Vertebrata	DUPLICATION
Vertebrata	DUPLICATION
Vertebrata	ANCESTRAL SPECIES																	ENSGT00390000005639.a.b #22
Gnathostomata	ANCESTRAL SPECIES	1023																ENSGT00390000005639.a.b #22	ENSGT00530000063586.a	ENSGT00940000158782
Euteleostomi	ANCESTRAL SPECIES	141															ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00950000183109.c.a.a	ENSGT00940000155588.b	ENSGT00390000015849	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b	ENSGT00940000154418.a.a
Sarcopterygii	ANCESTRAL SPECIES	318															ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32
Tetrapoda	ANCESTRAL SPECIES	39	ENSGT00530000063604.A	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT01100000263518.A.b	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00940000162611.b	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000164095	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B
Amniota	ANCESTRAL SPECIES	10	ENSGT00530000063604.A	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT01100000263518.A.b	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00940000162611.b	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000164095	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B
Mammalia	ANCESTRAL SPECIES	14	ENSGT01030000234641.b.a.a	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Theria	ANCESTRAL SPECIES	26	ENSGT01030000234641.b.a.a	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00990000203892
Eutheria	ANCESTRAL SPECIES	13	ENSGT01030000234641.b.a.a	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Boreoeutheria	ANCESTRAL SPECIES	16	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT01100000267139	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00960000190004	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Euarchontoglires	ANCESTRAL SPECIES	16	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT01100000267139	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092.a.a ##20	ENSGT00960000190004	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Primates	ANCESTRAL SPECIES	16	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092.a.b ##20	ENSGT00960000190004	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Haplorrhini	ANCESTRAL SPECIES	11	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092.a.b ##20	ENSGT00960000190004	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Simiiformes	ANCESTRAL SPECIES	17	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00960000190004	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00990000203892
Platyrrhini	ANCESTRAL SPECIES	14	ENSGT00910000147323	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796.g.b #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00990000203892
Cebidae	ANCESTRAL SPECIES	17	ENSGT01030000234641.b.a.a	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796.g.b #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Cebidae_a	ANCESTRAL SPECIES	13	ENSGT01030000234641.b.a.a	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000002554 #24	ENSGT00390000005532.e.b.e #25	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796.g.b #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Capuchin	MODERN SPECIES	71	ARL3 (ENSCCAG00000028563) #7	TRIM8 (ENSCCAG00000033738) #8	SUFU (ENSCCAG00000024592) #9	ENSCCAG00000035649 #10	ACTR1A (ENSCCAG00000022008) #11	ENSCCAG00000030377 #12	CUEDC2 (ENSCCAG00000031794) #13	FBXL15 (ENSCCAG00000035564) #14	PSD (ENSCCAG00000018781) #15	NFKB2 (ENSCCAG00000036762) #16	GBF1 (ENSCCAG00000035570) #17	PITX3 (ENSCCAG00000024206) #18	ELOVL3 (ENSCCAG00000030858) #19	NOLC1 (ENSCCAG00000031293) #20	PPRC1 (ENSCCAG00000014910) #21	LDB1 (ENSCCAG00000032351) #22	ENSCCAG00000019492 #23	ARMH3 (ENSCCAG00000030229) #24	ENSCCAG00000021166 #25	KCNIP2 (ENSCCAG00000020733) #26	OGA (ENSCCAG00000035955) #27	ENSCCAG00000031043 #28	FGF8 (ENSCCAG00000028398) #29	FBXW4 (ENSCCAG00000015377) #30	DPCD (ENSCCAG00000031078) #31	POLL (ENSCCAG00000021549) #32	BTRC (ENSCCAG00000028586) #33	TYROBP (ENSCCAG00000030200) #34	LBX1 (ENSCCAG00000027225) #35	ENSCCAG00000018927 #36	TLX1 (ENSCCAG00000022529) #37
Bolivian squirrel monkey	MODERN SPECIES	47	SFXN2 (ENSSBOG00000026232)	ARL3 (ENSSBOG00000030806) #7	TRIM8 (ENSSBOG00000024105) #8	SUFU (ENSSBOG00000027977) #9	ACTR1A (ENSSBOG00000019736) #11	MFSD13A (ENSSBOG00000022135)	CUEDC2 (ENSSBOG00000033427) #13	FBXL15 (ENSSBOG00000024265) #14	PSD (ENSSBOG00000025518) #15	NFKB2 (ENSSBOG00000027266) #16	GBF1 (ENSSBOG00000021062) #17	ENSSBOG00000016252 #18	ELOVL3 (ENSSBOG00000028586) #19	NOLC1 (ENSSBOG00000031205) #20	PPRC1 (ENSSBOG00000021902) #21	LDB1 (ENSSBOG00000029453) #22	ARMH3 (ENSSBOG00000027965) #24	ENSSBOG00000028614 #25	KCNIP2 (ENSSBOG00000029268) #26	OGA (ENSSBOG00000024431) #27	NPM3 (ENSSBOG00000027661) #28	FGF8 (ENSSBOG00000026891) #29	ENSSBOG00000026520	FBXW4 (ENSSBOG00000036214) #30	DPCD (ENSSBOG00000024659) #31	POLL (ENSSBOG00000035823) #32	BTRC (ENSSBOG00000034480) #33	LBX1 (ENSSBOG00000026504) #35	ENSSBOG00000030742 #37	KAZALD1 (ENSSBOG00000032715)	SFXN3 (ENSSBOG00000032559)
Marmoset	MODERN SPECIES	3	ENSCJAG00000078286	SUFU (ENSCJAG00000018029) #9	ACTR1A (ENSCJAG00000018011) #11	C10orf95 (ENSCJAG00000048294)	MFSD13A (ENSCJAG00000018006)	CUEDC2 (ENSCJAG00000065966) #13	FBXL15 (ENSCJAG00000017990) #14	PSD (ENSCJAG00000017941) #15	NFKB2 (ENSCJAG00000017928) #16	GBF1 (ENSCJAG00000017861) #17	PITX3 (ENSCJAG00000017858) #18	ELOVL3 (ENSCJAG00000079228) #19	ENSCJAG00000082055	NOLC1 (ENSCJAG00000017832) #20	PPRC1 (ENSCJAG00000017812) #21	LDB1 (ENSCJAG00000017777) #22	HPS6 (ENSCJAG00000022973)	ENSCJAG00000056816	ARMH3 (ENSCJAG00000017743) #24	KCNIP2 (ENSCJAG00000017676) #26	OGA (ENSCJAG00000017657) #27	NPM3 (ENSCJAG00000017650) ##28	FGF8 (ENSCJAG00000084172) #29	FBXW4 (ENSCJAG00000017627) #30	DPCD (ENSCJAG00000017614) #31	POLL (ENSCJAG00000017600) #32	BTRC (ENSCJAG00000017573) #33	LBX1 (ENSCJAG00000017569) #35	ENSCJAG00000087194	TLX1 (ENSCJAG00000017563) #37	KAZALD1 (ENSCJAG00000017554)
Mas night monkey	MODERN SPECIES	658	ARL3 (ENSANAG00000027007) #7	ENSANAG00000026371	TRIM8 (ENSANAG00000021560) #8	SUFU (ENSANAG00000036277) #9	ACTR1A (ENSANAG00000033970) #11	MFSD13A (ENSANAG00000032765)	C10orf95 (ENSANAG00000032530)	CUEDC2 (ENSANAG00000038457) #13	FBXL15 (ENSANAG00000005171) #14	PSD (ENSANAG00000020954) #15	NFKB2 (ENSANAG00000038091) #16	GBF1 (ENSANAG00000028077) #17	PITX3 (ENSANAG00000023017) #18	ELOVL3 (ENSANAG00000037453) #19	PPRC1 (ENSANAG00000029448) #21	LDB1 (ENSANAG00000034893) #22	ENSANAG00000019621 #25	ARMH3 (ENSANAG00000029091) #24	KCNIP2 (ENSANAG00000020362) #26	OGA (ENSANAG00000034639) #27	ENSANAG00000027082 #28	FGF8 (ENSANAG00000031951) #29	FBXW4 (ENSANAG00000034872) #30	DPCD (ENSANAG00000036663) #31	POLL (ENSANAG00000021199) #32	BTRC (ENSANAG00000035347) #33	LBX1 (ENSANAG00000036814) #35	TLX1 (ENSANAG00000027104) #37	KAZALD1 (ENSANAG00000020414)	SFXN3 (ENSANAG00000035635)	ENSANAG00000021408
Catarrhini	ANCESTRAL SPECIES	18	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00960000190004	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00990000203892
Hominoidea	ANCESTRAL SPECIES	11	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782.s #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00960000190004	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00910000147806	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a
Hominidae	ANCESTRAL SPECIES	13	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782.s #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00960000190004	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00910000147806	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	17	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782.s #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00960000190004	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029.c #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00910000147806	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a
Homo/Pan group	ANCESTRAL SPECIES	18	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782.s #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00960000190004	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029.c #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Pan	ANCESTRAL SPECIES	16	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782.s #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00960000190004	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029.c #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Chimpanzee	MODERN SPECIES	1	ARL3 (ENSPTRG00000045593) #7	TRIM8 (ENSPTRG00000002896) #8	SUFU (ENSPTRG00000002895) #9	ACTR1A (ENSPTRG00000002894) #11	MFSD13A (ENSPTRG00000002893)	C10H10orf95 (ENSPTRG00000045273)	CUEDC2 (ENSPTRG00000002891) #13	FBXL15 (ENSPTRG00000002890) #14	PSD (ENSPTRG00000002889) #15	NFKB2 (ENSPTRG00000002888) #16	GBF1 (ENSPTRG00000002887) #17	PITX3 (ENSPTRG00000002886) #18	ELOVL3 (ENSPTRG00000002885) #19	NOLC1 (ENSPTRG00000023882) #20	PPRC1 (ENSPTRG00000002883) #21	LDB1 (ENSPTRG00000023411) #22	HPS6 (ENSPTRG00000002881)	ARMH3 (ENSPTRG00000002879) #24	KCNIP2 (ENSPTRG00000002878) #26	OGA (ENSPTRG00000002876) #27	NPM3 (ENSPTRG00000002875) #28	FGF8 (ENSPTRG00000002874) #29	FBXW4 (ENSPTRG00000048959) #30	DPCD (ENSPTRG00000002871) #31	POLL (ENSPTRG00000002870) #32	BTRC (ENSPTRG00000002869) #33	LBX1 (ENSPTRG00000002868) #35	TLX1 (ENSPTRG00000002867) #37	KAZALD1 (ENSPTRG00000002865)	SFXN3 (ENSPTRG00000002864)	PDZD7 (ENSPTRG00000002862)
Bonobo	MODERN SPECIES	1	ARL3 (ENSPPAG00000034961) #7	TRIM8 (ENSPPAG00000030577) #8	SUFU (ENSPPAG00000028891) #9	ACTR1A (ENSPPAG00000030539) #11	MFSD13A (ENSPPAG00000000308)	CUEDC2 (ENSPPAG00000013700) #13	FBXL15 (ENSPPAG00000041099) #14	PSD (ENSPPAG00000040288) #15	NFKB2 (ENSPPAG00000030613) #16	GBF1 (ENSPPAG00000042922) #17	ENSPPAG00000008353 #18	ELOVL3 (ENSPPAG00000040688) #19	ENSPPAG00000043390	NOLC1 (ENSPPAG00000038082) #20	PPRC1 (ENSPPAG00000032544) #21	LDB1 (ENSPPAG00000024094) #22	HPS6 (ENSPPAG00000011993)	ARMH3 (ENSPPAG00000040734) #24	KCNIP2 (ENSPPAG00000029455) #26	OGA (ENSPPAG00000030424) #27	NPM3 (ENSPPAG00000040517) #28	FGF8 (ENSPPAG00000039985) #29	ENSPPAG00000025691 #30	DPCD (ENSPPAG00000038194) #31	POLL (ENSPPAG00000036999) #32	BTRC (ENSPPAG00000034237) #33	TLX1 (ENSPPAG00000040366) #37	KAZALD1 (ENSPPAG00000029890)	SFXN3 (ENSPPAG00000029879)	PDZD7 (ENSPPAG00000036974)	LZTS2 (ENSPPAG00000003235)
Human	MODERN SPECIES	1	ARL3 (ENSG00000138175) #7	TRIM8 (ENSG00000171206) #8	SUFU (ENSG00000107882) #9	ACTR1A (ENSG00000138107) #11	MFSD13A (ENSG00000138111)	C10orf95 (ENSG00000120055)	CUEDC2 (ENSG00000107874) #13	FBXL15 (ENSG00000107872) #14	PSD (ENSG00000059915) #15	NFKB2 (ENSG00000077150) #16	GBF1 (ENSG00000107862) #17	PITX3 (ENSG00000107859) #18	ELOVL3 (ENSG00000119915) #19	NOLC1 (ENSG00000166197) #20	PPRC1 (ENSG00000148840) #21	LDB1 (ENSG00000198728) #22	HPS6 (ENSG00000166189)	ARMH3 (ENSG00000120029) #24	KCNIP2 (ENSG00000120049) #26	OGA (ENSG00000198408) #27	NPM3 (ENSG00000107833) #28	FGF8 (ENSG00000107831) #29	FBXW4 (ENSG00000107829) #30	POLL (ENSG00000166169) #32	DPCD (ENSG00000166171) #31	BTRC (ENSG00000166167) #33	LBX1 (ENSG00000138136) #35	TLX1 (ENSG00000107807) #37	KAZALD1 (ENSG00000107821)	SFXN3 (ENSG00000107819)	PDZD7 (ENSG00000186862)
Gorilla	MODERN SPECIES	1	ARL3 (ENSGGOG00000003895) #7	TRIM8 (ENSGGOG00000003887) #8	SUFU (ENSGGOG00000011242) #9	ACTR1A (ENSGGOG00000011237) #11	MFSD13A (ENSGGOG00000011231)	C10orf95 (ENSGGOG00000000806)	CUEDC2 (ENSGGOG00000006994) #13	FBXL15 (ENSGGOG00000006993) #14	PSD (ENSGGOG00000006985) #15	NFKB2 (ENSGGOG00000006971) #16	GBF1 (ENSGGOG00000006948) #17	PITX3 (ENSGGOG00000026128) #18	ELOVL3 (ENSGGOG00000024219) #19	NOLC1 (ENSGGOG00000002158) #20	PPRC1 (ENSGGOG00000002155) #21	LDB1 (ENSGGOG00000002151) #22	HPS6 (ENSGGOG00000008892)	ARMH3 (ENSGGOG00000006539) #24	KCNIP2 (ENSGGOG00000006534) #26	OGA (ENSGGOG00000002901) #27	NPM3 (ENSGGOG00000027500) #28	FGF8 (ENSGGOG00000015108) #29	ENSGGOG00000005039 #30	DPCD (ENSGGOG00000005035) #31	POLL (ENSGGOG00000005029) #32	ENSGGOG00000038754	BTRC (ENSGGOG00000005023) #33	LBX1 (ENSGGOG00000012521) #35	TLX1 (ENSGGOG00000005880) #37	KAZALD1 (ENSGGOG00000004516)	SFXN3 (ENSGGOG00000015442)
Orangutan	MODERN SPECIES	1	TRIM8 (ENSPPYG00000002607) #8	ENSPPYG00000033083	SUFU (ENSPPYG00000002606) #9	ACTR1A (ENSPPYG00000002605) #11	MFSD13A (ENSPPYG00000002604)	C10orf95 (ENSPPYG00000002603)	CUEDC2 (ENSPPYG00000002602) #13	ENSPPYG00000002601 #14	NFKB2 (ENSPPYG00000002599) #16	PSD (ENSPPYG00000002600) #15	GBF1 (ENSPPYG00000002598) #17	ENSPPYG00000002597 #18	ELOVL3 (ENSPPYG00000002596) #19	NOLC1 (ENSPPYG00000002595) #20	PPRC1 (ENSPPYG00000002594) #21	LDB1 (ENSPPYG00000002593) #22	HPS6 (ENSPPYG00000030981)	ARMH3 (ENSPPYG00000002592) #24	KCNIP2 (ENSPPYG00000002591) #26	OGA (ENSPPYG00000002590) #27	NPM3 (ENSPPYG00000002589) #28	FGF8 (ENSPPYG00000002588) #29	ENSPPYG00000002587	FBXW4 (ENSPPYG00000002586) #30	DPCD (ENSPPYG00000002585) #31	POLL (ENSPPYG00000002584) #32	BTRC (ENSPPYG00000002583) #33	LBX1 (ENSPPYG00000002582) #35	TLX1 (ENSPPYG00000002581) #37	KAZALD1 (ENSPPYG00000002580)	SFXN3 (ENSPPYG00000002579)
Gibbon	MODERN SPECIES	18	SFXN2 (ENSNLEG00000033903)	ARL3 (ENSNLEG00000015183) #7	TRIM8 (ENSNLEG00000015181) #8	SUFU (ENSNLEG00000015166) #9	ACTR1A (ENSNLEG00000015157) #11	MFSD13A (ENSNLEG00000015151)	CUEDC2 (ENSNLEG00000027134) #13	FBXL15 (ENSNLEG00000015140) #14	ENSNLEG00000015114 #15	NFKB2 (ENSNLEG00000015079) #16	GBF1 (ENSNLEG00000015044) #17	PITX3 (ENSNLEG00000015040) #18	ELOVL3 (ENSNLEG00000015039) #19	NOLC1 (ENSNLEG00000015012) #20	PPRC1 (ENSNLEG00000014996) #21	LDB1 (ENSNLEG00000014982) #22	HPS6 (ENSNLEG00000019112)	ARMH3 (ENSNLEG00000014964) #24	ENSNLEG00000030076	ENSNLEG00000014924 #26	OGA (ENSNLEG00000014902) #27	ENSNLEG00000029281 #28	FGF8 (ENSNLEG00000014890) #29	ENSNLEG00000014885 #30	DPCD (ENSNLEG00000014878) #31	POLL (ENSNLEG00000014861) #32	BTRC (ENSNLEG00000014843) #33	ENSNLEG00000028284	LBX1 (ENSNLEG00000014840) #35	TLX1 (ENSNLEG00000029481) #37	KAZALD1 (ENSNLEG00000035599)
Cercopithecidae	ANCESTRAL SPECIES	15	ENSGT00940000155737.b #7	ENSGT00910000147323	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00990000203892
Cercopithecinae	ANCESTRAL SPECIES	15	ENSGT00940000155737.b #7	ENSGT00910000147323	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00990000203892
Vervet Monkey	MODERN SPECIES	28	SFXN2 (ENSCSAG00000005403)	ARL3 (ENSCSAG00000005408) #7	TRIM8 (ENSCSAG00000005411) #8	SUFU (ENSCSAG00000005416) #9	ACTR1A (ENSCSAG00000005419) #11	MFSD13A (ENSCSAG00000005428)	FBXL15 (ENSCSAG00000005432) #14	CUEDC2 (ENSCSAG00000005434) #13	PSD (ENSCSAG00000005438) #15	NFKB2 (ENSCSAG00000005442) #16	GBF1 (ENSCSAG00000005450) #17	PITX3 (ENSCSAG00000005456) #18	ELOVL3 (ENSCSAG00000005460) #19	NOLC1 (ENSCSAG00000005465) #20	PPRC1 (ENSCSAG00000005471) #21	LDB1 (ENSCSAG00000005474) #22	HPS6 (ENSCSAG00000018450)	ARMH3 (ENSCSAG00000005491) #24	KCNIP2 (ENSCSAG00000005501) #26	OGA (ENSCSAG00000005507) #27	NPM3 (ENSCSAG00000005509) #28	FGF8 (ENSCSAG00000005512) #29	FBXW4 (ENSCSAG00000005515) #30	DPCD (ENSCSAG00000005519) #31	POLL (ENSCSAG00000005523) #32	BTRC (ENSCSAG00000005528) #33	LBX1 (ENSCSAG00000005532) #35	TLX1 (ENSCSAG00000005535) #37	KAZALD1 (ENSCSAG00000005540)	SFXN3 (ENSCSAG00000005542)	ENSCSAG00000005544
Cercopithecinae_a	ANCESTRAL SPECIES	14	ENSGT00940000155737.b #7	ENSGT00910000147323	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00990000203892
Macaca	ANCESTRAL SPECIES	11	ENSGT00940000155737.b #7	ENSGT00910000147323	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a.m	ENSGT00950000183002.C
Macaca_a	ANCESTRAL SPECIES	13	ENSGT00940000155737.b #7	ENSGT00910000147323	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT01100000263577.a.a.b.b.a.a.b.a.a.a.a	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a.m
Rhesus	MODERN SPECIES	19	BORCS7 (ENSMMUG00000007660)	CYP17A1 (ENSMMUG00000017601)	SFXN2 (ENSMMUG00000052989)	ARL3 (ENSMMUG00000060039) #7	ENSMMUG00000047000	TRIM8 (ENSMMUG00000004394) #8	SUFU (ENSMMUG00000004396) #9	ACTR1A (ENSMMUG00000011949) #11	MFSD13A (ENSMMUG00000011948)	ENSMMUG00000003000 #13	GBF1 (ENSMMUG00000002985) #17	PITX3 (ENSMMUG00000056167) #18	ELOVL3 (ENSMMUG00000022752) #19	NOLC1 (ENSMMUG00000001183) #20	PPRC1 (ENSMMUG00000001186) #21	LDB1 (ENSMMUG00000009375) #22	ENSMMUG00000056725	HPS6 (ENSMMUG00000009374)	ARMH3 (ENSMMUG00000001539) #24	KCNIP2 (ENSMMUG00000015776) #26	OGA (ENSMMUG00000015775) #27	NPM3 (ENSMMUG00000015774) #28	FGF8 (ENSMMUG00000015771) #29	FBXW4 (ENSMMUG00000052198) #30	DPCD (ENSMMUG00000006751) #31	POLL (ENSMMUG00000006747) #32	BTRC (ENSMMUG00000006741) #33	LBX1 (ENSMMUG00000060144) #35	TLX1 (ENSMMUG00000017667) #37	KAZALD1 (ENSMMUG00000017668)	SFXN3 (ENSMMUG00000022620)
Crab-eating macaque	MODERN SPECIES	19	ARL3 (ENSMFAG00000057536) #7	TRIM8 (ENSMFAG00000046181) #8	SUFU (ENSMFAG00000038634) #9	ACTR1A (ENSMFAG00000041926) #11	MFSD13A (ENSMFAG00000041523)	CUEDC2 (ENSMFAG00000035328) #13	FBXL15 (ENSMFAG00000033584) #14	PSD (ENSMFAG00000000282) #15	NFKB2 (ENSMFAG00000031139) #16	ENSMFAG00000047401	GBF1 (ENSMFAG00000002812) #17	PITX3 (ENSMFAG00000045143) #18	ELOVL3 (ENSMFAG00000036362) #19	NOLC1 (ENSMFAG00000044654) #20	ENSMFAG00000038589 #21	LDB1 (ENSMFAG00000041257) #22	ENSMFAG00000061163	ENSMFAG00000051632	ARMH3 (ENSMFAG00000044833) #24	KCNIP2 (ENSMFAG00000046056) #26	OGA (ENSMFAG00000032188) #27	NPM3 (ENSMFAG00000041878) #28	FGF8 (ENSMFAG00000003751) #29	FBXW4 (ENSMFAG00000044810) #30	DPCD (ENSMFAG00000036058) #31	POLL (ENSMFAG00000043080) #32	BTRC (ENSMFAG00000005295) #33	TLX1 (ENSMFAG00000045878) #37	KAZALD1 (ENSMFAG00000063924)	SFXN3 (ENSMFAG00000035501)	PDZD7 (ENSMFAG00000037794)
Pig-tailed macaque	MODERN SPECIES	550	ARL3 (ENSMNEG00000041783) #7	ENSMNEG00000020915	TRIM8 (ENSMNEG00000038779) #8	SUFU (ENSMNEG00000034125) #9	ACTR1A (ENSMNEG00000028948) #11	MFSD13A (ENSMNEG00000029124)	CUEDC2 (ENSMNEG00000041547) #13	FBXL15 (ENSMNEG00000037370) #14	PSD (ENSMNEG00000037103) #15	NFKB2 (ENSMNEG00000030201) #16	GBF1 (ENSMNEG00000030880) #17	PITX3 (ENSMNEG00000027087) #18	ELOVL3 (ENSMNEG00000026432) #19	NOLC1 (ENSMNEG00000033199) #20	PPRC1 (ENSMNEG00000031603) #21	LDB1 (ENSMNEG00000039832) #22	HPS6 (ENSMNEG00000003739)	ARMH3 (ENSMNEG00000027491) #24	KCNIP2 (ENSMNEG00000033420) #26	OGA (ENSMNEG00000042719) #27	NPM3 (ENSMNEG00000039999) #28	FGF8 (ENSMNEG00000044546) #29	FBXW4 (ENSMNEG00000007347) #30	DPCD (ENSMNEG00000039583) #31	ENSMNEG00000041174	POLL (ENSMNEG00000032214) #32	BTRC (ENSMNEG00000043926) #33	LBX1 (ENSMNEG00000003768) #35	TLX1 (ENSMNEG00000039702) #37	KAZALD1 (ENSMNEG00000041154)	SFXN3 (ENSMNEG00000041774)
Cercopithecinae_b	ANCESTRAL SPECIES	14	ENSGT00940000155737.b #7	ENSGT00910000147323	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00990000203892
Olive baboon	MODERN SPECIES	2	SFXN2 (ENSPANG00000020991)	ARL3 (ENSPANG00000033639) #7	TRIM8 (ENSPANG00000020989) #8	SUFU (ENSPANG00000020987) #9	ACTR1A (ENSPANG00000020986) #11	MFSD13A (ENSPANG00000020985)	CUEDC2 (ENSPANG00000020984) #13	FBXL15 (ENSPANG00000021009) #14	PSD (ENSPANG00000021011) #15	NFKB2 (ENSPANG00000021013) #16	GBF1 (ENSPANG00000021018) #17	PITX3 (ENSPANG00000021020) #18	ELOVL3 (ENSPANG00000021015) #19	NOLC1 (ENSPANG00000021014) #20	PPRC1 (ENSPANG00000021042) #21	LDB1 (ENSPANG00000021043) #22	HPS6 (ENSPANG00000004207)	ARMH3 (ENSPANG00000021051) #24	KCNIP2 (ENSPANG00000021049) #26	OGA (ENSPANG00000021048) #27	NPM3 (ENSPANG00000021046) #28	FGF8 (ENSPANG00000021045) #29	FBXW4 (ENSPANG00000021059) #30	DPCD (ENSPANG00000021068) #31	POLL (ENSPANG00000021067) #32	BTRC (ENSPANG00000021065) #33	ENSPANG00000045293	LBX1 (ENSPANG00000021064) #35	ENSPANG00000040129	TLX1 (ENSPANG00000021063) #37	KAZALD1 (ENSPANG00000021061)
Cercopithecinae_d	ANCESTRAL SPECIES	57	ENSGT00940000155737.b #7	ENSGT00910000147323	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00990000203892
Sooty mangabey	MODERN SPECIES	598	SFXN2 (ENSCATG00000035934)	ARL3 (ENSCATG00000019333) #7	TRIM8 (ENSCATG00000033750) #8	SUFU (ENSCATG00000039824) #9	ACTR1A (ENSCATG00000036491) #11	MFSD13A (ENSCATG00000032986)	CUEDC2 (ENSCATG00000043008) #13	FBXL15 (ENSCATG00000038266) #14	PSD (ENSCATG00000029120) #15	NFKB2 (ENSCATG00000033674) #16	GBF1 (ENSCATG00000041222) #17	PITX3 (ENSCATG00000035980) #18	ELOVL3 (ENSCATG00000029918) #19	NOLC1 (ENSCATG00000020949) #20	PPRC1 (ENSCATG00000029634) #21	LDB1 (ENSCATG00000041139) #22	HPS6 (ENSCATG00000007175)	ARMH3 (ENSCATG00000044859) #24	KCNIP2 (ENSCATG00000037631) #26	OGA (ENSCATG00000032677) #27	NPM3 (ENSCATG00000013755) #28	FGF8 (ENSCATG00000032104) #29	FBXW4 (ENSCATG00000042023) #30	DPCD (ENSCATG00000015600) #31	POLL (ENSCATG00000030579) #32	BTRC (ENSCATG00000041687) #33	LBX1 (ENSCATG00000015241) #35	TLX1 (ENSCATG00000027146) #37	KAZALD1 (ENSCATG00000012292)	SFXN3 (ENSCATG00000031461)	ENSCATG00000013628
Drill	MODERN SPECIES	660	ARL3 (ENSMLEG00000037047) #7	ENSMLEG00000021573	TRIM8 (ENSMLEG00000039981) #8	SUFU (ENSMLEG00000030702) #9	ACTR1A (ENSMLEG00000040789) #11	MFSD13A (ENSMLEG00000014638)	CUEDC2 (ENSMLEG00000033705) #13	FBXL15 (ENSMLEG00000031428) #14	PSD (ENSMLEG00000007902) #15	NFKB2 (ENSMLEG00000025549) #16	GBF1 (ENSMLEG00000030526) #17	ENSMLEG00000041298 #18	ELOVL3 (ENSMLEG00000042786) #19	NOLC1 (ENSMLEG00000040773) #20	PPRC1 (ENSMLEG00000035092) #21	LDB1 (ENSMLEG00000029239) #22	ARMH3 (ENSMLEG00000040244) #24	KCNIP2 (ENSMLEG00000040604) #26	OGA (ENSMLEG00000034257) #27	NPM3 (ENSMLEG00000038129) #28	FGF8 (ENSMLEG00000038840) #29	FBXW4 (ENSMLEG00000039840) #30	DPCD (ENSMLEG00000036892) #31	POLL (ENSMLEG00000044464) #32	BTRC (ENSMLEG00000037020) #33	LBX1 (ENSMLEG00000038173) #35	TLX1 (ENSMLEG00000036491) #37	KAZALD1 (ENSMLEG00000041241)	SFXN3 (ENSMLEG00000041643)	ENSMLEG00000018361	PDZD7 (ENSMLEG00000044282)
Rhinopithecus	ANCESTRAL SPECIES	11	ENSGT01030000234641.b.a.a	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Black snub-nosed monkey	MODERN SPECIES	1538	SFXN2 (ENSRBIG00000041623)	ARL3 (ENSRBIG00000031934) #7	TRIM8 (ENSRBIG00000032947) #8	SUFU (ENSRBIG00000041782) #9	ACTR1A (ENSRBIG00000035561) #11	ENSRBIG00000044237	CUEDC2 (ENSRBIG00000043930) #13	FBXL15 (ENSRBIG00000042023) #14	PSD (ENSRBIG00000042590) #15	NFKB2 (ENSRBIG00000028068) #16	GBF1 (ENSRBIG00000005903) #17	PITX3 (ENSRBIG00000035684) #18	ELOVL3 (ENSRBIG00000025844) #19	NOLC1 (ENSRBIG00000032216) #20	PPRC1 (ENSRBIG00000027711) #21	LDB1 (ENSRBIG00000023954) #22	HPS6 (ENSRBIG00000021408)	ARMH3 (ENSRBIG00000030224) #24	KCNIP2 (ENSRBIG00000036933) #26	OGA (ENSRBIG00000042557) #27	NPM3 (ENSRBIG00000039086) #28	FGF8 (ENSRBIG00000038141) #29	FBXW4 (ENSRBIG00000029703) #30	DPCD (ENSRBIG00000029630) #31	ENSRBIG00000025168	POLL (ENSRBIG00000034819) #32	BTRC (ENSRBIG00000000373) #33	LBX1 (ENSRBIG00000043576) #35	TLX1 (ENSRBIG00000028309) #37	KAZALD1 (ENSRBIG00000029657)	SFXN3 (ENSRBIG00000033345)
Golden snub-nosed monkey	MODERN SPECIES	3053	SFXN2 (ENSRROG00000028643)	ARL3 (ENSRROG00000030757) #7	TRIM8 (ENSRROG00000030582) #8	SUFU (ENSRROG00000008851) #9	ACTR1A (ENSRROG00000039390) #11	MFSD13A (ENSRROG00000031926)	CUEDC2 (ENSRROG00000044234) #13	FBXL15 (ENSRROG00000033504) #14	PSD (ENSRROG00000041323) #15	NFKB2 (ENSRROG00000034177) #16	GBF1 (ENSRROG00000033162) #17	PITX3 (ENSRROG00000020365) #18	ELOVL3 (ENSRROG00000040217) #19	NOLC1 (ENSRROG00000038056) #20	PPRC1 (ENSRROG00000044599) #21	LDB1 (ENSRROG00000033778) #22	HPS6 (ENSRROG00000015252)	ARMH3 (ENSRROG00000032495) #24	KCNIP2 (ENSRROG00000029744) #26	OGA (ENSRROG00000045455) #27	NPM3 (ENSRROG00000029912) #28	FGF8 (ENSRROG00000038994) #29	FBXW4 (ENSRROG00000038393) #30	ENSRROG00000023920	DPCD (ENSRROG00000044275) #31	POLL (ENSRROG00000032669) #32	BTRC (ENSRROG00000030265) #33	LBX1 (ENSRROG00000044455) #35	TLX1 (ENSRROG00000044869) #37	KAZALD1 (ENSRROG00000028521)	SFXN3 (ENSRROG00000042473)
Tarsier	MODERN SPECIES	3628																LDB1 (ENSTSYG00000027775) #22
Strepsirrhini	ANCESTRAL SPECIES	11	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00990000203892
Lemuriformes	ANCESTRAL SPECIES	7	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00990000203892
Lemuriformes_a	ANCESTRAL SPECIES	21	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00940000166765	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00990000203892
Coquerels sifaka	MODERN SPECIES	870	SFXN2 (ENSPCOG00000024349)	ARL3 (ENSPCOG00000024271) #7	TRIM8 (ENSPCOG00000001337) #8	SUFU (ENSPCOG00000015700) #9	ACTR1A (ENSPCOG00000020914) #11	MFSD13A (ENSPCOG00000003583)	CUEDC2 (ENSPCOG00000028615) #13	FBXL15 (ENSPCOG00000025091) #14	PSD (ENSPCOG00000014657) #15	NFKB2 (ENSPCOG00000024535) #16	GBF1 (ENSPCOG00000027442) #17	PITX3 (ENSPCOG00000018343) #18	ELOVL3 (ENSPCOG00000022173) #19	ENSPCOG00000028588	PPRC1 (ENSPCOG00000025917) #21	LDB1 (ENSPCOG00000014358) #22	ARMH3 (ENSPCOG00000019882) #24	KCNIP2 (ENSPCOG00000024556) #26	OGA (ENSPCOG00000014940) #27	NPM3 (ENSPCOG00000014704) #28	FGF8 (ENSPCOG00000017981) #29	FBXW4 (ENSPCOG00000021206) #30	DPCD (ENSPCOG00000017781) #31	POLL (ENSPCOG00000019314) #32	ENSPCOG00000026908	ENSPCOG00000010924	BTRC (ENSPCOG00000020549) #33	LBX1 (ENSPCOG00000019643) #35	TLX1 (ENSPCOG00000000103) #37	KAZALD1 (ENSPCOG00000016724)	SFXN3 (ENSPCOG00000025511)
Greater bamboo lemur	MODERN SPECIES	1289														NOLC1 (ENSPSMG00000022996) #20	PPRC1 (ENSPSMG00000022903) #21	LDB1 (ENSPSMG00000022814) #22	HPS6 (ENSPSMG00000022801)	ARMH3 (ENSPSMG00000022788) #24	KCNIP2 (ENSPSMG00000022640) #26	OGA (ENSPSMG00000022436) #27	NPM3 (ENSPSMG00000022355) #28	FGF8 (ENSPSMG00000022347) #29
Mouse lemur	MODERN SPECIES	6	SFXN2 (ENSMICG00000012256)	ARL3 (ENSMICG00000012249) #7	TRIM8 (ENSMICG00000031109) #8	SUFU (ENSMICG00000012221) #9	ACTR1A (ENSMICG00000011929) #11	MFSD13A (ENSMICG00000011904)	CUEDC2 (ENSMICG00000043889) #13	FBXL15 (ENSMICG00000042452) #14	PSD (ENSMICG00000011877) #15	NFKB2 (ENSMICG00000011856) #16	GBF1 (ENSMICG00000011832) #17	PITX3 (ENSMICG00000045312) #18	ELOVL3 (ENSMICG00000048136) #19	NOLC1 (ENSMICG00000011811) #20	PPRC1 (ENSMICG00000011794) #21	LDB1 (ENSMICG00000011785) #22	ARMH3 (ENSMICG00000011767) #24	KCNIP2 (ENSMICG00000011754) #26	OGA (ENSMICG00000011745) #27	NPM3 (ENSMICG00000044119) #28	FGF8 (ENSMICG00000011733) #29	FBXW4 (ENSMICG00000030032) #30	DPCD (ENSMICG00000007381) #31	POLL (ENSMICG00000044578) #32	ENSMICG00000032738	BTRC (ENSMICG00000007365) #33	LBX1 (ENSMICG00000042752) #35	TLX1 (ENSMICG00000000020) #37	KAZALD1 (ENSMICG00000042680)	SFXN3 (ENSMICG00000000018)	PDZD7 (ENSMICG00000000017)
Bushbaby	MODERN SPECIES	136	ARL3 (ENSOGAG00000003631) #7	TRIM8 (ENSOGAG00000003628) #8	SUFU (ENSOGAG00000004840) #9	ENSOGAG00000002647	ACTR1A (ENSOGAG00000004838) #11	MFSD13A (ENSOGAG00000000319)	CUEDC2 (ENSOGAG00000016405) #13	FBXL15 (ENSOGAG00000016397) #14	PSD (ENSOGAG00000016389) #15	NFKB2 (ENSOGAG00000016379) #16	GBF1 (ENSOGAG00000016366) #17	PITX3 (ENSOGAG00000029285) #18	ELOVL3 (ENSOGAG00000016363) #19	NOLC1 (ENSOGAG00000016359) #20	PPRC1 (ENSOGAG00000016354) #21	LDB1 (ENSOGAG00000016349) #22	HPS6 (ENSOGAG00000033543)	ARMH3 (ENSOGAG00000010009) #24	KCNIP2 (ENSOGAG00000010006) #26	ENSOGAG00000010002 #27	NPM3 (ENSOGAG00000010001) #28	FGF8 (ENSOGAG00000024920) #29	FBXW4 (ENSOGAG00000033125) #30	POLL (ENSOGAG00000012042) #32	BTRC (ENSOGAG00000014623) #33	LBX1 (ENSOGAG00000008679) #35	TLX1 (ENSOGAG00000013614) #37	KAZALD1 (ENSOGAG00000011722)	SFXN3 (ENSOGAG00000012881)	PDZD7 (ENSOGAG00000012875)	LZTS2 (ENSOGAG00000012873)
Euarchontoglires_A	ANCESTRAL SPECIES	15	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT01100000267139	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Tree shrew	MODERN SPECIES	3389														NOLC1 (ENSTBEG00000008884) #20	PPRC1 (ENSTBEG00000008148) #21	LDB1 (ENSTBEG00000006924) #22	HPS6 (ENSTBEG00000006230)	ARMH3 (ENSTBEG00000004022) #24	OGA (ENSTBEG00000003188) #27	POLL (ENSTBEG00000002691) #32	BTRC (ENSTBEG00000001368) #33
Glires	ANCESTRAL SPECIES	16	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT01100000267139	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Rodentia	ANCESTRAL SPECIES	16	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT01100000267139	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00990000203892
Rodentia_B	ANCESTRAL SPECIES	10	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00990000203892
Myomorpha	ANCESTRAL SPECIES	1	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00990000203892
Muroidea	ANCESTRAL SPECIES	1	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00990000203892
Muroidea_A	ANCESTRAL SPECIES		ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00990000203892
Cricetidae	ANCESTRAL SPECIES	1	ENSGT01030000234641.b.a.a	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00990000203892
Cricetinae	ANCESTRAL SPECIES	2	ENSGT01030000234641.b.a.a	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Golden Hamster	MODERN SPECIES	617	Sfxn2 (ENSMAUG00000015554)	ENSMAUG00000014603 #7	Trim8 (ENSMAUG00000015163) #8	Sufu (ENSMAUG00000017018) #9	ENSMAUG00000017290 #11	Mfsd13a (ENSMAUG00000014106)	Cuedc2 (ENSMAUG00000015254) #13	Fbxl15 (ENSMAUG00000015625) #14	Psd (ENSMAUG00000017086) #15	Nfkb2 (ENSMAUG00000016292) #16	ENSMAUG00000017130 #17	ENSMAUG00000017791 #17	Pitx3 (ENSMAUG00000015434) #18	Elovl3 (ENSMAUG00000013792) #19	Pprc1 (ENSMAUG00000016674) #21	Ldb1 (ENSMAUG00000018515) #22	Hps6 (ENSMAUG00000002039)	Armh3 (ENSMAUG00000019449) #24	Kcnip2 (ENSMAUG00000019652) #26	Oga (ENSMAUG00000015052) #27	Npm3 (ENSMAUG00000015218) #28	Fgf8 (ENSMAUG00000016383) #29	ENSMAUG00000015569	ENSMAUG00000015787 #30	Dpcd (ENSMAUG00000017884) #31	Poll (ENSMAUG00000014674) #32	Btrc (ENSMAUG00000016001) #33	Lbx1 (ENSMAUG00000015198) #35	Tlx1 (ENSMAUG00000015538) #37	Kazald1 (ENSMAUG00000017475)	Sfxn3 (ENSMAUG00000017975)
Chinese hamster chok1gshd	MODERN SPECIES	215	Sfxn2 (ENSCGRG00001018053)	Arl3 (ENSCGRG00001020323) #7	Trim8 (ENSCGRG00001024342) #8	Sufu (ENSCGRG00001006263) #9	Actr1a (ENSCGRG00001013578) #11	Mfsd13a (ENSCGRG00001017917)	Fbxl15 (ENSCGRG00001022005) #14	Cuedc2 (ENSCGRG00001022970) #13	Psd (ENSCGRG00001000373) #15	Nfkb2 (ENSCGRG00001009030) #16	Gbf1 (ENSCGRG00001022494) #17	Pitx3 (ENSCGRG00001024147) #18	ELOVL3 (ENSCGRG00001005008) #19	Nolc1 (ENSCGRG00001009806) #20	Pprc1 (ENSCGRG00001011726) #21	Ldb1 (ENSCGRG00001020743) #22	Hps6 (ENSCGRG00001010957)	Armh3 (ENSCGRG00001015570) #24	Kcnip2 (ENSCGRG00001019478) #26	Oga (ENSCGRG00001020553) #27	Npm3 (ENSCGRG00001013345) #28	Fgf8 (ENSCGRG00001015246) #29	Fbxw4 (ENSCGRG00001003996) #30	Dpcd (ENSCGRG00001005917) #31	Poll (ENSCGRG00001010513) #32	Btrc (ENSCGRG00001015459) #33	Lbx1 (ENSCGRG00001017540) #35	Tlx1 (ENSCGRG00001021053) #37	Kazald1 (ENSCGRG00001000227)	Sfxn3 (ENSCGRG00001015591)	Pdzd7 (ENSCGRG00001017672)
Cricetidae_B	ANCESTRAL SPECIES	1	ENSGT01030000234641.b.a.a	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00990000203892
Northern American deer mouse	MODERN SPECIES		Sfxn2 (ENSPEMG00000012438)	Arl3 (ENSPEMG00000012608) #7	Trim8 (ENSPEMG00000027998) #8	Sufu (ENSPEMG00000009470) #9	Actr1a (ENSPEMG00000006737) #11	Mfsd13a (ENSPEMG00000016696)	Cuedc2 (ENSPEMG00000012762) #13	Fbxl15 (ENSPEMG00000012550) #14	Psd (ENSPEMG00000010757) #15	Nfkb2 (ENSPEMG00000014947) #16	Gbf1 (ENSPEMG00000018772) #17	Pitx3 (ENSPEMG00000026373) #18	Elovl3 (ENSPEMG00000000778) #19	ENSPEMG00000026626	Pprc1 (ENSPEMG00000016590) #21	Ldb1 (ENSPEMG00000011489) #22	Hps6 (ENSPEMG00000003992)	Armh3 (ENSPEMG00000014466) #24	Kcnip2 (ENSPEMG00000015045) #26	Oga (ENSPEMG00000008883) #27	Npm3 (ENSPEMG00000007731) #28	Fgf8 (ENSPEMG00000012905) #29	Fbxw4 (ENSPEMG00000024901) #30	Dpcd (ENSPEMG00000014479) #31	Poll (ENSPEMG00000006876) #32	Btrc (ENSPEMG00000014260) #33	Lbx1 (ENSPEMG00000026119) #35	Tlx1 (ENSPEMG00000016966) #37	Kazald1 (ENSPEMG00000018686)	Sfxn3 (ENSPEMG00000012869)	ENSPEMG00000030678
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	16	Arl3 (ENSMOCG00000015961) #7	Trim8 (ENSMOCG00000013735) #8	Sufu (ENSMOCG00000016812) #9	Actr1a (ENSMOCG00000020878) #11	Mfsd13a (ENSMOCG00000018673)	Cuedc2 (ENSMOCG00000001067) #13	Fbxl15 (ENSMOCG00000022420) #14	Psd (ENSMOCG00000014904) #15	Nfkb2 (ENSMOCG00000011590) #16	Gbf1 (ENSMOCG00000022834) #17	Pitx3 (ENSMOCG00000012980) #18	Elovl3 (ENSMOCG00000022790) #19	Nolc1 (ENSMOCG00000015232) #20	ENSMOCG00000018283 #21	ENSMOCG00000014044 #21	ENSMOCG00000004202 #22	Hps6 (ENSMOCG00000001347)	Armh3 (ENSMOCG00000011932) #24	Kcnip2 (ENSMOCG00000022254) #26	Oga (ENSMOCG00000014392) #27	Npm3 (ENSMOCG00000013601) #28	Fgf8 (ENSMOCG00000021407) #29	Fbxw4 (ENSMOCG00000013178) #30	Dpcd (ENSMOCG00000013756) #31	Poll (ENSMOCG00000006566) #32	Btrc (ENSMOCG00000002451) #33	Lbx1 (ENSMOCG00000018337) #35	Tlx1 (ENSMOCG00000017096) #37	Kazald1 (ENSMOCG00000015994)	Sfxn3 (ENSMOCG00000022608)	ENSMOCG00000019069
Prairie vole	MODERN SPECIES	119														ENSMOCG00000000055	ENSMOCG00000005716	ENSMOCG00000004107 #22	Il1rapl1 (ENSMOCG00000003030)
Murinae	ANCESTRAL SPECIES		ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801.d #18	ENSGT01050000244965.a #19	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Mus	ANCESTRAL SPECIES		ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801.d #18	ENSGT01050000244965.a #19	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Mus_A	ANCESTRAL SPECIES	16	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801.d #18	ENSGT01050000244965.a #19	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a.p	ENSGT00950000183002.C
Mus_B	ANCESTRAL SPECIES	16	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801.d #18	ENSGT01050000244965.a #19	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a.p	ENSGT00950000183002.C
Mus_C	ANCESTRAL SPECIES	24	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801.d #18	ENSGT01050000244965.a #19	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a.p	ENSGT00950000183002.C
spretus	MODERN SPECIES	10	Sfxn2 (MGP_SPRETEiJ_G0023961)	Arl3 (MGP_SPRETEiJ_G0023960) #7	Trim8 (MGP_SPRETEiJ_G0023959) #8	Sufu (MGP_SPRETEiJ_G0023958) #9	Actr1a (MGP_SPRETEiJ_G0023957) #11	Mfsd13a (MGP_SPRETEiJ_G0023956)	Cuedc2 (MGP_SPRETEiJ_G0023955) #13	Fbxl15 (MGP_SPRETEiJ_G0023954) #14	Psd (MGP_SPRETEiJ_G0023953) #15	Nfkb2 (MGP_SPRETEiJ_G0023952) #16	Gbf1 (MGP_SPRETEiJ_G0023951) #17	Pitx3 (MGP_SPRETEiJ_G0023950) #18	Elovl3 (MGP_SPRETEiJ_G0023949) #19	Nolc1 (MGP_SPRETEiJ_G0023948) #20	Pprc1 (MGP_SPRETEiJ_G0023947) #21	Ldb1 (MGP_SPRETEiJ_G0023946) #22	Hps6 (MGP_SPRETEiJ_G0023945)	Armh3 (MGP_SPRETEiJ_G0023944) #24	Kcnip2 (MGP_SPRETEiJ_G0023943) #26	Oga (MGP_SPRETEiJ_G0023942) #27	Npm3 (MGP_SPRETEiJ_G0023941) #28	Fgf8 (MGP_SPRETEiJ_G0023940) #29	MGP_SPRETEiJ_G0023939 #30	Dpcd (MGP_SPRETEiJ_G0023938) #31	Poll (MGP_SPRETEiJ_G0023937) #32	Btrc (MGP_SPRETEiJ_G0023936) #33	Lbx1 (MGP_SPRETEiJ_G0023935) #35	Tlx1 (MGP_SPRETEiJ_G0023934) #37	Kazald1 (MGP_SPRETEiJ_G0023933)	Sfxn3 (MGP_SPRETEiJ_G0023932)	Pdzd7 (MGP_SPRETEiJ_G0023931)
Steppe mouse	MODERN SPECIES	3317	Arl3 (ENSMSIG00000011164) #7	Trim8 (ENSMSIG00000011181) #8	Sufu (ENSMSIG00000011215) #9	Actr1a (ENSMSIG00000011269) #11	Mfsd13a (ENSMSIG00000011296)	2310034G01Rik (ENSMSIG00000011343)	Cuedc2 (ENSMSIG00000011362) #13	Fbxl15 (ENSMSIG00000011465) #14	Psd (ENSMSIG00000011495) #15	Nfkb2 (ENSMSIG00000011557) #16	Gbf1 (ENSMSIG00000011585) #17	Pitx3 (ENSMSIG00000011679) #18	Elovl3 (ENSMSIG00000011691) #19	Nolc1 (ENSMSIG00000011702) #20	Pprc1 (ENSMSIG00000011750) #21	Ldb1 (ENSMSIG00000011766) #22	Hps6 (ENSMSIG00000011802)	Armh3 (ENSMSIG00000011813) #24	ENSMSIG00000011884 #26	Oga (ENSMSIG00000012429) #27	Npm3 (ENSMSIG00000012497) #28	Fgf8 (ENSMSIG00000012521) #29	ENSMSIG00000012591 #30	ENSMSIG00000012629 #31	Poll (ENSMSIG00000012645) #32	Btrc (ENSMSIG00000012680) #33	Lbx1 (ENSMSIG00000012769) #35	Tlx1 (ENSMSIG00000012781) #37	Kazald1 (ENSMSIG00000012802)	Sfxn3 (ENSMSIG00000012828)	Pdzd7 (ENSMSIG00000012912)
Mouse	MODERN SPECIES	10	Arl3 (ENSMUSG00000025035) #7	Trim8 (ENSMUSG00000025034) #8	Sufu (ENSMUSG00000025231) #9	Actr1a (ENSMUSG00000025228) #11	2310034G01Rik (ENSMUSG00000099655)	Mfsd13a (ENSMUSG00000025227)	Cuedc2 (ENSMUSG00000036748) #13	Fbxl15 (ENSMUSG00000025226) #14	Psd (ENSMUSG00000037126) #15	Nfkb2 (ENSMUSG00000025225) #16	Gbf1 (ENSMUSG00000025224) #17	Pitx3 (ENSMUSG00000025229) #18	Elovl3 (ENSMUSG00000038754) #19	Nolc1 (ENSMUSG00000015176) #20	Pprc1 (ENSMUSG00000055491) #21	Ldb1 (ENSMUSG00000025223) #22	Hps6 (ENSMUSG00000074811)	Armh3 (ENSMUSG00000039901) #24	Kcnip2 (ENSMUSG00000025221) #26	Oga (ENSMUSG00000025220) #27	Npm3 (ENSMUSG00000056209) #28	Fgf8 (ENSMUSG00000025219) #29	Fbxw4 (ENSMUSG00000040913) #30	Dpcd (ENSMUSG00000041035) #31	Poll (ENSMUSG00000025218) #32	Btrc (ENSMUSG00000025217) #33	Lbx1 (ENSMUSG00000025216) #35	Tlx1 (ENSMUSG00000025215) #37	Kazald1 (ENSMUSG00000025213)	Sfxn3 (ENSMUSG00000025212)	Pdzd7 (ENSMUSG00000074818)
Ryukyu mouse	MODERN SPECIES	10	Sfxn2 (MGP_CAROLIEiJ_G0023040)	Arl3 (MGP_CAROLIEiJ_G0023039) #7	Trim8 (MGP_CAROLIEiJ_G0023038) #8	Sufu (MGP_CAROLIEiJ_G0023037) #9	Actr1a (MGP_CAROLIEiJ_G0023036) #11	Mfsd13a (MGP_CAROLIEiJ_G0023035)	Cuedc2 (MGP_CAROLIEiJ_G0023034) #13	Fbxl15 (MGP_CAROLIEiJ_G0023033) #14	Psd (MGP_CAROLIEiJ_G0023032) #15	Nfkb2 (MGP_CAROLIEiJ_G0023031) #16	Gbf1 (MGP_CAROLIEiJ_G0023030) #17	Pitx3 (MGP_CAROLIEiJ_G0023029) #18	Elovl3 (MGP_CAROLIEiJ_G0023028) #19	Nolc1 (MGP_CAROLIEiJ_G0023027) #20	Pprc1 (MGP_CAROLIEiJ_G0023026) #21	Ldb1 (MGP_CAROLIEiJ_G0023025) #22	Hps6 (MGP_CAROLIEiJ_G0023024)	Armh3 (MGP_CAROLIEiJ_G0023023) #24	Kcnip2 (MGP_CAROLIEiJ_G0023022) #26	Oga (MGP_CAROLIEiJ_G0023021) #27	Npm3 (MGP_CAROLIEiJ_G0023020) #28	Fgf8 (MGP_CAROLIEiJ_G0023019) #29	Fbxw4 (MGP_CAROLIEiJ_G0023018) #30	Dpcd (MGP_CAROLIEiJ_G0023017) #31	Poll (MGP_CAROLIEiJ_G0023016) #32	Btrc (MGP_CAROLIEiJ_G0023015) #33	Lbx1 (MGP_CAROLIEiJ_G0023014) #35	Tlx1 (MGP_CAROLIEiJ_G0023013) #37	Kazald1 (MGP_CAROLIEiJ_G0023012)	Sfxn3 (MGP_CAROLIEiJ_G0023011)	Pdzd7 (MGP_CAROLIEiJ_G0023010)
Shrew mouse	MODERN SPECIES		Sfxn2 (MGP_PahariEiJ_G0014530)	Arl3 (MGP_PahariEiJ_G0014529) #7	Trim8 (MGP_PahariEiJ_G0014528) #8	Sufu (MGP_PahariEiJ_G0014527) #9	Actr1a (MGP_PahariEiJ_G0014526) #11	Mfsd13a (MGP_PahariEiJ_G0014525)	Cuedc2 (MGP_PahariEiJ_G0014524) #13	Fbxl15 (MGP_PahariEiJ_G0014523) #14	Psd (MGP_PahariEiJ_G0014522) #15	Nfkb2 (MGP_PahariEiJ_G0014521) #16	Gbf1 (MGP_PahariEiJ_G0014520) #17	Pitx3 (MGP_PahariEiJ_G0014519) #18	Elovl3 (MGP_PahariEiJ_G0014518) #19	Nolc1 (MGP_PahariEiJ_G0014517) #20	Pprc1 (MGP_PahariEiJ_G0014516) #21	Ldb1 (MGP_PahariEiJ_G0014515) #22	Hps6 (MGP_PahariEiJ_G0014514)	Armh3 (MGP_PahariEiJ_G0014513) #24	Kcnip2 (MGP_PahariEiJ_G0014512) #26	Oga (MGP_PahariEiJ_G0014511) #27	Npm3 (MGP_PahariEiJ_G0014510) #28	Fgf8 (MGP_PahariEiJ_G0014509) #29	MGP_PahariEiJ_G0014508 #30	Dpcd (MGP_PahariEiJ_G0014507) #31	Poll (MGP_PahariEiJ_G0014506) #32	Btrc (MGP_PahariEiJ_G0014505) #33	Lbx1 (MGP_PahariEiJ_G0014504) #35	Tlx1 (MGP_PahariEiJ_G0014503) #37	Kazald1 (MGP_PahariEiJ_G0014502)	Sfxn3 (MGP_PahariEiJ_G0014501)	Pdzd7 (MGP_PahariEiJ_G0014500)
Rat	MODERN SPECIES		Arl3 (ENSRNOG00000019973) #7	Trim8 (ENSRNOG00000019968) #8	Sufu (ENSRNOG00000019807) #9	Actr1a (ENSRNOG00000019725) #11	Mfsd13a (ENSRNOG00000019674)	C1H10orf95 (ENSRNOG00000066499)	Cuedc2 (ENSRNOG00000019574) #13	Fbxl15 (ENSRNOG00000019509) #14	Psd (ENSRNOG00000019435) #15	Nfkb2 (ENSRNOG00000019311) #16	Gbf1 (ENSRNOG00000026048) #17	Pitx3 (ENSRNOG00000019194) #18	Elovl3 (ENSRNOG00000019124) #19	Nolc1 (ENSRNOG00000018704) #20	Pprc1 (ENSRNOG00000018561) #21	Ldb1 (ENSRNOG00000018468) #22	Hps6 (ENSRNOG00000018433)	Armh3 (ENSRNOG00000025523) #24	Kcnip2 (ENSRNOG00000018018) #26	Oga (ENSRNOG00000017822) #27	Npm3 (ENSRNOG00000017622) #28	Fgf8 (ENSRNOG00000017524) #29	Fbxw4 (ENSRNOG00000046211) #30	Dpcd (ENSRNOG00000017241) #31	Poll (ENSRNOG00000016748) #32	Btrc (ENSRNOG00000016280) #33	Lbx1 (ENSRNOG00000025520) #35	Tlx1 (ENSRNOG00000016120) #37	Kazald1 (ENSRNOG00000016058)	Sfxn3 (ENSRNOG00000015442)	Pdzd7 (ENSRNOG00000032946)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1300	Sfxn2 (ENSNGAG00000013387)	Arl3 (ENSNGAG00000024014) #7	Trim8 (ENSNGAG00000023166) #8	Sufu (ENSNGAG00000022855) #9	Actr1a (ENSNGAG00000012852) #11	Mfsd13a (ENSNGAG00000010719)	Cuedc2 (ENSNGAG00000021332) #13	Fbxl15 (ENSNGAG00000011400) #14	Psd (ENSNGAG00000011541) #15	Nfkb2 (ENSNGAG00000022988) #16	Gbf1 (ENSNGAG00000006095) #17	Pitx3 (ENSNGAG00000021500) #18	Elovl3 (ENSNGAG00000013825) #19	Nolc1 (ENSNGAG00000024139) #20	Pprc1 (ENSNGAG00000016516) #21	Ldb1 (ENSNGAG00000024157) #22	ENSNGAG00000021169	Hps6 (ENSNGAG00000012214)	Armh3 (ENSNGAG00000023147) #24	Kcnip2 (ENSNGAG00000024132) #26	Oga (ENSNGAG00000011804) #27	ENSNGAG00000022833 #28	Fgf8 (ENSNGAG00000018999) #29	Fbxw4 (ENSNGAG00000022749) #30	Dpcd (ENSNGAG00000015959) #31	Poll (ENSNGAG00000021402) #32	Btrc (ENSNGAG00000001803) #33	ENSNGAG00000023625	Lbx1 (ENSNGAG00000023979) #35	Tlx1 (ENSNGAG00000024255) #37	Kazald1 (ENSNGAG00000011414)
Lesser Egyptian jerboa	MODERN SPECIES	70	Sufu (ENSJJAG00000004811) #9	Actr1a (ENSJJAG00000012214) #11	Mfsd13a (ENSJJAG00000019354)	Cuedc2 (ENSJJAG00000019898) #13	Fbxl15 (ENSJJAG00000018833) #14	Psd (ENSJJAG00000020932) #15	Nfkb2 (ENSJJAG00000011519) #16	ENSJJAG00000018772	ENSJJAG00000010788 #17	ENSJJAG00000023637 #17	Pitx3 (ENSJJAG00000020721) #18	Elovl3 (ENSJJAG00000020437) #19	Nolc1 (ENSJJAG00000021131) #20	ENSJJAG00000005177 #21	ENSJJAG00000024088 #21	Ldb1 (ENSJJAG00000012307) #22	Hps6 (ENSJJAG00000011662)	Armh3 (ENSJJAG00000018861) #24	Kcnip2 (ENSJJAG00000019358) #26	Oga (ENSJJAG00000020565) #27	Npm3 (ENSJJAG00000018907) #28	Fgf8 (ENSJJAG00000014440) #29	ENSJJAG00000016263 #30	Dpcd (ENSJJAG00000010119) #31	Poll (ENSJJAG00000024104) #32	Btrc (ENSJJAG00000011813) #33	Lbx1 (ENSJJAG00000021756) #35	ENSJJAG00000006430 #37	Kazald1 (ENSJJAG00000021687)	Sfxn3 (ENSJJAG00000016145)	ENSJJAG00000014285
Kangaroo rat	MODERN SPECIES	355	Arl3 (ENSDORG00000012086) #7	Trim8 (ENSDORG00000027571) #8	Sufu (ENSDORG00000003105) #9	Actr1a (ENSDORG00000027112) #11	Mfsd13a (ENSDORG00000013635)	Cuedc2 (ENSDORG00000013412) #13	Fbxl15 (ENSDORG00000013411) #14	Psd (ENSDORG00000013410) #15	Nfkb2 (ENSDORG00000013409) #16	ENSDORG00000013406 #17	ENSDORG00000024842 #17	Pitx3 (ENSDORG00000023993) #18	Elovl3 (ENSDORG00000027255) #19	Nolc1 (ENSDORG00000001056) #20	Pprc1 (ENSDORG00000001046) #21	Ldb1 (ENSDORG00000003498) #22	Hps6 (ENSDORG00000028123)	ENSDORG00000023337	Armh3 (ENSDORG00000003496) #24	Kcnip2 (ENSDORG00000003495) #26	Oga (ENSDORG00000003493) #27	Npm3 (ENSDORG00000003491) #28	Fgf8 (ENSDORG00000029227) #29	Fbxw4 (ENSDORG00000014212) #30	Dpcd (ENSDORG00000014209) #31	Poll (ENSDORG00000024173) #32	Btrc (ENSDORG00000014204) #33	Lbx1 (ENSDORG00000029567) #35	ENSDORG00000025952 #37	Kazald1 (ENSDORG00000016417)	Sfxn3 (ENSDORG00000016415)
Rodentia_A	ANCESTRAL SPECIES	15	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT01100000267139	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00990000203892
Sciuridae	ANCESTRAL SPECIES	21	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT01100000267139	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00990000203892
Marmotini	ANCESTRAL SPECIES	16	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT01100000267139	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00990000203892
Marmotini_b	ANCESTRAL SPECIES	76	ENSGT01030000234641.b.a.a	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Arctic ground squirrel	DUPLICATION
Arctic ground squirrel	DUPLICATION
Arctic ground squirrel	MODERN SPECIES	11	ENSUPAG00010006434	MYD88 (ENSUPAG00010006426)	OXSR1 (ENSUPAG00010006413)	SLC22A13 (ENSUPAG00010006404)	SLC22A14 (ENSUPAG00010006376)	ENSUPAG00010006366	DLEC1 (ENSUPAG00010006279)	PLCD1 (ENSUPAG00010006225)	VILL (ENSUPAG00010006192)	CTDSPL (ENSUPAG00010006173)	ITGA9 (ENSUPAG00010006117)	GOLGA4 (ENSUPAG00010005954)	LRRFIP2 (ENSUPAG00010005307)	MLH1 (ENSUPAG00010005272)	EPM2AIP1 (ENSUPAG00010005264)	ENSUPAG00010005263 #22	ENSUPAG00010005258	TRANK1 (ENSUPAG00010005066)	DCLK3 (ENSUPAG00010005058)	STAC (ENSUPAG00010005051)	ARPP21 (ENSUPAG00010004968)	ENSUPAG00010004908	CLASP2 (ENSUPAG00010002896)	UBP1 (ENSUPAG00010002830)	FBXL2 (ENSUPAG00010002805)	SUSD5 (ENSUPAG00010002801)	CRTAP (ENSUPAG00010002794)	GLB1 (ENSUPAG00010002756)	CCR4 (ENSUPAG00010002745)	TRIM71 (ENSUPAG00010002736)	CNOT10 (ENSUPAG00010002658)
Arctic ground squirrel	MODERN SPECIES	70	CEP57L1 (ENSUPAG00010011576)	ENSUPAG00010011362	ENSUPAG00010011356	PPIL6 (ENSUPAG00010011347)	SMPD2 (ENSUPAG00010011331)	MICAL1 (ENSUPAG00010011267)	ZBTB24 (ENSUPAG00010011264)	ENSUPAG00010011248	ENSUPAG00010011244	FIG4 (ENSUPAG00010011226)	GPR6 (ENSUPAG00010011220)	WASF1 (ENSUPAG00010011212)	CDC40 (ENSUPAG00010011201)	METTL24 (ENSUPAG00010011195)	DDO (ENSUPAG00010011172)	ENSUPAG00010011165 #22	SLC22A16 (ENSUPAG00010011158)	CDK19 (ENSUPAG00010011128)	ENSUPAG00010011077	GTF3C6 (ENSUPAG00010011073)	RPF2 (ENSUPAG00010011068)
Arctic ground squirrel	MODERN SPECIES	373														NOLC1 (ENSUPAG00010009783) #20	PPRC1 (ENSUPAG00010009814) #21	ENSUPAG00010009826 #22	HPS6 (ENSUPAG00010009845)	ARMH3 (ENSUPAG00010009848) #24	KCNIP2 (ENSUPAG00010009866) #26	OGA (ENSUPAG00010010052) #27	NPM3 (ENSUPAG00010010073) #28	FGF8 (ENSUPAG00010010083) #29	FBXW4 (ENSUPAG00010010202) #30	DPCD (ENSUPAG00010010220) #31	POLL (ENSUPAG00010010241) #32	BTRC (ENSUPAG00010010245) #33	ENSUPAG00010010321	LBX1 (ENSUPAG00010010328) #35	TLX1 (ENSUPAG00010010336) #37	KAZALD1 (ENSUPAG00010010340)	SFXN3 (ENSUPAG00010010359)
Squirrel	MODERN SPECIES	200	ARL3 (ENSSTOG00000014453) #7	TRIM8 (ENSSTOG00000008270) #8	SUFU (ENSSTOG00000026796) #9	ACTR1A (ENSSTOG00000014434) #11	MFSD13A (ENSSTOG00000014428)	CUEDC2 (ENSSTOG00000022008) #13	FBXL15 (ENSSTOG00000022528) #14	PSD (ENSSTOG00000021577) #15	NFKB2 (ENSSTOG00000002191) #16	GBF1 (ENSSTOG00000002171) #17	PITX3 (ENSSTOG00000015025) #18	ELOVL3 (ENSSTOG00000015013) #19	NOLC1 (ENSSTOG00000002168) #20	ENSSTOG00000002156 #21	ENSSTOG00000034359 #21	LDB1 (ENSSTOG00000002139) #22	HPS6 (ENSSTOG00000024918)	ARMH3 (ENSSTOG00000015633) #24	KCNIP2 (ENSSTOG00000021030) #26	ENSSTOG00000032901 #27	NPM3 (ENSSTOG00000022621) #28	FGF8 (ENSSTOG00000023351) #29	FBXW4 (ENSSTOG00000011495) #30	DPCD (ENSSTOG00000011490) #31	POLL (ENSSTOG00000011485) #32	BTRC (ENSSTOG00000022481) #33	LBX1 (ENSSTOG00000006491) #35	ENSSTOG00000023842 #37	KAZALD1 (ENSSTOG00000015240)	SFXN3 (ENSSTOG00000026614)	PDZD7 (ENSSTOG00000009046)
Alpin marmot	MODERN SPECIES	39	TRIM8 (ENSMMMG00000023360) #8	SUFU (ENSMMMG00000023355) #9	ACTR1A (ENSMMMG00000023344) #11	MFSD13A (ENSMMMG00000023338)	CUEDC2 (ENSMMMG00000023329) #13	FBXL15 (ENSMMMG00000023324) #14	ENSMMMG00000023323	ENSMMMG00000023315 #15	ENSMMMG00000023312 #15	NFKB2 (ENSMMMG00000023297) #16	GBF1 (ENSMMMG00000023283) #17	PITX3 (ENSMMMG00000023281) #18	ELOVL3 (ENSMMMG00000023279) #19	NOLC1 (ENSMMMG00000023274) #20	PPRC1 (ENSMMMG00000023259) #21	LDB1 (ENSMMMG00000023248) #22	HPS6 (ENSMMMG00000023243)	ARMH3 (ENSMMMG00000023233) #24	KCNIP2 (ENSMMMG00000023225) #26	OGA (ENSMMMG00000023220) #27	NPM3 (ENSMMMG00000023217) #28	FGF8 (ENSMMMG00000023215) #29	FBXW4 (ENSMMMG00000023212) #30	DPCD (ENSMMMG00000023210) #31	POLL (ENSMMMG00000023200) #32	BTRC (ENSMMMG00000023182) #33	LBX1 (ENSMMMG00000023177) #35	ENSMMMG00000023172 #37	KAZALD1 (ENSMMMG00000023167)	SFXN3 (ENSMMMG00000023149)	ENSMMMG00000023146
Eurasian red squirrel	MODERN SPECIES	13	SFXN2 (ENSSVLG00005003816)	ARL3 (ENSSVLG00005003847) #7	TRIM8 (ENSSVLG00005003874) #8	ENSSVLG00005003897 #9	ACTR1A (ENSSVLG00005003935) #11	MFSD13A (ENSSVLG00005003972)	CUEDC2 (ENSSVLG00005004017) #13	FBXL15 (ENSSVLG00005004039) #14	PSD (ENSSVLG00005004064) #15	NFKB2 (ENSSVLG00005004099) #16	GBF1 (ENSSVLG00005004145) #17	PITX3 (ENSSVLG00005004181) #18	ELOVL3 (ENSSVLG00005004199) #19	NOLC1 (ENSSVLG00005004225) #20	PPRC1 (ENSSVLG00005004252) #21	LDB1 (ENSSVLG00005004323) #22	HPS6 (ENSSVLG00005004366)	ARMH3 (ENSSVLG00005004399) #24	KCNIP2 (ENSSVLG00005004570) #26	OGA (ENSSVLG00005004824) #27	FGF8 (ENSSVLG00005005038) #29	FBXW4 (ENSSVLG00005005056) #30	DPCD (ENSSVLG00005005104) #31	POLL (ENSSVLG00005005135) #32	BTRC (ENSSVLG00005005205) #33	LBX1 (ENSSVLG00005005245) #35	TLX1 (ENSSVLG00005005266) #37	KAZALD1 (ENSSVLG00005005289)	SFXN3 (ENSSVLG00005005315)	PDZD7 (ENSSVLG00005005347)	LZTS2 (ENSSVLG00005005380)
Hystricomorpha	ANCESTRAL SPECIES	1	ENSGT01030000234641.b.a.a	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Hystricomorpha_a	ANCESTRAL SPECIES	3	ENSGT01030000234641.b.a.a	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Hystricomorpha_b	ANCESTRAL SPECIES	14	ENSGT01030000234641.b.a.a	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092.b #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Long-tailed chinchilla	MODERN SPECIES	192	SFXN2 (ENSCLAG00000001037)	ARL3 (ENSCLAG00000001055) #7	TRIM8 (ENSCLAG00000001092) #8	SUFU (ENSCLAG00000001257) #9	ACTR1A (ENSCLAG00000001321) #11	MFSD13A (ENSCLAG00000001530)	CUEDC2 (ENSCLAG00000001551) #13	FBXL15 (ENSCLAG00000001578) #14	PSD (ENSCLAG00000003741) #15	NFKB2 (ENSCLAG00000004104) #16	GBF1 (ENSCLAG00000004338) #17	PITX3 (ENSCLAG00000005073) #18	ELOVL3 (ENSCLAG00000005342) #19	NOLC1 (ENSCLAG00000001046) #20	PPRC1 (ENSCLAG00000001364) #21	LDB1 (ENSCLAG00000001555) #22	HPS6 (ENSCLAG00000001624)	ARMH3 (ENSCLAG00000001673) #24	KCNIP2 (ENSCLAG00000000954) #26	OGA (ENSCLAG00000001003) #27	FGF8 (ENSCLAG00000001075) #29	FBXW4 (ENSCLAG00000001132) #30	DPCD (ENSCLAG00000001147) #31	POLL (ENSCLAG00000001165) #32	BTRC (ENSCLAG00000001243) #33	LBX1 (ENSCLAG00000001298) #35	ENSCLAG00000001309 #37	ENSCLAG00000001318	SFXN3 (ENSCLAG00000001996)	PDZD7 (ENSCLAG00000003178)	LZTS2 (ENSCLAG00000003292)
Degu	MODERN SPECIES	83	ENSODEG00000006734	SUFU (ENSODEG00000007735) #9	ACTR1A (ENSODEG00000008379) #11	MFSD13A (ENSODEG00000008625)	CUEDC2 (ENSODEG00000007262) #13	FBXL15 (ENSODEG00000007513) #14	PSD (ENSODEG00000006424) #15	NFKB2 (ENSODEG00000007396) #16	ENSODEG00000006690	GBF1 (ENSODEG00000007076) #17	PITX3 (ENSODEG00000007162) #18	ELOVL3 (ENSODEG00000006606) #19	NOLC1 (ENSODEG00000006304) #20	ENSODEG00000006985 #21	ENSODEG00000009568 #21	LDB1 (ENSODEG00000009090) #22	HPS6 (ENSODEG00000007638)	ENSODEG00000019424	ARMH3 (ENSODEG00000007299) #24	ENSODEG00000010569	KCNIP2 (ENSODEG00000007199) #26	ENSODEG00000019634	OGA (ENSODEG00000008001) #27	NPM3 (ENSODEG00000006704) #28	FGF8 (ENSODEG00000006423) #29	FBXW4 (ENSODEG00000007897) #30	DPCD (ENSODEG00000005983) #31	POLL (ENSODEG00000007469) #32	BTRC (ENSODEG00000008464) #33	LBX1 (ENSODEG00000006684) #35	ENSODEG00000006094 #37
Guinea pig	MODERN SPECIES	11	SFXN2 (ENSCPOG00000014474)	ARL3 (ENSCPOG00000014473) #7	TRIM8 (ENSCPOG00000012305) #8	SUFU (ENSCPOG00000011097) #9	ACTR1A (ENSCPOG00000011090) #11	MFSD13A (ENSCPOG00000011087)	CUEDC2 (ENSCPOG00000032492) #13	FBXL15 (ENSCPOG00000021451) #14	PSD (ENSCPOG00000000156) #15	NFKB2 (ENSCPOG00000004847) #16	GBF1 (ENSCPOG00000004514) #17	PITX3 (ENSCPOG00000036365) #18	ELOVL3 (ENSCPOG00000014884) #19	NOLC1 (ENSCPOG00000004504) #20	PPRC1 (ENSCPOG00000032149) #21	LDB1 (ENSCPOG00000010311) #22	HPS6 (ENSCPOG00000006084)	ARMH3 (ENSCPOG00000031847) #24	KCNIP2 (ENSCPOG00000011918) #26	OGA (ENSCPOG00000000219) #27	NPM3 (ENSCPOG00000006301) #28	FGF8 (ENSCPOG00000021533) #29	ENSCPOG00000032448 #30	DPCD (ENSCPOG00000005499) #31	POLL (ENSCPOG00000005493) #32	BTRC (ENSCPOG00000005488) #33	LBX1 (ENSCPOG00000025830) #35	TLX1 (ENSCPOG00000003194) #37	KAZALD1 (ENSCPOG00000015270)	SFXN3 (ENSCPOG00000000955)	ENSCPOG00000000952
Naked mole-rat female	MODERN SPECIES	4	SUFU (ENSHGLG00000002357) #9	ENSHGLG00000002713	ACTR1A (ENSHGLG00000044976) #11	MFSD13A (ENSHGLG00000003127)	ENSHGLG00000041712	CUEDC2 (ENSHGLG00000002956) #13	FBXL15 (ENSHGLG00000002839) #14	PSD (ENSHGLG00000002612) #15	GBF1 (ENSHGLG00000002115) #17	ENSHGLG00000042455 #17	PITX3 (ENSHGLG00000001851) #18	ELOVL3 (ENSHGLG00000003511) #19	ENSHGLG00000049553	NOLC1 (ENSHGLG00000003156) #20	PPRC1 (ENSHGLG00000002783) #21	LDB1 (ENSHGLG00000002254) #22	HPS6 (ENSHGLG00000020621)	ARMH3 (ENSHGLG00000002014) #24	ENSHGLG00000043110 #24	KCNIP2 (ENSHGLG00000019185) #26	OGA (ENSHGLG00000019033) #27	NPM3 (ENSHGLG00000049984) #28	FGF8 (ENSHGLG00000013482) #29	FBXW4 (ENSHGLG00000018911) #30	DPCD (ENSHGLG00000019507) #31	POLL (ENSHGLG00000019504) #32	ENSHGLG00000002588 #33	ENSHGLG00000019498	LBX1 (ENSHGLG00000047414) #35	TLX1 (ENSHGLG00000001823) #37	KAZALD1 (ENSHGLG00000002854)
Lagomorpha	ANCESTRAL SPECIES	17	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00940000166473	ENSGT00500000045093	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092.a.a ##20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C	ENSGT00940000154078.a.a
Rabbit	MODERN SPECIES	9	SFXN2 (ENSOCUG00000025541)	ARL3 (ENSOCUG00000005792) #7	TRIM8 (ENSOCUG00000005786) #8	SUFU (ENSOCUG00000005781) #9	ACTR1A (ENSOCUG00000005779) #11	MFSD13A (ENSOCUG00000005770)	FBXL15 (ENSOCUG00000005764) #14	CUEDC2 (ENSOCUG00000023995) #13	PSD (ENSOCUG00000005751) #15	NFKB2 (ENSOCUG00000005735) #16	GBF1 (ENSOCUG00000005714) #17	PITX3 (ENSOCUG00000016065) #18	ELOVL3 (ENSOCUG00000016071) #19	ENSOCUG00000000516 ##20	PPRC1 (ENSOCUG00000000510) #21	LDB1 (ENSOCUG00000025582) #22	ARMH3 (ENSOCUG00000002776) #24	KCNIP2 (ENSOCUG00000026348) #26	OGA (ENSOCUG00000002768) #27	NPM3 (ENSOCUG00000016819) #28	ENSOCUG00000027864 #29	FBXW4 (ENSOCUG00000015386) #30	DPCD (ENSOCUG00000015373) #31	POLL (ENSOCUG00000015364) #32	BTRC (ENSOCUG00000015353) #33	LBX1 (ENSOCUG00000013145) #35	TLX1 (ENSOCUG00000013136) #37	KAZALD1 (ENSOCUG00000002974)	SFXN3 (ENSOCUG00000002751)	ENSOCUG00000031924	ENSOCUG00000006651
Pika	MODERN SPECIES	102												PITX3 (ENSOPRG00000009418) #18	ELOVL3 (ENSOPRG00000009404) #19	NOLC1 (ENSOPRG00000009381) ##20	PPRC1 (ENSOPRG00000009346) #21	LDB1 (ENSOPRG00000009325) #22	ARMH3 (ENSOPRG00000009274) #24	OGA (ENSOPRG00000009241) #27	NPM3 (ENSOPRG00000009229) #28
Laurasiatheria	ANCESTRAL SPECIES	14	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT01100000267139	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00960000190004	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000005639.a.b #22
Hedgehog	MODERN SPECIES	10487																LDB1 (ENSEEUG00000012653) #22
Common shrew	MODERN SPECIES	6613																ENSSARG00000012555 #22
Laurasiatheria_a	ANCESTRAL SPECIES	15	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT01100000267139	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00960000190004	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00990000203892
Laurasiatheria_b	ANCESTRAL SPECIES	15	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT01100000267139	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Carnivora	ANCESTRAL SPECIES	16	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT01100000267139	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Caniformia	ANCESTRAL SPECIES	13	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT01100000267139	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Caniformia_b	ANCESTRAL SPECIES	10	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT01100000267139	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Ursidae	ANCESTRAL SPECIES	5	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT01100000267139	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Ursus	ANCESTRAL SPECIES	7	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT01100000267139	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C	ENSGT00940000154078.a.a
American black bear	MODERN SPECIES	772											GBF1 (ENSUAMG00000028062) #17	PITX3 (ENSUAMG00000028061) #18	ELOVL3 (ENSUAMG00000028060) #19	NOLC1 (ENSUAMG00000028059) #20	PPRC1 (ENSUAMG00000028058) #21	LDB1 (ENSUAMG00000028057) #22	HPS6 (ENSUAMG00000028056)	ARMH3 (ENSUAMG00000028010) #24
Polar bear	MODERN SPECIES	92	CYP17A1 (ENSUMAG00000023508)	WBP1L (ENSUMAG00000023506)	SFXN2 (ENSUMAG00000023501)	ARL3 (ENSUMAG00000023500) #7	TRIM8 (ENSUMAG00000023499) #8	SUFU (ENSUMAG00000023464) #9	ACTR1A (ENSUMAG00000023448) #11	ENSUMAG00000023438	CUEDC2 (ENSUMAG00000023434) #13	PSD (ENSUMAG00000023417) #15	NFKB2 (ENSUMAG00000023323) #16	GBF1 (ENSUMAG00000023098) #17	ELOVL3 (ENSUMAG00000023071) #19	NOLC1 (ENSUMAG00000023063) #20	PPRC1 (ENSUMAG00000023041) #21	LDB1 (ENSUMAG00000023036) #22	HPS6 (ENSUMAG00000023035)	ENSUMAG00000023033	ARMH3 (ENSUMAG00000023027) #24	KCNIP2 (ENSUMAG00000023021) #26	OGA (ENSUMAG00000023018) #27	NPM3 (ENSUMAG00000023016) #28	FBXW4 (ENSUMAG00000023013) #30	DPCD (ENSUMAG00000023012) #31	POLL (ENSUMAG00000023008) #32	BTRC (ENSUMAG00000023002) #33	SFXN3 (ENSUMAG00000022989)	ENSUMAG00000022970	ENSUMAG00000022963	TWNK (ENSUMAG00000022959)	MRPL43 (ENSUMAG00000022958)
Giant Panda	MODERN SPECIES	16	ENSAMEG00000017816 #7	TRIM8 (ENSAMEG00000017812) #8	SUFU (ENSAMEG00000017809) #9	ACTR1A (ENSAMEG00000017796) #11	ENSAMEG00000017791	CUEDC2 (ENSAMEG00000017783) #13	FBXL15 (ENSAMEG00000017780) #14	PSD (ENSAMEG00000017765) #15	NFKB2 (ENSAMEG00000017735) #16	ENSAMEG00000028274	GBF1 (ENSAMEG00000017700) #17	PITX3 (ENSAMEG00000017698) #18	ELOVL3 (ENSAMEG00000026429) #19	NOLC1 (ENSAMEG00000017687) #20	PPRC1 (ENSAMEG00000017685) #21	LDB1 (ENSAMEG00000017674) #22	HPS6 (ENSAMEG00000020223)	ARMH3 (ENSAMEG00000017666) #24	KCNIP2 (ENSAMEG00000017648) #26	OGA (ENSAMEG00000017642) #27	ENSAMEG00000017639 #28	FGF8 (ENSAMEG00000017635) #29	FBXW4 (ENSAMEG00000017630) #30	DPCD (ENSAMEG00000017626) #31	POLL (ENSAMEG00000017616) #32	BTRC (ENSAMEG00000017610) #33	LBX1 (ENSAMEG00000025161) #35	TLX1 (ENSAMEG00000017604) #37	KAZALD1 (ENSAMEG00000017599)	SFXN3 (ENSAMEG00000017589)	PDZD7 (ENSAMEG00000017588)
Mustelinae	ANCESTRAL SPECIES	29	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513.d #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
American mink	MODERN SPECIES	25	TRIM8 (ENSNVIG00000017306) #8	SUFU (ENSNVIG00000017315) #9	ENSNVIG00000017350	ACTR1A (ENSNVIG00000017357) #11	MFSD13A (ENSNVIG00000017424)	C10orf95 (ENSNVIG00000017436)	CUEDC2 (ENSNVIG00000017446) #13	FBXL15 (ENSNVIG00000017463) #14	PSD (ENSNVIG00000017477) #15	NFKB2 (ENSNVIG00000017504) #16	GBF1 (ENSNVIG00000017606) #17	PITX3 (ENSNVIG00000017782) #18	ELOV3 (ENSNVIG00000017791) #19	NOLC1 (ENSNVIG00000017826) #20	PPRC1 (ENSNVIG00000017896) #21	LDB1 (ENSNVIG00000017913) #22	HPS6 (ENSNVIG00000017937)	CJ076 (ENSNVIG00000017939) #24	ENSNVIG00000018006	KCIP2 (ENSNVIG00000018034) #26	OGA (ENSNVIG00000018264) #27	NPM3 (ENSNVIG00000018364) #28	FGF8 (ENSNVIG00000018394) #29	FBXW4 (ENSNVIG00000018442) #30	DPCD (ENSNVIG00000018457) #31	POLL (ENSNVIG00000018469) #32	ENSNVIG00000018498 #33	LBX1 (ENSNVIG00000018557) #35	ENSNVIG00000018563	TLX1 (ENSNVIG00000018572) #37	KAZALD1 (ENSNVIG00000018579)
Ferret	MODERN SPECIES	187	SFXN2 (ENSMPUG00000016862)	ARL3 (ENSMPUG00000016864) #7	TRIM8 (ENSMPUG00000016866) #8	SUFU (ENSMPUG00000016867) #9	ACTR1A (ENSMPUG00000016868) #11	ENSMPUG00000016870	FBXL15 (ENSMPUG00000016872) #14	ENSMPUG00000016874 #13	PSD (ENSMPUG00000016879) #15	NFKB2 (ENSMPUG00000016882) #16	GBF1 (ENSMPUG00000016883) #17	PITX3 (ENSMPUG00000016885) #18	ELOVL3 (ENSMPUG00000016886) #19	NOLC1 (ENSMPUG00000016887) #20	PPRC1 (ENSMPUG00000016888) #21	LDB1 (ENSMPUG00000016889) #22	HPS6 (ENSMPUG00000020133)	ARMH3 (ENSMPUG00000016890) #24	KCNIP2 (ENSMPUG00000016892) #26	OGA (ENSMPUG00000016893) #27	NPM3 (ENSMPUG00000016894) #28	FGF8 (ENSMPUG00000016897) #29	FBXW4 (ENSMPUG00000016906) #30	DPCD (ENSMPUG00000016919) #31	POLL (ENSMPUG00000016920) #32	BTRC (ENSMPUG00000016923) #33	LBX1 (ENSMPUG00000016926) #35	TLX1 (ENSMPUG00000016927) #37	KAZALD1 (ENSMPUG00000016929)	SFXN3 (ENSMPUG00000016930)	PDZD7 (ENSMPUG00000016931)
Canidae	ANCESTRAL SPECIES	16	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Canis_lupus	ANCESTRAL SPECIES	20	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Dog	MODERN SPECIES	20	ARL3 (ENSCAFG00845025280) #7	TRIM8 (ENSCAFG00845025148) #8	SUFU (ENSCAFG00845025024) #9	ACTR1A (ENSCAFG00845024750) #11	MFSD13A (ENSCAFG00845024507)	C28H10orf95 (ENSCAFG00845024439)	CUEDC2 (ENSCAFG00845024377) #13	FBXL15 (ENSCAFG00845024340) #14	PSD (ENSCAFG00845023806) #15	NFKB2 (ENSCAFG00845023626) #16	GBF1 (ENSCAFG00845023390) #17	PITX3 (ENSCAFG00845023314) #18	ELOVL3 (ENSCAFG00845023260) #19	NOLC1 (ENSCAFG00845023156) #20	PPRC1 (ENSCAFG00845022994) #21	LDB1 (ENSCAFG00845022765) #22	HPS6 (ENSCAFG00845022716)	ARMH3 (ENSCAFG00845022019) #24	KCNIP2 (ENSCAFG00845021527) #26	OGA (ENSCAFG00845021307) #27	OGA (ENSCAFG00845021211) #28	FGF8 (ENSCAFG00845021086) #29	FBXW4 (ENSCAFG00845020929) #30	DPCD (ENSCAFG00845020872) #31	POLL (ENSCAFG00845020759) #32	BTRC (ENSCAFG00845020497) #33	LBX1 (ENSCAFG00845020416) #35	TLX1 (ENSCAFG00845020381) #37	KAZALD1 (ENSCAFG00845020241)	SFXN3 (ENSCAFG00845020173)	PDZD7 (ENSCAFG00845019707)
Dingo	MODERN SPECIES	165	ARL3 (ENSCAFG00020010250) #7	TRIM8 (ENSCAFG00020010248) #8	SUFU (ENSCAFG00020010246) #9	ACTR1A (ENSCAFG00020010244) #11	MFSD13A (ENSCAFG00020010240)	CUEDC2 (ENSCAFG00020010222) #13	FBXL15 (ENSCAFG00020010220) #14	PSD (ENSCAFG00020010215) #15	NFKB2 (ENSCAFG00020010204) #16	ENSCAFG00020010159 #17	ENSCAFG00020010157 #17	PITX3 (ENSCAFG00020010150) #18	ELOVL3 (ENSCAFG00020010148) #19	NOLC1 (ENSCAFG00020010146) #20	PPRC1 (ENSCAFG00020010030) #21	LDB1 (ENSCAFG00020010016) #22	ARMH3 (ENSCAFG00020009246) #24	KCNIP2 (ENSCAFG00020009192) #26	OGA (ENSCAFG00020009186) #27	NPM3 (ENSCAFG00020009185) #28	FGF8 (ENSCAFG00020009181) #29	FBXW4 (ENSCAFG00020009166) #30	DPCD (ENSCAFG00020009157) #31	POLL (ENSCAFG00020009154) #32	BTRC (ENSCAFG00020009146) #33	LBX1 (ENSCAFG00020009135) #35	TLX1 (ENSCAFG00020009130) #37	KAZALD1 (ENSCAFG00020009128)	SFXN3 (ENSCAFG00020009123)	ENSCAFG00020009067	ENSCAFG00020009061
Red fox	MODERN SPECIES		WBP1L (ENSVVUG00000004241)	SFXN2 (ENSVVUG00000004226)	ARL3 (ENSVVUG00000004222) #7	TRIM8 (ENSVVUG00000004218) #8	SUFU (ENSVVUG00000004206) #9	ACTR1A (ENSVVUG00000003644) #11	MFSD13A (ENSVVUG00000003606)	CUEDC2 (ENSVVUG00000003580) #13	FBXL15 (ENSVVUG00000003576) #14	PSD (ENSVVUG00000003561) #15	NFKB2 (ENSVVUG00000002942) #16	GBF1 (ENSVVUG00000002840) #17	PITX3 (ENSVVUG00000002824) #18	ELOVL3 (ENSVVUG00000002813) #19	NOLC1 (ENSVVUG00000002661) #20	LDB1 (ENSVVUG00000002609) #22	PPRC1 (ENSVVUG00000002566) #21	ENSVVUG00000002549	ARMH3 (ENSVVUG00000002381) #24	KCNIP2 (ENSVVUG00000001064) #26	OGA (ENSVVUG00000000965) #27	NPM3 (ENSVVUG00000000945) #28	FGF8 (ENSVVUG00000000784) #29	FBXW4 (ENSVVUG00000000770) #30	DPCD (ENSVVUG00000000749) #31	POLL (ENSVVUG00000000738) #32	BTRC (ENSVVUG00000000703) #33	LBX1 (ENSVVUG00000000689) #35	TLX1 (ENSVVUG00000000649) #37	KAZALD1 (ENSVVUG00000000631)	SFXN3 (ENSVVUG00000000615)
Felidae	ANCESTRAL SPECIES	14	ENSGT00910000147323	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Panthera	ANCESTRAL SPECIES	8	ENSGT00940000157919 #8	ENSGT00930000152835	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Panthera_a	ANCESTRAL SPECIES	9	ENSGT00940000157919 #8	ENSGT00930000152835	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
lion	MODERN SPECIES	11	ENSPLOG00000017352	TRIM8 (ENSPLOG00000017378) #8	SUFU (ENSPLOG00000017511) #9	ACTR1A (ENSPLOG00000017687) #11	MFSD13A (ENSPLOG00000017752)	C10orf95 (ENSPLOG00000017781)	CUEDC2 (ENSPLOG00000017803) #13	FBXL15 (ENSPLOG00000017839) #14	PSD (ENSPLOG00000017905) #15	NFKB2 (ENSPLOG00000018109) #16	GBF1 (ENSPLOG00000018201) #17	PITX3 (ENSPLOG00000018227) #18	ELOVL3 (ENSPLOG00000018268) #19	NOLC1 (ENSPLOG00000018322) #20	PPRC1 (ENSPLOG00000018611) #21	LDB1 (ENSPLOG00000018677) #22	HPS6 (ENSPLOG00000018787)	ARMH3 (ENSPLOG00000018843) #24	ENSPLOG00000019012	KCNIP2 (ENSPLOG00000004987) #26	OGA (ENSPLOG00000005085) #27	NPM3 (ENSPLOG00000005157) #28	FGF8 (ENSPLOG00000005187) #29	FBXW4 (ENSPLOG00000005224) #30	DPCD (ENSPLOG00000005244) #31	POLL (ENSPLOG00000005264) #32	BTRC (ENSPLOG00000005315) #33	LBX1 (ENSPLOG00000005507) #35	TLX1 (ENSPLOG00000005518) #37	KAZALD1 (ENSPLOG00000005533)	SFXN3 (ENSPLOG00000005555)
