)	ndfip2 (ENSACLG00000027527) #22	spry2 (ENSACLG00000027533) #23	ENSACLG00000027535	ENSACLG00000027537	SLITRK1 (ENSACLG00000027544) #24	ENSACLG00000027551	ENSACLG00000027552	ENSACLG00000027560	slitrk6 (ENSACLG00000027562) #25	SLITRK5 (ENSACLG00000027570) #26	ENSACLG00000027578	ENSACLG00000027581	ENSACLG00000027591	ENSACLG00000027593	ENSACLG00000027597	MID1 (ENSACLG00000027626)
P. nyererei	MODERN SPECIES	389	enpp4 (ENSPNYG00000008351)	XKR6 (ENSPNYG00000008326)	ENSPNYG00000008282	ENSPNYG00000008218	ENSPNYG00000008175	ENSPNYG00000008104	EN1 (ENSPNYG00000008032)	C1QL2 (ENSPNYG00000007956)	STEAP3 (ENSPNYG00000007940)	ENSPNYG00000007922	ENSPNYG00000007882	ENSPNYG00000007856	GABRG3 (ENSPNYG00000007824)	GABRA5 (ENSPNYG00000007798)	GABRB3 (ENSPNYG00000007764)	ndfip2 (ENSPNYG00000007745) #22	spry2 (ENSPNYG00000007710) #23	SLITRK1 (ENSPNYG00000007698) #24
Burton s mouthbrooder	MODERN SPECIES	714																ndfip2 (ENSHBUG00000000607) #22	spry2 (ENSHBUG00000000611) #23	SLITRK1 (ENSHBUG00000020165) #24
Lyretail cichlid	MODERN SPECIES	329	XKR6 (ENSNBRG00000013743)	ENSNBRG00000013695	ENSNBRG00000013684	ENSNBRG00000013667	ENSNBRG00000013642	EN1 (ENSNBRG00000013612)	C1QL2 (ENSNBRG00000013578)	STEAP3 (ENSNBRG00000013568)	ENSNBRG00000013558	ENSNBRG00000013506	ENSNBRG00000013494	ENSNBRG00000013482	GABRG3 (ENSNBRG00000013453)	GABRA5 (ENSNBRG00000013424)	GABRB3 (ENSNBRG00000013275)	ndfip2 (ENSNBRG00000013218) #22	spry2 (ENSNBRG00000013207) #23	SLITRK1 (ENSNBRG00000013203) #24	ENSNBRG00000013185	slitrk6 (ENSNBRG00000013178) #25	SLITRK5 (ENSNBRG00000013170) #26	MID1 (ENSNBRG00000013135)	ARHGAP6 (ENSNBRG00000013101)	MSL3 (ENSNBRG00000013071)	ENSNBRG00000012973	il1rapl1b (ENSNBRG00000012927)	nr0b1 (ENSNBRG00000012918)	GPR34 (ENSNBRG00000012914)	caskb (ENSNBRG00000012860)	cenpl (ENSNBRG00000012839)	FUNDC1 (ENSNBRG00000012825)
Nile tilapia	MODERN SPECIES	14	ENSONIG00000041756	ENSONIG00000026060	ENSONIG00000023479	ENSONIG00000012044	EN1 (ENSONIG00000012049)	C1QL2 (ENSONIG00000012050)	STEAP3 (ENSONIG00000012051)	ENSONIG00000032612	ENSONIG00000012054	ENSONIG00000012062	ENSONIG00000030258	GABRG3 (ENSONIG00000012068)	GABRA5 (ENSONIG00000012072)	GABRB3 (ENSONIG00000012081)	ENSONIG00000041013	ndfip2 (ENSONIG00000012088) #22	SLITRK1 (ENSONIG00000021016) #24	ENSONIG00000030977	ENSONIG00000030424	slitrk6 (ENSONIG00000012094) #25	SLITRK5 (ENSONIG00000021017) #26	MID1 (ENSONIG00000012095)	ARHGAP6 (ENSONIG00000012099)	MSL3 (ENSONIG00000012104)	ENSONIG00000029437	ENSONIG00000012105	il1rapl1b (ENSONIG00000012110)	caskb (ENSONIG00000012112)	GPR34 (ENSONIG00000021018)	cenpl (ENSONIG00000012114)	FUNDC1 (ENSONIG00000012115)
Midas cichlid	MODERN SPECIES	353	clic5a (ENSACIG00000018990)	enpp4 (ENSACIG00000019003)	XKR6 (ENSACIG00000019016)	ENSACIG00000019035	ENSACIG00000019060	ENSACIG00000019078	en1a (ENSACIG00000019134)	C1QL2 (ENSACIG00000019137)	STEAP3 (ENSACIG00000019170)	ENSACIG00000019320	DBI (ENSACIG00000019432)	ENSACIG00000019439	GABRG3 (ENSACIG00000019456)	GABRA5 (ENSACIG00000019472)	GABRB3 (ENSACIG00000019489)	ndfip2 (ENSACIG00000019516) #22	spry2 (ENSACIG00000019559) #23	SLITRK1 (ENSACIG00000019586) #24	nqo1 (ENSACIG00000019607)	slitrk6 (ENSACIG00000019617) #25	ENSACIG00000019625	SLITRK5 (ENSACIG00000019633) #26	ENSACIG00000019648	MID1 (ENSACIG00000019657)	ARHGAP6 (ENSACIG00000019676)	MSL3 (ENSACIG00000019703)	ENSACIG00000019755	il1rapl1b (ENSACIG00000019859)	nr0b1 (ENSACIG00000019907)	caskb (ENSACIG00000019914)	GPR34 (ENSACIG00000019955)
Pomacentridae	ANCESTRAL SPECIES	132	ENSGT00940000158831	ENSGT01070000253766.C.o.b	ENSGT00390000005345	ENSGT00940000154242.a.c	ENSGT00390000014037.d	ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a	ENSGT00940000165152	ENSGT00390000006925	ENSGT00940000155607.mc.b	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT01090000260076.b.b.a	ENSGT00390000015719.d.c
Pomacentridae_A	ANCESTRAL SPECIES	107	ENSGT00940000158831	ENSGT01070000253766.C.o.b	ENSGT00390000005345	ENSGT00940000154242.a.c	ENSGT00390000014037.d	ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a	ENSGT00940000165152	ENSGT00390000006925	ENSGT00940000155607.mc.b	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT01090000260076.b.b.a	ENSGT00390000015719.d.c
Amphiprion	ANCESTRAL SPECIES	130	ENSGT00940000156406.a	ENSGT00940000158831	ENSGT01070000253766.C.o.b	ENSGT00390000005345	ENSGT00940000154242.a.c	ENSGT00390000014037.d	ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a	ENSGT00390000006925	ENSGT00940000155607.mc.b	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT01090000260076.b.b.a	ENSGT00390000015719.d.c
Orange clownfish	MODERN SPECIES	16	clic5a (ENSAPEG00000012257)	enpp4 (ENSAPEG00000012288)	XKR6 (ENSAPEG00000012311)	ENSAPEG00000012355	ENSAPEG00000012490	ENSAPEG00000012504	en1a (ENSAPEG00000012557)	C1QL2 (ENSAPEG00000012569)	STEAP3 (ENSAPEG00000012600)	DBI (ENSAPEG00000012645)	ENSAPEG00000012668	CFAP221 (ENSAPEG00000012812)	GABRG3 (ENSAPEG00000012861)	GABRA5 (ENSAPEG00000012894)	GABRB3 (ENSAPEG00000012918)	ndfip2 (ENSAPEG00000012934) #22	spry2 (ENSAPEG00000012947) #23	SLITRK1 (ENSAPEG00000012954) #24	slitrk6 (ENSAPEG00000013006) #25	SLITRK5 (ENSAPEG00000013017) #26	MID1 (ENSAPEG00000013043)	ARHGAP6 (ENSAPEG00000013104)	MSL3 (ENSAPEG00000013147)	ENSAPEG00000013213	ENSAPEG00000013232	il1rapl1b (ENSAPEG00000013428)	nr0b1 (ENSAPEG00000013465)	vamp1a (ENSAPEG00000013482)
Clown anemonefish	MODERN SPECIES	3475																ndfip2 (ENSAOCG00000014804) #22	spry2 (ENSAOCG00000014748) #23	SLITRK1 (ENSAOCG00000000979) #24	slitrk6 (ENSAOCG00000014730) #25	TENM3 (ENSAOCG00000014709)
Spiny chromis	MODERN SPECIES	131													GABRG3 (ENSAPOG00000001215)	GABRA5 (ENSAPOG00000001209)	GABRB3 (ENSAPOG00000001204)	ndfip2 (ENSAPOG00000001200) #22	spry2 (ENSAPOG00000001199) #23	SLITRK1 (ENSAPOG00000001197) #24
Bicolor damselfish	MODERN SPECIES	276																ndfip2 (ENSSPAG00000007775) #22	spry2 (ENSSPAG00000007768) #23	SLITRK1 (ENSSPAG00000007760) #24	ENSSPAG00000007754	slitrk6 (ENSSPAG00000007747) #25	SLITRK5 (ENSSPAG00000007740) #26
Percomorphaceae_C	ANCESTRAL SPECIES	23	ENSGT00940000154242.a.c	ENSGT01030000234996	ENSGT00390000014037.d	ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a	ENSGT00940000178790	ENSGT00940000165152	ENSGT00940000160618	ENSGT00390000006925	ENSGT00940000155607.mc.b	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT00530000064962	ENSGT01090000260076.b.b.a	ENSGT00390000015719.d.c	ENSGT00940000155600.a.a.h	ENSGT01060000248589.C.g.b	ENSGT00390000013877	ENSGT00940000154517.nb
Eupercaria	ANCESTRAL SPECIES	23	ENSGT00390000005345	ENSGT00940000154242.a.c	ENSGT01030000234996	ENSGT00390000014037.d	ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a	ENSGT00940000173761	ENSGT00940000178790	ENSGT00390000006925	ENSGT00940000155607.mc.b	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT00530000064962	ENSGT01090000260076.b.b.a	ENSGT00390000015719.d.c	ENSGT00940000155600.a.a.h	ENSGT01060000248589.C.g.b	ENSGT00390000013877	ENSGT00940000154517.nb
Tetraodontidae	ANCESTRAL SPECIES	22	ENSGT00940000156406.a	ENSGT00940000158831	ENSGT01070000253766.C.o.b	ENSGT00390000005345	ENSGT00940000154242.a.c	ENSGT01030000234996	ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a	ENSGT00940000173761	ENSGT00940000155607.mc.b	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT00530000064962	ENSGT01090000260076.b.b.a	ENSGT00390000015719.d.c	ENSGT01060000248589.C.g.b	ENSGT00940000155600.a.a.h	ENSGT00390000013877	ENSGT00940000154517.nb
Tetraodon	DUPLICATION
Tetraodon	MODERN SPECIES	18	ccnt2b (ENSTNIG00000010364)	TMEM163 (ENSTNIG00000010365)	mgat5 (ENSTNIG00000007007)	clic5a (ENSTNIG00000007008)	enpp4 (ENSTNIG00000014268)	XKR6 (ENSTNIG00000014269)	ENSTNIG00000014270	ENSTNIG00000003013	C1QL2 (ENSTNIG00000019062)	STEAP3 (ENSTNIG00000019061)	DBI (ENSTNIG00000019060)	ENSTNIG00000005583	GABRG3 (ENSTNIG00000014405)	GABRA5 (ENSTNIG00000014404)	GABRB3 (ENSTNIG00000014403)	ndfip2 (ENSTNIG00000014402) #22	spry2 (ENSTNIG00000001350) #23	SLITRK1 (ENSTNIG00000000766) #24	MID1 (ENSTNIG00000014550)	ARHGAP6 (ENSTNIG00000014549)	MSL3 (ENSTNIG00000014548)	ENSTNIG00000014547	ENSTNIG00000000374	il1rapl1b (ENSTNIG00000014546)	caskb (ENSTNIG00000014545)	cenpl (ENSTNIG00000014543)	FUNDC1 (ENSTNIG00000014542)	ENSTNIG00000000999	kdm6al (ENSTNIG00000014541)	ENSTNIG00000014540	ADAMTS5 (ENSTNIG00000014539)
Tetraodon	MODERN SPECIES	26	ENSTNIG00000001479	ENSTNIG00000000415	ENSTNIG00000002317	ENSTNIG00000002319	ENSTNIG00000002320	ctsla (ENSTNIG00000015635)	ENSTNIG00000002322	rgma (ENSTNIG00000000195)	ENSTNIG00000000668	cldnd1a (ENSTNIG00000002325)	ENSTNIG00000002326	ENSTNIG00000000251	ENSTNIG00000002329	ENSTNIG00000002330	ENSTNIG00000002331	ndfip2 (ENSTNIG00000002332) #22	ENSTNIG00000002333	ENSTNIG00000001970	ENSTNIG00000002334	ENSTNIG00000015562	ENSTNIG00000002336	SLC37A4 (ENSTNIG00000002337)	ENSTNIG00000002338	ENSTNIG00000002339	ENSTNIG00000002340	stx1b (ENSTNIG00000002341)	ENSTNIG00000002342	ENSTNIG00000002345	kin (ENSTNIG00000002346)	mrpl28 (ENSTNIG00000002347)	ENSTNIG00000002349
Fugu	MODERN SPECIES	20	clic5a (ENSTRUG00000012502)	enpp4 (ENSTRUG00000012609)	XKR6 (ENSTRUG00000012716)	ENSTRUG00000012817	ENSTRUG00000022709	ENSTRUG00000022159	en1a (ENSTRUG00000012905)	C1QL2 (ENSTRUG00000012932)	STEAP3 (ENSTRUG00000012949)	DBI (ENSTRUG00000029655)	ENSTRUG00000013033	ENSTRUG00000023345	GABRG3 (ENSTRUG00000013130)	GABRA5 (ENSTRUG00000013313)	GABRB3 (ENSTRUG00000013558)	ndfip2 (ENSTRUG00000033076) #22	spry2 (ENSTRUG00000031524) #23	SLITRK1 (ENSTRUG00000013852) #24	slitrk6 (ENSTRUG00000014136) #25	SLITRK5 (ENSTRUG00000014112) #26	MID1 (ENSTRUG00000012760)	ARHGAP6 (ENSTRUG00000012693)	MSL3 (ENSTRUG00000012620)	ENSTRUG00000012514	ENSTRUG00000031052	il1rapl1b (ENSTRUG00000012390)	nr0b1 (ENSTRUG00000012374)	GPR34 (ENSTRUG00000012365)	caskb (ENSTRUG00000011655)	cenpl (ENSTRUG00000011609)	FUNDC1 (ENSTRUG00000011532)
Eupecaria_A	ANCESTRAL SPECIES	23	ENSGT00390000005345	ENSGT00940000154242.a.c	ENSGT01030000234996	ENSGT00390000014037.d	ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a	ENSGT00940000178790	ENSGT00940000165152	ENSGT00390000006925	ENSGT00940000155607.mc.b	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT00530000064962	ENSGT01090000260076.b.b.a	ENSGT00390000015719.d.c	ENSGT00940000155600.a.a.h	ENSGT01060000248589.C.g.b	ENSGT00390000013877	ENSGT00940000154517.nb
Ballan wrasse	MODERN SPECIES	64	lypd6 (ENSLBEG00000004525)	pspc1 (ENSLBEG00000004474)	NBEAL1 (ENSLBEG00000004299)	ENSLBEG00000004249	ENSLBEG00000004204	STRADB (ENSLBEG00000004012)	TRAK2 (ENSLBEG00000003916)	ENSLBEG00000003890	nudt15 (ENSLBEG00000003843)	cpo (ENSLBEG00000003738)	cpo (ENSLBEG00000003654)	ENSLBEG00000003495	GABRG3 (ENSLBEG00000003406)	ENSLBEG00000003336	GABRB3 (ENSLBEG00000003266)	ndfip2 (ENSLBEG00000003231) #22	spry2 (ENSLBEG00000003222) #23	SLITRK1 (ENSLBEG00000003208) #24	slitrk6 (ENSLBEG00000003196) #25	SLITRK5 (ENSLBEG00000003186) #26	MID1 (ENSLBEG00000003145)	ARHGAP6 (ENSLBEG00000003088)
Eupecaria_B	ANCESTRAL SPECIES	23	ENSGT00390000005345	ENSGT00940000154242.a.c	ENSGT01030000234996	ENSGT00390000014037.d	ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a	ENSGT00940000178790	ENSGT00940000165152	ENSGT00390000006925	ENSGT00940000155607.mc.b	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT00530000064962	ENSGT01090000260076.b.b.a	ENSGT00390000015719.d.c	ENSGT00940000155600.a.a.h	ENSGT01060000248589.C.g.b	ENSGT00390000013877	ENSGT00940000154517.nb
Perciformes	ANCESTRAL SPECIES	24	ENSGT00390000005345	ENSGT00940000154242.a.c	ENSGT01030000234996	ENSGT00390000014037.d	ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a	ENSGT00940000173761	ENSGT00940000178790	ENSGT00940000165152	ENSGT00940000155607.mc.b	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT00530000064962	ENSGT01090000260076.b.b.a	ENSGT00390000015719.d.c	ENSGT00940000155600.a.a.h	ENSGT01060000248589.C.g.b	ENSGT00390000013877	ENSGT00940000154517.nb
Perciformes_a	ANCESTRAL SPECIES	25	ENSGT01070000253766.C.o.b	ENSGT00390000005345	ENSGT00940000154242.a.c	ENSGT01030000234996	ENSGT00390000014037.d	ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a	ENSGT00940000178790	ENSGT00940000165152	ENSGT00940000155607.mc.b	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT01090000260076.b.b.a	ENSGT00390000015719.d.c	ENSGT00940000155600.a.a.h	ENSGT01060000248589.C.g.b	ENSGT00390000013877	ENSGT00940000154517.nb	ENSGT00940000166518
Channel bull blenny	MODERN SPECIES	11	mgat5 (ENSCGOG00000003235)	clic5a (ENSCGOG00000003218)	enpp4 (ENSCGOG00000003211)	XKR6 (ENSCGOG00000003206)	ENSCGOG00000003204	ENSCGOG00000003197	ENSCGOG00000003183	EN1 (ENSCGOG00000003179)	STEAP3 (ENSCGOG00000003170)	ENSCGOG00000003071	ENSCGOG00000003040	ENSCGOG00000003026	GABRG3 (ENSCGOG00000003010)	GABRA5 (ENSCGOG00000002675)	GABRB3 (ENSCGOG00000024682)	ndfip2 (ENSCGOG00000024681) #22	SLITRK1 (ENSCGOG00000024679) #24	spry2 (ENSCGOG00000024678) #23	slitrk6 (ENSCGOG00000024676) #25	SLITRK5 (ENSCGOG00000024675) #26	MID1 (ENSCGOG00000024673)	ARHGAP6 (ENSCGOG00000024672)	MSL3 (ENSCGOG00000024671)	ENSCGOG00000024670	ENSCGOG00000024669	ENSCGOG00000024667	il1rapl1b (ENSCGOG00000024666)	nr0b1 (ENSCGOG00000024664)	GPR34 (ENSCGOG00000024663)	CASK (ENSCGOG00000024553)	cenpl (ENSCGOG00000024535)
Pike perch	MODERN SPECIES	9	XKR6 (ENSSLUG00000025643)	ENSSLUG00000025638	ENSSLUG00000025637	ENSSLUG00000025634	ENSSLUG00000025630	EN1 (ENSSLUG00000025626)	C1QL2 (ENSSLUG00000025623)	STEAP3 (ENSSLUG00000025618)	DBI (ENSSLUG00000025615)	SCTR (ENSSLUG00000025611)	ENSSLUG00000025607	ENSSLUG00000025603	GABRG3 (ENSSLUG00000025578)	GABRA5 (ENSSLUG00000025558)	GABRB3 (ENSSLUG00000025549)	ndfip2 (ENSSLUG00000025546) #22	spry2 (ENSSLUG00000025545) #23	SLITRK1 (ENSSLUG00000025544) #24	ENSSLUG00000025543	SLITRK5 (ENSSLUG00000025541) #26	MID1 (ENSSLUG00000025533)	ARHGAP6 (ENSSLUG00000025476)	ENSSLUG00000025463	MSL3 (ENSSLUG00000025460)	ENSSLUG00000025457	il1rapl1b (ENSSLUG00000025455)	ENSSLUG00000025451	GPR34 (ENSSLUG00000025449)	caskb (ENSSLUG00000025423)	cenpl (ENSSLUG00000025397)	FUNDC1 (ENSSLUG00000025394)
Cottioidei	ANCESTRAL SPECIES	24	ENSGT00940000158831	ENSGT01070000253766.C.o.b	ENSGT00390000005345	ENSGT00940000154242.a.c	ENSGT01030000234996	ENSGT00390000014037.d	ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a	ENSGT00940000173761	ENSGT00940000155607.mc.b	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT00530000064962	ENSGT01090000260076.b.b.a	ENSGT00940000155600.a.a.h	ENSGT01060000248589.C.g.b	ENSGT00390000013877	ENSGT00940000154517.nb	ENSGT00940000166518
Lumpfish	MODERN SPECIES	11	enpp4 (ENSCLMG00005003629)	XKR6 (ENSCLMG00005003630)	ENSCLMG00005003653	ENSCLMG00005003655	ENSCLMG00005003656	ENSCLMG00005003657	en1a (ENSCLMG00005003658)	C1QL2 (ENSCLMG00005003659)	STEAP3 (ENSCLMG00005003660)	DBI (ENSCLMG00005003661)	ENSCLMG00005003664	ENSCLMG00005003671	GABRG3 (ENSCLMG00005003675)	GABRA5 (ENSCLMG00005003947)	GABRB3 (ENSCLMG00005003953)	ndfip2 (ENSCLMG00005003956) #22	spry2 (ENSCLMG00005003958) #23	SLITRK1 (ENSCLMG00005003959) #24	slitrk6 (ENSCLMG00005003960) #25	SLITRK5 (ENSCLMG00005003961) #26	MID1 (ENSCLMG00005003963)	ENSCLMG00005003967	ARHGAP6 (ENSCLMG00005003971)	MSL3 (ENSCLMG00005004121)	ENSCLMG00005004129	ENSCLMG00005004141	caskb (ENSCLMG00005004159)	GPR34 (ENSCLMG00005004536)	cenpl (ENSCLMG00005004545)	FUNDC1 (ENSCLMG00005004563)	kdm6al (ENSCLMG00005004832)
Stickleback	MODERN SPECIES		mgat5 (ENSGACG00000014934)	clic5a (ENSGACG00000014937)	enpp4 (ENSGACG00000014941)	ENSGACG00000014946	ENSGACG00000014949	ENSGACG00000014950	ENSGACG00000014951	EN1 (ENSGACG00000014956)	C1QL2 (ENSGACG00000014957)	STEAP3 (ENSGACG00000014961)	ENSGACG00000014963	ENSGACG00000014964	GABRG3 (ENSGACG00000014966)	GABRA5 (ENSGACG00000014968)	GABRB3 (ENSGACG00000014983)	ndfip2 (ENSGACG00000015007) #22	SLITRK1 (ENSGACG00000015024) #24	slitrk6 (ENSGACG00000015026) #25	SLITRK5 (ENSGACG00000015027) #26	ENSGACG00000015029	MID1 (ENSGACG00000015030)	ARHGAP6 (ENSGACG00000015035)	MSL3 (ENSGACG00000015038)	ENSGACG00000015050	ENSGACG00000015054	il1rapl1b (ENSGACG00000015056)	caskb (ENSGACG00000015058)	GPR34 (ENSGACG00000015061)	cenpl (ENSGACG00000015062)	FUNDC1 (ENSGACG00000015063)	kdm6al (ENSGACG00000015068)
Eupecaria_C	ANCESTRAL SPECIES	27	ENSGT01070000253766.C.o.b	ENSGT00390000005345	ENSGT00940000154242.a.c	ENSGT01030000234996	ENSGT00390000014037.d	ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a	ENSGT00940000178790	ENSGT00390000006925	ENSGT00940000155607.mc.b	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT01090000260076.b.b.a	ENSGT00390000015719.d.c	ENSGT00940000155600.a.a.h	ENSGT01060000248589.C.g.b	ENSGT00390000013877	ENSGT00940000154517.nb	ENSGT00940000166518
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	31	ENSGT01070000253766.C.o.b	ENSGT00390000005345	ENSGT00940000154242.a.c	ENSGT01030000234996	ENSGT00390000014037.d	ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a	ENSGT00940000178790	ENSGT00390000006925	ENSGT00940000155607.mc.b	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000183035.a.b.b	ENSGT01090000260076.b.b.a	ENSGT00390000015719.d.c	ENSGT00940000155600.a.a.h	ENSGT01060000248589.C.g.b	ENSGT00390000013877	ENSGT00940000154517.nb	ENSGT00940000166518	ENSGT00940000163827.b
Large yellow croaker	MODERN SPECIES	486	XKR6 (ENSLCRG00005006121)	ENSLCRG00005006123	ENSLCRG00005006124	ENSLCRG00005006126	ENSLCRG00005006127	EN1 (ENSLCRG00005006128)	C1QL2 (ENSLCRG00005006129)	STEAP3 (ENSLCRG00005006131)	DBI (ENSLCRG00005006135)	ENSLCRG00005006288	ENSLCRG00005006290	ENSLCRG00005006293	GABRG3 (ENSLCRG00005006312)	GABRA5 (ENSLCRG00005006314)	GABRB3 (ENSLCRG00005006320)	ndfip2 (ENSLCRG00005006326) #22	spry2 (ENSLCRG00005006327) #23	SLITRK1 (ENSLCRG00005006330) #24	slitrk6 (ENSLCRG00005006331) #25	SLITRK5 (ENSLCRG00005006333) #26	MID1 (ENSLCRG00005006335)	ARHGAP6 (ENSLCRG00005006337)	msl3 (ENSLCRG00005006672)	ENSLCRG00005006683	il1rapl1b (ENSLCRG00005006686)	nr0b1 (ENSLCRG00005006709)	caskb (ENSLCRG00005006716)	GPR34 (ENSLCRG00005007109)	cenpl (ENSLCRG00005007110)	FUNDC1 (ENSLCRG00005007111)	kdm6al (ENSLCRG00005007211)
European seabass	MODERN SPECIES	15	ENSDLAG00005023710	ENSDLAG00005023712	ENSDLAG00005023713	ENSDLAG00005031685	ENSDLAG00005023724	ENSDLAG00005023726	STEAP3 (ENSDLAG00005029717)	ENSDLAG00005023736	C1QL2 (ENSDLAG00005023738)	DBI (ENSDLAG00005023752)	ENSDLAG00005023780	ENSDLAG00005023783	GABRG3 (ENSDLAG00005023792)	ENSDLAG00005023812	GABRB3 (ENSDLAG00005023822)	ndfip2 (ENSDLAG00005034386) #22	ENSDLAG00005034067 #23	ENSDLAG00005026343 #24	slitrk6 (ENSDLAG00005023855) #25	ENSDLAG00005027947 #26	ENSDLAG00005026607	ENSDLAG00005023865	ENSDLAG00005023872	ENSDLAG00005023894	ENSDLAG00005023936	ENSDLAG00005024076	ENSDLAG00005027621	ENSDLAG00005029710	ENSDLAG00005024220	ENSDLAG00005005746	ENSDLAG00005030864
Gilthead seabream	MODERN SPECIES	16	enpp4 (ENSSAUG00010026981)	XKR6 (ENSSAUG00010026978)	ENSSAUG00010026973	ENSSAUG00010026968	ENSSAUG00010026966	ENSSAUG00010026965	EN1 (ENSSAUG00010026963)	C1QL2 (ENSSAUG00010026961)	STEAP3 (ENSSAUG00010026960)	DBI (ENSSAUG00010026958)	ENSSAUG00010026954	ENSSAUG00010026951	GABRG3 (ENSSAUG00010026947)	GABRA5 (ENSSAUG00010026939)	GABRB3 (ENSSAUG00010026932)	ndfip2 (ENSSAUG00010026926) #22	spry2 (ENSSAUG00010026925) #23	SLITRK1 (ENSSAUG00010026923) #24	ENSSAUG00010026922	slitrk6 (ENSSAUG00010026918) #25	SLITRK5 (ENSSAUG00010026917) #26	ENSSAUG00010026914	MID1 (ENSSAUG00010026911)	ARHGAP6 (ENSSAUG00010026892)	MSL3 (ENSSAUG00010026888)	ENSSAUG00010026880	il1rapl1b (ENSSAUG00010026874)	nr0b1 (ENSSAUG00010026870)	GPR34 (ENSSAUG00010026869)	caskb (ENSSAUG00010026855)	cenpl (ENSSAUG00010026846)
Percomorphaceae_D	ANCESTRAL SPECIES	23	ENSGT00390000005345	ENSGT00940000175432	ENSGT00940000154242.a.c	ENSGT01030000234996	ENSGT00390000014037.d	ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a	ENSGT00940000178790	ENSGT00940000165152	ENSGT00940000155607.mc.b	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT01090000260076.b.b.a	ENSGT00390000015719.d.c	ENSGT00940000155600.a.a.h	ENSGT01060000248589.C.g.b	ENSGT00390000013877	ENSGT00940000154517.nb	ENSGT00940000166518
Anabantaria	ANCESTRAL SPECIES	23	ENSGT01070000253766.C.o.b	ENSGT00390000005345	ENSGT00940000154242.a.c	ENSGT01030000234996	ENSGT00390000014037.d	ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a	ENSGT00940000178790	ENSGT00940000165152	ENSGT00940000155607.mc.b	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT01090000260076.b.b.a	ENSGT00940000155600.a.a.h	ENSGT01060000248589.C.g.b	ENSGT00390000013877	ENSGT00940000154517.nb	ENSGT00940000166518	ENSGT00940000163827.b
Zig-zag eel	MODERN SPECIES	11	ENSMAMG00000005036	ENSMAMG00000005052	ENSMAMG00000005081	ENSMAMG00000024621	ENSMAMG00000005123	EN1 (ENSMAMG00000005134)	C1QL2 (ENSMAMG00000027618)	STEAP3 (ENSMAMG00000005197)	DBI (ENSMAMG00000005224)	ENSMAMG00000005413	ENSMAMG00000026028	ENSMAMG00000005549	GABRG3 (ENSMAMG00000005586)	ENSMAMG00000005619	GABRB3 (ENSMAMG00000005647)	ENSMAMG00000005832 #22	ENSMAMG00000005860	ENSMAMG00000005967	ENSMAMG00000005984	ENSMAMG00000006029	ENSMAMG00000006057	ENSMAMG00000006165	ENSMAMG00000027216	ENSMAMG00000006189	ENSMAMG00000006240	ENSMAMG00000007790	ENSMAMG00000027682	rtraf (ENSMAMG00000027471)	NID2 (ENSMAMG00000008242)	ENSMAMG00000028696	ptger2a (ENSMAMG00000027924)
Anabantoidei	ANCESTRAL SPECIES	23	ENSGT00940000153470.a.a.a.a	ENSGT00940000156406.a	ENSGT00940000158831	ENSGT01070000253766.C.o.b	ENSGT00390000005345	ENSGT00940000154242.a.c	ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a	ENSGT00940000165152	ENSGT00940000155607.mc.b	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT01090000260076.b.b.a	ENSGT01060000248589.C.g.b	ENSGT00940000155600.a.a.h	ENSGT00390000013877	ENSGT00940000154517.nb	ENSGT00940000166518	ENSGT00940000163827.b
Climbing perch	MODERN SPECIES	11	ENSATEG00000000585	ENSATEG00000000590	ENSATEG00000000640	ENSATEG00000000790	EN1 (ENSATEG00000027645)	C1QL2 (ENSATEG00000000918)	STEAP3 (ENSATEG00000000840)	DBI (ENSATEG00000000972)	ENSATEG00000001078	ENSATEG00000029356	ENSATEG00000001199	ENSATEG00000001224	GABRG3 (ENSATEG00000001236)	ENSATEG00000001385	GABRB3 (ENSATEG00000001564)	ndfip2 (ENSATEG00000001611) #22	ENSATEG00000001966 #23	ENSATEG00000001979 #24	slitrk6 (ENSATEG00000001996) #25	ENSATEG00000002005 #26	MID1 (ENSATEG00000002023)	ARHGAP6 (ENSATEG00000002055)	MSL3 (ENSATEG00000002120)	ENSATEG00000002183	ENSATEG00000002333	ENSATEG00000002383	ENSATEG00000002418	ENSATEG00000027083	ENSATEG00000002431	ENSATEG00000002437	ENSATEG00000002594
Siamese fighting fish	MODERN SPECIES	10	lypd6 (ENSBSLG00000022949)	ENSBSLG00000023109	ENSBSLG00000023278	ENSBSLG00000023315	unc50 (ENSBSLG00000023389)	ENSBSLG00000023567	EN1 (ENSBSLG00000023687)	C1QL2 (ENSBSLG00000023705)	STEAP3 (ENSBSLG00000023728)	ENSBSLG00000023766	ENSBSLG00000023884	ENSBSLG00000024111	GABRG3 (ENSBSLG00000024200)	ENSBSLG00000024345	GABRB3 (ENSBSLG00000024665)	ndfip2 (ENSBSLG00000024810) #22	spry2 (ENSBSLG00000024912) #23	slitrk6 (ENSBSLG00000024980) #25	SLITRK5 (ENSBSLG00000024997) #26	MID1 (ENSBSLG00000025089)	ARHGAP6 (ENSBSLG00000000135)	MSL3 (ENSBSLG00000000198)	ENSBSLG00000000259	ENSBSLG00000000295	ENSBSLG00000000315	ENSBSLG00000000325	il1rapl1b (ENSBSLG00000000351)	ENSBSLG00000000429	ENSBSLG00000000581	cenpl (ENSBSLG00000000592)	FUNDC1 (ENSBSLG00000000632)
Carangaria	ANCESTRAL SPECIES	23	ENSGT00390000005345	ENSGT00940000175432	ENSGT00940000154242.a.c	ENSGT01030000234996	ENSGT00390000014037.d	ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a	ENSGT00940000178790	ENSGT00940000173761	ENSGT00940000155607.mc.b	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT01090000260076.b.b.a	ENSGT00390000015719.d.c	ENSGT00940000155600.a.a.h	ENSGT01060000248589.C.g.b	ENSGT00390000013877	ENSGT00940000154517.nb	ENSGT00940000166518
Carangaria_A	ANCESTRAL SPECIES	23	ENSGT01070000253766.C.o.b	ENSGT00390000005345	ENSGT00940000154242.a.c	ENSGT01030000234996	ENSGT00390000014037.d	ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a	ENSGT00940000160618	ENSGT00390000006925	ENSGT00940000155607.mc.b	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT01090000260076.b.b.a	ENSGT00390000015719.d.c	ENSGT00940000155600.a.a.h	ENSGT01060000248589.C.g.b	ENSGT00390000013877	ENSGT00940000154517.nb	ENSGT00940000166518
Seriola	ANCESTRAL SPECIES	37	ENSGT00390000005345	ENSGT00940000154242.a.c	ENSGT01030000234996	ENSGT00390000014037.d	ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000160618	ENSGT00390000006925	ENSGT00940000178790	ENSGT00940000173761	ENSGT00940000155607.mc.b	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT01090000260076.b.b.a	ENSGT00390000015719.d.c	ENSGT00940000155600.a.a.h	ENSGT01060000248589.C.g.b	ENSGT00390000013877	ENSGT00940000154517.nb	ENSGT00940000166518
Greater amberjack	MODERN SPECIES	45	enpp4 (ENSSDUG00000011112)	XKR6 (ENSSDUG00000011123)	ENSSDUG00000011149	ENSSDUG00000011180	ENSSDUG00000011220	ENSSDUG00000011188	en1a (ENSSDUG00000011233)	C1QL2 (ENSSDUG00000011247)	STEAP3 (ENSSDUG00000011279)	SCTR (ENSSDUG00000011300)	DBI (ENSSDUG00000011403)	ENSSDUG00000011415	GABRG3 (ENSSDUG00000011518)	GABRA5 (ENSSDUG00000011549)	GABRB3 (ENSSDUG00000011560)	ndfip2 (ENSSDUG00000011580) #22	spry2 (ENSSDUG00000011593) #23	SLITRK1 (ENSSDUG00000011603) #24	slitrk6 (ENSSDUG00000011612) #25	SLITRK5 (ENSSDUG00000011619) #26	MID1 (ENSSDUG00000011625)	ARHGAP6 (ENSSDUG00000011663)	ENSSDUG00000011764	il1rapl1b (ENSSDUG00000011989)	nr0b1 (ENSSDUG00000012011)	CASK (ENSSDUG00000012036)	GPR34 (ENSSDUG00000012226)	cenpl (ENSSDUG00000012259)	FUNDC1 (ENSSDUG00000012234)	kdm6al (ENSSDUG00000012275)	ENSSDUG00000012471
Yellowtail amberjack	MODERN SPECIES	3253							KIF26A (ENSSLDG00000011138)	ENSSLDG00000011223	smpdl3a (ENSSLDG00000011349)	fabp7b (ENSSLDG00000011439)	ENSSLDG00000012036	ENSSLDG00000012133	ENSSLDG00000012320	crip2l (ENSSLDG00000012472)	ENSSLDG00000012503	ndfip2 (ENSSLDG00000012514) #22	spry2 (ENSSLDG00000012534) #23	SLITRK1 (ENSSLDG00000012545) #24	ENSSLDG00000012558	slitrk6 (ENSSLDG00000012572) #25	SLITRK5 (ENSSLDG00000012580) #26	ENSSLDG00000012586	MID1 (ENSSLDG00000012623)	ARHGAP6 (ENSSLDG00000012666)	MSL3 (ENSSLDG00000012737)	ENSSLDG00000012874	il1rapl1b (ENSSLDG00000012931)	nr0b1 (ENSSLDG00000012983)	CASK (ENSSLDG00000013074)	GPR34 (ENSSLDG00000013295)	cenpl (ENSSLDG00000013305)
Barramundi perch	MODERN SPECIES	134	ENSLCAG00010023518	ENSLCAG00010023513	ENSLCAG00010023512	ENSLCAG00010023507	EN1 (ENSLCAG00010023506)	C1QL2 (ENSLCAG00010023503)	STEAP3 (ENSLCAG00010023501)	ENSLCAG00010023496	DBI (ENSLCAG00010023495)	ENSLCAG00010023490	GABRG3 (ENSLCAG00010023477)	GABRA5 (ENSLCAG00010023474)	GABRB3 (ENSLCAG00010023469)	ENSLCAG00010023452	ENSLCAG00010023449	ndfip2 (ENSLCAG00010023441) #22	spry2 (ENSLCAG00010023437) #23	SLITRK1 (ENSLCAG00010023434) #24	slitrk6 (ENSLCAG00010023432) #25	SLITRK5 (ENSLCAG00010023431) #26	MID1 (ENSLCAG00010023426)
Pleuronectoidei	ANCESTRAL SPECIES	42	ENSGT00390000005345	ENSGT00940000175432	ENSGT00940000154242.a.c	ENSGT01030000234996	ENSGT00390000014037.d	ENSGT00940000160811.c.b	ENSGT00940000156913.b.j.a	ENSGT00390000008042.A.b.d	ENSGT00940000154846.a.a	ENSGT00940000156402.A.a	ENSGT00940000178790	ENSGT00940000173761	ENSGT00940000155607.mc.b	ENSGT00940000156234.a.b	ENSGT00940000154713.A.c.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000183035.a.b.b	ENSGT01090000260076.b.b.a	ENSGT00940000155600.a.a.h	ENSGT01060000248589.C.g.b	ENSGT00390000013877	ENSGT00940000154517.nb	ENSGT00940000166518	ENSGT00940000163827.b	ENSGT00940000159090
Turbot	MODERN SPECIES		ENSSMAG00000002846	ENSSMAG00000002735	ENSSMAG00000030615	ENSSMAG00000002704	ENSSMAG00000002600	ENSSMAG00000002579	ENSSMAG00000002568	ENSSMAG00000002549	ENSSMAG00000002521	ENSSMAG00000002440	ENSSMAG00000002433	ENSSMAG00000002346	ENSSMAG00000002313	ENSSMAG00000002278	ENSSMAG00000002175 #33	ndfip2 (ENSSMAG00000003438) #22	ENSSMAG00000003455 #23	ENSSMAG00000003464 #24	slitrk6 (ENSSMAG00000003486) #25	ENSSMAG00000003494 #26	ENSSMAG00000003530	ENSSMAG00000003575	ENSSMAG00000003618	ENSSMAG00000003677	ENSSMAG00000026957	ENSSMAG00000005432	ENSSMAG00000005501	ENSSMAG00000005546	ENSSMAG00000037945	ENSSMAG00000005559	ENSSMAG00000005721
Tongue sole	MODERN SPECIES	5	ccnt2b (ENSCSEG00000009159)	mgat5 (ENSCSEG00000009182)	clic5a (ENSCSEG00000009225)	enpp4 (ENSCSEG00000009252)	XKR6 (ENSCSEG00000009261)	ENSCSEG00000009277	ENSCSEG00000009282	en1a (ENSCSEG00000009287)	C1QL2 (ENSCSEG00000009299)	STEAP3 (ENSCSEG00000009309)	DBI (ENSCSEG00000009319)	ENSCSEG00000009328	GABRG3 (ENSCSEG00000009345)	ENSCSEG00000009365	GABRB3 (ENSCSEG00000009392)	ndfip2 (ENSCSEG00000009420) #22	spry2 (ENSCSEG00000009435) #23	zgc:91910 (ENSCSEG00000009449)	SLITRK1 (ENSCSEG00000009457) #24	slitrk6 (ENSCSEG00000009954) #25	SLITRK5 (ENSCSEG00000011136) #26	MID1 (ENSCSEG00000011143)	ARHGAP6 (ENSCSEG00000011168)	ENSCSEG00000011268	il1rapl1b (ENSCSEG00000011343)	ENSCSEG00000011387	GPR34 (ENSCSEG00000011424)	cenpl (ENSCSEG00000011426)	FUNDC1 (ENSCSEG00000011436)	kdm6al (ENSCSEG00000011466)	ENSCSEG00000011549
Pinecone sodierfish	MODERN SPECIES	11	ENSMMDG00005005260	SLC5A3 (ENSMMDG00005004000)	ENSMMDG00005003973	ENSMMDG00005003968	ENSMMDG00005003950	ENSMMDG00005003941	en1a (ENSMMDG00005003937)	C1QL2 (ENSMMDG00005003933)	STEAP3 (ENSMMDG00005003930)	ENSMMDG00005003770	ENSMMDG00005003755	ENSMMDG00005003749	GABRG3 (ENSMMDG00005003024)	GABRA5 (ENSMMDG00005002795)	GABRB3 (ENSMMDG00005002700)	ndfip2 (ENSMMDG00005002678) #22	spry2 (ENSMMDG00005002670) #23	SLITRK1 (ENSMMDG00005002664) #24	ENSMMDG00005002654	slitrk6 (ENSMMDG00005022401) #25	SLITRK5 (ENSMMDG00005022400) #26	MID1 (ENSMMDG00005022398)	ARHGAP6 (ENSMMDG00005022394)	MSL3 (ENSMMDG00005022382)	ENSMMDG00005022376	il1rapl1b (ENSMMDG00005022370)	nr0b1 (ENSMMDG00005022367)	GPR34 (ENSMMDG00005022365)	caskb (ENSMMDG00005022247)	cenpl (ENSMMDG00005022234)	FUNDC1 (ENSMMDG00005022220)
Cod	MODERN SPECIES	17	ENSGMOG00000022691	ENSGMOG00000035170	ENSGMOG00000015640	ENSGMOG00000011435	ENSGMOG00000011535	ENSGMOG00000024712	ENSGMOG00000028313	ENSGMOG00000030942	ENSGMOG00000035992	ENSGMOG00000024069	ENSGMOG00000029693	ENSGMOG00000029171	ENSGMOG00000024209	ENSGMOG00000030520	ENSGMOG00000025807	ndfip2 (ENSGMOG00000008745) #22	ENSGMOG00000026150 #23	ENSGMOG00000034484	ENSGMOG00000002620 #24	ENSGMOG00000036209	slitrk6 (ENSGMOG00000002638) #25	ENSGMOG00000002657 #26	ENSGMOG00000032152	MID1 (ENSGMOG00000016484)	ARHGAP6 (ENSGMOG00000015892)	MSL3 (ENSGMOG00000015932)	ENSGMOG00000007185	ENSGMOG00000010282	ENSGMOG00000027811	ENSGMOG00000016450	ENSGMOG00000028246
Otomorpha	ANCESTRAL SPECIES	234										ENSGT00940000161508.b	ENSGT00940000155126.s.a	ENSGT00390000004553	ENSGT00940000160059.a.b.a	ENSGT00550000075037	ENSGT00950000183165.a.a.b.o.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.a.b ##28	ENSGT00390000010543	ENSGT00940000155318.b.b	ENSGT00940000155502	ENSGT00940000160594.g.b.b	ENSGT00950000182897.B.a.b.b.b	ENSGT01030000234621.F.c	ENSGT00940000161679.b	ENSGT00940000158367.e	ENSGT00940000154840.b.e.a.a.a
Otophysi	ANCESTRAL SPECIES	60										ENSGT00940000161508.b	ENSGT00940000155126.s.a	ENSGT00390000004553	ENSGT00940000160059.a.b.a	ENSGT00550000075037	ENSGT00950000183165.a.a.b.o.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.a.b ##28	ENSGT00390000010543	ENSGT00940000155318.b.b	ENSGT00940000155502	ENSGT00940000160594.g.b.b	ENSGT00950000182897.B.a.b.b.b	ENSGT01030000234621.F.c	ENSGT00940000161679.b	ENSGT00940000158367.e	ENSGT01090000260564
Characiphysae	ANCESTRAL SPECIES	229																ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.a.b ##28
Characiphysae_b	ANCESTRAL SPECIES	261																ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.a.b ##28
Characoidei	ANCESTRAL SPECIES	514																ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23
Mexicana tetra	MODERN SPECIES	532																ndfip2 (ENSAMXG00000040368) #22	ENSAMXG00000029634 #23
Red-bellied piranha	MODERN SPECIES	852													ENSPNAG00000012879	ENSPNAG00000006679	ENSPNAG00000002559	ndfip2 (ENSPNAG00000013129) #22
Electric eel	MODERN SPECIES	346														ENSEEEG00000017517	ENSEEEG00000017515	ndfip2 (ENSEEEG00000017513) #22	spry2 (ENSEEEG00000017510) #23	ENSEEEG00000017508	ENSEEEG00000017506	SLITRK1 (ENSEEEG00000017504) #24
Channel catfish	MODERN SPECIES	18	atp1a1a.1 (ENSIPUG00000007549)	kpnb3 (ENSIPUG00000007628)	ENSIPUG00000007711	brat1 (ENSIPUG00000007734)	dmd (ENSIPUG00000007857)	ENSIPUG00000009051	knstrn (ENSIPUG00000009181)	ENSIPUG00000009211	atnb233 (ENSIPUG00000009292)	mpc2a (ENSIPUG00000009323)	ENSIPUG00000009359	cnpy3 (ENSIPUG00000009378)	ENSIPUG00000009405	spry2 (ENSIPUG00000009437) #23	n6amt1 (ENSIPUG00000009452)	Ndfip2 (ENSIPUG00000009529) #22	ENSIPUG00000009564	ENSIPUG00000009572	ENSIPUG00000009585	adamts5 (ENSIPUG00000009603)	adamts1 (ENSIPUG00000009644)	cyyr1 (ENSIPUG00000009678)	app (ENSIPUG00000009697)	atp5pf (ENSIPUG00000009861)	jam2 (ENSIPUG00000009888)	mrpl39 (ENSIPUG00000009935)	ENSIPUG00000009944	ENSIPUG00000009961	mrpl16 (ENSIPUG00000009966)	txnl4b (ENSIPUG00000010002)	trmt10c (ENSIPUG00000010010)
Cyprinoidei	ANCESTRAL SPECIES	34	ENSGT00390000016929	ENSGT01030000234607.A.b	ENSGT00530000063410.b	ENSGT00940000164110	ENSGT00950000183019.f.b.b.d	ENSGT00390000000862	ENSGT00940000156160.b.a	ENSGT00950000183214.a.b.a.b.f.b.a.a	ENSGT00940000155270.i.b.a	ENSGT00940000161508.b	ENSGT00940000155126.s.a	ENSGT00390000004553	ENSGT00940000160059.a.b.a	ENSGT00550000075037	ENSGT00950000183165.a.a.b.o.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.a.b ##28	ENSGT00390000010543	ENSGT00940000155318.b.b	ENSGT00940000155502	ENSGT00940000160594.g.b.b	ENSGT00950000182897.B.a.b.b.b	ENSGT01030000234621.F.c	ENSGT00940000161679.b	ENSGT00940000158367.e	ENSGT00980000200000
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	117	ENSGT00390000016929	ENSGT01030000234607.A.b.a	ENSGT00530000063410.b	ENSGT00940000164110.c	ENSGT00950000183019.f.b.b.d.a	ENSGT00390000000862.c	ENSGT00940000156160.b.a.g	ENSGT00950000183214.a.b.a.b.f.b.a.a	ENSGT00940000155270.i.b.a.b	ENSGT00940000161508.b.e	ENSGT00940000155126.s.a.b	ENSGT00390000004553.g	ENSGT00940000160059.a.b.a.a	ENSGT00550000075037.c	ENSGT00950000183165.a.a.b.o.b	ENSGT00390000012721.b.q #22	ENSGT00950000183055.a.a.e #23	ENSGT00940000159810.c.b #24	ENSGT00940000160718.c #25	ENSGT00940000158453.a.e #26	ENSGT01050000244955.a.a.i #27	ENSGT01050000244897.a.b.b.a.b.a ##28
Goldfish	MODERN SPECIES	18	OXGR1 (ENSCARG00000069636)	OXGR1 (ENSCARG00000069635)	slc5a3a (ENSCARG00000069632)	ENSCARG00000069631	ENSCARG00000069630	ENSCARG00000069628	nrp2a (ENSCARG00000069620)	ENSCARG00000069616	cpo (ENSCARG00000069612)	cpo (ENSCARG00000069605)	fn1b (ENSCARG00000059810)	atic (ENSCARG00000057514)	mnx2b (ENSCARG00000057417)	stk16 (ENSCARG00000057390)	tuba8l2 (ENSCARG00000057375)	ndfip2 (ENSCARG00000057274) #22	spry2 (ENSCARG00000057245) #23	ERBB4 (ENSCARG00000048984)	lancl1 (ENSCARG00000048480)	mylz3 (ENSCARG00000048296)	ENSCARG00000048273	mxa (ENSCARG00000046959)	efnb2b (ENSCARG00000046877)	arglu1b (ENSCARG00000046869)	en1b (ENSCARG00000046865)	radil (ENSCARG00000046839)	MMD2 (ENSCARG00000046816)	ENSCARG00000022774	ENSCARG00000022751	FAM83G (ENSCARG00000022738)	ENSCARG00000022725
Cyprininae_a	ANCESTRAL SPECIES	158	ENSGT00390000016929	ENSGT01030000234607.A.b.a	ENSGT00530000063410.b.g	ENSGT00940000164110.c	ENSGT00950000183019.f.b.b.d.a	ENSGT00390000000862.c	ENSGT00940000156160.b.a.g	ENSGT00950000183214.a.b.a.b.f.b.a.a	ENSGT00940000155270.i.b.a.b	ENSGT00940000161508.b.e	ENSGT00940000155126.s.a.b	ENSGT00390000004553.g	ENSGT00940000160059.a.b.a.a	ENSGT00550000075037.c	ENSGT00950000183165.a.a.b.o.b	ENSGT00390000012721.b.q #22	ENSGT00950000183055.a.a.e #23	ENSGT00940000160718.c #25	ENSGT00940000158453.a.e #26	ENSGT01050000244955.a.a.i #27	ENSGT01050000244897.a.b.b.a.b.a ##28	ENSGT00390000010543.k.a	ENSGT00940000155318.b.b.a	ENSGT00940000155502.s	ENSGT00940000160594.g.b.b.a	ENSGT00950000182897.B.a.b.b.b.e	ENSGT01030000234621.F.c.j	ENSGT00940000161679.b.b	ENSGT00940000158367.e.c	ENSGT00980000200000.a.b	ENSGT00990000209906.b
Common carp reference	MODERN SPECIES	27	mdh1b (ENSCCRG00000023101)	retreg2 (ENSCCRG00000063718)	ENSCCRG00000023065	cnppd1 (ENSCCRG00000082729)	abcb6a (ENSCCRG00000022872)	ENSCCRG00000018765	pard3ba (ENSCCRG00000057087)	ENSCCRG00000073316	nrp2a (ENSCCRG00000005339)	cpo (ENSCCRG00000005401)	fn1b (ENSCCRG00000017095)	atic (ENSCCRG00000059023)	mnx2b (ENSCCRG00000007561)	stk16 (ENSCCRG00000007566)	tuba8l2 (ENSCCRG00000007571)	ndfip2 (ENSCCRG00000078945) #22	spry2 (ENSCCRG00000072447) #23	slitrk6 (ENSCCRG00000078661) #25	SLITRK5 (ENSCCRG00000077853) #26	gpc5a (ENSCCRG00000010392) #27	gpc6a (ENSCCRG00000075847) ##28	ENSCCRG00000039024	FARP1 (ENSCCRG00000066559)	kpnb3 (ENSCCRG00000022839)	rap2ab (ENSCCRG00000021398)	mbnl2 (ENSCCRG00000015564)	OXGR1 (ENSCCRG00000071030)	slc5a3a (ENSCCRG00000057022)	ENSCCRG00000001284	ENSCCRG00000042961	ENSCCRG00000080429
Golden-line barbel	MODERN SPECIES	562	gtf3c3 (ENSSGRG00000046479)	ENSSGRG00000046612	mdh1b (ENSSGRG00000046613)	retreg2 (ENSSGRG00000046614)	ENSSGRG00000046615	cnppd1 (ENSSGRG00000046616)	abcb6a (ENSSGRG00000046629)	ENSSGRG00000046821	pard3ba (ENSSGRG00000046823)	nrp2a (ENSSGRG00000046827)	cpo (ENSSGRG00000046842)	fn1b (ENSSGRG00000046843)	atic (ENSSGRG00000046878)	mnx2b (ENSSGRG00000048042)	tuba8l2 (ENSSGRG00000048043)	ndfip2 (ENSSGRG00000048046) #22	spry2 (ENSSGRG00000048048) #23
Cyprininae	ANCESTRAL SPECIES	119									ENSGT00940000155270.i.b.a.a	ENSGT00940000161508.b.f	ENSGT00940000155126.s.a.a	ENSGT00390000004553.h	ENSGT00940000160059.a.b.a.b	ENSGT00550000075037.d	ENSGT00950000183165.a.a.b.o.a	ENSGT00390000012721.b.r #22	ENSGT00950000183055.a.a.f #23	ENSGT00940000159810.d #24	ENSGT00940000160718.d #25	ENSGT00940000158453.a.f #26	ENSGT01050000244955.a.a.j #27	ENSGT01050000244897.a.b.b.a.b.b ##28	ENSGT00390000010543.l	ENSGT00940000155318.b.b.b	ENSGT00940000155502.t	ENSGT00940000160594.g.b.b.b	ENSGT00950000182897.B.a.b.b.b.f	ENSGT01030000234621.F.c.i	ENSGT00940000161679.b.a	ENSGT00940000158367.e.d	ENSGT00980000200000.b
Cyprininae_a	ANCESTRAL SPECIES	125	ENSGT00940000155466.e.a.v	ENSGT01030000234607.A.b.b	ENSGT00530000063410.b.h	ENSGT00940000164110.d	ENSGT00950000183019.f.b.b.d.b	ENSGT00390000000862.d	ENSGT00940000156160.b.a.h	ENSGT00950000183214.a.b.a.b.f.b.a.b	ENSGT00940000155270.i.b.a.a	ENSGT00940000161508.b.f	ENSGT00940000155126.s.a.a	ENSGT00390000004553.h	ENSGT00940000160059.a.b.a.b	ENSGT00550000075037.d	ENSGT00950000183165.a.a.b.o.a	ENSGT00390000012721.b.r #22	ENSGT00950000183055.a.a.f #23	ENSGT00940000159810.d #24	ENSGT00940000160718.d #25	ENSGT00940000158453.a.f #26	ENSGT01050000244955.a.a.j #27	ENSGT01050000244897.a.b.b.a.b.b ##28	ENSGT00390000010543.l	ENSGT00940000155318.b.b.b	ENSGT00940000155502.t	ENSGT00940000160594.g.b.b.b	ENSGT00950000182897.B.a.b.b.b.f	ENSGT01030000234621.F.c.i	ENSGT00940000161679.b.a	ENSGT00940000158367.e.d	ENSGT00980000200000.b
Golden-line barbel	MODERN SPECIES	371	ENSSGRG00000015048	cnppd1 (ENSSGRG00000015017)	abcb6a (ENSSGRG00000014835)	ENSSGRG00000014813	ENSSGRG00000014812	ENSSGRG00000014810	ENSSGRG00000014809	ENSSGRG00000014808	nrp2a (ENSSGRG00000014790)	cpo (ENSSGRG00000014789)	fn1b (ENSSGRG00000006839)	atic (ENSSGRG00000002514)	ENSSGRG00000002437	stk16 (ENSSGRG00000002423)	ENSSGRG00000002311	ndfip2 (ENSSGRG00000002306) #22	spry2 (ENSSGRG00000002305) #23
Common carp reference	MODERN SPECIES	22	klf7a (ENSCCRG00000060049)	ENSCCRG00000030814	ENSCCRG00000003929	retreg2 (ENSCCRG00000032443)	ENSCCRG00000023072	cnppd1 (ENSCCRG00000079841)	abcb6a (ENSCCRG00000078899)	ENSCCRG00000024157	nrp2a (ENSCCRG00000005417)	cpo (ENSCCRG00000067406)	fn1b (ENSCCRG00000003115)	atic (ENSCCRG00000007553)	mnx2b (ENSCCRG00000078365)	stk16 (ENSCCRG00000013994)	ENSCCRG00000014401	ndfip2 (ENSCCRG00000013997) #22	spry2 (ENSCCRG00000067691) #23	ENSCCRG00000059962	ENSCCRG00000058343	ENSCCRG00000077467	SLITRK1 (ENSCCRG00000081534) #24	slitrk6 (ENSCCRG00000072693) #25	SLITRK5 (ENSCCRG00000069880) #26	ENSCCRG00000080173	ENSCCRG00000070396	gpc5a (ENSCCRG00000023242) #27	gpc6a (ENSCCRG00000055251) ##28	ENSCCRG00000064822	ENSCCRG00000068661	ENSCCRG00000077121	FARP1 (ENSCCRG00000045516)
Goldfish	MODERN SPECIES		uncx4.1 (ENSCARG00000028879)	micall2b (ENSCARG00000028910)	ENSCARG00000029016	ENSCARG00000029831	ELFN1 (ENSCARG00000029841)	ENSCARG00000029848	ENSCARG00000029859	ENSCARG00000029863	nrp2a (ENSCARG00000029896)	cpo (ENSCARG00000030462)	fn1b (ENSCARG00000031169)	ENSCARG00000059532	mnx2b (ENSCARG00000059558)	stk16 (ENSCARG00000059585)	ENSCARG00000059596	ndfip2 (ENSCARG00000059625) #22	ENSCARG00000059641	ENSCARG00000059651	spry2 (ENSCARG00000059657) #23	ENSCARG00000059669	ENSCARG00000059678	ENSCARG00000059691	ENSCARG00000059721	DONSON (ENSCARG00000059762)	runx1 (ENSCARG00000059816)	ENSCARG00000060293	urp2 (ENSCARG00000060303)	RCAN1 (ENSCARG00000060311)	ENSCARG00000060325	atp1a1a.4 (ENSCARG00000060353)	ENSCARG00000060886
Zebrafish	MODERN SPECIES		ENSDARG00000074031	mdh1b (ENSDARG00000018008)	retreg2 (ENSDARG00000063270)	ENSDARG00000017537	cnppd1 (ENSDARG00000027078)	abcb6a (ENSDARG00000063297)	ENSDARG00000113935	pard3ba (ENSDARG00000092671)	nrp2a (ENSDARG00000096546)	cpo (ENSDARG00000077688)	fn1b (ENSDARG00000006526)	mnx2b (ENSDARG00000030350)	atic (ENSDARG00000016706)	stk16 (ENSDARG00000037777)	tuba8l2 (ENSDARG00000031164)	ndfip2 (ENSDARG00000033928) #22	spry2 (ENSDARG00000078308) #23	slitrk6 (ENSDARG00000098769) #25	gpc5a (ENSDARG00000103647) #27	gpc6a (ENSDARG00000103156) ##28	ggact.1 (ENSDARG00000070581)	ggact.2 (ENSDARG00000038248)	ggact.3 (ENSDARG00000070579)	ENSDARG00000095179	FARP1 (ENSDARG00000074381)	kpnb3 (ENSDARG00000040245)	rap2ab (ENSDARG00000040246)	mbnl2 (ENSDARG00000018460)	oxgr1a.2 (ENSDARG00000078743)	oxgr1a.3 (ENSDARG00000040247)	oxgr1a.1 (ENSDARG00000033684)
Clupeiformes	ANCESTRAL SPECIES	275									ENSGT00940000161508.b.b	ENSGT00940000161508.b.a	ENSGT00940000155126.s.a	ENSGT00390000004553	ENSGT00940000160059.a.b.a	ENSGT00550000075037	ENSGT00950000183165.a.a.b.o.b	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #24	ENSGT00940000160718 #25	ENSGT00940000158453.a #26	ENSGT01050000244955.a.a #27	ENSGT01050000244897.a.b.b.a.b ##28	ENSGT00390000010543	ENSGT00940000155318.b.b	ENSGT00940000155502	ENSGT00940000160594.g.b.b	ENSGT00950000182897.B.a.b.b.b	ENSGT01030000234621.F.c	ENSGT00940000161679.b
Denticle herring	MODERN SPECIES	15	u2af1 (ENSDCDG00000022651)	cbsa (ENSDCDG00000020653)	cryaa (ENSDCDG00000020625)	ENSDCDG00000020623	HSF2BP (ENSDCDG00000020621)	ankrd10a (ENSDCDG00000020618)	ENSDCDG00000020616	RDX (ENSDCDG00000018247)	cpo (ENSDCDG00000018198)	cpo (ENSDCDG00000018187)	fn1b (ENSDCDG00000001187)	atic (ENSDCDG00000024979)	mnx2b (ENSDCDG00000024917)	stk16 (ENSDCDG00000024908)	tuba8l2 (ENSDCDG00000024892)	ndfip2 (ENSDCDG00000024877) #22	spry2 (ENSDCDG00000024865) #23	SLITRK1 (ENSDCDG00000024859) #24	slitrk6 (ENSDCDG00000024852) #25	SLITRK5 (ENSDCDG00000024847) #26	ENSDCDG00000024834	gpc5a (ENSDCDG00000024827) #27	gpc6a (ENSDCDG00000024818) ##28	ggact.3 (ENSDCDG00000024812)	FARP1 (ENSDCDG00000022899)	kpnb3 (ENSDCDG00000022637)	rap2ab (ENSDCDG00000022625)	mbnl2 (ENSDCDG00000022597)	OXGR1 (ENSDCDG00000022586)	OXGR1 (ENSDCDG00000022585)	slc5a3a (ENSDCDG00000022582)
Atlantic herring	MODERN SPECIES	13	phospho2 (ENSCHAG00000012682)	ppig (ENSCHAG00000012686)	klhl41b (ENSCHAG00000012831)	cbr1 (ENSCHAG00000012841)	setd4 (ENSCHAG00000012870)	cryzl1 (ENSCHAG00000012935)	ITSN1 (ENSCHAG00000013194)	cpo (ENSCHAG00000017094)	cpo (ENSCHAG00000017106)	cpo (ENSCHAG00000017168)	fn1b (ENSCHAG00000017358)	atic (ENSCHAG00000024190)	mnx2b (ENSCHAG00000024575)	stk16 (ENSCHAG00000024576)	tuba8l2 (ENSCHAG00000024583)	ndfip2 (ENSCHAG00000024619) #22	spry2 (ENSCHAG00000024624) #23	ENSCHAG00000024635	SLITRK1 (ENSCHAG00000024642) #24	slitrk6 (ENSCHAG00000024646) #25	SLITRK5 (ENSCHAG00000024654) #26	ENSCHAG00000024657	gpc5a (ENSCHAG00000024664) #27	gpc6a (ENSCHAG00000024676) ##28	ENSCHAG00000024724	ENSCHAG00000024725	GGACT (ENSCHAG00000024729)	GGACT (ENSCHAG00000024734)	FARP1 (ENSCHAG00000024765)	slc5a3a (ENSCHAG00000025196)	oxgr1a.2 (ENSCHAG00000025198)
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	133			ENSGT00940000158961	ENSGT01100000263512.a.a.a.b.a.a #18	ENSGT00390000013700.z	ENSGT00480000042679.b.b	ENSGT00940000155219.hb.a.b	ENSGT00940000165888.a	ENSGT00940000156894.c.a	ENSGT00950000185064	ENSGT00940000157767	ENSGT00940000156743.p.a	ENSGT00940000155079.b	ENSGT00940000162154.b #19	ENSGT00510000046929.a.d #21	ENSGT00390000012721.b.s #22	ENSGT00950000183055.a.a.j #23	ENSGT00940000159810.b #24	ENSGT00940000160718.b #25	ENSGT00940000158453.a.c #26	ENSGT01050000244955.a.a.g #27	ENSGT01050000244897.a.b.b.a.a ##28	ENSGT00940000156856 #29	ENSGT00940000153981.A.i #31	ENSGT00940000162795.a #32	ENSGT00940000153931.b #33	ENSGT00940000155232.t.a.b.a #34	ENSGT00940000156862 #35	ENSGT00940000165805	ENSGT00950000182897.B.a.b.b.b	ENSGT00940000160594.g.b
