Murinae	ANCESTRAL SPECIES	16	ENSGT00940000158486	ENSGT00390000018369 #7	ENSGT00940000154925.d.d #8	ENSGT00950000183159.b #10	ENSGT00940000161074.a #11	ENSGT00390000015700.a #12	ENSGT00390000010065 #13	ENSGT00940000159395 #14	ENSGT00940000155756 #15	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #26	ENSGT00940000160718 #27	ENSGT00940000158453.a #28	ENSGT01050000244955.a.a #29	ENSGT01050000244897.a.b.b.b #30	ENSGT00940000156856 #31	ENSGT00940000159196 #32	ENSGT00940000153981.A #33	ENSGT00940000162795 #34	ENSGT00940000153931.b #35	ENSGT00940000155232 #36	ENSGT00940000156862.c #37	ENSGT00940000159806	ENSGT00390000004600.b.b
Mus	ANCESTRAL SPECIES	8	ENSGT00390000018369 #7	ENSGT00940000154925.d.d #8	ENSGT00860000135993 #9	ENSGT00950000183159.b #10	ENSGT00940000161074.a #11	ENSGT00390000015700.a #12	ENSGT00390000010065 #13	ENSGT00940000159395 #14	ENSGT00940000155756 #15	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00900000143753 #24	ENSGT00940000159810 #26	ENSGT00940000160718 #27	ENSGT00940000158453.a #28	ENSGT01050000244955.a.a #29	ENSGT01050000244897.a.b.b.b #30	ENSGT00940000156856 #31	ENSGT00940000159196 #32	ENSGT00940000153981.A #33	ENSGT00940000162795 #34	ENSGT00940000153931.b #35	ENSGT00940000155232 #36	ENSGT00940000156862.c #37	ENSGT00940000159806
Shrew mouse	MODERN SPECIES	21	Commd6 (MGP_PahariEiJ_G0030583) #7	MGP_PahariEiJ_G0030584 #8	MGP_PahariEiJ_G0030585 #9	Lmo7 (MGP_PahariEiJ_G0030586) #10	Kctd12 (MGP_PahariEiJ_G0030587) #11	Acod1 (MGP_PahariEiJ_G0030588) #12	Cln5 (MGP_PahariEiJ_G0030589) #13	Fbxl3 (MGP_PahariEiJ_G0030590) #14	Mycbp2 (MGP_PahariEiJ_G0030591) #15	Scel (MGP_PahariEiJ_G0030592) #16	Slain1 (MGP_PahariEiJ_G0030593) #17	Ednrb (MGP_PahariEiJ_G0030594) #18	Pou4f1 (MGP_PahariEiJ_G0030595) #19	Obi1 (MGP_PahariEiJ_G0030596) #20	Rbm26 (MGP_PahariEiJ_G0030597) #21	Ndfip2 (MGP_PahariEiJ_G0030598) #22	Spry2 (MGP_PahariEiJ_G0030599) #23	MGP_PahariEiJ_G0030600 #24	Trim52 (MGP_PahariEiJ_G0030601) #25	Slitrk1 (MGP_PahariEiJ_G0030602) #26	Slitrk6 (MGP_PahariEiJ_G0030603) #27	Slitrk5 (MGP_PahariEiJ_G0030604) #28	Gpc5 (MGP_PahariEiJ_G0030605) #29	Gpc6 (MGP_PahariEiJ_G0030606) #30	Dct (MGP_PahariEiJ_G0030607) #31	Tgds (MGP_PahariEiJ_G0030608) #32	Gpr180 (MGP_PahariEiJ_G0030609) #33	Sox21 (MGP_PahariEiJ_G0030610) #34	Abcc4 (MGP_PahariEiJ_G0030611) #35	Cldn10 (MGP_PahariEiJ_G0030612) #36	Dzip1 (MGP_PahariEiJ_G0030613) #37
Mus_A	ANCESTRAL SPECIES	12	ENSGT00390000018369 #7	ENSGT00940000154925.d.d #8	ENSGT00860000135993 #9	ENSGT00950000183159.b #10	ENSGT00940000161074.a #11	ENSGT00390000015700.a #12	ENSGT00390000010065 #13	ENSGT00940000159395 #14	ENSGT00940000155756 #15	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00900000143753 #24	ENSGT00940000159810 #26	ENSGT00940000160718 #27	ENSGT00940000158453.a #28	ENSGT01050000244955.a.a #29	ENSGT01050000244897.a.b.b.b #30	ENSGT00940000156856 #31	ENSGT00940000159196 #32	ENSGT00940000153981.A #33	ENSGT00940000162795 #34	ENSGT00940000153931.b #35	ENSGT00940000155232 #36	ENSGT00940000156862.c #37	ENSGT00940000159806
