Rodentia_A ANCESTRAL SPECIES 27 ENSGT00940000155071.E #7 ENSGT00390000008983.a #8 ENSGT00940000162663 #9 ENSGT00940000157154.d #10 ENSGT00390000016404 #11 ENSGT00390000009678 #12 ENSGT00940000160890 #13 ENSGT00940000155198.C #14 ENSGT00940000160606 #15 ENSGT00940000160080 #16 ENSGT00940000160282 #17 ENSGT00950000183062.a.a.a #18 ENSGT00940000160975 #19 ENSGT00940000158065 #20 ENSGT00390000007605 #21 ENSGT00390000013995.b.a #22 ENSGT00940000162026 #23 ENSGT00890000139436.A.a ENSGT00940000155865 #24 ENSGT00650000094763 ENSGT00940000159892 #25 ENSGT00730000111641 #26 ENSGT00940000156326 #27 ENSGT01020000230354.A.a #29 ENSGT00940000159731 #30 ENSGT00390000008631.a #31 ENSGT00550000074831 #32 ENSGT00390000010697 #33 ENSGT00940000156493 #34 ENSGT00940000159882 #35 ENSGT00940000162607 #36 Hystricomorpha ANCESTRAL SPECIES 34 ENSGT00940000155071.E #7 ENSGT00390000008983.a #8 ENSGT00940000162663 #9 ENSGT00940000157154.d #10 ENSGT00390000016404 #11 ENSGT00390000009678 #12 ENSGT00940000160890 #13 ENSGT00940000155198.C #14 ENSGT00940000160606 #15 ENSGT00940000160080 #16 ENSGT00940000160282 #17 ENSGT00950000183062.a.a.a #18 ENSGT00940000160975 #19 ENSGT00940000158065 #20 ENSGT00390000007605 #21 ENSGT00390000013995.b.a #22 ENSGT00940000162026 #23 ENSGT00890000139436.A.a ENSGT00940000155865 #24 ENSGT00650000094763 ENSGT00940000159892 #25 ENSGT00730000111641 #26 ENSGT00940000156326 #27 ENSGT01020000230354.A.a #29 ENSGT00940000159731 #30 ENSGT00390000008631.a #31 ENSGT00550000074831.i #32 ENSGT00390000010697 #33 ENSGT00940000156493 #34 ENSGT00940000159882 #35 ENSGT00940000162607 #36 Hystricomorpha_a ANCESTRAL SPECIES 45 ENSGT00940000155071.E #7 ENSGT00390000008983.a #8 ENSGT00940000162663 #9 ENSGT00940000157154.d #10 ENSGT00390000016404 #11 ENSGT00390000009678 #12 ENSGT00940000160890 #13 ENSGT00940000155198.C #14 ENSGT00940000160606 #15 ENSGT00940000160080 #16 ENSGT00940000160282 #17 ENSGT00950000183062.a.a.a #18 ENSGT00940000160975 #19 ENSGT00940000158065 #20 ENSGT00390000007605 #21 ENSGT00390000013995.b.a #22 ENSGT00940000162026 #23 ENSGT00890000139436.A.a ENSGT00940000155865 #24 ENSGT00940000159892 #25 ENSGT00730000111641 #26 ENSGT00940000156326 #27 ENSGT01020000230354.A.a #29 ENSGT00940000159731 #30 ENSGT00390000008631.a #31 ENSGT00550000074831.i #32 ENSGT00390000010697 #33 ENSGT00940000156493 #34 ENSGT00940000159882 #35 ENSGT00940000162607 #36 ENSGT00390000010170.a.a #37 Hystricomorpha_b ANCESTRAL SPECIES 42 ENSGT00940000155071.E #7 ENSGT00390000008983.a #8 ENSGT00940000162663 #9 ENSGT00940000157154.d #10 ENSGT00390000016404 #11 ENSGT00390000009678 #12 ENSGT00940000160890 #13 ENSGT00940000155198.C #14 ENSGT00940000160606 #15 ENSGT00940000160080 #16 ENSGT00940000160282 #17 ENSGT00950000183062.a.a.a #18 ENSGT00940000160975 #19 ENSGT00940000158065 #20 ENSGT00390000007605 #21 ENSGT00390000013995.b.a #22 ENSGT00940000162026 #23 ENSGT00890000139436.A.a ENSGT00940000155865 #24 ENSGT00940000159892 #25 ENSGT00730000111641 #26 ENSGT00940000156326 #27 ENSGT01020000230354.A.a #29 ENSGT00940000159731 #30 ENSGT00390000008631.a #31 ENSGT00550000074831.i #32 ENSGT00390000010697 #33 ENSGT00940000156493 #34 ENSGT00940000159882 #35 ENSGT00940000162607 #36 ENSGT00390000010170.a.a #37 Long-tailed chinchilla MODERN SPECIES 128 ITPR1 (ENSCLAG00000009445) #7 SUMF1 (ENSCLAG00000004509) #8 ENSCLAG00000005640 #9 LRRN1 (ENSCLAG00000004896) #10 CRBN (ENSCLAG00000004930) #11 TRNT1 (ENSCLAG00000005186) #12 IL5RA (ENSCLAG00000005656) #13 CNTN4 (ENSCLAG00000006463) #14 CNTN6 (ENSCLAG00000008602) #15 CHL1 (ENSCLAG00000006459) #16 CNTN3 (ENSCLAG00000009614) #17 PDZRN3 (ENSCLAG00000010964) #18 PPP4R2 (ENSCLAG00000003231) #19 GXYLT2 (ENSCLAG00000003908) #20 SHQ1 (ENSCLAG00000004206) #21 RYBP (ENSCLAG00000006008) #22 PROK2 (ENSCLAG00000003618) #23 EIF4E3 (ENSCLAG00000003818) #24 FOXP1 (ENSCLAG00000004963) #25 MDFIC2 (ENSCLAG00000003152) #26 MITF (ENSCLAG00000003365) #27 ENSCLAG00000004383 #28 FRMD4B (ENSCLAG00000003792) #29 LMOD3 (ENSCLAG00000006151) #30 ARL6IP5 (ENSCLAG00000003471) #31 UBA3 (ENSCLAG00000003651) #32 TMF1 (ENSCLAG00000004298) #33 EOGT (ENSCLAG00000004823) #34 TAFA4 (ENSCLAG00000011274) #35 TAFA1 (ENSCLAG00000011025) #36 SUCLG2 (ENSCLAG00000011578) #37 Degu MODERN SPECIES 71 CNTN4 (ENSODEG00000007155) #14 CNTN6 (ENSODEG00000006499) #15 ENSODEG00000007284 ENSODEG00000019383 CHL1 (ENSODEG00000010169) #16 ENSODEG00000019392 CNTN3 (ENSODEG00000006512) #17 PDZRN3 (ENSODEG00000008618) #18 ENSODEG00000006984 ENSODEG00000006618 ENSODEG00000007939 ENSODEG00000007497 ENSODEG00000019359 GXYLT2 (ENSODEG00000008178) #20 SHQ1 (ENSODEG00000009192) #21 RYBP (ENSODEG00000008699) #22 PROK2 (ENSODEG00000007144) #23 GPR27 (ENSODEG00000006497) EIF4E3 (ENSODEG00000006191) #24 FOXP1 (ENSODEG00000007047) #25 MDFIC2 (ENSODEG00000006638) #26 MITF (ENSODEG00000009287) #27 ENSODEG00000006902 FRMD4B (ENSODEG00000005588) #29 LMOD3 (ENSODEG00000005409) #30 ENSODEG00000007217 ARL6IP5 (ENSODEG00000006820) #31 ENSODEG00000007097 #32 TMF1 (ENSODEG00000007699) #33 EOGT (ENSODEG00000006871) #34 TAFA4 (ENSODEG00000005744) #35 Guinea pig MODERN SPECIES 16 SUMF1 (ENSCPOG00000014854) #8 ENSCPOG00000019854 #9 LRRN1 (ENSCPOG00000006583) #10 CRBN (ENSCPOG00000007851) #11 TRNT1 (ENSCPOG00000007849) #12 