Chordata	ANCESTRAL SPECIES																	ENSGT00390000013995.b.a #22
Vertebrata	ANCESTRAL SPECIES	860															ENSGT00940000162859	ENSGT00390000013995.b.a #22
Gnathostomata	ANCESTRAL SPECIES	464														ENSGT00950000183062.a.a.a #18	ENSGT00940000162859	ENSGT00390000013995.b.a #22	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25
Euteleostomi	ANCESTRAL SPECIES	239			ENSGT00940000159659	ENSGT00390000018852	ENSGT00990000203541.a.b	ENSGT00940000157446	ENSGT00940000165995	ENSGT00940000157877.a	ENSGT01020000230394.e.a.a.b.a.a.a	ENSGT00940000166426	ENSGT00940000164287	ENSGT00940000166028	ENSGT00940000173141	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859	ENSGT00390000013995.b.a #22	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25
Sarcopterygii	ANCESTRAL SPECIES	6	ENSGT01030000234648.a.a.d	ENSGT00940000157717	ENSGT00940000154861	ENSGT00940000158384	ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT01050000244882.b.c.a	ENSGT00390000009678 #9	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000165309	ENSGT00390000011238	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882
Tetrapoda	ANCESTRAL SPECIES	14	ENSGT00640000091554	ENSGT00940000157794	ENSGT00940000159659	ENSGT00390000018852	ENSGT00990000203541.a.b	ENSGT00940000157446	ENSGT00940000165995	ENSGT00940000166769	ENSGT00940000174128.A	ENSGT01020000230394.e.a.a.b.a.a.a	ENSGT00940000166426	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000165309	ENSGT00390000011238	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882
Amniota	ANCESTRAL SPECIES	22	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00940000165570	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00650000094763	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000165309	ENSGT00390000011238	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493
Mammalia	ANCESTRAL SPECIES	18	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00940000165570	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00650000094763	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607
Theria	ANCESTRAL SPECIES	28	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00940000165570	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00650000094763	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607
Eutheria	ANCESTRAL SPECIES	14	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00940000165570	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00650000094763	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607
Boreoeutheria	ANCESTRAL SPECIES	2	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00940000165570	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00910000146944	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00650000094763	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882
Euarchontoglires	ANCESTRAL SPECIES	2	ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00910000146944	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00650000094763	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882
Euarchontoglires_A	ANCESTRAL SPECIES	2	ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00650000094763	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607
Glires	ANCESTRAL SPECIES	2	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00650000094763	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607
Rodentia	ANCESTRAL SPECIES	2	ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00650000094763	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607
Rodentia_B	ANCESTRAL SPECIES	26	ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607	ENSGT00390000010170.a.a
Myomorpha	ANCESTRAL SPECIES	36	ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607	ENSGT00390000010170.a.a
Lesser Egyptian jerboa	MODERN SPECIES	45	ENSJJAG00000004639 #7	Crbn (ENSJJAG00000011234) #8	Trnt1 (ENSJJAG00000018561) #9	Il5ra (ENSJJAG00000010396) #10	Cntn4 (ENSJJAG00000023102) #11	ENSJJAG00000010075 #12	Cntn6 (ENSJJAG00000013679) #13	ENSJJAG00000017679 #14	Chl1 (ENSJJAG00000020689) #15	ENSJJAG00000000622 #16	Cntn3 (ENSJJAG00000012448) #17	Pdzrn3 (ENSJJAG00000000291) #18	ENSJJAG00000022712 #19	Gxylt2 (ENSJJAG00000013774) #20	Shq1 (ENSJJAG00000017611) #21	Rybp (ENSJJAG00000017045) #22	Prok2 (ENSJJAG00000021320) #23	Gpr27 (ENSJJAG00000011153) #24	Eif4e3 (ENSJJAG00000002638) #25	Foxp1 (ENSJJAG00000022621) #26	Mdfic2 (ENSJJAG00000012963) #27	Mitf (ENSJJAG00000018472) #28	Frmd4b (ENSJJAG00000023390) #29	Minar2 (ENSJJAG00000000279) #30	Adamts19 (ENSJJAG00000021431) #31	Isoc1 (ENSJJAG00000019157) #32	Slc27a6 (ENSJJAG00000020519) #33	ENSJJAG00000017710 #34	Fbn2 (ENSJJAG00000020592) #35	Slc12a2 (ENSJJAG00000019580) #36	ENSJJAG00000017426 #37
Muroidea	ANCESTRAL SPECIES	37	ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607	ENSGT00390000010170.a.a
Muroidea_A	ANCESTRAL SPECIES	4	ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00440000035348.l	ENSGT00940000162607
Cricetidae	ANCESTRAL SPECIES	3	ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00440000035348.l	ENSGT00940000162607
Cricetidae_B	ANCESTRAL SPECIES	14	ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00440000035348.l	ENSGT00940000162607
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	130													ENSMOCG00000010977	Ncr1 (ENSMOCG00000015667)	Gp6 (ENSMOCG00000005915)	ENSMOCG00000006750 #22	Rdh13 (ENSMOCG00000001774)	ENSMOCG00000019191	Ppp1r12c (ENSMOCG00000021994)	Tnnt1 (ENSMOCG00000016771)	Tnni3 (ENSMOCG00000003904)	Dnaaf3 (ENSMOCG00000018937)	Syt5 (ENSMOCG00000015939)	Tmem86b (ENSMOCG00000007183)	Ppp6r1 (ENSMOCG00000021392)	Hspbp1 (ENSMOCG00000016855)	Brsk1 (ENSMOCG00000012734)	Tmem150b (ENSMOCG00000006716)	Kmt5c (ENSMOCG00000013978)	Cox6b2 (ENSMOCG00000007830)	ENSMOCG00000019215
Prairie vole	MODERN SPECIES	84	Trnt1 (ENSMOCG00000004539) #9	Il5ra (ENSMOCG00000015311) #10	Cntn4 (ENSMOCG00000013257) #11	Cntn6 (ENSMOCG00000005399) #13	ENSMOCG00000009333	ENSMOCG00000016932	ENSMOCG00000020899 #15	ENSMOCG00000002512 #15	ENSMOCG00000021562	Cntn3 (ENSMOCG00000007453) #17	ENSMOCG00000009808	Pdzrn3 (ENSMOCG00000015544) #18	ENSMOCG00000000955 #19	Gxylt2 (ENSMOCG00000001994) #20	Shq1 (ENSMOCG00000017836) #21	ENSMOCG00000006102 #22	Prok2 (ENSMOCG00000016202) #23	Gpr27 (ENSMOCG00000010723) #24	Eif4e3 (ENSMOCG00000020297) #25	Foxp1 (ENSMOCG00000013376) #26	Mdfic2 (ENSMOCG00000007282) #27	Mitf (ENSMOCG00000021092) #28	Frmd4b (ENSMOCG00000016753) #29	Lmod3 (ENSMOCG00000013878)	Arl6ip5 (ENSMOCG00000012711) #16	Uba3 (ENSMOCG00000022540)	Tmf1 (ENSMOCG00000021252)	Eogt (ENSMOCG00000010159)	Tafa4 (ENSMOCG00000019487)	Tafa1 (ENSMOCG00000005890)	Suclg2 (ENSMOCG00000019822)
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	16	ENSPEMG00000025770	Itpr1 (ENSPEMG00000018533)	Sumf1 (ENSPEMG00000012549)	Setmar (ENSPEMG00000023423)	Lrrn1 (ENSPEMG00000019903)	Crbn (ENSPEMG00000020177) #8	Trnt1 (ENSPEMG00000019845) #9	Il5ra (ENSPEMG00000000193) #10	Cntn4 (ENSPEMG00000020085) #11	Cntn6 (ENSPEMG00000019384) #13	Chl1 (ENSPEMG00000023675) #15	Cntn3 (ENSPEMG00000014200) #17	Pdzrn3 (ENSPEMG00000019769) #18	Gxylt2 (ENSPEMG00000005596) #20	Shq1 (ENSPEMG00000000251) #21	ENSPEMG00000017621 #22	ENSPEMG00000028366	Prok2 (ENSPEMG00000030947) #23	ENSPEMG00000026210	Gpr27 (ENSPEMG00000030430) #24	Eif4e3 (ENSPEMG00000015380) #25	Foxp1 (ENSPEMG00000010742) #26	ENSPEMG00000026818	Mdfic2 (ENSPEMG00000002945) #27	Mitf (ENSPEMG00000002848) #28	Frmd4b (ENSPEMG00000018860) #29	Lmod3 (ENSPEMG00000016784)	Arl6ip5 (ENSPEMG00000016527) #16	Uba3 (ENSPEMG00000014697)	Tmf1 (ENSPEMG00000012807)	Eogt (ENSPEMG00000010950)
Northern American deer mouse	MODERN SPECIES		ENSPEMG00000008070 #19	ENSPEMG00000030555	ENSPEMG00000027791	ENSPEMG00000028567	ENSPEMG00000025043	ENSPEMG00000024355	ENSPEMG00000025523	ENSPEMG00000028275	ENSPEMG00000025273	ENSPEMG00000029967	ENSPEMG00000028740	ENSPEMG00000018342	ENSPEMG00000024919	ENSPEMG00000000548	ENSPEMG00000021688	ENSPEMG00000019540 #22	ENSPEMG00000028735	ENSPEMG00000021886	ENSPEMG00000024193	ENSPEMG00000026564	ENSPEMG00000025606	ENSPEMG00000029556	ENSPEMG00000023355	ENSPEMG00000022128	Ppp2r1a (ENSPEMG00000022177)	ENSPEMG00000021758	ENSPEMG00000028027	ENSPEMG00000024558	ENSPEMG00000029389	Vmn1r237 (ENSPEMG00000024592)	ENSPEMG00000030204
Cricetinae	ANCESTRAL SPECIES	8	ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607	ENSGT00390000010170.a.a
Chinese hamster chok1gshd	MODERN SPECIES	144	Lrrn1 (ENSCGRG00001000760)	Crbn (ENSCGRG00001014850) #8	Trnt1 (ENSCGRG00001009998) #9	Il5ra (ENSCGRG00001023890) #10	Cntn4 (ENSCGRG00001005552) #11	Cntn6 (ENSCGRG00001012547) #13	Chl1 (ENSCGRG00001021609) #15	ENSCGRG00001015306	ENSCGRG00001015607	Cntn3 (ENSCGRG00001013551) #17	ENSCGRG00001003940	Pdzrn3 (ENSCGRG00001017365) #18	Ppp4r2 (ENSCGRG00001010724)	Gxylt2 (ENSCGRG00001012822) #20	Shq1 (ENSCGRG00001012583) #21	Rybp (ENSCGRG00001020152) #22	ENSCGRG00001005960	Prok2 (ENSCGRG00001020805) #23	Gpr27 (ENSCGRG00001001036) #24	Eif4e3 (ENSCGRG00001016500) #25	Foxp1 (ENSCGRG00001015802) #26	Mdfic2 (ENSCGRG00001018361) #27	Mitf (ENSCGRG00001011883) #28	Frmd4b (ENSCGRG00001020840) #29	Lmod3 (ENSCGRG00001010389)	Arl6ip5 (ENSCGRG00001018813) #16	Uba3 (ENSCGRG00001022490)	Tmf1 (ENSCGRG00001018858)	Eogt (ENSCGRG00001015087)	Tafa4 (ENSCGRG00001013503)	ENSCGRG00001008617
Golden Hamster	MODERN SPECIES	643										Cntn3 (ENSMAUG00000010639) #17	Pdzrn3 (ENSMAUG00000007003) #18	Ppp4r2 (ENSMAUG00000010766)	Gxylt2 (ENSMAUG00000021811) #20	Shq1 (ENSMAUG00000022030) #21	ENSMAUG00000010991	Rybp (ENSMAUG00000010834) #22	Prok2 (ENSMAUG00000007849) #23	Gpr27 (ENSMAUG00000010831) #24	Eif4e3 (ENSMAUG00000019824) #25	Foxp1 (ENSMAUG00000022171) #26	Mdfic2 (ENSMAUG00000012915) #27	Mitf (ENSMAUG00000004545) #28	Frmd4b (ENSMAUG00000007225) #29	Lmod3 (ENSMAUG00000010204)	Arl6ip5 (ENSMAUG00000009657) #16	Uba3 (ENSMAUG00000017525)	Tmf1 (ENSMAUG00000021427)	Eogt (ENSMAUG00000017534)	ENSMAUG00000020979	Tafa4 (ENSMAUG00000019968)	Tafa1 (ENSMAUG00000019067)
Murinae	ANCESTRAL SPECIES	4	ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00440000035348.l	ENSGT00940000162607
Rat	MODERN SPECIES	14	Lrrn1 (ENSRNOG00000006802)	Crbn (ENSRNOG00000006534) #8	Trnt1 (ENSRNOG00000006432) #9	Il5ra (ENSRNOG00000005954) #10	Cntn4 (ENSRNOG00000005652) #11	Cntn6 (ENSRNOG00000032517) #13	AABR07061614.1 (ENSRNOG00000032820)	ENSRNOG00000065903	Chl1 (ENSRNOG00000045771) #15	Cntn3 (ENSRNOG00000006144) #17	Pdzrn3 (ENSRNOG00000057556) #18	Ppp4r2 (ENSRNOG00000024647)	Gxylt2 (ENSRNOG00000005621) #20	Actg1-ps9 (ENSRNOG00000062691)	Shq1 (ENSRNOG00000005433) #21	LOC120102351 (ENSRNOG00000005353) #22	LOC120102174 (ENSRNOG00000033673)	Prok2 (ENSRNOG00000010898) #23	Ier3ip1-ps1 (ENSRNOG00000030004)	Gpr27 (ENSRNOG00000010880) #24	Eif4e3 (ENSRNOG00000010301) #25	Foxp1 (ENSRNOG00000009184) #26	Mdfic2 (ENSRNOG00000064294) #27	Mitf (ENSRNOG00000008658) #28	Frmd4b (ENSRNOG00000007764) #29	Lmod3 (ENSRNOG00000032443)	Arl6ip5 (ENSRNOG00000006818) #16	Uba3 (ENSRNOG00000006221)	Tmf1 (ENSRNOG00000056462)	Eogt (ENSRNOG00000024533)	Tafa4 (ENSRNOG00000005830)
Mus	ANCESTRAL SPECIES	12	ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00440000035348.l	ENSGT00940000162607
Shrew mouse	MODERN SPECIES	11	Itpr1 (MGP_PahariEiJ_G0022454)	Sumf1 (MGP_PahariEiJ_G0022453)	Setmar (MGP_PahariEiJ_G0022452)	Lrrn1 (MGP_PahariEiJ_G0022451)	Crbn (MGP_PahariEiJ_G0022450) #8	Trnt1 (MGP_PahariEiJ_G0022449) #9	Il5ra (MGP_PahariEiJ_G0022448) #10	MGP_PahariEiJ_G0022447 #11	Cntn6 (MGP_PahariEiJ_G0022446) #13	Chl1 (MGP_PahariEiJ_G0022445) #15	Cntn3 (MGP_PahariEiJ_G0022444) #17	Pdzrn3 (MGP_PahariEiJ_G0022443) #18	Ppp4r2 (MGP_PahariEiJ_G0022442)	Gxylt2 (MGP_PahariEiJ_G0022441) #20	Shq1 (MGP_PahariEiJ_G0022440) #21	Rybp (MGP_PahariEiJ_G0022439) #22	Prok2 (MGP_PahariEiJ_G0022438) #23	Gpr27 (MGP_PahariEiJ_G0022437) #24	Eif4e3 (MGP_PahariEiJ_G0022436) #25	MGP_PahariEiJ_G0022435	Foxp1 (MGP_PahariEiJ_G0022434) #26	Mdfic2 (MGP_PahariEiJ_G0022433) #27	Mitf (MGP_PahariEiJ_G0022432) #28	Frmd4b (MGP_PahariEiJ_G0022431) #29	Lmod3 (MGP_PahariEiJ_G0022430)	Arl6ip5 (MGP_PahariEiJ_G0022429) #16	Uba3 (MGP_PahariEiJ_G0022428)	Tmf1 (MGP_PahariEiJ_G0022427)	Eogt (MGP_PahariEiJ_G0022426)	Tafa4 (MGP_PahariEiJ_G0022425)	Nup50l (MGP_PahariEiJ_G0022424)
Mus_A	ANCESTRAL SPECIES	7	ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a.e #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00440000035348.l	ENSGT00940000162607
Ryukyu mouse	MODERN SPECIES	15	Itpr1 (MGP_CAROLIEiJ_G0028703)	Sumf1 (MGP_CAROLIEiJ_G0028702)	Setmar (MGP_CAROLIEiJ_G0028701)	Lrrn1 (MGP_CAROLIEiJ_G0028700)	Crbn (MGP_CAROLIEiJ_G0028699) #8	Trnt1 (MGP_CAROLIEiJ_G0028698) #9	Il5ra (MGP_CAROLIEiJ_G0028697) #10	Cntn4 (MGP_CAROLIEiJ_G0028696) #11	Cntn6 (MGP_CAROLIEiJ_G0028695) #13	Chl1 (MGP_CAROLIEiJ_G0028694) #15	Cntn3 (MGP_CAROLIEiJ_G0028693) #17	Pdzrn3 (MGP_CAROLIEiJ_G0028692) #18	Ppp4r2 (MGP_CAROLIEiJ_G0028691)	Gxylt2 (MGP_CAROLIEiJ_G0028690) #20	Shq1 (MGP_CAROLIEiJ_G0028689) #21	Rybp (MGP_CAROLIEiJ_G0028688) #22	Prok2 (MGP_CAROLIEiJ_G0028687) #23	Gpr27 (MGP_CAROLIEiJ_G0028686) #24	Eif4e3 (MGP_CAROLIEiJ_G0028685) #25	MGP_CAROLIEiJ_G0028684	Foxp1 (MGP_CAROLIEiJ_G0028683) #26	Mdfic2 (MGP_CAROLIEiJ_G0028682) #27	Mitf (MGP_CAROLIEiJ_G0028681) #28	MGP_CAROLIEiJ_G0028680	Arl6ip5 (MGP_CAROLIEiJ_G0028679) #16	MGP_CAROLIEiJ_G0028678	MGP_CAROLIEiJ_G0028677	MGP_CAROLIEiJ_G0028676	MGP_CAROLIEiJ_G0028675	Nup50l (MGP_CAROLIEiJ_G0028674)	MGP_CAROLIEiJ_G0028673
Mus_B	ANCESTRAL SPECIES	15	ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a.e #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00440000035348.l	ENSGT00940000162607
Mouse	MODERN SPECIES	15	Itpr1 (ENSMUSG00000030102)	Sumf1 (ENSMUSG00000030101)	Setmar (ENSMUSG00000034639)	Lrrn1 (ENSMUSG00000034648)	Crbn (ENSMUSG00000005362) #8	Trnt1 (ENSMUSG00000013736) #9	Il5ra (ENSMUSG00000005364) #10	Cntn4 (ENSMUSG00000064293) #11	Cntn6 (ENSMUSG00000030092) #13	Chl1 (ENSMUSG00000030077) #15	Cntn3 (ENSMUSG00000030075) #17	Pdzrn3 (ENSMUSG00000035357) #18	Ppp4r2 (ENSMUSG00000052144)	Gxylt2 (ENSMUSG00000030074) #20	Shq1 (ENSMUSG00000035378) #21	Rybp (ENSMUSG00000072872) #22	Prok2 (ENSMUSG00000030069) #23	Gpr27 (ENSMUSG00000072875) #24	Eif4e3 (ENSMUSG00000093661) #25	Foxp1 (ENSMUSG00000030067) #26	Mdfic2 (ENSMUSG00000090667) #27	Mitf (ENSMUSG00000035158) #28	Frmd4b (ENSMUSG00000030064) #29	Lmod3 (ENSMUSG00000044086)	Arl6ip5 (ENSMUSG00000035199) #16	Uba3 (ENSMUSG00000030061)	Tmf1 (ENSMUSG00000030059)	Eogt (ENSMUSG00000035245)	Tafa4 (ENSMUSG00000046500)	Nup50l (ENSMUSG00000072878)	Tafa1 (ENSMUSG00000059187)
Mus_C	ANCESTRAL SPECIES	18	ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a.e #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00440000035348.l	ENSGT00940000162607
spretus	MODERN SPECIES	15	Itpr1 (MGP_SPRETEiJ_G0029731)	Sumf1 (MGP_SPRETEiJ_G0029730)	Setmar (MGP_SPRETEiJ_G0029729)	Lrrn1 (MGP_SPRETEiJ_G0029728)	Crbn (MGP_SPRETEiJ_G0029727) #8	Trnt1 (MGP_SPRETEiJ_G0029726) #9	Il5ra (MGP_SPRETEiJ_G0029725) #10	Cntn4 (MGP_SPRETEiJ_G0029724) #11	Cntn6 (MGP_SPRETEiJ_G0029723) #13	Chl1 (MGP_SPRETEiJ_G0029722) #15	Cntn3 (MGP_SPRETEiJ_G0029721) #17	Pdzrn3 (MGP_SPRETEiJ_G0029720) #18	Ppp4r2 (MGP_SPRETEiJ_G0029719)	Gxylt2 (MGP_SPRETEiJ_G0029718) #20	Shq1 (MGP_SPRETEiJ_G0029717) #21	Rybp (MGP_SPRETEiJ_G0029716) #22	Prok2 (MGP_SPRETEiJ_G0029715) #23	Gpr27 (MGP_SPRETEiJ_G0029714) #24	Eif4e3 (MGP_SPRETEiJ_G0029713) #25	MGP_SPRETEiJ_G0029712	Foxp1 (MGP_SPRETEiJ_G0029711) #26	Mdfic2 (MGP_SPRETEiJ_G0029710) #27	Mitf (MGP_SPRETEiJ_G0029709) #28	Frmd4b (MGP_SPRETEiJ_G0029708) #29	Lmod3 (MGP_SPRETEiJ_G0029707)	Arl6ip5 (MGP_SPRETEiJ_G0029706) #16	Uba3 (MGP_SPRETEiJ_G0029705)	Tmf1 (MGP_SPRETEiJ_G0029704)	Eogt (MGP_SPRETEiJ_G0029703)	Tafa4 (MGP_SPRETEiJ_G0029702)	Nup50l (MGP_SPRETEiJ_G0029701)
Steppe mouse	MODERN SPECIES	3356											Cntn3 (ENSMSIG00000030860) #17	Pdzrn3 (ENSMSIG00000030855) #18	Ppp4r2 (ENSMSIG00000030852)	Gxylt2 (ENSMSIG00000030850) #20	Shq1 (ENSMSIG00000030841) #21	Rybp (ENSMSIG00000030836) #22	ENSMSIG00000030829	Prok2 (ENSMSIG00000030827) #23	Gpr27 (ENSMSIG00000030826) #24	Eif4e3 (ENSMSIG00000030822) #25	Foxp1 (ENSMSIG00000030580) #26	Mdfic2 (ENSMSIG00000030573) #27	ENSMSIG00000030568	Mitf (ENSMSIG00000030546) #28	ENSMSIG00000030528
Upper Galilee mountains blind mole rat	MODERN SPECIES	763											Cntn3 (ENSNGAG00000022686) #17	Pdzrn3 (ENSNGAG00000023079) #18	ENSNGAG00000023250 #19	Gxylt2 (ENSNGAG00000003681) #20	Shq1 (ENSNGAG00000023317) #21	Rybp (ENSNGAG00000006529) #22	Prok2 (ENSNGAG00000020136) #23	Gpr27 (ENSNGAG00000004137) #24	Eif4e3 (ENSNGAG00000000837) #25
Kangaroo rat	MODERN SPECIES	331	Itpr1 (ENSDORG00000005966)	Sumf1 (ENSDORG00000006695)	Setmar (ENSDORG00000026212)	Lrrn1 (ENSDORG00000023814)	Crbn (ENSDORG00000014038) #8	Trnt1 (ENSDORG00000014035) #9	Il5ra (ENSDORG00000014033) #10	Cntn4 (ENSDORG00000014028) #11	Cntn6 (ENSDORG00000005702) #13	Chl1 (ENSDORG00000010546) #15	Cntn3 (ENSDORG00000000121) #17	Pdzrn3 (ENSDORG00000002686) #18	ENSDORG00000023761	Gxylt2 (ENSDORG00000010918) #20	ENSDORG00000029850 #21	Rybp (ENSDORG00000015021) #22	Prok2 (ENSDORG00000006150) #23	Eif4e3 (ENSDORG00000006531) #25	Foxp1 (ENSDORG00000009604) #26	Mdfic2 (ENSDORG00000029192) #27	Mitf (ENSDORG00000003336) #28	Frmd4b (ENSDORG00000002184) #29	Lmod3 (ENSDORG00000000518)	Arl6ip5 (ENSDORG00000029346) #16	Uba3 (ENSDORG00000000516)	Tmf1 (ENSDORG00000000515)	Eogt (ENSDORG00000000514)	Tafa4 (ENSDORG00000028398)	Tafa1 (ENSDORG00000008222)	Suclg2 (ENSDORG00000016563)	Kbtbd8 (ENSDORG00000000438)
Rodentia_A	ANCESTRAL SPECIES	27	ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00650000094763	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607
Hystricomorpha	ANCESTRAL SPECIES	34	ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00650000094763	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831.i	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607
Hystricomorpha_a	ANCESTRAL SPECIES	45	ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831.i	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607	ENSGT00390000010170.a.a
Guinea pig	MODERN SPECIES	16	SUMF1 (ENSCPOG00000014854)	ENSCPOG00000019854	LRRN1 (ENSCPOG00000006583)	CRBN (ENSCPOG00000007851) #8	TRNT1 (ENSCPOG00000007849) #9	Il5ra (ENSCPOG00000007845) #10	CNTN4 (ENSCPOG00000026863) #11	CNTN6 (ENSCPOG00000001124) #13	CHL1 (ENSCPOG00000014986) #15	CNTN3 (ENSCPOG00000003218) #17	PDZRN3 (ENSCPOG00000030488) #18	PPP4R2 (ENSCPOG00000036245) #19	ENSCPOG00000030150	GXYLT2 (ENSCPOG00000000442) #20	SHQ1 (ENSCPOG00000011443) #21	RYBP (ENSCPOG00000032177) #22	PROK2 (ENSCPOG00000033908) #23	EIF4E3 (ENSCPOG00000000391) #25	FOXP1 (ENSCPOG00000003726) #26	MDFIC2 (ENSCPOG00000036240) #27	MITF (ENSCPOG00000014963) #28	FRMD4B (ENSCPOG00000037444) #29	LMOD3 (ENSCPOG00000013314)	ARL6IP5 (ENSCPOG00000033968) #16	UBA3 (ENSCPOG00000030763)	TMF1 (ENSCPOG00000013302)	EOGT (ENSCPOG00000013299)	TAFA4 (ENSCPOG00000013292)	TAFA1 (ENSCPOG00000014183)	SUCLG2 (ENSCPOG00000013421)	KBTBD8 (ENSCPOG00000012739)
Hystricomorpha_b	ANCESTRAL SPECIES	42	ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831.i	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607	ENSGT00390000010170.a.a
Long-tailed chinchilla	MODERN SPECIES	128	ITPR1 (ENSCLAG00000009445)	SUMF1 (ENSCLAG00000004509)	ENSCLAG00000005640	LRRN1 (ENSCLAG00000004896)	CRBN (ENSCLAG00000004930) #8	TRNT1 (ENSCLAG00000005186) #9	IL5RA (ENSCLAG00000005656) #10	CNTN4 (ENSCLAG00000006463) #11	CNTN6 (ENSCLAG00000008602) #13	CHL1 (ENSCLAG00000006459) #15	CNTN3 (ENSCLAG00000009614) #17	PDZRN3 (ENSCLAG00000010964) #18	PPP4R2 (ENSCLAG00000003231) #19	GXYLT2 (ENSCLAG00000003908) #20	SHQ1 (ENSCLAG00000004206) #21	RYBP (ENSCLAG00000006008) #22	PROK2 (ENSCLAG00000003618) #23	EIF4E3 (ENSCLAG00000003818) #25	FOXP1 (ENSCLAG00000004963) #26	MDFIC2 (ENSCLAG00000003152) #27	MITF (ENSCLAG00000003365) #28	ENSCLAG00000004383	FRMD4B (ENSCLAG00000003792) #29	LMOD3 (ENSCLAG00000006151)	ARL6IP5 (ENSCLAG00000003471) #16	UBA3 (ENSCLAG00000003651)	TMF1 (ENSCLAG00000004298)	EOGT (ENSCLAG00000004823)	TAFA4 (ENSCLAG00000011274)	TAFA1 (ENSCLAG00000011025)	SUCLG2 (ENSCLAG00000011578)
Degu	MODERN SPECIES	71	CNTN4 (ENSODEG00000007155) #11	CNTN6 (ENSODEG00000006499) #13	ENSODEG00000007284	ENSODEG00000019383	CHL1 (ENSODEG00000010169) #15	ENSODEG00000019392	CNTN3 (ENSODEG00000006512) #17	PDZRN3 (ENSODEG00000008618) #18	ENSODEG00000006984	ENSODEG00000006618	ENSODEG00000007939	ENSODEG00000007497	ENSODEG00000019359	GXYLT2 (ENSODEG00000008178) #20	SHQ1 (ENSODEG00000009192) #21	RYBP (ENSODEG00000008699) #22	PROK2 (ENSODEG00000007144) #23	GPR27 (ENSODEG00000006497) #24	EIF4E3 (ENSODEG00000006191) #25	FOXP1 (ENSODEG00000007047) #26	MDFIC2 (ENSODEG00000006638) #27	MITF (ENSODEG00000009287) #28	ENSODEG00000006902	FRMD4B (ENSODEG00000005588) #29	LMOD3 (ENSODEG00000005409)	ENSODEG00000007217	ARL6IP5 (ENSODEG00000006820) #16	ENSODEG00000007097	TMF1 (ENSODEG00000007699)	EOGT (ENSODEG00000006871)	TAFA4 (ENSODEG00000005744)
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	28	CNTN4 (ENSHGLG00000006279) #11	ENSHGLG00000038160	CNTN6 (ENSHGLG00000003847) #13	ENSHGLG00000003621 #15	ENSHGLG00000042664	ENSHGLG00000002080 #17	ENSHGLG00000032578	ENSHGLG00000003660	ENSHGLG00000038372	ENSHGLG00000041034	ENSHGLG00000041798	PDZRN3 (ENSHGLG00000003072) #18	PPP4R2 (ENSHGLG00000002829) #19	GXYLT2 (ENSHGLG00000002778) #20	SHQ1 (ENSHGLG00000003637) #21	RYBP (ENSHGLG00000040203) #22	PROK2 (ENSHGLG00000046701) #23	GPR27 (ENSHGLG00000002574) #24	EIF4E3 (ENSHGLG00000019560) #25	ENSHGLG00000040329	FOXP1 (ENSHGLG00000002984) #26	MDFIC2 (ENSHGLG00000043866) #27	MITF (ENSHGLG00000002575) #28	FRMD4B (ENSHGLG00000003001) #29	LMOD3 (ENSHGLG00000019110)	ARL6IP5 (ENSHGLG00000039284) #16	UBA3 (ENSHGLG00000019309)	TMF1 (ENSHGLG00000013960)	EOGT (ENSHGLG00000014748)	TAFA4 (ENSHGLG00000047561)	ENSHGLG00000009657
Naked mole-rat female	MODERN SPECIES	5	IGF2BP3 (ENSHGLG00000013075)	ENSHGLG00000021352	ENSHGLG00000021349	MALSU1 (ENSHGLG00000014820)	GPNMB (ENSHGLG00000014974)	ENSHGLG00000039502	ENSHGLG00000014502	ENSHGLG00000033596	ENSHGLG00000016251	ENSHGLG00000016313	ENSHGLG00000016355	ENSHGLG00000045090	TOMM7 (ENSHGLG00000006840)	ENSHGLG00000007816	ENSHGLG00000020842	ENSHGLG00000020692 #22	RAPGEF5 (ENSHGLG00000013551)	CDCA7L (ENSHGLG00000005237)	ENSHGLG00000043520	DNAH11 (ENSHGLG00000014062)	SP4 (ENSHGLG00000014842)	SP8 (ENSHGLG00000041939)	ENSHGLG00000007430	ITGB8 (ENSHGLG00000009109)	MACC1 (ENSHGLG00000005625)	ENSHGLG00000040956	TMEM196 (ENSHGLG00000035074)	POLR1F (ENSHGLG00000010976)	FERD3L (ENSHGLG00000036051)	ENSHGLG00000033404	HDAC9 (ENSHGLG00000019023)
Sciuridae	ANCESTRAL SPECIES	41	ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT00940000156493	ENSGT00390000010697	ENSGT00550000074831	ENSGT00390000008631.a #16	ENSGT00940000159731	ENSGT01020000230354.A.a #29	ENSGT00940000159882	ENSGT00940000162607	ENSGT00390000010170.a.a
Eurasian red squirrel	MODERN SPECIES	10	ENSSVLG00005025798	LRRN1 (ENSSVLG00005025801)	ENSSVLG00005025803	CRBN (ENSSVLG00005025805) #8	TRNT1 (ENSSVLG00005025808) #9	IL5RA (ENSSVLG00005025823) #10	CNTN4 (ENSSVLG00005025842) #11	CNTN6 (ENSSVLG00005025861) #13	CHL1 (ENSSVLG00005025877) #15	CNTN3 (ENSSVLG00005025887) #17	ENSSVLG00005010270	PDZRN3 (ENSSVLG00005010337) #18	ENSSVLG00005010375 #19	GXYLT2 (ENSSVLG00005010448) #20	SHQ1 (ENSSVLG00005010502) #21	RYBP (ENSSVLG00005010589) #22	PROK2 (ENSSVLG00005010626) #23	GPR27 (ENSSVLG00005010691) #24	EIF4E3 (ENSSVLG00005010716) #25	FOXP1 (ENSSVLG00005010914) #26	MDFIC2 (ENSSVLG00005011514) #27	MITF (ENSSVLG00005011612) #28	EOGT (ENSSVLG00005012215)	TMF1 (ENSSVLG00005012312)	UBA3 (ENSSVLG00005012414)	ARL6IP5 (ENSSVLG00005012505) #16	LMOD3 (ENSSVLG00005012544)	FRMD4B (ENSSVLG00005012609) #29	TAFA1 (ENSSVLG00005013002)	ENSSVLG00005013072	SUCLG2 (ENSSVLG00005013123)
Marmotini	ANCESTRAL SPECIES	49	ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT00940000156493	ENSGT00390000010697	ENSGT00550000074831	ENSGT00390000008631.a #16	ENSGT00940000159731	ENSGT01020000230354.A.a #29	ENSGT00940000159882	ENSGT00940000162607	ENSGT00390000010170.a.a
Alpin marmot	MODERN SPECIES	40	ITPR1 (ENSMMMG00000007640)	SUMF1 (ENSMMMG00000007589)	ENSMMMG00000007561	LRRN1 (ENSMMMG00000007534)	CRBN (ENSMMMG00000007485) #8	TRNT1 (ENSMMMG00000007463) #9	IL5RA (ENSMMMG00000007442) #10	CNTN4 (ENSMMMG00000007297) #11	CNTN6 (ENSMMMG00000007205) #13	CHL1 (ENSMMMG00000007097) #15	CNTN3 (ENSMMMG00000007027) #17	PDZRN3 (ENSMMMG00000006989) #18	ENSMMMG00000006977	GXYLT2 (ENSMMMG00000006933) #20	SHQ1 (ENSMMMG00000006887) #21	RYBP (ENSMMMG00000006873) #22	PROK2 (ENSMMMG00000006869) #23	ENSMMMG00000006861 #25	FOXP1 (ENSMMMG00000006149) #26	MDFIC2 (ENSMMMG00000006133) #27	MITF (ENSMMMG00000006045) #28	EOGT (ENSMMMG00000006008)	TMF1 (ENSMMMG00000005057)	UBA3 (ENSMMMG00000004980)	ARL6IP5 (ENSMMMG00000004969) #16	LMOD3 (ENSMMMG00000004950)	FRMD4B (ENSMMMG00000004812) #29	ENSMMMG00000004803	TAFA1 (ENSMMMG00000004799)	SUCLG2 (ENSMMMG00000004779)	KBTBD8 (ENSMMMG00000004770)
Marmotini_b	ANCESTRAL SPECIES	188											ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT00940000156493	ENSGT00390000010697	ENSGT00550000074831	ENSGT00390000008631.a #16	ENSGT00940000159731	ENSGT01020000230354.A.a #29	ENSGT00940000162607	ENSGT00390000010170.a.a	ENSGT00940000158653
Arctic ground squirrel	MODERN SPECIES	106											CNTN3 (ENSUPAG00010021535) #17	PDZRN3 (ENSUPAG00010021559) #18	PPP4R2 (ENSUPAG00010021567) #19	GXYLT2 (ENSUPAG00010021574) #20	SHQ1 (ENSUPAG00010021581) #21	RYBP (ENSUPAG00010021587) #22	PROK2 (ENSUPAG00010021589) #23	GPR27 (ENSUPAG00010021592) #24	EIF4E3 (ENSUPAG00010021594) #25	FOXP1 (ENSUPAG00010021603) #26	MDFIC2 (ENSUPAG00010021824) #27	MITF (ENSUPAG00010021833) #28	EOGT (ENSUPAG00010021904)	TMF1 (ENSUPAG00010021909)	UBA3 (ENSUPAG00010021916)	ARL6IP5 (ENSUPAG00010021927) #16	LMOD3 (ENSUPAG00010021929)	FRMD4B (ENSUPAG00010021932) #29	TAFA1 (ENSUPAG00010021952)	SUCLG2 (ENSUPAG00010021955)
Squirrel	MODERN SPECIES	203											CNTN3 (ENSSTOG00000010775) #17	PDZRN3 (ENSSTOG00000020243) #18	PPP4R2 (ENSSTOG00000024451) #19	GXYLT2 (ENSSTOG00000010059) #20	SHQ1 (ENSSTOG00000010043) #21	RYBP (ENSSTOG00000000185) #22	PROK2 (ENSSTOG00000000976) #23	EIF4E3 (ENSSTOG00000020469) #25	FOXP1 (ENSSTOG00000025624) #26	MDFIC2 (ENSSTOG00000021337) #27	MITF (ENSSTOG00000005880) #28	EOGT (ENSSTOG00000003163)	TMF1 (ENSSTOG00000028312)	UBA3 (ENSSTOG00000003215)	ARL6IP5 (ENSSTOG00000025065) #16	LMOD3 (ENSSTOG00000026793)	FRMD4B (ENSSTOG00000028861) #29	TAFA1 (ENSSTOG00000014757)	SUCLG2 (ENSSTOG00000020195)	KBTBD8 (ENSSTOG00000020443)
Lagomorpha	ANCESTRAL SPECIES	11											ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607	ENSGT00390000010170.a.a	ENSGT00940000158653
Rabbit	MODERN SPECIES	20	ENSOCUG00000008926	ENSOCUG00000010081	ENSOCUG00000022648	ZSCAN16 (ENSOCUG00000039537)	ZKSCAN8 (ENSOCUG00000006850)	ORYCUNV1R1530 (ENSOCUG00000038616)	ENSOCUG00000021210	ENSOCUG00000024463	ENSOCUG00000033110	ENSOCUG00000030000	CNTN3 (ENSOCUG00000013181) #17	PDZRN3 (ENSOCUG00000007731) #18	PPP4R2 (ENSOCUG00000006235) #19	GXYLT2 (ENSOCUG00000016704) #20	SHQ1 (ENSOCUG00000016695) #21	RYBP (ENSOCUG00000011730) #22	PROK2 (ENSOCUG00000006542) #23	ENSOCUG00000000259 #25	FOXP1 (ENSOCUG00000007155) #26	ENSOCUG00000035312	ENSOCUG00000036468	MDFIC2 (ENSOCUG00000031604) #27	MITF (ENSOCUG00000002190) #28	ENSOCUG00000026608	FRMD4B (ENSOCUG00000002887) #29	LMOD3 (ENSOCUG00000008188)	ARL6IP5 (ENSOCUG00000008184) #16	UBA3 (ENSOCUG00000008169)	TMF1 (ENSOCUG00000008154)	ENSOCUG00000016492	EOGT (ENSOCUG00000012022)
Pika	MODERN SPECIES	1210																RYBP (ENSOPRG00000002312) #22
Tree shrew	MODERN SPECIES	3117																RYBP (ENSTBEG00000003789) #22
Primates	ANCESTRAL SPECIES	1	ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00910000146944	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00650000094763	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882
Strepsirrhini	ANCESTRAL SPECIES	1	ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00650000094763	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607
Lemuriformes	ANCESTRAL SPECIES	73	ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882
Mouse lemur	MODERN SPECIES	25								CNTN6 (ENSMICG00000001000) #13	CHL1 (ENSMICG00000010518) #15	CNTN3 (ENSMICG00000006231) #17	ENSMICG00000038029	PDZRN3 (ENSMICG00000028272) #18	ENSMICG00000042500 #19	GXYLT2 (ENSMICG00000036477) #20	SHQ1 (ENSMICG00000009224) #21	RYBP (ENSMICG00000045355) #22	PROK2 (ENSMICG00000001127) #23	GPR27 (ENSMICG00000032202) #24	EIF4E3 (ENSMICG00000001125) #25	FOXP1 (ENSMICG00000005350) #26	MDFIC2 (ENSMICG00000032034) #27	MITF (ENSMICG00000002894) #28	ZNF354A (ENSMICG00000006390)	CLK4 (ENSMICG00000038063)	COL23A1 (ENSMICG00000005409)	PHYKPL (ENSMICG00000005397)	HNRNPAB (ENSMICG00000027030)	NHP2 (ENSMICG00000005379)	RMND5B (ENSMICG00000005367)	N4BP3 (ENSMICG00000033359)	B4GALT7 (ENSMICG00000034153)
Lemuriformes_a	ANCESTRAL SPECIES	211																ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882
Coquerels sifaka	MODERN SPECIES	536															ENSPCOG00000027686	RYBP (ENSPCOG00000025214) #22	PROK2 (ENSPCOG00000023753) #23	GPR27 (ENSPCOG00000025824) #24	EIF4E3 (ENSPCOG00000022529) #25	FOXP1 (ENSPCOG00000016995) #26	MDFIC2 (ENSPCOG00000017992) #27