Mus_B	ANCESTRAL SPECIES	11	ENSGT00390000018369 #7	ENSGT00940000154925.d.d #8	ENSGT00860000135993 #9	ENSGT00950000183159.b #10	ENSGT00940000161074.a #11	ENSGT00390000015700.a #12	ENSGT00390000010065 #13	ENSGT00940000159395 #14	ENSGT00940000155756 #15	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00940000159810 #26	ENSGT00940000160718 #27	ENSGT00940000158453.a #28	ENSGT01050000244955.a.a #29	ENSGT01050000244897.a.b.b.b #30	ENSGT00940000156856 #31	ENSGT00940000159196 #32	ENSGT00940000153981.A #33	ENSGT00940000162795 #34	ENSGT00940000153931.b #35	ENSGT00940000155232 #36	ENSGT00940000156862.c #37	ENSGT00940000159806	ENSGT00390000004600.b.b
Mouse	MODERN SPECIES	5	Tbc1d4 (ENSMUSG00000033083)	Commd6 (ENSMUSG00000075486) #7	Uchl3 (ENSMUSG00000022111) #8	Lmo7 (ENSMUSG00000033060) #10	Kctd12 (ENSMUSG00000098557) #11	Acod1 (ENSMUSG00000022126) #12	Cln5 (ENSMUSG00000022125) #13	Fbxl3 (ENSMUSG00000022124) #14	Mycbp2 (ENSMUSG00000033004) #15	Scel (ENSMUSG00000022123) #16	Slain1 (ENSMUSG00000055717) #17	Ednrb (ENSMUSG00000022122) #18	Pou4f1 (ENSMUSG00000048349) #19	Obi1 (ENSMUSG00000022120) #20	Rbm26 (ENSMUSG00000022119) #21	Ndfip2 (ENSMUSG00000053253) #22	Spry2 (ENSMUSG00000022114) #23	Trim52 (ENSMUSG00000022113) #25	Slitrk1 (ENSMUSG00000075478) #26	Slitrk6 (ENSMUSG00000045871) #27	Slitrk5 (ENSMUSG00000033214) #28	Tpm3-rs7 (ENSMUSG00000058126)	Gpc5 (ENSMUSG00000022112) #29	Gpc6 (ENSMUSG00000058571) #30	Dct (ENSMUSG00000022129) #31	Tgds (ENSMUSG00000022130) #32	Gpr180 (ENSMUSG00000022131) #33	Sox21 (ENSMUSG00000061517) #34	Gm9376 (ENSMUSG00000092109)	Abcc4 (ENSMUSG00000032849) #35	Cldn10 (ENSMUSG00000022132) #36
Mus_C	ANCESTRAL SPECIES	20	ENSGT00390000018369 #7	ENSGT00940000154925.d.d #8	ENSGT00860000135993 #9	ENSGT00950000183159.b #10	ENSGT00940000161074.a #11	ENSGT00390000015700.a #12	ENSGT00390000010065 #13	ENSGT00940000159395 #14	ENSGT00940000155756 #15	ENSGT00530000063872.B #16	ENSGT00390000017860.a.b #17	ENSGT01100000263512.a.a.a.b #18	ENSGT00940000162154 #19	ENSGT00390000013512 #20	ENSGT00510000046929.a #21	ENSGT00390000012721.b #22	ENSGT00950000183055.a.a #23	ENSGT00390000000475.sb.bc.a	ENSGT00940000159810 #26	ENSGT00940000160718 #27	ENSGT00940000158453.a #28	ENSGT01050000244955.a.a #29	ENSGT01050000244897.a.b.b.b #30	ENSGT00940000156856 #31	ENSGT00940000159196 #32	ENSGT00940000153981.A #33	ENSGT00940000162795 #34	ENSGT00940000153931.b #35	ENSGT00940000155232 #36	ENSGT00940000156862.c #37	ENSGT00940000159806
Steppe mouse	MODERN SPECIES	2960															Rbm26 (ENSMSIG00000029562) #21	Ndfip2 (ENSMSIG00000029710) #22	ENSMSIG00000029724	Spry2 (ENSMSIG00000029732) #23	ENSMSIG00000029733	Trim52 (ENSMSIG00000029735) #25
