Amniota	ANCESTRAL SPECIES		ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00940000155156.a.b	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000185226	ENSGT00940000167196	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117
Mammalia	ANCESTRAL SPECIES	7	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000185226	ENSGT00940000167196	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117
Theria	ANCESTRAL SPECIES	15	ENSGT00940000155156.b	ENSGT00940000155156.a.b	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000185226	ENSGT00940000167196	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117
Eutheria	ANCESTRAL SPECIES	3	ENSGT00940000155156.b	ENSGT00940000155156.a.b	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000185226	ENSGT00940000167196	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000160005.A	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981
Boreoeutheria	ANCESTRAL SPECIES	1	ENSGT01030000234954	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00900000143390	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000185226	ENSGT00940000167196	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163440	ENSGT00940000162409	ENSGT00940000160005.A	ENSGT00940000163778	ENSGT00940000163858
Euarchontoglires	ANCESTRAL SPECIES	1	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00900000143390	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000185226	ENSGT00940000167196	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409	ENSGT00940000163419	ENSGT00940000160005.A	ENSGT00940000163778	ENSGT00940000163440
Primates	ANCESTRAL SPECIES		ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00900000143390	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409	ENSGT00940000163419	ENSGT00940000160005.A	ENSGT00940000163778	ENSGT00940000163440	ENSGT00940000163858
Haplorrhini	ANCESTRAL SPECIES		ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00900000143390	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409	ENSGT00940000163419	ENSGT00940000160005.A	ENSGT00940000163778	ENSGT00940000163440	ENSGT00940000163858
Simiiformes	ANCESTRAL SPECIES		ENSGT00860000135923	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00900000143390	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163778	ENSGT00940000160005.A	ENSGT00940000163419	ENSGT00940000162409	ENSGT00940000163440	ENSGT00940000163858
Catarrhini	ANCESTRAL SPECIES	1	ENSGT00860000135923	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00550000074935.v	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946 #25	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00910000147856	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163778	ENSGT00940000160005.A	ENSGT00940000163419
Cercopithecidae	ANCESTRAL SPECIES		ENSGT00860000135923	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00550000074935.v	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946 #25	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT00910000147216	ENSGT01030000234595.A.a	ENSGT00910000147856	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163778	ENSGT00940000163440.a
Rhinopithecus	ANCESTRAL SPECIES	265	ENSGT00940000154847.b	ENSGT00940000153402.c.a.a.b.d #7	ENSGT00390000008688.j #8	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00940000167729 #16	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946 #25
Black snub-nosed monkey	MODERN SPECIES	1515	ENSRBIG00000039292 #7	ENSRBIG00000038408 #8	TMEM126B (ENSRBIG00000027901) #9	TMEM126A (ENSRBIG00000044867) #10	CREBZF (ENSRBIG00000033657) #11	SYTL2 (ENSRBIG00000027668) #12	CCDC83 (ENSRBIG00000041473) #13	PICALM (ENSRBIG00000028102) #14	ENSRBIG00000006505 #15	ENSRBIG00000031252 #16	EED (ENSRBIG00000043003) #17	HIKESHI (ENSRBIG00000030285) #18	CCDC81 (ENSRBIG00000044110) #19	ENSRBIG00000006153 #20	ME3 (ENSRBIG00000038261) #21	PRSS23 (ENSRBIG00000011058) #22	FZD4 (ENSRBIG00000037688) #23	TMEM135 (ENSRBIG00000040442) #24	ENSRBIG00000008442 #25
Cercopithecinae	ANCESTRAL SPECIES	3	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00550000074935.v	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946 #25	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT00910000147216	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163778	ENSGT00940000163440.a	ENSGT00940000160005.A.g	ENSGT00940000163440.b.b
Cercopithecinae_a	ANCESTRAL SPECIES	2	ENSGT00940000154847.b	ENSGT00940000153402.c.a.a.b.d #7	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00550000074935.v	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946 #25	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT00910000147216	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163778	ENSGT00940000163440.b.a	ENSGT00940000163213.a.b.d	ENSGT01030000234598.b.a.b.k.b
Macaca	ANCESTRAL SPECIES	2	ENSGT00940000154847.b	ENSGT00940000153402.c.a.a.b.d #7	ENSGT00520000055616.b.e #9	ENSGT00520000055616.b.f #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00550000074935.v	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946 #25	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT00910000147216	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163778	ENSGT00940000163440.b.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000161627.a.a.a.a.b.a.a.b.a.a.a.a.a.a.a.b.a.a.a.b.a.b.b.a.b
Macaca_a	ANCESTRAL SPECIES	3	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT01100000263493.a.b.a.a.a.a.a.a.a.b.a.a.b.a.a.a	ENSGT00520000055616.b.f #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT01100000263509.a.a.b.a.a.b	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163778	ENSGT00940000163440.b.a	ENSGT00940000163419.g	ENSGT00940000163440.b.b	ENSGT00940000160005.A.g.a	ENSGT00940000163213.a.b.c.a	ENSGT00940000163440.a.b.a
Crab-eating macaque	MODERN SPECIES	5	ENSMFAG00000052763	ENSMFAG00000037137 #9	TMEM126A (ENSMFAG00000000919) #10	ENSMFAG00000059074	CCDC89 (ENSMFAG00000015719)	SYTL2 (ENSMFAG00000032887) #12	ENSMFAG00000056194	CCDC83 (ENSMFAG00000002840) #13	PICALM (ENSMFAG00000002978) #14	ENSMFAG00000059633	ENSMFAG00000049118	EED (ENSMFAG00000045418) #17	HIKESHI (ENSMFAG00000035626) #18	CCDC81 (ENSMFAG00000003801) #19	ME3 (ENSMFAG00000037695) #21	PRSS23 (ENSMFAG00000036910) #22	FZD4 (ENSMFAG00000034431) #23	TMEM135 (ENSMFAG00000016730) #24	RAB38 (ENSMFAG00000044903)	ENSMFAG00000049993	CTSC (ENSMFAG00000031718)	GRM5 (ENSMFAG00000034520)	ENSMFAG00000057700	ENSMFAG00000051174	ENSMFAG00000048157	ENSMFAG00000056499	TYR (ENSMFAG00000045366)	NOX4 (ENSMFAG00000002005)	FOLH1 (ENSMFAG00000044622)	TRIM77 (ENSMFAG00000043172)	ENSMFAG00000054922
Rhesus	MODERN SPECIES	5	ENSMMUG00000051769	ENSMMUG00000050245	ENSMMUG00000050119	TMEM126B (ENSMMUG00000016540) #9	TMEM126A (ENSMMUG00000057373) #10	CREBZF (ENSMMUG00000016543) #11	CCDC89 (ENSMMUG00000063415)	SYTL2 (ENSMMUG00000012449) #12	ENSMMUG00000058091	CCDC83 (ENSMMUG00000019617) #13	PICALM (ENSMMUG00000019618) #14	EED (ENSMMUG00000019621) #17	HIKESHI (ENSMMUG00000017730) #18	CCDC81 (ENSMMUG00000013045) #19	ME3 (ENSMMUG00000013055) #21	PRSS23 (ENSMMUG00000003717) #22	FZD4 (ENSMMUG00000004048) #23	TMEM135 (ENSMMUG00000010229) #24	RAB38 (ENSMMUG00000016006)	CTSC (ENSMMUG00000022139)	GRM5 (ENSMMUG00000010184)	ENSMMUG00000051617	TYR (ENSMMUG00000011115)	NOX4 (ENSMMUG00000011116)	FOLH1 (ENSMMUG00000012596)	TRIM77 (ENSMMUG00000048340)	ENSMMUG00000051536	ENSMMUG00000064584	ENSMMUG00000051175	ENSMMUG00000053493	ENSMMUG00000041090