leopard	MODERN SPECIES	33	TRIM8 (ENSPPRG00000008416) #8	ENSPPRG00000009259	SUFU (ENSPPRG00000010512) #9	ACTR1A (ENSPPRG00000011443) #11	MFSD13A (ENSPPRG00000011829)	C10orf95 (ENSPPRG00000019037)	CUEDC2 (ENSPPRG00000012133) #13	FBXL15 (ENSPPRG00000012372) #14	PSD (ENSPPRG00000016125) #15	NFKB2 (ENSPPRG00000024177) #16	GBF1 (ENSPPRG00000022832) #17	PITX3 (ENSPPRG00000000459) #18	ELOVL3 (ENSPPRG00000000726) #19	NOLC1 (ENSPPRG00000003072) #20	PPRC1 (ENSPPRG00000004274) #21	LDB1 (ENSPPRG00000004903) #22	ARMH3 (ENSPPRG00000006816) #24	KCNIP2 (ENSPPRG00000008687) #26	OGA (ENSPPRG00000012421) #27	ENSPPRG00000012611 #28	FGF8 (ENSPPRG00000013495) #29	FBXW4 (ENSPPRG00000014010) #30	DPCD (ENSPPRG00000014395) #31	POLL (ENSPPRG00000015944) #32	BTRC (ENSPPRG00000019213) #33	LBX1 (ENSPPRG00000019906) #35	TLX1 (ENSPPRG00000021686) #37	KAZALD1 (ENSPPRG00000025091)	SFXN3 (ENSPPRG00000025064)	PDZD7 (ENSPPRG00000024966)	LZTS2 (ENSPPRG00000024851)
Tiger	MODERN SPECIES	136	ARL3 (ENSPTIG00000021020) #7	ENSPTIG00000005748	TRIM8 (ENSPTIG00000020475) #8	ENSPTIG00000020388	SUFU (ENSPTIG00000019963) #9	ACTR1A (ENSPTIG00000019111) #11	MFSD13A (ENSPTIG00000018951)	CUEDC2 (ENSPTIG00000018568) #13	PSD (ENSPTIG00000018116) #15	ENSPTIG00000017841 #16	GBF1 (ENSPTIG00000017555) #17	ENSPTIG00000017198 #18	ELOVL3 (ENSPTIG00000016855) #19	NOLC1 (ENSPTIG00000014862) #20	PPRC1 (ENSPTIG00000013709) #21	LDB1 (ENSPTIG00000012571) #22	ARMH3 (ENSPTIG00000010893) #24	KCNIP2 (ENSPTIG00000009209) #26	OGA (ENSPTIG00000005989) #27	NPM3 (ENSPTIG00000005390) #28	FBXW4 (ENSPTIG00000004575) #30	DPCD (ENSPTIG00000000972) #31	POLL (ENSPTIG00000021663) #32	BTRC (ENSPTIG00000021271) #33	LBX1 (ENSPTIG00000020484) #35	SFXN3 (ENSPTIG00000020192)	ENSPTIG00000019929	TWNK (ENSPTIG00000019662)	MRPL43 (ENSPTIG00000019483)	SEMA4G (ENSPTIG00000018207)	SLF2 (ENSPTIG00000017770)
Cat	MODERN SPECIES	242	CYP17A1 (ENSFCAG00000001254)	WBP1L (ENSFCAG00000042551)	ARL3 (ENSFCAG00000001251) #7	TRIM8 (ENSFCAG00000028572) #8	SUFU (ENSFCAG00000001249) #9	ACTR1A (ENSFCAG00000001248) #11	MFSD13A (ENSFCAG00000023881)	CD2H10orf95 (ENSFCAG00000042728)	CUEDC2 (ENSFCAG00000001245) #13	FBXL15 (ENSFCAG00000001244) #14	PSD (ENSFCAG00000001243) #15	NFKB2 (ENSFCAG00000001242) #16	PITX3 (ENSFCAG00000026758) #18	GBF1 (ENSFCAG00000001241) #17	PPRC1 (ENSFCAG00000001238) #21	LDB1 (ENSFCAG00000001236) #22	HPS6 (ENSFCAG00000028998)	ARMH3 (ENSFCAG00000013244) #24	KCNIP2 (ENSFCAG00000013243) #26	OGA (ENSFCAG00000007179) #27	NPM3 (ENSFCAG00000007178) #28	FGF8 (ENSFCAG00000007177) #29	FBXW4 (ENSFCAG00000015703) #30	DPCD (ENSFCAG00000037081) #31	POLL (ENSFCAG00000015701) #32	BTRC (ENSFCAG00000015700) #33	LBX1 (ENSFCAG00000034106) #35	TLX1 (ENSFCAG00000046742) #37	KAZALD1 (ENSFCAG00000038365)	SFXN3 (ENSFCAG00000015697)	PDZD7 (ENSFCAG00000015696)
Laurasiatheria_c	ANCESTRAL SPECIES	15	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Chiroptera	ANCESTRAL SPECIES	6	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Microchiroptera	ANCESTRAL SPECIES	5	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Greater horseshoe bat	MODERN SPECIES	7	ARL3 (ENSRFEG00010017354) #7	TRIM8 (ENSRFEG00010017419) #8	SUFU (ENSRFEG00010017585) #9	ACTR1A (ENSRFEG00010017647) #11	MFSD13A (ENSRFEG00010017701)	C10orf95 (ENSRFEG00010017725)	CUEDC2 (ENSRFEG00010017742) #13	FBXL15 (ENSRFEG00010017762) #14	PSD (ENSRFEG00010017833) #15	NFKB2 (ENSRFEG00010017892) #16	GBF1 (ENSRFEG00010017963) #17	PITX3 (ENSRFEG00010018052) #18	ELOVL3 (ENSRFEG00010018094) #19	NOLC1 (ENSRFEG00010018127) #20	PPRC1 (ENSRFEG00010018145) #21	LDB1 (ENSRFEG00010018232) #22	HPS6 (ENSRFEG00010018300)	ARMH3 (ENSRFEG00010005361) #24	ENSRFEG00010005540	KCNIP2 (ENSRFEG00010005717) #26	OGA (ENSRFEG00010005973) #27	NPM3 (ENSRFEG00010006055) #28	FGF8 (ENSRFEG00010006132) #29	FBXW4 (ENSRFEG00010006255) #30	DPCD (ENSRFEG00010006295) #31	POLL (ENSRFEG00010006332) #32	BTRC (ENSRFEG00010006446) #33	ENSRFEG00010006625	LBX1 (ENSRFEG00010006637) #35	ENSRFEG00010006650	TLX1 (ENSRFEG00010006681) #37
Microbat	MODERN SPECIES	1099	ARL3 (ENSMLUG00000012603) #7	TRIM8 (ENSMLUG00000012594) #8	SUFU (ENSMLUG00000012590) #9	ACTR1A (ENSMLUG00000006356) #11	MFSD13A (ENSMLUG00000006346)	CUEDC2 (ENSMLUG00000006328) #13	FBXL15 (ENSMLUG00000006312) #14	PSD (ENSMLUG00000006298) #15	NFKB2 (ENSMLUG00000006287) #16	GBF1 (ENSMLUG00000006247) #17	ENSMLUG00000028577	PITX3 (ENSMLUG00000023193) #18	ELOVL3 (ENSMLUG00000028990) #19	NOLC1 (ENSMLUG00000001726) #20	PPRC1 (ENSMLUG00000006217) #21	LDB1 (ENSMLUG00000009237) #22	ARMH3 (ENSMLUG00000004996) #24	KCNIP2 (ENSMLUG00000004987) #26	OGA (ENSMLUG00000004970) #27	NPM3 (ENSMLUG00000004961) #28	FGF8 (ENSMLUG00000004959) #29	FBXW4 (ENSMLUG00000004952) #30	DPCD (ENSMLUG00000004947) #31	POLL (ENSMLUG00000004944) #32	BTRC (ENSMLUG00000004932) #33
Megabat	MODERN SPECIES	3921														NOLC1 (ENSPVAG00000004050) #20	PPRC1 (ENSPVAG00000004048) #21	LDB1 (ENSPVAG00000004047) #22	HPS6 (ENSPVAG00000004046)	ARMH3 (ENSPVAG00000004043) #24	KCNIP2 (ENSPVAG00000004042) #26	OGA (ENSPVAG00000004041) #27	NPM3 (ENSPVAG00000004038) #28	FGF8 (ENSPVAG00000004035) #29
Equus	ANCESTRAL SPECIES	9	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925.l #17	ENSGT01050000244965.a.d #19	ENSGT00940000156925.k #17	ENSGT00940000161801 #18	ENSGT01050000244965.a.c #19	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Donkey	MODERN SPECIES	11	C10orf95 (ENSEASG00005034483)	CUEDC2 (ENSEASG00005015234) #13	FBXL15 (ENSEASG00005015235) #14	PSD (ENSEASG00005015237) #15	NFKB2 (ENSEASG00005015242) #16	GBF1 (ENSEASG00005015245) #17	ENSEASG00005027010 #19	ENSEASG00005038682 #18	ENSEASG00005037872 #19	ENSEASG00005030491 #18	ENSEASG00005037516 #19	ENSEASG00005034292 #18	ENSEASG00005010383 #19	NOLC1 (ENSEASG00005007519) #20	PPRC1 (ENSEASG00005007583) #21	LDB1 (ENSEASG00005007592) #22	HPS6 (ENSEASG00005033362)	ARMH3 (ENSEASG00005007687) #24	KCNIP2 (ENSEASG00005007921) #26	OGA (ENSEASG00005008004) #27	NPM3 (ENSEASG00005008834) #28	FGF8 (ENSEASG00005008843) #29	FBXW4 (ENSEASG00005008860) #30	DPCD (ENSEASG00005008874) #31	POLL (ENSEASG00005008879) #32	BTRC (ENSEASG00005008887) #33	LBX1 (ENSEASG00005034916) #35	TLX1 (ENSEASG00005008902) #37	KAZALD1 (ENSEASG00005008906)	SFXN3 (ENSEASG00005008915)	PDZD7 (ENSEASG00005038524)
Horse	MODERN SPECIES		SFXN2 (ENSECAG00000024231)	ARL3 (ENSECAG00000000300) #7	TRIM8 (ENSECAG00000016770) #8	SUFU (ENSECAG00000019583) #9	ACTR1A (ENSECAG00000024503) #11	MFSD13A (ENSECAG00000014757)	PSD (ENSECAG00000007172) #15	FBXL15 (ENSECAG00000000576) #14	NFKB2 (ENSECAG00000019593) #16	GBF1 (ENSECAG00000023593) #17	ENSECAG00000047204 #17	PITX3 (ENSECAG00000022294) #18	ELOVL3 (ENSECAG00000023578) #19	NOLC1 (ENSECAG00000052236) #20	PPRC1 (ENSECAG00000009482) #21	LDB1 (ENSECAG00000012948) #22	HPS6 (ENSECAG00000004595)	ARMH3 (ENSECAG00000020347) #24	OGA (ENSECAG00000018731) #27	NPM3 (ENSECAG00000007524) #28	FGF8 (ENSECAG00000037372) #29	FBXW4 (ENSECAG00000020477) #30	DPCD (ENSECAG00000009848) #31	POLL (ENSECAG00000015282) #32	BTRC (ENSECAG00000022888) #33	LBX1 (ENSECAG00000032593) #35	TLX1 (ENSECAG00000013342) #37	KAZALD1 (ENSECAG00000013608)	SFXN3 (ENSECAG00000019285)	PDZD7 (ENSECAG00000012183)	LZTS2 (ENSECAG00000013288)
Artiodactyla	ANCESTRAL SPECIES	14	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00960000190004	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00990000203892
Suina	ANCESTRAL SPECIES	6	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00990000203892
Chacoan peccary	MODERN SPECIES	955	ENSCWAG00000013109	ARL3 (ENSCWAG00000013159) #7	TRIM8 (ENSCWAG00000013236) #8	SUFU (ENSCWAG00000013266) #9	ACTR1A (ENSCWAG00000013459) #11	MFSD13A (ENSCWAG00000013539)	C10orf95 (ENSCWAG00000013611)	CUEDC2 (ENSCWAG00000013653) #13	FBXL15 (ENSCWAG00000013741) #14	PSD (ENSCWAG00000013816) #15	NFKB2 (ENSCWAG00000014044) #16	GBF1 (ENSCWAG00000014118) #17	PITX3 (ENSCWAG00000014269) #18	ELOVL3 (ENSCWAG00000014311) #19	PPRC1 (ENSCWAG00000014410) #21	LDB1 (ENSCWAG00000015033) #22	HPS6 (ENSCWAG00000015092)	ARMH3 (ENSCWAG00000015108) #24	KCNIP2 (ENSCWAG00000015234) #26	OGA (ENSCWAG00000016757) #27	NPM3 (ENSCWAG00000016863) #28	FGF8 (ENSCWAG00000016899) #29	FBXW4 (ENSCWAG00000017072) #30	DPCD (ENSCWAG00000017144) #31	POLL (ENSCWAG00000017186) #32	BTRC (ENSCWAG00000017438) #33	LBX1 (ENSCWAG00000017504) #35	TLX1 (ENSCWAG00000017532) #37	KAZALD1 (ENSCWAG00000017546)	SFXN3 (ENSCWAG00000017574)	PDZD7 (ENSCWAG00000017620)
Pig	MODERN SPECIES	5	ENSSSCG00000041413	ENSSSCG00000037500	SUFU (ENSSSCG00000010586) #9	ACTR1A (ENSSSCG00000010585) #11	MFSD13A (ENSSSCG00000010584)	CUEDC2 (ENSSSCG00000033359) #13	FBXL15 (ENSSSCG00000038504) #14	PSD (ENSSSCG00000010581) #15	NFKB2 (ENSSSCG00000010580) #16	ENSSSCG00000054273	GBF1 (ENSSSCG00000010579) #17	PITX3 (ENSSSCG00000010578) #18	ELOVL3 (ENSSSCG00000010577) #19	NOLC1 (ENSSSCG00000010576) #20	PPRC1 (ENSSSCG00000010575) #21	LDB1 (ENSSSCG00000010574) #22	ARMH3 (ENSSSCG00000010571) #24	KCNIP2 (ENSSSCG00000010570) #26	OGA (ENSSSCG00000010569) #27	NPM3 (ENSSSCG00000010568) #28	FGF8 (ENSSSCG00000036146) #29	FBXW4 (ENSSSCG00000010566) #30	DPCD (ENSSSCG00000010565) #31	POLL (ENSSSCG00000010564) #32	ENSSSCG00000044625	BTRC (ENSSSCG00000010563) #33	LBX1 (ENSSSCG00000022693) #35	TLX1 (ENSSSCG00000010561) #37	KAZALD1 (ENSSSCG00000022429)	SFXN3 (ENSSSCG00000022005)	ENSSSCG00000053081
Artiodactyla_a	ANCESTRAL SPECIES	14	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00960000190004	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Camelidae	ANCESTRAL SPECIES	4	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Arabian camel	MODERN SPECIES	2	TRIM8 (ENSCDRG00005013435) #8	SUFU (ENSCDRG00005013614) #9	ACTR1A (ENSCDRG00005013729) #11	MFSD13A (ENSCDRG00005013849)	C10orf95 (ENSCDRG00005013904)	CUEDC2 (ENSCDRG00005013933) #13	FBXL15 (ENSCDRG00005014048) #14	PSD (ENSCDRG00005014081) #15	NFKB2 (ENSCDRG00005014133) #16	GBF1 (ENSCDRG00005014219) #17	PITX3 (ENSCDRG00005014430) #18	ELOVL3 (ENSCDRG00005014459) #19	ENSCDRG00005014525	NOLC1 (ENSCDRG00005014563) #20	PPRC1 (ENSCDRG00005014648) #21	LDB1 (ENSCDRG00005014831) #22	HPS6 (ENSCDRG00005014897)	ARMH3 (ENSCDRG00005014932) #24	KCNIP2 (ENSCDRG00005015279) #26	OGA (ENSCDRG00005017195) #27	NPM3 (ENSCDRG00005017294) #28	FGF8 (ENSCDRG00005017350) #29	FBXW4 (ENSCDRG00005017631) #30	DPCD (ENSCDRG00005017701) #31	POLL (ENSCDRG00005017726) #32	BTRC (ENSCDRG00005017970) #33	LBX1 (ENSCDRG00005018112) #35	TLX1 (ENSCDRG00005018131) #37	KAZALD1 (ENSCDRG00005018151)	SFXN3 (ENSCDRG00005018164)	ENSCDRG00005018196
Alpaca	MODERN SPECIES	1691																LDB1 (ENSVPAG00000011445) #22
Artiodactyla_b	ANCESTRAL SPECIES	13	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00960000190004	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Pecora	ANCESTRAL SPECIES	12	ENSGT01030000234641.b.a.a	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Percora_a	ANCESTRAL SPECIES	14	ENSGT01030000234641.b.a.a	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Bovidae	ANCESTRAL SPECIES	24	ENSGT01030000234641.b.a.a	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Bovinae	ANCESTRAL SPECIES	22	ENSGT01030000234641.b.a.a	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Bos	ANCESTRAL SPECIES	23	ENSGT01030000234641.b.a.a	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Bos_a	ANCESTRAL SPECIES	17	ENSGT01030000234641.b.a.a	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Wild yak	MODERN SPECIES	124	SFXN2 (ENSBMUG00000001395)	ARL3 (ENSBMUG00000001439) #7	TRIM8 (ENSBMUG00000001457) #8	SUFU (ENSBMUG00000001474) #9	ACTR1A (ENSBMUG00000001516) #11	MFSD13A (ENSBMUG00000001534)	CUEDC2 (ENSBMUG00000001561) #13	FBXL15 (ENSBMUG00000001578) #14	PSD (ENSBMUG00000001599) #15	NFKB2 (ENSBMUG00000001725) #16	GBF1 (ENSBMUG00000001789) #17	PITX3 (ENSBMUG00000001811) #18	ELOVL3 (ENSBMUG00000001815) #19	NOLC1 (ENSBMUG00000001853) #20	PPRC1 (ENSBMUG00000001946) #21	LDB1 (ENSBMUG00000001990) #22	HPS6 (ENSBMUG00000002004)	ARMH3 (ENSBMUG00000002100) #24	KCNIP2 (ENSBMUG00000002276) #26	OGA (ENSBMUG00000002507) #27	NPM3 (ENSBMUG00000002562) #28	FGF8 (ENSBMUG00000002582) #29	FBXW4 (ENSBMUG00000002636) #30	DPCD (ENSBMUG00000002662) #31	POLL (ENSBMUG00000002781) #32	BTRC (ENSBMUG00000002953) #33	TLX1 (ENSBMUG00000002998) #37	ENSBMUG00000003033	SFXN3 (ENSBMUG00000003051)	PDZD7 (ENSBMUG00000003120)	LZTS2 (ENSBMUG00000003163)
Domestic yak	MODERN SPECIES	17	ARL3 (ENSBGRG00000007507) #7	TRIM8 (ENSBGRG00000007476) #8	SUFU (ENSBGRG00000007124) #9	ACTR1A (ENSBGRG00000006965) #11	MFSD13A (ENSBGRG00000026225)	CUEDC2 (ENSBGRG00000026208) #13	FBXL15 (ENSBGRG00000026204) #14	PSD (ENSBGRG00000026193) #15	NFKB2 (ENSBGRG00000026174) #16	GBF1 (ENSBGRG00000026160) #17	PITX3 (ENSBGRG00000026147) #18	ELOVL3 (ENSBGRG00000026140) #19	ENSBGRG00000026136	NOLC1 (ENSBGRG00000026111) #20	PPRC1 (ENSBGRG00000026069) #21	LDB1 (ENSBGRG00000026032) #22	HPS6 (ENSBGRG00000026028)	ARMH3 (ENSBGRG00000026018) #24	ENSBGRG00000026004	KCNIP2 (ENSBGRG00000025831) #26	OGA (ENSBGRG00000025769) #27	NPM3 (ENSBGRG00000025751) #28	FGF8 (ENSBGRG00000025705) #29	FBXW4 (ENSBGRG00000025687) #30	DPCD (ENSBGRG00000025670) #31	POLL (ENSBGRG00000025605) #32	BTRC (ENSBGRG00000025472) #33	LBX1 (ENSBGRG00000025446) #35	TLX1 (ENSBGRG00000025436) #37	KAZALD1 (ENSBGRG00000025398)	SFXN3 (ENSBGRG00000025373)
Bos_b	ANCESTRAL SPECIES	23	ENSGT01030000234641.b.a.a	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Cow	MODERN SPECIES	18	SFXN2 (ENSBTAG00000004321)	ARL3 (ENSBTAG00000004318) #7	TRIM8 (ENSBTAG00000021071) #8	SUFU (ENSBTAG00000021068) #9	ACTR1A (ENSBTAG00000021067) #11	MFSD13A (ENSBTAG00000021065)	CUEDC2 (ENSBTAG00000002501) #13	FBXL15 (ENSBTAG00000002500) #14	PSD (ENSBTAG00000003580) #15	NFKB2 (ENSBTAG00000006017) #16	GBF1 (ENSBTAG00000006014) #17	PITX3 (ENSBTAG00000015702) #18	ELOVL3 (ENSBTAG00000015700) #19	NOLC1 (ENSBTAG00000007435) #20	PPRC1 (ENSBTAG00000007427) #21	LDB1 (ENSBTAG00000005780) #22	HPS6 (ENSBTAG00000021942)	ARMH3 (ENSBTAG00000013120) #24	KCNIP2 (ENSBTAG00000016343) #26	OGA (ENSBTAG00000016336) #27	NPM3 (ENSBTAG00000016335) #28	FGF8 (ENSBTAG00000001530) #29	ENSBTAG00000053939	FBXW4 (ENSBTAG00000003579) #30	DPCD (ENSBTAG00000003578) #31	POLL (ENSBTAG00000003576) #32	BTRC (ENSBTAG00000007476) #33	LBX1 (ENSBTAG00000002261) #35	TLX1 (ENSBTAG00000011080) #37	KAZALD1 (ENSBTAG00000011489)	SFXN3 (ENSBTAG00000005015)
Hybrid Bos Indicus	MODERN SPECIES	18	SFXN2 (ENSBIXG00005013232)	ARL3 (ENSBIXG00005013209) #7	TRIM8 (ENSBIXG00005013186) #8	SUFU (ENSBIXG00005013143) #9	ACTR1A (ENSBIXG00005001499) #11	MFSD13A (ENSBIXG00005013036)	CUEDC2 (ENSBIXG00005012994) #13	FBXL15 (ENSBIXG00005012972) #14	PSD (ENSBIXG00005012950) #15	NFKB2 (ENSBIXG00005012914) #16	GBF1 (ENSBIXG00005012824) #17	PITX3 (ENSBIXG00005012731) #18	ELOVL3 (ENSBIXG00005001400) #19	NOLC1 (ENSBIXG00005005482) #20	PPRC1 (ENSBIXG00005012646) #21	LDB1 (ENSBIXG00005012537) #22	HPS6 (ENSBIXG00005000333)	ARMH3 (ENSBIXG00005012509) #24	KCNIP2 (ENSBIXG00005012451) #26	OGA (ENSBIXG00005001256) #27	NPM3 (ENSBIXG00005012095) #28	FGF8 (ENSBIXG00005012077) #29	FBXW4 (ENSBIXG00005012014) #30	ENSBIXG00005001225	DPCD (ENSBIXG00005011989) #31	POLL (ENSBIXG00005000418) #32	BTRC (ENSBIXG00005011868) #33	LBX1 (ENSBIXG00005011727) #35	TLX1 (ENSBIXG00005001152) #37	KAZALD1 (ENSBIXG00005011702)	SFXN3 (ENSBIXG00005011674)
American bison	MODERN SPECIES	3316	ARL3 (ENSBBBG00000022525) #7	TRIM8 (ENSBBBG00000022513) #8	SUFU (ENSBBBG00000022501) #9	ACTR1A (ENSBBBG00000022481) #11	MFSD13A (ENSBBBG00000005916)	CUEDC2 (ENSBBBG00000022416) #13	FBXL15 (ENSBBBG00000022406) #14	PSD (ENSBBBG00000022390) #15	ENSBBBG00000022351	NFKB2 (ENSBBBG00000005894) #16	GBF1 (ENSBBBG00000022275) #17	PITX3 (ENSBBBG00000022213) #18	ELOVL3 (ENSBBBG00000022200) #19	NOLC1 (ENSBBBG00000005854) #20	PPRC1 (ENSBBBG00000007281) #21	LDB1 (ENSBBBG00000005829) #22	HPS6 (ENSBBBG00000022074)	ARMH3 (ENSBBBG00000007684) #24	KCNIP2 (ENSBBBG00000022027) #26	OGA (ENSBBBG00000005781) #27	NPM3 (ENSBBBG00000021685) #28	FGF8 (ENSBBBG00000005761) #29	FBXW4 (ENSBBBG00000021667) #30	DPCD (ENSBBBG00000021651) #31	POLL (ENSBBBG00000021635) #32	BTRC (ENSBBBG00000021525) #33	LBX1 (ENSBBBG00000021437) #35	TLX1 (ENSBBBG00000021434) #37	KAZALD1 (ENSBBBG00000021426)	SFXN3 (ENSBBBG00000021411)	PDZD7 (ENSBBBG00000021381)
Caprinae	ANCESTRAL SPECIES	19	ENSGT01030000234641.b.a.a	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Goat	MODERN SPECIES	18	SFXN2 (ENSCHIG00000005366)	ARL3 (ENSCHIG00000012000) #7	TRIM8 (ENSCHIG00000012123) #8	SUFU (ENSCHIG00000021986) #9	ACTR1A (ENSCHIG00000014540) #11	MFSD13A (ENSCHIG00000022237)	CUEDC2 (ENSCHIG00000010950) #13	FBXL15 (ENSCHIG00000017809) #14	PSD (ENSCHIG00000016284) #15	NFKB2 (ENSCHIG00000019967) #16	GBF1 (ENSCHIG00000006795) #17	PITX3 (ENSCHIG00000005050) #18	ELOVL3 (ENSCHIG00000020567) #19	NOLC1 (ENSCHIG00000016755) #20	PPRC1 (ENSCHIG00000011471) #21	LDB1 (ENSCHIG00000012111) #22	ENSCHIG00000016117	HPS6 (ENSCHIG00000002581)	ARMH3 (ENSCHIG00000021008) #24	KCNIP2 (ENSCHIG00000023969) #26	OGA (ENSCHIG00000012695) #27	ENSCHIG00000024055 #28	FGF8 (ENSCHIG00000016976) #29	FBXW4 (ENSCHIG00000018380) #30	DPCD (ENSCHIG00000020911) #31	POLL (ENSCHIG00000003400) #32	BTRC (ENSCHIG00000016955) #33	LBX1 (ENSCHIG00000023740) #35	TLX1 (ENSCHIG00000017143) #37	KAZALD1 (ENSCHIG00000020364)	SFXN3 (ENSCHIG00000007598)
Rambouillet Sheep	MODERN SPECIES	14	SFXN2 (ENSOARG00020006982)	ARL3 (ENSOARG00020006754) #7	TRIM8 (ENSOARG00020006668) #8	SUFU (ENSOARG00020006428) #9	ACTR1A (ENSOARG00020006381) #11	MFSD13A (ENSOARG00020006356)	CUEDC2 (ENSOARG00020025536) #13	FBXL15 (ENSOARG00020025531) #14	PSD (ENSOARG00020025517) #15	NFKB2 (ENSOARG00020025505) #16	GBF1 (ENSOARG00020025489) #17	PITX3 (ENSOARG00020025475) #18	ELOVL3 (ENSOARG00020025469) #19	NOLC1 (ENSOARG00020025460) #20	PPRC1 (ENSOARG00020025416) #21	LDB1 (ENSOARG00020025397) #22	HPS6 (ENSOARG00020025382)	ARMH3 (ENSOARG00020025366) #24	KCNIP2 (ENSOARG00020025029) #26	OGA (ENSOARG00020024941) #27	NPM3 (ENSOARG00020024924) #28	FGF8 (ENSOARG00020024835) #29	ENSOARG00020024820	FBXW4 (ENSOARG00020024790) #30	DPCD (ENSOARG00020024779) #31	POLL (ENSOARG00020024664) #32	BTRC (ENSOARG00020024573) #33	LBX1 (ENSOARG00020024551) #35	TLX1 (ENSOARG00020024541) #37	KAZALD1 (ENSOARG00020024525)	SFXN3 (ENSOARG00020024496)
Siberian musk deer	MODERN SPECIES	1162	SFXN2 (ENSMMSG00000023456)	ARL3 (ENSMMSG00000023474) #7	TRIM8 (ENSMMSG00000023486) #8	SUFU (ENSMMSG00000023494) #9	ACTR1A (ENSMMSG00000023508) #11	MFSD13A (ENSMMSG00000023523)	CUEDC2 (ENSMMSG00000023534) #13	FBXL15 (ENSMMSG00000023546) #14	PSD (ENSMMSG00000023561) #15	NFKB2 (ENSMMSG00000023577) #16	GBF1 (ENSMMSG00000023605) #17	PITX3 (ENSMMSG00000023635) #18	ELOVL3 (ENSMMSG00000023638) #19	NOLC1 (ENSMMSG00000023644) #20	PPRC1 (ENSMMSG00000023667) #21	LDB1 (ENSMMSG00000023714) #22	HPS6 (ENSMMSG00000023722)	ARMH3 (ENSMMSG00000023729) #24	KCNIP2 (ENSMMSG00000023762) #26	OGA (ENSMMSG00000023879) #27	NPM3 (ENSMMSG00000023905) #28	FGF8 (ENSMMSG00000016398) #29	FBXW4 (ENSMMSG00000016591) #30	DPCD (ENSMMSG00000016659) #31	POLL (ENSMMSG00000016722) #32	BTRC (ENSMMSG00000016899) #33	ENSMMSG00000017075	ENSMMSG00000017086	LBX1 (ENSMMSG00000017109) #35	ENSMMSG00000017131	TLX1 (ENSMMSG00000017162) #37
Yarkand deer	MODERN SPECIES	6	ARL3 (ENSCHYG00000014398) #7	TRIM8 (ENSCHYG00000014350) #8	SUFU (ENSCHYG00000014200) #9	ACTR1A (ENSCHYG00000014018) #11	MFSD13A (ENSCHYG00000013882)	CUEDC2 (ENSCHYG00000013695) #13	FBXL15 (ENSCHYG00000013637) #14	PSD (ENSCHYG00000013510) #15	NFKB2 (ENSCHYG00000013218) #16	ENSCHYG00000013154	GBF1 (ENSCHYG00000012906) #17	PITX3 (ENSCHYG00000012861) #18	ELOVL3 (ENSCHYG00000012788) #19	NOLC1 (ENSCHYG00000012710) #20	PPRC1 (ENSCHYG00000012117) #21	LDB1 (ENSCHYG00000011992) #22	HPS6 (ENSCHYG00000011978)	ARMH3 (ENSCHYG00000011524) #24	KCNIP2 (ENSCHYG00000011315) #26	OGA (ENSCHYG00000011095) #27	NPM3 (ENSCHYG00000011000) #28	FGF8 (ENSCHYG00000010585) #29	FBXW4 (ENSCHYG00000010417) #30	DPCD (ENSCHYG00000010353) #31	POLL (ENSCHYG00000010092) #32	BTRC (ENSCHYG00000009464) #33	LBX1 (ENSCHYG00000009391) #35	TLX1 (ENSCHYG00000009316) #37	KAZALD1 (ENSCHYG00000009247)	SFXN3 (ENSCHYG00000008801)	PDZD7 (ENSCHYG00000008700)
Cetacea	ANCESTRAL SPECIES	15	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00960000190004	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Blue whale	MODERN SPECIES	7	ARL3 (ENSBMSG00010015549) #7	TRIM8 (ENSBMSG00010015579) #8	SUFU (ENSBMSG00010015610) #9	ACTR1A (ENSBMSG00010015668) #11	MFSD13A (ENSBMSG00010015734)	CUEDC2 (ENSBMSG00010015781) #13	FBXL15 (ENSBMSG00010015838) #14	PSD (ENSBMSG00010015899) #15	ENSBMSG00010016052 #16	GBF1 (ENSBMSG00010016085) #17	PITX3 (ENSBMSG00010016125) #18	ELOVL3 (ENSBMSG00010016149) #19	NOLC1 (ENSBMSG00010016181) #20	ENSBMSG00010016224	PPRC1 (ENSBMSG00010016252) #21	LDB1 (ENSBMSG00010016310) #22	HPS6 (ENSBMSG00010016356)	ARMH3 (ENSBMSG00010016376) #24	KCNIP2 (ENSBMSG00010016543) #26	OGA (ENSBMSG00010018215) #27	NPM3 (ENSBMSG00010018271) #28	FGF8 (ENSBMSG00010018314) #29	FBXW4 (ENSBMSG00010018485) #30	DPCD (ENSBMSG00010018596) #31	POLL (ENSBMSG00010018641) #32	BTRC (ENSBMSG00010018955) #33	ENSBMSG00010019090	LBX1 (ENSBMSG00010019122) #35	TLX1 (ENSBMSG00010019148) #37	KAZALD1 (ENSBMSG00010019182)	SFXN3 (ENSBMSG00010019238)
Odontoceti	ANCESTRAL SPECIES	14	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00960000190004	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00950000183143.c.a.p.a.a	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a
Sperm whale	MODERN SPECIES	12	AS3MT (ENSPCTG00005020508)	BORCS7 (ENSPCTG00005020478)	CYP17A1 (ENSPCTG00005020262)	WBP1L (ENSPCTG00005020108)	ARL3 (ENSPCTG00005020073) #7	GBF1 (ENSPCTG00005019758) #17	NFKB2 (ENSPCTG00005019685) #16	PSD (ENSPCTG00005019477) #15	FBXL15 (ENSPCTG00005019435) #14	CUEDC2 (ENSPCTG00005019392) #13	MFSD13A (ENSPCTG00005019320)	ACTR1A (ENSPCTG00005019239) #11	ENSPCTG00005019221	NOLC1 (ENSPCTG00005019168) #20	OGA (ENSPCTG00005019093) #27	LDB1 (ENSPCTG00005019052) #22	HPS6 (ENSPCTG00005019039)	ARMH3 (ENSPCTG00005018935) #24	FBXW4 (ENSPCTG00005018820) #30	DPCD (ENSPCTG00005018790) #31	POLL (ENSPCTG00005018631) #32	ENSPCTG00005018571	BTRC (ENSPCTG00005018325) #33	KAZALD1 (ENSPCTG00005018258)	SLF2 (ENSPCTG00005018174)	PAX2 (ENSPCTG00005017976)	HIF1AN (ENSPCTG00005017931)	NDUFB8 (ENSPCTG00005017856)	SEC31B (ENSPCTG00005017805)	WNT8B (ENSPCTG00005017722)	SCD (ENSPCTG00005017655)
Odontoceti_a	ANCESTRAL SPECIES	11	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00960000190004	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00950000183143.c.a.p.a.a	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a
Dolphin	MODERN SPECIES	582														NOLC1 (ENSTTRG00000014974) #20	PPRC1 (ENSTTRG00000014966) #21	ENSTTRG00000014960 #22	ARMH3 (ENSTTRG00000014955) #24	KCNIP2 (ENSTTRG00000014952) #26	OGA (ENSTTRG00000014946) #27	ENSTTRG00000014942	FGF8 (ENSTTRG00000014939) #29	FBXW4 (ENSTTRG00000014933) #30	DPCD (ENSTTRG00000014929) #31	POLL (ENSTTRG00000014923) #32	BTRC (ENSTTRG00000014908) #33	LBX1 (ENSTTRG00000014899) #35
Odontoceti_b	ANCESTRAL SPECIES	14	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00960000190004	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00950000183143.c.a.p.a.a	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a
Monodontidae	ANCESTRAL SPECIES	14	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00910000145900	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00960000190004	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00950000183143.c.a.p.a.a	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a
Narwhal	MODERN SPECIES	311	SUFU (ENSMMNG00015013204) #9	ACTR1A (ENSMMNG00015013180) #11	MFSD13A (ENSMMNG00015013161)	C10orf95 (ENSMMNG00015013148)	CUEDC2 (ENSMMNG00015013134) #13	FBXL15 (ENSMMNG00015013118) #14	PSD (ENSMMNG00015013097) #15	NFKB2 (ENSMMNG00015013070) #16	GBF1 (ENSMMNG00015013050) #17	PITX3 (ENSMMNG00015013029) #18	ELOVL3 (ENSMMNG00015013018) #19	ENSMMNG00015013008	ENSMMNG00015013002	NOLC1 (ENSMMNG00015012973) #20	PPRC1 (ENSMMNG00015012955) #21	LDB1 (ENSMMNG00015012934) #22	HPS6 (ENSMMNG00015012924)	ARMH3 (ENSMMNG00015012888) #24	KCNIP2 (ENSMMNG00015012789) #26	OGA (ENSMMNG00015012693) #27	NPM3 (ENSMMNG00015012666) #28	FGF8 (ENSMMNG00015012625) #29	FBXW4 (ENSMMNG00015012596) #30	DPCD (ENSMMNG00015012580) #31	POLL (ENSMMNG00015012562) #32	ENSMMNG00015012545	BTRC (ENSMMNG00015012491) #33	LBX1 (ENSMMNG00015012454) #35	ENSMMNG00015012448	TLX1 (ENSMMNG00015012435) #37	KAZALD1 (ENSMMNG00015012419)
Beluga whale	MODERN SPECIES	65	TRIM8 (ENSDLEG00000009697) #8	SUFU (ENSDLEG00000009757) #9	ACTR1A (ENSDLEG00000009891) #11	MFSD13A (ENSDLEG00000009947)	CUEDC2 (ENSDLEG00000010002) #13	FBXL15 (ENSDLEG00000010029) #14	PSD (ENSDLEG00000010100) #15	NFKB2 (ENSDLEG00000010672) #16	GBF1 (ENSDLEG00000010758) #17	PITX3 (ENSDLEG00000011013) #18	ELOVL3 (ENSDLEG00000011030) #19	ENSDLEG00000011076	NOLC1 (ENSDLEG00000011092) #20	ENSDLEG00000011138	PPRC1 (ENSDLEG00000011163) #21	LDB1 (ENSDLEG00000011231) #22	HPS6 (ENSDLEG00000011254)	ARMH3 (ENSDLEG00000011308) #24	KCNIP2 (ENSDLEG00000011996) #26	MGEA5 (ENSDLEG00000012761) #27	NPM3 (ENSDLEG00000014430) #28	FGF8 (ENSDLEG00000014445) #29	FBXW4 (ENSDLEG00000014542) #30	DPCD (ENSDLEG00000014637) #31	POLL (ENSDLEG00000014662) #32	BTRC (ENSDLEG00000014853) #33	ENSDLEG00000016243	LBX1 (ENSDLEG00000016256) #35	ENSDLEG00000016263	TLX1 (ENSDLEG00000016266) #37	KAZALD1 (ENSDLEG00000016276)
Vaquita	MODERN SPECIES	7	ARL3 (ENSPSNG00000017986) #7	ENSPSNG00000017958	TRIM8 (ENSPSNG00000017907) #8	SUFU (ENSPSNG00000017847) #9	ACTR1A (ENSPSNG00000017727) #11	MFSD13A (ENSPSNG00000017652)	CUEDC2 (ENSPSNG00000017566) #13	FBXL15 (ENSPSNG00000017495) #14	PSD (ENSPSNG00000017329) #15	NFKB2 (ENSPSNG00000017232) #16	GBF1 (ENSPSNG00000017028) #17	PITX3 (ENSPSNG00000016915) #18	ELOVL3 (ENSPSNG00000016876) #19	NOLC1 (ENSPSNG00000016800) #20	PPRC1 (ENSPSNG00000016660) #21	LDB1 (ENSPSNG00000016526) #22	HPS6 (ENSPSNG00000016490)	ARMH3 (ENSPSNG00000016447) #24	KCNIP2 (ENSPSNG00000015521) #26	OGA (ENSPSNG00000015199) #27	NPM3 (ENSPSNG00000015111) #28	FGF8 (ENSPSNG00000014763) #29	FBXW4 (ENSPSNG00000014655) #30	DPCD (ENSPSNG00000014573) #31	POLL (ENSPSNG00000014325) #32	ENSPSNG00000014239	BTRC (ENSPSNG00000013992) #33	LBX1 (ENSPSNG00000013867) #35	ENSPSNG00000013837	TLX1 (ENSPSNG00000013783) #37	KAZALD1 (ENSPSNG00000013727)
Atlantogenata	ANCESTRAL SPECIES	10	ENSGT01030000234641.b.a.a	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Afrotheria	ANCESTRAL SPECIES	4	ENSGT01030000234641.b.a.a	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Tenrec	MODERN SPECIES	1053																ENSETEG00000006332 #22	HPS6 (ENSETEG00000006328)	TPPP2 (ENSETEG00000006327)	ARMH3 (ENSETEG00000006317) #24	ENSETEG00000006315 #26	OGA (ENSETEG00000006311) #27	NPM3 (ENSETEG00000006307) #28
Afrotheria_a	ANCESTRAL SPECIES	4	ENSGT01030000234641.b.a.a	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00950000183002.C
Elephant	MODERN SPECIES	3	SFXN2 (ENSLAFG00000005072)	ARL3 (ENSLAFG00000005070) #7	TRIM8 (ENSLAFG00000011454) #8	SUFU (ENSLAFG00000005068) #9	ACTR1A (ENSLAFG00000005064) #11	MFSD13A (ENSLAFG00000005063)	CUEDC2 (ENSLAFG00000006828) #13	FBXL15 (ENSLAFG00000006822) #14	PSD (ENSLAFG00000006814) #15	NFKB2 (ENSLAFG00000006805) #16	GBF1 (ENSLAFG00000006789) #17	PITX3 (ENSLAFG00000006787) #18	ELOVL3 (ENSLAFG00000006785) #19	NOLC1 (ENSLAFG00000014245) #20	PPRC1 (ENSLAFG00000014232) #21	LDB1 (ENSLAFG00000023028) #22	HPS6 (ENSLAFG00000026941)	ARMH3 (ENSLAFG00000016076) #24	KCNIP2 (ENSLAFG00000016066) #26	OGA (ENSLAFG00000016050) #27	NPM3 (ENSLAFG00000023022) #28	FGF8 (ENSLAFG00000028373) #29	FBXW4 (ENSLAFG00000009480) #30	DPCD (ENSLAFG00000009478) #31	POLL (ENSLAFG00000009472) #32	BTRC (ENSLAFG00000017122) #33	LBX1 (ENSLAFG00000012214) #35	TLX1 (ENSLAFG00000004179) #37	ENSLAFG00000030369	KAZALD1 (ENSLAFG00000004171)	SFXN3 (ENSLAFG00000012767)
Hyrax	MODERN SPECIES	8903																LDB1 (ENSPCAG00000009603) #22
Xenarthra	ANCESTRAL SPECIES	903																ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000159518 #29
Sloth	MODERN SPECIES	7418																LDB1 (ENSCHOG00000009395) #22
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	2791												GADL1 (ENSDNOG00000044171)	TGFBR2 (ENSDNOG00000031774)	ENSDNOG00000037067	RBMS3 (ENSDNOG00000016645)	ENSDNOG00000044776 #22
Armadillo	MODERN SPECIES	308																LDB1 (ENSDNOG00000032439) #22	ENSDNOG00000036024	HPS6 (ENSDNOG00000025542)	ARMH3 (ENSDNOG00000018889) #24	KCNIP2 (ENSDNOG00000018883) #26	OGA (ENSDNOG00000018879) #27	FGF8 (ENSDNOG00000037724) #29
Marsupialia	ANCESTRAL SPECIES		ENSGT01030000234641.b.a.a	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a	ENSGT00990000203892
Marsupialia_b	ANCESTRAL SPECIES		ENSGT01030000234641.b.a.a.k	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a.k	ENSGT00990000203892
Diprotodontia	ANCESTRAL SPECIES	6	ENSGT01030000234641.b.a.a.k	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a.k	ENSGT00990000203892
Wallaby	MODERN SPECIES	9933																LDB1 (ENSMEUG00000009854) #22
Diprotodontia_a	ANCESTRAL SPECIES	7	ENSGT01030000234641.b.a.a.k	ENSGT00940000155737.b #7	ENSGT00940000157919 #8	ENSGT00390000009747 #9	ENSGT00940000155782 #11	ENSGT00940000160317	ENSGT00390000014513 #13	ENSGT00940000160250 #14	ENSGT00940000155061.a.b #15	ENSGT00940000160968 #16	ENSGT00940000156925 #17	ENSGT00940000161801 #18	ENSGT01050000244965.a #19	ENSGT00730000111092 #20	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a.k	ENSGT00990000203892
Common wonbat	MODERN SPECIES	581	SFXN2 (ENSVURG00010001410)	ARL3 (ENSVURG00010001426) #7	TRIM8 (ENSVURG00010001450) #8	SUFU (ENSVURG00010001480) #9	ACTR1A (ENSVURG00010001535) #11	MFSD13A (ENSVURG00010001576)	CUEDC2 (ENSVURG00010001585) #13	FBXL15 (ENSVURG00010001595) #14	PSD (ENSVURG00010001616) #15	NFKB2 (ENSVURG00010001689) #16	GBF1 (ENSVURG00010001734) #17	PITX3 (ENSVURG00010001798) #18	ELOVL3 (ENSVURG00010001812) #19	NOLC1 (ENSVURG00010001912) #20	ENSVURG00010001928 #21	LDB1 (ENSVURG00010001956) #22	HPS6 (ENSVURG00010002006)	ARMH3 (ENSVURG00010002048) #24	KCNIP2 (ENSVURG00010002189) #26	OGA (ENSVURG00010002511) #27	NPM3 (ENSVURG00010002534) #28	FGF8 (ENSVURG00010002548) #29	ENSVURG00010002614 #30	DPCD (ENSVURG00010002630) #31	POLL (ENSVURG00010002645) #32	BTRC (ENSVURG00010002745) #33	LBX1 (ENSVURG00010002823) #35	TLX1 (ENSVURG00010002839) #37	KAZALD1 (ENSVURG00010002921)	ENSVURG00010002939	LZTS2 (ENSVURG00010002997)
koala	MODERN SPECIES	6	WBP1L (ENSPCIG00000018031)	ARL3 (ENSPCIG00000028982) #7	TRIM8 (ENSPCIG00000028984) #8	SUFU (ENSPCIG00000028985) #9	ACTR1A (ENSPCIG00000028989) #11	MFSD13A (ENSPCIG00000028991)	CUEDC2 (ENSPCIG00000028992) #13	FBXL15 (ENSPCIG00000028994) #14	PSD (ENSPCIG00000028997) #15	NFKB2 (ENSPCIG00000028999) #16	GBF1 (ENSPCIG00000029004) #17	PITX3 (ENSPCIG00000029009) #18	ELOVL3 (ENSPCIG00000029010) #19	NOLC1 (ENSPCIG00000029012) #20	ENSPCIG00000029013 #21	LDB1 (ENSPCIG00000029016) #22	HPS6 (ENSPCIG00000029018)	ARMH3 (ENSPCIG00000029021) #24	KCNIP2 (ENSPCIG00000029025) #26	OGA (ENSPCIG00000009619) #27	FGF8 (ENSPCIG00000009616) #29	FBXW4 (ENSPCIG00000029029) #30	DPCD (ENSPCIG00000029028) #31	POLL (ENSPCIG00000029031) #32	BTRC (ENSPCIG00000029037) #33	LBX1 (ENSPCIG00000012981) #35	TLX1 (ENSPCIG00000031947) #37	KAZALD1 (ENSPCIG00000003284)	ENSPCIG00000002751	ENSPCIG00000002730	PDZD7 (ENSPCIG00000002702)
Tasmanian devil	MODERN SPECIES	1	ENSSHAG00000018726	ARL3 (ENSSHAG00000018738) #7	TRIM8 (ENSSHAG00000031236) #8	SUFU (ENSSHAG00000018777) #9	ACTR1A (ENSSHAG00000018823) #11	MFSD13A (ENSSHAG00000018826)	CUEDC2 (ENSSHAG00000018836) #13	FBXL15 (ENSSHAG00000028197) #14	PSD (ENSSHAG00000018843) #15	NFKB2 (ENSSHAG00000018852) #16	GBF1 (ENSSHAG00000018856) #17	PITX3 (ENSSHAG00000027003) #18	ELOVL3 (ENSSHAG00000018892) #19	NOLC1 (ENSSHAG00000002222) #20	ENSSHAG00000003350 #21	LDB1 (ENSSHAG00000004146) #22	HPS6 (ENSSHAG00000020530)	ARMH3 (ENSSHAG00000005390) #24	KCNIP2 (ENSSHAG00000026676) #26	OGA (ENSSHAG00000008257) #27	NPM3 (ENSSHAG00000008567) #28	FGF8 (ENSSHAG00000008652) #29	FBXW4 (ENSSHAG00000009269) #30	DPCD (ENSSHAG00000025520) #31	POLL (ENSSHAG00000010289) #32	BTRC (ENSSHAG00000010653) #33	LBX1 (ENSSHAG00000012692) #35	TLX1 (ENSSHAG00000026892) #37	KAZALD1 (ENSSHAG00000031990)	SFXN3 (ENSSHAG00000025221)	PDZD7 (ENSSHAG00000013654)
Opossum	MODERN SPECIES		ENSMODG00000011224 #7	TRIM8 (ENSMODG00000011232) #8	SUFU (ENSMODG00000011242) #9	ACTR1A (ENSMODG00000011256) #11	MFSD13A (ENSMODG00000011271)	ENSMODG00000011276 #13	ENSMODG00000039118	FBXL15 (ENSMODG00000011280) #14	PSD (ENSMODG00000011313) #15	ENSMODG00000049569 #16	GBF1 (ENSMODG00000011370) #17	ENSMODG00000011378 #19	PITX3 (ENSMODG00000045989) #18	NOLC1 (ENSMODG00000011434) #20	ENSMODG00000011467 #21	LDB1 (ENSMODG00000011500) #22	HPS6 (ENSMODG00000049767)	ARMH3 (ENSMODG00000011512) #24	ENSMODG00000019596	KCNIP2 (ENSMODG00000011638) #26	OGA (ENSMODG00000011681) #27	NPM3 (ENSMODG00000011689) #28	FGF8 (ENSMODG00000011718) #29	FBXW4 (ENSMODG00000011732) #30	DPCD (ENSMODG00000011742) #31	POLL (ENSMODG00000011757) #32	BTRC (ENSMODG00000011788) #33	ENSMODG00000027979	ENSMODG00000046533	LBX1 (ENSMODG00000044699) #35	TLX1 (ENSMODG00000011900) #37
Platypus	MODERN SPECIES	7	SFXN2 (ENSOANG00000001649)	ARL3 (ENSOANG00000001653) #7	TRIM8 (ENSOANG00000001654) #8	SUFU (ENSOANG00000001655) #9	ACTR1A (ENSOANG00000008105) #11	MFSD13A (ENSOANG00000003445)	CUEDC2 (ENSOANG00000001988) #13	FBXL15 (ENSOANG00000001987) #14	PSD (ENSOANG00000044398) #15	NFKB2 (ENSOANG00000006254) #16	GBF1 (ENSOANG00000007818) #17	PITX3 (ENSOANG00000039250) #18	ELOVL3 (ENSOANG00000007823) #19	NOLC1 (ENSOANG00000007824) #20	ENSOANG00000007826 #21	LDB1 (ENSOANG00000007827) #22	ARMH3 (ENSOANG00000007830) #24	KCNIP2 (ENSOANG00000039579) #26	OGA (ENSOANG00000004474) #27	NPM3 (ENSOANG00000039490) #28	FGF8 (ENSOANG00000048473) #29	FBXW4 (ENSOANG00000007313) #30	DPCD (ENSOANG00000045090) #31	POLL (ENSOANG00000007315) #32	BTRC (ENSOANG00000007316) #33	LBX1 (ENSOANG00000044340) #35	TLX1 (ENSOANG00000007318) #37	KAZALD1 (ENSOANG00000047060)	SFXN3 (ENSOANG00000007319)	PDZD7 (ENSOANG00000007308)	LZTS2 (ENSOANG00000046553)
Sauria	ANCESTRAL SPECIES	8	ENSGT00530000063604.A	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT01100000263518.A.b	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00940000162611.b	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000164095	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B
Archelosauria	ANCESTRAL SPECIES	10	ENSGT00730000111173	ENSGT00530000063604.A	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT01100000263518.A.b	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000164095	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B
Cryptodira	ANCESTRAL SPECIES	6	ENSGT00730000111173	ENSGT00530000063604.A	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT01100000263518.A.b	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000164095	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a
Testudinoidea	ANCESTRAL SPECIES	2	ENSGT00730000111173	ENSGT00530000063604.A	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT01100000263518.A.b	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000164095	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B
Emydidae	ANCESTRAL SPECIES	6	ENSGT00730000111173	ENSGT00530000063604.A	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT01100000263518.A.b	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.b	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000164095	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B
Three-toed box turtle	MODERN SPECIES	39	HPSE2 (ENSTMTG00000000452)	HPS1 (ENSTMTG00000000563)	PYROXD2 (ENSTMTG00000000830)	ENSTMTG00000000900	ZFYVE27 (ENSTMTG00000000937)	MARVELD1 (ENSTMTG00000001012)	AVPI1 (ENSTMTG00000001017)	PI4K2A (ENSTMTG00000001025)	ENSTMTG00000001035	MMS19 (ENSTMTG00000001309)	ZDHHC16 (ENSTMTG00000002566)	ARHGAP19 (ENSTMTG00000002583)	ENSTMTG00000002590	LCOR (ENSTMTG00000002602)	PPRC1 (ENSTMTG00000002608) #21	LDB1 (ENSTMTG00000002621) #22	HPS6 (ENSTMTG00000002625)	ARMH3 (ENSTMTG00000002641) #24	OGA (ENSTMTG00000002679) #27	NPM3 (ENSTMTG00000002688) #28	FGF8 (ENSTMTG00000002693) #29	FBXW4 (ENSTMTG00000002700) #30	DPCD (ENSTMTG00000002704) #31	POLL (ENSTMTG00000002707) #32	ENSTMTG00000002734	BTRC (ENSTMTG00000002831) #33	LBX1 (ENSTMTG00000002859) #35	TLX1 (ENSTMTG00000002865) #37	KAZALD1 (ENSTMTG00000002879)	SFXN3 (ENSTMTG00000002927)	PDZD7 (ENSTMTG00000002937)
painted turtle	MODERN SPECIES	2388	HOGA1 (ENSCPBG00000011974)	ANKRD2 (ENSCPBG00000011964)	UBTD1 (ENSCPBG00000011961)	MMS19 (ENSCPBG00000011957)	ZDHHC16 (ENSCPBG00000011953)	EXOSC1 (ENSCPBG00000011949)	ENSCPBG00000011948	ENSCPBG00000011944	RRP12 (ENSCPBG00000011935)	ENSCPBG00000011932	ARHGAP19 (ENSCPBG00000011924)	SLIT1 (ENSCPBG00000005963)	LCOR (ENSCPBG00000005416)	ENSCPBG00000005413	PPRC1 (ENSCPBG00000005408) #21	LDB1 (ENSCPBG00000005401) #22	ENSCPBG00000005394	HPS6 (ENSCPBG00000005375)	ARMH3 (ENSCPBG00000003975) #24	KCNIP2 (ENSCPBG00000003838) #26	OGA (ENSCPBG00000003826) #27	NPM3 (ENSCPBG00000003817) #28	FGF8 (ENSCPBG00000003804) #29	FBXW4 (ENSCPBG00000003783) #30	DPCD (ENSCPBG00000003764) #31	POLL (ENSCPBG00000003750) #32	ENSCPBG00000003715	BTRC (ENSCPBG00000003583) #33	LBX1 (ENSCPBG00000003542) #35	TLX1 (ENSCPBG00000003532) #37	KAZALD1 (ENSCPBG00000003520)
Testudinidae	ANCESTRAL SPECIES	9	ENSGT00390000010434.b	ENSGT00730000111173	ENSGT00530000063604.A	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000164095	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a
Goode s thornscrub tortoise	MODERN SPECIES	21	HOGA1 (ENSGEVG00005003381)	ENSGEVG00005003440	ENSGEVG00005003466	ZDHHC16 (ENSGEVG00005003602)	ENSGEVG00005003635	ENSGEVG00005003669	ENSGEVG00005003730	ENSGEVG00005003749	UBTD1 (ENSGEVG00005003758)	ENSGEVG00005003767	ARHGAP19 (ENSGEVG00005003823)	SLIT1 (ENSGEVG00005003855)	LCOR (ENSGEVG00005003931)	ENSGEVG00005003952	ENSGEVG00005003965 #21	LDB1 (ENSGEVG00005003974) #22	HPS6 (ENSGEVG00005003987)	ARMH3 (ENSGEVG00005003998) #24	KCNIP2 (ENSGEVG00005004222) #26	OGA (ENSGEVG00005004411) #27	NPM3 (ENSGEVG00005004443) #28	FGF8 (ENSGEVG00005004467) #29	FBXW4 (ENSGEVG00005004522) #30	DPCD (ENSGEVG00005004549) #31	POLL (ENSGEVG00005004570) #32	ENSGEVG00005004603	BTRC (ENSGEVG00005004649) #33	ENSGEVG00005004693	LBX1 (ENSGEVG00005004717) #35	TLX1 (ENSGEVG00005004739) #37	ENSGEVG00005004760
Abingdon island giant tortoise	MODERN SPECIES	73												ENSCABG00000016657	LCOR (ENSCABG00000016654)	ENSCABG00000016649	PPRC1 (ENSCABG00000016646) #21	LDB1 (ENSCABG00000016577) #22	SLIT1 (ENSCABG00000016576)	ENSCABG00000016575
Archosauria	ANCESTRAL SPECIES	7	ENSGT00390000010434.b	ENSGT00730000111173	ENSGT00530000063604.A	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000164095	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B
Australian saltwater crocodile	MODERN SPECIES	68	GOLGA7B (ENSCPRG00005013674)	ZFYVE27 (ENSCPRG00005013662)	MARVELD1 (ENSCPRG00005013655)	PI4K2A (ENSCPRG00005013650)	MORN4 (ENSCPRG00005013645)	HOGA1 (ENSCPRG00005013640)	ANKRD2 (ENSCPRG00005013635)	EXOSC1 (ENSCPRG00005013566)	ZDHHC16 (ENSCPRG00005013550)	ENSCPRG00005013535	ENSCPRG00005013313	ARHGAP19 (ENSCPRG00005013266)	SLIT1 (ENSCPRG00005013244)	LCOR (ENSCPRG00005013234)	PPRC1 (ENSCPRG00005013227) #21	LDB1 (ENSCPRG00005013215) #22	HPS6 (ENSCPRG00005013211)	ARMH3 (ENSCPRG00005013194) #24	KCNIP2 (ENSCPRG00005013176) #26	OGA (ENSCPRG00005013170) #27	NPM3 (ENSCPRG00005013161) #28	FGF8 (ENSCPRG00005013159) #29	ENSCPRG00005013157 #30	ENSCPRG00005013155 #30	DPCD (ENSCPRG00005013153) #31	POLL (ENSCPRG00005013150) #32	ENSCPRG00005013130	BTRC (ENSCPRG00005013112) #33	ENSCPRG00005013103	LBX1 (ENSCPRG00005013102) #35	TLX1 (ENSCPRG00005013094) #37
Aves	ANCESTRAL SPECIES	6	ENSGT00390000010434.b	ENSGT00730000111173	ENSGT00530000063604.A	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000164095	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B
African ostrich	MODERN SPECIES	290		GOLGA7B (ENSSCUG00000001701)	ENSSCUG00000001705	ZFYVE27 (ENSSCUG00000001709)	MARVELD1 (ENSSCUG00000001711)	PI4K2A (ENSSCUG00000001713)	ENSSCUG00000001716	MMS19 (ENSSCUG00000001785)	ZDHHC16 (ENSSCUG00000001868)	EXOSC1 (ENSSCUG00000001873)	ENSSCUG00000001876	RRP12 (ENSSCUG00000001878)	ARHGAP19 (ENSSCUG00000001882)	LCOR (ENSSCUG00000001884)	ENSSCUG00000001887	LDB1 (ENSSCUG00000001889) #22	HPS6 (ENSSCUG00000001892)	ARMH3 (ENSSCUG00000001895) #24	KCNIP2 (ENSSCUG00000001896) #26	OGA (ENSSCUG00000001899) #27	NPM3 (ENSSCUG00000001900) #28	FGF8 (ENSSCUG00000001901) #29	FBXW4 (ENSSCUG00000001902) #30	DPCD (ENSSCUG00000001903) #31	POLL (ENSSCUG00000001904) #32	ENSSCUG00000001906	BTRC (ENSSCUG00000001914) #33	ENSSCUG00000001920	KAZALD1 (ENSSCUG00000001922)	SFXN3 (ENSSCUG00000001926)	ENSSCUG00000001933
Neognathae	ANCESTRAL SPECIES	7	ENSGT00390000010434.b	ENSGT00730000111173	ENSGT00530000063604.A	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000164095	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B
Galloanserae	ANCESTRAL SPECIES	6	ENSGT00390000010434.b	ENSGT00730000111173	ENSGT00530000063604.A	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000164095	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B
Phasianidae	ANCESTRAL SPECIES	6	ENSGT00390000010434.b	ENSGT00730000111173	ENSGT00530000063604.A	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000164095	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698.n #37	ENSGT00530000063555.B
Phasianidae_b	ANCESTRAL SPECIES	6	ENSGT00510000049872	ENSGT00390000010434.b	ENSGT00730000111173	ENSGT00530000063604.A	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000164095	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698.n #37	ENSGT00530000063555.B
Chicken	MODERN SPECIES	35	AVPI1 (ENSGALG00010020609)	PI4K2A (ENSGALG00010020616)	MORN4 (ENSGALG00010020626)	HOGA1 (ENSGALG00010020633)	ANKRD2 (ENSGALG00010020642)	UBTD1 (ENSGALG00010020667)	MMS19 (ENSGALG00010020673)	ZDHHC16 (ENSGALG00010020682)	EXOSC1 (ENSGALG00010020705)	PGAM1 (ENSGALG00010020714)	RRP12 (ENSGALG00010020730)	ARHGAP19 (ENSGALG00010020759)	SLIT1 (ENSGALG00010020778)	LCOR (ENSGALG00010020866)	PPRC1 (ENSGALG00010020889) #21	LDB1 (ENSGALG00010020921) #22	ENSGALG00010020941	HPS6 (ENSGALG00010020949)	C6H10orf76 (ENSGALG00010020970) #24	KCNIP2 (ENSGALG00010021012) #26	MGEA5 (ENSGALG00010021023) #27	NPM3 (ENSGALG00010021034) #28	FGF8 (ENSGALG00010021040) #29	FBXW4 (ENSGALG00010023185) #30	DPCD (ENSGALG00010019139) #31	POLL (ENSGALG00010019104) #32	ENSGALG00010017997	BTRC (ENSGALG00010018103) #33	LBX1 (ENSGALG00010019045) #35	TLX1 (ENSGALG00010018467) #37	KAZALD1 (ENSGALG00010017786)
Turkey	MODERN SPECIES	28	ZFYVE27 (ENSMGAG00000009699)	PI4K2A (ENSMGAG00000009723)	MORN4 (ENSMGAG00000009733)	HOGA1 (ENSMGAG00000009750)	ANKRD2 (ENSMGAG00000009758)	UBTD1 (ENSMGAG00000020222)	MMS19 (ENSMGAG00000009774)	ZDHHC16 (ENSMGAG00000009803)	EXOSC1 (ENSMGAG00000018256)	ENSMGAG00000009817	RRP12 (ENSMGAG00000009829)	ARHGAP19 (ENSMGAG00000009856)	SLIT1 (ENSMGAG00000009859)	LCOR (ENSMGAG00000009950)	PPRC1 (ENSMGAG00000010023) #21	LDB1 (ENSMGAG00000009961) #22	ENSMGAG00000002659	HPS6 (ENSMGAG00000002655)	ARMH3 (ENSMGAG00000009992) #24	KCNIP2 (ENSMGAG00000010045) #26	OGA (ENSMGAG00000010077) #27	NPM3 (ENSMGAG00000019749) #28	FGF8 (ENSMGAG00000015335) #29	FBXW4 (ENSMGAG00000010100) #30	DPCD (ENSMGAG00000010112) #31	POLL (ENSMGAG00000010132) #32	ENSMGAG00000010147	BTRC (ENSMGAG00000010164) #33	ENSMGAG00000018253 #37	KAZALD1 (ENSMGAG00000010203)	SFXN3 (ENSMGAG00000022982)
Japanese quail	MODERN SPECIES	24	ENSCJPG00005019547	PI4K2A (ENSCJPG00005019548)	MORN4 (ENSCJPG00005019551)	HOGA1 (ENSCJPG00005019552)	ANKRD2 (ENSCJPG00005019553)	UBTD1 (ENSCJPG00005019554)	ZDHHC16 (ENSCJPG00005019580)	EXOSC1 (ENSCJPG00005019603)	ENSCJPG00005019616	ARHGAP19 (ENSCJPG00005019619)	SLIT1 (ENSCJPG00005019620)	LCOR (ENSCJPG00005019736)	ENSCJPG00005019737	ENSCJPG00005019738	ENSCJPG00005019739 #21	LDB1 (ENSCJPG00005019740) #22	HPS6 (ENSCJPG00005019741)	ARMH3 (ENSCJPG00005019742) #24	KCNIP2 (ENSCJPG00005019751) #26	OGA (ENSCJPG00005019752) #27	NPM3 (ENSCJPG00005019854) #28	FGF8 (ENSCJPG00005019855) #29	FBXW4 (ENSCJPG00005019856) #30	DPCD (ENSCJPG00005019857) #31	ENSCJPG00005019858 #32	ENSCJPG00005019859 #32	ENSCJPG00005019860	BTRC (ENSCJPG00005019877) #33	ENSCJPG00005019967	LBX1 (ENSCJPG00005019968) #35	TLX1 (ENSCJPG00005019970) #37
Anatidae	ANCESTRAL SPECIES	4	ENSGT00510000049375	ENSGT00390000010434.b	ENSGT00530000063604.A	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000164095	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B
Duck	MODERN SPECIES	4259																LDB1 (ENSAPLG00000012702) #22
Pink-footed goose	MODERN SPECIES	11	MARVELD1 (ENSABRG00000008311)	PI4K2A (ENSABRG00000008151)	HOGA1 (ENSABRG00000008109)	ANKRD2 (ENSABRG00000008091)	UBTD1 (ENSABRG00000008082)	MMS19 (ENSABRG00000008035)	ZDHHC16 (ENSABRG00000008020)	EXOSC1 (ENSABRG00000008001)	ENSABRG00000007994	RRP12 (ENSABRG00000007978)	ARHGAP19 (ENSABRG00000007950)	ENSABRG00000007944	SLIT1 (ENSABRG00000007893)	LCOR (ENSABRG00000007875)	PPRC1 (ENSABRG00000007859) #21	LDB1 (ENSABRG00000007841) #22	ENSABRG00000007812	ARMH3 (ENSABRG00000007775) #24	KCNIP2 (ENSABRG00000007767) #26	OGA (ENSABRG00000007745) #27	NPM3 (ENSABRG00000007714) #28	FGF8 (ENSABRG00000007708) #29	FBXW4 (ENSABRG00000007699) #30	DPCD (ENSABRG00000007691) #31	POLL (ENSABRG00000007682) #32	ENSABRG00000007659	BTRC (ENSABRG00000007647) #33	TLX1 (ENSABRG00000007623) #37	ENSABRG00000007618	KAZALD1 (ENSABRG00000007609)	SFXN3 (ENSABRG00000007596)
Neognathae_b	ANCESTRAL SPECIES	8	ENSGT00390000010434.b	ENSGT00730000111173	ENSGT00530000063604.A	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000164095	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B
Passeriformes	ANCESTRAL SPECIES	10	ENSGT00390000010434.b	ENSGT00730000111173	ENSGT00530000063604.A	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000164095	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B
Great tit	MODERN SPECIES	26	ENSPMJG00000004065	PI4K2A (ENSPMJG00000004066)	MORN4 (ENSPMJG00000004071)	HOGA1 (ENSPMJG00000004076)	ANKRD2 (ENSPMJG00000004080)	UBTD1 (ENSPMJG00000004084)	MMS19 (ENSPMJG00000004087)	ZDHHC16 (ENSPMJG00000004117)	EXOSC1 (ENSPMJG00000004134)	ENSPMJG00000004385	RRP12 (ENSPMJG00000004387)	ARHGAP19 (ENSPMJG00000004396)	SLIT1 (ENSPMJG00000004400)	LCOR (ENSPMJG00000004409)	PPRC1 (ENSPMJG00000004431) #21	LDB1 (ENSPMJG00000004435) #22	ENSPMJG00000004456	HPS6 (ENSPMJG00000004470)	ARMH3 (ENSPMJG00000004471) #24	KCNIP2 (ENSPMJG00000004479) #26	ENSPMJG00000004497	OGA (ENSPMJG00000004530) #27	NPM3 (ENSPMJG00000004562) #28	FGF8 (ENSPMJG00000004565) #29	FBXW4 (ENSPMJG00000004570) #30	DPCD (ENSPMJG00000004583) #31	POLL (ENSPMJG00000004590) #32	ENSPMJG00000004603	BTRC (ENSPMJG00000004640) #33	LBX1 (ENSPMJG00000004661) #35	TLX1 (ENSPMJG00000004663) #37
Passeriformes_d	ANCESTRAL SPECIES	7	ENSGT00390000010434.b	ENSGT00730000111173	ENSGT00530000063604.A	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000164095	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B
Flycatcher	MODERN SPECIES	25	ZFYVE27 (ENSFALG00000008374)	ENSFALG00000025983	PI4K2A (ENSFALG00000028831)	MORN4 (ENSFALG00000008422)	HOGA1 (ENSFALG00000024169)	ANKRD2 (ENSFALG00000008427)	UBTD1 (ENSFALG00000008438)	MMS19 (ENSFALG00000008442)	ZDHHC16 (ENSFALG00000008446)	EXOSC1 (ENSFALG00000008450)	ENSFALG00000008454	RRP12 (ENSFALG00000008458)	ARHGAP19 (ENSFALG00000008462)	SLIT1 (ENSFALG00000008472)	LCOR (ENSFALG00000025098)	LDB1 (ENSFALG00000008498) #22	PPRC1 (ENSFALG00000008489) #21	ENSFALG00000008528	HPS6 (ENSFALG00000022918)	ARMH3 (ENSFALG00000008569) #24	KCNIP2 (ENSFALG00000008575) #26	OGA (ENSFALG00000008580) #27	NPM3 (ENSFALG00000008586) #28	FGF8 (ENSFALG00000024705) #29	FBXW4 (ENSFALG00000008613) #30	DPCD (ENSFALG00000008617) #31	POLL (ENSFALG00000008619) #32	ENSFALG00000008634	BTRC (ENSFALG00000008656) #33	TLX1 (ENSFALG00000008660) #37	KAZALD1 (ENSFALG00000008666)
Passeriformes_g	ANCESTRAL SPECIES	8	ENSGT00390000010434.b	ENSGT00730000111173	ENSGT00530000063604.A	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000164095	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B
Passeroidea	ANCESTRAL SPECIES	7	ENSGT00390000010434.b	ENSGT00730000111173	ENSGT00530000063604.A	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000164095	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B
Common canary	MODERN SPECIES	7	SFRP5 (ENSSCAG00000016665)	ZFYVE27 (ENSSCAG00000016659)	MORN4 (ENSSCAG00000016656)	HOGA1 (ENSSCAG00000016653)	ANKRD2 (ENSSCAG00000016650)	UBTD1 (ENSSCAG00000016648)	ZDHHC16 (ENSSCAG00000016614)	EXOSC1 (ENSSCAG00000016610)	ENSSCAG00000016605	RRP12 (ENSSCAG00000016597)	ARHGAP19 (ENSSCAG00000016588)	SLIT1 (ENSSCAG00000016584)	ENSSCAG00000016580	ENSSCAG00000016579	ENSSCAG00000016575 #21	LDB1 (ENSSCAG00000016573) #22	HPS6 (ENSSCAG00000016571)	ARMH3 (ENSSCAG00000016565) #24	KCNIP2 (ENSSCAG00000016561) #26	OGA (ENSSCAG00000016559) #27	NPM3 (ENSSCAG00000016557) #28	FGF8 (ENSSCAG00000016555) #29	FBXW4 (ENSSCAG00000016551) #30	DPCD (ENSSCAG00000016547) #31	POLL (ENSSCAG00000016546) #32	ENSSCAG00000016545	BTRC (ENSSCAG00000016542) #33	TLX1 (ENSSCAG00000016539) #37	KAZALD1 (ENSSCAG00000016538)	SFXN3 (ENSSCAG00000016535)	ENSSCAG00000016532
Zebra finch	MODERN SPECIES	28	AVPI1 (ENSTGUG00000025747)	PI4K2A (ENSTGUG00000009606)	MORN4 (ENSTGUG00000009616)	HOGA1 (ENSTGUG00000009624)	ANKRD2 (ENSTGUG00000022547)	UBTD1 (ENSTGUG00000009637)	MMS19 (ENSTGUG00000009642)	ZDHHC16 (ENSTGUG00000009668)	EXOSC1 (ENSTGUG00000009692)	ENSTGUG00000021202	RRP12 (ENSTGUG00000009711)	ARHGAP19 (ENSTGUG00000009730)	SLIT1 (ENSTGUG00000009734)	LCOR (ENSTGUG00000009834)	PPRC1 (ENSTGUG00000009839) #21	LDB1 (ENSTGUG00000009855) #22	ENSTGUG00000009862	HPS6 (ENSTGUG00000009875)	ARMH3 (ENSTGUG00000009880) #24	KCNIP2 (ENSTGUG00000009911) #26	OGA (ENSTGUG00000009938) #27	NPM3 (ENSTGUG00000009948) #28	FGF8 (ENSTGUG00000009956) #29	FBXW4 (ENSTGUG00000009903) #30	DPCD (ENSTGUG00000009967) #31	POLL (ENSTGUG00000009972) #32	ENSTGUG00000009983	BTRC (ENSTGUG00000010007) #33	LBX1 (ENSTGUG00000010027) #35	TLX1 (ENSTGUG00000010029) #37	ENSTGUG00000027136
Medium ground finch	MODERN SPECIES	3	PI4K2A (ENSGFOG00000007984)	MORN4 (ENSGFOG00000007960)	HOGA1 (ENSGFOG00000007950)	ANKRD2 (ENSGFOG00000007941)	UBTD1 (ENSGFOG00000007936)	MMS19 (ENSGFOG00000007914)	ZDHHC16 (ENSGFOG00000007902)	EXOSC1 (ENSGFOG00000007885)	ENSGFOG00000007868	RRP12 (ENSGFOG00000007841)	ARHGAP19 (ENSGFOG00000007827)	SLIT1 (ENSGFOG00000004119)	LCOR (ENSGFOG00000004029)	ENSGFOG00000004024	ENSGFOG00000004011 #21	LDB1 (ENSGFOG00000003999) #22	ARMH3 (ENSGFOG00000003948) #24	KCNIP2 (ENSGFOG00000003914) #26	OGA (ENSGFOG00000003883) #27	NPM3 (ENSGFOG00000003871) #28	FGF8 (ENSGFOG00000003860) #29	FBXW4 (ENSGFOG00000003718) #30	DPCD (ENSGFOG00000003687) #31	POLL (ENSGFOG00000003670) #32	ENSGFOG00000003629	ENSGFOG00000003604	ENSGFOG00000003597	BTRC (ENSGFOG00000003584) #33	KAZALD1 (ENSGFOG00000003573)	SFXN3 (ENSGFOG00000003555)	ENSGFOG00000003538
Neognathae_c	ANCESTRAL SPECIES	8	ENSGT00390000010434.b	ENSGT00730000111173	ENSGT00530000063604.A	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798.d #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000164095	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a
Golden eagle	MODERN SPECIES	2	PI4K2A (ENSACCG00020000698)	MORN4 (ENSACCG00020000670)	HOGA1 (ENSACCG00020000638)	ANKRD2 (ENSACCG00020000618)	UBTD1 (ENSACCG00020000581)	MMS19 (ENSACCG00020000544)	ZDHHC16 (ENSACCG00020000500)	EXOSC1 (ENSACCG00020000443)	ENSACCG00020010002	RRP12 (ENSACCG00020009977)	ARHGAP19 (ENSACCG00020009952)	SLIT1 (ENSACCG00020009931)	LCOR (ENSACCG00020009912)	ENSACCG00020009903	PPRC1 (ENSACCG00020009873) #21	LDB1 (ENSACCG00020009835) #22	HPS6 (ENSACCG00020009815)	ARMH3 (ENSACCG00020009789) #24	KCNIP2 (ENSACCG00020009741) #26	OGA (ENSACCG00020009722) #27	NPM3 (ENSACCG00020009702) #28	FGF8 (ENSACCG00020009686) #29	FBXW4 (ENSACCG00020009662) #30	DPCD (ENSACCG00020009630) #31	POLL (ENSACCG00020009601) #32	ENSACCG00020009569	BTRC (ENSACCG00020009499) #33	LBX1 (ENSACCG00020009419) #35	TLX1 (ENSACCG00020009411) #37	KAZALD1 (ENSACCG00020009402)	SFXN3 (ENSACCG00020009385)
Kakapo	MODERN SPECIES	22	MARVELD1 (ENSSHBG00005020893)	AVPI1 (ENSSHBG00005020896)	PI4K2A (ENSSHBG00005020904)	HOGA1 (ENSSHBG00005020914)	ANKRD2 (ENSSHBG00005020924)	UBTD1 (ENSSHBG00005020933)	MMS19 (ENSSHBG00005020943)	ZDHHC16 (ENSSHBG00005020956)	EXOSC1 (ENSSHBG00005020963)	ENSSHBG00005020970	RRP12 (ENSSHBG00005020977)	ARHGAP19 (ENSSHBG00005020983)	SLIT1 (ENSSHBG00005021002)	LCOR (ENSSHBG00005001762)	PPRC1 (ENSSHBG00005001811) #21	LDB1 (ENSSHBG00005001841) #22	HPS6 (ENSSHBG00005001864)	ARMH3 (ENSSHBG00005001905) #24	ENSSHBG00005001961 #26	OGA (ENSSHBG00005001995) #27	NPM3 (ENSSHBG00005002019) #28	FGF8 (ENSSHBG00005002055) #29	FBXW4 (ENSSHBG00005002093) #30	DPCD (ENSSHBG00005002126) #31	POLL (ENSSHBG00005002157) #32	ENSSHBG00005002316	BTRC (ENSSHBG00005002701) #33	LBX1 (ENSSHBG00005002802) #35	TLX1 (ENSSHBG00005002828) #37	KAZALD1 (ENSSHBG00005002844)	SFXN3 (ENSSHBG00005002866)
Lepidosauria	ANCESTRAL SPECIES	8	ENSGT00730000111173	ENSGT00530000063604.A	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00940000162611.b	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000164095	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B
tuatara	MODERN SPECIES	1056	MORN4 (ENSSPUG00000012878)	HOGA1 (ENSSPUG00000012791)	ANKRD2 (ENSSPUG00000012723)	UBTD1 (ENSSPUG00000012702)	MMS19 (ENSSPUG00000012382)	ZDHHC16 (ENSSPUG00000012276)	EXOSC1 (ENSSPUG00000012263)	ENSSPUG00000012251	RRP12 (ENSSPUG00000012221)	ARHGAP19 (ENSSPUG00000012197)	SLIT1 (ENSSPUG00000012148)	ENSSPUG00000012129	ENSSPUG00000012101	ENSSPUG00000012079 #21	ENSSPUG00000012068 #21	LDB1 (ENSSPUG00000012060) #22	ENSSPUG00000012022	ARMH3 (ENSSPUG00000011969) #24	KCNIP2 (ENSSPUG00000011942) #26	OGA (ENSSPUG00000011899) #27	NPM3 (ENSSPUG00000011875) #28	FGF8 (ENSSPUG00000011861) #29	FBXW4 (ENSSPUG00000011804) #30	DPCD (ENSSPUG00000011780) #31	POLL (ENSSPUG00000011763) #32	ENSSPUG00000011646	BTRC (ENSSPUG00000011559) #33	LBX1 (ENSSPUG00000011521) #35	TLX1 (ENSSPUG00000011511) #37	KAZALD1 (ENSSPUG00000011500)	SFXN3 (ENSSPUG00000011489)
Episquamata	ANCESTRAL SPECIES	2	ENSGT00730000111173	ENSGT00530000063604.A	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00940000162611.b	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000164095	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B
Laterata	ANCESTRAL SPECIES		ENSGT00730000111173	ENSGT00530000063604.A	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00940000162611.b	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000164095	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B
Common wall lizard	MODERN SPECIES	13	MORN4 (ENSPMRG00000002981)	HOGA1 (ENSPMRG00000002970)	ANKRD2 (ENSPMRG00000002965)	UBTD1 (ENSPMRG00000002956)	MMS19 (ENSPMRG00000002937)	ZDHHC16 (ENSPMRG00000002918)	EXOSC1 (ENSPMRG00000002866)	ENSPMRG00000002824	RRP12 (ENSPMRG00000002801)	ARHGAP19 (ENSPMRG00000002746)	SLIT1 (ENSPMRG00000001494)	LCOR (ENSPMRG00000001039)	ENSPMRG00000001008	ENSPMRG00000000986	PPRC1 (ENSPMRG00000000943) #21	LDB1 (ENSPMRG00000000892) #22	HPS6 (ENSPMRG00000000861)	ARMH3 (ENSPMRG00000000804) #24	KCNIP2 (ENSPMRG00000000777) #26	OGA (ENSPMRG00000000747) #27	NPM3 (ENSPMRG00000000732) #28	FGF8 (ENSPMRG00000000710) #29	ENSPMRG00000000700	FBXW4 (ENSPMRG00000000682) #30	DPCD (ENSPMRG00000000665) #31	POLL (ENSPMRG00000000637) #32	ENSPMRG00000000604	BTRC (ENSPMRG00000000447) #33	LBX1 (ENSPMRG00000000334) #35	TLX1 (ENSPMRG00000000309) #37	KAZALD1 (ENSPMRG00000000257)
Argentine black and white tegu	MODERN SPECIES	19	PI4K2A (ENSSMRG00000021688)	MORN4 (ENSSMRG00000021687)	HOGA1 (ENSSMRG00000021686)	ANKRD2 (ENSSMRG00000021685)	UBTD1 (ENSSMRG00000021684)	MMS19 (ENSSMRG00000021683)	ZDHHC16 (ENSSMRG00000021682)	EXOSC1 (ENSSMRG00000021681)	ENSSMRG00000021680	RRP12 (ENSSMRG00000021679)	ARHGAP19 (ENSSMRG00000021678)	SLIT1 (ENSSMRG00000021677)	LCOR (ENSSMRG00000021676)	ENSSMRG00000021675	PPRC1 (ENSSMRG00000021674) #21	LDB1 (ENSSMRG00000021673) #22	ENSSMRG00000021672	HPS6 (ENSSMRG00000021671)	ARMH3 (ENSSMRG00000021670) #24	KCNIP2 (ENSSMRG00000021669) #26	OGA (ENSSMRG00000021668) #27	NPM3 (ENSSMRG00000021667) #28	FGF8 (ENSSMRG00000021666) #29	FBXW4 (ENSSMRG00000021665) #30	DPCD (ENSSMRG00000021664) #31	POLL (ENSSMRG00000021663) #32
Toxicofera	ANCESTRAL SPECIES	2	ENSGT00730000111173	ENSGT00530000063604.A	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00940000162611.b	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000164095	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B
Lizard	MODERN SPECIES	853												ENSACAG00000043329	ENSACAG00000012444	ENSACAG00000021055	PPRC1 (ENSACAG00000012404) #21	LDB1 (ENSACAG00000012317) #22	ENSACAG00000023496	HPS6 (ENSACAG00000012311)	ARMH3 (ENSACAG00000012211) #24	KCNIP2 (ENSACAG00000012032) #26	OGA (ENSACAG00000011944) #27	NPM3 (ENSACAG00000011936) #28	FGF8 (ENSACAG00000011928) #29	FBXW4 (ENSACAG00000011888) #30	DPCD (ENSACAG00000029359) #31	POLL (ENSACAG00000011850) #32	ENSACAG00000011539	BTRC (ENSACAG00000011203) #33	LBX1 (ENSACAG00000022501) #35	TLX1 (ENSACAG00000011182) #37	KAZALD1 (ENSACAG00000011169)
Elapidae	ANCESTRAL SPECIES	4	ENSGT00730000111173	ENSGT00530000063604.A	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00940000162611.b	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000164095	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B
Indian cobra	MODERN SPECIES	3	ENSNNAG00000003189	PI4K2A (ENSNNAG00000003173)	MORN4 (ENSNNAG00000003159)	HOGA1 (ENSNNAG00000003149)	ANKRD2 (ENSNNAG00000003134)	UBTD1 (ENSNNAG00000003131)	MMS19 (ENSNNAG00000003085)	ZDHHC16 (ENSNNAG00000003057)	EXOSC1 (ENSNNAG00000003048)	ENSNNAG00000003029	RRP12 (ENSNNAG00000016135)	ARHGAP19 (ENSNNAG00000016110)	SLIT1 (ENSNNAG00000016033)	LCOR (ENSNNAG00000016005)	PPRC1 (ENSNNAG00000015952) #21	LDB1 (ENSNNAG00000015901) #22	ENSNNAG00000015868	HPS6 (ENSNNAG00000015864)	ARMH3 (ENSNNAG00000015743) #24	KCNIP2 (ENSNNAG00000015571) #26	OGA (ENSNNAG00000015525) #27	NPM3 (ENSNNAG00000015516) #28	FGF8 (ENSNNAG00000015504) #29	FBXW4 (ENSNNAG00000015475) #30	DPCD (ENSNNAG00000015439) #31	POLL (ENSNNAG00000015413) #32	ENSNNAG00000015358	BTRC (ENSNNAG00000015268) #33	LBX1 (ENSNNAG00000015245) #35	TLX1 (ENSNNAG00000015238) #37	KAZALD1 (ENSNNAG00000015218)
Elapidae_a	ANCESTRAL SPECIES		ENSGT00730000111173	ENSGT00530000063604.A	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00940000162611.b	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000164095	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a
Acanthophiinae	ANCESTRAL SPECIES	1	ENSGT00730000111173	ENSGT00530000063604.A	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00940000162611.b	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000164095	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B	ENSGT01030000234641.b.a.b.a.a
Eastern brown snake	MODERN SPECIES	16	AVPI1 (ENSPTXG00000018464)	PI4K2A (ENSPTXG00000018462)	MORN4 (ENSPTXG00000018460)	HOGA1 (ENSPTXG00000018458)	ANKRD2 (ENSPTXG00000018448)	UBTD1 (ENSPTXG00000018447)	ZDHHC16 (ENSPTXG00000018446)	EXOSC1 (ENSPTXG00000018445)	ENSPTXG00000018444	RRP12 (ENSPTXG00000018443)	ENSPTXG00000018441	SLIT1 (ENSPTXG00000018436)	LCOR (ENSPTXG00000018435)	ENSPTXG00000018434	PPRC1 (ENSPTXG00000018433) #21	LDB1 (ENSPTXG00000018432) #22	HPS6 (ENSPTXG00000018431)	ARMH3 (ENSPTXG00000018430) #24	KCNIP2 (ENSPTXG00000018423) #26	OGA (ENSPTXG00000018422) #27	NPM3 (ENSPTXG00000018421) #28	FGF8 (ENSPTXG00000018420) #29	FBXW4 (ENSPTXG00000018418) #30	DPCD (ENSPTXG00000018417) #31	POLL (ENSPTXG00000018416) #32	ENSPTXG00000018397	BTRC (ENSPTXG00000018395) #33	LBX1 (ENSPTXG00000018393) #35	TLX1 (ENSPTXG00000018391) #37
Mainland tiger snake	MODERN SPECIES		MORN4 (ENSNSUG00000007384)	HOGA1 (ENSNSUG00000007381)	ANKRD2 (ENSNSUG00000007333)	UBTD1 (ENSNSUG00000007330)	MMS19 (ENSNSUG00000007231)	ZDHHC16 (ENSNSUG00000007225)	EXOSC1 (ENSNSUG00000007224)	ENSNSUG00000007223	RRP12 (ENSNSUG00000007058)	ARHGAP19 (ENSNSUG00000007052)	SLIT1 (ENSNSUG00000007046)	LCOR (ENSNSUG00000007045)	ENSNSUG00000007044	ENSNSUG00000007043	ENSNSUG00000007041 #21	LDB1 (ENSNSUG00000007029) #22	HPS6 (ENSNSUG00000007027)	ENSNSUG00000007026 #24	ENSNSUG00000007025	ENSNSUG00000007024 #24	ENSNSUG00000006959	KCNIP2 (ENSNSUG00000006925) #26	OGA (ENSNSUG00000006678) #27	NPM3 (ENSNSUG00000006677) #28	FGF8 (ENSNSUG00000006675) #29	FBXW4 (ENSNSUG00000006672) #30	DPCD (ENSNSUG00000006670) #31	ENSNSUG00000006669 #32	ENSNSUG00000006668 #32	ENSNSUG00000006614	BTRC (ENSNSUG00000006609) #33
Blue-lipped sea krait	MODERN SPECIES	8858																LDB1 (ENSLLTG00000004279) #22
Anura	ANCESTRAL SPECIES	25	ENSGT00530000063604.A	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00940000161460	ENSGT00390000013106	ENSGT01100000263518.A.b	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798 #26	ENSGT00390000007726.a.a #27	ENSGT00940000158796 #28	ENSGT00940000159518 #29	ENSGT00390000005029 #30	ENSGT00390000014031 #31	ENSGT00940000158515 #32	ENSGT00940000164095	ENSGT00940000159672 #33	ENSGT00940000161756 #35	ENSGT00940000158698 #37	ENSGT00530000063555.B
Leishan spiny toad	MODERN SPECIES	9	SCNN1A (ENSLLEG00000011175)	ENSLLEG00000011089	ENSLLEG00000010948	ENSLLEG00000010118	ENSLLEG00000010017	ENSLLEG00000009979	ENSLLEG00000009929	ARHGAP19 (ENSLLEG00000009651)	SLIT1 (ENSLLEG00000009277)	ENSLLEG00000009221	ENSLLEG00000009195	ENSLLEG00000009112	PPRC1 (ENSLLEG00000008978) #21	ENSLLEG00000008950	ENSLLEG00000008924	LDB1 (ENSLLEG00000008345) #22	ENSLLEG00000007323	HPS6 (ENSLLEG00000007212)	ENSLLEG00000006720 #24	ENSLLEG00000006641	ENSLLEG00000006620	KCNIP2 (ENSLLEG00000006545) #26	OGA (ENSLLEG00000005763) #27	NPM3 (ENSLLEG00000030101) #28	ENSLLEG00000030089	FGF8 (ENSLLEG00000030080) #29	ENSLLEG00000030073	FBXW4 (ENSLLEG00000030048) #30	DPCD (ENSLLEG00000030025) #31	POLL (ENSLLEG00000030007) #32	ENSLLEG00000029961
Frog	MODERN SPECIES	7	ankrd2 (ENSXETG00000003442)	ubtd1 (ENSXETG00000039558)	mms19 (ENSXETG00000003439)	zdhhc16 (ENSXETG00000003436)	exosc1 (ENSXETG00000003434)	pgam1 (ENSXETG00000003433)	ENSXETG00000043993	ENSXETG00000043423	XB5832479 [provisional:cdc25c] (ENSXETG00000035778)	rrp12 (ENSXETG00000003430)	nlk.2 (ENSXETG00000003418)	arhgap19 (ENSXETG00000003417)	slit1 (ENSXETG00000003405)	lcor (ENSXETG00000046643)	pprc1 (ENSXETG00000037399) #21	ldb1 (ENSXETG00000001714) #22	ENSXETG00000006272	hps6 (ENSXETG00000006271)	armh3 (ENSXETG00000006269) #24	ENSXETG00000048284	ENSXETG00000046014	kcnip2 (ENSXETG00000014462) #26	oga (ENSXETG00000014468) #27	ENSXETG00000048408	npm3 (ENSXETG00000014472) #28	ENSXETG00000042829	ENSXETG00000040225	fgf8 (ENSXETG00000014474) #29	ENSXETG00000044919	fbxw4 (ENSXETG00000021190) #30	dpcd (ENSXETG00000010773) #31
Coelacanth	MODERN SPECIES	2417															ENSLACG00000001407 #21	LDB1 (ENSLACG00000006410) #22
Actinopterygii	ANCESTRAL SPECIES	47	ENSGT00950000183002.C	ENSGT00940000154078.a.a	ENSGT00390000004495	ENSGT00390000015375	ENSGT00940000157186	ENSGT00530000064017.a	ENSGT00940000160317	ENSGT00940000155782 #11	ENSGT00390000009747 #9	ENSGT00940000157919 #8	ENSGT00940000155737.b #7	ENSGT01030000234641.b.a.a	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331	ENSGT00940000157322.b.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00940000162611.b	ENSGT00940000175336	ENSGT00730000111173