Asian bonytongue	MODERN SPECIES	5	ARHGAP6 (ENSSFOG00015002713)	MID1 (ENSSFOG00015002735)	SLC25A30 (ENSSFOG00015028935)	ednrba (ENSSFOG00015002813) #18	ENSSFOG00015031445	CNMD (ENSSFOG00015002816)	PCDH8 (ENSSFOG00015002839)	pcdh8 (ENSSFOG00015002846)	pcdh17 (ENSSFOG00015002878)	diaph3 (ENSSFOG00015002926)	ENSSFOG00015025976	ENSSFOG00015003043	PCDH9 (ENSSFOG00015003056)	pou4f1 (ENSSFOG00015003070) #19	RBM26 (ENSSFOG00015003102) #21	NDFIP2 (ENSSFOG00015003215) #22	SPRY2 (ENSSFOG00015003245) #23	SLITRK1 (ENSSFOG00015003263) #24	slitrk6 (ENSSFOG00015003269) #25	SLITRK5 (ENSSFOG00015026290) #26	gpc5a (ENSSFOG00015003323) #27	GPC6 (ENSSFOG00015003338) ##28	dct (ENSSFOG00015031286) #29	ENSSFOG00015028902 #31	CLDN10 (ENSSFOG00015003436) #34	ENSSFOG00015003454 #34	ENSSFOG00015030004 #35	CLDN10 (ENSSFOG00015003645) #34	HS6ST3 (ENSSFOG00015003659)	mbnl2 (ENSSFOG00015003664)	RAP2A (ENSSFOG00015032681)
P. kingsleyae	MODERN SPECIES	47											ENSPKIG00000006781	diaph3 (ENSPKIG00000006714)	PCDH20 (ENSPKIG00000006681)	PCDH9 (ENSPKIG00000006631)	pou4f1 (ENSPKIG00000006592) #19	NDFIP2 (ENSPKIG00000006574) #22	SPRY2 (ENSPKIG00000006559) #23	SLITRK1 (ENSPKIG00000006548) #24	slitrk6 (ENSPKIG00000006524) #25	SLITRK5 (ENSPKIG00000006493) #26	ENSPKIG00000006475	ENSPKIG00000006452	ENSPKIG00000006441	gpc5a (ENSPKIG00000006408) #27	gpc6b (ENSPKIG00000006285) ##28	dct (ENSPKIG00000006169) #29	GPR180 (ENSPKIG00000006143) #31	sox21b (ENSPKIG00000006125) #32	ENSPKIG00000006107	cldn10a (ENSPKIG00000006085) #34	CLDN10 (ENSPKIG00000006066) #34
Osteoglossiformes	ANCESTRAL SPECIES	110	ENSGT00950000182965.b.pb	ENSGT00940000153904.a.f	ENSGT00940000155821.c.a	ENSGT00390000015682	ENSGT01100000263512.a.a.a.b.a.b #18	ENSGT00940000157039.b	ENSGT00390000013700.y	ENSGT00940000155219.hb.a.a	ENSGT00940000165888.b	ENSGT00940000156894.c.b	ENSGT00940000155487	ENSGT00940000156743.p.b	ENSGT00940000162154.a #19	ENSGT00390000013512 #20	ENSGT00510000046929.a.c #21	ENSGT00390000012721.b.t #22	ENSGT00950000183055.a.a.i #23	ENSGT00940000159810.a #24	ENSGT00940000160718.a #25	ENSGT00940000158453.a.d #26	ENSGT01050000244955.a.a.h #27	ENSGT00940000159196 #30	ENSGT00940000153981.A.j #31
P. kingsleyae	MODERN SPECIES	216														ENSPKIG00000019619	RBM26 (ENSPKIG00000019670) #21	ndfip2 (ENSPKIG00000019776) #22	ENSPKIG00000019791	NPBWR2 (ENSPKIG00000019808)	oprl1 (ENSPKIG00000019824)	RGS19 (ENSPKIG00000019849)	tcea2 (ENSPKIG00000019874)	ENSPKIG00000019890	ENSPKIG00000019898	XKR7 (ENSPKIG00000019907)	CCM2L (ENSPKIG00000019924)	CABLES2 (ENSPKIG00000019943)	ENSPKIG00000019985	MOV10 (ENSPKIG00000019999)	st7l (ENSPKIG00000020033)	ENSPKIG00000020061	CTTNBP2NL (ENSPKIG00000020094)
Asian bonytongue	MODERN SPECIES	3	MSL3 (ENSSFOG00015004855)	ARHGAP6 (ENSSFOG00015004887)	MID1 (ENSSFOG00015004923)	cog3 (ENSSFOG00015004966)	EDNRB (ENSSFOG00015031122) #18	ENSSFOG00015005066	sugt1 (ENSSFOG00015005071)	PCDH8 (ENSSFOG00015005139)	pcdh17 (ENSSFOG00015005157)	tdrd3 (ENSSFOG00015005175)	PCDH20 (ENSSFOG00015005211)	PCDH9 (ENSSFOG00015005219)	POU4F1 (ENSSFOG00015029288) #19	OBI1 (ENSSFOG00015005285) #20	RBM26 (ENSSFOG00015005311) #21	ndfip2 (ENSSFOG00015005371) #22	spry2 (ENSSFOG00015005431) #23	ENSSFOG00015028743	SLITRK1 (ENSSFOG00015005449) #24	slitrk6 (ENSSFOG00015005456) #25	SLITRK5 (ENSSFOG00015005466) #26	gpc5a (ENSSFOG00015005481) #27	gpc6b (ENSSFOG00015005580) ##28	TGDS (ENSSFOG00015005632) #30	GPR180 (ENSSFOG00015005678) #31	sox21b (ENSSFOG00015026500) #32	abcc4 (ENSSFOG00015005710) #33	ENSSFOG00015005802	ENSSFOG00015024707	CLDN10 (ENSSFOG00015005845) #34	UGGT2 (ENSSFOG00015005919) #37
Spotted gar	MODERN SPECIES	655	sox21b (ENSLOCG00000017783) #32	GPR180 (ENSLOCG00000004885) #31	dct (ENSLOCG00000004857) #29	gpc6b (ENSLOCG00000004830) #28	gpc5a (ENSLOCG00000004783) #27	ENSLOCG00000004771	SLITRK5 (ENSLOCG00000017782) #26	diaph3 (ENSLOCG00000004676)	tdrd3 (ENSLOCG00000004652)	PCDH20 (ENSLOCG00000017781)	ENSLOCG00000017780	PCDH9 (ENSLOCG00000004624)	pou4f1 (ENSLOCG00000004613) #19	OBI1 (ENSLOCG00000004597) #20	RBM26 (ENSLOCG00000004557) #21	ndfip2 (ENSLOCG00000004539) #22	spry2 (ENSLOCG00000017779) #23	SLITRK1 (ENSLOCG00000017778) #24	slitrk6 (ENSLOCG00000017777) #25	ENSLOCG00000004519	CFAP91 (ENSLOCG00000004498)	nr1i2 (ENSLOCG00000004476)	ENSLOCG00000004420	ENSLOCG00000004386	ENSLOCG00000004373	selenoh (ENSLOCG00000004349)	ENSLOCG00000004330	ENSLOCG00000004314	ENSLOCG00000004293	ENSLOCG00000004258	ENSLOCG00000004243
Reedfish	MODERN SPECIES	12	COMMD6 (ENSECRG00000017746)	uchl3 (ENSECRG00000017705) #7	ENSECRG00000017685 #8	LMO7 (ENSECRG00000017609) #8	kctd12.1 (ENSECRG00000017567) #9	acod1 (ENSECRG00000017453) #10	zgc:162944 (ENSECRG00000017411)	CLN5 (ENSECRG00000017390) #11	fbxl3a (ENSECRG00000017367) #13	mycbp2 (ENSECRG00000016004) #14	slain1a (ENSECRG00000015722) #17	ednrba (ENSECRG00000015679) #18	pou4f1 (ENSECRG00000015648) #19	OBI1 (ENSECRG00000015618) #20	RBM26 (ENSECRG00000015518) #21	ndfip2 (ENSECRG00000015485) #22	spry2 (ENSECRG00000015466) #23	ENSECRG00000015442	SLITRK1 (ENSECRG00000015432) #24	ENSECRG00000015397	slitrk6 (ENSECRG00000015378) #25	ENSECRG00000015304	SLITRK5 (ENSECRG00000015262) #26	SLITRK5 (ENSECRG00000015244) #26	ENSECRG00000015224	ENSECRG00000015137	ENSECRG00000015118	gpc5a (ENSECRG00000015102) #27	ENSECRG00000015072	GPC6 (ENSECRG00000015037) #28	ENSECRG00000015012 #28
Elephant shark	MODERN SPECIES	1582												ednrba (ENSCMIG00000011810) #18	pou4f1 (ENSCMIG00000011790) #19	OBI1 (ENSCMIG00000011789) #20	RBM26 (ENSCMIG00000011485) #21	ndfip2 (ENSCMIG00000011346) #22	spry2 (ENSCMIG00000011339) #23	SLITRK1 (ENSCMIG00000011337) #24	slitrk6 (ENSCMIG00000011335) #25	ENSCMIG00000011333	ENSCMIG00000011331	rab8a (ENSCMIG00000011324)	ENSCMIG00000011319	ENSCMIG00000011308	NIM1K (ENSCMIG00000011278)	ENSCMIG00000011268	ENSCMIG00000011261	ENSCMIG00000011254
Gnathostomata	ANCESTRAL SPECIES	1606																ENSGT00390000012721.a ##22	ENSGT00940000160557
Elephant shark	DUPLICATION
Elephant shark	MODERN SPECIES	1577	ENSCMIG00000017309	ENSCMIG00000017313	ENSCMIG00000017315	ENSCMIG00000017318	DIAPH1 (ENSCMIG00000017338)	ENSCMIG00000017389	ENSCMIG00000017392	ENSCMIG00000017400	ENSCMIG00000017406	p4ha2 (ENSCMIG00000017511)	ENSCMIG00000017824	RAD50 (ENSCMIG00000017859)	kif3a (ENSCMIG00000017930)	pou4f3 (ENSCMIG00000018027)	RBM27 (ENSCMIG00000000206) ##21	ndfip1l (ENSCMIG00000000310) ##22	fgf1 (ENSCMIG00000000315)	ENSCMIG00000000373	ENSCMIG00000000380	ENSCMIG00000000388	GM2A (ENSCMIG00000000397)	SLC36A1 (ENSCMIG00000000413)	ENSCMIG00000000460	FAT2 (ENSCMIG00000000471)	ENSCMIG00000000490	sparc (ENSCMIG00000000506)	g3bp1 (ENSCMIG00000000548)	glra1 (ENSCMIG00000000617)	GRXCR2 (ENSCMIG00000000746)	ENSCMIG00000000757	ENSCMIG00000000760
Elephant shark	MODERN SPECIES	1581	ENSCMIG00000011079	grid2 (ENSCMIG00000011089)	CCSER1 (ENSCMIG00000011104)	MMRN1 (ENSCMIG00000011115)	SNCA (ENSCMIG00000011119)	FAM13A (ENSCMIG00000011140)	herc3 (ENSCMIG00000011166)	ENSCMIG00000011196	ENSCMIG00000011198	ENSCMIG00000011202	ENSCMIG00000011208	ENSCMIG00000011219	ENSCMIG00000011228	ENSCMIG00000011231	ENSCMIG00000011234	ENSCMIG00000011240 ##22	spry1 (ENSCMIG00000011247) ##23
Euteleostomi	ANCESTRAL SPECIES	143						ENSGT00940000162679	ENSGT00940000156068	ENSGT00950000183003.a.a.a.a.b	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00530000063825.A.d	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880
Actinopterygii	ANCESTRAL SPECIES	34	ENSGT00940000156685	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000162679	ENSGT00940000156068	ENSGT00950000183003.a.a.a.a.b	ENSGT00940000160656	ENSGT00940000159784	ENSGT00390000004029	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00530000063825.A.d	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000156386	ENSGT00390000018781
Neopterygii	ANCESTRAL SPECIES	24	ENSGT00940000156685	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b	ENSGT00940000160656	ENSGT00940000159784	ENSGT00390000004029	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00530000063825.A.d	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000156386	ENSGT00390000018781	ENSGT00940000157695
Osteoglossocephalai	ANCESTRAL SPECIES	195					ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b	ENSGT00940000160656	ENSGT00940000159784	ENSGT00390000004029	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00390000014316.c.b	ENSGT00530000063825.A.d	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.a	ENSGT00950000182810.A.b	ENSGT00940000160067	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000156386
Osteoglossiformes	ANCESTRAL SPECIES	23	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685.y.a	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000162679.c	ENSGT00940000156068.j	ENSGT00950000183003.a.a.a.a.b.e	ENSGT00940000160656.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00950000182974.a.a.b.j	ENSGT00940000156067.g.a	ENSGT00390000014316.c.b	ENSGT00530000063825.A.d	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.o	ENSGT00940000156385.a	ENSGT00940000153168.C.a.a	ENSGT00940000156071.a	ENSGT00950000182810.A.b	ENSGT00940000160067	ENSGT00390000012163	ENSGT00510000046929.b.h ##21	ENSGT00940000160880.c	ENSGT00940000156386.d	ENSGT00940000155857.f.a	ENSGT00940000159824	ENSGT00390000000483.a.a.f
P. kingsleyae	DUPLICATION
P. kingsleyae	MODERN SPECIES	329								CCNI2 (ENSPKIG00000024127)	septin8a (ENSPKIG00000024108)	SOWAHA (ENSPKIG00000024141)	ENSPKIG00000024154	AFF4 (ENSPKIG00000024249)	zcchc10 (ENSPKIG00000024279)	HSPA4 (ENSPKIG00000024298)	rnf14 (ENSPKIG00000024337)	NDFIP1 (ENSPKIG00000024354) ##22	spry4 (ENSPKIG00000024363) ##23	ARHGAP26 (ENSPKIG00000024432)	NR3C1 (ENSPKIG00000024489)	kctd16b (ENSPKIG00000024508)	GRXCR2 (ENSPKIG00000024526)	PLAC8L1 (ENSPKIG00000024535)	RBM27 (ENSPKIG00000024548) ##21	POU4F3 (ENSPKIG00000024572)	kif3a (ENSPKIG00000024590)	RAD50 (ENSPKIG00000024646)	drd1b (ENSPKIG00000024692)
P. kingsleyae	MODERN SPECIES	442				nudcd2 (ENSPKIG00000024450)	ccng1 (ENSPKIG00000024439)	CCNI2 (ENSPKIG00000024425)	septin8b (ENSPKIG00000024403)	SOWAHA (ENSPKIG00000024393)	ENSPKIG00000024384	gdf9 (ENSPKIG00000024372)	uqcrq (ENSPKIG00000024365)	AFF4 (ENSPKIG00000024325)	HSPA4 (ENSPKIG00000024274)	gnpda1 (ENSPKIG00000024252)	endou2 (ENSPKIG00000024238)	ndfip1l (ENSPKIG00000024194) ##22	spry4 (ENSPKIG00000024184) ##23	fgf1b (ENSPKIG00000024173)	ARHGAP26 (ENSPKIG00000024147)	NR3C1 (ENSPKIG00000024131)	yipf5 (ENSPKIG00000024119)	kctd16a (ENSPKIG00000024111)
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	19	stk10 (ENSSFOG00015001218)	SH3PXD2B (ENSSFOG00015001146)	ENSSFOG00015001114	gabrb2a (ENSSFOG00015001078)	GABRA6 (ENSSFOG00015001032)	gabra1 (ENSSFOG00015000992)	GABRG2 (ENSSFOG00015002914)	CCNI2 (ENSSFOG00015000927)	septin8a (ENSSFOG00015000919)	SOWAHA (ENSSFOG00015031119)	ENSSFOG00015000893	AFF4 (ENSSFOG00015000839)	zcchc10 (ENSSFOG00015000832)	hspa4b (ENSSFOG00015000742)	rnf14 (ENSSFOG00015000731)	ndfip1l (ENSSFOG00015031123) ##22	spry4 (ENSSFOG00015029236) ##23	ARHGAP26 (ENSSFOG00015000688)	NR3C1 (ENSSFOG00015000680)	kctd16b (ENSSFOG00015000640)	GRXCR2 (ENSSFOG00015029720)	ENSSFOG00015000620	POU4F3 (ENSSFOG00015000571)	kif3a (ENSSFOG00015000552)	RAD50 (ENSSFOG00015000414)	drd1b (ENSSFOG00015000350)	nsg2 (ENSSFOG00015000318)	CPEB4 (ENSSFOG00015000264)	bod1 (ENSSFOG00015000254)	stc2a (ENSSFOG00015000247)	CREBRF (ENSSFOG00015000199)
Asian bonytongue	MODERN SPECIES	4	gabra6a (ENSSFOG00015000780)	gabra1 (ENSSFOG00015000829)	GABRG2 (ENSSFOG00015000943)	nudcd2 (ENSSFOG00015032834)	ccng1 (ENSSFOG00015024879)	CCNI2 (ENSSFOG00015018827)	septin8b (ENSSFOG00015018786)	ENSSFOG00015026126	ENSSFOG00015018754	gdf9 (ENSSFOG00015018741)	uqcrq (ENSSFOG00015027428)	AFF4 (ENSSFOG00015018646)	HSPA4 (ENSSFOG00015018589)	gnpda1 (ENSSFOG00015018565)	endou2 (ENSSFOG00015018551)	ndfip1 (ENSSFOG00015025334) ##22	spry4 (ENSSFOG00015018544) ##23	ENSSFOG00015018500	ARHGAP26 (ENSSFOG00015018403)	nr3c1 (ENSSFOG00015018348)	yipf5 (ENSSFOG00015031270)	kctd16a (ENSSFOG00015018302)	PRELID2 (ENSSFOG00015018273)	SH3RF2 (ENSSFOG00015018215)	LARS1 (ENSSFOG00015018117)	RBM27 (ENSSFOG00015018009) ##21	pou4f3 (ENSSFOG00015017993)	DRD1 (ENSSFOG00015017983)	MSX2 (ENSSFOG00015025283)	NSG2 (ENSSFOG00015017958)	CPEB4 (ENSSFOG00015017925)
Clupeocephala	ANCESTRAL SPECIES	11	ENSGT00940000158396	ENSGT00390000015484.j	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B	ENSGT00390000000483.a.a
Euteleosteomorpha	DUPLICATION
Euteleosteomorpha	DUPLICATION
Euteleosteomorpha	ANCESTRAL SPECIES	25	ENSGT00940000158396	ENSGT00390000015484.j	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B	ENSGT00390000000483.a.a
Acanthomorphata	ANCESTRAL SPECIES	10	ENSGT00940000158396	ENSGT00390000015484.j	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B	ENSGT00390000000483.a.a
Euacanthomorphacea	ANCESTRAL SPECIES	20	ENSGT00940000158396	ENSGT00390000015484.j	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B	ENSGT00390000000483.a.a
Pinecone sodierfish	MODERN SPECIES	5	SH3PXD2B (ENSMMDG00005005699)	ENSMMDG00005005703	GABRB2 (ENSMMDG00005005706)	GABRA6 (ENSMMDG00005005759)	gabra1 (ENSMMDG00005005810)	GABRG2 (ENSMMDG00005006065)	CCNI2 (ENSMMDG00005006401)	septin8a (ENSMMDG00005006421)	SOWAHA (ENSMMDG00005006545)	ENSMMDG00005006546	AFF4 (ENSMMDG00005006548)	zcchc10 (ENSMMDG00005006555)	hspa4a (ENSMMDG00005006586)	rnf14 (ENSMMDG00005007987)	endou2 (ENSMMDG00005007993)	ndfip1l (ENSMMDG00005007999) ##22	spry4 (ENSMMDG00005008005) ##23	fgf1b (ENSMMDG00005008008)	ARHGAP26 (ENSMMDG00005008047)	NR3C1 (ENSMMDG00005008492)	yipf5 (ENSMMDG00005008496)	kctd16b (ENSMMDG00005008499)	ENSMMDG00005008503	GRXCR2 (ENSMMDG00005008506)	PLAC8L1 (ENSMMDG00005008509)	LARS1 (ENSMMDG00005008561)	RBM27 (ENSMMDG00005011263) ##21	pou4f3 (ENSMMDG00005011267)	RAD50 (ENSMMDG00005011294)	ENSMMDG00005012469	drd1b (ENSMMDG00005012470)
Percomorphaceae	ANCESTRAL SPECIES	9	ENSGT00940000182424	ENSGT00940000164327.a	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B	ENSGT00390000000483.a.a
Tiger tail seahorse	MODERN SPECIES	214	ENSHCOG00000016740	ins (ENSHCOG00000016732)	GABRB2 (ENSHCOG00000016727)	GABRA6 (ENSHCOG00000016715)	gabra1 (ENSHCOG00000000467)	GABRG2 (ENSHCOG00000016377)	CCNI2 (ENSHCOG00000016350)	septin8a (ENSHCOG00000016344)	SOWAHA (ENSHCOG00000016320)	ENSHCOG00000016300	AFF4 (ENSHCOG00000016280)	zcchc10 (ENSHCOG00000016175)	hspa4a (ENSHCOG00000016162)	rnf14 (ENSHCOG00000016085)	endou2 (ENSHCOG00000016078)	ndfip1l (ENSHCOG00000016063) ##22	spry4 (ENSHCOG00000016045) ##23	ENSHCOG00000016029	ARHGAP26 (ENSHCOG00000015763)	ENSHCOG00000015715	NR3C1 (ENSHCOG00000015703)	yipf5 (ENSHCOG00000015662)	kctd16b (ENSHCOG00000015646)
Percomorphaceae_B	ANCESTRAL SPECIES	10	ENSGT00940000158396	ENSGT00390000015484.j	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000176998	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B
Ovalentaria	ANCESTRAL SPECIES	11	ENSGT00940000158396	ENSGT00390000015484.j	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000176998	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B
Atherinomorphae	ANCESTRAL SPECIES	14	ENSGT00940000158396	ENSGT00940000164327.a	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000176998	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B
Cyprinodontiformes	ANCESTRAL SPECIES	11	ENSGT00940000156818	ENSGT00940000158396	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000176998	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B
Aplocheiloidei	ANCESTRAL SPECIES	35	ENSGT00940000158396	ENSGT00940000177067	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00940000168656	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000176998	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B
Turquoise killifish	MODERN SPECIES	1620	COX7B2 (ENSNFUG00015012932)	PGRMC1 (ENSNFUG00015012937)	RAB24 (ENSNFUG00015012948)	ENSNFUG00015013052	fgfr4 (ENSNFUG00015015879)	ZNF346 (ENSNFUG00015024210)	zgc:56585 (ENSNFUG00015024214)	LARP1 (ENSNFUG00015024238)	C21H5ORF4 (ENSNFUG00015024469)	H2AFY (ENSNFUG00015024478)	pitx1 (ENSNFUG00015024490)	ENSNFUG00015024502	hspa4a (ENSNFUG00015024519)	RNF14 (ENSNFUG00015024636)	endou2 (ENSNFUG00015024637)	ndfip1l (ENSNFUG00015024638) ##22	ENSNFUG00015024641	SPRY4 (ENSNFUG00015024644) ##23	ENSNFUG00015024647	ARHGAP26 (ENSNFUG00015024664)	NR3C1 (ENSNFUG00015024817)	YIPF5 (ENSNFUG00015024825)	kctd16b (ENSNFUG00015024828)	GRXCR2 (ENSNFUG00015024830)	ENSNFUG00015024833	PLAC8L1 (ENSNFUG00015024837)	LARS1 (ENSNFUG00015004999)	RBM27 (ENSNFUG00015006341) ##21	POU4F3 (ENSNFUG00015006394)	ENSNFUG00015006399	RAD50 (ENSNFUG00015006436)
Mangrove rivulus	MODERN SPECIES	58	SH3PXD2B (ENSKMAG00000011254)	ENSKMAG00000011122	GABRB2 (ENSKMAG00000011052)	GABRA6 (ENSKMAG00000011013)	gabra1 (ENSKMAG00000010965)	GABRG2 (ENSKMAG00000010884)	CCNI2 (ENSKMAG00000010841)	septin8a (ENSKMAG00000010785)	ENSKMAG00000010558	ENSKMAG00000010515	AFF4 (ENSKMAG00000010443)	ENSKMAG00000010417	hspa4a (ENSKMAG00000010299)	rnf14 (ENSKMAG00000010260)	endou2 (ENSKMAG00000010243)	ndfip1l (ENSKMAG00000010223) ##22	spry4 (ENSKMAG00000010183) ##23	fgf1b (ENSKMAG00000010169)	ARHGAP26 (ENSKMAG00000010140)	NR3C1 (ENSKMAG00000010085)	yipf5 (ENSKMAG00000010061)	kctd16b (ENSKMAG00000010051)	GRXCR2 (ENSKMAG00000010041)	PLAC8L1 (ENSKMAG00000010005)	LARS1 (ENSKMAG00000009903)	RBM27 (ENSKMAG00000009801) ##21	pou4f3 (ENSKMAG00000009766)	RAD50 (ENSKMAG00000009633)	drd1b (ENSKMAG00000009582)	msx2b (ENSKMAG00000009572)	nsg2 (ENSKMAG00000009551)
Cyprinodontoidei	ANCESTRAL SPECIES	5	ENSGT00940000156818	ENSGT00940000158396	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000176998	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B
Poeciliinae	ANCESTRAL SPECIES	17	ENSGT00940000156818	ENSGT00940000158396.d	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000176998	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B
Poecilia	ANCESTRAL SPECIES	7	ENSGT00940000156818	ENSGT00940000158396.d	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000176998	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B
NAME_6	ANCESTRAL SPECIES	1	ENSGT00940000156818	ENSGT00940000158396.d	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000176998	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B
Sailfin molly	MODERN SPECIES	297			GABRB2 (ENSPLAG00000001753)	GABRA6 (ENSPLAG00000001759)	gabra1 (ENSPLAG00000001766)	GABRG2 (ENSPLAG00000001776)	ENSPLAG00000001793	SOWAHA (ENSPLAG00000001803)	septin8a (ENSPLAG00000001815)	ENSPLAG00000001824	AFF4 (ENSPLAG00000001837)	zcchc10 (ENSPLAG00000001841)	hspa4a (ENSPLAG00000001851)	rnf14 (ENSPLAG00000001863)	endou2 (ENSPLAG00000001874)	ndfip1l (ENSPLAG00000001887) ##22
Amazon molly	MODERN SPECIES	383	stk10 (ENSPFOG00000008737)	SH3PXD2B (ENSPFOG00000008570)	GABRB2 (ENSPFOG00000008303)	GABRA6 (ENSPFOG00000008151)	gabra1 (ENSPFOG00000007969)	GABRG2 (ENSPFOG00000007767)	CCNI2 (ENSPFOG00000007711)	septin8a (ENSPFOG00000007433)	ENSPFOG00000020752	ENSPFOG00000007375	AFF4 (ENSPFOG00000007079)	zcchc10 (ENSPFOG00000007040)	hspa4a (ENSPFOG00000006901)	rnf14 (ENSPFOG00000006823)	endou2 (ENSPFOG00000006713)	ndfip1l (ENSPFOG00000006628) ##22	spry4 (ENSPFOG00000023174) ##23	spry4 (ENSPFOG00000023649) ##23	ENSPFOG00000006585	ARHGAP26 (ENSPFOG00000006010)	NR3C1 (ENSPFOG00000005866)	yipf5 (ENSPFOG00000005795)	kctd16b (ENSPFOG00000005777)	GRXCR2 (ENSPFOG00000005679)
Guppy	MODERN SPECIES	444	stk10 (ENSPREG00000004633)	SH3PXD2B (ENSPREG00000004867)	GABRB2 (ENSPREG00000005004)	GABRA6 (ENSPREG00000005046)	gabra1 (ENSPREG00000005068)	GABRG2 (ENSPREG00000005126)	CCNI2 (ENSPREG00000005203)	septin8a (ENSPREG00000005238)	ENSPREG00000005270	ENSPREG00000005274	AFF4 (ENSPREG00000005287)	zcchc10 (ENSPREG00000005328)	hspa4a (ENSPREG00000005344)	rnf14 (ENSPREG00000005379)	endou2 (ENSPREG00000005404)	ndfip1l (ENSPREG00000005437) ##22	spry4 (ENSPREG00000005469) ##23	ENSPREG00000005482	ARHGAP26 (ENSPREG00000005509)	NR3C1 (ENSPREG00000005578)	yipf5 (ENSPREG00000005606)	kctd16b (ENSPREG00000005626)	GRXCR2 (ENSPREG00000005637)	PLAC8L1 (ENSPREG00000005648)	LARS1 (ENSPREG00000005668)	RBM27 (ENSPREG00000005827) ##21	pou4f3 (ENSPREG00000005851)	RAD50 (ENSPREG00000005887)	drd1b (ENSPREG00000006121)	msx2b (ENSPREG00000006136)	nsg2 (ENSPREG00000006151)
Platyfish	MODERN SPECIES	2	stk10 (ENSXMAG00000012460)	SH3PXD2B (ENSXMAG00000026895)	GABRB2 (ENSXMAG00000012500)	GABRA6 (ENSXMAG00000012573)	gabra1 (ENSXMAG00000012611)	GABRG2 (ENSXMAG00000001711)	CCNI2 (ENSXMAG00000001709)	septin8a (ENSXMAG00000001689)	SOWAHA (ENSXMAG00000023309)	ENSXMAG00000001683	AFF4 (ENSXMAG00000001642)	zcchc10 (ENSXMAG00000025729)	hspa4a (ENSXMAG00000001608)	rnf14 (ENSXMAG00000001585)	endou2 (ENSXMAG00000001569)	ndfip1l (ENSXMAG00000029155) ##22	spry4 (ENSXMAG00000029964) ##23	ENSXMAG00000001555	ARHGAP26 (ENSXMAG00000001526)	NR3C1 (ENSXMAG00000001522)	yipf5 (ENSXMAG00000001514)	kctd16b (ENSXMAG00000001512)	GRXCR2 (ENSXMAG00000001509)	PLAC8L1 (ENSXMAG00000028460)	LARS1 (ENSXMAG00000001454)	RBM27 (ENSXMAG00000001413) ##21	pou4f3 (ENSXMAG00000028993)	pou4f3 (ENSXMAG00000023685)	RAD50 (ENSXMAG00000001353)	drd1b (ENSXMAG00000020293)	msx2b (ENSXMAG00000025273)
NAME_4	ANCESTRAL SPECIES	12	ENSGT00940000156818	ENSGT00940000158396	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000176998	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B
Sheepshead minnow	MODERN SPECIES	148	stk10 (ENSCVAG00000004785)	SH3PXD2B (ENSCVAG00000004903)	GABRB2 (ENSCVAG00000004934)	GABRA6 (ENSCVAG00000000733)	gabra1 (ENSCVAG00000005057)	GABRG2 (ENSCVAG00000005084)	CCNI2 (ENSCVAG00000005100)	septin8a (ENSCVAG00000005141)	ENSCVAG00000005161	ENSCVAG00000005177	AFF4 (ENSCVAG00000005218)	zcchc10 (ENSCVAG00000005225)	hspa4a (ENSCVAG00000000148)	rnf14 (ENSCVAG00000005340)	endou2 (ENSCVAG00000005358)	ndfip1l (ENSCVAG00000005368) ##22	spry4 (ENSCVAG00000005371) ##23	ENSCVAG00000005377
Mummichog	MODERN SPECIES	2361				gabra1 (ENSFHEG00000004328)	GABRG2 (ENSFHEG00000004369)	ENSFHEG00000004398	CCNI2 (ENSFHEG00000004412)	septin8a (ENSFHEG00000004452)	SOWAHA (ENSFHEG00000004469)	ENSFHEG00000004475	AFF4 (ENSFHEG00000004526)	zcchc10 (ENSFHEG00000004550)	hspa4a (ENSFHEG00000004628)	rnf14 (ENSFHEG00000004644)	endou2 (ENSFHEG00000004652)	ndfip1l (ENSFHEG00000004674) ##22	spry4 (ENSFHEG00000004686) ##23	ENSFHEG00000004700	fgf1b (ENSFHEG00000004722)	ARHGAP26 (ENSFHEG00000004749)	NR3C1 (ENSFHEG00000004809)	yipf5 (ENSFHEG00000004828)	kctd16b (ENSFHEG00000004839)
Oryzias	ANCESTRAL SPECIES	14	ENSGT00940000156818	ENSGT00940000158396	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B	ENSGT00390000000483.a.a
Oryzias_b	ANCESTRAL SPECIES	13	ENSGT00940000156818	ENSGT00940000158396	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B	ENSGT00390000000483.a.a
Indian medaka	MODERN SPECIES	4	SH3PXD2B (ENSOMEG00000004742)	ins (ENSOMEG00000004777)	GABRB2 (ENSOMEG00000004814)	GABRA6 (ENSOMEG00000004845)	gabra1 (ENSOMEG00000004870)	GABRG2 (ENSOMEG00000004910)	CCNI2 (ENSOMEG00000004930)	septin8a (ENSOMEG00000004959)	ENSOMEG00000000109	ENSOMEG00000005013	AFF4 (ENSOMEG00000005078)	zcchc10 (ENSOMEG00000005102)	hspa4a (ENSOMEG00000005193)	rnf14 (ENSOMEG00000005243)	endou2 (ENSOMEG00000005264)	ndfip1l (ENSOMEG00000005304) ##22	spry4 (ENSOMEG00000005320) ##23	ENSOMEG00000005336	ARHGAP26 (ENSOMEG00000000119)	NR3C1 (ENSOMEG00000005484)	yipf5 (ENSOMEG00000005512)	kctd16b (ENSOMEG00000005525)	GRXCR2 (ENSOMEG00000005551)	PLAC8L1 (ENSOMEG00000005569)	LARS1 (ENSOMEG00000005677)	RBM27 (ENSOMEG00000005785) ##21	pou4f3 (ENSOMEG00000005808)	RAD50 (ENSOMEG00000005935)	drd1b (ENSOMEG00000005994)	msx2b (ENSOMEG00000006003)	nsg2 (ENSOMEG00000006017)
Javanese ricefish	MODERN SPECIES	5	GABRB2 (ENSOJAG00000002595)	GABRA6 (ENSOJAG00000002476)	gabra1 (ENSOJAG00000002418)	GABRG2 (ENSOJAG00000001922)	CCNI2 (ENSOJAG00000001727)	septin8a (ENSOJAG00000015153)	SOWAHA (ENSOJAG00000015024)	ENSOJAG00000015017	ENSOJAG00000014998	ENSOJAG00000014993	AFF4 (ENSOJAG00000014976)	ENSOJAG00000014970	hspa4a (ENSOJAG00000014533)	rnf14 (ENSOJAG00000014491)	endou2 (ENSOJAG00000014466)	ndfip1l (ENSOJAG00000014339) ##22	spry4 (ENSOJAG00000014322) ##23	ENSOJAG00000014311	ARHGAP26 (ENSOJAG00000013998)	NR3C1 (ENSOJAG00000013765)	yipf5 (ENSOJAG00000013710)	kctd16b (ENSOJAG00000013698)	GRXCR2 (ENSOJAG00000013688)	PLAC8L1 (ENSOJAG00000013679)	LARS1 (ENSOJAG00000012350)	RBM27 (ENSOJAG00000012123) ##21	pou4f3 (ENSOJAG00000012111)	RAD50 (ENSOJAG00000011480)	drd1b (ENSOJAG00000011402)	msx2b (ENSOJAG00000011395)	nsg2 (ENSOJAG00000011373)
Oryzias_a	ANCESTRAL SPECIES	2	ENSGT00940000156818	ENSGT00940000158396	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00940000168656	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B	ENSGT00390000000483.a.a
Chinese medaka	MODERN SPECIES	365													rnf14 (ENSOSIG00000005149)	HSPA4 (ENSOSIG00000005190)	endou2 (ENSOSIG00000007095)	ndfip1l (ENSOSIG00000007100) ##22	spry4 (ENSOSIG00000007440) ##23	fgf1b (ENSOSIG00000007442)	ARHGAP26 (ENSOSIG00000007499)	NR3C1 (ENSOSIG00000014612)	yipf5 (ENSOSIG00000014643)	kctd16b (ENSOSIG00000014647)
Japanese Medaka HdrR	MODERN SPECIES	5	ENSORLG00000027283	ENSORLG00000023683	GABRB2 (ENSORLG00000018987)	GABRA6 (ENSORLG00000018969)	gabra1 (ENSORLG00000027019)	GABRG2 (ENSORLG00000001267)	CCNI2 (ENSORLG00000001274)	septin8a (ENSORLG00000001313)	ENSORLG00000028838	ENSORLG00000030255	AFF4 (ENSORLG00000001361)	ENSORLG00000001372	hspa4a (ENSORLG00000001448)	rnf14 (ENSORLG00000001462)	endou2 (ENSORLG00000001471)	ndfip1l (ENSORLG00000001479) ##22	spry4 (ENSORLG00000001490) ##23	ENSORLG00000001499	ARHGAP26 (ENSORLG00000001552)	NR3C1 (ENSORLG00000001565)	yipf5 (ENSORLG00000001576)	kctd16b (ENSORLG00000001580)	GRXCR2 (ENSORLG00000001588)	PLAC8L1 (ENSORLG00000026879)	LARS1 (ENSORLG00000001622)	RBM27 (ENSORLG00000001645) ##21	pou4f3 (ENSORLG00000001657)	RAD50 (ENSORLG00000001678)	drd1b (ENSORLG00000001681)	ENSORLG00000026903	nsg2 (ENSORLG00000026648)
Ovalentaria_B	ANCESTRAL SPECIES	16	ENSGT00940000158396	ENSGT00390000015484.j	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000176998	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B
Pomacentridae	ANCESTRAL SPECIES	10	ENSGT00390000015484.j	ENSGT00940000177067	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000176998	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B
Pomacentridae_A	ANCESTRAL SPECIES	3	ENSGT00390000015484.j	ENSGT00940000177067	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00940000168656	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000176998	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B
Amphiprion	ANCESTRAL SPECIES	3	ENSGT00390000015484.j	ENSGT00940000177067	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00940000168656	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000176998	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B
Clown anemonefish	MODERN SPECIES	1836							CCNI2 (ENSAOCG00000008527)	septin8a (ENSAOCG00000008571)	ENSAOCG00000008521	ENSAOCG00000008502	AFF4 (ENSAOCG00000008476)	ENSAOCG00000008437	hspa4a (ENSAOCG00000008412)	rnf14 (ENSAOCG00000008355)	endou2 (ENSAOCG00000008346)	ndfip1l (ENSAOCG00000008297) ##22	spry4 (ENSAOCG00000008281) ##23
Orange clownfish	MODERN SPECIES	6	ENSAPEG00000018893	ENSAPEG00000018752	GABRB2 (ENSAPEG00000018559)	GABRA6 (ENSAPEG00000018522)	gabra1 (ENSAPEG00000018467)	GABRG2 (ENSAPEG00000018442)	CCNI2 (ENSAPEG00000018394)	septin8a (ENSAPEG00000018357)	SOWAHA (ENSAPEG00000018334)	ENSAPEG00000018318	AFF4 (ENSAPEG00000018275)	ENSAPEG00000018258	hspa4a (ENSAPEG00000018179)	rnf14 (ENSAPEG00000018135)	endou2 (ENSAPEG00000018083)	ndfip1l (ENSAPEG00000018059) ##22	spry4 (ENSAPEG00000018043) ##23	ENSAPEG00000018031	ARHGAP26 (ENSAPEG00000017953)	NR3C1 (ENSAPEG00000017923)	yipf5 (ENSAPEG00000017896)	kctd16b (ENSAPEG00000017863)	GRXCR2 (ENSAPEG00000017834)	PLAC8L1 (ENSAPEG00000017823)	LARS1 (ENSAPEG00000017720)	RBM27 (ENSAPEG00000017681) ##21	pou4f3 (ENSAPEG00000017661)	ENSAPEG00000017640	RAD50 (ENSAPEG00000017535)	drd1b (ENSAPEG00000017467)	msx2b (ENSAPEG00000017453)
Spiny chromis	MODERN SPECIES	296							CCNI2 (ENSAPOG00000006004)	septin8a (ENSAPOG00000006030)	SOWAHA (ENSAPOG00000006036)	ENSAPOG00000006054	AFF4 (ENSAPOG00000006096)	ENSAPOG00000006138	hspa4a (ENSAPOG00000006201)	rnf14 (ENSAPOG00000006225)	endou2 (ENSAPOG00000006250)	ndfip1l (ENSAPOG00000006306) ##22	spry4 (ENSAPOG00000006344) ##23	fgf1b (ENSAPOG00000006357)	ARHGAP26 (ENSAPOG00000006376)
Bicolor damselfish	MODERN SPECIES	264	ENSSPAG00000012630	GABRB2 (ENSSPAG00000012598)	GABRA6 (ENSSPAG00000012576)	gabra1 (ENSSPAG00000012551)	GABRG2 (ENSSPAG00000012522)	CCNI2 (ENSSPAG00000012486)	septin8a (ENSSPAG00000012437)	ENSSPAG00000012417	ENSSPAG00000012399	AFF4 (ENSSPAG00000012370)	ENSSPAG00000012349	zcchc10 (ENSSPAG00000012331)	hspa4a (ENSSPAG00000012268)	rnf14 (ENSSPAG00000012229)	endou2 (ENSSPAG00000012174)	ndfip1l (ENSSPAG00000012139) ##22	spry4 (ENSSPAG00000012134) ##23	fgf1b (ENSSPAG00000012115)	ARHGAP26 (ENSSPAG00000011902)
Cichlidae	ANCESTRAL SPECIES	4	ENSGT00940000158396	ENSGT00390000015484.j	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000176998	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B
Midas cichlid	MODERN SPECIES	469	ENSACIG00000009466	GABRB2 (ENSACIG00000009473)	GABRA6 (ENSACIG00000009502)	gabra1 (ENSACIG00000009534)	GABRG2 (ENSACIG00000009566)	CCNI2 (ENSACIG00000009603)	septin8a (ENSACIG00000009699)	ENSACIG00000010472	ENSACIG00000010486	AFF4 (ENSACIG00000010525)	ENSACIG00000010592	zcchc10 (ENSACIG00000010605)	hspa4a (ENSACIG00000010612)	rnf14 (ENSACIG00000010648)	endou2 (ENSACIG00000010671)	NDFIP1 (ENSACIG00000010692) ##22	spry4 (ENSACIG00000010709) ##23	fgf1b (ENSACIG00000010719)	ARHGAP26 (ENSACIG00000010729)	NR3C1 (ENSACIG00000010799)	yipf5 (ENSACIG00000011102)	kctd16b (ENSACIG00000011116)
Pseudocrenilabrinae	ANCESTRAL SPECIES	14	ENSGT00390000015484.j	ENSGT00990000208311	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000176998.a.a.a	ENSGT00940000176998.a.b	ENSGT00940000176998.b	ENSGT00390000018781
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	22	ENSGT00390000015484.j	ENSGT00990000208311	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000176998.a.a.a	ENSGT00940000176998.a.b	ENSGT00390000018781	ENSGT00940000155857.f.b
Haplochromini	ANCESTRAL SPECIES	8	ENSGT00390000015484.j	ENSGT00990000208311	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000176998.a.a.a	ENSGT00940000176998.a.b	ENSGT00390000018781	ENSGT00940000155857.f.b
Burton s mouthbrooder	MODERN SPECIES	675								CCNI2 (ENSHBUG00000021802)	septin8a (ENSHBUG00000021911)	ENSHBUG00000021938	ENSHBUG00000021962	AFF4 (ENSHBUG00000021987)	ENSHBUG00000021997	hspa4a (ENSHBUG00000022116)	rnf14 (ENSHBUG00000022134)	ndfip1l (ENSHBUG00000022149) ##22	spry4 (ENSHBUG00000022165) ##23	fgf1b (ENSHBUG00000022171)	ARHGAP26 (ENSHBUG00000022295)	nr3c1 (ENSHBUG00000022339)
Haplochromini_A	ANCESTRAL SPECIES	6	ENSGT00940000158396	ENSGT00390000015484.j	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000176998.a.a.a	ENSGT00940000176998.a.b	ENSGT00390000018781	ENSGT00940000155857.f.b
P. nyererei	MODERN SPECIES	321	SH3PXD2B (ENSPNYG00000013756)	ENSPNYG00000013786	GABRB2 (ENSPNYG00000013807)	GABRA6 (ENSPNYG00000013821)	gabra1 (ENSPNYG00000013948)	GABRG2 (ENSPNYG00000014341)	CCNI2 (ENSPNYG00000014693)	septin8a (ENSPNYG00000014720)	ENSPNYG00000014745	ENSPNYG00000014768	AFF4 (ENSPNYG00000014804)	ENSPNYG00000014848	hspa4a (ENSPNYG00000014879)	rnf14 (ENSPNYG00000014948)	endou2 (ENSPNYG00000014962)	ndfip1l (ENSPNYG00000015004) ##22	spry4 (ENSPNYG00000015015) ##23	fgf1b (ENSPNYG00000015037)	ARHGAP26 (ENSPNYG00000015053)	NR3C1 (ENSPNYG00000015102)	yipf5 (ENSPNYG00000015166)	kctd16b (ENSPNYG00000015182)	GRXCR2 (ENSPNYG00000015199)	PLAC8L1 (ENSPNYG00000015218)	LARS1 (ENSPNYG00000015254)	RBM27 (ENSPNYG00000015348) ##21	pou4f3 (ENSPNYG00000015362)	ENSPNYG00000015372	ENSPNYG00000015384	ENSPNYG00000015398	RAD50 (ENSPNYG00000015413)
Haplochromini_B	ANCESTRAL SPECIES	16	ENSGT00940000158396	ENSGT00390000015484.j	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000176998.a.a.a	ENSGT00940000176998.a.b	ENSGT00390000018781	ENSGT00940000155857.f.b
Zebra mbuna	MODERN SPECIES	1092	IRF1 (ENSMZEG00005003899)	ENSMZEG00005003844	ENSMZEG00005003831	fnip1 (ENSMZEG00005003527)	ENSMZEG00005003402	ENSMZEG00005003363	CCNI2 (ENSMZEG00005003334)	septin8a (ENSMZEG00005003308)	ENSMZEG00005003293	ENSMZEG00005003270	AFF4 (ENSMZEG00005003218)	ENSMZEG00005003199	hspa4a (ENSMZEG00005003031)	rnf14 (ENSMZEG00005003001)	endou2 (ENSMZEG00005002993)	ndfip1l (ENSMZEG00005002978) ##22	spry4 (ENSMZEG00005002964) ##23	fgf1b (ENSMZEG00005002955)	ARHGAP26 (ENSMZEG00005002884)	NR3C1 (ENSMZEG00005002837)	yipf5 (ENSMZEG00005002809)	kctd16b (ENSMZEG00005002773)	GRXCR2 (ENSMZEG00005002759)	ENSMZEG00005002751	LARS1 (ENSMZEG00005002662)	RBM27 (ENSMZEG00005002635) ##21	pou4f3 (ENSMZEG00005002620)	ENSMZEG00005002579	ENSMZEG00005002560	RAD50 (ENSMZEG00005002481)	drd1b (ENSMZEG00005002456)
Eastern happy	MODERN SPECIES	1	ENSACLG00000012516	ENSACLG00000012388	GABRB2 (ENSACLG00000012305)	GABRA6 (ENSACLG00000012245)	gabra1 (ENSACLG00000012229)	GABRG2 (ENSACLG00000012156)	CCNI2 (ENSACLG00000012033)	septin8a (ENSACLG00000012018)	ENSACLG00000011984	ENSACLG00000011946	AFF4 (ENSACLG00000011879)	zcchc10 (ENSACLG00000011863)	hspa4a (ENSACLG00000011771)	rnf14 (ENSACLG00000011718)	endou2 (ENSACLG00000011700)	ndfip1l (ENSACLG00000011694) ##22	spry4 (ENSACLG00000011478) ##23	ENSACLG00000011470	ARHGAP26 (ENSACLG00000011418)	NR3C1 (ENSACLG00000011372)	yipf5 (ENSACLG00000011153)	kctd16b (ENSACLG00000011152)	GRXCR2 (ENSACLG00000011061)	PLAC8L1 (ENSACLG00000011049)	LARS1 (ENSACLG00000010881)	RBM27 (ENSACLG00000010782) ##21	pou4f3 (ENSACLG00000010777)	ENSACLG00000010747	ENSACLG00000010633	ENSACLG00000010597	RAD50 (ENSACLG00000010459)
Lyretail cichlid	MODERN SPECIES	297	ENSNBRG00000006599	GABRB2 (ENSNBRG00000006558)	GABRA6 (ENSNBRG00000006521)	gabra1 (ENSNBRG00000006481)	GABRG2 (ENSNBRG00000006435)	CCNI2 (ENSNBRG00000006398)	septin8a (ENSNBRG00000006377)	SOWAHA (ENSNBRG00000006356)	ENSNBRG00000006340	AFF4 (ENSNBRG00000006303)	ENSNBRG00000006285	ENSNBRG00000006271	hspa4a (ENSNBRG00000006219)	rnf14 (ENSNBRG00000006194)	endou2 (ENSNBRG00000006137)	ndfip1l (ENSNBRG00000006121) ##22	spry4 (ENSNBRG00000006099) ##23	fgf1b (ENSNBRG00000006086)	ARHGAP26 (ENSNBRG00000006023)	NR3C1 (ENSNBRG00000005976)	yipf5 (ENSNBRG00000005967)	kctd16b (ENSNBRG00000005936)	GRXCR2 (ENSNBRG00000005914)	PLAC8L1 (ENSNBRG00000005887)	LARS1 (ENSNBRG00000005764)	RBM27 (ENSNBRG00000005739) ##21	pou4f3 (ENSNBRG00000005732)	ENSNBRG00000005720	ENSNBRG00000005689	RAD50 (ENSNBRG00000005598)	drd1b (ENSNBRG00000005539)
Nile tilapia	MODERN SPECIES	1	ENSONIG00000040583	ENSONIG00000032765	GABRB2 (ENSONIG00000043045)	GABRA6 (ENSONIG00000008427)	gabra1 (ENSONIG00000008432)	GABRG2 (ENSONIG00000008436)	CCNI2 (ENSONIG00000008437)	septin8a (ENSONIG00000008438)	ENSONIG00000028267	ENSONIG00000038607	AFF4 (ENSONIG00000008446)	zcchc10 (ENSONIG00000034478)	hspa4a (ENSONIG00000008454)	rnf14 (ENSONIG00000008460)	endou2 (ENSONIG00000008463)	ndfip1l (ENSONIG00000008465) ##22	spry4 (ENSONIG00000031453) ##23	fgf1 (ENSONIG00000034360)	ARHGAP26 (ENSONIG00000008473)	NR3C1 (ENSONIG00000008483)	yipf5 (ENSONIG00000008486)	kctd16b (ENSONIG00000008488)	GRXCR2 (ENSONIG00000008490)	PLAC8L1 (ENSONIG00000033374)	LARS1 (ENSONIG00000008493)	RBM27 (ENSONIG00000008506) ##21	pou4f3 (ENSONIG00000036406)	ENSONIG00000042767	ENSONIG00000036408	ENSONIG00000029234	ENSONIG00000041807
Percomorphaceae_C	ANCESTRAL SPECIES	10	ENSGT00940000158396	ENSGT00390000015484.j	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000176998	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B
Percomorphaceae_D	ANCESTRAL SPECIES	16	ENSGT00940000158396	ENSGT00390000015484.j	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000176998	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B
Anabantaria	ANCESTRAL SPECIES	13	ENSGT00940000158396	ENSGT00390000015484.j	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000176998	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B
Zig-zag eel	MODERN SPECIES	5	ENSMAMG00000024376	GABRB2 (ENSMAMG00000021487)	GABRA6 (ENSMAMG00000021483)	gabra1 (ENSMAMG00000021477)	GABRG2 (ENSMAMG00000021473)	ENSMAMG00000025987	CCNI2 (ENSMAMG00000021468)	septin8a (ENSMAMG00000021464)	ENSMAMG00000021462	ENSMAMG00000021459	AFF4 (ENSMAMG00000021453)	zcchc10 (ENSMAMG00000021448)	hspa4a (ENSMAMG00000021436)	RNF14 (ENSMAMG00000021429)	ENSMAMG00000021425	NDFIP1 (ENSMAMG00000027588) ##22	SPRY4 (ENSMAMG00000024910) ##23	ENSMAMG00000008160	ENSMAMG00000021411	ARHGAP26 (ENSMAMG00000021404)	NR3C1 (ENSMAMG00000021400)	yipf5 (ENSMAMG00000024924)	kctd16b (ENSMAMG00000021397)	GRXCR2 (ENSMAMG00000027184)	PLAC8L1 (ENSMAMG00000021392)	LARS1 (ENSMAMG00000021385)	RBM27 (ENSMAMG00000021382) ##21	pou4f3 (ENSMAMG00000021381)	ENSMAMG00000021380	ENSMAMG00000021367	drd1b (ENSMAMG00000021363)
Anabantoidei	ANCESTRAL SPECIES	12	ENSGT00940000158396	ENSGT00390000015484.j	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000176998	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B
Siamese fighting fish	MODERN SPECIES	5	ENSBSLG00000025127	ENSBSLG00000025128	ENSBSLG00000025131	ENSBSLG00000025134	ENSBSLG00000025135	ENSBSLG00000025138	CCNI2 (ENSBSLG00000025141)	septin8a (ENSBSLG00000025151)	ENSBSLG00000025199	ENSBSLG00000025200	AFF4 (ENSBSLG00000025201)	zcchc10 (ENSBSLG00000025203)	hspa4a (ENSBSLG00000025211)	rnf14 (ENSBSLG00000025265)	endou2 (ENSBSLG00000025268)	ndfip1l (ENSBSLG00000025271) ##22	spry4 (ENSBSLG00000025277) ##23	ARHGAP26 (ENSBSLG00000025286)	NR3C1 (ENSBSLG00000025292)	yipf5 (ENSBSLG00000002332)	kctd16b (ENSBSLG00000002377)	GRXCR2 (ENSBSLG00000002396)	PLAC8L1 (ENSBSLG00000002418)	LARS1 (ENSBSLG00000002547)	RBM27 (ENSBSLG00000003006) ##21	pou4f3 (ENSBSLG00000003014)	ENSBSLG00000003016	ENSBSLG00000003017	RAD50 (ENSBSLG00000003028)	drd1b (ENSBSLG00000003186)	ENSBSLG00000003569
Climbing perch	MODERN SPECIES	5	ENSATEG00000028443	ENSATEG00000011293	GABRB2 (ENSATEG00000011255)	GABRA6 (ENSATEG00000011194)	gabra1 (ENSATEG00000011169)	GABRG2 (ENSATEG00000011122)	CCNI2 (ENSATEG00000011108)	septin8a (ENSATEG00000011056)	ENSATEG00000029418	ENSATEG00000010997	AFF4 (ENSATEG00000010963)	zcchc10 (ENSATEG00000010945)	hspa4a (ENSATEG00000010850)	RNF14 (ENSATEG00000010831)	ENSATEG00000010793	NDFIP1 (ENSATEG00000010763) ##22	SPRY4 (ENSATEG00000025572) ##23	ENSATEG00000010742	ARHGAP26 (ENSATEG00000010645)	NR3C1 (ENSATEG00000010600)	yipf5 (ENSATEG00000010591)	kctd16b (ENSATEG00000010581)	GRXCR2 (ENSATEG00000010553)	PLAC8L1 (ENSATEG00000010528)	LARS1 (ENSATEG00000010441)	RBM27 (ENSATEG00000010385) ##21	pou4f3 (ENSATEG00000010368)	ENSATEG00000010350	ENSATEG00000010338	ENSATEG00000010239	drd1b (ENSATEG00000010207)
Carangaria	ANCESTRAL SPECIES	16	ENSGT00390000015484.j	ENSGT00940000164327.a	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000176998	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B
Carangaria_A	ANCESTRAL SPECIES	8	ENSGT00390000015484.j	ENSGT00940000164327.a	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000176998	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B
Seriola	ANCESTRAL SPECIES	2	ENSGT00390000015484.j	ENSGT00940000164327.a	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000176998	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B
Greater amberjack	MODERN SPECIES	139	ENSSDUG00000019711	ins (ENSSDUG00000019701)	GABRB2 (ENSSDUG00000019683)	GABRA6 (ENSSDUG00000019671)	gabra1 (ENSSDUG00000019654)	GABRG2 (ENSSDUG00000019640)	CCNI2 (ENSSDUG00000019631)	septin8a (ENSSDUG00000019607)	SOWAHA (ENSSDUG00000019599)	ENSSDUG00000019549	AFF4 (ENSSDUG00000019498)	zcchc10 (ENSSDUG00000019487)	hspa4a (ENSSDUG00000019408)	rnf14 (ENSSDUG00000019373)	endou2 (ENSSDUG00000019368)	ndfip1l (ENSSDUG00000019333) ##22	spry4 (ENSSDUG00000019324) ##23	ENSSDUG00000019317	ARHGAP26 (ENSSDUG00000019202)
Yellowtail amberjack	MODERN SPECIES	3182	ENSSLDG00000008197	ins (ENSSLDG00000008164)	GABRB2 (ENSSLDG00000008129)	GABRA6 (ENSSLDG00000008075)	gabra1 (ENSSLDG00000008029)	GABRG2 (ENSSLDG00000007939)	CCNI2 (ENSSLDG00000007903)	septin8a (ENSSLDG00000007839)	SOWAHA (ENSSLDG00000007803)	ENSSLDG00000007763	AFF4 (ENSSLDG00000007683)	zcchc10 (ENSSLDG00000007657)	hspa4a (ENSSLDG00000007611)	rnf14 (ENSSLDG00000007562)	endou2 (ENSSLDG00000007540)	ndfip1l (ENSSLDG00000007502) ##22	spry4 (ENSSLDG00000007475) ##23	ENSSLDG00000007455	ARHGAP26 (ENSSLDG00000007338)	NR3C1 (ENSSLDG00000007270)	yipf5 (ENSSLDG00000007233)	kctd16b (ENSSLDG00000007214)	GRXCR2 (ENSSLDG00000007195)	PLAC8L1 (ENSSLDG00000007161)	LARS1 (ENSSLDG00000007054)	RBM27 (ENSSLDG00000006922) ##21	pou4f3 (ENSSLDG00000006890)	ENSSLDG00000006869	RAD50 (ENSSLDG00000006735)	drd1b (ENSSLDG00000006695)	msx2b (ENSSLDG00000006681)
Barramundi perch	MODERN SPECIES	94	ENSLCAG00010018163	ins (ENSLCAG00010018166)	GABRB2 (ENSLCAG00010018176)	GABRA6 (ENSLCAG00010018184)	gabra1 (ENSLCAG00010018189)	GABRG2 (ENSLCAG00010018198)	CCNI2 (ENSLCAG00010018242)	septin8a (ENSLCAG00010018253)	ENSLCAG00010018262	ENSLCAG00010018267	AFF4 (ENSLCAG00010018272)	zcchc10 (ENSLCAG00010018286)	hspa4a (ENSLCAG00010018546)	rnf14 (ENSLCAG00010019733)	endou2 (ENSLCAG00010019736)	ndfip1l (ENSLCAG00010019752) ##22	spry4 (ENSLCAG00010019778) ##23	ENSLCAG00010019779	ARHGAP26 (ENSLCAG00010019798)	NR3C1 (ENSLCAG00010019875)	yipf5 (ENSLCAG00010019885)	kctd16b (ENSLCAG00010019888)	GRXCR2 (ENSLCAG00010019890)	CYP8B1 (ENSLCAG00010019891)	PLAC8L1 (ENSLCAG00010019893)	LARS1 (ENSLCAG00010019935)	RBM27 (ENSLCAG00010020035) ##21	pou4f3 (ENSLCAG00010020041)	ENSLCAG00010020043	ENSLCAG00010020044	ENSLCAG00010020048
Pleuronectoidei	ANCESTRAL SPECIES	23	ENSGT00390000015484.j	ENSGT00940000164327.a	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B	ENSGT00390000000483.a.a
Turbot	MODERN SPECIES	16	ENSSMAG00000005229	ENSSMAG00000034249	GABRB2 (ENSSMAG00000005017)	GABRA6 (ENSSMAG00000004959)	gabra1 (ENSSMAG00000004920)	GABRG2 (ENSSMAG00000004886)	CCNI2 (ENSSMAG00000004864)	septin8a (ENSSMAG00000004842)	SOWAHA (ENSSMAG00000004831)	ENSSMAG00000004815	AFF4 (ENSSMAG00000004734)	zcchc10 (ENSSMAG00000032607)	hspa4a (ENSSMAG00000004662)	RNF14 (ENSSMAG00000004650)	ENSSMAG00000004645	NDFIP1 (ENSSMAG00000036948) ##22	SPRY4 (ENSSMAG00000004612) ##23	ENSSMAG00000004597	ARHGAP26 (ENSSMAG00000004561)	NR3C1 (ENSSMAG00000004511)	yipf5 (ENSSMAG00000004419)	kctd16b (ENSSMAG00000004410)	GRXCR2 (ENSSMAG00000004394)	PLAC8L1 (ENSSMAG00000022953)	LARS1 (ENSSMAG00000004078)	RBM27 (ENSSMAG00000004138) ##21	pou4f3 (ENSSMAG00000004151)	ENSSMAG00000004161	drd1b (ENSSMAG00000004335)	ENSSMAG00000004353	ENSSMAG00000027238
Tongue sole	MODERN SPECIES	10	rfc3 (ENSCSEG00000012450)	ENSCSEG00000012413	ENSCSEG00000012359	SERTM1 (ENSCSEG00000012342)	sparta (ENSCSEG00000012278)	ENSCSEG00000012263	dclk1a (ENSCSEG00000012243)	rfxap (ENSCSEG00000012231)	ENSCSEG00000012196	alg5 (ENSCSEG00000012166)	HSPA4 (ENSCSEG00000012129)	rnf14 (ENSCSEG00000012116)	endou2 (ENSCSEG00000012111)	spry4 (ENSCSEG00000012105) ##23	fgf1b (ENSCSEG00000012102)	ndfip1l (ENSCSEG00000012074) ##22	ARHGAP26 (ENSCSEG00000012004)	ENSCSEG00000011872	AUTS2 (ENSCSEG00000011806)	ints2 (ENSCSEG00000011730)	med13a (ENSCSEG00000011668)	rnft1 (ENSCSEG00000011652)	ENSCSEG00000011623	ptrh2 (ENSCSEG00000011617)	cltca (ENSCSEG00000011486)	nherf4b (ENSCSEG00000011455)	atp5l (ENSCSEG00000011411)	ftr82 (ENSCSEG00000011399)	ftr83 (ENSCSEG00000011391)	ruvbl2 (ENSCSEG00000011364)	SPNS2 (ENSCSEG00000011335)
Eupercaria	ANCESTRAL SPECIES	17	ENSGT00940000158396	ENSGT00390000015484.j	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000176998	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B
Tetraodontidae	ANCESTRAL SPECIES	6	ENSGT00940000158396	ENSGT00940000154245.A.jb.a	ENSGT00940000154245.A.kb	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a.g	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B	ENSGT00390000000483.a.a