Greater bamboo lemur	MODERN SPECIES	657																RYBP (ENSPSMG00000016629) #22	PROK2 (ENSPSMG00000016641) #23	GPR27 (ENSPSMG00000016654) #24	EIF4E3 (ENSPSMG00000016679) #25	FOXP1 (ENSPSMG00000016990) #26	MDFIC2 (ENSPSMG00000017390) #27	MITF (ENSPSMG00000017533) #28	FRMD4B (ENSPSMG00000017680) #29	LMOD3 (ENSPSMG00000017702)	ENSPSMG00000017713 #16	UBA3 (ENSPSMG00000017781)	TMF1 (ENSPSMG00000017887)	EOGT (ENSPSMG00000017952)	TAFA4 (ENSPSMG00000017971)
Haplorrhini	ANCESTRAL SPECIES	5	ENSGT00940000158384	ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00910000146944	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607
Tarsier	MODERN SPECIES	7169																RYBP (ENSTSYG00000002235) #22
Simiiformes	ANCESTRAL SPECIES	1	ENSGT00440000033232.c	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00940000169558	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00940000153510.a.f	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00910000146944	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607
Platyrrhini	ANCESTRAL SPECIES	18	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00940000169558	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859	ENSGT00490000044176	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00940000153510.a.f	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831.c	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607	ENSGT00390000010170.a.a
Cebidae	ANCESTRAL SPECIES	14	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00940000169558	ENSGT00950000183062.a.a.a #18	ENSGT00490000044176	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00940000153510.a.f	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831.c	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607	ENSGT00390000010170.a.a
Marmoset	MODERN SPECIES	6	CNTN6 (ENSCJAG00000015346) #13	ENSCJAG00000084962	CHL1 (ENSCJAG00000015257) #15	ENSCJAG00000082047	ENSCJAG00000077178	CNTN3 (ENSCJAG00000015217) #17	ENSCJAG00000015202	ENSCJAG00000080600	ENSCJAG00000070041	PDZRN3 (ENSCJAG00000015181) #18	ENSCJAG00000079111	PPP4R2 (ENSCJAG00000041360) #19	GXYLT2 (ENSCJAG00000015146) #20	ENSCJAG00000075002	SHQ1 (ENSCJAG00000015131) #21	RYBP (ENSCJAG00000053393) #22	ENSCJAG00000083199	ENSCJAG00000079742	ENSCJAG00000074041	PROK2 (ENSCJAG00000080226) #23	GPR27 (ENSCJAG00000040260) #24	ENSCJAG00000044237 #25	FOXP1 (ENSCJAG00000013138) #26	ENSCJAG00000072251	MDFIC2 (ENSCJAG00000064939) #27	MITF (ENSCJAG00000013260) #28	FRMD4B (ENSCJAG00000013312) #29	LMOD3 (ENSCJAG00000013357)	ARL6IP5 (ENSCJAG00000044302) #16	UBA3 (ENSCJAG00000013395)	TMF1 (ENSCJAG00000013491)
Cebidae_a	ANCESTRAL SPECIES	24							ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00940000169558	ENSGT00950000183062.a.a.a #18	ENSGT00490000044176	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00940000153510.a.f	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831.c	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607	ENSGT00390000010170.a.a
Bolivian squirrel monkey	MODERN SPECIES	156									CNTN3 (ENSSBOG00000013155) #17	PDZRN3 (ENSSBOG00000029197) #18	PPP4R2 (ENSSBOG00000018839) #19	ENSSBOG00000030623	GXYLT2 (ENSSBOG00000021809) #20	ENSSBOG00000030665	SHQ1 (ENSSBOG00000021038) #21	RYBP (ENSSBOG00000024112) #22	PROK2 (ENSSBOG00000029837) #23	EIF4E3 (ENSSBOG00000020647) #25	FOXP1 (ENSSBOG00000027035) #26	MDFIC2 (ENSSBOG00000022036) #27	MITF (ENSSBOG00000023784) #28	FRMD4B (ENSSBOG00000029694) #29	LMOD3 (ENSSBOG00000031092)	ARL6IP5 (ENSSBOG00000033916) #16	ENSSBOG00000028598	TMF1 (ENSSBOG00000024217)	ENSSBOG00000036317	EOGT (ENSSBOG00000025714)	TAFA4 (ENSSBOG00000027474)	ENSSBOG00000027899
Capuchin	MODERN SPECIES	152							CHL1 (ENSCCAG00000031503) #15	CNTN3 (ENSCCAG00000032568) #17	ENSCCAG00000028882	PDZRN3 (ENSCCAG00000028868) #18	ENSCCAG00000008412	PPP4R2 (ENSCCAG00000023322) #19	GXYLT2 (ENSCCAG00000023840) #20	ENSCCAG00000035805	ENSCCAG00000027080 #21	RYBP (ENSCCAG00000025583) #22	PROK2 (ENSCCAG00000020540) #23	GPR27 (ENSCCAG00000032437) #24	EIF4E3 (ENSCCAG00000002248) #25
Mas night monkey	MODERN SPECIES	1103											PDZRN3 (ENSANAG00000024526) #18	ENSANAG00000024156	GXYLT2 (ENSANAG00000029166) #20	ENSANAG00000033608	ENSANAG00000029241 #21	RYBP (ENSANAG00000027832) #22	PROK2 (ENSANAG00000025790) #23	GPR27 (ENSANAG00000015856) #24	EIF4E3 (ENSANAG00000031727) #25	FOXP1 (ENSANAG00000028269) #26	ENSANAG00000017661	ENSANAG00000020794	MDFIC2 (ENSANAG00000031584) #27	MITF (ENSANAG00000033269) #28	FRMD4B (ENSANAG00000034952) #29	LMOD3 (ENSANAG00000020335)	ARL6IP5 (ENSANAG00000021456) #16	ENSANAG00000035877	TMF1 (ENSANAG00000037546)	EOGT (ENSANAG00000030876)	TAFA4 (ENSANAG00000020763)
Catarrhini	ANCESTRAL SPECIES	2	ENSGT00390000014001.b	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00940000169558	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00940000153510.a.f	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00910000146944	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00530000063786.a.m	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT01040000240967	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493
Cercopithecidae	ANCESTRAL SPECIES	1	ENSGT00390000014001.b	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00940000169558	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00940000153510.a.f	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00390000004169.b	ENSGT00940000162026 #23	ENSGT00910000146944	ENSGT00890000139436.A.a #24	ENSGT00940000155865.a.a #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00530000063786.a.m	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a.d.a #16	ENSGT01040000240967	ENSGT00390000008631.a.c #16	ENSGT00550000074831
Rhinopithecus	ANCESTRAL SPECIES	376								ENSGT00940000160282 #17	ENSGT00940000169558	ENSGT00950000183062.a.a.a #18	ENSGT00490000044176.a	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00940000153510.a.f.a	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00390000004169.b	ENSGT00940000162026 #23	ENSGT00910000146944	ENSGT00940000155865.a.a #25	ENSGT00940000159892 #26
Golden snub-nosed monkey	MODERN SPECIES	2551							CNTN3 (ENSRROG00000015240) #17	ENSRROG00000043474	PDZRN3 (ENSRROG00000000088) #18	ENSRROG00000014332	ENSRROG00000013459 #19	EBLN2 (ENSRROG00000045407)	GXYLT2 (ENSRROG00000032249) #20	ENSRROG00000014028	SHQ1 (ENSRROG00000034126) #21	RYBP (ENSRROG00000043276) #22	ENSRROG00000031494	PROK2 (ENSRROG00000038544) #23	ENSRROG00000028681	ENSRROG00000014883 #25	FOXP1 (ENSRROG00000044844) #26
Black snub-nosed monkey	MODERN SPECIES	1077											PPP4R2 (ENSRBIG00000040717) #19	EBLN2 (ENSRBIG00000000043)	GXYLT2 (ENSRBIG00000032701) #20	ENSRBIG00000036548	SHQ1 (ENSRBIG00000026280) #21	RYBP (ENSRBIG00000037631) #22	ENSRBIG00000031010	PROK2 (ENSRBIG00000040938) #23	EIF4E3 (ENSRBIG00000028060) #25	FOXP1 (ENSRBIG00000012977) #26
Cercopithecinae	ANCESTRAL SPECIES	5	ENSGT00390000008983.a	ENSGT00440000033232.c	ENSGT00390000014001.b	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00390000004169.b	ENSGT00940000162026 #23	ENSGT00910000146944	ENSGT00890000139436.A.a #24	ENSGT00940000155865.a.a #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00530000063786.a.m	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a.d.a #16	ENSGT01040000240967	ENSGT00550000074831	ENSGT00390000010697
Vervet Monkey	MODERN SPECIES	14	ITPR1 (ENSCSAG00000010951)	SUMF1 (ENSCSAG00000011018)	SETMAR (ENSCSAG00000011036)	LRRN1 (ENSCSAG00000018805)	CRBN (ENSCSAG00000011049) #8	TRNT1 (ENSCSAG00000011052) #9	IL5RA (ENSCSAG00000011082) #10	CNTN4 (ENSCSAG00000011111) #11	CNTN6 (ENSCSAG00000011221) #13	CHL1 (ENSCSAG00000011267) #15	CNTN3 (ENSCSAG00000011366) #17	PDZRN3 (ENSCSAG00000011455) #18	PPP4R2 (ENSCSAG00000011489) #19	GXYLT2 (ENSCSAG00000011498) #20	SHQ1 (ENSCSAG00000011514) #21	RYBP (ENSCSAG00000011518) #22	GPR27 (ENSCSAG00000018804) #24	ENSCSAG00000011556 #25	FOXP1 (ENSCSAG00000011581) #26	ENSCSAG00000018802	MITF (ENSCSAG00000011595) #28	ENSCSAG00000011601	ENSCSAG00000018800	FRMD4B (ENSCSAG00000011618) #29	LMOD3 (ENSCSAG00000011626)	ARL6IP5 (ENSCSAG00000011634) #16	UBA3 (ENSCSAG00000011650)	TMF1 (ENSCSAG00000011667)	EOGT (ENSCSAG00000011678)	TAFA4 (ENSCSAG00000011689)	ENSCSAG00000011694
Cercopithecinae_a	ANCESTRAL SPECIES	5	ENSGT00390000008983.a	ENSGT00440000033232.c	ENSGT00390000014001.b	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00390000004169.b	ENSGT00940000162026 #23	ENSGT00910000146944	ENSGT00890000139436.A.a #24	ENSGT00940000155865.a.a #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00530000063786.a.m	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a.d.a #16	ENSGT01040000240967	ENSGT00550000074831	ENSGT00390000010697
Macaca	ANCESTRAL SPECIES	5	ENSGT00390000008983.a	ENSGT00440000033232.c.f	ENSGT00390000014001.b	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00910000146944	ENSGT00890000139436.A.a #24	ENSGT00940000155865.a.a #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a.d.a #16	ENSGT01040000240967	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882
Pig-tailed macaque	MODERN SPECIES	560	CCSER1 (ENSMNEG00000030774)	ENSMNEG00000032609	GRID2 (ENSMNEG00000015816)	ATOH1 (ENSMNEG00000006193)	SMARCAD1 (ENSMNEG00000038117)	HPGDS (ENSMNEG00000033422)	PDLIM5 (ENSMNEG00000031120)	CNTN6 (ENSMNEG00000018635) #13	CHL1 (ENSMNEG00000028818) #15	CNTN3 (ENSMNEG00000035492) #17	ENSMNEG00000038271	PDZRN3 (ENSMNEG00000034940) #18	ENSMNEG00000014462 #19	GXYLT2 (ENSMNEG00000031743) #20	SHQ1 (ENSMNEG00000032667) #21	RYBP (ENSMNEG00000010262) #22	PROK2 (ENSMNEG00000035459) #23	ENSMNEG00000006444	GPR27 (ENSMNEG00000017685) #24	ENSMNEG00000035212 #25	FOXP1 (ENSMNEG00000028530) #26	MDFIC2 (ENSMNEG00000043959) #27	ENSMNEG00000029209	ENSMNEG00000013127	MITF (ENSMNEG00000036173) #28
Macaca_a	ANCESTRAL SPECIES	5	ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00440000033232.c.f	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00910000146944	ENSGT00890000139436.A.a #24	ENSGT00940000155865.a.a #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a.d.a #16	ENSGT01040000240967	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882
Rhesus	MODERN SPECIES	11	TRNT1 (ENSMMUG00000017983) #9	IL5RA (ENSMMUG00000001849) #10	CNTN4 (ENSMMUG00000001847) #11	ENSMMUG00000056158	ENSMMUG00000009425	ENSMMUG00000051943	CNTN6 (ENSMMUG00000008549) #13	CHL1 (ENSMMUG00000001349) #15	CNTN3 (ENSMMUG00000021241) #17	ENSMMUG00000051810	PDZRN3 (ENSMMUG00000012661) #18	ENSMMUG00000064384	PPP4R2 (ENSMMUG00000016959) #19	GXYLT2 (ENSMMUG00000022507) #20	SHQ1 (ENSMMUG00000009571) #21	RYBP (ENSMMUG00000042444) #22	PROK2 (ENSMMUG00000018494) #23	GPR27 (ENSMMUG00000040565) #24	EIF4E3 (ENSMMUG00000007780) #25	FOXP1 (ENSMMUG00000002889) #26	MDFIC2 (ENSMMUG00000057543) #27	MITF (ENSMMUG00000002100) #28	FRMD4B (ENSMMUG00000000387) #29	LMOD3 (ENSMMUG00000008628)	ARL6IP5 (ENSMMUG00000058373) #16	UBA3 (ENSMMUG00000008620)	TMF1 (ENSMMUG00000008616)	EOGT (ENSMMUG00000011090)	TAFA4 (ENSMMUG00000050069)	TAFA1 (ENSMMUG00000013847)	SUCLG2 (ENSMMUG00000009693)
Crab-eating macaque	MODERN SPECIES	11	SUMF1 (ENSMFAG00000040853)	ENSMFAG00000029288	LRRN1 (ENSMFAG00000020302)	CRBN (ENSMFAG00000031028) #8	TRNT1 (ENSMFAG00000045113) #9	IL5RA (ENSMFAG00000006030) #10	CNTN4 (ENSMFAG00000031919) #11	CNTN6 (ENSMFAG00000001088) #13	CHL1 (ENSMFAG00000040804) #15	CNTN3 (ENSMFAG00000045446) #17	PDZRN3 (ENSMFAG00000000986) #18	PPP4R2 (ENSMFAG00000042258) #19	GXYLT2 (ENSMFAG00000044294) #20	SHQ1 (ENSMFAG00000039148) #21	ENSMFAG00000048279	RYBP (ENSMFAG00000049247) #22	PROK2 (ENSMFAG00000003820) #23	ENSMFAG00000024958	GPR27 (ENSMFAG00000053255) #24	EIF4E3 (ENSMFAG00000039909) #25	FOXP1 (ENSMFAG00000033964) #26	MDFIC2 (ENSMFAG00000042217) #27	MITF (ENSMFAG00000038478) #28	FRMD4B (ENSMFAG00000040109) #29	LMOD3 (ENSMFAG00000044328)	ARL6IP5 (ENSMFAG00000001584) #16	ENSMFAG00000051018	UBA3 (ENSMFAG00000036648)	TMF1 (ENSMFAG00000037002)	EOGT (ENSMFAG00000041998)	TAFA4 (ENSMFAG00000020992)
Cercopithecinae_b	ANCESTRAL SPECIES		ENSGT00390000008983.a	ENSGT00440000033232.c	ENSGT00390000014001.b	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00390000004169.b	ENSGT00940000162026 #23	ENSGT00910000146944	ENSGT00890000139436.A.a #24	ENSGT00940000155865.a.a #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00530000063786.a.m	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a.d.a #16	ENSGT01040000240967	ENSGT00550000074831	ENSGT00390000010697
Olive baboon	MODERN SPECIES	11	TRNT1 (ENSPANG00000025944) #9	IL5RA (ENSPANG00000011489) #10	ENSPANG00000011250 #11	ENSPANG00000041415 #11	CNTN6 (ENSPANG00000010252) #13	ENSPANG00000050596	CHL1 (ENSPANG00000007743) #15	ENSPANG00000049590	CNTN3 (ENSPANG00000011424) #17	PDZRN3 (ENSPANG00000011423) #18	PPP4R2 (ENSPANG00000004247) #19	GXYLT2 (ENSPANG00000023883) #20	ENSPANG00000041507	SHQ1 (ENSPANG00000002881) #21	ENSPANG00000043336	RYBP (ENSPANG00000046879) #22	PROK2 (ENSPANG00000031802) #23	GPR27 (ENSPANG00000037165) #24	ENSPANG00000024441 #25	FOXP1 (ENSPANG00000009084) #26	MDFIC2 (ENSPANG00000040564) #27	MITF (ENSPANG00000011565) #28	ENSPANG00000030680	FRMD4B (ENSPANG00000022151) #29	LMOD3 (ENSPANG00000011422)	ARL6IP5 (ENSPANG00000006554) #16	UBA3 (ENSPANG00000021492)	ENSPANG00000029557	TMF1 (ENSPANG00000014204)	EOGT (ENSPANG00000012769)	ENSPANG00000022502
Cercopithecinae_d	ANCESTRAL SPECIES	12	ENSGT00390000008983.a	ENSGT00440000033232.c	ENSGT00390000014001.b	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00390000004169.b	ENSGT00940000162026 #23	ENSGT00910000146944	ENSGT00890000139436.A.a #24	ENSGT00940000155865.a.a #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00530000063786.a.m	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a.d.a #16	ENSGT01040000240967	ENSGT00550000074831	ENSGT00390000010697
Drill	MODERN SPECIES	264	EEFSEC (ENSMLEG00000041771)	ENSMLEG00000044016	RUVBL1 (ENSMLEG00000038540)	SEC61A1 (ENSMLEG00000032430)	KBTBD12 (ENSMLEG00000032213)	MGLL (ENSMLEG00000038697)	ABTB1 (ENSMLEG00000043506)	PODXL2 (ENSMLEG00000021945)	MCM2 (ENSMLEG00000038079)	TPRA1 (ENSMLEG00000034167)	ENSMLEG00000026183	PRR23E (ENSMLEG00000030492)	PPP4R2 (ENSMLEG00000040160) #19	GXYLT2 (ENSMLEG00000000099) #20	SHQ1 (ENSMLEG00000038493) #21	RYBP (ENSMLEG00000038150) #22	ENSMLEG00000037986	PROK2 (ENSMLEG00000030120) #23	ENSMLEG00000010756	ENSMLEG00000038551 #25	FOXP1 (ENSMLEG00000037250) #26	MDFIC2 (ENSMLEG00000007420) #27	ENSMLEG00000034644	MITF (ENSMLEG00000039415) #28	FRMD4B (ENSMLEG00000034545) #29	LMOD3 (ENSMLEG00000008625)	ARL6IP5 (ENSMLEG00000032302) #16	ENSMLEG00000035493	UBA3 (ENSMLEG00000043478)	TMF1 (ENSMLEG00000035288)	EOGT (ENSMLEG00000026880)
Sooty mangabey	MODERN SPECIES	650	SUMF1 (ENSCATG00000041356)	SETMAR (ENSCATG00000030348)	ENSCATG00000036442	LRRN1 (ENSCATG00000022421)	CRBN (ENSCATG00000031208) #8	TRNT1 (ENSCATG00000031985) #9	IL5RA (ENSCATG00000034457) #10	CNTN4 (ENSCATG00000013943) #11	CNTN6 (ENSCATG00000010690) #13	CHL1 (ENSCATG00000029263) #15	CNTN3 (ENSCATG00000034171) #17	PDZRN3 (ENSCATG00000011356) #18	PPP4R2 (ENSCATG00000043982) #19	GXYLT2 (ENSCATG00000041906) #20	SHQ1 (ENSCATG00000041238) #21	RYBP (ENSCATG00000034872) #22	ENSCATG00000036252	PROK2 (ENSCATG00000034783) #23	ENSCATG00000004327	GPR27 (ENSCATG00000022613) #24	ENSCATG00000042150 #25	FOXP1 (ENSCATG00000044155) #26	MDFIC2 (ENSCATG00000030313) #27	ENSCATG00000035930	MITF (ENSCATG00000036190) #28	FRMD4B (ENSCATG00000041747) #29	LMOD3 (ENSCATG00000014427)	ARL6IP5 (ENSCATG00000029543) #16	ENSCATG00000029114	UBA3 (ENSCATG00000043878)	TMF1 (ENSCATG00000042507)
Hominoidea	ANCESTRAL SPECIES	2	ENSGT00440000033232.c	ENSGT00390000014001.b	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975.g #19	ENSGT00490000044176.b.b	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00910000146944	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00530000063786.a.m	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT01040000240967	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493
Gibbon	MODERN SPECIES	13	TRNT1 (ENSNLEG00000003226) #9	IL5RA (ENSNLEG00000003193) #10	CNTN4 (ENSNLEG00000003113) #11	ENSNLEG00000034611	ENSNLEG00000029240	CNTN6 (ENSNLEG00000003079) #13	CHL1 (ENSNLEG00000002952) #15	CNTN3 (ENSNLEG00000002884) #17	ENSNLEG00000036254	PDZRN3 (ENSNLEG00000002833) #18	PPP4R2 (ENSNLEG00000029576) #19	ENSNLEG00000035814	GXYLT2 (ENSNLEG00000002790) #20	ENSNLEG00000029680	SHQ1 (ENSNLEG00000002731) #21	RYBP (ENSNLEG00000031222) #22	PROK2 (ENSNLEG00000002696) #23	ENSNLEG00000002684 #25	FOXP1 (ENSNLEG00000002497) #26	MDFIC2 (ENSNLEG00000030576) #27	ENSNLEG00000002490	ENSNLEG00000029106	MITF (ENSNLEG00000002357) #28	FRMD4B (ENSNLEG00000002248) #29	LMOD3 (ENSNLEG00000002236)	ARL6IP5 (ENSNLEG00000029362) #16	UBA3 (ENSNLEG00000002198)	ENSNLEG00000031694	TMF1 (ENSNLEG00000002036)	EOGT (ENSNLEG00000001976)	TAFA4 (ENSNLEG00000001971)
Hominidae	ANCESTRAL SPECIES	2	ENSGT00390000014001.b	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00940000153272.a.b.o.b.b	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975.g #19	ENSGT00490000044176.b.b	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00910000146944	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00530000063786.a.m	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT01040000240967	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493
Orangutan	MODERN SPECIES	16	LRRN1 (ENSPPYG00000013700)	CRBN (ENSPPYG00000013701) #8	TRNT1 (ENSPPYG00000013702) #9	IL5RA (ENSPPYG00000013703) #10	CNTN4 (ENSPPYG00000013704) #11	ENSPPYG00000033051	CNTN6 (ENSPPYG00000013706) #13	ENSPPYG00000013708	CHL1 (ENSPPYG00000013709) #15	CNTN3 (ENSPPYG00000013710) #17	PDZRN3 (ENSPPYG00000013713) #18	PPP4R2 (ENSPPYG00000013715) #19	GXYLT2 (ENSPPYG00000013716) #20	ENSPPYG00000038319	SHQ1 (ENSPPYG00000013717) #21	RYBP (ENSPPYG00000033076) #22	PROK2 (ENSPPYG00000013719) #23	GPR27 (ENSPPYG00000013720) #24	EIF4E3 (ENSPPYG00000033784) #25	FOXP1 (ENSPPYG00000013722) #26	MDFIC2 (ENSPPYG00000041220) #27	MITF (ENSPPYG00000013725) #28	FRMD4B (ENSPPYG00000013726) #29	LMOD3 (ENSPPYG00000013727)	ARL6IP5 (ENSPPYG00000013728) #16	UBA3 (ENSPPYG00000013729)	ENSPPYG00000038623	TMF1 (ENSPPYG00000013730)	EOGT (ENSPPYG00000013731)	ENSPPYG00000035430	TAFA1 (ENSPPYG00000013733)
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	2	ENSGT00530000063353.a.b.b	ENSGT00940000155947	ENSGT00930000151026.e.b	ENSGT00390000017040	ENSGT00940000154477.i	ENSGT00940000156324	ENSGT00390000017955.c.s.b	ENSGT00940000164367	ENSGT00940000160282 #17	ENSGT00940000153272.a.b.o.b.b	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975.g #19	ENSGT00490000044176.b.b	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00910000146944	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00530000063786.a.m	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT01040000240967	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493
Gorilla	MODERN SPECIES	16	ROBO1 (ENSGGOG00000001449)	ENSGGOG00000027306	ENSGGOG00000040855	ROBO2 (ENSGGOG00000011779)	ENSGGOG00000041697	ENSGGOG00000040706	ENSGGOG00000025270	CNTN3 (ENSGGOG00000002395) #17	ENSGGOG00000024839	PDZRN3 (ENSGGOG00000008313) #18	ENSGGOG00000005021	PPP4R2 (ENSGGOG00000008408) #19	ENSGGOG00000043304	GXYLT2 (ENSGGOG00000005057) #20	SHQ1 (ENSGGOG00000034818) #21	RYBP (ENSGGOG00000040802) #22	PROK2 (ENSGGOG00000024537) #23	ENSGGOG00000039593	GPR27 (ENSGGOG00000010203) #24	ENSGGOG00000042096 #25	FOXP1 (ENSGGOG00000010391) #26	RNF151 (ENSGGOG00000009376)	MDFIC2 (ENSGGOG00000043971) #27	ENSGGOG00000026201	MITF (ENSGGOG00000024338) #28	FRMD4B (ENSGGOG00000002181) #29	LMOD3 (ENSGGOG00000015200)	ARL6IP5 (ENSGGOG00000000983) #16	ENSGGOG00000036802	UBA3 (ENSGGOG00000003959)	TMF1 (ENSGGOG00000006754)
Homo/Pan group	ANCESTRAL SPECIES	3	ENSGT00940000155947	ENSGT00930000151026.e.b	ENSGT00390000017040	ENSGT00940000154477.i	ENSGT00940000156324	ENSGT00390000017955.c.s.b	ENSGT00940000164367	ENSGT00530000064266.e	ENSGT00940000160282 #17	ENSGT00940000153272.a.b.o.b.b	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975.g #19	ENSGT00490000044176.b.b	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00910000146944	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00530000063786.a.m	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT01040000240967	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493
Pan	ANCESTRAL SPECIES	2	ENSGT00940000154477.i	ENSGT00940000156324	ENSGT00390000017955.c.s.b	ENSGT00940000164367	ENSGT00530000064266.e	ENSGT00940000160282 #17	ENSGT00940000153272.a.b.o.b.b	ENSGT00950000183062.a.a.a #18	ENSGT00440000039029.g.b	ENSGT00490000044176.b.b	ENSGT00940000160975.g #19	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.b.c.b.b	ENSGT00940000158065 #20	ENSGT00940000153510.a.f	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00910000146944	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00530000063786.a.m	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT01040000240967	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493
Chimpanzee	MODERN SPECIES	16	ENSPTRG00000046458	ENSPTRG00000045243	ENSPTRG00000045768	ENSPTRG00000042566	ENSPTRG00000049296	CNTN3 (ENSPTRG00000015111) #17	ENSPTRG00000045687	PDZRN3 (ENSPTRG00000015109) #18	ENSPTRG00000043397	ENSPTRG00000040549	ENSPTRG00000049304	PPP4R2 (ENSPTRG00000015108) #20	ENSPTRG00000048729	ENSPTRG00000044295	SHQ1 (ENSPTRG00000015106) #21	RYBP (ENSPTRG00000051886) #22	PROK2 (ENSPTRG00000015104) #23	ENSPTRG00000048214	GPR27 (ENSPTRG00000015103) #24	EIF4E3 (ENSPTRG00000015102) #25	FOXP1 (ENSPTRG00000015101) #26	MDFIC2 (ENSPTRG00000044422) #27	ENSPTRG00000044227	MITF (ENSPTRG00000015100) #28	FRMD4B (ENSPTRG00000015098) #29	LMOD3 (ENSPTRG00000015097)	ARL6IP5 (ENSPTRG00000015096) #16	ENSPTRG00000048155	UBA3 (ENSPTRG00000015095)	TMF1 (ENSPTRG00000015094)	EOGT (ENSPTRG00000015092)
Bonobo	MODERN SPECIES	16	ENSPPAG00000041147	ENSPPAG00000038879	FRG2C (ENSPPAG00000034046)	HIC2 (ENSPPAG00000037732)	ENSPPAG00000026052	CNTN3 (ENSPPAG00000028261) #17	ENSPPAG00000020828	PDZRN3 (ENSPPAG00000037945) #18	ENSPPAG00000022036	EBLN2 (ENSPPAG00000043421)	PPP4R2 (ENSPPAG00000042397) #19	ENSPPAG00000009897	GXYLT2 (ENSPPAG00000037639) #20	ENSPPAG00000029534	SHQ1 (ENSPPAG00000027714) #21	RYBP (ENSPPAG00000039197) #22	PROK2 (ENSPPAG00000038388) #23	ENSPPAG00000038441	ENSPPAG00000035020 #25	FOXP1 (ENSPPAG00000039148) #26	MDFIC2 (ENSPPAG00000036914) #27	ENSPPAG00000030278	MITF (ENSPPAG00000041237) #28	FRMD4B (ENSPPAG00000021170) #29	LMOD3 (ENSPPAG00000033796)	ARL6IP5 (ENSPPAG00000033634) #16	UBA3 (ENSPPAG00000031816)	TMF1 (ENSPPAG00000042538)	EOGT (ENSPPAG00000040173)	TAFA4 (ENSPPAG00000038870)	ENSPPAG00000032744
Human	MODERN SPECIES	15	POU1F1 (ENSG00000064835)	CHMP2B (ENSG00000083937)	VGLL3 (ENSG00000206538)	CADM2 (ENSG00000175161)	GBE1 (ENSG00000114480)	ROBO1 (ENSG00000169855)	ROBO2 (ENSG00000185008)	ZNF717 (ENSG00000227124)	FRG2C (ENSG00000172969)	CNTN3 (ENSG00000113805) #17	PDZRN3 (ENSG00000121440) #18	EBLN2 (ENSG00000255423)	PPP4R2 (ENSG00000163605) #19	GXYLT2 (ENSG00000172986) #20	SHQ1 (ENSG00000144736) #21	RYBP (ENSG00000163602) #22	PROK2 (ENSG00000163421) #23	GPR27 (ENSG00000170837) #24	EIF4E3 (ENSG00000163412) #25	ENSG00000285708	FOXP1 (ENSG00000114861) #26	MDFIC2 (ENSG00000242120) #27	MITF (ENSG00000187098) #28	FRMD4B (ENSG00000114541) #29	LMOD3 (ENSG00000163380)	ARL6IP5 (ENSG00000144746) #16	UBA3 (ENSG00000144744)	TMF1 (ENSG00000144747)	EOGT (ENSG00000163378)	TAFA4 (ENSG00000163377)	TAFA1 (ENSG00000183662)
Laurasiatheria	ANCESTRAL SPECIES	2	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00940000165570	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00910000146944	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00650000094763	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000013995.b.a #22
Hedgehog	DUPLICATION
Hedgehog	MODERN SPECIES	10724																ENSEEUG00000003601 #22
Hedgehog	MODERN SPECIES	5610																ENSEEUG00000011620 #22
Common shrew	MODERN SPECIES	4363																RYBP (ENSSARG00000011312) #22
Laurasiatheria_a	ANCESTRAL SPECIES	3	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00940000165570	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00910000146944	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00650000094763	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882
Laurasiatheria_b	ANCESTRAL SPECIES	2	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00940000165570	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00910000146944	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00650000094763	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882
Laurasiatheria_c	ANCESTRAL SPECIES	2	ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607	ENSGT00390000010170.a.a
Equus	ANCESTRAL SPECIES	5	ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607	ENSGT00940000163880
Donkey	MODERN SPECIES	13	SUMF1 (ENSEASG00005003601)	ENSEASG00005032131	LRRN1 (ENSEASG00005003592)	CRBN (ENSEASG00005003584) #8	TRNT1 (ENSEASG00005003577) #9	IL5RA (ENSEASG00005003564) #10	CNTN4 (ENSEASG00005003558) #11	CNTN6 (ENSEASG00005003549) #13	ENSEASG00005032406	ENSEASG00005002560 #15	ENSEASG00005002280 #17	PDZRN3 (ENSEASG00005002263) #18	PPP4R2 (ENSEASG00005002252) #19	GXYLT2 (ENSEASG00005002247) #20	SHQ1 (ENSEASG00005002237) #21	RYBP (ENSEASG00005029789) #22	PROK2 (ENSEASG00005033363) #23	GPR27 (ENSEASG00005027995) #24	EIF4E3 (ENSEASG00005002204) #25	FOXP1 (ENSEASG00005002186) #26	MDFIC2 (ENSEASG00005002178) #27	MITF (ENSEASG00005002172) #28	FRMD4B (ENSEASG00005002162) #29	LMOD3 (ENSEASG00005002161)	ARL6IP5 (ENSEASG00005031455) #16	UBA3 (ENSEASG00005002027)	TMF1 (ENSEASG00005001971)	EOGT (ENSEASG00005001959)	TAFA4 (ENSEASG00005034543)	ENSEASG00005030093	SUCLG2 (ENSEASG00005001928)
Horse	MODERN SPECIES	7	SUMF1 (ENSECAG00000020242)	ENSECAG00000011514	LRRN1 (ENSECAG00000002874)	CRBN (ENSECAG00000015422) #8	TRNT1 (ENSECAG00000014420) #9	IL5RA (ENSECAG00000022503) #10	CNTN4 (ENSECAG00000009769) #11	CNTN6 (ENSECAG00000015975) #13	ENSECAG00000027842	CHL1 (ENSECAG00000024808) #15	CNTN3 (ENSECAG00000013575) #17	PDZRN3 (ENSECAG00000014864) #18	PPP4R2 (ENSECAG00000000689) #19	GXYLT2 (ENSECAG00000008483) #20	SHQ1 (ENSECAG00000015673) #21	RYBP (ENSECAG00000000266) #22	GPR27 (ENSECAG00000032664) #24	EIF4E3 (ENSECAG00000004471) #25	FOXP1 (ENSECAG00000008974) #26	ENSECAG00000054670	MDFIC2 (ENSECAG00000029574) #27	MITF (ENSECAG00000005360) #28	FRMD4B (ENSECAG00000016131) #29	LMOD3 (ENSECAG00000008709)	UBA3 (ENSECAG00000009659)	TMF1 (ENSECAG00000023300)	EOGT (ENSECAG00000012398)	TAFA4 (ENSECAG00000038857)	TAFA1 (ENSECAG00000032991)	ENSECAG00000029066	SUCLG2 (ENSECAG00000023254)
Chiroptera	ANCESTRAL SPECIES	49													ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607	ENSGT00390000010170.a.a
Megabat	MODERN SPECIES	6134																RYBP (ENSPVAG00000012905) #22
Microchiroptera	ANCESTRAL SPECIES	47													ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607	ENSGT00390000010170.a.a
Microbat	DUPLICATION
Microbat	MODERN SPECIES	1446														SHQ1 (ENSMLUG00000013539) #21	ENSMLUG00000030065	ENSMLUG00000012636 #22
Microbat	MODERN SPECIES	1497											CCDC167 (ENSMLUG00000006762)	ENSMLUG00000006730	RNF8 (ENSMLUG00000013604)	TBC1D22B (ENSMLUG00000010533)	TMEM217 (ENSMLUG00000023321)	ENSMLUG00000015085 #22	PIM1 (ENSMLUG00000014481)	FGD2 (ENSMLUG00000001942)
Greater horseshoe bat	MODERN SPECIES	8											ENSRFEG00010017338	PPP4R2 (ENSRFEG00010017298) #19	GXYLT2 (ENSRFEG00010017092) #20	SHQ1 (ENSRFEG00010017046) #21	ENSRFEG00010017032	RYBP (ENSRFEG00010017002) #22	ENSRFEG00010016965	PROK2 (ENSRFEG00010016865) #23	GPR27 (ENSRFEG00010016845) #24	EIF4E3 (ENSRFEG00010016785) #25	ENSRFEG00010016733	FOXP1 (ENSRFEG00010016312) #26	MDFIC2 (ENSRFEG00010016226) #27	MITF (ENSRFEG00010015864) #28	FRMD4B (ENSRFEG00010015709) #29	LMOD3 (ENSRFEG00010015673)	ARL6IP5 (ENSRFEG00010015607) #16	UBA3 (ENSRFEG00010015449)	TMF1 (ENSRFEG00010014693)	EOGT (ENSRFEG00010014576)	TAFA4 (ENSRFEG00010014473)
Carnivora	ANCESTRAL SPECIES	6	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00940000165570	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00910000146944	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00650000094763	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882
Caniformia	ANCESTRAL SPECIES	4	ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606.d #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00910000146944	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00650000094763	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882
Canidae	ANCESTRAL SPECIES		ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606.d #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00650000094763	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000163880
Red fox	MODERN SPECIES	5	ENSVVUG00000012624	LRRN1 (ENSVVUG00000012640)	CRBN (ENSVVUG00000012661) #8	TRNT1 (ENSVVUG00000012810) #9	IL5RA (ENSVVUG00000012836) #10	CNTN4 (ENSVVUG00000012913) #11	CNTN6 (ENSVVUG00000013018) #13	CHL1 (ENSVVUG00000013809) #15	ENSVVUG00000013836	CNTN3 (ENSVVUG00000013866) #17	ENSVVUG00000013879 #18	ENSVVUG00000013883	PPP4R2 (ENSVVUG00000013896) #19	GXYLT2 (ENSVVUG00000013899) #20	SHQ1 (ENSVVUG00000013906) #21	RYBP (ENSVVUG00000013920) #22	PROK2 (ENSVVUG00000013944) #23	ENSVVUG00000013947 #25	ENSVVUG00000013952	FOXP1 (ENSVVUG00000013954) #26	MDFIC2 (ENSVVUG00000013970) #27	MITF (ENSVVUG00000013975) #28	FRMD4B (ENSVVUG00000014012) #29	LMOD3 (ENSVVUG00000014067)	ARL6IP5 (ENSVVUG00000014070) #16	UBA3 (ENSVVUG00000014100)	TMF1 (ENSVVUG00000014445)	EOGT (ENSVVUG00000014456)	FAM19A4 (ENSVVUG00000014489)	ENSVVUG00000014499	SUCLG2 (ENSVVUG00000014528)