Reedfish	MODERN SPECIES	10	lzts2a (ENSECRG00000002943)	mrpl43 (ENSECRG00000002927)	twnk (ENSECRG00000002924)	ENSECRG00000002914	SEMA4G (ENSECRG00000002903)	SLF2 (ENSECRG00000002883)	mfsd13a (ENSECRG00000002870)	actr1b (ENSECRG00000002860) #11	sufu (ENSECRG00000002841) #9	trim8a (ENSECRG00000002832) #8	arl3b (ENSECRG00000002816) #7	sfxn2 (ENSECRG00000002800)	npm3 (ENSECRG00000002793) #28	oga (ENSECRG00000002767) #27	ENSECRG00000002734 #21	ldb1a (ENSECRG00000002707) #22	HPS6 (ENSECRG00000002693)	ENSECRG00000002684	armh3 (ENSECRG00000002599) #24	KCNIP2 (ENSECRG00000002246) #26	cox15 (ENSECRG00000002187)	cutc (ENSECRG00000002156)	ENSECRG00000002141	ENSECRG00000002106	ENSECRG00000002079	ARHGAP19 (ENSECRG00000002058)	slit1a (ENSECRG00000002016)	ENSECRG00000001996	ENSECRG00000001987	ENSECRG00000001980	morn4 (ENSECRG00000001966)
Neopterygii	ANCESTRAL SPECIES	18	ENSGT00950000183002.B.b	ENSGT00940000154078.a.a.a	ENSGT00390000004495	ENSGT00390000015375	ENSGT00940000157186	ENSGT00530000064017.a	ENSGT00940000160317	ENSGT00940000155782 #11	ENSGT00390000009747 #9	ENSGT00940000157919 #8	ENSGT00940000155737.b #7	ENSGT01030000234641.b.a.a	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331	ENSGT00940000157322.b.a	ENSGT00940000170319	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00940000162611.b	ENSGT00940000175336
Spotted gar	MODERN SPECIES	671	sfxn3 (ENSLOCG00000012590)	pdzd7a (ENSLOCG00000012602)	LZTS2 (ENSLOCG00000012615)	twnk (ENSLOCG00000012623)	mrpl43 (ENSLOCG00000012629)	SEMA4G (ENSLOCG00000012636)	ENSLOCG00000012649	ENSLOCG00000018257	mfsd13a (ENSLOCG00000012657)	ACTR1A (ENSLOCG00000012666) #11	sufu (ENSLOCG00000012672) #9	trim8a (ENSLOCG00000012685) #8	ARL3 (ENSLOCG00000012693) #7	oga (ENSLOCG00000012705) #27	ENSLOCG00000012714 #21	ldb1a (ENSLOCG00000012717) #22	ENSLOCG00000012727	HPS6 (ENSLOCG00000012743)	armh3 (ENSLOCG00000012746) #24	KCNIP2 (ENSLOCG00000012753) #26	cox15 (ENSLOCG00000012765)	cutc (ENSLOCG00000012769)	ENSLOCG00000012775	ENSLOCG00000012799	ARHGAP19 (ENSLOCG00000012802)	slit1a (ENSLOCG00000012809)	ENSLOCG00000018258	ENSLOCG00000012823	morn4 (ENSLOCG00000012827)	hoga1 (ENSLOCG00000012833)	ANKRD2 (ENSLOCG00000012838)
Osteoglossocephalai	ANCESTRAL SPECIES	108	ENSGT00950000183002.C.c.b	ENSGT00940000154078.a.a.a	ENSGT00390000004495	ENSGT00390000015375	ENSGT00940000157186.c	ENSGT00940000160317	ENSGT00530000064017.a	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000157919.b #8	ENSGT00940000155737.b #7	ENSGT01030000234641.b.a.a	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a #21	ENSGT00390000005639.a.b #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000170319	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00940000162611.b	ENSGT00940000175336
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES																	ENSGT00390000005639.a.b.a #22
P. kingsleyae	MODERN SPECIES	194	pde10a (ENSPKIG00000006763)	TBXT (ENSPKIG00000006895)	PRR18 (ENSPKIG00000006923)	sft2d1 (ENSPKIG00000006967)	ENSPKIG00000007063	MERTK (ENSPKIG00000007083)	TMEM87B (ENSPKIG00000007164)	ENSPKIG00000007296	ZC3H6 (ENSPKIG00000007353)	ENSPKIG00000007406	ttl (ENSPKIG00000007468)	polr1b (ENSPKIG00000007536)	nanp (ENSPKIG00000007595)	npm3 (ENSPKIG00000007609) #28	oga (ENSPKIG00000007634) #27	ENSPKIG00000007675 #22	ENSPKIG00000007738	ENSPKIG00000007848	KCNIP2 (ENSPKIG00000007860) #26	cox15 (ENSPKIG00000007901)	cutc (ENSPKIG00000007956)	ENSPKIG00000008056	ENSPKIG00000008212	ENSPKIG00000008231	ENSPKIG00000008260	ENSPKIG00000008291	st3gal7 (ENSPKIG00000008318)	hps1 (ENSPKIG00000008360)	HPSE2 (ENSPKIG00000008417)	ENSPKIG00000008449	nkx3.3 (ENSPKIG00000008463)
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	181	ENSGT00520000061927	ENSGT00390000015076	ENSGT00980000198917	ENSGT00940000167489	ENSGT00390000003070.a.a.p	ENSGT00940000160638	ENSGT00390000017548.b.b	ENSGT00950000182990.b	ENSGT00940000161116.w.a.a	ENSGT00390000004428.a.a	ENSGT00390000003595	ENSGT01090000260051.a	ENSGT01080000257365.a.c	ENSGT01030000234586.B.a.a.a	ENSGT00940000157836.b	ENSGT00390000005639.a.b.b.a #22	ENSGT00390000001546.f	ENSGT00390000002554.`b #24	ENSGT00940000157798.b.j #26	ENSGT00940000157331.b.a	ENSGT00940000157322.b.a.a
P. kingsleyae	MODERN SPECIES	18	HID1 (ENSPKIG00000013909)	ENSPKIG00000014005	NEU3 (ENSPKIG00000014067)	ENSPKIG00000014094	NEU3 (ENSPKIG00000014131)	USH1G (ENSPKIG00000014218)	FADS6 (ENSPKIG00000014246)	ENSPKIG00000014273	zgc:112148 (ENSPKIG00000014299)	ENSPKIG00000014313	exoc7 (ENSPKIG00000014329)	galr2a (ENSPKIG00000014369)	KCNJ16 (ENSPKIG00000014415)	kcnj2a (ENSPKIG00000014425)	map2k6 (ENSPKIG00000014459)	ldb1a (ENSPKIG00000014537) #22	HPS6 (ENSPKIG00000014625)	armh3 (ENSPKIG00000014676) #24	KCNIP2 (ENSPKIG00000014808) #26	ENSPKIG00000014871	ARHGAP19 (ENSPKIG00000014888)	slit1a (ENSPKIG00000014953)	ENSPKIG00000015096	ENSPKIG00000015112	hoga1 (ENSPKIG00000015141)	CNNM1 (ENSPKIG00000015185)	got1 (ENSPKIG00000015231)	ENSPKIG00000015279	ENTPD7 (ENSPKIG00000015335)	ENSPKIG00000015431	atpv0e2 (ENSPKIG00000015481)
Asian bonytongue	MODERN SPECIES	18	si:dkey-21c1.1 (ENSSFOG00015027217)	ENSSFOG00015004322	HID1 (ENSSFOG00015004335)	ENSSFOG00015004420	ENSSFOG00015004429	ENSSFOG00015024651	USH1G (ENSSFOG00015004437)	FADS6 (ENSSFOG00015004458)	ENSSFOG00015004483	zgc:112148 (ENSSFOG00015004496)	exoc7 (ENSSFOG00015004564)	galr2a (ENSSFOG00015004780)	KCNJ16 (ENSSFOG00015004794)	kcnj2a (ENSSFOG00015004808)	map2k6 (ENSSFOG00015026739)	LDB1 (ENSSFOG00015026347) #22	HPS6 (ENSSFOG00015004868)	armh3 (ENSSFOG00015004890) #24	KCNIP2 (ENSSFOG00015005014) #26	ARHGAP19 (ENSSFOG00015005054)	SLIT1 (ENSSFOG00015005079)	ENSSFOG00015005187	ENSSFOG00015030867	ENSSFOG00015027052	hoga1 (ENSSFOG00015005206)	CNNM1 (ENSSFOG00015005249)	APOBEC2 (ENSSFOG00015022920)	guca1d (ENSSFOG00015005454)	UPK1B (ENSSFOG00015005472)	eif4e1b (ENSSFOG00015005488)	nars2 (ENSSFOG00015005504)
Osteoglossiformes	ANCESTRAL SPECIES	177														ENSGT00940000158796 #28	ENSGT00390000007726.a.a.i #27	ENSGT00390000005639.a.b.b.b #22	ENSGT00530000063586.a	ENSGT00390000001546.e	ENSGT00390000002554.ab #24	ENSGT00940000157798.b.i.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157322.b.a.b	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00940000162611.b	ENSGT00530000063604.A	ENSGT00940000157525.a	ENSGT00950000183082.b.b.a.a
Asian bonytongue	MODERN SPECIES	23	rrh (ENSSFOG00015013169)	ENSSFOG00015013193	gar1 (ENSSFOG00015013198)	lamtor3 (ENSSFOG00015030304)	dapp1 (ENSSFOG00015013233)	atp10d (ENSSFOG00015013278)	commd8 (ENSSFOG00015013369)	ENSSFOG00015032686	selenou1a (ENSSFOG00015013404)	ENSSFOG00015013415	ENSSFOG00015013450	ENSSFOG00015013504	trim8a (ENSSFOG00015013630) #8	npm3 (ENSSFOG00015013651) #28	oga (ENSSFOG00015013836) #27	LDB1 (ENSSFOG00015029958) #22	ENSSFOG00015015273	HPS6 (ENSSFOG00015026018)	ARMH3 (ENSSFOG00015015360) #24	ENSSFOG00015032288	KCNIP2 (ENSSFOG00015015460) #26	cox15 (ENSSFOG00015015485)	cutc (ENSSFOG00015025714)	ENSSFOG00015015558	ENSSFOG00015015619	slit1a (ENSSFOG00015015642)	ENSSFOG00015015746	ENSSFOG00015031827	ENSSFOG00015029523	ENSSFOG00015015789	hps1 (ENSSFOG00015015808)
Clupeocephala	DUPLICATION
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00390000005639.a.b.c #22
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00390000005639.a.b.c #22
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT00390000005639.a.b.c #22
Salmoninae	ANCESTRAL SPECIES																	ENSGT00390000005639.a.b.c #22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00390000005639.a.b.c #22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00390000005639.a.b.c #22
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	4	ENSOMYG00000053044	ENSOMYG00000059233	ENSOMYG00000004552	ENSOMYG00000004632	ENSOMYG00000068777	ENSOMYG00000071673	akap8l (ENSOMYG00000052483)	ENSOMYG00000051164	ENSOMYG00000061151	ENSOMYG00000048846	ENSOMYG00000051942	ENSOMYG00000048312	ENSOMYG00000059563	ENSOMYG00000003277	ENSOMYG00000061661	ENSOMYG00000023197 #22	ENSOMYG00000061283	armh3 (ENSOMYG00000055829) #24	ENSOMYG00000075129 #26	ENSOMYG00000058057	ENSOMYG00000064079	ENSOMYG00000058375	ENSOMYG00000072319	ENSOMYG00000032612	ENSOMYG00000050183	ENSOMYG00000064780	ENSOMYG00000061918	ENSOMYG00000049087	ENSOMYG00000076614	slit1b (ENSOMYG00000006609)	ENSOMYG00000006387
Rainbow trout	MODERN SPECIES	8	ENSOMYG00000057056	ENSOMYG00000066413	ENSOMYG00000052089	ENSOMYG00000007321	ENSOMYG00000051828	ENSOMYG00000068486	TMC6 (ENSOMYG00000075433)	TMC8 (ENSOMYG00000068756)	ENSOMYG00000067672	syngr2b (ENSOMYG00000032716)	tk1 (ENSOMYG00000048545)	afmid (ENSOMYG00000032736)	cant1b (ENSOMYG00000051240)	ENSOMYG00000065935 ##27	ENSOMYG00000069738 #21	ENSOMYG00000049820 #22	ENSOMYG00000059644	ENSOMYG00000073032	ENSOMYG00000007016	ENSOMYG00000059257	ENSOMYG00000070917	ENSOMYG00000049822	ENSOMYG00000056856	ENSOMYG00000051297	ENSOMYG00000076634	ENSOMYG00000061575	gprc5bb (ENSOMYG00000055411)	exosc1 (ENSOMYG00000075326)	pgam1b (ENSOMYG00000075613)	cdc25d (ENSOMYG00000066296)	pi4k2a (ENSOMYG00000005311)
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00390000005639.a.b.c #22
Euacanthomorphacea	ANCESTRAL SPECIES																	ENSGT00390000005639.a.b.c #22
Percomorphaceae	ANCESTRAL SPECIES																	ENSGT00390000005639.a.b.c #22
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00390000005639.a.b.c #22
Percomorphaceae_C	ANCESTRAL SPECIES																	ENSGT00390000005639.a.b.c #22
Eupercaria	ANCESTRAL SPECIES																	ENSGT00390000005639.a.b.c #22
Tetraodontidae	ANCESTRAL SPECIES																	ENSGT00390000005639.a.b.c #22
Tetraodon	MODERN SPECIES	26	ENSTNIG00000002828	SERP2 (ENSTNIG00000002232)	znhit1 (ENSTNIG00000002131)	tcea3 (ENSTNIG00000019750)	ENSTNIG00000019751	ENSTNIG00000019754	ENSTNIG00000019755	josd2 (ENSTNIG00000019756)	FIBIN (ENSTNIG00000019757)	ENSTNIG00000019758	ENSTNIG00000019759	dync2i2 (ENSTNIG00000019760)	ENSTNIG00000019761	ENSTNIG00000019763	ENSTNIG00000019765	ENSTNIG00000019766 #22	ENSTNIG00000001573	dtnba (ENSTNIG00000001828)	ENSTNIG00000001829	ENSTNIG00000001831	ENSTNIG00000001832	nucb1 (ENSTNIG00000001833)	ENSTNIG00000001835	ENSTNIG00000001836	ENSTNIG00000001837	cdipt (ENSTNIG00000001838)	znf395b (ENSTNIG00000001839)	ENSTNIG00000001840	ENSTNIG00000002241	ENSTNIG00000001842	ENSTNIG00000001843
Clupeocephala	DUPLICATION
Clupeocephala	ANCESTRAL SPECIES	400									ENSGT00530000064017.a	ENSGT00390000009747 #9	ENSGT00940000157919.a.a #8	ENSGT00940000155737.a.b ##7	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546
Otomorpha	ANCESTRAL SPECIES	67															ENSGT00950000183100.B	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000165188	ENSGT00940000157052	ENSGT00390000010398.A	ENSGT00950000182815.a.a.a.b	ENSGT00950000182898.a.a.b	ENSGT00940000165949	ENSGT00940000156695	ENSGT00390000014606	ENSGT00940000168294	ENSGT00730000111092 #20	ENSGT00950000183079.B	ENSGT00940000157528	ENSGT00940000157851
Clupeiformes	ANCESTRAL SPECIES	94	ENSGT01030000234633.C.a.c	ENSGT00940000156225	ENSGT00940000154877.B	ENSGT01100000263502.B.a.a.d.b.d	ENSGT00950000183027.a.b.c.a	ENSGT00950000183054.b.d	ENSGT00940000156481.a.a.a.a	ENSGT00940000157656.b	ENSGT00940000156237	ENSGT00940000156999	ENSGT00940000164412.a.a.b	ENSGT00390000007683	ENSGT00390000014293.b	ENSGT00570000079168.b.b.a.c	ENSGT00950000183100.B	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000165188	ENSGT00940000157052	ENSGT00390000010398.A	ENSGT00950000182815.a.a.a.b	ENSGT00950000182898.a.a.b	ENSGT00940000156695	ENSGT00390000014606	ENSGT00730000111092 #20	ENSGT00950000183079.B	ENSGT00940000157528	ENSGT00940000157851	ENSGT00390000008798.d.b	ENSGT00390000009877
Atlantic herring	MODERN SPECIES	4	ENSCHAG00000000776	opn4a (ENSCHAG00000001033)	ENSCHAG00000001521	ENSCHAG00000001533	myoz1a (ENSCHAG00000001598)	SYNPO2L (ENSCHAG00000001621)	ENSCHAG00000001687	ENSCHAG00000002309	NDST2 (ENSCHAG00000002649)	zswim8 (ENSCHAG00000005956)	ENSCHAG00000011630	chchd1 (ENSCHAG00000011676)	ENSCHAG00000011690	ENSCHAG00000011754	polr1c (ENSCHAG00000011767)	ldb1a (ENSCHAG00000012037) #22	ENSCHAG00000012538	ENSCHAG00000012563	nsmce4a (ENSCHAG00000012591)	ENSCHAG00000012616	ly6pge (ENSCHAG00000012647)	unc5b (ENSCHAG00000012834)	nolc1 (ENSCHAG00000016787) #20	mrps6 (ENSCHAG00000016801)	psap (ENSCHAG00000016823)	SLC29A3 (ENSCHAG00000016976)	OIT3 (ENSCHAG00000017001)	ENSCHAG00000017152	micu1 (ENSCHAG00000017193)	ENSCHAG00000017202	C6orf118 (ENSCHAG00000017214)
Denticle herring	MODERN SPECIES	18	bmpr1aa (ENSDCDG00000012414)	ldb3a (ENSDCDG00000012564)	opn4a (ENSDCDG00000012673)	myoz1a (ENSDCDG00000012719)	SYNPO2L (ENSDCDG00000012727)	ENSDCDG00000012794	ENSDCDG00000013702	ENSDCDG00000013708	NDST2 (ENSDCDG00000013747)	zswim8 (ENSDCDG00000016506)	ENSDCDG00000022340	chchd1 (ENSDCDG00000022352)	ENSDCDG00000022354	ENSDCDG00000022362	polr1c (ENSDCDG00000022367)	ldb1a (ENSDCDG00000022402) #22	ENSDCDG00000022732	HPS6 (ENSDCDG00000022736)	nsmce4a (ENSDCDG00000022738)	ly6pge (ENSDCDG00000022742)	unc5b (ENSDCDG00000003525)	SLC29A3 (ENSDCDG00000010815)	psap (ENSDCDG00000010826)	mrps6 (ENSDCDG00000010845)	nolc1 (ENSDCDG00000010851) #20	micu1 (ENSDCDG00000010866)	mcu (ENSDCDG00000010879)	OIT3 (ENSDCDG00000010883)	pla2g12b (ENSDCDG00000010900)	pde10a (ENSDCDG00000011532)	TBXT (ENSDCDG00000012038)
Otophysi	ANCESTRAL SPECIES	26	ENSGT00390000018730.B	ENSGT00940000159583	ENSGT00940000155884.a	ENSGT00390000009155	ENSGT00940000158698 #37	ENSGT00940000164095.a	ENSGT00940000159518.a #29	ENSGT00390000005029 #30	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000155588.b	ENSGT00390000015849	ENSGT00940000163289.b.a.b	ENSGT00940000154418.a.a.a	ENSGT00940000158034	ENSGT00950000183100.B	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000165188	ENSGT00940000157052	ENSGT00390000010398.A	ENSGT00950000182815.a.a.a.b	ENSGT00940000154741.c	ENSGT00390000003652.c.b	ENSGT00950000183125.b.a.b	ENSGT00390000002871	ENSGT01060000248556.A.b.a	ENSGT00940000159449.d	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000156033.e	ENSGT00940000159143.d
Characiphysae	ANCESTRAL SPECIES	13	ENSGT00940000159583	ENSGT00940000155884.a	ENSGT00390000009155	ENSGT00940000158698 #37	ENSGT00940000164611.b	ENSGT00940000164095.a	ENSGT00940000159518.a #29	ENSGT00390000005029 #30	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000155588.b	ENSGT00390000015849	ENSGT00940000163289.b.a.b	ENSGT00940000154418.a.a.a	ENSGT00940000158034	ENSGT00950000183100.B	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000165188	ENSGT00940000157052	ENSGT00390000010398.A	ENSGT00950000182815.a.a.a.b	ENSGT00940000154741.c	ENSGT00390000003652.c.b	ENSGT00950000183125.b.a.b	ENSGT00390000002871	ENSGT01060000248556.A.b.a	ENSGT00940000159449.d	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000156033.e	ENSGT00940000159143.d
Channel catfish	MODERN SPECIES	22	B3GAT2 (ENSIPUG00000024274)	smap1 (ENSIPUG00000024326)	sdhaf4 (ENSIPUG00000024338)	TLX1 (ENSIPUG00000024339) #37	ENSIPUG00000024340	slc2a15a (ENSIPUG00000024343)	fgf8a (ENSIPUG00000024347) #29	fbxw4 (ENSIPUG00000024432) #30	wbp1l (ENSIPUG00000024436)	cyp17 (ENSIPUG00000024439)	borcs7 (ENSIPUG00000024448)	cnnm2 (ENSIPUG00000024452)	NT5C2 (ENSIPUG00000024453)	pcgf6 (ENSIPUG00000024462)	polr1c (ENSIPUG00000024464)	ldb1 (ENSIPUG00000024466) #22	prom1a (ENSIPUG00000024468)	ENSIPUG00000024469	nsmce4a (ENSIPUG00000024470)	ENSIPUG00000024472	ly6pge (ENSIPUG00000024475)	unc5b (ENSIPUG00000024476)	MYOF (ENSIPUG00000024482)	PARG (ENSIPUG00000024555)	OGDHL (ENSIPUG00000024579)	ENSIPUG00000024595	zgc:153142 (ENSIPUG00000024596)	chat (ENSIPUG00000024599)	slc18a3a (ENSIPUG00000024600)	rgra (ENSIPUG00000024602)	lrit1a (ENSIPUG00000024605)
Characiphysae_b	ANCESTRAL SPECIES	10	ENSGT00940000159583	ENSGT00940000155884.a	ENSGT00390000009155	ENSGT00940000158698 #37	ENSGT00940000164611.b	ENSGT00940000164095.a	ENSGT00940000159518.a #29	ENSGT00390000005029 #30	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000155588.b	ENSGT00390000015849	ENSGT00940000163289.b.a.b	ENSGT00940000154418.a.a.a	ENSGT00940000158034	ENSGT00950000183100.B	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000165188	ENSGT00940000157052	ENSGT00390000010398.A	ENSGT00950000182815.a.a.a.b	ENSGT00940000154741.c	ENSGT00390000003652.c.b	ENSGT00950000183125.b.a.b	ENSGT00390000002871	ENSGT01060000248556.A.b.a	ENSGT00940000159449.d	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000156033.e	ENSGT00940000159143.d
Characoidei	ANCESTRAL SPECIES	5	ENSGT00940000159583	ENSGT00940000155884.a	ENSGT00390000009155	ENSGT00940000158698 #37	ENSGT00940000164611.b	ENSGT00940000164095.a	ENSGT00940000159518.a #29	ENSGT00390000005029 #30	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000155588.b	ENSGT00390000015849	ENSGT00940000163289.b.a.b	ENSGT00940000154418.a.a.a	ENSGT00940000158034	ENSGT00950000183100.B	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000165188	ENSGT00940000157052	ENSGT00390000010398.A	ENSGT00950000182815.a.a.a.b	ENSGT00940000154741.c	ENSGT00390000003652.c.b	ENSGT00950000183125.b.a.b	ENSGT00390000002871	ENSGT01060000248556.A.b.a	ENSGT00940000159449.d	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000156033.e	ENSGT00940000159143.d
Red-bellied piranha	MODERN SPECIES	10	smap1 (ENSPNAG00000008623)	SDHAF4 (ENSPNAG00000001114)	tlx1 (ENSPNAG00000006029) #37	ENSPNAG00000001103	slc2a15a (ENSPNAG00000008571)	fgf8a (ENSPNAG00000008557) #29	fbxw4 (ENSPNAG00000001068) #30	wbp1la (ENSPNAG00000001064)	cyp17a1 (ENSPNAG00000007027)	borcs7 (ENSPNAG00000008503)	cnnm2a (ENSPNAG00000001058)	nt5c2a (ENSPNAG00000001046)	inaa (ENSPNAG00000008457)	pcgf6 (ENSPNAG00000001021)	polr1c (ENSPNAG00000008443)	ldb1a (ENSPNAG00000000981) #22	ENSPNAG00000000955	ENSPNAG00000000946	nsmce4a (ENSPNAG00000008367)	ENSPNAG00000000925	ENSPNAG00000008328	ly6pge (ENSPNAG00000000894)	unc5b (ENSPNAG00000008315)	MYOF (ENSPNAG00000005929)	PARG (ENSPNAG00000008246)	OGDHL (ENSPNAG00000008229)	zgc:153142 (ENSPNAG00000000771)	chata (ENSPNAG00000008191)	slc18a3a (ENSPNAG00000008171)	rgra (ENSPNAG00000000730)	lrit1a (ENSPNAG00000000718)
Mexicana tetra	MODERN SPECIES	17	smap1 (ENSAMXG00000043334)	SDHAF4 (ENSAMXG00000035767)	tlx1 (ENSAMXG00000011990) #37	ENSAMXG00000033957	slc2a15a (ENSAMXG00000012007)	fgf8 (ENSAMXG00000034070) #29	fbxw4 (ENSAMXG00000033937) #30	wbp1la (ENSAMXG00000033725)	cyp17a1 (ENSAMXG00000012029)	borcs7 (ENSAMXG00000012036)	cnnm2a (ENSAMXG00000012039)	nt5c2a (ENSAMXG00000039026)	inaa (ENSAMXG00000012052)	pcgf6 (ENSAMXG00000012056)	polr1c (ENSAMXG00000012062)	ldb1a (ENSAMXG00000038752) #22	ENSAMXG00000012078	ENSAMXG00000037294	nsmce4a (ENSAMXG00000012091)	ENSAMXG00000035371	ly6pge (ENSAMXG00000012106)	unc5b (ENSAMXG00000038405)	MYOF (ENSAMXG00000012110)	PARG (ENSAMXG00000012116)	OGDHL (ENSAMXG00000012121)	zgc:153142 (ENSAMXG00000038291)	chata (ENSAMXG00000012130)	slc18a3a (ENSAMXG00000025615)	rgra (ENSAMXG00000042717)	lrit1a (ENSAMXG00000036935)	lrit2 (ENSAMXG00000039220)
Electric eel	MODERN SPECIES	768														pcgf6 (ENSEEEG00000022322)	polr1c (ENSEEEG00000022323)	ldb1a (ENSEEEG00000022331) #22	ENSEEEG00000022367	ENSEEEG00000022370	nsmce4a (ENSEEEG00000022372)	ENSEEEG00000022378	ly6pge (ENSEEEG00000022382)
Cyprinoidei	ANCESTRAL SPECIES	11	ENSGT00940000159583	ENSGT00940000155884.a	ENSGT00390000009155	ENSGT00940000158698 #37	ENSGT00940000164611.b	ENSGT00940000164095.a	ENSGT00940000159518.a #29	ENSGT00390000005029 #30	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000155588.b	ENSGT00390000015849	ENSGT00940000163289.b.a.b	ENSGT00940000154418.a.a.a	ENSGT00940000158034	ENSGT00950000183100.B	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000165188	ENSGT00940000157052	ENSGT00390000010398.A	ENSGT00950000182815.a.a.a.b	ENSGT00940000154741.c	ENSGT00390000003652.c.b	ENSGT00950000183125.b.a.b	ENSGT00390000002871	ENSGT01060000248556.A.b.a	ENSGT00940000159449.d	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000156033.e	ENSGT00940000159143.d
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	159	ENSGT00940000155884.a.f	ENSGT00390000009155.a	ENSGT00940000158698.i #37	ENSGT00940000164611.b.k.b	ENSGT00940000164095.a.b	ENSGT00940000159518.a.a #29	ENSGT00390000005029.e #30	ENSGT00950000183109.c.a.a.a.a.a	ENSGT00940000155588.b	ENSGT00390000015849.j	ENSGT00940000159034.kb.b	ENSGT00940000163289.b.a.b.d	ENSGT00940000154418.a.a.a.b	ENSGT00940000158034.p	ENSGT00950000183100.B.a.b	ENSGT00390000005639.a.b.d.a.a #22	ENSGT00530000063586.a.f	ENSGT00390000001546.d	ENSGT00940000165188.a	ENSGT00940000157052.d	ENSGT00390000010398.A.d	ENSGT00950000182815.a.a.a.b.a	ENSGT00940000154741.c.b	ENSGT00390000003652.c.b.b	ENSGT00950000183125.b.a.b.c	ENSGT00390000002871	ENSGT01060000248556.A.b.a.a	ENSGT00940000159449.d.a	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000156033.e.a	ENSGT00940000159143.d.b
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	31	PKD2L1 (ENSCARG00000013302)	atoh7 (ENSCARG00000013299)	ENSCARG00000013295	SLC24A3 (ENSCARG00000013260)	RIN2 (ENSCARG00000013236)	slc17a5 (ENSCARG00000013199)	eef1a1a (ENSCARG00000013182)	CGAS (ENSCARG00000013172)	ddx43 (ENSCARG00000013125)	KCNQ5 (ENSCARG00000011671)	RIMS1 (ENSCARG00000010768)	asrgl1 (ENSCARG00000010677)	inaa (ENSCARG00000010665)	pcgf6 (ENSCARG00000010656)	polr1c (ENSCARG00000010548)	ldb1a (ENSCARG00000010138) #22	ENSCARG00000010091	ENSCARG00000010073	nsmce4a (ENSCARG00000010063)	ENSCARG00000010000	ly6pge (ENSCARG00000009982)	si:dkey-18j18.3 (ENSCARG00000009978)	rock2a (ENSCARG00000009893)	ENSCARG00000009866	sobpa (ENSCARG00000009853)	pdss2 (ENSCARG00000009847)	bend3 (ENSCARG00000009840)	mtres1 (ENSCARG00000009837)	matn3b (ENSCARG00000009807)	wdr35 (ENSCARG00000009784)	kcns3a (ENSCARG00000009777)
Goldfish	MODERN SPECIES	31	oip5 (ENSCARG00000047709)	nusap1 (ENSCARG00000047646)	rtf1 (ENSCARG00000047080)	golga5 (ENSCARG00000045110)	trip11 (ENSCARG00000041493)	fbln5 (ENSCARG00000040627)	TC2N (ENSCARG00000040576)	plek2 (ENSCARG00000040533)	si:ch211-10a23.2 (ENSCARG00000040493)	zfyve26 (ENSCARG00000040086)	rdh12 (ENSCARG00000040059)	vti1b (ENSCARG00000039968)	arg2 (ENSCARG00000039526)	ENSCARG00000039483	KCNF1 (ENSCARG00000039478)	ldb1a (ENSCARG00000039232) #22	ENSCARG00000039100	ENSCARG00000039015	nsmce4a (ENSCARG00000039001)	ccdc85a (ENSCARG00000038984)	vrk2 (ENSCARG00000038926)	fancl (ENSCARG00000038865)	kcns3a (ENSCARG00000038845)	wdr35 (ENSCARG00000038680)	matn3b (ENSCARG00000038571)	mtres1 (ENSCARG00000038554)	bend3 (ENSCARG00000038542)	pdss2 (ENSCARG00000038533)	fgfr2 (ENSCARG00000036312)	marcksl1a (ENSCARG00000036220)	ENSCARG00000036212
Cyprininae_a	ANCESTRAL SPECIES	101	ENSGT00940000155884.a.f	ENSGT00390000009155.a	ENSGT00940000158698.i #37	ENSGT00940000164611.b.k.b	ENSGT00940000164095.a.b	ENSGT00940000159518.a.a #29	ENSGT00390000005029.e #30	ENSGT00950000183109.c.a.a.a.a.a	ENSGT00940000155588.b.a	ENSGT00390000015849.i.b	ENSGT00940000159034.kb.b	ENSGT00940000163289.b.a.b.d	ENSGT00940000154418.a.a.a.b	ENSGT00940000158034.p	ENSGT00950000183100.B.a.a	ENSGT00390000005639.a.b.d.a.a #22	ENSGT00530000063586.a.f	ENSGT00390000001546.d	ENSGT00940000165188.a	ENSGT00940000157052.d	ENSGT00390000010398.A.d	ENSGT00950000182815.a.a.a.b.a	ENSGT00940000154741.c.b	ENSGT00390000003652.c.b.b	ENSGT00950000183125.b.a.b.c	ENSGT00390000002871	ENSGT01060000248556.A.b.a.a	ENSGT00940000159449.d.a	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000156033.e.a	ENSGT00940000159143.d.b
Common carp reference	MODERN SPECIES	48	smap1 (ENSCCRG00000081017)	SDHAF4 (ENSCCRG00000064793)	tlx1 (ENSCCRG00000073948) #37	ENSCCRG00000069064	slc2a15a (ENSCCRG00000015324)	fgf8a (ENSCCRG00000010033) #29	fbxw4 (ENSCCRG00000010031) #30	wbp1la (ENSCCRG00000078206)	cyp17a1 (ENSCCRG00000010022)	borcs7 (ENSCCRG00000072536)	cnnm2a (ENSCCRG00000008778)	nt5c2a (ENSCCRG00000008908)	inaa (ENSCCRG00000010014)	pcgf6 (ENSCCRG00000035757)	polr1c (ENSCCRG00000035743)	ldb1a (ENSCCRG00000077621) #22	ENSCCRG00000008310	ENSCCRG00000008496	nsmce4a (ENSCCRG00000008254)	ENSCCRG00000055785	ly6pge (ENSCCRG00000008128)	ENSCCRG00000016412	unc5b (ENSCCRG00000015978)	ENSCCRG00000015101	OGDHL (ENSCCRG00000044715)	zgc:153142 (ENSCCRG00000015899)	chata (ENSCCRG00000015254)	slc18a3a (ENSCCRG00000015234)	rgra (ENSCCRG00000012497)	lrit1a (ENSCCRG00000074471)	cdhr1a (ENSCCRG00000012529)
Golden-line barbel	MODERN SPECIES	105	smap1 (ENSSGRG00000043150)	SDHAF4 (ENSSGRG00000043149)	tlx1 (ENSSGRG00000043148) #37	ENSSGRG00000043147	slc2a15a (ENSSGRG00000043143)	fgf8a (ENSSGRG00000043139) #29	fbxw4 (ENSSGRG00000043135) #30	wbp1la (ENSSGRG00000043124)	cyp17a1 (ENSSGRG00000042981)	borcs7 (ENSSGRG00000042980)	cnnm2a (ENSSGRG00000042979)	nt5c2a (ENSSGRG00000042916)	inaa (ENSSGRG00000042911)	pcgf6 (ENSSGRG00000042910)	polr1c (ENSSGRG00000042884)	ldb1a (ENSSGRG00000042844) #22	ENSSGRG00000042842	ENSSGRG00000042841	nsmce4a (ENSSGRG00000042840)	ENSSGRG00000042839	ly6pge (ENSSGRG00000042837)	unc5b (ENSSGRG00000041650)	MYOF (ENSSGRG00000041365)	PARG (ENSSGRG00000041333)	OGDHL (ENSSGRG00000037474)	zgc:153142 (ENSSGRG00000037441)	chata (ENSSGRG00000037392)	rgra (ENSSGRG00000037371)	lrit1a (ENSSGRG00000037370)	lrit2 (ENSSGRG00000037369)	cdhr1a (ENSSGRG00000037251)
Cyprininae	ANCESTRAL SPECIES	384	ENSGT00940000159583.n	ENSGT00940000155884.a.e	ENSGT00390000009155.b	ENSGT00940000158698.j #37	ENSGT00940000164611.b.k.a	ENSGT00940000164095.a.a	ENSGT00940000159518.a.b #29	ENSGT00390000005029.f #30	ENSGT00950000183109.c.a.a.a.a.b	ENSGT00390000015849.i.a.b	ENSGT00940000159034.kb.a	ENSGT00940000163289.b.a.b.c	ENSGT00940000154418.a.a.a.a	ENSGT00940000158034.o	ENSGT00950000183100.B.b	ENSGT00390000005639.a.b.d.a.b #22	ENSGT00530000063586.a.e	ENSGT00390000001546.c	ENSGT00940000165188.b	ENSGT00940000157052.c	ENSGT00390000010398.A.c	ENSGT00950000182815.a.a.a.b.b	ENSGT00940000154741.c.a	ENSGT00390000003652.c.b.a	ENSGT01060000248556.A.b.a.b	ENSGT00940000159449.d.b
Goldfish	MODERN SPECIES	4	b3gat2 (ENSCARG00000010362)	smap1 (ENSCARG00000010288)	SDHAF4 (ENSCARG00000010273)	tlx1 (ENSCARG00000010261) #37	ENSCARG00000010255	slc2a15a (ENSCARG00000010237)	fgf8a (ENSCARG00000010217) #29	fbxw4 (ENSCARG00000010202) #30	wbp1la (ENSCARG00000010199)	borcs7 (ENSCARG00000010191)	cnnm2a (ENSCARG00000010165)	nt5c2a (ENSCARG00000009652)	inaa (ENSCARG00000009609)	pcgf6 (ENSCARG00000009593)	POLR1C (ENSCARG00000009582)	ldb1a (ENSCARG00000008642) #22	ENSCARG00000008560	ENSCARG00000008552	nsmce4a (ENSCARG00000008542)	ENSCARG00000008515	ly6pge (ENSCARG00000008506)	ENSCARG00000008502	pald1b (ENSCARG00000008400)	rps24 (ENSCARG00000008367)	flrt3 (ENSCARG00000008358)	mad2l1bp (ENSCARG00000008350)	ENSCARG00000008328	mgme1 (ENSCARG00000008319)	snx5 (ENSCARG00000007882)	rrbp1a (ENSCARG00000007848)	ENSCARG00000007207
Cyprininae_a	ANCESTRAL SPECIES	107	ENSGT00390000009155.b	ENSGT00940000158698.j #37	ENSGT00940000164611.b.k.a	ENSGT00940000164095.a.a	ENSGT00940000159518.a.b #29	ENSGT00390000005029.f #30	ENSGT00950000183109.c.a.a.a.a.b	ENSGT00940000155588.b.b	ENSGT00390000015849.j	ENSGT00390000015849.i.a.b	ENSGT00940000159034.kb.a	ENSGT00940000163289.b.a.b.c	ENSGT00940000154418.a.a.a.a	ENSGT00940000158034.o	ENSGT00950000183100.B.b	ENSGT00390000005639.a.b.d.a.b #22	ENSGT00530000063586.a.e	ENSGT00390000001546.c	ENSGT00940000165188.b	ENSGT00940000157052.c	ENSGT00390000010398.A.c	ENSGT00950000182815.a.a.a.b.b	ENSGT00940000154741.c.a	ENSGT00950000183125.b.a.b.d	ENSGT00390000003652.c.b.a	ENSGT01060000248556.A.b.a.b	ENSGT00940000159449.d.b	ENSGT00940000156033.e.b	ENSGT00940000159143.d.a	ENSGT00940000155509.b.b.b	ENSGT00940000161045.b.a
Common carp reference	MODERN SPECIES	18	smap1 (ENSCCRG00000077009)	SDHAF4 (ENSCCRG00000062363)	tlx1 (ENSCCRG00000062204) #37	ENSCCRG00000078379	ENSCCRG00000077372	slc2a15a (ENSCCRG00000034481)	fgf8a (ENSCCRG00000058573) #29	fbxw4 (ENSCCRG00000081048) #30	wbp1la (ENSCCRG00000008830)	borcs7 (ENSCCRG00000080250)	cnnm2a (ENSCCRG00000067197)	nt5c2a (ENSCCRG00000069262)	inaa (ENSCCRG00000008627)	pcgf6 (ENSCCRG00000008611)	polr1c (ENSCCRG00000078507)	ldb1a (ENSCCRG00000008367) #22	ENSCCRG00000081966	ENSCCRG00000008289	ENSCCRG00000008233	ly6pge (ENSCCRG00000019026)	unc5b (ENSCCRG00000011439)	ENSCCRG00000015313	ENSCCRG00000053860	ENSCCRG00000035335	ENSCCRG00000015207	chata (ENSCCRG00000050678)	slc18a3a (ENSCCRG00000050669)	lrit1a (ENSCCRG00000012663)	cdhr1a (ENSCCRG00000044608)	chst3a (ENSCCRG00000012665)	pax2a (ENSCCRG00000049677)
Golden-line barbel	MODERN SPECIES	68	smap1 (ENSSGRG00000028411)	SDHAF4 (ENSSGRG00000028409)	tlx1 (ENSSGRG00000028408) #37	ENSSGRG00000028407	slc2a15a (ENSSGRG00000028377)	fgf8a (ENSSGRG00000028374) #29	fbxw4 (ENSSGRG00000028373) #30	wbp1la (ENSSGRG00000028372)	cyp17a1 (ENSSGRG00000028369)	borcs7 (ENSSGRG00000028368)	cnnm2a (ENSSGRG00000028351)	nt5c2a (ENSSGRG00000027341)	inaa (ENSSGRG00000027325)	pcgf6 (ENSSGRG00000027324)	POLR1C (ENSSGRG00000027316)	ldb1a (ENSSGRG00000027260) #22	ENSSGRG00000027253	ENSSGRG00000027248	nsmce4a (ENSSGRG00000027234)	ENSSGRG00000027198	ly6pge (ENSSGRG00000027196)	unc5b (ENSSGRG00000027176)	MYOF (ENSSGRG00000026718)	OGDHL (ENSSGRG00000026698)	zgc:153142 (ENSSGRG00000026695)	chata (ENSSGRG00000026675)	rgra (ENSSGRG00000026669)	lrit1a (ENSSGRG00000026668)	lrit2 (ENSSGRG00000026667)	cdhr1a (ENSSGRG00000026418)	chst3a (ENSSGRG00000026415)
Zebrafish	MODERN SPECIES	4	sdhaf4 (ENSDARG00000039390)	tlx1 (ENSDARG00000003965) #37	lbx1a (ENSDARG00000018321)	slc2a15a (ENSDARG00000029894)	fgf8a (ENSDARG00000003399) #29	fbxw4 (ENSDARG00000033551) #30	wbp1la (ENSDARG00000013245)	cyp17a1 (ENSDARG00000033566)	borcs7 (ENSDARG00000055070)	cnnm2a (ENSDARG00000061195)	nt5c2a (ENSDARG00000039399)	inaa (ENSDARG00000011862)	pcgf6 (ENSDARG00000069681)	polr1c (ENSDARG00000039400)	ENSDARG00000095011	ldb1a (ENSDARG00000010137) #22	ENSDARG00000039406	nsmce4a (ENSDARG00000024311)	ENSDARG00000062790	ly6pge (ENSDARG00000098392)	unc5b (ENSDARG00000033327)	MYOF (ENSDARG00000017128)	PARG (ENSDARG00000061114)	OGDHL (ENSDARG00000079249)	C13H10orf53 (ENSDARG00000069363)	chata (ENSDARG00000015854)	slc18a3a (ENSDARG00000006356)	rgra (ENSDARG00000054890)	lrit1a (ENSDARG00000019179)	lrit2 (ENSDARG00000030626)	cdhr1a (ENSDARG00000004643)
Euteleosteomorpha	ANCESTRAL SPECIES	122	ENSGT00940000161964.g.a	ENSGT00940000177496	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546
Acanthomorphata	ANCESTRAL SPECIES	16	ENSGT00940000161964.g.a	ENSGT00940000177496	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000157798.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000162611.a.b	ENSGT00940000170319	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00730000111173.g	ENSGT00940000153956.b
Euacanthomorphacea	ANCESTRAL SPECIES	6	ENSGT00940000161964.g.a	ENSGT00940000177496	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000157798.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00940000175336.a	ENSGT00940000162611.a.b	ENSGT00730000111173.g	ENSGT00940000153956.b
Percomorphaceae	ANCESTRAL SPECIES	5	ENSGT00940000161964.g.a	ENSGT00940000177496	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000157798.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00940000175336.a	ENSGT00940000162611.a.b	ENSGT00730000111173.g	ENSGT00940000153956.b
Percomorphaceae_B	ANCESTRAL SPECIES	4	ENSGT00940000161964.g.a	ENSGT00940000177496	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000157798.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00940000168493	ENSGT00940000175336.a	ENSGT00940000162611.a.b	ENSGT00730000111173.g
Percomorphaceae_C	ANCESTRAL SPECIES	18	ENSGT00940000161964.g.a	ENSGT00940000177496	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000157798.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00730000111173.g	ENSGT00940000153956.b	ENSGT00940000165889	ENSGT00390000015298
Percomorphaceae_D	ANCESTRAL SPECIES	19	ENSGT00940000161964.g.a	ENSGT00940000177496	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000157798.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00730000111173.g	ENSGT00940000153956.b	ENSGT00940000165889	ENSGT00390000015298
Anabantaria	ANCESTRAL SPECIES	17	ENSGT00940000155133.a.a.a	ENSGT00940000161964.g.a	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000157798.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00940000168493	ENSGT00730000111173.g	ENSGT00940000153956.b	ENSGT00940000165889
Anabantoidei	ANCESTRAL SPECIES	17	ENSGT00940000155133.a.a.a	ENSGT00940000161964.g.a	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000157798.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00940000162611.b	ENSGT00940000168493	ENSGT00940000153956.b	ENSGT00940000165889
Climbing perch	MODERN SPECIES	6	ENSATEG00000022545	ENSATEG00000022555	ENSATEG00000022566	ENSATEG00000022572	prdm8 (ENSATEG00000022576)	ENSATEG00000022590	rrp12 (ENSATEG00000022627)	ENSATEG00000022664	zdhhc16a (ENSATEG00000022673)	mettl18 (ENSATEG00000022695)	sufu (ENSATEG00000022700) #9	ENSATEG00000022734 #8	npm3 (ENSATEG00000022752) #28	oga (ENSATEG00000022765) #27	PPRC1 (ENSATEG00000022844) #21	ENSATEG00000000068 #22	ENSATEG00000000127	HPS6 (ENSATEG00000000137)	ENSATEG00000000183 #26	ENSATEG00000000233	ENSATEG00000000242	ENSATEG00000000283	ENSATEG00000000291	ARHGAP19 (ENSATEG00000000347)	ENSATEG00000000357	ENSATEG00000000527	ENSATEG00000000532	ENSATEG00000029114	ENSATEG00000000577	st3gal7 (ENSATEG00000000723)	hps1 (ENSATEG00000000728)
Siamese fighting fish	MODERN SPECIES	6	ENSBSLG00000025342	ENSBSLG00000025343	ENSBSLG00000025344	GDF10 (ENSBSLG00000025346)	prdm8 (ENSBSLG00000013167)	ENSBSLG00000013322	rrp12 (ENSBSLG00000013724)	UBTD1 (ENSBSLG00000013788)	zdhhc16a (ENSBSLG00000013794)	mettl18 (ENSBSLG00000013821)	sufu (ENSBSLG00000013844) #9	trim8b (ENSBSLG00000014376) #8	npm3 (ENSBSLG00000014393) #28	oga (ENSBSLG00000014727) #27	PPRC1 (ENSBSLG00000015137) #21	ldb1a (ENSBSLG00000015264) #22	ENSBSLG00000015637	HPS6 (ENSBSLG00000015659)	KCNIP2 (ENSBSLG00000016791) #26	cox15 (ENSBSLG00000017325)	cutc (ENSBSLG00000017567)	ENSBSLG00000017804	ENSBSLG00000020035	ARHGAP19 (ENSBSLG00000020038)	slit1a (ENSBSLG00000020170)	ENSBSLG00000020796	ENSBSLG00000020797	ENSBSLG00000020803	ENSBSLG00000020808	ANKRD2 (ENSBSLG00000020811)	st3gal7 (ENSBSLG00000020817)
Zig-zag eel	MODERN SPECIES	6	ENSMAMG00000003932	ENSMAMG00000003920	ENSMAMG00000003912	ENSMAMG00000003258	prdm8 (ENSMAMG00000003228)	ENSMAMG00000003162	rrp12 (ENSMAMG00000002964)	ENSMAMG00000002933	zdhhc16a (ENSMAMG00000002913)	mettl18 (ENSMAMG00000002903)	sufu (ENSMAMG00000002801) #9	ENSMAMG00000002766 #8	npm3 (ENSMAMG00000025905) #28	oga (ENSMAMG00000002591) #27	PPRC1 (ENSMAMG00000002564) #21	LDB1 (ENSMAMG00000002530) #22	ENSMAMG00000002485	HPS6 (ENSMAMG00000002453)	ENSMAMG00000002419 #26	ENSMAMG00000002386	ENSMAMG00000002346	ENSMAMG00000001950	ENSMAMG00000001887	ARHGAP19 (ENSMAMG00000001865)	ENSMAMG00000001778	ENSMAMG00000001729	ENSMAMG00000028573	ENSMAMG00000027836	morn4 (ENSMAMG00000001711)	ENSMAMG00000001686	st3gal7 (ENSMAMG00000001658)
Carangaria	ANCESTRAL SPECIES	19	ENSGT00940000161964.g.a	ENSGT00940000177496	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000157798.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00940000162611.a.b	ENSGT00730000111173.g	ENSGT00940000153956.b	ENSGT00940000165889
Pleuronectoidei	ANCESTRAL SPECIES	25	ENSGT00940000155133.a.a.a	ENSGT00940000177496	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000157798.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00730000111173.g	ENSGT00940000153956.b	ENSGT00940000165889	ENSGT00390000015298
Turbot	MODERN SPECIES	6	ARHGAP22 (ENSSMAG00000004339)	mapk8a (ENSSMAG00000004251)	ENSSMAG00000027110	ENSSMAG00000004216	prdm8 (ENSSMAG00000029425)	ENSSMAG00000004186	rrp12 (ENSSMAG00000004047)	ENSSMAG00000003985	zdhhc16a (ENSSMAG00000003970)	mettl18 (ENSSMAG00000030633)	sufu (ENSSMAG00000003938) #9	ENSSMAG00000003912 #8	npm3 (ENSSMAG00000035020) #28	oga (ENSSMAG00000003844) #27	ENSSMAG00000003824 #21	LDB1 (ENSSMAG00000003766) #22	ENSSMAG00000003700	ENSSMAG00000003627 #26	ENSSMAG00000003608	ENSSMAG00000003582	ENSSMAG00000003547	ARHGAP19 (ENSSMAG00000003538)	ENSSMAG00000003352	ENSSMAG00000003340	ENSSMAG00000003337	morn4 (ENSSMAG00000003311)	ENSSMAG00000003260	st3gal7 (ENSSMAG00000003246)	hps1 (ENSSMAG00000003230)	HPSE2 (ENSSMAG00000003124)	CNNM1 (ENSSMAG00000003081)
Tongue sole	MODERN SPECIES	3	ENSCSEG00000007557	ENSCSEG00000007574	ENSCSEG00000007598	GDF10 (ENSCSEG00000007622)	prdm8 (ENSCSEG00000007763)	ENSCSEG00000007770	rrp12 (ENSCSEG00000007799)	UBTD1 (ENSCSEG00000007888)	zdhhc16a (ENSCSEG00000007902)	mettl18 (ENSCSEG00000007916)	sufu (ENSCSEG00000007920) #9	TRIM8 (ENSCSEG00000007933) #8	npm3 (ENSCSEG00000007944) #28	oga (ENSCSEG00000007954) #27	ENSCSEG00000008017 #21	ldb1a (ENSCSEG00000008048) #22	ENSCSEG00000008076	ENSCSEG00000008144	HPS6 (ENSCSEG00000008165)	KCNIP2 (ENSCSEG00000008183) #26	ENSCSEG00000008259	cox15 (ENSCSEG00000008347)	ENSCSEG00000008357	ARHGAP19 (ENSCSEG00000008364)	slit1a (ENSCSEG00000008374)	ENSCSEG00000008425	ENSCSEG00000008438	ENSCSEG00000008442	msx3 (ENSCSEG00000008449)	znf511 (ENSCSEG00000008464)	ENSCSEG00000008492
Carangaria_A	ANCESTRAL SPECIES	29	ENSGT00940000161964.g.a	ENSGT00940000177496	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000157798.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a
Barramundi perch	MODERN SPECIES	260	FRMPD2 (ENSLCAG00010003799)	ENSLCAG00010003820	PTPN20 (ENSLCAG00010003823)	GDF10 (ENSLCAG00010003832)	prdm8 (ENSLCAG00010003835)	ENSLCAG00010003842	rrp12 (ENSLCAG00010003902)	UBTD1 (ENSLCAG00010004124)	zdhhc16a (ENSLCAG00010004129)	mettl18 (ENSLCAG00010004155)	sufu (ENSLCAG00010004215) #9	trim8b (ENSLCAG00010004494) #8	npm3 (ENSLCAG00010004497) #28	oga (ENSLCAG00010004518) #27	ENSLCAG00010004572 #21	ldb1a (ENSLCAG00010004598) #22	ENSLCAG00010004626	HPS6 (ENSLCAG00010004630)	KCNIP2 (ENSLCAG00010004633) #26	cox15 (ENSLCAG00010004645)	cutc (ENSLCAG00010004655)	ENSLCAG00010004966	ENSLCAG00010006931	ARHGAP19 (ENSLCAG00010006934)	slit1a (ENSLCAG00010007019)
Seriola	ANCESTRAL SPECIES	14	ENSGT00940000155133.a.a.a	ENSGT00940000161964.g.a	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000157798.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a
Yellowtail amberjack	MODERN SPECIES	2817			GDF10 (ENSSLDG00000003317)	prdm8 (ENSSLDG00000003283)	ENSSLDG00000003200	rrp12 (ENSSLDG00000003038)	UBTD1 (ENSSLDG00000002996)	zdhhc16a (ENSSLDG00000002945)	mettl18 (ENSSLDG00000002930)	sufu (ENSSLDG00000002861) #9	trim8b (ENSSLDG00000002825) #8	npm3 (ENSSLDG00000002811) #28	oga (ENSSLDG00000002740) #27	ENSSLDG00000002659 #21	ENSSLDG00000002650	ldb1a (ENSSLDG00000002597) #22	ENSSLDG00000002523	HPS6 (ENSSLDG00000002489)	KCNIP2 (ENSSLDG00000002465) #26	cox15 (ENSSLDG00000002425)	cutc (ENSSLDG00000002385)	ENSSLDG00000001830	ENSSLDG00000001789	ARHGAP19 (ENSSLDG00000001776)	slit1a (ENSSLDG00000001577)
Greater amberjack	MODERN SPECIES	9	ENSSDUG00000022950	ENSSDUG00000022948	ENSSDUG00000022946	GDF10 (ENSSDUG00000022905)	prdm8 (ENSSDUG00000022899)	ENSSDUG00000022893	rrp12 (ENSSDUG00000022871)	UBTD1 (ENSSDUG00000022864)	zdhhc16a (ENSSDUG00000022858)	mettl18 (ENSSDUG00000022855)	sufu (ENSSDUG00000022849) #9	trim8b (ENSSDUG00000022847) #8	npm3 (ENSSDUG00000022843) #28	oga (ENSSDUG00000022812) #27	PPRC1 (ENSSDUG00000022798) #21	ldb1a (ENSSDUG00000022789) #22	ENSSDUG00000022775	HPS6 (ENSSDUG00000022772)	KCNIP2 (ENSSDUG00000022763) #26	cox15 (ENSSDUG00000022758)	cutc (ENSSDUG00000022744)	ENSSDUG00000022658	ENSSDUG00000022646	ARHGAP19 (ENSSDUG00000022644)	slit1a (ENSSDUG00000022626)
Eupercaria	ANCESTRAL SPECIES	15	ENSGT00940000161964.g.a	ENSGT00940000177496	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000157798.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00730000111173.g	ENSGT00940000153956.b	ENSGT00940000165889	ENSGT00390000015298
Tetraodontidae	ANCESTRAL SPECIES	7	ENSGT00950000183015.B.a.b	ENSGT00940000153692.B.b	ENSGT00940000161964.g.a	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000157798.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00940000168493	ENSGT00730000111173.g	ENSGT00940000165889	ENSGT00390000015298
Tetraodon	MODERN SPECIES	26	ENSTNIG00000004021	ENSTNIG00000004020	ENSTNIG00000004019	exosc6 (ENSTNIG00000004018)	ENSTNIG00000004017	aars1 (ENSTNIG00000004016)	st3gal2 (ENSTNIG00000004015)	ENSTNIG00000004014	ENSTNIG00000004009	marchf5 (ENSTNIG00000004006)	lamtor2 (ENSTNIG00000004005)	ENSTNIG00000004004	ENSTNIG00000004001	ENSTNIG00000004000	ENSTNIG00000003999	ldb1a (ENSTNIG00000003998) #22	ENSTNIG00000003997	tfap2d (ENSTNIG00000003995)	MAST2 (ENSTNIG00000003994)	ENSTNIG00000003993	mmd2a (ENSTNIG00000003992)	ap5z1 (ENSTNIG00000003991)	ENSTNIG00000003990	SDS (ENSTNIG00000003987)	ENSTNIG00000003980	ENSTNIG00000003979	YTHDF1 (ENSTNIG00000003975)	birc7 (ENSTNIG00000003974)	ENSTNIG00000003968	ENSTNIG00000003967	siah1 (ENSTNIG00000003964)
Fugu	MODERN SPECIES	16	ENSTRUG00000013138	mapk8a (ENSTRUG00000020438)	ENSTRUG00000023086	ENSTRUG00000021332	GDF10 (ENSTRUG00000020275)	prdm8 (ENSTRUG00000012560)	ENSTRUG00000012343	rrp12 (ENSTRUG00000012017)	UBTD1 (ENSTRUG00000026568)	zdhhc16a (ENSTRUG00000011854)	mettl18 (ENSTRUG00000019556)	sufu (ENSTRUG00000011691) #9	npm3 (ENSTRUG00000011661) #28	oga (ENSTRUG00000011539) #27	ENSTRUG00000011524 #21	ldb1a (ENSTRUG00000011293) #22	ENSTRUG00000010721	HPS6 (ENSTRUG00000010666)	ENSTRUG00000028008	KCNIP2 (ENSTRUG00000025958) #26	cox15 (ENSTRUG00000024846)	cutc (ENSTRUG00000010646)	abcc2 (ENSTRUG00000009329)	ENSTRUG00000024980	ARHGAP19 (ENSTRUG00000009178)	slit1a (ENSTRUG00000008791)	ENSTRUG00000008704	ENSTRUG00000032843	ENSTRUG00000030291	hps1 (ENSTRUG00000008073)	HPSE2 (ENSTRUG00000007806)
Eupecaria_A	ANCESTRAL SPECIES	1	ENSGT00940000161964.g.a	ENSGT00940000177496	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000157798.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00730000111173.g	ENSGT00940000153956.b	ENSGT00940000165889	ENSGT00390000015298
Ballan wrasse	MODERN SPECIES	188	ENSLBEG00000015165	ENSLBEG00000015187	ENSLBEG00000015204	GDF10 (ENSLBEG00000015223)	prdm8 (ENSLBEG00000015250)	ENSLBEG00000015273	rrp12 (ENSLBEG00000015335)	UBTD1 (ENSLBEG00000015440)	zdhhc16a (ENSLBEG00000015478)	mettl18 (ENSLBEG00000015515)	sufu (ENSLBEG00000015556) #9	TRIM8 (ENSLBEG00000015619) #8	npm3 (ENSLBEG00000015651) #28	oga (ENSLBEG00000015732) #27	ENSLBEG00000015862 #21	ldb1a (ENSLBEG00000015943) #22	ENSLBEG00000016011	HPS6 (ENSLBEG00000016063)	KCNIP2 (ENSLBEG00000016123) #26	cox15 (ENSLBEG00000016198)	cutc (ENSLBEG00000016234)	ENSLBEG00000016375	ENSLBEG00000016904	ENSLBEG00000016932	ARHGAP19 (ENSLBEG00000016970)
Eupecaria_B	ANCESTRAL SPECIES	3	ENSGT00940000161964.g.a	ENSGT00940000177496	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000157798.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00730000111173.g	ENSGT00940000153956.b	ENSGT00940000165889	ENSGT00390000015298
Perciformes	ANCESTRAL SPECIES	17	ENSGT00940000161964.g.a	ENSGT00940000177496	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000157798.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00730000111173.g	ENSGT00940000153956.b	ENSGT00940000165889	ENSGT00390000015298
Perciformes_a	ANCESTRAL SPECIES	16	ENSGT00940000153692.B.b	ENSGT00940000161964.g.a	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000157798.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00730000111173.g	ENSGT00940000153956.b	ENSGT00940000165889	ENSGT00390000015298
Pike perch	MODERN SPECIES	10	mapk8a (ENSSLUG00000005358)	ENSSLUG00000007114	ENSSLUG00000007151	GDF10 (ENSSLUG00000007176)	prdm8 (ENSSLUG00000007210)	ENSSLUG00000007222	rrp12 (ENSSLUG00000007266)	UBTD1 (ENSSLUG00000007390)	zdhhc16a (ENSSLUG00000007404)	mettl18 (ENSSLUG00000007450)	sufu (ENSSLUG00000007454) #9	trim8b (ENSSLUG00000007465) #8	npm3 (ENSSLUG00000007469) #28	oga (ENSSLUG00000007510) #27	PPRC1 (ENSSLUG00000007667) #21	ldb1a (ENSSLUG00000007739) #22	ENSSLUG00000008581	HPS6 (ENSSLUG00000008608)	KCNIP2 (ENSSLUG00000008653) #26	cox15 (ENSSLUG00000008671)	cutc (ENSSLUG00000008760)	ENSSLUG00000009434	ENSSLUG00000020904	ARHGAP19 (ENSSLUG00000020919)	slit1a (ENSSLUG00000021011)	ENSSLUG00000021178	ENSSLUG00000021182	morn4 (ENSSLUG00000021185)	ENSSLUG00000021193	st3gal7 (ENSSLUG00000021200)	hps1 (ENSSLUG00000021216)
Channel bull blenny	MODERN SPECIES	6	mapk8a (ENSCGOG00000007640)	FRMPD2 (ENSCGOG00000007898)	ENSCGOG00000007914	GDF10 (ENSCGOG00000007917)	prdm8 (ENSCGOG00000007920)	ENSCGOG00000007929	rrp12 (ENSCGOG00000008345)	UBTD1 (ENSCGOG00000009955)	zdhhc16a (ENSCGOG00000009964)	mettl18 (ENSCGOG00000010071)	sufu (ENSCGOG00000010078) #9	trim8b (ENSCGOG00000010290) #8	npm3 (ENSCGOG00000010294) #28	oga (ENSCGOG00000010348) #27	PPRC1 (ENSCGOG00000011854) #21	ldb1a (ENSCGOG00000011868) #22	ENSCGOG00000012035	HPS6 (ENSCGOG00000012055)	KCNIP2 (ENSCGOG00000012066) #26	cox15 (ENSCGOG00000012179)	cutc (ENSCGOG00000012293)	ENSCGOG00000012388	ENSCGOG00000012557	ARHGAP19 (ENSCGOG00000012563)	slit1a (ENSCGOG00000012624)	ENSCGOG00000014769	ENSCGOG00000014770	ENSCGOG00000014773	ENSCGOG00000014776	ANKRD2 (ENSCGOG00000014778)	st3gal7 (ENSCGOG00000014779)
Cottioidei	ANCESTRAL SPECIES	17	ENSGT00940000161964.g.a	ENSGT00940000177496	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000157798.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00940000162611.b	ENSGT00940000168493	ENSGT00940000153956.b	ENSGT00940000165889
Stickleback	MODERN SPECIES	6	mapk8a (ENSGACG00000007039)	FRMPD2 (ENSGACG00000007110)	ENSGACG00000007126	GDF10 (ENSGACG00000007139)	prdm8 (ENSGACG00000007142)	ENSGACG00000007150	rrp12 (ENSGACG00000007175)	UBTD1 (ENSGACG00000007189)	zdhhc16a (ENSGACG00000007213)	mettl18 (ENSGACG00000007255)	sufu (ENSGACG00000007257) #9	trim8b (ENSGACG00000007285) #8	npm3 (ENSGACG00000007294) #28	oga (ENSGACG00000007296) #27	ENSGACG00000007308 #21	ldb1a (ENSGACG00000007317) #22	ENSGACG00000007331	HPS6 (ENSGACG00000007363)	KCNIP2 (ENSGACG00000007366) #26	cox15 (ENSGACG00000007381)	cutc (ENSGACG00000007400)	ENSGACG00000007419	ARHGAP19 (ENSGACG00000007432)	slit1a (ENSGACG00000007441)	ENSGACG00000007469	ENSGACG00000007479	st3gal7 (ENSGACG00000007489)	hps1 (ENSGACG00000007506)	HPSE2 (ENSGACG00000007523)	CNNM1 (ENSGACG00000007529)	got1 (ENSGACG00000007534)
Lumpfish	MODERN SPECIES	6	FRMPD2 (ENSCLMG00005003679)	ENSCLMG00005003680	ENSCLMG00005003682	GDF10 (ENSCLMG00005003684)	prdm8 (ENSCLMG00005003686)	ENSCLMG00005003692	rrp12 (ENSCLMG00005005035)	UBTD1 (ENSCLMG00005005116)	zdhhc16a (ENSCLMG00005005120)	mettl18 (ENSCLMG00005005129)	sufu (ENSCLMG00005005134) #9	TRIM8 (ENSCLMG00005005137) #8	npm3 (ENSCLMG00005005148) #28	oga (ENSCLMG00005005155) #27	ENSCLMG00005005211 #21	ldb1a (ENSCLMG00005005221) #22	ENSCLMG00005005930	HPS6 (ENSCLMG00005005933)	KCNIP2 (ENSCLMG00005005938) #26	cox15 (ENSCLMG00005005940)	cutc (ENSCLMG00005005944)	ENSCLMG00005005991	ENSCLMG00005011087	ARHGAP19 (ENSCLMG00005011089)	slit1a (ENSCLMG00005011125)	ENSCLMG00005013363	ENSCLMG00005013364	ENSCLMG00005013366	ENSCLMG00005013368	ENSCLMG00005013370	st3gal7 (ENSCLMG00005013372)
Eupecaria_C	ANCESTRAL SPECIES	1	ENSGT00940000155133.a.a.a	ENSGT00940000161964.g.a	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000157798.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00940000162611.b	ENSGT00940000168493	ENSGT00730000111173.g	ENSGT00940000153956.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	1	ENSGT00940000155133.a.a.a	ENSGT00940000161964.g.a	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000157798.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00730000111173.g	ENSGT00940000153956.b	ENSGT00940000165889	ENSGT00390000015298
European seabass	MODERN SPECIES	1	ARHGAP22 (ENSDLAG00005001721)	mapk8a (ENSDLAG00005001847)	ENSDLAG00005005997	ENSDLAG00005006115	prdm8 (ENSDLAG00005031708)	ENSDLAG00005006183	rrp12 (ENSDLAG00005006276)	ENSDLAG00005029022	zdhhc16a (ENSDLAG00005007162)	mettl18 (ENSDLAG00005030824)	sufu (ENSDLAG00005007287) #9	ENSDLAG00005007332 #8	npm3 (ENSDLAG00005026353) #28	oga (ENSDLAG00005007394) #27	PPRC1 (ENSDLAG00005009123) #21	ENSDLAG00005009139 #22	ENSDLAG00005009332	HPS6 (ENSDLAG00005026518)	ENSDLAG00005009376 #26	ENSDLAG00005009452	ENSDLAG00005009461	ENSDLAG00005009623	ARHGAP19 (ENSDLAG00005010615)	ENSDLAG00005010818	ENSDLAG00005028742	ENSDLAG00005033715	morn4 (ENSDLAG00005033230)	ENSDLAG00005013417	st3gal7 (ENSDLAG00005013432)	hps1 (ENSDLAG00005013448)	HPSE2 (ENSDLAG00005013466)
Large yellow croaker	MODERN SPECIES	2	ENSLCRG00005019078	ENSLCRG00005019079	ENSLCRG00005019081	GDF10 (ENSLCRG00005019082)	prdm8 (ENSLCRG00005019084)	ENSLCRG00005019085	rrp12 (ENSLCRG00005019096)	UBTD1 (ENSLCRG00005019113)	zdhhc16a (ENSLCRG00005019116)	mettl18 (ENSLCRG00005019132)	sufu (ENSLCRG00005019134) #9	TRIM8 (ENSLCRG00005019242) #8	ENSLCRG00005019244	oga (ENSLCRG00005019260) #27	PPRC1 (ENSLCRG00005020358) #21	ldb1a (ENSLCRG00005000119) #22	ENSLCRG00005000151	HPS6 (ENSLCRG00005000178)	ENSLCRG00005000182	ENSLCRG00005000187	KCNIP2 (ENSLCRG00005000223) #26	cox15 (ENSLCRG00005000306)	cutc (ENSLCRG00005000471)	ENSLCRG00005000488	ENSLCRG00005004016	ARHGAP19 (ENSLCRG00005004020)	slit1a (ENSLCRG00005004050)	ENSLCRG00005010311	ENSLCRG00005010312	ENSLCRG00005010313	ANKRD2 (ENSLCRG00005010315)
Gilthead seabream	MODERN SPECIES	6	mapk8a (ENSSAUG00010025199)	ENSSAUG00010025188	ENSSAUG00010025181	GDF10 (ENSSAUG00010025180)	prdm8 (ENSSAUG00010025179)	ENSSAUG00010025178	rrp12 (ENSSAUG00010025135)	UBTD1 (ENSSAUG00010025129)	zdhhc16a (ENSSAUG00010025126)	mettl18 (ENSSAUG00010025122)	sufu (ENSSAUG00010025117) #9	trim8b (ENSSAUG00010025115) #8	npm3 (ENSSAUG00010025114) #28	oga (ENSSAUG00010024863) #27	ENSSAUG00010024852 #21	ldb1a (ENSSAUG00010024808) #22	ENSSAUG00010024785	KCNIP2 (ENSSAUG00010024751) #26	cox15 (ENSSAUG00010024736)	cutc (ENSSAUG00010024734)	ENSSAUG00010020216	ENSSAUG00010020066	ARHGAP19 (ENSSAUG00010020061)	slit1a (ENSSAUG00010013534)	ENSSAUG00010013456	ENSSAUG00010013452	ENSSAUG00010013450	ENSSAUG00010013448	ANKRD2 (ENSSAUG00010013445)	st3gal7 (ENSSAUG00010013443)	hps1 (ENSSAUG00010013439)
Ovalentaria	ANCESTRAL SPECIES	18	ENSGT00940000161964.g.a	ENSGT00940000177496	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000157798.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00940000168493	ENSGT00940000175336.a	ENSGT00940000162611.a.b	ENSGT00730000111173.g
Ovalentaria_B	ANCESTRAL SPECIES	7	ENSGT00940000161964.g.a	ENSGT00940000177496	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000157798.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00730000111173.g	ENSGT00940000153956.b	ENSGT00940000165889	ENSGT00390000015298
Pomacentridae	ANCESTRAL SPECIES	9	ENSGT00940000155133.a.a.a	ENSGT00940000161964.g.a	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000157798.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000170319	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00730000111173.g	ENSGT00940000153956.b	ENSGT00940000165889
Pomacentridae_A	ANCESTRAL SPECIES	7	ENSGT00940000155133.a.a.a	ENSGT00940000161964.g.a	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000157798.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00730000111173.g	ENSGT00940000153956.b	ENSGT00940000165889	ENSGT00390000015298
Amphiprion	ANCESTRAL SPECIES	13	ENSGT00940000155133.a.a.a	ENSGT00940000161964.g.a	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000157798.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00730000111173.g	ENSGT00940000153956.b	ENSGT00940000165889	ENSGT00390000015298
Clown anemonefish	MODERN SPECIES	1768													npm3 (ENSAOCG00000009376) #28	oga (ENSAOCG00000009445) #27	PPRC1 (ENSAOCG00000009477) #21	ldb1a (ENSAOCG00000009518) #22	ENSAOCG00000009604	HPS6 (ENSAOCG00000009631)
Orange clownfish	MODERN SPECIES	12	ENSAPEG00000016573	ENSAPEG00000016532	ENSAPEG00000016438	GDF10 (ENSAPEG00000016236)	prdm8 (ENSAPEG00000016199)	ENSAPEG00000016137	rrp12 (ENSAPEG00000016023)	UBTD1 (ENSAPEG00000016006)	zdhhc16a (ENSAPEG00000015967)	mettl18 (ENSAPEG00000015947)	sufu (ENSAPEG00000015906) #9	trim8b (ENSAPEG00000015873) #8	npm3 (ENSAPEG00000015863) #28	oga (ENSAPEG00000015752) #27	PPRC1 (ENSAPEG00000015720) #21	ldb1a (ENSAPEG00000015676) #22	ENSAPEG00000015571	HPS6 (ENSAPEG00000015323)	ENSAPEG00000015270	KCNIP2 (ENSAPEG00000015223) #26	cox15 (ENSAPEG00000015197)	cutc (ENSAPEG00000015138)	ENSAPEG00000014998	ENSAPEG00000014964	ARHGAP19 (ENSAPEG00000014919)	slit1a (ENSAPEG00000014782)	ENSAPEG00000014749	ENSAPEG00000014735	morn4 (ENSAPEG00000014710)	ANKRD2 (ENSAPEG00000014682)	st3gal7 (ENSAPEG00000014662)
Spiny chromis	MODERN SPECIES	664	ARHGAP22 (ENSAPOG00000013562)	mapk8a (ENSAPOG00000013538)	ENSAPOG00000013474	GDF10 (ENSAPOG00000013444)	prdm8 (ENSAPOG00000013427)	ENSAPOG00000013398	rrp12 (ENSAPOG00000013355)	UBTD1 (ENSAPOG00000013234)	zdhhc16a (ENSAPOG00000013211)	mettl18 (ENSAPOG00000013195)	sufu (ENSAPOG00000013163) #9	trim8b (ENSAPOG00000013110) #8	npm3 (ENSAPOG00000013083) #28	oga (ENSAPOG00000013055) #27	PPRC1 (ENSAPOG00000012945) #21	ldb1a (ENSAPOG00000012926) #22	ENSAPOG00000012853	HPS6 (ENSAPOG00000012710)
Bicolor damselfish	MODERN SPECIES	506				GDF10 (ENSSPAG00000002133)	prdm8 (ENSSPAG00000002141)	ENSSPAG00000002164	rrp12 (ENSSPAG00000002261)	UBTD1 (ENSSPAG00000002401)	zdhhc16a (ENSSPAG00000002435)	mettl18 (ENSSPAG00000002457)	sufu (ENSSPAG00000002465) #9	trim8b (ENSSPAG00000002524) #8	npm3 (ENSSPAG00000002553) #28	oga (ENSSPAG00000002576) #27	PPRC1 (ENSSPAG00000002730) #21	ldb1a (ENSSPAG00000002783) #22	ENSSPAG00000002848	HPS6 (ENSSPAG00000002897)	KCNIP2 (ENSSPAG00000002912) #26	cox15 (ENSSPAG00000002944)	cutc (ENSSPAG00000002969)	ENSSPAG00000003056	ENSSPAG00000003573	ARHGAP19 (ENSSPAG00000003614)	slit1a (ENSSPAG00000003635)
Cichlidae	ANCESTRAL SPECIES	13	ENSGT00940000161964.g.a	ENSGT00940000177496	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000157798.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00730000111173.g	ENSGT00940000153956.b	ENSGT00940000165889	ENSGT00390000015298
Pseudocrenilabrinae	ANCESTRAL SPECIES	16	ENSGT00940000161964.g.a	ENSGT00940000177496	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000157798.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383.g	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00730000111173.g	ENSGT00940000153956.b	ENSGT00940000165889	ENSGT00390000015298
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	11	ENSGT00940000161964.g.a	ENSGT00940000177496	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000157798.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383.g	ENSGT00940000179277	ENSGT00940000164383.h	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00730000111173.g	ENSGT00940000153956.b	ENSGT00940000165889
Haplochromini	ANCESTRAL SPECIES	10	ENSGT00940000161964.g.a	ENSGT00940000177496	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000157798.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383.g	ENSGT00940000179277	ENSGT00940000164383.h.a	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00730000111173.g	ENSGT00940000153956.b.i.b	ENSGT00940000165889
Burton s mouthbrooder	MODERN SPECIES	563	mapk8a (ENSHBUG00000023155)	ENSHBUG00000023200	ENSHBUG00000023219	GDF10 (ENSHBUG00000023224)	prdm8 (ENSHBUG00000023232)	ENSHBUG00000023314	rrp12 (ENSHBUG00000023527)	UBTD1 (ENSHBUG00000023561)	zdhhc16a (ENSHBUG00000023632)	mettl18 (ENSHBUG00000023640)	sufu (ENSHBUG00000023662) #9	trim8b (ENSHBUG00000023691) #8	npm3 (ENSHBUG00000023704) #28	oga (ENSHBUG00000023813) #27	PPRC1 (ENSHBUG00000001258) #21	ldb1a (ENSHBUG00000001260) #22	ENSHBUG00000001265	HPS6 (ENSHBUG00000001268)	KCNIP2 (ENSHBUG00000001271) #26	cox15 (ENSHBUG00000001276)	cutc (ENSHBUG00000001280)	ENSHBUG00000001288
Haplochromini_A	ANCESTRAL SPECIES	8	ENSGT00940000161964.g.a	ENSGT00940000177496	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000157798.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383.g	ENSGT00940000179277	ENSGT00940000164383.h.a	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00730000111173.g	ENSGT00940000153956.b.i.b	ENSGT00940000165889
Haplochromini_B	ANCESTRAL SPECIES	5	ENSGT00940000155133.a.a.a	ENSGT00940000161964.g.a	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000157798.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383.g	ENSGT00940000179277	ENSGT00940000164383.h.a	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00730000111173.g	ENSGT00940000153956.b.i.b	ENSGT00940000165889
Eastern happy	MODERN SPECIES	4	mapk8a (ENSACLG00000007086)	ENSACLG00000007113	PTPN20 (ENSACLG00000007121)	GDF10 (ENSACLG00000007168)	prdm8 (ENSACLG00000007306)	ENSACLG00000007316	rrp12 (ENSACLG00000007354)	UBTD1 (ENSACLG00000007438)	zdhhc16a (ENSACLG00000007453)	mettl18 (ENSACLG00000007587)	sufu (ENSACLG00000007598) #9	trim8b (ENSACLG00000007839) #8	npm3 (ENSACLG00000007854) #28	oga (ENSACLG00000007861) #27	PPRC1 (ENSACLG00000007927) #21	ldb1a (ENSACLG00000007986) #22	ENSACLG00000008025	HPS6 (ENSACLG00000008045)	KCNIP2 (ENSACLG00000008053) #26	ENSACLG00000008075	cox15 (ENSACLG00000008079)	cutc (ENSACLG00000008109)	ENSACLG00000008527	ENSACLG00000008876	ENSACLG00000008892	ENSACLG00000008907	ARHGAP19 (ENSACLG00000009372)	slit1a (ENSACLG00000009382)	ENSACLG00000009523	ENSACLG00000009527	morn4 (ENSACLG00000009540)
Zebra mbuna	MODERN SPECIES	1095	ENSMZEG00005003519	ENSMZEG00005003514	PTPN20 (ENSMZEG00005003474)	GDF10 (ENSMZEG00005003466)	prdm8 (ENSMZEG00005003448)	ENSMZEG00005003370	rrp12 (ENSMZEG00005003241)	UBTD1 (ENSMZEG00005003210)	zdhhc16a (ENSMZEG00005003164)	mettl18 (ENSMZEG00005003149)	sufu (ENSMZEG00005003123) #9	trim8b (ENSMZEG00005003100) #8	npm3 (ENSMZEG00005003091) #28	oga (ENSMZEG00005003028) #27	PPRC1 (ENSMZEG00005002989) #21	ldb1a (ENSMZEG00005002942) #22	ENSMZEG00005002922	HPS6 (ENSMZEG00005002905)	KCNIP2 (ENSMZEG00005002882) #26	cox15 (ENSMZEG00005001138)	cutc (ENSMZEG00005001116)	ENSMZEG00005001014	ENSMZEG00005000888	cox15 (ENSMZEG00005000858)	cutc (ENSMZEG00005000833)	ENSMZEG00005000717	ENSMZEG00005000570	ENSMZEG00005000431	ARHGAP19 (ENSMZEG00005000419)	slit1a (ENSMZEG00005000186)	ENSMZEG00005000159
P. nyererei	MODERN SPECIES	431	ENSPNYG00000009787	ENSPNYG00000009771	PTPN20 (ENSPNYG00000009743)	GDF10 (ENSPNYG00000009629)	prdm8 (ENSPNYG00000009599)	ENSPNYG00000009556	rrp12 (ENSPNYG00000009451)	UBTD1 (ENSPNYG00000009419)	zdhhc16a (ENSPNYG00000009396)	mettl18 (ENSPNYG00000009382)	sufu (ENSPNYG00000009339) #9	trim8b (ENSPNYG00000009313) #8	npm3 (ENSPNYG00000009300) #28	oga (ENSPNYG00000009238) #27	ENSPNYG00000009171 #21	ldb1a (ENSPNYG00000009135) #22	ENSPNYG00000009074	HPS6 (ENSPNYG00000009048)	KCNIP2 (ENSPNYG00000009028) #26	cox15 (ENSPNYG00000009012)	cutc (ENSPNYG00000008909)	ENSPNYG00000008805	ENSPNYG00000008765	ARHGAP19 (ENSPNYG00000008747)	slit1a (ENSPNYG00000008647)	ENSPNYG00000008611	ENSPNYG00000008602	morn4 (ENSPNYG00000008589)	ENSPNYG00000008397	st3gal7 (ENSPNYG00000008303)	hps1 (ENSPNYG00000008230)
Lyretail cichlid	MODERN SPECIES	498	ENSNBRG00000010277	ENSNBRG00000010262	PTPN20 (ENSNBRG00000010240)	GDF10 (ENSNBRG00000010127)	prdm8 (ENSNBRG00000010100)	ENSNBRG00000010059	rrp12 (ENSNBRG00000009987)	UBTD1 (ENSNBRG00000009961)	zdhhc16a (ENSNBRG00000009937)	mettl18 (ENSNBRG00000009927)	sufu (ENSNBRG00000009709) #9	trim8b (ENSNBRG00000009652) #8	npm3 (ENSNBRG00000009627) #28	oga (ENSNBRG00000009577) #27	ENSNBRG00000009545	ldb1a (ENSNBRG00000009514) #22	ENSNBRG00000009452	HPS6 (ENSNBRG00000009421)	KCNIP2 (ENSNBRG00000009383) #26	cox15 (ENSNBRG00000009349)	cutc (ENSNBRG00000009309)
Nile tilapia	MODERN SPECIES	4	mapk8a (ENSONIG00000009562)	ENSONIG00000042798	ENSONIG00000036892	GDF10 (ENSONIG00000009553)	prdm8 (ENSONIG00000009552)	ENSONIG00000009537	rrp12 (ENSONIG00000009528)	UBTD1 (ENSONIG00000009526)	zdhhc16a (ENSONIG00000009525)	mettl18 (ENSONIG00000028128)	sufu (ENSONIG00000009519) #9	trim8b (ENSONIG00000009517) #8	npm3 (ENSONIG00000009513) #28	oga (ENSONIG00000009510) #27	PPRC1 (ENSONIG00000009509) #21	ldb1a (ENSONIG00000009506) #22	ENSONIG00000009499	HPS6 (ENSONIG00000032015)	KCNIP2 (ENSONIG00000009494) #26	cox15 (ENSONIG00000009492)	cutc (ENSONIG00000009490)	ENSONIG00000028031	ENSONIG00000030255	ENSONIG00000030995	ENSONIG00000018323	ARHGAP19 (ENSONIG00000018324)	slit1a (ENSONIG00000018325)	ENSONIG00000039949	ENSONIG00000018331	ENSONIG00000030690	morn4 (ENSONIG00000018332)
Midas cichlid	MODERN SPECIES	452	ENSACIG00000022898	ENSACIG00000022878	GDF10 (ENSACIG00000022741)	prdm8 (ENSACIG00000022723)	ENSACIG00000022707	rrp12 (ENSACIG00000022673)	UBTD1 (ENSACIG00000022663)	zdhhc16a (ENSACIG00000022648)	mettl18 (ENSACIG00000022638)	sufu (ENSACIG00000022620) #9	TRIM8 (ENSACIG00000022611) #8	npm3 (ENSACIG00000022586) #28	oga (ENSACIG00000022563) #27	ENSACIG00000022532 #21	ENSACIG00000022522	ldb1a (ENSACIG00000022512) #22	ENSACIG00000022488	HPS6 (ENSACIG00000022484)	KCNIP2 (ENSACIG00000022478) #26	cox15 (ENSACIG00000022369)	cutc (ENSACIG00000022346)	ENSACIG00000022277	ENSACIG00000022241	ENSACIG00000022233	ARHGAP19 (ENSACIG00000022216)	slit1a (ENSACIG00000022168)	ENSACIG00000022157	ENSACIG00000022148	ENSACIG00000022140	ENSACIG00000022013	st3gal7 (ENSACIG00000021971)
Atherinomorphae	ANCESTRAL SPECIES	16	ENSGT00940000161964.g.a	ENSGT00940000177496	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000157798.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00940000175336.a	ENSGT00940000162611.a.b	ENSGT00730000111173.g	ENSGT00940000165889
Oryzias	ANCESTRAL SPECIES	6	ENSGT00940000155133.a.a.a	ENSGT00940000161964.g.a	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000157798.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383.d	ENSGT00940000164383.c	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00940000162611.b	ENSGT00940000162611.a.b	ENSGT00730000111173.g
Oryzias_b	ANCESTRAL SPECIES	7	ENSGT00940000153692.B.b	ENSGT00940000161964.g.a	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000157798.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383.d	ENSGT00940000164383.c	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00940000162611.b	ENSGT00940000162611.a.b	ENSGT00730000111173.g
Javanese ricefish	MODERN SPECIES	6	FRMPD2 (ENSOJAG00000002021)	ENSOJAG00000001992	ENSOJAG00000001952	GDF10 (ENSOJAG00000019679)	prdm8 (ENSOJAG00000019676)	ENSOJAG00000019644	rrp12 (ENSOJAG00000019151)	UBTD1 (ENSOJAG00000019131)	zdhhc16a (ENSOJAG00000019061)	mettl18 (ENSOJAG00000019048)	sufu (ENSOJAG00000018944) #9	trim8b (ENSOJAG00000018927) #8	npm3 (ENSOJAG00000018880) #28	oga (ENSOJAG00000018707) #27	ENSOJAG00000018650 #21	ldb1a (ENSOJAG00000018436) #22	ENSOJAG00000018353	KCNIP2 (ENSOJAG00000018151) #26	cox15 (ENSOJAG00000018054)	cutc (ENSOJAG00000017954)	ENSOJAG00000016036	ENSOJAG00000014772	ENSOJAG00000014655	ARHGAP19 (ENSOJAG00000014586)	slit1a (ENSOJAG00000014244)	ENSOJAG00000014226	ENSOJAG00000014178	ENSOJAG00000014149	morn4 (ENSOJAG00000014128)	st3gal7 (ENSOJAG00000014117)	hps1 (ENSOJAG00000014107)
Indian medaka	MODERN SPECIES	27	ENSOMEG00000000044	ENSOMEG00000002495	ENSOMEG00000002507	GDF10 (ENSOMEG00000002534)	prdm8 (ENSOMEG00000002557)	ENSOMEG00000002575	rrp12 (ENSOMEG00000002609)	UBTD1 (ENSOMEG00000002620)	zdhhc16a (ENSOMEG00000002631)	mettl18 (ENSOMEG00000000050)	sufu (ENSOMEG00000002651) #9	trim8b (ENSOMEG00000002659) #8	npm3 (ENSOMEG00000002666) #28	oga (ENSOMEG00000002700) #27	ENSOMEG00000002727 #21	ldb1a (ENSOMEG00000002757) #22	ENSOMEG00000002780	HPS6 (ENSOMEG00000000730)	KCNIP2 (ENSOMEG00000002878) #26	cox15 (ENSOMEG00000002912)	cutc (ENSOMEG00000002943)	ENSOMEG00000002962	ENSOMEG00000003010	ENSOMEG00000003032	ARHGAP19 (ENSOMEG00000003047)	slit1a (ENSOMEG00000003088)	ENSOMEG00000003116	morn4 (ENSOMEG00000003130)	st3gal7 (ENSOMEG00000003156)	hps1 (ENSOMEG00000003177)	HPSE2 (ENSOMEG00000003198)
Oryzias_a	ANCESTRAL SPECIES	4	ENSGT00940000155133.a.a.a	ENSGT00940000161964.g.a	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000157798.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383.d	ENSGT00940000164383.c	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00730000111173.g	ENSGT00940000165889	ENSGT00390000015298