Tetraodon	MODERN SPECIES	22	stk10 (ENSTNIG00000014256)	SH3PXD2B (ENSTNIG00000014255)	GABRB2 (ENSTNIG00000019742)	ENSTNIG00000004179	GABRA6 (ENSTNIG00000018194)	gabra1 (ENSTNIG00000018195)	GABRG2 (ENSTNIG00000018196)	CCNI2 (ENSTNIG00000018197)	septin8a (ENSTNIG00000018198)	ENSTNIG00000018199	ENSTNIG00000018200	AFF4 (ENSTNIG00000018201)	ENSTNIG00000018202	rnf14 (ENSTNIG00000018203)	endou2 (ENSTNIG00000018204)	ndfip1l (ENSTNIG00000018205) ##22	spry4 (ENSTNIG00000018206) ##23	ENSTNIG00000018207	ARHGAP26 (ENSTNIG00000018208)	NR3C1 (ENSTNIG00000018209)	yipf5 (ENSTNIG00000018210)	kctd16b (ENSTNIG00000018211)	GRXCR2 (ENSTNIG00000018212)	PLAC8L1 (ENSTNIG00000018213)	LARS1 (ENSTNIG00000018214)	RBM27 (ENSTNIG00000018215) ##21	pou4f3 (ENSTNIG00000018216)	RAD50 (ENSTNIG00000018217)	drd1b (ENSTNIG00000018218)	msx2b (ENSTNIG00000018219)	nsg2 (ENSTNIG00000018220)
Fugu	MODERN SPECIES	6	dpysl3 (ENSTRUG00000000801)	STK32A (ENSTRUG00000001175)	stk10 (ENSTRUG00000001369)	SH3PXD2B (ENSTRUG00000001823)	GABRB2 (ENSTRUG00000002628)	gabra1 (ENSTRUG00000005997)	GABRG2 (ENSTRUG00000006533)	ENSTRUG00000025743	SOWAHA (ENSTRUG00000033404)	ENSTRUG00000020132	AFF4 (ENSTRUG00000008087)	zcchc10 (ENSTRUG00000023781)	hspa4a (ENSTRUG00000008366)	rnf14 (ENSTRUG00000008815)	endou2 (ENSTRUG00000008965)	ndfip1l (ENSTRUG00000008999) ##22	mpzl1l (ENSTRUG00000009115)	rabep1 (ENSTRUG00000009248)	ENSTRUG00000009343	kcnj1b (ENSTRUG00000009385)	foxred1 (ENSTRUG00000009457)	FCHSD2 (ENSTRUG00000009588)	ENSTRUG00000009902	ENSTRUG00000010002	ompb (ENSTRUG00000024676)	CAPN5 (ENSTRUG00000010580)	cul5a (ENSTRUG00000010860)	slc35f2 (ENSTRUG00000011198)	elmod1 (ENSTRUG00000011350)	gria4b (ENSTRUG00000011517)	ywhae2 (ENSTRUG00000030321)
Eupecaria_A	ANCESTRAL SPECIES	17	ENSGT00940000158396	ENSGT00390000015484.j	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000176998	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B
Eupecaria_B	ANCESTRAL SPECIES	17	ENSGT00940000158396	ENSGT00390000015484.j	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000176998	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B
Eupecaria_C	ANCESTRAL SPECIES	15	ENSGT00940000158396	ENSGT00390000015484.j	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000176998	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	12	ENSGT00940000158396	ENSGT00940000182424	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000176998	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B	ENSGT00390000000483.a.a
Large yellow croaker	MODERN SPECIES	493	ENSLCRG00005015663	ENSLCRG00005015660	GABRB2 (ENSLCRG00005015579)	GABRA6 (ENSLCRG00005015558)	gabra1 (ENSLCRG00005015321)	GABRG2 (ENSLCRG00005014438)	CCNI2 (ENSLCRG00005014424)	septin8a (ENSLCRG00005014422)	SOWAHA (ENSLCRG00005014420)	ENSLCRG00005014418	AFF4 (ENSLCRG00005014406)	zcchc10 (ENSLCRG00005014402)	hspa4a (ENSLCRG00005012711)	rnf14 (ENSLCRG00005012699)	endou2 (ENSLCRG00005012696)	ndfip1l (ENSLCRG00005012534) ##22	spry4 (ENSLCRG00005012523) ##23	fgf1b (ENSLCRG00005012521)	ARHGAP26 (ENSLCRG00005012211)	NR3C1 (ENSLCRG00005012202)	yipf5 (ENSLCRG00005012201)	kctd16b (ENSLCRG00005012198)	GRXCR2 (ENSLCRG00005012196)	CYP8B1 (ENSLCRG00005012193)	PLAC8L1 (ENSLCRG00005012192)	RBM27 (ENSLCRG00005011797) ##21	pou4f3 (ENSLCRG00005011794)	ENSLCRG00005011791	ENSLCRG00005011790	RAD50 (ENSLCRG00005011645)	drd1b (ENSLCRG00005011635)
European seabass	MODERN SPECIES	4	ENSDLAG00005034428	ENSDLAG00005030010	GABRB2 (ENSDLAG00005011797)	GABRA6 (ENSDLAG00005011772)	gabra1 (ENSDLAG00005011616)	GABRG2 (ENSDLAG00005011309)	ENSDLAG00005033087	SOWAHA (ENSDLAG00005009271)	septin8a (ENSDLAG00005009337)	ENSDLAG00005009264	AFF4 (ENSDLAG00005009218)	zcchc10 (ENSDLAG00005009210)	hspa4a (ENSDLAG00005008744)	RNF14 (ENSDLAG00005008718)	ENSDLAG00005008713	NDFIP1 (ENSDLAG00005030480) ##22	SPRY4 (ENSDLAG00005030460) ##23	ENSDLAG00005008529	ARHGAP26 (ENSDLAG00005007832)	NR3C1 (ENSDLAG00005007724)	yipf5 (ENSDLAG00005007714)	kctd16b (ENSDLAG00005028013)	GRXCR2 (ENSDLAG00005007703)	ENSDLAG00005007582	LARS1 (ENSDLAG00005007002)	ENSDLAG00005006948 ##21	pou4f3 (ENSDLAG00005006938)	ENSDLAG00005006927	ENSDLAG00005006064	drd1b (ENSDLAG00005033496)	ENSDLAG00005006020
Gilthead seabream	MODERN SPECIES	4	dpysl3 (ENSSAUG00010021129)	zw10 (ENSSAUG00010023704)	ENSSAUG00010024221	ENSSAUG00010024223	tbl2 (ENSSAUG00010024225)	ENSSAUG00010024227	CCNI2 (ENSSAUG00010024230)	septin8a (ENSSAUG00010024237)	SOWAHA (ENSSAUG00010024356)	ENSSAUG00010024357	AFF4 (ENSSAUG00010024359)	zcchc10 (ENSSAUG00010024362)	hspa4a (ENSSAUG00010001704)	rnf14 (ENSSAUG00010002187)	endou2 (ENSSAUG00010002197)	ndfip1l (ENSSAUG00010002216) ##22	spry4 (ENSSAUG00010002384) ##23	ENSSAUG00010002386	ARHGAP26 (ENSSAUG00010002443)	NR3C1 (ENSSAUG00010005098)	yipf5 (ENSSAUG00010005340)	kctd16b (ENSSAUG00010005344)	GRXCR2 (ENSSAUG00010005347)	PLAC8L1 (ENSSAUG00010005348)	LARS1 (ENSSAUG00010005423)	RBM27 (ENSSAUG00010008475) ##21	pou4f3 (ENSSAUG00010008476)	ENSSAUG00010008477	ENSSAUG00010008480	RAD50 (ENSSAUG00010008487)	drd1b (ENSSAUG00010009352)
Perciformes	ANCESTRAL SPECIES	22	ENSGT00940000158396	ENSGT00390000015484.j	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000176998	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B
Cottioidei	ANCESTRAL SPECIES	10	ENSGT00940000156818	ENSGT00940000158396	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000176998	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B
Lumpfish	MODERN SPECIES	5	stk10 (ENSCLMG00005016706)	SH3PXD2B (ENSCLMG00005017271)	GABRB2 (ENSCLMG00005017276)	GABRA6 (ENSCLMG00005017312)	gabra1 (ENSCLMG00005017336)	GABRG2 (ENSCLMG00005017457)	CCNI2 (ENSCLMG00005017579)	septin8a (ENSCLMG00005001528)	ENSCLMG00005001836	ENSCLMG00005001837	AFF4 (ENSCLMG00005001838)	zcchc10 (ENSCLMG00005001857)	hspa4a (ENSCLMG00005001879)	rnf14 (ENSCLMG00005003698)	endou2 (ENSCLMG00005003700)	ndfip1l (ENSCLMG00005003702) ##22	ENSCLMG00005003768	ARHGAP26 (ENSCLMG00005003832)	NR3C1 (ENSCLMG00005011759)	yipf5 (ENSCLMG00005011761)	kctd16b (ENSCLMG00005011762)	PLAC8L1 (ENSCLMG00005011763)	LARS1 (ENSCLMG00005011773)	RBM27 (ENSCLMG00005011820) ##21	pou4f3 (ENSCLMG00005011821)	ENSCLMG00005011822	RAD50 (ENSCLMG00005011823)	drd1b (ENSCLMG00005012251)	ENSCLMG00005012252	ENSCLMG00005012253	nsg2 (ENSCLMG00005012254)
Stickleback	MODERN SPECIES	7	SH3PXD2B (ENSGACG00000020744)	GABRB2 (ENSGACG00000020743)	GABRA6 (ENSGACG00000020742)	ENSGACG00000020741	gabra1 (ENSGACG00000020740)	GABRG2 (ENSGACG00000020739)	CCNI2 (ENSGACG00000020738)	septin8a (ENSGACG00000020737)	ENSGACG00000020736	ENSGACG00000020735	AFF4 (ENSGACG00000020734)	zcchc10 (ENSGACG00000020733)	hspa4a (ENSGACG00000020732)	rnf14 (ENSGACG00000020731)	endou2 (ENSGACG00000020730)	ndfip1l (ENSGACG00000020729) ##22	spry4 (ENSGACG00000020728) ##23	fgf1b (ENSGACG00000020727)	ARHGAP26 (ENSGACG00000020726)	NR3C1 (ENSGACG00000020725)	yipf5 (ENSGACG00000020724)	kctd16b (ENSGACG00000020723)	GRXCR2 (ENSGACG00000020722)	PLAC8L1 (ENSGACG00000020721)	LARS1 (ENSGACG00000020720)	RBM27 (ENSGACG00000020719) ##21	pou4f3 (ENSGACG00000020718)	RAD50 (ENSGACG00000020717)	drd1b (ENSGACG00000020716)	ENSGACG00000020715	nsg2 (ENSGACG00000020714)
Perciformes_a	ANCESTRAL SPECIES	20	ENSGT00940000158396	ENSGT00390000015484.j	ENSGT00940000154245.A.jb.a	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.g.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.r	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000176998	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B
Pike perch	MODERN SPECIES	54							CCNI2 (ENSSLUG00000023657)	septin8a (ENSSLUG00000023677)	SOWAHA (ENSSLUG00000023805)	ENSSLUG00000023807	AFF4 (ENSSLUG00000023828)	zcchc10 (ENSSLUG00000023883)	hspa4a (ENSSLUG00000023959)	rnf14 (ENSSLUG00000024503)	endou2 (ENSSLUG00000024506)	ndfip1l (ENSSLUG00000024510) ##22	spry4 (ENSSLUG00000024520) ##23	fgf1b (ENSSLUG00000024524)	ARHGAP26 (ENSSLUG00000024583)	ENSSLUG00000024690	NR3C1 (ENSSLUG00000024693)	yipf5 (ENSSLUG00000024699)	kctd16b (ENSSLUG00000024700)	GRXCR2 (ENSSLUG00000024704)	ENSSLUG00000024705	ENSSLUG00000024709	PLAC8L1 (ENSSLUG00000024713)	LARS1 (ENSSLUG00000024724)	RBM27 (ENSSLUG00000024751) ##21	pou4f3 (ENSSLUG00000024758)	ENSSLUG00000024760
Channel bull blenny	MODERN SPECIES	5	ENSCGOG00000019987	GABRB2 (ENSCGOG00000019927)	GABRA6 (ENSCGOG00000019911)	gabra1 (ENSCGOG00000019898)	GABRG2 (ENSCGOG00000019544)	CCNI2 (ENSCGOG00000019522)	septin8a (ENSCGOG00000016990)	SOWAHA (ENSCGOG00000016881)	ENSCGOG00000016880	ENSCGOG00000016875	AFF4 (ENSCGOG00000016867)	zcchc10 (ENSCGOG00000016863)	hspa4a (ENSCGOG00000012374)	rnf14 (ENSCGOG00000012262)	endou2 (ENSCGOG00000012256)	ndfip1l (ENSCGOG00000012116) ##22	spry4 (ENSCGOG00000012108) ##23	ENSCGOG00000012107	ARHGAP26 (ENSCGOG00000009452)	NR3C1 (ENSCGOG00000009121)	yipf5 (ENSCGOG00000009107)	kctd16b (ENSCGOG00000009102)	GRXCR2 (ENSCGOG00000009100)	PLAC8L1 (ENSCGOG00000009099)	LARS1 (ENSCGOG00000008893)	RBM27 (ENSCGOG00000008851) ##21	pou4f3 (ENSCGOG00000008847)	ENSCGOG00000008842	RAD50 (ENSCGOG00000007389)	drd1b (ENSCGOG00000007335)	msx2b (ENSCGOG00000007332)
Ballan wrasse	MODERN SPECIES	112	SH3PXD2B (ENSLBEG00000017207)	ENSLBEG00000017394	GABRB2 (ENSLBEG00000017428)	GABRA6 (ENSLBEG00000017476)	gabra1 (ENSLBEG00000017525)	GABRG2 (ENSLBEG00000017579)	CCNI2 (ENSLBEG00000017648)	septin8a (ENSLBEG00000017693)	SOWAHA (ENSLBEG00000017721)	ENSLBEG00000017731	AFF4 (ENSLBEG00000017778)	ENSLBEG00000017901	hspa4a (ENSLBEG00000017953)	RNF14 (ENSLBEG00000018040)	endou2 (ENSLBEG00000018069)	ndfip1l (ENSLBEG00000018139) ##22
Euteleosteomorpha	ANCESTRAL SPECIES	25	ENSGT00550000074618.a.a.lb.a	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000159568	ENSGT00940000159491	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156068.j	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00390000014316.c.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000160067	ENSGT00940000156386
Acanthomorphata	ANCESTRAL SPECIES	1	ENSGT00940000159568	ENSGT00940000159491	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000154245.A.kb	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000172088	ENSGT00940000154726	ENSGT00940000156068.j	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00390000014316.c.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000160067	ENSGT00940000156386	ENSGT00940000155902.c	ENSGT00940000160087	ENSGT00940000158214	ENSGT01020000230412.D.b	ENSGT00940000159746	ENSGT00940000156281	ENSGT00940000155753	ENSGT00940000153941.a.b	ENSGT00390000015700.b ##10	ENSGT00390000015364.a.b.b
Euacanthomorphacea	ANCESTRAL SPECIES	10	ENSGT00550000074618.a.a.lb.a	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000159568	ENSGT00940000159491	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156068.j	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00390000014316.c.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000160067	ENSGT00940000156386	ENSGT00940000155902.c	ENSGT00940000160087	ENSGT00940000158214	ENSGT01020000230412.D.b	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000153941.a.b	ENSGT00390000015700.b ##10	ENSGT00390000015364.a.b.b
Percomorphaceae	ANCESTRAL SPECIES	11	ENSGT00550000074618.a.a.lb.a	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000159568	ENSGT00940000159491	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156068.j	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00390000014316.c.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000160067	ENSGT00940000156386	ENSGT00940000155902.c	ENSGT00940000160087	ENSGT00940000158214	ENSGT01020000230412.D.b	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000153941.a.b	ENSGT00390000015700.b ##10	ENSGT00390000015364.a.b.b
Tiger tail seahorse	MODERN SPECIES	175	PPP2CA (ENSHCOG00000005234)	sfxn1 (ENSHCOG00000005258)	atp7a (ENSHCOG00000000841)	ENSHCOG00000000164	ENSHCOG00000005367	gabrb2a (ENSHCOG00000005378)	nudcd2 (ENSHCOG00000005388)	gabra6a (ENSHCOG00000005395)	ccng1 (ENSHCOG00000005415)	septin8b (ENSHCOG00000005437)	ENSHCOG00000005441	gdf9 (ENSHCOG00000005449)	uqcrq (ENSHCOG00000005457)	hspa4b (ENSHCOG00000005495)	gnpda1 (ENSHCOG00000005515)	NDFIP1 (ENSHCOG00000005534) ##22	fgf1a (ENSHCOG00000005595)	nr3c1 (ENSHCOG00000005606)	kctd16a (ENSHCOG00000005617)	ENSHCOG00000005628	ENSHCOG00000005635	kif3a (ENSHCOG00000005671)	atrx (ENSHCOG00000005865)	fgf16 (ENSHCOG00000005892)	zdhhc15b (ENSHCOG00000005904)	uprt (ENSHCOG00000005919)	abcb7 (ENSHCOG00000005956)	NEXMIF (ENSHCOG00000005974)	RLIM (ENSHCOG00000000190)	glod5 (ENSHCOG00000006003)	ENSHCOG00000006011
Percomorphaceae_B	ANCESTRAL SPECIES	14	ENSGT00550000074618.a.a.lb.a	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000159568	ENSGT00940000159491.ib	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156068.j	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00390000014316.c.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000160067	ENSGT00940000156386	ENSGT00940000155902.c	ENSGT00940000160087	ENSGT00940000158214	ENSGT01020000230412.D.b	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000153941.a.b	ENSGT00390000015700.b ##10	ENSGT00390000015364.a.b.b
Percomorphaceae_C	ANCESTRAL SPECIES	16	ENSGT00550000074618.a.a.lb.a	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000159568	ENSGT00940000159491.ib	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156068.j	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00390000014316.c.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000160067	ENSGT00940000156386	ENSGT00940000155763.b	ENSGT01000000221770	ENSGT00940000155902.c	ENSGT00940000160087	ENSGT00940000158214	ENSGT01020000230412.D.b	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000153941.a.b
Eupercaria	ANCESTRAL SPECIES	12	ENSGT00550000074618.a.a.lb.a	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000159568	ENSGT00940000159491.ib	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156068.j	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00390000014316.c.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000160067	ENSGT00940000156386	ENSGT01000000221770	ENSGT00940000155902.c	ENSGT00940000160087	ENSGT00940000158214	ENSGT01020000230412.D.b	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000153941.a.b	ENSGT00390000015700.b ##10
Tetraodontidae	ANCESTRAL SPECIES	9	ENSGT00390000015060	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000159568	ENSGT00940000159491.ib	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156068.j	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00390000014316.c.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000160067	ENSGT00940000156386	ENSGT00940000155902.c	ENSGT00940000160087	ENSGT00940000158214	ENSGT01020000230412.D.b	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000153941.a.b	ENSGT00390000015364.a.b.a	ENSGT00390000003706.a.b.a
Fugu	MODERN SPECIES	5	slu7 (ENSTRUG00000001335)	ENSTRUG00000001818	si:ch1073-44g3.1 (ENSTRUG00000026079)	atp5po (ENSTRUG00000002128)	sfxn1 (ENSTRUG00000002626)	atp7a (ENSTRUG00000003659)	ENSTRUG00000004586	ATP10B (ENSTRUG00000004741)	gabrb2a (ENSTRUG00000005507)	gabra6a (ENSTRUG00000005703)	nudcd2 (ENSTRUG00000032433)	ccng1 (ENSTRUG00000027749)	septin8b (ENSTRUG00000006162)	ENSTRUG00000021050	hspa4b (ENSTRUG00000006546)	NDFIP1 (ENSTRUG00000007238) ##22	fgf1a (ENSTRUG00000007357)	nr3c1 (ENSTRUG00000007443)	kctd16a (ENSTRUG00000007820)	ENSTRUG00000024067	kif3a (ENSTRUG00000007874)	atrx (ENSTRUG00000022330)	fgf16 (ENSTRUG00000022728)	zdhhc15b (ENSTRUG00000008545)	uprt (ENSTRUG00000021064)	abcb7 (ENSTRUG00000008824)	NEXMIF (ENSTRUG00000009017)	RLIM (ENSTRUG00000020047)	glod5 (ENSTRUG00000009099)	ENSTRUG00000029524	glod5 (ENSTRUG00000023963)
Tetraodon	MODERN SPECIES		atp5po (ENSTNIG00000008930)	sfxn1 (ENSTNIG00000008931)	atp7a (ENSTNIG00000008932)	ENSTNIG00000008933	ENSTNIG00000008934	gabrb2a (ENSTNIG00000008935)	gabra6a (ENSTNIG00000008936)	nudcd2 (ENSTNIG00000008937)	ccng1 (ENSTNIG00000008938)	septin8b (ENSTNIG00000008939)	ENSTNIG00000008940	gdf9 (ENSTNIG00000008941)	uqcrq (ENSTNIG00000002046)	hspa4b (ENSTNIG00000008942)	gnpda1 (ENSTNIG00000008943)	NDFIP1 (ENSTNIG00000008944) ##22	fgf1a (ENSTNIG00000008945)	nr3c1 (ENSTNIG00000008946)	kctd16a (ENSTNIG00000008947)	ENSTNIG00000008948	kif3a (ENSTNIG00000008949)	kif3a (ENSTNIG00000008950)	atrx (ENSTNIG00000008951)	fgf16 (ENSTNIG00000008952)	zdhhc15b (ENSTNIG00000008953)	uprt (ENSTNIG00000008954)	abcb7 (ENSTNIG00000008955)	NEXMIF (ENSTNIG00000000495)	RLIM (ENSTNIG00000008956)	glod5 (ENSTNIG00000008957)	si:ch211-153b23.4 (ENSTNIG00000008958)
Eupecaria_A	ANCESTRAL SPECIES	13	ENSGT00550000074618.a.a.lb.a	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000159568	ENSGT00940000159491.ib	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156068.j	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00390000014316.c.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000160067	ENSGT00940000156386	ENSGT01000000221770	ENSGT00940000155902.c	ENSGT00940000160087	ENSGT00940000158214	ENSGT01020000230412.D.b	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000153941.a.b	ENSGT00390000015700.b ##10
Eupecaria_B	ANCESTRAL SPECIES	13	ENSGT00550000074618.a.a.lb.a	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000159568	ENSGT00940000159491.ib	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156068.j	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00390000014316.c.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000160067	ENSGT00940000156386	ENSGT01000000221770	ENSGT00940000155902.c	ENSGT00940000160087	ENSGT00940000158214	ENSGT01020000230412.D.b	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000153941.a.b	ENSGT00390000015700.b ##10
Eupecaria_C	ANCESTRAL SPECIES	12	ENSGT00550000074618.a.a.lb.a	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000159568	ENSGT00940000159491.ib	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156068.j	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00390000014316.c.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000160067	ENSGT00940000156386	ENSGT01000000221770	ENSGT00940000155902.c	ENSGT00940000160087	ENSGT00940000158214	ENSGT01020000230412.D.b	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000153941.a.b	ENSGT00390000015700.b ##10
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	14	ENSGT00550000074618.a.a.lb.a	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000159568	ENSGT00940000159491.ib	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156068.j	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00390000014316.c.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000160067	ENSGT00940000156386	ENSGT01000000221770	ENSGT00940000155902.c	ENSGT00940000160087	ENSGT00940000158214	ENSGT01020000230412.D.b	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000153941.a.b	ENSGT00390000015700.b ##10
European seabass	MODERN SPECIES	12	ENSDLAG00005016744	si:ch1073-44g3.1 (ENSDLAG00005017178)	ppp2caa (ENSDLAG00005026994)	sfxn1 (ENSDLAG00005017244)	atp7a (ENSDLAG00005017297)	ENSDLAG00005026618	ENSDLAG00005017903	gabrb2a (ENSDLAG00005018021)	gabra6a (ENSDLAG00005018177)	nudcd2 (ENSDLAG00005001225)	ENSDLAG00005001304	ENSDLAG00005001454	hspa4b (ENSDLAG00005001647)	gnpda1 (ENSDLAG00005005010)	fgf1a (ENSDLAG00005034772)	ENSDLAG00005005071 ##22	nr3c1 (ENSDLAG00005005166)	kctd16a (ENSDLAG00005005323)	ENSDLAG00005005327	kif3a (ENSDLAG00005005336)	ENSDLAG00005005498	atrx (ENSDLAG00005005529)	fgf16 (ENSDLAG00005007185)	zdhhc15b (ENSDLAG00005007210)	UPRT (ENSDLAG00005029932)	abcb7 (ENSDLAG00005007497)	ENSDLAG00005030037	RLIM (ENSDLAG00005026581)	irg1l (ENSDLAG00005009077) ##10	ENSDLAG00005009090	si:ch211-153b23.4 (ENSDLAG00005009098)
Large yellow croaker	MODERN SPECIES		ppp2caa (ENSLCRG00005016819)	sfxn1 (ENSLCRG00005016825)	atp7a (ENSLCRG00005016843)	ENSLCRG00005016875	ATP10B (ENSLCRG00005016882)	gabrb2a (ENSLCRG00005016896)	gabra6a (ENSLCRG00005016921)	nudcd2 (ENSLCRG00005016924)	ccng1 (ENSLCRG00005016925)	septin8b (ENSLCRG00005016934)	ENSLCRG00005018034	gdf9 (ENSLCRG00005018036)	uqcrq (ENSLCRG00005018037)	hspa4b (ENSLCRG00005000419)	gnpda1 (ENSLCRG00005006664)	NDFIP1 (ENSLCRG00005006665) ##22	fgf1a (ENSLCRG00005006666)	nr3c1 (ENSLCRG00005006669)	kctd16a (ENSLCRG00005006794)	ENSLCRG00005006795	kif3a (ENSLCRG00005006801)	ENSLCRG00005006975	atrx (ENSLCRG00005007019)	fgf16 (ENSLCRG00005010099)	uprt (ENSLCRG00005010100)	zdhhc15b (ENSLCRG00005010107)	abcb7 (ENSLCRG00005010171)	NEXMIF (ENSLCRG00005011613)	RLIM (ENSLCRG00005011614)	glod5 (ENSLCRG00005011615)	irg1l (ENSLCRG00005011616) ##10
Gilthead seabream	MODERN SPECIES	9	ppp2caa (ENSSAUG00010004694)	sfxn1 (ENSSAUG00010004688)	atp7a (ENSSAUG00010004556)	ENSSAUG00010004536	ATP10B (ENSSAUG00010002957)	gabrb2a (ENSSAUG00010002699)	gabra6a (ENSSAUG00010002674)	nudcd2 (ENSSAUG00010002658)	ccng1 (ENSSAUG00010002646)	septin8b (ENSSAUG00010002596)	ENSSAUG00010002572	gdf9 (ENSSAUG00010018591)	UQCRQ (ENSSAUG00010018590)	hspa4b (ENSSAUG00010018272)	gnpda1 (ENSSAUG00010018262)	NDFIP1 (ENSSAUG00010018254) ##22	fgf1a (ENSSAUG00010018247)	nr3c1 (ENSSAUG00010018162)	kctd16a (ENSSAUG00010018158)	ENSSAUG00010018155	kif3a (ENSSAUG00010017659)	ENSSAUG00010017650	atrx (ENSSAUG00010016937)	fgf16 (ENSSAUG00010016926)	zdhhc15b (ENSSAUG00010016921)	uprt (ENSSAUG00010016912)	abcb7 (ENSSAUG00010015066)	NEXMIF (ENSSAUG00010015037)	RLIM (ENSSAUG00010015036)	glod5 (ENSSAUG00010015035)	irg1l (ENSSAUG00010015033) ##10
Perciformes	ANCESTRAL SPECIES	13	ENSGT00550000074618.a.a.lb.a	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000159568	ENSGT00940000159491.ib	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156068.j	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00390000014316.c.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000160067	ENSGT00940000156386	ENSGT00940000155902.c	ENSGT00940000160087	ENSGT00940000158214	ENSGT01020000230412.D.b	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000153941.a.b	ENSGT00390000015700.b ##10	ENSGT00390000015364.a.b.b
Perciformes_a	ANCESTRAL SPECIES	11	ENSGT00550000074618.a.a.lb.a	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000159568	ENSGT00940000159491.ib	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156068.j	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00390000014316.c.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000160067	ENSGT00940000156386	ENSGT00940000155902.c	ENSGT00940000160087	ENSGT00940000158214	ENSGT01020000230412.D.b	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000153941.a.b	ENSGT00390000015700.b ##10	ENSGT00390000015364.a.b.a
Pike perch	MODERN SPECIES	36	ppp2caa (ENSSLUG00000006827)	sfxn1 (ENSSLUG00000006818)	atp7a (ENSSLUG00000004780)	ENSSLUG00000004658	ATP10B (ENSSLUG00000004497)	gabrb2a (ENSSLUG00000004401)	gabra6a (ENSSLUG00000004367)	nudcd2 (ENSSLUG00000004353)	ccng1 (ENSSLUG00000004344)	ENSSLUG00000004342	septin8b (ENSSLUG00000002707)	gdf9 (ENSSLUG00000002659)	uqcrq (ENSSLUG00000002657)	hspa4b (ENSSLUG00000001918)	gnpda1 (ENSSLUG00000001587)	NDFIP1 (ENSSLUG00000001572) ##22	fgf1a (ENSSLUG00000001529)	nr3c1 (ENSSLUG00000022260)	kctd16a (ENSSLUG00000022251)	ENSSLUG00000022250	ENSSLUG00000022249	kif3a (ENSSLUG00000022215)	atrx (ENSSLUG00000020556)	fgf16 (ENSSLUG00000020430)	zdhhc15b (ENSSLUG00000020424)	uprt (ENSSLUG00000020403)	abcb7 (ENSSLUG00000019408)	RLIM (ENSSLUG00000019366)	glod5 (ENSSLUG00000019362)	irg1l (ENSSLUG00000019357) ##10	si:ch211-153b23.4 (ENSSLUG00000019345)
Channel bull blenny	MODERN SPECIES	1	ppp2caa (ENSCGOG00000003689)	sfxn1 (ENSCGOG00000003776)	atp7a (ENSCGOG00000003847)	ENSCGOG00000005221	ENSCGOG00000005226	gabrb2a (ENSCGOG00000005240)	gabra6a (ENSCGOG00000005387)	ccng1 (ENSCGOG00000005424)	nudcd2 (ENSCGOG00000005391)	septin8b (ENSCGOG00000005538)	ENSCGOG00000007935	gdf9 (ENSCGOG00000007936)	uqcrq (ENSCGOG00000007938)	hspa4b (ENSCGOG00000007963)	gnpda1 (ENSCGOG00000009491)	NDFIP1 (ENSCGOG00000009548) ##22	fgf1a (ENSCGOG00000009551)	nr3c1 (ENSCGOG00000009555)	kctd16a (ENSCGOG00000009660)	ENSCGOG00000009662	kif3a (ENSCGOG00000009757)	atrx (ENSCGOG00000011030)	fgf16 (ENSCGOG00000012224)	zdhhc15b (ENSCGOG00000012232)	uprt (ENSCGOG00000012269)	abcb7 (ENSCGOG00000012317)	NEXMIF (ENSCGOG00000012988)	RLIM (ENSCGOG00000012990)	glod5 (ENSCGOG00000012993)	irg1l (ENSCGOG00000013000) ##10	ENSCGOG00000013005
Cottioidei	ANCESTRAL SPECIES	9	ENSGT00550000074618.a.a.lb.a	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000159568	ENSGT00940000159491.ib	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156068.j	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00390000014316.c.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000160067	ENSGT00940000156386	ENSGT00940000155902.c	ENSGT00940000160087	ENSGT00940000158214	ENSGT01020000230412.D.b	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000153941.a.b	ENSGT00390000015700.b ##10	ENSGT00390000015364.a.b.b
Lumpfish	MODERN SPECIES	1	atp5po (ENSCLMG00005007557)	ppp2caa (ENSCLMG00005007554)	sfxn1 (ENSCLMG00005007551)	atp7a (ENSCLMG00005001792)	ENSCLMG00005021176	ATP10B (ENSCLMG00005021174)	gabrb2a (ENSCLMG00005021142)	gabra6a (ENSCLMG00005021137)	nudcd2 (ENSCLMG00005021135)	ccng1 (ENSCLMG00005021134)	septin8b (ENSCLMG00005021131)	ENSCLMG00005021127	gdf9 (ENSCLMG00005021126)	hspa4b (ENSCLMG00005020790)	gnpda1 (ENSCLMG00005020783)	NDFIP1 (ENSCLMG00005020782) ##22	fgf1a (ENSCLMG00005020763)	nr3c1 (ENSCLMG00005020761)	kctd16a (ENSCLMG00005020759)	SH3RF2 (ENSCLMG00005020757)	kif3a (ENSCLMG00005020731)	atrx (ENSCLMG00005020135)	fgf16 (ENSCLMG00005020121)	zdhhc15b (ENSCLMG00005020076)	uprt (ENSCLMG00005020068)	abcb7 (ENSCLMG00005018953)	NEXMIF (ENSCLMG00005018937)	RLIM (ENSCLMG00005018935)	glod5 (ENSCLMG00005018934)	irg1l (ENSCLMG00005018933) ##10	ENSCLMG00005018932
Ballan wrasse	MODERN SPECIES	292							gabra6a (ENSLBEG00000026941)	nudcd2 (ENSLBEG00000026933)	ccng1 (ENSLBEG00000026921)	septin8b (ENSLBEG00000026898)	ENSLBEG00000026884	gdf9 (ENSLBEG00000026878)	uqcrq (ENSLBEG00000026868)	hspa4b (ENSLBEG00000026794)	gnpda1 (ENSLBEG00000026769)	NDFIP1 (ENSLBEG00000026749) ##22	fgf1a (ENSLBEG00000026702)	nr3c1 (ENSLBEG00000026667)	kctd16a (ENSLBEG00000026659)	ENSLBEG00000026653	kif3a (ENSLBEG00000026602)	atrx (ENSLBEG00000026519)	fgf16 (ENSLBEG00000026470)	zdhhc15b (ENSLBEG00000026448)	uprt (ENSLBEG00000026431)	abcb7 (ENSLBEG00000026411)	NEXMIF (ENSLBEG00000026398)	RLIM (ENSLBEG00000026378)	glod5 (ENSLBEG00000026362)	irg1l (ENSLBEG00000026345) ##10	ENSLBEG00000026324
Percomorphaceae_D	ANCESTRAL SPECIES	17	ENSGT00550000074618.a.a.lb.a	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000159568	ENSGT00940000159491.ib	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156068.j	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00390000014316.c.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000160067	ENSGT00940000156386	ENSGT00940000155763.b	ENSGT01000000221770	ENSGT00940000155902.c	ENSGT00940000160087	ENSGT00940000158214	ENSGT01020000230412.D.b	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000153941.a.b
Anabantaria	ANCESTRAL SPECIES	15	ENSGT00390000015060	ENSGT00550000074618.a.a.lb.a	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000159568	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156068.j	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00390000014316.c.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000160067	ENSGT00940000156386	ENSGT00940000155902.c	ENSGT00940000160087	ENSGT00940000158214	ENSGT01020000230412.D.b	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000153941.a.b	ENSGT00390000015700.b ##10	ENSGT00390000015364.a.b.b
Zig-zag eel	MODERN SPECIES	1	ppp2caa (ENSMAMG00000008448)	sfxn1 (ENSMAMG00000008458)	atp7a (ENSMAMG00000008478)	ENSMAMG00000008496	ENSMAMG00000025757	gabrb2a (ENSMAMG00000008597)	gabra6a (ENSMAMG00000008625)	nudcd2 (ENSMAMG00000025206)	ccng1 (ENSMAMG00000008739)	ENSMAMG00000008748	ENSMAMG00000008775	ENSMAMG00000008784	ENSMAMG00000008800	hspa4b (ENSMAMG00000008809)	gnpda1 (ENSMAMG00000008865)	ENSMAMG00000025853 ##22	fgf1a (ENSMAMG00000025470)	nr3c1 (ENSMAMG00000008984)	kctd16a (ENSMAMG00000009008)	ENSMAMG00000009029	kif3a (ENSMAMG00000009053)	atrx (ENSMAMG00000009118)	fgf16 (ENSMAMG00000024649)	zdhhc15b (ENSMAMG00000009160)	UPRT (ENSMAMG00000009183)	abcb7 (ENSMAMG00000009198)	NEXMIF (ENSMAMG00000009248)	RLIM (ENSMAMG00000009251)	glod5 (ENSMAMG00000028555)	irg1l (ENSMAMG00000009264) ##10	si:ch211-153b23.4 (ENSMAMG00000028589)
Anabantoidei	ANCESTRAL SPECIES	11	ENSGT00390000015060	ENSGT00550000074618.a.a.lb.a	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000159568	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156068.j	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00390000014316.c.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000160067	ENSGT00940000156386	ENSGT00940000155902.c	ENSGT00940000160087	ENSGT00940000158214	ENSGT01020000230412.D.b	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000153941.a.b	ENSGT00390000015700.b ##10	ENSGT00390000015364.a.b.b
Climbing perch	MODERN SPECIES	1	ENSATEG00000006327	ppp2caa (ENSATEG00000006296)	sfxn1 (ENSATEG00000006251)	atp7a (ENSATEG00000006145)	ENSATEG00000006064	gabrb2a (ENSATEG00000005873)	gabra6a (ENSATEG00000005602)	nudcd2 (ENSATEG00000029930)	ccng1 (ENSATEG00000029682)	ENSATEG00000005522	SOWAHA (ENSATEG00000005516)	ENSATEG00000005477	ENSATEG00000027917	hspa4b (ENSATEG00000005390)	gnpda1 (ENSATEG00000005381)	ENSATEG00000005358 ##22	fgf1a (ENSATEG00000005352)	nr3c1 (ENSATEG00000005344)	kctd16a (ENSATEG00000005310)	ENSATEG00000028880	kif3a (ENSATEG00000005239)	atrx (ENSATEG00000005224)	fgf16 (ENSATEG00000005208)	zdhhc15b (ENSATEG00000005184)	UPRT (ENSATEG00000005165)	abcb7 (ENSATEG00000005099)	NEXMIF (ENSATEG00000005080)	RLIM (ENSATEG00000005057)	glod5 (ENSATEG00000027212)	irg1l (ENSATEG00000005032) ##10	si:ch211-153b23.5 (ENSATEG00000005023)
Siamese fighting fish	MODERN SPECIES	1	ENSBSLG00000010019	si:ch1073-44g3.1 (ENSBSLG00000009999)	atp5po (ENSBSLG00000009959)	ppp2caa (ENSBSLG00000009925)	sfxn1 (ENSBSLG00000009813)	atp7a (ENSBSLG00000009197)	ATP10B (ENSBSLG00000008563)	gabrb2a (ENSBSLG00000008315)	nudcd2 (ENSBSLG00000008259)	ccng1 (ENSBSLG00000020787)	septin8b (ENSBSLG00000020671)	ENSBSLG00000020642	gdf9 (ENSBSLG00000020635)	hspa4b (ENSBSLG00000020496)	gnpda1 (ENSBSLG00000020486)	NDFIP1 (ENSBSLG00000020477) ##22	fgf1a (ENSBSLG00000020451)	nr3c1 (ENSBSLG00000020446)	kctd16a (ENSBSLG00000020444)	ENSBSLG00000020440	kif3a (ENSBSLG00000020094)	ENSBSLG00000019285	fgf16 (ENSBSLG00000019266)	zdhhc15b (ENSBSLG00000018734)	uprt (ENSBSLG00000018716)	abcb7 (ENSBSLG00000017558)	NEXMIF (ENSBSLG00000017475)	RLIM (ENSBSLG00000017450)	glod5 (ENSBSLG00000017418)	ENSBSLG00000017392	irg1l (ENSBSLG00000017329) ##10
Carangaria	ANCESTRAL SPECIES	15	ENSGT00550000074618.a.a.lb.a	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000159568	ENSGT00940000159491.ib	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156068.j	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00390000014316.c.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000160067	ENSGT00940000156386	ENSGT01000000221770	ENSGT00940000155902.c	ENSGT00940000160087	ENSGT00940000158214	ENSGT01020000230412.D.b	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000153941.a.b	ENSGT00390000015700.b ##10
Carangaria_A	ANCESTRAL SPECIES	22	ENSGT00550000074618.a.a.lb.a	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000159568	ENSGT00940000159491.ib	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156068.j	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00390000014316.c.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000160067	ENSGT00940000156386	ENSGT00940000155902.c	ENSGT00940000160087	ENSGT00940000158214	ENSGT01020000230412.D.b	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000153941.a.b	ENSGT00390000015700.b ##10	ENSGT00390000015364.a.b.b
Seriola	ANCESTRAL SPECIES	22	ENSGT00550000074618.a.a.lb.a	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000159568	ENSGT00940000159491.ib	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156068.j	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00390000014316.c.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000160067	ENSGT00940000156386	ENSGT00940000155902.c	ENSGT00940000160087	ENSGT00940000158214	ENSGT01020000230412.D.b	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000153941.a.b	ENSGT00390000015700.b ##10	ENSGT00390000015364.a.b.b.h
Greater amberjack	MODERN SPECIES	67	ppp2caa (ENSSDUG00000005251)	sfxn1 (ENSSDUG00000005288)	atp7a (ENSSDUG00000005325)	ENSSDUG00000005431	ATP10B (ENSSDUG00000005453)	gabrb2a (ENSSDUG00000005532)	gabra6a (ENSSDUG00000005828)	nudcd2 (ENSSDUG00000005978)	ccng1 (ENSSDUG00000005994)	septin8b (ENSSDUG00000006014)	ENSSDUG00000006044	gdf9 (ENSSDUG00000006058)	uqcrq (ENSSDUG00000006065)	hspa4b (ENSSDUG00000006074)	gnpda1 (ENSSDUG00000006115)	NDFIP1 (ENSSDUG00000006132) ##22	fgf1a (ENSSDUG00000006152)	nr3c1 (ENSSDUG00000006165)	kctd16a (ENSSDUG00000006177)	ENSSDUG00000006193	kif3a (ENSSDUG00000006206)	atrx (ENSSDUG00000006261)	fgf16 (ENSSDUG00000006371)	zdhhc15b (ENSSDUG00000006490)	uprt (ENSSDUG00000006519)	abcb7 (ENSSDUG00000006546)	NEXMIF (ENSSDUG00000006587)	RLIM (ENSSDUG00000006593)	glod5 (ENSSDUG00000006599)	irg1l (ENSSDUG00000006609) ##10	ENSSDUG00000006631
Yellowtail amberjack	MODERN SPECIES	2581	ppp2caa (ENSSLDG00000014241)	sfxn1 (ENSSLDG00000014205)	atp7a (ENSSLDG00000014170)	ENSSLDG00000014146	ENSSLDG00000014010	gabrb2a (ENSSLDG00000013927)	gabra6a (ENSSLDG00000013893)	ccng1 (ENSSLDG00000013881)	nudcd2 (ENSSLDG00000013862)	septin8b (ENSSLDG00000013820)	ENSSLDG00000013788	gdf9 (ENSSLDG00000013771)	uqcrq (ENSSLDG00000013761)	hspa4b (ENSSLDG00000013697)	gnpda1 (ENSSLDG00000013669)	NDFIP1 (ENSSLDG00000013654) ##22	fgf1a (ENSSLDG00000013643)	nr3c1 (ENSSLDG00000013625)	kctd16a (ENSSLDG00000013616)	ENSSLDG00000013597	kif3a (ENSSLDG00000013544)
Barramundi perch	MODERN SPECIES	63	ppp2caa (ENSLCAG00010015703)	sfxn1 (ENSLCAG00010015699)	atp7a (ENSLCAG00010015678)	ENSLCAG00010015662	ATP10B (ENSLCAG00010015645)	gabrb2a (ENSLCAG00010015614)	gabra6a (ENSLCAG00010015604)	nudcd2 (ENSLCAG00010015601)	ccng1 (ENSLCAG00010015600)	ENSLCAG00010015598	septin8b (ENSLCAG00010015584)	gdf9 (ENSLCAG00010015580)	uqcrq (ENSLCAG00010015576)	hspa4b (ENSLCAG00010015480)	gnpda1 (ENSLCAG00010015430)	NDFIP1 (ENSLCAG00010015407) ##22	fgf1a (ENSLCAG00010015396)	nr3c1 (ENSLCAG00010015384)	kctd16a (ENSLCAG00010015379)	ENSLCAG00010015355	kif3a (ENSLCAG00010015334)	atrx (ENSLCAG00010015255)	fgf16 (ENSLCAG00010015236)	zdhhc15b (ENSLCAG00010015194)	uprt (ENSLCAG00010015177)	abcb7 (ENSLCAG00010015133)	NEXMIF (ENSLCAG00010015113)	RLIM (ENSLCAG00010015110)	glod5 (ENSLCAG00010015102)	irg1l (ENSLCAG00010015095) ##10	si:ch211-153b23.4 (ENSLCAG00010015092)
Pleuronectoidei	ANCESTRAL SPECIES	18	ENSGT00550000074618.a.a.lb.a	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000159568	ENSGT00940000159491.ib	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156068.j	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00390000014316.c.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000160067	ENSGT00940000156386	ENSGT01000000221770	ENSGT00940000155902.c	ENSGT00940000160087	ENSGT00940000158214	ENSGT01020000230412.D.b	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000153941.a.b	ENSGT00390000015700.b ##10
Turbot	MODERN SPECIES	4	ppp2caa (ENSSMAG00000004354)	sfxn1 (ENSSMAG00000004384)	atp7a (ENSSMAG00000004438)	ENSSMAG00000004489	ENSSMAG00000004529	gabrb2a (ENSSMAG00000004657)	gabra6a (ENSSMAG00000004712)	ccng1 (ENSSMAG00000029181)	nudcd2 (ENSSMAG00000028352)	ENSSMAG00000004751	ENSSMAG00000022620	ENSSMAG00000004832	ENSSMAG00000004844	hspa4b (ENSSMAG00000004855)	gnpda1 (ENSSMAG00000004936)	ENSSMAG00000025173 ##22	fgf1a (ENSSMAG00000004967)	nr3c1 (ENSSMAG00000004972)	kctd16a (ENSSMAG00000004996)	ENSSMAG00000005000	kif3a (ENSSMAG00000005060)	ENSSMAG00000005183	atrx (ENSSMAG00000005192)	fgf16 (ENSSMAG00000005218)	zdhhc15b (ENSSMAG00000005256)	UPRT (ENSSMAG00000005295)	abcb7 (ENSSMAG00000005305)	NEXMIF (ENSSMAG00000005369)	RLIM (ENSSMAG00000021649)	irg1l (ENSSMAG00000005426) ##10	si:ch211-153b23.4 (ENSSMAG00000010067)
Tongue sole	MODERN SPECIES	6	sfxn1 (ENSCSEG00000015401)	atp7a (ENSCSEG00000015363)	ENSCSEG00000015349	ENSCSEG00000015344	gabrb2a (ENSCSEG00000015327)	gabra6a (ENSCSEG00000015301)	ccng1 (ENSCSEG00000015284)	nudcd2 (ENSCSEG00000015289)	ENSCSEG00000015282	ENSCSEG00000015280	gdf9 (ENSCSEG00000015272)	septin8b (ENSCSEG00000015261)	hspa4b (ENSCSEG00000015218)	gnpda1 (ENSCSEG00000015205)	gnpda1 (ENSCSEG00000015197)	NDFIP1 (ENSCSEG00000015181) ##22	fgf1a (ENSCSEG00000015132)	nr3c1 (ENSCSEG00000015111)	kctd16a (ENSCSEG00000015107)	ENSCSEG00000015104	ENSCSEG00000015095	kif3a (ENSCSEG00000015042)	atrx (ENSCSEG00000014977)	fgf16 (ENSCSEG00000014967)	zdhhc15b (ENSCSEG00000014934)	uprt (ENSCSEG00000014930)	abcb7 (ENSCSEG00000014908)	NEXMIF (ENSCSEG00000014901)	RLIM (ENSCSEG00000014889)	glod5 (ENSCSEG00000014879)	irg1l (ENSCSEG00000014865) ##10
Ovalentaria	ANCESTRAL SPECIES	15	ENSGT00550000074618.a.a.lb.a	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000159568	ENSGT00940000159491.ib	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156068.j	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00390000014316.c.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000160067	ENSGT00940000156386	ENSGT00940000155902.c	ENSGT00940000160087	ENSGT00940000158214	ENSGT01020000230412.D.b	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000153941.a.b	ENSGT00390000015700.b ##10	ENSGT00390000015364.a.b.b
Ovalentaria_B	ANCESTRAL SPECIES	13	ENSGT00550000074618.a.a.lb.a	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000159568	ENSGT00940000159491.ib	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156068.j	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00390000014316.c.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000160067	ENSGT00940000156386	ENSGT00940000155902.c	ENSGT00940000160087	ENSGT00940000158214	ENSGT01020000230412.D.b	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000153941.a.b	ENSGT00390000015700.b ##10	ENSGT00390000015364.a.b.b
Pomacentridae	ANCESTRAL SPECIES	4	ENSGT00550000074618.a.a.lb.a	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000159568	ENSGT00940000159491.ib	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156068.j.c	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00390000014316.c.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000155875.lb.b	ENSGT00940000156386	ENSGT00940000155902.c	ENSGT00940000160087	ENSGT00940000158214	ENSGT01020000230412.D.b	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000153941.a.b	ENSGT00390000015700.b ##10	ENSGT00390000015364.a.b.b
Pomacentridae_A	ANCESTRAL SPECIES	17	ENSGT00550000074618.a.a.lb.a	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000159568	ENSGT00940000159491.ib	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156068.j.c	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00390000014316.c.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000155875.lb.b	ENSGT00940000156386	ENSGT00940000155902.c	ENSGT00940000160087	ENSGT00940000158214	ENSGT01020000230412.D.b	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000153941.a.b	ENSGT00390000015700.b ##10	ENSGT00390000015364.a.b.b
Amphiprion	ANCESTRAL SPECIES	32	ENSGT00550000074618.a.a.lb.a	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000159568	ENSGT00940000159491.ib	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156068.j.c	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00390000014316.c.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000155875.lb.a
Clown anemonefish	DUPLICATION
Clown anemonefish	MODERN SPECIES	754						gabra6a (ENSAOCG00000002031)	nudcd2 (ENSAOCG00000016450)	ccng1 (ENSAOCG00000016429)	septin8b (ENSAOCG00000016401)	ENSAOCG00000016374	ENSAOCG00000016364	gdf9 (ENSAOCG00000016348)	uqcrq (ENSAOCG00000016340)	hspa4b (ENSAOCG00000016318)	gnpda1 (ENSAOCG00000016220)	NDFIP1 (ENSAOCG00000016204) ##22	fgf1a (ENSAOCG00000016173)
Clown anemonefish	MODERN SPECIES	3647																NDFIP1 (ENSAOCG00000019262) ##22	fgf1a (ENSAOCG00000019230)	nr3c1 (ENSAOCG00000019197)	kctd16a (ENSAOCG00000019152)
Orange clownfish	MODERN SPECIES	4	ppp2caa (ENSAPEG00000018210)	sfxn1 (ENSAPEG00000018239)	atp7a (ENSAPEG00000018423)	ENSAPEG00000018484	ATP10B (ENSAPEG00000018500)	gabrb2a (ENSAPEG00000018618)	gabra6a (ENSAPEG00000018649)	nudcd2 (ENSAPEG00000018665)	ccng1 (ENSAPEG00000018681)	septin8b (ENSAPEG00000018701)	ENSAPEG00000018738	gdf9 (ENSAPEG00000018761)	uqcrq (ENSAPEG00000018787)	hspa4b (ENSAPEG00000018807)	gnpda1 (ENSAPEG00000018868)	NDFIP1 (ENSAPEG00000018901) ##22	fgf1a (ENSAPEG00000018936)	nr3c1 (ENSAPEG00000018955)	kctd16a (ENSAPEG00000018972)	ENSAPEG00000018977	ENSAPEG00000018986	mif (ENSAPEG00000019008)	ENSAPEG00000019013	nanos1 (ENSAPEG00000019024)	ENSAPEG00000019062	ENSAPEG00000019147	LIMCH1 (ENSAPEG00000019181) ##8	phox2bb (ENSAPEG00000019328)	tmem33 (ENSAPEG00000019346)	bbs7 (ENSAPEG00000019379)	ccna2 (ENSAPEG00000019431)
Spiny chromis	MODERN SPECIES	1647	atp5po (ENSAPOG00000011732)	ppp2caa (ENSAPOG00000011785)	sfxn1 (ENSAPOG00000011816)	atp7a (ENSAPOG00000011912)	ENSAPOG00000011947	ENSAPOG00000012141	gabrb2a (ENSAPOG00000012205)	gabra6a (ENSAPOG00000012354)	nudcd2 (ENSAPOG00000012391)	ccng1 (ENSAPOG00000012427)	septin8b (ENSAPOG00000012502)	gdf9 (ENSAPOG00000012512)	uqcrq (ENSAPOG00000012529)	hspa4b (ENSAPOG00000012626)	gnpda1 (ENSAPOG00000012667)	NDFIP1 (ENSAPOG00000012717) ##22	fgf1a (ENSAPOG00000012746)	nr3c1 (ENSAPOG00000012757)	kctd16a (ENSAPOG00000000342)	ENSAPOG00000012781	kif3a (ENSAPOG00000012902)
Bicolor damselfish	MODERN SPECIES	592							gabra6a (ENSSPAG00000012170)	nudcd2 (ENSSPAG00000012195)	ccng1 (ENSSPAG00000012212)	septin8b (ENSSPAG00000012225)	ENSSPAG00000012250	gdf9 (ENSSPAG00000012258)	uqcrq (ENSSPAG00000012281)	hspa4b (ENSSPAG00000012304)	gnpda1 (ENSSPAG00000012398)	NDFIP1 (ENSSPAG00000012428) ##22	fgf1a (ENSSPAG00000012455)	nr3c1 (ENSSPAG00000012471)	kctd16a (ENSSPAG00000012488)	ENSSPAG00000012495	kif3a (ENSSPAG00000012515)	atrx (ENSSPAG00000012566)	fgf16 (ENSSPAG00000012611)	zdhhc15b (ENSSPAG00000012628)	uprt (ENSSPAG00000012647)	abcb7 (ENSSPAG00000012679)	ENSSPAG00000012741	NEXMIF (ENSSPAG00000012765)	RLIM (ENSSPAG00000012771)	glod5 (ENSSPAG00000012805)	irg1l (ENSSPAG00000012828) ##10
Cichlidae	ANCESTRAL SPECIES	8	ENSGT00940000159568	ENSGT00940000159491.ib	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156068.j	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00940000154393.s.b.a.a	ENSGT00940000163472.e.b.f	ENSGT00390000014316.c.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000160067	ENSGT00940000156386	ENSGT00940000155902.c	ENSGT00940000160087	ENSGT00940000158214	ENSGT01020000230412.D.b	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000153941.a.b	ENSGT00390000015700.b ##10	ENSGT00390000015364.a.b.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	17	ENSGT00940000159491.ib	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156068.j	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00940000163472.e.b.f.c	ENSGT00940000154393.s.b.a.a	ENSGT00940000163472.e.b.f.d	ENSGT00390000014316.c.b.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000160067	ENSGT00940000156386	ENSGT00940000155902.c	ENSGT00940000160087	ENSGT00940000158214	ENSGT01020000230412.D.b	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000153941.a.b	ENSGT00390000015700.b ##10	ENSGT00390000015364.a.b.b
Nile tilapia	MODERN SPECIES	11	ATP10B (ENSONIG00000012921)	gabrb2a (ENSONIG00000012920)	ccng1 (ENSONIG00000028753)	gabra6a (ENSONIG00000012917)	nudcd2 (ENSONIG00000028204)	septin8b (ENSONIG00000012906)	ENSONIG00000040995	gdf9 (ENSONIG00000012904)	uqcrq (ENSONIG00000042672)	hspa4b (ENSONIG00000012895)	ENSONIG00000012894	ENSONIG00000033729	ENSONIG00000041420	ENSONIG00000042271	gnpda1 (ENSONIG00000017916)	NDFIP1 (ENSONIG00000032831) ##22	fgf1a (ENSONIG00000017912)	nr3c1 (ENSONIG00000017907)	kctd16a (ENSONIG00000035407)	ENSONIG00000037866	kif3a (ENSONIG00000017903)	atrx (ENSONIG00000017898)	fgf16 (ENSONIG00000017896)	zdhhc15b (ENSONIG00000017893)	uprt (ENSONIG00000017888)	abcb7 (ENSONIG00000017887)	NEXMIF (ENSONIG00000017886)	RLIM (ENSONIG00000017883)	glod5 (ENSONIG00000017880)	irg1l (ENSONIG00000017876) ##10	ENSONIG00000028291
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	20	ENSGT00940000159491.ib	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156068.j	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00940000163472.e.b.f.c	ENSGT00940000154393.s.b.a.a	ENSGT00940000163472.e.b.f.d	ENSGT00390000014316.c.b.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000160067	ENSGT00940000156386	ENSGT00940000155902.c	ENSGT00940000160087	ENSGT00940000158214	ENSGT01020000230412.D.b	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000153941.a.b	ENSGT00390000015700.b ##10	ENSGT00390000015364.a.b.b