Cercopithecinae_b	ANCESTRAL SPECIES	32	ENSGT00940000154847.b	ENSGT00940000153402.c.a.a.b.d #7	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00550000074935.v	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946 #25	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT00910000147216	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163778	ENSGT00940000163440.a.a	ENSGT00940000163440.b.a	ENSGT00940000163213.a.b.d
Olive baboon	MODERN SPECIES	3	ENSPANG00000046399	ENSPANG00000042996	DLG2 (ENSPANG00000007863)	TMEM126B (ENSPANG00000014631) #9	TMEM126A (ENSPANG00000011636) #10	ENSPANG00000035892	CCDC89 (ENSPANG00000048782)	SYTL2 (ENSPANG00000010114) #12	CCDC83 (ENSPANG00000019126) #13	PICALM (ENSPANG00000019177) #14	EED (ENSPANG00000023331) #17	HIKESHI (ENSPANG00000006476) #18	CCDC81 (ENSPANG00000011943) #19	ENSPANG00000038398 #20	ME3 (ENSPANG00000019664) #21	PRSS23 (ENSPANG00000001585) #22	FZD4 (ENSPANG00000007432) #23	TMEM135 (ENSPANG00000016447) #24	RAB38 (ENSPANG00000007862)	ENSPANG00000040539	CTSC (ENSPANG00000006475)	ENSPANG00000041846	GRM5 (ENSPANG00000010013)	ENSPANG00000042320	TYR (ENSPANG00000050970)	NOX4 (ENSPANG00000011635)	ENSPANG00000037841	FOLH1 (ENSPANG00000034012)	TRIM77 (ENSPANG00000031543)	ENSPANG00000012860	ENSPANG00000022721
Vervet Monkey	MODERN SPECIES		ANKRD42 (ENSCSAG00000003699)	CCDC90B (ENSCSAG00000003693)	DLG2 (ENSCSAG00000003691)	TMEM126B (ENSCSAG00000003685) #9	TMEM126A (ENSCSAG00000003683) #10	CREBZF (ENSCSAG00000000613) #11	CCDC89 (ENSCSAG00000000612)	SYTL2 (ENSCSAG00000003677) #12	CCDC83 (ENSCSAG00000003666) #13	ENSCSAG00000000611	PICALM (ENSCSAG00000003661) #14	EED (ENSCSAG00000003653) #17	HIKESHI (ENSCSAG00000003649) #18	CCDC81 (ENSCSAG00000003644) #19	ME3 (ENSCSAG00000003640) #21	PRSS23 (ENSCSAG00000000610) #22	FZD4 (ENSCSAG00000003633) #23	TMEM135 (ENSCSAG00000003625) #24	RAB38 (ENSCSAG00000003620)	CTSC (ENSCSAG00000003618)	GRM5 (ENSCSAG00000003616)	TYR (ENSCSAG00000003613)	NOX4 (ENSCSAG00000003604)	FOLH1 (ENSCSAG00000003592)	TRIM77 (ENSCSAG00000003587)	ENSCSAG00000003583	ENSCSAG00000003576	ENSCSAG00000003574	ENSCSAG00000003571	ENSCSAG00000003569	ENSCSAG00000003564
Hominoidea	ANCESTRAL SPECIES	1	ENSGT00940000154847.b	ENSGT00940000153402.c.b.b.e.a ##7	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00550000074935.v	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946 #25	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00910000147856	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163778	ENSGT00940000163440.c	ENSGT00940000165665.b	ENSGT00940000163419.d.a.b
Hominidae	ANCESTRAL SPECIES	1	ENSGT00940000154847.b	ENSGT00940000153402.c.b.b.e.a ##7	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00550000074935.v	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946 #25	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00910000147856	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163778	ENSGT00940000163440.c	ENSGT00940000165665.b	ENSGT00940000163213.a.b.b.b
Orangutan	MODERN SPECIES	2	CCDC90B (ENSPPYG00000003736)	DLG2 (ENSPPYG00000003737)	TMEM126A (ENSPPYG00000003738) #10	CREBZF (ENSPPYG00000003740) #11	CCDC89 (ENSPPYG00000003741)	SYTL2 (ENSPPYG00000003742) #12	CCDC83 (ENSPPYG00000003743) #13	ENSPPYG00000038885	PICALM (ENSPPYG00000003744) #14	ENSPPYG00000032045 #16	EED (ENSPPYG00000003745) #17	HIKESHI (ENSPPYG00000003746) #18	CCDC81 (ENSPPYG00000003747) #19	ENSPPYG00000036300 #20	ME3 (ENSPPYG00000003748) #21	PRSS23 (ENSPPYG00000003749) #22	FZD4 (ENSPPYG00000003750) #23	TMEM135 (ENSPPYG00000003751) #24	RAB38 (ENSPPYG00000003752)	CTSC (ENSPPYG00000003753)	GRM5 (ENSPPYG00000003754)	TYR (ENSPPYG00000003755)	NOX4 (ENSPPYG00000003756)	FOLH1 (ENSPPYG00000003757)	TRIM77 (ENSPPYG00000003758)	ENSPPYG00000004089	ENSPPYG00000040623	ENSPPYG00000038435	ENSPPYG00000003762	ENSPPYG00000034685	ENSPPYG00000040150
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	8	ENSGT00940000153402.c.b.b.e.a ##7	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00550000074935.v	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT01050000244956.b.c.a.b	ENSGT00910000148359	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946 #25	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00910000147856	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163778	ENSGT00940000165665.b.d	ENSGT00940000163213.a.b.b.b	ENSGT00940000163419.c
Homo/Pan group	ANCESTRAL SPECIES	1	ENSGT00940000153402.c.b.b.e.a ##7	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00550000074935.v	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT01050000244956.b.c.a.b	ENSGT00910000148359	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946 #25	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00910000147856	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163778	ENSGT00940000165665.b.d	ENSGT00940000163419.c.b	ENSGT00940000163440.d
Human	MODERN SPECIES	2	PCF11 (ENSG00000165494)	ANKRD42 (ENSG00000137494)	CCDC90B (ENSG00000137500)	DLG2 (ENSG00000150672)	TMEM126B (ENSG00000171204) #9	TMEM126A (ENSG00000171202) #10	CREBZF (ENSG00000137504) #11	CCDC89 (ENSG00000179071)	SYTL2 (ENSG00000137501) #12	CCDC83 (ENSG00000150676) #13	PICALM (ENSG00000073921) #14	EED (ENSG00000074266) #17	HIKESHI (ENSG00000149196) #18	CCDC81 (ENSG00000149201) #19	ME3 (ENSG00000151376) #21	PRSS23 (ENSG00000150687) #22	FZD4 (ENSG00000174804) #23	TMEM135 (ENSG00000166575) #24	RAB38 (ENSG00000123892)	CTSC (ENSG00000109861)	GRM5 (ENSG00000168959)	TYR (ENSG00000077498)	NOX4 (ENSG00000086991)	TRIM77 (ENSG00000214414)	TRIM49 (ENSG00000168930)	TRIM64B (ENSG00000189253)	TRIM49D1 (ENSG00000223417)	TRIM49D2 (ENSG00000233802)	TRIM64 (ENSG00000204450)	TRIM49C (ENSG00000204449)	UBTFL1 (ENSG00000255009)
Strepsirrhini	ANCESTRAL SPECIES	6	ENSGT00940000155453	ENSGT00940000155156.b.`b	ENSGT00520000055616.b #9	ENSGT00520000055616.a.`b #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00900000143390	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117	ENSGT00940000153190.B.a	ENSGT00390000015987
Lemuriformes	ANCESTRAL SPECIES	13	ENSGT00940000155453	ENSGT00940000155156.b.`b	ENSGT00520000055616.b #9	ENSGT00520000055616.a.`b #10	ENSGT00390000016589 #11	ENSGT00910000148212	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00900000143390	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000160005.A.l	ENSGT00940000163440	ENSGT00940000160005.A.k	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981
Mouse lemur	MODERN SPECIES	27	KCTD14 (ENSMICG00000044183)	ENSMICG00000043874	ENSMICG00000027485	ENSMICG00000009022	TMEM126B (ENSMICG00000029604) #9	TMEM126A (ENSMICG00000005510) #10	CREBZF (ENSMICG00000033683) #11	SYTL2 (ENSMICG00000005519) #12	CCDC83 (ENSMICG00000017254) #13	PICALM (ENSMICG00000017261) #14	ENSMICG00000010728 #17	HIKESHI (ENSMICG00000000946) #18	CCDC81 (ENSMICG00000000948) #19	ENSMICG00000037743	ME3 (ENSMICG00000000951) #21	PRSS23 (ENSMICG00000026361) #22	FZD4 (ENSMICG00000012533) #23	TMEM135 (ENSMICG00000013387) #24	RAB38 (ENSMICG00000028169)	CTSC (ENSMICG00000002445)	GRM5 (ENSMICG00000002451)	TYR (ENSMICG00000037850)	NOX4 (ENSMICG00000014398)	ENSMICG00000042150	ENSMICG00000013580	NAALAD2 (ENSMICG00000015630)	ENSMICG00000015646	ENSMICG00000031389	MTNR1B (ENSMICG00000043189)	SLC36A4 (ENSMICG00000033063)	DEUP1 (ENSMICG00000017876)