Chinese medaka	MODERN SPECIES	1045	ARHGAP22 (ENSOSIG00000014979)	mapk8a (ENSOSIG00000015169)	ENSOSIG00000015180	GDF10 (ENSOSIG00000015181)	prdm8 (ENSOSIG00000015184)	ENSOSIG00000015186	rrp12 (ENSOSIG00000015193)	ubtd1b (ENSOSIG00000015202)	zdhhc16a (ENSOSIG00000015206)	mettl18 (ENSOSIG00000000773)	sufu (ENSOSIG00000000824) #9	trim8b (ENSOSIG00000001068) #8	npm3 (ENSOSIG00000001071) #28	oga (ENSOSIG00000001084) #27	ENSOSIG00000001148 #21	ldb1a (ENSOSIG00000001164) #22	HPS6 (ENSOSIG00000004467)	KCNIP2 (ENSOSIG00000004478) #26	cox15 (ENSOSIG00000004524)	cutc (ENSOSIG00000004542)	ARHGAP19 (ENSOSIG00000004547)	ENSOSIG00000004587	ENSOSIG00000004705	ENSOSIG00000016148	ENSOSIG00000016150
Japanese Medaka HdrR	MODERN SPECIES	6	ENSORLG00000030163	ENSORLG00000027791	ENSORLG00000029377	ENSORLG00000008754	prdm8 (ENSORLG00000008745)	ENSORLG00000008734	rrp12 (ENSORLG00000008688)	zdhhc16a (ENSORLG00000008594)	mettl18 (ENSORLG00000026116)	sufu (ENSORLG00000008547) #9	ENSORLG00000008513 #8	ENSORLG00000029329	npm3 (ENSORLG00000008492) #28	oga (ENSORLG00000008478) #27	ENSORLG00000008410 #21	ldb1a (ENSORLG00000008393) #22	ENSORLG00000008367	HPS6 (ENSORLG00000008323)	KCNIP2 (ENSORLG00000008321) #26	cox15 (ENSORLG00000008304)	cutc (ENSORLG00000008290)	ENSORLG00000008249	ENSORLG00000027419	ENSORLG00000030131	ENSORLG00000007936	slit1a (ENSORLG00000007918)	ENSORLG00000030348	morn4 (ENSORLG00000023611)	st3gal7 (ENSORLG00000007799)	hps1 (ENSORLG00000007785)	HPSE2 (ENSORLG00000028285)
Cyprinodontiformes	ANCESTRAL SPECIES	17	ENSGT00940000161964.g.a	ENSGT00940000177496	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000157798.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00940000175336.a	ENSGT00940000162611.a.b	ENSGT00730000111173.g	ENSGT00940000165889
Aplocheiloidei	ANCESTRAL SPECIES	43	ENSGT00950000183015.B.a.b	ENSGT00940000153692.B.b	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000157798.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT00940000180462	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00730000111173.g	ENSGT00940000165889	ENSGT00390000015298	ENSGT00390000004874.a.a
Mangrove rivulus	MODERN SPECIES	23	ARHGAP22 (ENSKMAG00000020359)	mapk8a (ENSKMAG00000020403)	ENSKMAG00000020485	GDF10 (ENSKMAG00000020532)	prdm8 (ENSKMAG00000020544)	ENSKMAG00000020559	rrp12 (ENSKMAG00000020621)	ubtd1b (ENSKMAG00000020713)	zdhhc16a (ENSKMAG00000020732)	mettl18 (ENSKMAG00000020752)	sufu (ENSKMAG00000020765) #9	trim8b (ENSKMAG00000020783) #8	npm3 (ENSKMAG00000020800) #28	oga (ENSKMAG00000020822) #27	ENSKMAG00000020881 #21	ldb1a (ENSKMAG00000020910) #22	ENSKMAG00000020937	HPS6 (ENSKMAG00000020955)	KCNIP2 (ENSKMAG00000020980) #26	cox15 (ENSKMAG00000021015)	cutc (ENSKMAG00000021035)	ENSKMAG00000021067	ENSKMAG00000021103	ARHGAP19 (ENSKMAG00000021113)	slit1a (ENSKMAG00000021147)	ENSKMAG00000021239	ENSKMAG00000021243	morn4 (ENSKMAG00000021255)	st3gal7 (ENSKMAG00000021261)	hps1 (ENSKMAG00000021266)	HPSE2 (ENSKMAG00000021280)
Turquoise killifish	MODERN SPECIES	1612	OLA.15628 (ENSNFUG00015003773)	UBTD1A (ENSNFUG00015003781)	zdhhc16a (ENSNFUG00015003790)	METTL18 (ENSNFUG00015003816)	sufu (ENSNFUG00015003826) #9	ENSNFUG00015003846	zgc:77056 (ENSNFUG00015003855)	TMEM42 (ENSNFUG00015003866)	zdhhc3a (ENSNFUG00015003872)	ENSNFUG00015003879	HEY1 (ENSNFUG00015003898)	Nfu_g_1_014507 (ENSNFUG00015003900) #8	NPM3 (ENSNFUG00015003902) #28	oga (ENSNFUG00015003994) #27	PPRC1 (ENSNFUG00015004319) #21	ldb1a (ENSNFUG00015004354) #22	PROM2 (ENSNFUG00015004404)	HPS6 (ENSNFUG00015004440)	mrps11 (ENSNFUG00015004444)	ENSNFUG00015004445	ENSNFUG00015004448	ENSNFUG00015004450	KCNIP2 (ENSNFUG00015004462) #26	ENSNFUG00015004481	ENSNFUG00015004484	cox15 (ENSNFUG00015004495)	cutc (ENSNFUG00015004545)	ABCC2 (ENSNFUG00015005526)	LCOR (ENSNFUG00015015325)	ARHGAP19 (ENSNFUG00015015367)	SLIT1A (ENSNFUG00015015720)
Cyprinodontoidei	ANCESTRAL SPECIES	14	ENSGT00940000161964.g.a	ENSGT00940000177496	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000157798.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383.a	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000164383.b	ENSGT00940000162611.a.b	ENSGT00730000111173.g	ENSGT00940000165889	ENSGT00390000015298	ENSGT00390000004874.a.a
Poeciliinae	ANCESTRAL SPECIES	16	ENSGT00940000161964.g.a	ENSGT00940000177496	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000157798.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383.a	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000164383.b	ENSGT00940000162611.a.b	ENSGT00730000111173.g	ENSGT00940000165889	ENSGT00390000015298	ENSGT00390000004874.a.a
Platyfish	MODERN SPECIES	14	ENSXMAG00000022984	ENSXMAG00000021918	PTPN20 (ENSXMAG00000028435)	GDF10 (ENSXMAG00000023202)	prdm8 (ENSXMAG00000024060)	ENSXMAG00000013542	rrp12 (ENSXMAG00000013498)	UBTD1 (ENSXMAG00000013492)	zdhhc16a (ENSXMAG00000013491)	mettl18 (ENSXMAG00000025311)	sufu (ENSXMAG00000013479) #9	trim8b (ENSXMAG00000013477) #8	npm3 (ENSXMAG00000013473) #28	oga (ENSXMAG00000013471) #27	ENSXMAG00000013470 #21	ldb1a (ENSXMAG00000029093) #22	ENSXMAG00000013456	HPS6 (ENSXMAG00000013454)	KCNIP2 (ENSXMAG00000013446) #26	cox15 (ENSXMAG00000013440)	cutc (ENSXMAG00000013437)	ENSXMAG00000013392	ENSXMAG00000024016	ARHGAP19 (ENSXMAG00000013379)	slit1a (ENSXMAG00000002408)	ENSXMAG00000002481	ENSXMAG00000002515	ENSXMAG00000021674	morn4 (ENSXMAG00000027912)	st3gal7 (ENSXMAG00000002526)	hps1 (ENSXMAG00000002534)
Poecilia	ANCESTRAL SPECIES	11	ENSGT00940000155133.a.a.a	ENSGT00940000161964.g.a	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000157798.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383.a	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000164383.b	ENSGT00940000162611.a.b	ENSGT00730000111173.g	ENSGT00940000165889	ENSGT00390000015298	ENSGT00390000004874.a.a
Guppy	MODERN SPECIES	445	ENSPREG00000021168	GDF10 (ENSPREG00000021065)	prdm8 (ENSPREG00000021025)	ENSPREG00000021007	ENSPREG00000020997	rrp12 (ENSPREG00000020950)	UBTD1 (ENSPREG00000020926)	zdhhc16a (ENSPREG00000020854)	mettl18 (ENSPREG00000020827)	sufu (ENSPREG00000020809) #9	trim8b (ENSPREG00000020792) #8	npm3 (ENSPREG00000020765) #28	oga (ENSPREG00000020743) #27	ENSPREG00000020657 #21	ENSPREG00000020632	ldb1a (ENSPREG00000020618) #22	ENSPREG00000020591	HPS6 (ENSPREG00000020576)	ENSPREG00000020571	KCNIP2 (ENSPREG00000020551) #26	cox15 (ENSPREG00000020424)	cutc (ENSPREG00000020392)	ENSPREG00000020351	ENSPREG00000020339	ARHGAP19 (ENSPREG00000020307)	slit1a (ENSPREG00000020253)	ENSPREG00000020066	ENSPREG00000020025	ENSPREG00000020012	ENSPREG00000020007	morn4 (ENSPREG00000019999)
NAME_6	ANCESTRAL SPECIES	25	ENSGT00950000183015.B.a.b	ENSGT00940000153692.B.b	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000157798.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383.a	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000164383.b	ENSGT00940000162611.a.b	ENSGT00730000111173.g	ENSGT00940000165889	ENSGT00390000015298	ENSGT00390000004874.a.a
Sailfin molly	MODERN SPECIES	1238					ENSPLAG00000009695	rrp12 (ENSPLAG00000009840)	UBTD1 (ENSPLAG00000009872)	zdhhc16a (ENSPLAG00000009883)	mettl18 (ENSPLAG00000009893)	sufu (ENSPLAG00000009904) #9	trim8b (ENSPLAG00000009935) #8	npm3 (ENSPLAG00000009956) #28	oga (ENSPLAG00000010044) #27	ENSPLAG00000010056 #21	ENSPLAG00000010066	ldb1a (ENSPLAG00000010096) #22
Amazon molly	MODERN SPECIES	555						ENSPFOG00000015372	rrp12 (ENSPFOG00000014975)	UBTD1 (ENSPFOG00000014923)	zdhhc16a (ENSPFOG00000014863)	mettl18 (ENSPFOG00000014853)	sufu (ENSPFOG00000014765) #9	trim8b (ENSPFOG00000014711) #8	npm3 (ENSPFOG00000014692) #28	oga (ENSPFOG00000014601) #27	ENSPFOG00000014566 #21	ldb1a (ENSPFOG00000014504) #22	ENSPFOG00000014261	HPS6 (ENSPFOG00000014237)	KCNIP2 (ENSPFOG00000014204) #26	cox15 (ENSPFOG00000014173)	ENSPFOG00000013938	ENSPFOG00000013897	ARHGAP19 (ENSPFOG00000013841)	slit1a (ENSPFOG00000013298)	ENSPFOG00000013051	ENSPFOG00000013017	morn4 (ENSPFOG00000013001)	st3gal7 (ENSPFOG00000012974)	hps1 (ENSPFOG00000012875)	HPSE2 (ENSPFOG00000012702)	CNNM1 (ENSPFOG00000012597)
NAME_4	ANCESTRAL SPECIES	2	ENSGT00940000161964.g.a	ENSGT00940000177496	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000157919.a.b #8	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546	ENSGT00940000157798.a #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383.a	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000164383.b	ENSGT00940000162611.a.b	ENSGT00730000111173.g	ENSGT00940000165889	ENSGT00390000015298	ENSGT00390000004874.a.a
Sheepshead minnow	MODERN SPECIES	269	mapk8a (ENSCVAG00000003581)	FRMPD2 (ENSCVAG00000003510)	ENSCVAG00000003467	GDF10 (ENSCVAG00000003461)	prdm8 (ENSCVAG00000003456)	ENSCVAG00000003451	rrp12 (ENSCVAG00000003418)	UBTD1 (ENSCVAG00000003395)	zdhhc16a (ENSCVAG00000003378)	mettl18 (ENSCVAG00000003348)	sufu (ENSCVAG00000003345) #9	TRIM8 (ENSCVAG00000003314) #8	npm3 (ENSCVAG00000003305) #28	oga (ENSCVAG00000003294) #27	ENSCVAG00000003223 #21	ldb1a (ENSCVAG00000000866) #22	ENSCVAG00000003168	HPS6 (ENSCVAG00000003146)	KCNIP2 (ENSCVAG00000000097) #26	cox15 (ENSCVAG00000003119)	cutc (ENSCVAG00000003082)	ENSCVAG00000003033	ENSCVAG00000002764	ARHGAP19 (ENSCVAG00000002758)	slit1a (ENSCVAG00000002747)	ENSCVAG00000002698	ENSCVAG00000002579	morn4 (ENSCVAG00000002571)	st3gal7 (ENSCVAG00000002567)	hps1 (ENSCVAG00000002560)
Mummichog	MODERN SPECIES	2448	ENSFHEG00000004437	GDF10 (ENSFHEG00000004405)	prdm8 (ENSFHEG00000004168)	ENSFHEG00000004164	rrp12 (ENSFHEG00000004148)	UBTD1 (ENSFHEG00000004070)	zdhhc16a (ENSFHEG00000004057)	mettl18 (ENSFHEG00000004032)	ENSFHEG00000004026	ENSFHEG00000004022 #9	trim8b (ENSFHEG00000004008) #8	npm3 (ENSFHEG00000003983) #28	oga (ENSFHEG00000003966) #27	ENSFHEG00000003893 #21	ENSFHEG00000003873	ldb1a (ENSFHEG00000003863) #22	ENSFHEG00000003816	HPS6 (ENSFHEG00000003801)	KCNIP2 (ENSFHEG00000003779) #26	cox15 (ENSFHEG00000003750)	cutc (ENSFHEG00000003722)	ENSFHEG00000003665	ENSFHEG00000003139	ARHGAP19 (ENSFHEG00000003120)	slit1a (ENSFHEG00000003102)	ENSFHEG00000002961	ENSFHEG00000000080	morn4 (ENSFHEG00000002479)	st3gal7 (ENSFHEG00000002456)	hps1 (ENSFHEG00000002446)	HPSE2 (ENSFHEG00000002433)
Tiger tail seahorse	MODERN SPECIES	108	mapk8a (ENSHCOG00000019799)	ENSHCOG00000019771	ENSHCOG00000019750	GDF10 (ENSHCOG00000019719)	prdm8 (ENSHCOG00000019585)	ENSHCOG00000019574	rrp12 (ENSHCOG00000019519)	UBTD1 (ENSHCOG00000019417)	zdhhc16a (ENSHCOG00000019398)	mettl18 (ENSHCOG00000019384)	sufu (ENSHCOG00000019381) #9	TRIM8 (ENSHCOG00000019346) #8	npm3 (ENSHCOG00000019322) #28	oga (ENSHCOG00000019309) #27	ENSHCOG00000019171 #21	ldb1a (ENSHCOG00000019149) #22	ENSHCOG00000019125	HPS6 (ENSHCOG00000019085)	KCNIP2 (ENSHCOG00000019056) #26	cox15 (ENSHCOG00000019028)	cutc (ENSHCOG00000019004)	ENSHCOG00000018973	ARHGAP19 (ENSHCOG00000018882)	slit1a (ENSHCOG00000018867)	ENSHCOG00000018769	ENSHCOG00000018739	ENSHCOG00000018725	st3gal7 (ENSHCOG00000000764)	st3gal7 (ENSHCOG00000018649)	hps1 (ENSHCOG00000018534)	HPSE2 (ENSHCOG00000018471)
Pinecone sodierfish	MODERN SPECIES	6	ENSMMDG00005012716	ENSMMDG00005012715	GDF10 (ENSMMDG00005012713)	prdm8 (ENSMMDG00005012712)	ENSMMDG00005012710	rrp12 (ENSMMDG00005012644)	UBTD1 (ENSMMDG00005012630)	zdhhc16a (ENSMMDG00005012594)	mettl18 (ENSMMDG00005012590)	sufu (ENSMMDG00005012560) #9	trim8b (ENSMMDG00005012553) #8	SFXN2 (ENSMMDG00005012440)	npm3 (ENSMMDG00005012425) #28	oga (ENSMMDG00005012357) #27	PPRC1 (ENSMMDG00005012347) #21	ldb1a (ENSMMDG00005011392) #22	ENSMMDG00005011371	HPS6 (ENSMMDG00005011364)	KCNIP2 (ENSMMDG00005011357) #26	cox15 (ENSMMDG00005011167)	cutc (ENSMMDG00005011130)	ENSMMDG00005009844	ENSMMDG00005009779	ARHGAP19 (ENSMMDG00005009773)	slit1a (ENSMMDG00005009763)	ENSMMDG00005009753	ENSMMDG00005009752	ENSMMDG00005009749	morn4 (ENSMMDG00005009747)	ENSMMDG00005009745	st3gal7 (ENSMMDG00005009720)
Cod	MODERN SPECIES	6	ENSGMOG00000030802	prdm8 (ENSGMOG00000004122)	ENSGMOG00000004147	rrp12 (ENSGMOG00000004188)	ENSGMOG00000004251	zdhhc16a (ENSGMOG00000004262)	mettl18 (ENSGMOG00000033798)	sufu (ENSGMOG00000004294) #9	ENSGMOG00000002884 #8	ENSGMOG00000034741	ENSGMOG00000032217	ENSGMOG00000029585	npm3 (ENSGMOG00000004317) #28	oga (ENSGMOG00000004336) #27	ENSGMOG00000025264 #21	LDB1 (ENSGMOG00000004439) #22	ENSGMOG00000004461	HPS6 (ENSGMOG00000033802)	ENSGMOG00000034333	ENSGMOG00000027483	ENSGMOG00000018120 #26	ENSGMOG00000018132	ENSGMOG00000018146	ENSGMOG00000018157	ENSGMOG00000025467	ENSGMOG00000018205	ENSGMOG00000018219	ENSGMOG00000027692	ENSGMOG00000027846	morn4 (ENSGMOG00000033836)	ENSGMOG00000022190
Protacanthopterygii	ANCESTRAL SPECIES	107	ENSGT00940000156026.e	ENSGT00940000155133.a.a.a	ENSGT00940000161964.g.a	ENSGT00940000160066	ENSGT00940000157214.f.b	ENSGT00890000139463.b.b.a	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00390000009747 #9	ENSGT00940000158796 #28	ENSGT00390000007726.a.a #27	ENSGT00950000183137.a.k #21	ENSGT00390000005639.a.b.d.a #22	ENSGT00530000063586.a	ENSGT00390000001546
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	604									ENSGT00940000158630.g.b.b	ENSGT00940000155032.k.e	ENSGT00390000000464	ENSGT00390000009747.g #9	ENSGT00940000158796 #28	ENSGT00390000007726.a.a.g #27	ENSGT00950000183137.a.k.d #21	ENSGT00390000005639.a.b.d.a.c #22	ENSGT00530000063586.a.o.a	ENSGT00390000001546	ENSGT00940000157798.b.f.a.b #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00530000063564.a.r	ENSGT00940000159342.b.g
Huchen	MODERN SPECIES	2524																ldb1a (ENSHHUG00000045322) #22	ENSHHUG00000045305	ENSHHUG00000045301
Salmoninae_a	ANCESTRAL SPECIES	16	ENSGT00390000014056.c.a.a	ENSGT00940000159008.d	ENSGT00390000008566.a	ENSGT00940000155684	ENSGT00940000165944.a	ENSGT00950000183015.B.a.b.k.b	ENSGT00940000153692.B.b.e	ENSGT00980000201113	ENSGT00940000158630.g.b.b	ENSGT00940000155032.k.e	ENSGT00390000000464	ENSGT00390000009747.g #9	ENSGT00940000158796 #28	ENSGT00390000007726.a.a.g #27	ENSGT00950000183137.a.k.d #21	ENSGT00390000005639.a.b.d.a.c #22	ENSGT00530000063586.a.o.a	ENSGT00390000001546	ENSGT00940000157798.b.f.a.b #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00530000063564.a.r	ENSGT00940000159342.b.g	ENSGT00940000157514.b	ENSGT00390000000403.e	ENSGT00940000153441.a.b.g	ENSGT00940000154962.B.j	ENSGT00940000159204.m	ENSGT00940000155996.h	ENSGT00940000156602.d	ENSGT01050000244968.d.s
Oncorhynchus	ANCESTRAL SPECIES	17	ENSGT00390000014056.c.a.a	ENSGT00940000159008.d	ENSGT00390000008566.a	ENSGT00940000155684	ENSGT00940000165944.a	ENSGT00950000183015.B.a.b.k.b	ENSGT00940000153692.B.b.e	ENSGT00980000201113	ENSGT00940000158630.g.b.b	ENSGT00940000155032.k.e	ENSGT00390000000464	ENSGT00390000009747.g #9	ENSGT00940000158796 #28	ENSGT00390000007726.a.a.g #27	ENSGT00950000183137.a.k.d #21	ENSGT00390000005639.a.b.d.a.c #22	ENSGT00530000063586.a.o.a	ENSGT00390000001546	ENSGT00940000157798.b.f.a.b #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00530000063564.a.r	ENSGT00940000159342.b.g	ENSGT00940000156772.b.d.b	ENSGT00990000211523	ENSGT00940000159406.h	ENSGT00390000000403.e	ENSGT00940000153441.a.b.g	ENSGT00940000154962.B.j	ENSGT00940000159204.m	ENSGT00940000155996.h
Oncorhynchus_a	ANCESTRAL SPECIES	13	ENSGT00390000014056.c.a.a	ENSGT00940000159008.d	ENSGT00390000008566.a	ENSGT00940000155684	ENSGT00940000165944.a	ENSGT00950000183015.B.a.b.k.b	ENSGT00940000153692.B.b.e	ENSGT00980000201113	ENSGT00940000158630.g.b.b	ENSGT00940000155032.k.e	ENSGT00390000000464	ENSGT00390000009747.g #9	ENSGT00940000158796 #28	ENSGT00390000007726.a.a.g #27	ENSGT00950000183137.a.k.d #21	ENSGT00390000005639.a.b.d.a.c #22	ENSGT00530000063586.a.o.a	ENSGT00390000001546	ENSGT00940000157798.b.f.a.b #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00530000063564.a.r	ENSGT00940000159342.b.g	ENSGT00940000156772.b.d.b	ENSGT00990000211523	ENSGT00940000159406.h	ENSGT00390000000403.e	ENSGT00940000153441.a.b.g	ENSGT00940000154962.B.j	ENSGT00940000159204.m	ENSGT00940000155996.h
Coho salmon	MODERN SPECIES	2	ENSOKIG00005031039	ARHGAP22 (ENSOKIG00005030960)	mapk8a (ENSOKIG00005029668)	ENSOKIG00005029587	ENSOKIG00005029573	ENSOKIG00005029555	ENSOKIG00005029526	UBTD1 (ENSOKIG00005029503)	ENSOKIG00005029492	zdhhc16a (ENSOKIG00005029446)	mettl18 (ENSOKIG00005029440)	sufu (ENSOKIG00005029381) #9	npm3 (ENSOKIG00005029369) #28	ENSOKIG00005029362	oga (ENSOKIG00005026998) #27	ldb1a (ENSOKIG00005026661) #22	ENSOKIG00005026633	HPS6 (ENSOKIG00005026593)	KCNIP2 (ENSOKIG00005026556) #26	cox15 (ENSOKIG00005026493)	cutc (ENSOKIG00005026437)	ENSOKIG00005026405	ENSOKIG00005026394	ENSOKIG00005026361	ENSOKIG00005026297	SIRT1 (ENSOKIG00005026234)	CACUL1 (ENSOKIG00005026219)	ENSOKIG00005026211	MYPN (ENSOKIG00005026103)	tial1 (ENSOKIG00005024612)	bag3 (ENSOKIG00005024552)
Chinook salmon	MODERN SPECIES		vstm4a (ENSOTSG00005010759)	WDFY4 (ENSOTSG00005010761)	ENSOTSG00005010771	ARHGAP22 (ENSOTSG00005010773)	mapk8a (ENSOTSG00005010785)	ENSOTSG00005012783	ENSOTSG00005012784	ENSOTSG00005012785	ubtd1b (ENSOTSG00005012786)	zdhhc16a (ENSOTSG00005012787)	mettl18 (ENSOTSG00005012789)	sufu (ENSOTSG00005012793) #9	npm3 (ENSOTSG00005012818) #28	oga (ENSOTSG00005012825) #27	ENSOTSG00005014084 #21	ldb1a (ENSOTSG00005014086) #22	ENSOTSG00005014096	HPS6 (ENSOTSG00005014098)	KCNIP2 (ENSOTSG00005014100) #26	cox15 (ENSOTSG00005000269)	cutc (ENSOTSG00005000560)	ENSOTSG00005000570	ENSOTSG00005000572	ENSOTSG00005000574	ENSOTSG00005000579	SIRT1 (ENSOTSG00005000594)	CACUL1 (ENSOTSG00005000599)	MYPN (ENSOTSG00005000611)	tial1 (ENSOTSG00005000627)	bag3 (ENSOTSG00005002090)	inpp5f (ENSOTSG00005002102)
Rainbow trout	MODERN SPECIES	15	WDFY4 (ENSOMYG00000066563)	ENSOMYG00000010599	ARHGAP22 (ENSOMYG00000035453)	mapk8a (ENSOMYG00000035762)	ENSOMYG00000052404	prdm8 (ENSOMYG00000038376)	ENSOMYG00000068983	ENSOMYG00000038391	ENSOMYG00000058950	ENSOMYG00000038415	ENSOMYG00000038462	ENSOMYG00000052650	sufu (ENSOMYG00000038556) #9	ENSOMYG00000038653 #28	ENSOMYG00000039449 #21	LDB1 (ENSOMYG00000042273) #22	ENSOMYG00000042289	HPS6 (ENSOMYG00000042297)	KCNIP2 (ENSOMYG00000042310) #26	ENSOMYG00000042323	ENSOMYG00000042343	ENSOMYG00000062879	ENSOMYG00000073186	ENSOMYG00000042356	ENSOMYG00000042373	ENSOMYG00000042397	ENSOMYG00000060320	ENSOMYG00000042420	tial1 (ENSOMYG00000042495)	bag3 (ENSOMYG00000042950)	ENSOMYG00000072546
Salmo	ANCESTRAL SPECIES	23	ENSGT00940000155684	ENSGT00990000212549	ENSGT00940000165944.a	ENSGT00950000183015.B.a.b.k.b	ENSGT00940000153692.B.b.e	ENSGT00980000201113	ENSGT00940000160066.y.a	ENSGT00890000139463.b.b.a.d	ENSGT00940000158630.g.b.b	ENSGT00940000155032.k.e	ENSGT00390000000464	ENSGT00390000009747.g #9	ENSGT00940000158796 #28	ENSGT00390000007726.a.a.g #27	ENSGT00950000183137.a.k.d #21	ENSGT00390000005639.a.b.d.a.c #22	ENSGT00530000063586.a.o.a	ENSGT00390000001546	ENSGT00940000157798.b.f.a.b #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00530000063564.a.r	ENSGT00940000159342.b.g	ENSGT00940000156772.b.d.b	ENSGT00990000211523	ENSGT00940000159406.h	ENSGT00390000000403.e	ENSGT00940000153441.a.b.g	ENSGT00940000154962.B.j	ENSGT00940000159204.m	ENSGT00940000155996.h
Atlantic salmon	MODERN SPECIES		ENSSSAG00000105082	ARHGAP22 (ENSSSAG00000122019)	mapk8a (ENSSSAG00000000486)	ENSSSAG00000000915	ENSSSAG00000114441	ENSSSAG00000101641	prdm8 (ENSSSAG00000118386)	ENSSSAG00000000954	zdhhc16a (ENSSSAG00000108711)	mettl18 (ENSSSAG00000000992)	sufu (ENSSSAG00000100619) #9	ENSSSAG00000001149	npm3 (ENSSSAG00000001158) #28	mgea5 (ENSSSAG00000001356) #27	pprc1 (ENSSSAG00000001834) #21	LDB1 (ENSSSAG00000001862) #22	ENSSSAG00000081804	ENSSSAG00000002085	ENSSSAG00000002098	ENSSSAG00000095234	KCNIP2 (ENSSSAG00000107078) #26	ENSSSAG00000002144	cutc (ENSSSAG00000002187)	ENSSSAG00000002252	ENSSSAG00000002303	ENSSSAG00000002414	ENSSSAG00000108049	ENSSSAG00000002433	ENSSSAG00000002445	ENSSSAG00000002461	ENSSSAG00000109033
River trout	MODERN SPECIES	9	ENSSTUG00000005927	ENSSTUG00000005942	ENSSTUG00000005972	ARHGAP22 (ENSSTUG00000005982)	mapk8a (ENSSTUG00000006023)	ENSSTUG00000006355	ENSSTUG00000006358	ENSSTUG00000006370	prdm8 (ENSSTUG00000006388)	ubtd1b (ENSSTUG00000006396)	zdhhc16a (ENSSTUG00000006405)	sufu (ENSSTUG00000006480) #9	npm3 (ENSSTUG00000006760) #28	oga (ENSSTUG00000006843) #27	ENSSTUG00000009156 #21	ldb1a (ENSSTUG00000009198) #22	ENSSTUG00000009286	HPS6 (ENSSTUG00000009318)	KCNIP2 (ENSSTUG00000009334) #26	cox15 (ENSSTUG00000009360)	cutc (ENSSTUG00000009427)	lrrfip2 (ENSSTUG00000009456)	ENSSTUG00000009799	ENSSTUG00000009853	ENSSTUG00000009900	CACUL1 (ENSSTUG00000009907)	MYPN (ENSSTUG00000009923)	tial1 (ENSSTUG00000010010)	bag3 (ENSSTUG00000010501)	inpp5f (ENSSTUG00000010521)	sec23ip (ENSSTUG00000010988)
Salmoninae	ANCESTRAL SPECIES	678					ENSGT00940000160066.y.b	ENSGT00940000157214.f.b.c	ENSGT00530000063174.a.k.c.a.b	ENSGT00890000139463.b.b.a.c	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b.a	ENSGT00940000155032.k.f	ENSGT00390000009747.h #9	ENSGT00390000007726.a.a.h #27	ENSGT00950000183137.a.k.c #21	ENSGT00390000005639.a.b.d.a.d #22	ENSGT00530000063586.a.o.b
Salmoninae_a	ANCESTRAL SPECIES	71	ENSGT00940000164383	ENSGT00940000157798.b.f.a.a #26	ENSGT00940000155133.a.a.a	ENSGT00940000161964.g.a	ENSGT00940000160066.y.b	ENSGT00940000157214.f.b.c	ENSGT00530000063174.a.k.c.a.b	ENSGT00890000139463.b.b.a.c	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b.a	ENSGT00940000155032.k.f	ENSGT00390000009747.h #9	ENSGT00390000007726.a.a.h #27	ENSGT00950000183137.a.k.c #21	ENSGT00390000005639.a.b.d.a.d #22	ENSGT00530000063586.a.o.b	ENSGT00940000153692.B.b.f	ENSGT00950000183015.B.a.b.k.a	ENSGT00940000165944.b	ENSGT00940000156026.e	ENSGT00730000111333.a	ENSGT00940000159008.c	ENSGT00940000158057	ENSGT00390000014056.c.a.b	ENSGT00390000006888	ENSGT00600000085077	ENSGT00940000160176	ENSGT00940000158274	ENSGT00500000044923	ENSGT00940000157609
Oncorhynchus	ANCESTRAL SPECIES	2	ENSGT00530000063564.a.q	ENSGT00940000164383	ENSGT00940000157798.b.f.a.a #26	ENSGT00940000155133.a.a.a	ENSGT00940000161964.g.a	ENSGT00940000160066.y.b	ENSGT00940000157214.f.b.c	ENSGT00890000139463.b.b.a.c	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b.a	ENSGT00940000155032.k.f	ENSGT00390000009747.h #9	ENSGT00390000007726.a.a.h #27	ENSGT00950000183137.a.k.c #21	ENSGT00390000005639.a.b.d.a.d #22	ENSGT00530000063586.a.o.b	ENSGT00940000153692.B.b.f	ENSGT00950000183015.B.a.b.k.a	ENSGT00940000165944.b	ENSGT00940000156026.e	ENSGT00730000111333.a	ENSGT00940000159008.c	ENSGT00940000158057	ENSGT00390000014056.c.a.b	ENSGT00390000006888	ENSGT00600000085077	ENSGT00990000209990	ENSGT00940000160176	ENSGT00940000158274	ENSGT00500000044923.f
Oncorhynchus_a	ANCESTRAL SPECIES	1	ENSGT00530000063564.a.q	ENSGT00940000164383	ENSGT00940000157798.b.f.a.a #26	ENSGT00940000155133.a.a.a	ENSGT00940000161964.g.a	ENSGT00940000160066.y.b	ENSGT00940000157214.f.b.c	ENSGT00890000139463.b.b.a.c	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b.a	ENSGT00940000155032.k.f	ENSGT00390000009747.h #9	ENSGT00390000007726.a.a.h #27	ENSGT00950000183137.a.k.c #21	ENSGT00390000005639.a.b.d.a.d #22	ENSGT00530000063586.a.o.b	ENSGT00940000153692.B.b.f	ENSGT00950000183015.B.a.b.k.a	ENSGT00940000165944.b	ENSGT00940000156026.e	ENSGT00730000111333.a	ENSGT00940000159008.c	ENSGT00940000158057	ENSGT00390000014056.c.a.b	ENSGT00390000006888	ENSGT00990000209990	ENSGT00940000160176	ENSGT00940000158274	ENSGT00500000044923.f	ENSGT00940000157609
Coho salmon	MODERN SPECIES	24	ENSOKIG00005035615	KCNIP2 (ENSOKIG00005035475) #26	ENSOKIG00005035423	ENSOKIG00005035405	ENSOKIG00005035375	GDF10 (ENSOKIG00005035356)	ENSOKIG00005035318	prdm8 (ENSOKIG00005035305)	ENSOKIG00005035133	rrp12 (ENSOKIG00005034779)	UBTD1 (ENSOKIG00005034753)	zdhhc16a (ENSOKIG00005034736)	sufu (ENSOKIG00005034475) #9	oga (ENSOKIG00005034319) #27	ENSOKIG00005034263 #21	LDB1 (ENSOKIG00005034079) #22	ENSOKIG00005034025	mapk8a (ENSOKIG00005031589)	ARHGAP22 (ENSOKIG00005031435)	ENSOKIG00005031413	LRRC18 (ENSOKIG00005031405)	ENSOKIG00005031400	ENSOKIG00005031352	drgx (ENSOKIG00005031327)	ERCC6 (ENSOKIG00005030506)	cxcl12a (ENSOKIG00005030367)	tmem72 (ENSOKIG00005030331)	ENSOKIG00005030303	rassf4a (ENSOKIG00005030284)	paox (ENSOKIG00005030260)	mtg1 (ENSOKIG00005030188)
Chinook salmon	MODERN SPECIES	30	ENSOTSG00005033895	mlh1 (ENSOTSG00005032452)	lrrfip2 (ENSOTSG00005032445)	ENSOTSG00005029370	KCNIP2 (ENSOTSG00005029351) #26	ENSOTSG00005029347	GDF10 (ENSOTSG00005029344)	prdm8 (ENSOTSG00005029343)	ENSOTSG00005029340	rrp12 (ENSOTSG00005029184)	ubtd1b (ENSOTSG00005029172)	zdhhc16a (ENSOTSG00005029171)	sufu (ENSOTSG00005047994) #9	oga (ENSOTSG00005047993) #27	ENSOTSG00005047991 #21	ldb1a (ENSOTSG00005047990) #22	ENSOTSG00005047989	mapk8a (ENSOTSG00005047987)	ARHGAP22 (ENSOTSG00005047985)	ENSOTSG00005047979	LRRC18 (ENSOTSG00005047978)	ENSOTSG00005047977	drgx (ENSOTSG00005047976)	ERCC6 (ENSOTSG00005047975)	cxcl12a (ENSOTSG00005047974)	tmem72 (ENSOTSG00005047973)	ENSOTSG00005047972	rassf4a (ENSOTSG00005047971)	paox (ENSOTSG00005047970)	mtg1 (ENSOTSG00005047969)	ENSOTSG00005047968
Rainbow trout	MODERN SPECIES		ENSOMYG00000019208 #26	ENSOMYG00000019160	ENSOMYG00000060100	ENSOMYG00000019126	ENSOMYG00000019110	ENSOMYG00000052736	prdm8 (ENSOMYG00000019104)	ENSOMYG00000019080	rrp12 (ENSOMYG00000019000)	ENSOMYG00000018951	zdhhc16a (ENSOMYG00000018944)	ENSOMYG00000060837	sufu (ENSOMYG00000018902) #9	oga (ENSOMYG00000015655) #27	ENSOMYG00000015359 #21	ENSOMYG00000015196 #22	ENSOMYG00000015169	mapk8a (ENSOMYG00000011169)	ENSOMYG00000010623	ENSOMYG00000035444	ENSOMYG00000061211	LRRC18 (ENSOMYG00000065155)	ENSOMYG00000064733	drgx (ENSOMYG00000010561)	ERCC6 (ENSOMYG00000009805)	cxcl12a (ENSOMYG00000009451)	ENSOMYG00000077271	tmem72 (ENSOMYG00000009415)	cxcf1a (ENSOMYG00000009351)	ENSOMYG00000009338	rassf4a (ENSOMYG00000009314)
Salmo	ANCESTRAL SPECIES	29	ENSGT00530000063564.a.q	ENSGT00940000164383	ENSGT00940000157798.b.f.a.a #26	ENSGT00940000155133.a.a.a	ENSGT00940000160066.y.b	ENSGT00940000157214.f.b.c	ENSGT00530000063174.a.k.c.a.b	ENSGT00890000139463.b.b.a.c	ENSGT00940000157727.x.b	ENSGT00390000013106	ENSGT00940000158630.g.b.a	ENSGT00940000155032.k.f	ENSGT00390000009747.h #9	ENSGT00390000007726.a.a.h #27	ENSGT00950000183137.a.k.c #21	ENSGT00390000005639.a.b.d.a.d #22	ENSGT00530000063586.a.o.b	ENSGT00940000153692.B.b.f	ENSGT00950000183015.B.a.b.k.a	ENSGT00940000165944.b	ENSGT00940000156026.e	ENSGT00730000111333.a	ENSGT00940000159008.c	ENSGT00940000158057	ENSGT00390000014056.c.a.b	ENSGT00390000006888	ENSGT00600000085077	ENSGT00940000160176	ENSGT00940000158274	ENSGT00500000044923	ENSGT00940000157609
River trout	MODERN SPECIES	35	KCNIP2 (ENSSTUG00000031971) #26	ENSSTUG00000032024	ENSSTUG00000032044	ENSSTUG00000032071	GDF10 (ENSSTUG00000032120)	ENSSTUG00000032133	prdm8 (ENSSTUG00000032239)	ENSSTUG00000032249	rrp12 (ENSSTUG00000032472)	ubtd1b (ENSSTUG00000032762)	zdhhc16a (ENSSTUG00000032774)	ENSSTUG00000032789	sufu (ENSSTUG00000032803) #9	oga (ENSSTUG00000032916) #27	ENSSTUG00000035193 #21	ldb1a (ENSSTUG00000035218) #22	ENSSTUG00000035312	mapk8a (ENSSTUG00000035357)	ARHGAP22 (ENSSTUG00000036227)	ENSSTUG00000036250	LRRC18 (ENSSTUG00000036274)	ENSSTUG00000036291	drgx (ENSSTUG00000036331)	ERCC6 (ENSSTUG00000036387)	cxcl12a (ENSSTUG00000037282)	tmem72 (ENSSTUG00000037290)	rassf4a (ENSSTUG00000037299)	ENSSTUG00000037314	paox (ENSSTUG00000037331)	mtg1 (ENSSTUG00000037338)	echs1 (ENSSTUG00000037362)
Atlantic salmon	MODERN SPECIES	9	ENSSSAG00000108258 #26	ENSSSAG00000099422	ENSSSAG00000080902	ENSSSAG00000080900	ENSSSAG00000080897	ENSSSAG00000101192	ENSSSAG00000080888	prdm8 (ENSSSAG00000085200)	ENSSSAG00000080861	rrp12 (ENSSSAG00000080485)	ENSSSAG00000086687	zdhhc16a (ENSSSAG00000080436)	sufu (ENSSSAG00000111263) #9	oga (ENSSSAG00000080089) #27	ENSSSAG00000080066 #21	ENSSSAG00000116511 #22	ENSSSAG00000079953	ENSSSAG00000084238	mapk8a (ENSSSAG00000079743)	ENSSSAG00000079715	ENSSSAG00000079713	LRRC18 (ENSSSAG00000079709)	ENSSSAG00000121013	ENSSSAG00000079705	drgx (ENSSSAG00000079700)	ENSSSAG00000084842	ercc6 (ENSSSAG00000079574)	cxcl12a (ENSSSAG00000117767)	tmem72 (ENSSSAG00000079559)	ENSSSAG00000085842	ENSSSAG00000096942
Huchen	MODERN SPECIES	2212														oga (ENSHHUG00000033620) #27	ENSHHUG00000033641 #21	ldb1a (ENSHHUG00000033647) #22	ENSHHUG00000033962
Northern pike	MODERN SPECIES	5		vps72a (ENSELUG00000011760)	rgra (ENSELUG00000011744)	lrit1a (ENSELUG00000011725)	ENSELUG00000026696	ubtd1b (ENSELUG00000021895)	ENSELUG00000034023	zdhhc16a (ENSELUG00000021881)	mettl18 (ENSELUG00000021814)	ENSELUG00000024845	sufu (ENSELUG00000021791) #9	npm3 (ENSELUG00000031526) #28	oga (ENSELUG00000021698) #27	PPRC1 (ENSELUG00000021650) #21	ENSELUG00000034498	ldb1a (ENSELUG00000021623) #22	ENSELUG00000028753	HPS6 (ENSELUG00000021462)	ENSELUG00000021538	KCNIP2 (ENSELUG00000011605) #26	cox15 (ENSELUG00000026977)	cutc (ENSELUG00000011724)	ENSELUG00000031570	ENSELUG00000011778	ENSELUG00000001064	lrrfip2 (ENSELUG00000012027)	mlh1 (ENSELUG00000012077)	ENSELUG00000026978	ENSELUG00000032428	ENSELUG00000021435	ENSELUG00000021394
Clupeocephala	ANCESTRAL SPECIES	97	ENSGT00940000160070.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000170319	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00940000175336	ENSGT00730000111173.h	ENSGT00530000063604.A	ENSGT00940000157525.a
Otomorpha	ANCESTRAL SPECIES	55	ENSGT00940000155830.e.b	ENSGT00940000168750	ENSGT00940000160070.b.a.b	ENSGT00950000183044.a.a.a.a.a	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00940000162611.b	ENSGT00940000162611.a.b	ENSGT00730000111173.g	ENSGT00940000153956.b	ENSGT00940000165889
Otophysi	ANCESTRAL SPECIES	230	ENSGT00940000160070.b.a.b	ENSGT00950000183044.a.a.a.a.a	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000015228	ENSGT00390000018807
Characiphysae	ANCESTRAL SPECIES	8	ENSGT00390000004090	ENSGT00940000160070.b.a.b	ENSGT00950000183044.a.a.a.a.a	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.a.a.a.a.b	ENSGT00940000155037	ENSGT01100000263524.G.f.b	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000166218	ENSGT00940000160591.a.a	ENSGT00390000011698.c.a.b	ENSGT00390000011249	ENSGT00530000063405.a	ENSGT00940000156318.b.b	ENSGT00940000153986.b.a.u.b	ENSGT00390000007753.a	ENSGT00940000156291.e
Channel catfish	MODERN SPECIES	1	ENSIPUG00000021381	MAFG (ENSIPUG00000021402)	pycr1 (ENSIPUG00000021406)	ENSIPUG00000021416	aspscr1 (ENSIPUG00000021419)	notum (ENSIPUG00000021448)	tmc6 (ENSIPUG00000021463)	tmc8 (ENSIPUG00000021499)	ENSIPUG00000021525	syngr2b (ENSIPUG00000021531)	tk1 (ENSIPUG00000021545)	afmid (ENSIPUG00000021582)	cant1 (ENSIPUG00000021609)	ENSIPUG00000021621 ##27	si:dkey-93h22.8 (ENSIPUG00000021651) #21	ldb1b (ENSIPUG00000021664) #22	orc2 (ENSIPUG00000021681)	c10h21orf2 (ENSIPUG00000021692)	pfkl (ENSIPUG00000021701)	rpl37a (ENSIPUG00000021767)	eif4a3 (ENSIPUG00000021785)	opn6a (ENSIPUG00000021834)	STRN (ENSIPUG00000021850)	map1lc3c (ENSIPUG00000021896)	irf2bp2 (ENSIPUG00000021926)	ENSIPUG00000021929	tomm20b (ENSIPUG00000021935)	rbm34 (ENSIPUG00000021952)	tbce (ENSIPUG00000021983)	nid1 (ENSIPUG00000022017)	gpr137b (ENSIPUG00000022038)
Characiphysae_b	ANCESTRAL SPECIES	4	ENSGT00390000004090	ENSGT00940000160070.b.a.b	ENSGT00950000183044.a.a.a.a.a	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.a.a.a.a.b	ENSGT00940000155037	ENSGT01100000263524.G.f.b	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000166218	ENSGT00940000160591.a.a	ENSGT00390000011698.c.a.b	ENSGT00390000011249	ENSGT00530000063405.a	ENSGT00940000156318.b.b	ENSGT00940000153986.b.a.u.b	ENSGT00390000007753.a	ENSGT00940000156291.e
Characoidei	ANCESTRAL SPECIES	18	ENSGT00390000004090	ENSGT00940000160070.b.a.b	ENSGT00950000183044.a.a.a.a.a	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.a.a.a.a.b	ENSGT00940000155037	ENSGT01100000263524.G.f.b	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000166218	ENSGT00940000160591.a.a	ENSGT00390000011698.c.a.b	ENSGT00390000011249	ENSGT00530000063405.a	ENSGT00940000156318.b.b	ENSGT00940000153986.b.a.u.b	ENSGT00390000007753.a	ENSGT00940000156291.e
Mexicana tetra	MODERN SPECIES	20	ENSAMXG00000020370	mafgb (ENSAMXG00000020381)	pycr1b (ENSAMXG00000040337)	ENSAMXG00000025273	aspscr1 (ENSAMXG00000020425)	NOTUM (ENSAMXG00000020491)	TMC6 (ENSAMXG00000020529)	TMC8 (ENSAMXG00000020582)	ENSAMXG00000031343	syngr2b (ENSAMXG00000037996)	tk1 (ENSAMXG00000020703)	afmid (ENSAMXG00000039072)	cant1b (ENSAMXG00000043529)	ENSAMXG00000029086 ##27	si:dkey-93h22.8 (ENSAMXG00000020783) #21	ldb1b (ENSAMXG00000012067) #22	ENSAMXG00000020816	CFAP410 (ENSAMXG00000034889)	pfklb (ENSAMXG00000020865)	zgc:171772 (ENSAMXG00000041482)	eif4a3 (ENSAMXG00000020882)	opn6a (ENSAMXG00000020921)	ENSAMXG00000035494	strn (ENSAMXG00000021069)	map1lc3c (ENSAMXG00000043525)	ENSAMXG00000040813	irf2bp2b (ENSAMXG00000021316)	tomm20b (ENSAMXG00000042169)	rbm34 (ENSAMXG00000021328)	ENSAMXG00000040370	tbce (ENSAMXG00000021338)
Red-bellied piranha	MODERN SPECIES	649									gpc4 (ENSPNAG00000007885)	hs6st2 (ENSPNAG00000005289)	mbnl3 (ENSPNAG00000007910)	rap2c (ENSPNAG00000007924)	zgc:92907 (ENSPNAG00000007933)	il2rgb (ENSPNAG00000007954)	ENSPNAG00000007957	ldb1b (ENSPNAG00000000573) #22	ORC2 (ENSPNAG00000007996)	ENSPNAG00000008005	pfklb (ENSPNAG00000008024)	zgc:171772 (ENSPNAG00000000609)	eif4a3 (ENSPNAG00000008053)	opn6a (ENSPNAG00000008071)	ENSPNAG00000000647	ENSPNAG00000000652	ENSPNAG00000008090
Electric eel	MODERN SPECIES	762				pycr1b (ENSEEEG00000021691)	ENSEEEG00000021706	aspscr1 (ENSEEEG00000021708)	ENSEEEG00000021711	TMC6 (ENSEEEG00000021714)	TMC8 (ENSEEEG00000021775)	ENSEEEG00000021779 ##27	syngr2b (ENSEEEG00000021783)	tk1 (ENSEEEG00000021784)	afmid (ENSEEEG00000021787)	cant1b (ENSEEEG00000021788)	ENSEEEG00000021789 #21	ldb1b (ENSEEEG00000021792) #22	ORC2 (ENSEEEG00000021798)	ENSEEEG00000021815	pfklb (ENSEEEG00000021830)
Cyprinoidei	ANCESTRAL SPECIES	27	ENSGT00940000160070.b.a.b	ENSGT00950000183044.a.a.a.a.a	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000015228	ENSGT00390000018807	ENSGT00940000159292.v	ENSGT00390000016988.a.a.a.a.b	ENSGT00940000155037	ENSGT01100000263524.G.f.b	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000166218	ENSGT00940000160591.a.a	ENSGT00390000011698.c.a.b	ENSGT00390000011249	ENSGT00530000063405.a	ENSGT00390000007753.a	ENSGT01100000263538.A.a.a.b.b	ENSGT00390000013727.d.a
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	476															ENSGT01000000219139	ENSGT00390000005639.a.b.d.b.a.a #22	ENSGT00390000015228	ENSGT00390000018807	ENSGT00940000159292.u.b	ENSGT00940000166218.d	ENSGT00940000160591.a.a.b	ENSGT00390000011698.c.a.b.n	ENSGT00390000011249	ENSGT00530000063405.a	ENSGT00390000007753.a	ENSGT00940000162556.A.b.g	ENSGT00390000013727.d.a.b	ENSGT01000000214413.b.a.a.q.a.b.a	ENSGT00940000155212.ab.a.d	ENSGT00390000005717.s	ENSGT00940000164897.a.b.f
Cyprininae_a	ANCESTRAL SPECIES	348					ENSGT00940000156853.r	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a.c	ENSGT01050000244894.a.a.a.b.i	ENSGT00950000182935.B.a.c.a	ENSGT00390000011309.p	ENSGT00390000011093	ENSGT00390000012872.b.a	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b.b #22	ENSGT01000000219139	ENSGT00390000005639.a.b.d.b.a.a #22	ENSGT00390000015228	ENSGT00390000018807	ENSGT00940000159292.v.b	ENSGT01100000263476.E.b.a.a.a.a.b.b	ENSGT00390000016988.a.a.a.a.b	ENSGT00940000155037	ENSGT01100000263524.G.f.b	ENSGT00950000183095.a.b.a.b.b.a.a	ENSGT00940000166218.d	ENSGT00940000166218.c.a	ENSGT00940000160591.a.a.b	ENSGT00390000011698.c.a.b.n	ENSGT00390000011249	ENSGT00530000063405.a.ab	ENSGT00940000156318.b.b.m
Common carp reference	MODERN SPECIES	13	rfc4 (ENSCCRG00000067369)	ankrd13c (ENSCCRG00000022083)	ENSCCRG00000007021	srsf11 (ENSCCRG00000079275)	mafgb (ENSCCRG00000071085)	pycr1b (ENSCCRG00000075302)	ENSCCRG00000053033	aspscr1 (ENSCCRG00000007078)	ENSCCRG00000007086	ENSCCRG00000049618	ENSCCRG00000039806	ENSCCRG00000057342	ENSCCRG00000036411	tk1 (ENSCCRG00000036374)	ENSCCRG00000038287	ldb1b (ENSCCRG00000075309) #22	ENSCCRG00000067968	ENSCCRG00000045296	ENSCCRG00000031895	pfklb (ENSCCRG00000031972)	ENSCCRG00000047598	ENSCCRG00000010733	zgc:171772 (ENSCCRG00000010731)	eif4a3 (ENSCCRG00000021863)	opn6a (ENSCCRG00000075563)	strn (ENSCCRG00000044182)	map1lc3c (ENSCCRG00000066841)	irf2bp2b (ENSCCRG00000072833)	tomm20b (ENSCCRG00000061925)	rbm34 (ENSCCRG00000011466)	tbce (ENSCCRG00000003697)
Goldfish	MODERN SPECIES	2	srsf11 (ENSCARG00000003612)	TRAPPC10 (ENSCARG00000003622)	mafgb (ENSCARG00000003636)	pycr1b (ENSCARG00000003650)	ENSCARG00000003689	aspscr1 (ENSCARG00000003726)	NOTUM (ENSCARG00000003858)	TMC6 (ENSCARG00000004219)	TMC8 (ENSCARG00000004260)	ENSCARG00000004304	syngr2b (ENSCARG00000004315)	tk1 (ENSCARG00000004327)	afmid (ENSCARG00000004378)	cant1b (ENSCARG00000004397)	ENSCARG00000004412 ##27	ldb1b (ENSCARG00000004487) #22	rfc4 (ENSCARG00000004810)	sos1 (ENSCARG00000004994)	strn (ENSCARG00000008045)	opn6a (ENSCARG00000009217)	eif4a3 (ENSCARG00000009233)	ENSCARG00000009390	pfklb (ENSCARG00000009473)	CFAP410 (ENSCARG00000010452)	ORC2 (ENSCARG00000010474)	ankrd13c (ENSCARG00000010823)	srsf11 (ENSCARG00000010858)	TRAPPC10 (ENSCARG00000010871)	GEMIN6 (ENSCARG00000010891)	srsf7b (ENSCARG00000010916)	HNRNPLL (ENSCARG00000010964)
Cyprininae	ANCESTRAL SPECIES																	ENSGT00390000005639.a.b.d.b.a.b #22
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	29	zgc:158258 (ENSCARG00000006994)	sh2d5 (ENSCARG00000006999)	hp1bp3 (ENSCARG00000007017)	CDK18 (ENSCARG00000007139)	elk4 (ENSCARG00000007854)	mfsd4aa (ENSCARG00000007873)	ENSCARG00000007913	slc45a3 (ENSCARG00000007915)	ENSCARG00000007924	TMC8 (ENSCARG00000007930)	syngr2b (ENSCARG00000007944)	tk1 (ENSCARG00000007951)	cant1b (ENSCARG00000007957)	cant1b (ENSCARG00000007965)	ENSCARG00000007975 ##27	ldb1b (ENSCARG00000007998) #22	ENSCARG00000008059	ENSCARG00000008076 ##27	tk1 (ENSCARG00000008098)	syngr2b (ENSCARG00000008195)	TMC6 (ENSCARG00000008227)	aspscr1 (ENSCARG00000008242)	pycr1b (ENSCARG00000008261)	mafgb (ENSCARG00000008276)	ENSCARG00000008284	srsf11 (ENSCARG00000008296)	ankrd13c (ENSCARG00000008306)	plaat1 (ENSCARG00000008320)	GEMIN6 (ENSCARG00000008335)	ENSCARG00000008339	HNRNPLL (ENSCARG00000008353)
Goldfish	MODERN SPECIES	29	ENSCARG00000012044	ENSCARG00000012041	ENSCARG00000012007	ENSCARG00000012015	ENSCARG00000011998	ENSCARG00000011996	mfn1b (ENSCARG00000011576)	gnb4b (ENSCARG00000011433)	ENSCARG00000011414	ENSCARG00000011405	ENSCARG00000011402	ENSCARG00000011393	ATL2 (ENSCARG00000011283)	LOXL4 (ENSCARG00000011234)	ENSCARG00000011219	ldb1b (ENSCARG00000011166) #22	ENSCARG00000011157	ENSCARG00000011147	ENSCARG00000011143	FILIP1L (ENSCARG00000011137)	ENSCARG00000011134	LOXL4 (ENSCARG00000011112)	ATL2 (ENSCARG00000010128)	HNRNPLL (ENSCARG00000009600)	GEMIN6 (ENSCARG00000009568)	ENSCARG00000009555	tomm20b (ENSCARG00000009550)	irf2bp2b (ENSCARG00000009545)	map1lc3c (ENSCARG00000009524)	strn (ENSCARG00000009293)	opn6a (ENSCARG00000009273)
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00390000005639.a.b.d.b.a.b #22
Common carp reference	MODERN SPECIES	42	ankrd13c (ENSCCRG00000053419)	srsf11 (ENSCCRG00000022067)	ENSCCRG00000076299	ENSCCRG00000007058	mafgb (ENSCCRG00000066606)	pycr1b (ENSCCRG00000054963)	aspscr1 (ENSCCRG00000065331)	TMC6 (ENSCCRG00000051089)	TMC8 (ENSCCRG00000072909)	ENSCCRG00000073842	syngr2b (ENSCCRG00000036364)	tk1 (ENSCCRG00000047295)	cant1b (ENSCCRG00000015933)	ENSCCRG00000007932 ##27	si:dkey-93h22.8 (ENSCCRG00000074641) #21	ldb1b (ENSCCRG00000001723) #22	ENSCCRG00000021896	ENSCCRG00000021891	eif4a3 (ENSCCRG00000021882)	strn (ENSCCRG00000063952)	map1lc3c (ENSCCRG00000066718)	irf2bp2b (ENSCCRG00000075369)	tomm20b (ENSCCRG00000024546)	tbce (ENSCCRG00000067190)	ENSCCRG00000002529	ENSCCRG00000069883	ENSCCRG00000063152	ENSCCRG00000065769	ENSCCRG00000067712	ENSCCRG00000064967	ENSCCRG00000056853
Cyprininae	ANCESTRAL SPECIES	993												ENSGT00390000011309.o	ENSGT00390000012872.b.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b.b #22
Cyprininae_a	ANCESTRAL SPECIES	348							ENSGT00940000156853.r	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a.c	ENSGT01050000244894.a.a.a.b.i	ENSGT00950000182935.B.a.c.a	ENSGT00390000011309.p	ENSGT00390000011093	ENSGT00390000012872.b.a	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b.b #22	ENSGT01000000219139	ENSGT00390000005639.a.b.d.b.a.a #22	ENSGT00390000015228	ENSGT00390000018807	ENSGT00940000159292.v.b	ENSGT01100000263476.E.b.a.a.a.a.b.b	ENSGT00390000016988.a.a.a.a.b	ENSGT00940000155037	ENSGT01100000263524.G.f.b	ENSGT00950000183095.a.b.a.b.b.a.a	ENSGT00940000166218.d	ENSGT00940000166218.c.a	ENSGT00940000160591.a.a.b	ENSGT00390000011698.c.a.b.n	ENSGT00390000011249
Golden-line barbel	MODERN SPECIES	1172											syngr2b (ENSSGRG00000034319)	tk1 (ENSSGRG00000034324)	cant1b (ENSSGRG00000034348)	ENSSGRG00000034349 ##27	si:dkey-93h22.8 (ENSSGRG00000034350) #21	ldb1b (ENSSGRG00000034351) #22	zgc:171772 (ENSSGRG00000034408)	opn6a (ENSSGRG00000034411)	strn (ENSSGRG00000034415)	ENSSGRG00000034421	irf2bp2b (ENSSGRG00000034425)
Zebrafish	MODERN SPECIES	2	ENSDARG00000101309	mafgb (ENSDARG00000100097)	pycr1b (ENSDARG00000098639)	aspscr1 (ENSDARG00000105321)	notum1b (ENSDARG00000117145)	ENSDARG00000004875	TMC8 (ENSDARG00000101050)	ENSDARG00000101146	ENSDARG00000099600	syngr2b (ENSDARG00000104470)	tk1 (ENSDARG00000102245)	afmid (ENSDARG00000099106)	cant1b (ENSDARG00000102977)	ENSDARG00000103266 ##27	si:dkey-93h22.8 (ENSDARG00000098666) #21	ldb1b (ENSDARG00000103158) #22	ENSDARG00000101465	CFAP410 (ENSDARG00000099397)	pfklb (ENSDARG00000099755)	zgc:171772 (ENSDARG00000115271)	eif4a3 (ENSDARG00000102978)	opn6a (ENSDARG00000102430)	strn (ENSDARG00000100011)	map1lc3c (ENSDARG00000100528)	irf2bp2b (ENSDARG00000098635)	tomm20b (ENSDARG00000103566)	rbm34 (ENSDARG00000101877)	tbce (ENSDARG00000099921)	NID1 (ENSDARG00000103129)	ENSDARG00000077608	ero1b (ENSDARG00000103915)
Clupeiformes	ANCESTRAL SPECIES	8										ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00940000162611.b	ENSGT00940000162611.a.b	ENSGT00730000111173.g	ENSGT00530000067963	ENSGT00940000163053.c.a
Denticle herring	MODERN SPECIES	13	ENSDCDG00000000828	TMC6 (ENSDCDG00000000838)	NOTUM (ENSDCDG00000000857)	aspscr1 (ENSDCDG00000000885)	ENSDCDG00000000895	pycr1b (ENSDCDG00000000900)	mafgb (ENSDCDG00000000914)	ENSDCDG00000000924	SIRT7 (ENSDCDG00000000939)	syngr2b (ENSDCDG00000000953)	tk1 (ENSDCDG00000000962)	afmid (ENSDCDG00000000971)	cant1b (ENSDCDG00000000981)	ENSDCDG00000001004 ##27	si:dkey-93h22.8 (ENSDCDG00000001043) #21	ldb1b (ENSDCDG00000001084) #22	armh3 (ENSDCDG00000001301) #24	KCNIP2 (ENSDCDG00000001316) #26	ARHGAP19 (ENSDCDG00000001323)	slit1b (ENSDCDG00000001399)	ENSDCDG00000002106	ENSDCDG00000002115	MORN4 (ENSDCDG00000002121)	hoga1 (ENSDCDG00000002126)	ENSDCDG00000002133	ENSDCDG00000002139	GOT1 (ENSDCDG00000002146)	ENSDCDG00000002154	ENTPD7 (ENSDCDG00000002163)	ENSDCDG00000002170	atpv0e2 (ENSDCDG00000002173)
Euteleosteomorpha	ANCESTRAL SPECIES	68	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000157145	ENSGT00940000179277	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000162611.a.b	ENSGT00940000170319	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00730000111173.g
Acanthomorphata	ANCESTRAL SPECIES	95	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b
Euacanthomorphacea	ANCESTRAL SPECIES	3	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #29	ENSGT00390000014031 #31
Pinecone sodierfish	MODERN SPECIES		ENSMMDG00005002633	MAFG (ENSMMDG00005002644)	ENSMMDG00005002703	ENSMMDG00005002928	aspscr1 (ENSMMDG00005002941)	NOTUM (ENSMMDG00005002962)	TMC6 (ENSMMDG00005002968)	TMC8 (ENSMMDG00005002983)	ENSMMDG00005003001	syngr2b (ENSMMDG00005003010)	tk1 (ENSMMDG00005003015)	afmid (ENSMMDG00005003026)	cant1b (ENSMMDG00005003053)	ENSMMDG00005003059 ##27	ENSMMDG00005003071 #21	ldb1b (ENSMMDG00005003141) #22	armh3 (ENSMMDG00005004934) #24	KCNIP2 (ENSMMDG00005004975) #26	jupa (ENSMMDG00005005176)	ENSMMDG00005007084	ENSMMDG00005007443	krt99 (ENSMMDG00005007454)	krt15 (ENSMMDG00005007456)	krt98 (ENSMMDG00005007462)	krt94 (ENSMMDG00005007671)	SMAP1 (ENSMMDG00005007676)	cenpk (ENSMMDG00005007682)	lbx1b (ENSMMDG00005007684)	slc2a15b (ENSMMDG00005007691)	fgf8b (ENSMMDG00005007695) #29	dpcd (ENSMMDG00005007698) #31
Percomorphaceae	ANCESTRAL SPECIES	20	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #29	ENSGT00390000014031 #31
Tiger tail seahorse	MODERN SPECIES	382	pcyt2 (ENSHCOG00000014983)	SIRT7 (ENSHCOG00000015014)	ENSHCOG00000015027	MAFG (ENSHCOG00000015051)	ENSHCOG00000015090	ENSHCOG00000015097	aspscr1 (ENSHCOG00000015163)	TMC6 (ENSHCOG00000015176)	TMC8 (ENSHCOG00000015222)	syngr2b (ENSHCOG00000015227)	tk1 (ENSHCOG00000015236)	afmid (ENSHCOG00000015242)	cant1b (ENSHCOG00000015276)	ENSHCOG00000015318 ##27	ENSHCOG00000015325 #21	ldb1b (ENSHCOG00000015353) #22	armh3 (ENSHCOG00000015410) #24	KCNIP2 (ENSHCOG00000015439) #26	jupa (ENSHCOG00000015466)	ENSHCOG00000015579	ENSHCOG00000000435	krt99 (ENSHCOG00000015602)	krt15 (ENSHCOG00000015609)	krt98 (ENSHCOG00000015617)	krt94 (ENSHCOG00000015619)	SMAP1 (ENSHCOG00000015623)	cenpk (ENSHCOG00000015628)	lbx1b (ENSHCOG00000015655)	slc2a15b (ENSHCOG00000015684)	fgf8b (ENSHCOG00000015697) #29	dpcd (ENSHCOG00000015714) #31
Percomorphaceae_B	ANCESTRAL SPECIES		ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #29	ENSGT00390000014031 #31
Ovalentaria	ANCESTRAL SPECIES		ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #29	ENSGT00390000014031 #31
Atherinomorphae	ANCESTRAL SPECIES	23	ENSGT00390000004090	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #29	ENSGT00390000014031 #31
Oryzias	ANCESTRAL SPECIES	28	ENSGT00940000159703	ENSGT00390000004090	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00940000158005	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #29
Oryzias_a	ANCESTRAL SPECIES	34	ENSGT00940000159703	ENSGT00390000004090	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT01050000244894.b.b.d.a	ENSGT00940000175759	ENSGT01050000244894.a.a.a.b	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00940000158005	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #29
Japanese Medaka HdrR	MODERN SPECIES		ENSORLG00000012206	aspscr1 (ENSORLG00000012233)	TMC6 (ENSORLG00000012252)	ENSORLG00000002297	ENSORLG00000018498	TMC8 (ENSORLG00000012270)	ENSORLG00000029767	syngr2b (ENSORLG00000012291)	tk1 (ENSORLG00000012303)	afmid (ENSORLG00000012308)	cant1b (ENSORLG00000012320)	ENSORLG00000012348 ##27	si:dkey-93h22.8 (ENSORLG00000012355) #21	ENSORLG00000028445	ENSORLG00000022645	ldb1b (ENSORLG00000012373) #22	tk2 (ENSORLG00000012380)	armh3 (ENSORLG00000012426) #24	ENSORLG00000012486 #26	jupa (ENSORLG00000012542)	ENSORLG00000025102	ENSORLG00000012551	krt99 (ENSORLG00000012569)	ENSORLG00000012618	krt98 (ENSORLG00000012646)	krt94 (ENSORLG00000012662)	SMAP1 (ENSORLG00000012694)	cenpk (ENSORLG00000012705)	lbx1b (ENSORLG00000012711)	slc2a15b (ENSORLG00000012848)	fgf8b (ENSORLG00000012857) #29
Chinese medaka	MODERN SPECIES	305															ENSOSIG00000000210	ldb1b (ENSOSIG00000000167) #22	tk2 (ENSOSIG00000000108)	armh3 (ENSOSIG00000016208) #24	KCNIP2 (ENSOSIG00000016202) #26	jupa (ENSOSIG00000016174)	ENSOSIG00000016159	ENSOSIG00000016157	ENSOSIG00000016154	ENSOSIG00000016151	krt98 (ENSOSIG00000016149)	krt94 (ENSOSIG00000016147)	ENSOSIG00000016145	cenpk (ENSOSIG00000016144)	lbx1b (ENSOSIG00000016142)	slc2a15b (ENSOSIG00000016129)	fgf8b (ENSOSIG00000015992) #29
Oryzias_b	ANCESTRAL SPECIES	25	ENSGT00940000159703	ENSGT00390000004090	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00940000158005	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #29
Indian medaka	MODERN SPECIES	35	pcyt2 (ENSOMEG00000012760)	SIRT7 (ENSOMEG00000012708)	ENSOMEG00000012670	MAFG (ENSOMEG00000012627)	ENSOMEG00000012599	ENSOMEG00000012567	aspscr1 (ENSOMEG00000012552)	TMC6 (ENSOMEG00000012507)	ENSOMEG00000012410	syngr2b (ENSOMEG00000012392)	tk1 (ENSOMEG00000012372)	afmid (ENSOMEG00000012333)	cant1b (ENSOMEG00000012241)	ENSOMEG00000012211 ##27	si:dkey-93h22.8 (ENSOMEG00000012140) #21	ldb1b (ENSOMEG00000012071) #22	tk2 (ENSOMEG00000012043)	armh3 (ENSOMEG00000011996) #24	KCNIP2 (ENSOMEG00000011905) #26	jupa (ENSOMEG00000011864)	ENSOMEG00000011780	ENSOMEG00000011746	krt99 (ENSOMEG00000011727)	ENSOMEG00000011684	krt98 (ENSOMEG00000011645)	krt94 (ENSOMEG00000011603)	SMAP1 (ENSOMEG00000011561)	cenpk (ENSOMEG00000011482)	lbx1b (ENSOMEG00000011455)	slc2a15b (ENSOMEG00000011443)	fgf8b (ENSOMEG00000011400) #29
Javanese ricefish	MODERN SPECIES		SIRT7 (ENSOJAG00000001605)	MAFG (ENSOJAG00000001591)	ENSOJAG00000001583	ENSOJAG00000001550	ENSOJAG00000001539	aspscr1 (ENSOJAG00000001510)	TMC6 (ENSOJAG00000001484)	ENSOJAG00000001467	ENSOJAG00000001453	syngr2b (ENSOJAG00000001446)	tk1 (ENSOJAG00000001442)	afmid (ENSOJAG00000001429)	cant1b (ENSOJAG00000001423)	ENSOJAG00000001418 ##27	ENSOJAG00000001413	ldb1b (ENSOJAG00000001294) #22	tk2 (ENSOJAG00000001245)	armh3 (ENSOJAG00000001194) #24	KCNIP2 (ENSOJAG00000001166) #26	jupa (ENSOJAG00000000979)	ENSOJAG00000000881	ENSOJAG00000000871	krt99 (ENSOJAG00000000865)	ENSOJAG00000000812	krt98 (ENSOJAG00000000775)	KRT19 (ENSOJAG00000000485)	ENSOJAG00000000325	SMAP1 (ENSOJAG00000000318)	cenpk (ENSOJAG00000000304)	lbx1b (ENSOJAG00000000302)	slc2a15b (ENSOJAG00000000287)
Cyprinodontiformes	ANCESTRAL SPECIES	24	ENSGT00390000004090	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #29	ENSGT00390000014031 #31
Aplocheiloidei	ANCESTRAL SPECIES	31	ENSGT00940000159703	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #29	ENSGT00390000014031 #31
Mangrove rivulus	MODERN SPECIES	38	SIRT7 (ENSKMAG00000018989)	MAFG (ENSKMAG00000019014)	ENSKMAG00000019045	ENSKMAG00000019081	aspscr1 (ENSKMAG00000019094)	NOTUM (ENSKMAG00000019123)	TMC6 (ENSKMAG00000019155)	TMC8 (ENSKMAG00000019198)	ENSKMAG00000019320	syngr2b (ENSKMAG00000019727)	tk1 (ENSKMAG00000019744)	afmid (ENSKMAG00000019775)	cant1b (ENSKMAG00000019804)	ENSKMAG00000019823 ##27	si:dkey-93h22.8 (ENSKMAG00000019855) #21	ldb1b (ENSKMAG00000019878) #22	armh3 (ENSKMAG00000019917) #24	KCNIP2 (ENSKMAG00000019986) #26	jupa (ENSKMAG00000020020)	ENSKMAG00000020079	ENSKMAG00000020171	krt99 (ENSKMAG00000020185)	krt15 (ENSKMAG00000020200)	krt98 (ENSKMAG00000020226)	krt94 (ENSKMAG00000020377)	SMAP1 (ENSKMAG00000020892)	cenpk (ENSKMAG00000020916)	lbx1b (ENSKMAG00000020930)	slc2a15b (ENSKMAG00000020935)	fgf8b (ENSKMAG00000020954) #29	dpcd (ENSKMAG00000020966) #31
Turquoise killifish	MODERN SPECIES	1611	ENSNFUG00015001431	ENSNFUG00015001424	MAFG (ENSNFUG00015001418)	ENSNFUG00015001413	OLA.16066 (ENSNFUG00015001395)	ENSNFUG00015001375	aspscr1 (ENSNFUG00015001365)	TMC6 (ENSNFUG00015001312)	ENSNFUG00015001295	SYNGR2 (ENSNFUG00015001286)	tk1 (ENSNFUG00015001270)	AFMID (ENSNFUG00015001242)	CANT1 (ENSNFUG00015001232)	ENSNFUG00015001227 ##27	PPRC1 (ENSNFUG00015001224) #21	LDB1 (ENSNFUG00015001141) #22	armh3 (ENSNFUG00015001107) #24	KCNIP2 (ENSNFUG00015001093) #26	jupa (ENSNFUG00015001005)	ENSNFUG00015000872	ENSNFUG00015000845	krt99 (ENSNFUG00015000839)	krt15 (ENSNFUG00015000834)	krt98 (ENSNFUG00015000761)	krt98 (ENSNFUG00015000712)	ENSNFUG00015000705	krt94 (ENSNFUG00015000694)	SMAP1 (ENSNFUG00015000682)	ENSNFUG00015000676	lbx1b (ENSNFUG00015000669)	nt5c2b (ENSNFUG00015000542)
Cyprinodontoidei	ANCESTRAL SPECIES	15	ENSGT00390000004090	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #29	ENSGT00390000014031 #31
Poeciliinae	ANCESTRAL SPECIES	9	ENSGT00390000004090	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a.h	ENSGT00950000182969.B.c.a.a.a.g	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #29
Poecilia	ANCESTRAL SPECIES	6	ENSGT00390000004090	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00950000183052.b.c.b.b.a.a.a.b.c.a.a.c	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a.h	ENSGT00950000182969.B.c.a.a.a.g	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b
NAME_6	ANCESTRAL SPECIES	96	ENSGT00390000004090	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24
Sailfin molly	MODERN SPECIES	448	SIRT7 (ENSPLAG00000001609)	ENSPLAG00000001617	MAFG (ENSPLAG00000001625)	ENSPLAG00000001634	ENSPLAG00000001639	aspscr1 (ENSPLAG00000001645)	NOTUM (ENSPLAG00000001652)	TMC6 (ENSPLAG00000001666)	TMC8 (ENSPLAG00000001684)	syngr2b (ENSPLAG00000001696)	tk1 (ENSPLAG00000000687)	afmid (ENSPLAG00000001712)	cant1b (ENSPLAG00000001726)	ENSPLAG00000001755 ##27	si:dkey-93h22.8 (ENSPLAG00000001769) #21	ldb1b (ENSPLAG00000001779) #22	armh3 (ENSPLAG00000001809) #24
Amazon molly	MODERN SPECIES	506	ENSPFOG00000022440	MAFG (ENSPFOG00000002983)	ENSPFOG00000002863	ENSPFOG00000021992	aspscr1 (ENSPFOG00000002615)	NOTUM (ENSPFOG00000002456)	TMC6 (ENSPFOG00000002182)	TMC8 (ENSPFOG00000001925)	ENSPFOG00000024276	syngr2b (ENSPFOG00000024151)	tk1 (ENSPFOG00000001761)	afmid (ENSPFOG00000001639)	cant1b (ENSPFOG00000001512)	ENSPFOG00000001376 ##27	si:dkey-93h22.8 (ENSPFOG00000001320) #21	ldb1b (ENSPFOG00000001150) #22	armh3 (ENSPFOG00000000800) #24
Guppy	MODERN SPECIES	439	pcyt2 (ENSPREG00000000432)	ENSPREG00000000433	MAFG (ENSPREG00000000434)	ENSPREG00000000435	ENSPREG00000000436	aspscr1 (ENSPREG00000000437)	NOTUM (ENSPREG00000000438)	TMC6 (ENSPREG00000000439)	TMC8 (ENSPREG00000000440)	syngr2b (ENSPREG00000000441)	tk1 (ENSPREG00000000442)	afmid (ENSPREG00000000443)	cant1b (ENSPREG00000000444)	ENSPREG00000000445 ##27	si:dkey-93h22.8 (ENSPREG00000000446) #21	ldb1b (ENSPREG00000000447) #22	armh3 (ENSPREG00000000448) #24	ENSPREG00000000449	KCNIP2 (ENSPREG00000000450) #26	ENSPREG00000000451	jupa (ENSPREG00000000452)	ENSPREG00000000453	ENSPREG00000000454	krt99 (ENSPREG00000000455)	krt15 (ENSPREG00000000456)	krt98 (ENSPREG00000000457)	ENSPREG00000000458	krt94 (ENSPREG00000000459)	SMAP1 (ENSPREG00000000460)	cenpk (ENSPREG00000000461)	lbx1b (ENSPREG00000000462)
Platyfish	MODERN SPECIES	19	pcyt2 (ENSXMAG00000012951)	SIRT7 (ENSXMAG00000012959)	ENSXMAG00000026314	MAFG (ENSXMAG00000012964)	ENSXMAG00000012965	aspscr1 (ENSXMAG00000000292)	NOTUM (ENSXMAG00000023668)	TMC6 (ENSXMAG00000000278)	TMC8 (ENSXMAG00000000266)	syngr2b (ENSXMAG00000027054)	tk1 (ENSXMAG00000000253)	afmid (ENSXMAG00000000249)	cant1b (ENSXMAG00000000246)	ENSXMAG00000000245 ##27	si:dkey-93h22.8 (ENSXMAG00000000243) #21	ldb1b (ENSXMAG00000027796) #22	armh3 (ENSXMAG00000000219) #24	KCNIP2 (ENSXMAG00000000215) #26	ENSXMAG00000029713	ENSXMAG00000023553	jupa (ENSXMAG00000000209)	ENSXMAG00000025286	ENSXMAG00000000197	krt99 (ENSXMAG00000023618)	krt15 (ENSXMAG00000000173)	krt98 (ENSXMAG00000000157)	ENSXMAG00000025322	ENSXMAG00000023373	krt94 (ENSXMAG00000000155)	SMAP1 (ENSXMAG00000000144)	cenpk (ENSXMAG00000000139)
NAME_4	ANCESTRAL SPECIES	28	ENSGT00940000159703	ENSGT00390000004090	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #29	ENSGT00390000014031 #31
Sheepshead minnow	MODERN SPECIES	422	SIRT7 (ENSCVAG00000019953)	ENSCVAG00000019943	MAFG (ENSCVAG00000019929)	ENSCVAG00000019911	ENSCVAG00000019885	aspscr1 (ENSCVAG00000019879)	NOTUM (ENSCVAG00000000737)	TMC6 (ENSCVAG00000019814)	TMC8 (ENSCVAG00000019794)	syngr2b (ENSCVAG00000019785)	tk1 (ENSCVAG00000019778)	afmid (ENSCVAG00000019732)	cant1b (ENSCVAG00000019707)	ENSCVAG00000019679 ##27	si:dkey-93h22.8 (ENSCVAG00000019596) #21	ldb1b (ENSCVAG00000019587) #22	armh3 (ENSCVAG00000019564) #24	ENSCVAG00000019480 #26	jupa (ENSCVAG00000019461)	ENSCVAG00000019409	ENSCVAG00000019152	krt99 (ENSCVAG00000019139)	krt15 (ENSCVAG00000019131)	krt98 (ENSCVAG00000019102)	ENSCVAG00000000499	ENSCVAG00000019084	krt94 (ENSCVAG00000019039)	SMAP1 (ENSCVAG00000018803)	cenpk (ENSCVAG00000018796)	lbx1b (ENSCVAG00000018786)	slc2a15b (ENSCVAG00000018773)
Mummichog	MODERN SPECIES	375	ENSFHEG00000018733	MAFG (ENSFHEG00000018755)	ENSFHEG00000000669	ENSFHEG00000018790	ENSFHEG00000018798	aspscr1 (ENSFHEG00000018915)	NOTUM (ENSFHEG00000018956)	TMC6 (ENSFHEG00000018970)	TMC8 (ENSFHEG00000018980)	syngr2b (ENSFHEG00000018990)	tk1 (ENSFHEG00000019021)	afmid (ENSFHEG00000019033)	cant1b (ENSFHEG00000019061)	ENSFHEG00000019101 ##27	ENSFHEG00000019110 #21	ldb1b (ENSFHEG00000019148) #22	armh3 (ENSFHEG00000019214) #24
Ovalentaria_B	ANCESTRAL SPECIES	4	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #29	ENSGT00390000014031 #31
Cichlidae	ANCESTRAL SPECIES	3	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #29	ENSGT00390000014031 #31
Pseudocrenilabrinae	ANCESTRAL SPECIES	3	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000153212.p	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #29	ENSGT00390000014031 #31
Nile tilapia	MODERN SPECIES	18	ENSONIG00000018774	ENSONIG00000031715	ENSONIG00000040220	aspscr1 (ENSONIG00000018780)	NOTUM (ENSONIG00000018783)	TMC6 (ENSONIG00000018785)	TMC8 (ENSONIG00000018787)	ENSONIG00000037175	ENSONIG00000042508	syngr2b (ENSONIG00000018788)	tk1 (ENSONIG00000018789)	afmid (ENSONIG00000018792)	cant1b (ENSONIG00000018793)	ENSONIG00000018794 ##27	si:dkey-93h22.8 (ENSONIG00000033606) #21	ldb1b (ENSONIG00000018797) #22	armh3 (ENSONIG00000018799) #24	KCNIP2 (ENSONIG00000018800) #26	jupa (ENSONIG00000018803)	ENSONIG00000018805	krt98 (ENSONIG00000018810)	ENSONIG00000032121	krt99 (ENSONIG00000018806)	krt15 (ENSONIG00000037937)	krt94 (ENSONIG00000018807)	SMAP1 (ENSONIG00000018813)	cenpk (ENSONIG00000018814)	lbx1b (ENSONIG00000036425)	slc2a15b (ENSONIG00000018816)	fgf8b (ENSONIG00000031278) #29	ENSONIG00000035113
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	5	ENSGT00390000004090	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000153212.p	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #29	ENSGT00390000014031 #31
Haplochromini	ANCESTRAL SPECIES	3	ENSGT00390000004090	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000153212.p	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #29	ENSGT00390000014031.e.a #31
Burton s mouthbrooder	MODERN SPECIES	337	ENSHBUG00000019026	MAFG (ENSHBUG00000019029)	ENSHBUG00000019060	ENSHBUG00000019074	ENSHBUG00000019081	aspscr1 (ENSHBUG00000019095)	NOTUM (ENSHBUG00000019119)	TMC6 (ENSHBUG00000019143)	TMC8 (ENSHBUG00000019177)	syngr2b (ENSHBUG00000019197)	tk1 (ENSHBUG00000019236)	afmid (ENSHBUG00000019247)	cant1b (ENSHBUG00000019276)	ENSHBUG00000019327 ##27	si:dkey-93h22.8 (ENSHBUG00000019347) #21	ldb1b (ENSHBUG00000019378) #22	armh3 (ENSHBUG00000019565) #24	KCNIP2 (ENSHBUG00000019621) #26	jupa (ENSHBUG00000019714)	ENSHBUG00000000586	ENSHBUG00000019747	krt15 (ENSHBUG00000019759)	krt98 (ENSHBUG00000019771)	krt94 (ENSHBUG00000019853)	SMAP1 (ENSHBUG00000019912)	cenpk (ENSHBUG00000019922)	lbx1b (ENSHBUG00000019934)	slc2a15b (ENSHBUG00000019972)	fgf8b (ENSHBUG00000020004) #29	dpcd (ENSHBUG00000020045) #31	poll (ENSHBUG00000020101) #32
Haplochromini_A	ANCESTRAL SPECIES	2	ENSGT00390000004090	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000153212.p	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #29	ENSGT00390000014031.e.a #31
Haplochromini_B	ANCESTRAL SPECIES	23	ENSGT00390000004090	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000153212.p	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #29	ENSGT00390000014031.f #31
Eastern happy	MODERN SPECIES	18	ENSACLG00000020013	MAFG (ENSACLG00000019998)	ENSACLG00000019971	ENSACLG00000019960	ENSACLG00000019944	aspscr1 (ENSACLG00000019805)	NOTUM (ENSACLG00000019776)	TMC6 (ENSACLG00000019720)	TMC8 (ENSACLG00000019683)	syngr2b (ENSACLG00000019666)	tk1 (ENSACLG00000019632)	afmid (ENSACLG00000019597)	cant1b (ENSACLG00000019543)	ENSACLG00000019393 ##27	si:dkey-93h22.8 (ENSACLG00000019359) #21	ldb1b (ENSACLG00000019279) #22	armh3 (ENSACLG00000019143) #24	KCNIP2 (ENSACLG00000019119) #26	jupa (ENSACLG00000019071)	ENSACLG00000019016	ENSACLG00000019032	krt99 (ENSACLG00000019002)	krt15 (ENSACLG00000018979)	krt98 (ENSACLG00000018967)	krt94 (ENSACLG00000018950)	ENSACLG00000018945	SMAP1 (ENSACLG00000018925)	cenpk (ENSACLG00000018904)	lbx1b (ENSACLG00000018897)	slc2a15b (ENSACLG00000018850)	dpcd (ENSACLG00000018832) #31
Zebra mbuna	MODERN SPECIES	1109	ENSMZEG00005007948	MAFG (ENSMZEG00005007955)	ENSMZEG00005007964	ENSMZEG00005007974	ENSMZEG00005007980	aspscr1 (ENSMZEG00005007985)	NOTUM (ENSMZEG00005008014)	TMC6 (ENSMZEG00005008039)	TMC8 (ENSMZEG00005008074)	syngr2b (ENSMZEG00005008085)	tk1 (ENSMZEG00005008093)	afmid (ENSMZEG00005008119)	cant1b (ENSMZEG00005008140)	ENSMZEG00005008173 ##27	si:dkey-93h22.8 (ENSMZEG00005008228) #21	ldb1b (ENSMZEG00005008245) #22	armh3 (ENSMZEG00005008281) #24	KCNIP2 (ENSMZEG00005008364) #26	jupa (ENSMZEG00005008391)	ENSMZEG00005008443	ENSMZEG00005008461	krt99 (ENSMZEG00005008473)	krt15 (ENSMZEG00005008487)	krt98 (ENSMZEG00005008496)	krt94 (ENSMZEG00005008511)	SMAP1 (ENSMZEG00005008548)	cenpk (ENSMZEG00005008583)	lbx1b (ENSMZEG00005008600)	slc2a15b (ENSMZEG00005008607)	fgf8b (ENSMZEG00005008642) #29	dpcd (ENSMZEG00005008653) #31
P. nyererei	MODERN SPECIES	360	ENSPNYG00000002215	MAFG (ENSPNYG00000002228)	ENSPNYG00000002243	ENSPNYG00000002275	ENSPNYG00000002307	aspscr1 (ENSPNYG00000002321)	NOTUM (ENSPNYG00000002336)	TMC6 (ENSPNYG00000002422)	TMC8 (ENSPNYG00000002456)	syngr2b (ENSPNYG00000002480)	tk1 (ENSPNYG00000002489)	afmid (ENSPNYG00000002523)	cant1b (ENSPNYG00000002587)	ENSPNYG00000002625 ##27	si:dkey-93h22.8 (ENSPNYG00000002682) #21	ldb1b (ENSPNYG00000002704) #22	armh3 (ENSPNYG00000002768) #24	KCNIP2 (ENSPNYG00000002869) #26	jupa (ENSPNYG00000002908)	ENSPNYG00000002974	ENSPNYG00000003128	krt99 (ENSPNYG00000003158)	krt15 (ENSPNYG00000003167)	krt98 (ENSPNYG00000003181)	krt94 (ENSPNYG00000003207)	SMAP1 (ENSPNYG00000003337)	cenpk (ENSPNYG00000003376)	lbx1b (ENSPNYG00000003403)	slc2a15b (ENSPNYG00000003459)	fgf8b (ENSPNYG00000003504) #29	dpcd (ENSPNYG00000003582) #31
Lyretail cichlid	MODERN SPECIES	308	MAFG (ENSNBRG00000023654)	ENSNBRG00000023646	ENSNBRG00000023635	ENSNBRG00000023461	ENSNBRG00000023356	aspscr1 (ENSNBRG00000023333)	NOTUM (ENSNBRG00000023299)	TMC6 (ENSNBRG00000023281)	ENSNBRG00000023261	syngr2b (ENSNBRG00000023245)	tk1 (ENSNBRG00000023233)	afmid (ENSNBRG00000023215)	cant1b (ENSNBRG00000023191)	ENSNBRG00000023168 ##27	ENSNBRG00000023152 #21	ldb1b (ENSNBRG00000023119) #22	armh3 (ENSNBRG00000023092) #24	jupa (ENSNBRG00000023053)	ENSNBRG00000023010	ENSNBRG00000022987	krt15 (ENSNBRG00000022980)	krt98 (ENSNBRG00000022456)	krt94 (ENSNBRG00000022244)	SMAP1 (ENSNBRG00000022222)	cenpk (ENSNBRG00000022205)	lbx1b (ENSNBRG00000022180)	slc2a15b (ENSNBRG00000022146)	fgf8b (ENSNBRG00000022061) #29	dpcd (ENSNBRG00000022033) #31	poll (ENSNBRG00000022014) #32	wbp1lb (ENSNBRG00000021999)
Midas cichlid	MODERN SPECIES	1113	pcyt2 (ENSACIG00000008829)	SIRT7 (ENSACIG00000008760)	MAFG (ENSACIG00000008743)	ENSACIG00000008721	ENSACIG00000008706	ENSACIG00000008695	aspscr1 (ENSACIG00000008662)	NOTUM (ENSACIG00000008639)	TMC6 (ENSACIG00000008608)	TMC8 (ENSACIG00000008565)	syngr2b (ENSACIG00000008502)	tk1 (ENSACIG00000008324)	afmid (ENSACIG00000008288)	cant1b (ENSACIG00000008270)	ENSACIG00000008238 ##27	ldb1b (ENSACIG00000008206) #22	armh3 (ENSACIG00000008152) #24	KCNIP2 (ENSACIG00000008119) #26	jupa (ENSACIG00000008093)	ENSACIG00000008033	ENSACIG00000008017	krt15 (ENSACIG00000007504)	krt98 (ENSACIG00000007137)	krt94 (ENSACIG00000007065)	smap1 (ENSACIG00000007041)	cenpk (ENSACIG00000007018)	lbx1b (ENSACIG00000007010)	slc2a15b (ENSACIG00000006971)	fgf8b (ENSACIG00000006920) #29	dpcd (ENSACIG00000006893) #31	poll (ENSACIG00000006868) #32
Pomacentridae	ANCESTRAL SPECIES	20	ENSGT00940000159703	ENSGT00390000004090	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #29	ENSGT00390000014031 #31
Pomacentridae_A	ANCESTRAL SPECIES	13	ENSGT00940000159703	ENSGT00390000004090	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #29	ENSGT00390000014031 #31
Amphiprion	ANCESTRAL SPECIES		ENSGT00940000159703	ENSGT00390000004090	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #29	ENSGT00390000014031 #31