Haplochromini	ANCESTRAL SPECIES	14	ENSGT00940000159568	ENSGT00940000159491.ib	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156068.j	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00940000154393.s.b.a.a	ENSGT00940000163472.e.b.f.d	ENSGT00390000014316.c.b.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000160067	ENSGT00940000156386	ENSGT00940000155902.c	ENSGT00940000160087	ENSGT00940000158214	ENSGT01020000230412.D.b	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000153941.a.b	ENSGT00390000015700.b ##10	ENSGT00390000015364.a.b.b
Haplochromini_A	ANCESTRAL SPECIES	13	ENSGT00940000159568	ENSGT00940000159491.ib	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156068.j	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00940000154393.s.b.a.a	ENSGT00940000163472.e.b.f.d	ENSGT00390000014316.c.b.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000160067	ENSGT00940000156386	ENSGT00940000155902.c	ENSGT00940000160087	ENSGT00940000158214	ENSGT01020000230412.D.b	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000153941.a.b	ENSGT00390000015700.b ##10	ENSGT00390000015364.a.b.b
P. nyererei	MODERN SPECIES	296	atp7a (ENSPNYG00000000282)	ENSPNYG00000000281	ATP10B (ENSPNYG00000000280)	gabrb2a (ENSPNYG00000000279)	gabra6a (ENSPNYG00000000278)	ccng1 (ENSPNYG00000000277)	nudcd2 (ENSPNYG00000000276)	septin8b (ENSPNYG00000000275)	ENSPNYG00000000274	gdf9 (ENSPNYG00000000273)	uqcrq (ENSPNYG00000000272)	hspa4b (ENSPNYG00000000271)	ENSPNYG00000000270	ENSPNYG00000000269	gnpda1 (ENSPNYG00000000268)	NDFIP1 (ENSPNYG00000000267) ##22	fgf1a (ENSPNYG00000000266)	nr3c1 (ENSPNYG00000000265)	kctd16a (ENSPNYG00000000264)	ENSPNYG00000000263	kif3a (ENSPNYG00000000262)	atrx (ENSPNYG00000000261)	fgf16 (ENSPNYG00000000260)	zdhhc15b (ENSPNYG00000000259)	uprt (ENSPNYG00000000258)	abcb7 (ENSPNYG00000000257)	NEXMIF (ENSPNYG00000000255)	RLIM (ENSPNYG00000000254)	glod5 (ENSPNYG00000000253)	irg1l (ENSPNYG00000000252) ##10	ENSPNYG00000000251
Haplochromini_B	ANCESTRAL SPECIES	7	ENSGT00940000159568	ENSGT00940000159491.ib	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156068.j	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00940000163472.e.b.f.c	ENSGT00390000014316.c.b.a	ENSGT00390000014316.c.b.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000155875	ENSGT00940000156386	ENSGT00940000155902.c	ENSGT00940000160087	ENSGT00940000158214	ENSGT01020000230412.D.b	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000153941.a.b	ENSGT00390000015700.b ##10	ENSGT00390000015364.a.b.b
Zebra mbuna	MODERN SPECIES	1102	ENSMZEG00005012070	atp7a (ENSMZEG00005012044)	ENSMZEG00005012032	ENSMZEG00005011985	gabrb2a (ENSMZEG00005011954)	gabra6a (ENSMZEG00005011940)	nudcd2 (ENSMZEG00005011928)	ccng1 (ENSMZEG00005011916)	ENSMZEG00005011910	septin8b (ENSMZEG00005011859)	gdf9 (ENSMZEG00005011841)	uqcrq (ENSMZEG00005011831)	hspa4b (ENSMZEG00005011784)	ENSMZEG00005011744	gnpda1 (ENSMZEG00005011736)	NDFIP1 (ENSMZEG00005011717) ##22	fgf1a (ENSMZEG00005011694)	nr3c1 (ENSMZEG00005011670)	kctd16a (ENSMZEG00005011667)	ENSMZEG00005011658	kif3a (ENSMZEG00005011622)	atrx (ENSMZEG00005011594)	fgf16 (ENSMZEG00005011580)	zdhhc15b (ENSMZEG00005011558)	uprt (ENSMZEG00005011538)	abcb7 (ENSMZEG00005011515)	NEXMIF (ENSMZEG00005011504)	RLIM (ENSMZEG00005011486)	glod5 (ENSMZEG00005011475)	irg1l (ENSMZEG00005011462) ##10	ENSMZEG00005011450
Eastern happy	MODERN SPECIES	11	ENSACLG00000007136	ENSACLG00000007059	ENSACLG00000007051	gabrb2a (ENSACLG00000007014)	gabra6a (ENSACLG00000007004)	nudcd2 (ENSACLG00000006983)	ccng1 (ENSACLG00000006987)	ENSACLG00000006975	septin8b (ENSACLG00000006927)	gdf9 (ENSACLG00000006918)	uqcrq (ENSACLG00000006909)	hspa4b (ENSACLG00000006860)	ENSACLG00000006852	ENSACLG00000006842	gnpda1 (ENSACLG00000006826)	NDFIP1 (ENSACLG00000006807) ##22	fgf1a (ENSACLG00000006803)	nr3c1 (ENSACLG00000006789)	kctd16a (ENSACLG00000006778)	ENSACLG00000006765	kif3a (ENSACLG00000006732)	atrx (ENSACLG00000006093)	fgf16 (ENSACLG00000006080)	zdhhc15b (ENSACLG00000006069)	uprt (ENSACLG00000006041)	abcb7 (ENSACLG00000005983)	NEXMIF (ENSACLG00000005945)	RLIM (ENSACLG00000005931)	glod5 (ENSACLG00000005922)	irg1l (ENSACLG00000005905) ##10	ENSACLG00000005894
Burton s mouthbrooder	MODERN SPECIES	310	sfxn1 (ENSHBUG00000002218)	ENSHBUG00000002199	atp7a (ENSHBUG00000002191)	ENSHBUG00000002173	ATP10B (ENSHBUG00000002153)	gabrb2a (ENSHBUG00000002118)	gabra6a (ENSHBUG00000002098)	nudcd2 (ENSHBUG00000002085)	septin8b (ENSHBUG00000002067)	ENSHBUG00000002052	gdf9 (ENSHBUG00000002047)	uqcrq (ENSHBUG00000000023)	hspa4b (ENSHBUG00000002031)	ENSHBUG00000002006	gnpda1 (ENSHBUG00000001995)	NDFIP1 (ENSHBUG00000001977) ##22	fgf1a (ENSHBUG00000001965)	nr3c1 (ENSHBUG00000000846)	kctd16a (ENSHBUG00000001929)	ENSHBUG00000001923	kif3a (ENSHBUG00000001906)	atrx (ENSHBUG00000001883)	fgf16 (ENSHBUG00000001863)	zdhhc15b (ENSHBUG00000001849)	uprt (ENSHBUG00000001829)	abcb7 (ENSHBUG00000001820)	NEXMIF (ENSHBUG00000001803)	RLIM (ENSHBUG00000001799)	glod5 (ENSHBUG00000001783)	irg1l (ENSHBUG00000001766) ##10	ENSHBUG00000001760
Lyretail cichlid	MODERN SPECIES	292	ENSNBRG00000012470	ATP10B (ENSNBRG00000012486)	gabrb2a (ENSNBRG00000012536)	gabra6a (ENSNBRG00000012568)	nudcd2 (ENSNBRG00000012608)	ccng1 (ENSNBRG00000012614)	septin8b (ENSNBRG00000012635)	ENSNBRG00000012663	gdf9 (ENSNBRG00000012675)	uqcrq (ENSNBRG00000012700)	hspa4b (ENSNBRG00000012719)	ENSNBRG00000012771	ENSNBRG00000012790	ENSNBRG00000012806	gnpda1 (ENSNBRG00000012814)	NDFIP1 (ENSNBRG00000012830) ##22	fgf1a (ENSNBRG00000012859)	nr3c1 (ENSNBRG00000012902)	kctd16a (ENSNBRG00000012932)	kif3a (ENSNBRG00000012952)	atrx (ENSNBRG00000013037)	fgf16 (ENSNBRG00000013118)	zdhhc15b (ENSNBRG00000013213)	uprt (ENSNBRG00000013241)	abcb7 (ENSNBRG00000013270)	NEXMIF (ENSNBRG00000013324)	RLIM (ENSNBRG00000013331)	glod5 (ENSNBRG00000013345)	irg1l (ENSNBRG00000013354) ##10	ENSNBRG00000013370	si:ch211-153b23.4 (ENSNBRG00000013392)
Midas cichlid	MODERN SPECIES	974	ENSACIG00000005895	ATP10B (ENSACIG00000005908)	gabrb2a (ENSACIG00000006008)	gabra6a (ENSACIG00000006028)	nudcd2 (ENSACIG00000006048)	ccng1 (ENSACIG00000006059)	septin8b (ENSACIG00000006078)	ENSACIG00000006092	gdf9 (ENSACIG00000006103)	uqcrq (ENSACIG00000006127)	hspa4b (ENSACIG00000006139)	ENSACIG00000006165	ENSACIG00000006175	ENSACIG00000006213	gnpda1 (ENSACIG00000006237)	ndfip1l (ENSACIG00000006408) ##22	fgf1a (ENSACIG00000006424)	nr3c1 (ENSACIG00000006445)	kctd16a (ENSACIG00000006467)	kif3a (ENSACIG00000006479)	ENSACIG00000006517	atrx (ENSACIG00000006529)	fgf16 (ENSACIG00000006656)	zdhhc15b (ENSACIG00000006665)	uprt (ENSACIG00000006691)	abcb7 (ENSACIG00000006798)	NEXMIF (ENSACIG00000006840)	RLIM (ENSACIG00000006846)	glod5 (ENSACIG00000006872)	ENSACIG00000006921	irg1l (ENSACIG00000006938) ##10
Atherinomorphae	ANCESTRAL SPECIES	9	ENSGT00550000074618.a.a.lb.a	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000159568	ENSGT00940000159491.ib	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156068.j	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00390000014316.c.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000160067	ENSGT00940000156386	ENSGT00940000155902.c	ENSGT00940000160087	ENSGT00940000158214	ENSGT01020000230412.D.b	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000153941.a.b	ENSGT00390000015700.b ##10	ENSGT00390000015364.a.b.b
Cyprinodontiformes	ANCESTRAL SPECIES	8	ENSGT00550000074618.a.a.lb.a	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000159568	ENSGT00940000159491.ib	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156068.j	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00390000014316.c.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000160067	ENSGT00940000156386	ENSGT00940000155902.c	ENSGT00940000160087	ENSGT00940000158214	ENSGT01020000230412.D.b	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000153941.a.b	ENSGT00390000015700.b ##10	ENSGT00390000015364.a.b.b
Cyprinodontoidei	ANCESTRAL SPECIES	19	ENSGT00550000074618.a.a.lb.a	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000159568	ENSGT00940000159491.ib	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156068.j	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00390000014316.c.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000160067	ENSGT00940000156386	ENSGT00940000155902.c	ENSGT00940000160087	ENSGT00940000158214	ENSGT01020000230412.D.b	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000153941.a.b	ENSGT00390000002292.b	ENSGT00940000159591
Poeciliinae	ANCESTRAL SPECIES	11	ENSGT00550000074618.a.a.lb.a	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000159568	ENSGT00940000159491.ib	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156068.j	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00390000014316.c.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000160067	ENSGT00940000156386	ENSGT00940000155902.c	ENSGT00940000160087	ENSGT00940000158214	ENSGT01020000230412.D.b	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000153941.a.b	ENSGT00390000002292.b	ENSGT00940000159591
Poecilia	ANCESTRAL SPECIES	21	ENSGT00390000015060	ENSGT00550000074618.a.a.lb.a	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000159568	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156068.j	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00390000014316.c.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000160067	ENSGT00940000156386	ENSGT00940000155902.c	ENSGT00940000160087	ENSGT00940000158214	ENSGT01020000230412.D.b	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000153941.a.b	ENSGT00390000002292.b	ENSGT00940000159591
NAME_6	ANCESTRAL SPECIES	17	ENSGT00390000015060	ENSGT00550000074618.a.a.lb.a	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000159568	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156068.j	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00390000014316.c.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a.c	ENSGT00940000156071.a	ENSGT00940000160067	ENSGT00940000156386	ENSGT00940000155763.b	ENSGT00940000160087	ENSGT00940000158214	ENSGT01020000230412.D.b	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000153941.a.b	ENSGT00390000002292.b	ENSGT00940000159591
Sailfin molly	MODERN SPECIES	726	atp5po (ENSPLAG00000019724)	ppp2caa (ENSPLAG00000019735)	sfxn1 (ENSPLAG00000019769)	atp7a (ENSPLAG00000019825)	ATP10B (ENSPLAG00000019919)	gabrb2a (ENSPLAG00000019949)	gabra6a (ENSPLAG00000019955)	nudcd2 (ENSPLAG00000019968)	ccng1 (ENSPLAG00000019987)	septin8b (ENSPLAG00000020037)	ENSPLAG00000020053	gdf9 (ENSPLAG00000020060)	uqcrq (ENSPLAG00000020074)	hspa4b (ENSPLAG00000020157)	gnpda1 (ENSPLAG00000020188)	NDFIP1 (ENSPLAG00000020204) ##22	fgf1a (ENSPLAG00000020225)	nr3c1 (ENSPLAG00000020243)
Guppy	MODERN SPECIES	440	ppp2caa (ENSPREG00000005832)	sfxn1 (ENSPREG00000005776)	atp7a (ENSPREG00000005701)	ENSPREG00000005682	ENSPREG00000005574	gabrb2a (ENSPREG00000005395)	gabra6a (ENSPREG00000005300)	nudcd2 (ENSPREG00000005279)	ccng1 (ENSPREG00000005223)	septin8b (ENSPREG00000005197)	SOWAHA (ENSPREG00000005185)	gdf9 (ENSPREG00000005167)	uqcrq (ENSPREG00000005153)	hspa4b (ENSPREG00000005060)	gnpda1 (ENSPREG00000004902)	NDFIP1 (ENSPREG00000004705) ##22	fgf1a (ENSPREG00000004667)	nr3c1 (ENSPREG00000004647)	kctd16a (ENSPREG00000004638)	kif3a (ENSPREG00000004605)	atrx (ENSPREG00000004549)	fgf16 (ENSPREG00000004531)	zdhhc15b (ENSPREG00000004506)	uprt (ENSPREG00000004487)	ENSPREG00000004481	abcb7 (ENSPREG00000004451)	NEXMIF (ENSPREG00000004432)	RLIM (ENSPREG00000004401)	glod5 (ENSPREG00000004385)	slu7 (ENSPREG00000004355)	C1QTNF2 (ENSPREG00000004343)
Platyfish	MODERN SPECIES	15	ppp2caa (ENSXMAG00000009386)	sfxn1 (ENSXMAG00000021185)	atp7a (ENSXMAG00000009349)	ENSXMAG00000009345	ENSXMAG00000009322	gabrb2a (ENSXMAG00000009289)	gabra6a (ENSXMAG00000009263)	nudcd2 (ENSXMAG00000009257)	ccng1 (ENSXMAG00000009248)	septin8b (ENSXMAG00000009231)	ENSXMAG00000024517	gdf9 (ENSXMAG00000009227)	uqcrq (ENSXMAG00000009224)	hspa4b (ENSXMAG00000009200)	gnpda1 (ENSXMAG00000009192)	NDFIP1 (ENSXMAG00000023271) ##22	fgf1a (ENSXMAG00000028252)	nr3c1 (ENSXMAG00000009167)	kctd16a (ENSXMAG00000009166)	ENSXMAG00000009163	kif3a (ENSXMAG00000009145)	atrx (ENSXMAG00000009112)	fgf16 (ENSXMAG00000026062)	zdhhc15b (ENSXMAG00000009092)	uprt (ENSXMAG00000009085)	abcb7 (ENSXMAG00000009070)	NEXMIF (ENSXMAG00000027281)	RLIM (ENSXMAG00000029342)	glod5 (ENSXMAG00000009051)	slu7 (ENSXMAG00000009007)	C1QTNF2 (ENSXMAG00000009006)
NAME_4	ANCESTRAL SPECIES	20	ENSGT00390000015060	ENSGT00550000074618.a.a.lb.a	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000159568	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156068.j	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00390000014316.c.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000160067	ENSGT00940000156386	ENSGT00940000155902.c	ENSGT00940000160087	ENSGT00940000158214	ENSGT01020000230412.D.b	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000153941.a.b	ENSGT00390000002292.b	ENSGT00940000159591
Mummichog	MODERN SPECIES	235	sfxn1 (ENSFHEG00000010194)	atp7a (ENSFHEG00000010286)	ENSFHEG00000010324	ENSFHEG00000010476	gabrb2a (ENSFHEG00000010838)	ENSFHEG00000010902	gabra6a (ENSFHEG00000010938)	ENSFHEG00000010955	ccng1 (ENSFHEG00000010988)	septin8b (ENSFHEG00000011064)	SOWAHA (ENSFHEG00000011082)	gdf9 (ENSFHEG00000011089)	uqcrq (ENSFHEG00000011099)	hspa4b (ENSFHEG00000011152)	gnpda1 (ENSFHEG00000011321)	ndfip1l (ENSFHEG00000011365) ##22	fgf1a (ENSFHEG00000011371)	nr3c1 (ENSFHEG00000011406)	kctd16a (ENSFHEG00000011411)	ENSFHEG00000011417	kif3a (ENSFHEG00000012374)	atrx (ENSFHEG00000012570)	fgf16 (ENSFHEG00000012584)	zdhhc15b (ENSFHEG00000012631)	uprt (ENSFHEG00000012659)	abcb7 (ENSFHEG00000012671)	NEXMIF (ENSFHEG00000012675)	RLIM (ENSFHEG00000012682)	glod5 (ENSFHEG00000012686)	slu7 (ENSFHEG00000012789)	C1QTNF2 (ENSFHEG00000012796)
Sheepshead minnow	MODERN SPECIES	143	si:ch1073-44g3.1 (ENSCVAG00000018022)	atp5po (ENSCVAG00000018053)	sfxn1 (ENSCVAG00000018100)	atp7a (ENSCVAG00000018227)	ENSCVAG00000018459	gabrb2a (ENSCVAG00000018531)	gabra6a (ENSCVAG00000018557)	nudcd2 (ENSCVAG00000018579)	ccng1 (ENSCVAG00000018615)	septin8b (ENSCVAG00000018622)	ENSCVAG00000018636	gdf9 (ENSCVAG00000018658)	uqcrq (ENSCVAG00000018664)	hspa4b (ENSCVAG00000018725)	gnpda1 (ENSCVAG00000018752)	ndfip1l (ENSCVAG00000018760) ##22	fgf1a (ENSCVAG00000018767)	nr3c1 (ENSCVAG00000018781)	kctd16a (ENSCVAG00000018790)	ENSCVAG00000018812	kif3a (ENSCVAG00000018881)	atrx (ENSCVAG00000019038)	fgf16 (ENSCVAG00000019064)	zdhhc15b (ENSCVAG00000019109)	uprt (ENSCVAG00000019149)	ENSCVAG00000019167	abcb7 (ENSCVAG00000019177)	NEXMIF (ENSCVAG00000019187)	RLIM (ENSCVAG00000019216)	glod5 (ENSCVAG00000019223)	slu7 (ENSCVAG00000019302)
Aplocheiloidei	ANCESTRAL SPECIES	25	ENSGT00550000074618.a.a.lb.a	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000159568	ENSGT00940000159491.ib	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156068.j	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00390000014316.c.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000160067	ENSGT00940000156386	ENSGT00940000155902.c	ENSGT00940000160087	ENSGT00940000158214	ENSGT01020000230412.D.b	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000153941.a.b	ENSGT00390000015700.b ##10	ENSGT00390000015364.a.b.b
Mangrove rivulus	MODERN SPECIES	76	atp5po (ENSKMAG00000005723)	ppp2caa (ENSKMAG00000005743)	sfxn1 (ENSKMAG00000005788)	atp7a (ENSKMAG00000005839)	ENSKMAG00000005917	ATP10B (ENSKMAG00000005946)	gabrb2a (ENSKMAG00000005990)	gabra6a (ENSKMAG00000006029)	ccng1 (ENSKMAG00000006091)	nudcd2 (ENSKMAG00000006070)	septin8b (ENSKMAG00000006130)	gdf9 (ENSKMAG00000006187)	uqcrq (ENSKMAG00000006213)	hspa4b (ENSKMAG00000006228)	gnpda1 (ENSKMAG00000006251)	NDFIP1 (ENSKMAG00000006276) ##22	fgf1a (ENSKMAG00000006301)	nr3c1 (ENSKMAG00000006317)	kctd16a (ENSKMAG00000006334)	ENSKMAG00000006343	kif3a (ENSKMAG00000006374)	atrx (ENSKMAG00000006460)	fgf16 (ENSKMAG00000006516)	zdhhc15b (ENSKMAG00000006538)	uprt (ENSKMAG00000006574)	abcb7 (ENSKMAG00000006629)	NEXMIF (ENSKMAG00000006705)	RLIM (ENSKMAG00000006720)	glod5 (ENSKMAG00000006732)	irg1l (ENSKMAG00000006757) ##10	ENSKMAG00000006792
Turquoise killifish	MODERN SPECIES	1610	ppp2caa (ENSNFUG00015011593)	sfxn1 (ENSNFUG00015011550)	atp7a (ENSNFUG00015011036)	ENSNFUG00015010988	ATP10B (ENSNFUG00015010148)	gabrb2a (ENSNFUG00015009964)	gabra6a (ENSNFUG00015009409)	NUDCD2 (ENSNFUG00015009344)	CCNG1 (ENSNFUG00015009320)	SEPT8B (ENSNFUG00015009062)	ENSNFUG00015008927	gdf9 (ENSNFUG00015008903)	uqcrq (ENSNFUG00015003568)	hspa4b (ENSNFUG00015003337)	GNPDA1 (ENSNFUG00015003276)	NDFIP1 (ENSNFUG00015003259) ##22	fgf1a (ENSNFUG00015003249)	nr3c1 (ENSNFUG00015003243)	KCTD16A (ENSNFUG00015003238)	ENSNFUG00015003232	ENSNFUG00015003228	KIF3A (ENSNFUG00015003196)	ENSNFUG00015002548	fgf16 (ENSNFUG00015002447)	zdhhc15b (ENSNFUG00015002436)	UPRT (ENSNFUG00015002431)	ABCB7 (ENSNFUG00015002359)	ENSNFUG00015002337	KIAA2022 (ENSNFUG00015002332)	RLIM (ENSNFUG00015002326)	glod5 (ENSNFUG00015002323)
Oryzias	ANCESTRAL SPECIES	17	ENSGT00390000015060	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000159568	ENSGT00940000159491.ib	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156068.j	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00390000014316.c.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000155763.b	ENSGT00940000160087	ENSGT00940000158214	ENSGT01020000230412.D.b	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000153941.a.b	ENSGT00390000015700.b ##10	ENSGT00390000015364.a.b.b	ENSGT00390000015364.a.b.a	ENSGT00390000003706.a.b.a
Oryzias_b	ANCESTRAL SPECIES	20	ENSGT00390000015060	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000159568	ENSGT00940000159491.ib	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726.nb	ENSGT00940000156068.j	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00390000014316.c.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000155763.b	ENSGT00940000160087	ENSGT00940000158214	ENSGT01020000230412.D.b	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000153941.a.b	ENSGT00390000015700.b ##10	ENSGT00390000015364.a.b.b	ENSGT00390000015364.a.b.a	ENSGT00390000003706.a.b.a
Indian medaka	MODERN SPECIES	16	atp7a (ENSOMEG00000006430)	atp7a (ENSOMEG00000006462)	ENSOMEG00000006486	ENSOMEG00000006549	gabrb2a (ENSOMEG00000006602)	gabra6a (ENSOMEG00000006626)	nudcd2 (ENSOMEG00000006645)	ccng1 (ENSOMEG00000006662)	septin8b (ENSOMEG00000006717)	ENSOMEG00000006740	ENSOMEG00000006754	gdf9 (ENSOMEG00000006786)	uqcrq (ENSOMEG00000006769)	hspa4b (ENSOMEG00000006864)	gnpda1 (ENSOMEG00000007063)	NDFIP1 (ENSOMEG00000007123) ##22	fgf1a (ENSOMEG00000007095)	nr3c1 (ENSOMEG00000007143)	kctd16a (ENSOMEG00000007154)	ENSOMEG00000007171	ENSOMEG00000007212	atrx (ENSOMEG00000007314)	fgf16 (ENSOMEG00000007350)	zdhhc15b (ENSOMEG00000007372)	uprt (ENSOMEG00000007408)	abcb7 (ENSOMEG00000007510)	NEXMIF (ENSOMEG00000007555)	RLIM (ENSOMEG00000007604)	irg1l (ENSOMEG00000007624) ##10	ENSOMEG00000007661	si:ch211-153b23.4 (ENSOMEG00000007682)
Javanese ricefish	MODERN SPECIES	1	si:ch1073-44g3.1 (ENSOJAG00000008394)	atp5po (ENSOJAG00000008337)	sfxn1 (ENSOJAG00000008146)	atp7a (ENSOJAG00000005482)	ENSOJAG00000005362	ENSOJAG00000005331	gabrb2a (ENSOJAG00000005159)	gabra6a (ENSOJAG00000005113)	nudcd2 (ENSOJAG00000005099)	ccng1 (ENSOJAG00000005080)	septin8b (ENSOJAG00000003941)	ENSOJAG00000003592	gdf9 (ENSOJAG00000003573)	hspa4b (ENSOJAG00000003361)	gnpda1 (ENSOJAG00000003314)	NDFIP1 (ENSOJAG00000003298) ##22	kctd16a (ENSOJAG00000003295)	ENSOJAG00000003290	ENSOJAG00000002599	fgf16 (ENSOJAG00000002402)	uprt (ENSOJAG00000002347)	abcb7 (ENSOJAG00000001874)	NEXMIF (ENSOJAG00000001698)	RLIM (ENSOJAG00000001682)	glod5 (ENSOJAG00000001672)	irg1l (ENSOJAG00000001640) ##10	ENSOJAG00000001615	si:ch211-153b23.4 (ENSOJAG00000001597)	si:ch211-153b23.5 (ENSOJAG00000001579)	zgc:174917 (ENSOJAG00000022614)	ENSOJAG00000022608
Oryzias_a	ANCESTRAL SPECIES	22	ENSGT00390000015060	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000159568	ENSGT00940000159491.ib	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156068.j	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00390000014316.c.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000155875	ENSGT00940000155902.c	ENSGT00940000160087	ENSGT00940000158214	ENSGT01020000230412.D.b	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000153941.a.b	ENSGT00390000015700.b ##10	ENSGT00390000015364.a.b.b	ENSGT00390000015364.a.b.a
Japanese Medaka HdrR	MODERN SPECIES	1	atp5po (ENSORLG00000005539)	sfxn1 (ENSORLG00000005583)	atp7a (ENSORLG00000005709)	atp7a (ENSORLG00000022734)	ENSORLG00000005735	gabrb2a (ENSORLG00000005749)	gabra6a (ENSORLG00000005768)	nudcd2 (ENSORLG00000005782)	ccng1 (ENSORLG00000005817)	septin8b (ENSORLG00000005830)	ENSORLG00000005833	gdf9 (ENSORLG00000024393)	uqcrq (ENSORLG00000024706)	hspa4b (ENSORLG00000005958)	gnpda1 (ENSORLG00000005988)	ENSORLG00000006004 ##22	fgf1a (ENSORLG00000006013)	nr3c1 (ENSORLG00000006022)	kctd16a (ENSORLG00000006030)	ENSORLG00000006035	atrx (ENSORLG00000006075)	fgf16 (ENSORLG00000006087)	zdhhc15b (ENSORLG00000006098)	uprt (ENSORLG00000006109)	abcb7 (ENSORLG00000006120)	NEXMIF (ENSORLG00000006123)	RLIM (ENSORLG00000026942)	glod5 (ENSORLG00000006138)	irg1l (ENSORLG00000006152) ##10	ENSORLG00000006161	si:ch211-153b23.4 (ENSORLG00000006169)
Chinese medaka	MODERN SPECIES	25	atp5po (ENSOSIG00000022552)	sfxn1 (ENSOSIG00000022558)	atp7a (ENSOSIG00000022613)	ENSOSIG00000022700	ENSOSIG00000022726	gabrb2a (ENSOSIG00000022737)	gabra6a (ENSOSIG00000022740)	nudcd2 (ENSOSIG00000022743)	ccng1 (ENSOSIG00000022744)	septin8b (ENSOSIG00000022829)	ENSOSIG00000023145	gdf9 (ENSOSIG00000023148)	uqcrq (ENSOSIG00000023150)	hspa4b (ENSOSIG00000023185)	gnpda1 (ENSOSIG00000023363)	NDFIP1 (ENSOSIG00000023366) ##22	nr3c1 (ENSOSIG00000023373)	kctd16a (ENSOSIG00000023377)	ENSOSIG00000023382	atrx (ENSOSIG00000023448)	fgf16 (ENSOSIG00000023511)	zdhhc15b (ENSOSIG00000023515)	uprt (ENSOSIG00000000044)	abcb7 (ENSOSIG00000000134)	NEXMIF (ENSOSIG00000000261)	RLIM (ENSOSIG00000000265)	glod5 (ENSOSIG00000000272)	irg1l (ENSOSIG00000000290) ##10	ENSOSIG00000000306	si:ch211-153b23.4 (ENSOSIG00000000309)	si:ch211-153b23.5 (ENSOSIG00000000311)
Pinecone sodierfish	MODERN SPECIES	1	ATP5PO (ENSMMDG00005015677)	ppp2caa (ENSMMDG00005015670)	sfxn1 (ENSMMDG00005015666)	atp7a (ENSMMDG00005014714)	ENSMMDG00005014697	ATP10B (ENSMMDG00005014682)	gabrb2a (ENSMMDG00005014669)	gabra6a (ENSMMDG00005014620)	nudcd2 (ENSMMDG00005014614)	ccng1 (ENSMMDG00005014612)	septin8b (ENSMMDG00005014605)	ENSMMDG00005014601	gdf9 (ENSMMDG00005014599)	hspa4b (ENSMMDG00005013815)	gnpda1 (ENSMMDG00005013790)	NDFIP1 (ENSMMDG00005013785) ##22	fgf1a (ENSMMDG00005013782)	nr3c1 (ENSMMDG00005013698)	kctd16a (ENSMMDG00005013696)	ENSMMDG00005013694	kif3a (ENSMMDG00005012985)	atrx (ENSMMDG00005009742)	fgf16 (ENSMMDG00005009699)	zdhhc15b (ENSMMDG00005009664)	uprt (ENSMMDG00005009648)	abcb7 (ENSMMDG00005008126)	NEXMIF (ENSMMDG00005008082)	RLIM (ENSMMDG00005008081)	glod5 (ENSMMDG00005008078)	irg1l (ENSMMDG00005008072) ##10	si:ch211-153b23.4 (ENSMMDG00005008068)
Cod	MODERN SPECIES	1	zdhhc9 (ENSGMOG00000005283)	SASH3 (ENSGMOG00000005306)	xpnpep2 (ENSGMOG00000005338)	ENSGMOG00000023833	ocrl (ENSGMOG00000005366)	ENSGMOG00000005419	clic2 (ENSGMOG00000005434)	urp1 (ENSGMOG00000026552)	ENSGMOG00000020191	ENSGMOG00000005450	ENSGMOG00000005532	ENSGMOG00000030469	ENSGMOG00000032759	hspa4b (ENSGMOG00000005602)	gnpda1 (ENSGMOG00000005643)	ENSGMOG00000024027 ##22	fgf1a (ENSGMOG00000005658)	nr3c1 (ENSGMOG00000005668)	kctd16a (ENSGMOG00000005691)	ENSGMOG00000022664	kif3a (ENSGMOG00000005722)	ENSGMOG00000005751	zdhhc15b (ENSGMOG00000005836)	UPRT (ENSGMOG00000005875)	NEXMIF (ENSGMOG00000020192)	RLIM (ENSGMOG00000031968)	RLIM (ENSGMOG00000029618)	glod5 (ENSGMOG00000005960)	irg1l (ENSGMOG00000031965) ##10	zgc:174917 (ENSGMOG00000025367)	irg1l (ENSGMOG00000006039) ##10
Protacanthopterygii	ANCESTRAL SPECIES	62	ENSGT00550000074618.a.a.lb.a	ENSGT01030000234641.b.a.b.a.b	ENSGT00940000159568	ENSGT00940000159491	ENSGT00940000159531	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156068.j	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000004029	ENSGT00940000156067.g.b	ENSGT00390000014316.c.b	ENSGT00390000012721.a.g.b ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000160067	ENSGT00940000156386	ENSGT00940000178948	ENSGT00940000156123.a.b	ENSGT00940000159580	ENSGT00940000167495	ENSGT00390000006915.c.d.a	ENSGT00940000160481	ENSGT00940000158983	ENSGT00530000063872.A ##16	ENSGT00940000158229	ENSGT00940000157209
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	276				ENSGT00940000154245.A.kb.d	ENSGT00940000156722.b.d	ENSGT00940000172088	ENSGT00940000154726.rb.a	ENSGT00940000156068.j.f	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784.k	ENSGT00390000004029.c.b	ENSGT00940000156067.g.b.f	ENSGT00390000004029.c.a.b	ENSGT00940000156067.g.b.e.b	ENSGT00390000014316.c.b.e.a	ENSGT00390000012721.a.g.b.c ##22	ENSGT00940000165035.a	ENSGT00940000156385.a.f	ENSGT00940000156071.a.h	ENSGT00940000155875.s.a.b	ENSGT00940000156386.n	ENSGT00940000178948.a	ENSGT00940000156123.a.b	ENSGT00940000159580	ENSGT00940000167495.d	ENSGT00390000006915.c.d.a.e	ENSGT00940000160481.h	ENSGT00940000158983	ENSGT00530000063872.A.c ##16	ENSGT00940000158229.g	ENSGT00940000157209.f
Huchen	MODERN SPECIES	2774							ENSHHUG00000005036	ENSHHUG00000005023	ccng1 (ENSHHUG00000004980)	septin8b (ENSHHUG00000004894)	ENSHHUG00000004888	gdf9 (ENSHHUG00000004878)	uqcrq (ENSHHUG00000004865)	hspa4b (ENSHHUG00000003517)	gnpda1 (ENSHHUG00000003499)	NDFIP1 (ENSHHUG00000003319) ##22	fgf1a (ENSHHUG00000003306)	nr3c1 (ENSHHUG00000003278)
Salmoninae_a	ANCESTRAL SPECIES	18	ENSGT00940000159568.k.a	ENSGT00940000159491	ENSGT00940000159531.f	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b.d	ENSGT00940000172088	ENSGT00940000154726.rb.a	ENSGT00940000156068.j.f	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784.k	ENSGT00390000004029.c.b	ENSGT00940000156067.g.b.f	ENSGT00390000004029.c.a.b	ENSGT00940000156067.g.b.e.b	ENSGT00390000014316.c.b.e.a	ENSGT00390000012721.a.g.b.c ##22	ENSGT00940000165035.a	ENSGT00940000156385.a.f	ENSGT00940000156071.a.h	ENSGT00940000155875.s.a.b	ENSGT00940000156386.n	ENSGT00940000178948.a	ENSGT00940000156123.a.b	ENSGT00940000159580.r.b	ENSGT00940000167495.c	ENSGT00390000006915.c.d.a.f.b	ENSGT00940000160481.g	ENSGT00530000063872.A.d ##16	ENSGT00940000158229.h	ENSGT00940000157209.e	ENSGT00440000040163.f
Oncorhynchus	ANCESTRAL SPECIES	45	ENSGT00550000074618.a.a.lb.a.d	ENSGT01030000234641.b.a.b.a.b.q.b	ENSGT00940000159568.k.a	ENSGT00940000159491.gb	ENSGT00940000154245.A.jb.b.a	ENSGT00940000156722.b.d	ENSGT00940000172088	ENSGT00940000154726.rb.a	ENSGT00940000156068.j.f	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784.k	ENSGT00390000004029.c.b	ENSGT00940000156067.g.b.f	ENSGT00940000156067.g.b.e.b	ENSGT00390000014316.c.b.e.a	ENSGT00390000012721.a.g.b.c ##22	ENSGT00940000165035.a	ENSGT00940000156385.a.f	ENSGT00940000156071.a.h	ENSGT00940000155875.s.a.b	ENSGT00940000156386.n	ENSGT00940000178948.a	ENSGT00940000156123.a.b	ENSGT00940000159580.r.b	ENSGT00940000167495.c	ENSGT00390000006915.c.d.a.f.b	ENSGT00940000160481.g	ENSGT00530000063872.A.d ##16	ENSGT00940000158229.h	ENSGT00940000157209.e	ENSGT00440000040163.f
Oncorhynchus_a	ANCESTRAL SPECIES	46	ENSGT00550000074618.a.a.lb.a.d	ENSGT01030000234641.b.a.b.a.b.q.b	ENSGT00940000159568.k.a	ENSGT00940000159491.gb	ENSGT00940000154245.A.jb.b.a	ENSGT00940000156722.b.d	ENSGT00940000172088	ENSGT00940000154726.rb.a	ENSGT00940000156068.j.f	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784.k	ENSGT00390000004029.c.b	ENSGT00940000156067.g.b.f.a	ENSGT00940000156067.g.b.e.b	ENSGT00390000014316.c.b.e.a	ENSGT00390000012721.a.g.b.c ##22	ENSGT00940000165035.a	ENSGT00940000156385.a.f	ENSGT00940000156071.a.h	ENSGT00940000155875.s.a.b	ENSGT00940000156386.n	ENSGT00940000178948.a	ENSGT00940000156123.a.b	ENSGT00940000159580.r.b	ENSGT00940000167495.c	ENSGT00390000006915.c.d.a.f.b	ENSGT00940000160481.g	ENSGT00530000063872.A.d ##16	ENSGT00940000158229.h	ENSGT00940000157209.e	ENSGT00440000040163.f
Chinook salmon	MODERN SPECIES	13	sfxn1 (ENSOTSG00005014319)	atp7a (ENSOTSG00005014313)	ENSOTSG00005014311	ENSOTSG00005014310	ENSOTSG00005014307	gabra6a (ENSOTSG00005014306)	ENSOTSG00005014304	ccng1 (ENSOTSG00005014248)	septin8b (ENSOTSG00005014180)	ENSOTSG00005014178	gdf9 (ENSOTSG00005014177)	uqcrq (ENSOTSG00005014174)	ENSOTSG00005014117	hspa4b (ENSOTSG00005007462)	gnpda1 (ENSOTSG00005007439)	NDFIP1 (ENSOTSG00005007434) ##22	fgf1a (ENSOTSG00005007432)	nr3c1 (ENSOTSG00005007431)	kctd16a (ENSOTSG00005007430)	ENSOTSG00005007429	ENSOTSG00005007428	OGT (ENSOTSG00005002927)	ENSOTSG00005002848	ENSOTSG00005002843	gcna (ENSOTSG00005002841)	CETN1 (ENSOTSG00005002837)	nsdhl (ENSOTSG00005002829)	FRMPD3 (ENSOTSG00005002826)	prps1b (ENSOTSG00005002824)	SLC25A53 (ENSOTSG00005002816)	tmsb1 (ENSOTSG00005002814)
Coho salmon	MODERN SPECIES	10	si:ch1073-44g3.1 (ENSOKIG00005012887)	ppp2caa (ENSOKIG00005012858)	sfxn1 (ENSOKIG00005012833)	atp7a (ENSOKIG00005010437)	ENSOKIG00005010250	gabrb2a (ENSOKIG00005010038)	gabra6a (ENSOKIG00005010017)	ENSOKIG00005010005	ccng1 (ENSOKIG00005009983)	ENSOKIG00005009966	septin8b (ENSOKIG00005009718)	ENSOKIG00005009690	UQCRQ (ENSOKIG00005009683)	hspa4b (ENSOKIG00005008739)	gnpda1 (ENSOKIG00005008508)	NDFIP1 (ENSOKIG00005008602) ##22	fgf1a (ENSOKIG00005008480)	nr3c1 (ENSOKIG00005008463)	ENSOKIG00005008447	kctd16a (ENSOKIG00005008439)	ENSOKIG00005008430	kif3a (ENSOKIG00005006479)	ENSOKIG00005006387	ENSOKIG00005006367	ENSOKIG00005006298	ENSOKIG00005006270	ENSOKIG00005006257	nlgn3a (ENSOKIG00005006011)	pcdh20 (ENSOKIG00005005965)	plp1a (ENSOKIG00005005942)	RAB9B (ENSOKIG00005005924)
Rainbow trout	MODERN SPECIES	5	ENSOMYG00000025082	sfxn1 (ENSOMYG00000025096)	atp7a (ENSOMYG00000024304)	ENSOMYG00000058132	gabrb2a (ENSOMYG00000024015)	gabra6a (ENSOMYG00000024007)	ENSOMYG00000023997	ccng1 (ENSOMYG00000023986)	ENSOMYG00000023976	ENSOMYG00000023955	ENSOMYG00000023932	ENSOMYG00000023920	ENSOMYG00000008327	hspa4b (ENSOMYG00000023264)	gnpi (ENSOMYG00000022957)	n4wbp5 (ENSOMYG00000022835) ##22	nr3c1 (ENSOMYG00000022763)	kctd16a (ENSOMYG00000022748)	ENSOMYG00000050452	ENSOMYG00000022735	kif3a (ENSOMYG00000021663)	ENSOMYG00000021425	ENSOMYG00000043440	ENSOMYG00000050020	nlgn3a (ENSOMYG00000025033)	pcdh20 (ENSOMYG00000021393)	plp1a (ENSOMYG00000021382)	ENSOMYG00000021364	ENSOMYG00000021322	ENSOMYG00000021296	gcna (ENSOMYG00000021270)
Salmo	ANCESTRAL SPECIES	24	ENSGT00940000155027.c.a.f	ENSGT00390000014889.a.a	ENSGT00550000074618.a.a.lb.a.d	ENSGT01030000234641.b.a.b.a.b.q.b	ENSGT00940000159568.k.a	ENSGT00940000154245.A.jb.b.c	ENSGT00940000156722.b.d	ENSGT00940000172088	ENSGT00940000154726.rb.a	ENSGT00940000156068.j.f	ENSGT00950000183003.a.a.a.a.b.d.m	ENSGT00940000159784.k	ENSGT00390000004029.c.a.b	ENSGT00940000156067.g.b.e.b	ENSGT00390000014316.c.b.e.a	ENSGT00390000012721.a.g.b.c ##22	ENSGT00940000165035.a	ENSGT00940000156385.a.f	ENSGT00940000156071.a.h	ENSGT00940000155875.s.a.b	ENSGT00940000156386.n	ENSGT00940000178948.a	ENSGT00940000156123.a.a	ENSGT00940000159580.r.b	ENSGT00940000167495.c	ENSGT00390000006915.c.d.a.f.b	ENSGT00940000160481.g	ENSGT00530000063872.A.d ##16	ENSGT00940000158229.h	ENSGT00940000157209.e	ENSGT00440000040163.f
Atlantic salmon	MODERN SPECIES	24	ENSSSAG00000040045	ENSSSAG00000119037	si:ch1073-44g3.1 (ENSSSAG00000042224)	pp2aa (ENSSSAG00000042241)	sfxn1 (ENSSSAG00000054175)	ENSSSAG00000041826	gabrb2a (ENSSSAG00000075781)	gabra6a (ENSSSAG00000042446)	ENSSSAG00000042485	ccng1 (ENSSSAG00000109221)	ENSSSAG00000044568	ENSSSAG00000042721	ENSSSAG00000095278	ENSSSAG00000109728	ENSSSAG00000042995	ENSSSAG00000061598 ##22	nr3c1 (ENSSSAG00000062169)	ENSSSAG00000089870	kctd16a (ENSSSAG00000062280)	ENSSSAG00000062323	kif3a (ENSSSAG00000062434)	ENSSSAG00000116463	ENSSSAG00000098977	ENSSSAG00000103923	ENSSSAG00000115877	ENSSSAG00000119562	ENSSSAG00000066568	nlgn3a (ENSSSAG00000121237)	ENSSSAG00000091201	ENSSSAG00000014649	ENSSSAG00000104374
River trout	MODERN SPECIES	22	slu7 (ENSSTUG00000001922)	ENSSTUG00000002382	si:ch1073-44g3.1 (ENSSTUG00000003074)	ppp2caa (ENSSTUG00000003079)	sfxn1 (ENSSTUG00000003096)	gabrb2a (ENSSTUG00000003134)	gabra6a (ENSSTUG00000003335)	ENSSTUG00000003459	ccng1 (ENSSTUG00000003509)	septin8b (ENSSTUG00000003576)	ENSSTUG00000004294	gdf9 (ENSSTUG00000004307)	uqcrq (ENSSTUG00000004319)	hspa4b (ENSSTUG00000004613)	gnpda1 (ENSSTUG00000012209)	NDFIP1 (ENSSTUG00000012258) ##22	fgf1a (ENSSTUG00000012303)	nr3c1 (ENSSTUG00000012316)	ENSSTUG00000012457	kctd16a (ENSSTUG00000012472)	ENSSTUG00000012485	kif3a (ENSSTUG00000012540)	ENSSTUG00000012827	ENSSTUG00000012860	ENSSTUG00000012893	ENSSTUG00000013169	ENSSTUG00000013174	ENSSTUG00000013192	pcdh20 (ENSSTUG00000013208)	plp1a (ENSSTUG00000013214)	RAB9B (ENSSTUG00000013251)
Salmoninae	ANCESTRAL SPECIES	293	ENSGT00390000014889.a.a	ENSGT00550000074618.a.a.lb.a.d	ENSGT01030000234641.b.a.b.a.b.q.b	ENSGT00940000159568.k.a	ENSGT00940000159491	ENSGT00940000159531.f	ENSGT00940000154245.A.jb.b	ENSGT00940000156722.b.c	ENSGT00390000001644	ENSGT00940000154726.rb.b	ENSGT00940000156068.j.e	ENSGT00940000159784.l	ENSGT00390000004029.d	ENSGT00940000156067.g.b.e.a	ENSGT00390000014316.c.b.e.b	ENSGT00390000012721.a.g.b.d ##22	ENSGT00940000156385.a.e	ENSGT00940000156071.a.g	ENSGT00940000155875.s.a.a	ENSGT00940000156386.m	ENSGT00940000178948.b
Huchen	MODERN SPECIES	2625													uqcrq (ENSHHUG00000019549)	hspa4b (ENSHHUG00000019155)	gnpda1 (ENSHHUG00000018988)	NDFIP1 (ENSHHUG00000019037) ##22	nr3c1 (ENSHHUG00000018930)	kctd16a (ENSHHUG00000018924)
Salmoninae_a	ANCESTRAL SPECIES	41							ENSGT00940000154245.A.kb.d	ENSGT00940000156722.b.c	ENSGT00390000001644	ENSGT00940000154726.rb.b	ENSGT00940000156068.j.e	ENSGT00940000159784.l	ENSGT00390000004029.d	ENSGT00940000156067.g.b.e.a	ENSGT00390000014316.c.b.e.b	ENSGT00390000012721.a.g.b.d ##22	ENSGT00940000156385.a.e	ENSGT00940000156071.a.g	ENSGT00940000155875.s.a.a	ENSGT00940000156386.m	ENSGT00940000178948.b	ENSGT00390000006915.c.d.a.f.a	ENSGT00940000160481.h	ENSGT00940000158983	ENSGT00530000063872.A.c ##16	ENSGT00940000158229.g	ENSGT00940000157209.f	ENSGT00440000040163.e	ENSGT00940000155085.c	ENSGT00940000155128.a.a.b.c.a	ENSGT00940000163331.a.b.e
Oncorhynchus	ANCESTRAL SPECIES	34	ENSGT00390000015060.jb	ENSGT00550000074618.a.a.lb.a.c	ENSGT01030000234641.b.a.b.a.b.q.a	ENSGT00940000159568.k.b	ENSGT00940000159491.fb	ENSGT00940000159531.f	ENSGT00940000154245.A.jb.b.b	ENSGT00940000156722.b.c	ENSGT00390000001644	ENSGT00940000154726.rb.b	ENSGT00940000156068.j.e	ENSGT00940000159784.l	ENSGT00390000004029.d	ENSGT00940000156067.g.b.e.a	ENSGT00390000014316.c.b.e.b	ENSGT00390000012721.a.g.b.d ##22	ENSGT01030000237240	ENSGT00940000156385.a.e	ENSGT00940000156071.a.g	ENSGT00940000155875.s.a.a	ENSGT00940000156386.m	ENSGT00940000178948.b.b	ENSGT00940000159580.r.a	ENSGT00940000167495.d	ENSGT00390000006915.c.d.a.e	ENSGT00940000160481.h	ENSGT00940000158983	ENSGT00530000063872.A.c ##16	ENSGT00940000158229.g	ENSGT00940000157209.f	ENSGT00440000040163.e
Oncorhynchus_a	ANCESTRAL SPECIES	34	ENSGT00390000015060.jb	ENSGT00940000168767	ENSGT01030000234641.b.a.b.a.b.q.a	ENSGT00940000159568.k.b	ENSGT00940000159491.fb	ENSGT00940000159531.f	ENSGT00940000154245.A.jb.b.b	ENSGT00940000156722.b.c	ENSGT00390000001644	ENSGT00940000154726.rb.b	ENSGT00940000156068.j.e	ENSGT00940000159784.l	ENSGT00390000004029.d	ENSGT00940000156067.g.b.e.a	ENSGT00390000014316.c.b.e.b	ENSGT00390000012721.a.g.b.d ##22	ENSGT01030000237240	ENSGT00940000156385.a.e	ENSGT00940000156071.a.g	ENSGT00940000155875.s.a.a	ENSGT00940000156386.m	ENSGT00940000178948.b.b	ENSGT00940000159580.q	ENSGT00940000167495.d	ENSGT00390000006915.c.d.a.e	ENSGT00940000160481.h	ENSGT00940000158983	ENSGT00530000063872.A.c ##16	ENSGT00940000175313	ENSGT00940000163331.a.b.e	ENSGT00940000163673.c.b.a
Chinook salmon	MODERN SPECIES	22	naxd (ENSOTSG00005013577)	rab20 (ENSOTSG00005013576)	ENSOTSG00005013573	ENSOTSG00005013569	ENSOTSG00005013566	IRS2 (ENSOTSG00005013565)	ENSOTSG00005013562	gabra6a (ENSOTSG00005013559)	nudcd2 (ENSOTSG00005013558)	ccng1 (ENSOTSG00005013556)	septin8b (ENSOTSG00005013555)	gdf9 (ENSOTSG00005013554)	uqcrq (ENSOTSG00005013553)	hspa4b (ENSOTSG00005001398)	gnpda1 (ENSOTSG00005001288)	NDFIP1 (ENSOTSG00005001050) ##22	ENSOTSG00005001040	nr3c1 (ENSOTSG00005000998)	kctd16a (ENSOTSG00005000993)	letm1 (ENSOTSG00005000653)	nsd2 (ENSOTSG00005000633)	jade1 (ENSOTSG00005000552)	ENSOTSG00005000545	ENSOTSG00005000541	abhd13 (ENSOTSG00005000537)	NALF1 (ENSOTSG00005000532)	ENSOTSG00005000528	pdzk1 (ENSOTSG00005000523)	GPR89B (ENSOTSG00005000500)	zgc:113337 (ENSOTSG00005000493)	ENSOTSG00005000487
Coho salmon	MODERN SPECIES	6	ppp2caa (ENSOKIG00005024148)	sfxn1 (ENSOKIG00005024192)	ENSOKIG00005024214	atp7a (ENSOKIG00005024424)	ENSOKIG00005029818	ENSOKIG00005029824	ENSOKIG00005029838	gabrb2a (ENSOKIG00005029890)	gabra6a (ENSOKIG00005030584)	nudcd2 (ENSOKIG00005030598)	ccng1 (ENSOKIG00005030627)	SEPTIN8 (ENSOKIG00005030725)	gdf9 (ENSOKIG00005031422)	hspa4b (ENSOKIG00005031533)	gnpda1 (ENSOKIG00005033314)	NDFIP1 (ENSOKIG00005033386) ##22	nr3c1 (ENSOKIG00005033418)	kctd16a (ENSOKIG00005033589)	ENSOKIG00005033602	kif3a (ENSOKIG00005033698)	ENSOKIG00005034586	ENSOKIG00005034608	ENSOKIG00005034615	ENSOKIG00005034639	ENSOKIG00005034842	nlgn3a (ENSOKIG00005034853)	ENSOKIG00005034878	ENSOKIG00005034888	plp1a (ENSOKIG00005034940)	ENSOKIG00005034988	RAB9B (ENSOKIG00005034999)
Rainbow trout	MODERN SPECIES	23	sfxn1 (ENSOMYG00000074939)	ENSOMYG00000072484	atp7a (ENSOMYG00000036926)	ENSOMYG00000037031	ENSOMYG00000050877	gabrb2a (ENSOMYG00000048690)	gabra6a (ENSOMYG00000058409)	nudcd2 (ENSOMYG00000066428)	ccng1 (ENSOMYG00000037382)	ENSOMYG00000052219	ENSOMYG00000049190	ENSOMYG00000037400	ENSOMYG00000038105	nr3c1 (ENSOMYG00000042542)	gnpda1 (ENSOMYG00000042464)	ENSOMYG00000042482 ##22	ENSOMYG00000042508	kctd16a (ENSOMYG00000042592)	ENSOMYG00000042598	kif3a (ENSOMYG00000042606)	ENSOMYG00000042618	ENSOMYG00000072202	nlgn3a (ENSOMYG00000048600)	ENSOMYG00000043389	plp1a (ENSOMYG00000043374)	ENSOMYG00000048155	fut11 (ENSOMYG00000043348)	ENSOMYG00000050473 ##16	nsdhl (ENSOMYG00000043339)	ENSOMYG00000043333	ENSOMYG00000060901
Salmo	ANCESTRAL SPECIES	83	ENSGT00550000074618.a.a.lb.a.c	ENSGT01030000234641.b.a.b.a.b.q.a	ENSGT00940000159568.k.b	ENSGT00940000159491	ENSGT00940000159531.f	ENSGT00940000154245.A.jb.b.d	ENSGT00940000156722.b.c	ENSGT00390000001644	ENSGT00940000154726.rb.b	ENSGT00940000156068.j.e	ENSGT00950000183003.a.a.a.a.b.d.n	ENSGT00940000159784.l	ENSGT00390000004029.d	ENSGT00940000156067.g.b.e.a	ENSGT00390000014316.c.b.e.b	ENSGT00390000012721.a.g.b.d ##22	ENSGT00940000156385.a.e	ENSGT00940000156071.a.g	ENSGT00940000155875.s.a.a	ENSGT00940000156386.m
River trout	MODERN SPECIES	4	ppp2caa (ENSSTUG00000019616)	sfxn1 (ENSSTUG00000019578)	atp7a (ENSSTUG00000016187)	ENSSTUG00000016085	ATP10B (ENSSTUG00000015967)	gabrb2a (ENSSTUG00000015821)	gabra6a (ENSSTUG00000015727)	nudcd2 (ENSSTUG00000015706)	ccng1 (ENSSTUG00000015693)	septin8b (ENSSTUG00000013403)	gdf9 (ENSSTUG00000013326)	uqcrq (ENSSTUG00000013319)	hspa4b (ENSSTUG00000011561)	gnpda1 (ENSSTUG00000011406)	ENSSTUG00000011381	NDFIP1 (ENSSTUG00000011346) ##22	nr3c1 (ENSSTUG00000011302)	ENSSTUG00000011294	kctd16a (ENSSTUG00000011280)	ENSSTUG00000011278	ENSSTUG00000011269	ENSSTUG00000011262	kif3a (ENSSTUG00000009981)	ENSSTUG00000009941	ENSSTUG00000008719	plp1a (ENSSTUG00000008673)	RAB9B (ENSSTUG00000008655)	fut11 (ENSSTUG00000008630)	ENSSTUG00000008546 ##16	nsdhl (ENSSTUG00000008522)	ENSSTUG00000008511
Atlantic salmon	MODERN SPECIES	28	si:ch1073-44g3.1 (ENSSSAG00000097474)	pp2aa (ENSSSAG00000054285)	sfxn1 (ENSSSAG00000105560)	atp7a (ENSSSAG00000108486)	ENSSSAG00000054150	ENSSSAG00000054027	gabrb2a (ENSSSAG00000105666)	gabra6a (ENSSSAG00000053996)	NUDC2 (ENSSSAG00000053984)	ccng1 (ENSSSAG00000102112)	ENSSSAG00000053980	ENSSSAG00000042611	ENSSSAG00000044301	hspa4b (ENSSSAG00000039557)	gnpda1 (ENSSSAG00000044271)	ENSSSAG00000038700 ##22	fgf1a (ENSSSAG00000037964)	nr3c1 (ENSSSAG00000121753)	kctd16a (ENSSSAG00000086914)	ENSSSAG00000068195	ENSSSAG00000068150	13b2 (ENSSSAG00000068142)	gria1a (ENSSSAG00000106340)	ENSSSAG00000041820	ENSSSAG00000092242	ENSSSAG00000041995	itk (ENSSSAG00000041613)	ENSSSAG00000015374	cyfip2 (ENSSSAG00000015924)	hmmr (ENSSSAG00000041733)	ENSSSAG00000041797
Northern pike	MODERN SPECIES	3	si:ch1073-44g3.1 (ENSELUG00000022674)	ATP5PO (ENSELUG00000022874)	ppp2caa (ENSELUG00000022917)	sfxn1 (ENSELUG00000022974)	atp7a (ENSELUG00000023084)	ENSELUG00000023174	gabrb2a (ENSELUG00000023213)	gabra6a (ENSELUG00000023227)	nudcd2 (ENSELUG00000023272)	ccng1 (ENSELUG00000030151)	septin8b (ENSELUG00000023338)	ENSELUG00000023342	gdf9 (ENSELUG00000023686)	hspa4b (ENSELUG00000023803)	gnpda1 (ENSELUG00000023817)	NDFIP1 (ENSELUG00000023844) ##22	fgf1a (ENSELUG00000023891)	kctd16a (ENSELUG00000023920)	ENSELUG00000023896	ENSELUG00000023931	kif3a (ENSELUG00000024021)	ENSELUG00000024034	ENSELUG00000034359	ENSELUG00000024148	ENSELUG00000024214	ENSELUG00000024245	ENSELUG00000024375	nlgn3a (ENSELUG00000024503)	pcdh20 (ENSELUG00000024539)	plp1a (ENSELUG00000024584)	RAB9B (ENSELUG00000004378)
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00390000012721.a.h ##22
Protacanthopterygii	ANCESTRAL SPECIES	44	ENSGT00940000158396	ENSGT00390000015484.j	ENSGT00940000154245.A.kb	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a.h ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254.q.a	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B	ENSGT00390000000483.a.a
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	39	ENSGT00940000156818.`c.a	ENSGT00940000158396.b	ENSGT00940000154245.A.kb.c.b	ENSGT00940000156722.a.d	ENSGT00940000159136.m	ENSGT00940000156685.x	ENSGT00940000162679.h	ENSGT00940000156068.i.b	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656.j	ENSGT00950000182974.a.a.b.n	ENSGT00730000111200.hb	ENSGT00940000156067.g.a.i	ENSGT00940000154507.s.f	ENSGT00530000063825.A.d.d	ENSGT00390000012721.a.h.a ##22	ENSGT00950000183055.b.b.f ##23	ENSGT00940000165035.b	ENSGT00940000157254.q.a	ENSGT00940000156385.b.e	ENSGT00940000153168.C.a.a.c	ENSGT00940000156071.b.a	ENSGT00940000158849	ENSGT00940000160864.b	ENSGT00390000012163.d	ENSGT00510000046929.b.c ##21	ENSGT00940000160880.g	ENSGT00940000155857.f.b.c	ENSGT00940000164716.B.a	ENSGT00390000000483.a.a.d	ENSGT00940000154998.a.a.w
Salmoninae_a	ANCESTRAL SPECIES	44	ENSGT00940000156818.`c.a	ENSGT00940000158396.b	ENSGT00940000154245.A.kb.c.b	ENSGT00940000156722.a.d	ENSGT00940000159136.m	ENSGT00940000156685.x	ENSGT00940000162679.h	ENSGT00940000156068.i.b	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656.j	ENSGT00950000182974.a.a.b.n	ENSGT00730000111200.hb	ENSGT00940000156067.g.a.i	ENSGT00940000154507.s.f	ENSGT00530000063825.A.d.d	ENSGT00390000012721.a.h.a ##22	ENSGT00950000183055.b.b.f ##23	ENSGT00940000165035.b	ENSGT00940000157254.q.a	ENSGT00940000156385.b.e	ENSGT00940000153168.C.a.a.c	ENSGT00940000156071.b.a	ENSGT00940000158849	ENSGT00940000160864.b	ENSGT00390000012163.d	ENSGT00510000046929.b.c ##21	ENSGT00940000160880.g	ENSGT00940000155857.f.b.c	ENSGT00940000164716.B.a	ENSGT00390000000483.a.a.d	ENSGT00940000154998.a.a.w
Salmo	ANCESTRAL SPECIES	17	ENSGT00940000156818.`c.a	ENSGT00940000158396.b	ENSGT00940000154245.A.kb.c.b	ENSGT00940000156722.a.d	ENSGT00940000159136.m	ENSGT00940000156685.x	ENSGT00940000162679.h	ENSGT00940000156068.i.b	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656.j	ENSGT00950000182974.a.a.b.n	ENSGT00940000168656	ENSGT00940000156067.g.a.i	ENSGT00940000154507.s.f	ENSGT00530000063825.A.d.d	ENSGT00390000012721.a.h.a ##22	ENSGT00950000183055.b.b.f ##23	ENSGT00940000165035.b	ENSGT00940000157254.q.a	ENSGT00940000156385.b.e	ENSGT00940000153168.C.a.a.c	ENSGT00940000156071.b.a	ENSGT00940000158849	ENSGT00940000160864.b	ENSGT00390000012163.d	ENSGT00510000046929.b.c ##21	ENSGT00940000160880.g	ENSGT00940000155857.f.b.c	ENSGT00940000164716.B.a	ENSGT00390000000483.a.a.d	ENSGT00940000154998.a.a.w