Lemuriformes_a	ANCESTRAL SPECIES	133	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b.`b	ENSGT00520000055616.b #9	ENSGT00520000055616.a.`b #10	ENSGT00910000148212	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00900000143390	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163858	ENSGT00940000160005.A.k	ENSGT00940000163440	ENSGT00940000160005.A.l	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174
Greater bamboo lemur	MODERN SPECIES	625	TMEM126B (ENSPSMG00000007232) #9	ENSPSMG00000007247 #10	ENSPSMG00000007260	CCDC89 (ENSPSMG00000007263)	SYTL2 (ENSPSMG00000007523) #12	CCDC83 (ENSPSMG00000007641) #13	ENSPSMG00000007653	PICALM (ENSPSMG00000008098) #14	ENSPSMG00000008423	ENSPSMG00000008429	ENSPSMG00000008449	EED (ENSPSMG00000008532) #17	HIKESHI (ENSPSMG00000008554) #18	CCDC81 (ENSPSMG00000008616) #19	ME3 (ENSPSMG00000008707) #21	PRSS23 (ENSPSMG00000008732) #22	FZD4 (ENSPSMG00000008734) #23	TMEM135 (ENSPSMG00000008862) #24	RAB38 (ENSPSMG00000008937)	CTSC (ENSPSMG00000008979)	GRM5 (ENSPSMG00000009090)	TYR (ENSPSMG00000009145)	NOX4 (ENSPSMG00000009300)	FOLH1 (ENSPSMG00000009438)	ENSPSMG00000009461	ENSPSMG00000009467	ENSPSMG00000009478	ENSPSMG00000009540	NAALAD2 (ENSPSMG00000009674)	CHORDC1 (ENSPSMG00000009826)
Bushbaby	MODERN SPECIES	116	DLG2 (ENSOGAG00000010597)	ENSOGAG00000029637	ENSOGAG00000027183	ENSOGAG00000005403 #10	CREBZF (ENSOGAG00000027039) #11	CCDC89 (ENSOGAG00000005407)	ENSOGAG00000030902 #12	CCDC83 (ENSOGAG00000013946) #13	PICALM (ENSOGAG00000013950) #14	ENSOGAG00000029699	EED (ENSOGAG00000025611) #17	HIKESHI (ENSOGAG00000013958) #18	CCDC81 (ENSOGAG00000013961) #19	ENSOGAG00000025640 #20	ME3 (ENSOGAG00000013965) #21	PRSS23 (ENSOGAG00000011479) #22	ENSOGAG00000032179 ##7	FZD4 (ENSOGAG00000011478) #23	TMEM135 (ENSOGAG00000013804) #24	ENSOGAG00000027554	ENSOGAG00000027235	RAB38 (ENSOGAG00000004961)	CTSC (ENSOGAG00000009168)	GRM5 (ENSOGAG00000003814)	ENSOGAG00000024204	NOX4 (ENSOGAG00000012261)	FOLH1 (ENSOGAG00000002014)	NAALAD2 (ENSOGAG00000011836)	CHORDC1 (ENSOGAG00000003523)	ENSOGAG00000030993	ENSOGAG00000015055
Euarchontoglires_A	ANCESTRAL SPECIES	1	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00900000143390	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117	ENSGT00940000153190.B.a	ENSGT00390000015987
Tree shrew	MODERN SPECIES	2511															ME3 (ENSTBEG00000013109) #21	PRSS23 (ENSTBEG00000013503) #22	TMEM135 (ENSTBEG00000013609) #24
Glires	ANCESTRAL SPECIES	1	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00900000143390	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117	ENSGT00940000153190.B.a	ENSGT00390000015987
Rodentia	ANCESTRAL SPECIES	1	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00900000143390	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117	ENSGT00940000153190.B.a	ENSGT00390000015987
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00940000155453.n.b	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00900000143390	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174.f	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117	ENSGT00940000153190.B.a	ENSGT00390000015987
Sciuridae	ANCESTRAL SPECIES	2	ENSGT00940000154216.a	ENSGT00940000155453.o	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163440	ENSGT00940000160005.A.n	ENSGT00940000162409	ENSGT00940000163419	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174.f	ENSGT00940000154981
Marmotini	ANCESTRAL SPECIES	28	ENSGT00940000154216.a	ENSGT00940000155453.o	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409.a	ENSGT00940000162409.b	ENSGT00940000163419
Marmotini_b	ANCESTRAL SPECIES	13	ENSGT00940000154216.a	ENSGT00940000155453.n.a	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409.a	ENSGT00940000162409.b
Arctic ground squirrel	MODERN SPECIES	249													HIKESHI (ENSUPAG00010006622) #18	CCDC81 (ENSUPAG00010006635) #19	ME3 (ENSUPAG00010006666) #21	PRSS23 (ENSUPAG00010006681) #22	FZD4 (ENSUPAG00010006688) #23	TMEM135 (ENSUPAG00010006691) #24	RAB38 (ENSUPAG00010006729)	ENSUPAG00010006747	GRM5 (ENSUPAG00010006754)	ENSUPAG00010006768	ENSUPAG00010006773	TYR (ENSUPAG00010006775)	NOX4 (ENSUPAG00010006782)	ENSUPAG00010006804	ENSUPAG00010006822	ENSUPAG00010007051
Squirrel	MODERN SPECIES	98	CCDC90B (ENSSTOG00000001632)	ENSSTOG00000024205	DLG2 (ENSSTOG00000002895)	TMEM126B (ENSSTOG00000002952) #9	ENSSTOG00000016101 #10	CREBZF (ENSSTOG00000002975) #11	CCDC89 (ENSSTOG00000002976)	SYTL2 (ENSSTOG00000027973) #12	CCDC83 (ENSSTOG00000008671) #13	PICALM (ENSSTOG00000008689) #14	EED (ENSSTOG00000004680) #17	HIKESHI (ENSSTOG00000004702) #18	CCDC81 (ENSSTOG00000014479) #19	ENSSTOG00000028574 #20	ME3 (ENSSTOG00000014488) #21	PRSS23 (ENSSTOG00000007434) #22	FZD4 (ENSSTOG00000007437) #23
Alpin marmot	MODERN SPECIES	3	PCF11 (ENSMMMG00000006414)	ANKRD42 (ENSMMMG00000006331)	CCDC90B (ENSMMMG00000006292)	ENSMMMG00000006288	DLG2 (ENSMMMG00000005928)	TMEM126B (ENSMMMG00000005835) #9	ENSMMMG00000005829 #10	CCDC89 (ENSMMMG00000005814)	ENSMMMG00000005468 #12	CCDC83 (ENSMMMG00000005426) #13	PICALM (ENSMMMG00000005144) #14	EED (ENSMMMG00000005118) #17	HIKESHI (ENSMMMG00000005096) #18	CCDC81 (ENSMMMG00000005061) #19	ME3 (ENSMMMG00000004996) #21	PRSS23 (ENSMMMG00000004975) #22	FZD4 (ENSMMMG00000004931) #23	TMEM135 (ENSMMMG00000004893) #24	RAB38 (ENSMMMG00000004867)	CTSC (ENSMMMG00000004793)	GRM5 (ENSMMMG00000004503)	TYR (ENSMMMG00000004445)	NOX4 (ENSMMMG00000004402)	ENSMMMG00000004374	FOLH1 (ENSMMMG00000004192)
Eurasian red squirrel	MODERN SPECIES	2	DLG2 (ENSSVLG00005016472)	TMEM126B (ENSSVLG00005019236) #9	TMEM126A (ENSSVLG00005019268) #10	CREBZF (ENSSVLG00005019339) #11	CCDC89 (ENSSVLG00005019395)	SYTL2 (ENSSVLG00005019752) #12	CCDC83 (ENSSVLG00005020010) #13	PICALM (ENSSVLG00005020135) #14	EED (ENSSVLG00005020425) #17	HIKESHI (ENSSVLG00005020558) #18	CCDC81 (ENSSVLG00005020655) #19	ENSSVLG00005021006 #20	ME3 (ENSSVLG00005021021) #21	ENSSVLG00005021162	ENSSVLG00005021180	PRSS23 (ENSSVLG00005021223) #22	FZD4 (ENSSVLG00005021251) #23	TMEM135 (ENSSVLG00005021306) #24	RAB38 (ENSSVLG00005021462)	CTSC (ENSSVLG00005021500)	GRM5 (ENSSVLG00005021581)	ENSSVLG00005021721	TYR (ENSSVLG00005021737)	NOX4 (ENSSVLG00005021836)	ENSSVLG00005022060	FOLH1 (ENSSVLG00005022156)	ENSSVLG00005022633	ENSSVLG00005022685	ENSSVLG00005022728	ENSSVLG00005022760	ENSSVLG00005022908
Hystricomorpha	ANCESTRAL SPECIES	5	ENSGT00940000154216.a	ENSGT00940000155453.n.b.b	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00900000143390	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174.f	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117	ENSGT00940000153190.B.a	ENSGT00390000015987
Naked mole-rat female	MODERN SPECIES	24	ENSHGLG00000003500	ENSHGLG00000003233 #10	CREBZF (ENSHGLG00000003083) #11	CCDC89 (ENSHGLG00000037872)	ENSHGLG00000002340 #12	CCDC83 (ENSHGLG00000036065) #13	PICALM (ENSHGLG00000001052) #14	ENSHGLG00000001667	EED (ENSHGLG00000001511) #17	ENSHGLG00000041908	CCDC81 (ENSHGLG00000001095) #19	ENSHGLG00000038302 #20	ENSHGLG00000001103	ME3 (ENSHGLG00000001044) #21	ENSHGLG00000000902	PRSS23 (ENSHGLG00000047569) #22	FZD4 (ENSHGLG00000000698) #23	ENSHGLG00000032437	ENSHGLG00000043753	TMEM135 (ENSHGLG00000001739) #24	ENSHGLG00000045425	ENSHGLG00000034306	RAB38 (ENSHGLG00000041890)	CTSC (ENSHGLG00000001420)	ENSHGLG00000042131	ENSHGLG00000046021	GRM5 (ENSHGLG00000001307)	TYR (ENSHGLG00000001054)	ENSHGLG00000000730	ENSHGLG00000047307	FOLH1 (ENSHGLG00000005991)