Orange clownfish	MODERN SPECIES	17	MAFG (ENSAPEG00000014143)	ENSAPEG00000014166	ENSAPEG00000014189	ENSAPEG00000014198	aspscr1 (ENSAPEG00000014220)	NOTUM (ENSAPEG00000014253)	TMC6 (ENSAPEG00000014297)	TMC8 (ENSAPEG00000014347)	ENSAPEG00000014415	syngr2b (ENSAPEG00000014445)	tk1 (ENSAPEG00000014473)	afmid (ENSAPEG00000014484)	cant1b (ENSAPEG00000014521)	ENSAPEG00000014551 ##27	si:dkey-93h22.8 (ENSAPEG00000014568) #21	ldb1b (ENSAPEG00000014581) #22	armh3 (ENSAPEG00000014610) #24	ENSAPEG00000014715	ENSAPEG00000014736	ENSAPEG00000014752	ENSAPEG00000014774	ENSAPEG00000014796	ENSAPEG00000014813	ENSAPEG00000014924	ENSAPEG00000014936	ENSAPEG00000014943	ENSAPEG00000014962	dpy30 (ENSAPEG00000014984)	srd5a2a (ENSAPEG00000015026)	TMEM63B (ENSAPEG00000015116)	kat14 (ENSAPEG00000015176)
Clown anemonefish	MODERN SPECIES	2109	ENSAOCG00000007744	MAFG (ENSAOCG00000001872)	ENSAOCG00000007797	ENSAOCG00000007811	aspscr1 (ENSAOCG00000007840)	NOTUM (ENSAOCG00000007882)	TMC6 (ENSAOCG00000007917)	ENSAOCG00000000448	TMC8 (ENSAOCG00000007991)	syngr2b (ENSAOCG00000008007)	tk1 (ENSAOCG00000008013)	afmid (ENSAOCG00000008051)	cant1b (ENSAOCG00000008085)	ENSAOCG00000008119 ##27	si:dkey-93h22.8 (ENSAOCG00000008140) #21	ldb1b (ENSAOCG00000008172) #22	armh3 (ENSAOCG00000008250) #24
Spiny chromis	MODERN SPECIES	26	SIRT7 (ENSAPOG00000010057)	ENSAPOG00000010085	MAFG (ENSAPOG00000010112)	ENSAPOG00000010152	ENSAPOG00000010174	aspscr1 (ENSAPOG00000010186)	NOTUM (ENSAPOG00000010235)	TMC6 (ENSAPOG00000010264)	TMC8 (ENSAPOG00000010370)	syngr2b (ENSAPOG00000010381)	tk1 (ENSAPOG00000010390)	afmid (ENSAPOG00000010397)	cant1b (ENSAPOG00000010438)	ENSAPOG00000010513 ##27	si:dkey-93h22.8 (ENSAPOG00000001094) #21	ldb1b (ENSAPOG00000010548) #22	armh3 (ENSAPOG00000000943) #24	KCNIP2 (ENSAPOG00000010714) #26	jupa (ENSAPOG00000010772)	ENSAPOG00000010819	ENSAPOG00000010890	krt99 (ENSAPOG00000010904)	krt15 (ENSAPOG00000010913)	krt98 (ENSAPOG00000010924)
Bicolor damselfish	MODERN SPECIES	239	ENSSPAG00000012010	ENSSPAG00000012007	ENSSPAG00000011997	rab11fip4b (ENSSPAG00000011975)	utp6 (ENSSPAG00000011871)	suz12b (ENSSPAG00000010969)	ENSSPAG00000010842	tefm (ENSSPAG00000010830)	ADAP2 (ENSSPAG00000010813)	syngr2b (ENSSPAG00000010794)	tk1 (ENSSPAG00000010781)	afmid (ENSSPAG00000010761)	cant1b (ENSSPAG00000010710)	ENSSPAG00000010634 ##27	si:dkey-93h22.8 (ENSSPAG00000010602) #21	ldb1b (ENSSPAG00000010516) #22
Percomorphaceae_C	ANCESTRAL SPECIES	3	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #29	ENSGT00390000014031 #31
Eupercaria	ANCESTRAL SPECIES	2	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #29	ENSGT00390000014031 #31
Tetraodontidae	ANCESTRAL SPECIES																	ENSGT00390000005639.a.b.d.b #22
Fugu	DUPLICATION
Fugu	MODERN SPECIES	8	ENSTRUG00000032773	DDX5 (ENSTRUG00000002356)	ENSTRUG00000025514	ENSTRUG00000027199	srp68 (ENSTRUG00000002749)	ten1 (ENSTRUG00000021534)	acox1 (ENSTRUG00000033106)	RHBDF2 (ENSTRUG00000002805)	aanat1 (ENSTRUG00000017502)	UBE2O (ENSTRUG00000026213)	ttc26 (ENSTRUG00000031838)	ENSTRUG00000027021	ENSTRUG00000032014	ldb1b (ENSTRUG00000027693) #22	armh3 (ENSTRUG00000000380) #24	ldb1b (ENSTRUG00000026189) #22	ENSTRUG00000025109	slc25a38b (ENSTRUG00000007084)	ttc26 (ENSTRUG00000033273)	ENSTRUG00000019884	ENSTRUG00000020415	ubn2a (ENSTRUG00000032576)	grin2bb (ENSTRUG00000032790)	si:ch211-243a20.3 (ENSTRUG00000021183)	f8a (ENSTRUG00000003080)	emp1 (ENSTRUG00000029776)	ENSTRUG00000025478	rbfox2 (ENSTRUG00000027524)	pde6ha (ENSTRUG00000030117)	ENSTRUG00000033186	ENSTRUG00000032370
Fugu	MODERN SPECIES	8	pde6ha (ENSTRUG00000030117)	rbfox2 (ENSTRUG00000027524)	ENSTRUG00000025478	emp1 (ENSTRUG00000029776)	f8a (ENSTRUG00000003080)	si:ch211-243a20.3 (ENSTRUG00000021183)	grin2bb (ENSTRUG00000032790)	ubn2a (ENSTRUG00000032576)	ENSTRUG00000020415	ENSTRUG00000019884	ttc26 (ENSTRUG00000033273)	slc25a38b (ENSTRUG00000007084)	ENSTRUG00000025109	ldb1b (ENSTRUG00000026189) #22	armh3 (ENSTRUG00000000380) #24	ldb1b (ENSTRUG00000027693) #22	ENSTRUG00000032014	ENSTRUG00000027021	ttc26 (ENSTRUG00000031838)	UBE2O (ENSTRUG00000026213)	aanat1 (ENSTRUG00000017502)	RHBDF2 (ENSTRUG00000002805)	acox1 (ENSTRUG00000033106)	ten1 (ENSTRUG00000021534)	srp68 (ENSTRUG00000002749)	ENSTRUG00000027199	ENSTRUG00000025514	DDX5 (ENSTRUG00000002356)	ENSTRUG00000032773	ENSTRUG00000028957	QPRT (ENSTRUG00000001650)
Tetraodon	MODERN SPECIES	26	srp68 (ENSTNIG00000017512)	evpla (ENSTNIG00000017513)	acox1 (ENSTNIG00000017514)	acox1 (ENSTNIG00000000932)	RHBDF2 (ENSTNIG00000017515)	aanat1 (ENSTNIG00000017516)	UBE2O (ENSTNIG00000017517)	SPHK1 (ENSTNIG00000017518)	cygb2 (ENSTNIG00000017519)	ENSTNIG00000017520	ENSTNIG00000000723	ubn2a (ENSTNIG00000017521)	ttc26 (ENSTNIG00000017522)	slc25a38b (ENSTNIG00000017523)	ENSTNIG00000017524 ##27	ldb1b (ENSTNIG00000004861) #22	armh3 (ENSTNIG00000004862) #24	jupa (ENSTNIG00000004863)	ENSTNIG00000004864	krt15 (ENSTNIG00000004865)	klf5l (ENSTNIG00000004691)	klf8 (ENSTNIG00000004690)	rbm41 (ENSTNIG00000004692)	cldn2 (ENSTNIG00000004693)	CLIP2 (ENSTNIG00000004694)	GTF2IRD1 (ENSTNIG00000004695)	dtx2 (ENSTNIG00000004696)	tmem132e (ENSTNIG00000010268)	rad51d (ENSTNIG00000010269)	lig3 (ENSTNIG00000010270)	DOC2B (ENSTNIG00000010271)
Eupecaria_A	ANCESTRAL SPECIES	3	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #29	ENSGT00390000014031 #31
Eupecaria_B	ANCESTRAL SPECIES	1	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #29	ENSGT00390000014031 #31
Perciformes	ANCESTRAL SPECIES	2	ENSGT00390000004090	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #29	ENSGT00390000014031 #31
Perciformes_a	ANCESTRAL SPECIES		ENSGT00980000203398	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #29	ENSGT00390000014031 #31
Pike perch	MODERN SPECIES	8	ENSSLUG00000011877	MAFG (ENSSLUG00000011872)	ENSSLUG00000011839	ENSSLUG00000011837	aspscr1 (ENSSLUG00000011832)	NOTUM (ENSSLUG00000011812)	TMC6 (ENSSLUG00000011795)	TMC8 (ENSSLUG00000011774)	ENSSLUG00000011757	syngr2b (ENSSLUG00000011754)	tk1 (ENSSLUG00000011746)	afmid (ENSSLUG00000011671)	cant1b (ENSSLUG00000011655)	ENSSLUG00000011643 ##27	ENSSLUG00000011635 #21	ldb1b (ENSSLUG00000011064) #22	armh3 (ENSSLUG00000010972) #24	ENSSLUG00000010956	KCNIP2 (ENSSLUG00000010934) #26	jupa (ENSSLUG00000010039)	ENSSLUG00000009988	ENSSLUG00000009982	krt99 (ENSSLUG00000009950)	krt15 (ENSSLUG00000009939)	krt98 (ENSSLUG00000009937)	ENSSLUG00000009915	krt98 (ENSSLUG00000009869)	krt94 (ENSSLUG00000009847)	SMAP1 (ENSSLUG00000009833)	cenpk (ENSSLUG00000009823)	lbx1b (ENSSLUG00000009812)
Channel bull blenny	MODERN SPECIES		ENSCGOG00000002313	ENSCGOG00000002317	MAFG (ENSCGOG00000002319)	ENSCGOG00000002322	ENSCGOG00000002369	aspscr1 (ENSCGOG00000002377)	NOTUM (ENSCGOG00000002389)	TMC6 (ENSCGOG00000002418)	TMC8 (ENSCGOG00000002433)	syngr2b (ENSCGOG00000002442)	tk1 (ENSCGOG00000002445)	afmid (ENSCGOG00000002460)	cant1b (ENSCGOG00000002471)	ENSCGOG00000002474 ##27	si:dkey-93h22.8 (ENSCGOG00000002491) #21	ldb1b (ENSCGOG00000002517) #22	armh3 (ENSCGOG00000003464) #24	KCNIP2 (ENSCGOG00000003983) #26	jupa (ENSCGOG00000004237)	ENSCGOG00000007811	ENSCGOG00000007818	krt99 (ENSCGOG00000007820)	krt15 (ENSCGOG00000007877)	krt98 (ENSCGOG00000007897)	krt94 (ENSCGOG00000007899)	SMAP1 (ENSCGOG00000007902)	cenpk (ENSCGOG00000007910)	lbx1b (ENSCGOG00000007915)	slc2a15b (ENSCGOG00000007928)	fgf8b (ENSCGOG00000008193) #29	dpcd (ENSCGOG00000008201) #31
Cottioidei	ANCESTRAL SPECIES	3	ENSGT00390000004090	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #29	ENSGT00390000014031 #31
Lumpfish	MODERN SPECIES		aspscr1 (ENSCLMG00005014918)	NOTUM (ENSCLMG00005014926)	ENSCLMG00005014933	ENSCLMG00005014935	tk1 (ENSCLMG00005014937)	ENSCLMG00005014938 ##27	cant1b (ENSCLMG00005014939)	afmid (ENSCLMG00005014941)	tk1 (ENSCLMG00005014944)	syngr2b (ENSCLMG00005014946)	ENSCLMG00005014947	ENSCLMG00005014948	cant1b (ENSCLMG00005014949)	ENSCLMG00005014950 ##27	si:dkey-93h22.8 (ENSCLMG00005014957) #21	ldb1b (ENSCLMG00005014963) #22	armh3 (ENSCLMG00005014981) #24	KCNIP2 (ENSCLMG00005015013) #26	jupa (ENSCLMG00005015158)	ENSCLMG00005015793	ENSCLMG00005016353	krt99 (ENSCLMG00005016355)	krt15 (ENSCLMG00005016356)	krt15 (ENSCLMG00005016364)	krt15 (ENSCLMG00005016371)	krt98 (ENSCLMG00005016373)	krt94 (ENSCLMG00005016389)	SMAP1 (ENSCLMG00005000004)	cenpk (ENSCLMG00005000017)	lbx1b (ENSCLMG00005000027)	slc2a15b (ENSCLMG00005000030)
Stickleback	MODERN SPECIES	4	ENSGACG00000018380	pi4k2b (ENSGACG00000018377)	htra3a (ENSGACG00000018376)	CPZ (ENSGACG00000018366)	hmx4 (ENSGACG00000018365)	adra2c (ENSGACG00000018364)	lrpap1 (ENSGACG00000018360)	DOK7 (ENSGACG00000018358)	rgs12b (ENSGACG00000018356)	htt (ENSGACG00000018347)	grk4 (ENSGACG00000018346)	cant1b (ENSGACG00000018345)	ENSGACG00000018341 ##27	ENSGACG00000018339 #21	ENSGACG00000018338	ldb1b (ENSGACG00000018336) #22	armh3 (ENSGACG00000018333) #24	KCNIP2 (ENSGACG00000018330) #26	jupa (ENSGACG00000018328)	ENSGACG00000018327	ENSGACG00000018326	krt99 (ENSGACG00000018321)	krt15 (ENSGACG00000018310)	krt98 (ENSGACG00000018303)	krt94 (ENSGACG00000018299)	SMAP1 (ENSGACG00000018297)	cenpk (ENSGACG00000018295)	lbx1b (ENSGACG00000018293)	slc2a15b (ENSGACG00000018278)	fgf8b (ENSGACG00000018276) #29	dpcd (ENSGACG00000018274) #31
Eupecaria_C	ANCESTRAL SPECIES	22	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #29	ENSGT00390000014031 #31
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	21	ENSGT00390000004090	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #29	ENSGT00390000014031 #31	ENSGT00940000158515 #32
European seabass	MODERN SPECIES	20	ENSDLAG00005011862	ENSDLAG00005029633	ENSDLAG00005011813	ENSDLAG00005030103	aspscr1 (ENSDLAG00005025150)	ENSDLAG00005025069	TMC6 (ENSDLAG00005025047)	TMC8 (ENSDLAG00005028642)	ENSDLAG00005025036	syngr2b (ENSDLAG00005033299)	tk1 (ENSDLAG00005030785)	afmid (ENSDLAG00005034245)	cant1b (ENSDLAG00005029318)	ENSDLAG00005025007 ##27	si:dkey-93h22.8 (ENSDLAG00005028092) #21	ldb1b (ENSDLAG00005024961) #22	ARMH3 (ENSDLAG00005024926) #24	KCNIP2 (ENSDLAG00005031164) #26	jupa (ENSDLAG00005024780)	ENSDLAG00005024684	ENSDLAG00005024681	krt99 (ENSDLAG00005024665)	krt15 (ENSDLAG00005024650)	krt98 (ENSDLAG00005029695)	krt94 (ENSDLAG00005024613)	ENSDLAG00005024602	lbx1b (ENSDLAG00005026330)	slc2a15b (ENSDLAG00005024529)	fgf8b (ENSDLAG00005034123) #29	dpcd (ENSDLAG00005024508) #31	poll (ENSDLAG00005024503) #32
Large yellow croaker	MODERN SPECIES	481	ENSLCRG00005022214	ENSLCRG00005022216	MAFG (ENSLCRG00005022217)	ENSLCRG00005002396	ENSLCRG00005002411	aspscr1 (ENSLCRG00005002423)	NOTUM (ENSLCRG00005002461)	TMC6 (ENSLCRG00005003214)	TMC8 (ENSLCRG00005003218)	syngr2b (ENSLCRG00005003224)	tk1 (ENSLCRG00005003228)	afmid (ENSLCRG00005003233)	cant1b (ENSLCRG00005003240)	ENSLCRG00005003245 ##27	si:dkey-93h22.8 (ENSLCRG00005003250) #21	ldb1b (ENSLCRG00005003254) #22	armh3 (ENSLCRG00005003267) #24	KCNIP2 (ENSLCRG00005003351) #26	jupa (ENSLCRG00005003367)	ENSLCRG00005003733	ENSLCRG00005003767	krt99 (ENSLCRG00005003768)	krt98 (ENSLCRG00005003770)	krt15 (ENSLCRG00005003773)	krt94 (ENSLCRG00005003776)	SMAP1 (ENSLCRG00005003780)	lbx1b (ENSLCRG00005003783)	slc2a15b (ENSLCRG00005003787)	fgf8b (ENSLCRG00005003796) #29	dpcd (ENSLCRG00005003799) #31	poll (ENSLCRG00005003801) #32
Gilthead seabream	MODERN SPECIES		ENSSAUG00010001081	aspscr1 (ENSSAUG00010001083)	NOTUM (ENSSAUG00010001089)	TMC6 (ENSSAUG00010001095)	TMC8 (ENSSAUG00010001103)	ENSSAUG00010001110	ENSSAUG00010001115	syngr2b (ENSSAUG00010001118)	tk1 (ENSSAUG00010001120)	afmid (ENSSAUG00010001124)	cant1b (ENSSAUG00010001126)	ENSSAUG00010001132 ##27	ENSSAUG00010001136	ENSSAUG00010001140	si:dkey-93h22.8 (ENSSAUG00010001142) #21	ldb1b (ENSSAUG00010001148) #22	armh3 (ENSSAUG00010001174) #24	KCNIP2 (ENSSAUG00010001214) #26	jupa (ENSSAUG00010001232)	ENSSAUG00010002410	ENSSAUG00010002849	krt99 (ENSSAUG00010002863)	krt15 (ENSSAUG00010002881)	krt98 (ENSSAUG00010002917)	SMAP1 (ENSSAUG00010003003)	cenpk (ENSSAUG00010003014)	lbx1b (ENSSAUG00010003024)	slc2a15b (ENSSAUG00010003054)	fgf8b (ENSSAUG00010003246) #29	dpcd (ENSSAUG00010003248) #31	poll (ENSSAUG00010003250) #32
Ballan wrasse	MODERN SPECIES	773										syngr2b (ENSLBEG00000023773)	tk1 (ENSLBEG00000023874)	afmid (ENSLBEG00000023920)	cant1b (ENSLBEG00000023965)	ENSLBEG00000023997 ##27	si:dkey-93h22.8 (ENSLBEG00000024075) #21	ldb1b (ENSLBEG00000024140) #22	armh3 (ENSLBEG00000024242) #24
Percomorphaceae_D	ANCESTRAL SPECIES		ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #29	ENSGT00390000014031 #31
Anabantaria	ANCESTRAL SPECIES	1	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #29	ENSGT00390000014031 #31
Anabantoidei	ANCESTRAL SPECIES		ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #29	ENSGT00390000014031 #31
Siamese fighting fish	MODERN SPECIES		tk1 (ENSBSLG00000001565)	syngr2b (ENSBSLG00000001559)	TMC8 (ENSBSLG00000001548)	TMC6 (ENSBSLG00000001526)	NOTUM (ENSBSLG00000001513)	aspscr1 (ENSBSLG00000001504)	ENSBSLG00000001498	ENSBSLG00000001474	MAFG (ENSBSLG00000001443)	ENSBSLG00000001430	SIRT7 (ENSBSLG00000001364)	afmid (ENSBSLG00000001322)	cant1b (ENSBSLG00000001309)	ENSBSLG00000001281 ##27	si:dkey-93h22.8 (ENSBSLG00000001254) #21	ldb1b (ENSBSLG00000001219) #22	armh3 (ENSBSLG00000000791) #24	KCNIP2 (ENSBSLG00000000751) #26	jupa (ENSBSLG00000000630)	ENSBSLG00000000502	ENSBSLG00000000461	krt99 (ENSBSLG00000000440)	krt98 (ENSBSLG00000000226)	krt15 (ENSBSLG00000000117)	SMAP1 (ENSBSLG00000006854)	cenpk (ENSBSLG00000006834)	lbx1b (ENSBSLG00000006829)	slc2a15b (ENSBSLG00000006540)	fgf8b (ENSBSLG00000006445) #29	dpcd (ENSBSLG00000006378) #31	poll (ENSBSLG00000006326) #32
Climbing perch	MODERN SPECIES		ENSATEG00000019873	ENSATEG00000019897	aspscr1 (ENSATEG00000019927)	ENSATEG00000019940	TMC6 (ENSATEG00000019964)	TMC8 (ENSATEG00000020004)	TMC8 (ENSATEG00000028212)	ENSATEG00000027348	ENSATEG00000027769	syngr2b (ENSATEG00000029117)	tk1 (ENSATEG00000020084)	afmid (ENSATEG00000020116)	cant1b (ENSATEG00000020130)	ENSATEG00000020161 ##27	ENSATEG00000020218 #21	ldb1b (ENSATEG00000020230) #22	ARMH3 (ENSATEG00000020255) #24	KCNIP2 (ENSATEG00000020347) #26	jupa (ENSATEG00000020387)	ENSATEG00000020436	ENSATEG00000020511	krt99 (ENSATEG00000020521)	krt15 (ENSATEG00000020542)	krt98 (ENSATEG00000020567)	krt94 (ENSATEG00000020591)	ENSATEG00000020598	cenpk (ENSATEG00000020632)	lbx1b (ENSATEG00000020642)	slc2a15b (ENSATEG00000020655)	fgf8b (ENSATEG00000028269) #29	dpcd (ENSATEG00000020802) #31
Zig-zag eel	MODERN SPECIES		ENSMAMG00000011439	MAFG (ENSMAMG00000011427)	ENSMAMG00000011403	MYADML2 (ENSMAMG00000026044)	aspscr1 (ENSMAMG00000011385)	ENSMAMG00000011354	TMC6 (ENSMAMG00000011348)	TMC8 (ENSMAMG00000011290)	ENSMAMG00000026199	syngr2b (ENSMAMG00000011259)	tk1 (ENSMAMG00000011249)	afmid (ENSMAMG00000011213)	cant1b (ENSMAMG00000024398)	ENSMAMG00000011193 ##27	si:dkey-93h22.8 (ENSMAMG00000011169) #21	ldb1b (ENSMAMG00000011142) #22	ARMH3 (ENSMAMG00000011040) #24	KCNIP2 (ENSMAMG00000011011) #26	jupa (ENSMAMG00000010941)	ENSMAMG00000010892	ENSMAMG00000010885	krt99 (ENSMAMG00000010847)	krt15 (ENSMAMG00000010835)	krt98 (ENSMAMG00000010267)	krt94 (ENSMAMG00000010209)	ENSMAMG00000010206	cenpk (ENSMAMG00000010189)	lbx1b (ENSMAMG00000010182)	fgf8b (ENSMAMG00000024638) #29	dpcd (ENSMAMG00000009826) #31	poll (ENSMAMG00000009780) #32
Carangaria	ANCESTRAL SPECIES		ENSGT00390000004090	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #29	ENSGT00390000014031 #31
Carangaria_A	ANCESTRAL SPECIES	24	ENSGT00390000004090	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #29	ENSGT00390000014031 #31
Seriola	ANCESTRAL SPECIES	11	ENSGT00940000159703	ENSGT00390000004090	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #29	ENSGT00390000014031 #31
Greater amberjack	MODERN SPECIES	84	pcyt2 (ENSSDUG00000001820)	SIRT7 (ENSSDUG00000001789)	MAFG (ENSSDUG00000001779)	ENSSDUG00000001749	ENSSDUG00000001716	aspscr1 (ENSSDUG00000001678)	NOTUM (ENSSDUG00000001646)	TMC6 (ENSSDUG00000001594)	TMC8 (ENSSDUG00000001533)	syngr2b (ENSSDUG00000001485)	tk1 (ENSSDUG00000001455)	afmid (ENSSDUG00000001414)	cant1b (ENSSDUG00000001389)	ENSSDUG00000001303 ##27	si:dkey-93h22.8 (ENSSDUG00000001268) #21	ldb1b (ENSSDUG00000001247) #22	armh3 (ENSSDUG00000001167) #24	KCNIP2 (ENSSDUG00000001121) #26	jupa (ENSSDUG00000001059)	ENSSDUG00000000985	ENSSDUG00000000957	krt99 (ENSSDUG00000000457)	krt15 (ENSSDUG00000000355)	krt98 (ENSSDUG00000000282)	krt94 (ENSSDUG00000000267)	SMAP1 (ENSSDUG00000000217)	cenpk (ENSSDUG00000000210)	lbx1b (ENSSDUG00000000191)	slc2a15b (ENSSDUG00000000101)	fgf8b (ENSSDUG00000021510) #29	dpcd (ENSSDUG00000021500) #31
Yellowtail amberjack	MODERN SPECIES	3041	SIRT7 (ENSSLDG00000012403)	ENSSLDG00000012375	MAFG (ENSSLDG00000012357)	ENSSLDG00000012331	ENSSLDG00000012314	aspscr1 (ENSSLDG00000012283)	NOTUM (ENSSLDG00000012241)	TMC6 (ENSSLDG00000012223)	TMC8 (ENSSLDG00000012181)	syngr2b (ENSSLDG00000012174)	tk1 (ENSSLDG00000012141)	afmid (ENSSLDG00000012120)	cant1b (ENSSLDG00000012095)	ENSSLDG00000012042 ##27	si:dkey-93h22.8 (ENSSLDG00000012010) #21	ldb1b (ENSSLDG00000011963) #22	armh3 (ENSSLDG00000011864) #24	KCNIP2 (ENSSLDG00000011824) #26	jupa (ENSSLDG00000011768)	ENSSLDG00000011569	ENSSLDG00000011518	krt99 (ENSSLDG00000011125)	krt15 (ENSSLDG00000011011)	krt98 (ENSSLDG00000010975)	krt94 (ENSSLDG00000010940)	SMAP1 (ENSSLDG00000010906)	cenpk (ENSSLDG00000010881)	lbx1b (ENSSLDG00000010867)	slc2a15b (ENSSLDG00000010809)	fgf8b (ENSSLDG00000010661) #29	dpcd (ENSSLDG00000010604) #31
Barramundi perch	MODERN SPECIES	123	ENSLCAG00010005390	MAFG (ENSLCAG00010005385)	ENSLCAG00010005350	ENSLCAG00010005338	CACNA1H (ENSLCAG00010005311)	aspscr1 (ENSLCAG00010005295)	NOTUM (ENSLCAG00010005289)	TMC6 (ENSLCAG00010005217)	ENSLCAG00010005188	ENSLCAG00010005174	syngr2b (ENSLCAG00010005173)	tk1 (ENSLCAG00010005161)	afmid (ENSLCAG00010005154)	cant1b (ENSLCAG00010005148)	ENSLCAG00010005143 ##27	ldb1b (ENSLCAG00010004959) #22	armh3 (ENSLCAG00010004845) #24	KCNIP2 (ENSLCAG00010004262) #26	jupa (ENSLCAG00010004132)	ENSLCAG00010004050	ENSLCAG00010004025	krt99 (ENSLCAG00010004003)	krt15 (ENSLCAG00010003939)	krt98 (ENSLCAG00010003920)	krt94 (ENSLCAG00010003907)	SMAP1 (ENSLCAG00010003899)	cenpk (ENSLCAG00010003895)	lbx1b (ENSLCAG00010003893)	slc2a15b (ENSLCAG00010003888)	fgf8b (ENSLCAG00010003879) #29	dpcd (ENSLCAG00010003873) #31
Pleuronectoidei	ANCESTRAL SPECIES	22	ENSGT00550000075065.b	ENSGT00940000159703	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #29	ENSGT00390000014031 #31
Turbot	MODERN SPECIES	20	SIRT7 (ENSSMAG00000005491)	ENSSMAG00000022806	MAFG (ENSSMAG00000028574)	ENSSMAG00000005576	ENSSMAG00000005606	aspscr1 (ENSSMAG00000005618)	ENSSMAG00000005689	TMC6 (ENSSMAG00000005712)	TMC8 (ENSSMAG00000005735)	ENSSMAG00000024985	syngr2b (ENSSMAG00000005745)	tk1 (ENSSMAG00000005773)	afmid (ENSSMAG00000005807)	cant1b (ENSSMAG00000005832)	ENSSMAG00000005860 ##27	ldb1b (ENSSMAG00000005937) #22	ENSSMAG00000006048 #24	KCNIP2 (ENSSMAG00000006111) #26	jupa (ENSSMAG00000006134)	ENSSMAG00000006168	ENSSMAG00000006186	krt99 (ENSSMAG00000006200)	krt15 (ENSSMAG00000006227)	krt98 (ENSSMAG00000006243)	krt94 (ENSSMAG00000006254)	ENSSMAG00000006263	cenpk (ENSSMAG00000006290)	lbx1b (ENSSMAG00000036098)	poll (ENSSMAG00000006388) #32	slc2a15b (ENSSMAG00000006312)	fgf8b (ENSSMAG00000006337) #29
Tongue sole	MODERN SPECIES	19	ENSCSEG00000016329	PLA2G12B (ENSCSEG00000016322)	scrn2 (ENSCSEG00000016312)	sp6 (ENSCSEG00000016307)	cwc25 (ENSCSEG00000016305)	psmb3 (ENSCSEG00000016289)	PIP4K2B (ENSCSEG00000016276)	PCGF2 (ENSCSEG00000016264)	ENSCSEG00000016258	ENSCSEG00000016247	aspscr1 (ENSCSEG00000016235)	ENSCSEG00000016228	ENSCSEG00000016224	tk1 (ENSCSEG00000016219)	afmid (ENSCSEG00000016202)	ldb1b (ENSCSEG00000016177) #22	armh3 (ENSCSEG00000016153) #24	jupa (ENSCSEG00000016113)	ENSCSEG00000016091	krt15 (ENSCSEG00000016076)	krt98 (ENSCSEG00000016068)	krt94 (ENSCSEG00000016058)	ENSCSEG00000016041	cenpk (ENSCSEG00000016029)	lbx1b (ENSCSEG00000016019)	slc2a15b (ENSCSEG00000016002)	asah1b (ENSCSEG00000015956)	frg1 (ENSCSEG00000015950)	fat1a (ENSCSEG00000015927)	mtnr1aa (ENSCSEG00000015868)	cyp4v2a (ENSCSEG00000015855)
Cod	MODERN SPECIES	16	ENSGMOG00000030572	ENSGMOG00000032471	ENSGMOG00000028303	ENSGMOG00000033452	ENSGMOG00000012279	ENSGMOG00000033147	ENSGMOG00000004570	ENSGMOG00000027881	ENSGMOG00000033099	ENSGMOG00000025929	ENSGMOG00000033307	CALHM1 (ENSGMOG00000033306)	zgc:175214 (ENSGMOG00000027235)	pdcd11 (ENSGMOG00000004186)	taf5 (ENSGMOG00000004274)	LDB1 (ENSGMOG00000019523) #22	ENSGMOG00000019516 #24	KCNIP2 (ENSGMOG00000019514) #26	jupa (ENSGMOG00000019511)	ENSGMOG00000019513	ENSGMOG00000030774	ENSGMOG00000037060	ENSGMOG00000031187	krt98 (ENSGMOG00000012962)	krt94 (ENSGMOG00000014102)	ENSGMOG00000025967	ENSGMOG00000000026	ENSGMOG00000010976	ENSGMOG00000035670	ENSGMOG00000016213	ENSGMOG00000015766
Protacanthopterygii	ANCESTRAL SPECIES	67	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00940000161847.b.a.e.a.b.b	ENSGT00950000183127.c.b.d.a.a.a	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b #26	ENSGT00390000002223	ENSGT00390000008454
Salmoninae	ANCESTRAL SPECIES	14	ENSGT00940000156853.p.a.a.a	ENSGT00390000015892.a.c	ENSGT01050000244894.b.b.d.a.f.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093.d.a	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00950000183127.c.b.d.a.a.a.e.a	ENSGT00940000161847.b.a.e.a.b.b	ENSGT00950000183127.c.b.d.a.a.a.f	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b.e #26	ENSGT00970000194718.b.b.a.b.b	ENSGT00940000157331.b.a	ENSGT00940000157322.b.b	ENSGT00940000162611.a.a.a.b	ENSGT00940000162611.b	ENSGT00730000111173.h	ENSGT00530000063604.A.d.a	ENSGT00940000157525.a.d	ENSGT00950000183082.b.b.a.b.d.a.a	ENSGT00940000157556.a.a	ENSGT00940000157049.d.c	ENSGT01100000263540.B.c	ENSGT00390000007125.a.d
Huchen	DUPLICATION
Huchen	MODERN SPECIES	7313																ldb1b (ENSHHUG00000018622) #22
Huchen	MODERN SPECIES	6277																ldb1b (ENSHHUG00000021486) #22
Salmoninae_a	ANCESTRAL SPECIES	33	ENSGT00940000156853.o	ENSGT00390000015892.a.c	ENSGT01050000244894.b.b.d.a.f.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093.d.a	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00950000183127.c.b.d.a.a.a.e.a	ENSGT00940000161847.b.a.e.a.b.b	ENSGT00950000183127.c.b.d.a.a.a.f	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b.e #26	ENSGT00970000194718.b.b.a.b.b	ENSGT01010000222294.c.b.b.b.c.a.a.a.b	ENSGT00940000157331.b.a	ENSGT00940000157322.b.b	ENSGT00940000162611.a.a.a.b	ENSGT00940000162611.b	ENSGT00730000111173.h	ENSGT00530000063604.A.d.a	ENSGT00940000157525.a.d	ENSGT00950000183082.b.b.a.b.d.a.a	ENSGT00940000157556.a.a	ENSGT00940000157049.d.c	ENSGT01100000263540.B.c
Salmo	ANCESTRAL SPECIES	109	ENSGT00950000182933.A.a.b	ENSGT00940000156853.p.a.b	ENSGT00940000156853.o	ENSGT00390000015892.a.c	ENSGT01050000244894.b.b.d.a.f.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B.d	ENSGT00530000069282.B.c	ENSGT00950000182935.B.a.c	ENSGT00390000011309.v	ENSGT00390000011093.d.b.b.a	ENSGT00950000183137.a.l.c #21	ENSGT00940000161847.b.a.e.a.b.b	ENSGT00950000183127.c.b.d.a.a.a.f.a	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b.f.b.b #26
Atlantic salmon	DUPLICATION
Atlantic salmon	MODERN SPECIES	11	ENSSSAG00000093391	ENSSSAG00000008602	ENSSSAG00000008650	ENSSSAG00000118003	ENSSSAG00000000409	TMC6 (ENSSSAG00000082590)	tmc8 (ENSSSAG00000085350)	ENSSSAG00000116234	ENSSSAG00000100606	ENSSSAG00000008686	tk1 (ENSSSAG00000001109)	afmid (ENSSSAG00000001106)	cant1b (ENSSSAG00000001450)	si:dkey-93h22.8 (ENSSSAG00000000432) #21	ENSSSAG00000061426	LDB1 (ENSSSAG00000079983) #22	armh3 (ENSSSAG00000093253) #24	KCNIP2 (ENSSSAG00000087854) #26	ENSSSAG00000113294	ENSSSAG00000001924	ENSSSAG00000010284	ENSSSAG00000118544	ENSSSAG00000122295	ENSSSAG00000092058	ENSSSAG00000114833	ENSSSAG00000119088	ENSSSAG00000098411	ENSSSAG00000120262	ENSSSAG00000082855	ENSSSAG00000113713	ENSSSAG00000001463
Atlantic salmon	MODERN SPECIES	3	pcyt2 (ENSSSAG00000000721)	ENSSSAG00000099452	SIRT7 (ENSSSAG00000100338)	ENSSSAG00000087773	MAFG (ENSSSAG00000101008)	ENSSSAG00000097938	ENSSSAG00000088117	ENSSSAG00000083811	TMC6 (ENSSSAG00000096361)	TMC8 (ENSSSAG00000001112)	ENSSSAG00000090525	ENSSSAG00000095018	ENSSSAG00000094473	tk1 (ENSSSAG00000096487)	afmid (ENSSSAG00000092740)	ENSSSAG00000101100 #22	ENSSSAG00000008255 ##27	ENSSSAG00000008769 #21	ENSSSAG00000085531	ENSSSAG00000008825	ENSSSAG00000087614	ENSSSAG00000109291	ARMH3 (ENSSSAG00000009412) #24	ENSSSAG00000001426 #26	ENSSSAG00000095336	ENSSSAG00000103983 #26	ENSSSAG00000113084	ENSSSAG00000118680	ENSSSAG00000112597	ENSSSAG00000101021	ENSSSAG00000101980
River trout	MODERN SPECIES	5	ENSSTUG00000002870	SIRT7 (ENSSTUG00000002794)	ENSSTUG00000002762	MAFG (ENSSTUG00000002750)	ENSSTUG00000002608	ENSSTUG00000002576	syngr2b (ENSSTUG00000002456)	tk1 (ENSSTUG00000002230)	afmid (ENSSTUG00000037919)	cant1b (ENSSTUG00000037894)	ENSSTUG00000037856 ##27	si:dkey-93h22.8 (ENSSTUG00000037850) #21	ENSSTUG00000037845	ENSSTUG00000037834	ENSSTUG00000037824	ldb1b (ENSSTUG00000037683) #22	KCNIP2 (ENSSTUG00000037663) #26	ENSSTUG00000037618	ARHGAP19 (ENSSTUG00000037598)	ENSSTUG00000037522	ENSSTUG00000037509	ENSSTUG00000037506	ENSSTUG00000037495	GOT1 (ENSSTUG00000037417)	NKX2-3 (ENSSTUG00000037406)	slc25a28 (ENSSTUG00000037398)	ENTPD7 (ENSSTUG00000037239)	ENSSTUG00000037216	ATP6V0E2 (ENSSTUG00000037198)	ENSSTUG00000037189	ENSSTUG00000037179
Oncorhynchus	ANCESTRAL SPECIES	78				ENSGT00950000183044.a.a.a.b.e.a	ENSGT00950000182933.A.a.b	ENSGT00940000156853.o	ENSGT00390000015892.a.c	ENSGT01050000244894.b.b.d.a.f.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093.d.b.a	ENSGT00390000012872.b.e.a	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b.e #26	ENSGT00970000194718.b.b.a.b.b	ENSGT01010000222294.c.b.b.b.c.a.a.a.b	ENSGT00940000157331.b.a	ENSGT00940000157322.b.b	ENSGT00940000162611.a.a.a.b	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a.a	ENSGT00730000111173.h	ENSGT00530000063604.A.d.a	ENSGT00940000157525.a.d	ENSGT00950000183082.b.b.a.b.d.a.a	ENSGT00940000157556.a.a	ENSGT00940000157049.d.c
Rainbow trout	MODERN SPECIES	8	ENSOMYG00000064185	ENSOMYG00000055770	ENSOMYG00000049986	TMC8 (ENSOMYG00000050653)	ENSOMYG00000058212	ENSOMYG00000070824	syngr2b (ENSOMYG00000007365)	tk1 (ENSOMYG00000007441)	ENSOMYG00000075825	cant1b (ENSOMYG00000032754)	ENSOMYG00000055952 ##27	ENSOMYG00000058282 #21	ENSOMYG00000049938	ENSOMYG00000033152	ENSOMYG00000075139	ldb1b (ENSOMYG00000050962) #22	ENSOMYG00000061320	armh3 (ENSOMYG00000077014) #24	ENSOMYG00000075143	KCNIP2 (ENSOMYG00000048087) #26	ENSOMYG00000055886	ENSOMYG00000009654	ENSOMYG00000051236	ENSOMYG00000054778	ENSOMYG00000050506	ENSOMYG00000008965	ENSOMYG00000072943	ENSOMYG00000076110	ENSOMYG00000068272	ENSOMYG00000060200	ENSOMYG00000051447
Oncorhynchus_a	ANCESTRAL SPECIES	228										ENSGT00390000011309.y	ENSGT00390000011093.d.a	ENSGT00390000012872.b.e.b	ENSGT00390000007726.a.b ##27	ENSGT00950000183137.a.l #21	ENSGT00950000183127.c.b.d.a.a.a.e.a	ENSGT00390000005639.a.b.d.b #22	ENSGT00390000002554 #24	ENSGT00940000157798.b.e #26	ENSGT00970000194718.b.b.a.b.b
Coho salmon	DUPLICATION
Coho salmon	MODERN SPECIES	117																ldb1b (ENSOKIG00005041272) #22
Coho salmon	MODERN SPECIES	1232													ENSOKIG00005028504 #21	ENSOKIG00005028589	ENSOKIG00005029682	LDB1 (ENSOKIG00005029705) #22	ARMH3 (ENSOKIG00005030163) #24	KCNIP2 (ENSOKIG00005030186) #26	ENSOKIG00005030292	ENSOKIG00005030409	ENSOKIG00005030422	ENSOKIG00005030438	ENSOKIG00005030453	ENSOKIG00005030495	ENSOKIG00005030549
Northern pike	MODERN SPECIES	8	ENSELUG00000029615	ENSELUG00000029936	syngr2b (ENSELUG00000018623)	tk1 (ENSELUG00000018641)	afmid (ENSELUG00000018695)	cant1b (ENSELUG00000018726)	ENSELUG00000018771 ##27	ENSELUG00000018785 #21	ENSELUG00000018858	ENSELUG00000030589	ENSELUG00000018884	ENSELUG00000026073	ENSELUG00000018834	ENSELUG00000018940	ENSELUG00000018909	ldb1b (ENSELUG00000018961) #22	armh3 (ENSELUG00000001513) #24	KCNIP2 (ENSELUG00000019136) #26	ENSELUG00000030337	ENSELUG00000012879	ENSELUG00000019197	ENSELUG00000019171	ENSELUG00000030960	ENSELUG00000033837	ENSELUG00000027821	ENSELUG00000019237	ENSELUG00000034028	ENSELUG00000027831	ENSELUG00000028000	ENSELUG00000031512	ENSELUG00000025833
Elephant shark	DUPLICATION
Elephant shark	MODERN SPECIES	1631																ldb1a (ENSCMIG00000011249) #22	ENSCMIG00000011217	HPS6 (ENSCMIG00000011210)	lbx1b (ENSCMIG00000011205) #35	KCNIP2 (ENSCMIG00000011199) #26	cpn1 (ENSCMIG00000011192)	ENSCMIG00000011182	ENSCMIG00000011106	cutc (ENSCMIG00000011058)	cox15 (ENSCMIG00000011044)	ENSCMIG00000011035	hps1 (ENSCMIG00000011025)	pgam1a (ENSCMIG00000011015)	ENSCMIG00000011010	ENSCMIG00000011009	ENSCMIG00000011008
Elephant shark	MODERN SPECIES	1671	aebp1a (ENSCMIG00000009884)	atp6v1b2 (ENSCMIG00000009888)	TTI2 (ENSCMIG00000009890)	tmem127 (ENSCMIG00000009894)	ENSCMIG00000009896	NCAPH (ENSCMIG00000009899)	ciao1 (ENSCMIG00000009902)	snrnp200 (ENSCMIG00000009978)	slc20a1b (ENSCMIG00000010122)	ENSCMIG00000010126	tmed4 (ENSCMIG00000010131)	ENSCMIG00000010136	ddx56 (ENSCMIG00000010148)	NPC1L1 (ENSCMIG00000010165)	ykt6 (ENSCMIG00000010212)	ENSCMIG00000010225 #22	ENSCMIG00000010281	kcnip3b (ENSCMIG00000010301)	ENSCMIG00000010309	ENSCMIG00000010318	ENSCMIG00000010320	ENSCMIG00000010321 ##15	ENSCMIG00000010326	mat2ab (ENSCMIG00000010351)	si:ch211-283h6.4 (ENSCMIG00000010415)	usp39 (ENSCMIG00000010426)	GGCX (ENSCMIG00000010446)	vamp8 (ENSCMIG00000010449)	ENSCMIG00000010450	rnf181 (ENSCMIG00000010453)	tmem150aa (ENSCMIG00000010454)
Vertebrata	ANCESTRAL SPECIES	416																ENSGT00390000005639.a.a ##22	ENSGT00390000012346
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00390000005639.a.a ##22
Lamprey	MODERN SPECIES	2894																ENSPMAG00000004584 ##22
Gnathostomata	ANCESTRAL SPECIES	9	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a ##21	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00390000017291	ENSGT00940000155482	ENSGT00940000159588
Elephant shark	MODERN SPECIES	1496	PPARGC1A (ENSCMIG00000010585) ##21	ADGRA3 (ENSCMIG00000010504)	KCNIP4 (ENSCMIG00000010482)	PACRGL (ENSCMIG00000010474)	ENSCMIG00000010472	slit2 (ENSCMIG00000009724)	ENSCMIG00000009458	LCORL (ENSCMIG00000009456)	ncapg (ENSCMIG00000009338)	ENSCMIG00000009297	ENSCMIG00000009296	ENSCMIG00000009293	med28 (ENSCMIG00000009291)	lap3 (ENSCMIG00000009218)	clrn2 (ENSCMIG00000009197)	ldb2a (ENSCMIG00000009154) ##22	ENSCMIG00000009139	tapt1b (ENSCMIG00000009054)	prom1b (ENSCMIG00000008934)	ENSCMIG00000008904	CC2D2A (ENSCMIG00000008874)	ENSCMIG00000008861	C1QTNF7 (ENSCMIG00000008860)	ENSCMIG00000008851	ENSCMIG00000008848	ENSCMIG00000008844	ENSCMIG00000008843	ENSCMIG00000008842	ENSCMIG00000008841	RAB28 (ENSCMIG00000008828)	ENSCMIG00000008819
Euteleostomi	ANCESTRAL SPECIES		ENSGT00940000155800	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000006172	ENSGT00940000155482	ENSGT01030000235096	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846
Sarcopterygii	ANCESTRAL SPECIES	2	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000165139	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000006172	ENSGT00940000155482	ENSGT01030000235096	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846
Tetrapoda	ANCESTRAL SPECIES	3	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000165139	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT01030000235096	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449
Amniota	ANCESTRAL SPECIES	2	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000165139	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT01030000235096	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449
Sauria	ANCESTRAL SPECIES	6	ENSGT00940000155800	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT01030000235096	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449
Lepidosauria	ANCESTRAL SPECIES	9	ENSGT00940000155800	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT01030000235096	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000164241
Episquamata	ANCESTRAL SPECIES	3	ENSGT00940000155800	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000006172	ENSGT00940000155482	ENSGT01030000235096	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000164241	ENSGT00940000160449	ENSGT00940000160595.b
Toxicofera	ANCESTRAL SPECIES	21	ENSGT00940000155800	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT01030000235096	ENSGT00940000160357
Elapidae	ANCESTRAL SPECIES	11	ENSGT00390000014876	ENSGT00940000153763.b	ENSGT00940000158460	ENSGT00940000155875	ENSGT00940000157620	ENSGT00940000153441.a.a	ENSGT00940000159795.b	ENSGT00940000165556	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b
Elapidae_a	ANCESTRAL SPECIES	13	ENSGT00390000014876	ENSGT00940000153763.b	ENSGT00940000158460	ENSGT00940000155875	ENSGT00940000157620	ENSGT00940000153441.a.a	ENSGT00940000159795.b	ENSGT00940000165556	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b
Acanthophiinae	ANCESTRAL SPECIES	4	ENSGT00390000014876	ENSGT00940000153763.b	ENSGT00940000158460	ENSGT00940000155875	ENSGT00940000157620	ENSGT00940000153441.a.a	ENSGT00940000159795.b	ENSGT00940000165556	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00940000158402	ENSGT00940000159756	ENSGT00940000158985	ENSGT00940000157235	ENSGT00950000183137.b.a.c.a ##21	ENSGT00950000183137.b.a.c.b ##21	ENSGT00940000155800.k.a	ENSGT00940000162224	ENSGT00390000015958	ENSGT00940000157294	ENSGT00390000007332	ENSGT00390000010434.a
Mainland tiger snake	MODERN SPECIES	108	ENSNSUG00000011300	HPF1 (ENSNSUG00000011298)	CLCN3 (ENSNSUG00000011052)	NEK1 (ENSNSUG00000011050)	SH3RF1 (ENSNSUG00000010950)	CBR4 (ENSNSUG00000010947)	PALLD (ENSNSUG00000010938)	ENSNSUG00000010937	ENSNSUG00000010935	ENSNSUG00000010934	ENSNSUG00000010933	MED28 (ENSNSUG00000010932)	LAP3 (ENSNSUG00000010931)	CLRN2 (ENSNSUG00000010930)	QDPR (ENSNSUG00000010929)	LDB2 (ENSNSUG00000010926) ##22	TAPT1 (ENSNSUG00000010687)	PROM1 (ENSNSUG00000010676)	FGFBP1 (ENSNSUG00000010670)	SLIT2 (ENSNSUG00000010664)	ENSNSUG00000010662	KCNIP4 (ENSNSUG00000010661)	ADGRA3 (ENSNSUG00000010618)	PPARGC1A (ENSNSUG00000010610) ##21
Eastern brown snake	MODERN SPECIES	12	HPF1 (ENSPTXG00000002799)	CLCN3 (ENSPTXG00000002803)	NEK1 (ENSPTXG00000002823)	SH3RF1 (ENSPTXG00000002949)	CBR4 (ENSPTXG00000002953)	ENSPTXG00000002958	ENSPTXG00000002965	ENSPTXG00000002969	ENSPTXG00000002971	LCORL (ENSPTXG00000002973)	ENSPTXG00000002978	MED28 (ENSPTXG00000002981)	LAP3 (ENSPTXG00000002984)	CLRN2 (ENSPTXG00000002986)	QDPR (ENSPTXG00000002987)	LDB2 (ENSPTXG00000002989) ##22	TAPT1 (ENSPTXG00000002993)	PROM1 (ENSPTXG00000002997)	FGFBP1 (ENSPTXG00000003001)	SLIT2 (ENSPTXG00000003109)	PACRGL (ENSPTXG00000014280)	KCNIP4 (ENSPTXG00000014352)	ADGRA3 (ENSPTXG00000014357)	ENSPTXG00000014363 ##21	ENSPTXG00000014365 ##21	ENSPTXG00000014369	SOD3 (ENSPTXG00000014375)	CCDC149 (ENSPTXG00000014377)	LGI2 (ENSPTXG00000014385)	SEPSECS (ENSPTXG00000014544)	PI4K2B (ENSPTXG00000014547)
Indian cobra	MODERN SPECIES	3	AADAT (ENSNNAG00000011084)	MFAP3L (ENSNNAG00000011151)	HPF1 (ENSNNAG00000011169)	CLCN3 (ENSNNAG00000011220)	NEK1 (ENSNNAG00000011401)	SH3RF1 (ENSNNAG00000011951)	CBR4 (ENSNNAG00000012002)	PALLD (ENSNNAG00000012120)	ENSNNAG00000013522	ENSNNAG00000013685	NCAPG (ENSNNAG00000013717)	MED28 (ENSNNAG00000013760)	LAP3 (ENSNNAG00000013792)	CLRN2 (ENSNNAG00000013834)	QDPR (ENSNNAG00000013862)	LDB2 (ENSNNAG00000013877) ##22	SLIT2 (ENSNNAG00000013901)	PACRGL (ENSNNAG00000013981)	KCNIP4 (ENSNNAG00000014013)	ADGRA3 (ENSNNAG00000014236)	PPARGC1A (ENSNNAG00000014522) ##21	ENSNNAG00000014553	DHX15 (ENSNNAG00000014577)	SOD3 (ENSNNAG00000014595)	CCDC149 (ENSNNAG00000014613)	LGI2 (ENSNNAG00000014722)	SEPSECS (ENSNNAG00000014821)	PI4K2B (ENSNNAG00000014852)	ZCCHC4 (ENSNNAG00000014948)	ENSNNAG00000014962	CPZ (ENSNNAG00000015015)
Lizard	MODERN SPECIES	1070														ENSACAG00000038222	ENSACAG00000038134	LDB2 (ENSACAG00000035813) ##22	ENSACAG00000037396	ENSACAG00000012470
Laterata	ANCESTRAL SPECIES	21	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000006172	ENSGT00940000155482	ENSGT01030000235096	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000164241	ENSGT00940000160449	ENSGT00940000160595.b
Argentine black and white tegu	MODERN SPECIES	1	SOD3 (ENSSMRG00000001656)	DHX15 (ENSSMRG00000001639)	PPARGC1A (ENSSMRG00000001615) ##21	GBA3 (ENSSMRG00000001542)	ADGRA3 (ENSSMRG00000001520)	KCNIP4 (ENSSMRG00000001469)	PACRGL (ENSSMRG00000001371)	SLIT2 (ENSSMRG00000001324)	ENSSMRG00000000978	NCAPG (ENSSMRG00000000940)	FAM184B (ENSSMRG00000000763)	MED28 (ENSSMRG00000000730)	LAP3 (ENSSMRG00000000708)	CLRN2 (ENSSMRG00000000698)	QDPR (ENSSMRG00000000697)	LDB2 (ENSSMRG00000000662) ##22	ENSSMRG00000000602	TAPT1 (ENSSMRG00000000542)	PROM1 (ENSSMRG00000000168)	FGFBP1 (ENSSMRG00000000122)	CD38 (ENSSMRG00000000079)	FBXL5 (ENSSMRG00000000027)	CC2D2A (ENSSMRG00000023452)	ENSSMRG00000023451	C1QTNF7 (ENSSMRG00000023450)	CPEB2 (ENSSMRG00000023449)	ENSSMRG00000023447	ENSSMRG00000023446	NKX3-2 (ENSSMRG00000023445)	RAB28 (ENSSMRG00000023444)	ENSSMRG00000023442
Common wall lizard	MODERN SPECIES	17	GBA3 (ENSPMRG00000012612)	ADGRA3 (ENSPMRG00000012584)	ENSPMRG00000012574	KCNIP4 (ENSPMRG00000012569)	PACRGL (ENSPMRG00000012559)	SLIT2 (ENSPMRG00000012451)	ENSPMRG00000012414	ENSPMRG00000012409	ENSPMRG00000012397	NCAPG (ENSPMRG00000012378)	MED28 (ENSPMRG00000012369)	ENSPMRG00000012364	LAP3 (ENSPMRG00000012334)	ENSPMRG00000012315	QDPR (ENSPMRG00000012291)	LDB2 (ENSPMRG00000012282) ##22	TAPT1 (ENSPMRG00000012273)	PROM1 (ENSPMRG00000012236)	FGFBP1 (ENSPMRG00000012227)	ENSPMRG00000018920	IREB2 (ENSPMRG00000018903)	MAN2C1 (ENSPMRG00000018612)	NEIL1 (ENSPMRG00000018525)	COMMD4 (ENSPMRG00000018518)	ENSPMRG00000018511	ENSPMRG00000018497	STOML1 (ENSPMRG00000018476)	ENSPMRG00000018466	ISLR2 (ENSPMRG00000018458)	ENSPMRG00000018448 ##10	CYP11A1 (ENSPMRG00000018435)
tuatara	MODERN SPECIES	714								ENSSPUG00000005977	ENSSPUG00000005991	NCAPG (ENSSPUG00000006034)	FAM184B (ENSSPUG00000006334)	MED28 (ENSSPUG00000006379)	LAP3 (ENSSPUG00000006392)	CLRN2 (ENSSPUG00000006407)	QDPR (ENSSPUG00000006429)	LDB2 (ENSSPUG00000006437) ##22
Archelosauria	ANCESTRAL SPECIES	4	ENSGT00940000155800	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT01030000235096	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449
Cryptodira	ANCESTRAL SPECIES	2	ENSGT00940000155800	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT01030000235096	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000164241	ENSGT00940000160449
Testudinoidea	ANCESTRAL SPECIES	10	ENSGT00940000155800	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT01030000235096	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000164241
Emydidae	ANCESTRAL SPECIES	1	ENSGT00940000155800	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT01030000235096	ENSGT00940000159588	ENSGT00940000160357	ENSGT00990000211892	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000164241
Three-toed box turtle	MODERN SPECIES	26	DHX15 (ENSTMTG00000002439)	PPARGC1A (ENSTMTG00000002447) ##21	GBA3 (ENSTMTG00000002452)	ADGRA3 (ENSTMTG00000002458)	KCNIP4 (ENSTMTG00000002466)	ENSTMTG00000002473	SLIT2 (ENSTMTG00000002651)	ENSTMTG00000005401	LCORL (ENSTMTG00000005413)	NCAPG (ENSTMTG00000005492)	FAM184B (ENSTMTG00000006529)	MED28 (ENSTMTG00000006560)	LAP3 (ENSTMTG00000006569)	CLRN2 (ENSTMTG00000006597)	QDPR (ENSTMTG00000006607)	LDB2 (ENSTMTG00000006627) ##22	TAPT1 (ENSTMTG00000006647)	PROM1 (ENSTMTG00000006688)	FGFBP2 (ENSTMTG00000006970)	CD38 (ENSTMTG00000006997)	BST1 (ENSTMTG00000007026)	FBXL5 (ENSTMTG00000007053)	CC2D2A (ENSTMTG00000007097)	C1QTNF7 (ENSTMTG00000007238)	ENSTMTG00000007257	CPEB2 (ENSTMTG00000007278)	ENSTMTG00000007352	BOD1L1 (ENSTMTG00000007368)	NKX3-2 (ENSTMTG00000007387)	ENSTMTG00000007400	HS3ST1 (ENSTMTG00000007413)
painted turtle	MODERN SPECIES	885									LCORL (ENSCPBG00000018017)	NCAPG (ENSCPBG00000018012)	FAM184B (ENSCPBG00000018011)	MED28 (ENSCPBG00000018010)	LAP3 (ENSCPBG00000018009)	CLRN2 (ENSCPBG00000018008)	QDPR (ENSCPBG00000018007)	LDB2 (ENSCPBG00000018005) ##22	ENSCPBG00000018004	TAPT1 (ENSCPBG00000018003)	PROM1 (ENSCPBG00000018001)	FGFBP2 (ENSCPBG00000017999)	CD38 (ENSCPBG00000017997)	BST1 (ENSCPBG00000017996)	FBXL5 (ENSCPBG00000017994)	CC2D2A (ENSCPBG00000017989)	ENSCPBG00000017988	C1QTNF7 (ENSCPBG00000017987)
Testudinidae	ANCESTRAL SPECIES	11	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000164241	ENSGT00940000160449	ENSGT00940000161846
Goode s thornscrub tortoise	MODERN SPECIES	19	DHX15 (ENSGEVG00005017920)	PPARGC1A (ENSGEVG00005017736) ##21	GBA3 (ENSGEVG00005017692)	ENSGEVG00005017685	ADGRA3 (ENSGEVG00005017643)	KCNIP4 (ENSGEVG00005017568)	PACRGL (ENSGEVG00005017545)	SLIT2 (ENSGEVG00005017408)	LCORL (ENSGEVG00005017290)	NCAPG (ENSGEVG00005017190)	FAM184B (ENSGEVG00005017032)	MED28 (ENSGEVG00005017002)	LAP3 (ENSGEVG00005016970)	CLRN2 (ENSGEVG00005016931)	QDPR (ENSGEVG00005016893)	LDB2 (ENSGEVG00005016780) ##22	TAPT1 (ENSGEVG00005016748)	PROM1 (ENSGEVG00005016270)	FGFBP2 (ENSGEVG00005016212)	FGFBP1 (ENSGEVG00005016178)	CD38 (ENSGEVG00005016145)	BST1 (ENSGEVG00005015927)	FBXL5 (ENSGEVG00005015877)	CC2D2A (ENSGEVG00005015345)	C1QTNF7 (ENSGEVG00005015267)	CPEB2 (ENSGEVG00005015122)	BOD1L1 (ENSGEVG00005015052)	NKX3-2 (ENSGEVG00005014988)	ENSGEVG00005014960	HS3ST1 (ENSGEVG00005014929)	ENSGEVG00005014883
Abingdon island giant tortoise	MODERN SPECIES	2153									ENSCABG00000017517	NCAPG (ENSCABG00000017534)	FAM184B (ENSCABG00000017571)	MED28 (ENSCABG00000017574)	LAP3 (ENSCABG00000017579)	CLRN2 (ENSCABG00000017604)	QDPR (ENSCABG00000017605)	LDB2 (ENSCABG00000017610) ##22
Chinese turtle	MODERN SPECIES	2170								ENSPSIG00000017051	ENSPSIG00000017038	NCAPG (ENSPSIG00000016996)	ENSPSIG00000016982	MED28 (ENSPSIG00000016977)	LAP3 (ENSPSIG00000016429)	CLRN2 (ENSPSIG00000016405)	QDPR (ENSPSIG00000016233)	LDB2 (ENSPSIG00000015734) ##22	ENSPSIG00000015726	TAPT1 (ENSPSIG00000015318)	PROM1 (ENSPSIG00000012741)	FGFBP2 (ENSPSIG00000012707)	FGFBP1 (ENSPSIG00000000005)	CD38 (ENSPSIG00000012324)	BST1 (ENSPSIG00000012086)	FBXL5 (ENSPSIG00000011923)	CC2D2A (ENSPSIG00000009707)	C1QTNF7 (ENSPSIG00000009695)	CPEB2 (ENSPSIG00000009111)	ENSPSIG00000000004	ETV1 (ENSPSIG00000008526)	ARL4A (ENSPSIG00000000003)
Archosauria	ANCESTRAL SPECIES	1	ENSGT00940000155800	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT01030000235096	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449
Australian saltwater crocodile	MODERN SPECIES	65	DHX15 (ENSCPRG00005004902)	ENSCPRG00005004898	PPARGC1A (ENSCPRG00005004873) ##21	ADGRA3 (ENSCPRG00005004846)	ENSCPRG00005004791	KCNIP4 (ENSCPRG00005004785)	PACRGL (ENSCPRG00005004777)	SLIT2 (ENSCPRG00005004729)	LCORL (ENSCPRG00005004691)	NCAPG (ENSCPRG00005004674)	FAM184B (ENSCPRG00005004659)	MED28 (ENSCPRG00005004651)	LAP3 (ENSCPRG00005004478)	CLRN2 (ENSCPRG00005004449)	QDPR (ENSCPRG00005004440)	LDB2 (ENSCPRG00005004419) ##22	ENSCPRG00005004389	TAPT1 (ENSCPRG00005004379)	PROM1 (ENSCPRG00005004340)	FGFBP2 (ENSCPRG00005004336)	FGFBP1 (ENSCPRG00005004334)	CD38 (ENSCPRG00005004324)	BST1 (ENSCPRG00005004317)	FBXL5 (ENSCPRG00005004306)	ENSCPRG00005004303	CC2D2A (ENSCPRG00005004300)	ENSCPRG00005004290	C1QTNF7 (ENSCPRG00005004289)	CPEB2 (ENSCPRG00005004275)	ENSCPRG00005004260	ENSCPRG00005004250
Aves	ANCESTRAL SPECIES	3	ENSGT00940000155800	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT01030000235096	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449
African ostrich	MODERN SPECIES	548	SOD3 (ENSSCUG00000006470)	DHX15 (ENSSCUG00000006468)	PPARGC1A (ENSSCUG00000006459) ##21	GBA3 (ENSSCUG00000006451)	ADGRA3 (ENSSCUG00000006446)	KCNIP4 (ENSSCUG00000006432)	PACRGL (ENSSCUG00000006427)	SLIT2 (ENSSCUG00000006422)	LCORL (ENSSCUG00000006417)	NCAPG (ENSSCUG00000006416)	FAM184B (ENSSCUG00000006414)	MED28 (ENSSCUG00000006413)	LAP3 (ENSSCUG00000006410)	CLRN2 (ENSSCUG00000006409)	QDPR (ENSSCUG00000006408)	LDB2 (ENSSCUG00000006404) ##22	TAPT1 (ENSSCUG00000006387)	PROM1 (ENSSCUG00000006375)	FGFBP2 (ENSSCUG00000006366)	FGFBP1 (ENSSCUG00000006364)	BST1 (ENSSCUG00000006362)	FBXL5 (ENSSCUG00000006360)	CC2D2A (ENSSCUG00000006349)	C1QTNF7 (ENSSCUG00000006341)	CPEB2 (ENSSCUG00000006337)
Neognathae	ANCESTRAL SPECIES	5	ENSGT00940000155800	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT01030000235096	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449
Neognathae_b	ANCESTRAL SPECIES	4	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a ##21	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT01030000235096	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449
Passeriformes	ANCESTRAL SPECIES	4	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a ##21	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT01030000235096	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449
Great tit	MODERN SPECIES	23	CCDC149 (ENSPMJG00000016310)	SOD3 (ENSPMJG00000016311)	DHX15 (ENSPMJG00000016312)	PPARGC1A (ENSPMJG00000016314) ##21	ADGRA3 (ENSPMJG00000016320)	KCNIP4 (ENSPMJG00000016323)	PACRGL (ENSPMJG00000016324)	SLIT2 (ENSPMJG00000016326)	LCORL (ENSPMJG00000016341)	NCAPG (ENSPMJG00000016343)	FAM184B (ENSPMJG00000016345)	MED28 (ENSPMJG00000016346)	LAP3 (ENSPMJG00000016347)	CLRN2 (ENSPMJG00000016348)	QDPR (ENSPMJG00000016349)	LDB2 (ENSPMJG00000016350) ##22	TAPT1 (ENSPMJG00000016351)	PROM1 (ENSPMJG00000016354)	FGFBP2 (ENSPMJG00000016358)	FGFBP1 (ENSPMJG00000016359)	CD38 (ENSPMJG00000016360)	ENSPMJG00000016361	BST1 (ENSPMJG00000016362)	FBXL5 (ENSPMJG00000016363)	CC2D2A (ENSPMJG00000016364)	ENSPMJG00000016366	C1QTNF7 (ENSPMJG00000016367)	CPEB2 (ENSPMJG00000016370)	ENSPMJG00000016372	BOD1L1 (ENSPMJG00000016374)	NKX3-2 (ENSPMJG00000016375)
Passeriformes_d	DUPLICATION
Passeriformes_d	ANCESTRAL SPECIES																	ENSGT00390000005639.a.a.a ##22
Flycatcher	MODERN SPECIES	22	SOD3 (ENSFALG00000014662)	DHX15 (ENSFALG00000009210)	PPARGC1A (ENSFALG00000009211) ##21	ADGRA3 (ENSFALG00000009212)	KCNIP4 (ENSFALG00000009214)	PACRGL (ENSFALG00000009221)	SLIT2 (ENSFALG00000009223)	LCORL (ENSFALG00000009227)	NCAPG (ENSFALG00000009232)	FAM184B (ENSFALG00000009234)	MED28 (ENSFALG00000009238)	LAP3 (ENSFALG00000009242)	CLRN2 (ENSFALG00000028197)	QDPR (ENSFALG00000027910)	ENSFALG00000009259 ##22	ENSFALG00000023317 ##22	TAPT1 (ENSFALG00000009267)	PROM1 (ENSFALG00000009278)	FGFBP2 (ENSFALG00000014686)	FGFBP1 (ENSFALG00000014708)	CD38 (ENSFALG00000009288)	BST1 (ENSFALG00000009305)	FBXL5 (ENSFALG00000009317)	CC2D2A (ENSFALG00000009323)	C1QTNF7 (ENSFALG00000009328)	CPEB2 (ENSFALG00000027574)	BOD1L1 (ENSFALG00000009340)	NKX3-2 (ENSFALG00000026941)	RAB28 (ENSFALG00000009347)	HS3ST1 (ENSFALG00000014725)	ENSFALG00000022853
Passeriformes_d	ANCESTRAL SPECIES	4	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a ##21	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a.b ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT01030000235096	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449
Flycatcher	MODERN SPECIES	22	CCDC149 (ENSFALG00000009207)	SOD3 (ENSFALG00000014662)	DHX15 (ENSFALG00000009210)	PPARGC1A (ENSFALG00000009211) ##21	ADGRA3 (ENSFALG00000009212)	KCNIP4 (ENSFALG00000009214)	PACRGL (ENSFALG00000009221)	SLIT2 (ENSFALG00000009223)	LCORL (ENSFALG00000009227)	NCAPG (ENSFALG00000009232)	FAM184B (ENSFALG00000009234)	MED28 (ENSFALG00000009238)	LAP3 (ENSFALG00000009242)	CLRN2 (ENSFALG00000028197)	QDPR (ENSFALG00000027910)	ENSFALG00000009259 ##22	ENSFALG00000023317 ##22	TAPT1 (ENSFALG00000009267)	PROM1 (ENSFALG00000009278)	FGFBP2 (ENSFALG00000014686)	FGFBP1 (ENSFALG00000014708)	CD38 (ENSFALG00000009288)	BST1 (ENSFALG00000009305)	FBXL5 (ENSFALG00000009317)	CC2D2A (ENSFALG00000009323)	C1QTNF7 (ENSFALG00000009328)	CPEB2 (ENSFALG00000027574)	BOD1L1 (ENSFALG00000009340)	NKX3-2 (ENSFALG00000026941)	RAB28 (ENSFALG00000009347)	HS3ST1 (ENSFALG00000014725)
Passeriformes_g	ANCESTRAL SPECIES	5	ENSGT00940000155800	ENSGT00950000183137.b.a.b ##21	ENSGT00950000183137.b.a.a ##21	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a.b ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT01030000235096	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449
Medium ground finch	MODERN SPECIES		SOD3 (ENSGFOG00000001424)	DHX15 (ENSGFOG00000001405)	ENSGFOG00000001391 ##21	ENSGFOG00000001383 ##21	ADGRA3 (ENSGFOG00000001255)	KCNIP4 (ENSGFOG00000001224)	PACRGL (ENSGFOG00000001209)	SLIT2 (ENSGFOG00000001040)	LCORL (ENSGFOG00000001000)	NCAPG (ENSGFOG00000000976)	FAM184B (ENSGFOG00000000947)	MED28 (ENSGFOG00000000924)	LAP3 (ENSGFOG00000000912)	CLRN2 (ENSGFOG00000000908)	QDPR (ENSGFOG00000000896)	LDB2 (ENSGFOG00000000880) ##22	TAPT1 (ENSGFOG00000000647)	PROM1 (ENSGFOG00000000527)	FGFBP2 (ENSGFOG00000000505)	FGFBP1 (ENSGFOG00000000500)	CD38 (ENSGFOG00000000497)	BST1 (ENSGFOG00000000489)	FBXL5 (ENSGFOG00000000478)	CC2D2A (ENSGFOG00000000441)	C1QTNF7 (ENSGFOG00000000436)	CPEB2 (ENSGFOG00000000433)	BOD1L1 (ENSGFOG00000000428)	RAB28 (ENSGFOG00000000423)	ENSGFOG00000000417	HS3ST1 (ENSGFOG00000000414)	ZNF518B (ENSGFOG00000000408)
Passeroidea	ANCESTRAL SPECIES	4	ENSGT00940000155800	ENSGT00950000183137.b.a.b ##21	ENSGT00950000183137.b.a.a ##21	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a.b ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT01030000235096	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449
Zebra finch	MODERN SPECIES	25	CCDC149 (ENSTGUG00000009438)	SOD3 (ENSTGUG00000009451)	DHX15 (ENSTGUG00000009452)	PPARGC1A (ENSTGUG00000009487) ##21	ADGRA3 (ENSTGUG00000009517)	KCNIP4 (ENSTGUG00000009548)	PACRGL (ENSTGUG00000009573)	SLIT2 (ENSTGUG00000009575)	LCORL (ENSTGUG00000024633)	NCAPG (ENSTGUG00000009641)	FAM184B (ENSTGUG00000009652)	MED28 (ENSTGUG00000009655)	LAP3 (ENSTGUG00000009661)	CLRN2 (ENSTGUG00000021577)	QDPR (ENSTGUG00000023659)	LDB2 (ENSTGUG00000009708) ##22	TAPT1 (ENSTGUG00000009719)	PROM1 (ENSTGUG00000009725)	FGFBP2 (ENSTGUG00000009762)	FGFBP1 (ENSTGUG00000009763)	ENSTGUG00000009764	BST1 (ENSTGUG00000009768)	FBXL5 (ENSTGUG00000009775)	CC2D2A (ENSTGUG00000009795)	C1QTNF7 (ENSTGUG00000022614)	CPEB2 (ENSTGUG00000009822)	BOD1L1 (ENSTGUG00000024952)	NKX3-2 (ENSTGUG00000022168)	RAB28 (ENSTGUG00000009853)	HS3ST1 (ENSTGUG00000025106)	CLNK (ENSTGUG00000025434)
Common canary	MODERN SPECIES	2	SOD3 (ENSSCAG00000004707)	DHX15 (ENSSCAG00000004696)	PPARGC1A (ENSSCAG00000004681) ##21	ADGRA3 (ENSSCAG00000004631)	KCNIP4 (ENSSCAG00000004606)	PACRGL (ENSSCAG00000004596)	SLIT2 (ENSSCAG00000002023)	ENSSCAG00000001527	LCORL (ENSSCAG00000001523)	NCAPG (ENSSCAG00000001509)	FAM184B (ENSSCAG00000001496)	MED28 (ENSSCAG00000001491)	LAP3 (ENSSCAG00000001484)	CLRN2 (ENSSCAG00000001470)	QDPR (ENSSCAG00000001462)	LDB2 (ENSSCAG00000001448) ##22	TAPT1 (ENSSCAG00000001104)	PROM1 (ENSSCAG00000000963)	FGFBP2 (ENSSCAG00000000953)	FGFBP1 (ENSSCAG00000000946)	CD38 (ENSSCAG00000000937)	BST1 (ENSSCAG00000000932)	FBXL5 (ENSSCAG00000000915)	CC2D2A (ENSSCAG00000000790)	ENSSCAG00000000756	C1QTNF7 (ENSSCAG00000000750)	CPEB2 (ENSSCAG00000000742)	BOD1L1 (ENSSCAG00000000697)	RAB28 (ENSSCAG00000000688)	HS3ST1 (ENSSCAG00000000660)	ZNF518B (ENSSCAG00000000655)
Neognathae_c	ANCESTRAL SPECIES	3	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a ##21	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000160595.b
Kakapo	MODERN SPECIES	24	PPARGC1A (ENSSHBG00005017729) ##21	ENSSHBG00005017723	ADGRA3 (ENSSHBG00005017709)	ENSSHBG00005017698	KCNIP4 (ENSSHBG00005017689)	PACRGL (ENSSHBG00005017674)	SLIT2 (ENSSHBG00005012686)	LCORL (ENSSHBG00005011891)	ENSSHBG00005011838	ENSSHBG00005011809	ENSSHBG00005011791	MED28 (ENSSHBG00005011774)	LAP3 (ENSSHBG00005011753)	CLRN2 (ENSSHBG00005011732)	QDPR (ENSSHBG00005011714)	LDB2 (ENSSHBG00005011680) ##22	TAPT1 (ENSSHBG00005011651)	PROM1 (ENSSHBG00005011602)	FGFBP2 (ENSSHBG00005011546)	FGFBP1 (ENSSHBG00005011531)	CD38 (ENSSHBG00005011518)	BST1 (ENSSHBG00005011491)	FBXL5 (ENSSHBG00005011453)	CC2D2A (ENSSHBG00005011343)	C1QTNF7 (ENSSHBG00005011280)	CPEB2 (ENSSHBG00005011259)	ENSSHBG00005011196	NKX3-2 (ENSSHBG00005011160)	ENSSHBG00005011136	HS3ST1 (ENSSHBG00005011102)	ZNF518B (ENSSHBG00005011079)
Golden eagle	MODERN SPECIES		SOD3 (ENSACCG00020000203)	DHX15 (ENSACCG00020000202)	PPARGC1A (ENSACCG00020000201) ##21	ADGRA3 (ENSACCG00020000200)	KCNIP4 (ENSACCG00020000199)	PACRGL (ENSACCG00020000198)	SLIT2 (ENSACCG00020000196)	ENSACCG00020000195	LCORL (ENSACCG00020000194)	NCAPG (ENSACCG00020000193)	FAM184B (ENSACCG00020000192)	MED28 (ENSACCG00020000191)	LAP3 (ENSACCG00020000190)	CLRN2 (ENSACCG00020000189)	QDPR (ENSACCG00020000188)	LDB2 (ENSACCG00020000187) ##22	TAPT1 (ENSACCG00020000186)	PROM1 (ENSACCG00020000185)	FGFBP2 (ENSACCG00020000184)	FGFBP1 (ENSACCG00020000183)	CD38 (ENSACCG00020000182)	BST1 (ENSACCG00020000181)	FBXL5 (ENSACCG00020000180)	CC2D2A (ENSACCG00020000179)	C1QTNF7 (ENSACCG00020000178)	CPEB2 (ENSACCG00020000177)	ENSACCG00020000175	ENSACCG00020000174	NKX3-2 (ENSACCG00020000173)	RAB28 (ENSACCG00020000172)	HS3ST1 (ENSACCG00020000171)
Galloanserae	ANCESTRAL SPECIES	5	ENSGT00940000155800	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT01030000235096	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449
Anatidae	ANCESTRAL SPECIES	2	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a ##21	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT01030000235096	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000161846
Pink-footed goose	MODERN SPECIES	57	SOD3 (ENSABRG00000014787)	DHX15 (ENSABRG00000014781)	PPARGC1A (ENSABRG00000014767) ##21	ENSABRG00000014762	ADGRA3 (ENSABRG00000014750)	KCNIP4 (ENSABRG00000014740)	PACRGL (ENSABRG00000014727)	SLIT2 (ENSABRG00000014700)	LCORL (ENSABRG00000014672)	NCAPG (ENSABRG00000014658)	FAM184B (ENSABRG00000014647)	MED28 (ENSABRG00000014643)	LAP3 (ENSABRG00000014639)	CLRN2 (ENSABRG00000014636)	QDPR (ENSABRG00000014631)	LDB2 (ENSABRG00000014613) ##22	TAPT1 (ENSABRG00000014605)	PROM1 (ENSABRG00000014568)	FGFBP2 (ENSABRG00000014565)	FGFBP1 (ENSABRG00000014562)	CD38 (ENSABRG00000014557)	FBXL5 (ENSABRG00000014548)	CC2D2A (ENSABRG00000014532)	ENSABRG00000014522	C1QTNF7 (ENSABRG00000014517)	ENSABRG00000014514	CPEB2 (ENSABRG00000014506)	BOD1L1 (ENSABRG00000014481)	NKX3-2 (ENSABRG00000014468)	RAB28 (ENSABRG00000014461)
Duck	MODERN SPECIES	22	SOD3 (ENSAPLG00000001811)	DHX15 (ENSAPLG00000005889)	PPARGC1A (ENSAPLG00000005303) ##21	ADGRA3 (ENSAPLG00000009086)	KCNIP4 (ENSAPLG00000009534)	PACRGL (ENSAPLG00000009745)	SLIT2 (ENSAPLG00000009781)	ENSAPLG00000024706	ENSAPLG00000006384	NCAPG (ENSAPLG00000006687)	FAM184B (ENSAPLG00000007157)	MED28 (ENSAPLG00000007405)	LAP3 (ENSAPLG00000007431)	CLRN2 (ENSAPLG00000007712)	QDPR (ENSAPLG00000007721)	LDB2 (ENSAPLG00000007630) ##22	TAPT1 (ENSAPLG00000007389)	PROM1 (ENSAPLG00000006442)	FGFBP2 (ENSAPLG00000002113)	FGFBP1 (ENSAPLG00000002112)	CD38 (ENSAPLG00000006255)	BST1 (ENSAPLG00000022493)	FBXL5 (ENSAPLG00000005791)	CC2D2A (ENSAPLG00000005264)	ENSAPLG00000019610	C1QTNF7 (ENSAPLG00000005233)	CPEB2 (ENSAPLG00000005039)	BOD1L1 (ENSAPLG00000024618)	NKX3-2 (ENSAPLG00000027777)	ENSAPLG00000015052	ENSAPLG00000028642
Phasianidae	ANCESTRAL SPECIES	2	ENSGT00940000155800	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846
Japanese quail	MODERN SPECIES	22	CCDC149 (ENSCJPG00005018374)	SOD3 (ENSCJPG00005018375)	DHX15 (ENSCJPG00005018376)	PPARGC1A (ENSCJPG00005018379) ##21	ADGRA3 (ENSCJPG00005018386)	KCNIP4 (ENSCJPG00005018389)	PACRGL (ENSCJPG00005018390)	SLIT2 (ENSCJPG00005018391)	LCORL (ENSCJPG00005018397)	NCAPG (ENSCJPG00005018398)	FAM184B (ENSCJPG00005018399)	MED28 (ENSCJPG00005018400)	LAP3 (ENSCJPG00005018401)	CLRN2 (ENSCJPG00005018402)	QDPR (ENSCJPG00005018403)	LDB2 (ENSCJPG00005018404) ##22	TAPT1 (ENSCJPG00005018406)	PROM1 (ENSCJPG00005018407)	FGFBP2 (ENSCJPG00005018408)	FGFBP1 (ENSCJPG00005018409)	CD38 (ENSCJPG00005018410)	BST1 (ENSCJPG00005018411)	FBXL5 (ENSCJPG00005018412)	CC2D2A (ENSCJPG00005018413)	C1QTNF7 (ENSCJPG00005018414)	CPEB2 (ENSCJPG00005018416)	ENSCJPG00005018425	ENSCJPG00005018426	NKX3-2 (ENSCJPG00005018427)	RAB28 (ENSCJPG00005018428)	HS3ST1 (ENSCJPG00005018434)
Phasianidae_b	ANCESTRAL SPECIES	4	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a.a	ENSGT00530000063669.a.b	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846
Chicken	MODERN SPECIES	33	PPARGC1A (ENSGALG00010010006) ##21	ENSGALG00010010027	ADGRA3 (ENSGALG00010009200)	KCNIP4 (ENSGALG00010010298)	PACRGL (ENSGALG00010010308)	SLIT2 (ENSGALG00010010383)	LCORL (ENSGALG00010010971)	LCORL (ENSGALG00010010958)	NCAPG (ENSGALG00010010974)	ENSGALG00010012058	ENSGALG00010010979	MED28 (ENSGALG00010010983)	LAP3 (ENSGALG00010010997)	CLRN2 (ENSGALG00010011000)	QDPR (ENSGALG00010011018)	LDB2 (ENSGALG00010011096) ##22	ENSGALG00010011112	TAPT1 (ENSGALG00010011116)	PROM1 (ENSGALG00010010434)	FGFBP2 (ENSGALG00010010467)	FGFBP1 (ENSGALG00010010483)	CD38 (ENSGALG00010010505)	BST1 (ENSGALG00010010547)	FBXL5 (ENSGALG00010010585)	CC2D2A (ENSGALG00010010642)	C1QTNF7 (ENSGALG00010010655)	CPEB2 (ENSGALG00010010661)	BOD1L1 (ENSGALG00010009133)	NKX3-2 (ENSGALG00010010183)	RAB28 (ENSGALG00010009372)	ZNF518B (ENSGALG00010009441)
Turkey	MODERN SPECIES	24	ADGRA3 (ENSMGAG00000012495)	KCNIP4 (ENSMGAG00000012506)	PACRGL (ENSMGAG00000012511)	SLIT2 (ENSMGAG00000012515)	ENSMGAG00000017819	ENSMGAG00000022532	ENSMGAG00000007141	ENSMGAG00000021486	ENSMGAG00000012554	LCORL (ENSMGAG00000018531)	NCAPG (ENSMGAG00000012563)	FAM184B (ENSMGAG00000012574)	LAP3 (ENSMGAG00000012582)	CLRN2 (ENSMGAG00000012587)	QDPR (ENSMGAG00000012588)	LDB2 (ENSMGAG00000012591) ##22	TAPT1 (ENSMGAG00000012598)	PROM1 (ENSMGAG00000012601)	FGFBP2 (ENSMGAG00000012630)	FGFBP1 (ENSMGAG00000012633)	CD38 (ENSMGAG00000012634)	BST1 (ENSMGAG00000012635)	FBXL5 (ENSMGAG00000012647)	CC2D2A (ENSMGAG00000012655)	C1QTNF7 (ENSMGAG00000012661)	ENSMGAG00000005200	ENSMGAG00000012824	ENSMGAG00000012825	TBC1D14 (ENSMGAG00000017001)	ENSMGAG00000020189	ENSMGAG00000012807
Mammalia	ANCESTRAL SPECIES	1	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000165139	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT01030000235096	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449
Platypus	MODERN SPECIES	15	CRYZ (ENSOANG00000002171)	ENSOANG00000002170	TNNI3K (ENSOANG00000030986)	FPGT (ENSOANG00000045285)	ENSOANG00000030110	ENSOANG00000040243	ZRANB2 (ENSOANG00000044086)	PTGER3 (ENSOANG00000044832)	CTH (ENSOANG00000015532)	ANKRD13C (ENSOANG00000015530)	SRSF11 (ENSOANG00000015528)	LRRC40 (ENSOANG00000015526)	LRRC7 (ENSOANG00000015522)	ENSOANG00000013830	ENSOANG00000040452	LDB2 (ENSOANG00000004866) ##22	TAPT1 (ENSOANG00000004220)	ENSOANG00000013966	ENSOANG00000039137	ENSOANG00000015680	BST1 (ENSOANG00000051248)	FBXL5 (ENSOANG00000010867)	CC2D2A (ENSOANG00000039984)	C1QTNF7 (ENSOANG00000008795)	CPEB2 (ENSOANG00000003552)	ENSOANG00000047559	ENSOANG00000005806	ENSOANG00000041536	HS3ST1 (ENSOANG00000012467)	ENSOANG00000041268	ENSOANG00000013888
Theria	ANCESTRAL SPECIES	6	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000165139	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT01030000235096	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000156198.d	ENSGT00940000161843	ENSGT00940000161833
Marsupialia	ANCESTRAL SPECIES	7	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000156198.d	ENSGT00940000161843	ENSGT00940000164241	ENSGT00940000160449
Marsupialia_b	ANCESTRAL SPECIES	8	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000156198.d	ENSGT00940000161843	ENSGT00940000164241	ENSGT00940000160449
Diprotodontia	ANCESTRAL SPECIES	10	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000156198.d	ENSGT00940000161843	ENSGT00940000164241	ENSGT00940000160449
Diprotodontia_a	ANCESTRAL SPECIES	12	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000156198.d	ENSGT00940000161843	ENSGT00940000164241	ENSGT00940000160449
Common wonbat	MODERN SPECIES	1054	DHX15 (ENSVURG00010004378)	PPARGC1A (ENSVURG00010004128) ##21	GBA3 (ENSVURG00010003981)	ADGRA3 (ENSVURG00010003909)	KCNIP4 (ENSVURG00010003721)	PACRGL (ENSVURG00010003638)	SLIT2 (ENSVURG00010003053)	ENSVURG00010002861	LCORL (ENSVURG00010002792)	NCAPG (ENSVURG00010002704)	FAM184B (ENSVURG00010002687)	MED28 (ENSVURG00010002668)	LAP3 (ENSVURG00010002623)	CLRN2 (ENSVURG00010002616)	QDPR (ENSVURG00010002603)	LDB2 (ENSVURG00010002542) ##22	TAPT1 (ENSVURG00010001958)	PROM1 (ENSVURG00010001779)	ENSVURG00010001766	ENSVURG00010001717	CD38 (ENSVURG00010001704)	BST1 (ENSVURG00010001669)	FBXL5 (ENSVURG00010001648)	CC2D2A (ENSVURG00010001386)	C1QTNF7 (ENSVURG00010001365)	CPEB2 (ENSVURG00010000904)	ENSVURG00010000789	BOD1L1 (ENSVURG00010000594)	NKX3-2 (ENSVURG00010000568)	ENSVURG00010000538	HS3ST1 (ENSVURG00010000443)
koala	MODERN SPECIES	2	PPARGC1A (ENSPCIG00000015835) ##21	GBA3 (ENSPCIG00000031948)	ADGRA3 (ENSPCIG00000003169)	KCNIP4 (ENSPCIG00000032533)	PACRGL (ENSPCIG00000001570)	SLIT2 (ENSPCIG00000001602)	ENSPCIG00000033287	LCORL (ENSPCIG00000002185)	NCAPG (ENSPCIG00000002094)	FAM184B (ENSPCIG00000002043)	MED28 (ENSPCIG00000002020)	LAP3 (ENSPCIG00000001974)	ENSPCIG00000001957	CLRN2 (ENSPCIG00000034320)	QDPR (ENSPCIG00000036849)	LDB2 (ENSPCIG00000018570) ##22	TAPT1 (ENSPCIG00000018568)	ENSPCIG00000018564	PROM1 (ENSPCIG00000018546)	ENSPCIG00000034587	ENSPCIG00000018539	BST1 (ENSPCIG00000018537)	FBXL5 (ENSPCIG00000018536)	CC2D2A (ENSPCIG00000018532)	C1QTNF7 (ENSPCIG00000018529)	CPEB2 (ENSPCIG00000024549)	ENSPCIG00000034492	ENSPCIG00000026265	NKX3-2 (ENSPCIG00000032566)	ENSPCIG00000034305
Wallaby	MODERN SPECIES	7811																ENSMEUG00000007213 ##22
Tasmanian devil	MODERN SPECIES	5	SOD3 (ENSSHAG00000010341)	DHX15 (ENSSHAG00000011568)	PPARGC1A (ENSSHAG00000010033) ##21	GBA3 (ENSSHAG00000014922)	ADGRA3 (ENSSHAG00000015732)	KCNIP4 (ENSSHAG00000018003)	PACRGL (ENSSHAG00000018246)	SLIT2 (ENSSHAG00000018310)	LCORL (ENSSHAG00000022282)	NCAPG (ENSSHAG00000016051)	FAM184B (ENSSHAG00000030198)	MED28 (ENSSHAG00000021089)	LAP3 (ENSSHAG00000016352)	CLRN2 (ENSSHAG00000020791)	QDPR (ENSSHAG00000020885)	LDB2 (ENSSHAG00000017644) ##22	TAPT1 (ENSSHAG00000026955)	PROM1 (ENSSHAG00000018318)	ENSSHAG00000018438	ENSSHAG00000018471	CD38 (ENSSHAG00000023213)	BST1 (ENSSHAG00000003456)	FBXL5 (ENSSHAG00000004867)	C1QTNF7 (ENSSHAG00000007411)	CC2D2A (ENSSHAG00000005645)	CPEB2 (ENSSHAG00000009862)	BOD1L1 (ENSSHAG00000021224)	ENSSHAG00000023972	ENSSHAG00000009274	ENSSHAG00000009978	ENSSHAG00000027669
Opossum	MODERN SPECIES	4	ENSMODG00000024777	ENSMODG00000029251	ENSMODG00000042215	ENSMODG00000000625	PACRGL (ENSMODG00000000641)	SLIT2 (ENSMODG00000000731)	ENSMODG00000050739	ENSMODG00000000757	NCAPG (ENSMODG00000000781)	FAM184B (ENSMODG00000000804)	MED28 (ENSMODG00000000813)	LAP3 (ENSMODG00000000861)	CLRN2 (ENSMODG00000000867)	ENSMODG00000000879	ENSMODG00000028622	LDB2 (ENSMODG00000000910) ##22	ENSMODG00000042912	TAPT1 (ENSMODG00000000930)	PROM1 (ENSMODG00000000987)	ENSMODG00000024759	ENSMODG00000037084	ENSMODG00000001007	BST1 (ENSMODG00000001017)	FBXL5 (ENSMODG00000001064)	CC2D2A (ENSMODG00000001102)	C1QTNF7 (ENSMODG00000046573)	CPEB2 (ENSMODG00000001149)	ENSMODG00000001155	ENSMODG00000043625	ENSMODG00000039719	ENSMODG00000001180
Eutheria	ANCESTRAL SPECIES	2	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000165139.b	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT01030000235096	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000156198.d	ENSGT00940000161843	ENSGT00940000161833
Boreoeutheria	ANCESTRAL SPECIES	8	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000165139.b	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00990000204159	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00960000191062	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT01030000235096	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000156198.d
Laurasiatheria	ANCESTRAL SPECIES	11	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000165139.b	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00990000204159	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00960000191062	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT01030000235096	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000156198.d	ENSGT00940000161843
