Sciuridae	ANCESTRAL SPECIES	4	ENSGT00440000033742.a.b #8	ENSGT01000000215472	ENSGT00390000007384 #9	ENSGT00390000016493 #10	ENSGT00390000012364 #11	ENSGT00940000153469.a.b #12	ENSGT00940000153469.a.a #13	ENSGT00390000010581 #14	ENSGT00940000156498 #15	ENSGT00830000128449 #16	ENSGT00940000155641 #17	ENSGT00940000158838 #18	ENSGT00390000005481 #19	ENSGT00730000111057 #20	ENSGT00530000063301.a.a #21	ENSGT00390000008812.b.b #22	ENSGT00940000157411 #23	ENSGT00390000012062 #25	ENSGT00940000161810 #26	ENSGT00940000154991.b #27	ENSGT01100000263482.A.a.a.d.a.a.a.b	ENSGT01100000263482.A.a.a.d.a.a.a.a.b	ENSGT01100000263482.A.a.a.d.a.a.b	ENSGT01100000263482.A.a.a.c.a	ENSGT01030000234760	ENSGT00940000158479	ENSGT00940000156339	ENSGT00390000012151	ENSGT00940000156492	ENSGT00390000012719.a	ENSGT00940000159095
Eurasian red squirrel	MODERN SPECIES	12	EVI2A (ENSSVLG00005015311) #7	RAB11FIP4 (ENSSVLG00005015383) #8	COPRS (ENSSVLG00005015650) #9	UTP6 (ENSSVLG00005015715) #10	SUZ12 (ENSSVLG00005015781) #11	CRLF3 (ENSSVLG00005016089) #12	ATAD5 (ENSSVLG00005016127) #13	TEFM (ENSSVLG00005016323) #14	ADAP2 (ENSSVLG00005016368) #15	RNF135 (ENSSVLG00005016571) #16	RHOT1 (ENSSVLG00005016781) #17	RHBDL3 (ENSSVLG00005016946) #18	C17orf75 (ENSSVLG00005017088) #19	ZNF207 (ENSSVLG00005017171) #20	ENSSVLG00005017498 #21	CDK5R1 (ENSSVLG00005017534) #22	MYO1D (ENSSVLG00005017566) #23	ENSSVLG00005017677 #24	TMEM98 (ENSSVLG00005017715) #25	ENSSVLG00005017765 #26	ASIC2 (ENSSVLG00005017834) #27	ENSSVLG00005018047 #28	ENSSVLG00005018082 #29	ENSSVLG00005018128 #30	ENSSVLG00005018180 #31	ENSSVLG00005018242 #32	ENSSVLG00005018284 #33	ENSSVLG00005018440 #34	ENSSVLG00005018536 #35	ENSSVLG00005018675 #36	ENSSVLG00005018739 #37
Marmotini	ANCESTRAL SPECIES	39	ENSGT00440000033742.a.b #8	ENSGT01000000215472	ENSGT00390000007384 #9	ENSGT00390000016493 #10	ENSGT00390000012364 #11	ENSGT00940000153469.a.b #12	ENSGT00940000153469.a.a #13	ENSGT00390000010581 #14	ENSGT00940000156498 #15	ENSGT00830000128449 #16	ENSGT00940000155641 #17	ENSGT00940000158838 #18	ENSGT00390000005481 #19	ENSGT00730000111057 #20	ENSGT00530000063301.a.a #21	ENSGT00390000008812.b.b #22	ENSGT00940000157411 #23	ENSGT00390000012062 #25	ENSGT00940000161810 #26	ENSGT00940000154991.b #27	ENSGT01100000263482.A.a.a.d.a.a.a.b	ENSGT01100000263482.A.a.a.d.a.a.a.a.b	ENSGT01100000263482.A.a.a.d.a.a.b	ENSGT01100000263482.A.a.a.c.a	ENSGT01030000234760	ENSGT00940000158479	ENSGT00940000156339	ENSGT00390000012151	ENSGT00940000156492	ENSGT00390000012719.a	ENSGT00940000159095