Hystricomorpha_a	ANCESTRAL SPECIES	10	ENSGT00940000154216.a	ENSGT00940000155453.n.b.b	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00900000143390	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174.f	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117	ENSGT00940000153190.B.a	ENSGT00390000015987
Guinea pig	MODERN SPECIES	40	RAB30 (ENSCPOG00000005047)	PCF11 (ENSCPOG00000004103)	ANKRD42 (ENSCPOG00000011236)	CCDC90B (ENSCPOG00000011822)	DLG2 (ENSCPOG00000010885)	TMEM126B (ENSCPOG00000000924) #9	TMEM126A (ENSCPOG00000032709) #10	CREBZF (ENSCPOG00000000925) #11	ENSCPOG00000006998 #12	CCDC83 (ENSCPOG00000015279) #13	PICALM (ENSCPOG00000020758) #14	EED (ENSCPOG00000001815) #17	HIKESHI (ENSCPOG00000020182) #18	CCDC81 (ENSCPOG00000004853) #19	ME3 (ENSCPOG00000004861) #21	PRSS23 (ENSCPOG00000031160) #22	FZD4 (ENSCPOG00000014369) #23	TMEM135 (ENSCPOG00000033735) #24	RAB38 (ENSCPOG00000033635)	CTSC (ENSCPOG00000014848)	GRM5 (ENSCPOG00000009056)	ENSCPOG00000039497	TYR (ENSCPOG00000010608)	NOX4 (ENSCPOG00000040335)	FOLH1 (ENSCPOG00000003797)	NAALAD2 (ENSCPOG00000038440)	CHORDC1 (ENSCPOG00000022614)	ENSCPOG00000010626	MTNR1B (ENSCPOG00000010637)	SLC36A4 (ENSCPOG00000036098)	DEUP1 (ENSCPOG00000011016)
Hystricomorpha_b	ANCESTRAL SPECIES	5	ENSGT00940000154216.a	ENSGT00940000155453.n.b.a.a.b	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00900000143390	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174.f	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117	ENSGT00940000153190.B.a	ENSGT00390000015987
Long-tailed chinchilla	MODERN SPECIES	121	ANKRD42 (ENSCLAG00000015518)	CCDC90B (ENSCLAG00000015859)	ENSCLAG00000014879	DLG2 (ENSCLAG00000013708)	TMEM126B (ENSCLAG00000015945) #9	TMEM126A (ENSCLAG00000013581) #10	CREBZF (ENSCLAG00000014349) #11	CCDC89 (ENSCLAG00000018101)	ENSCLAG00000015658 #12	CCDC83 (ENSCLAG00000013107) #13	PICALM (ENSCLAG00000014073) #14	EED (ENSCLAG00000014597) #17	HIKESHI (ENSCLAG00000015127) #18	CCDC81 (ENSCLAG00000015703) #19	ME3 (ENSCLAG00000014004) #21	PRSS23 (ENSCLAG00000014382) #22	FZD4 (ENSCLAG00000013230) #23	TMEM135 (ENSCLAG00000012648) #24	RAB38 (ENSCLAG00000013006)	CTSC (ENSCLAG00000015662)	ENSCLAG00000014570	TYR (ENSCLAG00000016284)	ENSCLAG00000013267	NOX4 (ENSCLAG00000014011)	FOLH1 (ENSCLAG00000014594)	NAALAD2 (ENSCLAG00000012474)	ENSCLAG00000014963	FAT3 (ENSCLAG00000013669)	ENSCLAG00000012677	MTNR1B (ENSCLAG00000012055)	SLC36A4 (ENSCLAG00000015872)
Degu	MODERN SPECIES	90	DLG2 (ENSODEG00000004167)	ENSODEG00000004281	TMEM126B (ENSODEG00000004299) #9	ENSODEG00000004318 #10	CREBZF (ENSODEG00000004328) #11	CCDC89 (ENSODEG00000004335)	ENSODEG00000004345 #12	ENSODEG00000004377	CCDC83 (ENSODEG00000004398) #13	PICALM (ENSODEG00000004438) #14	ENSODEG00000004459	ENSODEG00000004489 #17	ENSODEG00000005068 #18	CCDC81 (ENSODEG00000005105) #19	ME3 (ENSODEG00000005138) #21	PRSS23 (ENSODEG00000019151) #22	FZD4 (ENSODEG00000005182) #23	TMEM135 (ENSODEG00000005219) #24
Rodentia_B	ANCESTRAL SPECIES	33	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a
Myomorpha	ANCESTRAL SPECIES	13	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01100000263570.A	ENSGT01090000260024.A.a.b.a.a	ENSGT01050000244828.c.b.b.b.c.a.a.a	ENSGT01090000260086.E.b	ENSGT00940000162666	ENSGT00940000160833	ENSGT00390000008646
Muroidea	ANCESTRAL SPECIES	12	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01100000263570.A	ENSGT01090000260024.A.a.b.a.a	ENSGT01050000244828.c.b.b.b.c.a.a.a	ENSGT01090000260086.E.b	ENSGT00940000162666	ENSGT00940000160833	ENSGT00390000008646
Muroidea_A	ANCESTRAL SPECIES		ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01100000263570.A	ENSGT01090000260024.A.a.b.a.a	ENSGT01050000244828.c.b.b.b.c.a.a.a.c	ENSGT01050000244828.c.b.b.b.c.a.a.a.d.a	ENSGT01090000260086.E.b	ENSGT00940000162666	ENSGT01060000248581.C.a.a
Cricetidae	ANCESTRAL SPECIES	1	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01100000263570.A	ENSGT01090000260024.A.a.b.a.a	ENSGT01050000244828.c.b.b.b.c.a.a.a.c	ENSGT01050000244828.c.b.b.b.c.a.a.a.d.a.a	ENSGT01090000260086.E.b	ENSGT00940000162666	ENSGT01060000248581.C.a.a
Cricetinae	ANCESTRAL SPECIES	15	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01050000244828.c.b.b.b.c.a.a.a.d.a.a.a	ENSGT01090000260086.E.b	ENSGT00940000162666	ENSGT01060000248581.C.a.a	ENSGT00940000160833	ENSGT00390000008646	ENSGT00960000186669
Chinese hamster chok1gshd	MODERN SPECIES	101	ENSCGRG00001006228	ENSCGRG00001004849	ENSCGRG00001020141	Tmem126b (ENSCGRG00001018676) #9	ENSCGRG00001000040 #10	Crebzf (ENSCGRG00001009481) #11	Ccdc89 (ENSCGRG00001000722)	ENSCGRG00001008518 #12	Ccdc83 (ENSCGRG00001016931) #13	ENSCGRG00001005565	Picalm (ENSCGRG00001023935) #14	Eed (ENSCGRG00001002220) #17	Hikeshi (ENSCGRG00001021205) #18	Ccdc81 (ENSCGRG00001021860) #19	Me3 (ENSCGRG00001000087) #21	Prss23 (ENSCGRG00001008698) #22	Fzd4 (ENSCGRG00001017396) #23	Tmem135 (ENSCGRG00001023218) #24	Rab38 (ENSCGRG00001014873)	Ctsc (ENSCGRG00001006267)	Grm5 (ENSCGRG00001009560)	Tyr (ENSCGRG00001019343)	Nox4 (ENSCGRG00001000979)	Folh1 (ENSCGRG00001000536)	ENSCGRG00001012337	ENSCGRG00001014707	ENSCGRG00001011155	ENSCGRG00001000891	Or6aa1 (ENSCGRG00001011705)	ENSCGRG00001011486	ENSCGRG00001011785
Golden Hamster	MODERN SPECIES	660	Ccdc90b (ENSMAUG00000021266)	Dlg2 (ENSMAUG00000012498)	Tmem126b (ENSMAUG00000014289) #9	Tmem126a (ENSMAUG00000016002) #10	Crebzf (ENSMAUG00000010774) #11	Ccdc89 (ENSMAUG00000005748)	ENSMAUG00000017590 #12	ENSMAUG00000000412 #12	Ccdc83 (ENSMAUG00000008122) #13	Picalm (ENSMAUG00000011448) #14	ENSMAUG00000019033 #17	ENSMAUG00000014854 #18	Ccdc81 (ENSMAUG00000001944) #19	ENSMAUG00000007180 #21	ENSMAUG00000012259 #21	Prss23 (ENSMAUG00000010049) #22
Cricetidae_B	ANCESTRAL SPECIES	26	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00990000214054	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01050000244828.c.b.b.b.c.a.a.a.d.a.a	ENSGT01090000260024.A.a.b.a.a	ENSGT01050000244828.c.b.b.b.c.a.a.a.c	ENSGT01090000260086.E.b	ENSGT00940000162666
Northern American deer mouse	MODERN SPECIES		Arap1 (ENSPEMG00000021221)	ENSPEMG00000030063	Pde2a (ENSPEMG00000026748)	ENSPEMG00000029000	ENSPEMG00000025401	ENSPEMG00000019643 #10	Ccdc89 (ENSPEMG00000013266)	ENSPEMG00000019500 #12	ENSPEMG00000028604	Picalm (ENSPEMG00000020088) #14	Eed (ENSPEMG00000019315) #17	Hikeshi (ENSPEMG00000020488) #18	Ccdc81 (ENSPEMG00000017793) #19	Me3 (ENSPEMG00000001307) #21	ENSPEMG00000027884	Prss23 (ENSPEMG00000015023) #22	Fzd4 (ENSPEMG00000000061) #23	Tmem135 (ENSPEMG00000009485) #24	ENSPEMG00000014375	Rab38 (ENSPEMG00000022645)	Ctsc (ENSPEMG00000023091)	Grm5 (ENSPEMG00000022095)	Tyr (ENSPEMG00000023104)	Nox4 (ENSPEMG00000021901)	Folh1 (ENSPEMG00000022051)	ENSPEMG00000025927	ENSPEMG00000027271	ENSPEMG00000008122	ENSPEMG00000000698	ENSPEMG00000029698	ENSPEMG00000023494
Prairie vole	MODERN SPECIES	9	ENSMOCG00000012985	Prcp (ENSMOCG00000012404)	ENSMOCG00000009821	Pcf11 (ENSMOCG00000001560)	Ankrd42 (ENSMOCG00000000292)	Ccdc90b (ENSMOCG00000020349)	ENSMOCG00000020913	ENSMOCG00000019058 #11	Ccdc89 (ENSMOCG00000008424)	ENSMOCG00000014020 #12	Picalm (ENSMOCG00000010921) #14	Eed (ENSMOCG00000000447) #17	ENSMOCG00000019586 #18	Ccdc81 (ENSMOCG00000007045) #19	Me3 (ENSMOCG00000005796) #21	Prss23 (ENSMOCG00000022033) #22	ENSMOCG00000007773	Tenm4 (ENSMOCG00000007967)	Nars2 (ENSMOCG00000004938)	Gab2 (ENSMOCG00000016973)	Usp35 (ENSMOCG00000015178)	Kctd21 (ENSMOCG00000009332)	Alg8 (ENSMOCG00000018035)	Ndufc2 (ENSMOCG00000014768)	Thrsp (ENSMOCG00000014398)	Ints4 (ENSMOCG00000015641)	Aamdc (ENSMOCG00000013242)	Rsf1 (ENSMOCG00000018606)	ENSMOCG00000015937	Aqp11 (ENSMOCG00000015165)	Pak1 (ENSMOCG00000012909)