Laurasiatheria_a	ANCESTRAL SPECIES	8	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000165139.b	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT01010000227024	ENSGT00390000012430	ENSGT00990000204159	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00960000191062	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT01030000235096	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000156198.d	ENSGT00940000161843
Artiodactyla	ANCESTRAL SPECIES	12	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT01010000227024	ENSGT00390000012430	ENSGT00990000204159	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00960000191062	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000156198.d	ENSGT00940000161843	ENSGT00940000161833
Suina	ANCESTRAL SPECIES	33	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT01010000227024	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00990000209835	ENSGT00940000160449
Chacoan peccary	MODERN SPECIES	960	PPARGC1A (ENSCWAG00000021590) ##21	GBA3 (ENSCWAG00000021575)	ADGRA3 (ENSCWAG00000021565)	KCNIP4 (ENSCWAG00000021434)	PACRGL (ENSCWAG00000021407)	SLIT2 (ENSCWAG00000021168)	LCORL (ENSCWAG00000021051)	NCAPG (ENSCWAG00000021025)	ENSCWAG00000021017	DCAF16 (ENSCWAG00000021010)	FAM184B (ENSCWAG00000020994)	MED28 (ENSCWAG00000020976)	LAP3 (ENSCWAG00000020960)	CLRN2 (ENSCWAG00000020951)	QDPR (ENSCWAG00000020915)	LDB2 (ENSCWAG00000020873) ##22	TAPT1 (ENSCWAG00000020781)	ENSCWAG00000020764	ENSCWAG00000020746	FGFBP1 (ENSCWAG00000020734)	CD38 (ENSCWAG00000020715)	BST1 (ENSCWAG00000020680)	FAM200B (ENSCWAG00000020666)	FBXL5 (ENSCWAG00000020634)	CC2D2A (ENSCWAG00000020548)	C1QTNF7 (ENSCWAG00000020530)	CPEB2 (ENSCWAG00000019950)	ENSCWAG00000019903	ENSCWAG00000019897	NKX3-2 (ENSCWAG00000019886)	ENSCWAG00000019854
Pig	MODERN SPECIES	16	PPARGC1A (ENSSSCG00000029275) ##21	GBA3 (ENSSSCG00000008754)	ADGRA3 (ENSSSCG00000008753)	KCNIP4 (ENSSSCG00000023934)	PACRGL (ENSSSCG00000008750)	SLIT2 (ENSSSCG00000008749)	ENSSSCG00000045672	LCORL (ENSSSCG00000008748)	NCAPG (ENSSSCG00000008747)	DCAF16 (ENSSSCG00000040393)	FAM184B (ENSSSCG00000026232)	MED28 (ENSSSCG00000029989)	LAP3 (ENSSSCG00000023604)	CLRN2 (ENSSSCG00000023941)	QDPR (ENSSSCG00000034811)	LDB2 (ENSSSCG00000029227) ##22	TAPT1 (ENSSSCG00000021828)	PROM1 (ENSSSCG00000008745)	FGFBP1 (ENSSSCG00000008741)	CD38 (ENSSSCG00000008742)	BST1 (ENSSSCG00000028359)	ENSSSCG00000060364	FBXL5 (ENSSSCG00000008740)	CC2D2A (ENSSSCG00000008738)	C1QTNF7 (ENSSSCG00000008737)	CPEB2 (ENSSSCG00000038410)	ENSSSCG00000042681	BOD1L1 (ENSSSCG00000008735)	NKX3-2 (ENSSSCG00000034181)	RAB28 (ENSSSCG00000022358)	ENSSSCG00000039778
Artiodactyla_a	ANCESTRAL SPECIES	12	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430	ENSGT00990000204159	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00960000191062	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000156198.d	ENSGT00940000161843	ENSGT00940000161833
Artiodactyla_b	ANCESTRAL SPECIES	16	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430.b	ENSGT00990000204159	ENSGT00390000012430.a.a	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00960000191062	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000156198.d	ENSGT00940000161843	ENSGT00940000161833
Pecora	ANCESTRAL SPECIES	15	ENSGT00530000063812.A	ENSGT00950000182850.a.b.a.a	ENSGT00950000183067.a.a	ENSGT00940000164031	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318.h.b.a	ENSGT00940000154521.A	ENSGT00940000157250.p	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b.q.b	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000156198.d	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449
Yarkand deer	MODERN SPECIES	29	GRPEL1 (ENSCHYG00000019821)	ENSCHYG00000019763	ENSCHYG00000019740	TBC1D14 (ENSCHYG00000019146)	KIAA0232 (ENSCHYG00000018708)	ENSCHYG00000018646	ENSCHYG00000018589	BLOC1S4 (ENSCHYG00000018565)	ENSCHYG00000018541	ENSCHYG00000018414	ENSCHYG00000016693	CLRN2 (ENSCHYG00000016549)	ENSCHYG00000016124	ENSCHYG00000015781	ENSCHYG00000015690	LDB2 (ENSCHYG00000015438) ##22	TAPT1 (ENSCHYG00000013996)	ENSCHYG00000012609	FGFBP1 (ENSCHYG00000012513)	ENSCHYG00000012481	ENSCHYG00000012436	BST1 (ENSCHYG00000012217)	FBXL5 (ENSCHYG00000012169)	CC2D2A (ENSCHYG00000011930)	C1QTNF7 (ENSCHYG00000011860)	CPEB2 (ENSCHYG00000009885)	ENSCHYG00000009663	ENSCHYG00000009631	ENSCHYG00000009590	ENSCHYG00000009368	NKX3-2 (ENSCHYG00000009308)
Percora_a	ANCESTRAL SPECIES	18	ENSGT00950000182850.a.b.a.a	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000164031	ENSGT00390000005589.a.a	ENSGT00940000157318.h.b.b	ENSGT00940000154521.A	ENSGT00940000157250.p	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b.q.b.c.b	ENSGT01030000234638.b.a.b.q.b.c.a	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000156198.d	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449
Siberian musk deer	MODERN SPECIES	1272	ABLIM2 (ENSMMSG00000019368)	AFAP1 (ENSMMSG00000019516)	SORCS2 (ENSMMSG00000019625)	PSAPL1 (ENSMMSG00000019730)	ENSMMSG00000019734	ENSMMSG00000019744	ENSMMSG00000019761	TBC1D14 (ENSMMSG00000019790)	KIAA0232 (ENSMMSG00000019984)	ENSMMSG00000020014	ENSMMSG00000020026	ENSMMSG00000020063	CLRN2 (ENSMMSG00000020425)	QDPR (ENSMMSG00000020473)	ENSMMSG00000020553	LDB2 (ENSMMSG00000020581) ##22	TAPT1 (ENSMMSG00000020683)	PROM1 (ENSMMSG00000020761)	FGFBP1 (ENSMMSG00000020844)	ENSMMSG00000020866	BST1 (ENSMMSG00000020912)	FAM200B (ENSMMSG00000020940)	FBXL5 (ENSMMSG00000020955)	CC2D2A (ENSMMSG00000021035)	ENSMMSG00000021214	C1QTNF7 (ENSMMSG00000021227)	CPEB2 (ENSMMSG00000021302)
Bovidae	ANCESTRAL SPECIES	18	ENSGT00950000183067.a.a	ENSGT00940000164031	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318.h.b.b	ENSGT00940000154521.A	ENSGT00940000157250.p	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b.q.b.c.b	ENSGT01030000234638.b.a.b.q.b.d	ENSGT01030000234638.b.a.b.q.b.c.a	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00950000183314	ENSGT00940000156198.c.a	ENSGT00940000156198.d	ENSGT00940000161843	ENSGT00940000161833
Bovinae	ANCESTRAL SPECIES	15	ENSGT00950000183067.a.a	ENSGT00940000164031	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318.h.b.b	ENSGT00940000154521.A	ENSGT00940000157250.p	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b.q.b.c.b	ENSGT01030000234638.b.a.b.q.b.d.b	ENSGT01030000234638.b.a.b.q.b.d.a	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00950000183314	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449
Bos	ANCESTRAL SPECIES	15	ENSGT00950000183067.a.a	ENSGT00940000164031	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318.h.b.b	ENSGT00940000154521.A	ENSGT00940000157250.p	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b.q.b.c.b	ENSGT01030000234638.b.a.b.q.b.d.b	ENSGT01030000234638.b.a.b.q.b.d.a	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00950000183314	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449
Bos_a	ANCESTRAL SPECIES	21														ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00950000183314	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000161846
Domestic yak	MODERN SPECIES	25	IDUA (ENSBGRG00000019585)	SLC26A1 (ENSBGRG00000019694)	DGKQ (ENSBGRG00000019777)	TMEM175 (ENSBGRG00000020060)	GAK (ENSBGRG00000020270)	CPLX1 (ENSBGRG00000020565)	ENSBGRG00000020591	ENSBGRG00000020684	ENSBGRG00000020706	ENSBGRG00000020748	ENSBGRG00000020937	PDE6B (ENSBGRG00000020982)	PIGG (ENSBGRG00000021520)	CLRN2 (ENSBGRG00000021734)	QDPR (ENSBGRG00000021798)	LDB2 (ENSBGRG00000022183) ##22	ENSBGRG00000022583	TAPT1 (ENSBGRG00000022611)	PROM1 (ENSBGRG00000022889)	FGFBP1 (ENSBGRG00000022975)	ENSBGRG00000022998	BST1 (ENSBGRG00000023091)	FAM200B (ENSBGRG00000023235)	FBXL5 (ENSBGRG00000023246)	CC2D2A (ENSBGRG00000023381)	C1QTNF7 (ENSBGRG00000023488)	CPEB2 (ENSBGRG00000023568)	ENSBGRG00000023956	ENSBGRG00000023977	BOD1L1 (ENSBGRG00000023995)	NKX3-2 (ENSBGRG00000024140)
Wild yak	MODERN SPECIES	2058																LDB2 (ENSBMUG00000020147) ##22	ENSBMUG00000020172	TAPT1 (ENSBMUG00000020283)
Bos_b	ANCESTRAL SPECIES	14	ENSGT00950000182850.a.b.a.a	ENSGT00950000183067.a.a	ENSGT00940000164031	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318.h.b.b	ENSGT00940000154521.A	ENSGT00940000157250.p	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b.q.b.c.b	ENSGT01030000234638.b.a.b.q.b.d.b	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00950000183314	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449
Hybrid Bos Indicus	MODERN SPECIES	25	AFAP1 (ENSBIXG00005011288)	PSAPL1 (ENSBIXG00005011305)	SORCS2 (ENSBIXG00005011360)	ENSBIXG00005001113	ENSBIXG00005011501	ENSBIXG00005011511	ENSBIXG00005005918	KIAA0232 (ENSBIXG00005001164)	BLOC1S4 (ENSBIXG00005001177)	ENSBIXG00005011841	ENSBIXG00005012224	ENSBIXG00005005481	ENSBIXG00005012673	CLRN2 (ENSBIXG00005005831)	QDPR (ENSBIXG00005012816)	LDB2 (ENSBIXG00005012921) ##22	ENSBIXG00005012958	TAPT1 (ENSBIXG00005012970)	ENSBIXG00005013008	FGFBP1 (ENSBIXG00005013030)	ENSBIXG00005007111	BST1 (ENSBIXG00005013077)	FAM200B (ENSBIXG00005013096)	FBXL5 (ENSBIXG00005006115)	CC2D2A (ENSBIXG00005013256)	C1QTNF7 (ENSBIXG00005001533)	CPEB2 (ENSBIXG00005013572)	ENSBIXG00005013646	BOD1L1 (ENSBIXG00005013673)	NKX3-2 (ENSBIXG00005001678)	RAB28 (ENSBIXG00005013804)
Cow	MODERN SPECIES	25	ABLIM2 (ENSBTAG00000015926)	AFAP1 (ENSBTAG00000012464)	SORCS2 (ENSBTAG00000027434)	GRPEL1 (ENSBTAG00000010181)	TADA2B (ENSBTAG00000010185)	CCDC96 (ENSBTAG00000047810)	TBC1D14 (ENSBTAG00000005493)	KIAA0232 (ENSBTAG00000019427)	BLOC1S4 (ENSBTAG00000003766)	MRFAP1L1 (ENSBTAG00000046936)	ENSBTAG00000049123	ENSBTAG00000019584	ENSBTAG00000027825	CLRN2 (ENSBTAG00000003357)	QDPR (ENSBTAG00000040333)	LDB2 (ENSBTAG00000014058) ##22	TAPT1 (ENSBTAG00000019451)	PROM1 (ENSBTAG00000013736)	FGFBP1 (ENSBTAG00000031497)	CD38 (ENSBTAG00000013569)	BST1 (ENSBTAG00000006156)	FAM200B (ENSBTAG00000055011)	FBXL5 (ENSBTAG00000021214)	ENSBTAG00000050294	CC2D2A (ENSBTAG00000018638)	C1QTNF7 (ENSBTAG00000010343)	CPEB2 (ENSBTAG00000019847)	ENSBTAG00000050349	BOD1L1 (ENSBTAG00000004316)	NKX3-2 (ENSBTAG00000010896)	RAB28 (ENSBTAG00000003218)
American bison	MODERN SPECIES	3293	ENSBBBG00000003283	GPX6 (ENSBBBG00000014377)	GPX5 (ENSBBBG00000003293)	SCAND3 (ENSBBBG00000003300)	ENSBBBG00000003317	TRIM27 (ENSBBBG00000003320)	ZNF311 (ENSBBBG00000003327)	ENSBBBG00000014440	ENSBBBG00000014447	ENSBBBG00000003341	ENSBBBG00000014486	ENSBBBG00000003361	ENSBBBG00000003368	CLRN2 (ENSBBBG00000014495)	QDPR (ENSBBBG00000003397)	LDB2 (ENSBBBG00000014565) ##22	TAPT1 (ENSBBBG00000014576)	PROM1 (ENSBBBG00000003515)	FGFBP1 (ENSBBBG00000014610)	ENSBBBG00000003529	BST1 (ENSBBBG00000003553)	FBXL5 (ENSBBBG00000014676)	CC2D2A (ENSBBBG00000014731)	C1QTNF7 (ENSBBBG00000014745)	ENSBBBG00000002832	ENSBBBG00000003647	BOD1L1 (ENSBBBG00000014848)	NKX3-2 (ENSBBBG00000003659)	RAB28 (ENSBBBG00000014911)	ENSBBBG00000001214	CLNK (ENSBBBG00000001160)
Caprinae	ANCESTRAL SPECIES	13	ENSGT00940000164031	ENSGT01030000234563.b.a.a.t	ENSGT01030000234563.b.a.a.s	ENSGT00390000005589.a.a	ENSGT00940000157318.h.b.a.a.a	ENSGT00940000154521.A	ENSGT00940000157250.p	ENSGT00390000018549	ENSGT00390000006790.b	ENSGT00940000155541.C	ENSGT01030000234638.b.a.b.q.b.c.b	ENSGT01030000234638.b.a.b.q.b.d	ENSGT01030000234638.b.a.b.q.b.c.a	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000156198.d	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000160595.b
Rambouillet Sheep	MODERN SPECIES	22	PSAPL1 (ENSOARG00020011199)	SORCS2 (ENSOARG00020010444)	GRPEL1 (ENSOARG00020010391)	ENSOARG00020010320	ENSOARG00020010297	TBC1D14 (ENSOARG00020009685)	KIAA0232 (ENSOARG00020009528)	BLOC1S4 (ENSOARG00020009507)	ENSOARG00020009488	ENSOARG00020009021	ENSOARG00020008117	ENSOARG00020007096	ENSOARG00020006164	CLRN2 (ENSOARG00020006122)	QDPR (ENSOARG00020006022)	LDB2 (ENSOARG00020005920) ##22	TAPT1 (ENSOARG00020005806)	PROM1 (ENSOARG00020005636)	FGFBP1 (ENSOARG00020005605)	FBXL5 (ENSOARG00020005427)	ENSOARG00020005331	C1QTNF7 (ENSOARG00020005280)	CPEB2 (ENSOARG00020004782)	ENSOARG00020004717	ENSOARG00020003695	BOD1L1 (ENSOARG00020003558)	NKX3-2 (ENSOARG00020003540)	RAB28 (ENSOARG00020003366)	ENSOARG00020003330	HS3ST1 (ENSOARG00020003309)	WDR1 (ENSOARG00020003043)
Goat	DUPLICATION
Goat	MODERN SPECIES	25	ENSCHIG00000017846	GRPEL1 (ENSCHIG00000026236)	ENSCHIG00000017445	ENSCHIG00000009998	TBC1D14 (ENSCHIG00000015595)	KIAA0232 (ENSCHIG00000018335)	BLOC1S4 (ENSCHIG00000008679)	ENSCHIG00000008557	ENSCHIG00000014705	ENSCHIG00000025479	ENSCHIG00000016572	ENSCHIG00000011403	CLRN2 (ENSCHIG00000021626)	QDPR (ENSCHIG00000010473)	ENSCHIG00000023084 ##22	ENSCHIG00000009869 ##22	TAPT1 (ENSCHIG00000013524)	PROM1 (ENSCHIG00000026198)	FGFBP1 (ENSCHIG00000008489)	ENSCHIG00000003874	BST1 (ENSCHIG00000020433)	FBXL5 (ENSCHIG00000011040)	CC2D2A (ENSCHIG00000020491)	C1QTNF7 (ENSCHIG00000011783)	CPEB2 (ENSCHIG00000022582)	ENSCHIG00000022972	ENSCHIG00000016991	NKX3-2 (ENSCHIG00000011125)	RAB28 (ENSCHIG00000022313)	HS3ST1 (ENSCHIG00000004675)	ZNF518B (ENSCHIG00000007609)
Goat	MODERN SPECIES	25	PSAPL1 (ENSCHIG00000004800)	ENSCHIG00000017846	GRPEL1 (ENSCHIG00000026236)	ENSCHIG00000017445	ENSCHIG00000009998	TBC1D14 (ENSCHIG00000015595)	KIAA0232 (ENSCHIG00000018335)	BLOC1S4 (ENSCHIG00000008679)	ENSCHIG00000008557	ENSCHIG00000014705	ENSCHIG00000025479	ENSCHIG00000016572	ENSCHIG00000011403	CLRN2 (ENSCHIG00000021626)	QDPR (ENSCHIG00000010473)	ENSCHIG00000023084 ##22	ENSCHIG00000009869 ##22	TAPT1 (ENSCHIG00000013524)	PROM1 (ENSCHIG00000026198)	FGFBP1 (ENSCHIG00000008489)	ENSCHIG00000003874	BST1 (ENSCHIG00000020433)	FBXL5 (ENSCHIG00000011040)	CC2D2A (ENSCHIG00000020491)	C1QTNF7 (ENSCHIG00000011783)	CPEB2 (ENSCHIG00000022582)	ENSCHIG00000022972	ENSCHIG00000016991	NKX3-2 (ENSCHIG00000011125)	RAB28 (ENSCHIG00000022313)	HS3ST1 (ENSCHIG00000004675)
Cetacea	ANCESTRAL SPECIES	12	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000155046.ib	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430.b	ENSGT00990000204159	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT01030000234638.b.a.b.q.a	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00960000191062	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449
Blue whale	MODERN SPECIES	16	ADGRA3 (ENSBMSG00010002059)	KCNIP4 (ENSBMSG00010002394)	ENSBMSG00010002859	PACRGL (ENSBMSG00010002900)	SLIT2 (ENSBMSG00010003178)	ENSBMSG00010003522	LCORL (ENSBMSG00010003554)	NCAPG (ENSBMSG00010003593)	DCAF16 (ENSBMSG00010003609)	FAM184B (ENSBMSG00010003615)	ENSBMSG00010003627	LAP3 (ENSBMSG00010003642)	ENSBMSG00010003653	CLRN2 (ENSBMSG00010003668)	QDPR (ENSBMSG00010003709)	LDB2 (ENSBMSG00010003750) ##22	ENSBMSG00010003772	TAPT1 (ENSBMSG00010003792)	PROM1 (ENSBMSG00010003917)	FGFBP1 (ENSBMSG00010004072)	CD38 (ENSBMSG00010004087)	BST1 (ENSBMSG00010004113)	FBXL5 (ENSBMSG00010004146)	CC2D2A (ENSBMSG00010004193)	C1QTNF7 (ENSBMSG00010004225)	CPEB2 (ENSBMSG00010004303)	BOD1L1 (ENSBMSG00010004697)	NKX3-2 (ENSBMSG00010004708)	RAB28 (ENSBMSG00010004737)	HS3ST1 (ENSBMSG00010004771)	ENSBMSG00010004830
Odontoceti	DUPLICATION
Odontoceti	DUPLICATION
Odontoceti	ANCESTRAL SPECIES	11	ENSGT00940000158402	ENSGT00940000155046.ib	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430.b	ENSGT00990000204159	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT01030000234638.b.a.b.q.a	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a.f ##22	ENSGT00960000191062	ENSGT00390000005639.a.a.e.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846
Odontoceti_a	ANCESTRAL SPECIES	22	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430.a.b	ENSGT00990000204159	ENSGT00390000012430.b	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a.f ##22	ENSGT00960000191062	ENSGT00390000005639.a.a.e.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b
Odontoceti_b	ANCESTRAL SPECIES	11	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430.a.b	ENSGT00990000204159	ENSGT00390000012430.b	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a.f ##22	ENSGT00960000191062	ENSGT00390000005639.a.a.e.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b
Vaquita	MODERN SPECIES	16	ENSPSNG00000020646	PPARGC1A (ENSPSNG00000020569) ##21	ADGRA3 (ENSPSNG00000020337)	KCNIP4 (ENSPSNG00000019756)	PACRGL (ENSPSNG00000019499)	SLIT2 (ENSPSNG00000017795)	ENSPSNG00000017595	LCORL (ENSPSNG00000017486)	NCAPG (ENSPSNG00000017383)	DCAF16 (ENSPSNG00000017358)	FAM184B (ENSPSNG00000017332)	MED28 (ENSPSNG00000017283)	ENSPSNG00000017095	CLRN2 (ENSPSNG00000017033)	QDPR (ENSPSNG00000016877)	LDB2 (ENSPSNG00000016774) ##22	TAPT1 (ENSPSNG00000015826)	ENSPSNG00000015629	FGFBP1 (ENSPSNG00000015595)	CD38 (ENSPSNG00000015460)	BST1 (ENSPSNG00000015391)	FBXL5 (ENSPSNG00000015159)	CC2D2A (ENSPSNG00000015083)	C1QTNF7 (ENSPSNG00000014994)	CPEB2 (ENSPSNG00000014241)	BOD1L1 (ENSPSNG00000013797)	NKX3-2 (ENSPSNG00000013718)	RAB28 (ENSPSNG00000013465)	HS3ST1 (ENSPSNG00000013379)	CLNK (ENSPSNG00000012997)	ZNF518B (ENSPSNG00000012961)
Sperm whale	MODERN SPECIES	18	ADGRA3 (ENSPCTG00005011845)	KCNIP4 (ENSPCTG00005012048)	PACRGL (ENSPCTG00005012723)	SLIT2 (ENSPCTG00005013113)	ENSPCTG00005015108	LCORL (ENSPCTG00005015166)	NCAPG (ENSPCTG00005015312)	DCAF16 (ENSPCTG00005015428)	ENSPCTG00005015449	FAM184B (ENSPCTG00005015473)	MED28 (ENSPCTG00005015699)	LAP3 (ENSPCTG00005015721)	ENSPCTG00005015805	CLRN2 (ENSPCTG00005015878)	QDPR (ENSPCTG00005015942)	LDB2 (ENSPCTG00005016082) ##22	ENSPCTG00005016185	TAPT1 (ENSPCTG00005016236)	PROM1 (ENSPCTG00005016296)	FGFBP1 (ENSPCTG00005016603)	CD38 (ENSPCTG00005016625)	BST1 (ENSPCTG00005016657)	FAM200B (ENSPCTG00005016787)	FBXL5 (ENSPCTG00005016819)	CC2D2A (ENSPCTG00005017066)	C1QTNF7 (ENSPCTG00005017327)	CPEB2 (ENSPCTG00005017448)	BOD1L1 (ENSPCTG00005018351)	NKX3-2 (ENSPCTG00005018485)	RAB28 (ENSPCTG00005018522)	HS3ST1 (ENSPCTG00005018663)
Odontoceti	ANCESTRAL SPECIES																	ENSGT00390000005639.a.a.e.b ##22
Odontoceti_a	ANCESTRAL SPECIES																	ENSGT00390000005639.a.a.e.b ##22
Dolphin	MODERN SPECIES	1780																LDB2 (ENSTTRG00000013661) ##22
Sperm whale	MODERN SPECIES	17	DUSP6 (ENSPCTG00005021369)	ENSPCTG00005021346	KITLG (ENSPCTG00005021308)	TMTC3 (ENSPCTG00005021241)	CEP290 (ENSPCTG00005020898)	C6H12orf29 (ENSPCTG00005020851)	C12orf50 (ENSPCTG00005020740)	MGAT4C (ENSPCTG00005020711)	NTS (ENSPCTG00005020672)	RASSF9 (ENSPCTG00005020645)	ALX1 (ENSPCTG00005020630)	LRRIQ1 (ENSPCTG00005020500)	TSPAN19 (ENSPCTG00005020436)	SLC6A15 (ENSPCTG00005020350)	TMTC2 (ENSPCTG00005020242)	ENSPCTG00005020220 ##22	METTL25 (ENSPCTG00005020146)	CCDC59 (ENSPCTG00005020122)	PPFIA2 (ENSPCTG00005017124)	ACSS3 (ENSPCTG00005016578)	LIN7A (ENSPCTG00005016469)	MYF5 (ENSPCTG00005016429)	MYF6 (ENSPCTG00005016374)	PTPRQ (ENSPCTG00005015293)	OTOGL (ENSPCTG00005013033)	ENSPCTG00005012953	PPP1R12A (ENSPCTG00005012575)	PAWR (ENSPCTG00005012474)	SYT1 (ENSPCTG00005012311)	NAV3 (ENSPCTG00005010415)	E2F7 (ENSPCTG00005009995)
Odontoceti	ANCESTRAL SPECIES	11	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000155046.ib	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430.b	ENSGT00990000204159	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT01030000234638.b.a.b.q.a	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a.f ##22	ENSGT00960000191062	ENSGT00390000005639.a.a.e.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833
Odontoceti_a	ANCESTRAL SPECIES	22	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430.a.b	ENSGT00990000204159	ENSGT00390000012430.b	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a.f ##22	ENSGT00960000191062	ENSGT00390000005639.a.a.e.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449
Odontoceti_b	ANCESTRAL SPECIES	11	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430.a.b	ENSGT00990000204159	ENSGT00390000012430.b	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a.f ##22	ENSGT00960000191062	ENSGT00390000005639.a.a.e.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449
Monodontidae	ANCESTRAL SPECIES	9	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000155046.ib	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430.a.b	ENSGT00990000204159	ENSGT00390000012430.b	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a.f ##22	ENSGT00960000191062	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846
Narwhal	MODERN SPECIES	307	ENSMMNG00015008863	ADGRA3 (ENSMMNG00015008884)	KCNIP4 (ENSMMNG00015008956)	PACRGL (ENSMMNG00015009050)	SLIT2 (ENSMMNG00015009152)	ENSMMNG00015009273	ENSMMNG00015009280	LCORL (ENSMMNG00015009296)	NCAPG (ENSMMNG00015007354)	DCAF16 (ENSMMNG00015007397)	FAM184B (ENSMMNG00015007424)	MED28 (ENSMMNG00015007473)	LAP3 (ENSMMNG00015007496)	CLRN2 (ENSMMNG00015007529)	QDPR (ENSMMNG00015007572)	LDB2 (ENSMMNG00015007632) ##22	ENSMMNG00015007661	TAPT1 (ENSMMNG00015007681)	PROM1 (ENSMMNG00015007762)	FGFBP1 (ENSMMNG00015007939)	CD38 (ENSMMNG00015007949)	BST1 (ENSMMNG00015007970)	FBXL5 (ENSMMNG00015007995)	CC2D2A (ENSMMNG00015008058)	C1QTNF7 (ENSMMNG00015008166)	CPEB2 (ENSMMNG00015008205)	BOD1L1 (ENSMMNG00015008275)	NKX3-2 (ENSMMNG00015008382)	RAB28 (ENSMMNG00015008398)	HS3ST1 (ENSMMNG00015008431)	CLNK (ENSMMNG00015008444)
Beluga whale	MODERN SPECIES	77	PACRGL (ENSDLEG00000014457)	SLIT2 (ENSDLEG00000014508)	ENSDLEG00000014713	ENSDLEG00000014730	PITPNA (ENSDLEG00000014743)	LCORL (ENSDLEG00000014752)	LCORL (ENSDLEG00000014767)	NCAPG (ENSDLEG00000014792)	ENSDLEG00000015016	ENSDLEG00000015021	FAM184B (ENSDLEG00000015028)	MED28 (ENSDLEG00000015066)	LAP3 (ENSDLEG00000015076)	CLRN2 (ENSDLEG00000015093)	QDPR (ENSDLEG00000015103)	LDB2 (ENSDLEG00000015128) ##22	ENSDLEG00000015152	TAPT1 (ENSDLEG00000015167)	PROM1 (ENSDLEG00000015203)	FGFBP1 (ENSDLEG00000015235)	CD38 (ENSDLEG00000015250)	BST1 (ENSDLEG00000015273)	FBXL5 (ENSDLEG00000015297)	CC2D2A (ENSDLEG00000015352)	C1QTNF7 (ENSDLEG00000015613)	CPEB2 (ENSDLEG00000015633)	BOD1L1 (ENSDLEG00000015686)	NKX3-2 (ENSDLEG00000015749)	RAB28 (ENSDLEG00000015762)	ENSDLEG00000015779	HS3ST1 (ENSDLEG00000015791)
Camelidae	ANCESTRAL SPECIES	22	ENSGT00900000143693	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b
Arabian camel	MODERN SPECIES	11	PPARGC1A (ENSCDRG00005015905) ##21	GBA3 (ENSCDRG00005016157)	ADGRA3 (ENSCDRG00005016284)	KCNIP4 (ENSCDRG00005017078)	PACRGL (ENSCDRG00005017336)	SLIT2 (ENSCDRG00005017665)	LCORL (ENSCDRG00005019406)	NCAPG (ENSCDRG00005019491)	DCAF16 (ENSCDRG00005019512)	ENSCDRG00005019521	FAM184B (ENSCDRG00005019524)	MED28 (ENSCDRG00005019543)	LAP3 (ENSCDRG00005019557)	CLRN2 (ENSCDRG00005019615)	QDPR (ENSCDRG00005019647)	LDB2 (ENSCDRG00005019698) ##22	TAPT1 (ENSCDRG00005019761)	PROM1 (ENSCDRG00005020057)	FGFBP1 (ENSCDRG00005020296)	CD38 (ENSCDRG00005020299)	BST1 (ENSCDRG00005020313)	FBXL5 (ENSCDRG00005020335)	CC2D2A (ENSCDRG00005020371)	C1QTNF7 (ENSCDRG00005020471)	CPEB2 (ENSCDRG00005020539)	ENSCDRG00005020797	ENSCDRG00005020805	NKX3-2 (ENSCDRG00005020825)	RAB28 (ENSCDRG00005020832)	ENSCDRG00005020849	HS3ST1 (ENSCDRG00005020860)
Alpaca	MODERN SPECIES	2221																LDB2 (ENSVPAG00000002146) ##22	TAPT1 (ENSVPAG00000002142)	PROM1 (ENSVPAG00000002135)	FGFBP1 (ENSVPAG00000002134)	CD38 (ENSVPAG00000002125)
Laurasiatheria_b	ANCESTRAL SPECIES	8	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00990000204159	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00960000191062	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT01030000235096	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000156198.d	ENSGT00940000161843
Carnivora	ANCESTRAL SPECIES	5	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00990000204159	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00960000191062	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT01030000235096	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000156198.d	ENSGT00940000161843
Felidae	ANCESTRAL SPECIES	4	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430	ENSGT00990000204159	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00960000191062	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449
Panthera	ANCESTRAL SPECIES	5	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430	ENSGT00990000204159	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00960000191062	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449
Tiger	MODERN SPECIES	439	PPARGC1A (ENSPTIG00000007378) ##21	GBA3 (ENSPTIG00000009959)	ADGRA3 (ENSPTIG00000011265)	KCNIP4 (ENSPTIG00000012906)	PACRGL (ENSPTIG00000017096)	SLIT2 (ENSPTIG00000019043)	LCORL (ENSPTIG00000007463)	NCAPG (ENSPTIG00000010747)	DCAF16 (ENSPTIG00000005268)	ENSPTIG00000005270	FAM184B (ENSPTIG00000012636)	MED28 (ENSPTIG00000013729)	LAP3 (ENSPTIG00000013871)	CLRN2 (ENSPTIG00000015501)	QDPR (ENSPTIG00000015700)	LDB2 (ENSPTIG00000017280) ##22	TAPT1 (ENSPTIG00000019188)	PROM1 (ENSPTIG00000020511)	CD38 (ENSPTIG00000009575)	BST1 (ENSPTIG00000010414)	FAM200B (ENSPTIG00000005673)	FBXL5 (ENSPTIG00000011095)	CC2D2A (ENSPTIG00000013730)	C1QTNF7 (ENSPTIG00000014769)	ENSPTIG00000015956	BOD1L1 (ENSPTIG00000017108)	RAB28 (ENSPTIG00000019079)
Panthera_a	ANCESTRAL SPECIES	2	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430	ENSGT00990000204159	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00960000191062	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449
leopard	MODERN SPECIES	25	PPARGC1A (ENSPPRG00000001711) ##21	GBA3 (ENSPPRG00000000195)	ADGRA3 (ENSPPRG00000022711)	KCNIP4 (ENSPPRG00000023823)	PACRGL (ENSPPRG00000024486)	SLIT2 (ENSPPRG00000024875)	LCORL (ENSPPRG00000011434)	NCAPG (ENSPPRG00000009186)	DCAF16 (ENSPPRG00000019998)	ENSPPRG00000019983	FAM184B (ENSPPRG00000008574)	MED28 (ENSPPRG00000007960)	LAP3 (ENSPPRG00000007349)	CLRN2 (ENSPPRG00000006945)	QDPR (ENSPPRG00000006672)	LDB2 (ENSPPRG00000005287) ##22	TAPT1 (ENSPPRG00000003680)	PROM1 (ENSPPRG00000002638)	CD38 (ENSPPRG00000015893)	BST1 (ENSPPRG00000012437)	FAM200B (ENSPPRG00000019022)	FBXL5 (ENSPPRG00000011702)	CC2D2A (ENSPPRG00000010620)	C1QTNF7 (ENSPPRG00000009626)	CPEB2 (ENSPPRG00000008207)	BOD1L1 (ENSPPRG00000002845)	NKX3-2 (ENSPPRG00000001131)	ENSPPRG00000001086	RAB28 (ENSPPRG00000000957)	CLNK (ENSPPRG00000000383)	ZNF518B (ENSPPRG00000018066)
lion	MODERN SPECIES	4	PPARGC1A (ENSPLOG00000015341) ##21	GBA3 (ENSPLOG00000015752)	ADGRA3 (ENSPLOG00000015872)	KCNIP4 (ENSPLOG00000016314)	PACRGL (ENSPLOG00000016813)	SLIT2 (ENSPLOG00000017126)	LCORL (ENSPLOG00000018632)	NCAPG (ENSPLOG00000018793)	DCAF16 (ENSPLOG00000018834)	ENSPLOG00000018846	FAM184B (ENSPLOG00000018870)	MED28 (ENSPLOG00000019074)	LAP3 (ENSPLOG00000019113)	CLRN2 (ENSPLOG00000019148)	QDPR (ENSPLOG00000019184)	LDB2 (ENSPLOG00000019312) ##22	ENSPLOG00000019558	TAPT1 (ENSPLOG00000019592)	PROM1 (ENSPLOG00000019624)	FGFBP1 (ENSPLOG00000019894)	CD38 (ENSPLOG00000019968)	ENSPLOG00000000109	BST1 (ENSPLOG00000000121)	FAM200B (ENSPLOG00000000149)	FBXL5 (ENSPLOG00000000191)	CC2D2A (ENSPLOG00000000281)	C1QTNF7 (ENSPLOG00000000338)	CPEB2 (ENSPLOG00000000382)	BOD1L1 (ENSPLOG00000000511)	NKX3-2 (ENSPLOG00000000588)	RAB28 (ENSPLOG00000000656)
Cat	MODERN SPECIES	235	PPARGC1A (ENSFCAG00000000043) ##21	GBA3 (ENSFCAG00000031717)	ADGRA3 (ENSFCAG00000027302)	KCNIP4 (ENSFCAG00000014899)	PACRGL (ENSFCAG00000035192)	SLIT2 (ENSFCAG00000031735)	LCORL (ENSFCAG00000029474)	NCAPG (ENSFCAG00000030778)	DCAF16 (ENSFCAG00000002836)	ENSFCAG00000038117	FAM184B (ENSFCAG00000002835)	MED28 (ENSFCAG00000041406)	LAP3 (ENSFCAG00000026136)	CLRN2 (ENSFCAG00000002833)	QDPR (ENSFCAG00000002832)	LDB2 (ENSFCAG00000010092) ##22	ENSFCAG00000052183	TAPT1 (ENSFCAG00000001369)	PROM1 (ENSFCAG00000015080)	ENSFCAG00000047207	FGFBP1 (ENSFCAG00000006111)	ENSFCAG00000023787	CD38 (ENSFCAG00000044616)	BST1 (ENSFCAG00000011131)	FBXL5 (ENSFCAG00000030744)	CC2D2A (ENSFCAG00000010627)	C1QTNF7 (ENSFCAG00000036933)	CPEB2 (ENSFCAG00000027193)	ENSFCAG00000052421	BOD1L1 (ENSFCAG00000001201)	NKX3-2 (ENSFCAG00000033775)
Caniformia	ANCESTRAL SPECIES	7	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00990000204159	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00960000191062	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT01030000235096	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000156198.d	ENSGT00940000161843
Canidae	ANCESTRAL SPECIES	21	ENSGT00950000183167.a.b.a	ENSGT00940000159880	ENSGT00940000158858	ENSGT00390000013284	ENSGT00390000008738	ENSGT00530000063371.A	ENSGT00940000162861	ENSGT00390000000377	ENSGT00940000153203.B	ENSGT00950000186028	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000156198.d	ENSGT00940000161843	ENSGT00940000161833.i.a	ENSGT00940000160449
Red fox	MODERN SPECIES	1	NSD2 (ENSVVUG00000023814)	LETM1 (ENSVVUG00000023797)	FGFR3 (ENSVVUG00000015935)	TACC3 (ENSVVUG00000015594)	TMEM129 (ENSVVUG00000015588)	SLBP (ENSVVUG00000015578)	FAM53A (ENSVVUG00000015571)	UVSSA (ENSVVUG00000015547)	MAEA (ENSVVUG00000015526)	ENSVVUG00000015521	FAM184B (ENSVVUG00000015510)	MED28 (ENSVVUG00000015489)	LAP3 (ENSVVUG00000015485)	CLRN2 (ENSVVUG00000015482)	QDPR (ENSVVUG00000015478)	LDB2 (ENSVVUG00000015458) ##22	TAPT1 (ENSVVUG00000015407)	PROM1 (ENSVVUG00000015384)	ENSVVUG00000015374	FGFBP1 (ENSVVUG00000015372)	CD38 (ENSVVUG00000015370)	BST1 (ENSVVUG00000015350)	FAM200B (ENSVVUG00000015346)	FBXL5 (ENSVVUG00000015338)	CC2D2A (ENSVVUG00000015328)	C1QTNF7 (ENSVVUG00000015317)	ENSVVUG00000015311	CPEB2 (ENSVVUG00000015140)	BOD1L1 (ENSVVUG00000015114)	NKX3-2 (ENSVVUG00000015109)	RAB28 (ENSVVUG00000015102)
Canis_lupus	ANCESTRAL SPECIES	23	ENSGT00940000159880	ENSGT00940000158858	ENSGT00390000013284	ENSGT00390000008738	ENSGT00530000063371.A	ENSGT00940000162861	ENSGT00390000000377	ENSGT00940000153203.B	ENSGT00950000186028	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00940000155341.h.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000156198.d	ENSGT00940000161843	ENSGT00940000166876	ENSGT00940000161833.j
Dingo	MODERN SPECIES	138	TACC3 (ENSCAFG00020012340)	TMEM129 (ENSCAFG00020012337)	SLBP (ENSCAFG00020012334)	FAM53A (ENSCAFG00020012319)	NKX1-1 (ENSCAFG00020012312)	UVSSA (ENSCAFG00020012302)	MAEA (ENSCAFG00020012285)	ENSCAFG00020012281	FAM184B (ENSCAFG00020012270)	MED28 (ENSCAFG00020012266)	LAP3 (ENSCAFG00020012262)	CLRN2 (ENSCAFG00020012251)	QDPR (ENSCAFG00020012248)	ENSCAFG00020012245	ENSCAFG00020012229	LDB2 (ENSCAFG00020012223) ##22	TAPT1 (ENSCAFG00020012130)	PROM1 (ENSCAFG00020011597)	ENSCAFG00020011578	FGFBP1 (ENSCAFG00020011576)	CD38 (ENSCAFG00020011563)	BST1 (ENSCAFG00020011559)	FAM200B (ENSCAFG00020011557)	FBXL5 (ENSCAFG00020011555)	ENSCAFG00020011553	CC2D2A (ENSCAFG00020011458)	C1QTNF7 (ENSCAFG00020011417)	CPEB2 (ENSCAFG00020011244)	ENSCAFG00020011215	ENSCAFG00020011204	NKX3-2 (ENSCAFG00020011200)
Dog	MODERN SPECIES	22	TACC3 (ENSCAFG00845013476)	TMEM129 (ENSCAFG00845000213)	SLBP (ENSCAFG00845000261)	FAM53A (ENSCAFG00845000302)	NKX1-1 (ENSCAFG00845000317)	UVSSA (ENSCAFG00845000348)	ENSCAFG00845000407	ENSCAFG00845000433	ENSCAFG00845000449	MED28 (ENSCAFG00845000492)	LAP3 (ENSCAFG00845000510)	CLRN2 (ENSCAFG00845000538)	QDPR (ENSCAFG00845000600)	ENSCAFG00845000652	ENSCAFG00845000676	LDB2 (ENSCAFG00845000708) ##22	TAPT1 (ENSCAFG00845000756)	PROM1 (ENSCAFG00845000922)	ENSCAFG00845001269	FGFBP1 (ENSCAFG00845001279)	CD38 (ENSCAFG00845001294)	FAM200B (ENSCAFG00845001332)	BST1 (ENSCAFG00845001361)	FBXL5 (ENSCAFG00845001403)	CC2D2A (ENSCAFG00845001505)	ENSCAFG00845001714	C1QTNF7 (ENSCAFG00845001735)	CPEB2 (ENSCAFG00845001961)	BOD1L1 (ENSCAFG00845002214)	NKX3-2 (ENSCAFG00845002262)	RAB28 (ENSCAFG00845002304)
Caniformia_b	ANCESTRAL SPECIES	5	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00990000204159	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00960000191062	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT01030000235096	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833
Mustelinae	ANCESTRAL SPECIES	112	ENSGT00940000155800	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00960000191062	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT01030000235096	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833
Ferret	MODERN SPECIES	343								ENSMPUG00000002310	ENSMPUG00000002301	NCAPG (ENSMPUG00000002292)	FAM184B (ENSMPUG00000002280)	MED28 (ENSMPUG00000002271)	LAP3 (ENSMPUG00000002268)	CLRN2 (ENSMPUG00000002264)	QDPR (ENSMPUG00000002260)	LDB2 (ENSMPUG00000002253) ##22	TAPT1 (ENSMPUG00000002247)	PROM1 (ENSMPUG00000002149)	FGFBP1 (ENSMPUG00000019123)	ENSMPUG00000002145	BST1 (ENSMPUG00000002139)	ENSMPUG00000002137	FBXL5 (ENSMPUG00000002133)	CC2D2A (ENSMPUG00000002124)	C1QTNF7 (ENSMPUG00000002122)	ENSMPUG00000002117	ENSMPUG00000002116
American mink	MODERN SPECIES	32	ENSNVIG00000012944	ADGRA3 (ENSNVIG00000012904)	KCNIP4 (ENSNVIG00000012734)	PACRL (ENSNVIG00000012630)	SLIT2 (ENSNVIG00000012226)	ENSNVIG00000012188	LCORL (ENSNVIG00000012088)	NCAPG (ENSNVIG00000012054)	ENSNVIG00000012047	DCA16 (ENSNVIG00000012046)	FAM184B (ENSNVIG00000012028)	MED28 (ENSNVIG00000011999)	LAP3 (ENSNVIG00000011980)	CLRN2 (ENSNVIG00000011967)	QDPR (ENSNVIG00000011920)	LDB2 (ENSNVIG00000011902) ##22	ENSNVIG00000011889	TAPT1 (ENSNVIG00000011854)	PROM1 (ENSNVIG00000011779)	FGFBP1 (ENSNVIG00000011771)
Ursidae	ANCESTRAL SPECIES	29	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00990000204159	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000160595.b
Giant Panda	MODERN SPECIES	2	PPARGC1A (ENSAMEG00000010421) ##21	GBA3 (ENSAMEG00000006494)	ADGRA3 (ENSAMEG00000006461)	KCNIP4 (ENSAMEG00000006445)	PACRGL (ENSAMEG00000006436)	SLIT2 (ENSAMEG00000006196)	LCORL (ENSAMEG00000000192)	NCAPG (ENSAMEG00000000194)	DCAF16 (ENSAMEG00000019722)	ENSAMEG00000028828	FAM184B (ENSAMEG00000000208)	MED28 (ENSAMEG00000001760)	LAP3 (ENSAMEG00000001748)	CLRN2 (ENSAMEG00000001743)	QDPR (ENSAMEG00000001735)	LDB2 (ENSAMEG00000001733) ##22	TAPT1 (ENSAMEG00000001715)	PROM1 (ENSAMEG00000001591)	FGFBP1 (ENSAMEG00000001588)	CD38 (ENSAMEG00000001557)	BST1 (ENSAMEG00000001548)	FAM200B (ENSAMEG00000029254)	FBXL5 (ENSAMEG00000001527)	CC2D2A (ENSAMEG00000001507)	C1QTNF7 (ENSAMEG00000029350)	CPEB2 (ENSAMEG00000001477)	BOD1L1 (ENSAMEG00000009321)	NKX3-2 (ENSAMEG00000031124)	RAB28 (ENSAMEG00000025605)	ENSAMEG00000023519	ENSAMEG00000024188
Ursus	ANCESTRAL SPECIES	136							ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00990000204159	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000161833	ENSGT00390000009416	ENSGT00940000159192	ENSGT00940000157037.a	ENSGT00940000159350	ENSGT00390000012901
Polar bear	MODERN SPECIES	127							LCORL (ENSUMAG00000003387)	NCAPG (ENSUMAG00000003369)	ENSUMAG00000003362	DCAF16 (ENSUMAG00000003355)	FAM184B (ENSUMAG00000003337)	MED28 (ENSUMAG00000003333)	LAP3 (ENSUMAG00000003330)	CLRN2 (ENSUMAG00000003326)	QDPR (ENSUMAG00000003323)	LDB2 (ENSUMAG00000003314) ##22	TAPT1 (ENSUMAG00000003022)	PROM1 (ENSUMAG00000002201)	FGFBP1 (ENSUMAG00000002053)	ENSUMAG00000002009	BST1 (ENSUMAG00000002001)	FAM200B (ENSUMAG00000001995)	FBXL5 (ENSUMAG00000001986)	CC2D2A (ENSUMAG00000001660)	C1QTNF7 (ENSUMAG00000001632)	RAB28 (ENSUMAG00000001339)	WDR1 (ENSUMAG00000000419)	SLC2A9 (ENSUMAG00000000390)	DRD5 (ENSUMAG00000000366)	TMEM128 (ENSUMAG00000000346)	LYAR (ENSUMAG00000000338)
American black bear	DUPLICATION
American black bear	MODERN SPECIES	4617																ENSUAMG00000022611 ##22
American black bear	MODERN SPECIES	1199																ENSUAMG00000021187 ##22
Laurasiatheria_c	ANCESTRAL SPECIES	8	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430	ENSGT00990000204159	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846
Equus	ANCESTRAL SPECIES	12	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT01090000263426	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430	ENSGT00990000204159	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b.k.b	ENSGT00940000154372.a.b.l	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449
Donkey	MODERN SPECIES	22	ENSEASG00005007981	ADGRA3 (ENSEASG00005007978)	KCNIP4 (ENSEASG00005007972)	PACRGL (ENSEASG00005007966)	SLIT2 (ENSEASG00005006059)	ENSEASG00005031721	LCORL (ENSEASG00005005861)	NCAPG (ENSEASG00005005604)	DCAF16 (ENSEASG00005033587)	FAM184B (ENSEASG00005005560)	ENSEASG00005029014	MED28 (ENSEASG00005027254)	LAP3 (ENSEASG00005005555)	CLRN2 (ENSEASG00005005554)	QDPR (ENSEASG00005005553)	LDB2 (ENSEASG00005005549) ##22	TAPT1 (ENSEASG00005005544)	PROM1 (ENSEASG00005005511)	ENSEASG00005005478	ENSEASG00005027907	ENSEASG00005024358	CD38 (ENSEASG00005005470)	BST1 (ENSEASG00005005466)	FAM200B (ENSEASG00005005463)	FBXL5 (ENSEASG00005005458)	CC2D2A (ENSEASG00005005427)	C1QTNF7 (ENSEASG00005037275)	CPEB2 (ENSEASG00005005397)	ENSEASG00005005384	NKX3-2 (ENSEASG00005005373)	RAB28 (ENSEASG00005005367)
Horse	MODERN SPECIES	22	GBA3 (ENSECAG00000014346)	ADGRA3 (ENSECAG00000014865)	KCNIP4 (ENSECAG00000018365)	PACRGL (ENSECAG00000021508)	SLIT2 (ENSECAG00000022407)	ENSECAG00000057886	ENSECAG00000003040	LCORL (ENSECAG00000000648)	NCAPG (ENSECAG00000007470)	DCAF16 (ENSECAG00000002410)	FAM184B (ENSECAG00000013661)	MED28 (ENSECAG00000017465)	LAP3 (ENSECAG00000018272)	CLRN2 (ENSECAG00000039666)	QDPR (ENSECAG00000005662)	LDB2 (ENSECAG00000008556) ##22	TAPT1 (ENSECAG00000011326)	PROM1 (ENSECAG00000013323)	ENSECAG00000051073	ENSECAG00000034729	FGFBP1 (ENSECAG00000040039)	CD38 (ENSECAG00000020720)	BST1 (ENSECAG00000023398)	FAM200B (ENSECAG00000024279)	FBXL5 (ENSECAG00000024327)	CC2D2A (ENSECAG00000025115)	C1QTNF7 (ENSECAG00000007989)	CPEB2 (ENSECAG00000008722)	BOD1L1 (ENSECAG00000010410)	NKX3-2 (ENSECAG00000027948)	RAB28 (ENSECAG00000013994)
Chiroptera	ANCESTRAL SPECIES	9	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00940000165139.b	ENSGT00940000162414.n	ENSGT00390000001577	ENSGT00390000012430	ENSGT00990000204159	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846
Megabat	MODERN SPECIES	2172																LDB2 (ENSPVAG00000002331) ##22
Microchiroptera	ANCESTRAL SPECIES	10	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00940000165139.b	ENSGT00940000162414.n	ENSGT00390000001577	ENSGT00390000012430	ENSGT00990000204159	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846
Greater horseshoe bat	MODERN SPECIES	23	ADGRA3 (ENSRFEG00010001866)	KCNIP4 (ENSRFEG00010001993)	ENSRFEG00010002058	PACRGL (ENSRFEG00010002088)	SLIT2 (ENSRFEG00010002355)	ENSRFEG00010002832	LCORL (ENSRFEG00010002869)	NCAPG (ENSRFEG00010002948)	DCAF16 (ENSRFEG00010002974)	ENSRFEG00010002981	FAM184B (ENSRFEG00010003021)	ENSRFEG00010003059	LAP3 (ENSRFEG00010003082)	CLRN2 (ENSRFEG00010003114)	QDPR (ENSRFEG00010003155)	LDB2 (ENSRFEG00010003253) ##22	TAPT1 (ENSRFEG00010003332)	PROM1 (ENSRFEG00010003394)	ENSRFEG00010003476	ENSRFEG00010003491	ENSRFEG00010003526	BST1 (ENSRFEG00010003563)	FAM200B (ENSRFEG00010003587)	FBXL5 (ENSRFEG00010003620)	CC2D2A (ENSRFEG00010003727)	C1QTNF7 (ENSRFEG00010003876)	ENSRFEG00010003895	CPEB2 (ENSRFEG00010003962)	BOD1L1 (ENSRFEG00010004157)	NKX3-2 (ENSRFEG00010004199)	ENSRFEG00010004231
Microbat	MODERN SPECIES	1304																LDB2 (ENSMLUG00000002700) ##22	TAPT1 (ENSMLUG00000009395)	PROM1 (ENSMLUG00000009351)	FGFBP1 (ENSMLUG00000009347)	CD38 (ENSMLUG00000009334)	BST1 (ENSMLUG00000009316)	FBXL5 (ENSMLUG00000009298)	CC2D2A (ENSMLUG00000009231)	C1QTNF7 (ENSMLUG00000009144)	ENSMLUG00000024762
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000005639.a.a ##22
Common shrew	MODERN SPECIES	5041																LDB2 (ENSSARG00000006608) ##22
Hedgehog	MODERN SPECIES	6482																LDB2 (ENSEEUG00000011653) ##22
Euarchontoglires	ANCESTRAL SPECIES	9	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000165139.b	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00990000204159	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00960000191062	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT01030000235096	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000156198.d
Euarchontoglires_A	ANCESTRAL SPECIES	9	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00990000204159	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00960000191062	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT01030000235096	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000156198.d	ENSGT00940000161843
Tree shrew	MODERN SPECIES	3663																LDB2 (ENSTBEG00000008823) ##22
Glires	ANCESTRAL SPECIES	8	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00990000204159	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00960000191062	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT01030000235096	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000156198.d	ENSGT00940000161843
Lagomorpha	ANCESTRAL SPECIES																	ENSGT00390000005639.a.a ##22
Pika	MODERN SPECIES	3254																ENSOPRG00000016076 ##22
Rabbit	MODERN SPECIES	11	KCNIP4 (ENSOCUG00000002189)	ENSOCUG00000002186	SLIT2 (ENSOCUG00000009517)	LCORL (ENSOCUG00000006802)	NCAPG (ENSOCUG00000006792)	ENSOCUG00000033408	DCAF16 (ENSOCUG00000021289)	FAM184B (ENSOCUG00000001582)	ENSOCUG00000001576	LAP3 (ENSOCUG00000001571)	CLRN2 (ENSOCUG00000001569)	QDPR (ENSOCUG00000005242)	ENSOCUG00000032338	ENSOCUG00000038888	ENSOCUG00000001331	LDB2 (ENSOCUG00000015499) ##22	ENSOCUG00000010603	ENSOCUG00000039041	TAPT1 (ENSOCUG00000002246)	PROM1 (ENSOCUG00000016642)	FGFBP2 (ENSOCUG00000016638)	ENSOCUG00000016623	ENSOCUG00000013846	FGFBP1 (ENSOCUG00000016098)	ENSOCUG00000017793	BST1 (ENSOCUG00000002336)	FBXL5 (ENSOCUG00000011774)	CC2D2A (ENSOCUG00000011765)	C1QTNF7 (ENSOCUG00000016551)	CPEB2 (ENSOCUG00000007950)	ENSOCUG00000034826
Rodentia	ANCESTRAL SPECIES	13	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT01010000227024	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00960000191062	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT01030000235096	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000156198.d	ENSGT00940000161843	ENSGT00940000161833
Rodentia_A	ANCESTRAL SPECIES	20	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT01010000227024	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00960000191062	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT01030000235096	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000156198.d	ENSGT00940000161843	ENSGT00940000161833
Sciuridae	ANCESTRAL SPECIES	19	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00390000001577	ENSGT01010000227024	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00960000191062	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT01030000235096	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000156198.d	ENSGT00940000161843	ENSGT00940000161833
Marmotini	ANCESTRAL SPECIES	26	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT01010000227024	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00960000191062	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT01030000235096	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000156198.d	ENSGT00940000161843	ENSGT00940000164241
Marmotini_b	ANCESTRAL SPECIES	33	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000155725	ENSGT00730000111419	ENSGT00940000162414	ENSGT00390000001577	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192.t	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00960000191062	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT01030000235096	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000164241	ENSGT00950000183099.u.b.a.a.a.b.a
Arctic ground squirrel	MODERN SPECIES	9	PPARGC1A (ENSUPAG00010018212) ##21	GBA3 (ENSUPAG00010018197)	ADGRA3 (ENSUPAG00010018174)	KCNIP4 (ENSUPAG00010017944)	PACRGL (ENSUPAG00010017902)	SLIT2 (ENSUPAG00010017541)	ENSUPAG00010017517	ENSUPAG00010017493	DCAF16 (ENSUPAG00010017485)	NCAPG (ENSUPAG00010017444)	FAM184B (ENSUPAG00010017393)	ENSUPAG00010017366	LAP3 (ENSUPAG00010017358)	CLRN2 (ENSUPAG00010017347)	QDPR (ENSUPAG00010017321)	LDB2 (ENSUPAG00010017297) ##22	ENSUPAG00010017287	TAPT1 (ENSUPAG00010017269)	PROM1 (ENSUPAG00010017205)	FGFBP1 (ENSUPAG00010017197)	CD38 (ENSUPAG00010017184)	BST1 (ENSUPAG00010017165)	FBXL5 (ENSUPAG00010017123)	CC2D2A (ENSUPAG00010017099)	ENSUPAG00010017096	C1QTNF7 (ENSUPAG00010017088)	CPEB2 (ENSUPAG00010017042)	ENSUPAG00010017031	ENSUPAG00010017005	NKX3-2 (ENSUPAG00010016996)	ENSUPAG00010016979
Squirrel	MODERN SPECIES	77	GBA3 (ENSSTOG00000030967)	ADGRA3 (ENSSTOG00000008272)	KCNIP4 (ENSSTOG00000014315)	PACRGL (ENSSTOG00000014307)	SLIT2 (ENSSTOG00000009778)	ENSSTOG00000030554	LCORL (ENSSTOG00000000960)	NCAPG (ENSSTOG00000023744)	DCAF16 (ENSSTOG00000000944)	FAM184B (ENSSTOG00000000931)	ENSSTOG00000000930	LAP3 (ENSSTOG00000000922)	CLRN2 (ENSSTOG00000009920)	QDPR (ENSSTOG00000009916)	ENSSTOG00000034519	LDB2 (ENSSTOG00000002035) ##22	TAPT1 (ENSSTOG00000025519)	PROM1 (ENSSTOG00000020690)	CD38 (ENSSTOG00000005495)	BST1 (ENSSTOG00000023011)	FBXL5 (ENSSTOG00000022023)	CC2D2A (ENSSTOG00000005160)	C1QTNF7 (ENSSTOG00000011103)	ENSSTOG00000030843	ENSSTOG00000002388	BOD1L1 (ENSSTOG00000026900)	NKX3-2 (ENSSTOG00000021803)	ENSSTOG00000004135	ENSSTOG00000021226	HS3ST1 (ENSSTOG00000005820)	CLNK (ENSSTOG00000014009)
Alpin marmot	MODERN SPECIES	9	ADGRA3 (ENSMMMG00000017146)	KCNIP4 (ENSMMMG00000017078)	PACRGL (ENSMMMG00000017055)	SLIT2 (ENSMMMG00000016769)	ENSMMMG00000016741	ENSMMMG00000016736	ENSMMMG00000016717	NCAPG (ENSMMMG00000016692)	ENSMMMG00000016689	DCAF16 (ENSMMMG00000016681)	FAM184B (ENSMMMG00000016657)	ENSMMMG00000016639	LAP3 (ENSMMMG00000016620)	CLRN2 (ENSMMMG00000016613)	QDPR (ENSMMMG00000016605)	LDB2 (ENSMMMG00000016572) ##22	TAPT1 (ENSMMMG00000016512)	PROM1 (ENSMMMG00000016334)	FGFBP1 (ENSMMMG00000016328)	CD38 (ENSMMMG00000016315)	BST1 (ENSMMMG00000016297)	ENSMMMG00000016270	CC2D2A (ENSMMMG00000016237)	C1QTNF7 (ENSMMMG00000016211)	ENSMMMG00000016059	ENSMMMG00000016050	ENSMMMG00000016045	NKX3-2 (ENSMMMG00000016036)	ENSMMMG00000016019	ENSMMMG00000015994	HS3ST1 (ENSMMMG00000015988)
Eurasian red squirrel	MODERN SPECIES	18	GBA3 (ENSSVLG00005014999)	ADGRA3 (ENSSVLG00005015123)	KCNIP4 (ENSSVLG00005015491)	PACRGL (ENSSVLG00005016040)	SLIT2 (ENSSVLG00005016302)	ENSSVLG00005017689	LCORL (ENSSVLG00005017781)	NCAPG (ENSSVLG00005018065)	DCAF16 (ENSSVLG00005018117)	ENSSVLG00005018135	FAM184B (ENSSVLG00005018162)	ENSSVLG00005018337	LAP3 (ENSSVLG00005018397)	CLRN2 (ENSSVLG00005018469)	QDPR (ENSSVLG00005018520)	LDB2 (ENSSVLG00005004808) ##22	ENSSVLG00005004930	TAPT1 (ENSSVLG00005004950)	ENSSVLG00005004971	PROM1 (ENSSVLG00005005100)	FGFBP1 (ENSSVLG00005005657)	CD38 (ENSSVLG00005005673)	BST1 (ENSSVLG00005005749)	FBXL5 (ENSSVLG00005005857)	CC2D2A (ENSSVLG00005005931)	C1QTNF7 (ENSSVLG00005006195)	CPEB2 (ENSSVLG00005006310)	ENSSVLG00005006750	BOD1L1 (ENSSVLG00005006882)	NKX3-2 (ENSSVLG00005006990)	RAB28 (ENSSVLG00005007038)
Hystricomorpha	ANCESTRAL SPECIES	26	ENSGT00940000155800	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b
Naked mole-rat female	MODERN SPECIES	1	KCNIP4 (ENSHGLG00000009003)	ENSHGLG00000009348	ENSHGLG00000042478	PACRGL (ENSHGLG00000049060)	SLIT2 (ENSHGLG00000010533)	ENSHGLG00000003986	LCORL (ENSHGLG00000004100)	NCAPG (ENSHGLG00000004282)	FAM184B (ENSHGLG00000004352)	ENSHGLG00000004397	MED28 (ENSHGLG00000042367)	ENSHGLG00000004764	ENSHGLG00000048773	CLRN2 (ENSHGLG00000042612)	QDPR (ENSHGLG00000005515)	LDB2 (ENSHGLG00000049045) ##22	ENSHGLG00000034321	TAPT1 (ENSHGLG00000006539)	PROM1 (ENSHGLG00000006960)	ENSHGLG00000039232	CD38 (ENSHGLG00000047314)	ENSHGLG00000001621	BST1 (ENSHGLG00000007923)	FBXL5 (ENSHGLG00000008241)	CC2D2A (ENSHGLG00000008572)	C1QTNF7 (ENSHGLG00000008916)	CPEB2 (ENSHGLG00000018058)	ENSHGLG00000045266	BOD1L1 (ENSHGLG00000018076)	NKX3-2 (ENSHGLG00000033026)	RAB28 (ENSHGLG00000048410)
Hystricomorpha_a	ANCESTRAL SPECIES	23	ENSGT00940000155800	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b
Guinea pig	MODERN SPECIES	73	ENSCPOG00000021157	SPON2 (ENSCPOG00000036286)	CTBP1 (ENSCPOG00000026987)	MAEA (ENSCPOG00000011071)	UVSSA (ENSCPOG00000013735)	NKX1-1 (ENSCPOG00000039976)	PACRGL (ENSCPOG00000011800)	SLIT2 (ENSCPOG00000011787)	ENSCPOG00000034518	NCAPG (ENSCPOG00000001220)	FAM184B (ENSCPOG00000012619)	MED28 (ENSCPOG00000012616)	LAP3 (ENSCPOG00000012626)	CLRN2 (ENSCPOG00000037206)	QDPR (ENSCPOG00000008343)	LDB2 (ENSCPOG00000004252) ##22	TAPT1 (ENSCPOG00000007855)	PROM1 (ENSCPOG00000007847)	FGFBP1 (ENSCPOG00000021732)	ENSCPOG00000039177
Hystricomorpha_b	ANCESTRAL SPECIES	37	ENSGT00940000155800	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b
Long-tailed chinchilla	MODERN SPECIES	187	DHX15 (ENSCLAG00000000508)	PPARGC1A (ENSCLAG00000002058) ##21	GBA3 (ENSCLAG00000002378)	ADGRA3 (ENSCLAG00000001094)	KCNIP4 (ENSCLAG00000001455)	PACRGL (ENSCLAG00000001007)	SLIT2 (ENSCLAG00000001413)	ENSCLAG00000002042	LCORL (ENSCLAG00000002297)	NCAPG (ENSCLAG00000000689)	FAM184B (ENSCLAG00000000877)	MED28 (ENSCLAG00000000626)	LAP3 (ENSCLAG00000000942)	CLRN2 (ENSCLAG00000001024)	QDPR (ENSCLAG00000000873)	LDB2 (ENSCLAG00000001146) ##22	TAPT1 (ENSCLAG00000000811)	PROM1 (ENSCLAG00000001277)	FGFBP1 (ENSCLAG00000001767)	CD38 (ENSCLAG00000001844)	BST1 (ENSCLAG00000001991)	ENSCLAG00000000762	FBXL5 (ENSCLAG00000000851)	CC2D2A (ENSCLAG00000001069)	ENSCLAG00000000810	C1QTNF7 (ENSCLAG00000000794)	ENSCLAG00000000949	ENSCLAG00000000886	BOD1L1 (ENSCLAG00000001588)	NKX3-2 (ENSCLAG00000002039)	RAB28 (ENSCLAG00000002201)
Degu	MODERN SPECIES	47	ENSODEG00000008891	ENSODEG00000008409 ##21	GBA3 (ENSODEG00000007983)	ADGRA3 (ENSODEG00000008912)	KCNIP4 (ENSODEG00000009132)	ENSODEG00000009142	SLIT2 (ENSODEG00000011554)	ENSODEG00000007550	ENSODEG00000007625	NCAPG (ENSODEG00000007988)	FAM184B (ENSODEG00000008017)	MED28 (ENSODEG00000010235)	ENSODEG00000008724	CLRN2 (ENSODEG00000009531)	QDPR (ENSODEG00000009810)	LDB2 (ENSODEG00000010335) ##22	TAPT1 (ENSODEG00000007601)	PROM1 (ENSODEG00000011756)	CD38 (ENSODEG00000008127)	BST1 (ENSODEG00000008525)	FBXL5 (ENSODEG00000009798)	CC2D2A (ENSODEG00000008363)	ENSODEG00000007912	C1QTNF7 (ENSODEG00000008202)	ENSODEG00000009313	ENSODEG00000019491	BOD1L1 (ENSODEG00000009613)	NKX3-2 (ENSODEG00000010309)	ENSODEG00000008482	HS3ST1 (ENSODEG00000019871)	WDR1 (ENSODEG00000008420)
Rodentia_B	ANCESTRAL SPECIES	19	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00960000191062	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846
Kangaroo rat	MODERN SPECIES	327	Dhx15 (ENSDORG00000013848)	Ppargc1a (ENSDORG00000016276) ##21	ENSDORG00000011391	Adgra3 (ENSDORG00000007520)	ENSDORG00000024508	Kcnip4 (ENSDORG00000015626)	5730480H06Rik (ENSDORG00000015625)	Slit2 (ENSDORG00000000584)	ENSDORG00000025331	Ncapg (ENSDORG00000013096)	ENSDORG00000028180	ENSDORG00000029831	Lap3 (ENSDORG00000008040)	Clrn2 (ENSDORG00000008037)	Qdpr (ENSDORG00000008034)	Ldb2 (ENSDORG00000010160) ##22	Tapt1 (ENSDORG00000010543)	Prom1 (ENSDORG00000003837)	Fgfbp1 (ENSDORG00000003836)	Cd38 (ENSDORG00000028784)	Bst1 (ENSDORG00000008242)	Fbxl5 (ENSDORG00000015817)	Cc2d2a (ENSDORG00000010993)	C1qtnf7 (ENSDORG00000024922)	ENSDORG00000015311	Bod1l (ENSDORG00000023839)	Nkx3-2 (ENSDORG00000011852)	Rab28 (ENSDORG00000012378)	Hs3st1 (ENSDORG00000027627)	ENSDORG00000028672	Zfp518b (ENSDORG00000027616)
Myomorpha	ANCESTRAL SPECIES	19	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00960000191062	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846
Lesser Egyptian jerboa	MODERN SPECIES	58	ENSJJAG00000023479	Adgra3 (ENSJJAG00000000786)	Kcnip4 (ENSJJAG00000016294)	ENSJJAG00000008981	ENSJJAG00000020450	Slit2 (ENSJJAG00000018613)	ENSJJAG00000017549	ENSJJAG00000017097	ENSJJAG00000020247	Ncapg (ENSJJAG00000023233)	Fam184b (ENSJJAG00000014582)	ENSJJAG00000022052	Lap3 (ENSJJAG00000016507)	Clrn2 (ENSJJAG00000010634)	Qdpr (ENSJJAG00000019964)	Ldb2 (ENSJJAG00000014327) ##22	ENSJJAG00000017776	Tapt1 (ENSJJAG00000015027)	Prom1 (ENSJJAG00000015809)	Cd38 (ENSJJAG00000011604)	Bst1 (ENSJJAG00000016828)	Fbxl5 (ENSJJAG00000003494)	Cc2d2a (ENSJJAG00000013328)	C1qtnf7 (ENSJJAG00000009907)	ENSJJAG00000013747	ENSJJAG00000018431	ENSJJAG00000016939	ENSJJAG00000012742	ENSJJAG00000018843	Bod1l (ENSJJAG00000012901)	ENSJJAG00000022446
Muroidea	ANCESTRAL SPECIES	17	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00960000191062	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846
Upper Galilee mountains blind mole rat	MODERN SPECIES	529									ENSNGAG00000013120	Ncapg (ENSNGAG00000015665)	Fam184b (ENSNGAG00000000450)	ENSNGAG00000013542	Lap3 (ENSNGAG00000015790)	Clrn2 (ENSNGAG00000016449)	Qdpr (ENSNGAG00000017620)	Ldb2 (ENSNGAG00000020132) ##22	Tapt1 (ENSNGAG00000004565)	Prom1 (ENSNGAG00000018206)	Fgfbp1 (ENSNGAG00000017313)	Cd38 (ENSNGAG00000017880)	ENSNGAG00000019781	ENSNGAG00000020377	Cc2d2a (ENSNGAG00000005275)	C1qtnf7 (ENSNGAG00000021499)	ENSNGAG00000010275	ENSNGAG00000014506	Nkx3-2 (ENSNGAG00000015309)	ENSNGAG00000017509	Hs3st1 (ENSNGAG00000019119)	ENSNGAG00000019918
Muroidea_A	ANCESTRAL SPECIES	13	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00960000191062	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846
Cricetidae	ANCESTRAL SPECIES	14	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00960000191062	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846
Cricetidae_B	ANCESTRAL SPECIES	9	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b
Northern American deer mouse	MODERN SPECIES	1	Dhx15 (ENSPEMG00000012226)	Ppargc1a (ENSPEMG00000010892) ##21	ENSPEMG00000009892	Adgra3 (ENSPEMG00000017979)	ENSPEMG00000025724	Kcnip4 (ENSPEMG00000000713)	5730480H06Rik (ENSPEMG00000015581)	Slit2 (ENSPEMG00000001202)	ENSPEMG00000021270	Ncapg (ENSPEMG00000020612)	Fam184b (ENSPEMG00000021704)	ENSPEMG00000030352	Lap3 (ENSPEMG00000020769)	Clrn2 (ENSPEMG00000020731)	Qdpr (ENSPEMG00000020868)	Ldb2 (ENSPEMG00000020695) ##22	ENSPEMG00000001976	Tapt1 (ENSPEMG00000020536)	ENSPEMG00000002984	Prom1 (ENSPEMG00000028234)	Fgfbp1 (ENSPEMG00000020951)	Cd38 (ENSPEMG00000023560)	Bst1 (ENSPEMG00000023629)	Fbxl5 (ENSPEMG00000012993)	Cc2d2a (ENSPEMG00000009644)	C1qtnf7 (ENSPEMG00000007887)	Cpeb2 (ENSPEMG00000024159)	ENSPEMG00000026956	Bod1l (ENSPEMG00000020794)	Nkx3-2 (ENSPEMG00000022326)	Rab28 (ENSPEMG00000023863)
Prairie vole	MODERN SPECIES	88	Ppargc1a (ENSMOCG00000008765) ##21	ENSMOCG00000016793	Adgra3 (ENSMOCG00000015234)	Kcnip4 (ENSMOCG00000010621)	5730480H06Rik (ENSMOCG00000020867)	Slit2 (ENSMOCG00000012614)	ENSMOCG00000020963	ENSMOCG00000004853	ENSMOCG00000006778	Ncapg (ENSMOCG00000016519)	Fam184b (ENSMOCG00000006017)	Med28 (ENSMOCG00000021857)	Lap3 (ENSMOCG00000018206)	Clrn2 (ENSMOCG00000000341)	Qdpr (ENSMOCG00000020517)	Ldb2 (ENSMOCG00000000590) ##22	ENSMOCG00000006770	ENSMOCG00000007403	Tapt1 (ENSMOCG00000018152)	Prom1 (ENSMOCG00000011011)	Fgfbp1 (ENSMOCG00000003612)	Cd38 (ENSMOCG00000014535)	Bst1 (ENSMOCG00000019455)	Fbxl5 (ENSMOCG00000000364)	Cc2d2a (ENSMOCG00000007257)	C1qtnf7 (ENSMOCG00000016175)	Cpeb2 (ENSMOCG00000004212)	Bod1l (ENSMOCG00000000791)	Nkx3-2 (ENSMOCG00000012601)	Rab28 (ENSMOCG00000022207)	Hs3st1 (ENSMOCG00000015807)
Cricetinae	ANCESTRAL SPECIES	9	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00960000191062	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846
Golden Hamster	MODERN SPECIES	632	Dhx15 (ENSMAUG00000011535)	Ppargc1a (ENSMAUG00000011811) ##21	ENSMAUG00000006861	ENSMAUG00000007935	Adgra3 (ENSMAUG00000012066)	ENSMAUG00000007284	Kcnip4 (ENSMAUG00000020538)	5730480H06Rik (ENSMAUG00000000592)	Slit2 (ENSMAUG00000011068)	ENSMAUG00000019848	Ncapg (ENSMAUG00000007532)	Fam184b (ENSMAUG00000021123)	ENSMAUG00000008581	Lap3 (ENSMAUG00000014239)	ENSMAUG00000013013	Ldb2 (ENSMAUG00000019898) ##22	Tapt1 (ENSMAUG00000020047)	Prom1 (ENSMAUG00000021517)	ENSMAUG00000008674	Fgfbp1 (ENSMAUG00000021288)	Cd38 (ENSMAUG00000010213)	Bst1 (ENSMAUG00000009435)	Fbxl5 (ENSMAUG00000021433)	Cc2d2a (ENSMAUG00000009103)	C1qtnf7 (ENSMAUG00000014427)	Cpeb2 (ENSMAUG00000012556)	Bod1l (ENSMAUG00000005686)	Nkx3-2 (ENSMAUG00000021195)	Rab28 (ENSMAUG00000008404)	Hs3st1 (ENSMAUG00000010930)	Clnk (ENSMAUG00000011387)
Chinese hamster chok1gshd	MODERN SPECIES	44	Adgra3 (ENSCGRG00001023189)	Kcnip4 (ENSCGRG00001018947)	5730480H06Rik (ENSCGRG00001006394)	Slit2 (ENSCGRG00001021922)	ENSCGRG00001020697	ENSCGRG00001020289	ENSCGRG00001011448	ENSCGRG00001007598	Ncapg (ENSCGRG00001013905)	Fam184b (ENSCGRG00001011119)	ENSCGRG00001021780	Lap3 (ENSCGRG00001017729)	Clrn2 (ENSCGRG00001000075)	Qdpr (ENSCGRG00001012378)	ENSCGRG00001023709	Ldb2 (ENSCGRG00001021127) ##22	ENSCGRG00001017411	Tapt1 (ENSCGRG00001012440)	ENSCGRG00001007353	Prom1 (ENSCGRG00001016969)	Fgfbp1 (ENSCGRG00001010728)	Cd38 (ENSCGRG00001002421)	Bst1 (ENSCGRG00001017887)	Fbxl5 (ENSCGRG00001012142)	Cc2d2a (ENSCGRG00001024057)	C1qtnf7 (ENSCGRG00001018371)	Cpeb2 (ENSCGRG00001011001)	ENSCGRG00001022278	Bod1l (ENSCGRG00001016786)	Nkx3-2 (ENSCGRG00001003722)	ENSCGRG00001022149
Murinae	ANCESTRAL SPECIES	12	ENSGT01100000263511.b.a.b.a.a	ENSGT01100000263543.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b
Rat	MODERN SPECIES	5	Gba3 (ENSRNOG00000024634)	Adgra3 (ENSRNOG00000004279)	Ifitm3-ps1 (ENSRNOG00000048944)	Kcnip4 (ENSRNOG00000032350)	Pacrgl (ENSRNOG00000004140)	Slit2 (ENSRNOG00000003840)	ENSRNOG00000068270	Lcorl (ENSRNOG00000003787)	Ncapg (ENSRNOG00000038572)	Fam184b (ENSRNOG00000003704)	Med28 (ENSRNOG00000003592)	Lap3 (ENSRNOG00000003289)	Clrn2 (ENSRNOG00000027195)	Qdpr (ENSRNOG00000003253)	ENSRNOG00000069412	Ldb2 (ENSRNOG00000003205) ##22	Tapt1 (ENSRNOG00000003174)	Prom1 (ENSRNOG00000003098)	Fgfbp1 (ENSRNOG00000003095)	Apex2l1 (ENSRNOG00000026046)	Cd38 (ENSRNOG00000003069)	Bst1 (ENSRNOG00000003064)	Fbxl5 (ENSRNOG00000005261)	Cc2d2a (ENSRNOG00000059715)	C1qtnf7 (ENSRNOG00000005094)	Isca2-ps1 (ENSRNOG00000005077)	Cpeb2 (ENSRNOG00000005043)	Rab5al1 (ENSRNOG00000062595)	Rps11-ps1 (ENSRNOG00000064268)	RGD1561694 (ENSRNOG00000029107)	Bod1l1 (ENSRNOG00000050437)
Mus	ANCESTRAL SPECIES	14	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a ##21	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b
Mus_A	ANCESTRAL SPECIES	6	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a ##21	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b
Mus_B	ANCESTRAL SPECIES	4	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a ##21	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b
Mouse	MODERN SPECIES	14	Ccdc149 (ENSMUSG00000045790)	Sod3 (ENSMUSG00000072941)	Dhx15 (ENSMUSG00000029169)	Ppargc1a (ENSMUSG00000029167) ##21	Adgra3 (ENSMUSG00000029090)	Kcnip4 (ENSMUSG00000029088)	5730480H06Rik (ENSMUSG00000029089)	Slit2 (ENSMUSG00000031558)	Lcorl (ENSMUSG00000015882)	Ncapg (ENSMUSG00000015880)	Fam184b (ENSMUSG00000015879)	Med28 (ENSMUSG00000015804)	Lap3 (ENSMUSG00000039682)	Clrn2 (ENSMUSG00000049530)	Qdpr (ENSMUSG00000015806)	Ldb2 (ENSMUSG00000039706) ##22	Tapt1 (ENSMUSG00000046985)	Prom1 (ENSMUSG00000029086)	Fgfbp1 (ENSMUSG00000048373)	Ppihl (ENSMUSG00000033036)	Cd38 (ENSMUSG00000029084)	Bst1 (ENSMUSG00000029082)	Fbxl5 (ENSMUSG00000039753)	Cc2d2a (ENSMUSG00000039765)	C1qtnf7 (ENSMUSG00000061535)	Cpeb2 (ENSMUSG00000039782)	Bod1l (ENSMUSG00000061755)	Nkx3-2 (ENSMUSG00000049691)	Rab28 (ENSMUSG00000029128)	Hs3st1 (ENSMUSG00000051022)	Clnk (ENSMUSG00000039315)
Mus_C	ANCESTRAL SPECIES	4	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a ##21	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b
spretus	MODERN SPECIES	14	Ccdc149 (MGP_SPRETEiJ_G0028211)	Sod3 (MGP_SPRETEiJ_G0028210)	Dhx15 (MGP_SPRETEiJ_G0028209)	Ppargc1a (MGP_SPRETEiJ_G0028208) ##21	Adgra3 (MGP_SPRETEiJ_G0028207)	Kcnip4 (MGP_SPRETEiJ_G0028206)	5730480H06Rik (MGP_SPRETEiJ_G0028205)	Slit2 (MGP_SPRETEiJ_G0028204)	MGP_SPRETEiJ_G0028203	Ncapg (MGP_SPRETEiJ_G0028202)	Fam184b (MGP_SPRETEiJ_G0028201)	Med28 (MGP_SPRETEiJ_G0028200)	Lap3 (MGP_SPRETEiJ_G0028199)	Clrn2 (MGP_SPRETEiJ_G0028198)	Qdpr (MGP_SPRETEiJ_G0028197)	Ldb2 (MGP_SPRETEiJ_G0028196) ##22	Tapt1 (MGP_SPRETEiJ_G0028195)	Prom1 (MGP_SPRETEiJ_G0028194)	Fgfbp1 (MGP_SPRETEiJ_G0028193)	Cd38 (MGP_SPRETEiJ_G0028192)	Bst1 (MGP_SPRETEiJ_G0028191)	Fbxl5 (MGP_SPRETEiJ_G0028190)	Cc2d2a (MGP_SPRETEiJ_G0028189)	C1qtnf7 (MGP_SPRETEiJ_G0028188)	Cpeb2 (MGP_SPRETEiJ_G0028187)	MGP_SPRETEiJ_G0028186	Bod1l (MGP_SPRETEiJ_G0028185)	Nkx3-2 (MGP_SPRETEiJ_G0028184)	Rab28 (MGP_SPRETEiJ_G0028183)	Hs3st1 (MGP_SPRETEiJ_G0028182)	Clnk (MGP_SPRETEiJ_G0028181)
Steppe mouse	MODERN SPECIES	3419									Lcorl (ENSMSIG00000029653)	Ncapg (ENSMSIG00000029676)	Fam184b (ENSMSIG00000029687)	Med28 (ENSMSIG00000029693)	Lap3 (ENSMSIG00000029697)	Clrn2 (ENSMSIG00000029703)	Qdpr (ENSMSIG00000029706)	Ldb2 (ENSMSIG00000029731) ##22	ENSMSIG00000029753	Tapt1 (ENSMSIG00000029756)	Prom1 (ENSMSIG00000029762)	Fgfbp1 (ENSMSIG00000030095)	Cd38 (ENSMSIG00000030098)	Bst1 (ENSMSIG00000030100)	Fbxl5 (ENSMSIG00000030102)	Cc2d2a (ENSMSIG00000030112)	C1qtnf7 (ENSMSIG00000030162)	Cpeb2 (ENSMSIG00000030167)	Bod1l (ENSMSIG00000030207)	Nkx3-2 (ENSMSIG00000030244)	Rab28 (ENSMSIG00000030249)	ENSMSIG00000030260 ##36
Ryukyu mouse	MODERN SPECIES	14	Sod3 (MGP_CAROLIEiJ_G0027215)	Dhx15 (MGP_CAROLIEiJ_G0027214)	Ppargc1a (MGP_CAROLIEiJ_G0027213) ##21	Adgra3 (MGP_CAROLIEiJ_G0027212)	MGP_CAROLIEiJ_G0027211	Kcnip4 (MGP_CAROLIEiJ_G0027210)	5730480H06Rik (MGP_CAROLIEiJ_G0027209)	Slit2 (MGP_CAROLIEiJ_G0027208)	MGP_CAROLIEiJ_G0027207	Ncapg (MGP_CAROLIEiJ_G0027206)	Fam184b (MGP_CAROLIEiJ_G0027205)	Med28 (MGP_CAROLIEiJ_G0027204)	Lap3 (MGP_CAROLIEiJ_G0027203)	Clrn2 (MGP_CAROLIEiJ_G0027202)	Qdpr (MGP_CAROLIEiJ_G0027201)	Ldb2 (MGP_CAROLIEiJ_G0027200) ##22	Tapt1 (MGP_CAROLIEiJ_G0027199)	Prom1 (MGP_CAROLIEiJ_G0027198)	Fgfbp1 (MGP_CAROLIEiJ_G0027197)	Cd38 (MGP_CAROLIEiJ_G0027196)	Bst1 (MGP_CAROLIEiJ_G0027195)	Fbxl5 (MGP_CAROLIEiJ_G0027194)	Cc2d2a (MGP_CAROLIEiJ_G0027193)	C1qtnf7 (MGP_CAROLIEiJ_G0027192)	Cpeb2 (MGP_CAROLIEiJ_G0027191)	MGP_CAROLIEiJ_G0027190	MGP_CAROLIEiJ_G0027189	Bod1l (MGP_CAROLIEiJ_G0027188)	Nkx3-2 (MGP_CAROLIEiJ_G0027187)	Rab28 (MGP_CAROLIEiJ_G0027186)	Hs3st1 (MGP_CAROLIEiJ_G0027185)
Shrew mouse	MODERN SPECIES	4	Sod3 (MGP_PahariEiJ_G0016997)	Dhx15 (MGP_PahariEiJ_G0016996)	Ppargc1a (MGP_PahariEiJ_G0016995) ##21	Adgra3 (MGP_PahariEiJ_G0016994)	MGP_PahariEiJ_G0016993	Kcnip4 (MGP_PahariEiJ_G0016992)	5730480H06Rik (MGP_PahariEiJ_G0016991)	Slit2 (MGP_PahariEiJ_G0016990)	MGP_PahariEiJ_G0016989	Ncapg (MGP_PahariEiJ_G0016988)	Fam184b (MGP_PahariEiJ_G0016987)	Med28 (MGP_PahariEiJ_G0016986)	Lap3 (MGP_PahariEiJ_G0016985)	Clrn2 (MGP_PahariEiJ_G0016984)	Qdpr (MGP_PahariEiJ_G0016983)	Ldb2 (MGP_PahariEiJ_G0016982) ##22	Tapt1 (MGP_PahariEiJ_G0016981)	Prom1 (MGP_PahariEiJ_G0016980)	Fgfbp1 (MGP_PahariEiJ_G0016979)	Cd38 (MGP_PahariEiJ_G0016978)	Bst1 (MGP_PahariEiJ_G0016977)	Fbxl5 (MGP_PahariEiJ_G0016976)	Cc2d2a (MGP_PahariEiJ_G0016975)	C1qtnf7 (MGP_PahariEiJ_G0016974)	Cpeb2 (MGP_PahariEiJ_G0016973)	Bod1l (MGP_PahariEiJ_G0016972)	Nkx3-2 (MGP_PahariEiJ_G0016971)	Rab28 (MGP_PahariEiJ_G0016970)	Hs3st1 (MGP_PahariEiJ_G0016969)	Clnk (MGP_PahariEiJ_G0016968)	Zfp518b (MGP_PahariEiJ_G0016967)
Primates	ANCESTRAL SPECIES	10	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000165139.b	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00990000204159	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00960000191062	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833
Strepsirrhini	ANCESTRAL SPECIES	46	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00960000191062	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833
Lemuriformes	ANCESTRAL SPECIES	62	ENSGT00900000143693	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00960000191062	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833
Lemuriformes_a	ANCESTRAL SPECIES	177									ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00960000191062	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833
Coquerels sifaka	MODERN SPECIES	139									LCORL (ENSPCOG00000024078)	NCAPG (ENSPCOG00000005962)	FAM184B (ENSPCOG00000028112)	MED28 (ENSPCOG00000017427)	LAP3 (ENSPCOG00000022123)	CLRN2 (ENSPCOG00000028465)	QDPR (ENSPCOG00000028834)	LDB2 (ENSPCOG00000018041) ##22	ENSPCOG00000004435	TAPT1 (ENSPCOG00000000725)	PROM1 (ENSPCOG00000018268)	CD38 (ENSPCOG00000012225)	BST1 (ENSPCOG00000021913)	FBXL5 (ENSPCOG00000015397)	CC2D2A (ENSPCOG00000027889)	C1QTNF7 (ENSPCOG00000028186)	CPEB2 (ENSPCOG00000027324)	ENSPCOG00000026440	BOD1L1 (ENSPCOG00000028312)	NKX3-2 (ENSPCOG00000024252)	RAB28 (ENSPCOG00000015364)	VCAN (ENSPCOG00000028583)	HAPLN1 (ENSPCOG00000023033)