Il5ra (ENSCPOG00000007845) #13 CNTN4 (ENSCPOG00000026863) #14 CNTN6 (ENSCPOG00000001124) #15 CHL1 (ENSCPOG00000014986) #16 CNTN3 (ENSCPOG00000003218) #17 PDZRN3 (ENSCPOG00000030488) #18 PPP4R2 (ENSCPOG00000036245) #19 ENSCPOG00000030150 GXYLT2 (ENSCPOG00000000442) #20 SHQ1 (ENSCPOG00000011443) #21 RYBP (ENSCPOG00000032177) #22 PROK2 (ENSCPOG00000033908) #23 EIF4E3 (ENSCPOG00000000391) #24 FOXP1 (ENSCPOG00000003726) #25 MDFIC2 (ENSCPOG00000036240) #26 MITF (ENSCPOG00000014963) #27 FRMD4B (ENSCPOG00000037444) #29 LMOD3 (ENSCPOG00000013314) #30 ARL6IP5 (ENSCPOG00000033968) #31 UBA3 (ENSCPOG00000030763) #32 TMF1 (ENSCPOG00000013302) #33 EOGT (ENSCPOG00000013299) #34 TAFA4 (ENSCPOG00000013292) #35 TAFA1 (ENSCPOG00000014183) #36 SUCLG2 (ENSCPOG00000013421) #37 KBTBD8 (ENSCPOG00000012739) Naked mole-rat female DUPLICATION Naked mole-rat female MODERN SPECIES 28 CNTN4 (ENSHGLG00000006279) #14 ENSHGLG00000038160 CNTN6 (ENSHGLG00000003847) #15 ENSHGLG00000003621 #16 ENSHGLG00000042664 ENSHGLG00000002080 #17 ENSHGLG00000032578 ENSHGLG00000003660 ENSHGLG00000038372 ENSHGLG00000041034 ENSHGLG00000041798 PDZRN3 (ENSHGLG00000003072) #18 PPP4R2 (ENSHGLG00000002829) #19 GXYLT2 (ENSHGLG00000002778) #20 SHQ1 (ENSHGLG00000003637) #21 RYBP (ENSHGLG00000040203) #22 PROK2 (ENSHGLG00000046701) #23 GPR27 (ENSHGLG00000002574) EIF4E3 (ENSHGLG00000019560) #24 ENSHGLG00000040329 FOXP1 (ENSHGLG00000002984) #25 MDFIC2 (ENSHGLG00000043866) #26 MITF (ENSHGLG00000002575) #27 FRMD4B (ENSHGLG00000003001) #29 LMOD3 (ENSHGLG00000019110) #30 ARL6IP5 (ENSHGLG00000039284) #31 UBA3 (ENSHGLG00000019309) #32 TMF1 (ENSHGLG00000013960) #33 EOGT (ENSHGLG00000014748) #34 TAFA4 (ENSHGLG00000047561) #35 ENSHGLG00000009657 Naked mole-rat female MODERN SPECIES 5 IGF2BP3 (ENSHGLG00000013075) ENSHGLG00000021352 ENSHGLG00000021349 MALSU1 (ENSHGLG00000014820) GPNMB (ENSHGLG00000014974) ENSHGLG00000039502 ENSHGLG00000014502 ENSHGLG00000033596 ENSHGLG00000016251 ENSHGLG00000016313 ENSHGLG00000016355 ENSHGLG00000045090 TOMM7 (ENSHGLG00000006840) ENSHGLG00000007816 ENSHGLG00000020842 ENSHGLG00000020692 #22 RAPGEF5 (ENSHGLG00000013551) CDCA7L (ENSHGLG00000005237) ENSHGLG00000043520 DNAH11 (ENSHGLG00000014062) SP4 (ENSHGLG00000014842) SP8 (ENSHGLG00000041939) ENSHGLG00000007430 ITGB8 (ENSHGLG00000009109) MACC1 (ENSHGLG00000005625) ENSHGLG00000040956 TMEM196 (ENSHGLG00000035074) POLR1F (ENSHGLG00000010976) FERD3L (ENSHGLG00000036051) ENSHGLG00000033404 HDAC9 (ENSHGLG00000019023) Sciuridae ANCESTRAL SPECIES 41 ENSGT00940000155071.E #7 ENSGT00390000008983.a #8 ENSGT00940000162663 #9 ENSGT00940000157154.d #10 ENSGT00390000016404 #11 ENSGT00390000009678 #12 ENSGT00940000160890 #13 ENSGT00940000155198.C #14 ENSGT00940000160606 #15 ENSGT00940000160080 #16 ENSGT00940000160282 #17 ENSGT00950000183062.a.a.a #18 ENSGT00940000160975 #19 ENSGT00940000158065 #20 ENSGT00390000007605 #21 ENSGT00390000013995.b.a #22 ENSGT00940000162026 #23 ENSGT00890000139436.A.a ENSGT00940000155865 #24 ENSGT00940000159892 #25 ENSGT00730000111641 #26 ENSGT00940000156326 #27 ENSGT00940000156493 #34 ENSGT00390000010697 #33 ENSGT00550000074831 #32 ENSGT00390000008631.a #31 ENSGT00940000159731 #30 ENSGT01020000230354.A.a #29 ENSGT00940000159882 #35 ENSGT00940000162607 #36 ENSGT00390000010170.a.a #37 Eurasian red squirrel MODERN SPECIES 10 ENSSVLG00005025798 #9 LRRN1 (ENSSVLG00005025801) #10 ENSSVLG00005025803 CRBN (ENSSVLG00005025805) #11 TRNT1 (ENSSVLG00005025808) #12 IL5RA (ENSSVLG00005025823) #13 CNTN4 (ENSSVLG00005025842) #14 CNTN6 (ENSSVLG00005025861) #15 CHL1 (ENSSVLG00005025877) #16 CNTN3 (ENSSVLG00005025887) #17 ENSSVLG00005010270 PDZRN3 (ENSSVLG00005010337) #18 ENSSVLG00005010375 #19 GXYLT2 (ENSSVLG00005010448) #20 SHQ1 (ENSSVLG00005010502) #21 RYBP (ENSSVLG00005010589) #22 PROK2 (ENSSVLG00005010626) #23 GPR27 (ENSSVLG00005010691) EIF4E3 (ENSSVLG00005010716) #24 FOXP1 (ENSSVLG00005010914) #25 MDFIC2 (ENSSVLG00005011514) #26 MITF (ENSSVLG00005011612) #27 EOGT (ENSSVLG00005012215) #34 TMF1 (ENSSVLG00005012312) #33 UBA3 (ENSSVLG00005012414) #32 ARL6IP5 (ENSSVLG00005012505) #31 LMOD3 (ENSSVLG00005012544) #30 FRMD4B (ENSSVLG00005012609) #29 TAFA1 (ENSSVLG00005013002) #36 ENSSVLG00005013072 SUCLG2 (ENSSVLG00005013123) #37 Marmotini ANCESTRAL SPECIES 49 ENSGT00940000155071.E #7 ENSGT00390000008983.a #8 ENSGT00940000162663 #9 ENSGT00940000157154.d #10 ENSGT00390000016404 #11 ENSGT00390000009678 #12 ENSGT00940000160890 #13 ENSGT00940000155198.C #14 ENSGT00940000160606 #15 ENSGT00940000160080 #16 ENSGT00940000160282 #17 ENSGT00950000183062.a.a.a #18 ENSGT00940000160975 #19 ENSGT00940000158065 #20 ENSGT00390000007605 #21 ENSGT00390000013995.b.a #22 ENSGT00940000162026 #23 ENSGT00890000139436.A.a ENSGT00940000155865 #24 ENSGT00940000159892 #25 ENSGT00730000111641 #26 ENSGT00940000156326 #27 ENSGT00940000156493 #34 ENSGT00390000010697 #33 ENSGT00550000074831 #32 ENSGT00390000008631.a #31 ENSGT00940000159731 #30 ENSGT01020000230354.A.a #29 ENSGT00940000159882 #35 ENSGT00940000162607 #36 ENSGT00390000010170.a.a #37 Alpin marmot MODERN SPECIES 40 ITPR1 (ENSMMMG00000007640) #7 SUMF1 (ENSMMMG00000007589) #8 ENSMMMG00000007561 #9 LRRN1 (ENSMMMG00000007534) #10 CRBN (ENSMMMG00000007485) #11 TRNT1 (ENSMMMG00000007463) #12 