Murinae	ANCESTRAL SPECIES		ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000183069.b.b.a.b.c.b.a.b.e	ENSGT01030000234598.b.a.b.k.a	ENSGT01100000263570.A.m.b.b	ENSGT01050000244828.c.b.b.b.c.a.a.a.c.b	ENSGT01100000263570.A.m.a.a	ENSGT01100000263570.A.m.a.b	ENSGT01090000260024.A.a.b.a.a	ENSGT01050000244828.c.b.b.b.c.a.a.a.c.a
Mus	ANCESTRAL SPECIES		ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00900000143322	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000183069.b.b.a.b.c.b.a.b.e.a	ENSGT01030000234598.b.a.b.k.a	ENSGT01100000263570.A.m.b.b.b	ENSGT01100000263570.A.m.a.b	ENSGT01090000260024.A.a.b.a.a	ENSGT01050000244828.c.b.b.b.c.a.a.a.c.a	ENSGT01050000244828.c.b.b.b.c.a.a.a.d.b	ENSGT01050000244828.c.b.b.b.c.a.a.a.d.a
Mus_A	ANCESTRAL SPECIES	1	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00900000143322	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000183069.b.b.a.b.c.b.a.b.e.a	ENSGT00950000183069.b.b.a.b.c.b.a.b.e.b	ENSGT01030000234598.b.a.b.k.a	ENSGT01100000263570.A.m.b.b.b	ENSGT01100000263570.A.m.a.b	ENSGT01090000260024.A.a.b.a.a	ENSGT01050000244828.c.b.b.b.c.a.a.a.c.a	ENSGT01050000244828.c.b.b.b.c.a.a.a.d.b
Mus_B	ANCESTRAL SPECIES		ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00900000143322	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000183069.b.b.a.b.c.b.a.b.e.a.a	ENSGT00950000183069.b.b.a.b.c.b.a.b.e.a.b	ENSGT00950000183069.b.b.a.b.c.b.a.b.e.b	ENSGT01030000234598.b.a.b.k.a	ENSGT01100000263570.A.m.b.b.b	ENSGT01100000263570.A.m.b.a	ENSGT01050000244828.c.b.b.b.c.a.a.a.c.b.c	ENSGT01100000263570.A.m.b.b.a.a
Mouse	MODERN SPECIES	16	Pcf11 (ENSMUSG00000041328)	Ankrd42 (ENSMUSG00000041343)	Ccdc90b (ENSMUSG00000030613)	Dlg2 (ENSMUSG00000052572)	Tmem126b (ENSMUSG00000030614) #9	Tmem126a (ENSMUSG00000030615) #10	Crebzf (ENSMUSG00000051451) #11	Ccdc89 (ENSMUSG00000044362)	Sytl2 (ENSMUSG00000030616) #12	Ccdc83 (ENSMUSG00000030617) #13	Picalm (ENSMUSG00000039361) #14	Eed (ENSMUSG00000030619) #17	Hikeshi (ENSMUSG00000062797) #18	Ccdc81 (ENSMUSG00000039391) #19	Me3 (ENSMUSG00000030621) #21	Prss23 (ENSMUSG00000039405) #22	Fzd4 (ENSMUSG00000049791) #23	Tmem135 (ENSMUSG00000039428) #24	Rab38 (ENSMUSG00000030559)	Ctsc (ENSMUSG00000030560)	Grm5 (ENSMUSG00000049583)	Tyr (ENSMUSG00000004651)	Nox4 (ENSMUSG00000030562)	Vmn2r79 (ENSMUSG00000090362)	Vmn2r78 (ENSMUSG00000091962)	Vmn2r77 (ENSMUSG00000090949)	Folh1 (ENSMUSG00000001773)	Or14c39 (ENSMUSG00000060688)	Or14c40 (ENSMUSG00000063394)	Or14a256 (ENSMUSG00000062042)	Or14c41 (ENSMUSG00000059319)
Mus_C	ANCESTRAL SPECIES	13	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00900000143322	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000183069.b.b.a.b.c.b.a.b.e.a.a	ENSGT00950000183069.b.b.a.b.c.b.a.b.e.a.b	ENSGT00950000183069.b.b.a.b.c.b.a.b.e.b	ENSGT01030000234598.b.a.b.k.a	ENSGT01100000263570.A.m.b.b.b	ENSGT01100000263570.A.m.b.a	ENSGT01050000244828.c.b.b.b.c.a.a.a.c.b.c	ENSGT01100000263570.A.m.b.b.a.a
Steppe mouse	MODERN SPECIES	3267					Tmem126a (ENSMSIG00000004649) #10	Crebzf (ENSMSIG00000004643) #11	Ccdc89 (ENSMSIG00000004633)	ENSMSIG00000004302 #12	Ccdc83 (ENSMSIG00000004142) #13	Picalm (ENSMSIG00000002381) #14	ENSMSIG00000002305	Eed (ENSMSIG00000002163) #17	Hikeshi (ENSMSIG00000002062) #18	Ccdc81 (ENSMSIG00000002033) #19	Me3 (ENSMSIG00000001983) #21	Prss23 (ENSMSIG00000001970) #22	Fzd4 (ENSMSIG00000001959) #23	Tmem135 (ENSMSIG00000001854) #24	Rab38 (ENSMSIG00000001797)	Ctsc (ENSMSIG00000001732)	Grm5 (ENSMSIG00000001662)	Tyr (ENSMSIG00000001626)	ENSMSIG00000001617	ENSMSIG00000001407	ENSMSIG00000001350	Vmn2r78 (ENSMSIG00000001291)	Vmn2r77 (ENSMSIG00000001225)	Folh1 (ENSMSIG00000001146)	Or14c39 (ENSMSIG00000001136)	Or14c40 (ENSMSIG00000001128)	Or14a256 (ENSMSIG00000001124)
spretus	MODERN SPECIES	16	Ccdc90b (MGP_SPRETEiJ_G0031099)	Dlg2 (MGP_SPRETEiJ_G0031098)	Tmem126b (MGP_SPRETEiJ_G0031097) #9	Tmem126a (MGP_SPRETEiJ_G0031096) #10	Crebzf (MGP_SPRETEiJ_G0031095) #11	Ccdc89 (MGP_SPRETEiJ_G0031094)	MGP_SPRETEiJ_G0031093 #12	Ccdc83 (MGP_SPRETEiJ_G0031092) #13	Picalm (MGP_SPRETEiJ_G0031091) #14	MGP_SPRETEiJ_G0031090	Eed (MGP_SPRETEiJ_G0031089) #17	Hikeshi (MGP_SPRETEiJ_G0031088) #18	Ccdc81 (MGP_SPRETEiJ_G0031087) #19	Me3 (MGP_SPRETEiJ_G0031086) #21	MGP_SPRETEiJ_G0031085	Prss23 (MGP_SPRETEiJ_G0031084) #22	Fzd4 (MGP_SPRETEiJ_G0031083) #23	Tmem135 (MGP_SPRETEiJ_G0031082) #24	Rab38 (MGP_SPRETEiJ_G0031081)	Ctsc (MGP_SPRETEiJ_G0031080)	Grm5 (MGP_SPRETEiJ_G0031079)	Tyr (MGP_SPRETEiJ_G0031078)	Nox4 (MGP_SPRETEiJ_G0031077)	MGP_SPRETEiJ_G0031076	MGP_SPRETEiJ_G0031075	Folh1 (MGP_SPRETEiJ_G0031074)	MGP_SPRETEiJ_G0031073	MGP_SPRETEiJ_G0031072	Or14c40 (MGP_SPRETEiJ_G0031071)	MGP_SPRETEiJ_G0031070	MGP_SPRETEiJ_G0031069
Ryukyu mouse	MODERN SPECIES	16	Ccdc90b (MGP_CAROLIEiJ_G0029989)	Dlg2 (MGP_CAROLIEiJ_G0029988)	Tmem126b (MGP_CAROLIEiJ_G0029987) #9	MGP_CAROLIEiJ_G0029986 #10	Crebzf (MGP_CAROLIEiJ_G0029985) #11	Ccdc89 (MGP_CAROLIEiJ_G0029984)	MGP_CAROLIEiJ_G0029983 #12	Ccdc83 (MGP_CAROLIEiJ_G0029982) #13	Picalm (MGP_CAROLIEiJ_G0029981) #14	MGP_CAROLIEiJ_G0029980	Eed (MGP_CAROLIEiJ_G0029979) #17	Hikeshi (MGP_CAROLIEiJ_G0029978) #18	Ccdc81 (MGP_CAROLIEiJ_G0029977) #19	Me3 (MGP_CAROLIEiJ_G0029976) #21	MGP_CAROLIEiJ_G0029975	Prss23 (MGP_CAROLIEiJ_G0029974) #22	Fzd4 (MGP_CAROLIEiJ_G0029973) #23	Tmem135 (MGP_CAROLIEiJ_G0029972) #24	Rab38 (MGP_CAROLIEiJ_G0029971)	Ctsc (MGP_CAROLIEiJ_G0029970)	Grm5 (MGP_CAROLIEiJ_G0029969)	Tyr (MGP_CAROLIEiJ_G0029968)	Nox4 (MGP_CAROLIEiJ_G0029967)	MGP_CAROLIEiJ_G0029966	Folh1 (MGP_CAROLIEiJ_G0029965)	Or14c39 (MGP_CAROLIEiJ_G0029964)	Or14a256 (MGP_CAROLIEiJ_G0029963)	Or14c45 (MGP_CAROLIEiJ_G0029962)	Or14c44 (MGP_CAROLIEiJ_G0029960)	Or6aa1 (MGP_CAROLIEiJ_G0029959)	Or14a258 (MGP_CAROLIEiJ_G0029958)
Shrew mouse	MODERN SPECIES		Ccdc90b (MGP_PahariEiJ_G0013209)	Dlg2 (MGP_PahariEiJ_G0013208)	MGP_PahariEiJ_G0013207 #9	MGP_PahariEiJ_G0013206 #10	Crebzf (MGP_PahariEiJ_G0013205) #11	Ccdc89 (MGP_PahariEiJ_G0013204)	MGP_PahariEiJ_G0013203 #12	Ccdc83 (MGP_PahariEiJ_G0013202) #13	Picalm (MGP_PahariEiJ_G0013201) #14	MGP_PahariEiJ_G0013200	Eed (MGP_PahariEiJ_G0013199) #17	Hikeshi (MGP_PahariEiJ_G0013198) #18	Ccdc81 (MGP_PahariEiJ_G0013197) #19	MGP_PahariEiJ_G0013196 #21	MGP_PahariEiJ_G0013195	Prss23 (MGP_PahariEiJ_G0013194) #22	Fzd4 (MGP_PahariEiJ_G0013193) #23	Tmem135 (MGP_PahariEiJ_G0013192) #24	Rab38 (MGP_PahariEiJ_G0013191)	Ctsc (MGP_PahariEiJ_G0013190)	Grm5 (MGP_PahariEiJ_G0013189)	Tyr (MGP_PahariEiJ_G0013188)	Nox4 (MGP_PahariEiJ_G0013187)	MGP_PahariEiJ_G0013186	MGP_PahariEiJ_G0013185	MGP_PahariEiJ_G0013184	Folh1 (MGP_PahariEiJ_G0013183)	Or14c39 (MGP_PahariEiJ_G0013182)	MGP_PahariEiJ_G0013181	MGP_PahariEiJ_G0013180	Or6aa1 (MGP_PahariEiJ_G0013179)