Canis_lupus	ANCESTRAL SPECIES	1	ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606.d #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607	ENSGT00390000010170.a.a
Dingo	MODERN SPECIES	401														PPP4R2 (ENSCAFG00020016753) #19	SHQ1 (ENSCAFG00020016743) #21	RYBP (ENSCAFG00020016734) #22	PROK2 (ENSCAFG00020016730) #23	GPR27 (ENSCAFG00020016727) #24	EIF4E3 (ENSCAFG00020016724) #25	FOXP1 (ENSCAFG00020012311) #26	MDFIC2 (ENSCAFG00020012180) #27	MITF (ENSCAFG00020012176) #28	FRMD4B (ENSCAFG00020012082) #29	LMOD3 (ENSCAFG00020012071)	ARL6IP5 (ENSCAFG00020012069) #16	UBA3 (ENSCAFG00020012058)	TMF1 (ENSCAFG00020011872)	EOGT (ENSCAFG00020011855)	ENSCAFG00020011853	TAFA4 (ENSCAFG00020011851)	ENSCAFG00020011847
Dog	MODERN SPECIES	12	LRRN1 (ENSCAFG00845012344)	ENSCAFG00845012385	CRBN (ENSCAFG00845012410) #8	TRNT1 (ENSCAFG00845012496) #9	IL5RA (ENSCAFG00845012603) #10	CNTN4 (ENSCAFG00845012710) #11	CNTN6 (ENSCAFG00845005936) #13	ENSCAFG00845006097 #15	ENSCAFG00845006445	ENSCAFG00845006474	CNTN3 (ENSCAFG00845006575) #17	PDZRN3 (ENSCAFG00845006843) #18	PPP4R2 (ENSCAFG00845007022) #19	GXYLT2 (ENSCAFG00845007149) #20	SHQ1 (ENSCAFG00845007261) #21	ENSCAFG00845007398 #22	PROK2 (ENSCAFG00845007491) #23	GPR27 (ENSCAFG00845007528) #24	ENSCAFG00845007732 #25	FOXP1 (ENSCAFG00845008552) #26	MDFIC2 (ENSCAFG00845009570) #27	MITF (ENSCAFG00845009666) #28	FRMD4B (ENSCAFG00845010033) #29	LMOD3 (ENSCAFG00845010392)	ARL6IP5 (ENSCAFG00845010437) #16	UBA3 (ENSCAFG00845010556)	TMF1 (ENSCAFG00845010825)	EOGT (ENSCAFG00845010941)	TAFA4 (ENSCAFG00845011056)	TAFA1 (ENSCAFG00845011082)	SUCLG2 (ENSCAFG00845011161)
Caniformia_b	ANCESTRAL SPECIES	16	ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606.d #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00910000146944	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000163880
Ursidae	ANCESTRAL SPECIES	11	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606.d #13	ENSGT00940000160080.b #15	ENSGT00390000000263.fb.a	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00940000173944	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a.l #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607	ENSGT00390000010170.a.a
Ursus	ANCESTRAL SPECIES	89			ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606.d #13	ENSGT00940000160080.b #15	ENSGT00390000000263.fb.a	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00940000173944	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a.l #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000163880	ENSGT00390000010170.a.a
Polar bear	MODERN SPECIES	251			CRBN (ENSUMAG00000024093) #8	TRNT1 (ENSUMAG00000024092) #9	IL5RA (ENSUMAG00000024091) #10	CNTN4 (ENSUMAG00000024088) #11	CNTN6 (ENSUMAG00000024080) #13	CHL1 (ENSUMAG00000024060) #15	ENSUMAG00000024046	CNTN3 (ENSUMAG00000024039) #17	PDZRN3 (ENSUMAG00000024035) #18	PPP4R2 (ENSUMAG00000024034) #19	GXYLT2 (ENSUMAG00000024033) #20	SHQ1 (ENSUMAG00000024031) #21	ENSUMAG00000024029	RYBP (ENSUMAG00000024028) #22	PROK2 (ENSUMAG00000024025) #23	EIF4E3 (ENSUMAG00000024023) #25	FOXP1 (ENSUMAG00000024020) #26	MDFIC2 (ENSUMAG00000024017) #27	MITF (ENSUMAG00000024001) #28	FRMD4B (ENSUMAG00000023999) #29	ENSUMAG00000023998	LMOD3 (ENSUMAG00000023997)	ARL6IP5 (ENSUMAG00000023996) #16	UBA3 (ENSUMAG00000023994)	TMF1 (ENSUMAG00000023989)	EOGT (ENSUMAG00000023987)	TAFA4 (ENSUMAG00000023986)	ENSUMAG00000023985	SUCLG2 (ENSUMAG00000023841)
American black bear	MODERN SPECIES	2642																RYBP (ENSUAMG00000008323) #22
Giant Panda	MODERN SPECIES	14	ENSAMEG00000015893	LRRN1 (ENSAMEG00000018835)	CRBN (ENSAMEG00000014541) #8	TRNT1 (ENSAMEG00000014520) #9	IL5RA (ENSAMEG00000014490) #10	CNTN4 (ENSAMEG00000014387) #11	CNTN6 (ENSAMEG00000014259) #13	ENSAMEG00000013402 #15	ENSAMEG00000023576	ENSAMEG00000011395 #17	PDZRN3 (ENSAMEG00000025975) #18	PPP4R2 (ENSAMEG00000015164) #19	GXYLT2 (ENSAMEG00000015150) #20	SHQ1 (ENSAMEG00000015140) #21	ENSAMEG00000015139	RYBP (ENSAMEG00000015131) #22	PROK2 (ENSAMEG00000028947) #23	EIF4E3 (ENSAMEG00000015115) #25	FOXP1 (ENSAMEG00000015051) #26	MDFIC2 (ENSAMEG00000025889) #27	MITF (ENSAMEG00000017117) #28	FRMD4B (ENSAMEG00000010064) #29	LMOD3 (ENSAMEG00000010109)	ARL6IP5 (ENSAMEG00000010112) #16	UBA3 (ENSAMEG00000010117)	TMF1 (ENSAMEG00000010131)	EOGT (ENSAMEG00000010169)	ENSAMEG00000028238	TAFA1 (ENSAMEG00000025281)	SUCLG2 (ENSAMEG00000002805)	ENSAMEG00000004042
Mustelinae	ANCESTRAL SPECIES	18	ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606.d #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00910000146944	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831.b	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000163880
Ferret	MODERN SPECIES	163	CRBN (ENSMPUG00000017018) #8	TRNT1 (ENSMPUG00000017017) #9	IL5RA (ENSMPUG00000017016) #10	CNTN4 (ENSMPUG00000017015) #11	CNTN6 (ENSMPUG00000017014) #13	ENSMPUG00000020110	CHL1 (ENSMPUG00000017013) #15	ENSMPUG00000017012	ENSMPUG00000020109	CNTN3 (ENSMPUG00000017011) #17	ENSMPUG00000017010	PDZRN3 (ENSMPUG00000017009) #18	PPP4R2 (ENSMPUG00000017008) #19	GXYLT2 (ENSMPUG00000017007) #20	SHQ1 (ENSMPUG00000017006) #21	RYBP (ENSMPUG00000017004) #22	PROK2 (ENSMPUG00000017003) #23	EIF4E3 (ENSMPUG00000017002) #25	FOXP1 (ENSMPUG00000017001) #26	MITF (ENSMPUG00000016972) #28	FRMD4B (ENSMPUG00000016969) #29	LMOD3 (ENSMPUG00000016967)	ARL6IP5 (ENSMPUG00000016965) #16	UBA3 (ENSMPUG00000016958)	TMF1 (ENSMPUG00000016957)	EOGT (ENSMPUG00000016952)	TAFA4 (ENSMPUG00000016951)	SUCLG2 (ENSMPUG00000016950)	KBTBD8 (ENSMPUG00000016949)	ENSMPUG00000016948	ENSMPUG00000016947
American mink	MODERN SPECIES	59							ENSNVIG00000003627 #11	CNTN6 (ENSNVIG00000003539) #13	CHL1 (ENSNVIG00000003410) #15	ENSNVIG00000003360	CNTN3 (ENSNVIG00000003301) #17	PDZRN3 (ENSNVIG00000003190) #18	ENSNVIG00000003138	GXYLT2 (ENSNVIG00000003130) #20	SHQ1 (ENSNVIG00000003089) #21	RYBP (ENSNVIG00000003061) #22	PROK2 (ENSNVIG00000003030) #23	ENSNVIG00000003023	GPR27 (ENSNVIG00000003017) #24	EIF4E3 (ENSNVIG00000002988) #25	ENSNVIG00000002970	FOXP1 (ENSNVIG00000001998) #26	MDFIC2 (ENSNVIG00000001956) #27	MITF (ENSNVIG00000001792) #28	FRMD4B (ENSNVIG00000001725) #29
Felidae	ANCESTRAL SPECIES	17	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00390000008694.b.b.d	ENSGT00940000160282 #17	ENSGT00940000165570	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607	ENSGT00390000010170.a.a
Panthera	ANCESTRAL SPECIES	1	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00390000008694.b.b.d	ENSGT00940000160282 #17	ENSGT00940000165570	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607	ENSGT00390000010170.a.a
Tiger	MODERN SPECIES	84				LRRN1 (ENSPTIG00000003044)	CRBN (ENSPTIG00000009377) #8	TRNT1 (ENSPTIG00000011448) #9	IL5RA (ENSPTIG00000012294) #10	CNTN4 (ENSPTIG00000015205) #11	CNTN6 (ENSPTIG00000020221) #13	CHL1 (ENSPTIG00000020653) #15	CNTN3 (ENSPTIG00000009144) #17	PDZRN3 (ENSPTIG00000009301) #18	PPP4R2 (ENSPTIG00000009981) #19	GXYLT2 (ENSPTIG00000010984) #20	SHQ1 (ENSPTIG00000011478) #21	RYBP (ENSPTIG00000012035) #22	PROK2 (ENSPTIG00000012482) #23	EIF4E3 (ENSPTIG00000012645) #25	FOXP1 (ENSPTIG00000013377) #26	MDFIC2 (ENSPTIG00000018110) #27	MITF (ENSPTIG00000018345) #28
Panthera_a	ANCESTRAL SPECIES		ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00940000165570	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607	ENSGT00390000010170.a.a
leopard	MODERN SPECIES	116							CHL1 (ENSPPRG00000004383) #15	ENSPPRG00000004436	CNTN3 (ENSPPRG00000004510) #17	ENSPPRG00000004594	PDZRN3 (ENSPPRG00000004645) #18	PPP4R2 (ENSPPRG00000004654) #19	GXYLT2 (ENSPPRG00000004662) #20	ENSPPRG00000004671	SHQ1 (ENSPPRG00000004769) #21	RYBP (ENSPPRG00000004794) #22	PROK2 (ENSPPRG00000004876) #23	GPR27 (ENSPPRG00000012074) #24	EIF4E3 (ENSPPRG00000004898) #25	FOXP1 (ENSPPRG00000004953) #26	MDFIC2 (ENSPPRG00000004980) #27	MITF (ENSPPRG00000005395) #28
lion	MODERN SPECIES	2	ENSPLOG00000003853	LRRN1 (ENSPLOG00000003838)	CRBN (ENSPLOG00000003808) #8	TRNT1 (ENSPLOG00000003771) #9	IL5RA (ENSPLOG00000003728) #10	CNTN4 (ENSPLOG00000003617) #11	ENSPLOG00000003587	CNTN6 (ENSPLOG00000003490) #13	ENSPLOG00000003473	CHL1 (ENSPLOG00000003228) #15	CNTN3 (ENSPLOG00000003083) #17	PDZRN3 (ENSPLOG00000003033) #18	PPP4R2 (ENSPLOG00000002914) #19	GXYLT2 (ENSPLOG00000002888) #20	SHQ1 (ENSPLOG00000002849) #21	RYBP (ENSPLOG00000002820) #22	PROK2 (ENSPLOG00000002807) #23	GPR27 (ENSPLOG00000002789) #24	EIF4E3 (ENSPLOG00000002754) #25	FOXP1 (ENSPLOG00000002481) #26	MDFIC2 (ENSPLOG00000002362) #27	MITF (ENSPLOG00000002275) #28	FRMD4B (ENSPLOG00000002200) #29	LMOD3 (ENSPLOG00000002158)	ARL6IP5 (ENSPLOG00000002134) #16	UBA3 (ENSPLOG00000001974)	TMF1 (ENSPLOG00000001823)	EOGT (ENSPLOG00000001756)	TAFA4 (ENSPLOG00000001723)	TAFA1 (ENSPLOG00000001704)	SUCLG2 (ENSPLOG00000001663)
Cat	MODERN SPECIES	1	LRRN1 (ENSFCAG00000029530)	CRBN (ENSFCAG00000026512) #8	TRNT1 (ENSFCAG00000026805) #9	IL5RA (ENSFCAG00000000652) #10	CNTN4 (ENSFCAG00000000649) #11	ENSFCAG00000052641	CNTN6 (ENSFCAG00000015456) #13	ENSFCAG00000034166	CHL1 (ENSFCAG00000011105) #15	ENSFCAG00000005652	CNTN3 (ENSFCAG00000012778) #17	PDZRN3 (ENSFCAG00000040417) #18	PPP4R2 (ENSFCAG00000029481) #19	GXYLT2 (ENSFCAG00000011005) #20	SHQ1 (ENSFCAG00000012781) #21	RYBP (ENSFCAG00000043691) #22	PROK2 (ENSFCAG00000032697) #23	GPR27 (ENSFCAG00000041717) #24	EIF4E3 (ENSFCAG00000025548) #25	FOXP1 (ENSFCAG00000023059) #26	MDFIC2 (ENSFCAG00000026251) #27	MITF (ENSFCAG00000024419) #28	ENSFCAG00000034689	FRMD4B (ENSFCAG00000009021) #29	LMOD3 (ENSFCAG00000009020)	ARL6IP5 (ENSFCAG00000041359) #16	UBA3 (ENSFCAG00000023111)	TMF1 (ENSFCAG00000027162)	EOGT (ENSFCAG00000006082)	TAFA4 (ENSFCAG00000031787)	TAFA1 (ENSFCAG00000041196)
Artiodactyla	ANCESTRAL SPECIES	2	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT01000000221469	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00940000165570	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607	ENSGT00390000010170.a.a
Suina	ANCESTRAL SPECIES	1	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT01000000221469	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607	ENSGT00390000010170.a.a
Chacoan peccary	MODERN SPECIES	950	SUMF1 (ENSCWAG00000021351)	ENSCWAG00000021337	LRRN1 (ENSCWAG00000021333)	CRBN (ENSCWAG00000021315) #8	TRNT1 (ENSCWAG00000021303) #9	IL5RA (ENSCWAG00000021262) #10	CNTN4 (ENSCWAG00000021224) #11	ENSCWAG00000021205	CNTN6 (ENSCWAG00000021190) #13	CHL1 (ENSCWAG00000021043) #15	CNTN3 (ENSCWAG00000020972) #17	PDZRN3 (ENSCWAG00000020942) #18	PPP4R2 (ENSCWAG00000020926) #19	GXYLT2 (ENSCWAG00000020910) #20	SHQ1 (ENSCWAG00000020894) #21	RYBP (ENSCWAG00000020884) #22	PROK2 (ENSCWAG00000020863) #23	GPR27 (ENSCWAG00000020855) #24	EIF4E3 (ENSCWAG00000020836) #25	FOXP1 (ENSCWAG00000019255) #26	MDFIC2 (ENSCWAG00000019169) #27	MITF (ENSCWAG00000018514) #28	FRMD4B (ENSCWAG00000018343) #29	LMOD3 (ENSCWAG00000018312)	ARL6IP5 (ENSCWAG00000018288) #16	UBA3 (ENSCWAG00000017763)	TMF1 (ENSCWAG00000017660)	EOGT (ENSCWAG00000017579)	TAFA4 (ENSCWAG00000017540)	TAFA1 (ENSCWAG00000017513)	SUCLG2 (ENSCWAG00000017444)
Pig	MODERN SPECIES	4	CNTN6 (ENSSSCG00000038152) #13	CHL1 (ENSSSCG00000011524) #15	ENSSSCG00000050663	ENSSSCG00000048446	ENSSSCG00000058117	ENSSSCG00000048746	CNTN3 (ENSSSCG00000011522) #17	ENSSSCG00000047664	ENSSSCG00000051504	ENSSSCG00000047927	PDZRN3 (ENSSSCG00000011521) #18	ENSSSCG00000041059	PPP4R2 (ENSSSCG00000037216) #19	GXYLT2 (ENSSSCG00000011519) #20	SHQ1 (ENSSSCG00000011518) #21	RYBP (ENSSSCG00000025053) #22	PROK2 (ENSSSCG00000026200) #23	GPR27 (ENSSSCG00000036580) #24	EIF4E3 (ENSSSCG00000011516) #25	FOXP1 (ENSSSCG00000027675) #26	MDFIC2 (ENSSSCG00000060340) #27	ENSSSCG00000045079	MITF (ENSSSCG00000011514) #28	FRMD4B (ENSSSCG00000011511) #29	LMOD3 (ENSSSCG00000052599)	ARL6IP5 (ENSSSCG00000033154) #16	UBA3 (ENSSSCG00000011506)	TMF1 (ENSSSCG00000011510)	EOGT (ENSSSCG00000011504)	TAFA4 (ENSSSCG00000033199)	ENSSSCG00000036134
Artiodactyla_a	ANCESTRAL SPECIES	18	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT01000000221469	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00940000165570	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607	ENSGT00390000010170.a.a
Camelidae	ANCESTRAL SPECIES	7	ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607	ENSGT00390000010170.a.a
Arabian camel	MODERN SPECIES	8	ENSCDRG00005006638	LRRN1 (ENSCDRG00005006616)	CRBN (ENSCDRG00005006474) #8	IL5RA (ENSCDRG00005006219) #10	TRNT1 (ENSCDRG00005006181) #9	CNTN4 (ENSCDRG00005006128) #11	ENSCDRG00005006107	CNTN6 (ENSCDRG00005006079) #13	CHL1 (ENSCDRG00005005966) #15	ENSCDRG00005005931	CNTN3 (ENSCDRG00005005902) #17	PDZRN3 (ENSCDRG00005005789) #18	PPP4R2 (ENSCDRG00005005747) #19	GXYLT2 (ENSCDRG00005005730) #20	SHQ1 (ENSCDRG00005005675) #21	RYBP (ENSCDRG00005005642) #22	PROK2 (ENSCDRG00005005609) #23	GPR27 (ENSCDRG00005005582) #24	EIF4E3 (ENSCDRG00005005567) #25	FOXP1 (ENSCDRG00005003812) #26	MDFIC2 (ENSCDRG00005003702) #27	MITF (ENSCDRG00005003570) #28	FRMD4B (ENSCDRG00005003460) #29	LMOD3 (ENSCDRG00005003378)	ARL6IP5 (ENSCDRG00005021188) #16	UBA3 (ENSCDRG00005021145)	TMF1 (ENSCDRG00005021118)	EOGT (ENSCDRG00005021103)	TAFA4 (ENSCDRG00005021091)	TAFA1 (ENSCDRG00005021082)	SUCLG2 (ENSCDRG00005021068)
Alpaca	MODERN SPECIES	4562																RYBP (ENSVPAG00000007715) #22
Artiodactyla_b	ANCESTRAL SPECIES	21	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT01000000221469	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00940000165570	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607	ENSGT00390000010170.a.a
Cetacea	ANCESTRAL SPECIES	7	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT01000000221469	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000006922.m.b.a.d	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607	ENSGT00390000010170.a.a
Odontoceti	ANCESTRAL SPECIES	5	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT01000000221469	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00390000012652.ab.a.k	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000006922.m.b.a.d	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607	ENSGT00390000010170.a.a
Sperm whale	MODERN SPECIES	9	IL5RA (ENSPCTG00005011305) #10	CNTN4 (ENSPCTG00005011901) #11	CNTN6 (ENSPCTG00005016124) #13	ENSPCTG00005016393 #37	CHL1 (ENSPCTG00005016433) #15	ENSPCTG00005016580	CNTN3 (ENSPCTG00005016649) #17	ENSPCTG00005016762	PDZRN3 (ENSPCTG00005016884) #18	ENSPCTG00005017078	ENSPCTG00005017126	PPP4R2 (ENSPCTG00005017140) #19	GXYLT2 (ENSPCTG00005017189) #20	SHQ1 (ENSPCTG00005017281) #21	ENSPCTG00005008959	RYBP (ENSPCTG00005008989) #22	PROK2 (ENSPCTG00005009087) #23	GPR27 (ENSPCTG00005009164) #24	EIF4E3 (ENSPCTG00005009184) #25	FOXP1 (ENSPCTG00005009284) #26	MDFIC2 (ENSPCTG00005009636) #27	MITF (ENSPCTG00005009685) #28	ENSPCTG00005009977	FRMD4B (ENSPCTG00005010026) #29	LMOD3 (ENSPCTG00005010268)	ARL6IP5 (ENSPCTG00005010327) #16	UBA3 (ENSPCTG00005010435)	TMF1 (ENSPCTG00005010922)	EOGT (ENSPCTG00005011366)	TAFA4 (ENSPCTG00005011477)	TAFA1 (ENSPCTG00005011548)
Odontoceti_a	ANCESTRAL SPECIES	5	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT01000000221469	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00390000012652.ab.a.k	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000006922.m.b.a.d	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607	ENSGT00390000010170.a.a
Dolphin	MODERN SPECIES	4653															SHQ1 (ENSTTRG00000005320) #21	RYBP (ENSTTRG00000005375) #22
Odontoceti_b	ANCESTRAL SPECIES	6	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT01000000221469	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000168733	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00390000012652.ab.a.k	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000006922.m.b.a.d	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607	ENSGT00390000010170.a.a
Monodontidae	ANCESTRAL SPECIES	4	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT01000000221469	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000168733	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00390000012652.ab.a.k	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000006922.m.b.a.d	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607	ENSGT00390000010170.a.a
Narwhal	MODERN SPECIES	310	IL5RA (ENSMMNG00015021373) #10	CNTN4 (ENSMMNG00015021354) #11	ENSMMNG00015021339	CNTN6 (ENSMMNG00015021308) #13	CHL1 (ENSMMNG00015021112) #15	ENSMMNG00015020993	CNTN3 (ENSMMNG00015020954) #17	ENSMMNG00015020932	ENSMMNG00015020925	PDZRN3 (ENSMMNG00015020829) #18	ENSMMNG00015020797	PPP4R2 (ENSMMNG00015020763) #19	GXYLT2 (ENSMMNG00015020737) #20	SHQ1 (ENSMMNG00015020699) #21	ENSMMNG00015020691	RYBP (ENSMMNG00015020675) #22	PROK2 (ENSMMNG00015020659) #23	GPR27 (ENSMMNG00015020647) #24	EIF4E3 (ENSMMNG00015020620) #25	ENSMMNG00015020607	FOXP1 (ENSMMNG00015020256) #26	MDFIC2 (ENSMMNG00015020084) #27	MITF (ENSMMNG00015020021) #28	FRMD4B (ENSMMNG00015019966) #29	LMOD3 (ENSMMNG00015019939)	ARL6IP5 (ENSMMNG00015019913) #16	UBA3 (ENSMMNG00015019640)	TMF1 (ENSMMNG00015019536)	EOGT (ENSMMNG00015019482)	ENSMMNG00015019447	TAFA4 (ENSMMNG00015019429)
Beluga whale	MODERN SPECIES	28	CRBN (ENSDLEG00000004288) #8	TRNT1 (ENSDLEG00000004312) #9	IL5RA (ENSDLEG00000004345) #10	CNTN4 (ENSDLEG00000004410) #11	ENSDLEG00000004457	CNTN6 (ENSDLEG00000004824) #13	CHL1 (ENSDLEG00000007131) #15	ENSDLEG00000007271	CNTN3 (ENSDLEG00000007338) #17	ENSDLEG00000007610	PDZRN3 (ENSDLEG00000007615) #18	ENSDLEG00000007621	PPP4R2 (ENSDLEG00000007632) #20	SHQ1 (ENSDLEG00000007662) #21	ENSDLEG00000007675	RYBP (ENSDLEG00000007680) #22	PROK2 (ENSDLEG00000007684) #23	GPR27 (ENSDLEG00000007689) #24	EIF4E3 (ENSDLEG00000007693) #25	FOXP1 (ENSDLEG00000007703) #26	MDFIC2 (ENSDLEG00000007714) #27	MITF (ENSDLEG00000007717) #28	ENSDLEG00000007725	FRMD4B (ENSDLEG00000007734) #29	LMOD3 (ENSDLEG00000007747)	ARL6IP5 (ENSDLEG00000007750) #16	UBA3 (ENSDLEG00000007767)	TMF1 (ENSDLEG00000007791)	EOGT (ENSDLEG00000007861)	TAFA4 (ENSDLEG00000007891)	ENSDLEG00000007893
Vaquita	MODERN SPECIES	2	TRNT1 (ENSPSNG00000021385) #9	IL5RA (ENSPSNG00000021430) #10	CNTN4 (ENSPSNG00000021522) #11	ENSPSNG00000021554	CNTN6 (ENSPSNG00000021579) #13	CHL1 (ENSPSNG00000021694) #15	ENSPSNG00000021840	CNTN3 (ENSPSNG00000021869) #17	ENSPSNG00000021907	PDZRN3 (ENSPSNG00000021932) #18	ENSPSNG00000021970	PPP4R2 (ENSPSNG00000021989) #19	GXYLT2 (ENSPSNG00000022011) #20	SHQ1 (ENSPSNG00000022028) #21	ENSPSNG00000022044	RYBP (ENSPSNG00000022051) #22	PROK2 (ENSPSNG00000022078) #23	GPR27 (ENSPSNG00000022094) #24	EIF4E3 (ENSPSNG00000009818) #25	FOXP1 (ENSPSNG00000010176) #26	MDFIC2 (ENSPSNG00000011225) #27	MITF (ENSPSNG00000011317) #28	ENSPSNG00000011931	ENSPSNG00000011964	FRMD4B (ENSPSNG00000012000) #29	ENSPSNG00000012258	LMOD3 (ENSPSNG00000012275)	ARL6IP5 (ENSPSNG00000012328) #16	UBA3 (ENSPSNG00000012433)	TMF1 (ENSPSNG00000012619)	EOGT (ENSPSNG00000012709)
Blue whale	MODERN SPECIES	2	CRBN (ENSBMSG00010022093) #8	TRNT1 (ENSBMSG00010022089) #9	IL5RA (ENSBMSG00010022077) #10	CNTN4 (ENSBMSG00010022067) #11	CNTN6 (ENSBMSG00010022054) #13	CHL1 (ENSBMSG00010022027) #15	ENSBMSG00010022002	CNTN3 (ENSBMSG00010021994) #17	ENSBMSG00010021989	ENSBMSG00010021985	PDZRN3 (ENSBMSG00010021981) #18	PPP4R2 (ENSBMSG00010021970) #19	GXYLT2 (ENSBMSG00010021967) #20	SHQ1 (ENSBMSG00010021956) #21	ENSBMSG00010021950	RYBP (ENSBMSG00010021945) #22	PROK2 (ENSBMSG00010021941) #23	GPR27 (ENSBMSG00010021933) #24	EIF4E3 (ENSBMSG00010021929) #25	FOXP1 (ENSBMSG00010021028) #26	ENSBMSG00010020804	MDFIC2 (ENSBMSG00010020784) #27	MITF (ENSBMSG00010019612) #28	ENSBMSG00010019391	ENSBMSG00010019371	ENSBMSG00010019343	FRMD4B (ENSBMSG00010019228) #29	LMOD3 (ENSBMSG00010019153)	ARL6IP5 (ENSBMSG00010019130) #16	UBA3 (ENSBMSG00010018750)	TMF1 (ENSBMSG00010018575)
Pecora	ANCESTRAL SPECIES	17	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00940000165570	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607	ENSGT00390000010170.a.a
Yarkand deer	MODERN SPECIES	16	ENSCHYG00000026754	CRBN (ENSCHYG00000026738) #8	TRNT1 (ENSCHYG00000026731) #9	IL5RA (ENSCHYG00000026716) #10	CNTN4 (ENSCHYG00000026696) #11	ENSCHYG00000026687	ENSCHYG00000026685	CNTN6 (ENSCHYG00000026622) #13	ENSCHYG00000026610	CHL1 (ENSCHYG00000026559) #15	CNTN3 (ENSCHYG00000026470) #17	PDZRN3 (ENSCHYG00000026403) #18	PPP4R2 (ENSCHYG00000026369) #19	GXYLT2 (ENSCHYG00000026357) #20	SHQ1 (ENSCHYG00000026306) #21	RYBP (ENSCHYG00000026283) #22	PROK2 (ENSCHYG00000026260) #23	EIF4E3 (ENSCHYG00000026240) #25	FOXP1 (ENSCHYG00000024873) #26	ENSCHYG00000024728	MDFIC2 (ENSCHYG00000024686) #27	MITF (ENSCHYG00000024471) #28	ENSCHYG00000024373	ENSCHYG00000024354	FRMD4B (ENSCHYG00000023741) #29	LMOD3 (ENSCHYG00000023655)	ARL6IP5 (ENSCHYG00000023632) #16	UBA3 (ENSCHYG00000023036)	TMF1 (ENSCHYG00000022757)	EOGT (ENSCHYG00000022524)	TAFA4 (ENSCHYG00000022432)
Percora_a	ANCESTRAL SPECIES	19	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00940000165570	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607	ENSGT00390000010170.a.a
Siberian musk deer	MODERN SPECIES	1222									CHL1 (ENSMMSG00000016568) #15	ENSMMSG00000016517	CNTN3 (ENSMMSG00000016378) #17	PDZRN3 (ENSMMSG00000016262) #18	PPP4R2 (ENSMMSG00000016216) #19	GXYLT2 (ENSMMSG00000016163) #20	SHQ1 (ENSMMSG00000016133) #21	RYBP (ENSMMSG00000016107) #22	PROK2 (ENSMMSG00000016060) #23	GPR27 (ENSMMSG00000016039) #24	EIF4E3 (ENSMMSG00000015972) #25	FOXP1 (ENSMMSG00000014620) #26	MDFIC2 (ENSMMSG00000014534) #27	MITF (ENSMMSG00000013971) #28	FRMD4B (ENSMMSG00000013878) #29	LMOD3 (ENSMMSG00000013861)	ARL6IP5 (ENSMMSG00000013836) #16	UBA3 (ENSMMSG00000013729)	TMF1 (ENSMMSG00000013641)	EOGT (ENSMMSG00000021538)	TAFA4 (ENSMMSG00000021498)	TAFA1 (ENSMMSG00000021464)	SUCLG2 (ENSMMSG00000021420)
Bovidae	ANCESTRAL SPECIES	19	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00940000165570	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT00940000153886.a.a.k.b.b	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607
Caprinae	ANCESTRAL SPECIES	15	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00940000165570	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT00940000153886.a.a.k.b.b	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607
Goat	MODERN SPECIES	14	ENSCHIG00000019739	LRRN1 (ENSCHIG00000009563)	ENSCHIG00000017211	CRBN (ENSCHIG00000022897) #8	TRNT1 (ENSCHIG00000007030) #9	IL5RA (ENSCHIG00000011708) #10	CNTN4 (ENSCHIG00000018077) #11	CNTN6 (ENSCHIG00000024913) #13	CHL1 (ENSCHIG00000015409) #15	CNTN3 (ENSCHIG00000015485) #17	ENSCHIG00000022511	PDZRN3 (ENSCHIG00000018984) #18	PPP4R2 (ENSCHIG00000006838) #19	GXYLT2 (ENSCHIG00000011713) #20	SHQ1 (ENSCHIG00000012271) #21	RYBP (ENSCHIG00000026041) #22	ENSCHIG00000012364	PROK2 (ENSCHIG00000020872) #23	GPR27 (ENSCHIG00000006038) #24	EIF4E3 (ENSCHIG00000024333) #25	FOXP1 (ENSCHIG00000017707) #26	MDFIC2 (ENSCHIG00000017880) #27	MITF (ENSCHIG00000022111) #28	ENSCHIG00000014889	FRMD4B (ENSCHIG00000015488) #29	LMOD3 (ENSCHIG00000017627)	ARL6IP5 (ENSCHIG00000021517) #16	UBA3 (ENSCHIG00000015026)	TMF1 (ENSCHIG00000012583)	EOGT (ENSCHIG00000014149)	TAFA4 (ENSCHIG00000013665)
Rambouillet Sheep	MODERN SPECIES	10	SUMF1 (ENSOARG00020014038)	ENSOARG00020014205	LRRN1 (ENSOARG00020014291)	ENSOARG00020014311	CRBN (ENSOARG00020014355) #8	TRNT1 (ENSOARG00020014826) #9	CNTN4 (ENSOARG00020015064) #11	ENSOARG00020015490	CNTN6 (ENSOARG00020015543) #13	CHL1 (ENSOARG00020015831) #15	CNTN3 (ENSOARG00020016622) #17	PDZRN3 (ENSOARG00020016919) #18	PPP4R2 (ENSOARG00020017177) #19	GXYLT2 (ENSOARG00020017381) #20	SHQ1 (ENSOARG00020017477) #21	RYBP (ENSOARG00020017720) #22	PROK2 (ENSOARG00020017771) #23	GPR27 (ENSOARG00020017874) #24	FOXP1 (ENSOARG00020017991) #26	MDFIC2 (ENSOARG00020020710) #27	MITF (ENSOARG00020020821) #28	FRMD4B (ENSOARG00020021286) #29	ENSOARG00020021609	LMOD3 (ENSOARG00020021653)	ARL6IP5 (ENSOARG00020021679) #16	UBA3 (ENSOARG00020021782)	TMF1 (ENSOARG00020022407)	EOGT (ENSOARG00020022578)	TAFA1 (ENSOARG00020022813)	SUCLG2 (ENSOARG00020022864)	ENSOARG00020023030
Bovinae	ANCESTRAL SPECIES	16	ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT00940000153886.a.a.k.b.b	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607
Bos	ANCESTRAL SPECIES	16	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606.a.a #13	ENSGT00940000160606.b #13	ENSGT00940000160080 #15	ENSGT01100000263481.n.a.a.a.b.a.b.a.b.a.a.b.b.b.b	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT01100000263480.a.a.b.b.b.a.a.b.a.a.b.b.b.b.a.a.b	ENSGT00940000162026.b #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00390000004856.w.a.a.b.b.a.a	ENSGT00940000156326 #28	ENSGT00940000153886.a.a.k.b.b	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT01100000263480.a.a.b.b.b.a.a.b.a.a.b.a.a.a	ENSGT00550000074831	ENSGT00390000010697
Bos_a	ANCESTRAL SPECIES	9	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606.a.a #13	ENSGT00940000160606.b #13	ENSGT00940000160080 #15	ENSGT01100000263481.n.a.a.a.b.a.b.a.b.a.a.b.b.b.b	ENSGT00940000160282 #17	ENSGT00940000165570	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT01100000263480.a.a.b.b.b.a.a.b.a.a.b.b.b.b.a.a.b	ENSGT00940000162026.b #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00390000004856.w.a.a.b.b.a.a	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT01100000263480.a.a.b.b.b.a.a.b.a.a.b.a.a.a	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493
Wild yak	MODERN SPECIES	2547																RYBP (ENSBMUG00000026725) #22	PROK2 (ENSBMUG00000026726) #23	EIF4E3 (ENSBMUG00000026727) #25	FOXP1 (ENSBMUG00000026730) #26
Domestic yak	MODERN SPECIES	14	ENSBGRG00000022956	ENSBGRG00000022946	CNTN6 (ENSBGRG00000022913) #13	CHL1 (ENSBGRG00000022502) #15	ENSBGRG00000022415	CNTN3 (ENSBGRG00000022216) #17	ENSBGRG00000022179	ENSBGRG00000022160	PDZRN3 (ENSBGRG00000022106) #18	PPP4R2 (ENSBGRG00000022002) #19	ENSBGRG00000021987	GXYLT2 (ENSBGRG00000021905) #20	SHQ1 (ENSBGRG00000021832) #21	ENSBGRG00000021818	ENSBGRG00000021805	RYBP (ENSBGRG00000021759) #22	ENSBGRG00000021736	PROK2 (ENSBGRG00000021693) #23	GPR27 (ENSBGRG00000021670) #24	EIF4E3 (ENSBGRG00000021497) #25	ENSBGRG00000021458	FOXP1 (ENSBGRG00000019865) #26	MDFIC2 (ENSBGRG00000019713) #27	ENSBGRG00000019667	MITF (ENSBGRG00000018873) #28	FRMD4B (ENSBGRG00000017724) #29	ENSBGRG00000017643	LMOD3 (ENSBGRG00000017594)	ARL6IP5 (ENSBGRG00000017445) #16	ENSBGRG00000017411	UBA3 (ENSBGRG00000016525)
Bos_b	ANCESTRAL SPECIES	17	ENSGT00940000162732	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606.a.a #13	ENSGT00940000160080 #15	ENSGT01100000263481.n.a.a.a.b.a.b.a.b.a.a.b.b.b.b	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT01100000263480.a.a.b.b.b.a.a.b.a.a.b.b.b.b.a.a.b	ENSGT00940000162026.b #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00390000004856.w.a.a.b.b.a.a	ENSGT00940000156326 #28	ENSGT00940000153886.a.a.k.b.b	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT01100000263480.a.a.b.b.b.a.a.b.a.a.b.a.a.a	ENSGT00550000074831	ENSGT00390000010697
Cow	MODERN SPECIES	14	ENSBTAG00000034496	SETMAR (ENSBTAG00000018935)	LRRN1 (ENSBTAG00000001176)	CRBN (ENSBTAG00000019536) #8	TRNT1 (ENSBTAG00000019534) #9	IL5RA (ENSBTAG00000000273) #10	CNTN4 (ENSBTAG00000033225) #11	CNTN6 (ENSBTAG00000003592) #13	ENSBTAG00000006727	CHL1 (ENSBTAG00000002471) #15	CNTN3 (ENSBTAG00000007615) #17	PDZRN3 (ENSBTAG00000018644) #18	PPP4R2 (ENSBTAG00000002147) #19	GXYLT2 (ENSBTAG00000020481) #20	SHQ1 (ENSBTAG00000005436) #21	RYBP (ENSBTAG00000022689) #22	ENSBTAG00000054670	PROK2 (ENSBTAG00000019330) #23	GPR27 (ENSBTAG00000053030) #24	EIF4E3 (ENSBTAG00000018862) #25	FOXP1 (ENSBTAG00000016533) #26	MDFIC2 (ENSBTAG00000048900) #27	ENSBTAG00000009220	MITF (ENSBTAG00000006679) #28	FRMD4B (ENSBTAG00000007624) #29	ENSBTAG00000013059	LMOD3 (ENSBTAG00000021508)	ARL6IP5 (ENSBTAG00000021506) #16	UBA3 (ENSBTAG00000015556)	TMF1 (ENSBTAG00000015554)	EOGT (ENSBTAG00000022681)
Hybrid Bos Indicus	MODERN SPECIES	14	LRRN1 (ENSBIXG00005031456)	CRBN (ENSBIXG00005031447) #8	TRNT1 (ENSBIXG00005031446) #9	IL5RA (ENSBIXG00005031445) #10	CNTN4 (ENSBIXG00005031442) #11	CNTN6 (ENSBIXG00005031434) #13	ENSBIXG00005031428	CHL1 (ENSBIXG00005031410) #15	ENSBIXG00005031401	CNTN3 (ENSBIXG00005031394) #17	PDZRN3 (ENSBIXG00005031380) #18	PPP4R2 (ENSBIXG00005031369) #19	GXYLT2 (ENSBIXG00005031365) #20	ENSBIXG00005031363	SHQ1 (ENSBIXG00005031362) #21	RYBP (ENSBIXG00005031352) #22	ENSBIXG00005031346 #23	GPR27 (ENSBIXG00005031343) #24	EIF4E3 (ENSBIXG00005031340) #25	FOXP1 (ENSBIXG00005031327) #26	MDFIC2 (ENSBIXG00005031313) #27	ENSBIXG00005031312	MITF (ENSBIXG00005031308) #28	ENSBIXG00005031303	ENSBIXG00005031301	FRMD4B (ENSBIXG00005031293) #29	LMOD3 (ENSBIXG00005031283)	ARL6IP5 (ENSBIXG00005031280) #16	ENSBIXG00005031278	UBA3 (ENSBIXG00005031275)	TMF1 (ENSBIXG00005031267)
American bison	MODERN SPECIES	3333							IL5RA (ENSBBBG00000008533) #10	CNTN4 (ENSBBBG00000022563) #11	CNTN6 (ENSBBBG00000022607) #13	CHL1 (ENSBBBG00000022795) #15	CNTN3 (ENSBBBG00000022837) #17	PDZRN3 (ENSBBBG00000022898) #18	PPP4R2 (ENSBBBG00000008134) #19	GXYLT2 (ENSBBBG00000022931) #20	SHQ1 (ENSBBBG00000006026) #21	RYBP (ENSBBBG00000006031) #22	PROK2 (ENSBBBG00000022995) #23	EIF4E3 (ENSBBBG00000023020) #25	FOXP1 (ENSBBBG00000023930) #26	MDFIC2 (ENSBBBG00000006278) #27	MITF (ENSBBBG00000009019) #28	ENSBBBG00000006419	FRMD4B (ENSBBBG00000006453) #29	LMOD3 (ENSBBBG00000000194)	ENSBBBG00000000181 #16	UBA3 (ENSBBBG00000007824)	TMF1 (ENSBBBG00000008082)	EOGT (ENSBBBG00000025364)