IL5RA (ENSMMMG00000007442) #13 CNTN4 (ENSMMMG00000007297) #14 CNTN6 (ENSMMMG00000007205) #15 CHL1 (ENSMMMG00000007097) #16 CNTN3 (ENSMMMG00000007027) #17 PDZRN3 (ENSMMMG00000006989) #18 ENSMMMG00000006977 GXYLT2 (ENSMMMG00000006933) #20 SHQ1 (ENSMMMG00000006887) #21 RYBP (ENSMMMG00000006873) #22 PROK2 (ENSMMMG00000006869) #23 ENSMMMG00000006861 #24 FOXP1 (ENSMMMG00000006149) #25 MDFIC2 (ENSMMMG00000006133) #26 MITF (ENSMMMG00000006045) #27 EOGT (ENSMMMG00000006008) #34 TMF1 (ENSMMMG00000005057) #33 UBA3 (ENSMMMG00000004980) #32 ARL6IP5 (ENSMMMG00000004969) #31 LMOD3 (ENSMMMG00000004950) #30 FRMD4B (ENSMMMG00000004812) #29 ENSMMMG00000004803 #35 TAFA1 (ENSMMMG00000004799) #36 SUCLG2 (ENSMMMG00000004779) #37 KBTBD8 (ENSMMMG00000004770) Marmotini_b ANCESTRAL SPECIES 188 ENSGT00940000160282 #17 ENSGT00950000183062.a.a.a #18 ENSGT00940000160975 #19 ENSGT00940000158065 #20 ENSGT00390000007605 #21 ENSGT00390000013995.b.a #22 ENSGT00940000162026 #23 ENSGT00890000139436.A.a ENSGT00940000155865 #24 ENSGT00940000159892 #25 ENSGT00730000111641 #26 ENSGT00940000156326 #27 ENSGT00940000156493 #34 ENSGT00390000010697 #33 ENSGT00550000074831 #32 ENSGT00390000008631.a #31 ENSGT00940000159731 #30 ENSGT01020000230354.A.a #29 ENSGT00940000162607 #36 ENSGT00390000010170.a.a #37 ENSGT00940000158653 Arctic ground squirrel MODERN SPECIES 106 CNTN3 (ENSUPAG00010021535) #17 PDZRN3 (ENSUPAG00010021559) #18 PPP4R2 (ENSUPAG00010021567) #19 GXYLT2 (ENSUPAG00010021574) #20 SHQ1 (ENSUPAG00010021581) #21 RYBP (ENSUPAG00010021587) #22 PROK2 (ENSUPAG00010021589) #23 GPR27 (ENSUPAG00010021592) EIF4E3 (ENSUPAG00010021594) #24 FOXP1 (ENSUPAG00010021603) #25 MDFIC2 (ENSUPAG00010021824) #26 MITF (ENSUPAG00010021833) #27 EOGT (ENSUPAG00010021904) #34 TMF1 (ENSUPAG00010021909) #33 UBA3 (ENSUPAG00010021916) #32 ARL6IP5 (ENSUPAG00010021927) #31 LMOD3 (ENSUPAG00010021929) #30 FRMD4B (ENSUPAG00010021932) #29 TAFA1 (ENSUPAG00010021952) #36 SUCLG2 (ENSUPAG00010021955) #37 Squirrel MODERN SPECIES 203 CNTN3 (ENSSTOG00000010775) #17 PDZRN3 (ENSSTOG00000020243) #18 PPP4R2 (ENSSTOG00000024451) #19 GXYLT2 (ENSSTOG00000010059) #20 SHQ1 (ENSSTOG00000010043) #21 RYBP (ENSSTOG00000000185) #22 PROK2 (ENSSTOG00000000976) #23 EIF4E3 (ENSSTOG00000020469) #24 FOXP1 (ENSSTOG00000025624) #25 MDFIC2 (ENSSTOG00000021337) #26 MITF (ENSSTOG00000005880) #27 EOGT (ENSSTOG00000003163) #34 TMF1 (ENSSTOG00000028312) #33 UBA3 (ENSSTOG00000003215) #32 ARL6IP5 (ENSSTOG00000025065) #31 LMOD3 (ENSSTOG00000026793) #30 FRMD4B (ENSSTOG00000028861) #29 TAFA1 (ENSSTOG00000014757) #36 SUCLG2 (ENSSTOG00000020195) #37 KBTBD8 (ENSSTOG00000020443)