Rat	MODERN SPECIES		Ankrd42 (ENSRNOG00000009664)	Ccdc90b (ENSRNOG00000009462)	Dlg2 (ENSRNOG00000022635)	Tmem126b (ENSRNOG00000022732) #9	Tmem126a (ENSRNOG00000022748) #10	Crebzf (ENSRNOG00000018987) #11	LOC100911776 (ENSRNOG00000048071)	Sytl2 (ENSRNOG00000030776) #12	Ccdc83 (ENSRNOG00000052220) #13	Picalm (ENSRNOG00000018322) #14	Eed (ENSRNOG00000017509) #17	Hikeshi (ENSRNOG00000017383) #18	LOC102549852 (ENSRNOG00000022941)	Ccdc81 (ENSRNOG00000033733) #19	Me3 (ENSRNOG00000017311) #21	Prss23 (ENSRNOG00000017307) #22	Fzd4 (ENSRNOG00000063590) #23	Tmem135 (ENSRNOG00000016815) #24	Rab38 (ENSRNOG00000016769)	Ctsc (ENSRNOG00000016496)	Grm5 (ENSRNOG00000016429)	Tyr (ENSRNOG00000016421)	Nox4 (ENSRNOG00000013925)	ENSRNOG00000068544	Vom2r-ps67 (ENSRNOG00000033507)	Folh1 (ENSRNOG00000013770)	Or14c39 (ENSRNOG00000062805)	Or14a257c (ENSRNOG00000063878)	Or14c39b (ENSRNOG00000029233)	Or14a257b (ENSRNOG00000071184)	Or14a257 (ENSRNOG00000065989)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1254	Ankrd42 (ENSNGAG00000001127)	Ccdc90b (ENSNGAG00000018955)	Dlg2 (ENSNGAG00000013593)	Tmem126a (ENSNGAG00000000853) #10	ENSNGAG00000016917 #9	Crebzf (ENSNGAG00000013879) #11	Ccdc89 (ENSNGAG00000017955)	ENSNGAG00000007001 #12	Ccdc83 (ENSNGAG00000002487) #13	Picalm (ENSNGAG00000011828) #14	Eed (ENSNGAG00000020336) #17	Hikeshi (ENSNGAG00000017432) #18	Ccdc81 (ENSNGAG00000011335) #19	ENSNGAG00000000347	Me3 (ENSNGAG00000020611) #21	Prss23 (ENSNGAG00000014789) #22	Fzd4 (ENSNGAG00000011833) #23	ENSNGAG00000015588 #24	Rab38 (ENSNGAG00000012189)	Ctsc (ENSNGAG00000004920)	Grm5 (ENSNGAG00000000178)	Tyr (ENSNGAG00000013719)
Lesser Egyptian jerboa	MODERN SPECIES	65	ENSJJAG00000014690	ENSJJAG00000010286	Dlg2 (ENSJJAG00000023731)	Tmem126b (ENSJJAG00000012522) #9	Tmem126a (ENSJJAG00000008852) #10	Crebzf (ENSJJAG00000010759) #11	ENSJJAG00000010545 #12	ENSJJAG00000017139 #12	Ccdc83 (ENSJJAG00000017603) #13	ENSJJAG00000001614 #14	Eed (ENSJJAG00000016121) #17	Hikeshi (ENSJJAG00000012398) #18	ENSJJAG00000022293 ##7	Ccdc81 (ENSJJAG00000011496) #19	Me3 (ENSJJAG00000022815) #21	Prss23 (ENSJJAG00000010057) #22	Fzd4 (ENSJJAG00000008823) #23	Tmem135 (ENSJJAG00000013241) #24	Rab38 (ENSJJAG00000020660)	Ctsc (ENSJJAG00000010794)	Grm5 (ENSJJAG00000024148)	ENSJJAG00000003405	Tyr (ENSJJAG00000005553)	Nox4 (ENSJJAG00000022117)	Folh1 (ENSJJAG00000021601)	ENSJJAG00000021619	ENSJJAG00000020270	ENSJJAG00000022515	Or6f1 (ENSJJAG00000009582)	ENSJJAG00000021968	Zfand6 (ENSJJAG00000013594)
Kangaroo rat	MODERN SPECIES	341	Ccdc90b (ENSDORG00000009418)	Dlg2 (ENSDORG00000010409)	Tmem126b (ENSDORG00000006407) #9	Tmem126a (ENSDORG00000026208) #10	ENSDORG00000006410 #12	ENSDORG00000025554 #12	Ccdc83 (ENSDORG00000006094) #13	Picalm (ENSDORG00000006095) #14	ENSDORG00000024919	ENSDORG00000027843	Eed (ENSDORG00000004240) #17	Hikeshi (ENSDORG00000026855) #18	Ccdc81 (ENSDORG00000004452) #19	ENSDORG00000028501 #20	Me3 (ENSDORG00000004453) #21	Prss23 (ENSDORG00000023881) #22	Fzd4 (ENSDORG00000025486) #23	Tmem135 (ENSDORG00000011193) #24	ENSDORG00000028149	ENSDORG00000029361	Rab38 (ENSDORG00000002058)	Ctsc (ENSDORG00000014120)	Grm5 (ENSDORG00000001327)	ENSDORG00000024265	Tyr (ENSDORG00000002350)
Lagomorpha	ANCESTRAL SPECIES	5	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117	ENSGT00940000153190.B.a	ENSGT00390000015987
Rabbit	MODERN SPECIES		ENSOCUG00000016534 #10	CREBZF (ENSOCUG00000016544) #11	CCDC89 (ENSOCUG00000016547)	SYTL2 (ENSOCUG00000013753) #12	ENSOCUG00000033217	CCDC83 (ENSOCUG00000009770) #13	PICALM (ENSOCUG00000023809) #14	EED (ENSOCUG00000021263) #17	HIKESHI (ENSOCUG00000013108) #18	ENSOCUG00000037210	CCDC81 (ENSOCUG00000007318) #19	ENSOCUG00000027723 #20	ME3 (ENSOCUG00000012005) #21	ENSOCUG00000031072	ENSOCUG00000036239	PRSS23 (ENSOCUG00000004137) #22	FZD4 (ENSOCUG00000006445) #23	TMEM135 (ENSOCUG00000000713) #24	ENSOCUG00000032429	ENSOCUG00000014522	CTSC (ENSOCUG00000014527)	ENSOCUG00000012817	ENSOCUG00000029319	TYR (ENSOCUG00000009965)	NOX4 (ENSOCUG00000016685)	FOLH1 (ENSOCUG00000026120)	TRIM77 (ENSOCUG00000026390)	ENSOCUG00000008705	ENSOCUG00000027036	ENSOCUG00000011049	ENSOCUG00000036248
Pika	MODERN SPECIES	3533												ENSOPRG00000013844 #17	HIKESHI (ENSOPRG00000013869) #18	CCDC81 (ENSOPRG00000013884) #19	ME3 (ENSOPRG00000013901) #21	PRSS23 (ENSOPRG00000013925) #22	ENSOPRG00000013932 #23
Laurasiatheria	ANCESTRAL SPECIES	1	ENSGT01030000234954	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00900000143390	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00940000169935	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409	ENSGT00940000160005.A	ENSGT00940000163778	ENSGT00940000163440	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000000155.a.a #22
Hedgehog	MODERN SPECIES	9085																ENSEEUG00000002936 #22
Laurasiatheria_a	ANCESTRAL SPECIES	1	ENSGT01030000234954	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00900000143390	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00940000169935	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163440	ENSGT00940000162409	ENSGT00940000160005.B	ENSGT00940000160005.A	ENSGT00940000163778	ENSGT00940000163858
Laurasiatheria_b	ANCESTRAL SPECIES	1	ENSGT01030000234954	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00900000143390	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409	ENSGT00940000160005.A	ENSGT00940000160005.B	ENSGT00940000163778	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174
Carnivora	ANCESTRAL SPECIES	21	ENSGT01030000234954	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00900000143390	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409	ENSGT00940000160005.B	ENSGT00940000163778	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981
Caniformia	ANCESTRAL SPECIES	17	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00900000143390	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117	ENSGT00940000153190.B.a	ENSGT00390000015987
Caniformia_b	ANCESTRAL SPECIES	3	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117	ENSGT00940000153190.B.a	ENSGT00390000015987
Ursidae	ANCESTRAL SPECIES	15	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00950000186113	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b.m	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000160117	ENSGT00940000153190.B.a	ENSGT00390000015987	ENSGT00940000153123.A.e
Ursus	ANCESTRAL SPECIES	187			ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00950000186113	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a
Polar bear	MODERN SPECIES	261			TMEM126B (ENSUMAG00000023888) #9	TMEM126A (ENSUMAG00000023889) #10	CCDC89 (ENSUMAG00000023891)	ENSUMAG00000023892 #12	CCDC83 (ENSUMAG00000023895) #13	PICALM (ENSUMAG00000023896) #14	EED (ENSUMAG00000023898) #17	HIKESHI (ENSUMAG00000023906) #18	CCDC81 (ENSUMAG00000023908) #19	ENSUMAG00000023909 #20	ENSUMAG00000023910 #21	ENSUMAG00000023980 #21	ENSUMAG00000024049	PRSS23 (ENSUMAG00000024052) #22	FZD4 (ENSUMAG00000024054) #23	TMEM135 (ENSUMAG00000024056) #24	RAB38 (ENSUMAG00000024064)	CTSC (ENSUMAG00000024065)	GRM5 (ENSUMAG00000024067)	TYR (ENSUMAG00000024078)	NOX4 (ENSUMAG00000024090)	FOLH1 (ENSUMAG00000024123)
American black bear	MODERN SPECIES	2808														ENSUAMG00000008891	ENSUAMG00000008889	PRSS23 (ENSUAMG00000008886) #22	FZD4 (ENSUAMG00000008884) #23
Mustelinae	ANCESTRAL SPECIES	25	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117	ENSGT00940000153190.B.a	ENSGT00390000015987