Atlantogenata	ANCESTRAL SPECIES	34	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00940000165570	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00390000010170.a.a	ENSGT00940000158653	ENSGT00940000158502
Afrotheria	ANCESTRAL SPECIES	32	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00940000165570	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00390000010170.a.a	ENSGT00940000158653	ENSGT00940000158502	ENSGT00550000074950
Afrotheria_a	ANCESTRAL SPECIES	32	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00940000165570	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00390000010170.a.a	ENSGT00940000158653	ENSGT00940000158502	ENSGT00550000074950
Elephant	MODERN SPECIES	49	ENSLAFG00000026765	LRRN1 (ENSLAFG00000010287)	CRBN (ENSLAFG00000017627) #8	TRNT1 (ENSLAFG00000023191) #9	IL5RA (ENSLAFG00000011644) #10	CNTN4 (ENSLAFG00000011631) #11	CNTN6 (ENSLAFG00000008927) #13	CHL1 (ENSLAFG00000000179) #15	CNTN3 (ENSLAFG00000008082) #17	ENSLAFG00000031602	ENSLAFG00000026536	PDZRN3 (ENSLAFG00000014734) #18	PPP4R2 (ENSLAFG00000000513) #19	GXYLT2 (ENSLAFG00000017357) #20	ENSLAFG00000017601 #21	RYBP (ENSLAFG00000003133) #22	GPR27 (ENSLAFG00000015911) #24	EIF4E3 (ENSLAFG00000001998) #25	FOXP1 (ENSLAFG00000008006) #26	MITF (ENSLAFG00000023153) #28	FRMD4B (ENSLAFG00000001441) #29	LMOD3 (ENSLAFG00000032473)	ARL6IP5 (ENSLAFG00000004092) #16	UBA3 (ENSLAFG00000004088)	TMF1 (ENSLAFG00000004084)	EOGT (ENSLAFG00000004080)	TAFA4 (ENSLAFG00000004079)	SUCLG2 (ENSLAFG00000015283)	KBTBD8 (ENSLAFG00000002923)	ENSLAFG00000013671	SLC25A26 (ENSLAFG00000013666)
Hyrax	MODERN SPECIES	4626																RYBP (ENSPCAG00000014954) #22
Tenrec	MODERN SPECIES	5459																RYBP (ENSETEG00000015145) #22
Xenarthra	ANCESTRAL SPECIES	1203													ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22
Sloth	MODERN SPECIES	5002																RYBP (ENSCHOG00000011528) #22
Armadillo	MODERN SPECIES	1343													ENSDNOG00000038146 #19	GXYLT2 (ENSDNOG00000036560) #20	SHQ1 (ENSDNOG00000033937) #21	RYBP (ENSDNOG00000034094) #22
Marsupialia	ANCESTRAL SPECIES	14	ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000163880	ENSGT00390000010170.a.a
Marsupialia_b	ANCESTRAL SPECIES	14	ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000163880	ENSGT00390000010170.a.a
Diprotodontia	ANCESTRAL SPECIES	12	ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000163880	ENSGT00390000010170.a.a
Diprotodontia_a	ANCESTRAL SPECIES	10	ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000163880	ENSGT00390000010170.a.a
Common wonbat	MODERN SPECIES	1012	IL5RA (ENSVURG00010008982) #10	CNTN4 (ENSVURG00010008887) #11	ENSVURG00010008854	ENSVURG00010008843	CNTN6 (ENSVURG00010008756) #13	ENSVURG00010008727	CHL1 (ENSVURG00010008642) #15	CNTN3 (ENSVURG00010008586) #17	ENSVURG00010008548	PDZRN3 (ENSVURG00010008505) #18	ENSVURG00010008462	PPP4R2 (ENSVURG00010008448) #19	GXYLT2 (ENSVURG00010008424) #20	ENSVURG00010008413	SHQ1 (ENSVURG00010008402) #21	RYBP (ENSVURG00010008342) #22	PROK2 (ENSVURG00010008305) #23	ENSVURG00010008299	ENSVURG00010008289	EIF4E3 (ENSVURG00010008277) #25	FOXP1 (ENSVURG00010008144) #26	MDFIC2 (ENSVURG00010008101) #27	MITF (ENSVURG00010007937) #28	FRMD4B (ENSVURG00010007860) #29	LMOD3 (ENSVURG00010007809)	ARL6IP5 (ENSVURG00010007801) #16	UBA3 (ENSVURG00010007758)	TMF1 (ENSVURG00010007723)	EOGT (ENSVURG00010007661)	TAFA4 (ENSVURG00010007643)	TAFA1 (ENSVURG00010007612)
koala	MODERN SPECIES	122											CNTN3 (ENSPCIG00000019536) #17	PDZRN3 (ENSPCIG00000003575) #18	PPP4R2 (ENSPCIG00000003553) #19	GXYLT2 (ENSPCIG00000003536) #20	SHQ1 (ENSPCIG00000033419) #21	RYBP (ENSPCIG00000035828) #22	PROK2 (ENSPCIG00000035580) #23	ENSPCIG00000007180	GPR27 (ENSPCIG00000007179) #24	EIF4E3 (ENSPCIG00000011825) #25	FOXP1 (ENSPCIG00000011818) #26	MDFIC2 (ENSPCIG00000011815) #27	MITF (ENSPCIG00000011814) #28	FRMD4B (ENSPCIG00000011810) #29	LMOD3 (ENSPCIG00000011808)	ARL6IP5 (ENSPCIG00000011806) #16	UBA3 (ENSPCIG00000010311)	TMF1 (ENSPCIG00000010308)	EOGT (ENSPCIG00000010307)	TAFA4 (ENSPCIG00000009587)	ENSPCIG00000035890
Tasmanian devil	MODERN SPECIES		ENSSHAG00000012663	SUMF1 (ENSSHAG00000022459)	ENSSHAG00000030072	LRRN1 (ENSSHAG00000027597)	CRBN (ENSSHAG00000029768) #8	TRNT1 (ENSSHAG00000018861) #9	IL5RA (ENSSHAG00000018837) #10	CNTN4 (ENSSHAG00000018520) #11	CNTN6 (ENSSHAG00000015764) #13	ENSSHAG00000010125 #15	ENSSHAG00000010121 #17	PDZRN3 (ENSSHAG00000016709) #18	PPP4R2 (ENSSHAG00000015837) #19	GXYLT2 (ENSSHAG00000015594) #20	SHQ1 (ENSSHAG00000015077) #21	ENSSHAG00000013359 #22	ENSSHAG00000031144 #23	GPR27 (ENSSHAG00000022511) #24	EIF4E3 (ENSSHAG00000008775) #25	FOXP1 (ENSSHAG00000026979) #26	MDFIC2 (ENSSHAG00000030086) #27	MITF (ENSSHAG00000017522) #28	FRMD4B (ENSSHAG00000013729) #29	LMOD3 (ENSSHAG00000016539)	ARL6IP5 (ENSSHAG00000029654) #16	TMF1 (ENSSHAG00000016301)	UBA3 (ENSSHAG00000016367)	EOGT (ENSSHAG00000016174)	TAFA4 (ENSSHAG00000024690)	ENSSHAG00000025563	SUCLG2 (ENSSHAG00000029903)
Opossum	MODERN SPECIES	5	TRNT1 (ENSMODG00000004368) #9	ENSMODG00000004351 #10	CNTN4 (ENSMODG00000004323) #11	ENSMODG00000028686	ENSMODG00000048583	ENSMODG00000051590	CNTN6 (ENSMODG00000004198) #13	CHL1 (ENSMODG00000004153) #15	ENSMODG00000046603	ENSMODG00000049888	CNTN3 (ENSMODG00000003991) #17	PDZRN3 (ENSMODG00000003959) #18	PPP4R2 (ENSMODG00000003940) #19	GXYLT2 (ENSMODG00000003929) #20	SHQ1 (ENSMODG00000003926) #21	RYBP (ENSMODG00000038209) #22	PROK2 (ENSMODG00000043726) #23	GPR27 (ENSMODG00000003902) #24	EIF4E3 (ENSMODG00000003899) #25	FOXP1 (ENSMODG00000003884) #26	ENSMODG00000027781	MDFIC2 (ENSMODG00000028056) #27	ENSMODG00000028024	ENSMODG00000039201	MITF (ENSMODG00000003754) #28	FRMD4B (ENSMODG00000003688) #29	LMOD3 (ENSMODG00000003639)	ARL6IP5 (ENSMODG00000049779) #16	UBA3 (ENSMODG00000003622)	TMF1 (ENSMODG00000003468)	ENSMODG00000003450
Platypus	DUPLICATION
Platypus	MODERN SPECIES	35												THAP11Y (ENSOANG00000039397)	ENSOANG00000045879	ENSOANG00000039507	ENSOANG00000043592	RYBP (ENSOANG00000050562) #22	ENSOANG00000038226	ENSOANG00000043879	ENSOANG00000038599	ENSOANG00000045913	FEM1C (ENSOANG00000037326)	ENSOANG00000045434	CNBP (ENSOANG00000040160)	AKAP8LY (ENSOANG00000047029)	ENSOANG00000044776	ENSOANG00000037290	ENSOANG00000037198	ENSOANG00000038603	ENSOANG00000048071	ENSOANG00000046095	AMHY (ENSOANG00000049951)
Platypus	MODERN SPECIES	84	ENSOANG00000037378	RHO (ENSOANG00000003778)	PLXND1 (ENSOANG00000050054)	IFT122 (ENSOANG00000010892)	MBD4 (ENSOANG00000004589)	ENSOANG00000028240	RPL32 (ENSOANG00000037596)	ENSOANG00000040437	ENSOANG00000003781	SEC13 (ENSOANG00000009346)	ENSOANG00000048399	PDZRN3 (ENSOANG00000042812) #18	ENSOANG00000036060	GXYLT2 (ENSOANG00000036924) #20	SHQ1 (ENSOANG00000013705) #21	ENSOANG00000011702 #22	ENSOANG00000012192	TWF2 (ENSOANG00000009135)	PPM1M (ENSOANG00000004965)	ALDH1L1 (ENSOANG00000022069)	ENSOANG00000043021	KLF15 (ENSOANG00000014825)	ENSOANG00000040843	ENSOANG00000029239	ENSOANG00000051327	UROC1 (ENSOANG00000031100)	TMEM43 (ENSOANG00000002492)	ENSOANG00000012272	ENSOANG00000012273	SLC6A6 (ENSOANG00000002131)	GRIP2 (ENSOANG00000048579)
Sauria	ANCESTRAL SPECIES	13	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00530000063647.A.a.d	ENSGT00940000165570	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00650000094763	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000165309	ENSGT00390000011238	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493
Lepidosauria	ANCESTRAL SPECIES	14	ENSGT01030000237821	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00530000063647.A.a.d	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000165309	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000163880
Episquamata	ANCESTRAL SPECIES	4	ENSGT01030000237821	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00530000063647.A.a.d	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000165309	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000163880
Laterata	ANCESTRAL SPECIES	1	ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00530000063647.A.a.d	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000165309	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000163880
Argentine black and white tegu	MODERN SPECIES	30	CNTN4 (ENSSMRG00000017856) #11	ENSSMRG00000017841	CNTN6 (ENSSMRG00000013978) #13	CHL1 (ENSSMRG00000010197) #15	ENSSMRG00000010180	ENSSMRG00000010173	ENSSMRG00000010165	ENSSMRG00000010160	CNTN3 (ENSSMRG00000003298) #17	ENSSMRG00000003187	PDZRN3 (ENSSMRG00000003119) #18	ENSSMRG00000003079	GXYLT2 (ENSSMRG00000003071) #20	SHQ1 (ENSSMRG00000003041) #21	ENSSMRG00000002992	RYBP (ENSSMRG00000002983) #22	PROK2 (ENSSMRG00000002900) #23	GPR27 (ENSSMRG00000002896) #24	EIF4E3 (ENSSMRG00000002895) #25	ENSSMRG00000002882	FOXP1 (ENSSMRG00000002823) #26	MDFIC2 (ENSSMRG00000002664) #27	MITF (ENSSMRG00000002637) #28	FRMD4B (ENSSMRG00000002580) #29	LMOD3 (ENSSMRG00000002566)	ARL6IP5 (ENSSMRG00000002565) #16	UBA3 (ENSSMRG00000002519)	TMF1 (ENSSMRG00000002507)	EOGT (ENSSMRG00000001044)	TAFA4 (ENSSMRG00000001030)	ENSSMRG00000000996
Common wall lizard	MODERN SPECIES	10	LRRN1 (ENSPMRG00000014601)	CRBN (ENSPMRG00000014605) #8	TRNT1 (ENSPMRG00000014610) #9	ENSPMRG00000014615	CNTN4 (ENSPMRG00000014619) #11	CNTN6 (ENSPMRG00000014662) #13	ENSPMRG00000014808	CHL1 (ENSPMRG00000014819) #15	ENSPMRG00000014875	ENSPMRG00000014911	CNTN3 (ENSPMRG00000014964) #17	ENSPMRG00000015251	PDZRN3 (ENSPMRG00000015257) #18	ENSPMRG00000015274	SHQ1 (ENSPMRG00000015291) #21	RYBP (ENSPMRG00000015294) #22	PROK2 (ENSPMRG00000015300) #23	GPR27 (ENSPMRG00000015304) #24	EIF4E3 (ENSPMRG00000015314) #25	FOXP1 (ENSPMRG00000015325) #26	MDFIC2 (ENSPMRG00000015336) #27	ENSPMRG00000015341	MITF (ENSPMRG00000015352) #28	ENSPMRG00000015381	FRMD4B (ENSPMRG00000015388) #29	LMOD3 (ENSPMRG00000015415)	ARL6IP5 (ENSPMRG00000015419) #16	UBA3 (ENSPMRG00000015448)	TMF1 (ENSPMRG00000015455)	EOGT (ENSPMRG00000015468)	TAFA4 (ENSPMRG00000015501)
Toxicofera	ANCESTRAL SPECIES	3	ENSGT00940000155071.E	ENSGT01030000237821	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000163880	ENSGT00390000010170.a.a
Elapidae	ANCESTRAL SPECIES	2	ENSGT00940000155071.E.m.a	ENSGT01030000237821	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a.s #18	ENSGT00940000162859	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000163880	ENSGT00390000010170.a.a
Indian cobra	MODERN SPECIES	1	SUMF1 (ENSNNAG00000002532)	ENSNNAG00000002521	LRRN1 (ENSNNAG00000002516)	ENSNNAG00000002424 #8	TRNT1 (ENSNNAG00000002400) #9	CNTN4 (ENSNNAG00000002367) #11	CNTN6 (ENSNNAG00000002047) #13	CHL1 (ENSNNAG00000001897) #15	CNTN3 (ENSNNAG00000001838) #17	ENSNNAG00000001814	PDZRN3 (ENSNNAG00000001782) #18	ENSNNAG00000001768	GXYLT2 (ENSNNAG00000001742) #20	ENSNNAG00000001725 #21	ENSNNAG00000001713 #21	RYBP (ENSNNAG00000001699) #22	PROK2 (ENSNNAG00000001687) #23	GPR27 (ENSNNAG00000001680) #24	EIF4E3 (ENSNNAG00000001669) #25	FOXP1 (ENSNNAG00000000627) #26	MDFIC2 (ENSNNAG00000000344) #27	MITF (ENSNNAG00000000297) #28	ENSNNAG00000000263	FRMD4B (ENSNNAG00000006495) #29	LMOD3 (ENSNNAG00000006462)	ARL6IP5 (ENSNNAG00000006448) #16	UBA3 (ENSNNAG00000006386)	TMF1 (ENSNNAG00000005900)	EOGT (ENSNNAG00000005800)	TAFA4 (ENSNNAG00000005772)	ENSNNAG00000005763
Elapidae_a	ANCESTRAL SPECIES	8	ENSGT00940000155071.E.m.a	ENSGT01030000237821	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a.s #18	ENSGT00940000162859	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000163880	ENSGT00390000010170.a.a
Acanthophiinae	ANCESTRAL SPECIES	10	ENSGT00940000155071.E.m.a	ENSGT01030000237821	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a.s #18	ENSGT00940000162859	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000163880	ENSGT00390000010170.a.a
Eastern brown snake	MODERN SPECIES	3	ENSPTXG00000002883	ITPR1 (ENSPTXG00000000808)	SUMF1 (ENSPTXG00000000467)	ENSPTXG00000000457	LRRN1 (ENSPTXG00000000450)	CRBN (ENSPTXG00000000440) #8	TRNT1 (ENSPTXG00000000410) #9	CNTN4 (ENSPTXG00000000390) #11	ENSPTXG00000000362 #13	CHL1 (ENSPTXG00000000274) #15	CNTN3 (ENSPTXG00000000180) #17	PDZRN3 (ENSPTXG00000000135) #18	ENSPTXG00000000107	GXYLT2 (ENSPTXG00000000072) #20	SHQ1 (ENSPTXG00000000044) #21	RYBP (ENSPTXG00000004041) #22	PROK2 (ENSPTXG00000004037) #23	GPR27 (ENSPTXG00000004036) #24	EIF4E3 (ENSPTXG00000004035) #25	FOXP1 (ENSPTXG00000002890) #26	MDFIC2 (ENSPTXG00000002874) #27	MITF (ENSPTXG00000002872) #28	FRMD4B (ENSPTXG00000002871) #29	LMOD3 (ENSPTXG00000002870)	ARL6IP5 (ENSPTXG00000002869) #16	UBA3 (ENSPTXG00000002868)	TMF1 (ENSPTXG00000002867)	EOGT (ENSPTXG00000002866)	TAFA4 (ENSPTXG00000002865)	ENSPTXG00000002864	SUCLG2 (ENSPTXG00000002863)
Mainland tiger snake	MODERN SPECIES	2	ENSNSUG00000006524	LRRN1 (ENSNSUG00000006527)	CRBN (ENSNSUG00000006528) #8	TRNT1 (ENSNSUG00000006530) #9	CNTN4 (ENSNSUG00000006531) #11	CNTN6 (ENSNSUG00000006539) #13	CHL1 (ENSNSUG00000006603) #15	ENSNSUG00000006605	CNTN3 (ENSNSUG00000006618) #17	ENSNSUG00000006988	PDZRN3 (ENSNSUG00000006989) #18	ENSNSUG00000006992	GXYLT2 (ENSNSUG00000006994) #20	ENSNSUG00000006998 #21	ENSNSUG00000006999 #21	RYBP (ENSNSUG00000007004) #22	PROK2 (ENSNSUG00000007007) #23	GPR27 (ENSNSUG00000007008) #24	EIF4E3 (ENSNSUG00000007010) #25	FOXP1 (ENSNSUG00000007011) #26	MITF (ENSNSUG00000007126) #28	FRMD4B (ENSNSUG00000007211) #29	LMOD3 (ENSNSUG00000007212)	ARL6IP5 (ENSNSUG00000007213) #16	ENSNSUG00000007214	UBA3 (ENSNSUG00000007215)	TMF1 (ENSNSUG00000007216)	EOGT (ENSNSUG00000007219)	TAFA4 (ENSNSUG00000007226)	ENSNSUG00000007227	SUCLG2 (ENSNSUG00000007228)
Blue-lipped sea krait	MODERN SPECIES	10156																ENSLLTG00000014962 #22
Lizard	MODERN SPECIES	1	ENSACAG00000036977	CNTN6 (ENSACAG00000010425) #13	ENSACAG00000040802	ENSACAG00000041579	CHL1 (ENSACAG00000001405) #15	CNTN3 (ENSACAG00000014961) #17	ENSACAG00000043635	PDZRN3 (ENSACAG00000014911) #18	ENSACAG00000043132	PPP4R2 (ENSACAG00000014851) #19	GXYLT2 (ENSACAG00000014845) #20	SHQ1 (ENSACAG00000014809) #21	ENSACAG00000041376	ENSACAG00000040119	ENSACAG00000044810	RYBP (ENSACAG00000014789) #22	PROK2 (ENSACAG00000013932) #23	GPR27 (ENSACAG00000036221) #24	EIF4E3 (ENSACAG00000035562) #25	ENSACAG00000045210	ENSACAG00000028536	ENSACAG00000042966	ENSACAG00000038806	ENSACAG00000042406	FOXP1 (ENSACAG00000013683) #26	ENSACAG00000043836	MDFIC2 (ENSACAG00000013680) #27	ENSACAG00000039576	ENSACAG00000041007	ENSACAG00000028935	MITF (ENSACAG00000036061) #28
tuatara	MODERN SPECIES	276												PPP4R2 (ENSSPUG00000011494) #19	GXYLT2 (ENSSPUG00000011506) #20	ENSSPUG00000011522 #21	ENSSPUG00000011526 #21	RYBP (ENSSPUG00000011547) #22	PROK2 (ENSSPUG00000011555) #23	EIF4E3 (ENSSPUG00000011580) #25	FOXP1 (ENSSPUG00000011658) #26
Archelosauria	ANCESTRAL SPECIES	17	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00530000063647.A.a.d	ENSGT00940000165570	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00650000094763	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000165309	ENSGT00390000011238	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493
Cryptodira	ANCESTRAL SPECIES	17	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00530000063647.A.a.d	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00650000094763	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000165309	ENSGT00390000011238	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493
Testudinoidea	ANCESTRAL SPECIES	2	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00530000063647.A.a.d	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00650000094763	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000165309	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882
Testudinidae	ANCESTRAL SPECIES	5	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00530000063647.A.a.d	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00650000094763	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000165309	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882
Abingdon island giant tortoise	MODERN SPECIES	1926										CNTN3 (ENSCABG00000008269) #17	PDZRN3 (ENSCABG00000008275) #18	PPP4R2 (ENSCABG00000008278) #19	GXYLT2 (ENSCABG00000008279) #20	ENSCABG00000008280 #21	ENSCABG00000008281 #21	RYBP (ENSCABG00000008286) #22	PROK2 (ENSCABG00000008289) #23	GPR27 (ENSCABG00000008291) #24	EIF4E3 (ENSCABG00000008293) #25	ENSCABG00000008296
Goode s thornscrub tortoise	MODERN SPECIES	21	LRRN1 (ENSGEVG00005017431)	CRBN (ENSGEVG00005017441) #8	TRNT1 (ENSGEVG00005017461) #9	ENSGEVG00005017472	IL5RA (ENSGEVG00005017497) #10	CNTN4 (ENSGEVG00005017523) #11	ENSGEVG00005017608	CNTN6 (ENSGEVG00005017681) #13	CHL1 (ENSGEVG00005018075) #15	CNTN3 (ENSGEVG00005018336) #17	ENSGEVG00005018629	PDZRN3 (ENSGEVG00005018672) #18	PPP4R2 (ENSGEVG00005018720) #19	GXYLT2 (ENSGEVG00005018737) #20	SHQ1 (ENSGEVG00005018751) #21	RYBP (ENSGEVG00005018775) #22	PROK2 (ENSGEVG00005018790) #23	GPR27 (ENSGEVG00005018807) #24	EIF4E3 (ENSGEVG00005018821) #25	ENSGEVG00005018834	FOXP1 (ENSGEVG00005018847) #26	MDFIC2 (ENSGEVG00005018869) #27	ENSGEVG00005018889	MITF (ENSGEVG00005018917) #28	FRMD4B (ENSGEVG00005018987) #29	LMOD3 (ENSGEVG00005019002)	ARL6IP5 (ENSGEVG00005019026) #16	UBA3 (ENSGEVG00005004001)	TMF1 (ENSGEVG00005004020)	EOGT (ENSGEVG00005004061)	TAFA4 (ENSGEVG00005004105)
Emydidae	ANCESTRAL SPECIES	13	ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000165309	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000163880
Three-toed box turtle	MODERN SPECIES	33	ENSTMTG00000018826	SUMF1 (ENSTMTG00000018795)	LRRN1 (ENSTMTG00000018782)	CRBN (ENSTMTG00000018758) #8	TRNT1 (ENSTMTG00000018738) #9	IL5RA (ENSTMTG00000018639) #10	CNTN4 (ENSTMTG00000018539) #11	CNTN6 (ENSTMTG00000018470) #13	ENSTMTG00000018456	CHL1 (ENSTMTG00000018260) #15	CNTN3 (ENSTMTG00000018117) #17	PDZRN3 (ENSTMTG00000018055) #18	PPP4R2 (ENSTMTG00000018024) #19	GXYLT2 (ENSTMTG00000018007) #20	SHQ1 (ENSTMTG00000017994) #21	RYBP (ENSTMTG00000017980) #22	PROK2 (ENSTMTG00000017933) #23	GPR27 (ENSTMTG00000017910) #24	EIF4E3 (ENSTMTG00000017896) #25	FOXP1 (ENSTMTG00000017846) #26	MDFIC2 (ENSTMTG00000017833) #27	ENSTMTG00000017820	ENSTMTG00000017806	MITF (ENSTMTG00000017748) #28	FRMD4B (ENSTMTG00000017669) #29	LMOD3 (ENSTMTG00000017636)	ENSTMTG00000017624	ARL6IP5 (ENSTMTG00000017618) #16	UBA3 (ENSTMTG00000017592)	TMF1 (ENSTMTG00000017529)	EOGT (ENSTMTG00000017077)
painted turtle	MODERN SPECIES	2383												PDZRN3 (ENSCPBG00000006475) #18	PPP4R2 (ENSCPBG00000006460) #19	GXYLT2 (ENSCPBG00000006448) #20	SHQ1 (ENSCPBG00000006441) #21	RYBP (ENSCPBG00000006439) #22	PROK2 (ENSCPBG00000006431) #23	GPR27 (ENSCPBG00000006421) #24	EIF4E3 (ENSCPBG00000006415) #25	ENSCPBG00000005362	C3orf80 (ENSCPBG00000005344)	FOXP1 (ENSCPBG00000000850) #26	MDFIC2 (ENSCPBG00000000641) #27	ENSCPBG00000000607	ENSCPBG00000000573	MITF (ENSCPBG00000000513) #28	FRMD4B (ENSCPBG00000000426) #29	LMOD3 (ENSCPBG00000000394)	ARL6IP5 (ENSCPBG00000000384) #16	UBA3 (ENSCPBG00000000357)	TMF1 (ENSCPBG00000000268)
Chinese turtle	MODERN SPECIES	1091																RYBP (ENSPSIG00000011534) #22	PROK2 (ENSPSIG00000011546) #23
Archosauria	ANCESTRAL SPECIES	24	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00530000063647.A.a.d	ENSGT00940000165570	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000165309	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607
Aves	ANCESTRAL SPECIES	29	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00530000063647.A.a.d	ENSGT00940000165570	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000165309	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607
Neognathae	ANCESTRAL SPECIES	27	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00530000063647.A.a.d	ENSGT00940000165570	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000165309	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607
Neognathae_b	ANCESTRAL SPECIES	18	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00530000063647.A.a.d	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000165309	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607
Passeriformes	ANCESTRAL SPECIES	16	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00530000063647.A.a.d	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000165309	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607
Passeriformes_d	ANCESTRAL SPECIES	16	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00530000063647.A.a.d	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000165309	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607
Passeriformes_g	ANCESTRAL SPECIES	16	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C.k #11	ENSGT00940000155198.C.l #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000165309	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607
Passeroidea	ANCESTRAL SPECIES	16	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C.k #11	ENSGT00940000155198.C.l #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000165309	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607
Zebra finch	MODERN SPECIES	3	BHLHE40 (ENSTGUG00000010301)	ITPR1 (ENSTGUG00000010241)	SUMF1 (ENSTGUG00000010221)	ENSTGUG00000019447	LRRN1 (ENSTGUG00000010215)	CRBN (ENSTGUG00000010200) #8	TRNT1 (ENSTGUG00000010192) #9	IL5RA (ENSTGUG00000010171) #10	CNTN4 (ENSTGUG00000010102) #11	CNTN6 (ENSTGUG00000010053) #13	CHL1 (ENSTGUG00000009997) #15	CNTN3 (ENSTGUG00000009960) #17	PDZRN3 (ENSTGUG00000014523) #18	ENSTGUG00000009943	SHQ1 (ENSTGUG00000009933) #21	RYBP (ENSTGUG00000020831) #22	PROK2 (ENSTGUG00000026872) #23	GPR27 (ENSTGUG00000009928) #24	EIF4E3 (ENSTGUG00000009923) #25	FOXP1 (ENSTGUG00000009872) #26	MDFIC2 (ENSTGUG00000022276) #27	ENSTGUG00000009864	MITF (ENSTGUG00000009847) #28	FRMD4B (ENSTGUG00000009791) #29	LMOD3 (ENSTGUG00000009788)	ARL6IP5 (ENSTGUG00000009784) #16	UBA3 (ENSTGUG00000009733)	TMF1 (ENSTGUG00000009717)	EOGT (ENSTGUG00000009683)	TAFA4 (ENSTGUG00000024581)	TAFA1 (ENSTGUG00000009669)
Common canary	MODERN SPECIES	15										CHL1 (ENSSCAG00000008249) #15	CNTN3 (ENSSCAG00000008226) #17	PDZRN3 (ENSSCAG00000008162) #18	PPP4R2 (ENSSCAG00000008132) #19	GXYLT2 (ENSSCAG00000008125) #20	SHQ1 (ENSSCAG00000008114) #21	RYBP (ENSSCAG00000008108) #22	PROK2 (ENSSCAG00000008100) #23	GPR27 (ENSSCAG00000008093) #24	EIF4E3 (ENSSCAG00000008083) #25	FOXP1 (ENSSCAG00000008063) #26	MDFIC2 (ENSSCAG00000008028) #27	ENSSCAG00000008022	ENSSCAG00000008018	MITF (ENSSCAG00000008001) #28	FRMD4B (ENSSCAG00000007970) #29	LMOD3 (ENSSCAG00000007965)	ARL6IP5 (ENSSCAG00000007962) #16	UBA3 (ENSSCAG00000007959)	TMF1 (ENSSCAG00000007954)	EOGT (ENSSCAG00000007882)	TAFA4 (ENSSCAG00000007848)
Medium ground finch	MODERN SPECIES	20										CHL1 (ENSGFOG00000004348) #15	CNTN3 (ENSGFOG00000004387) #17	PDZRN3 (ENSGFOG00000004417) #18	PPP4R2 (ENSGFOG00000004433) #19	GXYLT2 (ENSGFOG00000004458) #20	SHQ1 (ENSGFOG00000004475) #21	RYBP (ENSGFOG00000004492) #22	ENSGFOG00000004504	PROK2 (ENSGFOG00000004519) #23	GPR27 (ENSGFOG00000004530) #24	EIF4E3 (ENSGFOG00000004543) #25	FOXP1 (ENSGFOG00000004570) #26	MDFIC2 (ENSGFOG00000004631) #27	ENSGFOG00000004645	ENSGFOG00000004688	MITF (ENSGFOG00000004714) #28	FRMD4B (ENSGFOG00000004734) #29	LMOD3 (ENSGFOG00000004784)	ARL6IP5 (ENSGFOG00000004791) #16	UBA3 (ENSGFOG00000004801)	TMF1 (ENSGFOG00000004844)	EOGT (ENSGFOG00000005298)
Flycatcher	MODERN SPECIES	3	ENSFALG00000023036	LRRN1 (ENSFALG00000014525)	CRBN (ENSFALG00000013540) #8	TRNT1 (ENSFALG00000013539) #9	IL5RA (ENSFALG00000013534) #10	ENSFALG00000025220	CNTN4 (ENSFALG00000013504) #11	CNTN6 (ENSFALG00000013472) #13	CHL1 (ENSFALG00000013463) #15	CNTN3 (ENSFALG00000013457) #17	ENSFALG00000027072	PDZRN3 (ENSFALG00000013445) #18	PPP4R2 (ENSFALG00000013436) #19	GXYLT2 (ENSFALG00000024120) #20	SHQ1 (ENSFALG00000013428) #21	RYBP (ENSFALG00000027888) #22	PROK2 (ENSFALG00000013423) #23	GPR27 (ENSFALG00000014506) #24	EIF4E3 (ENSFALG00000028480) #25	FOXP1 (ENSFALG00000013404) #26	MDFIC2 (ENSFALG00000013397) #27	ENSFALG00000013396	MITF (ENSFALG00000026731) #28	FRMD4B (ENSFALG00000013372) #29	LMOD3 (ENSFALG00000013370)	ARL6IP5 (ENSFALG00000028538) #16	UBA3 (ENSFALG00000013365)	TMF1 (ENSFALG00000013361)	EOGT (ENSFALG00000026269)	TAFA4 (ENSFALG00000013356)	TAFA1 (ENSFALG00000013355)
Great tit	MODERN SPECIES	3	ITPR1 (ENSPMJG00000005801)	SUMF1 (ENSPMJG00000005794)	ENSPMJG00000005792	CRBN (ENSPMJG00000005773) #8	TRNT1 (ENSPMJG00000005765) #9	IL5RA (ENSPMJG00000005764) #10	CNTN4 (ENSPMJG00000005757) #11	CNTN6 (ENSPMJG00000005736) #13	CHL1 (ENSPMJG00000005688) #15	CNTN3 (ENSPMJG00000005671) #17	ENSPMJG00000005665	PDZRN3 (ENSPMJG00000005657) #18	ENSPMJG00000005654	GXYLT2 (ENSPMJG00000005617) #20	SHQ1 (ENSPMJG00000005611) #21	RYBP (ENSPMJG00000005603) #22	PROK2 (ENSPMJG00000005599) #23	GPR27 (ENSPMJG00000005597) #24	EIF4E3 (ENSPMJG00000005596) #25	FOXP1 (ENSPMJG00000005573) #26	MDFIC2 (ENSPMJG00000005566) #27	ENSPMJG00000005560	MITF (ENSPMJG00000005557) #28	FRMD4B (ENSPMJG00000005549) #29	LMOD3 (ENSPMJG00000005547)	ARL6IP5 (ENSPMJG00000005544) #16	UBA3 (ENSPMJG00000005263)	TMF1 (ENSPMJG00000005253)	EOGT (ENSPMJG00000005244)	TAFA4 (ENSPMJG00000005234)	TAFA1 (ENSPMJG00000005221)
Neognathae_c	ANCESTRAL SPECIES	21	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00530000063647.A.a.d	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607	ENSGT00390000010170.a.a
Kakapo	MODERN SPECIES	3	SUMF1 (ENSSHBG00005021231)	ENSSHBG00005021232	LRRN1 (ENSSHBG00005021234)	CRBN (ENSSHBG00005021235) #8	TRNT1 (ENSSHBG00005021236) #9	IL5RA (ENSSHBG00005021237) #10	CNTN4 (ENSSHBG00005021238) #11	CNTN6 (ENSSHBG00005021239) #13	CHL1 (ENSSHBG00005021241) #15	CNTN3 (ENSSHBG00005000965) #17	ENSSHBG00005010579	PDZRN3 (ENSSHBG00005010639) #18	ENSSHBG00005010670	GXYLT2 (ENSSHBG00005010727) #20	SHQ1 (ENSSHBG00005010752) #21	RYBP (ENSSHBG00005010792) #22	PROK2 (ENSSHBG00005010813) #23	GPR27 (ENSSHBG00005010828) #24	EIF4E3 (ENSSHBG00005010834) #25	FOXP1 (ENSSHBG00005010885) #26	MDFIC2 (ENSSHBG00005010924) #27	ENSSHBG00005010965	ENSSHBG00005010991	ENSSHBG00005011012	FRMD4B (ENSSHBG00005011065) #29	LMOD3 (ENSSHBG00005011123)	ARL6IP5 (ENSSHBG00005011174) #16	UBA3 (ENSSHBG00005011214)	TMF1 (ENSSHBG00005011258)	EOGT (ENSSHBG00005011329)	TAFA4 (ENSSHBG00005011455)
Golden eagle	MODERN SPECIES	12	ENSACCG00020009779	LRRN1 (ENSACCG00020009768)	ENSACCG00020009755	CRBN (ENSACCG00020009742) #8	TRNT1 (ENSACCG00020009728) #9	IL5RA (ENSACCG00020009685) #10	ENSACCG00020009645	CNTN4 (ENSACCG00020009634) #11	CNTN6 (ENSACCG00020009592) #13	CHL1 (ENSACCG00020009287) #15	CNTN3 (ENSACCG00020008678) #17	PDZRN3 (ENSACCG00020008644) #18	PPP4R2 (ENSACCG00020008614) #19	GXYLT2 (ENSACCG00020008596) #20	SHQ1 (ENSACCG00020008571) #21	RYBP (ENSACCG00020008553) #22	PROK2 (ENSACCG00020008544) #23	GPR27 (ENSACCG00020008536) #24	EIF4E3 (ENSACCG00020008519) #25	FOXP1 (ENSACCG00020008422) #26	MDFIC2 (ENSACCG00020008280) #27	MITF (ENSACCG00020008257) #28	FRMD4B (ENSACCG00020008222) #29	LMOD3 (ENSACCG00020008206)	ARL6IP5 (ENSACCG00020008195) #16	UBA3 (ENSACCG00020008140)	TMF1 (ENSACCG00020008119)	EOGT (ENSACCG00020008102)	TAFA4 (ENSACCG00020008089)	TAFA1 (ENSACCG00020008077)	SUCLG2 (ENSACCG00020008064)
Galloanserae	ANCESTRAL SPECIES	26	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00530000063647.A.a.d	ENSGT00940000165570	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000165309	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000163880
Anatidae	ANCESTRAL SPECIES	41	ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000165309	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000163880
Pink-footed goose	MODERN SPECIES	49	ITPR1 (ENSABRG00000010195)	SUMF1 (ENSABRG00000014365)	ENSABRG00000014367	LRRN1 (ENSABRG00000014369)	CRBN (ENSABRG00000014371) #8	TRNT1 (ENSABRG00000014416) #9	IL5RA (ENSABRG00000014471) #10	CNTN4 (ENSABRG00000014569) #11	CNTN6 (ENSABRG00000015653) #13	CHL1 (ENSABRG00000016703) #15	CNTN3 (ENSABRG00000016737) #17	PDZRN3 (ENSABRG00000016746) #18	PPP4R2 (ENSABRG00000016753) #19	GXYLT2 (ENSABRG00000016756) #20	SHQ1 (ENSABRG00000016761) #21	RYBP (ENSABRG00000016768) #22	PROK2 (ENSABRG00000016781) #23	GPR27 (ENSABRG00000016783) #24	EIF4E3 (ENSABRG00000016790) #25	FOXP1 (ENSABRG00000016798) #26	MDFIC2 (ENSABRG00000016818) #27	ENSABRG00000016826	MITF (ENSABRG00000016841) #28	FRMD4B (ENSABRG00000016861) #29	LMOD3 (ENSABRG00000016894)	ARL6IP5 (ENSABRG00000016899) #16	UBA3 (ENSABRG00000016957)	TMF1 (ENSABRG00000017367)	EOGT (ENSABRG00000017437)	TAFA4 (ENSABRG00000017510)	ENSABRG00000017534
Duck	MODERN SPECIES	4	ITPR1 (ENSAPLG00000016350)	SUMF1 (ENSAPLG00000003538)	ENSAPLG00000001691	LRRN1 (ENSAPLG00000001694)	CRBN (ENSAPLG00000003897) #8	TRNT1 (ENSAPLG00000004258) #9	IL5RA (ENSAPLG00000004282) #10	CNTN4 (ENSAPLG00000004320) #11	CNTN6 (ENSAPLG00000005639) #13	CHL1 (ENSAPLG00000007000) #15	CNTN3 (ENSAPLG00000009693) #17	PDZRN3 (ENSAPLG00000014073) #18	PPP4R2 (ENSAPLG00000014045) #19	GXYLT2 (ENSAPLG00000013945) #20	SHQ1 (ENSAPLG00000013926) #21	RYBP (ENSAPLG00000013882) #22	PROK2 (ENSAPLG00000011432) #23	GPR27 (ENSAPLG00000011697) #24	EIF4E3 (ENSAPLG00000023114) #25	FOXP1 (ENSAPLG00000011828) #26	MDFIC2 (ENSAPLG00000023736) #27	ENSAPLG00000011893	MITF (ENSAPLG00000011965) #28	FRMD4B (ENSAPLG00000012468) #29	LMOD3 (ENSAPLG00000013202)	ARL6IP5 (ENSAPLG00000017744) #16	UBA3 (ENSAPLG00000013254)	TMF1 (ENSAPLG00000013459)	EOGT (ENSAPLG00000013712)	TAFA4 (ENSAPLG00000014143)	ENSAPLG00000014295