spretus	MODERN SPECIES	5	Commd6 (MGP_SPRETEiJ_G0020462) #7	MGP_SPRETEiJ_G0020463 #8	MGP_SPRETEiJ_G0020464 #9	Lmo7 (MGP_SPRETEiJ_G0020465) #10	Kctd12 (MGP_SPRETEiJ_G0020466) #11	Acod1 (MGP_SPRETEiJ_G0020467) #12	Cln5 (MGP_SPRETEiJ_G0020468) #13	Fbxl3 (MGP_SPRETEiJ_G0020469) #14	Mycbp2 (MGP_SPRETEiJ_G0020470) #15	Scel (MGP_SPRETEiJ_G0020471) #16	Slain1 (MGP_SPRETEiJ_G0020472) #17	Ednrb (MGP_SPRETEiJ_G0020473) #18	MGP_SPRETEiJ_G0020474 #19	Obi1 (MGP_SPRETEiJ_G0020475) #20	Rbm26 (MGP_SPRETEiJ_G0020476) #21	Ndfip2 (MGP_SPRETEiJ_G0020477) #22	Spry2 (MGP_SPRETEiJ_G0020478) #23	MGP_SPRETEiJ_G0020479	Trim52 (MGP_SPRETEiJ_G0020480) #25	Slitrk1 (MGP_SPRETEiJ_G0020481) #26	MGP_SPRETEiJ_G0020482	Slitrk6 (MGP_SPRETEiJ_G0020483) #27	Slitrk5 (MGP_SPRETEiJ_G0020484) #28	Gpc5 (MGP_SPRETEiJ_G0020485) #29	Gpc6 (MGP_SPRETEiJ_G0020486) #30	Dct (MGP_SPRETEiJ_G0020487) #31	Tgds (MGP_SPRETEiJ_G0020488) #32	Gpr180 (MGP_SPRETEiJ_G0020489) #33	Sox21 (MGP_SPRETEiJ_G0020490) #34	Abcc4 (MGP_SPRETEiJ_G0020491) #35	Cldn10 (MGP_SPRETEiJ_G0020492) #36
Ryukyu mouse	MODERN SPECIES	5	Commd6 (MGP_CAROLIEiJ_G0019566) #7	MGP_CAROLIEiJ_G0019567 #8	MGP_CAROLIEiJ_G0019568 #9	Lmo7 (MGP_CAROLIEiJ_G0019569) #10	Kctd12 (MGP_CAROLIEiJ_G0019570) #11	Acod1 (MGP_CAROLIEiJ_G0019571) #12	Cln5 (MGP_CAROLIEiJ_G0019572) #13	Fbxl3 (MGP_CAROLIEiJ_G0019573) #14	Mycbp2 (MGP_CAROLIEiJ_G0019574) #15	Scel (MGP_CAROLIEiJ_G0019575) #16	Slain1 (MGP_CAROLIEiJ_G0019576) #17	Ednrb (MGP_CAROLIEiJ_G0019577) #18	Pou4f1 (MGP_CAROLIEiJ_G0019578) #19	Obi1 (MGP_CAROLIEiJ_G0019579) #20	Rbm26 (MGP_CAROLIEiJ_G0019580) #21	Ndfip2 (MGP_CAROLIEiJ_G0019581) #22	Spry2 (MGP_CAROLIEiJ_G0019582) #23	MGP_CAROLIEiJ_G0019583 #24	Trim52 (MGP_CAROLIEiJ_G0019584) #25	Slitrk1 (MGP_CAROLIEiJ_G0019585) #26	Slitrk6 (MGP_CAROLIEiJ_G0019586) #27	Slitrk5 (MGP_CAROLIEiJ_G0019587) #28	Gpc5 (MGP_CAROLIEiJ_G0019588) #29	Gpc6 (MGP_CAROLIEiJ_G0019589) #30	Dct (MGP_CAROLIEiJ_G0019590) #31	Tgds (MGP_CAROLIEiJ_G0019591) #32	Gpr180 (MGP_CAROLIEiJ_G0019592) #33	Sox21 (MGP_CAROLIEiJ_G0019593) #34	Abcc4 (MGP_CAROLIEiJ_G0019594) #35	Cldn10 (MGP_CAROLIEiJ_G0019595) #36	Dzip1 (MGP_CAROLIEiJ_G0019596) #37
Rat	MODERN SPECIES	6	Commd6 (ENSRNOG00000038012) #7	Uchl3 (ENSRNOG00000009530) #8	Lmo7 (ENSRNOG00000060775) #10	Kctd12 (ENSRNOG00000066973) #11	Acod1 (ENSRNOG00000009919) #12	AABR07019209.2 (ENSRNOG00000062279) #13	Fbxl3 (ENSRNOG00000059334) #14	Mycbp2 (ENSRNOG00000010479) #15	Scel (ENSRNOG00000024237) #16	Slain1 (ENSRNOG00000024125) #17	Ednrb (ENSRNOG00000010997) #18	Pou4f1 (ENSRNOG00000060662) #19	Obi1 (ENSRNOG00000009690) #20	ENSRNOG00000065791	Rbm26 (ENSRNOG00000009836) #21	Ndfip2 (ENSRNOG00000024022) #22	Spry2 (ENSRNOG00000010058) #23	Trim52 (ENSRNOG00000024509) #25	ENSRNOG00000064722	Slitrk1 (ENSRNOG00000009209) #26	Slitrk6 (ENSRNOG00000022337) #27	Slitrk5 (ENSRNOG00000009649) #28	Gpc5 (ENSRNOG00000071105) #29	LOC102548369 (ENSRNOG00000031960)	Gpc6 (ENSRNOG00000046660) #30	Dct (ENSRNOG00000008671) #31	Tgds (ENSRNOG00000009661) #32	Gpr180 (ENSRNOG00000009766) #33	Sox21 (ENSRNOG00000063983) #34	Abcc4 (ENSRNOG00000010064) #35	Cldn10 (ENSRNOG00000010085) #36