Alpin marmot	MODERN SPECIES	71	ENSMMMG00000012772	RAB11FIP4 (ENSMMMG00000012781) #8	ENSMMMG00000012799	COPRS (ENSMMMG00000012825) #9	UTP6 (ENSMMMG00000012830) #10	SUZ12 (ENSMMMG00000012866) #11	CRLF3 (ENSMMMG00000012930) #12	TEFM (ENSMMMG00000012960) #14	ADAP2 (ENSMMMG00000012962) #15	RNF135 (ENSMMMG00000012984) #16	RHOT1 (ENSMMMG00000013006) #17	RHBDL3 (ENSMMMG00000013354) #18	C17orf75 (ENSMMMG00000013368) #19	ZNF207 (ENSMMMG00000013387) #20	PSMD11 (ENSMMMG00000013441) #21	CDK5R1 (ENSMMMG00000013447) #22	MYO1D (ENSMMMG00000013449) #23	ENSMMMG00000013474 #25	SPACA3 (ENSMMMG00000013483) #26	ASIC2 (ENSMMMG00000013492) #27	ENSMMMG00000013509	CCL7 (ENSMMMG00000013514)	CCL11 (ENSMMMG00000013522)	ENSMMMG00000013534	ENSMMMG00000013542	ENSMMMG00000013547	CCT6B (ENSMMMG00000013567)	ZNF830 (ENSMMMG00000013592)	LIG3 (ENSMMMG00000013596)	RFFL (ENSMMMG00000013887)	RAD51D (ENSMMMG00000013919)
Marmotini_b	ANCESTRAL SPECIES	34	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #8	ENSGT00390000007384 #9	ENSGT00390000016493 #10	ENSGT00390000012364 #11	ENSGT00940000153469.a.b #12	ENSGT00940000153469.a.a #13	ENSGT00390000010581 #14	ENSGT00940000156498 #15	ENSGT00830000128449 #16	ENSGT00940000155641 #17	ENSGT00940000158838 #18	ENSGT00390000005481 #19	ENSGT00730000111057.q #20	ENSGT00530000063301.a.a #21	ENSGT00390000008812.b.b #22	ENSGT00940000157411 #23	ENSGT00390000012062 #25	ENSGT00940000161810 #26	ENSGT00940000154991.b #27	ENSGT00940000154991.a.b ##27	ENSGT01100000263482.A.a.a.d.a.a.a.b	ENSGT01100000263482.A.a.a.d.a.a.a.a.b	ENSGT01100000263482.A.a.a.d.a.a.b	ENSGT01100000263482.A.a.a.c.a	ENSGT01030000234760	ENSGT00940000158479	ENSGT00940000156339	ENSGT00390000012151	ENSGT00940000156492	ENSGT00390000012719.a
Squirrel	MODERN SPECIES	138	NF1 (ENSSTOG00000034066)	RAB11FIP4 (ENSSTOG00000010883) #8	COPRS (ENSSTOG00000025397) #9	UTP6 (ENSSTOG00000015875) #10	SUZ12 (ENSSTOG00000022754) #11	CRLF3 (ENSSTOG00000012342) #12	ATAD5 (ENSSTOG00000025411) #13	TEFM (ENSSTOG00000012367) #14	ADAP2 (ENSSTOG00000025811) #15	RNF135 (ENSSTOG00000027338) #16	RHOT1 (ENSSTOG00000011738) #17	RHBDL3 (ENSSTOG00000000698) #18	C17orf75 (ENSSTOG00000000705) #19	ENSSTOG00000000712 #20	PSMD11 (ENSSTOG00000009686) #21	CDK5R1 (ENSSTOG00000009703) #22	MYO1D (ENSSTOG00000000438) #23	TMEM98 (ENSSTOG00000011945) #25	ASIC2 (ENSSTOG00000027185) #27	ENSSTOG00000028166	CCL7 (ENSSTOG00000032557)	CCL11 (ENSSTOG00000012718)	ENSSTOG00000023292	CCL1 (ENSSTOG00000007409)	TMEM132E (ENSSTOG00000024193)	CCT6B (ENSSTOG00000027687)	ZNF830 (ENSSTOG00000006057)	LIG3 (ENSSTOG00000006065)	RFFL (ENSSTOG00000006115)	RAD51D (ENSSTOG00000006142)	FNDC8 (ENSSTOG00000006165)
Arctic ground squirrel	MODERN SPECIES	63	RAB11FIP4 (ENSUPAG00010022484) #8	ENSUPAG00010022485	COPRS (ENSUPAG00010022492) #9	ENSUPAG00010022494 #10	SUZ12 (ENSUPAG00010022503) #11	CRLF3 (ENSUPAG00010022508) #12	ATAD5 (ENSUPAG00010022514) #13	TEFM (ENSUPAG00010022537) #14	ADAP2 (ENSUPAG00010022538) #15	RNF135 (ENSUPAG00010022541) #16	RHOT1 (ENSUPAG00010022548) #17	RHBDL3 (ENSUPAG00010023045) #18	C17orf75 (ENSUPAG00010023047) #19	ZNF207 (ENSUPAG00010023051) #20	PSMD11 (ENSUPAG00010023057) #21	CDK5R1 (ENSUPAG00010023059) #22	MYO1D (ENSUPAG00010023060) #23	TMEM98 (ENSUPAG00010023062) #25	SPACA3 (ENSUPAG00010023063) #26	ASIC2 (ENSUPAG00010023064) #27