American mink	MODERN SPECIES	6	DLG2 (ENSNVIG00000001534)	TMEM126B (ENSNVIG00000002727) #9	T126A (ENSNVIG00000002771) #10	CREBZF (ENSNVIG00000002789) #11	CCDC89 (ENSNVIG00000002820)	SYTL2 (ENSNVIG00000002830) #12	CCDC83 (ENSNVIG00000003123) #13	PICALM (ENSNVIG00000003187) #14	ENSNVIG00000003391	EED (ENSNVIG00000003411) #17	CK073 (ENSNVIG00000003496) #18	CCDC81 (ENSNVIG00000003531) #19	ENSNVIG00000003607 #20	ME3 (ENSNVIG00000003626) #21	ENSNVIG00000003666	PRS23 (ENSNVIG00000003676) #22	FZD4 (ENSNVIG00000003680) #23	TM135 (ENSNVIG00000003728) #24	ENSNVIG00000003901	E7ENT2 (ENSNVIG00000003909)	CTSC (ENSNVIG00000003934)	GRM5 (ENSNVIG00000004087)	ENSNVIG00000004099	ENSNVIG00000004112	TYR (ENSNVIG00000004130)	NOX4 (ENSNVIG00000004160)	FOLH1 (ENSNVIG00000004536)	NAALAD2 (ENSNVIG00000004661)	CHRD1 (ENSNVIG00000004738)	FAT3 (ENSNVIG00000004831)	MTNR1B (ENSNVIG00000004926)
Ferret	MODERN SPECIES	259		TMEM126B (ENSMPUG00000009961) #9	TMEM126A (ENSMPUG00000009968) #10	CREBZF (ENSMPUG00000009974) #11	CCDC89 (ENSMPUG00000018686)	ENSMPUG00000009977 #12	ENSMPUG00000009986	CCDC83 (ENSMPUG00000009994) #13	PICALM (ENSMPUG00000010037) #14	ENSMPUG00000010054	EED (ENSMPUG00000010062) #17	HIKESHI (ENSMPUG00000010148) #18	CCDC81 (ENSMPUG00000010154) #19	ENSMPUG00000018687 #20	ME3 (ENSMPUG00000010166) #21	PRSS23 (ENSMPUG00000018688) #22	FZD4 (ENSMPUG00000010353) #23	ENSMPUG00000010356	TMEM135 (ENSMPUG00000010358) #24	RAB38 (ENSMPUG00000010366)	CTSC (ENSMPUG00000010370)	GRM5 (ENSMPUG00000010375)	TYR (ENSMPUG00000010381)	NOX4 (ENSMPUG00000010385)	FOLH1 (ENSMPUG00000010390)	NAALAD2 (ENSMPUG00000010401)	CHORDC1 (ENSMPUG00000010548)	ENSMPUG00000018689	ENSMPUG00000018690	FAT3 (ENSMPUG00000010556)	ENSMPUG00000010572
Canidae	ANCESTRAL SPECIES	17	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00900000143390	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409	ENSGT00940000160005.B.g	ENSGT00940000163778	ENSGT00940000160005.B.h	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00950000183152.A.w.a
Canis_lupus	ANCESTRAL SPECIES	21	ENSGT00520000055616.b #9	ENSGT00540000070023.c.b.a.a.a.b.a.a	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00900000143390	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787.f.a	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409	ENSGT00940000160005.B.g	ENSGT00940000163778	ENSGT00940000160005.B.h	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00950000183152.A.w.a
Dog	MODERN SPECIES	13	ENSCAFG00845008664	ENSCAFG00845008649	TMEM126A (ENSCAFG00845008622) #10	ENSCAFG00845008580	CCDC89 (ENSCAFG00845008484)	SYTL2 (ENSCAFG00845008296) #12	CCDC83 (ENSCAFG00845008116) #13	ENSCAFG00845008086	PICALM (ENSCAFG00845007629) #14	HIKESHI (ENSCAFG00845007205) #17	HIKESHI (ENSCAFG00845006940) #18	CCDC81 (ENSCAFG00845006799) #19	ENSCAFG00845006757 #20	ME3 (ENSCAFG00845006657) #21	ENSCAFG00845006591	PRSS23 (ENSCAFG00845006550) #22	FZD4 (ENSCAFG00845006501) #23	TMEM135 (ENSCAFG00845006352) #24	ENSCAFG00845006234	CTSC (ENSCAFG00845026305)	GRM5 (ENSCAFG00845025940)	TYR (ENSCAFG00845025889)	NOX4 (ENSCAFG00845025676)	FOLH1B (ENSCAFG00845025397)	ENSCAFG00845025305	ENSCAFG00845025158	TRIM77 (ENSCAFG00845024925)	ENSCAFG00845024803	NAALAD2 (ENSCAFG00845024559)	CHORDC1 (ENSCAFG00845024317)	ENSCAFG00845024138
Dingo	MODERN SPECIES	245	DLG2 (ENSCAFG00020017781)	TMEM126B (ENSCAFG00020017765) #9	ENSCAFG00020017763	TMEM126A (ENSCAFG00020017761) #10	CREBZF (ENSCAFG00020017758) #11	CCDC89 (ENSCAFG00020017757)	ENSCAFG00020017754 #12	CCDC83 (ENSCAFG00020017748) #13	PICALM (ENSCAFG00020017726) #14	EED (ENSCAFG00020017721) #17	HIKESHI (ENSCAFG00020017719) #18	CCDC81 (ENSCAFG00020017715) #19	ENSCAFG00020017713 #20	ME3 (ENSCAFG00020017304) #21	ENSCAFG00020017269	PRSS23 (ENSCAFG00020017267) #22	FZD4 (ENSCAFG00020017261) #23	TMEM135 (ENSCAFG00020017038) #24	RAB38 (ENSCAFG00020017027)	ENSCAFG00020016953	GRM5 (ENSCAFG00020016867)	TYR (ENSCAFG00020016835)	NOX4 (ENSCAFG00020016814)	FOLH1 (ENSCAFG00020016805)	ENSCAFG00020016778	TRIM77 (ENSCAFG00020016740)	ENSCAFG00020016712	NAALAD2 (ENSCAFG00020016699)	CHORDC1 (ENSCAFG00020016695)	ENSCAFG00020016685	ENSCAFG00020016674
Red fox	MODERN SPECIES	109	ENSVVUG00000017562	TMEM126B (ENSVVUG00000017564) #9	ENSVVUG00000017568	TMEM126A (ENSVVUG00000017574) #10	CREBZF (ENSVVUG00000017577) #11	CCDC89 (ENSVVUG00000017579)	SYTL2 (ENSVVUG00000017582) #12	ENSVVUG00000017599	CCDC83 (ENSVVUG00000017603) #13	ENSVVUG00000017613	PICALM (ENSVVUG00000017626) #14	EED (ENSVVUG00000017672) #17	HIKESHI (ENSVVUG00000017683) #18	CCDC81 (ENSVVUG00000017688) #19	ME3 (ENSVVUG00000017722) #21	PRSS23 (ENSVVUG00000018688) #22	FZD4 (ENSVVUG00000018692) #23	TMEM135 (ENSVVUG00000018698) #24	RAB38 (ENSVVUG00000018733)	CTSC (ENSVVUG00000018738)	GRM5 (ENSVVUG00000018755)	TYR (ENSVVUG00000018778)	NOX4 (ENSVVUG00000018823)
Felidae	ANCESTRAL SPECIES		ENSGT01030000234954	ENSGT00520000055616.b #9	ENSGT00520000055616.a.q.b #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00900000143390	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409	ENSGT00940000160005.B	ENSGT00940000163778	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981
Panthera	ANCESTRAL SPECIES	23	ENSGT01030000234954	ENSGT00520000055616.b #9	ENSGT00520000055616.a.q.b #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00900000143390	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409	ENSGT00940000160005.B	ENSGT00940000163778	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981
Tiger	MODERN SPECIES	123	CCDC90B (ENSPTIG00000010203)	ENSPTIG00000010312	ENSPTIG00000010529	TMEM126B (ENSPTIG00000011015) #9	ENSPTIG00000011055 #10	ENSPTIG00000011085	CCDC89 (ENSPTIG00000009905)	ENSPTIG00000011280 #12	CCDC83 (ENSPTIG00000012014) #13	ENSPTIG00000009913	PICALM (ENSPTIG00000012288) #14	EED (ENSPTIG00000012760) #17	HIKESHI (ENSPTIG00000012915) #18	CCDC81 (ENSPTIG00000013106) #19	ME3 (ENSPTIG00000013285) #21	PRSS23 (ENSPTIG00000009955) #22	FZD4 (ENSPTIG00000013786) #23	TMEM135 (ENSPTIG00000013833) #24	RAB38 (ENSPTIG00000014043)	CTSC (ENSPTIG00000014202)	GRM5 (ENSPTIG00000014395)	TYR (ENSPTIG00000014539)	NOX4 (ENSPTIG00000015391)	FOLH1 (ENSPTIG00000016704)	ENSPTIG00000017086	ENSPTIG00000017277	TRIM77 (ENSPTIG00000017304)	UBTFL1 (ENSPTIG00000009976)	NAALAD2 (ENSPTIG00000017405)	CHORDC1 (ENSPTIG00000017806)	ENSPTIG00000017905
Panthera_a	ANCESTRAL SPECIES	24	ENSGT01030000234954	ENSGT00520000055616.b #9	ENSGT00520000055616.a.q.b #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00900000143390	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409	ENSGT00940000160005.B	ENSGT00940000163778	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981
lion	MODERN SPECIES	10	ENSPLOG00000019612	ENSPLOG00000019583	TMEM126B (ENSPLOG00000019541) #9	ENSPLOG00000019486 #10	CREBZF (ENSPLOG00000019442) #11	CCDC89 (ENSPLOG00000019413)	SYTL2 (ENSPLOG00000019183) #12	CCDC83 (ENSPLOG00000019073) #13	PICALM (ENSPLOG00000018802) #14	EED (ENSPLOG00000018287) #17	HIKESHI (ENSPLOG00000018145) #18	CCDC81 (ENSPLOG00000017860) #19	ENSPLOG00000017816 #20	ME3 (ENSPLOG00000017730) #21	ENSPLOG00000017695	PRSS23 (ENSPLOG00000017679) #22	FZD4 (ENSPLOG00000017652) #23	TMEM135 (ENSPLOG00000017505) #24	RAB38 (ENSPLOG00000017440)	CTSC (ENSPLOG00000017389)	GRM5 (ENSPLOG00000017218)	TYR (ENSPLOG00000017151)	NOX4 (ENSPLOG00000016100)	FOLH1 (ENSPLOG00000015364)	ENSPLOG00000015181	ENSPLOG00000014641	TRIM77 (ENSPLOG00000014478)	ENSPLOG00000014439	NAALAD2 (ENSPLOG00000014022)	CHORDC1 (ENSPLOG00000013727)	FAT3 (ENSPLOG00000013276)