River trout	MODERN SPECIES	10	SH3PXD2B (ENSSTUG00000010863)	ENSSTUG00000010847	GABRB2 (ENSSTUG00000010837)	GABRA6 (ENSSTUG00000010760)	ENSSTUG00000010757	gabra1 (ENSSTUG00000010742)	GABRG2 (ENSSTUG00000009879)	septin8a (ENSSTUG00000007841)	ENSSTUG00000007778	ENSSTUG00000007766	AFF4 (ENSSTUG00000007739)	ENSSTUG00000007707	HSPA4 (ENSSTUG00000006365)	RNF14 (ENSSTUG00000006292)	endou2 (ENSSTUG00000006268)	NDFIP1 (ENSSTUG00000006185) ##22	ENSSTUG00000006175	spry4 (ENSSTUG00000006170) ##23	fgf1b (ENSSTUG00000006162)	ARHGAP26 (ENSSTUG00000005785)	NR3C1 (ENSSTUG00000005575)	ENSSTUG00000005566	yipf5 (ENSSTUG00000005552)	kctd16b (ENSSTUG00000005544)	ENSSTUG00000005499	ENSSTUG00000005471	RBM27 (ENSSTUG00000005420) ##21	pou4f3 (ENSSTUG00000005405)	drd1b (ENSSTUG00000005395)	ENSSTUG00000005387	msx2b (ENSSTUG00000005380)
Atlantic salmon	MODERN SPECIES	23	GABRB2 (ENSSSAG00000045443)	GABRA6 (ENSSSAG00000075791)	gabra1 (ENSSSAG00000075796)	GABRG2 (ENSSSAG00000075824)	ENSSSAG00000076407	sept8 (ENSSSAG00000076438)	SOWAHA (ENSSSAG00000077842)	ENSSSAG00000077845	ENSSSAG00000077858	ZCH10 (ENSSSAG00000077977)	ENSSSAG00000103528	ENSSSAG00000078016	ENSSSAG00000078223	RNF14 (ENSSSAG00000078228)	ENSSSAG00000078231	NDFIP1 (ENSSSAG00000078235) ##22	SPRY4 (ENSSSAG00000104116) ##23	ENSSSAG00000110087	FGF1 (ENSSSAG00000078271)	ARHGAP26 (ENSSSAG00000078318)	NR3C1 (ENSSSAG00000078999)	ENSSSAG00000112728	yipf5 (ENSSSAG00000097439)	KCTD16 (ENSSSAG00000079018)	GRXCR2 (ENSSSAG00000102850)	PLAC8L1 (ENSSSAG00000079022)	ENSSSAG00000114419	ENSSSAG00000079034	RBM27 (ENSSSAG00000079044) ##21	pou4f3 (ENSSSAG00000079060)	DRD1 (ENSSSAG00000079063)
Oncorhynchus	ANCESTRAL SPECIES	41	ENSGT00940000156818.`c.a	ENSGT00940000158396.b	ENSGT00940000154245.A.kb.c.b	ENSGT00940000156722.a.d	ENSGT00940000159136.m	ENSGT00940000156685.x	ENSGT00940000162679.h	ENSGT00940000156068.i.b	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656.j	ENSGT00950000182974.a.a.b.n	ENSGT00730000111200.hb	ENSGT00940000156067.g.a.i	ENSGT00940000154507.s.f	ENSGT00530000063825.A.d.d	ENSGT00390000012721.a.h.a ##22	ENSGT00950000183055.b.b.f ##23	ENSGT00940000165035.b	ENSGT00940000157254.q.a	ENSGT00940000156385.b.e	ENSGT00940000153168.C.a.a.c	ENSGT00940000156071.b.a	ENSGT00940000158849	ENSGT00940000160864.b	ENSGT00390000012163.d	ENSGT00510000046929.b.c ##21	ENSGT00940000160880.g	ENSGT00940000155857.f.b.c	ENSGT00940000164716.B.a	ENSGT00390000000483.a.a.d	ENSGT00940000154998.a.a.w
Rainbow trout	MODERN SPECIES	1	GABRA6 (ENSOMYG00000064866)	gabra1 (ENSOMYG00000055306)	ENSOMYG00000058530	GABRG2 (ENSOMYG00000032827)	ENSOMYG00000066971	ENSOMYG00000032699	septin8a (ENSOMYG00000032597)	SOWAHA (ENSOMYG00000032535)	ENSOMYG00000032528	ENSOMYG00000032527	AFF4 (ENSOMYG00000032517)	zcchc10 (ENSOMYG00000032505)	hspa4a (ENSOMYG00000032117)	RNF14 (ENSOMYG00000031947)	ENSOMYG00000067761	nfip1 (ENSOMYG00000031901) ##22	SPRY4 (ENSOMYG00000031862) ##23	ENSOMYG00000061901	ENSOMYG00000060773	ENSOMYG00000031854	ARHGAP26 (ENSOMYG00000031827)	NR3C1 (ENSOMYG00000031572)	yipf5 (ENSOMYG00000031487)	kctd16b (ENSOMYG00000031471)	GRXCR2 (ENSOMYG00000031465)	PLAC8L1 (ENSOMYG00000031448)	ENSOMYG00000072343	ENSOMYG00000031427	RBM27 (ENSOMYG00000031407) ##21	POU4F3 (ENSOMYG00000031397)	drd1b (ENSOMYG00000031391)
Oncorhynchus_a	ANCESTRAL SPECIES	43	ENSGT00940000156818.`c.a	ENSGT00940000158396.b	ENSGT00940000154245.A.kb.c.b	ENSGT00940000156722.a.d	ENSGT00940000159136.m	ENSGT00940000156685.x	ENSGT00940000162679.h	ENSGT00940000156068.i.b	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656.j	ENSGT00950000182974.a.a.b.n	ENSGT00730000111200.hb	ENSGT00940000156067.g.a.i	ENSGT00940000154507.s.f	ENSGT00530000063825.A.d.d	ENSGT00390000012721.a.h.a ##22	ENSGT00950000183055.b.b.f ##23	ENSGT00940000165035.b	ENSGT00940000157254.q.a	ENSGT00940000156385.b.e	ENSGT00940000153168.C.a.a.c	ENSGT00940000156071.b.a	ENSGT00940000158849	ENSGT00940000160864.b	ENSGT01000000221046	ENSGT00510000046929.b.c ##21	ENSGT00940000160880.g	ENSGT00940000155857.f.b.c	ENSGT00940000164716.B.a	ENSGT00390000000483.a.a.d	ENSGT00940000154998.a.a.w
Chinook salmon	MODERN SPECIES	23	SH3PXD2B (ENSOTSG00005007427)	ENSOTSG00005007422	GABRB2 (ENSOTSG00005007421)	GABRA6 (ENSOTSG00005007420)	gabra1 (ENSOTSG00005007419)	GABRG2 (ENSOTSG00005007418)	ENSOTSG00005007417	septin8a (ENSOTSG00005005081)	SOWAHA (ENSOTSG00005005073)	ENSOTSG00005005072	AFF4 (ENSOTSG00005005070)	zcchc10 (ENSOTSG00005005069)	hspa4a (ENSOTSG00005004283)	ENSOTSG00005004266	endou2 (ENSOTSG00005004263)	NDFIP1 (ENSOTSG00005004020) ##22	adrb2b (ENSOTSG00005004018)	ubtd2 (ENSOTSG00005004017)	ENSOTSG00005004014	UBLCP1 (ENSOTSG00005004012)	RNF145 (ENSOTSG00005003879)	ENSOTSG00005003874	spry4 (ENSOTSG00005003872) ##23	fgf1b (ENSOTSG00005003871)	ARHGAP26 (ENSOTSG00005003868)	NR3C1 (ENSOTSG00005003629)	yipf5 (ENSOTSG00005003618)	kctd16b (ENSOTSG00005003616)	GRXCR2 (ENSOTSG00005003615)	ENSOTSG00005003614	ENSOTSG00005003611
Coho salmon	MODERN SPECIES	20	ENSOKIG00005030254	ENSOKIG00005030263	GABRB2 (ENSOKIG00005030290)	GABRA6 (ENSOKIG00005030442)	gabra1 (ENSOKIG00005030557)	GABRG2 (ENSOKIG00005030767)	ENSOKIG00005031483	septin8a (ENSOKIG00005031588)	SOWAHA (ENSOKIG00005033706)	ENSOKIG00005033714	AFF4 (ENSOKIG00005033733)	zcchc10 (ENSOKIG00005033746)	hspa4a (ENSOKIG00005033802)	RNF14 (ENSOKIG00005034727)	ENSOKIG00005034740	NDFIP1 (ENSOKIG00005034762) ##22	SPRY4 (ENSOKIG00005034819) ##23	ENSOKIG00005034841	fgf1b (ENSOKIG00005034848)	ARHGAP26 (ENSOKIG00005034922)	NR3C1 (ENSOKIG00005035497)	yipf5 (ENSOKIG00005035792)	kctd16b (ENSOKIG00005035812)	ENSOKIG00005035824	GRXCR2 (ENSOKIG00005035833)	ENSOKIG00005035843	ENSOKIG00005035864	RBM27 (ENSOKIG00005035894) ##21	POU4F3 (ENSOKIG00005035942)	drd1b (ENSOKIG00005035960)	msx2b (ENSOKIG00005035967)
Huchen	MODERN SPECIES	1349								septin8a (ENSHHUG00000027959)	ENSHHUG00000029223	ENSHHUG00000029225	AFF4 (ENSHHUG00000029228)	zcchc10 (ENSHHUG00000029236)	hspa4a (ENSHHUG00000029245)	ENSHHUG00000029558	endou2 (ENSHHUG00000029565)	NDFIP1 (ENSHHUG00000029594) ##22
Salmoninae	ANCESTRAL SPECIES	210	ENSGT00940000156818.`c.b	ENSGT00940000158396.a	ENSGT00390000015484.j	ENSGT00940000154245.A.kb.c.a	ENSGT00940000156722.a.c	ENSGT00940000159136.n	ENSGT00940000156685.w	ENSGT00940000162679.g	ENSGT00940000156068.i.a	ENSGT00940000160656.i	ENSGT00950000182974.a.a.b.m	ENSGT00730000111200.ib	ENSGT00940000156067.g.a.j	ENSGT00940000154507.s.e	ENSGT00530000063825.A.d.c	ENSGT00390000012721.a.h.b ##22	ENSGT00950000183055.b.b.e ##23	ENSGT00940000157254.q.b.a.a	ENSGT00940000156385.b.f	ENSGT00940000153168.C.a.a.d	ENSGT00940000156071.b.b	ENSGT00940000160864.a	ENSGT00390000012163.c	ENSGT00510000046929.b.d ##21	ENSGT00940000160880.h	ENSGT00970000197177	ENSGT00390000018781	ENSGT00940000155857.f.b.d	ENSGT00940000164716.B.b	ENSGT00390000000483.a.a.c	ENSGT00940000154998.a.a.x
Salmoninae_a	ANCESTRAL SPECIES	4	ENSGT00940000156818.`c.b	ENSGT00940000158396.a	ENSGT00390000015484.j	ENSGT00940000154245.A.kb.c.a	ENSGT00940000156722.a.c	ENSGT00940000159136.n	ENSGT00940000156685.w	ENSGT00940000162679.g	ENSGT00940000156068.i.a	ENSGT00940000160656.i	ENSGT00950000182974.a.a.b.m	ENSGT00730000111200.ib	ENSGT00940000156067.g.a.j	ENSGT00940000154507.s.e	ENSGT00530000063825.A.d.c	ENSGT00390000012721.a.h.b ##22	ENSGT00950000183055.b.b.e ##23	ENSGT00940000157254.q.b.a.a	ENSGT00940000156385.b.f	ENSGT00940000153168.C.a.a.d	ENSGT00940000156071.b.b	ENSGT00940000160864.a	ENSGT00390000012163.c	ENSGT00510000046929.b.d ##21	ENSGT00940000160880.h	ENSGT00970000197177	ENSGT00390000018781	ENSGT00940000155857.f.b.d	ENSGT00940000164716.B.b	ENSGT00390000000483.a.a.c	ENSGT00940000154998.a.a.x
Salmo	ANCESTRAL SPECIES	44	ENSGT00940000156818.`c.b	ENSGT00940000158396.a	ENSGT00390000015484.j	ENSGT00940000154245.A.kb.c.a	ENSGT00940000156722.a.c	ENSGT00940000159136.n	ENSGT00940000156685.w	ENSGT00940000162679.g	ENSGT00940000156068.i.a	ENSGT00940000160656.i	ENSGT00950000182974.a.a.b.m	ENSGT00730000111200.ib	ENSGT00940000156067.g.a.j	ENSGT00940000154507.s.e	ENSGT00530000063825.A.d.c	ENSGT00390000012721.a.h.b ##22	ENSGT00950000183055.b.b.e ##23	ENSGT00940000157254.q.b.b	ENSGT00940000156385.b.f	ENSGT00940000153168.C.a.a.d	ENSGT00940000156071.b.b	ENSGT00940000160864.a	ENSGT00390000012163.c	ENSGT00510000046929.b.d ##21	ENSGT00940000160880.h	ENSGT00970000197177	ENSGT00390000018781	ENSGT00940000155857.f.b.d	ENSGT00940000164716.B.b	ENSGT00390000000483.a.a.c	ENSGT00940000154998.a.a.x
Atlantic salmon	MODERN SPECIES	4	ENSSSAG00000118717	ENSSSAG00000047247	ENSSSAG00000108982	GABRB2 (ENSSSAG00000099903)	GABRA6 (ENSSSAG00000045177)	gabra1 (ENSSSAG00000043760)	GABRG2 (ENSSSAG00000039181)	CCNI (ENSSSAG00000078101)	septin8a (ENSSSAG00000078028)	ENSSSAG00000078010	AFF4 (ENSSSAG00000077948)	zcchc10 (ENSSSAG00000077928)	hspa4a (ENSSSAG00000077661)	rnf14 (ENSSSAG00000077630)	ENSSSAG00000077615	NDFIP1 (ENSSSAG00000077522) ##22	SPRY4 (ENSSSAG00000111017) ##23	ARHGAP26 (ENSSSAG00000076080)	NR3C1 (ENSSSAG00000075853)	YIPF5 (ENSSSAG00000075844)	kctd16b (ENSSSAG00000086244)	PLAC8L1 (ENSSSAG00000075842)	lars1b (ENSSSAG00000075198)	RBM27 (ENSSSAG00000075133) ##21	pou4f3 (ENSSSAG00000075124)	ENSSSAG00000074157	ENSSSAG00000082153	drd1b (ENSSSAG00000074115)	ENSSSAG00000121958	msx2b (ENSSSAG00000074113)	nsg2 (ENSSSAG00000108039)
River trout	MODERN SPECIES	6	SH3PXD2B (ENSSTUG00000021335)	ENSSTUG00000021328	GABRB2 (ENSSTUG00000021257)	GABRA6 (ENSSTUG00000021207)	gabra1 (ENSSTUG00000020885)	GABRG2 (ENSSTUG00000019385)	ENSSTUG00000019333	CCNI2 (ENSSTUG00000019315)	septin8a (ENSSTUG00000019060)	ENSSTUG00000019041	AFF4 (ENSSTUG00000019017)	zcchc10 (ENSSTUG00000018996)	hspa4a (ENSSTUG00000017578)	RNF14 (ENSSTUG00000017541)	endou2 (ENSSTUG00000017532)	ndfip1l (ENSSTUG00000017209) ##22	spry4 (ENSSTUG00000017194) ##23	ENSSTUG00000017188	ARHGAP26 (ENSSTUG00000016690)	NR3C1 (ENSSTUG00000016475)	yipf5 (ENSSTUG00000016457)	kctd16b (ENSSTUG00000016456)	PLAC8L1 (ENSSTUG00000016447)	LARS1 (ENSSTUG00000013704)	RBM27 (ENSSTUG00000013599) ##21	pou4f3 (ENSSTUG00000013587)	ENSSTUG00000013572	RAD50 (ENSSTUG00000012660)	drd1b (ENSSTUG00000012628)	msx2b (ENSSTUG00000012621)	nsg2 (ENSSTUG00000012611)
Oncorhynchus	ANCESTRAL SPECIES	4	ENSGT00940000157177.b	ENSGT00940000156580.c	ENSGT00550000074618.a.a.mb.a	ENSGT00940000154245.A.kb.c.a	ENSGT00940000156722.a.c	ENSGT00940000159136.n	ENSGT00940000156685.w	ENSGT00940000162679.g	ENSGT00940000156068.i.a	ENSGT00940000160656.i	ENSGT00950000182974.a.a.b.m	ENSGT00730000111200.ib	ENSGT00940000156067.g.a.j	ENSGT00940000154507.s.e	ENSGT00530000063825.A.d.c	ENSGT00390000012721.a.h.b ##22	ENSGT00950000183055.b.b.e ##23	ENSGT00940000157254.q.b.a.a	ENSGT00940000156385.b.f	ENSGT00940000153168.C.a.a.d	ENSGT00940000156071.b.b	ENSGT00940000160864.a	ENSGT00390000012163.c	ENSGT00510000046929.b.d ##21	ENSGT00940000160880.h	ENSGT00970000197177	ENSGT00390000018781	ENSGT00940000155857.f.b.d	ENSGT00940000164716.B.b	ENSGT00390000000483.a.a.c	ENSGT00940000154998.a.a.x
Rainbow trout	MODERN SPECIES	3	ENSOMYG00000005687	ENSOMYG00000055610	GABRB2 (ENSOMYG00000005792)	GABRA6 (ENSOMYG00000005834)	gabra1 (ENSOMYG00000005915)	GABRG2 (ENSOMYG00000006235)	CCNI2 (ENSOMYG00000006476)	septin8a (ENSOMYG00000007284)	ENSOMYG00000067676	ENSOMYG00000007978	AFF4 (ENSOMYG00000008023)	zcchc10 (ENSOMYG00000008055)	hspa4a (ENSOMYG00000008837)	RNF14 (ENSOMYG00000010153)	ENSOMYG00000010160	NDFIP1 (ENSOMYG00000010267) ##22	ENSOMYG00000069020	SPRY4 (ENSOMYG00000010326) ##23	ARHGAP26 (ENSOMYG00000010811)	ENSOMYG00000065121	NR3C1 (ENSOMYG00000014588)	ENSOMYG00000060259	yipf5 (ENSOMYG00000014818)	kctd16b (ENSOMYG00000014832)	ENSOMYG00000067417	PLAC8L1 (ENSOMYG00000014844)	LARS1 (ENSOMYG00000015011)	RBM27 (ENSOMYG00000015678) ##21	pou4f3 (ENSOMYG00000015719)	ENSOMYG00000015782	drd1b (ENSOMYG00000015927)
Oncorhynchus_a	ANCESTRAL SPECIES	2	ENSGT00940000156818.`c.b	ENSGT00940000158396.a	ENSGT00940000182424	ENSGT00940000154245.A.kb.c.a	ENSGT00940000156722.a.c	ENSGT00940000159136.n	ENSGT00940000156685.w	ENSGT00940000162679.g	ENSGT00940000156068.i.a	ENSGT00940000160656.i	ENSGT00950000182974.a.a.b.m	ENSGT00730000111200.ib	ENSGT00940000156067.g.a.j	ENSGT00940000154507.s.e	ENSGT00530000063825.A.d.c	ENSGT00390000012721.a.h.b ##22	ENSGT00950000183055.b.b.e ##23	ENSGT00940000157254.q.b.a.a	ENSGT00940000156385.b.f	ENSGT00940000153168.C.a.a.d	ENSGT00940000156071.b.b	ENSGT00940000160864.a	ENSGT00390000012163.c	ENSGT00510000046929.b.d ##21	ENSGT00940000160880.h	ENSGT00970000197177	ENSGT00390000018781	ENSGT00940000155857.f.b.d	ENSGT00940000164716.B.b	ENSGT00390000000483.a.a.c	ENSGT00940000154998.a.a.x
Coho salmon	MODERN SPECIES	26	ENSOKIG00005049271	GABRB2 (ENSOKIG00005049276)	GABRA6 (ENSOKIG00005049293)	gabra1 (ENSOKIG00005049341)	GABRG2 (ENSOKIG00005049503)	ENSOKIG00005049629	CCNI2 (ENSOKIG00005049631)	septin8a (ENSOKIG00005049697)	ENSOKIG00005049890	AFF4 (ENSOKIG00005049901)	zcchc10 (ENSOKIG00005049916)	hspa4a (ENSOKIG00005049927)	RNF14 (ENSOKIG00005049985)	RNF14 (ENSOKIG00005049987)	endou2 (ENSOKIG00005049988)	ndfip1l (ENSOKIG00005049998) ##22	spry4 (ENSOKIG00005050005) ##23	ENSOKIG00005050007	ARHGAP26 (ENSOKIG00005050019)	NR3C1 (ENSOKIG00005050038)	yipf5 (ENSOKIG00005050061)	kctd16b (ENSOKIG00005050063)	ENSOKIG00005050067	ENSOKIG00005050070	PLAC8L1 (ENSOKIG00005050072)	LARS1 (ENSOKIG00005050108)	RBM27 (ENSOKIG00005050189) ##21	pou4f3 (ENSOKIG00005050198)	ENSOKIG00005050203	RAD50 (ENSOKIG00005050222)	drd1b (ENSOKIG00005050262)
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	33	stk10 (ENSOTSG00005047197)	SH3PXD2B (ENSOTSG00005030556)	ENSOTSG00005030558	GABRB2 (ENSOTSG00005030568)	GABRA6 (ENSOTSG00005030576)	gabra1 (ENSOTSG00005030588)	GABRG2 (ENSOTSG00005031572)	CCNI2 (ENSOTSG00005031822)	septin8a (ENSOTSG00005031827)	ENSOTSG00005032055	AFF4 (ENSOTSG00005032056)	ENSOTSG00005032057	HSPA4 (ENSOTSG00005032063)	RNF14 (ENSOTSG00005033319)	endou2 (ENSOTSG00005033323)	ndfip1l (ENSOTSG00005033327) ##22	ENSOTSG00005033347	spry4 (ENSOTSG00005033350) ##23	ENSOTSG00005033351	ARHGAP26 (ENSOTSG00005033353)	NR3C1 (ENSOTSG00005033628)	yipf5 (ENSOTSG00005034126)	kctd16b (ENSOTSG00005034129)	ENSOTSG00005034131	LARS1 (ENSOTSG00005034165)	RBM27 (ENSOTSG00005035553) ##21	pou4f3 (ENSOTSG00005035554)	ENSOTSG00005035555	RAD50 (ENSOTSG00005035558)	drd1b (ENSOTSG00005035978)	msx2b (ENSOTSG00005035979)
Chinook salmon	MODERN SPECIES	33	stk10 (ENSOTSG00005047263)	SH3PXD2B (ENSOTSG00005047264)	ENSOTSG00005047265	GABRB2 (ENSOTSG00005047266)	GABRA6 (ENSOTSG00005047267)	gabra1 (ENSOTSG00005047274)	GABRG2 (ENSOTSG00005047325)	CCNI2 (ENSOTSG00005047395)	septin8a (ENSOTSG00005047396)	ENSOTSG00005047412	AFF4 (ENSOTSG00005047414)	ENSOTSG00005047415	HSPA4 (ENSOTSG00005047416)	RNF14 (ENSOTSG00005047434)	endou2 (ENSOTSG00005047435)	ndfip1l (ENSOTSG00005047437) ##22	spry4 (ENSOTSG00005047441) ##23	ARHGAP26 (ENSOTSG00005047450)	NR3C1 (ENSOTSG00005047485)	yipf5 (ENSOTSG00005047500)	kctd16b (ENSOTSG00005047501)	ENSOTSG00005047502	LARS1 (ENSOTSG00005047509)	RBM27 (ENSOTSG00005047543) ##21	pou4f3 (ENSOTSG00005047546)	ENSOTSG00005047548	RAD50 (ENSOTSG00005047559)	drd1b (ENSOTSG00005047581)	msx2b (ENSOTSG00005047582)	xpc (ENSOTSG00005047583)	si:dkey-72l14.3 (ENSOTSG00005047584)
Huchen	MODERN SPECIES	82	stk10 (ENSHHUG00000026610)	SH3PXD2B (ENSHHUG00000026682)	ENSHHUG00000026709	GABRB2 (ENSHHUG00000026719)	GABRA6 (ENSHHUG00000026724)	gabra1 (ENSHHUG00000026758)	GABRG2 (ENSHHUG00000026936)	CCNI2 (ENSHHUG00000027319)	septin8a (ENSHHUG00000027329)	ENSHHUG00000027600	AFF4 (ENSHHUG00000027608)	zcchc10 (ENSHHUG00000027629)	hspa4a (ENSHHUG00000027635)	RNF14 (ENSHHUG00000027912)	endou2 (ENSHHUG00000027922)	ndfip1l (ENSHHUG00000027971) ##22	spry4 (ENSHHUG00000027983) ##23	ENSHHUG00000028011	ENSHHUG00000028034
Northern pike	MODERN SPECIES	6	GABRB2 (ENSELUG00000001023)	GABRA6 (ENSELUG00000024139)	gabra1 (ENSELUG00000024116)	GABRG2 (ENSELUG00000024074)	CCNI2 (ENSELUG00000024000)	septin8a (ENSELUG00000023981)	SOWAHA (ENSELUG00000023939)	ENSELUG00000023915	ENSELUG00000028348	ENSELUG00000024882	AFF4 (ENSELUG00000023871)	zcchc10 (ENSELUG00000023728)	hspa4a (ENSELUG00000023695)	rnf14 (ENSELUG00000023620)	endou2 (ENSELUG00000023584)	ndfip1l (ENSELUG00000033033) ##22	spry4 (ENSELUG00000023554) ##23	fgf1b (ENSELUG00000023539)	ARHGAP26 (ENSELUG00000029002)	ARHGAP26 (ENSELUG00000023519)	NR3C1 (ENSELUG00000023409)	yipf5 (ENSELUG00000023350)	ENSELUG00000027181	kctd16b (ENSELUG00000023335)	GRXCR2 (ENSELUG00000000989)	PLAC8L1 (ENSELUG00000023177)	LARS1 (ENSELUG00000023311)	RBM27 (ENSELUG00000023148) ##21	pou4f3 (ENSELUG00000023118)	ENSELUG00000000982	ENSELUG00000031816
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00390000012721.a.h ##22
Cod	MODERN SPECIES	20	gabra1 (ENSGMOG00000035169)	GABRG2 (ENSGMOG00000019333)	ENSGMOG00000032819	ENSGMOG00000026522	ENSGMOG00000025175	CCNI2 (ENSGMOG00000008873)	septin8a (ENSGMOG00000008857)	SOWAHA (ENSGMOG00000033658)	ENSGMOG00000034457	AFF4 (ENSGMOG00000029944)	zcchc10 (ENSGMOG00000035001)	hspa4a (ENSGMOG00000008775)	ENSGMOG00000008763	ENSGMOG00000024562	ENSGMOG00000008756	NDFIP1 (ENSGMOG00000036711) ##22	ENSGMOG00000031561	ENSGMOG00000014435	ARHGAP26 (ENSGMOG00000011388)	NR3C1 (ENSGMOG00000017783)	YIPF5 (ENSGMOG00000004008)	ENSGMOG00000003930	ENSGMOG00000003896	ENSGMOG00000009643	ENSGMOG00000009654	ENSGMOG00000036113	ENSGMOG00000009685	ENSGMOG00000009714	ENSGMOG00000027793	ENSGMOG00000023269	myl10 (ENSGMOG00000001561)
Otomorpha	ANCESTRAL SPECIES	16	ENSGT00940000158396	ENSGT00390000015484.j	ENSGT00940000154245.A.kb	ENSGT00940000156722.a	ENSGT00940000159136	ENSGT00940000156685	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B	ENSGT00390000000483.a.a
Clupeiformes	ANCESTRAL SPECIES	137			ENSGT00940000159751.y	ENSGT00940000161811.a	ENSGT00940000161542	ENSGT00940000159751.x.b	ENSGT00940000155578.f	ENSGT00940000161716.kc.b	ENSGT00390000002172.A.a.e	ENSGT00390000013836	ENSGT00940000155974	ENSGT00940000153253.b.a	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00940000154049.a	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B
Denticle herring	MODERN SPECIES	16	ENSDCDG00000034112	coa4 (ENSDCDG00000034113)	kctd7 (ENSDCDG00000034115)	ENSDCDG00000034116	CUX1 (ENSDCDG00000034118)	myl10 (ENSDCDG00000034119)	ENSDCDG00000034121	bcl7ba (ENSDCDG00000034122)	tbl2 (ENSDCDG00000034123)	nsun5 (ENSDCDG00000034124)	ENSDCDG00000034127	hspa4a (ENSDCDG00000034139)	ENSDCDG00000034305	rnf14 (ENSDCDG00000034306)	endou2 (ENSDCDG00000034309)	ndfip1l (ENSDCDG00000034317) ##22	spry4 (ENSDCDG00000034332) ##23	fgf1b (ENSDCDG00000034334)	ARHGAP26 (ENSDCDG00000034407)	NR3C1 (ENSDCDG00000034853)	yipf5 (ENSDCDG00000034855)	kctd16b (ENSDCDG00000034856)	GRXCR2 (ENSDCDG00000034858)	PLAC8L1 (ENSDCDG00000034860)	LARS1 (ENSDCDG00000034864)	nsrp1 (ENSDCDG00000034959)	RBM27 (ENSDCDG00000034963) ##21	pou4f3 (ENSDCDG00000034965)	RAD50 (ENSDCDG00000034984)	drd1b (ENSDCDG00000035021)	msx2b (ENSDCDG00000035023)
Atlantic herring	MODERN SPECIES	24	ENSCHAG00000013307	ENSCHAG00000013286	ENSCHAG00000013277	or80a5 (ENSCHAG00000013266)	ENSCHAG00000013256	ENSCHAG00000013236	ENSCHAG00000013128	ENSCHAG00000013108	bcl7ba (ENSCHAG00000013098)	tbl2 (ENSCHAG00000013045)	nsun5 (ENSCHAG00000012931)	ENSCHAG00000012924	hspa4a (ENSCHAG00000011973)	rnf14 (ENSCHAG00000011948)	endou2 (ENSCHAG00000011911)	ndfip1l (ENSCHAG00000011787) ##22	spry4 (ENSCHAG00000011777) ##23	ENSCHAG00000011768	ARHGAP26 (ENSCHAG00000006304)	NR3C1 (ENSCHAG00000006120)	yipf5 (ENSCHAG00000006102)	kctd16b (ENSCHAG00000006089)	ENSCHAG00000006081	GRXCR2 (ENSCHAG00000006064)	PLAC8L1 (ENSCHAG00000006032)	LARS1 (ENSCHAG00000004966)	nsrp1 (ENSCHAG00000004910)	RBM27 (ENSCHAG00000004835) ##21	pou4f3 (ENSCHAG00000004811)	ENSCHAG00000004800	RAD50 (ENSCHAG00000003034)
Otophysi	ANCESTRAL SPECIES	137	ENSGT00940000160883.a	ENSGT00530000063000.a.b.a	ENSGT00940000158388.a.a	ENSGT00940000157904.b	ENSGT00940000158972	ENSGT00390000001134.b.`b.b	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00390000018781	ENSGT00940000155857.f.b	ENSGT00940000164716.B	ENSGT00390000000483.a.a
Cyprinoidei	ANCESTRAL SPECIES	9	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000017869	ENSGT00940000160376	ENSGT00510000047420	ENSGT00940000160491.d.b.a	ENSGT00940000165596.d	ENSGT00940000160491.d.b.b	ENSGT00940000154894.a	ENSGT00390000006788.a.a	ENSGT00940000155470.a	ENSGT00440000037505.b	ENSGT00550000075136	ENSGT00940000156067.g.b	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00940000165035.a	ENSGT00940000156385.a	ENSGT00940000156071.a	ENSGT00940000155875	ENSGT00940000156386	ENSGT00990000209953	ENSGT00940000157037.a.d	ENSGT00940000164716.A	ENSGT00940000154998.a.b.k	ENSGT00390000005989.a.b.b	ENSGT00940000158996	ENSGT00390000014412.l	ENSGT00940000162301	ENSGT00940000155070.a.b.a	ENSGT00940000153147.a.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES																	ENSGT00390000012721.a.i ##22
Cyprininae_a	ANCESTRAL SPECIES	1086																ENSGT00390000012721.a.i ##22	ENSGT00940000165035.a
Golden-line barbel	MODERN SPECIES	509						kctd16a (ENSSGRG00000047733)	nr3c1 (ENSSGRG00000047732)	ENSSGRG00000047731	SLC4A11 (ENSSGRG00000047730)	ENSSGRG00000047728	ENOX2 (ENSSGRG00000047727)	ENSSGRG00000047576	med12 (ENSSGRG00000046263)	hspa4b (ENSSGRG00000044427)	gnpda1 (ENSSGRG00000044337)	ndfip1 (ENSSGRG00000044336) ##22	fgf1a (ENSSGRG00000044335)	ENSSGRG00000044329	nudt22 (ENSSGRG00000044326)	gdf9 (ENSSGRG00000044322)	ENSSGRG00000044319	atp7a (ENSSGRG00000043921)	ENSSGRG00000043919	ENSSGRG00000043918	ENSSGRG00000043917	gabrb2a (ENSSGRG00000043845)	gabra6a (ENSSGRG00000043844)	ccng1 (ENSSGRG00000043843)	gatad1 (ENSSGRG00000043834)	si:dkey-6i22.5 (ENSSGRG00000043833)	ENSSGRG00000043832
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	309															ENSGT00940000158744.a	ENSGT00390000012721.a.j.a.a ##22	ENSGT00950000183055.b.b.d ##23	ENSGT01060000253365	ENSGT00940000157254.t	ENSGT00940000156385.b.d	ENSGT00940000153168.C.a.a.a	ENSGT00940000156071.b.d	ENSGT00940000158849.a.a	ENSGT00940000160864.d	ENSGT00390000012163.e.a	ENSGT00510000046929.b.f ##21	ENSGT00940000160880.e	ENSGT00990000209912.a	ENSGT00390000018781.z.a.a	ENSGT00940000155857.f.b.f	ENSGT00940000164716.B.d
Cyprininae_a	ANCESTRAL SPECIES	83	ENSGT00530000063582.a.c.b	ENSGT00510000047092.t	ENSGT00940000159536.h.b	ENSGT00940000155150.b.b.f	ENSGT00940000164078.a.b.a.a	ENSGT00940000166125	ENSGT00390000006178	ENSGT00940000165351.i.b	ENSGT00390000010397.a.c.b	ENSGT00390000007430.h	ENSGT00390000000360.b	ENSGT00940000159444.f	ENSGT00940000164188.g.b	ENSGT01060000248589.C.h.a	ENSGT00940000158744.a	ENSGT00390000012721.a.j.a.a ##22	ENSGT00950000183055.b.b.d ##23	ENSGT01060000253365	ENSGT00940000157254.t	ENSGT00940000156385.b.d	ENSGT00940000153168.C.a.a.a	ENSGT00940000156071.b.d	ENSGT00940000158849.a.a	ENSGT00940000160864.d	ENSGT00390000012163.e.a	ENSGT00510000046929.b.f ##21	ENSGT00940000160880.e	ENSGT00990000209912.a	ENSGT00390000018781.z.a.a	ENSGT00940000155857.f.b.f	ENSGT00940000164716.B.d
Common carp reference	MODERN SPECIES	38	camk2a (ENSCCRG00000012157)	cdx1b (ENSCCRG00000064218)	ENSCCRG00000081495	ENSCCRG00000028626	ammecr1 (ENSCCRG00000028611)	ENSCCRG00000028623	fundc2 (ENSCCRG00000011328)	ENSCCRG00000011266	ENSCCRG00000056521	ENSCCRG00000078631	ENSCCRG00000011248	ENSCCRG00000024195	ENSCCRG00000059642	ENSCCRG00000038473	mpp1 (ENSCCRG00000060493)	ndfip1l (ENSCCRG00000049510) ##22	SPRY4 (ENSCCRG00000073298) ##23	ENSCCRG00000049610	ARHGAP26 (ENSCCRG00000035429)	NR3C1 (ENSCCRG00000030575)	yipf5 (ENSCCRG00000030517)	kctd16b (ENSCCRG00000078364)	GRXCR2 (ENSCCRG00000030652)	PLAC8L1 (ENSCCRG00000062421)	LARS1 (ENSCCRG00000040615)	RBM27 (ENSCCRG00000040551) ##21	pou4f3 (ENSCCRG00000033292)	ENSCCRG00000046555	drd1b (ENSCCRG00000075305)	ENSCCRG00000024470	msx2b (ENSCCRG00000061968)
Golden-line barbel	MODERN SPECIES	90														ENSSGRG00000000478	mpp1 (ENSSGRG00000000477)	ndfip1l (ENSSGRG00000000438) ##22	spry4 (ENSSGRG00000000430) ##23	fgf1b (ENSSGRG00000000429)	ARHGAP26 (ENSSGRG00000000427)	NR3C1 (ENSSGRG00000000143)	yipf5 (ENSSGRG00000000087)	kctd16b (ENSSGRG00000000084)	GRXCR2 (ENSSGRG00000054476)	PLAC8L1 (ENSSGRG00000054475)	LARS1 (ENSSGRG00000054471)	RBM27 (ENSSGRG00000054466) ##21	pou4f3 (ENSSGRG00000054464)	il13 (ENSSGRG00000054463)	ENSSGRG00000054462	RAD50 (ENSSGRG00000054417)	drd1b (ENSSGRG00000054410)
Goldfish	MODERN SPECIES	40	tcf25 (ENSCARG00000023664)	ENSCARG00000023830	ENSCARG00000023836	camk2a (ENSCARG00000023912)	cdx1b (ENSCARG00000023982)	ENSCARG00000023993	ndufa2 (ENSCARG00000024001)	ENSCARG00000024011	ammecr1 (ENSCARG00000024019)	TMEM164 (ENSCARG00000024037)	ENSCARG00000024059	cmc4 (ENSCARG00000024099)	GABRA3 (ENSCARG00000024107)	ENSCARG00000024125	ENSCARG00000024134	ndfip1l (ENSCARG00000024145) ##22	spry4 (ENSCARG00000024176) ##23	ENSCARG00000024180	ARHGAP26 (ENSCARG00000024421)	ENSCARG00000034056	NR3C1 (ENSCARG00000034140)	ENSCARG00000034841	yipf5 (ENSCARG00000034849)	kctd16b (ENSCARG00000034867)	GRXCR2 (ENSCARG00000034875)	PLAC8L1 (ENSCARG00000034885)	LARS1 (ENSCARG00000034948)	RBM27 (ENSCARG00000035200) ##21	pou4f3 (ENSCARG00000035276)	il13 (ENSCARG00000035284)	RAD50 (ENSCARG00000035313)
Cyprininae	ANCESTRAL SPECIES	328	ENSGT00940000166125	ENSGT00390000006178	ENSGT00940000165351.i.b	ENSGT00390000010397.a.c.b	ENSGT00390000007430	ENSGT00940000154783	ENSGT00390000000360.b	ENSGT00940000159444.f	ENSGT00940000164188.g.a	ENSGT00960000187909	ENSGT00390000000360.a	ENSGT00940000159444.e	ENSGT00940000164188.h	ENSGT01060000248589.C.h	ENSGT00940000158744.b	ENSGT00390000012721.a.j.a.b ##22	ENSGT00950000183055.b.b.c ##23	ENSGT00940000165035.b	ENSGT00940000157254.s	ENSGT00940000156385.b.c	ENSGT00940000153168.C.a.a.b	ENSGT00940000156071.b.c	ENSGT00940000158849.a.b	ENSGT00940000160864.c	ENSGT00390000012163.e.b	ENSGT00510000046929.b.e ##21	ENSGT00940000160880.f	ENSGT00990000209912.b	ENSGT00390000018781.z.a.b	ENSGT00940000155857.f.b.e	ENSGT00940000164716.B.c
Cyprininae_a	ANCESTRAL SPECIES	62	ENSGT00530000063582.a.c.a	ENSGT00510000047092.s	ENSGT00940000159536.g	ENSGT00390000012412	ENSGT00390000001803	ENSGT00940000155150.b.b.e	ENSGT00390000010397.a.d	ENSGT00390000007430.g	ENSGT00940000154783	ENSGT00960000187909	ENSGT00390000000360.a	ENSGT00940000159444.e	ENSGT00940000164188.h	ENSGT01060000248589.C.h.b	ENSGT00940000158744.b	ENSGT00390000012721.a.j.a.b ##22	ENSGT00950000183055.b.b.c ##23	ENSGT00940000165035.b	ENSGT00940000157254.s	ENSGT00940000156385.b.c	ENSGT00940000153168.C.a.a.b	ENSGT00940000156071.b.c	ENSGT00940000158849.a.b	ENSGT00940000160864.c	ENSGT00390000012163.e.b	ENSGT00510000046929.b.e ##21	ENSGT00940000160880.f	ENSGT00990000209912.b	ENSGT00390000018781.z.a.b	ENSGT00940000155857.f.b.e	ENSGT00940000164716.B.c
Golden-line barbel	MODERN SPECIES	38	ENSSGRG00000041675	ENSSGRG00000041676	sra1 (ENSSGRG00000041677)	camk2a (ENSSGRG00000041685)	cdx1b (ENSSGRG00000041738)	ndufa2 (ENSSGRG00000041739)	ammecr1 (ENSSGRG00000041743)	TMEM164 (ENSSGRG00000041744)	fundc2 (ENSSGRG00000041748)	ENSSGRG00000041750	BRCC3 (ENSSGRG00000041751)	GABRA3 (ENSSGRG00000041764)	ENSSGRG00000041802	ENSSGRG00000041855	mpp1 (ENSSGRG00000041859)	ndfip1l (ENSSGRG00000041937) ##22	spry4 (ENSSGRG00000042104) ##23	fgf1b (ENSSGRG00000042105)	ARHGAP26 (ENSSGRG00000042109)	NR3C1 (ENSSGRG00000042443)	yipf5 (ENSSGRG00000042473)	kctd16b (ENSSGRG00000042474)	PLAC8L1 (ENSSGRG00000042475)	LARS1 (ENSSGRG00000042493)	RBM27 (ENSSGRG00000043498) ##21	pou4f3 (ENSSGRG00000043499)	il13 (ENSSGRG00000043500)	il13 (ENSSGRG00000043508)	RAD50 (ENSSGRG00000043514)	drd1b (ENSSGRG00000043533)	msx2b (ENSSGRG00000043534)
Common carp reference	MODERN SPECIES	45	ENSCCRG00000059644	ENSCCRG00000073692	ENSCCRG00000063452	camk2a (ENSCCRG00000027028)	cdx1b (ENSCCRG00000009850)	ENSCCRG00000051647	ammecr1 (ENSCCRG00000065714)	ENSCCRG00000061573	fundc2 (ENSCCRG00000081450)	cmc4 (ENSCCRG00000055083)	ENSCCRG00000028618	ENSCCRG00000068762	ENSCCRG00000054131	ENSCCRG00000040913	ENSCCRG00000075064	ndfip1l (ENSCCRG00000079677) ##22	SPRY4 (ENSCCRG00000061294) ##23	ENSCCRG00000072800	ARHGAP26 (ENSCCRG00000000569)	NR3C1 (ENSCCRG00000069824)	yipf5 (ENSCCRG00000057489)	kctd16b (ENSCCRG00000078994)	GRXCR2 (ENSCCRG00000037642)	PLAC8L1 (ENSCCRG00000068397)	LARS1 (ENSCCRG00000040555)	RBM27 (ENSCCRG00000040207) ##21	ENSCCRG00000059391	pou4f3 (ENSCCRG00000059824)	ENSCCRG00000016289	ENSCCRG00000077990	il13 (ENSCCRG00000060350)
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	268						ENSGT00510000047420.l	ENSGT00940000160491.d.b.b	ENSGT00940000154894.a.b	ENSGT00390000006788.a.a.i.a	ENSGT00940000155470.a.b	ENSGT00440000037505.b.d.b	ENSGT00550000075136	ENSGT00940000156067.g.b.a.a	ENSGT00940000156067.g.b.a.b	ENSGT00390000014316.c.b	ENSGT00390000012721.a.j.b.a ##22	ENSGT00940000165035.a	ENSGT00940000156385.a.a	ENSGT00940000156071.a.b.b	ENSGT00940000156071.a.a	ENSGT00940000155875.m	ENSGT00940000156386.f	ENSGT00940000156386.e.a	ENSGT00990000209953.a	ENSGT00390000012721.a.j.b.b ##22	ENSGT00940000156385.a.b	ENSGT00940000156071.a.b.a.a	ENSGT00940000156386.e.b	ENSGT00990000209953.b	ENSGT00940000157037.a.d	ENSGT00940000164716.A.a
Cyprininae_a	ANCESTRAL SPECIES	104	ENSGT00940000159491.db.b	ENSGT00940000159568	ENSGT00950000183003.a.a.a.a.b.d	ENSGT00940000159784	ENSGT00390000017869.d	ENSGT00940000160376	ENSGT00510000047420.k.a	ENSGT00940000160491.d.b.a	ENSGT00940000165596.d	ENSGT00940000154894.a.a	ENSGT00390000006788.a.a.i.b.b	ENSGT00940000155470.a.a.b	ENSGT00440000037505.b.d.a	ENSGT00940000156067.g.b.b	ENSGT00390000014316.c.b	ENSGT00390000012721.a.j.b.a ##22	ENSGT00940000156385.a.a	ENSGT00940000156071.a.b.b	ENSGT00940000156071.a.a	ENSGT00940000155875.m	ENSGT00940000156386.f	ENSGT00940000156386.e.a	ENSGT00990000209953.a	ENSGT00940000157037.a.d.a	ENSGT00940000164716.A.b	ENSGT00940000154998.a.b.k.a	ENSGT00390000005989.a.b.b.b	ENSGT00940000158996.h	ENSGT00390000014412.l	ENSGT00940000162301	ENSGT00940000155070.a.b.a.b
Common carp reference	MODERN SPECIES	35	ENSCCRG00000056174	atp7a (ENSCCRG00000062965)	gdf9 (ENSCCRG00000067422)	nudt22 (ENSCCRG00000034982)	ENSCCRG00000034977	smyd5 (ENSCCRG00000071927)	ENSCCRG00000044432	ENSCCRG00000064019	ENSCCRG00000027125	ENSCCRG00000069106	ENSCCRG00000080121	ENSCCRG00000025589	med12 (ENSCCRG00000079047)	hspa4b (ENSCCRG00000011122)	gnpda1 (ENSCCRG00000053353)	ndfip1 (ENSCCRG00000062030) ##22	nr3c1 (ENSCCRG00000011027)	kctd16a (ENSCCRG00000031009)	ENSCCRG00000082172	kif3a (ENSCCRG00000005867)	il4 (ENSCCRG00000062646)	ENSCCRG00000060463	msx2a (ENSCCRG00000082142)	cpeb4a (ENSCCRG00000071205)	stc2a (ENSCCRG00000007402)	nkx2.5 (ENSCCRG00000007406)	BNIP1 (ENSCCRG00000007411)	dpf2l (ENSCCRG00000007368)	ENSCCRG00000082153	ENSCCRG00000040735	fam13b (ENSCCRG00000007416)
Goldfish	MODERN SPECIES	5	gabrb2a (ENSCARG00000011153)	atp7a (ENSCARG00000009632)	gdf9 (ENSCARG00000009496)	nudt22 (ENSCARG00000009482)	ENSCARG00000009467	ENSCARG00000009459	smyd5 (ENSCARG00000009444)	ENSCARG00000009434	ENSCARG00000009424	SLC4A11 (ENSCARG00000009333)	ENOX2 (ENSCARG00000009253)	ENSCARG00000009216	ENSCARG00000009174	hspa4b (ENSCARG00000009046)	gnpda1 (ENSCARG00000008994)	ndfip1 (ENSCARG00000008984) ##22	fgf1a (ENSCARG00000008975)	nr3c1 (ENSCARG00000008819)	kctd16a (ENSCARG00000008801)	ENSCARG00000008797	kif3a (ENSCARG00000008420)	il4 (ENSCARG00000008385)	ENSCARG00000008381	msx2a (ENSCARG00000008376)	cpeb4a (ENSCARG00000008113)	stc2a (ENSCARG00000008081)	nkx2.5 (ENSCARG00000008074)	BNIP1 (ENSCARG00000008054)	dpf2l (ENSCARG00000008017)	hnrnpa0a (ENSCARG00000008003)	fam13b (ENSCARG00000007927)
Cyprininae	ANCESTRAL SPECIES	268	ENSGT00940000155470.a.b	ENSGT00440000037505.b.d.b	ENSGT00550000075136	ENSGT00940000156067.g.b.a.a	ENSGT00940000156067.g.b.a.b	ENSGT00390000014316.c.b	ENSGT00390000012721.a.j.b.a ##22	ENSGT00940000165035.a	ENSGT00940000156385.a.a	ENSGT00940000156071.a.b.b	ENSGT00940000156071.a.a	ENSGT00940000155875.m	ENSGT00940000156386.f	ENSGT00940000156386.e.a	ENSGT00990000209953.a	ENSGT00390000012721.a.j.b.b ##22	ENSGT00940000156385.a.b	ENSGT00940000156071.a.b.a.a	ENSGT00940000156386.e.b	ENSGT00990000209953.b	ENSGT00940000157037.a.d	ENSGT00940000164716.A.a	ENSGT00940000154998.a.b.k.b	ENSGT00390000005989.a.b.b.a	ENSGT00940000164716.A.b	ENSGT00940000154998.a.b.k.a	ENSGT00390000005989.a.b.b.b	ENSGT00940000158996.h	ENSGT00390000014412.l	ENSGT00940000162301	ENSGT00940000155070.a.b.a.a
Goldfish	DUPLICATION
Goldfish	DUPLICATION
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	1859													med12 (ENSCARG00000064081)	MARS2 (ENSCARG00000064260)	hspa4b (ENSCARG00000064297)	ndfip1 (ENSCARG00000064681) ##22
Goldfish	MODERN SPECIES	32	gdf9 (ENSCARG00000063653)	ENSCARG00000063636	atp7a (ENSCARG00000063158)	ATP10B (ENSCARG00000062738)	gabrb2a (ENSCARG00000062425)	gabra6a (ENSCARG00000062373)	nudcd2 (ENSCARG00000062358)	ccng1 (ENSCARG00000062326)	gatad1 (ENSCARG00000062305)	tmx2a (ENSCARG00000062288)	si:dkey-6i22.5 (ENSCARG00000062283)	ENSCARG00000062270	med12 (ENSCARG00000062004)	MARS2 (ENSCARG00000061972)	hspa4b (ENSCARG00000060769)	ndfip1 (ENSCARG00000060662) ##22	nr3c1 (ENSCARG00000060515)	kctd16a (ENSCARG00000060484)	ENSCARG00000060458	kif3a (ENSCARG00000060327)	il4 (ENSCARG00000060309)	ENSCARG00000060304	msx2a (ENSCARG00000060278)	cpeb4a (ENSCARG00000060205)	stc2a (ENSCARG00000060172)	nkx2.5 (ENSCARG00000060156)	CHRM1 (ENSCARG00000060139)	dpf2l (ENSCARG00000059652)	ENSCARG00000059629	KLHL3 (ENSCARG00000058914)	fam13b (ENSCARG00000058522)
Goldfish	MODERN SPECIES	448																ndfip1 (ENSCARG00000044541) ##22	nr3c1 (ENSCARG00000044559)	kctd16a (ENSCARG00000044637)
Goldfish	MODERN SPECIES	2686																ndfip1 (ENSCARG00000069339) ##22
Cyprininae_a	ANCESTRAL SPECIES	467								ENSGT00510000047420.l	ENSGT00940000160491.d.b.b	ENSGT00940000154894.a.b	ENSGT00390000006788.a.a.i.a	ENSGT00940000155470.a.b	ENSGT00440000037505.b.d.b	ENSGT00550000075136	ENSGT00940000156067.g.b.a.a	ENSGT00390000012721.a.j.b.b ##22	ENSGT00940000156385.a.b	ENSGT00940000156071.a.b.a.a	ENSGT00940000156386.e.b	ENSGT00990000209953.b	ENSGT00940000157037.a.d.b	ENSGT00940000164716.A.a	ENSGT00940000154998.a.b.k.b	ENSGT00390000005989.a.b.b.a
Common carp reference	MODERN SPECIES	20	gabrb2a (ENSCCRG00000046281)	ENSCCRG00000028655	atp7a (ENSCCRG00000077206)	ENSCCRG00000016141	gdf9 (ENSCCRG00000016143)	nudt22 (ENSCCRG00000026670)	ENSCCRG00000046273	ENSCCRG00000046149	ENSCCRG00000077637	ENSCCRG00000071405	ENSCCRG00000079769	med12 (ENSCCRG00000020840)	ENSCCRG00000081068	hspa4b (ENSCCRG00000049313)	gnpda1 (ENSCCRG00000053604)	ndfip1 (ENSCCRG00000030991) ##22	nr3c1 (ENSCCRG00000030995)	kctd16a (ENSCCRG00000011025)	ENSCCRG00000062208	ENSCCRG00000005180	il4 (ENSCCRG00000052605)	ENSCCRG00000071522	ENSCCRG00000064430	msx2a (ENSCCRG00000004546)	cpeb4a (ENSCCRG00000073615)	stc2a (ENSCCRG00000032679)	ENSCCRG00000032673	ENSCCRG00000007360	dpf2l (ENSCCRG00000057318)	hnrnpa0a (ENSCCRG00000059572)	ENSCCRG00000039094
Zebrafish	DUPLICATION
Zebrafish	MODERN SPECIES	13	siah2l (ENSDARG00000044381)	rbmx2 (ENSDARG00000044380)	ENSDARG00000077746	slc25a14 (ENSDARG00000026680)	ENSDARG00000054060	pou4f4 (ENSDARG00000044375)	klf5l (ENSDARG00000018757)	klf8 (ENSDARG00000060661)	cldn2 (ENSDARG00000044387)	rbm41 (ENSDARG00000054096)	ripply1 (ENSDARG00000054103)	PRRG3 (ENSDARG00000079102)	ENSDARG00000108937	ENSDARG00000099096	mpp1 (ENSDARG00000105287)	ndfip1l (ENSDARG00000102367) ##22	AMOT (ENSDARG00000078335)	pgk1 (ENSDARG00000054191)	cox7b (ENSDARG00000115557)	pgrmc1 (ENSDARG00000054172)	FAM114A2 (ENSDARG00000079508)	mrps17 (ENSDARG00000054164)	ENSDARG00000060705	fgfr4 (ENSDARG00000069105)	znf346 (ENSDARG00000060695)	ENSDARG00000091187	zgc:77151 (ENSDARG00000054307)	ENSDARG00000069113	ENSDARG00000089800	GRK6 (ENSDARG00000032157)	nop16 (ENSDARG00000044402)
Zebrafish	MODERN SPECIES	5	ATP10B (ENSDARG00000076230)	ENSDARG00000037738	atp7a (ENSDARG00000003699)	ENSDARG00000079125	gdf9 (ENSDARG00000003229)	nudt22 (ENSDARG00000071671)	ENSDARG00000056830	smyd5 (ENSDARG00000071669)	ENSDARG00000074582	ENOX2 (ENSDARG00000078942)	ENSDARG00000076547	med12 (ENSDARG00000103953)	MARS2 (ENSDARG00000009218)	hspa4b (ENSDARG00000018989)	gnpda1 (ENSDARG00000037307)	ndfip1 (ENSDARG00000013979) ##22	fgf1a (ENSDARG00000017542)	nr3c1 (ENSDARG00000025032)	kctd16a (ENSDARG00000004648)	ENSDARG00000101178	kif3a (ENSDARG00000087538)	il4 (ENSDARG00000087909)	ENSDARG00000105377	ENSDARG00000071640	ENSDARG00000110728	msx2a (ENSDARG00000104651)	ENSDARG00000105348	cpeb4a (ENSDARG00000056691)	stc2a (ENSDARG00000056680)	nkx2.5 (ENSDARG00000018004)	BNIP1 (ENSDARG00000078259)
Characiphysae	ANCESTRAL SPECIES	60	ENSGT00940000160883.a	ENSGT00530000063000.a.b.a	ENSGT00940000158388.a.a	ENSGT00940000157904.b	ENSGT00940000158972	ENSGT00390000001134.b.`b.b	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00390000018781.w.a	ENSGT00390000018781.x	ENSGT00940000155857.f.b	ENSGT00940000164716.B
Channel catfish	DUPLICATION
Channel catfish	MODERN SPECIES	9	gucy2f (ENSIPUG00000012144)	ENSIPUG00000012132	GPR12 (ENSIPUG00000012125)	ENSIPUG00000012063	HTR2C (ENSIPUG00000012032)	tmem185a (ENSIPUG00000011988)	stk26 (ENSIPUG00000011923)	septin8a (ENSIPUG00000011782)	ENSIPUG00000011754	ENSIPUG00000011720	aff4 (ENSIPUG00000011689)	Zcchc10 (ENSIPUG00000011660)	HSPA4 (ENSIPUG00000011525)	rnf14 (ENSIPUG00000011466)	endou2 (ENSIPUG00000011459)	NFI1L (ENSIPUG00000011367) ##22	spry4 (ENSIPUG00000011350) ##23	Fgf1 (ENSIPUG00000011328)	ARHGAP26 (ENSIPUG00000010994)	nr3c1 (ENSIPUG00000010944)	yipf5 (ENSIPUG00000010902)	kctd16 (ENSIPUG00000010898)	grxcr2 (ENSIPUG00000010891)	ENSIPUG00000010884	lars (ENSIPUG00000010756)	RNF121 (ENSIPUG00000010700)	kif4 (ENSIPUG00000010666)	ammecr1 (ENSIPUG00000010641)	TMEM164 (ENSIPUG00000010615)	cmc4 (ENSIPUG00000010593)	FUNDC1 (ENSIPUG00000010565)
Channel catfish	MODERN SPECIES	5	csf1r (ENSIPUG00000009288)	pdgfrb (ENSIPUG00000009456)	cdx1 (ENSIPUG00000009477)	EXOSC3 (ENSIPUG00000009488)	nudt22 (ENSIPUG00000009503)	ENSIPUG00000009518	smyd5 (ENSIPUG00000009532)	ENSIPUG00000009583	ENSIPUG00000009609	ENOX2 (ENSIPUG00000009623)	ENSIPUG00000009667	med12 (ENSIPUG00000009787)	MARS2 (ENSIPUG00000009852)	hspa4b (ENSIPUG00000009875)	gnpda1 (ENSIPUG00000009918)	ndfip1l (ENSIPUG00000010007) ##22	fgf1a (ENSIPUG00000010050)	nr3c1 (ENSIPUG00000010081)	kctd16a (ENSIPUG00000010102)	ENSIPUG00000010109	KIF3A (ENSIPUG00000010161)	DRD1 (ENSIPUG00000010246)	MSX2 (ENSIPUG00000010256)	cpeb4a (ENSIPUG00000010268)	STC2 (ENSIPUG00000010313)	nkx2-5 (ENSIPUG00000010324)	bnip1 (ENSIPUG00000010328)	ENSIPUG00000010353	SLC34A1 (ENSIPUG00000010376)	ENSIPUG00000010459	rgs14a (ENSIPUG00000010477)
Characiphysae_b	ANCESTRAL SPECIES	6	ENSGT00940000164076.a.a	ENSGT00940000157094	ENSGT00940000158388.a.a	ENSGT00940000157904.b	ENSGT00940000158972	ENSGT00390000001134.b.`b.b	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067.g.a.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00390000018781.x	ENSGT00940000155857.f.b	ENSGT00940000164716.B	ENSGT00390000000483.a.a
Electric eel	DUPLICATION
Electric eel	MODERN SPECIES	372	parp16 (ENSEEEG00000008633)	scamp5a (ENSEEEG00000008635)	ENSEEEG00000008636	ubl7a (ENSEEEG00000008637)	acot19 (ENSEEEG00000008640)	lamb4 (ENSEEEG00000008657)	lamb1a (ENSEEEG00000008698)	dldh (ENSEEEG00000009082)	ENSEEEG00000009210	znf800a (ENSEEEG00000009212)	grm8b (ENSEEEG00000009214)	pot1 (ENSEEEG00000009215)	hspa4a (ENSEEEG00000009226)	rnf14 (ENSEEEG00000009986)	endou2 (ENSEEEG00000009993)	ndfip1l (ENSEEEG00000010001) ##22
Electric eel	MODERN SPECIES	106	pdgfrb (ENSEEEG00000014790)	cdx1a (ENSEEEG00000014791)	exosc3 (ENSEEEG00000014793)	nudt22 (ENSEEEG00000014796)	ENSEEEG00000014798	smyd5 (ENSEEEG00000014800)	ENSEEEG00000014833	ENSEEEG00000014834	SLC4A11 (ENSEEEG00000014835)	ENOX2 (ENSEEEG00000014836)	ENSEEEG00000014838	med12 (ENSEEEG00000014844)	MARS2 (ENSEEEG00000014852)	hspa4b (ENSEEEG00000014903)	gnpda1 (ENSEEEG00000015575)	ndfip1 (ENSEEEG00000015577) ##22	ENSEEEG00000015578	nr3c1 (ENSEEEG00000015582)	kctd16a (ENSEEEG00000015643)	ENSEEEG00000015644	kif3a (ENSEEEG00000015647)
Characoidei	ANCESTRAL SPECIES	17	ENSGT00940000164076.a.a	ENSGT00940000157094	ENSGT00940000158388.a.a	ENSGT00940000157904.b	ENSGT00940000158972	ENSGT00390000001134.b.`b.b	ENSGT00940000162679	ENSGT00940000156068.i	ENSGT00950000183003.a.a.a.a.b.c	ENSGT00940000160656	ENSGT00950000182974.a.a.b	ENSGT00940000168656	ENSGT00940000156067.g.a.a	ENSGT00940000154507.s	ENSGT00530000063825.A.d	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000165035.b	ENSGT00940000157254	ENSGT00940000156385.b	ENSGT00940000153168.C.a.a	ENSGT00940000156071.b	ENSGT00940000158849	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00390000018781.x	ENSGT00940000155857.f.b	ENSGT00940000164716.B	ENSGT00390000000483.a.a
Mexicana tetra	DUPLICATION
Mexicana tetra	MODERN SPECIES	129	tmem185 (ENSAMXG00000035538)	stk26 (ENSAMXG00000036199)	frmd7 (ENSAMXG00000020194)	ENSAMXG00000020185	ENSAMXG00000032265	CCNI2 (ENSAMXG00000035660)	septin8a (ENSAMXG00000020162)	SOWAHA (ENSAMXG00000034243)	ENSAMXG00000041446	AFF4 (ENSAMXG00000020137)	ENSAMXG00000029234	ENSAMXG00000020130	hspa4a (ENSAMXG00000020109)	rnf14 (ENSAMXG00000020091)	endou2 (ENSAMXG00000020081)	ndfip1l (ENSAMXG00000037274) ##22	spry4 (ENSAMXG00000024962) ##23	fgf1b (ENSAMXG00000043639)	ENSAMXG00000040962
Mexicana tetra	MODERN SPECIES	23	ENSAMXG00000043757	ENSAMXG00000024854	ENSAMXG00000015803	fgf18a (ENSAMXG00000034427)	ENSAMXG00000029171	fbxw11a (ENSAMXG00000015774)	etf1a (ENSAMXG00000037774)	SPOCK1 (ENSAMXG00000015732)	ENSAMXG00000030265	ENOX2 (ENSAMXG00000011589)	ENSAMXG00000011595	med12 (ENSAMXG00000011603)	MARS2 (ENSAMXG00000011610)	hspa4b (ENSAMXG00000011616)	gnpda1 (ENSAMXG00000011634)	ndfip1 (ENSAMXG00000011640) ##22	fgf1a (ENSAMXG00000035950)	nr3c1 (ENSAMXG00000011646)	kctd16a (ENSAMXG00000030164)	ENSAMXG00000041131	kif3a (ENSAMXG00000011654)	DRD1 (ENSAMXG00000025106)	ENSAMXG00000038880	cpeb4a (ENSAMXG00000030295)	ENSAMXG00000043304	stc2a (ENSAMXG00000037057)	nkx2.5 (ENSAMXG00000030019)	BNIP1 (ENSAMXG00000038546)	adra2db (ENSAMXG00000025107)	SLC34A1 (ENSAMXG00000018474)	ENSAMXG00000044001
Red-bellied piranha	DUPLICATION
Red-bellied piranha	MODERN SPECIES	73	ENSPNAG00000003963	atg4a (ENSPNAG00000025863)	ANKRD46 (ENSPNAG00000025887)	tmem185 (ENSPNAG00000025933)	stk26 (ENSPNAG00000005204)	frmd7 (ENSPNAG00000026085)	CCNI2 (ENSPNAG00000006260)	septin8a (ENSPNAG00000005865)	SOWAHA (ENSPNAG00000005600)	ENSPNAG00000026258	AFF4 (ENSPNAG00000004777)	ENSPNAG00000026350	hspa4a (ENSPNAG00000004058)	rnf14 (ENSPNAG00000004066)	endou2 (ENSPNAG00000026537)	ndfip1l (ENSPNAG00000026565) ##22	spry4 (ENSPNAG00000026599) ##23	fgf1b (ENSPNAG00000026613)	ARHGAP26 (ENSPNAG00000006266)	NR3C1 (ENSPNAG00000005159)	yipf5 (ENSPNAG00000026975)	kctd16b (ENSPNAG00000026987)	GRXCR2 (ENSPNAG00000005035)	PLAC8L1 (ENSPNAG00000027048)	LARS1 (ENSPNAG00000027191)	RBM27 (ENSPNAG00000027218) ##21	pou4f3 (ENSPNAG00000027241)	RAD50 (ENSPNAG00000027413)	drd1b (ENSPNAG00000027444)
Red-bellied piranha	MODERN SPECIES	95	SLC35A4 (ENSPNAG00000011134)	ENSPNAG00000005736	HMGXB3 (ENSPNAG00000011123)	csf1ra (ENSPNAG00000011099)	pdgfrb (ENSPNAG00000011017)	cdx1a (ENSPNAG00000010979)	exosc3 (ENSPNAG00000010975)	nudt22 (ENSPNAG00000010939)	ENSPNAG00000001472	smyd5 (ENSPNAG00000001464)	ENSPNAG00000010866	ENSPNAG00000010851	SLC4A11 (ENSPNAG00000010831)	hspa4b (ENSPNAG00000010764)	gnpda1 (ENSPNAG00000001421)	ndfip1 (ENSPNAG00000010636) ##22	fgf1a (ENSPNAG00000010607)	nr3c1 (ENSPNAG00000010593)	kctd16a (ENSPNAG00000010562)	ENSPNAG00000001406	ENSPNAG00000010543	kif3a (ENSPNAG00000010505)	DRD1 (ENSPNAG00000010364)	MSX2 (ENSPNAG00000010350)	cpeb4a (ENSPNAG00000010337)	stc2a (ENSPNAG00000010234)	nkx2.5 (ENSPNAG00000010223)	BNIP1 (ENSPNAG00000010213)	ENSPNAG00000010184	SLC34A1 (ENSPNAG00000010150)	rgs14a (ENSPNAG00000010119)
Spotted gar	MODERN SPECIES	672	GABRG2 (ENSLOCG00000010690)	nudcd2 (ENSLOCG00000010683)	ccng1 (ENSLOCG00000010677)	CCNI2 (ENSLOCG00000010667)	septin8a (ENSLOCG00000010651)	SOWAHA (ENSLOCG00000010647)	ENSLOCG00000010639	gdf9 (ENSLOCG00000010635)	uqcrq (ENSLOCG00000010627)	AFF4 (ENSLOCG00000010610)	zcchc10 (ENSLOCG00000010604)	hspa4b (ENSLOCG00000010589)	rnf14 (ENSLOCG00000010578)	gnpda1 (ENSLOCG00000010571)	endou2 (ENSLOCG00000010565)	ndfip1l (ENSLOCG00000010551) ##22	FGF1 (ENSLOCG00000010543)	ARHGAP26 (ENSLOCG00000010520)	nr3c1 (ENSLOCG00000010508)	yipf5 (ENSLOCG00000010498)	kctd16b (ENSLOCG00000010491)	PRELID2 (ENSLOCG00000010485)	GRXCR2 (ENSLOCG00000010466)	PLAC8L1 (ENSLOCG00000010461)	ENSLOCG00000010451	LARS1 (ENSLOCG00000010442)	RBM27 (ENSLOCG00000010426) ##21	pou4f3 (ENSLOCG00000010420)	kif3a (ENSLOCG00000010399)	RAD50 (ENSLOCG00000010392)	p4ha2 (ENSLOCG00000010375)