Phasianidae	ANCESTRAL SPECIES	16	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00530000063647.A.a.d	ENSGT00940000165570	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000165309	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000163880
Phasianidae_b	ANCESTRAL SPECIES	16	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00390000016404 #8	ENSGT00390000009678 #9	ENSGT00940000160890 #10	ENSGT00940000155198.C #11	ENSGT00940000160606 #13	ENSGT00940000160080 #15	ENSGT00940000160282 #17	ENSGT00530000063647.A.a.d	ENSGT00940000165570	ENSGT00950000183062.a.a.a #18	ENSGT00940000160975 #19	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000162026 #23	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000165309	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607
Chicken	MODERN SPECIES	3	SUMF1 (ENSGALG00010020596)	ENSGALG00010020580	LRRN1 (ENSGALG00010020562)	CRBN (ENSGALG00010020509) #8	TRNT1 (ENSGALG00010020484) #9	IL5RA (ENSGALG00010020457) #10	CNTN4 (ENSGALG00010020436) #11	CNTN6 (ENSGALG00010020425) #13	CHL1 (ENSGALG00010020396) #15	CNTN3 (ENSGALG00010020369) #17	ENSGALG00010020359	PDZRN3 (ENSGALG00010020350) #18	PPP4R2 (ENSGALG00010020329) #19	GXYLT2 (ENSGALG00010020309) #20	SHQ1 (ENSGALG00010020307) #21	RYBP (ENSGALG00010018991) #22	PROK2 (ENSGALG00010019225) #23	GPR173 (ENSGALG00010022232) #24	EIF4E3 (ENSGALG00010022219) #25	FOXP1 (ENSGALG00010022171) #26	MDFIC2 (ENSGALG00010022083) #27	ENSGALG00010022077	MITF (ENSGALG00010022062) #28	FRMD4B (ENSGALG00010020127) #29	LMOD3 (ENSGALG00010020088)	ARL6IP5 (ENSGALG00010020070) #16	UBA3 (ENSGALG00010020061)	TMF1 (ENSGALG00010020036)	EOGT (ENSGALG00010020005)	TAFA4 (ENSGALG00010019938)	TAFA1 (ENSGALG00010019871)
Turkey	MODERN SPECIES	5	LRRN1 (ENSMGAG00000009988)	TRNT1 (ENSMGAG00000009971) #9	CRBN (ENSMGAG00000010013) #8	IL5RA (ENSMGAG00000009996) #10	CNTN4 (ENSMGAG00000009910) #11	CNTN6 (ENSMGAG00000009812) #13	CHL1 (ENSMGAG00000009762) #15	ENSMGAG00000009709 #17	ENSMGAG00000021720	ENSMGAG00000017393	PDZRN3 (ENSMGAG00000009691) #18	ENSMGAG00000018290	GXYLT2 (ENSMGAG00000009655) #20	PPP4R2 (ENSMGAG00000009674) #19	SHQ1 (ENSMGAG00000009640) #21	RYBP (ENSMGAG00000009639) #22	PROK2 (ENSMGAG00000002367) #23	GPR27 (ENSMGAG00000009633) #24	EIF4E3 (ENSMGAG00000009619) #25	FOXP1 (ENSMGAG00000009549) #26	MDFIC2 (ENSMGAG00000009545) #27	ENSMGAG00000009539	MITF (ENSMGAG00000009507) #28	FRMD4B (ENSMGAG00000009466) #29	LMOD3 (ENSMGAG00000009459)	ARL6IP5 (ENSMGAG00000009453) #16	UBA3 (ENSMGAG00000009393)	TMF1 (ENSMGAG00000009372)	EOGT (ENSMGAG00000009335)	TAFA4 (ENSMGAG00000009332)	ENSMGAG00000009329
Japanese quail	MODERN SPECIES	3	ENSCJPG00005018684	LRRN1 (ENSCJPG00005018683)	CRBN (ENSCJPG00005018682) #8	TRNT1 (ENSCJPG00005018681) #9	IL5RA (ENSCJPG00005018680) #10	CNTN4 (ENSCJPG00005018679) #11	CNTN6 (ENSCJPG00005018676) #13	ENSCJPG00005018675	ENSCJPG00005018674	CHL1 (ENSCJPG00005018669) #15	CNTN3 (ENSCJPG00005018668) #17	PDZRN3 (ENSCJPG00005018664) #18	ENSCJPG00005018662	GXYLT2 (ENSCJPG00005018661) #20	SHQ1 (ENSCJPG00005018660) #21	RYBP (ENSCJPG00005018659) #22	PROK2 (ENSCJPG00005018655) #23	GPR27 (ENSCJPG00005018654) #24	ENSCJPG00005018653	EIF4E3 (ENSCJPG00005018652) #25	FOXP1 (ENSCJPG00005018169) #26	MDFIC2 (ENSCJPG00005018163) #27	ENSCJPG00005018162	ENSCJPG00005018160	MITF (ENSCJPG00005018152) #28	FRMD4B (ENSCJPG00005018142) #29	LMOD3 (ENSCJPG00005018140)	ARL6IP5 (ENSCJPG00005018138) #16	UBA3 (ENSCJPG00005018109)	TMF1 (ENSCJPG00005018103)	EOGT (ENSCJPG00005018101)
African ostrich	MODERN SPECIES	1076	ENSSCUG00000015304	LRRN1 (ENSSCUG00000015306)	CRBN (ENSSCUG00000015318) #8	TRNT1 (ENSSCUG00000015323) #9	IL5RA (ENSSCUG00000015330) #10	CNTN4 (ENSSCUG00000015339) #11	ENSSCUG00000015349	CNTN6 (ENSSCUG00000015354) #13	CHL1 (ENSSCUG00000015369) #15	CNTN3 (ENSSCUG00000015390) #17	ENSSCUG00000015400	PDZRN3 (ENSSCUG00000015402) #18	PPP4R2 (ENSSCUG00000015403) #19	GXYLT2 (ENSSCUG00000015407) #20	SHQ1 (ENSSCUG00000015411) #21	RYBP (ENSSCUG00000015421) #22	PROK2 (ENSSCUG00000015422) #23	GPR27 (ENSSCUG00000015423) #24	EIF4E3 (ENSSCUG00000015426) #25
Australian saltwater crocodile	MODERN SPECIES	37	LRRN1 (ENSCPRG00005015420)	CRBN (ENSCPRG00005015422) #8	TRNT1 (ENSCPRG00005015429) #9	IL5RA (ENSCPRG00005015437) #10	CNTN4 (ENSCPRG00005015455) #11	ENSCPRG00005015468	ENSCPRG00005015470	CNTN6 (ENSCPRG00005015511) #13	CHL1 (ENSCPRG00005015694) #15	ENSCPRG00005015700	CNTN3 (ENSCPRG00005015706) #17	PDZRN3 (ENSCPRG00005015721) #18	PPP4R2 (ENSCPRG00005015732) #19	GXYLT2 (ENSCPRG00005015736) #20	ENSCPRG00005015737 #21	RYBP (ENSCPRG00005015740) #22	PROK2 (ENSCPRG00005015745) #23	GPR27 (ENSCPRG00005015748) #24	EIF4E3 (ENSCPRG00005015751) #25	FOXP1 (ENSCPRG00005015769) #26	MDFIC2 (ENSCPRG00005015832) #27	MITF (ENSCPRG00005015838) #28	FRMD4B (ENSCPRG00005015846) #29	LMOD3 (ENSCPRG00005015864)	ARL6IP5 (ENSCPRG00005015865) #16	UBA3 (ENSCPRG00005015868)	TMF1 (ENSCPRG00005015874)	EOGT (ENSCPRG00005015876)	TAFA4 (ENSCPRG00005015878)	ENSCPRG00005015882	ENSCPRG00005015885
Anura	ANCESTRAL SPECIES	52												ENSGT00950000183062.a.a.a #18	ENSGT00940000162859	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000159892 #26	ENSGT00730000111641 #27	ENSGT00940000165309	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607
Leishan spiny toad	MODERN SPECIES	11	ENSLLEG00000030114	TAFA4 (ENSLLEG00000030074)	EOGT (ENSLLEG00000030010)	ENSLLEG00000029988	TMF1 (ENSLLEG00000029962)	UBA3 (ENSLLEG00000029864)	ENSLLEG00000029831	ENSLLEG00000029807	ENSLLEG00000029794	ENSLLEG00000029787	PDZRN3 (ENSLLEG00000029758) #18	ENSLLEG00000029725	GXYLT2 (ENSLLEG00000029705) #20	SHQ1 (ENSLLEG00000029669) #21	ENSLLEG00000029657	RYBP (ENSLLEG00000029604) #22	ENSLLEG00000029590	EIF4E3 (ENSLLEG00000029555) #25	ENSLLEG00000029545	FOXP1 (ENSLLEG00000029038) #26	MDFIC2 (ENSLLEG00000028932) #27	SLC25A6 (ENSLLEG00000028913)	ENSLLEG00000028726	ENSLLEG00000028682	ENSLLEG00000028673	IVNS1ABP (ENSLLEG00000028612)	GLRX2 (ENSLLEG00000028565)	CDC73 (ENSLLEG00000028448)	ENSLLEG00000028405	MITF (ENSLLEG00000028151) #28	ENSLLEG00000028107
Frog	MODERN SPECIES	4	setd5 (ENSXETG00000017841)	ENSXETG00000035213	XB5772073 [provisional:srpk1] (ENSXETG00000024935)	ENSXETG00000041322	plxnb1 (ENSXETG00000017823)	XB956263 [provisional:mapk12] (ENSXETG00000000409)	ccdc51 (ENSXETG00000047356)	ccdc51 (ENSXETG00000044242)	ENSXETG00000000408	ENSXETG00000038876	pdzrn3 (ENSXETG00000000401) #18	ppp4r2 (ENSXETG00000015932)	gxylt2 (ENSXETG00000015929) #20	shq1 (ENSXETG00000032215) #21	ENSXETG00000039956	rybp (ENSXETG00000015914) #22	prok2 (ENSXETG00000035599)	gpr27 (ENSXETG00000031117) #24	eif4e3 (ENSXETG00000046627) #25	foxp1 (ENSXETG00000008510) #26	ENSXETG00000043474	ENSXETG00000044720	MDFIC2 (ENSXETG00000044995) #27	mgc147226 (ENSXETG00000000147)	mitf (ENSXETG00000039276) #28	frmd4b (ENSXETG00000016169) #29	lmod3 (ENSXETG00000043756)	arl6ip5 (ENSXETG00000036732) #16	ENSXETG00000040721	ENSXETG00000040947	uba3 (ENSXETG00000016167)
Coelacanth	MODERN SPECIES	712										CNTN3 (ENSLACG00000003784) #17	ENSLACG00000010516	PDZRN3 (ENSLACG00000012887) #18	ppp4r2b (ENSLACG00000013646)	GXYLT2 (ENSLACG00000014093) #20	SHQ1 (ENSLACG00000014243) #21	RYBP (ENSLACG00000015328) #22
Actinopterygii	ANCESTRAL SPECIES	14													ENSGT00940000173141	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859	ENSGT00390000013995.b.a #22	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607	ENSGT00390000010170.a.a	ENSGT00940000164303	ENSGT00940000158653
Neopterygii	ANCESTRAL SPECIES	59	ENSGT00940000155071.E	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d	ENSGT00940000157154.c	ENSGT00940000165984	ENSGT00940000166994	ENSGT00390000016404 #8	ENSGT01050000244882.b.c.a	ENSGT00390000009678 #9	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865 #25	ENSGT00940000165920.b	ENSGT00940000165309	ENSGT00390000011238	ENSGT00730000111641 #27	ENSGT00940000156326 #28	ENSGT01020000230354.A.a #29	ENSGT00940000159731	ENSGT00390000008631.a #16	ENSGT00550000074831	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882
Osteoglossocephalai	ANCESTRAL SPECIES	85	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00940000165667	ENSGT00940000169850	ENSGT00940000160361	ENSGT01100000263545.a.b.c.a	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000155198.B ##11	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b	ENSGT00940000165309	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00550000074831.k	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000159882	ENSGT00940000162607.b	ENSGT00390000010170.a.a	ENSGT00940000164303.b.a
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	28	ENSGT00940000157562.q.b	ENSGT00390000018558	ENSGT00940000165527	ENSGT00530000063759.b	ENSGT00940000155448.c.b	ENSGT00940000159708	ENSGT00940000153776.a.b	ENSGT00940000156091.a	ENSGT00940000160361	ENSGT01100000263545.a.b.c.a	ENSGT00940000158442	ENSGT00940000164786.b	ENSGT00940000165371.b	ENSGT00940000155198.A.b ##11	ENSGT00940000162859.p	ENSGT00390000013995.b.a.a #22	ENSGT00940000155865.c.a #25	ENSGT00940000165920.a	ENSGT00940000156326.b #28	ENSGT00940000159731	ENSGT00390000008631.a.o.b #16	ENSGT00550000074831.l	ENSGT00940000155644.b	ENSGT00940000162607.a	ENSGT00940000164303.b.b	ENSGT00940000155820.b	ENSGT00940000153629.a.a.a	ENSGT00390000016228.b	ENSGT00510000046608.B.t	ENSGT00940000157279.j	ENSGT01030000234637.b.d.a.a.b
P. kingsleyae	MODERN SPECIES	90	bgna (ENSPKIG00000024209)	B4GALT3 (ENSPKIG00000024219)	si:ch211-229n2.6 (ENSPKIG00000024225)	dedd (ENSPKIG00000024245)	atp2b3a (ENSPKIG00000024312)	ENSPKIG00000024388	ENSPKIG00000024408	ENSPKIG00000024420	ENSPKIG00000024429	rpl10 (ENSPKIG00000024440)	atp6ap1a (ENSPKIG00000024454)	gdi1 (ENSPKIG00000024468)	ENSPKIG00000024481	ENSPKIG00000024491	ppp4r2a (ENSPKIG00000024507)	RYBP (ENSPKIG00000024534) #22	eif4e3 (ENSPKIG00000024547) #25	foxp1a (ENSPKIG00000024561)	ENSPKIG00000024569	MITF (ENSPKIG00000024589) #28	LMOD3 (ENSPKIG00000024622)	arl6ip5b (ENSPKIG00000024630) #16	UBA3 (ENSPKIG00000024656)	TAFA1 (ENSPKIG00000024695)	slc16a7 (ENSPKIG00000024707)	MAGI1 (ENSPKIG00000024736)	ENSPKIG00000024778	PRICKLE2 (ENSPKIG00000024795)	ENSPKIG00000024813	PSMD6 (ENSPKIG00000024819)	ATXN7 (ENSPKIG00000024831)
Osteoglossiformes	ANCESTRAL SPECIES	54								ENSGT00940000164786.a	ENSGT00940000155198.B ##11	ENSGT00940000165371.a	ENSGT00940000155198.A.a ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a.b #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865.d #25	ENSGT00940000165920.b	ENSGT00730000111641 #27	ENSGT00940000165309	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00550000074831.k	ENSGT00390000010697	ENSGT00940000156493	ENSGT00940000165407	ENSGT00940000159508.a	ENSGT00940000159882
P. kingsleyae	MODERN SPECIES	49						ENSPKIG00000020583	ENSPKIG00000020683	EPB41L1 (ENSPKIG00000020949)	cntn4 (ENSPKIG00000021216)	ENSPKIG00000021268 ##11	ENSPKIG00000021316	ENSPKIG00000021421 ##11	pdzrn3b (ENSPKIG00000021461) #18	gxylt2 (ENSPKIG00000021503) #20	shq1 (ENSPKIG00000021517) #21	rybpb (ENSPKIG00000021549) #22	prok2 (ENSPKIG00000021574)	gpr27 (ENSPKIG00000021581) #24	EIF4E3 (ENSPKIG00000021599) #25	foxp1b (ENSPKIG00000021659)	MDFIC2 (ENSPKIG00000021752) #27	mitfa (ENSPKIG00000021897) #28	FRMD4B (ENSPKIG00000022214) #29	uba3 (ENSPKIG00000022293)	tmf1 (ENSPKIG00000022370)	EOGT (ENSPKIG00000022411)	TAFA4 (ENSPKIG00000022452)	TAFA1 (ENSPKIG00000022479)	suclg2 (ENSPKIG00000022512)	ENSPKIG00000022546	ENSPKIG00000022563
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	11	ENSSFOG00015019494	ENSSFOG00015019623	tekt4 (ENSSFOG00015019634)	ENSSFOG00015033018	snx21 (ENSSFOG00015025990)	srsf6a (ENSSFOG00015019681)	L3MBTL1 (ENSSFOG00015019701)	sgk2a (ENSSFOG00015019734)	ENSSFOG00015019760	ENSSFOG00015019810	ENSSFOG00015019933	ENSSFOG00015019983	CNTN4 (ENSSFOG00015020161) ##11	PDZRN3 (ENSSFOG00015024646) #18	ppp4r2a (ENSSFOG00015020511)	rybpb (ENSSFOG00015025246) #22	eif4e3 (ENSSFOG00015029780) #25	ENSSFOG00015020554	MITF (ENSSFOG00015026327) #28	ENSSFOG00015028695	LMOD3 (ENSSFOG00015020628)	arl6ip5b (ENSSFOG00015026174) #16	UBA3 (ENSSFOG00015020666)	tafa4b (ENSSFOG00015020753)	TAFA1 (ENSSFOG00015020770)	slc16a7 (ENSSFOG00015020802)	kbtbd8 (ENSSFOG00015026870)	ENSSFOG00015028939	MAGI1 (ENSSFOG00015020854)	prickle2a (ENSSFOG00015029054)	ENSSFOG00015025196
Asian bonytongue	MODERN SPECIES	14	mybl2b (ENSSFOG00015015284)	rpn2 (ENSSFOG00015015349)	ENSSFOG00015015437	CDK5RAP1 (ENSSFOG00015015455)	ENSSFOG00015015502	EPB41L1 (ENSSFOG00015015609)	cntn4 (ENSSFOG00015015791)	ENSSFOG00015015845 ##11	ENSSFOG00015015929	ENSSFOG00015016050 ##11	pdzrn3b (ENSSFOG00015016102) #18	ENSSFOG00015029341	ppp4r2b (ENSSFOG00015016134)	gxylt2 (ENSSFOG00015016186) #20	shq1 (ENSSFOG00015016241) #21	RYBP (ENSSFOG00015025952) #22	prok2 (ENSSFOG00015016263)	gpr27 (ENSSFOG00015030628) #24	EIF4E3 (ENSSFOG00015016279) #25	foxp1b (ENSSFOG00015016318)	mdfic2 (ENSSFOG00015016439) #27	zgc:113054 (ENSSFOG00015016449)	mitfa (ENSSFOG00015016521) #28	FRMD4B (ENSSFOG00015016690) #29	arl6ip5a (ENSSFOG00015025753) #16	uba3 (ENSSFOG00015016867)	tmf1 (ENSSFOG00015016904)	EOGT (ENSSFOG00015016943)	tafa4b (ENSSFOG00015016988)	TAFA1 (ENSSFOG00015017007)	suclg2 (ENSSFOG00015017035)
Clupeocephala	ANCESTRAL SPECIES	20	ENSGT00940000156091.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00940000165667	ENSGT01100000263545.a.b.c.a	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000167414	ENSGT00940000155198.B ##11	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b	ENSGT00730000111641.b #27	ENSGT00940000165309	ENSGT00390000011238	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00940000157154.d	ENSGT00940000162663	ENSGT00940000177280
Otomorpha	ANCESTRAL SPECIES	112	ENSGT00940000154343.fb	ENSGT00510000048007	ENSGT00940000162218	ENSGT00530000063435.b	ENSGT00940000165103.b	ENSGT00840000129953	ENSGT00940000164786.a	ENSGT00940000167414	ENSGT00940000155198.B ##11	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000165920.b	ENSGT00730000111641.b #27	ENSGT00940000165309	ENSGT00390000011238	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00940000157154.d	ENSGT00940000162663	ENSGT00940000155071.C	ENSGT00940000158384.d
Clupeiformes	ANCESTRAL SPECIES	27				ENSGT00390000008983.a	ENSGT00940000165984	ENSGT00940000165103.b	ENSGT00840000129953	ENSGT00940000164786.a	ENSGT00940000155198.B ##11	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000165920.b	ENSGT00940000165309	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00940000157154.d	ENSGT00940000162663	ENSGT00940000155071.C	ENSGT00940000158384.d	ENSGT00950000183080.a.a.f	ENSGT00940000156107.e.b
Denticle herring	DUPLICATION
Denticle herring	MODERN SPECIES	3	ENSDCDG00000032216	sumf1 (ENSDCDG00000032222)	ENSDCDG00000032245	ENSDCDG00000032248	FUT9 (ENSDCDG00000032252)	epha2a (ENSDCDG00000032258)	rbm19 (ENSDCDG00000032266)	cntn4 (ENSDCDG00000032350)	ENSDCDG00000034027 ##11	ENSDCDG00000034312	ENSDCDG00000034577 ##11	pdzrn3b (ENSDCDG00000034720) #18	ppp4r2b (ENSDCDG00000034728)	gxylt2 (ENSDCDG00000034731) #20	shq1 (ENSDCDG00000034732) #21	rybpb (ENSDCDG00000034734) #22	prok2 (ENSDCDG00000034735)	gpr27 (ENSDCDG00000034737) #24	foxp1b (ENSDCDG00000034762)	zgc:113054 (ENSDCDG00000034956)	mitfa (ENSDCDG00000034964) #28	FRMD4B (ENSDCDG00000034978) #29	arl6ip5a (ENSDCDG00000034990) #16	trnt1 (ENSDCDG00000034993) #9	ENSDCDG00000034996	lrrn1 (ENSDCDG00000002962)	setmar (ENSDCDG00000002977)	ENSDCDG00000003598	ENSDCDG00000013280	bhlhe40 (ENSDCDG00000013282)	arf3b (ENSDCDG00000013288)
Denticle herring	MODERN SPECIES	1	cyc1 (ENSDCDG00000022424)	eif2s2 (ENSDCDG00000022422)	ENSDCDG00000022289	racgap1 (ENSDCDG00000022276)	ENSDCDG00000022274	bin2a (ENSDCDG00000022272)	ENSDCDG00000022270	dazap2 (ENSDCDG00000022266)	pou6f1 (ENSDCDG00000022264)	TFCP2 (ENSDCDG00000021532)	CSRNP2 (ENSDCDG00000021500)	itga5 (ENSDCDG00000021261)	RAPGEF3 (ENSDCDG00000021172)	slc48a1a (ENSDCDG00000021146)	SLC26A9 (ENSDCDG00000021145)	rybpa (ENSDCDG00000021143) #22	eif4e3 (ENSDCDG00000021142) #25	foxp1a (ENSDCDG00000019750)	ENSDCDG00000019714 #27	MITF (ENSDCDG00000019641) #28	FRMD4B (ENSDCDG00000019629) #29	LMOD3 (ENSDCDG00000019617)	arl6ip5b (ENSDCDG00000019614) #16	UBA3 (ENSDCDG00000018430)	TAFA3 (ENSDCDG00000018412)	TAFA1 (ENSDCDG00000018408)	slc16a7 (ENSDCDG00000018233)	ENSDCDG00000018226	NFASC (ENSDCDG00000017906)	ENSDCDG00000017007	ENSDCDG00000014685
Atlantic herring	DUPLICATION
Atlantic herring	MODERN SPECIES	20	ppdpfb (ENSCHAG00000020738)	tpd52l2b (ENSCHAG00000020769)	trim101 (ENSCHAG00000020816)	DNAJC5 (ENSCHAG00000020820)	gid8b (ENSCHAG00000020840)	slc17a9b (ENSCHAG00000020857)	bhlhe23 (ENSCHAG00000020960)	YTHDF1 (ENSCHAG00000020969)	rnd1a (ENSCHAG00000021003)	prim1 (ENSCHAG00000021022)	tfip11 (ENSCHAG00000021065)	ENSCHAG00000021125	RAPGEF3 (ENSCHAG00000021231)	slc48a1a (ENSCHAG00000022867)	SLC26A9 (ENSCHAG00000022875)	rybpa (ENSCHAG00000022891) #22	ENSCHAG00000022899	eif4e3 (ENSCHAG00000022905) #25	foxp1a (ENSCHAG00000022946)	ENSCHAG00000023012	MITF (ENSCHAG00000023027) #28	FRMD4B (ENSCHAG00000023105) #29	LMOD3 (ENSCHAG00000023339)	arl6ip5b (ENSCHAG00000023343) #16	UBA3 (ENSCHAG00000023367)	TAFA3 (ENSCHAG00000023583)	TAFA1 (ENSCHAG00000023591)	slc16a7 (ENSCHAG00000023605)	ENSCHAG00000023706	NFASC (ENSCHAG00000023886)	ENSCHAG00000026450
Atlantic herring	MODERN SPECIES	21	sumf1 (ENSCHAG00000027805)	ENSCHAG00000027799	ENSCHAG00000027795	ENSCHAG00000027792	epha2a (ENSCHAG00000027782)	rbm19 (ENSCHAG00000027761)	cntn4 (ENSCHAG00000027695)	ENSCHAG00000027584 ##11	ENSCHAG00000026930	ENSCHAG00000025815 ##11	ENSCHAG00000025710	pdzrn3b (ENSCHAG00000025689) #18	ppp4r2b (ENSCHAG00000025680)	gxylt2 (ENSCHAG00000025668) #20	shq1 (ENSCHAG00000025662) #21	RYBP (ENSCHAG00000025660) #22	prok2 (ENSCHAG00000025655)	gpr27 (ENSCHAG00000025654) #24	foxp1b (ENSCHAG00000025407)	zgc:113054 (ENSCHAG00000025384)	mitfa (ENSCHAG00000025374) #28	FRMD4B (ENSCHAG00000025306) #29	arl6ip5a (ENSCHAG00000025298) #16	trnt1 (ENSCHAG00000025289) #9	ENSCHAG00000025284	lrrn1 (ENSCHAG00000025281)	setmar (ENSCHAG00000025278)	ITPR1 (ENSCHAG00000018029)	bhlhe40 (ENSCHAG00000017831)	ARF3 (ENSCHAG00000017812)	ERBB3 (ENSCHAG00000013607)
Otophysi	ANCESTRAL SPECIES	68	ENSGT00940000154343.fb	ENSGT00510000048007	ENSGT00940000162218	ENSGT00530000063435.b	ENSGT00940000165103.b	ENSGT00840000129953	ENSGT00940000164786.a	ENSGT00940000167414	ENSGT00940000155198.B ##11	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000165920.b	ENSGT00730000111641.b #27	ENSGT00940000165309	ENSGT00390000011238	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00940000157154.d	ENSGT00390000014365	ENSGT00390000004490	ENSGT01030000235084
Characiphysae	ANCESTRAL SPECIES	104											ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000165920.b	ENSGT00730000111641.b #27	ENSGT00940000165309	ENSGT00390000011238	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00940000157154.d	ENSGT00390000014365	ENSGT00390000004490	ENSGT01030000235084
Characiphysae_b	ANCESTRAL SPECIES	114											ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000165920.b	ENSGT00730000111641.b #27	ENSGT00940000165309	ENSGT00390000011238	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00940000157154.d	ENSGT00390000014365	ENSGT00390000004490	ENSGT01030000235084
Electric eel	DUPLICATION
Electric eel	MODERN SPECIES	36	ENSEEEG00000007265	sult2st2 (ENSEEEG00000007261)	ENSEEEG00000007258	ENSEEEG00000004678	WFIKKN1 (ENSEEEG00000004580)	tob1b (ENSEEEG00000004578)	SPAG9 (ENSEEEG00000004540)	DAGLB (ENSEEEG00000004532)	KDELR2 (ENSEEEG00000004529)	mettl9 (ENSEEEG00000004528)	ENSEEEG00000004372 ##11	pdzrn3b (ENSEEEG00000004359) #18	ppp4r2b (ENSEEEG00000004352)	gxylt2 (ENSEEEG00000004348) #20	shq1 (ENSEEEG00000004346) #21	rybpb (ENSEEEG00000004345) #22	prok2 (ENSEEEG00000004344)	gpr27 (ENSEEEG00000004343) #24	foxp1b (ENSEEEG00000004114)	mitfa (ENSEEEG00000004103) #28	FRMD4B (ENSEEEG00000004100) #29	arl6ip5a (ENSEEEG00000004098) #16	trnt1 (ENSEEEG00000004093) #9	ENSEEEG00000004083	ENSEEEG00000004072
Electric eel	MODERN SPECIES	294		wfdc2 (ENSEEEG00000009142)	PIGT (ENSEEEG00000009141)	phactr3a (ENSEEEG00000009140)	ppp1r3da (ENSEEEG00000009138)	ENSEEEG00000009137	ttll9 (ENSEEEG00000009134)	edn3b (ENSEEEG00000009132)	ENSEEEG00000009108	ENSEEEG00000008956	ENSEEEG00000008879	ENSEEEG00000008877	ENSEEEG00000008779	PDZRN3 (ENSEEEG00000008753) #18	ppp4r2a (ENSEEEG00000008746)	ENSEEEG00000008744 #22	eif4e3 (ENSEEEG00000008740) #25	foxp1a (ENSEEEG00000008507)	ENSEEEG00000007754	eif4ba (ENSEEEG00000007739)
Characoidei	ANCESTRAL SPECIES	347											ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24
Mexicana tetra	DUPLICATION
Mexicana tetra	MODERN SPECIES	816										ENSAMXG00000038375 ##11	pdzrn3b (ENSAMXG00000037592) #18	ppp4r2b (ENSAMXG00000029760)	gxylt2 (ENSAMXG00000036219) #20	shq1 (ENSAMXG00000043822) #21	ENSAMXG00000025407	rybpb (ENSAMXG00000034604) #22	prok2 (ENSAMXG00000003435)	ENSAMXG00000043211	gpr27 (ENSAMXG00000025552) #24
Mexicana tetra	MODERN SPECIES	6	DAD1 (ENSAMXG00000036732)	GMEB2 (ENSAMXG00000001001)	pdyn (ENSAMXG00000039841)	stk35 (ENSAMXG00000035676)	ENSAMXG00000040243	ENSAMXG00000033667	scube3 (ENSAMXG00000001024)	ENSAMXG00000001044	pfkfb2a (ENSAMXG00000001046)	myl9a (ENSAMXG00000041368)	ENSAMXG00000029392	DLGAP4 (ENSAMXG00000001057)	ENSAMXG00000017525	PDZRN3 (ENSAMXG00000030758) #18	ppp4r2a (ENSAMXG00000037385)	rybpa (ENSAMXG00000043350) #22	eif4e3 (ENSAMXG00000036675) #25	foxp1a (ENSAMXG00000017401)	ENSAMXG00000017363	ENSAMXG00000030002	eif4ba (ENSAMXG00000041675)	ENSAMXG00000036107	krt18a.2 (ENSAMXG00000042511)	krt18a.1 (ENSAMXG00000033930)	krt8 (ENSAMXG00000036187)	krt5 (ENSAMXG00000040054)	zgc:171775 (ENSAMXG00000017218)	ENSAMXG00000017120	ENSAMXG00000017081	slc16a7 (ENSAMXG00000039884)	prkcbp1l (ENSAMXG00000017042)
Red-bellied piranha	DUPLICATION
Red-bellied piranha	MODERN SPECIES	332													ENSPNAG00000026757 ##11	pdzrn3b (ENSPNAG00000026812) #18	shq1 (ENSPNAG00000026840) #21	rybpb (ENSPNAG00000026904) #22	prok2 (ENSPNAG00000026944)	gpr27 (ENSPNAG00000005514) #24
Red-bellied piranha	MODERN SPECIES	262	PIGT (ENSPNAG00000005323)	phactr3a (ENSPNAG00000007759)	ENSPNAG00000000437	ppp1r3da (ENSPNAG00000007738)	ENSPNAG00000007730	ttll9 (ENSPNAG00000029756)	edn3b (ENSPNAG00000006891)	ENSPNAG00000029727	ENSPNAG00000029671	ENSPNAG00000029658	ENSPNAG00000029650	chl1a (ENSPNAG00000004665) #15	ENSPNAG00000005399	PDZRN3 (ENSPNAG00000029378) #18	ENSPNAG00000005920	rybpa (ENSPNAG00000006083) #22	eif4e3 (ENSPNAG00000029186) #25	foxp1a (ENSPNAG00000029153)	ENSPNAG00000029084
Channel catfish	DUPLICATION
Channel catfish	MODERN SPECIES	2	blcap (ENSIPUG00000001560)	ripor3 (ENSIPUG00000001543)	ENSIPUG00000001523	ENSIPUG00000001509	RBPJL (ENSIPUG00000001498)	matn4 (ENSIPUG00000001441)	or90a1 (ENSIPUG00000001430)	or90a1 (ENSIPUG00000001407)	ENSIPUG00000001400	or90h4 (ENSIPUG00000001395)	ENSIPUG00000001347 ##11	pdzrn3 (ENSIPUG00000001304) #18	ppp4r2 (ENSIPUG00000001286)	gxylt2 (ENSIPUG00000001272) #20	shq1 (ENSIPUG00000001247) #21	rybpb (ENSIPUG00000001221) #22	PROK1 (ENSIPUG00000001210)	gpr27 (ENSIPUG00000001194) #24	ENSIPUG00000001179	foxp1 (ENSIPUG00000001094)	mdfic2 (ENSIPUG00000001077) #27	mitf (ENSIPUG00000001061) #28	frmd4b (ENSIPUG00000001007) #29	Arl6ip5 (ENSIPUG00000000996) #16	trnt1 (ENSIPUG00000000971) #9	ENSIPUG00000000965	lrrn1 (ENSIPUG00000000963)	glyctk (ENSIPUG00000000957)	tcta (ENSIPUG00000000955)	ENSIPUG00000000948	tnfrsf18 (ENSIPUG00000000945)
Channel catfish	MODERN SPECIES	6	sac3d1 (ENSIPUG00000008661)	haus8 (ENSIPUG00000008618)	snx21 (ENSIPUG00000008604)	wfdc2 (ENSIPUG00000008599)	PIGT (ENSIPUG00000008511)	phactr3a (ENSIPUG00000008476)	ENSIPUG00000008435	ppp1r3da (ENSIPUG00000008424)	ENSIPUG00000008408	ttll9 (ENSIPUG00000008388)	ENSIPUG00000008376	ENSIPUG00000008304	ENSIPUG00000008245	ENSIPUG00000007259	ppp4r2a (ENSIPUG00000007160)	rybpa (ENSIPUG00000007091) #22	eif4e3 (ENSIPUG00000007049) #25	foxp1a (ENSIPUG00000007032)	tns2 (ENSIPUG00000006920)	eif4b (ENSIPUG00000006890)	krt18a.1 (ENSIPUG00000006843)	krt8 (ENSIPUG00000006811)	krt5 (ENSIPUG00000006775)	zgc:171775 (ENSIPUG00000006710)	ENSIPUG00000006663	ENSIPUG00000006636	slc16a7 (ENSIPUG00000006625)	prkcbp1l (ENSIPUG00000006572)	mapre1b (ENSIPUG00000006498)	lama5 (ENSIPUG00000005841)	adrm1 (ENSIPUG00000005765)
Cyprinoidei	ANCESTRAL SPECIES	2	ENSGT00940000154343.fb	ENSGT00940000174411	ENSGT00940000162218	ENSGT00530000063435.b	ENSGT00940000165103.b	ENSGT00840000129953	ENSGT00940000164786.a	ENSGT00940000167414	ENSGT00940000155198.B ##11	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000165920.b	ENSGT00730000111641.b.a #27	ENSGT00940000165309	ENSGT00390000011238	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00940000157154.d	ENSGT00390000014365	ENSGT00390000004490	ENSGT01030000235084
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	9	ENSGT00950000183004.a.a.b.e	ENSGT00390000005497.`b.a	ENSGT00940000155048.d.b.b	ENSGT00940000154343.fb.b	ENSGT00530000063435.b.c	ENSGT00940000165103.b.g	ENSGT00840000129953.e	ENSGT00940000164786.a.a	ENSGT00940000167414.b	ENSGT00940000165371.a.b	ENSGT00940000155198.A.d ##11	ENSGT00950000183062.a.a.a.k.b #18	ENSGT00940000162859.o.b	ENSGT00940000158065.a.b #20	ENSGT00390000007605.c #21	ENSGT00390000013995.b.a.o.a #22	ENSGT00940000167138.c	ENSGT00890000139436.A.a.c #24
Goldfish	MODERN SPECIES	24	ENSCARG00000044090	cfap20dc (ENSCARG00000044127)	PTPRG (ENSCARG00000044224)	tardbpb (ENSCARG00000046951)	H6PD (ENSCARG00000047425)	epha2a (ENSCARG00000047562)	rbm19 (ENSCARG00000047670)	cntn4 (ENSCARG00000048270)	ENSCARG00000056867	ENSCARG00000062000	ENSCARG00000064643 ##11	pdzrn3b (ENSCARG00000064823) #18	ppp4r2b (ENSCARG00000017325)	gxylt2 (ENSCARG00000017360) #20	shq1 (ENSCARG00000017391) #21	rybpb (ENSCARG00000017435) #22	prok2 (ENSCARG00000017460)	gpr27 (ENSCARG00000017466) #24	ATP10A (ENSCARG00000017533)	ube3a (ENSCARG00000018573)	ENSCARG00000018944	stk35l (ENSCARG00000018954)	bin2b (ENSCARG00000018963)	slc48a1b (ENSCARG00000018999)	ENSCARG00000019005	vdrb (ENSCARG00000019030)	eif4bb (ENSCARG00000019145)	ENSCARG00000019359	gpr84 (ENSCARG00000019362)	stat2 (ENSCARG00000019373)	c1galt1lb (ENSCARG00000019411)
Cyprininae_a	ANCESTRAL SPECIES	68	ENSGT00390000005497.ab	ENSGT00950000183004.a.a.b.e	ENSGT00940000155048.d.b.b	ENSGT00940000154343.fb.b	ENSGT00530000063435.b.c	ENSGT00940000165103.b.g	ENSGT00840000129953.e	ENSGT00940000164786.a.a	ENSGT00940000167414.b	ENSGT00940000165371.a.b	ENSGT00940000155198.A.d ##11	ENSGT00950000183062.a.a.a.k.b #18	ENSGT00940000162859.o.b	ENSGT00940000158065.a.b #20	ENSGT00390000007605.c #21	ENSGT00390000013995.b.a.o.a #22	ENSGT00940000167138.c	ENSGT00890000139436.A.a.c #24	ENSGT00940000165920.b.b	ENSGT00730000111641.b.b #27	ENSGT00940000165309.c	ENSGT00940000156326.a.b.a #28	ENSGT01020000230354.A.a.a.a #29	ENSGT00390000008631.a.o.a.j #16	ENSGT00390000009678.a #9	ENSGT01050000244882.b.c.a.a.a	ENSGT00940000157154.d.c	ENSGT00390000014365.d	ENSGT00390000004490.f	ENSGT00940000174943.b	ENSGT00940000154861.n.b.b
Common carp reference	MODERN SPECIES	16	tardbpb (ENSCCRG00000048153)	ENSCCRG00000057366	epha2a (ENSCCRG00000062010)	rbm19 (ENSCCRG00000007728)	cntn4 (ENSCCRG00000068682)	ENSCCRG00000005897	ENSCCRG00000064191	ENSCCRG00000036239	ENSCCRG00000052646	ENSCCRG00000025712 ##11	ENSCCRG00000057316	pdzrn3b (ENSCCRG00000007526) #18	ppp4r2b (ENSCCRG00000059825)	gxylt2 (ENSCCRG00000063702) #20	shq1 (ENSCCRG00000069665) #21	rybpb (ENSCCRG00000082479) #22	prok2 (ENSCCRG00000050418)	gpr27 (ENSCCRG00000072623) #24	foxp1b (ENSCCRG00000068906)	mdfic2 (ENSCCRG00000062468) #27	zgc:113054 (ENSCCRG00000078741)	mitfa (ENSCCRG00000081533) #28	FRMD4B (ENSCCRG00000077808) #29	arl6ip5a (ENSCCRG00000037540) #16	ENSCCRG00000064951 #9	ENSCCRG00000079901	lrrn1 (ENSCCRG00000075719)	glyctk (ENSCCRG00000072011)	ENSCCRG00000079862	arl8ba (ENSCCRG00000052383)	edem1 (ENSCCRG00000052367)
Golden-line barbel	MODERN SPECIES	265						epha2a (ENSSGRG00000027240)	rbm19 (ENSSGRG00000027262)	cntn4 (ENSSGRG00000028145)	ENSSGRG00000028206	ENSSGRG00000028503	ENSSGRG00000028514 ##11	pdzrn3b (ENSSGRG00000028720) #18	ppp4r2b (ENSSGRG00000028723)	ENSSGRG00000028816	shq1 (ENSSGRG00000028817) #21	rybpb (ENSSGRG00000028818) #22	prok2 (ENSSGRG00000028819)	gpr27 (ENSSGRG00000028820) #24	foxp1b (ENSSGRG00000028821)	MDFIC2 (ENSSGRG00000028859) #27	zgc:113054 (ENSSGRG00000028860)	mitfa (ENSSGRG00000028862) #28	FRMD4B (ENSSGRG00000028868) #29	arl6ip5a (ENSSGRG00000028870) #16	trnt1 (ENSSGRG00000028871) #9	ENSSGRG00000028872
Cyprininae	ANCESTRAL SPECIES	140	ENSGT00940000155048.d.b.a	ENSGT00940000154343.fb.a	ENSGT00940000174411	ENSGT00940000162218	ENSGT00530000063435.b.d	ENSGT00940000165103.b.h	ENSGT00840000129953.f	ENSGT00940000164786.a.b	ENSGT00940000167414.a	ENSGT00940000165371.a.a	ENSGT00940000155198.A.c ##11	ENSGT00950000183062.a.a.a.k.a #18	ENSGT00940000162859.o.a	ENSGT00940000158065.b #20	ENSGT00390000007605.d #21	ENSGT00390000013995.b.a.o.b #22	ENSGT00940000167138.d	ENSGT00890000139436.A.a.d #24	ENSGT00940000165920.b.b	ENSGT00730000111641.b.a #27	ENSGT00940000165309.d	ENSGT00390000011238	ENSGT00940000156326.a.b.b #28	ENSGT01020000230354.A.a.a.b #29	ENSGT00390000008631.a.o.a.i #16	ENSGT00390000009678.b #9	ENSGT01050000244882.b.c.a.a.b	ENSGT00940000157154.d.d	ENSGT00390000014365.c	ENSGT00390000004490.e	ENSGT01030000235084.a