Greater bamboo lemur	MODERN SPECIES	730																LDB2 (ENSPSMG00000006561) ##22	ENSPSMG00000006500	TAPT1 (ENSPSMG00000006494)	PROM1 (ENSPSMG00000006266)	FGFBP2 (ENSPSMG00000006174)	FGFBP1 (ENSPSMG00000006171)	CD38 (ENSPSMG00000006168)	BST1 (ENSPSMG00000006158)	FAM200B (ENSPSMG00000006156)	FBXL5 (ENSPSMG00000006122)	CC2D2A (ENSPSMG00000006065)	C1QTNF7 (ENSPSMG00000006021)	CPEB2 (ENSPSMG00000005869)	BOD1L1 (ENSPSMG00000005775)	NKX3-2 (ENSPSMG00000005768)	RAB28 (ENSPSMG00000005666)
Mouse lemur	MODERN SPECIES	26	ADGRA3 (ENSMICG00000003022)	ENSMICG00000009425	KCNIP4 (ENSMICG00000035356)	PACRGL (ENSMICG00000005651)	SLIT2 (ENSMICG00000005622)	ENSMICG00000027479	LCORL (ENSMICG00000034656)	NCAPG (ENSMICG00000006804)	DCAF16 (ENSMICG00000042496)	FAM184B (ENSMICG00000006794)	MED28 (ENSMICG00000035340)	ENSMICG00000006788	CLRN2 (ENSMICG00000039157)	QDPR (ENSMICG00000000596)	ENSMICG00000032094	LDB2 (ENSMICG00000000598) ##22	TAPT1 (ENSMICG00000016984)	PROM1 (ENSMICG00000016967)	CD38 (ENSMICG00000030541)	ENSMICG00000036816	BST1 (ENSMICG00000016939)	FAM200B (ENSMICG00000033275)	FBXL5 (ENSMICG00000016925)	CC2D2A (ENSMICG00000016896)	C1QTNF7 (ENSMICG00000016892)	CPEB2 (ENSMICG00000032133)	ENSMICG00000035998	BOD1L1 (ENSMICG00000031531)	NKX3-2 (ENSMICG00000047225)	RAB28 (ENSMICG00000030335)	ENSMICG00000029248
Bushbaby	MODERN SPECIES	184	PPARGC1A (ENSOGAG00000014559) ##21	GBA3 (ENSOGAG00000004907)	ENSOGAG00000034271	ADGRA3 (ENSOGAG00000012841)	KCNIP4 (ENSOGAG00000012838)	PACRGL (ENSOGAG00000012836)	SLIT2 (ENSOGAG00000012831)	ENSOGAG00000005593	ENSOGAG00000005585	FAM184B (ENSOGAG00000005580)	MED28 (ENSOGAG00000033835)	LAP3 (ENSOGAG00000005576)	CLRN2 (ENSOGAG00000029063)	QDPR (ENSOGAG00000013513)	ENSOGAG00000030115	LDB2 (ENSOGAG00000002455) ##22	TAPT1 (ENSOGAG00000007507)	PROM1 (ENSOGAG00000014130)	FGFBP2 (ENSOGAG00000002550)	ENSOGAG00000032311
Haplorrhini	ANCESTRAL SPECIES	23	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000165139.b	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00990000204159	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449
Tarsier	MODERN SPECIES	4128																LDB2 (ENSTSYG00000006492) ##22
Simiiformes	ANCESTRAL SPECIES	10	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000165139.b	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430	ENSGT01100000263819	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449
Platyrrhini	ANCESTRAL SPECIES	5	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985.c	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT01100000263819	ENSGT00390000012430.c	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846
Cebidae	ANCESTRAL SPECIES	4	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985.c	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430.c	ENSGT01100000263819	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846
Cebidae_a	ANCESTRAL SPECIES	34	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985.c	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430.c	ENSGT01100000263819	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000159563.n	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b
Capuchin	MODERN SPECIES	127			KCNIP4 (ENSCCAG00000018484)	PACRGL (ENSCCAG00000025385)	SLIT2 (ENSCCAG00000032277)	ENSCCAG00000022368	LCORL (ENSCCAG00000033762)	NCAPG (ENSCCAG00000034453)	DCAF16 (ENSCCAG00000017582)	ENSCCAG00000015170	FAM184B (ENSCCAG00000024108)	MED28 (ENSCCAG00000000877)	LAP3 (ENSCCAG00000027426)	CLRN2 (ENSCCAG00000035095)	QDPR (ENSCCAG00000024350)	LDB2 (ENSCCAG00000032345) ##22
Bolivian squirrel monkey	MODERN SPECIES	65	ENSSBOG00000032262	ENSSBOG00000023241	KCNIP4 (ENSSBOG00000034826)	PACRGL (ENSSBOG00000024032)	SLIT2 (ENSSBOG00000017816)	ENSSBOG00000030307	LCORL (ENSSBOG00000026920)	NCAPG (ENSSBOG00000022967)	ENSSBOG00000009348	DCAF16 (ENSSBOG00000013262)	FAM184B (ENSSBOG00000030079)	MED28 (ENSSBOG00000023401)	ENSSBOG00000001223	CLRN2 (ENSSBOG00000019889)	QDPR (ENSSBOG00000032183)	LDB2 (ENSSBOG00000029579) ##22	TAPT1 (ENSSBOG00000021586)	ENSSBOG00000028659	PROM1 (ENSSBOG00000031657)	CD38 (ENSSBOG00000030211)	BST1 (ENSSBOG00000032028)	FBXL5 (ENSSBOG00000031508)	ENSSBOG00000020849 ##10	CC2D2A (ENSSBOG00000024437)	C1QTNF7 (ENSSBOG00000032334)	CPEB2 (ENSSBOG00000023921)	ENSSBOG00000019400	ENSSBOG00000021212	ENSSBOG00000033748	ENSSBOG00000023871	ENSSBOG00000022694
Marmoset	MODERN SPECIES	15	SLIT2 (ENSCJAG00000012812)	ENSCJAG00000079404	ENSCJAG00000054556	ENSCJAG00000071321	ENSCJAG00000079516	ENSCJAG00000086132	LCORL (ENSCJAG00000012800)	NCAPG (ENSCJAG00000012738)	DCAF16 (ENSCJAG00000042155)	FAM184B (ENSCJAG00000012722)	MED28 (ENSCJAG00000064919)	LAP3 (ENSCJAG00000012680)	CLRN2 (ENSCJAG00000012671)	QDPR (ENSCJAG00000012653)	ENSCJAG00000007747	LDB2 (ENSCJAG00000012590) ##22	TAPT1 (ENSCJAG00000012541)	PROM1 (ENSCJAG00000012523)	FGFBP2 (ENSCJAG00000072152)	FGFBP1 (ENSCJAG00000012518)	ENSCJAG00000075835	CD38 (ENSCJAG00000012505)	FAM200B (ENSCJAG00000048330)	FBXL5 (ENSCJAG00000012393)	CC2D2A (ENSCJAG00000012270)	ENSCJAG00000071775	ENSCJAG00000085443	C1QTNF7 (ENSCJAG00000080023)	CPEB2 (ENSCJAG00000038767)	ENSCJAG00000076959	ENSCJAG00000074465
Mas night monkey	MODERN SPECIES	1274	ADGRA3 (ENSANAG00000029226)	KCNIP4 (ENSANAG00000020849)	PACRGL (ENSANAG00000026655)	SLIT2 (ENSANAG00000034275)	ENSANAG00000036506	LCORL (ENSANAG00000026998)	NCAPG (ENSANAG00000037426)	ENSANAG00000004148	DCAF16 (ENSANAG00000003812)	FAM184B (ENSANAG00000030525)	ENSANAG00000018015	LAP3 (ENSANAG00000026474)	CLRN2 (ENSANAG00000037120)	ENSANAG00000022597	ENSANAG00000034031	LDB2 (ENSANAG00000025667) ##22	TAPT1 (ENSANAG00000027859)	ENSANAG00000020865	PROM1 (ENSANAG00000030303)	CD38 (ENSANAG00000034274)	BST1 (ENSANAG00000030103)	FBXL5 (ENSANAG00000014120)	CC2D2A (ENSANAG00000038273)	C1QTNF7 (ENSANAG00000036459)	CPEB2 (ENSANAG00000004909)
Catarrhini	ANCESTRAL SPECIES	14	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000165139.b	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430	ENSGT01100000263819	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B.k	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00950000183208.A.c.a.f	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833
Hominoidea	ANCESTRAL SPECIES	10	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT01100000263819	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B.k	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00950000183208.A.c.a.f	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833
Hominidae	ANCESTRAL SPECIES	12	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT01100000263819	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B.k	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT01020000230401.a.a.a.i.a.b
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	11	ENSGT00950000182891.a.a.b.a.b.a.s.c.a	ENSGT00940000157235	ENSGT00940000158985.b	ENSGT00940000159756	ENSGT00940000158402	ENSGT01030000234946.d.a.b.b	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT01100000263819	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B.k	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00950000183208.A.c.a.f	ENSGT00900000143214	ENSGT00390000017515.o.b	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a
Homo/Pan group	ANCESTRAL SPECIES	10	ENSGT00950000182891.a.a.b.a.b.a.s.c.a	ENSGT00940000157235	ENSGT00940000158985.b	ENSGT00940000159756	ENSGT00940000158402	ENSGT01030000234946.d.a.b.b	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT01100000263819	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B.k	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00950000183208.A.c.a.f	ENSGT00900000143214	ENSGT00390000017515.o.b	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a
Pan	ANCESTRAL SPECIES	7	ENSGT00950000182891.a.a.b.a.b.a.s.c.a	ENSGT00940000157235	ENSGT00940000158985.b	ENSGT00940000159756	ENSGT00940000158402	ENSGT01030000234946.d.a.b.b	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT01100000263819	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B.k	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00950000183208.A.c.a.f	ENSGT00900000143214	ENSGT00390000017515.o.b	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a
Chimpanzee	MODERN SPECIES	17	KCNIP4 (ENSPTRG00000015948)	PACRGL (ENSPTRG00000015945)	SLIT2 (ENSPTRG00000024331)	ENSPTRG00000050513	LCORL (ENSPTRG00000052306)	NCAPG (ENSPTRG00000015942)	ENSPTRG00000045108	DCAF16 (ENSPTRG00000051571)	FAM184B (ENSPTRG00000015940)	MED28 (ENSPTRG00000045116)	LAP3 (ENSPTRG00000015938)	CLRN2 (ENSPTRG00000050671)	QDPR (ENSPTRG00000015936)	ENSPTRG00000009418	ENSPTRG00000039221	LDB2 (ENSPTRG00000015935) ##22	ENSPTRG00000049469	ENSPTRG00000045915	ENSPTRG00000049952	TAPT1 (ENSPTRG00000015933)	PROM1 (ENSPTRG00000015932)	FGFBP2 (ENSPTRG00000031250)	FGFBP1 (ENSPTRG00000015931)	CD38 (ENSPTRG00000015930)	BST1 (ENSPTRG00000015929)	FAM200B (ENSPTRG00000044690)	FBXL5 (ENSPTRG00000015927)	CC2D2A (ENSPTRG00000015926)	C1QTNF7 (ENSPTRG00000015925)	CPEB2 (ENSPTRG00000015924)	BOD1L1 (ENSPTRG00000015922)
Bonobo	MODERN SPECIES	17	GBA3 (ENSPPAG00000040905)	ENSPPAG00000011801	ADGRA3 (ENSPPAG00000035849)	KCNIP4 (ENSPPAG00000033844)	PACRGL (ENSPPAG00000027879)	SLIT2 (ENSPPAG00000043820)	LCORL (ENSPPAG00000039308)	NCAPG (ENSPPAG00000028077)	ENSPPAG00000023045	DCAF16 (ENSPPAG00000021334)	FAM184B (ENSPPAG00000038055)	MED28 (ENSPPAG00000034569)	LAP3 (ENSPPAG00000029619)	CLRN2 (ENSPPAG00000027659)	QDPR (ENSPPAG00000036323)	LDB2 (ENSPPAG00000033538) ##22	ENSPPAG00000033372	ENSPPAG00000033323	TAPT1 (ENSPPAG00000027508)	PROM1 (ENSPPAG00000032761)	FGFBP2 (ENSPPAG00000012344)	FGFBP1 (ENSPPAG00000023092)	ENSPPAG00000035131	CD38 (ENSPPAG00000036378)	BST1 (ENSPPAG00000034960)	FAM200B (ENSPPAG00000012482)	FBXL5 (ENSPPAG00000007317)	CC2D2A (ENSPPAG00000039745)	C1QTNF7 (ENSPPAG00000000881)	ENSPPAG00000009844	BOD1L1 (ENSPPAG00000014926)
Human	MODERN SPECIES	16	DHX15 (ENSG00000109606)	PPARGC1A (ENSG00000109819) ##21	GBA3 (ENSG00000249948)	ADGRA3 (ENSG00000152990)	KCNIP4 (ENSG00000185774)	PACRGL (ENSG00000163138)	SLIT2 (ENSG00000145147)	LCORL (ENSG00000178177)	NCAPG (ENSG00000109805)	DCAF16 (ENSG00000163257)	FAM184B (ENSG00000047662)	MED28 (ENSG00000118579)	LAP3 (ENSG00000002549)	CLRN2 (ENSG00000249581)	QDPR (ENSG00000151552)	LDB2 (ENSG00000169744) ##22	TAPT1 (ENSG00000169762)	PROM1 (ENSG00000007062)	FGFBP2 (ENSG00000137441)	FGFBP1 (ENSG00000137440)	CD38 (ENSG00000004468)	BST1 (ENSG00000109743)	FAM200B (ENSG00000237765)	FBXL5 (ENSG00000118564)	CC2D2A (ENSG00000048342)	C1QTNF7 (ENSG00000163145)	CPEB2 (ENSG00000137449)	BOD1L1 (ENSG00000038219)	NKX3-2 (ENSG00000109705)	RAB28 (ENSG00000157869)	HS3ST1 (ENSG00000002587)
Gorilla	MODERN SPECIES	17	GBA3 (ENSGGOG00000013597)	ENSGGOG00000026378	ADGRA3 (ENSGGOG00000026666)	ENSGGOG00000038375	PACRGL (ENSGGOG00000012603)	SLIT2 (ENSGGOG00000006151)	ENSGGOG00000037439	LCORL (ENSGGOG00000014894)	NCAPG (ENSGGOG00000015019)	ENSGGOG00000038365	FAM184B (ENSGGOG00000007263)	MED28 (ENSGGOG00000001114)	LAP3 (ENSGGOG00000001110)	CLRN2 (ENSGGOG00000004114)	QDPR (ENSGGOG00000004110)	LDB2 (ENSGGOG00000000354) ##22	ENSGGOG00000039877	ENSGGOG00000039503	TAPT1 (ENSGGOG00000011812)	PROM1 (ENSGGOG00000016139)	FGFBP2 (ENSGGOG00000028579)	FGFBP1 (ENSGGOG00000016135)	CD38 (ENSGGOG00000006165)	BST1 (ENSGGOG00000008845)	FAM200B (ENSGGOG00000027844)	FBXL5 (ENSGGOG00000010962)	CC2D2A (ENSGGOG00000002758)	C1QTNF7 (ENSGGOG00000005890)	CPEB2 (ENSGGOG00000004449)	BOD1L1 (ENSGGOG00000027616)	NKX3-2 (ENSGGOG00000008589)
Orangutan	MODERN SPECIES	17	PPARGC1A (ENSPPYG00000014640) ##21	GBA3 (ENSPPYG00000014639)	ENSPPYG00000014638	ADGRA3 (ENSPPYG00000014637)	KCNIP4 (ENSPPYG00000030455)	PACRGL (ENSPPYG00000014634)	SLIT2 (ENSPPYG00000014633)	ENSPPYG00000036110	LCORL (ENSPPYG00000014631)	NCAPG (ENSPPYG00000014630)	FAM184B (ENSPPYG00000014628)	MED28 (ENSPPYG00000014627)	LAP3 (ENSPPYG00000014626)	CLRN2 (ENSPPYG00000014625)	QDPR (ENSPPYG00000014624)	LDB2 (ENSPPYG00000014623) ##22	TAPT1 (ENSPPYG00000014621)	PROM1 (ENSPPYG00000014620)	FGFBP1 (ENSPPYG00000015290)	CD38 (ENSPPYG00000014618)	BST1 (ENSPPYG00000014617)	FAM200B (ENSPPYG00000033516)	FBXL5 (ENSPPYG00000014616)	CC2D2A (ENSPPYG00000014615)	C1QTNF7 (ENSPPYG00000036843)	CPEB2 (ENSPPYG00000014613)	BOD1L1 (ENSPPYG00000014612)	NKX3-2 (ENSPPYG00000014611)	RAB28 (ENSPPYG00000014610)	HS3ST1 (ENSPPYG00000014609)	CLNK (ENSPPYG00000014608)
Gibbon	MODERN SPECIES	12	GBA3 (ENSNLEG00000016754)	ENSNLEG00000027847	ADGRA3 (ENSNLEG00000016741)	KCNIP4 (ENSNLEG00000016720)	PACRGL (ENSNLEG00000016706)	SLIT2 (ENSNLEG00000016689)	ENSNLEG00000031015	LCORL (ENSNLEG00000016684)	NCAPG (ENSNLEG00000016632)	ENSNLEG00000036017	FAM184B (ENSNLEG00000031656)	ENSNLEG00000016620	LAP3 (ENSNLEG00000016606)	CLRN2 (ENSNLEG00000016604)	QDPR (ENSNLEG00000016583)	LDB2 (ENSNLEG00000016557) ##22	ENSNLEG00000031825	ENSNLEG00000029526	TAPT1 (ENSNLEG00000016541)	PROM1 (ENSNLEG00000016422)	ENSNLEG00000027474	CD38 (ENSNLEG00000032175)	BST1 (ENSNLEG00000016391)	FAM200B (ENSNLEG00000018958)	FBXL5 (ENSNLEG00000016352)	CC2D2A (ENSNLEG00000016292)	C1QTNF7 (ENSNLEG00000016288)	ENSNLEG00000016275	ENSNLEG00000030451	BOD1L1 (ENSNLEG00000016260)	NKX3-2 (ENSNLEG00000016256)
Cercopithecidae	ANCESTRAL SPECIES	10	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000165139.b	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430	ENSGT01100000263819	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B.k	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000003682.ib.a.b.f.b.a.b	ENSGT00390000005639.a.a ##22	ENSGT00950000183208.A.c.a.f	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00940000153675.a.a.b.e.a.g.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843
Rhinopithecus	ANCESTRAL SPECIES	397																ENSGT00390000005639.a.a ##22	ENSGT00950000183208.A.c.a.f	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00940000153675.a.a.b.e.a.g.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357
Golden snub-nosed monkey	MODERN SPECIES	1401															ENSRROG00000030574	LDB2 (ENSRROG00000031191) ##22	ENSRROG00000031165
Black snub-nosed monkey	MODERN SPECIES	515															ENSRBIG00000040694	LDB2 (ENSRBIG00000036476) ##22	ENSRBIG00000031383	ENSRBIG00000028214	TAPT1 (ENSRBIG00000001303)	PROM1 (ENSRBIG00000035435)	FGFBP1 (ENSRBIG00000029998)	CD38 (ENSRBIG00000033782)	ENSRBIG00000031766	BST1 (ENSRBIG00000038163)	FAM200B (ENSRBIG00000030919)	FBXL5 (ENSRBIG00000033592)	CC2D2A (ENSRBIG00000028040)	C1QTNF7 (ENSRBIG00000017615)	CPEB2 (ENSRBIG00000028478)
Cercopithecinae	ANCESTRAL SPECIES	14	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000165139.b	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430	ENSGT01100000263819	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B.k	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000003682.ib.a.b.f.b.a.b	ENSGT00390000005639.a.a ##22	ENSGT00950000183208.A.c.a.f	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00940000153675.a.a.b.e.a.g.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843
Vervet Monkey	DUPLICATION
Vervet Monkey	MODERN SPECIES	19	ADGRA3 (ENSCSAG00000016562)	KCNIP4 (ENSCSAG00000016556)	PACRGL (ENSCSAG00000016548)	SLIT2 (ENSCSAG00000016541)	ENSCSAG00000016527	ENSCSAG00000016522	LCORL (ENSCSAG00000016518)	NCAPG (ENSCSAG00000016516)	DCAF16 (ENSCSAG00000019695)	FAM184B (ENSCSAG00000016499)	MED28 (ENSCSAG00000016495)	LAP3 (ENSCSAG00000016492)	CLRN2 (ENSCSAG00000016486)	QDPR (ENSCSAG00000016485)	ENSCSAG00000016479 ##22	LDB2 (ENSCSAG00000016474) ##22	TAPT1 (ENSCSAG00000016469)	PROM1 (ENSCSAG00000016436)	FGFBP2 (ENSCSAG00000019696)	FGFBP1 (ENSCSAG00000019697)	CD38 (ENSCSAG00000016422)	BST1 (ENSCSAG00000016416)	FAM200B (ENSCSAG00000019698)	FBXL5 (ENSCSAG00000016412)	CC2D2A (ENSCSAG00000016401)	C1QTNF7 (ENSCSAG00000016386)	CPEB2 (ENSCSAG00000016370)	BOD1L1 (ENSCSAG00000016349)	NKX3-2 (ENSCSAG00000016338)	RAB28 (ENSCSAG00000016331)	HS3ST1 (ENSCSAG00000019699)
Vervet Monkey	MODERN SPECIES	19	GBA3 (ENSCSAG00000016567)	ADGRA3 (ENSCSAG00000016562)	KCNIP4 (ENSCSAG00000016556)	PACRGL (ENSCSAG00000016548)	SLIT2 (ENSCSAG00000016541)	ENSCSAG00000016527	ENSCSAG00000016522	LCORL (ENSCSAG00000016518)	NCAPG (ENSCSAG00000016516)	DCAF16 (ENSCSAG00000019695)	FAM184B (ENSCSAG00000016499)	MED28 (ENSCSAG00000016495)	LAP3 (ENSCSAG00000016492)	CLRN2 (ENSCSAG00000016486)	QDPR (ENSCSAG00000016485)	ENSCSAG00000016479 ##22	LDB2 (ENSCSAG00000016474) ##22	TAPT1 (ENSCSAG00000016469)	PROM1 (ENSCSAG00000016436)	FGFBP2 (ENSCSAG00000019696)	FGFBP1 (ENSCSAG00000019697)	CD38 (ENSCSAG00000016422)	BST1 (ENSCSAG00000016416)	FAM200B (ENSCSAG00000019698)	FBXL5 (ENSCSAG00000016412)	CC2D2A (ENSCSAG00000016401)	C1QTNF7 (ENSCSAG00000016386)	CPEB2 (ENSCSAG00000016370)	BOD1L1 (ENSCSAG00000016349)	NKX3-2 (ENSCSAG00000016338)	RAB28 (ENSCSAG00000016331)
Cercopithecinae_a	ANCESTRAL SPECIES	13	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430	ENSGT01100000263819	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B.k	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000003682.ib.a.b.f.b.a.b	ENSGT00390000005639.a.a ##22	ENSGT00950000183208.A.c.a.f	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00940000153675.a.a.b.e.a.g.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843
Cercopithecinae_b	ANCESTRAL SPECIES	6	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430	ENSGT01100000263819	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B.k	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000003682.ib.a.b.f.b.a.b	ENSGT00390000005639.a.a ##22	ENSGT00950000183208.A.c.a.f	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00940000153675.a.a.b.e.a.g.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843
Olive baboon	MODERN SPECIES	13	ADGRA3 (ENSPANG00000008144)	KCNIP4 (ENSPANG00000001124)	ENSPANG00000046365	PACRGL (ENSPANG00000001123)	SLIT2 (ENSPANG00000007747)	ENSPANG00000044021	LCORL (ENSPANG00000024022)	NCAPG (ENSPANG00000000938)	DCAF16 (ENSPANG00000004496)	FAM184B (ENSPANG00000011425)	MED28 (ENSPANG00000007793)	LAP3 (ENSPANG00000005671)	CLRN2 (ENSPANG00000018188)	QDPR (ENSPANG00000010254)	ENSPANG00000038279	LDB2 (ENSPANG00000020686) ##22	TAPT1 (ENSPANG00000000667)	PROM1 (ENSPANG00000007794)	FGFBP2 (ENSPANG00000040762)	FGFBP1 (ENSPANG00000042480)	CD38 (ENSPANG00000005673)	BST1 (ENSPANG00000021309)	FBXL5 (ENSPANG00000013334)	CC2D2A (ENSPANG00000019572)	C1QTNF7 (ENSPANG00000020404)	CPEB2 (ENSPANG00000017542)	BOD1L1 (ENSPANG00000015664)	ENSPANG00000045576	NKX3-2 (ENSPANG00000037663)	RAB28 (ENSPANG00000023566)	ENSPANG00000043519
Cercopithecinae_d	ANCESTRAL SPECIES	91	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430	ENSGT01100000263819	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B.k	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00950000183208.A.c.a.f	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00390000017291.a	ENSGT00940000153675.a.a.b.e.a.g.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833
Drill	MODERN SPECIES	886																LDB2 (ENSMLEG00000035667) ##22	TAPT1 (ENSMLEG00000022768)	PROM1 (ENSMLEG00000042255)	FGFBP2 (ENSMLEG00000024485)	CD38 (ENSMLEG00000040865)	ENSMLEG00000041465	BST1 (ENSMLEG00000043994)	FAM200B (ENSMLEG00000001723)	FBXL5 (ENSMLEG00000035701)	CC2D2A (ENSMLEG00000030949)	C1QTNF7 (ENSMLEG00000035184)	ENSMLEG00000026496	BOD1L1 (ENSMLEG00000028382)	NKX3-2 (ENSMLEG00000032257)	RAB28 (ENSMLEG00000039521)	ENSMLEG00000043131
Sooty mangabey	MODERN SPECIES	551	PPARGC1A (ENSCATG00000032575) ##21	GBA3 (ENSCATG00000042364)	ADGRA3 (ENSCATG00000042545)	KCNIP4 (ENSCATG00000031858)	PACRGL (ENSCATG00000043616)	SLIT2 (ENSCATG00000044093)	LCORL (ENSCATG00000032265)	NCAPG (ENSCATG00000032636)	DCAF16 (ENSCATG00000014975)	ENSCATG00000016096	FAM184B (ENSCATG00000040065)	MED28 (ENSCATG00000030546)	LAP3 (ENSCATG00000040965)	CLRN2 (ENSCATG00000032386)	QDPR (ENSCATG00000029669)	LDB2 (ENSCATG00000019886) ##22	ENSCATG00000040373	TAPT1 (ENSCATG00000042001)	PROM1 (ENSCATG00000035341)	CD38 (ENSCATG00000045367)	ENSCATG00000030711	BST1 (ENSCATG00000003303)	FAM200B (ENSCATG00000020983)	FBXL5 (ENSCATG00000041236)	CC2D2A (ENSCATG00000037758)	C1QTNF7 (ENSCATG00000014989)	CPEB2 (ENSCATG00000040126)	ENSCATG00000019681	BOD1L1 (ENSCATG00000040508)	NKX3-2 (ENSCATG00000042215)	RAB28 (ENSCATG00000038542)
Macaca	ANCESTRAL SPECIES	25	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430	ENSGT01100000263819	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B.k	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00940000153675.a.a.b.e.a.g.a	ENSGT00390000017291.b	ENSGT00940000164387	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00390000012691.c.b.n	ENSGT00940000156198.c.a	ENSGT00940000161843
Pig-tailed macaque	MODERN SPECIES	141	PPARGC1A (ENSMNEG00000028682) ##21	GBA3 (ENSMNEG00000038431)	ADGRA3 (ENSMNEG00000030797)	KCNIP4 (ENSMNEG00000031720)	PACRGL (ENSMNEG00000038893)	SLIT2 (ENSMNEG00000043095)	LCORL (ENSMNEG00000043804)	NCAPG (ENSMNEG00000039630)	DCAF16 (ENSMNEG00000024029)	ENSMNEG00000026854	FAM184B (ENSMNEG00000006055)	MED28 (ENSMNEG00000037815)	LAP3 (ENSMNEG00000044815)	CLRN2 (ENSMNEG00000045042)	QDPR (ENSMNEG00000033228)	LDB2 (ENSMNEG00000036183) ##22	TAPT1 (ENSMNEG00000030185)	PROM1 (ENSMNEG00000044286)	CD38 (ENSMNEG00000042584)	ENSMNEG00000045107	BST1 (ENSMNEG00000028047)	FAM200B (ENSMNEG00000007314)	FBXL5 (ENSMNEG00000041054)	CC2D2A (ENSMNEG00000043856)	C1QTNF7 (ENSMNEG00000041355)	CPEB2 (ENSMNEG00000041798)	ENSMNEG00000029766	ENSMNEG00000006879	BOD1L1 (ENSMNEG00000037331)	NKX3-2 (ENSMNEG00000037382)	RAB28 (ENSMNEG00000028531)
Macaca_a	ANCESTRAL SPECIES	12	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B.k	ENSGT00940000163244.d.b.a.b.a.a.d.a	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00390000012691.c.b.n	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00910000148058
Crab-eating macaque	MODERN SPECIES	15	KCNIP4 (ENSMFAG00000042661)	PACRGL (ENSMFAG00000029845)	SLIT2 (ENSMFAG00000000096)	ENSMFAG00000054658	LCORL (ENSMFAG00000043664)	NCAPG (ENSMFAG00000000798)	DCAF16 (ENSMFAG00000029339)	FAM184B (ENSMFAG00000002820)	MED28 (ENSMFAG00000058102)	LAP3 (ENSMFAG00000000500)	ENSMFAG00000052471	CLRN2 (ENSMFAG00000031177)	QDPR (ENSMFAG00000039731)	ENSMFAG00000051856	ENSMFAG00000058020	LDB2 (ENSMFAG00000038875) ##22	ENSMFAG00000062604	TAPT1 (ENSMFAG00000033652)	PROM1 (ENSMFAG00000043852)	FGFBP2 (ENSMFAG00000053131)	FGFBP1 (ENSMFAG00000056719)	CD38 (ENSMFAG00000034115)	BST1 (ENSMFAG00000043527)	CC2D2A (ENSMFAG00000035103)	FBXL5 (ENSMFAG00000043321)	C1QTNF7 (ENSMFAG00000025264)	CPEB2 (ENSMFAG00000006541)	ENSMFAG00000024087	BOD1L1 (ENSMFAG00000036973)	NKX3-2 (ENSMFAG00000061419)	RAB28 (ENSMFAG00000037037)
Rhesus	MODERN SPECIES	15	ENSMMUG00000056216	ENSMMUG00000053542	ENSMMUG00000056032	KCNIP4 (ENSMMUG00000030380)	PACRGL (ENSMMUG00000017670)	SLIT2 (ENSMMUG00000002614)	LCORL (ENSMMUG00000018073)	NCAPG (ENSMMUG00000018070)	DCAF16 (ENSMMUG00000056606)	FAM184B (ENSMMUG00000018067)	MED28 (ENSMMUG00000053953)	LAP3 (ENSMMUG00000005732)	ENSMMUG00000064012	CLRN2 (ENSMMUG00000005731)	QDPR (ENSMMUG00000005730)	LDB2 (ENSMMUG00000023116) ##22	TAPT1 (ENSMMUG00000001747)	PROM1 (ENSMMUG00000008164)	FGFBP2 (ENSMMUG00000008163)	FGFBP1 (ENSMMUG00000008162)	CD38 (ENSMMUG00000015298)	BST1 (ENSMMUG00000015294)	FBXL5 (ENSMMUG00000009388)	CC2D2A (ENSMMUG00000009383)	C1QTNF7 (ENSMMUG00000053853)	CPEB2 (ENSMMUG00000001384)	ENSMMUG00000059742	ENSMMUG00000051707	BOD1L1 (ENSMMUG00000022027)	NKX3-2 (ENSMMUG00000062096)	RAB28 (ENSMMUG00000022025)
Atlantogenata	ANCESTRAL SPECIES	46	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000165139.b	ENSGT00940000162414	ENSGT00390000001577	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b
Xenarthra	ANCESTRAL SPECIES																	ENSGT00390000005639.a.a ##22
Armadillo	MODERN SPECIES	3215							ENSDNOG00000001545	NCAPG (ENSDNOG00000001539)	ENSDNOG00000035551	FAM184B (ENSDNOG00000019334)	ENSDNOG00000046020	ENSDNOG00000008526	LAP3 (ENSDNOG00000011092)	QDPR (ENSDNOG00000009138)	ENSDNOG00000033336	LDB2 (ENSDNOG00000006403) ##22
Sloth	MODERN SPECIES	5769																LDB2 (ENSCHOG00000004716) ##22
Afrotheria	ANCESTRAL SPECIES	53	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b
Afrotheria_a	ANCESTRAL SPECIES	50	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b
Hyrax	MODERN SPECIES	5312																LDB2 (ENSPCAG00000013010) ##22
Elephant	MODERN SPECIES	164	DHX15 (ENSLAFG00000005466)	PPARGC1A (ENSLAFG00000012981) ##21	ENSLAFG00000030988	GBA3 (ENSLAFG00000029577)	ADGRA3 (ENSLAFG00000003897)	KCNIP4 (ENSLAFG00000005792)	PACRGL (ENSLAFG00000005786)	SLIT2 (ENSLAFG00000017738)	ENSLAFG00000009691	NCAPG (ENSLAFG00000009686)	FAM184B (ENSLAFG00000015420)	MED28 (ENSLAFG00000016936)	LAP3 (ENSLAFG00000016929)	CLRN2 (ENSLAFG00000016844)	QDPR (ENSLAFG00000004518)	LDB2 (ENSLAFG00000000552) ##22	ENSLAFG00000028231	TAPT1 (ENSLAFG00000003952)	PROM1 (ENSLAFG00000004007)	ENSLAFG00000000871	ENSLAFG00000013298	BST1 (ENSLAFG00000006613)	FBXL5 (ENSLAFG00000022751)	ENSLAFG00000025555	CC2D2A (ENSLAFG00000004935)	C1QTNF7 (ENSLAFG00000023327)	ENSLAFG00000007142	ENSLAFG00000007535	NKX3-2 (ENSLAFG00000031404)	RAB28 (ENSLAFG00000002485)	HS3ST1 (ENSLAFG00000017334)
Tenrec	MODERN SPECIES	6302																LDB2 (ENSETEG00000003574) ##22
Anura	ANCESTRAL SPECIES	2	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000165139	ENSGT00940000162414	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00980000201435.a.a.a	ENSGT00980000201435.a.a.b	ENSGT00980000201435.a.b	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a	ENSGT00390000017291.b	ENSGT00390000006172	ENSGT00940000155482	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00990000209835	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b
Frog	MODERN SPECIES		slit2 (ENSXETG00000020473)	ENSXETG00000043650	lcorl (ENSXETG00000039970)	ENSXETG00000036171	ncapg (ENSXETG00000023826)	FAM184B (ENSXETG00000041368)	ENSXETG00000036945	ENSXETG00000035789	ENSXETG00000037544	ENSXETG00000044296	ENSXETG00000045360	med28 (ENSXETG00000044114)	lap3 (ENSXETG00000020343)	clrn2 (ENSXETG00000030778)	qdpr (ENSXETG00000020341)	ldb2 (ENSXETG00000020339) ##22	tapt1 (ENSXETG00000020338)	prom1 (ENSXETG00000020336)	fgfbp2 (ENSXETG00000020335)	fgfbp1 (ENSXETG00000020334)	ENSXETG00000041997	cd38 (ENSXETG00000034214)	fbxl5 (ENSXETG00000020331)	cc2d2a (ENSXETG00000032891)	c1qtnf7 (ENSXETG00000020325)	cpeb2 (ENSXETG00000020324)	bod1l1 (ENSXETG00000036067)	nkx3-2 (ENSXETG00000037748)	rab28 (ENSXETG00000026677)	hs3st1 (ENSXETG00000006969)	ENSXETG00000047845
Leishan spiny toad	MODERN SPECIES		ENSLLEG00000003733	ENSLLEG00000003737	ENSLLEG00000003743	NCAPG (ENSLLEG00000000091)	ENSLLEG00000000170	ENSLLEG00000000200	ENSLLEG00000000250	ENSLLEG00000000379	ENSLLEG00000000558	ENSLLEG00000000559	LAP3 (ENSLLEG00000000579)	CLRN2 (ENSLLEG00000000710)	ENSLLEG00000000731	QDPR (ENSLLEG00000000737)	ENSLLEG00000000760	LDB2 (ENSLLEG00000000770) ##22	ENSLLEG00000000844	TAPT1 (ENSLLEG00000000856)	PROM1 (ENSLLEG00000000952)	ENSLLEG00000001228	ENSLLEG00000001234	FGFBP1 (ENSLLEG00000001245)	ENSLLEG00000001255	CD38 (ENSLLEG00000001269)	BST1 (ENSLLEG00000001295)	FBXL5 (ENSLLEG00000001331)	ENSLLEG00000001406	CC2D2A (ENSLLEG00000001435)	ENSLLEG00000001582	C1QTNF7 (ENSLLEG00000001590)	CPEB2 (ENSLLEG00000001629)
Coelacanth	MODERN SPECIES	286					ENSLACG00000017771	ENSLACG00000017737	NCAPG (ENSLACG00000017517)	FAM184B (ENSLACG00000017366)	ENSLACG00000017325	med28 (ENSLACG00000017051)	ENSLACG00000015186	ENSLACG00000015131	LAP3 (ENSLACG00000014845)	CLRN2 (ENSLACG00000014795)	QDPR (ENSLACG00000014616)	LDB2 (ENSLACG00000009710) ##22	TAPT1 (ENSLACG00000007451)	PROM1 (ENSLACG00000022277)
Actinopterygii	ANCESTRAL SPECIES	20	ENSGT00950000183137.b.a ##21	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00390000017291.a.e	ENSGT00390000017291.a.f	ENSGT00390000006172	ENSGT00940000155482	ENSGT01030000235096	ENSGT00940000159588	ENSGT00940000160357	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449
Reedfish	MODERN SPECIES	13	ENSECRG00000002874	ADGRA3 (ENSECRG00000002915)	ENSECRG00000003005	KCNIP4 (ENSECRG00000003040)	PACRGL (ENSECRG00000003085)	slit2 (ENSECRG00000003116)	ENSECRG00000003171	ENSECRG00000003198	ncapg (ENSECRG00000003222)	ENSECRG00000003249	ENSECRG00000003262	med28 (ENSECRG00000003283)	lap3 (ENSECRG00000003303)	clrn2 (ENSECRG00000003321)	qdprb.4 (ENSECRG00000003330)	ldb2a (ENSECRG00000003347) ##22	tapt1b (ENSECRG00000003379)	prom1b (ENSECRG00000003446)	fgfbp2b (ENSECRG00000003529)	ENSECRG00000003538	CD38 (ENSECRG00000003552)	fbxl5 (ENSECRG00000003565)	CC2D2A (ENSECRG00000003589)	CC2D2A (ENSECRG00000003621)	C1QTNF7 (ENSECRG00000003634)	CPEB2 (ENSECRG00000003646)	ENSECRG00000003675	nkx3-2 (ENSECRG00000003703)	RAB28 (ENSECRG00000003711)	HS3ST1 (ENSECRG00000003716)	ENSECRG00000003719
Neopterygii	ANCESTRAL SPECIES	2	ENSGT00940000160623	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a	ENSGT00940000154372.a.b	ENSGT00940000155988	ENSGT00950000183130.A	ENSGT00940000155372	ENSGT00390000012346	ENSGT01060000248588.a.c.b	ENSGT00640000091487	ENSGT00940000156842	ENSGT00390000010494	ENSGT00940000162309	ENSGT00390000008984	ENSGT00940000167088
Spotted gar	MODERN SPECIES	670	ugt8 (ENSLOCG00000003443)	ENSLOCG00000003426	ENSLOCG00000003421	NDST4 (ENSLOCG00000003401)	mettl14 (ENSLOCG00000003385)	PRSS12 (ENSLOCG00000003365)	slit2 (ENSLOCG00000003341)	ENSLOCG00000003324	ncapg (ENSLOCG00000003287)	fam184b (ENSLOCG00000003271)	HASPIN (ENSLOCG00000003251)	med28 (ENSLOCG00000003244)	lap3 (ENSLOCG00000003221)	clrn2 (ENSLOCG00000003202)	qdprb.4 (ENSLOCG00000003181)	ldb2a (ENSLOCG00000003158) ##22	tapt1b (ENSLOCG00000003138)	prom1b (ENSLOCG00000003057)	fgfbp2b (ENSLOCG00000018182)	FGFBP1 (ENSLOCG00000018180)	anxa5b (ENSLOCG00000003034)	exosc9 (ENSLOCG00000002999)	ccna2 (ENSLOCG00000002979)	bbs7 (ENSLOCG00000002959)	trpc3 (ENSLOCG00000002947)	kiaa1109 (ENSLOCG00000002900)	adad1 (ENSLOCG00000002873)	il21 (ENSLOCG00000002859)	ENSLOCG00000002846	BBS12 (ENSLOCG00000002831)	fgf2 (ENSLOCG00000002819)
Osteoglossocephalai	ANCESTRAL SPECIES	109	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	145	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003	ENSGT00940000158402	ENSGT00940000162414.a	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a.k ##22	ENSGT00390000010628.a	ENSGT00530000063586.b.c.a	ENSGT00940000154372.a.a.b	ENSGT00940000154372.a.b.a	ENSGT00940000155988.b	ENSGT00950000183130.A
Asian bonytongue	MODERN SPECIES	7	cpe (ENSSFOG00015014025)	tll1 (ENSSFOG00015013977)	spock3 (ENSSFOG00015013915)	ugt8 (ENSSFOG00015013892)	NDST4 (ENSSFOG00015013821)	PRSS12 (ENSSFOG00015013772)	mettl14 (ENSSFOG00015013743)	slit2 (ENSSFOG00015013660)	ENSSFOG00015030965	ncapg (ENSSFOG00015013585)	ENSSFOG00015013567	ENSSFOG00015025280	med28 (ENSSFOG00015013534)	lap3 (ENSSFOG00015013505)	qdprb.4 (ENSSFOG00015013456)	LDB2 (ENSSFOG00015028235) ##22	tapt1b (ENSSFOG00015013331)	prom1b (ENSSFOG00015013078)	fgfbp2b (ENSSFOG00015025776)	ENSSFOG00015025553	ANXA5 (ENSSFOG00015012934)	exosc9 (ENSSFOG00015012903)	tmem33 (ENSSFOG00015012886)	phox2bb (ENSSFOG00015032744)	LIMCH1 (ENSSFOG00015012683)	UCHL1 (ENSSFOG00015029264)	APBB2 (ENSSFOG00015012532)	ENSSFOG00015012494	rbm47 (ENSSFOG00015012445)	CHRNA9 (ENSSFOG00015012414)	rhoh (ENSSFOG00015012400)
P. kingsleyae	MODERN SPECIES	6	NDST4 (ENSPKIG00000021707)	PRSS12 (ENSPKIG00000021778)	mettl14 (ENSPKIG00000021821)	slit2 (ENSPKIG00000021961)	ENSPKIG00000022216	ENSPKIG00000022230	ENSPKIG00000022243	ENSPKIG00000022260	ncapg (ENSPKIG00000022276)	fam184b (ENSPKIG00000022319)	ENSPKIG00000022358	med28 (ENSPKIG00000022383)	lap3 (ENSPKIG00000022415)	clrn2 (ENSPKIG00000022458)	qdprb.4 (ENSPKIG00000022475)	LDB2 (ENSPKIG00000022532) ##22	tapt1b (ENSPKIG00000022626)	prom1b (ENSPKIG00000022761)	ENSPKIG00000022927	ENSPKIG00000022941
Osteoglossiformes	ANCESTRAL SPECIES	60	ENSGT00940000158467.a	ENSGT00510000047351.b.k	ENSGT00940000165274	ENSGT00940000155973.b.d	ENSGT00730000111184	ENSGT00940000158285	ENSGT00940000157483	ENSGT00390000008593.a	ENSGT00940000159253	ENSGT00940000158645.k	ENSGT00940000156344.b	ENSGT00940000156950.c	ENSGT00420000029769.b	ENSGT00940000158241.c	ENSGT00940000156495.o	ENSGT00390000005639.a.a.l ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000155988.a	ENSGT00940000155372	ENSGT00390000012346	ENSGT00940000159958.a	ENSGT00950000183159.a.v.b.w	ENSGT00940000157306.ib	ENSGT00390000000002.a.a.a.nb.a	ENSGT00940000157352.b	ENSGT00940000156979.a	ENSGT00940000156077	ENSGT00940000160078.b	ENSGT00940000155155
Asian bonytongue	MODERN SPECIES	20	wdr21 (ENSSFOG00015000375)	pigh (ENSSFOG00015032234)	ino80 (ENSSFOG00015000183)	chac1 (ENSSFOG00015000169)	LRAT (ENSSFOG00015027134)	rbm46 (ENSSFOG00015000087)	npy2rl (ENSSFOG00015024149)	tdo2a (ENSSFOG00015024146)	CTSO (ENSSFOG00015033017)	PDGFC (ENSSFOG00015024143)	glrbb (ENSSFOG00015024141)	GRIA2 (ENSSFOG00015024135)	GASK1B (ENSSFOG00015024133)	RAPGEF2 (ENSSFOG00015024131)	fstl5 (ENSSFOG00015024129)	LDB2 (ENSSFOG00015013403) ##22	TAPT1 (ENSSFOG00015024126)	prom1a (ENSSFOG00015024120)	fgfbp2a (ENSSFOG00015027699)	ANXA5 (ENSSFOG00015024113)	ccna2 (ENSSFOG00015024112)	bbs7 (ENSSFOG00015024109)	phox2bb (ENSSFOG00015012871)	LIMCH1 (ENSSFOG00015024106)	uchl1 (ENSSFOG00015024104)	APBB2 (ENSSFOG00015024103)	NSUN7 (ENSSFOG00015024102)	rbm47 (ENSSFOG00015028741)	CHRNA9 (ENSSFOG00015024099)	RHOH (ENSSFOG00015027674)	PDS5A (ENSSFOG00015024094)
P. kingsleyae	MODERN SPECIES	112	fga (ENSPKIG00000015509)	ENSPKIG00000015390	LRAT (ENSPKIG00000015351)	rbm46 (ENSPKIG00000015334)	npy2rl (ENSPKIG00000015322)	tdo2a (ENSPKIG00000015289)	CTSO (ENSPKIG00000015268)	PDGFC (ENSPKIG00000015228)	glrbb (ENSPKIG00000015173)	gria2b (ENSPKIG00000015050)	GASK1B (ENSPKIG00000015004)	rxfp1 (ENSPKIG00000014962)	RAPGEF2 (ENSPKIG00000014544)	ENSPKIG00000014380	fstl5 (ENSPKIG00000014296)	LDB2 (ENSPKIG00000014200) ##22	TAPT1 (ENSPKIG00000014155)	prom1a (ENSPKIG00000013999)	fgfbp2a (ENSPKIG00000013943)	ANXA5 (ENSPKIG00000013918)	ccna2 (ENSPKIG00000013895)	bbs7 (ENSPKIG00000013836)	phox2bb (ENSPKIG00000013815)	LIMCH1 (ENSPKIG00000013705)	uchl1 (ENSPKIG00000013640)	APBB2 (ENSPKIG00000013543)	NSUN7 (ENSPKIG00000013497)	rbm47 (ENSPKIG00000013431)	CHRNA9 (ENSPKIG00000013376)	RHOH (ENSPKIG00000013358)	PDS5A (ENSPKIG00000013324)
Clupeocephala	ANCESTRAL SPECIES	181	ENSGT00390000008593.a	ENSGT00940000159253	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00390000012736	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346
Otomorpha	DUPLICATION
Otomorpha	ANCESTRAL SPECIES	125	ENSGT00390000008593.a	ENSGT00940000159253	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00390000012736	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a.m ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00390000012346	ENSGT00940000155372	ENSGT00390000011368	ENSGT00940000159958.d	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b	ENSGT00940000160403	ENSGT00940000160738	ENSGT00950000183201.b.b.b.a	ENSGT00950000182915.a.a.a
Clupeiformes	ANCESTRAL SPECIES	37	ENSGT01030000234566.e.b.a.a.a.b	ENSGT00390000008593.a	ENSGT00940000159253	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a.m ##22	ENSGT00940000157891	ENSGT00950000183033.a.b.b	ENSGT00390000000618	ENSGT00940000159322	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b ##21	ENSGT00940000156471.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000159747	ENSGT00940000157712	ENSGT00980000203236	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b
Denticle herring	MODERN SPECIES	9	ENSDCDG00000021605	tdo2a (ENSDCDG00000021606)	CTSO (ENSDCDG00000021608)	PDGFC (ENSDCDG00000021610)	glrbb (ENSDCDG00000021613)	gria2b (ENSDCDG00000021750)	GASK1B (ENSDCDG00000024996)	tmem144b (ENSDCDG00000025000)	rxfp1 (ENSDCDG00000025029)	etfdh (ENSDCDG00000025059)	ppid (ENSDCDG00000026598)	ENSDCDG00000026600	RAPGEF2 (ENSDCDG00000026686)	fstl5 (ENSDCDG00000030629)	qdpra (ENSDCDG00000030633)	ldb2a (ENSDCDG00000030637) ##22	KLHL3 (ENSDCDG00000030693)	fam13b (ENSDCDG00000030710)	cxcl14 (ENSDCDG00000030730)	slit3 (ENSDCDG00000030972)	ENSDCDG00000033534	ARHGEF37 (ENSDCDG00000033535)	ENSDCDG00000033537 ##21	pde6a (ENSDCDG00000033541)	SLC26A2 (ENSDCDG00000033556)	HTR4 (ENSDCDG00000033559)	lman2 (ENSDCDG00000033561)	tmed9 (ENSDCDG00000033562)	b4galt7 (ENSDCDG00000033566)	emx3 (ENSDCDG00000033567)	ENSDCDG00000033569
Atlantic herring	MODERN SPECIES	22	cd74a (ENSCHAG00000021981)	SLC35A4 (ENSCHAG00000021972)	ENSCHAG00000021967	ENSCHAG00000021941	csf1ra (ENSCHAG00000021739)	pdgfrb (ENSCHAG00000021722)	pdgfrb (ENSCHAG00000021639)	ENSCHAG00000021627	ENSCHAG00000021619	ENSCHAG00000021572	RAPGEF2 (ENSCHAG00000019881)	ENSCHAG00000019832	RAPGEF2 (ENSCHAG00000019369)	fstl5 (ENSCHAG00000018863)	qdpra (ENSCHAG00000018755)	ENSCHAG00000018698 ##22	ENSCHAG00000018684	ENSCHAG00000018664	ENSCHAG00000018638	ENSCHAG00000018570	fam13b (ENSCHAG00000018487)	cxcl14 (ENSCHAG00000018407)	ENSCHAG00000018392	slit3 (ENSCHAG00000014782)	ARHGEF37 (ENSCHAG00000014629)	ENSCHAG00000014619 ##21	pde6a (ENSCHAG00000014049)	SLC26A2 (ENSCHAG00000014030)	HTR4 (ENSCHAG00000013996)	HTR4 (ENSCHAG00000013829)	lman2 (ENSCHAG00000013600)
Otophysi	ANCESTRAL SPECIES	10	ENSGT00390000008828.gb	ENSGT00940000156526.b	ENSGT00510000050125	ENSGT00940000159799	ENSGT00940000153451.a.a.b	ENSGT00940000158978.a.a	ENSGT00940000156647.a	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00390000012736	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a.m ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00390000012346	ENSGT00940000155372	ENSGT00390000011368	ENSGT00940000165124.b	ENSGT00940000164963.c.a	ENSGT00940000164685.b	ENSGT00840000132118	ENSGT00940000175691	ENSGT00940000153668.B	ENSGT00940000156001.d
Characiphysae	ANCESTRAL SPECIES	21	ENSGT00390000004827	ENSGT00940000160288	ENSGT00390000008828.gb	ENSGT00940000156526.b	ENSGT00510000050125	ENSGT00940000159799	ENSGT00940000153451.a.a.b	ENSGT00940000158978.a.a	ENSGT00940000156647.a	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a.m ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00390000012346	ENSGT00940000155372	ENSGT00390000011368	ENSGT00940000165124.b	ENSGT00940000164963.c.a	ENSGT00940000164685.b	ENSGT00940000164374.B.c.b	ENSGT00940000165332.A	ENSGT00940000155608	ENSGT00940000163832
Channel catfish	MODERN SPECIES	27	setd7 (ENSIPUG00000017667)	ENSIPUG00000017659	scocb (ENSIPUG00000017633)	mgat4d (ENSIPUG00000017556)	ENSIPUG00000017532	simc1 (ENSIPUG00000017519)	cnot6b (ENSIPUG00000017482)	ADAMTS2 (ENSIPUG00000017438)	rxfp1 (ENSIPUG00000017384)	etfdh (ENSIPUG00000017331)	PPID (ENSIPUG00000017290)	c8h4orf45 (ENSIPUG00000017276)	rapgef2 (ENSIPUG00000017181)	fstl5 (ENSIPUG00000017120)	qdpra (ENSIPUG00000017094)	Ldb2 (ENSIPUG00000017022) ##22	TAPT1 (ENSIPUG00000016959)	prom1a (ENSIPUG00000016757)	fgfbp2a (ENSIPUG00000016701)	ENSIPUG00000016688	anxa5a (ENSIPUG00000016663)	anxa5a (ENSIPUG00000016644)	bbs7 (ENSIPUG00000016543)	ccna2 (ENSIPUG00000016508)	tmem33 (ENSIPUG00000016439)	CRB32 (ENSIPUG00000016391)	ENSIPUG00000016349	ENSIPUG00000016320	ENSIPUG00000016305	mif (ENSIPUG00000016276)	ENSIPUG00000016254
Characiphysae_b	ANCESTRAL SPECIES	16	ENSGT00390000008183	ENSGT00390000004827	ENSGT00940000160288	ENSGT00390000008828.gb	ENSGT00940000156526.b	ENSGT00510000050125	ENSGT00940000159799	ENSGT00940000153451.a.a.b	ENSGT00940000158978.a.a	ENSGT00940000156647.a	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a.m ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00390000012346	ENSGT00940000155372	ENSGT00390000011368	ENSGT00940000165124.b	ENSGT00940000164963.c.a	ENSGT00940000164685.b	ENSGT00940000164374.B.c.b	ENSGT00940000165332.A	ENSGT00940000155608	ENSGT00940000163832
Characoidei	ANCESTRAL SPECIES	56	ENSGT00390000008183	ENSGT00390000004827	ENSGT00940000160288	ENSGT00390000008828.gb	ENSGT00940000156526.b	ENSGT00510000050125.c	ENSGT00940000159799	ENSGT00940000153451.a.a.b	ENSGT00940000158978.a.a	ENSGT00940000156647.a	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a.m ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00390000012346	ENSGT00940000155372	ENSGT00390000011368	ENSGT00940000165124.b	ENSGT00940000164963.c.a	ENSGT00940000164685.b	ENSGT00840000132118	ENSGT00940000165332.A	ENSGT00940000155608	ENSGT00940000163832
Mexicana tetra	MODERN SPECIES	16	tomm5 (ENSAMXG00000033871)	grhpra (ENSAMXG00000037725)	LINGO2 (ENSAMXG00000035249)	gar1 (ENSAMXG00000015752)	cdk5r1a (ENSAMXG00000042525)	adh5 (ENSAMXG00000015767)	eif4ea (ENSAMXG00000038623)	ENSAMXG00000038256	PCDH10 (ENSAMXG00000015801)	RAPGEF2 (ENSAMXG00000013863)	ENSAMXG00000013843	ENSAMXG00000013836	ENSAMXG00000030600	fstl5 (ENSAMXG00000037831)	qdpra (ENSAMXG00000029100)	ldb2a (ENSAMXG00000013104) ##22	TAPT1 (ENSAMXG00000038075)	ENSAMXG00000040842	NTRK3 (ENSAMXG00000012174)	ENSAMXG00000036244	ENSAMXG00000038202	KLHL25 (ENSAMXG00000025580)	ENSAMXG00000041977	ENSAMXG00000032769	ENSAMXG00000036790	ENSAMXG00000042803	SV2B (ENSAMXG00000020811)	ENSAMXG00000038154	ENSAMXG00000040913	ENSAMXG00000030664	ENSAMXG00000031726
Red-bellied piranha	MODERN SPECIES	21	ENSPNAG00000028883	ENSPNAG00000028876	ENSPNAG00000004445	cnot6b (ENSPNAG00000028816)	ENSPNAG00000006026	rxfp1 (ENSPNAG00000005283)	etfdh (ENSPNAG00000028413)	ppid (ENSPNAG00000028361)	C4orf45 (ENSPNAG00000006870)	RAPGEF2 (ENSPNAG00000028245)	ENSPNAG00000027898	ENSPNAG00000027878	ENSPNAG00000006068	fstl5 (ENSPNAG00000004930)	qdpra (ENSPNAG00000027683)	ldb2a (ENSPNAG00000027623) ##22	TAPT1 (ENSPNAG00000007018)	prom1a (ENSPNAG00000004224)	ENSPNAG00000004148	ENSPNAG00000026928	anxa5a (ENSPNAG00000026915)	bbs7 (ENSPNAG00000026885)	ccna2 (ENSPNAG00000004098)	tmem33 (ENSPNAG00000026751)	cryba1l1 (ENSPNAG00000005095)	ENSPNAG00000006206	ENSPNAG00000026643	ENSPNAG00000005267	ENSPNAG00000004727	ENSPNAG00000004071	mif (ENSPNAG00000006708)
Electric eel	MODERN SPECIES	34							rxfp1 (ENSEEEG00000015533)	etfdh (ENSEEEG00000015499)	ppid (ENSEEEG00000015492)	C4orf45 (ENSEEEG00000015491)	RAPGEF2 (ENSEEEG00000015487)	ENSEEEG00000015483	fstl5 (ENSEEEG00000015479)	qdpra (ENSEEEG00000015476)	ENSEEEG00000015475	ldb2a (ENSEEEG00000015474) ##22	TAPT1 (ENSEEEG00000015472)	prom1a (ENSEEEG00000015456)	ENSEEEG00000015450	anxa5a (ENSEEEG00000015449)	bbs7 (ENSEEEG00000015443)	ccna2 (ENSEEEG00000015439)	tmem33 (ENSEEEG00000015437)	cryba1l1 (ENSEEEG00000015423)	ENSEEEG00000015421	ENSEEEG00000015415	ENSEEEG00000015358	ENSEEEG00000015349	mif (ENSEEEG00000015347)	ENSEEEG00000015346	ENSEEEG00000015345
Cyprinoidei	ANCESTRAL SPECIES	31	ENSGT00940000165332.A	ENSGT00390000008828.gb	ENSGT00940000156526.b	ENSGT00510000050125	ENSGT00940000159799	ENSGT00940000153451.a.a.b	ENSGT00940000158978.a.a	ENSGT00940000156647.a	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a.m ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000155988.d	ENSGT00390000012346	ENSGT00940000155372	ENSGT00390000011368	ENSGT00940000165124.b	ENSGT00940000164963.c.a	ENSGT00940000164685.b	ENSGT00840000132118.a	ENSGT00940000160288	ENSGT00390000004827	ENSGT00390000008183	ENSGT00940000157090.g	ENSGT00390000002932
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	39	ENSGT00390000008828.gb.a	ENSGT00940000156526.b.c	ENSGT00510000050125.e	ENSGT00940000159799.n	ENSGT00940000153451.a.a.b.a	ENSGT00940000158978.a.a.d	ENSGT00940000156647.a.u.a	ENSGT00940000158241.f	ENSGT00390000010773.d	ENSGT00940000154672.ib	ENSGT00940000156418.w.a	ENSGT00940000161814.g.a.c.a.b	ENSGT00940000162818.c.a.g.a.d.b	ENSGT00940000156495.j.b	ENSGT00390000000470.n.b	ENSGT00390000005639.a.a.m.a ##22	ENSGT00390000010628.b.a	ENSGT00530000063586.b.c.b.a	ENSGT00940000154372.a.a.a.a	ENSGT00940000154372.a.a.a.b	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d.c	ENSGT00940000155988.d.d	ENSGT00390000012346	ENSGT00940000155372.q	ENSGT00390000011368.b.a	ENSGT00940000165124.b.b	ENSGT00940000164963.c.a.b	ENSGT00940000164685.b.a	ENSGT00940000160288.g	ENSGT00390000004827.d
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	5	rxfp1 (ENSCARG00000059704)	etfdh (ENSCARG00000059915)	ppid (ENSCARG00000060825)	RAPGEF2 (ENSCARG00000061225)	ENSCARG00000062082	ENSCARG00000062123	ENSCARG00000062182	pcdh10b (ENSCARG00000062212)	ENSCARG00000062275	adra1bb (ENSCARG00000062279)	eif4ea (ENSCARG00000062290)	adh5 (ENSCARG00000062498)	gar1 (ENSCARG00000063244)	ENSCARG00000063344	ENSCARG00000063353	ldb2a (ENSCARG00000063386) ##22	TAPT1 (ENSCARG00000017467)	prom1a (ENSCARG00000018340)	fgfbp2a (ENSCARG00000019130)	anxa5a (ENSCARG00000019158)	bbs7 (ENSCARG00000019424)	ccna2 (ENSCARG00000019477)	tmem33 (ENSCARG00000019492)	cryba1l1 (ENSCARG00000019505)	ENSCARG00000019514	ENSCARG00000019533	ENSCARG00000019537	mgst2 (ENSCARG00000019546)	setd7 (ENSCARG00000019552)	zgc:113425 (ENSCARG00000019560)	rab33ba (ENSCARG00000019573)
Goldfish	MODERN SPECIES	1065																ldb2a (ENSCARG00000032006) ##22	TAPT1 (ENSCARG00000030969)
Cyprininae_a	ANCESTRAL SPECIES	204														ENSGT00940000156495.j.b	ENSGT00390000000470.n.b	ENSGT00390000005639.a.a.m.a ##22	ENSGT00390000010628.b.a	ENSGT00530000063586.b.c.b.a	ENSGT00940000154372.a.a.a.a	ENSGT00940000154372.a.b.b.c	ENSGT00940000155988.d.d	ENSGT00390000012346	ENSGT00940000155372.r	ENSGT00390000011368.b.b	ENSGT00940000164963.c.a.a	ENSGT00940000165124.b.a	ENSGT00940000164685.b.b	ENSGT00940000160288.h	ENSGT00390000004827.c	ENSGT00390000008183.e	ENSGT00940000157090.g.a
Common carp reference	MODERN SPECIES	35	zgc:154054 (ENSCCRG00000070676)	ENSCCRG00000002176	ENSCCRG00000068361	ENSCCRG00000002189	cnot6b (ENSCCRG00000002191)	ENSCCRG00000078424	etfdh (ENSCCRG00000008811)	ppid (ENSCCRG00000008796)	RAPGEF2 (ENSCCRG00000039950)	ENSCCRG00000044805	ENSCCRG00000069960	ENSCCRG00000028468	ENSCCRG00000053265	fstl5 (ENSCCRG00000042108)	qdpra (ENSCCRG00000066104)	ldb2a (ENSCCRG00000043494) ##22	TAPT1 (ENSCCRG00000001743)	prom1a (ENSCCRG00000001934)	fgfbp2a (ENSCCRG00000009373)	ENSCCRG00000017064	anxa5a (ENSCCRG00000009376)	bbs7 (ENSCCRG00000023413)	ccna2 (ENSCCRG00000023383)	tmem33 (ENSCCRG00000058313)	cryba1l1 (ENSCCRG00000023401)	ENSCCRG00000023396	ENSCCRG00000054905	ENSCCRG00000061918	ENSCCRG00000080767	mgst2 (ENSCCRG00000059793)	setd7 (ENSCCRG00000078105)
Golden-line barbel	MODERN SPECIES	408														fstl5 (ENSSGRG00000055117)	qdpra (ENSSGRG00000055131)	ldb2a (ENSSGRG00000055132) ##22	TAPT1 (ENSSGRG00000055133)	prom1a (ENSSGRG00000055135)	fgfbp2a (ENSSGRG00000055151)	ENSSGRG00000055152	anxa5a (ENSSGRG00000055153)	ccna2 (ENSSGRG00000055155)	ENSSGRG00000055156	ENSSGRG00000055157	cryba1l1 (ENSSGRG00000055158)	ENSSGRG00000055159	ENSSGRG00000055160	mgst2 (ENSSGRG00000055161)	setd7 (ENSSGRG00000055162)	zgc:113425 (ENSSGRG00000055163)	rab33ba (ENSSGRG00000055164)
Cyprininae	ANCESTRAL SPECIES	179	ENSGT00940000165332.A.a	ENSGT00390000008828.gb.b	ENSGT00940000156526.b.d	ENSGT00510000050125.f	ENSGT00940000176098.a	ENSGT00940000153451.a.a.b.b	ENSGT00940000158978.a.a.c	ENSGT00940000156647.a.u.b	ENSGT00940000158241.e	ENSGT00390000010773.c	ENSGT00940000154672.hb	ENSGT00940000170113	ENSGT00940000156418.w.b	ENSGT00940000156495.i	ENSGT00390000000470.n.a	ENSGT00390000005639.a.a.m.b ##22	ENSGT00390000010628.b.b	ENSGT00530000063586.b.c.b.b
Goldfish	MODERN SPECIES	1028														fstl5 (ENSCARG00000054976)	qdpra (ENSCARG00000054959)	ldb2a (ENSCARG00000054751) ##22	TAPT1 (ENSCARG00000054478)	prom1a (ENSCARG00000045724)	fgfbp2a (ENSCARG00000045276)	ENSCARG00000045258	anxa5a (ENSCARG00000045035)	ccna2 (ENSCARG00000044731)	tmem33 (ENSCARG00000044626)	cryba1l1 (ENSCARG00000044610)	ENSCARG00000044584	ENSCARG00000044566	mgst2 (ENSCARG00000044549)	setd7 (ENSCARG00000044509)	zgc:113425 (ENSCARG00000044474)	rab33ba (ENSCARG00000044459)	mlsl (ENSCARG00000044370)
Cyprininae_a	ANCESTRAL SPECIES	179	ENSGT00940000165332.A.a	ENSGT00390000008828.gb.b	ENSGT00940000156526.b.d	ENSGT00510000050125.f	ENSGT00940000176098.a	ENSGT00940000153451.a.a.b.b	ENSGT00940000158978.a.a.c	ENSGT00940000156647.a.u.b	ENSGT00940000158241.e	ENSGT00390000010773.c	ENSGT00940000154672.hb	ENSGT00940000170113	ENSGT00940000156418.w.b	ENSGT00940000156495.i	ENSGT00390000000470.n.a	ENSGT00390000005639.a.a.m.b ##22	ENSGT00390000010628.b.b	ENSGT00530000063586.b.c.b.b	ENSGT00940000154372.a.a.a.b	ENSGT00940000154372.a.b.b.d	ENSGT00940000155988.d.c
Common carp reference	MODERN SPECIES	20	clp1 (ENSCCRG00000048042)	mif (ENSCCRG00000048043)	ENSCCRG00000048044	scocb (ENSCCRG00000048046)	zgc:154054 (ENSCCRG00000078401)	ENSCCRG00000066930	ENSCCRG00000048078	cnot6b (ENSCCRG00000015977)	ENSCCRG00000018196	rxfp1 (ENSCCRG00000008821)	etfdh (ENSCCRG00000022920)	ppid (ENSCCRG00000024616)	RAPGEF2 (ENSCCRG00000038607)	fstl5 (ENSCCRG00000006087)	qdpra (ENSCCRG00000024026)	ldb2a (ENSCCRG00000030870) ##22	TAPT1 (ENSCCRG00000029704)	prom1a (ENSCCRG00000020040)	fgfbp2a (ENSCCRG00000055611)	ENSCCRG00000080551	anxa5a (ENSCCRG00000016678)	bbs7 (ENSCCRG00000016670)	ccna2 (ENSCCRG00000039766)	tmem33 (ENSCCRG00000023351)	ENSCCRG00000023344	cryba1l1 (ENSCCRG00000053998)	ENSCCRG00000023288	mgst2 (ENSCCRG00000013646)	setd7 (ENSCCRG00000009468)	zgc:113425 (ENSCCRG00000009499)	rab33ba (ENSCCRG00000065484)
Golden-line barbel	MODERN SPECIES	305														fstl5 (ENSSGRG00000019157)	qdpra (ENSSGRG00000019159)	ldb2a (ENSSGRG00000019207) ##22	TAPT1 (ENSSGRG00000019209)	prom1a (ENSSGRG00000019249)	anxa5a (ENSSGRG00000020622)	bbs7 (ENSSGRG00000020636)	ccna2 (ENSSGRG00000020815)	tmem33 (ENSSGRG00000020816)	ENSSGRG00000020821	ENSSGRG00000020823	zgc:113425 (ENSSGRG00000020825)	rab33ba (ENSSGRG00000020826)	mlsl (ENSSGRG00000020828)	naa15a (ENSSGRG00000020840)	ndufc1 (ENSSGRG00000022187)	ENSSGRG00000022188	elf2a (ENSSGRG00000022189)
Zebrafish	MODERN SPECIES	5	ENSDARG00000086245	scocb (ENSDARG00000002217)	zgc:154054 (ENSDARG00000099923)	ENSDARG00000102956	ENSDARG00000098209	cnot6b (ENSDARG00000101072)	ENSDARG00000100772	ENSDARG00000115504	rxfp1 (ENSDARG00000090071)	etfdh (ENSDARG00000038834)	ppid (ENSDARG00000038835)	RAPGEF2 (ENSDARG00000005482)	fstl5 (ENSDARG00000040198)	qdpra (ENSDARG00000040190)	ENSDARG00000109256	ldb2a (ENSDARG00000019579) ##22	TAPT1 (ENSDARG00000073999)	prom1a (ENSDARG00000039966)	fgfbp2a (ENSDARG00000039964)	ENSDARG00000039963	anxa5a (ENSDARG00000026406)	bbs7 (ENSDARG00000059911)	ccna2 (ENSDARG00000011094)	tmem33 (ENSDARG00000041332)	cryba1l1 (ENSDARG00000032929)	ENSDARG00000007576	ENSDARG00000105494	ENSDARG00000105351	ENSDARG00000052277	ENSDARG00000105411	mgst2 (ENSDARG00000071345)
Otomorpha	ANCESTRAL SPECIES	471															ENSGT00390000000470.m	ENSGT00390000005639.a.a.n ##22	ENSGT00390000010628.a	ENSGT00530000063586.b.c.a	ENSGT00940000154372.a.a.b	ENSGT00940000154372.a.b.a	ENSGT00940000155988.c	ENSGT00940000157306	ENSGT00950000183159.a.v.a	ENSGT00940000159958.c
Clupeiformes	ANCESTRAL SPECIES	22	ENSGT00940000155038	ENSGT00940000158105	ENSGT00940000154466.cc	ENSGT00390000009191	ENSGT00940000160772	ENSGT00940000158356	ENSGT00390000009873	ENSGT00940000154593.a.b	ENSGT00940000158368	ENSGT00390000006915.d.j.a	ENSGT00940000158602	ENSGT00520000055589.d.a.b	ENSGT00940000158194	ENSGT00390000015958.c	ENSGT00390000000470.m	ENSGT00390000005639.a.a.n ##22	ENSGT00390000010628.a	ENSGT00530000063586.b.c.a	ENSGT00940000154372.a.a.b	ENSGT00940000154372.a.b.a	ENSGT00940000155988.c	ENSGT00940000157306	ENSGT00950000183159.a.v.a	ENSGT00940000159958.c	ENSGT00990000207961	ENSGT00390000009223	ENSGT00940000156167.b	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000153676.a	ENSGT00410000025556.a.a.a.b.a	ENSGT00940000157580.a.b
Atlantic herring	MODERN SPECIES	14	galntl6 (ENSCHAG00000024248)	galnt7 (ENSCHAG00000024324)	hmgb2a (ENSCHAG00000024498)	SCRG1 (ENSCHAG00000024508)	hand2 (ENSCHAG00000024514)	fbxo8 (ENSCHAG00000024519)	cep44 (ENSCHAG00000024534)	hpgd (ENSCHAG00000024535)	glra3 (ENSCHAG00000024546)	GPM6A (ENSCHAG00000024720)	wdr17 (ENSCHAG00000024838)	STOX2 (ENSCHAG00000025558)	ING2 (ENSCHAG00000025560)	ccdc149b (ENSCHAG00000025567)	qdprb.4 (ENSCHAG00000025580)	ldb2b (ENSCHAG00000025587) ##22	tapt1b (ENSCHAG00000025603)	prom1b (ENSCHAG00000025619)	fgfbp2b (ENSCHAG00000002529)	ENSCHAG00000002566	anxa5b (ENSCHAG00000002839)	uchl1 (ENSCHAG00000005743)	limch1a (ENSCHAG00000005837)	ENSCHAG00000006480	ENSCHAG00000006496	ACER2 (ENSCHAG00000006517)	asb5b (ENSCHAG00000006570)	spcs3 (ENSCHAG00000006598)	vegfc (ENSCHAG00000006654)	TENM3 (ENSCHAG00000006766)	dctd (ENSCHAG00000010185)
Denticle herring	MODERN SPECIES	14	FAM193A (ENSDCDG00000004875)	galntl6 (ENSDCDG00000004905)	galnt7 (ENSDCDG00000004931)	hmgb2a (ENSDCDG00000005230)	hand2 (ENSDCDG00000005232)	fbxo8 (ENSDCDG00000005234)	cep44 (ENSDCDG00000005235)	hpgd (ENSDCDG00000005237)	glra3 (ENSDCDG00000005262)	GPM6A (ENSDCDG00000005496)	wdr17 (ENSDCDG00000005508)	STOX2 (ENSDCDG00000005579)	ING2 (ENSDCDG00000005583)	ccdc149b (ENSDCDG00000005589)	qdprb.4 (ENSDCDG00000005606)	ldb2b (ENSDCDG00000005617) ##22	tapt1b (ENSDCDG00000006115)	prom1b (ENSDCDG00000009012)	fgfbp2b (ENSDCDG00000010816)	ENSDCDG00000010819	anxa5b (ENSDCDG00000011068)	uchl1 (ENSDCDG00000015454)	limch1a (ENSDCDG00000015502)	ENSDCDG00000015483	prom1b (ENSDCDG00000015558)	fgfbp2b (ENSDCDG00000015738)	ENSDCDG00000015743	uchl1 (ENSDCDG00000015749)	ENSDCDG00000015846	ENSDCDG00000015848	ENSDCDG00000015852
Otophysi	ANCESTRAL SPECIES	257	ENSGT00940000160078	ENSGT00940000164462	ENSGT00940000155155	ENSGT00670000098059.d	ENSGT00390000018294	ENSGT00390000015355	ENSGT00390000006234	ENSGT00390000015224.d	ENSGT00730000111066	ENSGT00940000155586.A	ENSGT00940000155527.j.b.a	ENSGT00990000203806.a	ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000000470.m	ENSGT00390000005639.a.a.n ##22	ENSGT00390000010628.a	ENSGT00530000063586.b.c.a	ENSGT00940000154372.a.a.b	ENSGT00940000154372.a.b.a	ENSGT00940000155988.c	ENSGT00940000157306	ENSGT00950000183159.a.v.a
Characiphysae	ANCESTRAL SPECIES	126	ENSGT00940000160078	ENSGT00940000164462	ENSGT00940000155155	ENSGT00670000098059.d	ENSGT00390000018294	ENSGT00390000015355	ENSGT00390000006234	ENSGT00390000015224.d	ENSGT00730000111066	ENSGT00940000155586.A	ENSGT00940000155527.j.b.a	ENSGT00990000203806.a	ENSGT00390000011749	ENSGT00410000029064	ENSGT00390000000470.m	ENSGT00390000005639.a.a.n ##22	ENSGT00390000010628.a	ENSGT00530000063586.b.c.a	ENSGT00940000154372.a.a.b	ENSGT00940000154372.a.b.a	ENSGT00940000155988.c	ENSGT00940000157306	ENSGT00950000183159.a.v.a.o	ENSGT00950000183130.A	ENSGT00940000165569	ENSGT00940000153617.C.c	ENSGT00940000155804.k.b	ENSGT00940000156979	ENSGT00530000063255.B	ENSGT00940000157580.a.b	ENSGT00850000132319.a.a.b
Channel catfish	MODERN SPECIES	21	CHRNA9 (ENSIPUG00000003284)	Rhoh (ENSIPUG00000003288)	n4bp2 (ENSIPUG00000003296)	pds5a (ENSIPUG00000003326)	Ube2k (ENSIPUG00000003431)	smim14 (ENSIPUG00000003455)	ugdh (ENSIPUG00000003462)	lias (ENSIPUG00000003506)	rpl9 (ENSIPUG00000003557)	rfc1 (ENSIPUG00000003606)	ADGRL3 (ENSIPUG00000003757)	ENSIPUG00000003791	gtf2e2 (ENSIPUG00000003793)	smim18 (ENSIPUG00000003809)	qdprb.1 (ENSIPUG00000003819)	LDB2 (ENSIPUG00000003862) ##22	tapt1 (ENSIPUG00000003883)	prom1b (ENSIPUG00000003916)	fgfbp2b (ENSIPUG00000004100)	ENSIPUG00000004122	anxa5b (ENSIPUG00000004143)	Uchl1 (ENSIPUG00000004303)	ENSIPUG00000004378	ENSIPUG00000004391	ENSIPUG00000004404	ENSIPUG00000004434	EXOSC9 (ENSIPUG00000004443)	ENSIPUG00000004502	ENSIPUG00000004572	TYRP1 (ENSIPUG00000004710)	rbm47 (ENSIPUG00000004743)
Characiphysae_b	ANCESTRAL SPECIES	131	ENSGT00940000160078	ENSGT00940000164462	ENSGT00940000155155	ENSGT00670000098059.d	ENSGT00390000018294	ENSGT00390000015355	ENSGT00390000006234	ENSGT00390000015224.d	ENSGT00730000111066	ENSGT00940000155586.A	ENSGT00940000155527.j.b.a	ENSGT00990000203806.a	ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000000470.m	ENSGT00390000005639.a.a.n ##22	ENSGT00390000010628.a	ENSGT00530000063586.b.c.a	ENSGT00940000154372.a.a.b	ENSGT00940000154372.a.b.a	ENSGT00940000155988.c	ENSGT00940000157306	ENSGT00950000183159.a.v.a.o	ENSGT00950000183130.A	ENSGT00940000165569	ENSGT00940000153617.C.c	ENSGT00940000155804.k.b	ENSGT00940000156979	ENSGT00530000063255.B	ENSGT00940000157580.a.b	ENSGT00850000132319.a.a.b
Characoidei	ANCESTRAL SPECIES	155	ENSGT00940000160078	ENSGT00940000164462	ENSGT00940000155155	ENSGT00670000098059.d	ENSGT00390000018294	ENSGT00390000015355	ENSGT00390000006234	ENSGT00390000015224.d	ENSGT00730000111066	ENSGT00940000155586.A.c	ENSGT00940000155527.j.b.a	ENSGT00990000203806.a	ENSGT00390000011749	ENSGT00410000029064	ENSGT00390000000470.m	ENSGT00390000005639.a.a.n ##22	ENSGT00390000010628.a	ENSGT00530000063586.b.c.a	ENSGT00940000154372.a.a.b	ENSGT00940000154372.a.b.a	ENSGT00940000155988.c	ENSGT00940000157306	ENSGT00950000183159.a.v.a.o	ENSGT00950000183130.A	ENSGT00940000165569	ENSGT00940000153617.C.d	ENSGT00940000153617.C.c	ENSGT00940000155804.k.b	ENSGT00940000156979	ENSGT00530000063255.B	ENSGT00940000157580.a.b
Red-bellied piranha	MODERN SPECIES	154	map9 (ENSPNAG00000000917)	gucy1a1 (ENSPNAG00000000902)	gucy1b1 (ENSPNAG00000008322)	fabp2 (ENSPNAG00000000881)	ENSPNAG00000008297	ENSPNAG00000000826	ENSPNAG00000000821	ENSPNAG00000008251	ENSPNAG00000008248	ENSPNAG00000000810	ENSPNAG00000008228	ENSPNAG00000008225	ENSPNAG00000000785	ENSPNAG00000008212	osbp (ENSPNAG00000008196)	ldb2b (ENSPNAG00000000717) ##22	tapt1b (ENSPNAG00000008134)	prom1b (ENSPNAG00000000677)	fgfbp2b (ENSPNAG00000008098)	ENSPNAG00000000663	anxa5b (ENSPNAG00000008092)	anxa5b (ENSPNAG00000008082)	uchl1 (ENSPNAG00000008068)	limch1a (ENSPNAG00000000613)	exosc9 (ENSPNAG00000000578)	ENSPNAG00000000569	ENSPNAG00000000555	ENSPNAG00000000551	ptprdb (ENSPNAG00000000548)	TYRP1 (ENSPNAG00000000543)	rbm47 (ENSPNAG00000007940)
Mexicana tetra	MODERN SPECIES	13	pds5a (ENSAMXG00000021657)	ube2kb (ENSAMXG00000034571)	smim14 (ENSAMXG00000031990)	ugdh (ENSAMXG00000021654)	lias (ENSAMXG00000018746)	rpl9 (ENSAMXG00000041237)	rfc1 (ENSAMXG00000021652)	ENSAMXG00000038437	ENSAMXG00000037739	ENSAMXG00000040505	ADGRL3 (ENSAMXG00000021645)	ENSAMXG00000037417	smim18 (ENSAMXG00000025268)	gtf2e2 (ENSAMXG00000021633)	qdprb.4 (ENSAMXG00000035389)	ldb2b (ENSAMXG00000021629) ##22	tapt1b (ENSAMXG00000013101)	prom1b (ENSAMXG00000021625)	fgfbp2b (ENSAMXG00000021623)	ENSAMXG00000021622	ENSAMXG00000037179	PTPRD (ENSAMXG00000021621)	ENSAMXG00000035941	ENSAMXG00000035944	TYRP1 (ENSAMXG00000021619)	LURAP1L (ENSAMXG00000042695)	ppp1cb (ENSAMXG00000035518)	rela (ENSAMXG00000021617)	drap1 (ENSAMXG00000034535)	MAP3K11 (ENSAMXG00000021612)	ENSAMXG00000033032
Electric eel	MODERN SPECIES	589													smim18 (ENSEEEG00000008705)	gtf2e2 (ENSEEEG00000008704)	qdprb.4 (ENSEEEG00000008700)	ldb2b (ENSEEEG00000008699) ##22	tapt1b (ENSEEEG00000008688)	prom1b (ENSEEEG00000008451)	fgfbp2b (ENSEEEG00000008433)	ENSEEEG00000008432	anxa5b (ENSEEEG00000007984)	uchl1 (ENSEEEG00000007960)	limch1a (ENSEEEG00000007957)	ENSEEEG00000007956	exosc9 (ENSEEEG00000007954)	ENSEEEG00000007907	ENSEEEG00000007879
Cyprinoidei	ANCESTRAL SPECIES	9	ENSGT00940000160078	ENSGT00940000164462	ENSGT00940000155155	ENSGT00670000098059.d	ENSGT00390000018294	ENSGT00390000015355	ENSGT00390000006234	ENSGT00390000015224.d	ENSGT00730000111066	ENSGT00940000155586.A.f	ENSGT00940000155527.j.b.a	ENSGT00990000203806.a	ENSGT00410000029064.c	ENSGT00390000011749	ENSGT00390000000470.m	ENSGT00390000005639.a.a.n ##22	ENSGT00390000010628.a	ENSGT00530000063586.b.c.a	ENSGT00940000153820.a	ENSGT00940000154372.a.a.b	ENSGT00940000154372.a.b.a	ENSGT00940000155988.c	ENSGT00940000157306	ENSGT00940000158708.a	ENSGT00940000158062.f.a	ENSGT00940000156892.b	ENSGT00940000154617.A.a.a	ENSGT00940000154761	ENSGT00940000166168	ENSGT00950000183035.b.f	ENSGT00940000154889
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	15	ENSGT00940000160078.d	ENSGT00940000164462.b	ENSGT00940000155155.k	ENSGT00670000098059.d.b	ENSGT00390000018294.q	ENSGT00390000015355.fb.b	ENSGT00390000006234.v	ENSGT00390000015224.d.i.a	ENSGT00730000111066.a	ENSGT00940000155586.A.f.b.a	ENSGT00940000155527.j.b.a.b	ENSGT00390000011749.n	ENSGT00410000029064.c	ENSGT00390000011749.m	ENSGT00390000000470.m.a	ENSGT00390000005639.a.a.n.a ##22	ENSGT00390000010628.a.a	ENSGT00530000063586.b.c.a.c	ENSGT00940000154372.a.a.b.d	ENSGT00940000154372.a.b.a.e	ENSGT00940000155988.c.e	ENSGT00940000157306.bb	ENSGT00940000158708.a.c	ENSGT00940000158062.f.a.b	ENSGT00940000156892.b.a	ENSGT00940000154617.A.a.a.g	ENSGT00940000154761	ENSGT00940000166168.b	ENSGT00950000183035.b.f.d	ENSGT00940000154889.b	ENSGT00940000159636.e.b
Cyprininae_a	ANCESTRAL SPECIES	48	ENSGT00940000160078.c	ENSGT00940000164462.a	ENSGT00940000155155.l	ENSGT00670000098059.d.a	ENSGT00390000018294.r	ENSGT00390000015355.fb.a	ENSGT00390000006234.u	ENSGT00390000015224.d.i.b	ENSGT00730000111066.b	ENSGT00940000155586.A.f.b.b	ENSGT00940000155527.j.b.a.a	ENSGT00990000203806.a	ENSGT00410000029064.c.a	ENSGT00390000011749.m	ENSGT00390000000470.m.a.a	ENSGT00390000005639.a.a.n.a ##22	ENSGT00390000010628.a.a	ENSGT00530000063586.b.c.a.c	ENSGT00940000154372.a.a.b.d	ENSGT00940000154372.a.b.a.e	ENSGT00940000155988.c.e	ENSGT00940000157306.bb	ENSGT00940000158708.a.c	ENSGT00940000158062.f.a.b	ENSGT00940000156892.b.a	ENSGT00940000154617.A.a.a.g	ENSGT00940000154761	ENSGT00940000166168.b	ENSGT00950000183035.b.f.d	ENSGT00940000154889.b	ENSGT00940000159636.e.b
Common carp reference	MODERN SPECIES	27	CHRNA9 (ENSCCRG00000022278)	rhoh (ENSCCRG00000080203)	n4bp2 (ENSCCRG00000022271)	pds5a (ENSCCRG00000021444)	smim14 (ENSCCRG00000073429)	ube2kb (ENSCCRG00000073522)	ugdh (ENSCCRG00000051328)	lias (ENSCCRG00000078037)	rpl9 (ENSCCRG00000051304)	rfc1 (ENSCCRG00000051229)	ENSCCRG00000006500	ENSCCRG00000025312	smim18 (ENSCCRG00000064068)	gtf2e2 (ENSCCRG00000046595)	QDPR (ENSCCRG00000079710)	ldb2b (ENSCCRG00000072395) ##22	tapt1b (ENSCCRG00000008631)	prom1b (ENSCCRG00000008593)	fgfbp2b (ENSCCRG00000025013)	ENSCCRG00000043514	anxa5b (ENSCCRG00000015853)	uchl1 (ENSCCRG00000076852)	ENSCCRG00000044241	chrna6 (ENSCCRG00000044235)	chrnb3a (ENSCCRG00000023089)	ENSCCRG00000023112	ENSCCRG00000023148	kdm4c (ENSCCRG00000013328)	ENSCCRG00000013340	melk (ENSCCRG00000013347)	pax5 (ENSCCRG00000013356)
Golden-line barbel	MODERN SPECIES	345	rhoh (ENSSGRG00000027585)	n4bp2 (ENSSGRG00000027583)	pds5a (ENSSGRG00000022515)	ube2kb (ENSSGRG00000022408)	smim14 (ENSSGRG00000022406)	ENSSGRG00000022405	rpl9 (ENSSGRG00000022403)	lias (ENSSGRG00000022029)	rfc1 (ENSSGRG00000021184)	ENSSGRG00000021177	ENSSGRG00000021046	ENSSGRG00000021045	smim18 (ENSSGRG00000021044)	gtf2e2 (ENSSGRG00000021002)	QDPR (ENSSGRG00000021001)	ldb2b (ENSSGRG00000021000) ##22	tapt1b (ENSSGRG00000020999)	prom1b (ENSSGRG00000020992)	zmynd10 (ENSSGRG00000020990)	ENSSGRG00000020989	anxa5b (ENSSGRG00000020348)	uchl1 (ENSSGRG00000020340)	ENSSGRG00000020270	chrna6 (ENSSGRG00000020268)	chrnb3a (ENSSGRG00000020267)	ENSSGRG00000020094	DNAH6 (ENSSGRG00000020087)	kdm4c (ENSSGRG00000020027)	ENSSGRG00000020023	melk (ENSSGRG00000019749)	pax5 (ENSSGRG00000019741)
Goldfish	MODERN SPECIES	18	CHRNA9 (ENSCARG00000067245)	rhoh (ENSCARG00000067231)	n4bp2 (ENSCARG00000067215)	pds5a (ENSCARG00000063506)	ube2kb (ENSCARG00000063152)	smim14 (ENSCARG00000063129)	ugdh (ENSCARG00000063108)	lias (ENSCARG00000063079)	rpl9 (ENSCARG00000063053)	rfc1 (ENSCARG00000062345)	ENSCARG00000062117	ADGRL3 (ENSCARG00000054019)	SMIM18 (ENSCARG00000053785)	gtf2e2 (ENSCARG00000053751)	QDPR (ENSCARG00000053337)	ldb2b (ENSCARG00000053284) ##22	tapt1b (ENSCARG00000052960)	prom1b (ENSCARG00000052536)	fgfbp2b (ENSCARG00000052451)	ENSCARG00000052434	anxa5b (ENSCARG00000050409)	uchl1 (ENSCARG00000050215)	ENSCARG00000050181	chrna6 (ENSCARG00000050107)	chrnb3a (ENSCARG00000050064)	ENSCARG00000049956	DNAH6 (ENSCARG00000048724)	kdm4c (ENSCARG00000048396)	ENSCARG00000048343	melk (ENSCARG00000047337)	pax5 (ENSCARG00000047130)