Reedfish	MODERN SPECIES	2	GABRG2 (ENSECRG00000014086)	nudcd2 (ENSECRG00000014169)	ccng1 (ENSECRG00000014190)	CCNI2 (ENSECRG00000014209)	septin8a (ENSECRG00000014339)	SOWAHA (ENSECRG00000014563)	ENSECRG00000007827	gdf9 (ENSECRG00000007841)	uqcrq (ENSECRG00000007848)	AFF4 (ENSECRG00000007860)	ZCCHC10 (ENSECRG00000007885)	hspa4b (ENSECRG00000007900)	rnf14 (ENSECRG00000007922)	gnpda1 (ENSECRG00000007935)	endou2 (ENSECRG00000007952)	ndfip1l (ENSECRG00000007968) ##22	spry4 (ENSECRG00000007982) ##23	FGF1 (ENSECRG00000007992)	ARHGAP26 (ENSECRG00000008023)	nr3c1 (ENSECRG00000008039)	yipf5 (ENSECRG00000008055)	kctd16b (ENSECRG00000008089)	PRELID2 (ENSECRG00000008100)	GRXCR2 (ENSECRG00000008117)	SH3RF2 (ENSECRG00000008126)	PLAC8L1 (ENSECRG00000008142)	ENSECRG00000008158	LARS1 (ENSECRG00000008180)	RBM27 (ENSECRG00000008253) ##21	pou4f3 (ENSECRG00000008275)	kif3a (ENSECRG00000008309)
Sarcopterygii	ANCESTRAL SPECIES	47		ENSGT00390000018781	ENSGT00940000156386	ENSGT00940000162679	ENSGT00940000156068	ENSGT00950000183003.a.a.a.a.b	ENSGT00940000160656	ENSGT00940000159784	ENSGT00390000004029	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00530000063825.A.d	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
Coelacanth	MODERN SPECIES	1120		KIF3A (ENSLACG00000004822)	CCNI2 (ENSLACG00000005697)	SEPTIN8 (ENSLACG00000005880)	SOWAHA (ENSLACG00000007318)	ENSLACG00000007532	GDF9 (ENSLACG00000008346)	UQCRQ (ENSLACG00000008524)	AFF4 (ENSLACG00000008849)	ENSLACG00000009069	ZCCHC10 (ENSLACG00000009762)	HSPA4 (ENSLACG00000010299)	RNF14 (ENSLACG00000010710)	gnpda1 (ENSLACG00000010995)	endou2 (ENSLACG00000011188)	NDFIP1 (ENSLACG00000011391) ##22	SPRY4 (ENSLACG00000012427) ##23	FGF1 (ENSLACG00000013294)
Tetrapoda	ANCESTRAL SPECIES	29	ENSGT00940000156288	ENSGT00390000018781	ENSGT00940000156386	ENSGT00940000162679	ENSGT00940000156068	ENSGT00950000183003.a.a.a.a.b	ENSGT00940000160656	ENSGT00940000159784	ENSGT00390000004029	ENSGT00390000013467	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
Amniota	ANCESTRAL SPECIES	17	ENSGT00390000018781	ENSGT00390000013108	ENSGT00940000156386	ENSGT00940000162679	ENSGT00940000156068	ENSGT00950000183003.a.a.a.a.b	ENSGT00940000160656	ENSGT00940000159784	ENSGT00390000004029	ENSGT00390000013467	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
Mammalia	ANCESTRAL SPECIES	32	ENSGT00390000018781	ENSGT00390000013108	ENSGT00940000156386	ENSGT00940000162679	ENSGT00940000156068	ENSGT00950000183003.a.a.a.a.b	ENSGT00940000160656	ENSGT00940000159784	ENSGT00390000004029	ENSGT00390000013467	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
Platypus	MODERN SPECIES	84	RAD50 (ENSOANG00000008019)	KIF3A (ENSOANG00000007422)	ENSOANG00000007421	SEPTIN8 (ENSOANG00000007424)	SOWAHA (ENSOANG00000036102)	ENSOANG00000049290	GDF9 (ENSOANG00000044501)	UQCRQ (ENSOANG00000042160)	LEAP2 (ENSOANG00000048336)	ENSOANG00000048396	AFF4 (ENSOANG00000007428)	ENSOANG00000007429	HSPA4 (ENSOANG00000007430)	RNF14 (ENSOANG00000007432)	ENSOANG00000038385	NDFIP1 (ENSOANG00000044026) ##22	SPRY4 (ENSOANG00000050843) ##23	ARHGAP26 (ENSOANG00000046105)	NR3C1 (ENSOANG00000005745)	YIPF5 (ENSOANG00000005747)	KCTD16 (ENSOANG00000005749)	PRELID2 (ENSOANG00000043534)	GRXCR2 (ENSOANG00000050122)	SH3RF2 (ENSOANG00000005754)	ENSOANG00000032054	LARS1 (ENSOANG00000005755)	RBM27 (ENSOANG00000012563) ##21	ENSOANG00000008710	DPYSL3 (ENSOANG00000012564)	JAKMIP2 (ENSOANG00000012565)	SFXN1 (ENSOANG00000049587)
Theria	ANCESTRAL SPECIES	18	ENSGT00940000161193	ENSGT00940000159725	ENSGT00940000156683	ENSGT00940000164266	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
Marsupialia	ANCESTRAL SPECIES	9	ENSGT00940000163564.k	ENSGT00390000008200	ENSGT00940000160554	ENSGT00940000161193.k.b.b	ENSGT00970000196845	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b.ab	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT01070000253822.E	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770
Opossum	MODERN SPECIES		PCDHGC5 (ENSMODG00000010717)	ENSMODG00000023762	ENSMODG00000043427	ENSMODG00000023761	ENSMODG00000050868	DIAPH1 (ENSMODG00000010684)	HDAC3 (ENSMODG00000010634)	RELL2 (ENSMODG00000010603)	FCHSD1 (ENSMODG00000010585)	ARAP3 (ENSMODG00000010533)	PCDH1 (ENSMODG00000010471)	DELE1 (ENSMODG00000010456)	PCDH12 (ENSMODG00000010441)	RNF14 (ENSMODG00000010433)	ENSMODG00000010398	NDFIP1 (ENSMODG00000010383) ##22	SPRY4 (ENSMODG00000023756) ##23	FGF1 (ENSMODG00000029105)	ARHGAP26 (ENSMODG00000010362)	NR3C1 (ENSMODG00000010319)	ENSMODG00000010314	YIPF5 (ENSMODG00000010287)	KCTD16 (ENSMODG00000023742)	PRELID2 (ENSMODG00000010256)	GRXCR2 (ENSMODG00000023740)	SH3RF2 (ENSMODG00000010250)	PLAC8L1 (ENSMODG00000010239)	LARS1 (ENSMODG00000010231)	RBM27 (ENSMODG00000010182) ##21	POU4F3 (ENSMODG00000010137)	TCERG1 (ENSMODG00000010124)
Marsupialia_b	ANCESTRAL SPECIES	5			ENSGT00940000161193.l	ENSGT00940000159725.n	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b.ab	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT01070000253822.E	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770
Tasmanian devil	MODERN SPECIES	1	ENSSHAG00000027016	ENSSHAG00000027052	ENSSHAG00000022185	ENSSHAG00000008675	PCDHGA2 (ENSSHAG00000009569)	ENSSHAG00000029672	ENSSHAG00000010517	ARAP3 (ENSSHAG00000020914)	RELL2 (ENSSHAG00000011052)	FCHSD1 (ENSSHAG00000011119)	PCDH1 (ENSSHAG00000021186)	DELE1 (ENSSHAG00000012735)	PCDH12 (ENSSHAG00000012818)	RNF14 (ENSSHAG00000012984)	GNPDA1 (ENSSHAG00000013086)	NDFIP1 (ENSSHAG00000023493) ##22	SPRY4 (ENSSHAG00000024412) ##23	FGF1 (ENSSHAG00000009313)	ARHGAP26 (ENSSHAG00000011097)	NR3C1 (ENSSHAG00000001727)	YIPF5 (ENSSHAG00000004034)	KCTD16 (ENSSHAG00000005464)	PRELID2 (ENSSHAG00000024365)	GRXCR2 (ENSSHAG00000008086)	SH3RF2 (ENSSHAG00000002066)	LARS1 (ENSSHAG00000006084)	RBM27 (ENSSHAG00000006988) ##21	POU4F3 (ENSSHAG00000008089)	TCERG1 (ENSSHAG00000009179)	GPR151 (ENSSHAG00000026077)	STK32A (ENSSHAG00000013781)
Diprotodontia	ANCESTRAL SPECIES	6			ENSGT00940000156683.h	ENSGT00940000159725.m.b.a	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b.ab	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT01070000253822.E	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770
Wallaby	MODERN SPECIES	3710																ENSMEUG00000002072 ##22
Diprotodontia_a	ANCESTRAL SPECIES	7			ENSGT00940000156683.h	ENSGT00940000159725.m.b.a	ENSGT00970000196845	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b.ab	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT01070000253822.E.l.a	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770
Common wonbat	MODERN SPECIES	1087				ENSVURG00010009468	ENSVURG00010009403	ENSVURG00010009335	HDAC3 (ENSVURG00010009316)	RELL2 (ENSVURG00010009310)	FCHSD1 (ENSVURG00010009285)	ENSVURG00010009235	PCDH1 (ENSVURG00010009210)	DELE1 (ENSVURG00010009189)	PCDH12 (ENSVURG00010009180)	RNF14 (ENSVURG00010009162)	GNPDA1 (ENSVURG00010009154)	NDFIP1 (ENSVURG00010009127) ##22	SPRY4 (ENSVURG00010009111) ##23	FGF1 (ENSVURG00010009086)	ARHGAP26 (ENSVURG00010009050)	NR3C1 (ENSVURG00010009008)	ENSVURG00010008958	YIPF5 (ENSVURG00010008949)	KCTD16 (ENSVURG00010008934)	PRELID2 (ENSVURG00010008901)	GRXCR2 (ENSVURG00010008892)	SH3RF2 (ENSVURG00010008874)	LARS1 (ENSVURG00010008801)	RBM27 (ENSVURG00010008743) ##21	POU4F3 (ENSVURG00010008715)	GPR151 (ENSVURG00010008710)	TCERG1 (ENSVURG00010008636)
koala	DUPLICATION
koala	MODERN SPECIES	471										ENSPCIG00000036370	ENSPCIG00000002511	ENSPCIG00000005414	ENSPCIG00000031654	ENSPCIG00000035091	ENSPCIG00000005057	ENSPCIG00000036630 ##22
koala	MODERN SPECIES	107	ENSPCIG00000004793	ENSPCIG00000033515	ENSPCIG00000032427	ENSPCIG00000032309	ENSPCIG00000012530	HDAC3 (ENSPCIG00000029855)	RELL2 (ENSPCIG00000029856)	FCHSD1 (ENSPCIG00000029858)	ARAP3 (ENSPCIG00000029861)	PCDH1 (ENSPCIG00000029870)	PCDH12 (ENSPCIG00000029873)	DELE1 (ENSPCIG00000029872)	RNF14 (ENSPCIG00000029875)	ENSPCIG00000029876	ENSPCIG00000029880	NDFIP1 (ENSPCIG00000029878) ##22	SPRY4 (ENSPCIG00000029884) ##23	FGF1 (ENSPCIG00000029890)	ARHGAP26 (ENSPCIG00000029894)	NR3C1 (ENSPCIG00000029903)	ENSPCIG00000029905	ENSPCIG00000029156	ENSPCIG00000029155	YIPF5 (ENSPCIG00000029154)	KCTD16 (ENSPCIG00000016358)
Eutheria	ANCESTRAL SPECIES	6	ENSGT00940000164018	ENSGT00940000159725	ENSGT00940000156683.j	ENSGT00940000162232	ENSGT00940000164266	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
Atlantogenata	ANCESTRAL SPECIES		ENSGT00940000164906	ENSGT00940000164488	ENSGT00940000156683.i	ENSGT00940000164266	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507.n	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
Afrotheria	ANCESTRAL SPECIES	7	ENSGT00940000160554	ENSGT00940000162745	ENSGT00940000163333	ENSGT00940000161193	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507.n	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b	ENSGT00950000182864.a.b.b.a.b.a.b
Tenrec	MODERN SPECIES	2760																NDFIP1 (ENSETEG00000013894) ##22
Afrotheria_a	ANCESTRAL SPECIES	7	ENSGT00940000160554	ENSGT00940000162745	ENSGT00940000163333	ENSGT00940000161193	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507.n	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b	ENSGT00950000182864.a.b.b.a.b.a.b
Elephant	MODERN SPECIES	2	PCDHB1 (ENSLAFG00000005554)	PCDHB2 (ENSLAFG00000009131)	PCDHB3 (ENSLAFG00000008803)	ENSLAFG00000001302	PCDHGC5 (ENSLAFG00000004545)	DIAPH1 (ENSLAFG00000007578)	ENSLAFG00000007960	RELL2 (ENSLAFG00000031336)	FCHSD1 (ENSLAFG00000028321)	ARAP3 (ENSLAFG00000007967)	ENSLAFG00000032418	DELE1 (ENSLAFG00000017081)	PCDH12 (ENSLAFG00000017085)	RNF14 (ENSLAFG00000007438)	GNPDA1 (ENSLAFG00000003999)	NDFIP1 (ENSLAFG00000016964) ##22	FGF1 (ENSLAFG00000005484)	ARHGAP26 (ENSLAFG00000017734)	NR3C1 (ENSLAFG00000005015)	YIPF5 (ENSLAFG00000016961)	KCTD16 (ENSLAFG00000016966)	PRELID2 (ENSLAFG00000018461)	GRXCR2 (ENSLAFG00000018464)	SH3RF2 (ENSLAFG00000000315)	PLAC8L1 (ENSLAFG00000000316)	LARS1 (ENSLAFG00000000318)	RBM27 (ENSLAFG00000022447) ##21	POU4F3 (ENSLAFG00000006932)	ENSLAFG00000026509	TCERG1 (ENSLAFG00000013796)	GPR151 (ENSLAFG00000013805)
Hyrax	MODERN SPECIES	2247																ENSPCAG00000004801 ##22
Xenarthra	ANCESTRAL SPECIES	54	ENSGT00940000159725	ENSGT00940000164906	ENSGT00940000164488	ENSGT00940000156683.i	ENSGT00940000164266	ENSGT00940000157822	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507.n	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071
Armadillo	MODERN SPECIES	927	PCDHGA2 (ENSDNOG00000031483)	ENSDNOG00000046135	PCDHGC3 (ENSDNOG00000033508)	PCDHGA8 (ENSDNOG00000024744)	PCDHGB5 (ENSDNOG00000045032)	ENSDNOG00000007243	HDAC3 (ENSDNOG00000008318)	RELL2 (ENSDNOG00000047431)	FCHSD1 (ENSDNOG00000043146)	ARAP3 (ENSDNOG00000008355)	PCDH1 (ENSDNOG00000039222)	DELE1 (ENSDNOG00000002303)	PCDH12 (ENSDNOG00000035553)	ENSDNOG00000000698	GNPDA1 (ENSDNOG00000007804)	NDFIP1 (ENSDNOG00000002760) ##22	SPRY4 (ENSDNOG00000039808) ##23	FGF1 (ENSDNOG00000018018)	ARHGAP26 (ENSDNOG00000000580)	NR3C1 (ENSDNOG00000010685)	ENSDNOG00000043895	ENSDNOG00000014497	ENSDNOG00000006671	ENSDNOG00000035490	ENSDNOG00000041216	ENSDNOG00000045708
Boreoeutheria	ANCESTRAL SPECIES	9	ENSGT00940000164213	ENSGT00940000164848	ENSGT00940000164062	ENSGT00940000164266	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00390000009781	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00910000146907	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880
Euarchontoglires	ANCESTRAL SPECIES	8	ENSGT00940000164848	ENSGT00940000164062.a	ENSGT00940000164062.b	ENSGT00940000164266	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00390000009781	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00910000146907	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880
Euarchontoglires_A	ANCESTRAL SPECIES	8	ENSGT00940000164848	ENSGT00940000164062.a	ENSGT00940000164062.b	ENSGT00940000164266	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
Tree shrew	MODERN SPECIES	7653																NDFIP1 (ENSTBEG00000008493) ##22
Glires	ANCESTRAL SPECIES	7	ENSGT00940000164848	ENSGT00940000164062.a	ENSGT00940000164062.b	ENSGT00940000164266	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
Rodentia	ANCESTRAL SPECIES	7	ENSGT00940000164848	ENSGT00940000164062.a	ENSGT00940000164062.b	ENSGT00940000164266	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
Rodentia_A	ANCESTRAL SPECIES	7	ENSGT00940000164906	ENSGT00940000163837.B	ENSGT00940000165041	ENSGT00940000163837.A	ENSGT00940000163745	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
Sciuridae	ANCESTRAL SPECIES	18	ENSGT01030000234870	ENSGT00940000163837.B	ENSGT00940000165041	ENSGT00940000163837.A	ENSGT00940000163745	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
Marmotini	DUPLICATION
Marmotini	ANCESTRAL SPECIES	23	ENSGT00940000160861	ENSGT01030000234870	ENSGT00940000156683.j	ENSGT00940000175746.b	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b.z	ENSGT00390000012721.a.w ##22	ENSGT00390000006350.m.a.c.b.a.b.d	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770
Marmotini_b	ANCESTRAL SPECIES	16	ENSGT00940000163424	ENSGT00940000160861	ENSGT01030000234870	ENSGT00940000175746.b	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b.z	ENSGT00390000012721.a.w ##22	ENSGT00390000006350.m.a.c.b.a.b.d	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770
Arctic ground squirrel	MODERN SPECIES	29	SLC25A2 (ENSUPAG00010008107)	TAF7 (ENSUPAG00010008113)	PCDHGC5 (ENSUPAG00010008115)	ENSUPAG00010008182	ENSUPAG00010008183	DIAPH1 (ENSUPAG00010008219)	HDAC3 (ENSUPAG00010012085)	RELL2 (ENSUPAG00010012113)	FCHSD1 (ENSUPAG00010012138)	ARAP3 (ENSUPAG00010012158)	PCDH1 (ENSUPAG00010012232)	DELE1 (ENSUPAG00010012242)	PCDH12 (ENSUPAG00010012266)	RNF14 (ENSUPAG00010012274)	ENSUPAG00010012327	NDFIP1 (ENSUPAG00010012343) ##22	ENSUPAG00010012352	SPRY4 (ENSUPAG00010012357) ##23	FGF1 (ENSUPAG00010012366)	ARHGAP26 (ENSUPAG00010012389)	NR3C1 (ENSUPAG00010012427)	ENSUPAG00010012461	YIPF5 (ENSUPAG00010012467)	KCTD16 (ENSUPAG00010012480)	PRELID2 (ENSUPAG00010012501)	GRXCR2 (ENSUPAG00010012512)	SH3RF2 (ENSUPAG00010012520)	PLAC8L1 (ENSUPAG00010012550)	ENSUPAG00010012555	LARS1 (ENSUPAG00010012568)	RBM27 (ENSUPAG00010012601) ##21
Squirrel	MODERN SPECIES	104	PCDHB15 (ENSSTOG00000028269)	ENSSTOG00000031859	TAF7 (ENSSTOG00000012033)	ENSSTOG00000029817	PCDHGC4 (ENSSTOG00000019457)	DIAPH1 (ENSSTOG00000021517)	HDAC3 (ENSSTOG00000016240)	RELL2 (ENSSTOG00000016242)	FCHSD1 (ENSSTOG00000016246)	ARAP3 (ENSSTOG00000021570)	PCDH1 (ENSSTOG00000020392)	DELE1 (ENSSTOG00000001010)	PCDH12 (ENSSTOG00000019558)	RNF14 (ENSSTOG00000016506)	ENSSTOG00000016508	ENSSTOG00000005153 ##22	SPRY4 (ENSSTOG00000005175) ##23	FGF1 (ENSSTOG00000027551)	ARHGAP26 (ENSSTOG00000016522)	NR3C1 (ENSSTOG00000016527)	YIPF5 (ENSSTOG00000023465)	KCTD16 (ENSSTOG00000007741)	PRELID2 (ENSSTOG00000002416)	GRXCR2 (ENSSTOG00000002429)	SH3RF2 (ENSSTOG00000002435)	PLAC8L1 (ENSSTOG00000002447)	LARS1 (ENSSTOG00000002356)	RBM27 (ENSSTOG00000002378) ##21	POU4F3 (ENSSTOG00000021302)	TCERG1 (ENSSTOG00000024158)	GPR151 (ENSSTOG00000006259)
Alpin marmot	MODERN SPECIES		TAF7 (ENSMMMG00000011460)	ENSMMMG00000011463	PCDHGC5 (ENSMMMG00000011469)	PCDHGB4 (ENSMMMG00000011714)	ENSMMMG00000011733	ENSMMMG00000011776	HDAC3 (ENSMMMG00000017747)	RELL2 (ENSMMMG00000017758)	FCHSD1 (ENSMMMG00000017794)	ARAP3 (ENSMMMG00000017803)	PCDH1 (ENSMMMG00000017847)	DELE1 (ENSMMMG00000017857)	PCDH12 (ENSMMMG00000017873)	RNF14 (ENSMMMG00000017879)	GNPDA1 (ENSMMMG00000017886)	NDFIP1 (ENSMMMG00000017910) ##22	ENSMMMG00000017919	SPRY4 (ENSMMMG00000017922) ##23	FGF1 (ENSMMMG00000017970)	ARHGAP26 (ENSMMMG00000018025)	NR3C1 (ENSMMMG00000018086)	YIPF5 (ENSMMMG00000018156)	KCTD16 (ENSMMMG00000018206)	PRELID2 (ENSMMMG00000018271)	GRXCR2 (ENSMMMG00000018280)	SH3RF2 (ENSMMMG00000018315)	PLAC8L1 (ENSMMMG00000018328)	LARS1 (ENSMMMG00000018343)	RBM27 (ENSMMMG00000018396) ##21	POU4F3 (ENSMMMG00000018463)	TCERG1 (ENSMMMG00000018467)
Marmotini	ANCESTRAL SPECIES																	ENSGT00390000012721.a.x ##22
Marmotini_b	ANCESTRAL SPECIES																	ENSGT00390000012721.a.x ##22
Squirrel	MODERN SPECIES	283									NAP1L2 (ENSSTOG00000025991)	ENSSTOG00000031172	ENSSTOG00000029279	CDX4 (ENSSTOG00000028493)	ENSSTOG00000034510	CHIC1 (ENSSTOG00000007909)	ENSSTOG00000026893	ENSSTOG00000023848 ##22	ZCCHC13 (ENSSTOG00000011570)	SLC16A2 (ENSSTOG00000026933)	RLIM (ENSSTOG00000023752)	NEXMIF (ENSSTOG00000029557)	ABCB7 (ENSSTOG00000011334)	ENSSTOG00000025861	UPRT (ENSSTOG00000007045)	ZDHHC15 (ENSSTOG00000001592)	MAGEE2 (ENSSTOG00000026571)	ENSSTOG00000033839	PBDC1 (ENSSTOG00000000892)	MAGEE1 (ENSSTOG00000010904)	ENSSTOG00000028105	FGF16 (ENSSTOG00000014766)	ATRX (ENSSTOG00000027917)
Eurasian red squirrel	MODERN SPECIES	15	PCDHGB1 (ENSSVLG00005018245)	PCDHGA5 (ENSSVLG00005018159)	ENSSVLG00005018124	PCDHGA4 (ENSSVLG00005017227)	DIAPH1 (ENSSVLG00005016486)	HDAC3 (ENSSVLG00005016412)	RELL2 (ENSSVLG00005016319)	FCHSD1 (ENSSVLG00005016278)	ARAP3 (ENSSVLG00005015301)	PCDH1 (ENSSVLG00005015152)	DELE1 (ENSSVLG00005015099)	PCDH12 (ENSSVLG00005015023)	RNF14 (ENSSVLG00005014906)	GNPDA1 (ENSSVLG00005014862)	ENSSVLG00005014842	NDFIP1 (ENSSVLG00005014802) ##22	ENSSVLG00005014780 ##23	FGF1 (ENSSVLG00005014706)	ARHGAP26 (ENSSVLG00005014462)	NR3C1 (ENSSVLG00005014315)	ENSSVLG00005014244	YIPF5 (ENSSVLG00005014133)	KCTD16 (ENSSVLG00005014093)	PRELID2 (ENSSVLG00005013978)	GRXCR2 (ENSSVLG00005013907)	SH3RF2 (ENSSVLG00005013856)	PLAC8L1 (ENSSVLG00005013826)	LARS1 (ENSSVLG00005013721)	RBM27 (ENSSVLG00005013583) ##21	POU4F3 (ENSSVLG00005013484)	TCERG1 (ENSSVLG00005013340)
Hystricomorpha	ANCESTRAL SPECIES	27	ENSGT00940000164906	ENSGT00940000163837.B	ENSGT00940000159725.k	ENSGT00940000164266	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
Hystricomorpha_a	ANCESTRAL SPECIES	24	ENSGT00940000164906	ENSGT00940000163837.B	ENSGT00940000159725.k	ENSGT00940000164266	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
Hystricomorpha_b	ANCESTRAL SPECIES	57	ENSGT00940000164906	ENSGT00940000163837.B	ENSGT00940000159725.k	ENSGT00940000164266	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
Degu	MODERN SPECIES	226	PCDHGA11 (ENSODEG00000012695)	ENSODEG00000012563	PCDHGC3 (ENSODEG00000020090)	PCDHGC4 (ENSODEG00000012720)	DIAPH1 (ENSODEG00000011691)	HDAC3 (ENSODEG00000013234)	RELL2 (ENSODEG00000010688)	FCHSD1 (ENSODEG00000011662)	ARAP3 (ENSODEG00000015338)	ENSODEG00000011015	PCDH1 (ENSODEG00000013806)	DELE1 (ENSODEG00000010984)	PCDH12 (ENSODEG00000010851)	ENSODEG00000010454	GNPDA1 (ENSODEG00000010602)	NDFIP1 (ENSODEG00000012497) ##22	ENSODEG00000019847	SPRY4 (ENSODEG00000010979) ##23	FGF1 (ENSODEG00000010661)	ARHGAP26 (ENSODEG00000012456)	ENSODEG00000011051	YIPF5 (ENSODEG00000011644)	KCTD16 (ENSODEG00000011222)
Long-tailed chinchilla	MODERN SPECIES	122	ENSCLAG00000012552	ENSCLAG00000017912	TAF7 (ENSCLAG00000011073)	PCDHGB2 (ENSCLAG00000012061)	PCDHGC3 (ENSCLAG00000011461)	DIAPH1 (ENSCLAG00000015293)	HDAC3 (ENSCLAG00000014357)	RELL2 (ENSCLAG00000011716)	FCHSD1 (ENSCLAG00000011207)	ARAP3 (ENSCLAG00000012705)	PCDH1 (ENSCLAG00000016393)	DELE1 (ENSCLAG00000017360)	ENSCLAG00000013861	RNF14 (ENSCLAG00000014054)	GNPDA1 (ENSCLAG00000013704)	NDFIP1 (ENSCLAG00000016618) ##22	FGF1 (ENSCLAG00000009907)	ARHGAP26 (ENSCLAG00000012088)	NR3C1 (ENSCLAG00000009640)	ENSCLAG00000011558	YIPF5 (ENSCLAG00000011264)	KCTD16 (ENSCLAG00000011042)	PRELID2 (ENSCLAG00000016109)	GRXCR2 (ENSCLAG00000014652)	ENSCLAG00000014607	SH3RF2 (ENSCLAG00000014809)	PLAC8L1 (ENSCLAG00000016637)	ENSCLAG00000011566	LARS1 (ENSCLAG00000011193)	RBM27 (ENSCLAG00000016106) ##21	ENSCLAG00000011866
Guinea pig	MODERN SPECIES	6	ENSCPOG00000001688	PCDHB15 (ENSCPOG00000036858)	TAF7 (ENSCPOG00000034331)	PCDHGA1 (ENSCPOG00000020995)	PCDHGA6 (ENSCPOG00000030704)	DIAPH1 (ENSCPOG00000019643)	HDAC3 (ENSCPOG00000014275)	RELL2 (ENSCPOG00000014276)	FCHSD1 (ENSCPOG00000020773)	ARAP3 (ENSCPOG00000012363)	PCDH1 (ENSCPOG00000005750)	DELE1 (ENSCPOG00000005755)	PCDH12 (ENSCPOG00000005759)	RNF14 (ENSCPOG00000002723)	GNPDA1 (ENSCPOG00000002726)	NDFIP1 (ENSCPOG00000009399) ##22	SPRY4 (ENSCPOG00000039083) ##23	FGF1 (ENSCPOG00000034859)	ARHGAP26 (ENSCPOG00000008244)	NR3C1 (ENSCPOG00000005188)	YIPF5 (ENSCPOG00000030944)	KCTD16 (ENSCPOG00000009247)	PRELID2 (ENSCPOG00000036397)	GRXCR2 (ENSCPOG00000003348)	SH3RF2 (ENSCPOG00000012171)	PLAC8L1 (ENSCPOG00000012172)	LARS1 (ENSCPOG00000012329)	RBM27 (ENSCPOG00000002498) ##21	POU4F3 (ENSCPOG00000025610)	TCERG1 (ENSCPOG00000003041)	GPR151 (ENSCPOG00000003044)
Naked mole-rat female	MODERN SPECIES	25	TAF7 (ENSHGLG00000050349)	ENSHGLG00000046870	ENSHGLG00000040713	PCDHGB4 (ENSHGLG00000008984)	PCDHGA8 (ENSHGLG00000033339)	DIAPH1 (ENSHGLG00000011183)	HDAC3 (ENSHGLG00000007216)	RELL2 (ENSHGLG00000006031)	FCHSD1 (ENSHGLG00000006085)	ARAP3 (ENSHGLG00000006972)	PCDH1 (ENSHGLG00000009729)	DELE1 (ENSHGLG00000010824)	PCDH12 (ENSHGLG00000003799)	RNF14 (ENSHGLG00000004111)	GNPDA1 (ENSHGLG00000005017)	NDFIP1 (ENSHGLG00000006077) ##22	ENSHGLG00000007479	ENSHGLG00000007801 ##23	FGF1 (ENSHGLG00000037888)	ENSHGLG00000032544	ENSHGLG00000034200	ENSHGLG00000035295	ENSHGLG00000047598	ENSHGLG00000005132	ENSHGLG00000004110	YIPF5 (ENSHGLG00000042369)	ENSHGLG00000042339	ENSHGLG00000006088	ENSHGLG00000042921	ENSHGLG00000034660	ENSHGLG00000035164
Rodentia_B	ANCESTRAL SPECIES	4	ENSGT00940000164848	ENSGT00940000164062.a	ENSGT00940000164062.b	ENSGT00940000164266	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00930000151774	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770
Kangaroo rat	MODERN SPECIES	369	Pcdhgb5 (ENSDORG00000028243)	Pcdhga10 (ENSDORG00000024528)	Pcdhgc3 (ENSDORG00000027782)	Pcdhgc5 (ENSDORG00000010243)	Pcdhgc4 (ENSDORG00000028491)	ENSDORG00000010244	ENSDORG00000012591	ENSDORG00000028995	ENSDORG00000025409	Arap3 (ENSDORG00000000511)	Pcdh1 (ENSDORG00000014608)	Dele1 (ENSDORG00000010853)	ENSDORG00000028559	Rnf14 (ENSDORG00000010856)	Gnpda1 (ENSDORG00000010857)	Ndfip1 (ENSDORG00000007475) ##22	Spry4 (ENSDORG00000023209) ##23	Fgf1 (ENSDORG00000024781)	Arhgap26 (ENSDORG00000003963)	ENSDORG00000024724	ENSDORG00000010001
Myomorpha	ANCESTRAL SPECIES	5	ENSGT00940000164062.b	ENSGT00940000163837.A	ENSGT00940000159725.k	ENSGT00940000164266	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00930000151774	ENSGT00940000153773.a.a.b.e.a	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880
Muroidea	ANCESTRAL SPECIES	4	ENSGT00940000164848	ENSGT00940000164062.a	ENSGT00940000164062.b	ENSGT00940000164266	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00930000151774	ENSGT00940000153773.a.a.b.e.a	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880
Muroidea_A	ANCESTRAL SPECIES	18	ENSGT00940000164848	ENSGT00940000164062.a	ENSGT00940000164062.b	ENSGT00940000164266	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153773.a.a.b.e.a	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770
Cricetidae	ANCESTRAL SPECIES	18	ENSGT00940000165737	ENSGT00940000164213	ENSGT00940000164848	ENSGT00940000164062.a	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153773.a.a.b.e.a	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770
Cricetidae_B	ANCESTRAL SPECIES	15	ENSGT00940000165737	ENSGT00940000164213	ENSGT00940000164848	ENSGT00940000164062.a	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153773.a.a.b.e.a	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	10	Pcdhb22 (ENSPEMG00000030552)	Slc25a2 (ENSPEMG00000025665)	Taf7 (ENSPEMG00000022877)	ENSPEMG00000030916	Pcdhgc5 (ENSPEMG00000000085)	Diaph1 (ENSPEMG00000020309)	Hdac3 (ENSPEMG00000023895)	Rell2 (ENSPEMG00000020331)	Fchsd1 (ENSPEMG00000022913)	Arap3 (ENSPEMG00000017354)	Pcdh1 (ENSPEMG00000023621)	Dele1 (ENSPEMG00000017454)	Pcdh12 (ENSPEMG00000021046)	Rnf14 (ENSPEMG00000020640)	Gnpda1 (ENSPEMG00000010722)	ENSPEMG00000022079 ##22	Spry4 (ENSPEMG00000028288) ##23	Fgf1 (ENSPEMG00000029130)	Arhgap26 (ENSPEMG00000030033)	Nr3c1 (ENSPEMG00000015909)	Pabpc2 (ENSPEMG00000013149)	Yipf5 (ENSPEMG00000025272)	Kctd16 (ENSPEMG00000017530)	Prelid2 (ENSPEMG00000016612)	Grxcr2 (ENSPEMG00000014234)	Sh3rf2 (ENSPEMG00000000187)	Plac8l1 (ENSPEMG00000016274)	Lars (ENSPEMG00000010933)	Rbm27 (ENSPEMG00000014312) ##21	Pou4f3 (ENSPEMG00000001569)	Tcerg1 (ENSPEMG00000005639)
Northern American deer mouse	MODERN SPECIES	14																ENSPEMG00000001081 ##22	Plpp2 (ENSPEMG00000013011)	Mier2 (ENSPEMG00000009798)	Theg (ENSPEMG00000010528)	C2cd4c (ENSPEMG00000010957)	Shc2 (ENSPEMG00000011244)	Odf3l2 (ENSPEMG00000010600)	Madcam1 (ENSPEMG00000014849)	Tpgs1 (ENSPEMG00000014191)	ENSPEMG00000006714	Gzmm (ENSPEMG00000013290)	ENSPEMG00000000384	Hcn2 (ENSPEMG00000009305)	Polrmt (ENSPEMG00000011671)	ENSPEMG00000005560	Rnf126 (ENSPEMG00000013948)
Prairie vole	MODERN SPECIES	5	Pcdhga10 (ENSMOCG00000001572)	Pcdhgb7 (ENSMOCG00000004679)	Pcdhga11 (ENSMOCG00000012320)	ENSMOCG00000018867	Pcdhgc4 (ENSMOCG00000014731)	ENSMOCG00000002570	Hdac3 (ENSMOCG00000000336)	ENSMOCG00000020427	Fchsd1 (ENSMOCG00000019543)	Arap3 (ENSMOCG00000016602)	Pcdh1 (ENSMOCG00000010075)	Dele1 (ENSMOCG00000018753)	Pcdh12 (ENSMOCG00000016834)	Rnf14 (ENSMOCG00000003358)	Gnpda1 (ENSMOCG00000004572)	Ndfip1 (ENSMOCG00000011242) ##22	Spry4 (ENSMOCG00000011998) ##23	Fgf1 (ENSMOCG00000018542)	Arhgap26 (ENSMOCG00000018682)	ENSMOCG00000013962	ENSMOCG00000020336	Pabpc2 (ENSMOCG00000001354)	ENSMOCG00000017913	Yipf5 (ENSMOCG00000019882)	Kctd16 (ENSMOCG00000000822)	ENSMOCG00000018520	Prelid2 (ENSMOCG00000016938)	Grxcr2 (ENSMOCG00000019868)	Sh3rf2 (ENSMOCG00000017019)	Plac8l1 (ENSMOCG00000006546)	Lars (ENSMOCG00000002092)
Cricetinae	ANCESTRAL SPECIES	14	ENSGT00940000164742	ENSGT00940000164488	ENSGT00940000164213	ENSGT00940000164848	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153773.a.a.b.e.a	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770
Chinese hamster chok1gshd	MODERN SPECIES	92	Pcdhgb1 (ENSCGRG00001000864)	Pcdhgb2 (ENSCGRG00001008251)	Pcdhga8 (ENSCGRG00001013599)	Pcdhgb7 (ENSCGRG00001009927)	Diaph1 (ENSCGRG00001022620)	Hdac3 (ENSCGRG00001010047)	Rell2 (ENSCGRG00001020596)	Fchsd1 (ENSCGRG00001023716)	Arap3 (ENSCGRG00001020709)	Pcdh1 (ENSCGRG00001019962)	ENSCGRG00001023147	Dele1 (ENSCGRG00001001000)	Pcdh12 (ENSCGRG00001016477)	Rnf14 (ENSCGRG00001021566)	Gnpda1 (ENSCGRG00001022546)	Ndfip1 (ENSCGRG00001005355) ##22	Spry4 (ENSCGRG00001006586) ##23	Fgf1 (ENSCGRG00001017683)	Arhgap26 (ENSCGRG00001014813)	ENSCGRG00001023620	Nr3c1 (ENSCGRG00001023458)	ENSCGRG00001000351	Yipf5 (ENSCGRG00001011656)	Kctd16 (ENSCGRG00001017823)	Prelid2 (ENSCGRG00001018946)	Grxcr2 (ENSCGRG00001003107)	Sh3rf2 (ENSCGRG00001015279)	Plac8l1 (ENSCGRG00001020122)	Lars (ENSCGRG00001004647)	Rbm27 (ENSCGRG00001018200) ##21	Pou4f3 (ENSCGRG00001020611)
Golden Hamster	MODERN SPECIES	634	Pcdhga7 (ENSMAUG00000018245)	Pcdhga8 (ENSMAUG00000008624)	Pcdhga10 (ENSMAUG00000000803)	Pcdhgb7 (ENSMAUG00000000546)	Pcdhgc5 (ENSMAUG00000019330)	ENSMAUG00000013628	Hdac3 (ENSMAUG00000011562)	Rell2 (ENSMAUG00000004682)	Fchsd1 (ENSMAUG00000004330)	Arap3 (ENSMAUG00000001406)	Pcdh1 (ENSMAUG00000019390)	Dele1 (ENSMAUG00000016596)	Pcdh12 (ENSMAUG00000016530)	Rnf14 (ENSMAUG00000014979)	Gnpda1 (ENSMAUG00000013980)	Ndfip1 (ENSMAUG00000013654) ##22	Spry4 (ENSMAUG00000013467) ##23	Fgf1 (ENSMAUG00000011876)	Arhgap26 (ENSMAUG00000003540)	ENSMAUG00000020019	Pabpc2 (ENSMAUG00000017991)	Yipf5 (ENSMAUG00000017919)	Kctd16 (ENSMAUG00000013733)	ENSMAUG00000013226	ENSMAUG00000012663	Prelid2 (ENSMAUG00000012304)	Grxcr2 (ENSMAUG00000011001)	Sh3rf2 (ENSMAUG00000010120)	Plac8l1 (ENSMAUG00000012870)	Lars (ENSMAUG00000003063)	Rbm27 (ENSMAUG00000007657) ##21
Murinae	ANCESTRAL SPECIES	17	ENSGT00940000164848	ENSGT00940000164062.a	ENSGT00940000164062.b	ENSGT00940000164266	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153773.a.a.b.e.a	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770
Rat	MODERN SPECIES	9	Pcdhb22 (ENSRNOG00000020028)	Taf7 (ENSRNOG00000020024)	Slc25a2 (ENSRNOG00000068493)	RGD1563159 (ENSRNOG00000042727)	Pcdhga5 (ENSRNOG00000063070)	Diaph1 (ENSRNOG00000019688)	Hdac3 (ENSRNOG00000019618)	Rell2 (ENSRNOG00000019575)	Fchsd1 (ENSRNOG00000039415)	Arap3 (ENSRNOG00000055527)	Pcdh1 (ENSRNOG00000060410)	Dele1 (ENSRNOG00000019276)	Pcdh12 (ENSRNOG00000019265)	Rnf14 (ENSRNOG00000045637)	Gnpda1 (ENSRNOG00000047213)	Ndfip1 (ENSRNOG00000013562) ##22	Spry4 (ENSRNOG00000013851) ##23	Fgf1 (ENSRNOG00000013867)	Arhgap26 (ENSRNOG00000013920)	Nr3c1 (ENSRNOG00000014096)	Pabpc2 (ENSRNOG00000014527)	Yipf5 (ENSRNOG00000014564)	Kctd16 (ENSRNOG00000069221)	ENSRNOG00000066807	Prelid2 (ENSRNOG00000067168)	Grxcr2 (ENSRNOG00000039325)	Sh3rf2 (ENSRNOG00000018780)	Plac8l1 (ENSRNOG00000018820)	Lars1 (ENSRNOG00000018304)	Rbm27 (ENSRNOG00000027250) ##21	Pou4f3 (ENSRNOG00000018842)
Mus	ANCESTRAL SPECIES	19	ENSGT00940000164848	ENSGT00940000164062.a	ENSGT00940000164062.b	ENSGT00940000164266	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153773.a.a.b.e.a	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770
Mus_A	ANCESTRAL SPECIES	19	ENSGT00940000164848	ENSGT00940000164062.a	ENSGT00940000164062.b	ENSGT00940000164266	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153773.a.a.b.e.a	ENSGT00940000153168.C.a.a	ENSGT00860000136040	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880
Ryukyu mouse	MODERN SPECIES	9	Pcdhga11 (MGP_CAROLIEiJ_G0022197)	Pcdhga12 (MGP_CAROLIEiJ_G0022198)	Pcdhgc3 (MGP_CAROLIEiJ_G0022199)	Pcdhgc4 (MGP_CAROLIEiJ_G0022200)	Pcdhgc5 (MGP_CAROLIEiJ_G0022201)	Diaph1 (MGP_CAROLIEiJ_G0022202)	Hdac3 (MGP_CAROLIEiJ_G0022203)	Rell2 (MGP_CAROLIEiJ_G0022204)	Fchsd1 (MGP_CAROLIEiJ_G0022205)	Arap3 (MGP_CAROLIEiJ_G0022206)	Pcdh1 (MGP_CAROLIEiJ_G0022207)	Dele1 (MGP_CAROLIEiJ_G0022208)	Pcdh12 (MGP_CAROLIEiJ_G0022209)	Rnf14 (MGP_CAROLIEiJ_G0022210)	Gnpda1 (MGP_CAROLIEiJ_G0022211)	Ndfip1 (MGP_CAROLIEiJ_G0022212) ##22	Spry4 (MGP_CAROLIEiJ_G0022213) ##23	Arhgap26 (MGP_CAROLIEiJ_G0022214)	Fgf1 (MGP_CAROLIEiJ_G0022215)	Nr3c1 (MGP_CAROLIEiJ_G0022216)	Pabpc2 (MGP_CAROLIEiJ_G0022217)	Yipf5 (MGP_CAROLIEiJ_G0022218)	MGP_CAROLIEiJ_G0022219	Kctd16 (MGP_CAROLIEiJ_G0022220)	Prelid2 (MGP_CAROLIEiJ_G0022221)	Grxcr2 (MGP_CAROLIEiJ_G0022222)	Sh3rf2 (MGP_CAROLIEiJ_G0022223)	Plac8l1 (MGP_CAROLIEiJ_G0022224)	Lars (MGP_CAROLIEiJ_G0022225)	Rbm27 (MGP_CAROLIEiJ_G0022226) ##21	Pou4f3 (MGP_CAROLIEiJ_G0022227)
Mus_B	ANCESTRAL SPECIES	19	ENSGT00940000164848	ENSGT00940000164062.a	ENSGT00940000164062.b	ENSGT00940000164266	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153773.a.a.b.e.a	ENSGT00940000153168.C.a.a	ENSGT00860000136040	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163.k	ENSGT00510000046929.b ##21	ENSGT00940000160880
Mouse	MODERN SPECIES	9	Pcdhgb8 (ENSMUSG00000103081)	Pcdhga12 (ENSMUSG00000102428)	Pcdhgc3 (ENSMUSG00000102918)	Pcdhgc4 (ENSMUSG00000023036)	Pcdhgc5 (ENSMUSG00000102543)	Diaph1 (ENSMUSG00000024456)	Hdac3 (ENSMUSG00000024454)	Rell2 (ENSMUSG00000044024)	Fchsd1 (ENSMUSG00000038524)	Arap3 (ENSMUSG00000024451)	Pcdh1 (ENSMUSG00000051375)	Dele1 (ENSMUSG00000024442)	Pcdh12 (ENSMUSG00000024440)	Rnf14 (ENSMUSG00000060450)	Gnpda1 (ENSMUSG00000052102)	Ndfip1 (ENSMUSG00000024425) ##22	Spry4 (ENSMUSG00000024427) ##23	Fgf1 (ENSMUSG00000036585)	Arhgap26 (ENSMUSG00000036452)	Nr3c1 (ENSMUSG00000024431)	Pabpc2 (ENSMUSG00000051732)	Yipf5 (ENSMUSG00000024487)	Kctd16 (ENSMUSG00000051401)	Prelid2 (ENSMUSG00000056671)	Grxcr2 (ENSMUSG00000073574)	Sh3rf2 (ENSMUSG00000057719)	Plac8l1 (ENSMUSG00000059455)	Lars (ENSMUSG00000024493)	Rbm27 (ENSMUSG00000024491) ##21	Pou4f3 (ENSMUSG00000024497)	Tcerg1 (ENSMUSG00000024498)
Mus_C	ANCESTRAL SPECIES	16	ENSGT00940000164848	ENSGT00940000164062.a	ENSGT00940000164062.b	ENSGT00940000164266	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153773.a.a.b.e.a	ENSGT00940000153168.C.a.a	ENSGT00860000136040	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163.k	ENSGT00510000046929.b ##21	ENSGT00940000160880
Steppe mouse	MODERN SPECIES	3388															ENSMSIG00000025483	Ndfip1 (ENSMSIG00000025489) ##22	Spry4 (ENSMSIG00000025510) ##23	Fgf1 (ENSMSIG00000025554)
spretus	MODERN SPECIES	9	Pcdhga11 (MGP_SPRETEiJ_G0023106)	Pcdhga12 (MGP_SPRETEiJ_G0023107)	Pcdhgc3 (MGP_SPRETEiJ_G0023108)	Pcdhgc4 (MGP_SPRETEiJ_G0023109)	Pcdhgc5 (MGP_SPRETEiJ_G0023110)	Diaph1 (MGP_SPRETEiJ_G0023111)	Hdac3 (MGP_SPRETEiJ_G0023112)	Rell2 (MGP_SPRETEiJ_G0023113)	Fchsd1 (MGP_SPRETEiJ_G0023114)	Arap3 (MGP_SPRETEiJ_G0023115)	Pcdh1 (MGP_SPRETEiJ_G0023116)	Dele1 (MGP_SPRETEiJ_G0023117)	Pcdh12 (MGP_SPRETEiJ_G0023118)	Rnf14 (MGP_SPRETEiJ_G0023119)	Gnpda1 (MGP_SPRETEiJ_G0023120)	Ndfip1 (MGP_SPRETEiJ_G0023121) ##22	Spry4 (MGP_SPRETEiJ_G0023122) ##23	Arhgap26 (MGP_SPRETEiJ_G0023123)	Fgf1 (MGP_SPRETEiJ_G0023124)	Nr3c1 (MGP_SPRETEiJ_G0023125)	Pabpc2 (MGP_SPRETEiJ_G0023126)	Yipf5 (MGP_SPRETEiJ_G0023127)	MGP_SPRETEiJ_G0023128	Kctd16 (MGP_SPRETEiJ_G0023129)	Prelid2 (MGP_SPRETEiJ_G0023130)	Grxcr2 (MGP_SPRETEiJ_G0023131)	Sh3rf2 (MGP_SPRETEiJ_G0023132)	MGP_SPRETEiJ_G0023133	Plac8l1 (MGP_SPRETEiJ_G0023134)	Lars (MGP_SPRETEiJ_G0023135)	Rbm27 (MGP_SPRETEiJ_G0023136) ##21
Shrew mouse	MODERN SPECIES	6	Pcdhga11 (MGP_PahariEiJ_G0018930)	Pcdhga12 (MGP_PahariEiJ_G0018931)	Pcdhgc3 (MGP_PahariEiJ_G0018932)	Pcdhgc4 (MGP_PahariEiJ_G0018933)	Pcdhgc5 (MGP_PahariEiJ_G0018934)	Diaph1 (MGP_PahariEiJ_G0018935)	Hdac3 (MGP_PahariEiJ_G0018936)	Rell2 (MGP_PahariEiJ_G0018937)	Fchsd1 (MGP_PahariEiJ_G0018938)	Arap3 (MGP_PahariEiJ_G0018939)	Pcdh1 (MGP_PahariEiJ_G0018940)	Dele1 (MGP_PahariEiJ_G0018941)	Pcdh12 (MGP_PahariEiJ_G0018942)	Rnf14 (MGP_PahariEiJ_G0018943)	Gnpda1 (MGP_PahariEiJ_G0018944)	Ndfip1 (MGP_PahariEiJ_G0018945) ##22	Spry4 (MGP_PahariEiJ_G0018946) ##23	Arhgap26 (MGP_PahariEiJ_G0018947)	Fgf1 (MGP_PahariEiJ_G0018948)	Nr3c1 (MGP_PahariEiJ_G0018949)	Pabpc2 (MGP_PahariEiJ_G0018950)	Yipf5 (MGP_PahariEiJ_G0018951)	MGP_PahariEiJ_G0018952	Kctd16 (MGP_PahariEiJ_G0018953)	Prelid2 (MGP_PahariEiJ_G0018954)	Grxcr2 (MGP_PahariEiJ_G0018955)	Sh3rf2 (MGP_PahariEiJ_G0018956)	Plac8l1 (MGP_PahariEiJ_G0018957)	Lars (MGP_PahariEiJ_G0018958)	Rbm27 (MGP_PahariEiJ_G0018959) ##21	Pou4f3 (MGP_PahariEiJ_G0018960)
Upper Galilee mountains blind mole rat	MODERN SPECIES	922	Pcdhga7 (ENSNGAG00000001146)	Pcdhgc4 (ENSNGAG00000007247)	Pcdhga11 (ENSNGAG00000011680)	Pcdhgc3 (ENSNGAG00000022970)	ENSNGAG00000004201	Hdac3 (ENSNGAG00000012179)	ENSNGAG00000018010	Fchsd1 (ENSNGAG00000019709)	Arap3 (ENSNGAG00000023362)	ENSNGAG00000014600	Pcdh1 (ENSNGAG00000015865)	Dele1 (ENSNGAG00000018387)	Pcdh12 (ENSNGAG00000010710)	Rnf14 (ENSNGAG00000011674)	ENSNGAG00000022512	Ndfip1 (ENSNGAG00000023008) ##22	Spry4 (ENSNGAG00000023023) ##23	ENSNGAG00000011614	Fgf1 (ENSNGAG00000023588)
Lesser Egyptian jerboa	MODERN SPECIES	113	Pcdhga11 (ENSJJAG00000002948)	Pcdhgb8 (ENSJJAG00000003467)	ENSJJAG00000009978	Pcdhgc3 (ENSJJAG00000014768)	Pcdhgc4 (ENSJJAG00000015107)	ENSJJAG00000015427	Hdac3 (ENSJJAG00000000176)	ENSJJAG00000000378	ENSJJAG00000008926	Arap3 (ENSJJAG00000013482)	Pcdh1 (ENSJJAG00000012873)	Dele1 (ENSJJAG00000014978)	Pcdh12 (ENSJJAG00000017286)	ENSJJAG00000018117	Gnpda1 (ENSJJAG00000021890)	Ndfip1 (ENSJJAG00000022196) ##22	Spry4 (ENSJJAG00000002860) ##23	Fgf1 (ENSJJAG00000015769)	Arhgap26 (ENSJJAG00000017919)	ENSJJAG00000023857	ENSJJAG00000023594	Pabpc2 (ENSJJAG00000014258)	Yipf5 (ENSJJAG00000003990)	ENSJJAG00000004118	Kctd16 (ENSJJAG00000010803)	Prelid2 (ENSJJAG00000013584)	ENSJJAG00000016937	Grxcr2 (ENSJJAG00000018009)	ENSJJAG00000019736	Sh3rf2 (ENSJJAG00000018919)	Plac8l1 (ENSJJAG00000023442)
Lagomorpha	ANCESTRAL SPECIES	3	ENSGT00940000165737	ENSGT00940000163837.A	ENSGT00940000163745	ENSGT00970000196845	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
Pika	MODERN SPECIES	4618			PCDHGA2 (ENSOPRG00000016905)	PCDHGA6 (ENSOPRG00000018504)	PCDHGC5 (ENSOPRG00000016910)	DIAPH1 (ENSOPRG00000016916)	HDAC3 (ENSOPRG00000016937)	RELL2 (ENSOPRG00000016945)	FCHSD1 (ENSOPRG00000016953)	ARAP3 (ENSOPRG00000016969)	ENSOPRG00000016989	DELE1 (ENSOPRG00000016999)	PCDH12 (ENSOPRG00000017011)	RNF14 (ENSOPRG00000017016)	GNPDA1 (ENSOPRG00000017022)	NDFIP1 (ENSOPRG00000017026) ##22
Rabbit	MODERN SPECIES	14	ENSOCUG00000038266	PCDHGB4 (ENSOCUG00000030131)	PCDHGB5 (ENSOCUG00000024576)	ENSOCUG00000027841	ENSOCUG00000031244	ENSOCUG00000030011	HDAC3 (ENSOCUG00000008961)	RELL2 (ENSOCUG00000025508)	FCHSD1 (ENSOCUG00000002098)	ARAP3 (ENSOCUG00000009340)	PCDH1 (ENSOCUG00000016923)	DELE1 (ENSOCUG00000016933)	PCDH12 (ENSOCUG00000016941)	RNF14 (ENSOCUG00000016953)	GNPDA1 (ENSOCUG00000016963)	NDFIP1 (ENSOCUG00000023595) ##22	SPRY4 (ENSOCUG00000003215) ##23	FGF1 (ENSOCUG00000013987)	ENSOCUG00000021770	ARHGAP26 (ENSOCUG00000011665)	NR3C1 (ENSOCUG00000011676)	YIPF5 (ENSOCUG00000028126)	KCTD16 (ENSOCUG00000011159)	ENSOCUG00000023960	ENSOCUG00000029156	GRXCR2 (ENSOCUG00000015661)	SH3RF2 (ENSOCUG00000015667)	PLAC8L1 (ENSOCUG00000015677)	LARS1 (ENSOCUG00000015684)	ENSOCUG00000033519	RBM27 (ENSOCUG00000000186) ##21
Primates	ANCESTRAL SPECIES	8	ENSGT00940000164848	ENSGT00940000164062.a	ENSGT00940000164062.b	ENSGT00940000164266	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00390000009781	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00910000146907	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880
Strepsirrhini	ANCESTRAL SPECIES	5	ENSGT00940000164742	ENSGT00940000164488	ENSGT00940000164213	ENSGT00940000164266	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B.m	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00390000009781	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770
Lemuriformes	ANCESTRAL SPECIES	21	ENSGT00940000160861	ENSGT01030000234870	ENSGT00940000156683.i	ENSGT00940000165392	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B.m	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000170092	ENSGT00390000009781	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880
Lemuriformes_a	ANCESTRAL SPECIES	13	ENSGT00940000160861	ENSGT01030000234870	ENSGT00940000156683.i	ENSGT00940000165392	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B.m	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000170092	ENSGT00390000009781	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880
Coquerels sifaka	MODERN SPECIES	339	PCDHB7 (ENSPCOG00000025281)	ENSPCOG00000015613	ENSPCOG00000026827	PCDHB15 (ENSPCOG00000018917)	PCDHGB2 (ENSPCOG00000018667)	DIAPH1 (ENSPCOG00000020269)	HDAC3 (ENSPCOG00000006048)	RELL2 (ENSPCOG00000018004)	FCHSD1 (ENSPCOG00000025414)	ARAP3 (ENSPCOG00000024418)	PCDH1 (ENSPCOG00000017633)	DELE1 (ENSPCOG00000017979)	PCDH12 (ENSPCOG00000013562)	RNF14 (ENSPCOG00000027762)	ENSPCOG00000020464	NDFIP1 (ENSPCOG00000017185) ##22	SPRY4 (ENSPCOG00000023808) ##23	FGF1 (ENSPCOG00000016781)	ARHGAP26 (ENSPCOG00000023541)	NR3C1 (ENSPCOG00000019178)	ENSPCOG00000018709	YIPF5 (ENSPCOG00000018721)	KCTD16 (ENSPCOG00000018703)
Greater bamboo lemur	MODERN SPECIES	284	PCDHGC5 (ENSPSMG00000021021)	ENSPSMG00000021051	ENSPSMG00000021054	PCDHGA9 (ENSPSMG00000021065)	ENSPSMG00000021068	DIAPH1 (ENSPSMG00000021307)	HDAC3 (ENSPSMG00000021427)	RELL2 (ENSPSMG00000021453)	FCHSD1 (ENSPSMG00000021563)	ARAP3 (ENSPSMG00000021735)	PCDH1 (ENSPSMG00000021806)	DELE1 (ENSPSMG00000021844)	PCDH12 (ENSPSMG00000021857)	RNF14 (ENSPSMG00000021874)	GNPDA1 (ENSPSMG00000021905)	NDFIP1 (ENSPSMG00000021922) ##22	SPRY4 (ENSPSMG00000021924) ##23	ENSPSMG00000021938	ENSPSMG00000021944	ARHGAP26 (ENSPSMG00000022100)	NR3C1 (ENSPSMG00000022184)
Mouse lemur	MODERN SPECIES	10	ENSMICG00000039388	PCDHB14 (ENSMICG00000035051)	PCDHGA4 (ENSMICG00000011479)	PCDHGA9 (ENSMICG00000047125)	DIAPH1 (ENSMICG00000011482)	HDAC3 (ENSMICG00000017449)	RELL2 (ENSMICG00000017450)	FCHSD1 (ENSMICG00000017451)	ARAP3 (ENSMICG00000017452)	PCDH1 (ENSMICG00000017453)	DELE1 (ENSMICG00000035655)	PCDH12 (ENSMICG00000000402)	RNF14 (ENSMICG00000000403)	GNPDA1 (ENSMICG00000029750)	ENSMICG00000046738	NDFIP1 (ENSMICG00000030011) ##22	SPRY4 (ENSMICG00000047702) ##23	ENSMICG00000047088	FGF1 (ENSMICG00000029580)	ENSMICG00000036985	ARHGAP26 (ENSMICG00000009460)	NR3C1 (ENSMICG00000009473)	ENSMICG00000046885	YIPF5 (ENSMICG00000033826)	KCTD16 (ENSMICG00000000382)	PRELID2 (ENSMICG00000003250)	ENSMICG00000033182	GRXCR2 (ENSMICG00000003256)	SH3RF2 (ENSMICG00000027571)	PLAC8L1 (ENSMICG00000041566)	ENSMICG00000035589
Bushbaby	MODERN SPECIES	118	PCDHGA7 (ENSOGAG00000034417)	PCDHGA8 (ENSOGAG00000027960)	PCDHGA10 (ENSOGAG00000025963)	PCDHGC3 (ENSOGAG00000027829)	PCDHGC5 (ENSOGAG00000000603)	DIAPH1 (ENSOGAG00000000604)	HDAC3 (ENSOGAG00000000605)	RELL2 (ENSOGAG00000000607)	FCHSD1 (ENSOGAG00000032557)	ARAP3 (ENSOGAG00000030775)	PCDH1 (ENSOGAG00000032935)	DELE1 (ENSOGAG00000003528)	PCDH12 (ENSOGAG00000029106)	RNF14 (ENSOGAG00000003535)	GNPDA1 (ENSOGAG00000007303)	NDFIP1 (ENSOGAG00000015910) ##22	SPRY4 (ENSOGAG00000005080) ##23	FGF1 (ENSOGAG00000005081)	ENSOGAG00000024728	ENSOGAG00000011397	NR3C1 (ENSOGAG00000003356)	ENSOGAG00000025196	YIPF5 (ENSOGAG00000001543)	ENSOGAG00000002243	KCTD16 (ENSOGAG00000001547)	PRELID2 (ENSOGAG00000010025)	GRXCR2 (ENSOGAG00000010027)	SH3RF2 (ENSOGAG00000010029)	LARS1 (ENSOGAG00000008750)	RBM27 (ENSOGAG00000008758) ##21	POU4F3 (ENSOGAG00000026756)
Haplorrhini	ANCESTRAL SPECIES	4	ENSGT00940000164848	ENSGT00940000164062.a	ENSGT00940000164062.b	ENSGT00940000164266	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00390000009781	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00910000146907	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880
Tarsier	MODERN SPECIES	6072					PCDHGC5 (ENSTSYG00000028163)	DIAPH1 (ENSTSYG00000002613)	HDAC3 (ENSTSYG00000008102)	RELL2 (ENSTSYG00000008165)	FCHSD1 (ENSTSYG00000029441)	ARAP3 (ENSTSYG00000012881)	PCDH1 (ENSTSYG00000028908)	KIAA0141 (ENSTSYG00000000885)	PCDH12 (ENSTSYG00000026259)	RNF14 (ENSTSYG00000002455)	GNPDA1 (ENSTSYG00000032103)	NDFIP1 (ENSTSYG00000006010) ##22	SPRY4 (ENSTSYG00000034788) ##23	MBNL3 (ENSTSYG00000014189)	RAP2C (ENSTSYG00000026223)	FRMD7 (ENSTSYG00000013880)	STK26 (ENSTSYG00000013875)	ENSTSYG00000037056	ENSTSYG00000035451
Simiiformes	ANCESTRAL SPECIES	6	ENSGT00940000164848	ENSGT00940000164062.a	ENSGT00940000164062.b	ENSGT00940000164266	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507.h	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00390000009781	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00910000146907	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880
Platyrrhini	ANCESTRAL SPECIES	7	ENSGT00940000163201.a.a	ENSGT00940000163362	ENSGT00940000162842	ENSGT00940000163424	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507.h	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00980000200893	ENSGT00940000154268.f.i.a.b	ENSGT00390000009781	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00910000146907	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163
Mas night monkey	MODERN SPECIES	966	PCDHGB5 (ENSANAG00000023766)	PCDHGA4 (ENSANAG00000033605)	DIAPH1 (ENSANAG00000033220)	HDAC3 (ENSANAG00000022422)	RELL2 (ENSANAG00000020895)	FCHSD1 (ENSANAG00000025327)	ARAP3 (ENSANAG00000023125)	PCDH1 (ENSANAG00000020835)	ENSANAG00000037296	DELE1 (ENSANAG00000025276)	PCDH12 (ENSANAG00000026229)	ENSANAG00000037813	ENSANAG00000021387	RNF14 (ENSANAG00000025736)	GNPDA1 (ENSANAG00000032432)	NDFIP1 (ENSANAG00000028423) ##22	ENSANAG00000024141	SPRY4 (ENSANAG00000029641) ##23	ENSANAG00000032884	ENSANAG00000037720	FGF1 (ENSANAG00000030014)	ENSANAG00000029175	NR3C1 (ENSANAG00000027316)	ENSANAG00000021549	ENSANAG00000020874	YIPF5 (ENSANAG00000036994)	KCTD16 (ENSANAG00000026211)	ENSANAG00000037716	PRELID2 (ENSANAG00000037895)	GRXCR2 (ENSANAG00000029301)	SH3RF2 (ENSANAG00000037988)
Cebidae	ANCESTRAL SPECIES	6	ENSGT00940000164011	ENSGT00940000163362	ENSGT00940000162842	ENSGT00940000160861	ENSGT00940000163745	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507.h	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00980000200893	ENSGT00940000154268.f.i.a.b	ENSGT00390000009781	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00910000146907	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163
Cebidae_a	ANCESTRAL SPECIES	3	ENSGT00940000163201.b	ENSGT00940000164011	ENSGT00940000163362	ENSGT00940000162842	ENSGT00940000163745	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507.h	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00390000009781	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00910000146907	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00530000063666.a.n	ENSGT00940000160864	ENSGT00940000159491	ENSGT00390000015384
Capuchin	DUPLICATION
Capuchin	DUPLICATION
Capuchin	DUPLICATION
Capuchin	MODERN SPECIES	1125																ENSCCAG00000031661 ##22
Capuchin	MODERN SPECIES	982																ENSCCAG00000031295 ##22
Capuchin	MODERN SPECIES	970																ENSCCAG00000032211 ##22	ENSCCAG00000027773	ENSCCAG00000028098	ENSCCAG00000017759	ENSCCAG00000023494