Goldfish	MODERN SPECIES	46	ENSCARG00000056492	ENSCARG00000055892	ENSCARG00000055837	PTPRG (ENSCARG00000055791)	tardbpb (ENSCARG00000055360)	cenps (ENSCARG00000055300)	rbp7b (ENSCARG00000055270)	H6PD (ENSCARG00000054970)	epha2a (ENSCARG00000054314)	cntn4 (ENSCARG00000047197)	ENSCARG00000039954	ENSCARG00000038949	ENSCARG00000033727 ##11	pdzrn3b (ENSCARG00000033469) #18	gxylt2 (ENSCARG00000033387) #20	rybpb (ENSCARG00000033322) #22	prok2 (ENSCARG00000033291)	gpr27 (ENSCARG00000033279) #24	foxp1b (ENSCARG00000030943)	zgc:113054 (ENSCARG00000030827)	mitfa (ENSCARG00000030609) #28	FRMD4B (ENSCARG00000030526) #29	arl6ip5a (ENSCARG00000030500) #16	trnt1 (ENSCARG00000030454) #9	ENSCARG00000030439	lrrn1 (ENSCARG00000030435)	glyctk (ENSCARG00000030429)	tcta (ENSCARG00000030413)	ENSCARG00000030408	tnfrsf18 (ENSCARG00000030388)	arl8ba (ENSCARG00000030355)
Cyprininae_a	ANCESTRAL SPECIES	20	ENSGT00940000155048.d.b.a	ENSGT00940000154343.fb.a	ENSGT00940000174411	ENSGT00940000162218	ENSGT00530000063435.b.d	ENSGT00940000165103.b.h	ENSGT00840000129953.f	ENSGT00940000164786.a.b	ENSGT00940000167414.a	ENSGT00940000165371.a.a	ENSGT00940000155198.A.c ##11	ENSGT00950000183062.a.a.a.k.a #18	ENSGT00940000162859.o.a	ENSGT00940000158065.b #20	ENSGT00390000007605.d #21	ENSGT00390000013995.b.a.o.b #22	ENSGT00940000167138.d	ENSGT00890000139436.A.a.d #24	ENSGT00940000165920.b.a	ENSGT00730000111641.b.a #27	ENSGT00940000165309.d	ENSGT00390000011238	ENSGT00940000156326.a.b.b #28	ENSGT01020000230354.A.a.a.b #29	ENSGT00390000008631.a.o.a.i #16	ENSGT00390000009678.b #9	ENSGT01050000244882.b.c.a.a.b	ENSGT00940000157154.d.d	ENSGT00390000014365.c	ENSGT00390000004490.e	ENSGT01030000235084.a
Golden-line barbel	MODERN SPECIES	59												pdzrn3b (ENSSGRG00000038484) #18	ppp4r2b (ENSSGRG00000038482)	gxylt2 (ENSSGRG00000038480) #20	shq1 (ENSSGRG00000038472) #21	rybpb (ENSSGRG00000038470) #22	prok2 (ENSSGRG00000038468)	gpr27 (ENSSGRG00000038466) #24	foxp1b (ENSSGRG00000038329)	MDFIC2 (ENSSGRG00000038321) #27	zgc:113054 (ENSSGRG00000038319)	mitfa (ENSSGRG00000038313) #28	FRMD4B (ENSSGRG00000038299) #29	arl6ip5a (ENSSGRG00000038297) #16	arl6ip5a (ENSSGRG00000038295) #16	ENSSGRG00000038291	ENSSGRG00000038257	lrrn1 (ENSSGRG00000038253)	glyctk (ENSSGRG00000038252)	tcta (ENSSGRG00000038251)	ENSSGRG00000038250
Common carp reference	MODERN SPECIES	10	ENSCCRG00000060611	ENSCCRG00000051131	tardbpb (ENSCCRG00000013752)	rbp7b (ENSCCRG00000061221)	ENSCCRG00000072777	epha2a (ENSCCRG00000068142)	rbm19 (ENSCCRG00000008461)	cntn4 (ENSCCRG00000066369)	ENSCCRG00000018336	ENSCCRG00000018444	ENSCCRG00000047782 ##11	pdzrn3b (ENSCCRG00000002306) #18	ppp4r2b (ENSCCRG00000002302)	gxylt2 (ENSCCRG00000066461) #20	shq1 (ENSCCRG00000060346) #21	rybpb (ENSCCRG00000071274) #22	prok2 (ENSCCRG00000065684)	foxp1b (ENSCCRG00000020103)	MDFIC2 (ENSCCRG00000053946) #27	zgc:113054 (ENSCCRG00000062971)	ENSCCRG00000059648	mitfa (ENSCCRG00000067135) #28	FRMD4B (ENSCCRG00000080805) #29	arl6ip5a (ENSCCRG00000076953) #16	trnt1 (ENSCCRG00000078876) #9	ENSCCRG00000022783	lrrn1 (ENSCCRG00000066281)	tcta (ENSCCRG00000075404)	glyctk (ENSCCRG00000073402)	ENSCCRG00000069540	tnfrsf18 (ENSCCRG00000068200)
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	294			ENSGT00390000018558.e	ENSGT00940000157562.q.b.b	ENSGT00530000063859.b.a	ENSGT00940000161921.e.b.a	ENSGT00940000154543.c.a.b	ENSGT00940000159879.a	ENSGT00950000183053.C.b.c	ENSGT00940000155617.A.i.a	ENSGT00940000164786.b.d.a	ENSGT00940000160080.f #15	ENSGT00940000164703.b.a.b	ENSGT00950000183062.a.a.a.l.a #18	ENSGT00940000162859.p.c	ENSGT00390000013995.b.a.p.a #22	ENSGT00940000155865.c.a.a #25	ENSGT00940000165920.a.c	ENSGT00940000163886.B.b.a.g.a	ENSGT00940000153336.a.a.c	ENSGT00940000163961.a.a.b	ENSGT00940000163961.a.a.a.a	ENSGT00940000161090.B.c.a.a	ENSGT00940000161090.B.c.b.a.a.a	ENSGT00940000166426.b	ENSGT00940000166426.a	ENSGT01020000230394.e.a.a.b.a.a.b.a.b.a	ENSGT00940000157877.a	ENSGT00940000164303.b.b.b	ENSGT00940000164303.b.b.a	ENSGT00940000154897.q
Goldfish	MODERN SPECIES	15	ENSCARG00000012014	snx21 (ENSCARG00000012020)	wfdc2 (ENSCARG00000012027)	ENSCARG00000012036	phactr3a (ENSCARG00000012085)	ENSCARG00000012140	ppp1r3da (ENSCARG00000012161)	ENSCARG00000012165	ttll9 (ENSCARG00000012185)	edn3b (ENSCARG00000012250)	ENSCARG00000012306	ENSCARG00000012842	ENSCARG00000012853	PDZRN3 (ENSCARG00000012864) #18	ppp4r2a (ENSCARG00000012875)	rybpa (ENSCARG00000012887) #22	eif4e3 (ENSCARG00000012894) #25	foxp1a (ENSCARG00000012910)	ENSCARG00000013092	eif4ba (ENSCARG00000013263)	krt5 (ENSCARG00000013836)	krt18a.1 (ENSCARG00000013904)	krt8 (ENSCARG00000013919)	zgc:171775 (ENSCARG00000013952)	ENSCARG00000014087	ENSCARG00000014558	prkcbp1l (ENSCARG00000014594)	mapre1b (ENSCARG00000014927)	lama5 (ENSCARG00000014937)	adrm1 (ENSCARG00000015090)	osbpl2b (ENSCARG00000015137)
Cyprininae_a	ANCESTRAL SPECIES	301			ENSGT00390000018558.f.b	ENSGT00940000157562.q.b.b	ENSGT00530000063859.b.a	ENSGT00940000161921.e.b.a	ENSGT00940000154543.c.a.b	ENSGT00940000159879.a	ENSGT00950000183053.C.b.c	ENSGT00940000155617.A.i.a	ENSGT00940000164786.b.d.a	ENSGT00940000160080.f #15	ENSGT00940000164703.b.a.b	ENSGT00950000183062.a.a.a.l.a #18	ENSGT00940000162859.p.c	ENSGT00390000013995.b.a.p.a #22	ENSGT00940000155865.c.a.a #25	ENSGT00940000165920.a.d	ENSGT00940000163886.B.b.a.g.b	ENSGT00940000153336.a.a.d.a	ENSGT00940000163961.a.a.b.a	ENSGT00940000163961.a.a.a.b	ENSGT00940000166426.a	ENSGT01020000230394.e.a.a.b.a.a.b.a.b.a.b	ENSGT00940000164303.b.b.a	ENSGT00940000154897.q.b	ENSGT00490000043329.a.a.a.vb.a.c.a	ENSGT00940000156537.i	ENSGT00390000013839.c.a	ENSGT00940000158762.e.a	ENSGT00950000182982.B.c.a.h
Common carp reference	MODERN SPECIES	49	wfdc2 (ENSCCRG00000022864)	ENSCCRG00000059804	ENSCCRG00000032222	phactr3a (ENSCCRG00000067302)	ENSCCRG00000071496	ppp1r3da (ENSCCRG00000065533)	ENSCCRG00000016001	ttll9 (ENSCCRG00000036170)	edn3b (ENSCCRG00000067248)	ENSCCRG00000036237	ENSCCRG00000052459	chl1a (ENSCCRG00000032159) #15	ENSCCRG00000012782	ENSCCRG00000012702 #18	ppp4r2a (ENSCCRG00000072219)	rybpa (ENSCCRG00000012671) #22	eif4e3 (ENSCCRG00000012656) #25	foxp1a (ENSCCRG00000008776)	ENSCCRG00000007907	eif4ba (ENSCCRG00000007881)	krt18a.2 (ENSCCRG00000036558)	krt18a.1 (ENSCCRG00000065343)	krt8 (ENSCCRG00000037586)	krt5 (ENSCCRG00000058161)	zgc:171775 (ENSCCRG00000011185)	ENSCCRG00000028115	ENSCCRG00000031242	prkcbp1l (ENSCCRG00000031253)	mapre1b (ENSCCRG00000011200)	lama5 (ENSCCRG00000009016)	adrm1 (ENSCCRG00000056926)
Golden-line barbel	MODERN SPECIES	1206												ENSSGRG00000018228	ENSSGRG00000018227	PDZRN3 (ENSSGRG00000018226) #18	ppp4r2a (ENSSGRG00000018225)	rybpa (ENSSGRG00000018223) #22	eif4e3 (ENSSGRG00000018211) #25	foxp1a (ENSSGRG00000018210)	eif4ba (ENSSGRG00000018109)	ENSSGRG00000018108	krt18a.2 (ENSSGRG00000018107)	krt18a.1 (ENSSGRG00000018105)	krt8 (ENSSGRG00000018104)
Cyprininae	ANCESTRAL SPECIES	392	ENSGT00530000063759.b.d	ENSGT00940000165527.b.b	ENSGT00390000018558.f	ENSGT00940000157562.q.b.a	ENSGT00530000063859.b.b	ENSGT00940000161921.e.b.b	ENSGT00940000154543.c.a.a	ENSGT00940000159879.b	ENSGT00950000183053.C.b.d	ENSGT00940000155617.A.i.b	ENSGT00940000164786.b.c	ENSGT00940000160080.e #15	ENSGT00940000164703.b.a.a	ENSGT00950000183062.a.a.a.l.b #18	ENSGT00940000162859.p.d	ENSGT00390000013995.b.a.p.b #22	ENSGT00940000155865.c.a.b #25	ENSGT00940000165920.a.d	ENSGT00940000163886.B.b.a.g.b	ENSGT00940000153336.a.a.d	ENSGT00940000163961.a.a.a.b
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	854														PDZRN3 (ENSCARG00000057017) #18	ppp4r2a (ENSCARG00000057058)	rybpa (ENSCARG00000057075) #22	eif4e3 (ENSCARG00000057100) #25	foxp1a (ENSCARG00000057151)	ENSCARG00000058329
Goldfish	MODERN SPECIES	1395										chl1a (ENSCARG00000039031) #15	ENSCARG00000040489	ENSCARG00000040500	ENSCARG00000040515	PDZRN3 (ENSCARG00000040550) #18	ppp4r2a (ENSCARG00000040572)	rybpa (ENSCARG00000040588) #22	eif4e3 (ENSCARG00000040605) #25	foxp1a (ENSCARG00000040645)	ENSCARG00000040932	eif4ba (ENSCARG00000043508)	krt18a.1 (ENSCARG00000043604)	krt5 (ENSCARG00000043656)	zgc:171775 (ENSCARG00000044746)	ENSCARG00000044904	slc16a7 (ENSCARG00000049655)
Cyprininae_a	ANCESTRAL SPECIES	69																ENSGT00390000013995.b.a.p.b #22	ENSGT00940000155865.c.a.b #25	ENSGT00940000165920.a.c	ENSGT00940000163886.B.b.a.g.a	ENSGT00940000153336.a.a.c	ENSGT00940000163961.a.a.b.b	ENSGT00940000163961.a.a.a.a	ENSGT00940000161090.B.c.a.a	ENSGT00940000161090.B.c.b.a.a.a	ENSGT00940000166426.b	ENSGT01020000230394.e.a.a.b.a.a.b.a.b.a.a	ENSGT00940000157877.a	ENSGT00940000164303.b.b.b	ENSGT00940000154897.q.a	ENSGT00490000043329.a.a.a.vb.a.d	ENSGT00940000156537.j
Common carp reference	MODERN SPECIES	11	wfdc2 (ENSCCRG00000032210)	ENSCCRG00000022888	phactr3a (ENSCCRG00000055593)	ENSCCRG00000056662	ppp1r3da (ENSCCRG00000066232)	ENSCCRG00000077625	ttll9 (ENSCCRG00000016006)	edn3b (ENSCCRG00000055342)	ENSCCRG00000016033	ENSCCRG00000069440	chl1a (ENSCCRG00000040485) #15	ENSCCRG00000064527	ENSCCRG00000025925	ENSCCRG00000044548 #18	ppp4r2a (ENSCCRG00000044531)	rybpa (ENSCCRG00000044527) #22	foxp1a (ENSCCRG00000075573)	ENSCCRG00000036606	ENSCCRG00000080752	eif4ba (ENSCCRG00000036570)	krt18a.2 (ENSCCRG00000036562)	krt18a.1 (ENSCCRG00000036542)	ENSCCRG00000014454	ENSCCRG00000069574	prkcbp1l (ENSCCRG00000011204)	slc16a7 (ENSCCRG00000011211)	mapre1b (ENSCCRG00000031264)	lama5 (ENSCCRG00000009114)	adrm1 (ENSCCRG00000009064)	osbpl2b (ENSCCRG00000009318)	ENSCCRG00000053523
Golden-line barbel	MODERN SPECIES	425	mrgbp (ENSSGRG00000036287)	ENSSGRG00000036293	ENSSGRG00000036294	snx21 (ENSSGRG00000036295)	wfdc2 (ENSSGRG00000036297)	PIGT (ENSSGRG00000036300)	ENSSGRG00000036358	ppp1r3da (ENSSGRG00000036361)	ttll9 (ENSSGRG00000036362)	edn3b (ENSSGRG00000036363)	ENSSGRG00000036364	ENSSGRG00000036634	chl1a (ENSSGRG00000036715) #15	PDZRN3 (ENSSGRG00000036906) #18	ppp4r2a (ENSSGRG00000036989)	rybpa (ENSSGRG00000036993) #22	eif4e3 (ENSSGRG00000036994) #25	foxp1a (ENSSGRG00000037006)	ENSSGRG00000037143	eif4ba (ENSSGRG00000037203)	ENSSGRG00000037288	krt18a.1 (ENSSGRG00000037289)	krt8 (ENSSGRG00000037315)	zgc:171775 (ENSSGRG00000037390)	ENSSGRG00000037433	ENSSGRG00000039177	slc16a7 (ENSSGRG00000039179)	prkcbp1l (ENSSGRG00000039217)	mapre1b (ENSSGRG00000041902)	lama5 (ENSSGRG00000041912)	adrm1 (ENSSGRG00000041946)
Zebrafish	DUPLICATION
Zebrafish	MODERN SPECIES	21	tardbpb (ENSDARG00000040031)	cenps (ENSDARG00000070485)	rbp7b (ENSDARG00000070486)	H6PD (ENSDARG00000060153)	epha2a (ENSDARG00000017354)	rbm19 (ENSDARG00000042590)	cntn4 (ENSDARG00000098161)	ENSDARG00000112767	ENSDARG00000104277 ##11	ENSDARG00000103109	ENSDARG00000053454 ##11	pdzrn3b (ENSDARG00000073869) #18	ppp4r2b (ENSDARG00000053447)	gxylt2 (ENSDARG00000044191) #20	shq1 (ENSDARG00000058522) #21	rybpb (ENSDARG00000053459) #22	prok2 (ENSDARG00000091616)	gpr27 (ENSDARG00000006607) #24	foxp1b (ENSDARG00000014181)	mdfic2 (ENSDARG00000091832) #27	zgc:113054 (ENSDARG00000053483)	ENSDARG00000087873	mitfa (ENSDARG00000003732) #28	ENSDARG00000112918	arl6ip5a (ENSDARG00000077044) #16	trnt1 (ENSDARG00000075297) #9	FRMD4B (ENSDARG00000074599) #29	ENSDARG00000076797	lrrn1 (ENSDARG00000060115)	glyctk (ENSDARG00000060120)	tcta (ENSDARG00000044194)
Zebrafish	MODERN SPECIES	15	wfdc2 (ENSDARG00000089187)	PIGT (ENSDARG00000075842)	phactr3a (ENSDARG00000058243)	ENSDARG00000088950	ppp1r3da (ENSDARG00000077513)	ENSDARG00000088505	ttll9 (ENSDARG00000062806)	edn3b (ENSDARG00000086669)	ENSDARG00000113113	ENSDARG00000076364	ENSDARG00000062880	chl1a (ENSDARG00000077881) #15	ENSDARG00000013647	PDZRN3 (ENSDARG00000073757) #18	ppp4r2a (ENSDARG00000026540)	rybpa (ENSDARG00000037773) #22	eif4e3 (ENSDARG00000005078) #25	foxp1a (ENSDARG00000004843)	ENSDARG00000076292	eif4ba (ENSDARG00000017439)	krt18a.2 (ENSDARG00000058332)	krt18a.1 (ENSDARG00000018404)	krt8 (ENSDARG00000058358)	krt5 (ENSDARG00000058371)	zgc:171775 (ENSDARG00000058381)	ENSDARG00000075821	ENSDARG00000030262	slc16a7 (ENSDARG00000021573)	prkcbp1l (ENSDARG00000011932)	mapre1b (ENSDARG00000002659)	lama5 (ENSDARG00000058543)
Euteleosteomorpha	ANCESTRAL SPECIES	5	ENSGT00940000156091.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00940000165667	ENSGT01100000263545.a.b.c.a	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000167414	ENSGT00940000155198.B ##11	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b	ENSGT00730000111641.b #27	ENSGT00940000165309	ENSGT00390000011238	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00940000157154.d	ENSGT00940000162663	ENSGT00940000177280
Acanthomorphata	ANCESTRAL SPECIES	42	ENSGT00940000156091.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00940000165667	ENSGT01100000263545.a.b.c.a	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000167414	ENSGT00940000155198.B ##11	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b	ENSGT00730000111641.b #27	ENSGT00940000165309	ENSGT00390000011238	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00940000157154.d	ENSGT00940000162663	ENSGT00940000177280
Euacanthomorphacea	ANCESTRAL SPECIES	1	ENSGT00940000156091.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00940000165667	ENSGT01100000263545.a.b.c.a	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000167414	ENSGT00940000155198.B ##11	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b	ENSGT00730000111641.b #27	ENSGT00940000165309	ENSGT00390000011238	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00940000157154.d	ENSGT00940000162663	ENSGT00940000177280
Pinecone sodierfish	MODERN SPECIES	19	ift52 (ENSMMDG00005017450)	mybl2b (ENSMMDG00005017376)	rpn2 (ENSMMDG00005013613)	ghrh (ENSMMDG00005013568)	cdk5rap1 (ENSMMDG00005013347)	ENSMMDG00005013086	EPB41L1 (ENSMMDG00005011814)	cntn4 (ENSMMDG00005011797)	ENSMMDG00005011751	ENSMMDG00005010692	ENSMMDG00005009427 ##11	pdzrn3b (ENSMMDG00005009235) #18	ppp4r2b (ENSMMDG00005009228)	gxylt2 (ENSMMDG00005009227) #20	shq1 (ENSMMDG00005009217) #21	rybpa (ENSMMDG00005009204) #22	prok2 (ENSMMDG00005009188)	gpr27 (ENSMMDG00005009185) #24	EIF4E3 (ENSMMDG00005009182) #25	foxp1b (ENSMMDG00005009108)	zgc:113054 (ENSMMDG00005009107)	mitfa (ENSMMDG00005009103) #28	FRMD4B (ENSMMDG00005009095) #29	arl6ip5a (ENSMMDG00005009086) #16	trnt1 (ENSMMDG00005009082) #9	ENSMMDG00005009079	lrrn1 (ENSMMDG00005009074)	setmar (ENSMMDG00005009073)	ENSMMDG00005009072	ITPR1 (ENSMMDG00005009020)	bhlhe40 (ENSMMDG00005009011)
Percomorphaceae	ANCESTRAL SPECIES	1	ENSGT00940000156091.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00940000165667	ENSGT01100000263545.a.b.c.a	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000167414	ENSGT00940000155198.B ##11	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b	ENSGT00730000111641.b #27	ENSGT00940000165309	ENSGT00390000011238	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00940000157154.d	ENSGT00940000162663	ENSGT00940000177280
Tiger tail seahorse	MODERN SPECIES	280	mybl2b (ENSHCOG00000012656)	rpn2 (ENSHCOG00000012635)	ENSHCOG00000012590	cdk5rap1 (ENSHCOG00000012575)	ENSHCOG00000012529	ENSHCOG00000012516	ENSHCOG00000012484	EPB41L1 (ENSHCOG00000012467)	cntn4 (ENSHCOG00000012418)	ENSHCOG00000012171	ENSHCOG00000011365 ##11	pdzrn3b (ENSHCOG00000010837) #18	ppp4r2b (ENSHCOG00000010808)	gxylt2 (ENSHCOG00000010804) #20	shq1 (ENSHCOG00000010799) #21	RYBP (ENSHCOG00000010777) #22	prok2 (ENSHCOG00000010773)	EIF4E3 (ENSHCOG00000010757) #25	ENSHCOG00000010745	foxp1b (ENSHCOG00000010731)	mitfa (ENSHCOG00000010705) #28	FRMD4B (ENSHCOG00000010682) #29	arl6ip5a (ENSHCOG00000010626) #16	trnt1 (ENSHCOG00000010618) #9	lrrn1 (ENSHCOG00000010606)	setmar (ENSHCOG00000010603)	ENSHCOG00000010596	ITPR1 (ENSHCOG00000010574)	ENSHCOG00000000326	bhlhe40 (ENSHCOG00000010486)	ENSHCOG00000010474
Percomorphaceae_B	ANCESTRAL SPECIES	3	ENSGT00940000156091.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00940000165667	ENSGT01100000263545.a.b.c.a	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000167414	ENSGT00940000155198.B ##11	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b	ENSGT00730000111641.b #27	ENSGT00940000165309	ENSGT00390000011238	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00940000157154.d	ENSGT00940000162663	ENSGT00940000177280
Ovalentaria	ANCESTRAL SPECIES	2	ENSGT00940000156091.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00940000165667	ENSGT01100000263545.a.b.c.a	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000167414	ENSGT00940000155198.B ##11	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b	ENSGT00730000111641.b #27	ENSGT00940000165309	ENSGT00390000011238	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00940000157154.d	ENSGT00940000162663	ENSGT00940000177280
Ovalentaria_B	ANCESTRAL SPECIES	5	ENSGT00940000156091.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00940000165667	ENSGT01100000263545.a.b.c.a	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000167414	ENSGT00940000155198.B ##11	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b	ENSGT00730000111641.b #27	ENSGT00940000165309	ENSGT00390000011238	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00940000157154.d	ENSGT00940000162663	ENSGT00940000155071.C
Pomacentridae	ANCESTRAL SPECIES	33	ENSGT00950000183154.b.b	ENSGT00940000165667	ENSGT01100000263545.a.b.c.a	ENSGT00620000088018	ENSGT00940000175705	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000167414	ENSGT00940000155198.B ##11	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b	ENSGT00940000165309	ENSGT00390000011238	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00940000157154.d	ENSGT00940000162663	ENSGT00940000155071.C	ENSGT00940000181580
Bicolor damselfish	MODERN SPECIES	2272																rybpa (ENSSPAG00000004173) #22
Pomacentridae_A	ANCESTRAL SPECIES	2	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00940000165667	ENSGT01100000263545.a.b.c.a	ENSGT00620000088018	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000167414	ENSGT00940000155198.B ##11	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b	ENSGT00940000165309	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00940000157154.d	ENSGT00940000162663	ENSGT00940000155071.C	ENSGT00940000181580	ENSGT00940000158384.d
Amphiprion	ANCESTRAL SPECIES	38	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00940000165667	ENSGT01100000263545.a.b.c.a	ENSGT00620000088018	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000167414	ENSGT00940000155198.B ##11	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b	ENSGT00940000165309	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00940000157154.d	ENSGT00940000162663	ENSGT00940000155071.C	ENSGT00940000181580	ENSGT00940000158384.d
Clown anemonefish	MODERN SPECIES	3418	ENSAOCG00000001653	ENSAOCG00000022932	knstrn (ENSAOCG00000022946)	ENSAOCG00000022958	mtif3 (ENSAOCG00000022968)	heca (ENSAOCG00000022989)	abracl (ENSAOCG00000022998)	reps1 (ENSAOCG00000023064)	clu (ENSAOCG00000001667)	ENSAOCG00000023113	ak7a (ENSAOCG00000001676)	pdzrn3b (ENSAOCG00000023264) #18	ppp4r2b (ENSAOCG00000023285)	gxylt2 (ENSAOCG00000023295) #20	shq1 (ENSAOCG00000023311) #21	rybpa (ENSAOCG00000001679) #22
Orange clownfish	MODERN SPECIES	20	rpn2 (ENSAPEG00000020940)	ghrh (ENSAPEG00000021042)	cdk5rap1 (ENSAPEG00000021049)	ENSAPEG00000021075	CFAP57 (ENSAPEG00000021147)	EPB41L1 (ENSAPEG00000021204)	cntn4 (ENSAPEG00000021259)	ENSAPEG00000021312	ENSAPEG00000021335 ##11	ENSAPEG00000021372	ENSAPEG00000021462 ##11	pdzrn3b (ENSAPEG00000021602) #18	ppp4r2b (ENSAPEG00000021643)	gxylt2 (ENSAPEG00000021661) #20	shq1 (ENSAPEG00000021686) #21	rybpa (ENSAPEG00000021704) #22	prok2 (ENSAPEG00000021745)	gpr27 (ENSAPEG00000021757) #24	EIF4E3 (ENSAPEG00000021766) #25	foxp1b (ENSAPEG00000021804)	zgc:113054 (ENSAPEG00000021963)	mitfa (ENSAPEG00000022061) #28	FRMD4B (ENSAPEG00000022527) #29	arl6ip5a (ENSAPEG00000022602) #16	trnt1 (ENSAPEG00000022627) #9	ENSAPEG00000022640	lrrn1 (ENSAPEG00000022732)	setmar (ENSAPEG00000022737)	ITPR1 (ENSAPEG00000022750)	ENSAPEG00000022812	bhlhe40 (ENSAPEG00000022818)
Spiny chromis	MODERN SPECIES	5										ENSAPOG00000014540	ENSAPOG00000014475 ##11	pdzrn3b (ENSAPOG00000014464) #18	ppp4r2b (ENSAPOG00000014386)	gxylt2 (ENSAPOG00000014376) #20	shq1 (ENSAPOG00000000397) #21	rybpa (ENSAPOG00000014342) #22	prok2 (ENSAPOG00000014310)	gpr27 (ENSAPOG00000014287) #24	EIF4E3 (ENSAPOG00000014276) #25	foxp1b (ENSAPOG00000014209)	zgc:113054 (ENSAPOG00000013829)	mitfa (ENSAPOG00000013777) #28	FRMD4B (ENSAPOG00000013741) #29	arl6ip5a (ENSAPOG00000013701) #16	trnt1 (ENSAPOG00000013687) #9	ENSAPOG00000013653	lrrn1 (ENSAPOG00000013646)	setmar (ENSAPOG00000013638)	ITPR1 (ENSAPOG00000013619)	bhlhe40 (ENSAPOG00000013386)	NAAA (ENSAPOG00000013354)
Cichlidae	ANCESTRAL SPECIES	1	ENSGT00940000156091.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00940000165667	ENSGT01100000263545.a.b.c.a	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000167414	ENSGT00940000155198.B ##11	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b	ENSGT00730000111641.b #27	ENSGT00940000165309	ENSGT00390000011238	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00940000157154.d	ENSGT00940000162663	ENSGT00940000155071.C
Pseudocrenilabrinae	ANCESTRAL SPECIES	4	ENSGT00950000183154.b.b	ENSGT00940000165667	ENSGT01100000263545.a.b.c.a.l	ENSGT00940000160361	ENSGT01100000263545.a.b.c.a.k	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000167414	ENSGT00940000155198.B ##11	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b	ENSGT00730000111641.b #27	ENSGT00940000165309	ENSGT00390000011238	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00940000157154.d	ENSGT00940000162663	ENSGT00940000155071.C
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	2	ENSGT00950000183154.b.b	ENSGT00940000165667	ENSGT01100000263545.a.b.c.a.l	ENSGT00940000175704	ENSGT01100000263545.a.b.c.a.k	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000167414	ENSGT00940000155198.B ##11	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b	ENSGT00730000111641.b #27	ENSGT00940000165309	ENSGT00390000011238	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00940000157154.d	ENSGT00940000162663	ENSGT00940000155071.C
Haplochromini	ANCESTRAL SPECIES	1	ENSGT00950000183154.b.b	ENSGT00940000165667	ENSGT01100000263545.a.b.c.a.l	ENSGT00940000175704	ENSGT01100000263545.a.b.c.a.k	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000167414	ENSGT00940000155198.B ##11	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b	ENSGT00730000111641.b #27	ENSGT00940000165309	ENSGT00390000011238	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00940000157154.d	ENSGT00940000162663	ENSGT00940000155071.C
Haplochromini_A	ANCESTRAL SPECIES		ENSGT00950000183154.b.b	ENSGT00940000165667	ENSGT01100000263545.a.b.c.a.l	ENSGT00940000175704	ENSGT01100000263545.a.b.c.a.k	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000167414	ENSGT00940000155198.B ##11	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b	ENSGT00730000111641.b #27	ENSGT00940000165309	ENSGT00390000011238	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00940000157154.d	ENSGT00940000162663	ENSGT00940000155071.C
P. nyererei	MODERN SPECIES	316	rpn2 (ENSPNYG00000004696)	ghrh (ENSPNYG00000004654)	cdk5rap1 (ENSPNYG00000004624)	ENSPNYG00000004612	ENSPNYG00000004567	EPB41L1 (ENSPNYG00000004526)	cntn4 (ENSPNYG00000004297)	ENSPNYG00000004264	ENSPNYG00000004242 ##11	ENSPNYG00000004096	ENSPNYG00000004028 ##11	pdzrn3b (ENSPNYG00000003966) #18	ppp4r2b (ENSPNYG00000003934)	gxylt2 (ENSPNYG00000003893) #20	shq1 (ENSPNYG00000003878) #21	rybpa (ENSPNYG00000003852) #22	prok2 (ENSPNYG00000003818)	gpr27 (ENSPNYG00000003739) #24	EIF4E3 (ENSPNYG00000003711) #25	foxp1b (ENSPNYG00000003448)	mdfic2 (ENSPNYG00000003404) #27	zgc:113054 (ENSPNYG00000003372)	mitfa (ENSPNYG00000003348) #28	FRMD4B (ENSPNYG00000003194) #29	arl6ip5a (ENSPNYG00000003159) #16	trnt1 (ENSPNYG00000003120) #9	ENSPNYG00000003083	lrrn1 (ENSPNYG00000003065)	setmar (ENSPNYG00000003058)	ITPR1 (ENSPNYG00000002900)	bhlhe40 (ENSPNYG00000002765)
Haplochromini_B	ANCESTRAL SPECIES		ENSGT00940000160361	ENSGT00940000165667	ENSGT01100000263545.a.b.c.a.l	ENSGT00940000175704	ENSGT01100000263545.a.b.c.a.k	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000167414	ENSGT00940000155198.B ##11	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b	ENSGT00730000111641.b #27	ENSGT00940000165309	ENSGT00390000011238	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00940000157154.d	ENSGT00940000162663	ENSGT00940000155071.C
Eastern happy	MODERN SPECIES	17	ENSACLG00000023836	cdk5rap1 (ENSACLG00000023797)	ENSACLG00000023768	ENSACLG00000023732	ENSACLG00000023622	ENSACLG00000023605	cntn4 (ENSACLG00000023580)	ENSACLG00000023449	ENSACLG00000023351	ENSACLG00000023336	ENSACLG00000023317 ##11	pdzrn3b (ENSACLG00000023265) #18	ppp4r2b (ENSACLG00000023118)	gxylt2 (ENSACLG00000023097) #20	shq1 (ENSACLG00000023077) #21	rybpa (ENSACLG00000023062) #22	prok2 (ENSACLG00000023039)	gpr27 (ENSACLG00000023012) #24	EIF4E3 (ENSACLG00000022985) #25	foxp1b (ENSACLG00000022616)	mdfic2 (ENSACLG00000022587) #27	zgc:113054 (ENSACLG00000022547)	ENSACLG00000022536	mitfa (ENSACLG00000022427) #28	FRMD4B (ENSACLG00000022299) #29	arl6ip5a (ENSACLG00000022278) #16	trnt1 (ENSACLG00000022227) #9	ENSACLG00000022206	ENSACLG00000022197	lrrn1 (ENSACLG00000022186)	setmar (ENSACLG00000022175)
Zebra mbuna	MODERN SPECIES	1108	ENSMZEG00005008130	ENSMZEG00005008141	ENSMZEG00005008163	ENSMZEG00005008183	ENSMZEG00005008203	ENSMZEG00005008262	cntn4 (ENSMZEG00005008333)	ENSMZEG00005008380	ENSMZEG00005008392 ##11	ENSMZEG00005008437	ENSMZEG00005008531 ##11	pdzrn3b (ENSMZEG00005008554) #18	ppp4r2b (ENSMZEG00005008591)	gxylt2 (ENSMZEG00005008602) #20	shq1 (ENSMZEG00005008649) #21	rybpa (ENSMZEG00005008698) #22	prok2 (ENSMZEG00005008722)	gpr27 (ENSMZEG00005008748) #24	EIF4E3 (ENSMZEG00005008767) #25	foxp1b (ENSMZEG00005008804)	mdfic2 (ENSMZEG00005008892) #27	zgc:113054 (ENSMZEG00005008911)	mitfa (ENSMZEG00005008959) #28	FRMD4B (ENSMZEG00005009091) #29	arl6ip5a (ENSMZEG00005009134) #16	trnt1 (ENSMZEG00005009141) #9	ENSMZEG00005009157	lrrn1 (ENSMZEG00005009199)	setmar (ENSMZEG00005009204)	ITPR1 (ENSMZEG00005009223)	bhlhe40 (ENSMZEG00005009312)
Burton s mouthbrooder	MODERN SPECIES	663												pdzrn3b (ENSHBUG00000010947) #18	ppp4r2b (ENSHBUG00000010890)	gxylt2 (ENSHBUG00000010881) #20	shq1 (ENSHBUG00000010857) #21	rybpa (ENSHBUG00000010844) #22	prok2 (ENSHBUG00000010821)	gpr27 (ENSHBUG00000010817) #24	EIF4E3 (ENSHBUG00000010777) #25	foxp1b (ENSHBUG00000010722)	mdfic2 (ENSHBUG00000010521) #27	zgc:113054 (ENSHBUG00000010512)
Lyretail cichlid	MODERN SPECIES	296	cdk5rap1 (ENSNBRG00000000859)	ENSNBRG00000000837	ENSNBRG00000000783	EPB41L1 (ENSNBRG00000000718)	cntn4 (ENSNBRG00000000641)	ENSNBRG00000000613	ENSNBRG00000000584 ##11	ENSNBRG00000000316	ENSNBRG00000000266 ##11	ENSNBRG00000000246	pdzrn3b (ENSNBRG00000000238) #18	ENSNBRG00000000227	gxylt2 (ENSNBRG00000024016) #20	ENSNBRG00000024008	shq1 (ENSNBRG00000024004) #21	rybpa (ENSNBRG00000023999) #22	prok2 (ENSNBRG00000023996)	gpr27 (ENSNBRG00000023989) #24	EIF4E3 (ENSNBRG00000023984) #25	foxp1b (ENSNBRG00000023949)	zgc:113054 (ENSNBRG00000023930)	ENSNBRG00000023889	mitfa (ENSNBRG00000023738) #28	FRMD4B (ENSNBRG00000023651) #29	arl6ip5a (ENSNBRG00000023616) #16	trnt1 (ENSNBRG00000023606) #9	ENSNBRG00000023604	lrrn1 (ENSNBRG00000023596)	setmar (ENSNBRG00000023590)	ITPR1 (ENSNBRG00000023567)	BHLHE40 (ENSNBRG00000023554)
Nile tilapia	MODERN SPECIES	17	rpn2 (ENSONIG00000020251)	ENSONIG00000020252	CDK5RAP1 (ENSONIG00000020253)	ENSONIG00000020254	ENSONIG00000020256	ENSONIG00000033511	cntn4 (ENSONIG00000020257)	ENSONIG00000020258	ENSONIG00000020259	ENSONIG00000020260 ##11	pdzrn3b (ENSONIG00000020261) #18	ppp4r2 (ENSONIG00000031128)	gxylt2 (ENSONIG00000020263) #20	shq1 (ENSONIG00000020264) #21	ENSONIG00000030779	rybpa (ENSONIG00000020265) #22	prok2 (ENSONIG00000030565)	gpr27 (ENSONIG00000040990) #24	EIF4E3 (ENSONIG00000020266) #25	foxp1b (ENSONIG00000020267)	mdfic2 (ENSONIG00000035668) #27	zgc:113054 (ENSONIG00000020268)	ddx4 (ENSONIG00000030953)	ENSONIG00000041875	mitfa (ENSONIG00000020270) #28	FRMD4B (ENSONIG00000020271) #29	arl6ip5a (ENSONIG00000029243) #16	trnt1 (ENSONIG00000020273) #9	ENSONIG00000020274	lrrn1 (ENSONIG00000020810)	setmar (ENSONIG00000020275)
Midas cichlid	MODERN SPECIES	319	rpn2 (ENSACIG00000020345)	ghrh (ENSACIG00000020367)	cdk5rap1 (ENSACIG00000020401)	ENSACIG00000020448	EPB41L1 (ENSACIG00000020487)	ENSACIG00000020791	cntn4 (ENSACIG00000020823)	ENSACIG00000021005	ENSACIG00000021023 ##11	ENSACIG00000021051	ENSACIG00000021148 ##11	pdzrn3b (ENSACIG00000021190) #18	ENSACIG00000021216	gxylt2 (ENSACIG00000021226) #20	shq1 (ENSACIG00000021249) #21	rybpa (ENSACIG00000021280) #22	prok2 (ENSACIG00000021289)	gpr27 (ENSACIG00000021306) #24	EIF4E3 (ENSACIG00000021312) #25	foxp1b (ENSACIG00000021338)	mdfic2 (ENSACIG00000021414) #27	zgc:113054 (ENSACIG00000021422)	ENSACIG00000021447	ENSACIG00000021462	mitfa (ENSACIG00000021479) #28	FRMD4B (ENSACIG00000021534) #29	arl6ip5a (ENSACIG00000021665) #16	trnt1 (ENSACIG00000021706) #9	ENSACIG00000021720	lrrn1 (ENSACIG00000021735)
Atherinomorphae	ANCESTRAL SPECIES	2	ENSGT00940000156091.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00940000165667	ENSGT01100000263545.a.b.c.a	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000167414	ENSGT00940000155198.B ##11	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b	ENSGT00940000178117	ENSGT00940000165309	ENSGT00390000011238	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00940000157154.d	ENSGT00940000162663	ENSGT00940000177280