Cyprininae	ANCESTRAL SPECIES	584															ENSGT00390000000470.m.b	ENSGT00390000005639.a.a.n.b ##22	ENSGT00390000010628.a.b	ENSGT00530000063586.b.c.a.d	ENSGT00940000153820.a.c	ENSGT00940000154372.a.a.b.c	ENSGT00940000154372.a.b.a.f	ENSGT00940000155988.c.f	ENSGT00940000157306.cb	ENSGT00940000158708.a.d	ENSGT00940000158062.f.a.a	ENSGT00940000156892.b.b	ENSGT00940000154617.A.a.a.h	ENSGT00940000166168.a	ENSGT00950000183035.b.f.c	ENSGT00940000154889.a	ENSGT00940000159636.e.a
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES		CHRNA9 (ENSCARG00000027798)	rhoh (ENSCARG00000027789)	n4bp2 (ENSCARG00000027721)	pds5a (ENSCARG00000027541)	ube2kb (ENSCARG00000027513)	smim14 (ENSCARG00000027501)	ugdh (ENSCARG00000027366)	lias (ENSCARG00000027319)	rpl9 (ENSCARG00000027281)	rfc1 (ENSCARG00000024417)	ENSCARG00000024272	ENSCARG00000024253	ADGRL3 (ENSCARG00000019085)	gtf2e2 (ENSCARG00000018918)	QDPR (ENSCARG00000018910)	ldb2b (ENSCARG00000018853) ##22	tapt1b (ENSCARG00000018629)	prom1b (ENSCARG00000017683)	zmynd10 (ENSCARG00000017609)	fgfbp2b (ENSCARG00000017601)	ENSCARG00000017591	anxa5b (ENSCARG00000017462)	uchl1 (ENSCARG00000017417)	ENSCARG00000017407	chrna3 (ENSCARG00000017362)	frg1 (ENSCARG00000017342)	asah1b (ENSCARG00000017142)	pcm1 (ENSCARG00000013572)	ENSCARG00000013397	mtmr7b (ENSCARG00000013363)	vps37a (ENSCARG00000013237)
Goldfish	MODERN SPECIES		rhoh (ENSCARG00000024021)	n4bp2 (ENSCARG00000023995)	pds5a (ENSCARG00000021147)	ube2kb (ENSCARG00000020988)	smim14 (ENSCARG00000020976)	ugdh (ENSCARG00000020905)	lias (ENSCARG00000020659)	rpl9 (ENSCARG00000020624)	rfc1 (ENSCARG00000020175)	ENSCARG00000020137	ENSCARG00000062384	ADGRL3 (ENSCARG00000048241)	smim18 (ENSCARG00000047638)	gtf2e2 (ENSCARG00000047612)	QDPR (ENSCARG00000047565)	ldb2b (ENSCARG00000047533) ##22	ENSCARG00000047525	tapt1b (ENSCARG00000047132)	prom1b (ENSCARG00000046930)	zmynd10 (ENSCARG00000046852)	fgfbp2b (ENSCARG00000046844)	ENSCARG00000046842	anxa5b (ENSCARG00000046386)	sh3gl2a (ENSCARG00000046301)	ENSCARG00000046268	ENSCARG00000046222	coro2aa (ENSCARG00000046092)	uso1 (ENSCARG00000042777)	ARHGEF38 (ENSCARG00000042633)	ppa2 (ENSCARG00000042604)	TET2 (ENSCARG00000042569)
Cyprininae_a	ANCESTRAL SPECIES	138	ENSGT00940000164462.b	ENSGT00940000155155.k	ENSGT00670000098059.d.b	ENSGT00390000018294.q	ENSGT00390000015355.fb.b	ENSGT00390000006234.v	ENSGT00390000015224.d.i.a	ENSGT00390000015224.d.j	ENSGT00730000111066.a	ENSGT00940000155586.A.f.b.a	ENSGT00940000155527.j.b.a.b	ENSGT00390000011749.n	ENSGT00410000029064.c.b	ENSGT00390000000470.m.b	ENSGT00390000000470.m.a.b	ENSGT00390000005639.a.a.n.b ##22	ENSGT00390000010628.a.b	ENSGT00530000063586.b.c.a.d	ENSGT00940000153820.a.c	ENSGT00940000154372.a.a.b.c	ENSGT00940000154372.a.b.a.f	ENSGT00940000155988.c.f	ENSGT00940000157306.cb	ENSGT00940000158708.a.d	ENSGT00940000158062.f.a.a	ENSGT00940000156892.b.b	ENSGT00940000154617.A.a.a.h	ENSGT00940000166168.a	ENSGT00950000183035.b.f.c	ENSGT00940000154889.a	ENSGT00940000159636.e.a
Common carp reference	MODERN SPECIES	22	ENSCCRG00000021307	CHRNA9 (ENSCCRG00000021301)	rhoh (ENSCCRG00000078870)	n4bp2 (ENSCCRG00000021294)	pds5a (ENSCCRG00000000702)	ube2kb (ENSCCRG00000071163)	smim14 (ENSCCRG00000076776)	ugdh (ENSCCRG00000078816)	lias (ENSCCRG00000068790)	rpl9 (ENSCCRG00000066350)	rfc1 (ENSCCRG00000051363)	ENSCCRG00000082674	ENSCCRG00000081359	gtf2e2 (ENSCCRG00000025033)	QDPR (ENSCCRG00000046614)	ldb2b (ENSCCRG00000012670) ##22	prom1b (ENSCCRG00000012693)	zmynd10 (ENSCCRG00000008038)	fgfbp2b (ENSCCRG00000081229)	ENSCCRG00000008030	anxa5b (ENSCCRG00000024897)	uchl1 (ENSCCRG00000076047)	ENSCCRG00000046668	chrna6 (ENSCCRG00000046676)	chrnb3a (ENSCCRG00000046691)	ENSCCRG00000007351	kdm4c (ENSCCRG00000021612)	ENSCCRG00000082535	melk (ENSCCRG00000070546)	pax5 (ENSCCRG00000082823)	ENSCCRG00000075970
Golden-line barbel	MODERN SPECIES	827								ENSSGRG00000028026	rpl9 (ENSSGRG00000028027)	rfc1 (ENSSGRG00000028033)	ENSSGRG00000028036	ENSSGRG00000028073	gtf2e2 (ENSSGRG00000029288)	smim18 (ENSSGRG00000029289)	QDPR (ENSSGRG00000029290)	ldb2b (ENSSGRG00000029296) ##22	tapt1b (ENSSGRG00000029485)	prom1b (ENSSGRG00000029488)	zmynd10 (ENSSGRG00000029492)	fgfbp2b (ENSSGRG00000029513)	ENSSGRG00000029514	anxa5b (ENSSGRG00000029527)	uchl1 (ENSSGRG00000031070)	ENSSGRG00000031071	chrna6 (ENSSGRG00000031073)	chrnb3a (ENSSGRG00000031078)	ENSSGRG00000031093
Zebrafish	MODERN SPECIES		n4bp2 (ENSDARG00000061451)	pds5a (ENSDARG00000055022)	ube2kb (ENSDARG00000013505)	smim14 (ENSDARG00000005799)	ugdh (ENSDARG00000019838)	lias (ENSDARG00000022845)	rpl9 (ENSDARG00000037350)	ENSDARG00000116939	rfc1 (ENSDARG00000054799)	ENSDARG00000094677	ADGRL3 (ENSDARG00000061121)	smim18 (ENSDARG00000093064)	gtf2e2 (ENSDARG00000012672)	qdprb.1 (ENSDARG00000037378)	ENSDARG00000116099	ldb2b (ENSDARG00000034896) ##22	tapt1b (ENSDARG00000061143)	prom1b (ENSDARG00000034007)	zmynd10 (ENSDARG00000002406)	fgfbp2b (ENSDARG00000038056)	ENSDARG00000091660	anxa5b (ENSDARG00000016470)	uchl1 (ENSDARG00000026871)	ENSDARG00000115778	chrna6 (ENSDARG00000055559)	ENSDARG00000092275	chrnb3a (ENSDARG00000052764)	ENSDARG00000087224	DNAH6 (ENSDARG00000000606)	kdm4c (ENSDARG00000061504)	ENSDARG00000079074
Euteleosteomorpha	ANCESTRAL SPECIES	149	ENSGT00390000008593.a	ENSGT00940000159253	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00390000012736	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b
Acanthomorphata	ANCESTRAL SPECIES	73	ENSGT01030000234566.e.b.a.a.a.b	ENSGT00390000008593.a	ENSGT00940000159253	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b	ENSGT00950000183135.B.a.b	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002
Euacanthomorphacea	ANCESTRAL SPECIES	10	ENSGT01030000234566.e.b.a.a.a.b	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b	ENSGT00940000166497	ENSGT00940000159651
Pinecone sodierfish	MODERN SPECIES	1	neil3 (ENSMMDG00005020469)	PDGFC (ENSMMDG00005020452)	glrbb (ENSMMDG00005020446)	gria2b (ENSMMDG00005020315)	GASK1B (ENSMMDG00005020311)	tmem144b (ENSMMDG00005020309)	ENSMMDG00005020308	rxfp1 (ENSMMDG00005020305)	etfdh (ENSMMDG00005018801)	ppid (ENSMMDG00005018747)	ENSMMDG00005018742	RAPGEF2 (ENSMMDG00005013633)	fstl5 (ENSMMDG00005013565)	ENSMMDG00005013563	qdpra (ENSMMDG00005013561)	ldb2a (ENSMMDG00005013444) ##22	TAPT1 (ENSMMDG00005013440)	prom1a (ENSMMDG00005013439)	fgfbp2a (ENSMMDG00005013435)	ENSMMDG00005013434	anxa5a (ENSMMDG00005013290)	ccna2 (ENSMMDG00005013287)	ENSMMDG00005013284	thoc3 (ENSMMDG00005013283)	cplx2 (ENSMMDG00005013282)	slc25a48 (ENSMMDG00005013280)	glra1 (ENSMMDG00005013250)	g3bp1 (ENSMMDG00005013234)	sparc (ENSMMDG00005012973)	atox1 (ENSMMDG00005012967)	SLC36A1 (ENSMMDG00005012958)
Percomorphaceae	ANCESTRAL SPECIES	11	ENSGT01030000234566.e.b.a.a.b	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b	ENSGT00940000166497	ENSGT00940000159651
Tiger tail seahorse	MODERN SPECIES	353		ENSHCOG00000008929	PDGFC (ENSHCOG00000008953)	glrbb (ENSHCOG00000008973)	gria2b (ENSHCOG00000009007)	GASK1B (ENSHCOG00000009024)	tmem144b (ENSHCOG00000009030)	rxfp1 (ENSHCOG00000009078)	etfdh (ENSHCOG00000009123)	ppid (ENSHCOG00000009156)	RAPGEF2 (ENSHCOG00000009307)	ENSHCOG00000009332	orai2 (ENSHCOG00000009359)	fstl5 (ENSHCOG00000009492)	qdpra (ENSHCOG00000009525)	ldb2a (ENSHCOG00000009547) ##22	TAPT1 (ENSHCOG00000009580)	prom1a (ENSHCOG00000009634)	ENSHCOG00000009642	anxa5a (ENSHCOG00000009931)	ccna2 (ENSHCOG00000009956)	bbs7 (ENSHCOG00000010044)	tmem33 (ENSHCOG00000010094)	phox2bb (ENSHCOG00000010125)	LIMCH1 (ENSHCOG00000010161)	ENSHCOG00000010185	ctsz (ENSHCOG00000010305)	ENSHCOG00000010320	nanos1 (ENSHCOG00000010326)	dnaaf1 (ENSHCOG00000010341)	ENSHCOG00000010354
Percomorphaceae_B	ANCESTRAL SPECIES	14	ENSGT01030000234566.e.b.a.a.b	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b	ENSGT00940000166497	ENSGT00940000159651
Ovalentaria	ANCESTRAL SPECIES	15	ENSGT01030000234566.e.b.a.a.b	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b	ENSGT00940000166497	ENSGT00940000159651
Ovalentaria_B	ANCESTRAL SPECIES	13	ENSGT01030000234566.e.b.a.a.a.b	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b.r	ENSGT00940000155317.a.b	ENSGT00950000183135.B.a.b	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002
Pomacentridae	ANCESTRAL SPECIES	99	ENSGT01030000234566.e.b.a.a.a.b	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672.mb	ENSGT00940000170113	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00940000178170
Pomacentridae_A	ANCESTRAL SPECIES	20	ENSGT00390000008593.a	ENSGT01030000234566.e.b.a.a.a.b	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672.mb	ENSGT00940000170113	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b
Amphiprion	ANCESTRAL SPECIES	110	ENSGT00390000008593.a	ENSGT01030000234566.e.b.a.a.a.b	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672.mb	ENSGT00940000170113	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b.e
Orange clownfish	MODERN SPECIES	4	aga (ENSAPEG00000001171)	neil3 (ENSAPEG00000001058)	PDGFC (ENSAPEG00000001026)	glrbb (ENSAPEG00000000965)	gria2b (ENSAPEG00000000922)	ENSAPEG00000000872	GASK1B (ENSAPEG00000000864)	ENSAPEG00000000847	rxfp1 (ENSAPEG00000000797)	etfdh (ENSAPEG00000000752)	ppid (ENSAPEG00000000717)	ENSAPEG00000000673	RAPGEF2 (ENSAPEG00000000508)	fstl5 (ENSAPEG00000000433)	qdpra (ENSAPEG00000000377)	ldb2a (ENSAPEG00000000307) ##22	TAPT1 (ENSAPEG00000019221)	SLITRK2 (ENSAPEG00000019167)	ENSAPEG00000019097	ENSAPEG00000019069	rnf130 (ENSAPEG00000019044)	ENSAPEG00000019022	TBC1D9B (ENSAPEG00000018920)	F2RL3 (ENSAPEG00000018898)	ARAP3 (ENSAPEG00000018580)	tgfbi (ENSAPEG00000018521)	ENSAPEG00000018499	exosc3 (ENSAPEG00000018485)	b4galt1l (ENSAPEG00000018474)	rest (ENSAPEG00000018458)	noa1 (ENSAPEG00000018447)
Clown anemonefish	MODERN SPECIES	8														fstl5 (ENSAOCG00000024584)	qdpra (ENSAOCG00000024579)	ldb2a (ENSAOCG00000024573) ##22	TAPT1 (ENSAOCG00000024563)
Spiny chromis	MODERN SPECIES	480														fstl5 (ENSAPOG00000022840)	qdpra (ENSAPOG00000022869)	ldb2a (ENSAPOG00000022920) ##22	TAPT1 (ENSAPOG00000023013)
Bicolor damselfish	MODERN SPECIES	1659																ldb2a (ENSSPAG00000003212) ##22	TAPT1 (ENSSPAG00000003273)	ENSSPAG00000003325
Cichlidae	ANCESTRAL SPECIES	8	ENSGT01030000234566.e.b.a.a.a.b	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b.r	ENSGT00940000155317.a.b	ENSGT00950000183135.B.a.b	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002
Pseudocrenilabrinae	ANCESTRAL SPECIES	27	ENSGT01030000234566.e.b.a.a.a.b	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b.r	ENSGT00940000155317.a.b	ENSGT00950000183135.B.a.b	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	31	ENSGT01030000234566.e.b.a.a.a.b	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b.r	ENSGT00940000155317.a.b	ENSGT00950000183135.B.a.b	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002
Haplochromini	ANCESTRAL SPECIES	25	ENSGT01030000234566.e.b.a.a.a.b	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b.r	ENSGT00940000155317.a.b	ENSGT00950000183135.B.a.b	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002
Burton s mouthbrooder	MODERN SPECIES	299	TENM3 (ENSHBUG00000023849)	neil3 (ENSHBUG00000023848)	aga (ENSHBUG00000023847)	PDGFC (ENSHBUG00000023846)	glrbb (ENSHBUG00000023845)	gria2b (ENSHBUG00000023844)	GASK1B (ENSHBUG00000023843)	tmem144b (ENSHBUG00000023842)	rxfp1 (ENSHBUG00000023841)	etfdh (ENSHBUG00000023840)	ppid (ENSHBUG00000000002)	ENSHBUG00000001191	RAPGEF2 (ENSHBUG00000001192)	fstl5 (ENSHBUG00000001193)	qdpra (ENSHBUG00000001194)	ldb2a (ENSHBUG00000001195) ##22	TAPT1 (ENSHBUG00000001196)	ENSHBUG00000000003
Haplochromini_A	ANCESTRAL SPECIES	28	ENSGT01030000234566.e.b.a.a.a.b	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b.r	ENSGT00940000155317.a.b	ENSGT00950000183135.B.a.b	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002
P. nyererei	MODERN SPECIES	315	ENSPNYG00000021236	aga (ENSPNYG00000021250)	neil3 (ENSPNYG00000021276)	PDGFC (ENSPNYG00000021293)	glrbb (ENSPNYG00000021306)	gria2b (ENSPNYG00000021331)	GASK1B (ENSPNYG00000021355)	tmem144b (ENSPNYG00000021375)	rxfp1 (ENSPNYG00000021393)	etfdh (ENSPNYG00000021424)	ppid (ENSPNYG00000021450)	ENSPNYG00000021463	RAPGEF2 (ENSPNYG00000021497)	fstl5 (ENSPNYG00000000677)	qdpra (ENSPNYG00000000729)	ldb2a (ENSPNYG00000000755) ##22	TAPT1 (ENSPNYG00000000787)	prom1a (ENSPNYG00000000823)	fgfbp2a (ENSPNYG00000000907)	FGFBP1 (ENSPNYG00000000927)	anxa5a (ENSPNYG00000000939)	ccna2 (ENSPNYG00000001054)	bbs7 (ENSPNYG00000001093)	tmem33 (ENSPNYG00000001141)	phox2bb (ENSPNYG00000001177)	ENSPNYG00000001215	ENSPNYG00000001240	ENSPNYG00000001281	nanos1 (ENSPNYG00000001325)	lbx2 (ENSPNYG00000001372)	pcgf1 (ENSPNYG00000001378)
Haplochromini_B	ANCESTRAL SPECIES	45	ENSGT01030000234566.e.b.a.a.a.b	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b.r	ENSGT00940000155317.a.b	ENSGT00950000183135.B.a.b	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002
Zebra mbuna	MODERN SPECIES	1102	TENM3 (ENSMZEG00005001505)	aga (ENSMZEG00005001642)	neil3 (ENSMZEG00005001680)	PDGFC (ENSMZEG00005001715)	glrbb (ENSMZEG00005001726)	gria2b (ENSMZEG00005001754)	GASK1B (ENSMZEG00005001806)	TMEM144 (ENSMZEG00005001829)	rxfp1 (ENSMZEG00005001865)	etfdh (ENSMZEG00005001927)	ppid (ENSMZEG00005001987)	ENSMZEG00005002016	RAPGEF2 (ENSMZEG00005002059)	fstl5 (ENSMZEG00005002191)	qdpra (ENSMZEG00005002244)	ldb2a (ENSMZEG00005002272) ##22	TAPT1 (ENSMZEG00005002312)	prom1a (ENSMZEG00005002355)	fgfbp2a (ENSMZEG00005002458)	FGFBP1 (ENSMZEG00005002471)	anxa5a (ENSMZEG00005002493)	ccna2 (ENSMZEG00005002532)	bbs7 (ENSMZEG00005002574)	tmem33 (ENSMZEG00005002633)	phox2bb (ENSMZEG00005002657)	LIMCH1 (ENSMZEG00005002675)	ENSMZEG00005002711	nanos1 (ENSMZEG00005002722)	lbx2 (ENSMZEG00005002756)	pcgf1 (ENSMZEG00005002774)	fgf24 (ENSMZEG00005002819)
Eastern happy	MODERN SPECIES	11	glrbb (ENSACLG00000011452)	gria2b (ENSACLG00000011481)	GASK1B (ENSACLG00000011514)	tmem144b (ENSACLG00000011517)	ENSACLG00000011531	ENSACLG00000011533	rxfp1 (ENSACLG00000011704)	etfdh (ENSACLG00000011803)	ppid (ENSACLG00000011877)	ENSACLG00000011944	RAPGEF2 (ENSACLG00000011994)	ENSACLG00000012354	ENSACLG00000012369	fstl5 (ENSACLG00000012483)	qdpra (ENSACLG00000012578)	ldb2a (ENSACLG00000012598) ##22	TAPT1 (ENSACLG00000012655)	prom1a (ENSACLG00000012734)	fgfbp2a (ENSACLG00000013013)	FGFBP1 (ENSACLG00000013018)	anxa5a (ENSACLG00000013020)	ccna2 (ENSACLG00000013032)	bbs7 (ENSACLG00000013055)	tmem33 (ENSACLG00000013064)	phox2bb (ENSACLG00000013362)	LIMCH1 (ENSACLG00000013368)	ENSACLG00000013472	nanos1 (ENSACLG00000013474)	lbx2 (ENSACLG00000013753)	pcgf1 (ENSACLG00000013756)	fgf24 (ENSACLG00000013791)
Lyretail cichlid	MODERN SPECIES	348	TENM3 (ENSNBRG00000013104)	ENSNBRG00000013179	aga (ENSNBRG00000013189)	neil3 (ENSNBRG00000013229)	glrbb (ENSNBRG00000013272)	gria2b (ENSNBRG00000013291)	GASK1B (ENSNBRG00000013329)	tmem144b (ENSNBRG00000013347)	rxfp1 (ENSNBRG00000013400)	etfdh (ENSNBRG00000013426)	ppid (ENSNBRG00000013459)	ENSNBRG00000013543	RAPGEF2 (ENSNBRG00000013553)	fstl5 (ENSNBRG00000013597)	qdpra (ENSNBRG00000013631)	ldb2a (ENSNBRG00000013658) ##22	TAPT1 (ENSNBRG00000013674)	prom1a (ENSNBRG00000013716)	fgfbp2a (ENSNBRG00000013763)	FGFBP1 (ENSNBRG00000013772)	anxa5a (ENSNBRG00000013787)	ccna2 (ENSNBRG00000013847)	bbs7 (ENSNBRG00000013875)	tmem33 (ENSNBRG00000013931)	phox2bb (ENSNBRG00000013959)	ENSNBRG00000013975	ENSNBRG00000013986	ENSNBRG00000013997	nanos1 (ENSNBRG00000014018)	lbx2 (ENSNBRG00000014077)	pcgf1 (ENSNBRG00000014093)
Nile tilapia	MODERN SPECIES	11	PDGFC (ENSONIG00000001182)	glrbb (ENSONIG00000001184)	gria2b (ENSONIG00000001193)	ENSONIG00000012073	ENSONIG00000041434	GASK1B (ENSONIG00000027888)	tmem144b (ENSONIG00000001224)	rxfp1 (ENSONIG00000001237)	etfdh (ENSONIG00000001247)	ppid (ENSONIG00000001255)	ENSONIG00000035090	RAPGEF2 (ENSONIG00000001266)	fstl5 (ENSONIG00000001287)	ENSONIG00000035449	qdpra (ENSONIG00000001296)	ldb2a (ENSONIG00000001301) ##22	TAPT1 (ENSONIG00000001302)	prom1a (ENSONIG00000001308)	fgfbp2a (ENSONIG00000001325)	FGFBP1 (ENSONIG00000020950)	anxa5a (ENSONIG00000001327)	ccna2 (ENSONIG00000001338)	bbs7 (ENSONIG00000001354)	tmem33 (ENSONIG00000001363)	phox2bb (ENSONIG00000001369)	LIMCH1 (ENSONIG00000001371)	ENSONIG00000032026	lbx2 (ENSONIG00000040386)	pcgf1 (ENSONIG00000001378)	fgf24 (ENSONIG00000001385)	npm1b (ENSONIG00000001397)
Midas cichlid	MODERN SPECIES	1085													fstl5 (ENSACIG00000017506)	ENSACIG00000017531	qdpra (ENSACIG00000017538)	ldb2a (ENSACIG00000017551) ##22	TAPT1 (ENSACIG00000017571)	prom1a (ENSACIG00000017637)	fgfbp2a (ENSACIG00000018129)	FGFBP1 (ENSACIG00000018138)	anxa5a (ENSACIG00000018207)	ccna2 (ENSACIG00000018789)	bbs7 (ENSACIG00000018877)	tmem33 (ENSACIG00000018904)	phox2bb (ENSACIG00000018923)	ENSACIG00000018949	ENSACIG00000019005	nanos1 (ENSACIG00000019022)	lbx2 (ENSACIG00000019040)	pcgf1 (ENSACIG00000019051)	fgf24 (ENSACIG00000019068)
Atherinomorphae	ANCESTRAL SPECIES	9	ENSGT01030000234566.e.b.a.a.b	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002
Oryzias	ANCESTRAL SPECIES	37	ENSGT01030000234566.e.b.a.a.a.b	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b.m	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00940000156418	ENSGT00940000156495.n	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00950000183135.B.a.b	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405
Oryzias_b	ANCESTRAL SPECIES	23	ENSGT01030000234566.e.b.a.a.a.b	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b.m	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00940000156418	ENSGT00940000156495.n	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00950000183135.B.a.b	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405
Javanese ricefish	MODERN SPECIES	1	aga (ENSOJAG00000010436)	neil3 (ENSOJAG00000010420)	PDGFC (ENSOJAG00000010412)	glrbb (ENSOJAG00000010388)	gria2b (ENSOJAG00000008694)	GASK1B (ENSOJAG00000008504)	tmem144b (ENSOJAG00000008328)	rxfp1 (ENSOJAG00000008307)	etfdh (ENSOJAG00000007385)	ppid (ENSOJAG00000007286)	ENSOJAG00000007253	RAPGEF2 (ENSOJAG00000005890)	fstl5 (ENSOJAG00000009566)	ENSOJAG00000009507	qdpra (ENSOJAG00000009495)	ldb2a (ENSOJAG00000009447) ##22	TAPT1 (ENSOJAG00000009153)	prom1a (ENSOJAG00000007018)	fgfbp2a (ENSOJAG00000006768)	ENSOJAG00000006761	anxa5a (ENSOJAG00000006663)	bbs7 (ENSOJAG00000006324)	tmem33 (ENSOJAG00000006285)	phox2bb (ENSOJAG00000006262)	ENSOJAG00000006197	nanos1 (ENSOJAG00000006186)	lbx2 (ENSOJAG00000006164)	pcgf1 (ENSOJAG00000006122)	ENSOJAG00000006072	fgf24 (ENSOJAG00000006025)	npm1b (ENSOJAG00000006012)
Indian medaka	MODERN SPECIES	8	cav4a (ENSOMEG00000002292)	OXTR (ENSOMEG00000002296)	SRGAP3 (ENSOMEG00000002321)	ptgis (ENSOMEG00000002353)	KCNB1 (ENSOMEG00000002372)	ENSOMEG00000002378	stau1 (ENSOMEG00000002388)	pbrm1l (ENSOMEG00000002483)	CAMK1 (ENSOMEG00000002510)	ENSOMEG00000002521	cfap20dc (ENSOMEG00000002553)	olfch1 (ENSOMEG00000002634)	fstl5 (ENSOMEG00000002696)	qdpra (ENSOMEG00000002713)	ENSOMEG00000002719	ldb2a (ENSOMEG00000002731) ##22	prom1a (ENSOMEG00000002864)	fgfbp2a (ENSOMEG00000002916)	anxa5a (ENSOMEG00000002931)	ENSOMEG00000002942	ccna2 (ENSOMEG00000002951)	bbs7 (ENSOMEG00000002989)	tmem33 (ENSOMEG00000003014)	phox2bb (ENSOMEG00000003025)	LIMCH1 (ENSOMEG00000003079)	nanos1 (ENSOMEG00000003107)	lbx2 (ENSOMEG00000003113)	pcgf1 (ENSOMEG00000003141)	ENSOMEG00000003153	ENSOMEG00000003166	ENSOMEG00000003185
Oryzias_a	ANCESTRAL SPECIES	90	ENSGT01030000234566.e.b.a.a.b	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b.m	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00940000156418	ENSGT00940000156495.n	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b
Japanese Medaka HdrR	MODERN SPECIES	1	ENSORLG00000026262	ENSORLG00000020235	ENSORLG00000024624	rxfp1 (ENSORLG00000020233)	etfdh (ENSORLG00000020221)	ENSORLG00000023736	ppid (ENSORLG00000020206)	ENSORLG00000030394	RAPGEF2 (ENSORLG00000020186)	ENSORLG00000030064	ENSORLG00000027431	fstl5 (ENSORLG00000023813)	ENSORLG00000029202	qdpra (ENSORLG00000028052)	ENSORLG00000025731	ldb2a (ENSORLG00000020101) ##22	TAPT1 (ENSORLG00000022406)	ENSORLG00000023790	prom1a (ENSORLG00000020095)	ENSORLG00000027631	anxa5a (ENSORLG00000020086)	ccna2 (ENSORLG00000020079)	bbs7 (ENSORLG00000020070)	tmem33 (ENSORLG00000020060)	ENSORLG00000023715	phox2bb (ENSORLG00000020052)	LIMCH1 (ENSORLG00000020038)	ENSORLG00000028906
Chinese medaka	DUPLICATION
Chinese medaka	MODERN SPECIES	4843																ldb2a (ENSOSIG00000002653) ##22
Chinese medaka	MODERN SPECIES	786														fstl5 (ENSOSIG00000020324)	qdpra (ENSOSIG00000020498)	ENSOSIG00000020501 ##22	TAPT1 (ENSOSIG00000020511)	prom1a (ENSOSIG00000020546)	fgfbp2a (ENSOSIG00000020559)	FGFBP1 (ENSOSIG00000020561)	anxa5a (ENSOSIG00000000782)	ccna2 (ENSOSIG00000001202)	bbs7 (ENSOSIG00000001207)	tmem33 (ENSOSIG00000001250)	phox2bb (ENSOSIG00000001251)	ENSOSIG00000001252	ENSOSIG00000001256
Cyprinodontiformes	ANCESTRAL SPECIES	8	ENSGT01030000234566.e.b.a.a.b	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002
Aplocheiloidei	ANCESTRAL SPECIES	13	ENSGT01030000234566.e.b.a.a.a.b	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405
Mangrove rivulus	MODERN SPECIES	40	TENM3 (ENSKMAG00000009989)	aga (ENSKMAG00000009945)	neil3 (ENSKMAG00000009895)	PDGFC (ENSKMAG00000009846)	glrbb (ENSKMAG00000009806)	gria2b (ENSKMAG00000009709)	GASK1B (ENSKMAG00000009673)	tmem144b (ENSKMAG00000009652)	rxfp1 (ENSKMAG00000009585)	etfdh (ENSKMAG00000009509)	ppid (ENSKMAG00000009456)	ENSKMAG00000009434	RAPGEF2 (ENSKMAG00000009377)	fstl5 (ENSKMAG00000009295)	qdpra (ENSKMAG00000009235)	ldb2a (ENSKMAG00000009177) ##22	TAPT1 (ENSKMAG00000009089)	prom1a (ENSKMAG00000008901)	ENSKMAG00000008840	anxa5a (ENSKMAG00000008817)	ccna2 (ENSKMAG00000008797)	bbs7 (ENSKMAG00000008717)	tmem33 (ENSKMAG00000008662)	phox2bb (ENSKMAG00000008645)	LIMCH1 (ENSKMAG00000008557)	ctsz (ENSKMAG00000008511)	nanos1 (ENSKMAG00000008477)	ENSKMAG00000008455	lbx2 (ENSKMAG00000008434)	pcgf1 (ENSKMAG00000008357)	fgf24 (ENSKMAG00000008285)
Turquoise killifish	MODERN SPECIES	1610	tmem144b (ENSNFUG00015001156)	ENSNFUG00015001173	ENSNFUG00015001176	ENSNFUG00015001179	rxfp1 (ENSNFUG00015001185)	ENSNFUG00015001192	ENSNFUG00015001195	ETFDH (ENSNFUG00015001228)	ENSNFUG00015001301	PPID (ENSNFUG00015001305)	ENSNFUG00015001307	RAPGEF2 (ENSNFUG00015001328)	fstl5 (ENSNFUG00015001522)	ENSNFUG00015001759	QDPRA (ENSNFUG00015001764)	ldb2a (ENSNFUG00015001789) ##22	TAPT1 (ENSNFUG00015001874)	PROM1A (ENSNFUG00015002070)	ENSNFUG00015002281	CCNA2 (ENSNFUG00015002286)	fgfbp2a (ENSNFUG00015002300)	ENSNFUG00015002302	ANXA5A (ENSNFUG00015002322)	bbs7 (ENSNFUG00015002409)	tmem33 (ENSNFUG00015002439)	phox2bb (ENSNFUG00015002444)	LIMCH1 (ENSNFUG00015002450)	ctsz (ENSNFUG00015002469)	NANOS1A (ENSNFUG00015002473)	ENSNFUG00015002475	lbx2 (ENSNFUG00015002476)
Cyprinodontoidei	ANCESTRAL SPECIES	23	ENSGT01030000234566.e.b.a.a.b	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002
Poeciliinae	ANCESTRAL SPECIES	11	ENSGT01030000234566.e.b.a.a.a.b	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00940000156418.i	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b.u	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002
Poecilia	ANCESTRAL SPECIES	43	ENSGT00390000008593.a	ENSGT01030000234566.e.b.a.a.a.b	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000156418.i	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b.u	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002
NAME_6	ANCESTRAL SPECIES	88	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00940000156418.j	ENSGT00940000156418.i	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b.u	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002
Amazon molly	MODERN SPECIES	291	tdo2a (ENSPFOG00000018977)	TENM3 (ENSPFOG00000018910)	aga (ENSPFOG00000018876)	neil3 (ENSPFOG00000018858)	PDGFC (ENSPFOG00000018847)	glrbb (ENSPFOG00000018789)	gria2b (ENSPFOG00000023447)	GASK1B (ENSPFOG00000018773)	tmem144b (ENSPFOG00000018755)	rxfp1 (ENSPFOG00000024296)	etfdh (ENSPFOG00000018734)	ppid (ENSPFOG00000018717)	RAPGEF2 (ENSPFOG00000018669)	fstl5 (ENSPFOG00000018610)	qdpra (ENSPFOG00000018572)	ldb2a (ENSPFOG00000018565) ##22	TAPT1 (ENSPFOG00000018551)	prom1a (ENSPFOG00000018506)	fgfbp2a (ENSPFOG00000018472)	ENSPFOG00000020534	anxa5a (ENSPFOG00000018455)	ccna2 (ENSPFOG00000018447)	bbs7 (ENSPFOG00000018430)	tmem33 (ENSPFOG00000018408)	phox2bb (ENSPFOG00000018404)	LIMCH1 (ENSPFOG00000018384)	ENSPFOG00000022273	ctsz (ENSPFOG00000018377)	nanos1 (ENSPFOG00000020533)	lbx2 (ENSPFOG00000018375)	pcgf1 (ENSPFOG00000018369)
Sailfin molly	MODERN SPECIES	258														fstl5 (ENSPLAG00000005426)	qdpra (ENSPLAG00000000101)	ldb2a (ENSPLAG00000005476) ##22	TAPT1 (ENSPLAG00000005530)
Guppy	MODERN SPECIES	440	TENM3 (ENSPREG00000009983)	ENSPREG00000009955	aga (ENSPREG00000009915)	neil3 (ENSPREG00000009841)	PDGFC (ENSPREG00000009823)	glrbb (ENSPREG00000009802)	gria2b (ENSPREG00000008420)	GASK1B (ENSPREG00000008163)	tmem144b (ENSPREG00000008061)	rxfp1 (ENSPREG00000007967)	etfdh (ENSPREG00000007929)	ppid (ENSPREG00000007885)	RAPGEF2 (ENSPREG00000007668)	fstl5 (ENSPREG00000007568)	qdpra (ENSPREG00000007514)	ldb2a (ENSPREG00000007490) ##22	TAPT1 (ENSPREG00000007416)	prom1a (ENSPREG00000007237)	FGFBP1 (ENSPREG00000007194)	anxa5a (ENSPREG00000007171)	ccna2 (ENSPREG00000007160)	bbs7 (ENSPREG00000007058)	tmem33 (ENSPREG00000007019)	phox2bb (ENSPREG00000006998)	ENSPREG00000006982	ENSPREG00000006962	ctsz (ENSPREG00000006931)	nanos1 (ENSPREG00000006901)	lbx2 (ENSPREG00000006878)	pcgf1 (ENSPREG00000006831)	fgf24 (ENSPREG00000006807)
Platyfish	MODERN SPECIES	15	TENM3 (ENSXMAG00000002241)	aga (ENSXMAG00000002238)	neil3 (ENSXMAG00000028638)	PDGFC (ENSXMAG00000002233)	glrbb (ENSXMAG00000002229)	gria2b (ENSXMAG00000002202)	GASK1B (ENSXMAG00000002199)	tmem144b (ENSXMAG00000002191)	rxfp1 (ENSXMAG00000002186)	etfdh (ENSXMAG00000002176)	ppid (ENSXMAG00000002165)	ENSXMAG00000002164	RAPGEF2 (ENSXMAG00000002141)	fstl5 (ENSXMAG00000002127)	qdpra (ENSXMAG00000027800)	ldb2a (ENSXMAG00000025031) ##22	TAPT1 (ENSXMAG00000002104)	prom1a (ENSXMAG00000002075)	fgfbp2a (ENSXMAG00000020069)	ENSXMAG00000020068	anxa5a (ENSXMAG00000002063)	ccna2 (ENSXMAG00000002057)	bbs7 (ENSXMAG00000002045)	tmem33 (ENSXMAG00000002033)	phox2bb (ENSXMAG00000022004)	LIMCH1 (ENSXMAG00000002013)	ctsz (ENSXMAG00000002006)	nanos1 (ENSXMAG00000024788)	lbx2 (ENSXMAG00000023338)	pcgf1 (ENSXMAG00000001994)	fgf24 (ENSXMAG00000001991)
NAME_4	ANCESTRAL SPECIES	23	ENSGT01030000234566.e.b.a.a.b	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002
Mummichog	MODERN SPECIES	2280							rxfp1 (ENSFHEG00000018720)	etfdh (ENSFHEG00000018761)	ppid (ENSFHEG00000018792)	ENSFHEG00000018808	RAPGEF2 (ENSFHEG00000019143)	fstl5 (ENSFHEG00000019210)	qdpra (ENSFHEG00000019251)	ENSFHEG00000019273	ENSFHEG00000019295	ldb2a (ENSFHEG00000019335) ##22	TAPT1 (ENSFHEG00000019387)	prom1a (ENSFHEG00000019858)	fgfbp2a (ENSFHEG00000019879)	ENSFHEG00000019892	anxa5a (ENSFHEG00000020501)	ccna2 (ENSFHEG00000020527)	bbs7 (ENSFHEG00000020539)	tmem33 (ENSFHEG00000020568)	phox2bb (ENSFHEG00000020583)	LIMCH1 (ENSFHEG00000020645)	ctsz (ENSFHEG00000020684)	nanos1 (ENSFHEG00000020713)	lbx2 (ENSFHEG00000020722)	pcgf1 (ENSFHEG00000020761)	fgf24 (ENSFHEG00000020790)
Sheepshead minnow	DUPLICATION
Sheepshead minnow	MODERN SPECIES	354																ldb2a (ENSCVAG00000013945) ##22	TAPT1 (ENSCVAG00000013872)	prom1a (ENSCVAG00000013849)	fgfbp2a (ENSCVAG00000013640)	ENSCVAG00000013630	anxa5a (ENSCVAG00000013616)	ccna2 (ENSCVAG00000013540)	bbs7 (ENSCVAG00000013522)	tmem33 (ENSCVAG00000013465)	phox2bb (ENSCVAG00000013444)	LIMCH1 (ENSCVAG00000013432)	ctsz (ENSCVAG00000013372)	nanos1 (ENSCVAG00000013105)	lbx2 (ENSCVAG00000013082)	pcgf1 (ENSCVAG00000013076)	fgf24 (ENSCVAG00000013040)
Sheepshead minnow	MODERN SPECIES	1394															qdpra (ENSCVAG00000001433)	ldb2a (ENSCVAG00000001412) ##22
Percomorphaceae_C	ANCESTRAL SPECIES	16	ENSGT01030000234566.e.b.a.a.a.b	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b	ENSGT00940000166497	ENSGT00940000159651
Percomorphaceae_D	ANCESTRAL SPECIES	17	ENSGT01030000234566.e.b.a.a.a.b	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b	ENSGT00940000166497	ENSGT00940000159651
Anabantaria	ANCESTRAL SPECIES	15	ENSGT01030000234566.e.b.a.a.a.b	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b	ENSGT00940000166497	ENSGT00940000159651
Zig-zag eel	MODERN SPECIES	1	aga (ENSMAMG00000017060)	ENSMAMG00000004401	neil3 (ENSMAMG00000017052)	glrbb (ENSMAMG00000016990)	GRIA2 (ENSMAMG00000016971)	GASK1B (ENSMAMG00000016951)	TMEM144 (ENSMAMG00000016904)	rxfp1 (ENSMAMG00000016828)	etfdh (ENSMAMG00000016784)	ppid (ENSMAMG00000016746)	ENSMAMG00000016738	RAPGEF2 (ENSMAMG00000016541)	ENSMAMG00000026550	FSTL5 (ENSMAMG00000016494)	qdpra (ENSMAMG00000016334)	ldb2a (ENSMAMG00000016290) ##22	TAPT1 (ENSMAMG00000016214)	prom1a (ENSMAMG00000016090)	FGFBP1 (ENSMAMG00000016060)	anxa5a (ENSMAMG00000015911)	CCNA2 (ENSMAMG00000015888)	BBS7 (ENSMAMG00000015828)	TMEM33 (ENSMAMG00000015795)	ENSMAMG00000015788	LIMCH1 (ENSMAMG00000015744)	ENSMAMG00000015711	ENSMAMG00000015692	nanos1 (ENSMAMG00000028036)	lbx2 (ENSMAMG00000015453)	pcgf1 (ENSMAMG00000015424)	fgf24 (ENSMAMG00000028535)
Anabantoidei	ANCESTRAL SPECIES	11	ENSGT01030000234566.e.b.a.a.a.b	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002
Climbing perch	MODERN SPECIES	1	TENM3 (ENSATEG00000004042)	aga (ENSATEG00000004160)	neil3 (ENSATEG00000004193)	PDGFC (ENSATEG00000004260)	glrbb (ENSATEG00000004300)	gria2b (ENSATEG00000004338)	GASK1B (ENSATEG00000004414)	TMEM144 (ENSATEG00000004427)	rxfp1 (ENSATEG00000004637)	etfdh (ENSATEG00000004806)	ppid (ENSATEG00000004812)	ENSATEG00000004859	RAPGEF2 (ENSATEG00000004899)	FSTL5 (ENSATEG00000005067)	qdpra (ENSATEG00000029489)	ldb2a (ENSATEG00000005156) ##22	TAPT1 (ENSATEG00000005194)	prom1a (ENSATEG00000005258)	fgfbp2a (ENSATEG00000026124)	FGFBP1 (ENSATEG00000005567)	anxa5a (ENSATEG00000005587)	CCNA2 (ENSATEG00000005793)	BBS7 (ENSATEG00000005807)	TMEM33 (ENSATEG00000005934)	ENSATEG00000005964	LIMCH1 (ENSATEG00000005984)	ENSATEG00000006043	ENSATEG00000006070	nanos1 (ENSATEG00000006118)	lbx2 (ENSATEG00000006173)	pcgf1 (ENSATEG00000006177)
Siamese fighting fish	MODERN SPECIES	1	TENM3 (ENSBSLG00000019618)	aga (ENSBSLG00000020207)	neil3 (ENSBSLG00000020215)	PDGFC (ENSBSLG00000020943)	glrbb (ENSBSLG00000021085)	gria2b (ENSBSLG00000021351)	GASK1B (ENSBSLG00000022303)	tmem144b (ENSBSLG00000022304)	rxfp1 (ENSBSLG00000022382)	etfdh (ENSBSLG00000022581)	ppid (ENSBSLG00000022928)	ENSBSLG00000022957	RAPGEF2 (ENSBSLG00000023154)	fstl5 (ENSBSLG00000024573)	qdpra (ENSBSLG00000024697)	ldb2a (ENSBSLG00000006580) ##22	TAPT1 (ENSBSLG00000007016)	prom1a (ENSBSLG00000007945)	fgfbp2a (ENSBSLG00000008790)	FGFBP1 (ENSBSLG00000008796)	anxa5a (ENSBSLG00000008797)	ccna2 (ENSBSLG00000008806)	bbs7 (ENSBSLG00000008815)	tmem33 (ENSBSLG00000008839)	phox2bb (ENSBSLG00000008910)	LIMCH1 (ENSBSLG00000009007)	nanos1 (ENSBSLG00000009293)	ctsz (ENSBSLG00000009300)	lbx2 (ENSBSLG00000009334)	pcgf1 (ENSBSLG00000009347)	fgf24 (ENSBSLG00000009366)
Carangaria	ANCESTRAL SPECIES	15	ENSGT01030000234566.e.b.a.a.a.b	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b	ENSGT00940000166497	ENSGT00940000159651
Pleuronectoidei	ANCESTRAL SPECIES	19	ENSGT01030000234566.e.b.a.a.a.b	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b	ENSGT00940000166497	ENSGT00940000159651
Tongue sole	MODERN SPECIES	6	TENM3 (ENSCSEG00000003703)	aga (ENSCSEG00000003818)	neil3 (ENSCSEG00000003828)	PDGFC (ENSCSEG00000003834)	glrbb (ENSCSEG00000003840)	gria2b (ENSCSEG00000003847)	GASK1B (ENSCSEG00000003865)	tmem144b (ENSCSEG00000003870)	rxfp1 (ENSCSEG00000003882)	etfdh (ENSCSEG00000003898)	ppid (ENSCSEG00000003908)	ENSCSEG00000003918	RAPGEF2 (ENSCSEG00000004346)	fstl5 (ENSCSEG00000004431)	qdpra (ENSCSEG00000004448)	ldb2a (ENSCSEG00000004456) ##22	TAPT1 (ENSCSEG00000004468)	prom1a (ENSCSEG00000004478)	ENSCSEG00000004494	spry1 (ENSCSEG00000004498)	SPATA5 (ENSCSEG00000004499)	nudt6 (ENSCSEG00000004505)	fgf2 (ENSCSEG00000004508)	BBS12 (ENSCSEG00000004509)	ENSCSEG00000004511	ENSCSEG00000004512	adad1 (ENSCSEG00000004516)	ENSCSEG00000004521	ENSCSEG00000004526 #37	npm1b (ENSCSEG00000004530)	fgf24 (ENSCSEG00000004534)
Turbot	MODERN SPECIES	4	TENM3 (ENSSMAG00000009729)	aga (ENSSMAG00000009654)	neil3 (ENSSMAG00000009621)	glrbb (ENSSMAG00000009536)	PDGFC (ENSSMAG00000009590)	gria2b (ENSSMAG00000009501)	GASK1B (ENSSMAG00000009498)	TMEM144 (ENSSMAG00000009487)	rxfp1 (ENSSMAG00000009444)	etfdh (ENSSMAG00000009400)	ppid (ENSSMAG00000009341)	ENSSMAG00000025465	RAPGEF2 (ENSSMAG00000008911)	FSTL5 (ENSSMAG00000008858)	qdpra (ENSSMAG00000008823)	ldb2a (ENSSMAG00000008806) ##22	TAPT1 (ENSSMAG00000008743)	prom1a (ENSSMAG00000008631)	fgfbp2a (ENSSMAG00000008609)	ENSSMAG00000008603	anxa5a (ENSSMAG00000008545)	CCNA2 (ENSSMAG00000008532)	BBS7 (ENSSMAG00000008476)	TMEM33 (ENSSMAG00000008440)	ENSSMAG00000022063	ENSSMAG00000008200	ENSSMAG00000008166	ENSSMAG00000008160	nanos1 (ENSSMAG00000028442)	lbx2 (ENSSMAG00000008154)	pcgf1 (ENSSMAG00000008128)
Carangaria_A	ANCESTRAL SPECIES	17	ENSGT01030000234566.e.b.a.a.a.b	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b	ENSGT00940000166497	ENSGT00940000159651
Seriola	ANCESTRAL SPECIES	31	ENSGT00390000003288	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000159747	ENSGT00940000153899.a.a	ENSGT00980000198740	ENSGT00940000158129	ENSGT00950000182938.b.b.a	ENSGT00940000159354	ENSGT00940000159047.d	ENSGT00390000011365.a	ENSGT00510000046787.e.b	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b	ENSGT00940000166497	ENSGT00940000159651
Yellowtail amberjack	MODERN SPECIES	2793														fstl5 (ENSSLDG00000003425)	qdpra (ENSSLDG00000003373)	ldb2a (ENSSLDG00000003303) ##22	TAPT1 (ENSSLDG00000003203)	prom1a (ENSSLDG00000003088)	fgfbp2a (ENSSLDG00000003066)	ENSSLDG00000003040
Greater amberjack	MODERN SPECIES	113		tmed9 (ENSSDUG00000009010)	tmem216 (ENSSDUG00000008999)	TMED9 (ENSSDUG00000008984)	ENSSDUG00000008946	thoc3 (ENSSDUG00000008924)	cplx2 (ENSSDUG00000008912)	slc25a48 (ENSSDUG00000008876)	glra1 (ENSSDUG00000008848)	g3bp1 (ENSSDUG00000008796)	sparc (ENSSDUG00000008774)	RAPGEF2 (ENSSDUG00000008556)	ENSSDUG00000008521	fstl5 (ENSSDUG00000008435)	qdpra (ENSSDUG00000008398)	ldb2a (ENSSDUG00000008359) ##22	TAPT1 (ENSSDUG00000008283)	prom1a (ENSSDUG00000008149)	fgfbp2a (ENSSDUG00000008124)	anxa5a (ENSSDUG00000008109)	ccna2 (ENSSDUG00000008091)	bbs7 (ENSSDUG00000008052)	tmem33 (ENSSDUG00000008030)	phox2bb (ENSSDUG00000008009)	ENSSDUG00000007997	ENSSDUG00000007963	ENSSDUG00000007959	ctsz (ENSSDUG00000007940)	nanos1 (ENSSDUG00000007879)	ENSSDUG00000007863	lbx2 (ENSSDUG00000007835)
Barramundi perch	MODERN SPECIES	398														fstl5 (ENSLCAG00010007626)	qdpra (ENSLCAG00010007633)	ldb2a (ENSLCAG00010007636) ##22	TAPT1 (ENSLCAG00010007679)
Eupercaria	ANCESTRAL SPECIES	12	ENSGT01030000234566.e.b.a.a.a.b	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b	ENSGT00940000166497	ENSGT00940000159651
Tetraodontidae	ANCESTRAL SPECIES	9	ENSGT00940000159253	ENSGT00390000008593.a	ENSGT01030000234566.e.b.a.a.a.b	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a.f	ENSGT00420000029769.b	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b	ENSGT00950000183135.B.a.b	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002	ENSGT00940000164405
Tetraodon	MODERN SPECIES	14	CTSO (ENSTNIG00000013029)	tdo2a (ENSTNIG00000013030)	TENM3 (ENSTNIG00000013031)	aga (ENSTNIG00000013032)	neil3 (ENSTNIG00000013033)	PDGFC (ENSTNIG00000013034)	glrbb (ENSTNIG00000013035)	gria2b (ENSTNIG00000013036)	GASK1B (ENSTNIG00000013037)	rxfp1 (ENSTNIG00000013038)	etfdh (ENSTNIG00000013039)	ppid (ENSTNIG00000013040)	RAPGEF2 (ENSTNIG00000013041)	fstl5 (ENSTNIG00000013042)	qdpra (ENSTNIG00000013043)	ldb2a (ENSTNIG00000013044) ##22	TAPT1 (ENSTNIG00000013045)	prom1a (ENSTNIG00000013046)	anxa5a (ENSTNIG00000013047)	ccna2 (ENSTNIG00000013048)	bbs7 (ENSTNIG00000013049)	tmem33 (ENSTNIG00000013050)	phox2bb (ENSTNIG00000013051)	LIMCH1 (ENSTNIG00000013052)	ctsz (ENSTNIG00000013053)	lbx2 (ENSTNIG00000013054)	pcgf1 (ENSTNIG00000013055)	fgf24 (ENSTNIG00000013056)	npm1b (ENSTNIG00000013057)	tlx2 (ENSTNIG00000013058)	adad1 (ENSTNIG00000013059)
Fugu	MODERN SPECIES	5	asb5a (ENSTRUG00000015664)	tdo2a (ENSTRUG00000015711)	TENM3 (ENSTRUG00000015740)	aga (ENSTRUG00000015862)	neil3 (ENSTRUG00000015875)	PDGFC (ENSTRUG00000015892)	glrbb (ENSTRUG00000015901)	gria2b (ENSTRUG00000015959)	GASK1B (ENSTRUG00000016120)	rxfp1 (ENSTRUG00000016132)	etfdh (ENSTRUG00000016171)	ppid (ENSTRUG00000016203)	RAPGEF2 (ENSTRUG00000004171)	fstl5 (ENSTRUG00000005344)	qdpra (ENSTRUG00000005706)	ldb2a (ENSTRUG00000019730) ##22	TAPT1 (ENSTRUG00000006181)	prom1a (ENSTRUG00000006388)	ENSTRUG00000006847	anxa5a (ENSTRUG00000006853)	ccna2 (ENSTRUG00000007066)	bbs7 (ENSTRUG00000007380)	tmem33 (ENSTRUG00000007428)	phox2bb (ENSTRUG00000007442)	LIMCH1 (ENSTRUG00000007537)	ENSTRUG00000007731	ENSTRUG00000030013	nanos1 (ENSTRUG00000021804)	lbx2 (ENSTRUG00000025486)	pcgf1 (ENSTRUG00000007881)	fgf24 (ENSTRUG00000008042)
Eupecaria_A	ANCESTRAL SPECIES	13	ENSGT01030000234566.e.b.a.a.a.b	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b	ENSGT00940000166497	ENSGT00940000159651
Ballan wrasse	MODERN SPECIES	310														fstl5 (ENSLBEG00000022258)	qdpra (ENSLBEG00000022365)	ldb2a (ENSLBEG00000022414) ##22	TAPT1 (ENSLBEG00000022503)	prom1a (ENSLBEG00000022659)	ENSLBEG00000022880	anxa5a (ENSLBEG00000023054)
Eupecaria_B	ANCESTRAL SPECIES	13	ENSGT01030000234566.e.b.a.a.a.b	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b	ENSGT00940000166497	ENSGT00940000159651
Perciformes	ANCESTRAL SPECIES	13	ENSGT01030000234566.e.b.a.a.a.b	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b	ENSGT00940000166497	ENSGT00940000159651
Cottioidei	ANCESTRAL SPECIES	9	ENSGT00390000008593.a	ENSGT01030000234566.e.b.a.a.a.b	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b	ENSGT00950000183135.B.a.b	ENSGT00940000166497	ENSGT00940000159651	ENSGT00940000167002
Lumpfish	MODERN SPECIES	1	TENM3 (ENSCLMG00005008027)	aga (ENSCLMG00005009266)	neil3 (ENSCLMG00005009270)	PDGFC (ENSCLMG00005009271)	glrbb (ENSCLMG00005009272)	gria2b (ENSCLMG00005009278)	GASK1B (ENSCLMG00005009436)	TMEM144 (ENSCLMG00005009437)	rxfp1 (ENSCLMG00005009438)	etfdh (ENSCLMG00005009445)	ppid (ENSCLMG00005012149)	ENSCLMG00005012151	RAPGEF2 (ENSCLMG00005012153)	fstl5 (ENSCLMG00005012162)	qdpra (ENSCLMG00005012191)	ldb2a (ENSCLMG00005012196) ##22	TAPT1 (ENSCLMG00005012201)	prom1a (ENSCLMG00005012610)	fgfbp2a (ENSCLMG00005012611)	FGFBP1 (ENSCLMG00005012612)	anxa5a (ENSCLMG00005012615)	ccna2 (ENSCLMG00005012694)	bbs7 (ENSCLMG00005012695)	tmem33 (ENSCLMG00005012707)	phox2bb (ENSCLMG00005012708)	ENSCLMG00005012709	ENSCLMG00005012710	ENSCLMG00005012712	nanos1 (ENSCLMG00005012714)	ENSCLMG00005012716	lbx2 (ENSCLMG00005012718)
Stickleback	MODERN SPECIES	3	tdo2a (ENSGACG00000016513)	TENM3 (ENSGACG00000016524)	aga (ENSGACG00000016536)	neil3 (ENSGACG00000016544)	PDGFC (ENSGACG00000016550)	glrbb (ENSGACG00000016556)	gria2b (ENSGACG00000016558)	GASK1B (ENSGACG00000016571)	tmem144b (ENSGACG00000016577)	rxfp1 (ENSGACG00000016581)	etfdh (ENSGACG00000016587)	ppid (ENSGACG00000016609)	RAPGEF2 (ENSGACG00000016624)	fstl5 (ENSGACG00000016634)	qdpra (ENSGACG00000016641)	ldb2a (ENSGACG00000016642) ##22	TAPT1 (ENSGACG00000016645)	prom1a (ENSGACG00000016649)	ENSGACG00000016652	ENSGACG00000016656	anxa5a (ENSGACG00000016658)	ENSGACG00000016664	ccna2 (ENSGACG00000016665)	bbs7 (ENSGACG00000016673)	tmem33 (ENSGACG00000016676)	phox2bb (ENSGACG00000016683)	LIMCH1 (ENSGACG00000016686)	ENSGACG00000016689	ENSGACG00000016691	nanos1 (ENSGACG00000016692)	lbx2 (ENSGACG00000016693)
Perciformes_a	ANCESTRAL SPECIES	11	ENSGT01030000234566.e.b.a.a.a.b	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b	ENSGT00940000166497	ENSGT00940000159651
Channel bull blenny	MODERN SPECIES	1	aga (ENSCGOG00000004955)	neil3 (ENSCGOG00000004946)	PDGFC (ENSCGOG00000004943)	glrbb (ENSCGOG00000004734)	gria2b (ENSCGOG00000003705)	GASK1B (ENSCGOG00000003661)	tmem144b (ENSCGOG00000003625)	rxfp1 (ENSCGOG00000003622)	etfdh (ENSCGOG00000002875)	ppid (ENSCGOG00000002571)	ENSCGOG00000002568	ENSCGOG00000002567	RAPGEF2 (ENSCGOG00000001162)	fstl5 (ENSCGOG00000001019)	qdpra (ENSCGOG00000000998)	ldb2a (ENSCGOG00000011797) ##22	TAPT1 (ENSCGOG00000011790)	prom1a (ENSCGOG00000011701)	fgfbp2a (ENSCGOG00000011692)	FGFBP1 (ENSCGOG00000011689)	anxa5a (ENSCGOG00000011681)	ccna2 (ENSCGOG00000011664)	bbs7 (ENSCGOG00000011337)	tmem33 (ENSCGOG00000011306)	phox2bb (ENSCGOG00000011304)	LIMCH1 (ENSCGOG00000011277)	ENSCGOG00000011270	nanos1 (ENSCGOG00000011266)	lbx2 (ENSCGOG00000011264)	pcgf1 (ENSCGOG00000011259)	fgf24 (ENSCGOG00000011246)
Pike perch	MODERN SPECIES	32							ENSSLUG00000002926	rxfp1 (ENSSLUG00000002944)	etfdh (ENSSLUG00000003145)	ppid (ENSSLUG00000003972)	ENSSLUG00000003977	RAPGEF2 (ENSSLUG00000004024)	fstl5 (ENSSLUG00000004393)	ENSSLUG00000004466	qdpra (ENSSLUG00000004487)	ldb2a (ENSSLUG00000004503) ##22	TAPT1 (ENSSLUG00000004584)	prom1a (ENSSLUG00000005400)	fgfbp2a (ENSSLUG00000006531)	ENSSLUG00000006536	anxa5a (ENSSLUG00000006554)	ccna2 (ENSSLUG00000006726)	bbs7 (ENSSLUG00000006751)	tmem33 (ENSSLUG00000006805)	phox2bb (ENSSLUG00000006850)	ENSSLUG00000006860	ENSSLUG00000006866	ENSSLUG00000006873	ENSSLUG00000006880	CTSZ (ENSSLUG00000006890)	nanos1 (ENSSLUG00000006984)
Eupecaria_C	ANCESTRAL SPECIES	12	ENSGT01030000234566.e.b.a.a.a.b	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b	ENSGT00940000166497	ENSGT00940000159651
Gilthead seabream	MODERN SPECIES	9	TENM3 (ENSSAUG00010003162)	aga (ENSSAUG00010009967)	neil3 (ENSSAUG00010009974)	PDGFC (ENSSAUG00010009978)	glrbb (ENSSAUG00010009989)	gria2b (ENSSAUG00010010055)	GASK1B (ENSSAUG00010011123)	tmem144b (ENSSAUG00010011124)	rxfp1 (ENSSAUG00010011135)	etfdh (ENSSAUG00010011157)	ppid (ENSSAUG00010012224)	ENSSAUG00010012226	RAPGEF2 (ENSSAUG00010012251)	fstl5 (ENSSAUG00010012500)	qdpra (ENSSAUG00010014008)	ldb2a (ENSSAUG00010014013) ##22	TAPT1 (ENSSAUG00010014049)	prom1a (ENSSAUG00010014320)	fgfbp2a (ENSSAUG00010014479)	FGFBP1 (ENSSAUG00010014480)	anxa5a (ENSSAUG00010014484)	ccna2 (ENSSAUG00010014495)	bbs7 (ENSSAUG00010014501)	tmem33 (ENSSAUG00010014552)	ENSSAUG00010014570	phox2bb (ENSSAUG00010014573)	LIMCH1 (ENSSAUG00010014577)	ENSSAUG00010014595	ENSSAUG00010014598	ctsz (ENSSAUG00010014606)	nanos1 (ENSSAUG00010014612)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	39	ENSGT01030000234566.e.b.a.a.a.b	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000158645	ENSGT00940000156344.b	ENSGT00940000156950.a	ENSGT00420000029769.b	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000155317.a.b	ENSGT00940000155569.a.a.f	ENSGT00950000183135.B.a.b	ENSGT00940000166497	ENSGT00940000159651
European seabass	MODERN SPECIES	12	ENSDLAG00005026738	TENM3 (ENSDLAG00005022486)	ENSDLAG00005027331	aga (ENSDLAG00005022447)	neil3 (ENSDLAG00005022434)	PDGFC (ENSDLAG00005022429)	GRIA2 (ENSDLAG00005020548)	GASK1B (ENSDLAG00005020469)	TMEM144 (ENSDLAG00005020459)	rxfp1 (ENSDLAG00005020439)	etfdh (ENSDLAG00005019524)	ppid (ENSDLAG00005028391)	RAPGEF2 (ENSDLAG00005015387)	FSTL5 (ENSDLAG00005014297)	qdpra (ENSDLAG00005014238)	ldb2a (ENSDLAG00005014165) ##22	TAPT1 (ENSDLAG00005013767)	prom1a (ENSDLAG00005011795)	fgfbp2a (ENSDLAG00005011747)	FGFBP1 (ENSDLAG00005027041)	anxa5a (ENSDLAG00005011468)	CCNA2 (ENSDLAG00005011439)	BBS7 (ENSDLAG00005011350)	ENSDLAG00005011311	ENSDLAG00005011011	ENSDLAG00005011029	ENSDLAG00005011006	nanos1 (ENSDLAG00005010999)	lbx2 (ENSDLAG00005032899)	pcgf1 (ENSDLAG00005010940)	fgf24 (ENSDLAG00005010916)
Large yellow croaker	MODERN SPECIES	479	ENSLCRG00005011612	ENSLCRG00005012071	ENSLCRG00005012072	nudt18 (ENSLCRG00005012073)	ENSLCRG00005012074	ENSLCRG00005012076	si:ch211-191j22.3 (ENSLCRG00005012077)	ercc6l (ENSLCRG00005012078)	rxfp1 (ENSLCRG00005012079)	etfdh (ENSLCRG00005012084)	ppid (ENSLCRG00005012129)	RAPGEF2 (ENSLCRG00005012132)	ENSLCRG00005012163	fstl5 (ENSLCRG00005012169)	qdpra (ENSLCRG00005012893)	ldb2a (ENSLCRG00005012896) ##22	TAPT1 (ENSLCRG00005012909)	prom1a (ENSLCRG00005013631)	fgfbp2a (ENSLCRG00005015215)	FGFBP1 (ENSLCRG00005015216)	anxa5a (ENSLCRG00005015222)	ccna2 (ENSLCRG00005015239)	bbs7 (ENSLCRG00005015244)	tmem33 (ENSLCRG00005015248)	phox2bb (ENSLCRG00005015251)	LIMCH1 (ENSLCRG00005015259)	ENSLCRG00005015287	ENSLCRG00005015288	ENSLCRG00005015289	ENSLCRG00005000271	tbcela (ENSLCRG00005000526)
Protacanthopterygii	ANCESTRAL SPECIES	71					ENSGT00940000156344.a	ENSGT00940000156950.b.c	ENSGT00390000012574	ENSGT00940000158241	ENSGT00390000010773	ENSGT00940000154672	ENSGT00940000170113	ENSGT00390000012736	ENSGT00940000156418	ENSGT00940000156495	ENSGT00390000000470.n	ENSGT00390000005639.a.a ##22	ENSGT00390000010628.b	ENSGT00530000063586.b.c.b	ENSGT00940000154372.a.a.a	ENSGT00940000154372.a.b.b	ENSGT00940000155988.d	ENSGT00940000155372	ENSGT00390000012346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a.v.b	ENSGT00940000161041	ENSGT00910000144269	ENSGT00730000114722	ENSGT00550000074935	ENSGT00940000162460.s
Northern pike	MODERN SPECIES	3	ENSELUG00000021182	ENSELUG00000021198	pmt (ENSELUG00000021169)	MID2 (ENSELUG00000021095)	TSC22D3 (ENSELUG00000020930)	PCDH11Y (ENSELUG00000020901)	ENSELUG00000032791	klhl4 (ENSELUG00000000116)	AHNAK (ENSELUG00000034471)	eef1g (ENSELUG00000003429)	polr2g (ENSELUG00000003401)	ENSELUG00000003380	dctn4 (ENSELUG00000003352)	fstl5 (ENSELUG00000003294)	qdpra (ENSELUG00000003249)	ldb2a (ENSELUG00000003229) ##22	TAPT1 (ENSELUG00000003205)	prom1a (ENSELUG00000003139)	fgfbp2a (ENSELUG00000003052)	ENSELUG00000000091	anxa5a (ENSELUG00000003008)	ccna2 (ENSELUG00000002896)	bbs7 (ENSELUG00000002880)	tmem33 (ENSELUG00000002853)	ENSELUG00000002843	phox2bb (ENSELUG00000024615)	LIMCH1 (ENSELUG00000024591)	kctd8 (ENSELUG00000031922)	ENSELUG00000025414	PIGG (ENSELUG00000019371)	ENSELUG00000027633
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	34	ENSGT01030000234566.e.b.a.a.a.b.h	ENSGT00390000008593.a.e	ENSGT00940000158645.f	ENSGT00940000156344.b.b	ENSGT00940000156950.a.p	ENSGT00940000156950.b.c	ENSGT00390000012574	ENSGT00940000158241.h.b	ENSGT00390000010773.e.a	ENSGT00940000154672.jb	ENSGT00940000170113	ENSGT00390000012736	ENSGT00940000156418.g	ENSGT00940000156495.l	ENSGT00390000000470.n.d	ENSGT00390000005639.a.a.s.a ##22	ENSGT00390000010628.b.d.a	ENSGT00530000063586.b.c.b.d	ENSGT00940000154372.a.a.a.c	ENSGT00940000154372.a.b.b.b	ENSGT00940000155988.d.e	ENSGT00940000155372.s	ENSGT00390000011368.c.a	ENSGT00940000159958.f	ENSGT00950000183159.a.v.b.d
Salmoninae_a	ANCESTRAL SPECIES	40	ENSGT00390000006915.d.j.b.a	ENSGT00940000165522.a.e	ENSGT01030000234566.e.b.a.a.a.b.h	ENSGT00390000008593.a.e	ENSGT00940000158645.f	ENSGT00940000156344.b.b	ENSGT00940000156950.a.p	ENSGT00390000012574	ENSGT00940000158241.h.b	ENSGT00390000010773.e.a	ENSGT00940000154672.jb	ENSGT00390000012736	ENSGT00940000156418.g	ENSGT00940000156495.l	ENSGT00390000000470.n.d	ENSGT00390000005639.a.a.s.a ##22	ENSGT00390000010628.b.d.a	ENSGT00530000063586.b.c.b.d	ENSGT00940000154372.a.a.a.c	ENSGT00940000154372.a.b.b.b	ENSGT00940000155988.d.e	ENSGT00940000155372.s	ENSGT00390000011368.c.a	ENSGT00940000159958.f	ENSGT00950000183159.a.v.b.d	ENSGT00940000161041.g	ENSGT00910000144269.n	ENSGT00730000114722	ENSGT00550000074935.f	ENSGT00940000162460.s.c	ENSGT00940000162460.t.a
Oncorhynchus	ANCESTRAL SPECIES	39	ENSGT00390000006915.d.j.b.a	ENSGT00940000165522.a.e	ENSGT01030000234566.e.b.a.a.a.b.h	ENSGT00390000008593.a.e	ENSGT00940000158645.f	ENSGT00940000156344.b.b	ENSGT00940000156950.a.p	ENSGT00390000012574.`b	ENSGT00940000158241.h.b	ENSGT00390000010773.e.a	ENSGT00940000154672.jb	ENSGT00390000012736	ENSGT00940000156418.g	ENSGT00940000156495.l	ENSGT00390000000470.n.d	ENSGT00390000005639.a.a.s.a ##22	ENSGT00390000010628.b.d.a	ENSGT00530000063586.b.c.b.d	ENSGT00940000154372.a.a.a.c	ENSGT00940000154372.a.b.b.b	ENSGT00940000155988.d.e	ENSGT00940000155372.s	ENSGT00390000012346.b	ENSGT00390000011368.c.a	ENSGT00940000159958.f	ENSGT00950000183159.a.v.b.d	ENSGT00940000161041.g	ENSGT00910000144269.n	ENSGT00550000074935.f	ENSGT00940000162460.s.c	ENSGT00940000162460.t.a
Rainbow trout	MODERN SPECIES	23	PDGFC (ENSOMYG00000042952)	GLRB (ENSOMYG00000056278)	gria2b (ENSOMYG00000043010)	ENSOMYG00000069658	ENSOMYG00000053408	TMEM144 (ENSOMYG00000043312)	rxfp1 (ENSOMYG00000043350)	etfdh (ENSOMYG00000043549)	ppid (ENSOMYG00000044467)	C4orf45 (ENSOMYG00000044484)	RAPGEF2 (ENSOMYG00000044534)	FSTL5 (ENSOMYG00000044699)	qdpra (ENSOMYG00000045221)	ENSOMYG00000076556	ENSOMYG00000068631	ldb2a (ENSOMYG00000060327) ##22	TAPT1 (ENSOMYG00000045263)	prom1a (ENSOMYG00000045284)	fgfbp2a (ENSOMYG00000045341)	ENSOMYG00000045345	anxa5a (ENSOMYG00000045371)	CCNA2 (ENSOMYG00000045562)	BBS7 (ENSOMYG00000045572)	TMEM33 (ENSOMYG00000045586)	ENSOMYG00000045594	ENSOMYG00000055442	LIMCH1 (ENSOMYG00000045622)	ENSOMYG00000045684	ENSOMYG00000045695	fnta (ENSOMYG00000045716)	ENSOMYG00000045733
Oncorhynchus_a	ANCESTRAL SPECIES	40	ENSGT00390000006915.d.j.b.a	ENSGT00940000165522.a.e	ENSGT01030000234566.e.b.a.a.a.b.h	ENSGT00390000008593.a.e	ENSGT00940000158645.f	ENSGT00940000156344.b.b	ENSGT00940000156950.a.p	ENSGT00390000012574.`b	ENSGT00940000158241.h.b	ENSGT00390000010773.e.a	ENSGT00940000154672.jb	ENSGT00390000012736	ENSGT00940000156418.g	ENSGT00940000156495.l	ENSGT00390000000470.n.d	ENSGT00390000005639.a.a.s.a ##22	ENSGT00390000010628.b.d.a	ENSGT00530000063586.b.c.b.d	ENSGT00940000154372.a.a.a.c	ENSGT00940000154372.a.b.b.b	ENSGT00940000155988.d.e	ENSGT00940000155372.s	ENSGT00390000011368.c.a	ENSGT00940000159958.f	ENSGT00950000183159.a.v.b.d	ENSGT00940000161041.g	ENSGT00910000144269.n	ENSGT00550000074935.f	ENSGT00940000162460.s.c	ENSGT00940000162460.t.a	ENSGT01060000248588.a.c.b.h
Chinook salmon	MODERN SPECIES	32	egf (ENSOTSG00005044598)	lrit3a (ENSOTSG00005044681)	gpm6aa (ENSOTSG00005044682)	asb5a (ENSOTSG00005044732)	ENSOTSG00005044737	PDGFC (ENSOTSG00005044909)	glrbb (ENSOTSG00005044910)	gria2b (ENSOTSG00005044922)	tmem144b (ENSOTSG00005045320)	rxfp1 (ENSOTSG00005045321)	etfdh (ENSOTSG00005045322)	ppid (ENSOTSG00005045687)	C4orf45 (ENSOTSG00005045688)	fstl5 (ENSOTSG00005045696)	qdpra (ENSOTSG00005045960)	ldb2a (ENSOTSG00005045961) ##22	prom1a (ENSOTSG00005045975)	fgfbp2a (ENSOTSG00005045985)	ENSOTSG00005045986	anxa5a (ENSOTSG00005045994)	ccna2 (ENSOTSG00005046216)	tmem33 (ENSOTSG00005046218)	phox2bb (ENSOTSG00005046219)	LIMCH1 (ENSOTSG00005046220)	kctd8 (ENSOTSG00005046224)	PIGG (ENSOTSG00005046227)	fnta (ENSOTSG00005046234)	GSTP1 (ENSOTSG00005046238)	ENSOTSG00005046241	trpc3 (ENSOTSG00005046251)	zdhhc9 (ENSOTSG00005046456)
Coho salmon	MODERN SPECIES	6	gpm6aa (ENSOKIG00005006056)	asb5a (ENSOKIG00005006217)	TENM3 (ENSOKIG00005006535)	TDO2 (ENSOKIG00005012563)	PDGFC (ENSOKIG00005012637)	GLRB (ENSOKIG00005012646)	gria2b (ENSOKIG00005012709)	tmem144b (ENSOKIG00005013540)	rxfp1 (ENSOKIG00005013599)	etfdh (ENSOKIG00005013749)	ppid (ENSOKIG00005015764)	C4orf45 (ENSOKIG00005015839)	RAPGEF2 (ENSOKIG00005016029)	fstl5 (ENSOKIG00005020505)	qdpra (ENSOKIG00005022426)	ldb2a (ENSOKIG00005022435) ##22	TAPT1 (ENSOKIG00005022478)	prom1a (ENSOKIG00005023138)	fgfbp2a (ENSOKIG00005023814)	ENSOKIG00005023845	anxa5a (ENSOKIG00005023924)	CCNA2 (ENSOKIG00005024932)	tmem33 (ENSOKIG00005025095)	PHOX2B (ENSOKIG00005025189)	LIMCH1 (ENSOKIG00005025242)	KCTD8 (ENSOKIG00005025594)	ENSOKIG00005025616	PIGG (ENSOKIG00005025635)	FNTA (ENSOKIG00005025762)	GSTP1 (ENSOKIG00005025843)	ENSOKIG00005025921
Salmo	ANCESTRAL SPECIES	43	ENSGT00390000006915.d.j.b.a	ENSGT00940000165522.a.e	ENSGT01030000234566.e.b.a.a.a.b.h	ENSGT00390000008593.a.e	ENSGT00940000158645.f	ENSGT00940000156344.b.b	ENSGT00940000156950.a.p	ENSGT00390000012574	ENSGT00940000158241.h.b	ENSGT00390000010773.e.a	ENSGT00940000154672.jb	ENSGT00390000012736	ENSGT00940000156418.g	ENSGT00940000156495.l	ENSGT00390000000470.n.d	ENSGT00390000005639.a.a.s.a ##22	ENSGT00390000010628.b.d.a	ENSGT00530000063586.b.c.b.d	ENSGT00940000154372.a.a.a.c	ENSGT00940000154372.a.b.b.b	ENSGT00940000155988.d.e	ENSGT00940000155372.s	ENSGT00390000011368.c.a	ENSGT00940000159958.f	ENSGT00950000183159.a.v.b.d	ENSGT00940000161041.g	ENSGT00910000144269.n	ENSGT00730000114722	ENSGT00550000074935.f	ENSGT00940000162460.s.c	ENSGT00940000162460.t.a
Atlantic salmon	MODERN SPECIES	28	dmb (ENSSSAG00000103423)	asb5a (ENSSSAG00000074584)	ENSSSAG00000070557	ENSSSAG00000070365	PDGFC (ENSSSAG00000070360)	gria2b (ENSSSAG00000055905)	TMEM144 (ENSSSAG00000055605)	rxfp1 (ENSSSAG00000055549)	ETFD (ENSSSAG00000053698)	ppid (ENSSSAG00000053651)	cssa09h4orf45 (ENSSSAG00000053641)	RAPGEF2 (ENSSSAG00000040144)	FSTL5 (ENSSSAG00000046488)	ENSSSAG00000109846	qdpra (ENSSSAG00000046325)	ldb2a (ENSSSAG00000119197) ##22	TAPT1 (ENSSSAG00000045662)	prom1a (ENSSSAG00000005067)	fgfbp2a (ENSSSAG00000027653)	fgfp1 (ENSSSAG00000095949)	anxa5a (ENSSSAG00000018761)	ENSSSAG00000114868	TMM33 (ENSSSAG00000017268)	ENSSSAG00000087053	LIMCH1 (ENSSSAG00000016068)	ENSSSAG00000015945	ENSSSAG00000015779	ENSSSAG00000089265	ENSSSAG00000015654	GSTP1 (ENSSSAG00000015608)	GSTP1 (ENSSSAG00000015545)
River trout	MODERN SPECIES	4	ENSSTUG00000023048	ENSSTUG00000023042	TENM3 (ENSSTUG00000017931)	tdo2a (ENSSTUG00000017576)	PDGFC (ENSSTUG00000017565)	glrbb (ENSSTUG00000017524)	gria2b (ENSSTUG00000017349)	tmem144b (ENSSTUG00000017329)	rxfp1 (ENSSTUG00000017290)	etfdh (ENSSTUG00000015364)	ppid (ENSSTUG00000015265)	C4orf45 (ENSSTUG00000015245)	RAPGEF2 (ENSSTUG00000009412)	fstl5 (ENSSTUG00000008641)	qdpra (ENSSTUG00000008618)	ldb2a (ENSSTUG00000008561) ##22	TAPT1 (ENSSTUG00000007755)	prom1a (ENSSTUG00000005900)	fgfbp2a (ENSSTUG00000005822)	ENSSTUG00000005817	anxa5a (ENSSTUG00000005367)	ccna2 (ENSSTUG00000005315)	tmem33 (ENSSTUG00000005292)	phox2bb (ENSSTUG00000005284)	LIMCH1 (ENSSTUG00000004721)	kctd8 (ENSSTUG00000004668)	PIGG (ENSSTUG00000004654)	ENSSTUG00000004648	fnta (ENSSTUG00000004574)	GSTP1 (ENSSTUG00000004519)	ENSSTUG00000004465
Huchen	MODERN SPECIES	113							tmem144b (ENSHHUG00000029409)	ENSHHUG00000029405	ENSHHUG00000029401	etfdh (ENSHHUG00000029379)	ppid (ENSHHUG00000029365)	ENSHHUG00000029355	RAPGEF2 (ENSHHUG00000028843)	fstl5 (ENSHHUG00000028715)	qdpra (ENSHHUG00000028714)	ldb2a (ENSHHUG00000028700) ##22	TAPT1 (ENSHHUG00000028666)	prom1a (ENSHHUG00000028375)	fgfbp2a (ENSHHUG00000028355)	ENSHHUG00000028353	anxa5a (ENSHHUG00000028346)
Salmoninae	ANCESTRAL SPECIES	291	ENSGT00950000183045.C	ENSGT01030000234566.e.b.a.a.a.b.g	ENSGT00390000008593.a.f	ENSGT00940000159253	ENSGT00940000158645.e	ENSGT00940000156344.b.a	ENSGT00940000156950.a.o	ENSGT00420000029769.b	ENSGT00940000158241.h.a	ENSGT00390000010773.e.b	ENSGT00940000154672.kb	ENSGT01100000264986	ENSGT00940000156418.h	ENSGT00940000156495.k	ENSGT00390000000470.n.c	ENSGT00390000005639.a.a.s.b ##22	ENSGT00390000010628.b.d.b	ENSGT00530000063586.b.c.b.c	ENSGT00940000154372.a.a.a.d	ENSGT00940000154372.a.b.b.a	ENSGT00940000155988.d.f	ENSGT00940000155372.t	ENSGT00390000012346	ENSGT00390000011368.c.b	ENSGT00940000159958.e	ENSGT00950000183159.a.v.b.c	ENSGT00940000161041.h	ENSGT00910000144269.m
Salmoninae_a	ANCESTRAL SPECIES	18	ENSGT00950000183045.C	ENSGT01030000234566.e.b.a.a.a.b.g	ENSGT00390000008593.a.f	ENSGT00940000159253	ENSGT00940000158645.e	ENSGT00940000156344.b.a	ENSGT00940000156950.a.o	ENSGT00420000029769.b	ENSGT00940000158241.h.a	ENSGT00390000010773.e.b	ENSGT00940000154672.kb	ENSGT01100000264986	ENSGT00940000156418.h	ENSGT00940000156495.k	ENSGT00390000000470.n.c	ENSGT00390000005639.a.a.s.b ##22	ENSGT00390000010628.b.d.b	ENSGT00530000063586.b.c.b.c	ENSGT00940000154372.a.a.a.d	ENSGT00940000154372.a.b.b.a	ENSGT00940000155988.d.f	ENSGT00940000155372.t	ENSGT00390000012346	ENSGT00390000011368.c.b	ENSGT00940000159958.e	ENSGT00950000183159.a.v.b.c	ENSGT00940000161041.h	ENSGT00910000144269.m	ENSGT00550000074935.e	ENSGT00940000163435	ENSGT01000000220458
Salmo	ANCESTRAL SPECIES	24	ENSGT00940000153230.A	ENSGT00950000183045.C	ENSGT01030000234566.e.b.a.a.a.b.g	ENSGT00390000008593.a.f	ENSGT00940000159253	ENSGT00940000158645.e	ENSGT00940000156344.b.a	ENSGT00940000156950.a.o	ENSGT00420000029769.b	ENSGT00940000158241.h.a	ENSGT00390000010773.e.b	ENSGT00940000154672.kb	ENSGT00940000156418.h	ENSGT00940000156495.k	ENSGT00390000000470.n.c	ENSGT00390000005639.a.a.s.b ##22	ENSGT00390000010628.b.d.b	ENSGT00530000063586.b.c.b.c	ENSGT00940000154372.a.a.a.d	ENSGT00940000154372.a.b.b.a	ENSGT00940000155988.d.f	ENSGT00940000155372.t	ENSGT00390000012346	ENSGT00390000011368.c.b	ENSGT00940000159958.e	ENSGT00950000183159.a.v.b.c	ENSGT00940000161041.h	ENSGT00910000144269.m	ENSGT00550000074935.e	ENSGT00940000163435	ENSGT01000000220458
River trout	MODERN SPECIES	22	TENM3 (ENSSTUG00000032439)	tdo2a (ENSSTUG00000032068)	CTSO (ENSSTUG00000032053)	PDGFC (ENSSTUG00000032041)	glrbb (ENSSTUG00000032009)	gria2b (ENSSTUG00000029830)	GASK1B (ENSSTUG00000029767)	rbx1 (ENSSTUG00000029754)	rxfp1 (ENSSTUG00000029617)	etfdh (ENSSTUG00000027385)	ppid (ENSSTUG00000027312)	ENSSTUG00000027302	ENSSTUG00000026704	fstl5 (ENSSTUG00000025305)	qdpra (ENSSTUG00000025246)	ldb2a (ENSSTUG00000025146) ##22	TAPT1 (ENSSTUG00000024461)	ENSSTUG00000024427	prom1a (ENSSTUG00000022887)	fgfbp2a (ENSSTUG00000022828)	ENSSTUG00000022821	ENSSTUG00000022813	anxa5a (ENSSTUG00000022635)	bbs7 (ENSSTUG00000022532)	tmem33 (ENSSTUG00000022519)	ENSSTUG00000022507	phox2bb (ENSSTUG00000022498)	LIMCH1 (ENSSTUG00000022378)	kctd8 (ENSSTUG00000022366)	PIGG (ENSSTUG00000021813)	fnta (ENSSTUG00000021675)
Atlantic salmon	MODERN SPECIES	24	neil3 (ENSSSAG00000074568)	aga (ENSSSAG00000074561)	TENM3 (ENSSSAG00000074527)	tdo2a (ENSSSAG00000074427)	CTSO (ENSSSAG00000074413)	PDGFC (ENSSSAG00000103393)	glrb (ENSSSAG00000074389)	gria2b (ENSSSAG00000063801)	GASK1B (ENSSSAG00000063469)	rxfp1 (ENSSSAG00000063369)	etfdh (ENSSSAG00000063306)	ppid (ENSSSAG00000063293)	RAPGEF2 (ENSSSAG00000051519)	FSTL5 (ENSSSAG00000016231)	qdpra (ENSSSAG00000099292)	ldb2a (ENSSSAG00000015658) ##22	TAPT1 (ENSSSAG00000010043)	prom1a (ENSSSAG00000030439)	fgfbp2a (ENSSSAG00000004720)	ENSSSAG00000004717	anxa5a (ENSSSAG00000004122)	ccna2 (ENSSSAG00000004077)	bbs7 (ENSSSAG00000004055)	TMM33 (ENSSSAG00000004032)	ENSSSAG00000103979	LIMCH1 (ENSSSAG00000003887)	ENSSSAG00000083240	ENSSSAG00000003772	ENSSSAG00000120090	ENSSSAG00000003736	ENSSSAG00000120829
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00390000005639.a.a.s.b ##22
Oncorhynchus_a	ANCESTRAL SPECIES	2	ENSGT01030000234566.e.b.a.a.a.b.g	ENSGT00390000008593.a.f	ENSGT00940000159253	ENSGT00940000158645.e	ENSGT00940000156344.b.a	ENSGT00940000156950.a.o	ENSGT00420000029769.b	ENSGT00940000155618.i.b	ENSGT00940000158241.h.a	ENSGT00390000010773.e.b	ENSGT00940000154672.kb	ENSGT01100000264986	ENSGT00940000156418.h	ENSGT00940000156495.k	ENSGT00390000000470.n.c	ENSGT00390000005639.a.a.s.b ##22	ENSGT00390000010628.b.d.b	ENSGT00530000063586.b.c.b.c	ENSGT00940000154372.a.a.a.d	ENSGT00940000154372.a.b.b.a	ENSGT00940000155988.d.f	ENSGT00940000155372.t	ENSGT00390000012346.a	ENSGT00390000011368.c.b	ENSGT00940000159958.e	ENSGT00950000183159.a.v.b.c	ENSGT00940000161041.h	ENSGT00910000144269.m	ENSGT00550000074935.e	ENSGT00940000162460.s.d	ENSGT01000000220458
Chinook salmon	MODERN SPECIES	13	gpm6aa (ENSOTSG00005045681)	spata4 (ENSOTSG00005045685)	asb5a (ENSOTSG00005045686)	neil3 (ENSOTSG00005045811)	aga (ENSOTSG00005045814)	ENSOTSG00005045827	tdo2a (ENSOTSG00005046304)	CTSO (ENSOTSG00005046356)	ENSOTSG00005046358	PDGFC (ENSOTSG00005046359)	glrbb (ENSOTSG00005046361)	gria2b (ENSOTSG00005046363)	RAPGEF2 (ENSOTSG00005046444)	fstl5 (ENSOTSG00005047056)	qdpra (ENSOTSG00005047058)	ldb2a (ENSOTSG00005047059) ##22	TAPT1 (ENSOTSG00005047061)	prom1a (ENSOTSG00005047147)	fgfbp2a (ENSOTSG00005047335)	ENSOTSG00005047336	anxa5a (ENSOTSG00005047340)	ccna2 (ENSOTSG00005047353)	bbs7 (ENSOTSG00005047358)	tmem33 (ENSOTSG00005047362)	phox2bb (ENSOTSG00005047365)	ENSOTSG00005047366	kctd8 (ENSOTSG00005047368)	PIGG (ENSOTSG00005047376)	fnta (ENSOTSG00005047388)	GSTP1 (ENSOTSG00005047390)	ENSOTSG00005047391
Huchen	MODERN SPECIES	392													fstl5 (ENSHHUG00000044607)	ENSHHUG00000044603	qdpra (ENSHHUG00000044599)	ldb2a (ENSHHUG00000044577) ##22	TAPT1 (ENSHHUG00000044515)	prom1a (ENSHHUG00000044472)	fgfbp2a (ENSHHUG00000044465)	ENSHHUG00000044461	anxa5a (ENSHHUG00000044391)	ccna2 (ENSHHUG00000044387)	bbs7 (ENSHHUG00000044368)	tmem33 (ENSHHUG00000044350)	phox2bb (ENSHHUG00000044348)	LIMCH1 (ENSHHUG00000044276)	kctd8 (ENSHHUG00000044274)	PIGG (ENSHHUG00000044264)
Salmoninae	ANCESTRAL SPECIES																	ENSGT00390000005639.a.a.t ##22
Huchen	MODERN SPECIES	10883																ENSHHUG00000018853 ##22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00390000005639.a.a.t ##22
Oncorhynchus	ANCESTRAL SPECIES	4	ENSGT01030000234566.e.b.a.a.a.b.g	ENSGT00390000008593.a.f	ENSGT00940000159253	ENSGT00940000158645.e	ENSGT00940000156344.b.a	ENSGT00940000156950.a.o	ENSGT00420000029769.b	ENSGT00940000155618.i.b	ENSGT00940000158241.h.a	ENSGT00390000010773.e.b	ENSGT00940000154672.kb	ENSGT01100000264986	ENSGT00940000156418.h	ENSGT00940000156495.k	ENSGT00390000000470.n.c	ENSGT00390000005639.a.a.t ##22	ENSGT00390000010628.b.d.b	ENSGT00530000063586.b.c.b.c	ENSGT00940000154372.a.a.a.d	ENSGT00940000154372.a.b.b.a	ENSGT00940000155988.d.f	ENSGT00940000155372.t	ENSGT00390000012346.a	ENSGT00390000011368.c.b	ENSGT00940000159958.e	ENSGT00950000183159.a.v.b.c	ENSGT00940000161041.h	ENSGT00910000144269.m	ENSGT00550000074935.e	ENSGT00940000162460.s.d	ENSGT00940000163435
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00390000005639.a.a.t ##22
Coho salmon	MODERN SPECIES	10	tdo2a (ENSOKIG00005008444)	CTSO (ENSOKIG00005008961)	PDGFC (ENSOKIG00005008989)	glrbb (ENSOKIG00005009005)	gria2b (ENSOKIG00005009055)	GASK1B (ENSOKIG00005009377)	ENSOKIG00005009382	rxfp1 (ENSOKIG00005009390)	etfdh (ENSOKIG00005009499)	ppid (ENSOKIG00005010944)	ENSOKIG00005010970	RAPGEF2 (ENSOKIG00005011234)	ENSOKIG00005015552	FSTL5 (ENSOKIG00005015613)	qdpra (ENSOKIG00005016591)	ENSOKIG00005016600 ##22	TAPT1 (ENSOKIG00005016653)	prom1a (ENSOKIG00005017778)	fgfbp2a (ENSOKIG00005018766)	ENSOKIG00005018771	anxa5a (ENSOKIG00005018778)	ccna2 (ENSOKIG00005018857)	bbs7 (ENSOKIG00005018896)	TMEM33 (ENSOKIG00005019216)	phox2bb (ENSOKIG00005019251)	LIMCH1 (ENSOKIG00005019393)	kctd8 (ENSOKIG00005021282)	PIGG (ENSOKIG00005021325)	fnta (ENSOKIG00005021976)	GSTP1 (ENSOKIG00005022083)	ENSOKIG00005022099
Rainbow trout	MODERN SPECIES	5	ENSOMYG00000058953	glrbb (ENSOMYG00000016790)	ENSOMYG00000068146	gria2b (ENSOMYG00000017053)	GASK1B (ENSOMYG00000020118)	ENSOMYG00000069231	rxfp1 (ENSOMYG00000020148)	etfdh (ENSOMYG00000020343)	ppid (ENSOMYG00000021833)	ENSOMYG00000062165	ENSOMYG00000021842	RAPGEF2 (ENSOMYG00000022637)	FSTL5 (ENSOMYG00000029161)	ENSOMYG00000051129	QDPR (ENSOMYG00000029765)	ENSOMYG00000029916 ##22	TAPT1 (ENSOMYG00000030408)	prom1a (ENSOMYG00000031568)	fgfbp2a (ENSOMYG00000033997)	ENSOMYG00000034005	anxa5a (ENSOMYG00000034079)	CCNA2 (ENSOMYG00000034475)	BBS7 (ENSOMYG00000034504)	TMEM33 (ENSOMYG00000034535)	ENSOMYG00000075102	ENSOMYG00000034549	LIMCH1 (ENSOMYG00000034624)	ENSOMYG00000034691	ENSOMYG00000034756	ENSOMYG00000075151	fnta (ENSOMYG00000035581)
Vertebrata	ANCESTRAL SPECIES																	ENSGT00390000005639.b ##22
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00390000005639.b ##22
Lamprey	MODERN SPECIES	2632																ENSPMAG00000008207 ##22
Hagfish	MODERN SPECIES	964													ENSEBUG00000010138	ENSEBUG00000012290	ciao1 (ENSEBUG00000004814)	ldb2a (ENSEBUG00000001548) ##22	ENSEBUG00000007056	ENSEBUG00000015296	ENSEBUG00000015787 #26	ENSEBUG00000010426	ENSEBUG00000011848	ENSEBUG00000004334	ENSEBUG00000014173 #21	ENSEBUG00000008313	pdcd4a (ENSEBUG00000009505)	ENSEBUG00000008874	ENSEBUG00000001173	ENSEBUG00000002083	ENSEBUG00000002909	ENSEBUG00000000780	ENSEBUG00000005811