Capuchin	MODERN SPECIES	76	PCDHB7 (ENSCCAG00000022977)	PCDHB8 (ENSCCAG00000030006)	ENSCCAG00000031338	PCDHGA4 (ENSCCAG00000023813)	DIAPH1 (ENSCCAG00000023411)	ENSCCAG00000019961	HDAC3 (ENSCCAG00000023377)	RELL2 (ENSCCAG00000035587)	FCHSD1 (ENSCCAG00000033686)	ARAP3 (ENSCCAG00000025982)	PCDH1 (ENSCCAG00000026190)	DELE1 (ENSCCAG00000033469)	PCDH12 (ENSCCAG00000030443)	RNF14 (ENSCCAG00000034551)	GNPDA1 (ENSCCAG00000030002)	ENSCCAG00000036102 ##22	SPRY4 (ENSCCAG00000019276) ##23	FGF1 (ENSCCAG00000037765)	ARHGAP26 (ENSCCAG00000034898)	NR3C1 (ENSCCAG00000019143)	HMHB1 (ENSCCAG00000026580)	YIPF5 (ENSCCAG00000036325)	KCTD16 (ENSCCAG00000028072)	ENSCCAG00000026586	ENSCCAG00000031323	ENSCCAG00000019307	ENSCCAG00000030952	ENSCCAG00000010894	ENSCCAG00000000354	GRXCR2 (ENSCCAG00000031158)	SH3RF2 (ENSCCAG00000028560)
Bolivian squirrel monkey	MODERN SPECIES	43	PCDHB13 (ENSSBOG00000035838)	PCDHB14 (ENSSBOG00000036017)	PCDHB15 (ENSSBOG00000018980)	PCDHGC5 (ENSSBOG00000026061)	DIAPH1 (ENSSBOG00000026188)	HDAC3 (ENSSBOG00000024636)	RELL2 (ENSSBOG00000012587)	FCHSD1 (ENSSBOG00000026953)	ARAP3 (ENSSBOG00000022198)	PCDH1 (ENSSBOG00000035615)	DELE1 (ENSSBOG00000036078)	PCDH12 (ENSSBOG00000027240)	ENSSBOG00000020130	RNF14 (ENSSBOG00000032417)	GNPDA1 (ENSSBOG00000027619)	NDFIP1 (ENSSBOG00000034242) ##22	SPRY4 (ENSSBOG00000021373) ##23	FGF1 (ENSSBOG00000023066)	ARHGAP26 (ENSSBOG00000025886)	NR3C1 (ENSSBOG00000028631)	ENSSBOG00000031947	YIPF5 (ENSSBOG00000034858)	KCTD16 (ENSSBOG00000017670)	ENSSBOG00000023943	ENSSBOG00000033275	ENSSBOG00000017380	PRELID2 (ENSSBOG00000020144)	GRXCR2 (ENSSBOG00000021802)	SH3RF2 (ENSSBOG00000024803)	ENSSBOG00000029875	ENSSBOG00000029526
Marmoset	MODERN SPECIES	11	TAF7 (ENSCJAG00000047684)	SLC25A2 (ENSCJAG00000042244)	PCDHGA4 (ENSCJAG00000036751)	DIAPH1 (ENSCJAG00000017973)	HDAC3 (ENSCJAG00000018086)	RELL2 (ENSCJAG00000018091)	FCHSD1 (ENSCJAG00000018093)	ARAP3 (ENSCJAG00000018098)	ENSCJAG00000078233	PCDH1 (ENSCJAG00000018174)	DELE1 (ENSCJAG00000018193)	PCDH12 (ENSCJAG00000043015)	RNF14 (ENSCJAG00000018220)	GNPDA1 (ENSCJAG00000018247)	ENSCJAG00000012264	NDFIP1 (ENSCJAG00000018271) ##22	ENSCJAG00000062359	SPRY4 (ENSCJAG00000044286) ##23	ENSCJAG00000075128	ARHGAP26 (ENSCJAG00000018315)	ENSCJAG00000046005	NR3C1 (ENSCJAG00000018337)	ENSCJAG00000086268	ENSCJAG00000085779	ENSCJAG00000084331	ENSCJAG00000082836	YIPF5 (ENSCJAG00000021347)	KCTD16 (ENSCJAG00000021346)	ENSCJAG00000085996	ENSCJAG00000086865	ENSCJAG00000084165
Catarrhini	ANCESTRAL SPECIES	7	ENSGT00940000164848	ENSGT00940000164062.a	ENSGT00940000164062.b	ENSGT00940000164266	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507.h	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00910000148348	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00910000147098	ENSGT00390000009781	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00530000063666.a.m.b	ENSGT00940000160864	ENSGT00390000012163
Hominoidea	ANCESTRAL SPECIES	8	ENSGT00940000164062.a	ENSGT00940000164062.b	ENSGT00940000164266	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507.h	ENSGT00390000014316.c.b	ENSGT00940000167537	ENSGT00390000012721.a ##22	ENSGT00910000148348	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00910000147098	ENSGT00390000009781	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00390000004524.c.a.a.b.a.b	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00530000063666.a.m.b	ENSGT00940000160864
Hominidae	ANCESTRAL SPECIES	7	ENSGT00940000164062.a	ENSGT00940000164062.b	ENSGT00940000164266	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507.h	ENSGT00390000014316.c.b	ENSGT00940000167537	ENSGT00390000012721.a ##22	ENSGT00910000148348	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00910000147098	ENSGT00390000009781	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00390000004524.c.a.a.b.a.b	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00530000063666.a.m.b	ENSGT00940000160864
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	7	ENSGT00940000164062.b	ENSGT00940000164266	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000011666.x.b.k	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507.h	ENSGT00390000014316.c.b	ENSGT00940000167537	ENSGT00390000012721.a ##22	ENSGT00910000148348	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00910000147098	ENSGT00390000009781	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00390000004524.c.a.a.b.a.b	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00530000063666.a.m.b	ENSGT00940000160864
Gorilla	MODERN SPECIES	18	PCDHB12 (ENSGGOG00000008290)	PCDHB15 (ENSGGOG00000008308)	PCDHGA4 (ENSGGOG00000006956)	DIAPH1 (ENSGGOG00000002660)	HDAC3 (ENSGGOG00000016365)	RELL2 (ENSGGOG00000016383)	FCHSD1 (ENSGGOG00000016391)	ARAP3 (ENSGGOG00000016409)	PCDH1 (ENSGGOG00000000997)	ENSGGOG00000024734	DELE1 (ENSGGOG00000013008)	PCDH12 (ENSGGOG00000013017)	RNF14 (ENSGGOG00000008542)	GNPDA1 (ENSGGOG00000008969)	ENSGGOG00000042481	NDFIP1 (ENSGGOG00000004879) ##22	ENSGGOG00000040833	SPRY4 (ENSGGOG00000016991) ##23	FGF1 (ENSGGOG00000025578)	ARHGAP26 (ENSGGOG00000007019)	NR3C1 (ENSGGOG00000004334)	ENSGGOG00000041404	HMHB1 (ENSGGOG00000007079)	YIPF5 (ENSGGOG00000006295)	KCTD16 (ENSGGOG00000012018)	GRXCR2 (ENSGGOG00000013882)	SH3RF2 (ENSGGOG00000008250)	ENSGGOG00000043036	PLAC8L1 (ENSGGOG00000008260)	LARS1 (ENSGGOG00000004103)	RBM27 (ENSGGOG00000013312) ##21
Homo/Pan group	ANCESTRAL SPECIES	8	ENSGT00940000164062.b	ENSGT00940000164266	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000011666.x.b.k	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507.h	ENSGT00390000014316.c.b	ENSGT00940000167537	ENSGT00390000012721.a ##22	ENSGT00910000148348	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00910000147098	ENSGT00390000009781	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00390000004524.c.a.a.b.a.b	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00530000063666.a.m.b	ENSGT00940000160864
Pan	ANCESTRAL SPECIES	10	ENSGT00940000164742	ENSGT00940000163745	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000011666.x.b.k	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507.h	ENSGT00390000014316.c.b	ENSGT00940000167537	ENSGT00390000012721.a ##22	ENSGT00910000148348	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00910000147098	ENSGT00390000009781	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00390000004524.c.a.a.b.a.b	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00530000063666.a.m.b	ENSGT00940000160864
Bonobo	MODERN SPECIES	18	PCDHGA11 (ENSPPAG00000039602)	ENSPPAG00000042272	ENSPPAG00000029562	HDAC3 (ENSPPAG00000037408)	RELL2 (ENSPPAG00000012297)	ENSPPAG00000040690	ARAP3 (ENSPPAG00000038396)	PCDH1 (ENSPPAG00000042443)	ENSPPAG00000028850	DELE1 (ENSPPAG00000043018)	PCDH12 (ENSPPAG00000043492)	RNF14 (ENSPPAG00000027838)	GNPDA1 (ENSPPAG00000036920)	ENSPPAG00000041886	ENSPPAG00000024231	NDFIP1 (ENSPPAG00000026599) ##22	SPRY4 (ENSPPAG00000037403) ##23	FGF1 (ENSPPAG00000040850)	ARHGAP26 (ENSPPAG00000023917)	NR3C1 (ENSPPAG00000039198)	ENSPPAG00000038465	YIPF5 (ENSPPAG00000041251)	KCTD16 (ENSPPAG00000039008)	ENSPPAG00000043741	PRELID2 (ENSPPAG00000030896)	GRXCR2 (ENSPPAG00000020105)	SH3RF2 (ENSPPAG00000042408)	ENSPPAG00000013764	PLAC8L1 (ENSPPAG00000036320)	LARS1 (ENSPPAG00000027964)	RBM27 (ENSPPAG00000039646) ##21
Chimpanzee	MODERN SPECIES	18	PCDHB15 (ENSPTRG00000017343)	PCDHGA1 (ENSPTRG00000043323)	PCDHGA4 (ENSPTRG00000017346)	DIAPH1 (ENSPTRG00000045831)	HDAC3 (ENSPTRG00000017348)	RELL2 (ENSPTRG00000017349)	FCHSD1 (ENSPTRG00000023689)	ARAP3 (ENSPTRG00000017351)	PCDH1 (ENSPTRG00000040496)	ENSPTRG00000039515	DELE1 (ENSPTRG00000017354)	PCDH12 (ENSPTRG00000017355)	RNF14 (ENSPTRG00000017356)	GNPDA1 (ENSPTRG00000017357)	ENSPTRG00000044712	NDFIP1 (ENSPTRG00000017358) ##22	ENSPTRG00000051537	SPRY4 (ENSPTRG00000017360) ##23	FGF1 (ENSPTRG00000017361)	ARHGAP26 (ENSPTRG00000017362)	NR3C1 (ENSPTRG00000017363)	ENSPTRG00000049901	HMHB1 (ENSPTRG00000048752)	YIPF5 (ENSPTRG00000017365)	KCTD16 (ENSPTRG00000017366)	PRELID2 (ENSPTRG00000017368)	GRXCR2 (ENSPTRG00000028540)	SH3RF2 (ENSPTRG00000017369)	ENSPTRG00000049462	PLAC8L1 (ENSPTRG00000017370)	LARS1 (ENSPTRG00000017372)
Human	MODERN SPECIES	17	PCDHGA11 (ENSG00000253873)	PCDHGA12 (ENSG00000253159)	PCDHGC3 (ENSG00000240184)	PCDHGC4 (ENSG00000242419)	PCDHGC5 (ENSG00000240764)	DIAPH1 (ENSG00000131504)	HDAC3 (ENSG00000171720)	RELL2 (ENSG00000164620)	FCHSD1 (ENSG00000197948)	ARAP3 (ENSG00000120318)	PCDH1 (ENSG00000156453)	DELE1 (ENSG00000081791)	PCDH12 (ENSG00000113555)	RNF14 (ENSG00000013561)	GNPDA1 (ENSG00000113552)	NDFIP1 (ENSG00000131507) ##22	SPRY4 (ENSG00000187678) ##23	FGF1 (ENSG00000113578)	ARHGAP26 (ENSG00000145819)	NR3C1 (ENSG00000113580)	HMHB1 (ENSG00000158497)	YIPF5 (ENSG00000145817)	KCTD16 (ENSG00000183775)	PRELID2 (ENSG00000186314)	GRXCR2 (ENSG00000204928)	SH3RF2 (ENSG00000156463)	PLAC8L1 (ENSG00000173261)	LARS1 (ENSG00000133706)	ENSG00000275740	RBM27 (ENSG00000091009) ##21	POU4F3 (ENSG00000091010)
Orangutan	MODERN SPECIES	18	ENSPPYG00000015882	PCDHB15 (ENSPPYG00000040232)	SLC25A2 (ENSPPYG00000015884)	TAF7 (ENSPPYG00000015885)	PCDHGC5 (ENSPPYG00000015887)	DIAPH1 (ENSPPYG00000015888)	HDAC3 (ENSPPYG00000015889)	RELL2 (ENSPPYG00000015890)	FCHSD1 (ENSPPYG00000015891)	ARAP3 (ENSPPYG00000029924)	PCDH1 (ENSPPYG00000029866)	DELE1 (ENSPPYG00000015892)	PCDH12 (ENSPPYG00000015893)	RNF14 (ENSPPYG00000015894)	GNPDA1 (ENSPPYG00000015895)	NDFIP1 (ENSPPYG00000015896) ##22	ENSPPYG00000037313	SPRY4 (ENSPPYG00000015897) ##23	FGF1 (ENSPPYG00000015898)	ARHGAP26 (ENSPPYG00000015899)	NR3C1 (ENSPPYG00000015900)	HMHB1 (ENSPPYG00000015901)	YIPF5 (ENSPPYG00000038760)	KCTD16 (ENSPPYG00000015903)	PRELID2 (ENSPPYG00000034671)	GRXCR2 (ENSPPYG00000015905)	SH3RF2 (ENSPPYG00000015906)	LARS1 (ENSPPYG00000015908)	RBM27 (ENSPPYG00000015909) ##21	ENSPPYG00000030925	POU4F3 (ENSPPYG00000015910)
Gibbon	MODERN SPECIES	11	PCDHGB4 (ENSNLEG00000035062)	ENSNLEG00000029769	ENSNLEG00000033853	PCDHGA4 (ENSNLEG00000009504)	DIAPH1 (ENSNLEG00000009546)	HDAC3 (ENSNLEG00000009594)	RELL2 (ENSNLEG00000009626)	FCHSD1 (ENSNLEG00000009642)	ARAP3 (ENSNLEG00000009656)	PCDH1 (ENSNLEG00000009682)	DELE1 (ENSNLEG00000009687)	PCDH12 (ENSNLEG00000009706)	RNF14 (ENSNLEG00000009711)	GNPDA1 (ENSNLEG00000032180)	ENSNLEG00000029435	NDFIP1 (ENSNLEG00000009739) ##22	SPRY4 (ENSNLEG00000009744) ##23	FGF1 (ENSNLEG00000009747)	ENSNLEG00000009755	NR3C1 (ENSNLEG00000009765)	ENSNLEG00000036034	ENSNLEG00000030931	HMHB1 (ENSNLEG00000027190)	YIPF5 (ENSNLEG00000009786)	KCTD16 (ENSNLEG00000033715)	ENSNLEG00000034701	PRELID2 (ENSNLEG00000034550)	GRXCR2 (ENSNLEG00000009806)	SH3RF2 (ENSNLEG00000009812)	PLAC8L1 (ENSNLEG00000009813)	LARS1 (ENSNLEG00000009816)
Cercopithecidae	ANCESTRAL SPECIES	5	ENSGT00940000156683.j	ENSGT00940000164488	ENSGT00940000156683.i	ENSGT01030000234870	ENSGT00940000163745	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507.h	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00910000148348	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00960000187994	ENSGT00910000147098	ENSGT00390000009781	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00530000063666.a.n	ENSGT00940000160067	ENSGT00530000063666.a.m.b
Rhinopithecus	ANCESTRAL SPECIES	17	ENSGT00940000156683.j	ENSGT00940000165737	ENSGT00940000164213	ENSGT00940000159725.k	ENSGT00940000163745	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507.h	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00390000009724.l.u.b.d.a	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00960000187994	ENSGT00910000147098	ENSGT00390000009781	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00910000146907
Golden snub-nosed monkey	MODERN SPECIES	2661	PCDHB14 (ENSRROG00000003674)	PCDHB15 (ENSRROG00000026845)	ENSRROG00000016468	PCDHGA4 (ENSRROG00000031416)	PCDHGB3 (ENSRROG00000041977)	DIAPH1 (ENSRROG00000036504)	HDAC3 (ENSRROG00000026471)	RELL2 (ENSRROG00000031324)	FCHSD1 (ENSRROG00000041211)	ARAP3 (ENSRROG00000038877)	PCDH1 (ENSRROG00000038599)	DELE1 (ENSRROG00000042641)	PCDH12 (ENSRROG00000040813)	RNF14 (ENSRROG00000030177)	GNPDA1 (ENSRROG00000038746)	NDFIP1 (ENSRROG00000041565) ##22	ENSRROG00000004036	SPRY4 (ENSRROG00000016713) ##23	FGF1 (ENSRROG00000033758)	ARHGAP26 (ENSRROG00000042964)	NR3C1 (ENSRROG00000028481)	ENSRROG00000040452	ENSRROG00000018303	HMHB1 (ENSRROG00000043817)	YIPF5 (ENSRROG00000020375)	KCTD16 (ENSRROG00000044265)
Black snub-nosed monkey	MODERN SPECIES	438	PCDHGA7 (ENSRBIG00000030900)	PCDHGB4 (ENSRBIG00000028474)	PCDHGB6 (ENSRBIG00000037666)	PCDHGA10 (ENSRBIG00000034534)	ENSRBIG00000032314	DIAPH1 (ENSRBIG00000041077)	HDAC3 (ENSRBIG00000040336)	RELL2 (ENSRBIG00000025892)	FCHSD1 (ENSRBIG00000027201)	ARAP3 (ENSRBIG00000044040)	PCDH1 (ENSRBIG00000027936)	DELE1 (ENSRBIG00000032149)	PCDH12 (ENSRBIG00000036991)	RNF14 (ENSRBIG00000032154)	GNPDA1 (ENSRBIG00000027907)	NDFIP1 (ENSRBIG00000031783) ##22	ENSRBIG00000001550	SPRY4 (ENSRBIG00000042786) ##23	FGF1 (ENSRBIG00000028697)	ENSRBIG00000032965	NR3C1 (ENSRBIG00000026391)	ENSRBIG00000029184	ENSRBIG00000027656	HMHB1 (ENSRBIG00000035788)
Cercopithecinae	ANCESTRAL SPECIES	9	ENSGT00940000164471	ENSGT00940000156683.j	ENSGT00940000164488	ENSGT00940000156683.i	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507.h	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00910000148348	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00960000187994	ENSGT00910000147098	ENSGT00390000009781	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00530000063666.a.n	ENSGT00940000160067	ENSGT00940000160864
Vervet Monkey	MODERN SPECIES	15	SLC25A2 (ENSCSAG00000000485)	TAF7 (ENSCSAG00000000484)	PCDHGA1 (ENSCSAG00000012500)	PCDHGB7 (ENSCSAG00000012497)	DIAPH1 (ENSCSAG00000012491)	ENSCSAG00000012474	RELL2 (ENSCSAG00000012463)	FCHSD1 (ENSCSAG00000012453)	ARAP3 (ENSCSAG00000012438)	ENSCSAG00000000483	PCDH1 (ENSCSAG00000012421)	DELE1 (ENSCSAG00000012414)	PCDH12 (ENSCSAG00000012406)	RNF14 (ENSCSAG00000012400)	GNPDA1 (ENSCSAG00000012395)	NDFIP1 (ENSCSAG00000012390) ##22	SPRY4 (ENSCSAG00000012384) ##23	FGF1 (ENSCSAG00000012382)	ARHGAP26 (ENSCSAG00000012374)	NR3C1 (ENSCSAG00000012355)	ENSCSAG00000012347	HMHB1 (ENSCSAG00000012344)	YIPF5 (ENSCSAG00000012338)	KCTD16 (ENSCSAG00000000482)	PRELID2 (ENSCSAG00000012305)	GRXCR2 (ENSCSAG00000012295)	SH3RF2 (ENSCSAG00000012292)	PLAC8L1 (ENSCSAG00000012285)	LARS1 (ENSCSAG00000012280)	ENSCSAG00000019715	RBM27 (ENSCSAG00000012270) ##21
Cercopithecinae_a	ANCESTRAL SPECIES	9	ENSGT00940000164471	ENSGT00940000156683.j	ENSGT00940000164488	ENSGT00940000156683.i	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507.h	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00910000148348	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00910000147553	ENSGT00940000156385	ENSGT00960000187994	ENSGT00910000147098	ENSGT00390000009781	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00530000063666.a.n	ENSGT00940000160067
Cercopithecinae_b	ANCESTRAL SPECIES	4	ENSGT00940000164906	ENSGT00940000163837.B	ENSGT01030000234870	ENSGT00940000163745	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507.h	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00910000148348	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00910000147553	ENSGT00940000156385	ENSGT00960000187994	ENSGT00910000147098	ENSGT00390000009781	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00910000146907	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067
Cercopithecinae_d	ANCESTRAL SPECIES	18	ENSGT00940000164906	ENSGT00940000163837.B	ENSGT01030000234870	ENSGT00940000163745	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507.h	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00910000147553	ENSGT00940000156385	ENSGT00960000187994	ENSGT00910000147098	ENSGT00390000009781	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00910000146907	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864
Drill	MODERN SPECIES	1127																NDFIP1 (ENSMLEG00000029860) ##22	SPRY4 (ENSMLEG00000039395) ##23	FGF1 (ENSMLEG00000006443)	ARHGAP26 (ENSMLEG00000028231)	ENSMLEG00000044458	NR3C1 (ENSMLEG00000032761)	ENSMLEG00000028169	HMHB1 (ENSMLEG00000036049)	YIPF5 (ENSMLEG00000025191)	KCTD16 (ENSMLEG00000044171)	ENSMLEG00000018907
Sooty mangabey	MODERN SPECIES	309	ENSCATG00000041883	ENSCATG00000031584	PCDHB14 (ENSCATG00000002956)	PCDHGA4 (ENSCATG00000043500)	ENSCATG00000020733	DIAPH1 (ENSCATG00000035236)	HDAC3 (ENSCATG00000017981)	RELL2 (ENSCATG00000023656)	FCHSD1 (ENSCATG00000044488)	ARAP3 (ENSCATG00000042323)	PCDH1 (ENSCATG00000034071)	DELE1 (ENSCATG00000017255)	PCDH12 (ENSCATG00000038804)	RNF14 (ENSCATG00000001829)	GNPDA1 (ENSCATG00000031183)	NDFIP1 (ENSCATG00000033133) ##22	SPRY4 (ENSCATG00000034033) ##23	FGF1 (ENSCATG00000032292)	ARHGAP26 (ENSCATG00000034757)	ENSCATG00000043869	NR3C1 (ENSCATG00000041497)	ENSCATG00000030336	ENSCATG00000021589	HMHB1 (ENSCATG00000042712)	YIPF5 (ENSCATG00000044741)	KCTD16 (ENSCATG00000042995)	ENSCATG00000022370	ENSCATG00000022183	PRELID2 (ENSCATG00000032890)	ENSCATG00000030405	SH3RF2 (ENSCATG00000031515)
Olive baboon	MODERN SPECIES	15	TAF7 (ENSPANG00000000647)	PCDHGA2 (ENSPANG00000037083)	PCDHGA4 (ENSPANG00000029408)	DIAPH1 (ENSPANG00000014874)	HDAC3 (ENSPANG00000007093)	RELL2 (ENSPANG00000012116)	FCHSD1 (ENSPANG00000012206)	ARAP3 (ENSPANG00000024671)	PCDH1 (ENSPANG00000009429)	DELE1 (ENSPANG00000002756)	PCDH12 (ENSPANG00000006995)	RNF14 (ENSPANG00000012016)	GNPDA1 (ENSPANG00000014429)	ENSPANG00000044275	ENSPANG00000046300	NDFIP1 (ENSPANG00000006032) ##22	ENSPANG00000049145	SPRY4 (ENSPANG00000003368) ##23	FGF1 (ENSPANG00000000312)	ARHGAP26 (ENSPANG00000000313)	NR3C1 (ENSPANG00000003021)	ENSPANG00000049004	HMHB1 (ENSPANG00000029402)	YIPF5 (ENSPANG00000009344)	KCTD16 (ENSPANG00000010407)	ENSPANG00000041262	PRELID2 (ENSPANG00000008877)	SH3RF2 (ENSPANG00000007890)	LARS1 (ENSPANG00000002663)	RBM27 (ENSPANG00000015776) ##21	POU4F3 (ENSPANG00000048660)
Macaca	ANCESTRAL SPECIES	7	ENSGT00940000160861	ENSGT01030000234870	ENSGT00940000164488	ENSGT00940000156683.i	ENSGT00940000163745	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507.h	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00910000148348	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00910000147553	ENSGT00940000156385	ENSGT00910000147098	ENSGT00390000009781	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00530000063666.a.n	ENSGT00940000160067	ENSGT00940000160864
Pig-tailed macaque	MODERN SPECIES	383	ENSMNEG00000040142	PCDHB14 (ENSMNEG00000026635)	ENSMNEG00000026891	PCDHGA10 (ENSMNEG00000031767)	PCDHGA4 (ENSMNEG00000029363)	DIAPH1 (ENSMNEG00000034458)	HDAC3 (ENSMNEG00000030557)	RELL2 (ENSMNEG00000031835)	FCHSD1 (ENSMNEG00000042045)	ARAP3 (ENSMNEG00000039626)	PCDH1 (ENSMNEG00000030768)	DELE1 (ENSMNEG00000000602)	PCDH12 (ENSMNEG00000036632)	RNF14 (ENSMNEG00000041094)	GNPDA1 (ENSMNEG00000039381)	NDFIP1 (ENSMNEG00000039206) ##22	SPRY4 (ENSMNEG00000035869) ##23	FGF1 (ENSMNEG00000032265)	ARHGAP26 (ENSMNEG00000040205)	ENSMNEG00000029836	NR3C1 (ENSMNEG00000033020)	ENSMNEG00000001356	HMHB1 (ENSMNEG00000028636)	YIPF5 (ENSMNEG00000039921)	KCTD16 (ENSMNEG00000039497)	ENSMNEG00000011852	ENSMNEG00000038711	PRELID2 (ENSMNEG00000035321)	GRXCR2 (ENSMNEG00000040216)	ENSMNEG00000031297	SH3RF2 (ENSMNEG00000015276)
Macaca_a	ANCESTRAL SPECIES	8	ENSGT00940000163424	ENSGT00940000160861	ENSGT01030000234870	ENSGT00940000164488	ENSGT00940000156683.i	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507.h	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00910000148348	ENSGT00950000183055.b.b ##23	ENSGT00940000161627.a.a.a.a.b.a.a.b.a.a.a.a.a.b.b.a.a	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00910000147098	ENSGT00390000009781	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163
Rhesus	MODERN SPECIES	16	PCDHB15 (ENSMMUG00000021941)	SLC25A2 (ENSMMUG00000021943)	TAF7 (ENSMMUG00000057240)	PCDHGB5 (ENSMMUG00000021963)	ENSMMUG00000052308	DIAPH1 (ENSMMUG00000021964)	HDAC3 (ENSMMUG00000012588)	RELL2 (ENSMMUG00000012591)	FCHSD1 (ENSMMUG00000012593)	ARAP3 (ENSMMUG00000000465)	PCDH1 (ENSMMUG00000008710)	DELE1 (ENSMMUG00000006287)	PCDH12 (ENSMMUG00000006291)	RNF14 (ENSMMUG00000009768)	GNPDA1 (ENSMMUG00000009770)	NDFIP1 (ENSMMUG00000016787) ##22	ENSMMUG00000059206	SPRY4 (ENSMMUG00000014175) ##23	ENSMMUG00000060402	FGF1 (ENSMMUG00000057828)	ARHGAP26 (ENSMMUG00000000419)	NR3C1 (ENSMMUG00000000421)	HMHB1 (ENSMMUG00000046781)	YIPF5 (ENSMMUG00000020763)	KCTD16 (ENSMMUG00000029791)	ENSMMUG00000059831	PRELID2 (ENSMMUG00000013588)	GRXCR2 (ENSMMUG00000049310)	SH3RF2 (ENSMMUG00000018386)	PLAC8L1 (ENSMMUG00000006551)	LARS1 (ENSMMUG00000029787)
Crab-eating macaque	MODERN SPECIES	16	SLC25A2 (ENSMFAG00000027395)	TAF7 (ENSMFAG00000032998)	ENSMFAG00000033704	ENSMFAG00000022639	PCDHGA10 (ENSMFAG00000057255)	DIAPH1 (ENSMFAG00000042488)	HDAC3 (ENSMFAG00000002489)	RELL2 (ENSMFAG00000033304)	FCHSD1 (ENSMFAG00000033954)	ARAP3 (ENSMFAG00000002504)	PCDH1 (ENSMFAG00000035695)	DELE1 (ENSMFAG00000040008)	PCDH12 (ENSMFAG00000036923)	RNF14 (ENSMFAG00000039262)	GNPDA1 (ENSMFAG00000032994)	NDFIP1 (ENSMFAG00000039431) ##22	ENSMFAG00000058025	SPRY4 (ENSMFAG00000033414) ##23	ENSMFAG00000052119	ENSMFAG00000031417	ENSMFAG00000049353	ARHGAP26 (ENSMFAG00000002069)	NR3C1 (ENSMFAG00000039004)	ENSMFAG00000053370	ENSMFAG00000056491	ENSMFAG00000056016	ENSMFAG00000049129	ENSMFAG00000055681	HMHB1 (ENSMFAG00000004056)	YIPF5 (ENSMFAG00000001553)	KCTD16 (ENSMFAG00000031599)
Laurasiatheria	ANCESTRAL SPECIES	8	ENSGT00940000156683.j	ENSGT00940000164488	ENSGT00940000156683.i	ENSGT00940000159725.k	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00390000009781	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00910000146907	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880
Laurasiatheria_a	ANCESTRAL SPECIES	9	ENSGT01030000234870	ENSGT00940000163837.A	ENSGT00940000163837.B	ENSGT00940000163745	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT01050000246758	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00390000009781	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00910000146907	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880
Artiodactyla	ANCESTRAL SPECIES	8	ENSGT00940000160861	ENSGT01030000234870	ENSGT00940000163837.A	ENSGT00940000163745	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT01050000246758	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00910000146907	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770
Suina	ANCESTRAL SPECIES	11	ENSGT00940000162232	ENSGT00970000196845	ENSGT00940000165737	ENSGT00940000163837.A	ENSGT00940000163745	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
Chacoan peccary	MODERN SPECIES	912											PCDH1 (ENSCWAG00000011035)	DELE1 (ENSCWAG00000011103)	PCDH12 (ENSCWAG00000011178)	RNF14 (ENSCWAG00000011240)	GNPDA1 (ENSCWAG00000011351)	NDFIP1 (ENSCWAG00000011396) ##22	SPRY4 (ENSCWAG00000011439) ##23	ENSCWAG00000011494	ARHGAP26 (ENSCWAG00000011556)	NR3C1 (ENSCWAG00000012233)	YIPF5 (ENSCWAG00000012427)	KCTD16 (ENSCWAG00000012472)	PRELID2 (ENSCWAG00000012498)	GRXCR2 (ENSCWAG00000012555)	SH3RF2 (ENSCWAG00000012617)	PLAC8L1 (ENSCWAG00000012716)	LARS1 (ENSCWAG00000012774)	RBM27 (ENSCWAG00000012931) ##21	POU4F3 (ENSCWAG00000013008)	TCERG1 (ENSCWAG00000013060)	GPR151 (ENSCWAG00000013225)
Pig	MODERN SPECIES	10	PCDHGB1 (ENSSSCG00000025141)	PCDHGA4 (ENSSSCG00000027371)	PCDHGA6 (ENSSSCG00000046808)	ENSSSCG00000031533	ENSSSCG00000044449	DIAPH1 (ENSSSCG00000014387)	HDAC3 (ENSSSCG00000014388)	RELL2 (ENSSSCG00000014389)	FCHSD1 (ENSSSCG00000014390)	ARAP3 (ENSSSCG00000014391)	PCDH1 (ENSSSCG00000022289)	DELE1 (ENSSSCG00000014396)	PCDH12 (ENSSSCG00000014395)	RNF14 (ENSSSCG00000014394)	GNPDA1 (ENSSSCG00000038940)	NDFIP1 (ENSSSCG00000025295) ##22	SPRY4 (ENSSSCG00000036322) ##23	FGF1 (ENSSSCG00000024954)	ARHGAP26 (ENSSSCG00000014399)	ENSSSCG00000056350	NR3C1 (ENSSSCG00000014401)	YIPF5 (ENSSSCG00000039309)	KCTD16 (ENSSSCG00000032826)	ENSSSCG00000043236	ENSSSCG00000056548	PRELID2 (ENSSSCG00000014406)	ENSSSCG00000041978	GRXCR2 (ENSSSCG00000040306)	SH3RF2 (ENSSSCG00000014410)	PLAC8L1 (ENSSSCG00000014408)	LARS1 (ENSSSCG00000014411)
Artiodactyla_a	ANCESTRAL SPECIES	7	ENSGT00940000160861	ENSGT01030000234870	ENSGT00940000163837.A	ENSGT00940000163745	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT01050000246758	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00910000146907	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770
Camelidae	ANCESTRAL SPECIES	1	ENSGT00940000160861	ENSGT01030000234870	ENSGT00940000164742	ENSGT00940000164062	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00910000146907	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770
Arabian camel	MODERN SPECIES	22	SLC25A2 (ENSCDRG00005011728)	TAF7 (ENSCDRG00005011710)	ENSCDRG00005011680	ENSCDRG00005011653	ENSCDRG00005011028	DIAPH1 (ENSCDRG00005009384)	HDAC3 (ENSCDRG00005009144)	RELL2 (ENSCDRG00005008821)	FCHSD1 (ENSCDRG00005008705)	ARAP3 (ENSCDRG00005008232)	PCDH1 (ENSCDRG00005008093)	DELE1 (ENSCDRG00005007964)	PCDH12 (ENSCDRG00005007932)	RNF14 (ENSCDRG00005007888)	GNPDA1 (ENSCDRG00005007768)	NDFIP1 (ENSCDRG00005007731) ##22	SPRY4 (ENSCDRG00005007704) ##23	FGF1 (ENSCDRG00005007630)	ARHGAP26 (ENSCDRG00005007379)	NR3C1 (ENSCDRG00005007211)	YIPF5 (ENSCDRG00005007163)	KCTD16 (ENSCDRG00005007114)	ENSCDRG00005007104	PRELID2 (ENSCDRG00005007015)	GRXCR2 (ENSCDRG00005006943)	SH3RF2 (ENSCDRG00005006810)	PLAC8L1 (ENSCDRG00005006765)	LARS1 (ENSCDRG00005006632)	RBM27 (ENSCDRG00005006505) ##21	POU4F3 (ENSCDRG00005006464)	TCERG1 (ENSCDRG00005006238)
Alpaca	MODERN SPECIES	3417														RNF14 (ENSVPAG00000002961)	GNPDA1 (ENSVPAG00000002962)	NDFIP1 (ENSVPAG00000002963) ##22
Artiodactyla_b	ANCESTRAL SPECIES	8	ENSGT00940000164062	ENSGT00940000164266	ENSGT00940000162232	ENSGT00970000196845	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT01050000246758	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
Pecora	ANCESTRAL SPECIES		ENSGT00940000164213	ENSGT00940000164848	ENSGT00940000164062	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT01050000246758	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
Percora_a	ANCESTRAL SPECIES		ENSGT00940000164213	ENSGT00940000164848	ENSGT00940000164062	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT01050000246758	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
Bovidae	ANCESTRAL SPECIES		ENSGT00940000165737	ENSGT00940000164213	ENSGT00940000164848	ENSGT00940000164062	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00980000201221	ENSGT00390000015889.o.a	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880
Bovinae	ANCESTRAL SPECIES	2	ENSGT00940000165737	ENSGT00940000164213	ENSGT00940000163837.A	ENSGT00940000163745	ENSGT00970000196845	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00390000015889.o.a	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770
Bos	ANCESTRAL SPECIES	3	ENSGT00940000163837.A	ENSGT00940000159725.k	ENSGT00940000164848	ENSGT00940000164062	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00390000015889.o.a	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770
Bos_b	ANCESTRAL SPECIES	2	ENSGT00940000163424	ENSGT00940000160861	ENSGT01030000234870	ENSGT00940000165041	ENSGT00970000196845	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00390000015889.o.a	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770
Cow	MODERN SPECIES	26	PCDHGC3 (ENSBTAG00000017349)	ENSBTAG00000053294	ENSBTAG00000054576	ENSBTAG00000055200	PCDHGC4 (ENSBTAG00000054197)	ENSBTAG00000030499	HDAC3 (ENSBTAG00000017360)	RELL2 (ENSBTAG00000017371)	FCHSD1 (ENSBTAG00000049248)	ARAP3 (ENSBTAG00000015938)	PCDH1 (ENSBTAG00000012518)	DELE1 (ENSBTAG00000008435)	PCDH12 (ENSBTAG00000008437)	RNF14 (ENSBTAG00000005249)	GNPDA1 (ENSBTAG00000007865)	NDFIP1 (ENSBTAG00000047747) ##22	SPRY4 (ENSBTAG00000008250) ##23	FGF1 (ENSBTAG00000005198)	ARHGAP26 (ENSBTAG00000027151)	NR3C1 (ENSBTAG00000019472)	ENSBTAG00000053427	YIPF5 (ENSBTAG00000012758)	KCTD16 (ENSBTAG00000019012)	PRELID2 (ENSBTAG00000044169)	GRXCR2 (ENSBTAG00000035966)	SH3RF2 (ENSBTAG00000006762)	PLAC8L1 (ENSBTAG00000044067)	LARS1 (ENSBTAG00000006765)	RBM27 (ENSBTAG00000011642) ##21	POU4F3 (ENSBTAG00000018817)	TCERG1 (ENSBTAG00000003259)
Hybrid Bos Indicus	MODERN SPECIES	26	ENSBIXG00005015866	ENSBIXG00005015875	ENSBIXG00005002548	ENSBIXG00005016084	DIAPH1 (ENSBIXG00005016069)	HDAC3 (ENSBIXG00005016120)	RELL2 (ENSBIXG00005016160)	FCHSD1 (ENSBIXG00005016185)	ARAP3 (ENSBIXG00005007324)	PCDH1 (ENSBIXG00005016354)	DELE1 (ENSBIXG00005016389)	PCDH12 (ENSBIXG00005016404)	RNF14 (ENSBIXG00005006352)	GNPDA1 (ENSBIXG00005016638)	ENSBIXG00005016650	NDFIP1 (ENSBIXG00005016690) ##22	SPRY4 (ENSBIXG00005016759) ##23	FGF1 (ENSBIXG00005016877)	ENSBIXG00005016954	ENSBIXG00005002750	ARHGAP26 (ENSBIXG00005017277)	NR3C1 (ENSBIXG00005017508)	YIPF5 (ENSBIXG00005017589)	KCTD16 (ENSBIXG00005017615)	PRELID2 (ENSBIXG00005017702)	GRXCR2 (ENSBIXG00005017736)	SH3RF2 (ENSBIXG00005017791)	PLAC8L1 (ENSBIXG00005017814)	LARS1 (ENSBIXG00005017859)	RBM27 (ENSBIXG00005017931) ##21	POU4F3 (ENSBIXG00005017969)
Bos_a	ANCESTRAL SPECIES	2	ENSGT00940000164906	ENSGT01030000234870	ENSGT00940000163745	ENSGT00970000196845	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
Wild yak	MODERN SPECIES	2681					PCDHGC5 (ENSBMUG00000023213)	DIAPH1 (ENSBMUG00000023057)	HDAC3 (ENSBMUG00000022826)	RELL2 (ENSBMUG00000022810)	FCHSD1 (ENSBMUG00000022800)	ARAP3 (ENSBMUG00000022770)	PCDH1 (ENSBMUG00000022733)	DELE1 (ENSBMUG00000022719)	PCDH12 (ENSBMUG00000022715)	RNF14 (ENSBMUG00000022704)	GNPDA1 (ENSBMUG00000022682)	NDFIP1 (ENSBMUG00000022666) ##22
Domestic yak	MODERN SPECIES	27	PCDHGB4 (ENSBGRG00000024857)	PCDHGB5 (ENSBGRG00000024865)	ENSBGRG00000024905	ENSBGRG00000024941	ENSBGRG00000025182	ENSBGRG00000025196	HDAC3 (ENSBGRG00000025241)	RELL2 (ENSBGRG00000025289)	FCHSD1 (ENSBGRG00000025323)	ARAP3 (ENSBGRG00000025428)	PCDH1 (ENSBGRG00000025618)	DELE1 (ENSBGRG00000025636)	PCDH12 (ENSBGRG00000025686)	RNF14 (ENSBGRG00000025698)	GNPDA1 (ENSBGRG00000010554)	NDFIP1 (ENSBGRG00000010631) ##22	SPRY4 (ENSBGRG00000010882) ##23	ENSBGRG00000010951	ARHGAP26 (ENSBGRG00000011144)	NR3C1 (ENSBGRG00000012083)	YIPF5 (ENSBGRG00000012348)	KCTD16 (ENSBGRG00000012438)	ENSBGRG00000012487	PRELID2 (ENSBGRG00000012553)	GRXCR2 (ENSBGRG00000012670)	SH3RF2 (ENSBGRG00000012738)	PLAC8L1 (ENSBGRG00000012789)	LARS1 (ENSBGRG00000012859)	RBM27 (ENSBGRG00000013279) ##21	POU4F3 (ENSBGRG00000013372)	TCERG1 (ENSBGRG00000013462)
American bison	MODERN SPECIES	3206	ENSBBBG00000001920	PCDHGB5 (ENSBBBG00000010891)	PCDHGA10 (ENSBBBG00000006979)	ENSBBBG00000010884	PCDHGC5 (ENSBBBG00000010882)	DIAPH1 (ENSBBBG00000010855)	HDAC3 (ENSBBBG00000010603)	RELL2 (ENSBBBG00000010596)	FCHSD1 (ENSBBBG00000010579)	ARAP3 (ENSBBBG00000010532)	PCDH1 (ENSBBBG00000010418)	DELE1 (ENSBBBG00000010411)	PCDH12 (ENSBBBG00000010402)	RNF14 (ENSBBBG00000010396)	GNPDA1 (ENSBBBG00000010370)	NDFIP1 (ENSBBBG00000001802) ##22	SPRY4 (ENSBBBG00000010347) ##23	ENSBBBG00000010338	ARHGAP26 (ENSBBBG00000010307)	NR3C1 (ENSBBBG00000010266)	ENSBBBG00000010259	YIPF5 (ENSBBBG00000010257)	KCTD16 (ENSBBBG00000000047)	PRELID2 (ENSBBBG00000000057)	GRXCR2 (ENSBBBG00000000069)	SH3RF2 (ENSBBBG00000000078)	PLAC8L1 (ENSBBBG00000000097)	LARS1 (ENSBBBG00000000111)	RBM27 (ENSBBBG00000010244) ##21	POU4F3 (ENSBBBG00000010233)	TCERG1 (ENSBBBG00000010226)
Caprinae	ANCESTRAL SPECIES	3	ENSGT00940000164471	ENSGT00940000164742	ENSGT00940000156683.i	ENSGT00940000159725.k	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00390000015889.o.a	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770
Goat	MODERN SPECIES	26	PCDHGA6 (ENSCHIG00000024001)	PCDHGA7 (ENSCHIG00000008955)	PCDHGB5 (ENSCHIG00000025750)	ENSCHIG00000023838	PCDHGC4 (ENSCHIG00000018689)	DIAPH1 (ENSCHIG00000025262)	HDAC3 (ENSCHIG00000023640)	RELL2 (ENSCHIG00000026988)	FCHSD1 (ENSCHIG00000020273)	ARAP3 (ENSCHIG00000009541)	PCDH1 (ENSCHIG00000013193)	DELE1 (ENSCHIG00000013236)	PCDH12 (ENSCHIG00000024645)	ENSCHIG00000011504	ENSCHIG00000015196	NDFIP1 (ENSCHIG00000025513) ##22	SPRY4 (ENSCHIG00000004220) ##23	FGF1 (ENSCHIG00000026836)	ENSCHIG00000024786	ENSCHIG00000011003	NR3C1 (ENSCHIG00000016782)	ENSCHIG00000018962	ENSCHIG00000019032	KCTD16 (ENSCHIG00000003718)	PRELID2 (ENSCHIG00000026758)	GRXCR2 (ENSCHIG00000001744)	SH3RF2 (ENSCHIG00000014437)	PLAC8L1 (ENSCHIG00000012035)	LARS1 (ENSCHIG00000014949)	RBM27 (ENSCHIG00000009045) ##21	POU4F3 (ENSCHIG00000018754)
Rambouillet Sheep	MODERN SPECIES	21	ENSOARG00020016987	PCDHGB5 (ENSOARG00020017016)	ENSOARG00020017056	ENSOARG00020017102	ENSOARG00020017139	ENSOARG00020017189	HDAC3 (ENSOARG00020017344)	RELL2 (ENSOARG00020017412)	FCHSD1 (ENSOARG00020017521)	ARAP3 (ENSOARG00020018082)	PCDH1 (ENSOARG00020018848)	DELE1 (ENSOARG00020018970)	PCDH12 (ENSOARG00020019089)	RNF14 (ENSOARG00020019149)	GNPDA1 (ENSOARG00020019253)	NDFIP1 (ENSOARG00020019295) ##22	SPRY4 (ENSOARG00020019332) ##23	ENSOARG00020019371	ARHGAP26 (ENSOARG00020019500)	NR3C1 (ENSOARG00020019996)	ENSOARG00020020171	YIPF5 (ENSOARG00020020202)	KCTD16 (ENSOARG00020020241)	ENSOARG00020020289	PRELID2 (ENSOARG00020020309)	GRXCR2 (ENSOARG00020020373)	SH3RF2 (ENSOARG00020020399)	PLAC8L1 (ENSOARG00020020461)	ENSOARG00020020500	RBM27 (ENSOARG00020020611) ##21	POU4F3 (ENSOARG00020021135)
Siberian musk deer	MODERN SPECIES	48	TAF7 (ENSMMSG00000003968)	ENSMMSG00000003960	ENSMMSG00000003952	PCDHGA4 (ENSMMSG00000003880)	DIAPH1 (ENSMMSG00000003825)	HDAC3 (ENSMMSG00000003806)	RELL2 (ENSMMSG00000003780)	FCHSD1 (ENSMMSG00000003720)	ARAP3 (ENSMMSG00000003600)	PCDH1 (ENSMMSG00000003563)	ENSMMSG00000003546	DELE1 (ENSMMSG00000003513)	PCDH12 (ENSMMSG00000003488)	RNF14 (ENSMMSG00000003466)	ENSMMSG00000003449	NDFIP1 (ENSMMSG00000003431) ##22	SPRY4 (ENSMMSG00000003413) ##23	ENSMMSG00000003396	ENSMMSG00000003377	ARHGAP26 (ENSMMSG00000003321)	NR3C1 (ENSMMSG00000003275)	ENSMMSG00000003260	ENSMMSG00000003245	KCTD16 (ENSMMSG00000003235)	ENSMMSG00000003232	ENSMMSG00000003223	PRELID2 (ENSMMSG00000003206)	GRXCR2 (ENSMMSG00000003194)
Yarkand deer	MODERN SPECIES	32	ENSCHYG00000024053	ENSCHYG00000024110	ENSCHYG00000024141	PCDHGC5 (ENSCHYG00000024191)	ENSCHYG00000024579	DIAPH1 (ENSCHYG00000024635)	HDAC3 (ENSCHYG00000025260)	RELL2 (ENSCHYG00000025303)	FCHSD1 (ENSCHYG00000000556)	ARAP3 (ENSCHYG00000000730)	PCDH1 (ENSCHYG00000000987)	DELE1 (ENSCHYG00000001016)	PCDH12 (ENSCHYG00000001058)	RNF14 (ENSCHYG00000001095)	GNPDA1 (ENSCHYG00000001122)	NDFIP1 (ENSCHYG00000001178) ##22	ENSCHYG00000001243	SPRY4 (ENSCHYG00000001254) ##23	FGF1 (ENSCHYG00000001270)	ARHGAP26 (ENSCHYG00000001323)	NR3C1 (ENSCHYG00000001678)	ENSCHYG00000001725	KCTD16 (ENSCHYG00000001801)	PRELID2 (ENSCHYG00000001852)	GRXCR2 (ENSCHYG00000001867)	SH3RF2 (ENSCHYG00000001884)	PLAC8L1 (ENSCHYG00000001902)	ENSCHYG00000001917	LARS1 (ENSCHYG00000001948)	RBM27 (ENSCHYG00000002059) ##21	POU4F3 (ENSCHYG00000002164)
Cetacea	ANCESTRAL SPECIES	1	ENSGT00940000163837.A	ENSGT00940000164062	ENSGT00940000164266	ENSGT00940000162232	ENSGT00970000196845	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00940000163745	ENSGT00970000196845	ENSGT00940000164062	ENSGT00940000164266	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000162690.g	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT01010000228946	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880
Sperm whale	MODERN SPECIES	19	ENSPCTG00005001223	ENSPCTG00005001231	PCDHB13 (ENSPCTG00005001250)	PCDHB16 (ENSPCTG00005001262)	PCDHB14 (ENSPCTG00005001268)	ENSPCTG00005001283	PCDHB15 (ENSPCTG00005001299)	SLC25A2 (ENSPCTG00005001314)	TAF7 (ENSPCTG00005001330)	PCDHGA4 (ENSPCTG00005001403)	PCDHGA7 (ENSPCTG00005001525)	ENSPCTG00005001532	DIAPH1 (ENSPCTG00005001591)	RNF14 (ENSPCTG00005001666)	GNPDA1 (ENSPCTG00005001693)	NDFIP1 (ENSPCTG00005001714) ##22	SPRY4 (ENSPCTG00005001745) ##23	FGF1 (ENSPCTG00005001764)	ARHGAP26 (ENSPCTG00005001818)	NR3C1 (ENSPCTG00005001935)	ENSPCTG00005001962	ENSPCTG00005001975	YIPF5 (ENSPCTG00005002005)	ENSPCTG00005002016	KCTD16 (ENSPCTG00005002030)	ENSPCTG00005002042	ENSPCTG00005002068	GRXCR2 (ENSPCTG00005002131)	ENSPCTG00005002139	SH3RF2 (ENSPCTG00005002153)	PLAC8L1 (ENSPCTG00005002187)
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00940000163745	ENSGT00970000196845	ENSGT00940000164062	ENSGT00940000164266	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B.r	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000159969.b	ENSGT00940000162690.g	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT01010000228946	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21
Dolphin	MODERN SPECIES	2767												DELE1 (ENSTTRG00000012119)	PCDH12 (ENSTTRG00000012143)	RNF14 (ENSTTRG00000012157)	GNPDA1 (ENSTTRG00000012182)	NDFIP1 (ENSTTRG00000012188) ##22
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00940000163745	ENSGT00970000196845	ENSGT00940000164062	ENSGT00940000164266	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B.r	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153305.d.x	ENSGT00390000005848.j.b	ENSGT00940000153168.C.a.a	ENSGT00940000159969.b	ENSGT00940000162690.g	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT01010000228946	ENSGT00940000160067	ENSGT00940000160864
Vaquita	MODERN SPECIES	14	ENSPSNG00000002668	ENSPSNG00000002645	ENSPSNG00000002624	PCDHGA4 (ENSPSNG00000002513)	ENSPSNG00000002410	DIAPH1 (ENSPSNG00000002371)	HDAC3 (ENSPSNG00000002314)	RELL2 (ENSPSNG00000002269)	FCHSD1 (ENSPSNG00000002214)	ARAP3 (ENSPSNG00000002102)	PCDH1 (ENSPSNG00000002048)	DELE1 (ENSPSNG00000002006)	PCDH12 (ENSPSNG00000001978)	RNF14 (ENSPSNG00000001958)	GNPDA1 (ENSPSNG00000001937)	NDFIP1 (ENSPSNG00000001914) ##22	SPRY4 (ENSPSNG00000001877) ##23	FGF1 (ENSPSNG00000001841)	ARHGAP26 (ENSPSNG00000001716)	NR3C1 (ENSPSNG00000001614)	ENSPSNG00000001561	ENSPSNG00000001546	ENSPSNG00000001516	ENSPSNG00000001497	YIPF5 (ENSPSNG00000001481)	KCTD16 (ENSPSNG00000001468)	ENSPSNG00000001457	PRELID2 (ENSPSNG00000001434)	ENSPSNG00000001406	ENSPSNG00000001397	SH3RF2 (ENSPSNG00000001368)
Monodontidae	ANCESTRAL SPECIES	7	ENSGT00940000162842	ENSGT00940000164062	ENSGT00940000164266	ENSGT00940000162232	ENSGT00970000196845	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B.r	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153305.d.x	ENSGT00390000005848.j.b	ENSGT01100000263511.b.a.a.a.b.a.a.a.b.a.b.a.b.b.a.a.b.a.a.a.b	ENSGT00940000153168.C.a.a	ENSGT00940000162690.g	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT01010000228946	ENSGT00940000160067	ENSGT00940000160864
Narwhal	MODERN SPECIES	298	PCDHGC5 (ENSMMNG00015002376)	PCDHGA2 (ENSMMNG00015002477)	ENSMMNG00015002498	ENSMMNG00015002510	ENSMMNG00015002539	ENSMMNG00015002561	HDAC3 (ENSMMNG00015002599)	RELL2 (ENSMMNG00015002647)	FCHSD1 (ENSMMNG00015002690)	ARAP3 (ENSMMNG00015002730)	PCDH1 (ENSMMNG00015002819)	DELE1 (ENSMMNG00015002837)	PCDH12 (ENSMMNG00015002859)	RNF14 (ENSMMNG00015002876)	GNPDA1 (ENSMMNG00015002894)	NDFIP1 (ENSMMNG00015002925) ##22	SPRY4 (ENSMMNG00015002971) ##23	FGF1 (ENSMMNG00015002994)	ARHGAP26 (ENSMMNG00015003086)	NR3C1 (ENSMMNG00015003229)	ENSMMNG00015003263	ENSMMNG00015003271	ENSMMNG00015003281	YIPF5 (ENSMMNG00015003322)	ENSMMNG00015003351	KCTD16 (ENSMMNG00015003368)	ENSMMNG00015003453	ENSMMNG00015003469	PRELID2 (ENSMMNG00015003496)	GRXCR2 (ENSMMNG00015003518)	ENSMMNG00015003539
Beluga whale	MODERN SPECIES	34	ENSDLEG00000001476	PCDHGC3 (ENSDLEG00000001489)	PCDHGC4 (ENSDLEG00000001496)	DIAPH1 (ENSDLEG00000001656)	HDAC3 (ENSDLEG00000002572)	RELL2 (ENSDLEG00000002712)	FCHSD1 (ENSDLEG00000002735)	ENSDLEG00000002747	ARAP3 (ENSDLEG00000002782)	PCDH1 (ENSDLEG00000002801)	ENSDLEG00000002807	KIAA0141 (ENSDLEG00000002820)	PCDH12 (ENSDLEG00000002841)	RNF14 (ENSDLEG00000002851)	GNPDA1 (ENSDLEG00000002862)	NDFIP1 (ENSDLEG00000002873) ##22	SPRY4 (ENSDLEG00000002933) ##23	FGF1 (ENSDLEG00000002945)	ARHGAP26 (ENSDLEG00000002974)	NR3C1 (ENSDLEG00000003062)	ENSDLEG00000003071	ENSDLEG00000003074	ENSDLEG00000003080	YIPF5 (ENSDLEG00000003097)	ENSDLEG00000003106	KCTD16 (ENSDLEG00000003115)	ENSDLEG00000003120	PRELID2 (ENSDLEG00000003127)	SH3RF2 (ENSDLEG00000003139)	LARS (ENSDLEG00000003168)	RBM27 (ENSDLEG00000003245) ##21
Blue whale	MODERN SPECIES	14	ENSBMSG00010003024	PCDHGB5 (ENSBMSG00010003039)	ENSBMSG00010003048	ENSBMSG00010003061	ENSBMSG00010003086	ENSBMSG00010003107	HDAC3 (ENSBMSG00010003120)	RELL2 (ENSBMSG00010003137)	FCHSD1 (ENSBMSG00010003204)	ARAP3 (ENSBMSG00010003360)	PCDH1 (ENSBMSG00010003423)	DELE1 (ENSBMSG00010003464)	PCDH12 (ENSBMSG00010003478)	RNF14 (ENSBMSG00010003493)	GNPDA1 (ENSBMSG00010003508)	NDFIP1 (ENSBMSG00010003523) ##22	SPRY4 (ENSBMSG00010003542) ##23	FGF1 (ENSBMSG00010003558)	ARHGAP26 (ENSBMSG00010003600)	NR3C1 (ENSBMSG00010003624)	ENSBMSG00010003675	YIPF5 (ENSBMSG00010003706)	ENSBMSG00010003719	KCTD16 (ENSBMSG00010003732)	PRELID2 (ENSBMSG00010003746)	GRXCR2 (ENSBMSG00010003760)	SH3RF2 (ENSBMSG00010003783)	PLAC8L1 (ENSBMSG00010003800)	LARS1 (ENSBMSG00010003837)	RBM27 (ENSBMSG00010003903) ##21	POU4F3 (ENSBMSG00010003939)
Laurasiatheria_b	ANCESTRAL SPECIES	9	ENSGT00940000164848	ENSGT00940000159725.k	ENSGT00940000162232	ENSGT00940000164266	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT01050000246758	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00390000009781	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770
Laurasiatheria_c	ANCESTRAL SPECIES	7	ENSGT00940000164213	ENSGT00940000159725.k	ENSGT00940000162232	ENSGT00940000164266	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT01050000246758	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00390000009781	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770
Chiroptera	ANCESTRAL SPECIES	1	ENSGT00940000156683.j	ENSGT00940000164213	ENSGT00940000159725.k	ENSGT00940000162232	ENSGT00940000164266	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00390000009781	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770
Microchiroptera	ANCESTRAL SPECIES	3	ENSGT00940000156683.j	ENSGT00940000164213	ENSGT00940000159725.k	ENSGT00940000162232	ENSGT00940000164266	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00390000009781	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770
Greater horseshoe bat	MODERN SPECIES	16	SLC25A2 (ENSRFEG00010006191)	TAF7 (ENSRFEG00010006204)	PCDHGC3 (ENSRFEG00010006307)	ENSRFEG00010006496	DIAPH1 (ENSRFEG00010006574)	ENSRFEG00010006781	RELL2 (ENSRFEG00010006841)	FCHSD1 (ENSRFEG00010006953)	ARAP3 (ENSRFEG00010007170)	ENSRFEG00010007296	PCDH1 (ENSRFEG00010007326)	DELE1 (ENSRFEG00010007416)	PCDH12 (ENSRFEG00010007543)	RNF14 (ENSRFEG00010007576)	GNPDA1 (ENSRFEG00010007628)	NDFIP1 (ENSRFEG00010007668) ##22	SPRY4 (ENSRFEG00010007705) ##23	FGF1 (ENSRFEG00010007768)	ARHGAP26 (ENSRFEG00010007845)	NR3C1 (ENSRFEG00010008132)	HMHB1 (ENSRFEG00010008275)	YIPF5 (ENSRFEG00010008320)	ENSRFEG00010008367	KCTD16 (ENSRFEG00010008389)	PRELID2 (ENSRFEG00010008426)	GRXCR2 (ENSRFEG00010008510)	SH3RF2 (ENSRFEG00010008576)	PLAC8L1 (ENSRFEG00010008620)	LARS1 (ENSRFEG00010008684)	RBM27 (ENSRFEG00010008875) ##21	POU4F3 (ENSRFEG00010008985)
Microbat	MODERN SPECIES	965	PCDHGB4 (ENSMLUG00000024024)	PCDHGA10 (ENSMLUG00000026036)	ENSMLUG00000028837	PCDHGC4 (ENSMLUG00000023592)	PCDHGC3 (ENSMLUG00000001812)	DIAPH1 (ENSMLUG00000001822)	HDAC3 (ENSMLUG00000008662)	RELL2 (ENSMLUG00000023054)	FCHSD1 (ENSMLUG00000008699)	ARAP3 (ENSMLUG00000008745)	PCDH1 (ENSMLUG00000016121)	DELE1 (ENSMLUG00000013039)	PCDH12 (ENSMLUG00000003402)	ENSMLUG00000003410	ENSMLUG00000003413	NDFIP1 (ENSMLUG00000003418) ##22	SPRY4 (ENSMLUG00000012443) ##23	FGF1 (ENSMLUG00000007107)	ENSMLUG00000007111	ENSMLUG00000024725	NR3C1 (ENSMLUG00000011289)	YIPF5 (ENSMLUG00000011143)	KCTD16 (ENSMLUG00000012507)	PRELID2 (ENSMLUG00000001107)	ENSMLUG00000027921	GRXCR2 (ENSMLUG00000028885)	SH3RF2 (ENSMLUG00000001112)	PLAC8L1 (ENSMLUG00000001117)	LARS1 (ENSMLUG00000001125)	RBM27 (ENSMLUG00000000643) ##21	POU4F3 (ENSMLUG00000026870)
Megabat	MODERN SPECIES	531																NDFIP1 (ENSPVAG00000013340) ##22
Equus	ANCESTRAL SPECIES	6	ENSGT00940000160861	ENSGT01030000234870	ENSGT00940000163837.A	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT01050000246758	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00950000182891.a.a.b.a.a.a.a	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770
Donkey	MODERN SPECIES	3	TAF7 (ENSEASG00005018132)	ENSEASG00005018138	PCDHGA5 (ENSEASG00005018141)	ENSEASG00005018139	ENSEASG00005018159	DIAPH1 (ENSEASG00005018237)	HDAC3 (ENSEASG00005018816)	RELL2 (ENSEASG00005020320)	FCHSD1 (ENSEASG00005020339)	ARAP3 (ENSEASG00005020395)	PCDH1 (ENSEASG00005020494)	DELE1 (ENSEASG00005020498)	PCDH12 (ENSEASG00005020502)	RNF14 (ENSEASG00005020505)	GNPDA1 (ENSEASG00005020509)	NDFIP1 (ENSEASG00005020512) ##22	SPRY4 (ENSEASG00005028548) ##23	FGF1 (ENSEASG00005029769)	ARHGAP26 (ENSEASG00005020526)	NR3C1 (ENSEASG00005020535)	ENSEASG00005020540	YIPF5 (ENSEASG00005020543)	KCTD16 (ENSEASG00005020544)	PRELID2 (ENSEASG00005030270)	ENSEASG00005020561	SH3RF2 (ENSEASG00005020563)	PLAC8L1 (ENSEASG00005020565)	LARS1 (ENSEASG00005020569)	ENSEASG00005036402	RBM27 (ENSEASG00005020588) ##21	POU4F3 (ENSEASG00005020601)