Oryzias	ANCESTRAL SPECIES	1	ENSGT00390000011581	ENSGT00940000156091.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00940000165667	ENSGT01100000263545.a.b.c.a	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000167414	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00940000155865.c.b #25	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.b.a	ENSGT00970000193381.b	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00940000158955	ENSGT00940000156616.i
Oryzias_b	ANCESTRAL SPECIES	3	ENSGT00940000156091.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00940000169850	ENSGT00940000165667	ENSGT01100000263545.a.b.c.a	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000167414	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00940000155865.c.b #25	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.b.a	ENSGT00970000193381.b	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00940000158955	ENSGT00940000156616.i
Javanese ricefish	DUPLICATION
Javanese ricefish	MODERN SPECIES	19	acot8 (ENSOJAG00000020331)	ift52 (ENSOJAG00000020357)	mybl2b (ENSOJAG00000020440)	rpn2 (ENSOJAG00000020530)	ENSOJAG00000020889	ENSOJAG00000020981	ENSOJAG00000021073	cntn4 (ENSOJAG00000021484)	ENSOJAG00000022411	ENSOJAG00000023350	ENSOJAG00000023757 ##11	pdzrn3b (ENSOJAG00000023854) #18	ppp4r2b (ENSOJAG00000023860)	gxylt2 (ENSOJAG00000003792) #20	shq1 (ENSOJAG00000003807) #21	ENSOJAG00000003841 #22	RYBP (ENSOJAG00000003861) #22	prok2 (ENSOJAG00000003872)	EIF4E3 (ENSOJAG00000003890) #25	dag1 (ENSOJAG00000003940)	ENSOJAG00000003948	nicn1 (ENSOJAG00000003956)	ENSOJAG00000003991	GRM7 (ENSOJAG00000004119)	ENSOJAG00000004517	ENSOJAG00000004546	RNF123 (ENSOJAG00000004657)	AMIGO3 (ENSOJAG00000006140)	aldh4a1 (ENSOJAG00000006168)	ENSOJAG00000007046	ENSOJAG00000007081
Javanese ricefish	MODERN SPECIES	19	ift52 (ENSOJAG00000020357)	mybl2b (ENSOJAG00000020440)	rpn2 (ENSOJAG00000020530)	ENSOJAG00000020889	ENSOJAG00000020981	ENSOJAG00000021073	cntn4 (ENSOJAG00000021484)	ENSOJAG00000022411	ENSOJAG00000023350	ENSOJAG00000023757 ##11	pdzrn3b (ENSOJAG00000023854) #18	ppp4r2b (ENSOJAG00000023860)	gxylt2 (ENSOJAG00000003792) #20	shq1 (ENSOJAG00000003807) #21	ENSOJAG00000003841 #22	RYBP (ENSOJAG00000003861) #22	prok2 (ENSOJAG00000003872)	EIF4E3 (ENSOJAG00000003890) #25	dag1 (ENSOJAG00000003940)	ENSOJAG00000003948	nicn1 (ENSOJAG00000003956)	ENSOJAG00000003991	GRM7 (ENSOJAG00000004119)	ENSOJAG00000004517	ENSOJAG00000004546	RNF123 (ENSOJAG00000004657)	AMIGO3 (ENSOJAG00000006140)	aldh4a1 (ENSOJAG00000006168)	ENSOJAG00000007046	ENSOJAG00000007081	PIK3C2B (ENSOJAG00000007235)
Indian medaka	MODERN SPECIES	8	ift52 (ENSOMEG00000001125)	mybl2b (ENSOMEG00000001127)	rpn2 (ENSOMEG00000001134)	ENSOMEG00000001139	cdk5rap1 (ENSOMEG00000001144)	ENSOMEG00000001148	ENSOMEG00000001158	cntn4 (ENSOMEG00000001171)	ENSOMEG00000001186	ENSOMEG00000001197	ENSOMEG00000001211 ##11	pdzrn3b (ENSOMEG00000001216) #18	ppp4r2b (ENSOMEG00000001220)	gxylt2 (ENSOMEG00000001223) #20	shq1 (ENSOMEG00000001225) #21	RYBP (ENSOMEG00000001230) #22	prok2 (ENSOMEG00000001233)	EIF4E3 (ENSOMEG00000001240) #25	ENSOMEG00000001245	dag1 (ENSOMEG00000001249)	nicn1 (ENSOMEG00000001258)	GRM7 (ENSOMEG00000001268)	ENSOMEG00000001272	ENSOMEG00000001275	AMIGO3 (ENSOMEG00000001277)	ENSOMEG00000001281	ENSOMEG00000001284	aldh4a1 (ENSOMEG00000001286)	ENSOMEG00000001289	ENSOMEG00000001290	PIK3C2B (ENSOMEG00000001301)
Oryzias_a	ANCESTRAL SPECIES	5	ENSGT00390000011581	ENSGT00940000156091.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00940000165667	ENSGT01100000263545.a.b.c.a	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000167414	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000158065 #20	ENSGT00940000162859.o	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00940000155865.c.b #25	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a	ENSGT00970000193381.a.a.a.a.b.a	ENSGT00970000193381.b	ENSGT00950000183146.b.b	ENSGT00940000155781	ENSGT00560000077335	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00940000158955	ENSGT00940000156616.i
Japanese Medaka HdrR	MODERN SPECIES	19	cdk5rap1 (ENSORLG00000011531)	ENSORLG00000011457	ENSORLG00000011409	ENSORLG00000028932	cntn4 (ENSORLG00000011392)	ENSORLG00000025901	ENSORLG00000011363	ENSORLG00000011220	ENSORLG00000029566	ENSORLG00000027420	ENSORLG00000011105 ##11	pdzrn3b (ENSORLG00000011027) #18	gxylt2 (ENSORLG00000011004) #20	ppp4r2b (ENSORLG00000010996)	shq1 (ENSORLG00000023538) #21	rybpa (ENSORLG00000030260) #22	prok2 (ENSORLG00000026685)	EIF4E3 (ENSORLG00000010970) #25	dag1 (ENSORLG00000010935)	ENSORLG00000024220	nicn1 (ENSORLG00000010901)	ENSORLG00000030265	ENSORLG00000010879	ENSORLG00000028895	ENSORLG00000010874	ENSORLG00000023877	AMIGO3 (ENSORLG00000010862)	RNF123 (ENSORLG00000010855)	aldh4a1 (ENSORLG00000010810)	ENSORLG00000010785	ENSORLG00000028258
Chinese medaka	DUPLICATION
Chinese medaka	MODERN SPECIES	3896																ENSOSIG00000003492 #22
Chinese medaka	MODERN SPECIES	509	ift52 (ENSOSIG00000011007)	mybl2b (ENSOSIG00000011009)	rpn2 (ENSOSIG00000011016)	ENSOSIG00000011226	cdk5rap1 (ENSOSIG00000011235)	ENSOSIG00000012565	ENSOSIG00000012682	ENSOSIG00000015731	cntn4 (ENSOSIG00000015750)	ENSOSIG00000016408	ENSOSIG00000017212	ENSOSIG00000019465 ##11	pdzrn3b (ENSOSIG00000021186) #18	gxylt2 (ENSOSIG00000021195) #20	shq1 (ENSOSIG00000021198) #21	ENSOSIG00000021199 #22	prok2 (ENSOSIG00000021200)	EIF4E3 (ENSOSIG00000021202) #25	dag1 (ENSOSIG00000021204)
Cyprinodontiformes	ANCESTRAL SPECIES	2	ENSGT00940000156091.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00940000165667	ENSGT01100000263545.a.b.c.a	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000167414	ENSGT00940000155198.B ##11	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b	ENSGT00940000178117	ENSGT00940000165309	ENSGT00390000011238	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00940000157154.d	ENSGT00940000162663	ENSGT00940000155071.C
Aplocheiloidei	ANCESTRAL SPECIES	94	ENSGT00390000011581	ENSGT00940000156091.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00940000165667	ENSGT01100000263545.a.b.c.a	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000167414	ENSGT00940000165371.a	ENSGT00940000155198.A.g ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b	ENSGT00940000165309	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a
Mangrove rivulus	MODERN SPECIES	97			ENSKMAG00000005091	ENSKMAG00000005009	cntn4 (ENSKMAG00000004922)	ENSKMAG00000004905	ENSKMAG00000004874	ENSKMAG00000004851	ENSKMAG00000004717	CNTN4 (ENSKMAG00000004605) ##11	pdzrn3b (ENSKMAG00000004548) #18	ppp4r2b (ENSKMAG00000004516)	gxylt2 (ENSKMAG00000004483) #20	shq1 (ENSKMAG00000004457) #21	ENSKMAG00000004437	rybpa (ENSKMAG00000004423) #22	prok2 (ENSKMAG00000004402)	gpr27 (ENSKMAG00000004375) #24	EIF4E3 (ENSKMAG00000004316) #25
Turquoise killifish	MODERN SPECIES	1619	ENSNFUG00015007844	ENSNFUG00015007838	ENSNFUG00015007836	CABZ01012080.1 (ENSNFUG00015007569) ##11	ENSNFUG00015007504	ENSNFUG00015007499	ENSNFUG00015007495	pdzrn3b (ENSNFUG00015007455) #18	ENSNFUG00015007448	ENSNFUG00015007444	ENSNFUG00015007441	ppp4r2b (ENSNFUG00015007437)	GXYLT2 (ENSNFUG00015007433) #20	ENSNFUG00015007428	SHQ1 (ENSNFUG00015007416) #21	RYBP (ENSNFUG00015007410) #22	prok2 (ENSNFUG00015007407)	ENSNFUG00015007405	EIF4E3 (ENSNFUG00015007400) #25	ENSNFUG00015007395	foxp1b (ENSNFUG00015007381)	zgc:113054 (ENSNFUG00015007370)	mitfa (ENSNFUG00015007344) #28	ENSNFUG00015007330	FRMD4B (ENSNFUG00015007246) #29	ARL6IP5A (ENSNFUG00015007225) #16	TRNT1 (ENSNFUG00015007219) #9	ENSNFUG00015007215	LRRN1 (ENSNFUG00015007213)	ENSNFUG00015007210	ENSNFUG00015007209
Cyprinodontoidei	ANCESTRAL SPECIES	4	ENSGT00940000156091.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00940000165667	ENSGT01100000263545.a.b.c.a	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000167414	ENSGT00940000155198.B ##11	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b	ENSGT00940000178117	ENSGT00940000165309	ENSGT00390000011238	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00940000175464	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00970000193381.a.a.a.a.a.a.a.d	ENSGT00940000157154.d
NAME_4	ANCESTRAL SPECIES	63	ENSGT00940000156091.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00940000165667	ENSGT01100000263545.a.b.c.a	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000167414	ENSGT00940000155198.B ##11	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b	ENSGT00940000165309	ENSGT00390000011238	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00940000175464	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00970000193381.a.a.a.a.a.a.a.d	ENSGT00940000157154.d	ENSGT00940000162663
Sheepshead minnow	MODERN SPECIES	163										ENSCVAG00000020246	ENSCVAG00000020182 ##11	pdzrn3b (ENSCVAG00000020100) #18	ppp4r2b (ENSCVAG00000020063)	gxylt2 (ENSCVAG00000020052) #20	shq1 (ENSCVAG00000020049) #21	rybpa (ENSCVAG00000020045) #22	prok2 (ENSCVAG00000020024)	gpr27 (ENSCVAG00000020011) #24	ENSCVAG00000020009	EIF4E3 (ENSCVAG00000020000) #25	foxp1b (ENSCVAG00000019977)	zgc:113054 (ENSCVAG00000019960)	ENSCVAG00000019895	mitfa (ENSCVAG00000019875) #28	FRMD4B (ENSCVAG00000019832) #29	arl6ip5a (ENSCVAG00000019799) #16	ENSCVAG00000019782	trnt1 (ENSCVAG00000019770) #9	ENSCVAG00000019761	ENSCVAG00000019734	ENSCVAG00000019729
Mummichog	MODERN SPECIES	313	mybl2b (ENSFHEG00000017018)	rpn2 (ENSFHEG00000017125)	ENSFHEG00000017137	cdk5rap1 (ENSFHEG00000017181)	ENSFHEG00000017248	EPB41L1 (ENSFHEG00000017266)	cntn4 (ENSFHEG00000017318)	ENSFHEG00000017343 ##11	ENSFHEG00000017387 ##11	ENSFHEG00000017415	ENSFHEG00000017494 ##11	pdzrn3b (ENSFHEG00000017519) #18	ppp4r2b (ENSFHEG00000017528)	gxylt2 (ENSFHEG00000017536) #20	shq1 (ENSFHEG00000017552) #21	rybpa (ENSFHEG00000017560) #22	prok2 (ENSFHEG00000017583)	gpr27 (ENSFHEG00000017617) #24	EIF4E3 (ENSFHEG00000017632) #25	foxp1b (ENSFHEG00000017865)	zgc:113054 (ENSFHEG00000017918)	ENSFHEG00000017933	mitfa (ENSFHEG00000019131) #28	ENSFHEG00000019182	FRMD4B (ENSFHEG00000019218) #29	arl6ip5a (ENSFHEG00000019240) #16	ENSFHEG00000019257	trnt1 (ENSFHEG00000019294) #9	ENSFHEG00000019322	ENSFHEG00000019332	lrrn1 (ENSFHEG00000019336)
Poeciliinae	ANCESTRAL SPECIES	4	ENSGT00940000156091.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00940000165667	ENSGT01100000263545.a.b.c.a	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000167414	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00940000177762	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00890000139436.A.a #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b	ENSGT00940000178117	ENSGT00940000165309
Platyfish	MODERN SPECIES	12	ift52 (ENSXMAG00000009491)	mybl2b (ENSXMAG00000007939)	rpn2 (ENSXMAG00000007919)	ENSXMAG00000007917	ENSXMAG00000006111	cdk5rap1 (ENSXMAG00000007903)	ENSXMAG00000025010	cntn4 (ENSXMAG00000005772)	ENSXMAG00000005795	ENSXMAG00000017082	ENSXMAG00000005896 ##11	pdzrn3b (ENSXMAG00000004695) #18	ppp4r2b (ENSXMAG00000004727)	gxylt2 (ENSXMAG00000004758) #20	ENSXMAG00000025660	rybpa (ENSXMAG00000027089) #22	gpr27 (ENSXMAG00000020236) #24	EIF4E3 (ENSXMAG00000002188) #25	foxp1b (ENSXMAG00000004164)	ENSXMAG00000025053	zgc:113054 (ENSXMAG00000028801)
Poecilia	ANCESTRAL SPECIES	112											ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00940000154917.ab	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00890000139436.A.a #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b	ENSGT00940000178117	ENSGT00940000165309
Guppy	MODERN SPECIES	457	sulf2a (ENSPREG00000022391)	id1 (ENSPREG00000022414)	NCOA3 (ENSPREG00000022421)	KLHL10 (ENSPREG00000022434)	ENSPREG00000022442	ogfr2 (ENSPREG00000022446)	ENSPREG00000022458	ZMYND8 (ENSPREG00000022470)	eno1b (ENSPREG00000022481)	pdzrn3b (ENSPREG00000022505) #18	ppp4r2b (ENSPREG00000022528)	gxylt2 (ENSPREG00000022537) #20	ENSPREG00000022542	NFYB (ENSPREG00000022546)	shq1 (ENSPREG00000000591) #21	rybpa (ENSPREG00000000603) #22	gpr27 (ENSPREG00000000634) #24	EIF4E3 (ENSPREG00000000653) #25	foxp1b (ENSPREG00000000697)	ENSPREG00000000721	zgc:113054 (ENSPREG00000000737)	ENSPREG00000000756	ENSPREG00000000802	ENSPREG00000001053	ENSPREG00000001057
NAME_6	ANCESTRAL SPECIES																	ENSGT00390000013995.b.a #22
Amazon molly	MODERN SPECIES	878																rybpa (ENSPFOG00000000577) #22
Sailfin molly	DUPLICATION
Sailfin molly	MODERN SPECIES	3378																RYBP (ENSPLAG00000019677) #22
Sailfin molly	DUPLICATION
Sailfin molly	MODERN SPECIES	4050																ENSPLAG00000004436 #22
Sailfin molly	MODERN SPECIES	4057																ENSPLAG00000004326 #22
Percomorphaceae_C	ANCESTRAL SPECIES	1	ENSGT00940000156091.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00940000165667	ENSGT01100000263545.a.b.c.a	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000167414.f	ENSGT00940000155198.B ##11	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b	ENSGT00730000111641.b #27	ENSGT00940000165309	ENSGT00390000011238	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00940000157154.d	ENSGT00940000162663	ENSGT00940000155071.C
Percomorphaceae_D	ANCESTRAL SPECIES	3	ENSGT00940000156091.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00940000165667	ENSGT01100000263545.a.b.c.a	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000167414.f	ENSGT00940000155198.B ##11	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b	ENSGT00730000111641.b #27	ENSGT00940000165309	ENSGT00390000011238	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00940000157154.d	ENSGT00940000162663	ENSGT00940000155071.C
Anabantaria	ANCESTRAL SPECIES		ENSGT00390000011581	ENSGT00940000156091.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00940000165667	ENSGT01100000263545.a.b.c.a	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000167414.f	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b	ENSGT00940000165309	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00940000157154.d	ENSGT00940000162663	ENSGT00940000155071.C	ENSGT00940000181580	ENSGT00940000158384.d
Anabantoidei	ANCESTRAL SPECIES	1	ENSGT00390000011581	ENSGT00940000156091.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00940000165667	ENSGT01100000263545.a.b.c.a	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000167414.f	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b	ENSGT00940000165309	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00940000157154.d	ENSGT00940000162663	ENSGT00940000155071.C	ENSGT00940000158384.d	ENSGT00530000063548.A
Climbing perch	MODERN SPECIES	18	mybl2b (ENSATEG00000007465)	ENSATEG00000007486	ENSATEG00000007532	ENSATEG00000007641	ENSATEG00000007619	ENSATEG00000007665	cntn4 (ENSATEG00000007710)	ENSATEG00000008133	ENSATEG00000008177	ENSATEG00000008222 ##11	ENSATEG00000025437	pdzrn3b (ENSATEG00000008337) #18	ppp4r2b (ENSATEG00000008426)	gxylt2 (ENSATEG00000008453) #20	shq1 (ENSATEG00000008475) #21	RYBP (ENSATEG00000029830) #22	prok2 (ENSATEG00000008492)	gpr27 (ENSATEG00000008522) #24	EIF4E3 (ENSATEG00000008530) #25	foxp1b (ENSATEG00000008561)	zgc:113054 (ENSATEG00000008721)	zgc:113054 (ENSATEG00000008772)	mitfa (ENSATEG00000008837) #28	FRMD4B (ENSATEG00000008872) #29	arl6ip5a (ENSATEG00000008916) #16	trnt1 (ENSATEG00000008928) #9	ENSATEG00000008955	lrrn1 (ENSATEG00000008988)	setmar (ENSATEG00000008998)	ITPR1 (ENSATEG00000009014)	bhlhe40 (ENSATEG00000009176)
Siamese fighting fish	MODERN SPECIES	16	ENSBSLG00000026320	ENSBSLG00000026306	acot8 (ENSBSLG00000026304)	mybl2b (ENSBSLG00000026297)	rpn2 (ENSBSLG00000026247)	ENSBSLG00000026226	cdk5rap1 (ENSBSLG00000026216)	ENSBSLG00000026064	cntn4 (ENSBSLG00000025556)	ENSBSLG00000023123	ENSBSLG00000021423 ##11	pdzrn3b (ENSBSLG00000021173) #18	ppp4r2b (ENSBSLG00000021096)	gxylt2 (ENSBSLG00000021059) #20	shq1 (ENSBSLG00000021007) #21	rybpa (ENSBSLG00000020783) #22	prok2 (ENSBSLG00000020780)	gpr27 (ENSBSLG00000020778) #24	EIF4E3 (ENSBSLG00000020777) #25	foxp1b (ENSBSLG00000020745)	zgc:113054 (ENSBSLG00000020737)	mitfa (ENSBSLG00000020732) #28	FRMD4B (ENSBSLG00000020719) #29	arl6ip5a (ENSBSLG00000020715) #16	trnt1 (ENSBSLG00000020713) #9	ENSBSLG00000020712	lrrn1 (ENSBSLG00000020709)	setmar (ENSBSLG00000020708)	ITPR1 (ENSBSLG00000013775)	bhlhe40 (ENSBSLG00000013372)	NAAA (ENSBSLG00000013286)
Zig-zag eel	MODERN SPECIES	19	ift52 (ENSMAMG00000023472)	mybl2b (ENSMAMG00000023471)	ENSMAMG00000023466	ENSMAMG00000023462	ENSMAMG00000023460	ENSMAMG00000023458	ENSMAMG00000023454	cntn4 (ENSMAMG00000023452)	ENSMAMG00000023444	ENSMAMG00000023440	ENSMAMG00000023438 ##11	pdzrn3b (ENSMAMG00000023436) #18	ppp4r2b (ENSMAMG00000023435)	gxylt2 (ENSMAMG00000023433) #20	shq1 (ENSMAMG00000023432) #21	RYBP (ENSMAMG00000024392) #22	prok2 (ENSMAMG00000023429)	gpr27 (ENSMAMG00000023427) #24	EIF4E3 (ENSMAMG00000023426) #25	foxp1b (ENSMAMG00000023423)	zgc:113054 (ENSMAMG00000023417)	mitfa (ENSMAMG00000023414) #28	FRMD4B (ENSMAMG00000023408) #29	arl6ip5a (ENSMAMG00000023405) #16	trnt1 (ENSMAMG00000023401) #9	ENSMAMG00000023400	lrrn1 (ENSMAMG00000023397)	setmar (ENSMAMG00000023395)	ITPR1 (ENSMAMG00000023390)	ENSMAMG00000024536	bhlhe40 (ENSMAMG00000023386)
Carangaria	ANCESTRAL SPECIES	3	ENSGT00940000156091.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00940000165667	ENSGT01100000263545.a.b.c.a	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000167414.f	ENSGT00940000155198.B ##11	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b	ENSGT00730000111641.b #27	ENSGT00940000165309	ENSGT00390000011238	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00940000157154.d	ENSGT00940000162663	ENSGT00940000155071.C
Pleuronectoidei	ANCESTRAL SPECIES	4	ENSGT00390000011581	ENSGT00940000156091.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00940000165667	ENSGT01100000263545.a.b.c.a	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000167414.f	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b	ENSGT00940000165309.l	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00940000157154.d	ENSGT00940000162663	ENSGT00940000158384.d	ENSGT00530000063548.A	ENSGT00940000154861.n.a
Turbot	MODERN SPECIES	18	ENSSMAG00000029705	mybl2b (ENSSMAG00000017352)	ENSSMAG00000017289	ENSSMAG00000017270	ENSSMAG00000017221	ENSSMAG00000017064	ENSSMAG00000016752	cntn4 (ENSSMAG00000016676)	ENSSMAG00000016507	ENSSMAG00000016323	ENSSMAG00000016297 ##11	pdzrn3b (ENSSMAG00000016202) #18	ppp4r2b (ENSSMAG00000016193)	gxylt2 (ENSSMAG00000016180) #20	shq1 (ENSSMAG00000016151) #21	ENSSMAG00000023389 #22	prok2 (ENSSMAG00000016123)	gpr27 (ENSSMAG00000016102) #24	EIF4E3 (ENSSMAG00000016095) #25	foxp1b (ENSSMAG00000015987)	zgc:113054 (ENSSMAG00000015942)	mitfa (ENSSMAG00000015617) #28	FRMD4B (ENSSMAG00000015504) #29	arl6ip5a (ENSSMAG00000015475) #16	trnt1 (ENSSMAG00000015432) #9	ENSSMAG00000026170	lrrn1 (ENSSMAG00000015413)	setmar (ENSSMAG00000015405)	bhlhe40 (ENSSMAG00000026563)	ENSSMAG00000015251	ENSSMAG00000022883
Tongue sole	MODERN SPECIES	2	grm6b (ENSCSEG00000008243)	mon1a (ENSCSEG00000008235)	ENSCSEG00000008213	ENSCSEG00000008178	trnt1 (ENSCSEG00000008157) #9	arl6ip5a (ENSCSEG00000008154) #16	cntn4 (ENSCSEG00000008117)	ENSCSEG00000008067	ENSCSEG00000007957	ENSCSEG00000007911 ##11	pdzrn3b (ENSCSEG00000007883) #18	ppp4r2b (ENSCSEG00000007869)	gxylt2 (ENSCSEG00000007848) #20	shq1 (ENSCSEG00000007829) #21	ENSCSEG00000007818	rybpa (ENSCSEG00000007805) #22	prok2 (ENSCSEG00000007796)	gpr27 (ENSCSEG00000007794) #24	EIF4E3 (ENSCSEG00000007779) #25	foxp1b (ENSCSEG00000007746)	PLXNA1 (ENSCSEG00000007725)	ENSCSEG00000007720	ENSCSEG00000007716 ##30	EVC (ENSCSEG00000007676)	EVC2 (ENSCSEG00000007658)	CYTL1 (ENSCSEG00000007279)	msx1a (ENSCSEG00000007275)	stx18 (ENSCSEG00000007268)	NSG1 (ENSCSEG00000007259)	aggf1 (ENSCSEG00000007246)	ENSCSEG00000007225
Carangaria_A	ANCESTRAL SPECIES	7	ENSGT00940000156091.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00940000165667	ENSGT01100000263545.a.b.c.a	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000167414.f	ENSGT00940000155198.B ##11	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b	ENSGT00730000111641.b #27	ENSGT00940000165309	ENSGT00390000011238	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00940000157154.d	ENSGT00940000162663	ENSGT00940000155071.C
Barramundi perch	MODERN SPECIES	150						ENSLCAG00010023582	cntn4 (ENSLCAG00010023692)	ENSLCAG00010024221	ENSLCAG00010025055	ENSLCAG00010025678	ENSLCAG00010025778 ##11	pdzrn3b (ENSLCAG00010025981) #18	ppp4r2b (ENSLCAG00010025982)	gxylt2 (ENSLCAG00010025984) #20	shq1 (ENSLCAG00010025985) #21	rybpa (ENSLCAG00010025986) #22	prok2 (ENSLCAG00010025987)	gpr27 (ENSLCAG00010025988) #24	EIF4E3 (ENSLCAG00010025989) #25	foxp1b (ENSLCAG00010026063)	mdfic2 (ENSLCAG00010026283) #27	zgc:113054 (ENSLCAG00010026285)	mitfa (ENSLCAG00010026304) #28	FRMD4B (ENSLCAG00010026341) #29	arl6ip5a (ENSLCAG00010026345) #16	trnt1 (ENSLCAG00010026346) #9	ENSLCAG00010026347	lrrn1 (ENSLCAG00010026349)	setmar (ENSLCAG00010026350)	ITPR1 (ENSLCAG00010026357)
Seriola	ANCESTRAL SPECIES	10	ENSGT00940000156091.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00940000165667	ENSGT01100000263545.a.b.c.a	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000167414.f	ENSGT00940000155198.B ##11	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b	ENSGT00730000111641.b #27	ENSGT00940000165309	ENSGT00390000011238	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00940000157154.d	ENSGT00940000162663	ENSGT00940000155071.C
Greater amberjack	MODERN SPECIES	37	rpn2 (ENSSDUG00000011102)	ghrh (ENSSDUG00000011148)	cdk5rap1 (ENSSDUG00000011169)	ENSSDUG00000011234	EPB41L1 (ENSSDUG00000011310)	cntn4 (ENSSDUG00000011366)	ENSSDUG00000011740	ENSSDUG00000011750 ##11	ENSSDUG00000011773	ENSSDUG00000011808 ##11	ENSSDUG00000011863	pdzrn3b (ENSSDUG00000011879) #18	ppp4r2b (ENSSDUG00000011939)	gxylt2 (ENSSDUG00000011974) #20	shq1 (ENSSDUG00000011986) #21	rybpa (ENSSDUG00000012000) #22	ENSSDUG00000012010	ENSSDUG00000012021	prok2 (ENSSDUG00000012033)	gpr27 (ENSSDUG00000012040) #24	EIF4E3 (ENSSDUG00000012045) #25	foxp1b (ENSSDUG00000012073)	mdfic2 (ENSSDUG00000012140) #27	zgc:113054 (ENSSDUG00000012153)	ENSSDUG00000012183	mitfa (ENSSDUG00000012198) #28	FRMD4B (ENSSDUG00000012222) #29	arl6ip5a (ENSSDUG00000012308) #16	trnt1 (ENSSDUG00000012320) #9	ENSSDUG00000012333	lrrn1 (ENSSDUG00000012348)
Yellowtail amberjack	MODERN SPECIES	3081	mybl2b (ENSSLDG00000014798)	rpn2 (ENSSLDG00000014707)	ghrh (ENSSLDG00000014657)	cdk5rap1 (ENSSLDG00000014608)	ENSSLDG00000014581	ENSSLDG00000014388	cntn4 (ENSSLDG00000014310)	ENSSLDG00000014289	ENSSLDG00000014267 ##11	ENSSLDG00000014101	ENSSLDG00000014012 ##11	pdzrn3b (ENSSLDG00000013978) #18	ppp4r2b (ENSSLDG00000013949)	gxylt2 (ENSSLDG00000013934) #20	shq1 (ENSSLDG00000013908) #21	rybpa (ENSSLDG00000013888) #22	prok2 (ENSSLDG00000013872)	gpr27 (ENSSLDG00000013855) #24	EIF4E3 (ENSSLDG00000013831) #25	foxp1b (ENSSLDG00000013751)	mdfic2 (ENSSLDG00000013706) #27	zgc:113054 (ENSSLDG00000013673)
Eupercaria	ANCESTRAL SPECIES		ENSGT00390000011581	ENSGT00940000156091.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00940000165667	ENSGT01100000263545.a.b.c.a	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000167414.f	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b	ENSGT00940000178117	ENSGT00940000165309	ENSGT00390000011238	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00940000157154.d	ENSGT00940000162663	ENSGT00940000155071.C
Tetraodontidae	ANCESTRAL SPECIES	1	ENSGT00390000011581.c	ENSGT00940000156091.b	ENSGT00390000002635	ENSGT00940000169850	ENSGT00940000165667	ENSGT01100000263545.a.b.c.a	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000167414.f	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b	ENSGT00940000178117	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00390000004207	ENSGT00940000157562.q.a	ENSGT00950000183042.b.b	ENSGT00940000161154.a	ENSGT00940000159178
Fugu	MODERN SPECIES	10	ENSTRUG00000027705	ift52 (ENSTRUG00000014953)	mybl2b (ENSTRUG00000021040)	rpn2 (ENSTRUG00000014997)	ENSTRUG00000022153	cdk5rap1 (ENSTRUG00000015201)	ENSTRUG00000015256	cntn4 (ENSTRUG00000011158)	ENSTRUG00000011022	ENSTRUG00000010466	ENSTRUG00000009896 ##11	pdzrn3b (ENSTRUG00000009749) #18	ppp4r2b (ENSTRUG00000009646)	ENSTRUG00000009592	shq1 (ENSTRUG00000009446) #21	RYBP (ENSTRUG00000009347) #22	prok2 (ENSTRUG00000024827)	gpr27 (ENSTRUG00000003935) #24	EIF4E3 (ENSTRUG00000022670) #25	foxp1b (ENSTRUG00000001947)	ENSTRUG00000031691	mitfa (ENSTRUG00000001600) #28	FRMD4B (ENSTRUG00000001241) #29	arl6ip5a (ENSTRUG00000019898) #16	trnt1 (ENSTRUG00000001088) #9	ENSTRUG00000001010	acot8 (ENSTRUG00000000939)	phactr3b (ENSTRUG00000000766)	ENSTRUG00000000605	CHST13 (ENSTRUG00000026383)	txnrd3 (ENSTRUG00000000449)
Tetraodon	MODERN SPECIES	2	lrrn1 (ENSTNIG00000007340)	mybl2b (ENSTNIG00000007341)	rpn2 (ENSTNIG00000007342)	ENSTNIG00000007343	cdk5rap1 (ENSTNIG00000007344)	ENSTNIG00000007345	EPB41L1 (ENSTNIG00000007346)	cntn4 (ENSTNIG00000007347)	ENSTNIG00000007348	ENSTNIG00000007349	ENSTNIG00000007350 ##11	pdzrn3b (ENSTNIG00000007351) #18	ppp4r2b (ENSTNIG00000007352)	gxylt2 (ENSTNIG00000007353) #20	shq1 (ENSTNIG00000007354) #21	RYBP (ENSTNIG00000007355) #22	prok2 (ENSTNIG00000007356)	EIF4E3 (ENSTNIG00000007358) #25	foxp1b (ENSTNIG00000007359)	mitfa (ENSTNIG00000007360) #28	FRMD4B (ENSTNIG00000007361) #29	arl6ip5a (ENSTNIG00000007362) #16	trnt1 (ENSTNIG00000007363) #9	ENSTNIG00000007364	acot8 (ENSTNIG00000007365)	phactr3b (ENSTNIG00000007366)	ENSTNIG00000007367	CHST13 (ENSTNIG00000007368)	txnrd3 (ENSTNIG00000007369)	bin2b (ENSTNIG00000007370)	wnt4 (ENSTNIG00000007371)
Eupecaria_A	ANCESTRAL SPECIES		ENSGT00390000011581	ENSGT00940000156091.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00940000165667	ENSGT01100000263545.a.b.c.a	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000167414.f	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b	ENSGT00940000178117	ENSGT00940000165309	ENSGT00390000011238	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00940000157154.d	ENSGT00940000162663	ENSGT00940000155071.C
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	265												ENSLBEG00000017415	prok2 (ENSLBEG00000017447)	ENSLBEG00000017471	ENSLBEG00000017487	rybpa (ENSLBEG00000017510) #22	sec61a1 (ENSLBEG00000017523)	CHCHD4 (ENSLBEG00000017549)	uroc1 (ENSLBEG00000017571)	MAPKAPK3 (ENSLBEG00000017649)	pfkfb4b (ENSLBEG00000017699)	arpc4 (ENSLBEG00000017780)	ENSLBEG00000017798	ENSLBEG00000017835	GATA2 (ENSLBEG00000017873)	eefsec (ENSLBEG00000017908)	ruvbl1 (ENSLBEG00000017947)	ENSLBEG00000017983	RFT1 (ENSLBEG00000018042)	prkcda (ENSLBEG00000018188)	ENSLBEG00000018259
Ballan wrasse	MODERN SPECIES	3108																RYBP (ENSLBEG00000009163) #22
Eupecaria_B	ANCESTRAL SPECIES	2	ENSGT00390000011581	ENSGT00940000156091.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00940000165667	ENSGT01100000263545.a.b.c.a	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000167414.f	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b	ENSGT00940000165309	ENSGT00390000011238	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00940000157154.d	ENSGT00940000162663	ENSGT00940000155071.C	ENSGT00940000177280
Eupecaria_C	ANCESTRAL SPECIES		ENSGT00390000011581	ENSGT00940000156091.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00940000165667	ENSGT01100000263545.a.b.c.a	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000167414.f	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b	ENSGT00940000178117	ENSGT00940000165309	ENSGT00390000011238	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00940000157154.d	ENSGT00940000162663	ENSGT00940000155071.C
Gilthead seabream	MODERN SPECIES	20	rpn2 (ENSSAUG00010027574)	ghrh (ENSSAUG00010027560)	cdk5rap1 (ENSSAUG00010027549)	ENSSAUG00010027547	EPB41L1 (ENSSAUG00010027538)	cntn4 (ENSSAUG00010027431)	ENSSAUG00010027048	ENSSAUG00010022690	ENSSAUG00010022516	ENSSAUG00010022515	ENSSAUG00010021023 ##11	pdzrn3b (ENSSAUG00010021000) #18	ppp4r2b (ENSSAUG00010020996)	gxylt2 (ENSSAUG00010020993) #20	shq1 (ENSSAUG00010020992) #21	rybpa (ENSSAUG00010020990) #22	prok2 (ENSSAUG00010020989)	gpr27 (ENSSAUG00010020987) #24	EIF4E3 (ENSSAUG00010020986) #25	foxp1b (ENSSAUG00010020403)	ENSSAUG00010020379	zgc:113054 (ENSSAUG00010020378)	mitfa (ENSSAUG00010020177) #28	FRMD4B (ENSSAUG00010020175) #29	arl6ip5a (ENSSAUG00010020174) #16	trnt1 (ENSSAUG00010020172) #9	ENSSAUG00010020169	lrrn1 (ENSSAUG00010020168)	setmar (ENSSAUG00010020167)	ITPR1 (ENSSAUG00010018947)	bhlhe40 (ENSSAUG00010018934)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES		ENSGT00390000011581	ENSGT00940000156091.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00940000165667	ENSGT01100000263545.a.b.c.a	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000167414.f	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b	ENSGT00940000178117	ENSGT00940000165309	ENSGT00390000011238	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00940000157154.d	ENSGT00940000162663	ENSGT00940000155071.C