Horse	MODERN SPECIES	5	PCDHGA7 (ENSECAG00000044783)	ENSECAG00000036637	PCDHGC5 (ENSECAG00000016123)	DIAPH1 (ENSECAG00000020822)	HDAC3 (ENSECAG00000020589)	RELL2 (ENSECAG00000020085)	FCHSD1 (ENSECAG00000017933)	ARAP3 (ENSECAG00000015544)	PCDH1 (ENSECAG00000015153)	ENSECAG00000039829	DELE1 (ENSECAG00000011434)	PCDH12 (ENSECAG00000011213)	RNF14 (ENSECAG00000003091)	ENSECAG00000036167	GNPDA1 (ENSECAG00000023055)	NDFIP1 (ENSECAG00000021907) ##22	SPRY4 (ENSECAG00000005384) ##23	FGF1 (ENSECAG00000020769)	ARHGAP26 (ENSECAG00000012336)	NR3C1 (ENSECAG00000009473)	YIPF5 (ENSECAG00000003965)	KCTD16 (ENSECAG00000005159)	PRELID2 (ENSECAG00000024895)	GRXCR2 (ENSECAG00000024891)	SH3RF2 (ENSECAG00000024467)	PLAC8L1 (ENSECAG00000024464)	LARS1 (ENSECAG00000008963)	ENSECAG00000036137	RBM27 (ENSECAG00000000883) ##21	POU4F3 (ENSECAG00000018410)	ENSECAG00000031292
Carnivora	ANCESTRAL SPECIES	8	ENSGT00940000164062	ENSGT00940000159725.k	ENSGT00940000162232	ENSGT00940000164266	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT01050000246758	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
Felidae	ANCESTRAL SPECIES	6	ENSGT00940000164488	ENSGT00940000164213	ENSGT00940000164848	ENSGT00940000163837.A	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
Panthera	ANCESTRAL SPECIES	6	ENSGT00940000164488	ENSGT00940000164213	ENSGT00940000164848	ENSGT00940000163837.A	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
Tiger	MODERN SPECIES	107	PCDHGA10 (ENSPTIG00000021534)	PCDHGB7 (ENSPTIG00000021683)	ENSPTIG00000021775	PCDHGC5 (ENSPTIG00000021883)	DIAPH1 (ENSPTIG00000003602)	HDAC3 (ENSPTIG00000006047)	RELL2 (ENSPTIG00000007415)	FCHSD1 (ENSPTIG00000009206)	ARAP3 (ENSPTIG00000012770)	PCDH1 (ENSPTIG00000015128)	DELE1 (ENSPTIG00000016048)	PCDH12 (ENSPTIG00000017496)	RNF14 (ENSPTIG00000017738)	GNPDA1 (ENSPTIG00000019610)	ENSPTIG00000019892	NDFIP1 (ENSPTIG00000020133) ##22	SPRY4 (ENSPTIG00000020238) ##23	FGF1 (ENSPTIG00000020589)	ARHGAP26 (ENSPTIG00000021468)	NR3C1 (ENSPTIG00000000485)	YIPF5 (ENSPTIG00000007830)	KCTD16 (ENSPTIG00000008553)
Panthera_a	ANCESTRAL SPECIES	3	ENSGT00940000164742	ENSGT00940000164488	ENSGT00940000164213	ENSGT00940000163837.A	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
lion	MODERN SPECIES		ENSPLOG00000000811	ENSPLOG00000000801	ENSPLOG00000000791	PCDHGC5 (ENSPLOG00000000683)	DIAPH1 (ENSPLOG00000000570)	HDAC3 (ENSPLOG00000000526)	RELL2 (ENSPLOG00000000497)	FCHSD1 (ENSPLOG00000000420)	ARAP3 (ENSPLOG00000000294)	PCDH1 (ENSPLOG00000000233)	DELE1 (ENSPLOG00000000214)	PCDH12 (ENSPLOG00000000204)	RNF14 (ENSPLOG00000000188)	ENSPLOG00000000179	GNPDA1 (ENSPLOG00000000164)	NDFIP1 (ENSPLOG00000000146) ##22	SPRY4 (ENSPLOG00000000139) ##23	FGF1 (ENSPLOG00000000125)	ARHGAP26 (ENSPLOG00000000069)	NR3C1 (ENSPLOG00000000037)	YIPF5 (ENSPLOG00000000028)	KCTD16 (ENSPLOG00000000025)	PRELID2 (ENSPLOG00000000017)	GRXCR2 (ENSPLOG00000000011)	ENSPLOG00000000009	SH3RF2 (ENSPLOG00000000007)	PLAC8L1 (ENSPLOG00000000005)	LARS1 (ENSPLOG00000011167)	RBM27 (ENSPLOG00000011091) ##21	POU4F3 (ENSPLOG00000011049)	TCERG1 (ENSPLOG00000010968)
leopard	MODERN SPECIES	98	ENSPPRG00000016183	PCDHGA8 (ENSPPRG00000010244)	PCDHGA10 (ENSPPRG00000009677)	PCDHGC5 (ENSPPRG00000009263)	DIAPH1 (ENSPPRG00000008640)	HDAC3 (ENSPPRG00000002299)	RELL2 (ENSPPRG00000002021)	FCHSD1 (ENSPPRG00000000859)	ARAP3 (ENSPPRG00000021607)	PCDH1 (ENSPPRG00000014658)	DELE1 (ENSPPRG00000013758)	PCDH12 (ENSPPRG00000012842)	RNF14 (ENSPPRG00000012514)	GNPDA1 (ENSPPRG00000009524)	ENSPPRG00000008366	NDFIP1 (ENSPPRG00000008202) ##22	SPRY4 (ENSPPRG00000007021) ##23	FGF1 (ENSPPRG00000006650)	ARHGAP26 (ENSPPRG00000005201)	NR3C1 (ENSPPRG00000002713)	YIPF5 (ENSPPRG00000001195)	KCTD16 (ENSPPRG00000000825)
Cat	MODERN SPECIES		PCDHGB1 (ENSFCAG00000032207)	ENSFCAG00000043933	PCDHGA6 (ENSFCAG00000038545)	ENSFCAG00000048935	ENSFCAG00000050736	DIAPH1 (ENSFCAG00000031011)	HDAC3 (ENSFCAG00000006904)	RELL2 (ENSFCAG00000006905)	FCHSD1 (ENSFCAG00000006907)	ARAP3 (ENSFCAG00000006908)	PCDH1 (ENSFCAG00000009395)	DELE1 (ENSFCAG00000009397)	PCDH12 (ENSFCAG00000009401)	RNF14 (ENSFCAG00000009402)	GNPDA1 (ENSFCAG00000009404)	NDFIP1 (ENSFCAG00000009405) ##22	SPRY4 (ENSFCAG00000003690) ##23	FGF1 (ENSFCAG00000035589)	ARHGAP26 (ENSFCAG00000009125)	NR3C1 (ENSFCAG00000026823)	YIPF5 (ENSFCAG00000031350)	KCTD16 (ENSFCAG00000008002)	PRELID2 (ENSFCAG00000003768)	GRXCR2 (ENSFCAG00000008710)	SH3RF2 (ENSFCAG00000008712)	ENSFCAG00000050337	ENSFCAG00000047144	PLAC8L1 (ENSFCAG00000008714)	LARS1 (ENSFCAG00000008715)	RBM27 (ENSFCAG00000005792) ##21	POU4F3 (ENSFCAG00000030722)
Caniformia	ANCESTRAL SPECIES	5	ENSGT00940000164062	ENSGT00940000159725.k	ENSGT00940000162232	ENSGT00940000164266	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT01050000246758	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
Canidae	ANCESTRAL SPECIES	29	ENSGT00940000164213	ENSGT00940000164848	ENSGT00940000163837.A	ENSGT00940000162232	ENSGT00940000164266	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00390000018173.a.a.b	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770
Canis_lupus	ANCESTRAL SPECIES	6	ENSGT00940000164213	ENSGT00940000164062	ENSGT00940000163837.A	ENSGT00940000162232	ENSGT00940000164266	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000183206.b.c.a.a.a.a	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00390000018173.a.a.b	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880
Dog	MODERN SPECIES	11	PCDHGC5 (ENSCAFG00845003281)	PCDHGB1 (ENSCAFG00845003347)	ENSCAFG00845015664	PCDHGB5 (ENSCAFG00845015684)	ENSCAFG00845015703	DIAPH1 (ENSCAFG00845015899)	HDAC3 (ENSCAFG00845016246)	RELL2 (ENSCAFG00845016298)	FCHSD1 (ENSCAFG00845016411)	ARAP3 (ENSCAFG00845016835)	PCDH1 (ENSCAFG00845017072)	DELE1 (ENSCAFG00845017218)	PCDH12 (ENSCAFG00845017466)	RNF14 (ENSCAFG00845017515)	GNPDA1 (ENSCAFG00845017587)	NDFIP1 (ENSCAFG00845017691) ##22	SPRY4 (ENSCAFG00845017769) ##23	FGF1 (ENSCAFG00845017942)	ENSCAFG00845018015	ARHGAP26 (ENSCAFG00845018298)	NR3C1 (ENSCAFG00845019024)	YIPF5 (ENSCAFG00845019282)	KCTD16 (ENSCAFG00845019378)	ENSCAFG00845019408	PRELID2 (ENSCAFG00845019475)	GRXCR2 (ENSCAFG00845019581)	SH3RF2 (ENSCAFG00845019659)	ENSCAFG00845019832	PLAC8L1 (ENSCAFG00845019862)	LARS1 (ENSCAFG00845020164)	RBM27 (ENSCAFG00845021678) ##21
Dingo	MODERN SPECIES	98	ENSCAFG00020021088	PCDHGC4 (ENSCAFG00020021085)	PCDHGC5 (ENSCAFG00020021083)	ENSCAFG00020021079	ENSCAFG00020021077	DIAPH1 (ENSCAFG00020020478)	HDAC3 (ENSCAFG00020020439)	RELL2 (ENSCAFG00020020433)	FCHSD1 (ENSCAFG00020020332)	ARAP3 (ENSCAFG00020020116)	PCDH1 (ENSCAFG00020020102)	DELE1 (ENSCAFG00020020081)	PCDH12 (ENSCAFG00020020076)	RNF14 (ENSCAFG00020020070)	GNPDA1 (ENSCAFG00020020065)	NDFIP1 (ENSCAFG00020020061) ##22	SPRY4 (ENSCAFG00020020057) ##23	FGF1 (ENSCAFG00020020051)	ENSCAFG00020019975	ENSCAFG00020019915	NR3C1 (ENSCAFG00020019903)	YIPF5 (ENSCAFG00020019879)	KCTD16 (ENSCAFG00020019874)	ENSCAFG00020019869
Red fox	MODERN SPECIES	4	ENSVVUG00000017536	ENSVVUG00000017538	PCDHGC5 (ENSVVUG00000017542)	PCDHGC4 (ENSVVUG00000017561)	DIAPH1 (ENSVVUG00000017639)	HDAC3 (ENSVVUG00000019813)	RELL2 (ENSVVUG00000020795)	FCHSD1 (ENSVVUG00000020811)	ARAP3 (ENSVVUG00000020896)	PCDH1 (ENSVVUG00000021008)	DELE1 (ENSVVUG00000021010)	PCDH12 (ENSVVUG00000021014)	RNF14 (ENSVVUG00000021016)	GNPDA1 (ENSVVUG00000021018)	ENSVVUG00000021023	NDFIP1 (ENSVVUG00000021026) ##22	SPRY4 (ENSVVUG00000021030) ##23	ENSVVUG00000021037	FGF1 (ENSVVUG00000021039)	ARHGAP26 (ENSVVUG00000021049)	NR3C1 (ENSVVUG00000021086)	YIPF5 (ENSVVUG00000021096)	ENSVVUG00000021099	ENSVVUG00000021101	ENSVVUG00000021113	PRELID2 (ENSVVUG00000021114)	GRXCR2 (ENSVVUG00000021117)	SH3RF2 (ENSVVUG00000021119)	ENSVVUG00000021121	PLAC8L1 (ENSVVUG00000021122)	LARS (ENSVVUG00000021124)
Caniformia_b	ANCESTRAL SPECIES	4	ENSGT00940000164213	ENSGT00940000163837.A	ENSGT00940000159725.k	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT01050000246758	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
Mustelinae	ANCESTRAL SPECIES	17	ENSGT00940000164018	ENSGT01030000234870	ENSGT00940000164488	ENSGT00940000164848	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
American mink	MODERN SPECIES	230											PCDH1 (ENSNVIG00000021244)	DELE1 (ENSNVIG00000021230)	PCDH12 (ENSNVIG00000021215)	RNF14 (ENSNVIG00000021191)	GNPDA1 (ENSNVIG00000021171)	NDFIP1 (ENSNVIG00000021164) ##22	SPRY4 (ENSNVIG00000021156) ##23	ENSNVIG00000021146	FGF1 (ENSNVIG00000021093)	ARHGAP26 (ENSNVIG00000020957)	NR3C1 (ENSNVIG00000020888)	YIPF5 (ENSNVIG00000020864)	KCD16 (ENSNVIG00000020856)
Ferret	MODERN SPECIES	175	ENSMPUG00000020046	PCDHGA4 (ENSMPUG00000008329)	ENSMPUG00000008327	PCDHGA7 (ENSMPUG00000008323)	ENSMPUG00000008317	DIAPH1 (ENSMPUG00000008293)	HDAC3 (ENSMPUG00000008187)	RELL2 (ENSMPUG00000008178)	FCHSD1 (ENSMPUG00000008022)	ARAP3 (ENSMPUG00000007996)	PCDH1 (ENSMPUG00000007992)	DELE1 (ENSMPUG00000007978)	PCDH12 (ENSMPUG00000007971)	RNF14 (ENSMPUG00000007962)	GNPDA1 (ENSMPUG00000007954)	NDFIP1 (ENSMPUG00000007951) ##22	SPRY4 (ENSMPUG00000020045) ##23	FGF1 (ENSMPUG00000007946)	ARHGAP26 (ENSMPUG00000007885)	NR3C1 (ENSMPUG00000007881)	YIPF5 (ENSMPUG00000007876)	KCTD16 (ENSMPUG00000020044)	ENSMPUG00000007874	ENSMPUG00000007870	SH3RF2 (ENSMPUG00000007867)	PLAC8L1 (ENSMPUG00000007862)	LARS1 (ENSMPUG00000007844)	RBM27 (ENSMPUG00000007832) ##21	POU4F3 (ENSMPUG00000007828)	TCERG1 (ENSMPUG00000007817)	GPR151 (ENSMPUG00000020043)
Ursidae	ANCESTRAL SPECIES	16	ENSGT00940000165737	ENSGT00940000164213	ENSGT00940000159725.k	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT01050000246758	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
Ursus	ANCESTRAL SPECIES	3	ENSGT00940000165737	ENSGT00940000164213	ENSGT00940000163837.A	ENSGT00940000159725.k	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521	ENSGT00390000002137	ENSGT00940000160403	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
Polar bear	MODERN SPECIES	173	ENSUMAG00000012682	ENSUMAG00000012678	PCDHGC4 (ENSUMAG00000012671)	ENSUMAG00000012663	DIAPH1 (ENSUMAG00000011950)	HDAC3 (ENSUMAG00000011842)	RELL2 (ENSUMAG00000011823)	FCHSD1 (ENSUMAG00000011810)	ARAP3 (ENSUMAG00000011782)	PCDH1 (ENSUMAG00000011759)	DELE1 (ENSUMAG00000011684)	PCDH12 (ENSUMAG00000011675)	RNF14 (ENSUMAG00000011666)	GNPDA1 (ENSUMAG00000011661)	ENSUMAG00000011650	NDFIP1 (ENSUMAG00000011647) ##22	SPRY4 (ENSUMAG00000011636) ##23	FGF1 (ENSUMAG00000011608)	ARHGAP26 (ENSUMAG00000010809)	NR3C1 (ENSUMAG00000010689)	YIPF5 (ENSUMAG00000010661)	ENSUMAG00000010656	ENSUMAG00000010649	PRELID2 (ENSUMAG00000010620)	GRXCR2 (ENSUMAG00000010609)	SH3RF2 (ENSUMAG00000010600)	PLAC8L1 (ENSUMAG00000010598)	LARS1 (ENSUMAG00000010585)	RBM27 (ENSUMAG00000010569) ##21	POU4F3 (ENSUMAG00000010562)	TCERG1 (ENSUMAG00000010213)
American black bear	MODERN SPECIES	2522													PCDH12 (ENSUAMG00000013163)	RNF14 (ENSUAMG00000013165)	GNPDA1 (ENSUAMG00000013169)	NDFIP1 (ENSUAMG00000013170) ##22
Giant Panda	DUPLICATION
Giant Panda	MODERN SPECIES	488																ENSAMEG00000027280 ##22
Giant Panda	MODERN SPECIES	13	ENSAMEG00000030355	ENSAMEG00000029318	ENSAMEG00000025372	ENSAMEG00000024081	DIAPH1 (ENSAMEG00000010486)	HDAC3 (ENSAMEG00000010427)	RELL2 (ENSAMEG00000010425)	FCHSD1 (ENSAMEG00000010382)	ARAP3 (ENSAMEG00000010309)	PCDH1 (ENSAMEG00000010278)	ENSAMEG00000030636	DELE1 (ENSAMEG00000010287)	PCDH12 (ENSAMEG00000010273)	RNF14 (ENSAMEG00000010249)	GNPDA1 (ENSAMEG00000010219)	NDFIP1 (ENSAMEG00000010200) ##22	SPRY4 (ENSAMEG00000020129) ##23	FGF1 (ENSAMEG00000010197)	ARHGAP26 (ENSAMEG00000010167)	NR3C1 (ENSAMEG00000010159)	YIPF5 (ENSAMEG00000010135)	KCTD16 (ENSAMEG00000010129)	PRELID2 (ENSAMEG00000004019)	GRXCR2 (ENSAMEG00000017563)	SH3RF2 (ENSAMEG00000017567)	PLAC8L1 (ENSAMEG00000017582)	LARS1 (ENSAMEG00000017584)	RBM27 (ENSAMEG00000017593) ##21	POU4F3 (ENSAMEG00000026456)	POU4F3 (ENSAMEG00000027914)	TCERG1 (ENSAMEG00000017609)
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000012721.a ##22
Common shrew	MODERN SPECIES	2116																NDFIP1 (ENSSARG00000002286) ##22
Hedgehog	MODERN SPECIES	2843																NDFIP1 (ENSEEUG00000010717) ##22
Sauria	ANCESTRAL SPECIES	17	ENSGT00390000018781	ENSGT00390000013108	ENSGT00940000156386	ENSGT00940000162679	ENSGT00940000156068	ENSGT00950000183003.a.a.a.a.b	ENSGT00940000160656	ENSGT00940000159784	ENSGT00390000004029	ENSGT00390000013467	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
Lepidosauria	ANCESTRAL SPECIES	15	ENSGT00940000156288	ENSGT00390000018781	ENSGT00940000156386	ENSGT00940000162679	ENSGT00940000156068	ENSGT00950000183003.a.a.a.a.b	ENSGT00940000160656	ENSGT00940000159784	ENSGT00390000004029	ENSGT00390000013467	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
tuatara	MODERN SPECIES	1296					KIF3A (ENSSPUG00000012135)	CCNI2 (ENSSPUG00000012158)	SEPTIN8 (ENSSPUG00000012170)	GDF9 (ENSSPUG00000012186)	UQCRQ (ENSSPUG00000012191)	LEAP2 (ENSSPUG00000012201)	AFF4 (ENSSPUG00000012215)	ZCCHC10 (ENSSPUG00000012246)	HSPA4 (ENSSPUG00000012262)	RNF14 (ENSSPUG00000012319)	GNPDA1 (ENSSPUG00000012336)	NDFIP1 (ENSSPUG00000012343) ##22	SPRY4 (ENSSPUG00000012353) ##23	FGF1 (ENSSPUG00000012364)	ARHGAP26 (ENSSPUG00000012383)	NR3C1 (ENSSPUG00000012418)
Episquamata	ANCESTRAL SPECIES	4	ENSGT00940000154155	ENSGT00940000156288	ENSGT00390000018781	ENSGT00940000156386	ENSGT00940000162679	ENSGT00940000156068	ENSGT00950000183003.a.a.a.a.b	ENSGT00940000160656	ENSGT00940000159784	ENSGT00390000013467	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
Laterata	ANCESTRAL SPECIES	1	ENSGT00940000154155	ENSGT00940000156288	ENSGT00390000018781	ENSGT00940000156386	ENSGT00940000162679	ENSGT00940000156068	ENSGT00950000183003.a.a.a.a.b	ENSGT00940000160656	ENSGT00940000159784	ENSGT00390000013467	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
Argentine black and white tegu	MODERN SPECIES	1	RAD50 (ENSSMRG00000017931)	KIF3A (ENSSMRG00000017937)	CCNI2 (ENSSMRG00000017941)	SEPTIN8 (ENSSMRG00000017956)	ENSSMRG00000017962	ENSSMRG00000017965	GDF9 (ENSSMRG00000017969)	ENSSMRG00000017971	ENSSMRG00000017973	LEAP2 (ENSSMRG00000017974)	AFF4 (ENSSMRG00000017975)	ZCCHC10 (ENSSMRG00000017981)	HSPA4 (ENSSMRG00000017982)	RNF14 (ENSSMRG00000017983)	GNPDA1 (ENSSMRG00000017984)	NDFIP1 (ENSSMRG00000017985) ##22	SPRY4 (ENSSMRG00000017986) ##23	FGF1 (ENSSMRG00000017987)	ARHGAP26 (ENSSMRG00000017990)	NR3C1 (ENSSMRG00000018001)	YIPF5 (ENSSMRG00000018010)	KCTD16 (ENSSMRG00000018011)	PRELID2 (ENSSMRG00000018026)	GRXCR2 (ENSSMRG00000018028)	SH3RF2 (ENSSMRG00000018031)	PLAC8L1 (ENSSMRG00000018033)	LARS1 (ENSSMRG00000018034)	RBM27 (ENSSMRG00000018037) ##21	POU4F3 (ENSSMRG00000018043)	TCERG1 (ENSSMRG00000018044)	GPR151 (ENSSMRG00000018046)
Common wall lizard	MODERN SPECIES	10	ENSPMRG00000011573	RAD50 (ENSPMRG00000011558)	KIF3A (ENSPMRG00000011547)	CCNI2 (ENSPMRG00000011536)	SEPTIN8 (ENSPMRG00000011522)	SOWAHA (ENSPMRG00000011515)	ENSPMRG00000011507	GDF9 (ENSPMRG00000011503)	LEAP2 (ENSPMRG00000011494)	ENSPMRG00000011489	AFF4 (ENSPMRG00000011471)	ZCCHC10 (ENSPMRG00000011467)	HSPA4 (ENSPMRG00000011460)	RNF14 (ENSPMRG00000011457)	ENSPMRG00000011453	NDFIP1 (ENSPMRG00000011446) ##22	SPRY4 (ENSPMRG00000011441) ##23	ENSPMRG00000011440	FGF1 (ENSPMRG00000011436)	ARHGAP26 (ENSPMRG00000011404)	NR3C1 (ENSPMRG00000011396)	ENSPMRG00000011394	YIPF5 (ENSPMRG00000011389)	KCTD16 (ENSPMRG00000011385)	ENSPMRG00000011383	PRELID2 (ENSPMRG00000011378)	GRXCR2 (ENSPMRG00000011374)	SH3RF2 (ENSPMRG00000011363)	PLAC8L1 (ENSPMRG00000011356)	LARS1 (ENSPMRG00000011323)	ENSPMRG00000011273 ##21
Toxicofera	ANCESTRAL SPECIES	3	ENSGT00940000154155	ENSGT00940000156288	ENSGT00390000018781	ENSGT00940000156386	ENSGT00940000162679	ENSGT00940000156068	ENSGT00950000183003.a.a.a.a.b	ENSGT00940000160656	ENSGT00940000159784	ENSGT00390000013467	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254.d	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
Lizard	MODERN SPECIES	1	ENSACAG00000012596	IRF1 (ENSACAG00000012699)	RAD50 (ENSACAG00000012723)	KIF3A (ENSACAG00000012793)	CCNI2 (ENSACAG00000029045)	ENSACAG00000035847	SEPTIN8 (ENSACAG00000012880)	ENSACAG00000041958	ENSACAG00000013046	AFF4 (ENSACAG00000022605)	ENSACAG00000013070	ENSACAG00000040566	HSPA4 (ENSACAG00000013092)	RNF14 (ENSACAG00000013340)	GNPDA1 (ENSACAG00000013374)	NDFIP1 (ENSACAG00000013413) ##22	SPRY4 (ENSACAG00000013420) ##23	FGF1 (ENSACAG00000043127)	ARHGAP26 (ENSACAG00000013456)	NR3C1 (ENSACAG00000013668)	ENSACAG00000009454	FOSL2 (ENSACAG00000009506)	ENSACAG00000044182	BABAM2 (ENSACAG00000009552)	ENSACAG00000039011	RBKS (ENSACAG00000009636)	ENSACAG00000037255	ENSACAG00000036914	SLC4A1AP (ENSACAG00000009669)	SUPT7L (ENSACAG00000009730)	ENSACAG00000043354
Elapidae	ANCESTRAL SPECIES	2	ENSGT00940000154155	ENSGT00940000156288	ENSGT00390000018781.cb	ENSGT00940000156386	ENSGT00940000162679	ENSGT00940000156068	ENSGT00950000183003.a.a.a.a.b	ENSGT00940000160656	ENSGT00940000159784	ENSGT00390000013467	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254.d	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
Indian cobra	MODERN SPECIES	1	ENSNNAG00000011330	ENSNNAG00000011415	IRF1 (ENSNNAG00000011474)	KIF3A (ENSNNAG00000011793)	ENSNNAG00000011880	ENSNNAG00000011893	SEPTIN8 (ENSNNAG00000011922)	ENSNNAG00000012277	GDF9 (ENSNNAG00000012305)	ENSNNAG00000012331	AFF4 (ENSNNAG00000012346)	ENSNNAG00000012396	HSPA4 (ENSNNAG00000012415)	RNF14 (ENSNNAG00000012441)	GNPDA1 (ENSNNAG00000012487)	NDFIP1 (ENSNNAG00000012504) ##22	SPRY4 (ENSNNAG00000012525) ##23	FGF1 (ENSNNAG00000012539)	ENSNNAG00000012564	ARHGAP26 (ENSNNAG00000012582)	NR3C1 (ENSNNAG00000012655)	YIPF5 (ENSNNAG00000012686)	ENSNNAG00000012706	PRELID2 (ENSNNAG00000012728)	GRXCR2 (ENSNNAG00000012758)	SH3RF2 (ENSNNAG00000012812)	PLAC8L1 (ENSNNAG00000012852)	LARS1 (ENSNNAG00000012866)	RBM27 (ENSNNAG00000012950) ##21	POU4F3 (ENSNNAG00000013139)	TCERG1 (ENSNNAG00000013161)
Elapidae_a	ANCESTRAL SPECIES	11	ENSGT00940000154155.wb	ENSGT00940000156288	ENSGT00390000018781.cb	ENSGT00940000156386	ENSGT00940000162679	ENSGT00940000156068	ENSGT00950000183003.a.a.a.a.b	ENSGT00940000160656	ENSGT00940000159784	ENSGT00390000013467	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254.d	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
Acanthophiinae	ANCESTRAL SPECIES	12	ENSGT00940000154155.wb	ENSGT00940000156288	ENSGT00390000018781.cb	ENSGT00940000156386	ENSGT00940000162679	ENSGT00940000156068	ENSGT00950000183003.a.a.a.a.b	ENSGT00940000160656	ENSGT00940000159784	ENSGT00390000013467	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254.d	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
Mainland tiger snake	MODERN SPECIES	4	ENSNSUG00000004635	IRF1 (ENSNSUG00000004638)	RAD50 (ENSNSUG00000004660)	KIF3A (ENSNSUG00000006210)	CCNI2 (ENSNSUG00000006302)	SEPTIN8 (ENSNSUG00000006326)	ENSNSUG00000008314	ENSNSUG00000008315	GDF9 (ENSNSUG00000008317)	ENSNSUG00000008319	AFF4 (ENSNSUG00000008322)	ZCCHC10 (ENSNSUG00000008341)	HSPA4 (ENSNSUG00000008345)	ENSNSUG00000010258	GNPDA1 (ENSNSUG00000010259)	NDFIP1 (ENSNSUG00000010260) ##22	SPRY4 (ENSNSUG00000010261) ##23	FGF1 (ENSNSUG00000010265)	ARHGAP26 (ENSNSUG00000010267)	NR3C1 (ENSNSUG00000010278)	YIPF5 (ENSNSUG00000010279)	KCTD16 (ENSNSUG00000010280)	ENSNSUG00000010281	ENSNSUG00000010282	PRELID2 (ENSNSUG00000010286)	GRXCR2 (ENSNSUG00000010291)	SH3RF2 (ENSNSUG00000010292)	PLAC8L1 (ENSNSUG00000010295)	LARS1 (ENSNSUG00000010297)	RBM27 (ENSNSUG00000010322) ##21	POU4F3 (ENSNSUG00000010325)
Eastern brown snake	MODERN SPECIES	6	ENSPTXG00000003555	IRF1 (ENSPTXG00000003549)	RAD50 (ENSPTXG00000001442)	KIF3A (ENSPTXG00000001378)	CCNI2 (ENSPTXG00000001375)	SEPTIN8 (ENSPTXG00000001367)	ENSPTXG00000001363	ENSPTXG00000001359	GDF9 (ENSPTXG00000001348)	LEAP2 (ENSPTXG00000001346)	AFF4 (ENSPTXG00000001343)	ZCCHC10 (ENSPTXG00000001340)	HSPA4 (ENSPTXG00000001337)	RNF14 (ENSPTXG00000001333)	GNPDA1 (ENSPTXG00000001329)	NDFIP1 (ENSPTXG00000001327) ##22	SPRY4 (ENSPTXG00000001326) ##23	FGF1 (ENSPTXG00000001324)	ARHGAP26 (ENSPTXG00000001239)	NR3C1 (ENSPTXG00000001219)	YIPF5 (ENSPTXG00000001213)	KCTD16 (ENSPTXG00000001211)	PRELID2 (ENSPTXG00000001206)	GRXCR2 (ENSPTXG00000001200)	SH3RF2 (ENSPTXG00000001195)	PLAC8L1 (ENSPTXG00000001191)	LARS1 (ENSPTXG00000001179)	RBM27 (ENSPTXG00000001170) ##21	POU4F3 (ENSPTXG00000001165)	TCERG1 (ENSPTXG00000001158)	GPR151 (ENSPTXG00000001150)
Blue-lipped sea krait	MODERN SPECIES	9753																NDFIP1 (ENSLLTG00000008610) ##22
Archelosauria	ANCESTRAL SPECIES	15	ENSGT00390000018781	ENSGT00390000013108	ENSGT00940000156386	ENSGT00940000162679	ENSGT00940000156068	ENSGT00950000183003.a.a.a.a.b	ENSGT00940000160656	ENSGT00940000159784	ENSGT00390000004029	ENSGT00390000013467	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
Cryptodira	ANCESTRAL SPECIES	15	ENSGT00390000018781	ENSGT00950000185731	ENSGT00940000156386	ENSGT00940000162679	ENSGT00940000156068	ENSGT00950000183003.a.a.a.a.b	ENSGT00940000160656	ENSGT00940000159784	ENSGT00390000004029	ENSGT00390000013467	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
Testudinoidea	ANCESTRAL SPECIES	5	ENSGT00390000018781	ENSGT00950000185731	ENSGT00940000156386	ENSGT00940000162679	ENSGT00940000156068	ENSGT00950000183003.a.a.a.a.b	ENSGT00940000160656	ENSGT00940000159784	ENSGT00390000004029	ENSGT00390000013467	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
Emydidae	ANCESTRAL SPECIES	11	ENSGT00390000018781	ENSGT00950000185731	ENSGT00940000156386	ENSGT00940000162679	ENSGT00940000156068	ENSGT00950000183003.a.a.a.a.b	ENSGT00940000160656	ENSGT00940000159784	ENSGT00390000004029	ENSGT00390000013467	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
painted turtle	MODERN SPECIES	761	RAD50 (ENSCPBG00000013815)	ENSCPBG00000016486	KIF3A (ENSCPBG00000016491)	CCNI2 (ENSCPBG00000016497)	SEPTIN8 (ENSCPBG00000016503)	ENSCPBG00000016512	GDF9 (ENSCPBG00000016514)	UQCRQ (ENSCPBG00000016516)	LEAP2 (ENSCPBG00000016520)	ENSCPBG00000016541	ENSCPBG00000016549	ZCCHC10 (ENSCPBG00000016553)	HSPA4 (ENSCPBG00000016557)	RNF14 (ENSCPBG00000016562)	GNPDA1 (ENSCPBG00000016567)	NDFIP1 (ENSCPBG00000016575) ##22	SPRY4 (ENSCPBG00000016578) ##23	FGF1 (ENSCPBG00000016580)	ARHGAP26 (ENSCPBG00000016598)	NR3C1 (ENSCPBG00000016629)	YIPF5 (ENSCPBG00000016635)	KCTD16 (ENSCPBG00000016637)	MCUR1 (ENSCPBG00000016640)	RANBP9 (ENSCPBG00000016684)	NOL7 (ENSCPBG00000016731)	SIRT5 (ENSCPBG00000016733)	KIF13A (ENSCPBG00000016736)	NHLRC1 (ENSCPBG00000016748)	TPMT (ENSCPBG00000016749)	KDM1B (ENSCPBG00000016750)	DEK (ENSCPBG00000016760)
Three-toed box turtle	MODERN SPECIES	306	IRF1 (ENSTMTG00000015881)	RAD50 (ENSTMTG00000014874)	KIF3A (ENSTMTG00000014795)	CCNI2 (ENSTMTG00000014786)	SEPTIN8 (ENSTMTG00000014763)	SOWAHA (ENSTMTG00000014745)	ENSTMTG00000014735	GDF9 (ENSTMTG00000014729)	UQCRQ (ENSTMTG00000014720)	LEAP2 (ENSTMTG00000017743)	AFF4 (ENSTMTG00000017703)	ENSTMTG00000017685	HSPA4 (ENSTMTG00000017638)	RNF14 (ENSTMTG00000017619)	GNPDA1 (ENSTMTG00000017607)	NDFIP1 (ENSTMTG00000017594) ##22	SPRY4 (ENSTMTG00000017587) ##23	FGF1 (ENSTMTG00000017562)	ARHGAP26 (ENSTMTG00000017093)	NR3C1 (ENSTMTG00000017032)	YIPF5 (ENSTMTG00000017013)	KCTD16 (ENSTMTG00000016998)	PRELID2 (ENSTMTG00000016972)	GRXCR2 (ENSTMTG00000016953)	SH3RF2 (ENSTMTG00000016918)	PLAC8L1 (ENSTMTG00000016879)	LARS1 (ENSTMTG00000016817)	RBM27 (ENSTMTG00000016799) ##21	POU4F3 (ENSTMTG00000016791)	TCERG1 (ENSTMTG00000016641)	GPR151 (ENSTMTG00000016627)
Testudinidae	ANCESTRAL SPECIES	16	ENSGT00390000018781	ENSGT00950000185731	ENSGT00940000156386	ENSGT00940000162679	ENSGT00940000156068	ENSGT00950000183003.a.a.a.a.b	ENSGT00940000160656	ENSGT00940000159784	ENSGT00390000004029	ENSGT00390000013467	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT01030000234518.A.a.b
Goode s thornscrub tortoise	MODERN SPECIES	22	IRF1 (ENSGEVG00005009584)	RAD50 (ENSGEVG00005009615)	KIF3A (ENSGEVG00005009678)	CCNI2 (ENSGEVG00005009749)	SEPTIN8 (ENSGEVG00005009791)	SOWAHA (ENSGEVG00005009935)	ENSGEVG00005009956	GDF9 (ENSGEVG00005010023)	UQCRQ (ENSGEVG00005010077)	LEAP2 (ENSGEVG00005010095)	AFF4 (ENSGEVG00005010126)	ZCCHC10 (ENSGEVG00005010176)	HSPA4 (ENSGEVG00005010204)	RNF14 (ENSGEVG00005010252)	GNPDA1 (ENSGEVG00005010284)	NDFIP1 (ENSGEVG00005010296) ##22	SPRY4 (ENSGEVG00005010321) ##23	FGF1 (ENSGEVG00005010339)	ARHGAP26 (ENSGEVG00005010458)	NR3C1 (ENSGEVG00005011630)	YIPF5 (ENSGEVG00005011652)	KCTD16 (ENSGEVG00005007343)	PRELID2 (ENSGEVG00005007378)	GRXCR2 (ENSGEVG00005007398)	SH3RF2 (ENSGEVG00005007423)	PLAC8L1 (ENSGEVG00005007478)	LARS1 (ENSGEVG00005007516)	RBM27 (ENSGEVG00005007644) ##21	POU4F3 (ENSGEVG00005007692)	TCERG1 (ENSGEVG00005007732)	GPR151 (ENSGEVG00005007825)
Abingdon island giant tortoise	MODERN SPECIES	2691	RAD50 (ENSCABG00000010414)	ENSCABG00000010373	KIF3A (ENSCABG00000010275)	CCNI2 (ENSCABG00000010270)	SEPTIN8 (ENSCABG00000010233)	ENSCABG00000010231	ENSCABG00000010230	GDF9 (ENSCABG00000010229)	UQCRQ (ENSCABG00000010228)	LEAP2 (ENSCABG00000010227)	AFF4 (ENSCABG00000010174)	ZCCHC10 (ENSCABG00000010169)	HSPA4 (ENSCABG00000010166)	RNF14 (ENSCABG00000010151)	GNPDA1 (ENSCABG00000010146)	NDFIP1 (ENSCABG00000010145) ##22	SPRY4 (ENSCABG00000010144) ##23	FGF1 (ENSCABG00000010142)	ARHGAP26 (ENSCABG00000010102)	NR3C1 (ENSCABG00000010099)
Chinese turtle	MODERN SPECIES	1469		ENSPSIG00000010222	IRF1 (ENSPSIG00000010399)	RAD50 (ENSPSIG00000010890)	KIF3A (ENSPSIG00000011075)	CCNI2 (ENSPSIG00000012295)	SEPTIN8 (ENSPSIG00000012411)	ENSPSIG00000012735	GDF9 (ENSPSIG00000012848)	UQCRQ (ENSPSIG00000012883)	AFF4 (ENSPSIG00000013003)	ZCCHC10 (ENSPSIG00000013016)	HSPA4 (ENSPSIG00000013077)	RNF14 (ENSPSIG00000013973)	GNPDA1 (ENSPSIG00000014040)	NDFIP1 (ENSPSIG00000014277) ##22	SPRY4 (ENSPSIG00000014328) ##23	FGF1 (ENSPSIG00000014555)	ENSPSIG00000002032	ARHGAP26 (ENSPSIG00000014722)	NR3C1 (ENSPSIG00000015245)	YIPF5 (ENSPSIG00000015511)	KCTD16 (ENSPSIG00000015569)	ENSPSIG00000002033	PRELID2 (ENSPSIG00000015571)	GRXCR2 (ENSPSIG00000015577)	SH3RF2 (ENSPSIG00000015585)	PLAC8L1 (ENSPSIG00000015635)	LARS1 (ENSPSIG00000015641)	RBM27 (ENSPSIG00000016084) ##21	POU4F3 (ENSPSIG00000016096)
Archosauria	ANCESTRAL SPECIES	17	ENSGT00390000018781	ENSGT00390000013108	ENSGT00940000156386	ENSGT00940000162679	ENSGT00940000156068	ENSGT00950000183003.a.a.a.a.b	ENSGT00940000160656	ENSGT00940000159784	ENSGT00390000004029	ENSGT00390000013467	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT00950000182864.a.b.b.a.b.a.b
Aves	ANCESTRAL SPECIES	15	ENSGT00950000185731	ENSGT00940000169911	ENSGT00940000156386	ENSGT00940000162679	ENSGT00940000156068	ENSGT00950000183003.a.a.a.a.b	ENSGT00940000160656	ENSGT00940000159784	ENSGT00390000004029	ENSGT00390000013467	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00940000160864	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT00950000182864.a.b.b.a.b.a.b
Neognathae	ANCESTRAL SPECIES	14	ENSGT00940000169911	ENSGT00390000013108.a	ENSGT00940000156386	ENSGT00940000162679	ENSGT00940000156068	ENSGT00950000183003.a.a.a.a.b	ENSGT00940000160656	ENSGT00940000159784	ENSGT00390000004029	ENSGT00390000013467	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT00960000189397
Galloanserae	ANCESTRAL SPECIES	14	ENSGT00940000169911	ENSGT00390000013108.a	ENSGT00940000156386	ENSGT00940000162679	ENSGT00940000156068	ENSGT00950000183003.a.a.a.a.b	ENSGT00940000160656	ENSGT00940000159784	ENSGT00390000004029	ENSGT00390000013467	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT00960000189397
Anatidae	ANCESTRAL SPECIES	15	ENSGT00390000013108.b	ENSGT00940000169911	ENSGT00940000156386	ENSGT00940000162679	ENSGT00940000156068	ENSGT00950000183003.a.a.a.a.b	ENSGT00940000160656	ENSGT00940000159784	ENSGT00390000004029	ENSGT00390000013467	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT00940000158185
Pink-footed goose	MODERN SPECIES	9	ENSABRG00000016288	KIF3A (ENSABRG00000016291)	CCNI2 (ENSABRG00000016299)	ENSABRG00000016303	ENSABRG00000016309	SOWAHA (ENSABRG00000016319)	ENSABRG00000016326	GDF9 (ENSABRG00000016331)	UQCRQ (ENSABRG00000016335)	LEAP2 (ENSABRG00000016336)	AFF4 (ENSABRG00000016343)	ENSABRG00000016355	HSPA4 (ENSABRG00000016359)	RNF14 (ENSABRG00000016367)	GNPDA1 (ENSABRG00000016368)	NDFIP1 (ENSABRG00000016372) ##22	SPRY4 (ENSABRG00000016376) ##23	FGF1 (ENSABRG00000016381)	ARHGAP26 (ENSABRG00000016387)	NR3C1 (ENSABRG00000016405)	YIPF5 (ENSABRG00000016411)	KCTD16 (ENSABRG00000016415)	PRELID2 (ENSABRG00000016427)	GRXCR2 (ENSABRG00000016433)	SH3RF2 (ENSABRG00000016435)	LARS1 (ENSABRG00000016441)	RBM27 (ENSABRG00000016473) ##21	POU4F3 (ENSABRG00000016484)	TCERG1 (ENSABRG00000016542)	PPP2R2B (ENSABRG00000016796)	STK32A (ENSABRG00000016811)
Duck	MODERN SPECIES	5	ENSAPLG00000019991	RAD50 (ENSAPLG00000011856)	ENSAPLG00000011854	KIF3A (ENSAPLG00000011529)	CCNI2 (ENSAPLG00000011517)	SEPTIN8 (ENSAPLG00000011252)	SOWAHA (ENSAPLG00000021650)	ENSAPLG00000018974	GDF9 (ENSAPLG00000011242)	AFF4 (ENSAPLG00000011166)	LEAP2 (ENSAPLG00000011235)	ZCCHC10 (ENSAPLG00000002623)	HSPA4 (ENSAPLG00000002687)	RNF14 (ENSAPLG00000003900)	GNPDA1 (ENSAPLG00000004003)	NDFIP1 (ENSAPLG00000004156) ##22	SPRY4 (ENSAPLG00000001658) ##23	FGF1 (ENSAPLG00000006784)	ARHGAP26 (ENSAPLG00000006831)	NR3C1 (ENSAPLG00000007318)	YIPF5 (ENSAPLG00000007623)	KCTD16 (ENSAPLG00000018353)	PRELID2 (ENSAPLG00000007685)	GRXCR2 (ENSAPLG00000026893)	ENSAPLG00000027135	ENSAPLG00000018144	LARS1 (ENSAPLG00000008145)	RBM27 (ENSAPLG00000009309) ##21	TCERG1 (ENSAPLG00000009432)	PPP2R2B (ENSAPLG00000009636)	STK32A (ENSAPLG00000009674)
Phasianidae	ANCESTRAL SPECIES	14	ENSGT00390000013108.b	ENSGT00390000013108.a	ENSGT00940000156386	ENSGT00940000162679	ENSGT00940000156068	ENSGT00950000183003.a.a.a.a.b	ENSGT00940000160656	ENSGT00940000159784	ENSGT00390000004029	ENSGT00390000013467	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00940000158849	ENSGT00940000160067	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT00960000189397	ENSGT00940000158185
Phasianidae_b	ANCESTRAL SPECIES	18	ENSGT00390000013108.b	ENSGT00390000013108.a	ENSGT00940000156386	ENSGT00940000162679	ENSGT00940000156068	ENSGT00950000183003.a.a.a.a.b	ENSGT00940000160656	ENSGT00940000159784	ENSGT00390000004029	ENSGT00390000013467	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557.a	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00940000158849	ENSGT00940000160067	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT00940000158185	ENSGT01030000234527.A.a.b.b.a
Chicken	MODERN SPECIES	4	IL13 (ENSGALG00010016321)	IL4 (ENSGALG00010016327)	KIF3A (ENSGALG00010016366)	CCNI2 (ENSGALG00010016375)	SEPTIN8 (ENSGALG00010016402)	SOWAHA (ENSGALG00010013667)	ENSGALG00010013672	GDF9 (ENSGALG00010013676)	UQCRQ (ENSGALG00010013686)	LEAP2 (ENSGALG00010013704)	AFF4 (ENSGALG00010013737)	ZCCHC10 (ENSGALG00010013787)	HSPA4 (ENSGALG00010013805)	RNF14 (ENSGALG00010013286)	GNPDA1 (ENSGALG00010013300)	NDFIP1 (ENSGALG00010013353) ##22	SPRY4 (ENSGALG00010013372) ##23	FGF1 (ENSGALG00010013399)	ARHGAP26 (ENSGALG00010016732)	NR3C1 (ENSGALG00010016758)	YIPF5 (ENSGALG00010016502)	KCTD16 (ENSGALG00010016505)	GRXCR2 (ENSGALG00010016621)	SH3RF2 (ENSGALG00010016627)	LARS1 (ENSGALG00010016629)	RBM27 (ENSGALG00010016455) ##21	POU4F3 (ENSGALG00010012802)	TCERG1 (ENSGALG00010013831)	PPP2R2B (ENSGALG00010013921)	STK32A (ENSGALG00010013959)	DPYSL3 (ENSGALG00010014018)
Turkey	MODERN SPECIES	6	PPP2R2B (ENSMGAG00000009518)	ENSMGAG00000009486	ENSMGAG00000009467 ##21	ENSMGAG00000009388	ENSMGAG00000021424	ENSMGAG00000009376	ENSMGAG00000009371	ENSMGAG00000009360	ENSMGAG00000020001	ENSMGAG00000009322	ENSMGAG00000009299	ENSMGAG00000021682	ENSMGAG00000015458	ENSMGAG00000020424	ENSMGAG00000009144	NDFIP1 (ENSMGAG00000009275) ##22	ENSMGAG00000009253	ENSMGAG00000009266	ENSMGAG00000009184	ENSMGAG00000020532	ENSMGAG00000008958	ENSMGAG00000009121	UQCRQ (ENSMGAG00000009135)	ENSMGAG00000009138	ENSMGAG00000009075	ENSMGAG00000009086	ENSMGAG00000008972	ENSMGAG00000009008	ENSMGAG00000009019	KIF3A (ENSMGAG00000009022)	ENSMGAG00000008970
Japanese quail	MODERN SPECIES	4	ENSCJPG00005020983	IRF1 (ENSCJPG00005020982)	ENSCJPG00005020981	RAD50 (ENSCJPG00005020980)	ENSCJPG00005020979	IL4 (ENSCJPG00005020978)	KIF3A (ENSCJPG00005020977)	CCNI2 (ENSCJPG00005020976)	SEPTIN8 (ENSCJPG00005020911)	SOWAHA (ENSCJPG00005020906)	ENSCJPG00005020905	ZCCHC10 (ENSCJPG00005020904)	HSPA4 (ENSCJPG00005020903)	RNF14 (ENSCJPG00005020902)	GNPDA1 (ENSCJPG00005020901)	NDFIP1 (ENSCJPG00005020900) ##22	SPRY4 (ENSCJPG00005020899) ##23	FGF1 (ENSCJPG00005020897)	ARHGAP26 (ENSCJPG00005020896)	NR3C1 (ENSCJPG00005020895)	YIPF5 (ENSCJPG00005020893)	KCTD16 (ENSCJPG00005020892)	GRXCR2 (ENSCJPG00005020889)	SH3RF2 (ENSCJPG00005020888)	LARS1 (ENSCJPG00005020887)	RBM27 (ENSCJPG00005020886) ##21	POU4F3 (ENSCJPG00005020885)	TCERG1 (ENSCJPG00005020884)	PPP2R2B (ENSCJPG00005020883)	ENSCJPG00005020882	STK32A (ENSCJPG00005020881)
Neognathae_b	ANCESTRAL SPECIES	16	ENSGT00390000013108.b	ENSGT00940000169911	ENSGT00940000156386	ENSGT00940000162679	ENSGT00940000156068	ENSGT00950000183003.a.a.a.a.b	ENSGT00940000160656	ENSGT00940000159784	ENSGT00390000004029	ENSGT00390000013467	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT00960000189397
Passeriformes	ANCESTRAL SPECIES	14	ENSGT00960000189299	ENSGT00390000012630.A	ENSGT00940000156944	ENSGT00940000157213	ENSGT00940000157692	ENSGT00940000157139	ENSGT00940000159591	ENSGT00940000159784	ENSGT00390000004029	ENSGT00390000013467	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00940000158849	ENSGT00940000160067	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT00940000158185	ENSGT01030000234527.A.a.b.b.a
Passeriformes_d	ANCESTRAL SPECIES	15	ENSGT00960000189299	ENSGT00390000012630.A	ENSGT00940000156944	ENSGT00940000157213	ENSGT00940000157692	ENSGT00940000157139	ENSGT00940000159591	ENSGT00940000159784	ENSGT00390000004029	ENSGT00390000013467	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00940000158849	ENSGT00940000160067	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT00940000158185	ENSGT01030000234527.A.a.b.b.a
Passeriformes_g	ANCESTRAL SPECIES	15	ENSGT00960000189299	ENSGT00390000012630.A	ENSGT00940000156944	ENSGT00940000157213	ENSGT00940000157692	ENSGT00940000157139	ENSGT00940000159591	ENSGT00940000159784	ENSGT00390000004029	ENSGT00390000013467	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00940000158849	ENSGT00940000160067	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT00940000158185	ENSGT01030000234527.A.a.b.b.a
Passeroidea	ANCESTRAL SPECIES	15	ENSGT00960000189299	ENSGT00390000012630.A	ENSGT00940000156944	ENSGT00940000157213	ENSGT00940000157692	ENSGT00940000157139	ENSGT00940000159591	ENSGT00940000159784	ENSGT00390000004029	ENSGT00390000013467	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00940000158849	ENSGT00940000160067	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT00940000158185	ENSGT01030000234527.A.a.b.b.a
Common canary	MODERN SPECIES	16	ENSSCAG00000001607	IL12B (ENSSCAG00000001611)	ADRA1B (ENSSCAG00000001616)	TTC1 (ENSSCAG00000001618)	ENSSCAG00000001622	FABP6 (ENSSCAG00000001624)	C1QTNF2 (ENSSCAG00000001626)	GDF9 (ENSSCAG00000001629)	UQCRQ (ENSSCAG00000001631)	LEAP2 (ENSSCAG00000001633)	AFF4 (ENSSCAG00000001639)	ZCCHC10 (ENSSCAG00000001651)	HSPA4 (ENSSCAG00000001655)	RNF14 (ENSSCAG00000001663)	GNPDA1 (ENSSCAG00000001670)	NDFIP1 (ENSSCAG00000001675) ##22	ENSSCAG00000001678	SPRY4 (ENSSCAG00000001683) ##23	FGF1 (ENSSCAG00000001687)	ARHGAP26 (ENSSCAG00000001740)	NR3C1 (ENSSCAG00000001943)	YIPF5 (ENSSCAG00000001957)	KCTD16 (ENSSCAG00000001982)	GRXCR2 (ENSSCAG00000001985)	SH3RF2 (ENSSCAG00000001989)	LARS1 (ENSSCAG00000001997)	RBM27 (ENSSCAG00000002005) ##21	TCERG1 (ENSSCAG00000002030)	PPP2R2B (ENSSCAG00000002181)	STK32A (ENSSCAG00000002196)	DPYSL3 (ENSSCAG00000002340)
Medium ground finch	MODERN SPECIES	11	FBXO38 (ENSGFOG00000010861)	IL12B (ENSGFOG00000010875)	ADRA1B (ENSGFOG00000010887)	TTC1 (ENSGFOG00000010891)	ENSGFOG00000010897	FABP6 (ENSGFOG00000010902)	C1QTNF2 (ENSGFOG00000010908)	GDF9 (ENSGFOG00000010909)	UQCRQ (ENSGFOG00000010914)	LEAP2 (ENSGFOG00000010917)	AFF4 (ENSGFOG00000010926)	ZCCHC10 (ENSGFOG00000010934)	HSPA4 (ENSGFOG00000010956)	RNF14 (ENSGFOG00000011088)	GNPDA1 (ENSGFOG00000011095)	NDFIP1 (ENSGFOG00000011111) ##22	SPRY4 (ENSGFOG00000011125) ##23	FGF1 (ENSGFOG00000011129)	ARHGAP26 (ENSGFOG00000011185)	NR3C1 (ENSGFOG00000012374)	ENSGFOG00000012377	YIPF5 (ENSGFOG00000012382)	KCTD16 (ENSGFOG00000012386)	SH3RF2 (ENSGFOG00000012390)	LARS1 (ENSGFOG00000012398)	RBM27 (ENSGFOG00000012416) ##21	TCERG1 (ENSGFOG00000012423)	PPP2R2B (ENSGFOG00000012431)	STK32A (ENSGFOG00000012445)	DPYSL3 (ENSGFOG00000012509)	JAKMIP2 (ENSGFOG00000012513)
Flycatcher	MODERN SPECIES	4	ENSFALG00000027878	IL12B (ENSFALG00000008882)	ADRA1B (ENSFALG00000008888)	TTC1 (ENSFALG00000008895)	ENSFALG00000028176	FABP6 (ENSFALG00000008903)	C1QTNF2 (ENSFALG00000008905)	GDF9 (ENSFALG00000022963)	UQCRQ (ENSFALG00000008909)	ENSFALG00000008912	AFF4 (ENSFALG00000008916)	ZCCHC10 (ENSFALG00000008933)	HSPA4 (ENSFALG00000008937)	RNF14 (ENSFALG00000008942)	GNPDA1 (ENSFALG00000026643)	NDFIP1 (ENSFALG00000008949) ##22	SPRY4 (ENSFALG00000014442) ##23	FGF1 (ENSFALG00000023468)	ENSFALG00000027468	ENSFALG00000027108	ARHGAP26 (ENSFALG00000008956)	NR3C1 (ENSFALG00000008958)	YIPF5 (ENSFALG00000008960)	KCTD16 (ENSFALG00000008962)	ENSFALG00000024254
Great tit	MODERN SPECIES	4	IL12B (ENSPMJG00000006319)	ADRA1B (ENSPMJG00000006317)	TTC1 (ENSPMJG00000006315)	ENSPMJG00000006314	FABP6 (ENSPMJG00000006313)	ENSPMJG00000006312	C1QTNF2 (ENSPMJG00000006311)	GDF9 (ENSPMJG00000006310)	UQCRQ (ENSPMJG00000006309)	LEAP2 (ENSPMJG00000006308)	AFF4 (ENSPMJG00000006302)	ZCCHC10 (ENSPMJG00000006296)	HSPA4 (ENSPMJG00000006292)	RNF14 (ENSPMJG00000006287)	GNPDA1 (ENSPMJG00000006283)	NDFIP1 (ENSPMJG00000006281) ##22	SPRY4 (ENSPMJG00000006278) ##23	FGF1 (ENSPMJG00000006268)	ARHGAP26 (ENSPMJG00000006253)	NR3C1 (ENSPMJG00000006249)	YIPF5 (ENSPMJG00000006237)	KCTD16 (ENSPMJG00000006234)	GRXCR2 (ENSPMJG00000006226)	SH3RF2 (ENSPMJG00000006225)	LARS1 (ENSPMJG00000006220)	RBM27 (ENSPMJG00000006134) ##21	ENSPMJG00000006133	TCERG1 (ENSPMJG00000006127)	PPP2R2B (ENSPMJG00000006119)	STK32A (ENSPMJG00000006112)	DPYSL3 (ENSPMJG00000006102)
Neognathae_c	ANCESTRAL SPECIES	19	ENSGT00390000013108.b	ENSGT00940000169911	ENSGT00940000156386	ENSGT00940000162679	ENSGT00940000156068	ENSGT00950000183003.a.a.a.a.b	ENSGT00940000160656	ENSGT00940000159784	ENSGT00390000004029	ENSGT00390000013467	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000156067	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557	ENSGT00940000157254	ENSGT00940000156385	ENSGT00940000153168.C.a.a	ENSGT00940000156071	ENSGT00950000182810.A.b	ENSGT00940000158849	ENSGT00940000160067	ENSGT00390000012163	ENSGT00510000046929.b ##21	ENSGT00940000160880	ENSGT00940000157770	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT00960000189397
Kakapo	MODERN SPECIES	6	ENSSHBG00005005583	KIF3A (ENSSHBG00005005551)	CCNI2 (ENSSHBG00005005523)	SEPTIN8 (ENSSHBG00005005487)	SOWAHA (ENSSHBG00005005463)	ENSSHBG00005005441	GDF9 (ENSSHBG00005005427)	LEAP2 (ENSSHBG00005005414)	UQCRQ (ENSSHBG00005005393)	ENSSHBG00005005356	ENSSHBG00005005338	ZCCHC10 (ENSSHBG00005005326)	HSPA4 (ENSSHBG00005016917)	RNF14 (ENSSHBG00005016911)	GNPDA1 (ENSSHBG00005016903)	NDFIP1 (ENSSHBG00005016895) ##22	SPRY4 (ENSSHBG00005016889) ##23	FGF1 (ENSSHBG00005016881)	ARHGAP26 (ENSSHBG00005016872)	NR3C1 (ENSSHBG00005016857)	YIPF5 (ENSSHBG00005016851)	KCTD16 (ENSSHBG00005016843)	GRXCR2 (ENSSHBG00005016839)	SH3RF2 (ENSSHBG00005016833)	LARS1 (ENSSHBG00005016824)	RBM27 (ENSSHBG00005016802) ##21	POU4F3 (ENSSHBG00005016782)	TCERG1 (ENSSHBG00005016771)	PPP2R2B (ENSSHBG00005016757)	ENSSHBG00005016747	STK32A (ENSSHBG00005016739)
Golden eagle	MODERN SPECIES	14	RAD50 (ENSACCG00020013607)	ENSACCG00020013651	ENSACCG00020013670	KIF3A (ENSACCG00020013769)	CCNI2 (ENSACCG00020013805)	SEPTIN8 (ENSACCG00020013837)	ENSACCG00020013860	GDF9 (ENSACCG00020013877)	UQCRQ (ENSACCG00020013890)	LEAP2 (ENSACCG00020013901)	AFF4 (ENSACCG00020013926)	ZCCHC10 (ENSACCG00020013952)	HSPA4 (ENSACCG00020013986)	RNF14 (ENSACCG00020014027)	GNPDA1 (ENSACCG00020014051)	NDFIP1 (ENSACCG00020014064) ##22	SPRY4 (ENSACCG00020014075) ##23	FGF1 (ENSACCG00020014084)	ARHGAP26 (ENSACCG00020014129)	NR3C1 (ENSACCG00020014204)	YIPF5 (ENSACCG00020014229)	KCTD16 (ENSACCG00020014252)	PRELID2 (ENSACCG00020014265)	GRXCR2 (ENSACCG00020014284)	SH3RF2 (ENSACCG00020014303)	LARS1 (ENSACCG00020014331)	RBM27 (ENSACCG00020014416) ##21	POU4F3 (ENSACCG00020014472)	TCERG1 (ENSACCG00020014501)	PPP2R2B (ENSACCG00020014547)	STK32A (ENSACCG00020014583)
African ostrich	MODERN SPECIES	182	ENSSCUG00000002306	RAD50 (ENSSCUG00000002300)	ENSSCUG00000002296	ENSSCUG00000002294	KIF3A (ENSSCUG00000002290)	CCNI2 (ENSSCUG00000002286)	SEPTIN8 (ENSSCUG00000002282)	ENSSCUG00000002276	GDF9 (ENSSCUG00000002275)	LEAP2 (ENSSCUG00000002274)	AFF4 (ENSSCUG00000002271)	ZCCHC10 (ENSSCUG00000002270)	HSPA4 (ENSSCUG00000002258)	RNF14 (ENSSCUG00000002246)	GNPDA1 (ENSSCUG00000002243)	NDFIP1 (ENSSCUG00000002238) ##22	ENSSCUG00000002235	ARHGAP26 (ENSSCUG00000002219)	NR3C1 (ENSSCUG00000002211)	YIPF5 (ENSSCUG00000002202)	KCTD16 (ENSSCUG00000002200)	GRXCR2 (ENSSCUG00000002193)	SH3RF2 (ENSSCUG00000002191)	PLAC8L1 (ENSSCUG00000002190)	LARS1 (ENSSCUG00000002187)	RBM27 (ENSSCUG00000002180) ##21	ENSSCUG00000002154	PPP2R2B (ENSSCUG00000002138)	ENSSCUG00000002133	STK32A (ENSSCUG00000002128)	DPYSL3 (ENSSCUG00000002126)
Australian saltwater crocodile	MODERN SPECIES	34	ENSCPRG00005009369	RAD50 (ENSCPRG00005008628)	ENSCPRG00005008547	KIF3A (ENSCPRG00005008523)	CCNI2 (ENSCPRG00005008513)	SEPTIN8 (ENSCPRG00005008502)	ENSCPRG00005008491	GDF9 (ENSCPRG00005008485)	ENSCPRG00005008482	LEAP2 (ENSCPRG00005008479)	AFF4 (ENSCPRG00005008462)	ZCCHC10 (ENSCPRG00005008454)	HSPA4 (ENSCPRG00005008425)	RNF14 (ENSCPRG00005008410)	GNPDA1 (ENSCPRG00005008400)	NDFIP1 (ENSCPRG00005008386) ##22	SPRY4 (ENSCPRG00005008382) ##23	FGF1 (ENSCPRG00005008365)	ARHGAP26 (ENSCPRG00005008337)	NR3C1 (ENSCPRG00005008298)	YIPF5 (ENSCPRG00005008278)	KCTD16 (ENSCPRG00005008265)	PRELID2 (ENSCPRG00005008250)	GRXCR2 (ENSCPRG00005008246)	SH3RF2 (ENSCPRG00005008214)	PLAC8L1 (ENSCPRG00005008208)	LARS1 (ENSCPRG00005008167)	RBM27 (ENSCPRG00005008156) ##21	POU4F3 (ENSCPRG00005008153)	TCERG1 (ENSCPRG00005008131)	PPP2R2B (ENSCPRG00005008119)
Anura	ANCESTRAL SPECIES	198			ENSGT00940000162679	ENSGT00940000156068	ENSGT00950000183003.a.a.a.a.b	ENSGT00940000160656	ENSGT00940000159784	ENSGT00390000004029	ENSGT00390000013467	ENSGT00950000182974.a.a.b	ENSGT00730000111200	ENSGT00940000168656	ENSGT00940000156067	ENSGT00940000154507	ENSGT00390000014316.c.b	ENSGT00390000012721.a ##22	ENSGT00950000183055.b.b ##23	ENSGT00940000160557
Leishan spiny toad	MODERN SPECIES	6	ENSLLEG00000023452	ENSLLEG00000023483	CCNI2 (ENSLLEG00000023745)	SEPTIN8 (ENSLLEG00000023850)	SOWAHA (ENSLLEG00000024323)	ENSLLEG00000024367	GDF9 (ENSLLEG00000024479)	HSPA4 (ENSLLEG00000024564)	ENSLLEG00000024876	ENSLLEG00000025349	ENSLLEG00000025470	ENSLLEG00000025952	ENSLLEG00000025971	ENSLLEG00000025992	ENSLLEG00000026010	NDFIP1 (ENSLLEG00000026180) ##22	ENSLLEG00000026406	SPRY4 (ENSLLEG00000026447) ##23	ENSLLEG00000026476	FGF1 (ENSLLEG00000026504)	ZCCHC10 (ENSLLEG00000026584)	AFF4 (ENSLLEG00000026639)	UQCRQ (ENSLLEG00000026932)	ENSLLEG00000026966	ARHGAP26 (ENSLLEG00000027080)	ENSLLEG00000027950	ENSLLEG00000027968	ENSLLEG00000027998	NR3C1 (ENSLLEG00000028062)	ENSLLEG00000028127	ENSLLEG00000028137
Frog	MODERN SPECIES	3	shroom1 (ENSXETG00000004167)	sowaha (ENSXETG00000004166)	ENSXETG00000049106	gdf9 (ENSXETG00000004168)	uqcrq (ENSXETG00000027128)	ENSXETG00000048896	leap2 (ENSXETG00000030080)	aff4 (ENSXETG00000004169)	zcchc10 (ENSXETG00000004171)	hspa4 (ENSXETG00000027138)	gnpda1 (ENSXETG00000004172)	rnf14.4 (ENSXETG00000027144)	ENSXETG00000034756	ENSXETG00000040540	rnf14.3 (ENSXETG00000027142)	ndfip1 (ENSXETG00000019569) ##22	spry4 (ENSXETG00000019568) ##23	fgf1 (ENSXETG00000019566)	ENSXETG00000041763	rad50 (ENSXETG00000006986)	p4ha2 (ENSXETG00000006987)	rnf14.2 (ENSXETG00000025273)	pdlim4 (ENSXETG00000016579)	slc22a5 (ENSXETG00000016581)	slc22a4 (ENSXETG00000016584)	irf1 (ENSXETG00000016586)	acsl6 (ENSXETG00000016588)	fnip1 (ENSXETG00000016597)	ENSXETG00000043451	ENSXETG00000037246	tgfbi (ENSXETG00000015068)
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00390000012721 #22
Hagfish	MODERN SPECIES	30																ndfip1 (ENSEBUG00000013365) #22	ENSEBUG00000006023	ENSEBUG00000005193	mtmr2 (ENSEBUG00000002250)	ENSEBUG00000010704