European seabass	MODERN SPECIES	10	acot8 (ENSDLAG00005012413)	mybl2b (ENSDLAG00005012484)	ENSDLAG00005012669	ENSDLAG00005013482	ENSDLAG00005013516	ENSDLAG00005013604	ENSDLAG00005013781	cntn4 (ENSDLAG00005015182)	ENSDLAG00005019553	ENSDLAG00005022052	ENSDLAG00005023906 ##11	PDZRN3 (ENSDLAG00005024059) #18	ppp4r2b (ENSDLAG00005024099)	gxylt2 (ENSDLAG00005024140) #20	shq1 (ENSDLAG00005029441) #21	RYBP (ENSDLAG00005024156) #22	prok2 (ENSDLAG00005024161)	EIF4E3 (ENSDLAG00005027715) #25	gpr27 (ENSDLAG00005024164) #24	foxp1b (ENSDLAG00005024201)	ENSDLAG00005024437	zgc:113054 (ENSDLAG00005024440)	ENSDLAG00005028768	mitfa (ENSDLAG00005024449) #28	FRMD4B (ENSDLAG00005024483) #29	arl6ip5a (ENSDLAG00005024563) #16	trnt1 (ENSDLAG00005026509) #9	LRRN1 (ENSDLAG00005032471)	setmar (ENSDLAG00005032118)	ITPR1 (ENSDLAG00005024685)	bhlhe40 (ENSDLAG00005025285)
Large yellow croaker	MODERN SPECIES		ift52 (ENSLCRG00005012323)	mybl2b (ENSLCRG00005012317)	rpn2 (ENSLCRG00005012068)	ENSLCRG00005012062	cdk5rap1 (ENSLCRG00005012007)	ENSLCRG00005011993	cntn4 (ENSLCRG00005010873)	ENSLCRG00005005460	ENSLCRG00005005415	ENSLCRG00005005149	ENSLCRG00005000576 ##11	pdzrn3b (ENSLCRG00005000512) #18	ppp4r2b (ENSLCRG00005000505)	gxylt2 (ENSLCRG00005000503) #20	shq1 (ENSLCRG00005000499) #21	RYBP (ENSLCRG00005000497) #22	prok2 (ENSLCRG00005000494)	gpr27 (ENSLCRG00005000493) #24	EIF4E3 (ENSLCRG00005000492) #25	foxp1b (ENSLCRG00005000348)	zgc:113054 (ENSLCRG00005000288)	mitfa (ENSLCRG00005000244) #28	mbd1b (ENSLCRG00005000194)	ccdc120b (ENSLCRG00005000159)	SRPK3 (ENSLCRG00005000084)	comtb (ENSLCRG00005023001)	grm6b (ENSLCRG00005022971)	traip (ENSLCRG00005022970)	mon1a (ENSLCRG00005022969)	ENSLCRG00005022968	camkvb (ENSLCRG00005022967)
Perciformes	ANCESTRAL SPECIES		ENSGT00390000011581	ENSGT00940000156091.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00940000165667	ENSGT01100000263545.a.b.c.a	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000167414.f	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b	ENSGT00940000165309	ENSGT00390000011238	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00940000157154.d	ENSGT00940000162663	ENSGT00940000155071.C	ENSGT00940000177280
Perciformes_a	ANCESTRAL SPECIES	27	ENSGT00390000011581	ENSGT00940000156091.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00940000165667	ENSGT01100000263545.a.b.c.a	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000167414.f	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b	ENSGT00940000165309	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00940000157154.d	ENSGT00940000162663	ENSGT00940000155071.C	ENSGT00940000177280	ENSGT00940000158384.d
Channel bull blenny	MODERN SPECIES	19	mybl2b (ENSCGOG00000011714)	rpn2 (ENSCGOG00000011889)	ghrh (ENSCGOG00000012944)	cdk5rap1 (ENSCGOG00000012950)	ENSCGOG00000013047	ENSCGOG00000013152	cntn4 (ENSCGOG00000013869)	ENSCGOG00000017020	ENSCGOG00000017817	ENSCGOG00000019577	ENSCGOG00000019605 ##11	pdzrn3b (ENSCGOG00000020351) #18	ppp4r2b (ENSCGOG00000020375)	gxylt2 (ENSCGOG00000020385) #20	shq1 (ENSCGOG00000020389) #21	rybpa (ENSCGOG00000020403) #22	NXPE3 (ENSCGOG00000020409)	ENSCGOG00000020411	NXPE3 (ENSCGOG00000020413)	NXPE3 (ENSCGOG00000020414)	ENSCGOG00000020418	ENSCGOG00000020419	prok2 (ENSCGOG00000020420)	gpr27 (ENSCGOG00000020421) #24	EIF4E3 (ENSCGOG00000020423) #25	foxp1b (ENSCGOG00000020445)	zgc:113054 (ENSCGOG00000021042)	mitfa (ENSCGOG00000021055) #28	FRMD4B (ENSCGOG00000021135) #29	arl6ip5a (ENSCGOG00000021199) #16	trnt1 (ENSCGOG00000021203) #9
Pike perch	MODERN SPECIES	11	ift52 (ENSSLUG00000016763)	mybl2b (ENSSLUG00000016609)	rpn2 (ENSSLUG00000016018)	ghrh (ENSSLUG00000015877)	cdk5rap1 (ENSSLUG00000015545)	ENSSLUG00000015505	EPB41L1 (ENSSLUG00000015282)	cntn4 (ENSSLUG00000015218)	ENSSLUG00000014659	ENSSLUG00000010897	ENSSLUG00000010487 ##11	pdzrn3b (ENSSLUG00000010409) #18	ppp4r2b (ENSSLUG00000010404)	gxylt2 (ENSSLUG00000010399) #20	shq1 (ENSSLUG00000010395) #21	rybpa (ENSSLUG00000010391) #22	prok2 (ENSSLUG00000010387)	gpr27 (ENSSLUG00000010385) #24	EIF4E3 (ENSSLUG00000010383) #25	foxp1b (ENSSLUG00000010380)	zgc:113054 (ENSSLUG00000010375)	mitfa (ENSSLUG00000010357) #28	FRMD4B (ENSSLUG00000010314) #29	arl6ip5a (ENSSLUG00000010291) #16	trnt1 (ENSSLUG00000010274) #9	ENSSLUG00000010265	lrrn1 (ENSSLUG00000010263)	setmar (ENSSLUG00000010262)	ITPR1 (ENSSLUG00000007574)	bhlhe40 (ENSSLUG00000007397)	NAAA (ENSSLUG00000007391)
Cottioidei	ANCESTRAL SPECIES		ENSGT00390000004207	ENSGT00390000011581	ENSGT00940000156091.b	ENSGT00390000002635	ENSGT00950000183154.b.b	ENSGT00940000165667	ENSGT01100000263545.a.b.c.a	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b	ENSGT00940000165309	ENSGT00390000011238	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00940000157154.d	ENSGT00940000162663	ENSGT00940000155071.C	ENSGT00940000158384.d
Lumpfish	MODERN SPECIES	20	rpn2 (ENSCLMG00005019160)	ghrh (ENSCLMG00005020149)	cdk5rap1 (ENSCLMG00005020152)	ENSCLMG00005020168	EPB41L1 (ENSCLMG00005020214)	cntn4 (ENSCLMG00005020432)	ENSCLMG00005020433	ENSCLMG00005020437	ENSCLMG00005020462	ENSCLMG00005020463	ENSCLMG00005020484 ##11	pdzrn3b (ENSCLMG00005020516) #18	ppp4r2b (ENSCLMG00005020517)	gxylt2 (ENSCLMG00005020518) #20	shq1 (ENSCLMG00005020519) #21	rybpa (ENSCLMG00005020520) #22	prok2 (ENSCLMG00005020521)	gpr27 (ENSCLMG00005020522) #24	EIF4E3 (ENSCLMG00005000065) #25	foxp1b (ENSCLMG00005000158)	zgc:113054 (ENSCLMG00005000299)	mitfa (ENSCLMG00005000306) #28	FRMD4B (ENSCLMG00005000334) #29	arl6ip5a (ENSCLMG00005000354) #16	trnt1 (ENSCLMG00005000360) #9	ENSCLMG00005000366	lrrn1 (ENSCLMG00005000418)	setmar (ENSCLMG00005000422)	ENSCLMG00005000519	bhlhe40 (ENSCLMG00005003585)	ENSCLMG00005003609
Stickleback	MODERN SPECIES	17	fezf2 (ENSGACG00000011629)	ptprga (ENSGACG00000011636)	PLEKHA6 (ENSGACG00000011651)	cacna1sa (ENSGACG00000011658)	apobec2a (ENSGACG00000011671)	ENSGACG00000011673	ENSGACG00000011676	EPB41L1 (ENSGACG00000011718)	cntn4 (ENSGACG00000011729)	ENSGACG00000011735	ENSGACG00000011748 ##11	pdzrn3b (ENSGACG00000011770) #18	ppp4r2b (ENSGACG00000011779)	gxylt2 (ENSGACG00000011788) #20	shq1 (ENSGACG00000011797) #21	RYBP (ENSGACG00000011809) #22	prok2 (ENSGACG00000011815)	gpr27 (ENSGACG00000011823) #24	EIF4E3 (ENSGACG00000011825) #25	foxp1b (ENSGACG00000011839)	zgc:113054 (ENSGACG00000011845)	ENSGACG00000011871	mitfa (ENSGACG00000011875) #28	FRMD4B (ENSGACG00000011892) #29	arl6ip5a (ENSGACG00000011898) #16	trnt1 (ENSGACG00000011903) #9	lrrn1 (ENSGACG00000011915)	setmar (ENSGACG00000011919)	ITPR1 (ENSGACG00000011921)	bhlhe40 (ENSGACG00000011940)	ENSGACG00000011962
Cod	MODERN SPECIES	4	mybl2b (ENSGMOG00000014402)	ENSGMOG00000014382	ENSGMOG00000025069	ENSGMOG00000014341	ENSGMOG00000006705	ENSGMOG00000006921	cntn4 (ENSGMOG00000006949)	ENSGMOG00000006963 ##11	ENSGMOG00000029697	ENSGMOG00000007280	ENSGMOG00000007303 ##11	pdzrn3b (ENSGMOG00000023182) #18	ppp4r2b (ENSGMOG00000007337)	gxylt2 (ENSGMOG00000007346) #20	shq1 (ENSGMOG00000007350) #21	RYBP (ENSGMOG00000031302) #22	prok2 (ENSGMOG00000026303)	gpr27 (ENSGMOG00000007387) #24	EIF4E3 (ENSGMOG00000007389) #25	foxp1b (ENSGMOG00000007392)	zgc:113054 (ENSGMOG00000007404)	mitfa (ENSGMOG00000007421) #28	FRMD4B (ENSGMOG00000007429) #29	arl6ip5a (ENSGMOG00000007454) #16	ENSGMOG00000007460 #9	ENSGMOG00000035810	ENSGMOG00000007467	slc6a1b (ENSGMOG00000003780)	ENSGMOG00000003748	atp2b2 (ENSGMOG00000003698)	iars1 (ENSGMOG00000003632)
Protacanthopterygii	ANCESTRAL SPECIES	24	ENSGT00940000153776.a.b.h.b	ENSGT00390000011581	ENSGT00940000156091.b	ENSGT00390000002635	ENSGT00940000169850	ENSGT00940000160361	ENSGT00940000158442	ENSGT00940000164786.a	ENSGT00940000155198.B ##11	ENSGT00940000165371.a	ENSGT00940000155198.A ##11	ENSGT00950000183062.a.a.a #18	ENSGT00940000162859.o	ENSGT00940000158065 #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a #22	ENSGT00940000167138	ENSGT00890000139436.A.a #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b	ENSGT00730000111641.b #27	ENSGT00940000165309	ENSGT00390000004409.b	ENSGT00940000156326.a.b #28	ENSGT01020000230354.A.a.a #29	ENSGT00390000008631.a.o.a #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a	ENSGT00940000157154.d	ENSGT00940000162663	ENSGT00940000155071.C
Salmoninae	ANCESTRAL SPECIES	103											ENSGT00940000155198.A.f.a.a ##11	ENSGT00950000183062.a.a.a.b #18	ENSGT00940000162859.o.f	ENSGT00940000158065.f #20	ENSGT00940000177762	ENSGT00390000013995.b.a #22	ENSGT00940000167138.a	ENSGT00890000139436.A.a.b #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b.c	ENSGT00730000111641.b #27	ENSGT00940000165309.e.a	ENSGT00940000156326.a.b.c #28	ENSGT01020000230354.A.a.a.d #29	ENSGT00390000008631.a.o.a.b #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a.c	ENSGT00940000157154.d.f	ENSGT00940000162663.c	ENSGT00940000155071.C.e	ENSGT00940000158384.d.d
Salmoninae_a	DUPLICATION
Salmoninae_a	ANCESTRAL SPECIES	25	ENSGT00390000011581	ENSGT00940000156091.b.h	ENSGT00390000002635.c	ENSGT00950000183154.b.b	ENSGT00940000165667.a	ENSGT01100000263545.a.b.c.a.q	ENSGT00940000158442.k	ENSGT00940000164786.a.g.a	ENSGT00940000155198.B.g ##11	ENSGT00940000165371.a.e	ENSGT00940000155198.A.e ##11	ENSGT00950000183062.a.a.a.a #18	ENSGT00940000162859.o.e	ENSGT00940000158065.e #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a.`b #22	ENSGT00940000167138.b	ENSGT00890000139436.A.a.a #24	ENSGT00940000165920.b.d	ENSGT00940000165309.e.b	ENSGT00940000156326.a.b.d #28	ENSGT01020000230354.A.a.a.c #29	ENSGT00390000008631.a.o.a.a #16	ENSGT01010000224106	ENSGT01050000244882.b.c.a.a.d	ENSGT00940000157154.d.e	ENSGT00940000162663.d	ENSGT00940000155071.C.f	ENSGT00940000158384.d.c	ENSGT00940000156703.e.a.b	ENSGT00940000156468.f.c
Salmo	ANCESTRAL SPECIES	6	ENSGT00390000002635.c	ENSGT00950000183154.b.b	ENSGT00940000160361	ENSGT01100000263545.a.b.c.a.q	ENSGT00940000163346.a.i.b.b.a	ENSGT00940000163346.a.i.b.b.b	ENSGT00940000158442.k	ENSGT00940000164786.a.g.a	ENSGT00940000155198.B.g ##11	ENSGT00940000165371.a.e	ENSGT00940000155198.A.e ##11	ENSGT00950000183062.a.a.a.a #18	ENSGT00940000162859.o.e	ENSGT00940000158065.e #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a.`b #22	ENSGT00940000167138.b	ENSGT00890000139436.A.a.a #24	ENSGT00940000165920.b.d	ENSGT00940000165309.e.b	ENSGT00940000156326.a.b.d #28	ENSGT01020000230354.A.a.a.c #29	ENSGT00390000008631.a.o.a.a #16	ENSGT00390000009678.f #9	ENSGT01010000224106	ENSGT01050000244882.b.c.a.a.d	ENSGT00940000157154.d.e	ENSGT00940000162663.d	ENSGT00940000155071.C.f	ENSGT00940000158384.d.c	ENSGT00940000156703.e.a.b
Atlantic salmon	DUPLICATION
Atlantic salmon	MODERN SPECIES	14	ENSSSAG00000072680	ENSSSAG00000071328	ENSSSAG00000111168	hes5 (ENSSSAG00000077365)	ENSSSAG00000077358	ENSSSAG00000051104	cntn4 (ENSSSAG00000057173)	ENSSSAG00000068685 ##11	ENSSSAG00000069369	ENSSSAG00000074668 ##11	pdzrn3b (ENSSSAG00000077728) #18	ppp4r2b (ENSSSAG00000115308)	gxylt2 (ENSSSAG00000077755) #20	shq1 (ENSSSAG00000077767) #21	ENSSSAG00000103273 #22	RYBP (ENSSSAG00000105530) #22	prok2 (ENSSSAG00000077791)	gpr27 (ENSSSAG00000093272) #24	foxp1b (ENSSSAG00000077820)	ENSSSAG00000121941	zgc:113054 (ENSSSAG00000078317)	mitfa (ENSSSAG00000078323) #28	FRMD4B (ENSSSAG00000078356) #29	arl6ip5a (ENSSSAG00000098089) #16	trnt1 (ENSSSAG00000078413) #9	ENSSSAG00000087334	ENSSSAG00000078424	lrrn1 (ENSSSAG00000085844)	setmar (ENSSSAG00000078434)	ENSSSAG00000078769	BHLH2 (ENSSSAG00000081153)
Atlantic salmon	MODERN SPECIES	14	bpifb2 (ENSSSAG00000077275)	ENSSSAG00000072680	ENSSSAG00000071328	ENSSSAG00000111168	hes5 (ENSSSAG00000077365)	ENSSSAG00000077358	ENSSSAG00000051104	cntn4 (ENSSSAG00000057173)	ENSSSAG00000068685 ##11	ENSSSAG00000069369	ENSSSAG00000074668 ##11	pdzrn3b (ENSSSAG00000077728) #18	ppp4r2b (ENSSSAG00000115308)	gxylt2 (ENSSSAG00000077755) #20	shq1 (ENSSSAG00000077767) #21	ENSSSAG00000103273 #22	RYBP (ENSSSAG00000105530) #22	prok2 (ENSSSAG00000077791)	gpr27 (ENSSSAG00000093272) #24	foxp1b (ENSSSAG00000077820)	ENSSSAG00000121941	zgc:113054 (ENSSSAG00000078317)	mitfa (ENSSSAG00000078323) #28	FRMD4B (ENSSSAG00000078356) #29	arl6ip5a (ENSSSAG00000098089) #16	trnt1 (ENSSSAG00000078413) #9	ENSSSAG00000087334	ENSSSAG00000078424	lrrn1 (ENSSSAG00000085844)	setmar (ENSSSAG00000078434)	ENSSSAG00000078769
River trout	MODERN SPECIES	7	ENSSTUG00000044708	ENSSTUG00000044692	ENSSTUG00000044687	ENSSTUG00000044647	ENSSTUG00000044636	ENSSTUG00000044631	ENSSTUG00000043834	cntn4 (ENSSTUG00000038446)	ENSSTUG00000036007 ##11	ENSSTUG00000035461	ENSSTUG00000035268 ##11	pdzrn3b (ENSSTUG00000035228) #18	ppp4r2b (ENSSTUG00000035210)	gxylt2 (ENSSTUG00000035198) #20	shq1 (ENSSTUG00000035153) #21	RYBP (ENSSTUG00000035141) #22	prok2 (ENSSTUG00000035134)	gpr27 (ENSSTUG00000035129) #24	foxp1b (ENSSTUG00000034974)	zgc:113054 (ENSSTUG00000034952)	mitfa (ENSSTUG00000034903) #28	FRMD4B (ENSSTUG00000034835) #29	arl6ip5a (ENSSTUG00000034827) #16	ENSSTUG00000034824	ENSSTUG00000034758	lrrn1 (ENSSTUG00000034747)	ENSSTUG00000034740	setmar (ENSSTUG00000034728)	ITPR1 (ENSSTUG00000034046)	bhlhe40 (ENSSTUG00000037370)	SEMA3F (ENSSTUG00000036160)
Oncorhynchus	ANCESTRAL SPECIES	5	ENSGT00390000002635.c	ENSGT00950000183154.b.b	ENSGT00940000165667.a	ENSGT01100000263545.a.b.c.a.q	ENSGT00940000163346.a.i.b.b.b.f.a	ENSGT00940000163346.a.i.b.b.b.f.b	ENSGT00940000158442.k	ENSGT00940000164786.a.g.a	ENSGT00940000155198.B.g ##11	ENSGT00940000165371.a.e	ENSGT00940000155198.A.e ##11	ENSGT00950000183062.a.a.a.a #18	ENSGT00940000162859.o.e	ENSGT00940000158065.e #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a.`b #22	ENSGT00940000167138.b	ENSGT00890000139436.A.a.a #24	ENSGT00940000165920.b.d	ENSGT00940000165309.e.b	ENSGT00940000156326.a.b.d #28	ENSGT01020000230354.A.a.a.c #29	ENSGT00390000008631.a.o.a.a #16	ENSGT01010000224106	ENSGT01050000244882.b.c.a.a.d	ENSGT00940000157154.d.e	ENSGT00940000162663.d	ENSGT00940000155071.C.f	ENSGT00940000158384.d.c	ENSGT00940000156703.e.a.b	ENSGT00940000156468.f.c
Rainbow trout	MODERN SPECIES	28	ENSOMYG00000020824	lbp/bpi-1 (ENSOMYG00000021186)	ENSOMYG00000027841	ENSOMYG00000021216	ENSOMYG00000001360	ENSOMYG00000001699	cntn4 (ENSOMYG00000002873)	ENSOMYG00000007157 ##11	ENSOMYG00000011770	ENSOMYG00000017727 ##11	pdzrn3b (ENSOMYG00000017773) #18	ppp4r2b (ENSOMYG00000017842)	gxylt2 (ENSOMYG00000017886) #20	shq1 (ENSOMYG00000017934) #21	ENSOMYG00000077625	RYBP (ENSOMYG00000018018) #22	ENSOMYG00000063847	prok2 (ENSOMYG00000018025)	gpr27 (ENSOMYG00000018032) #24	foxp1b (ENSOMYG00000018060)	ENSOMYG00000018605	mitfa (ENSOMYG00000018633) #28	FRMD4B (ENSOMYG00000018705) #29	praf3 (ENSOMYG00000018762) #16	ENSOMYG00000018779	lrrn1 (ENSOMYG00000018787)	setmar (ENSOMYG00000018797)	ENSOMYG00000058313	ENSOMYG00000018924	ENSOMYG00000019279	bhlhe40 (ENSOMYG00000019293)
Oncorhynchus_a	ANCESTRAL SPECIES	4	ENSGT00390000002635.c	ENSGT00950000183154.b.b	ENSGT00940000165667.a	ENSGT01100000263545.a.b.c.a.q	ENSGT00940000163346.a.i.b.b.b.f.b	ENSGT00940000163346.a.i.b.b.b.f.a	ENSGT00940000158442.k	ENSGT00940000164786.a.g.a	ENSGT00940000155198.B.g ##11	ENSGT00940000165371.a.e	ENSGT00940000155198.A.e ##11	ENSGT00950000183062.a.a.a.a #18	ENSGT00940000162859.o.e	ENSGT00940000158065.e #20	ENSGT00390000007605 #21	ENSGT00390000013995.b.a.`b #22	ENSGT00940000167138.b	ENSGT00890000139436.A.a.a #24	ENSGT00940000165920.b.d	ENSGT00940000165309.e.b	ENSGT00940000156326.a.b.d #28	ENSGT01020000230354.A.a.a.c #29	ENSGT00390000008631.a.o.a.a #16	ENSGT01010000224106	ENSGT01050000244882.b.c.a.a.d	ENSGT00940000157154.d.e	ENSGT00940000162663.d	ENSGT00940000155071.C.f	ENSGT00940000158384.d.c	ENSGT00940000156703.e.a.b	ENSGT00940000156468.f.c
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	31	cdk5rap1 (ENSOTSG00005012188)	ENSOTSG00005012423	ENSOTSG00005012426	ENSOTSG00005012427	EPB41L1 (ENSOTSG00005012433)	cntn4 (ENSOTSG00005012641)	ENSOTSG00005027201 ##11	ENSOTSG00005027529	ENSOTSG00005029427 ##11	ENSOTSG00005029428 ##11	pdzrn3b (ENSOTSG00005029430) #18	ppp4r2b (ENSOTSG00005029431)	gxylt2 (ENSOTSG00005029433) #20	shq1 (ENSOTSG00005029435) #21	ENSOTSG00005029445 #22	RYBP (ENSOTSG00005029447) #22	prok2 (ENSOTSG00005029448)	gpr27 (ENSOTSG00005029449) #24	foxp1b (ENSOTSG00005029453)	zgc:113054 (ENSOTSG00005029466)	mitfa (ENSOTSG00005029470) #28	FRMD4B (ENSOTSG00005029474) #29	arl6ip5a (ENSOTSG00005029485) #16	ENSOTSG00005029486	ENSOTSG00005029487	lrrn1 (ENSOTSG00005029488)	setmar (ENSOTSG00005029489)	ITPR1 (ENSOTSG00005029499)	bhlhe40 (ENSOTSG00005029834)	SEMA3F (ENSOTSG00005029841)	camkvb (ENSOTSG00005030318)
Chinook salmon	MODERN SPECIES	31	ghrh (ENSOTSG00005012186)	cdk5rap1 (ENSOTSG00005012188)	ENSOTSG00005012423	ENSOTSG00005012426	ENSOTSG00005012427	EPB41L1 (ENSOTSG00005012433)	cntn4 (ENSOTSG00005012641)	ENSOTSG00005027201 ##11	ENSOTSG00005027529	ENSOTSG00005029427 ##11	ENSOTSG00005029428 ##11	pdzrn3b (ENSOTSG00005029430) #18	ppp4r2b (ENSOTSG00005029431)	gxylt2 (ENSOTSG00005029433) #20	shq1 (ENSOTSG00005029435) #21	ENSOTSG00005029445 #22	RYBP (ENSOTSG00005029447) #22	prok2 (ENSOTSG00005029448)	gpr27 (ENSOTSG00005029449) #24	foxp1b (ENSOTSG00005029453)	zgc:113054 (ENSOTSG00005029466)	mitfa (ENSOTSG00005029470) #28	FRMD4B (ENSOTSG00005029474) #29	arl6ip5a (ENSOTSG00005029485) #16	ENSOTSG00005029486	ENSOTSG00005029487	lrrn1 (ENSOTSG00005029488)	setmar (ENSOTSG00005029489)	ITPR1 (ENSOTSG00005029499)	bhlhe40 (ENSOTSG00005029834)	SEMA3F (ENSOTSG00005029841)
Coho salmon	MODERN SPECIES	25	ENSOKIG00005043778	ENSOKIG00005043794	ENSOKIG00005043800	ENSOKIG00005043808	ENSOKIG00005043822	EPB41L1 (ENSOKIG00005043871)	cntn4 (ENSOKIG00005044284)	ENSOKIG00005047391	ENSOKIG00005047528 ##11	ENSOKIG00005048581	ENSOKIG00005049593 ##11	pdzrn3b (ENSOKIG00005049640) #18	ppp4r2b (ENSOKIG00005049651)	gxylt2 (ENSOKIG00005049658) #20	shq1 (ENSOKIG00005049664) #21	RYBP (ENSOKIG00005049678) #22	prok2 (ENSOKIG00005049681)	gpr27 (ENSOKIG00005049684) #24	ENSOKIG00005049689	foxp1b (ENSOKIG00005049705)	mitfa (ENSOKIG00005049743) #28	FRMD4B (ENSOKIG00005049789) #29	arl6ip5a (ENSOKIG00005000004) #16	ENSOKIG00005000022	ENSOKIG00005000039	lrrn1 (ENSOKIG00005000048)	ITPR1 (ENSOKIG00005000297)	bhlhe40 (ENSOKIG00005000439)	SEMA3F (ENSOKIG00005000482)	camkvb (ENSOKIG00005000557)	ENSOKIG00005000585
Salmoninae_a	ANCESTRAL SPECIES	29	ENSGT00940000156091.b.g	ENSGT00390000002635.d	ENSGT01100000263515.a.b.a.b.a.g	ENSGT01100000263545.a.b.c.a.r	ENSGT00940000158442.l	ENSGT00940000164786.a.g.b	ENSGT00940000155198.B.h ##11	ENSGT00940000165371.a.f	ENSGT00940000155198.A.f.a.b ##11	ENSGT00940000155198.A.f.b ##11	ENSGT00940000155198.A.f.a.a ##11	ENSGT00950000183062.a.a.a.b #18	ENSGT00940000162859.o.f	ENSGT00940000158065.f #20	ENSGT00940000177762	ENSGT00390000013995.b.a.ab #22	ENSGT00940000167138.a	ENSGT00890000139436.A.a.b #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b.c	ENSGT00730000111641.b #27	ENSGT00940000165309.e.a	ENSGT00940000156326.a.b.c #28	ENSGT01020000230354.A.a.a.d #29	ENSGT00390000008631.a.o.a.b #16	ENSGT00390000009678 #9	ENSGT01050000244882.b.c.a.a.c	ENSGT00940000157154.d.f	ENSGT00940000162663.c	ENSGT00940000155071.C.e	ENSGT00940000158384.d.d
Oncorhynchus	ANCESTRAL SPECIES	1	ENSGT00940000160286.ib	ENSGT00940000156091.b.g	ENSGT00390000002635.d	ENSGT01100000263515.a.b.a.b.a.g	ENSGT01100000263545.a.b.c.a.r	ENSGT00940000158442.l	ENSGT00940000164786.a.g.b	ENSGT00940000155198.B.h ##11	ENSGT00940000165371.a.f	ENSGT00940000155198.A.f.a.b ##11	ENSGT00940000155198.A.f.a.a ##11	ENSGT00950000183062.a.a.a.b #18	ENSGT00940000162859.o.f	ENSGT00940000158065.f #20	ENSGT00940000177762	ENSGT00390000013995.b.a.ab #22	ENSGT00940000167138.a	ENSGT00890000139436.A.a.b #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b.c	ENSGT00730000111641.b #27	ENSGT00940000165309.e.a	ENSGT00940000156326.a.b.c #28	ENSGT01020000230354.A.a.a.d #29	ENSGT00390000008631.a.o.a.b #16	ENSGT00390000009678.h #9	ENSGT01050000244882.b.c.a.a.c	ENSGT00940000157154.d.f	ENSGT00940000162663.c	ENSGT00940000155071.C.e	ENSGT00940000158384.d.d
Oncorhynchus_a	ANCESTRAL SPECIES	3	ENSGT00390000002635.d	ENSGT01100000263515.a.b.a.b.a.g	ENSGT01100000263545.a.b.c.a.r	ENSGT00940000163346.a.i.b.b.a	ENSGT01060000248883.b	ENSGT00940000158442.l	ENSGT00940000164786.a.g.b	ENSGT00940000155198.B.h ##11	ENSGT00940000165371.a.f	ENSGT00940000155198.A.f.a.b ##11	ENSGT00940000155198.A.f.a.a ##11	ENSGT00950000183062.a.a.a.b #18	ENSGT00940000162859.o.f	ENSGT00940000158065.f #20	ENSGT00940000177762	ENSGT00390000013995.b.a.ab #22	ENSGT00890000139436.A.a.b #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b.c	ENSGT00730000111641.b #27	ENSGT00940000165309.e.a	ENSGT00940000156326.a.b.c #28	ENSGT01020000230354.A.a.a.d #29	ENSGT00390000008631.a.o.a.b #16	ENSGT00390000009678.h #9	ENSGT01050000244882.b.c.a.a.c	ENSGT00940000157154.d.f	ENSGT00940000162663.c	ENSGT00940000155071.C.e	ENSGT00940000158384.d.d	ENSGT00940000154861.n.a
Coho salmon	MODERN SPECIES		MYBL2 (ENSOKIG00005001420)	rpn2 (ENSOKIG00005001481)	ENSOKIG00005001557	ENSOKIG00005001565	ENSOKIG00005001578	ENSOKIG00005001586	ENSOKIG00005001615	cntn4 (ENSOKIG00005001800)	ENSOKIG00005003652 ##11	ENSOKIG00005006688	ENSOKIG00005010875 ##11	pdzrn3b (ENSOKIG00005010911) #18	ppp4r2b (ENSOKIG00005010978)	gxylt2 (ENSOKIG00005011018) #20	ENSOKIG00005011034	RYBP (ENSOKIG00005011042) #22	ENSOKIG00005011059	gpr27 (ENSOKIG00005011072) #24	EIF4E3 (ENSOKIG00005011081) #25	foxp1b (ENSOKIG00005011174)	mdfic2 (ENSOKIG00005012150) #27	zgc:113054 (ENSOKIG00005012160)	mitfa (ENSOKIG00005012208) #28	FRMD4B (ENSOKIG00005012358) #29	arl6ip5a (ENSOKIG00005012491) #16	trnt1 (ENSOKIG00005012500) #9	ENSOKIG00005012512	lrrn1 (ENSOKIG00005012515)	setmar (ENSOKIG00005012520)	ITPR1 (ENSOKIG00005012584)	bhlhe40 (ENSOKIG00005012956)
Chinook salmon	MODERN SPECIES	11	rpn2 (ENSOTSG00005022542)	ENSOTSG00005022540	ENSOTSG00005022431	ENSOTSG00005022429	ENSOTSG00005022428	ENSOTSG00005022408	cntn4 (ENSOTSG00005016608)	ENSOTSG00005016602	CNTN4 (ENSOTSG00005010550) ##11	ENSOTSG00005004272	ENSOTSG00005004237 ##11	ENSOTSG00005004235 ##11	pdzrn3b (ENSOTSG00005004234) #18	ppp4r2b (ENSOTSG00005004231)	gxylt2 (ENSOTSG00005004230) #20	RYBP (ENSOTSG00005004229) #22	gpr27 (ENSOTSG00005004228) #24	EIF4E3 (ENSOTSG00005004227) #25	foxp1b (ENSOTSG00005002056)	zgc:113054 (ENSOTSG00005002048)	mitfa (ENSOTSG00005001922) #28	FRMD4B (ENSOTSG00005001893) #29	arl6ip5a (ENSOTSG00005001888) #16	trnt1 (ENSOTSG00005001883) #9	ENSOTSG00005001880	lrrn1 (ENSOTSG00005001879)	setmar (ENSOTSG00005001878)	ITPR1 (ENSOTSG00005001228)	bhlhe40 (ENSOTSG00005001151)	arl8bb (ENSOTSG00005001141)	SEMA3F (ENSOTSG00005000749)
Rainbow trout	MODERN SPECIES	8	lbp/bpi-2 (ENSOMYG00000042849)	ENSOMYG00000042836	ENSOMYG00000042833	ENSOMYG00000042830	ENSOMYG00000057673	ENSOMYG00000042824	cntn4 (ENSOMYG00000038930)	ENSOMYG00000030724 ##11	ENSOMYG00000027763	ENSOMYG00000027186 ##11	ENSOMYG00000066808	pdzrn3b (ENSOMYG00000027116) #18	ppp4r2b (ENSOMYG00000027058)	gxylt2 (ENSOMYG00000027027) #20	ENSOMYG00000027011	RYBP (ENSOMYG00000058096) #22	prok2 (ENSOMYG00000026926)	gpr27 (ENSOMYG00000026893) #24	EIF4E3 (ENSOMYG00000026861) #25	ENSOMYG00000026823	ENSOMYG00000068868	foxp1b (ENSOMYG00000026154)	mdfic2 (ENSOMYG00000026023) #27	zgc:113054 (ENSOMYG00000025999)	mitfa (ENSOMYG00000025566) #28	ENSOMYG00000049451	FRMD4B (ENSOMYG00000025031) #29	arl6ip5a (ENSOMYG00000024815) #16	trnt1 (ENSOMYG00000024790) #9	ENSOMYG00000024756	lrrn1 (ENSOMYG00000024735)
Salmo	ANCESTRAL SPECIES	33	ENSGT00940000156091.b.g	ENSGT00390000002635.d	ENSGT01100000263515.a.b.a.b.a.g	ENSGT01100000263545.a.b.c.a.r	ENSGT00940000163346.a.j	ENSGT01060000248883.a.a.a.a	ENSGT00940000158442.l	ENSGT00940000164786.a.g.b	ENSGT00940000155198.B.h ##11	ENSGT00940000165371.a.f	ENSGT00940000155198.A.f.b ##11	ENSGT00950000183062.a.a.a.b #18	ENSGT00940000162859.o.f	ENSGT00940000158065.f #20	ENSGT00940000177762	ENSGT00390000013995.b.a.ab #22	ENSGT00940000167138.a	ENSGT00890000139436.A.a.b #24	ENSGT00940000155865.c.b #25	ENSGT00940000165920.b.c	ENSGT00730000111641.b #27	ENSGT00940000165309.e.a	ENSGT00940000156326.a.b.c #28	ENSGT01020000230354.A.a.a.d #29	ENSGT00390000008631.a.o.a.b #16	ENSGT00390000009678.e #9	ENSGT01050000244882.b.c.a.a.c	ENSGT00940000157154.d.f	ENSGT00940000162663.c	ENSGT00940000155071.C.e	ENSGT00940000158384.d.d
Atlantic salmon	MODERN SPECIES	3	ENSSSAG00000110673	ENSSSAG00000083264	ENSSSAG00000111876	ENSSSAG00000080978	cntn4 (ENSSSAG00000080512)	ENSSSAG00000090029	ENSSSAG00000079074 ##11	ENSSSAG00000078592	ENSSSAG00000078091 ##11	ENSSSAG00000078049	pdzrn3b (ENSSSAG00000103526) #18	ENSSSAG00000098079	ppp4r2b (ENSSSAG00000086913)	gxylt2 (ENSSSAG00000082451) #20	ENSSSAG00000077990	RYBP (ENSSSAG00000112642) #22	prok2 (ENSSSAG00000077970)	gpr27 (ENSSSAG00000090342) #24	EIF4E3 (ENSSSAG00000118265) #25	ENSSSAG00000111237	foxp1b (ENSSSAG00000077724)	mdfic2 (ENSSSAG00000077706) #27	zgc:113054 (ENSSSAG00000077695)	mitfa (ENSSSAG00000077659) #28	FRMD4B (ENSSSAG00000077601) #29	arl6ip5a (ENSSSAG00000077595) #16	TRNT1 (ENSSSAG00000077584) #9	ENSSSAG00000077580	lrrn1 (ENSSSAG00000098200)	setmar (ENSSSAG00000077574)	ENSSSAG00000112671
River trout	MODERN SPECIES	5	mybl2b (ENSSTUG00000001451)	rpn2 (ENSSTUG00000001495)	ENSSTUG00000001639	ENSSTUG00000001658	ENSSTUG00000001724	ENSSTUG00000001732	ENSSTUG00000001843	cntn4 (ENSSTUG00000003421)	ENSSTUG00000007621 ##11	ENSSTUG00000010027	ENSSTUG00000014263 ##11	pdzrn3b (ENSSTUG00000014367) #18	ppp4r2b (ENSSTUG00000014392)	gxylt2 (ENSSTUG00000014423) #20	ENSSTUG00000014447	RYBP (ENSSTUG00000014455) #22	prok2 (ENSSTUG00000014470)	gpr27 (ENSSTUG00000014479) #24	EIF4E3 (ENSSTUG00000014483) #25	foxp1b (ENSSTUG00000014503)	mdfic2 (ENSSTUG00000014882) #27	zgc:113054 (ENSSTUG00000014888)	mitfa (ENSSTUG00000014914) #28	FRMD4B (ENSSTUG00000015084) #29	arl6ip5a (ENSSTUG00000015266) #16	trnt1 (ENSSTUG00000015279) #9	ENSSTUG00000015291	lrrn1 (ENSSTUG00000015297)	setmar (ENSSTUG00000015300)	ITPR1 (ENSSTUG00000015338)	bhlhe40 (ENSSTUG00000015789)
Huchen	DUPLICATION
Huchen	MODERN SPECIES	816												ENSHHUG00000050559	gxylt2 (ENSHHUG00000050564) #20	ENSHHUG00000050566	ENSHHUG00000050576	ENSHHUG00000050577 #22	prok2 (ENSHHUG00000050580)	gpr27 (ENSHHUG00000050587) #24	EIF4E3 (ENSHHUG00000050590) #25	foxp1b (ENSHHUG00000050602)
Huchen	MODERN SPECIES	280							EPB41L1 (ENSHHUG00000033246)	cntn4 (ENSHHUG00000032456)	ENSHHUG00000032379 ##11	ENSHHUG00000031684	ENSHHUG00000031255 ##11	pdzrn3b (ENSHHUG00000031233) #18	ppp4r2b (ENSHHUG00000031212)	gxylt2 (ENSHHUG00000031203) #20	shq1 (ENSHHUG00000031198) #21	RYBP (ENSHHUG00000031196) #22	prok2 (ENSHHUG00000031137)	gpr27 (ENSHHUG00000031127) #24	ENSHHUG00000031123
Northern pike	MODERN SPECIES	16	ENSELUG00000024557	ENSELUG00000002887	ENSELUG00000002906	EPB41L1 (ENSELUG00000003026)	cntn4 (ENSELUG00000003143)	CNTN4 (ENSELUG00000003279) ##11	ENSELUG00000003353	ENSELUG00000003398 ##11	ENSELUG00000025303	ENSELUG00000003407	ENSELUG00000032197	pdzrn3b (ENSELUG00000003425) #18	ppp4r2b (ENSELUG00000003437)	gxylt2 (ENSELUG00000003451) #20	shq1 (ENSELUG00000003476) #21	rybpa (ENSELUG00000003503) #22	prok2 (ENSELUG00000003525)	EIF4E3 (ENSELUG00000003543) #25	foxp1b (ENSELUG00000003572)	mdfic2 (ENSELUG00000003599) #27	zgc:113054 (ENSELUG00000003610)	mitfa (ENSELUG00000003651) #28	FRMD4B (ENSELUG00000003740) #29	praf3 (ENSELUG00000003790) #16	trnt1 (ENSELUG00000003802) #9	ENSELUG00000028972	lrrn1 (ENSELUG00000003813)	setmar (ENSELUG00000003826)	ITPR1 (ENSELUG00000003888)	bhlhe40 (ENSELUG00000001165)	arl8bb (ENSELUG00000003984)
Spotted gar	MODERN SPECIES	671	eif3s10 (ENSLOCG00000009729)	dennd10 (ENSLOCG00000009752)	sfxn4 (ENSLOCG00000009759)	prdx3 (ENSLOCG00000009763)	SRGAP3 (ENSLOCG00000009772)	thumpd3 (ENSLOCG00000009800)	cntn4 (ENSLOCG00000009813)	ENSLOCG00000009835 ##11	ENSLOCG00000009860	ENSLOCG00000009897 ##11	pdzrn3b (ENSLOCG00000009917) #18	ENSLOCG00000009926	ppp4r2b (ENSLOCG00000009942)	gxylt2 (ENSLOCG00000009958) #20	shq1 (ENSLOCG00000009970) #21	rybpa (ENSLOCG00000009980) #22	ENSLOCG00000018244	prok2 (ENSLOCG00000009991)	gpr27 (ENSLOCG00000018245) #24	eif4e3 (ENSLOCG00000010001) #25	foxp1b (ENSLOCG00000010009)	mdfic2 (ENSLOCG00000010038) #27	zgc:113054 (ENSLOCG00000010041)	ENSLOCG00000010050	mitfb (ENSLOCG00000010058) #28	FRMD4B (ENSLOCG00000010065) #29	LMOD3 (ENSLOCG00000010083)	arl6ip5b (ENSLOCG00000010101) #16	uba3 (ENSLOCG00000010113)	tmf1 (ENSLOCG00000010119)	EOGT (ENSLOCG00000010125)
Elephant shark	MODERN SPECIES	1523	TAFA4 (ENSCMIG00000007000)	EOGT (ENSCMIG00000007011)	tmf1 (ENSCMIG00000007054)	uba3 (ENSCMIG00000007150)	arl6ip5b (ENSCMIG00000007190) #16	LMOD3 (ENSCMIG00000007192)	FRMD4B (ENSCMIG00000007196) #29	mitfb (ENSCMIG00000007207) #28	flot1b (ENSCMIG00000007219)	FOXP1 (ENSCMIG00000007232) #26	CNTN4 (ENSCMIG00000007260) #11	pdzrn3b (ENSCMIG00000007350) #18	ENSCMIG00000007355	gxylt2 (ENSCMIG00000007364) #20	shq1 (ENSCMIG00000007369) #21	rybpb (ENSCMIG00000007373) #22	ENSCMIG00000007375	gpr27 (ENSCMIG00000007378) #24	eif4e3 (ENSCMIG00000007381) #25	ENSCMIG00000007385
Cyclostomata	ANCESTRAL SPECIES	204															ENSGT00940000162859	ENSGT00390000013995.b.a #22	ENSGT00530000064100
Lamprey	MODERN SPECIES	419														ENSPMAG00000006755 ##11	ENSPMAG00000006744	ENSPMAG00000006736 #22	rbbp5 (ENSPMAG00000006716)
Hagfish	MODERN SPECIES	403											ENSEBUG00000008713	ENSEBUG00000008626	ENSEBUG00000010245	fam3c (ENSEBUG00000009355)	ENSEBUG00000005872	RYBP (ENSEBUG00000010088) #22	rbbp5 (ENSEBUG00000009691)	ENSEBUG00000002744	ENSEBUG00000002447	ENSEBUG00000011760	ENSEBUG00000000564	ENSEBUG00000001265	ENSEBUG00000003340	ENSEBUG00000014198	ENSEBUG00000004105	ENSEBUG00000005757	ENSEBUG00000013064	ENSEBUG00000011123	ENSEBUG00000010976	ENSEBUG00000000389	ENSEBUG00000006309