leopard	MODERN SPECIES	17	ENSPPRG00000012171	ENSPPRG00000010067	TMEM126B (ENSPPRG00000005529) #9	ENSPPRG00000005013 #10	ENSPPRG00000004597	CCDC89 (ENSPPRG00000016516)	ENSPPRG00000004036 #12	CCDC83 (ENSPPRG00000018265) #13	ENSPPRG00000016079	PICALM (ENSPPRG00000015638) #14	ENSPPRG00000015994	EED (ENSPPRG00000012039) #17	HIKESHI (ENSPPRG00000010865) #18	CCDC81 (ENSPPRG00000009583) #19	ME3 (ENSPPRG00000008336) #21	PRSS23 (ENSPPRG00000015765) #22	FZD4 (ENSPPRG00000004892) #23	TMEM135 (ENSPPRG00000004298) #24	RAB38 (ENSPPRG00000002670)	CTSC (ENSPPRG00000002465)	GRM5 (ENSPPRG00000001606)	TYR (ENSPPRG00000001016)	NOX4 (ENSPPRG00000000522)	FOLH1 (ENSPPRG00000017997)	ENSPPRG00000013571	TRIM77 (ENSPPRG00000012936)	UBTFL1 (ENSPPRG00000015347)	NAALAD2 (ENSPPRG00000012456)	CHORDC1 (ENSPPRG00000009494)	ENSPPRG00000008409	FAT3 (ENSPPRG00000007707)
Laurasiatheria_c	ANCESTRAL SPECIES	9	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409	ENSGT00940000163858	ENSGT00940000163440	ENSGT00940000160005.A	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981
Chiroptera	ANCESTRAL SPECIES	5	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409	ENSGT00940000160005.A	ENSGT00940000163440	ENSGT00940000163858	ENSGT00940000163778	ENSGT00940000160005.B	ENSGT01030000234598.b.a.b.k.b
Microchiroptera	ANCESTRAL SPECIES	2	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409	ENSGT00940000163858	ENSGT00940000163440	ENSGT00940000160005.A	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00390000002414.ob
Greater horseshoe bat	MODERN SPECIES	2	ENSRFEG00010012064	TMEM126B (ENSRFEG00010012127) #9	TMEM126A (ENSRFEG00010012220) #10	CREBZF (ENSRFEG00010012287) #11	CCDC89 (ENSRFEG00010012330)	SYTL2 (ENSRFEG00010012365) #12	ENSRFEG00010012812 #13	PICALM (ENSRFEG00010012989) #14	EED (ENSRFEG00010013379) #17	ENSRFEG00010013602	HIKESHI (ENSRFEG00010013658) #18	ENSRFEG00010013854	CCDC81 (ENSRFEG00010013935) #19	ME3 (ENSRFEG00010014578) #21	ENSRFEG00010014821	PRSS23 (ENSRFEG00010014842) #22	FZD4 (ENSRFEG00010014860) #23	ENSRFEG00010014879	TMEM135 (ENSRFEG00010014945) #24	RAB38 (ENSRFEG00010015300)	CTSC (ENSRFEG00010015349)	GRM5 (ENSRFEG00010015430)	TYR (ENSRFEG00010015497)	NOX4 (ENSRFEG00010015643)	FOLH1 (ENSRFEG00010017343)	ENSRFEG00010017811	ENSRFEG00010017886	ENSRFEG00010017954	ENSRFEG00010018032	TRIM77 (ENSRFEG00010018089)	ENSRFEG00010018158
Microbat	MODERN SPECIES	1043				ENSMLUG00000008469	TMEM126B (ENSMLUG00000005891) #9	TMEM126A (ENSMLUG00000005896) #10	CCDC89 (ENSMLUG00000005906)	ENSMLUG00000005910 #12	CCDC83 (ENSMLUG00000005923) #13	PICALM (ENSMLUG00000005936) #14	ENSMLUG00000026711	EED (ENSMLUG00000014688) #17	HIKESHI (ENSMLUG00000016260) #18	CCDC81 (ENSMLUG00000001952) #19	ME3 (ENSMLUG00000001964) #21	PRSS23 (ENSMLUG00000001979) #22	FZD4 (ENSMLUG00000009453) #23	ENSMLUG00000029442 #24	ENSMLUG00000008814 #24	RAB38 (ENSMLUG00000010537)	CTSC (ENSMLUG00000010550)	GRM5 (ENSMLUG00000016200)	ENSMLUG00000024818	TYR (ENSMLUG00000016206)	NOX4 (ENSMLUG00000016907)	ENSMLUG00000025886	FOLH1 (ENSMLUG00000008308)	ENSMLUG00000023565	ENSMLUG00000026777	ENSMLUG00000004811	ENSMLUG00000024107
Equus	ANCESTRAL SPECIES	15	ENSGT00940000163242.b.a	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00900000143351	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00940000168933	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409	ENSGT00940000163440	ENSGT00940000163858	ENSGT00940000160005.A	ENSGT00940000160005.B	ENSGT01030000234598.b.a.b.k.b
Donkey	MODERN SPECIES	12	ENSEASG00005024412	ENSEASG00005012741	DLG2 (ENSEASG00005012722)	TMEM126B (ENSEASG00005024050) #9	TMEM126A (ENSEASG00005023675) #10	CREBZF (ENSEASG00005030453) #11	CCDC89 (ENSEASG00005012696)	SYTL2 (ENSEASG00005012693) #12	CCDC83 (ENSEASG00005012690) #13	PICALM (ENSEASG00005012685) #14	EED (ENSEASG00005012683) #17	HIKESHI (ENSEASG00005012681) #18	CCDC81 (ENSEASG00005012679) #19	ENSEASG00005038186 #20	ME3 (ENSEASG00005012671) #21	PRSS23 (ENSEASG00005035692) #22	FZD4 (ENSEASG00005012666) #23	ENSEASG00005012664	TMEM135 (ENSEASG00005012663) #24	RAB38 (ENSEASG00005025963)	CTSC (ENSEASG00005027690)	ENSEASG00005032755	ENSEASG00005012648	GRM5 (ENSEASG00005012645)	TYR (ENSEASG00005012641)	ENSEASG00005012636	ENSEASG00005012629	ENSEASG00005012622	ENSEASG00005035530	ENSEASG00005012599	ENSEASG00005012578
Horse	MODERN SPECIES	28	DLG2 (ENSECAG00000013426)	TMEM126B (ENSECAG00000010871) #9	TMEM126A (ENSECAG00000010580) #10	CREBZF (ENSECAG00000051993) #11	CCDC89 (ENSECAG00000005713)	SYTL2 (ENSECAG00000006803) #12	CCDC83 (ENSECAG00000023925) #13	PICALM (ENSECAG00000019264) #14	EED (ENSECAG00000016295) #17	ENSECAG00000059054 #18	HIKESHI (ENSECAG00000049412) #18	CCDC81 (ENSECAG00000015265) #19	ENSECAG00000005619 #20	ENSECAG00000027950	ME3 (ENSECAG00000007798) #21	PRSS23 (ENSECAG00000005563) #22	FZD4 (ENSECAG00000030065) #23	ENSECAG00000059232	ENSECAG00000051350	ENSECAG00000003430	ENSECAG00000044202	TMEM135 (ENSECAG00000007648) #24	RAB38 (ENSECAG00000001775)	CTSC (ENSECAG00000020881)	ENSECAG00000020876	GRM5 (ENSECAG00000018967)	TYR (ENSECAG00000016425)	NOX4 (ENSECAG00000010054)	FOLH1 (ENSECAG00000022737)	ENSECAG00000052300	ENSECAG00000045892
Artiodactyla	ANCESTRAL SPECIES	1	ENSGT01030000234954	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00900000143390	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00940000169935	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163440	ENSGT00940000160005.A	ENSGT00940000162409	ENSGT00940000160005.B	ENSGT00940000163858	ENSGT00940000163778
Suina	ANCESTRAL SPECIES	5	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000160005.A	ENSGT00940000162409	ENSGT00940000163440	ENSGT00940000160005.B	ENSGT00940000163858	ENSGT00940000163778	ENSGT01030000234598.b.a.b.k.b
Chacoan peccary	MODERN SPECIES	31	CCDC90B (ENSCWAG00000015330)	DLG2 (ENSCWAG00000005957)	TMEM126B (ENSCWAG00000005630) #9	TMEM126A (ENSCWAG00000005609) #10	CREBZF (ENSCWAG00000005594) #11	CCDC89 (ENSCWAG00000005581)	SYTL2 (ENSCWAG00000005345) #12	CCDC83 (ENSCWAG00000005253) #13	PICALM (ENSCWAG00000005113) #14	EED (ENSCWAG00000004971) #17	HIKESHI (ENSCWAG00000004933) #18	CCDC81 (ENSCWAG00000004701) #19	ENSCWAG00000004652 #20	ME3 (ENSCWAG00000004613) #21	ENSCWAG00000004584	PRSS23 (ENSCWAG00000004567) #22	FZD4 (ENSCWAG00000004556) #23
Pig	MODERN SPECIES	17	TMEM126B (ENSSSCG00000014905) #9	TMEM126A (ENSSSCG00000025187) #10	CREBZF (ENSSSCG00000014907) #11	CCDC89 (ENSSSCG00000062997)	SYTL2 (ENSSSCG00000014909) #12	ENSSSCG00000059638	ENSSSCG00000014911	CCDC83 (ENSSSCG00000014912) #13	PICALM (ENSSSCG00000014913) #14	EED (ENSSSCG00000014915) #17	HIKESHI (ENSSSCG00000021210) #18	CCDC81 (ENSSSCG00000014917) #19	ENSSSCG00000047749	ENSSSCG00000014918 #20	ME3 (ENSSSCG00000014919) #21	PRSS23 (ENSSSCG00000014921) #22	FZD4 (ENSSSCG00000014920) #23	TMEM135 (ENSSSCG00000035619) #24	RAB38 (ENSSSCG00000033878)	CTSC (ENSSSCG00000014924)	GRM5 (ENSSSCG00000029865)	ENSSSCG00000052702	TYR (ENSSSCG00000026409)	NOX4 (ENSSSCG00000014927)	FOLH1B (ENSSSCG00000027093)	ENSSSCG00000028810	ENSSSCG00000038588	ENSSSCG00000046061	ENSSSCG00000014931	ENSSSCG00000014930	ENSSSCG00000049020
Artiodactyla_a	ANCESTRAL SPECIES	1	ENSGT01030000234954	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00900000143390	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00940000169935	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163440	ENSGT00940000160005.A	ENSGT00940000162409	ENSGT00940000160005.B	ENSGT00940000163858	ENSGT00940000163778
Camelidae	ANCESTRAL SPECIES	32	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163440	ENSGT00940000160005.B	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341
Arabian camel	MODERN SPECIES	1	ENSCDRG00005000387	DLG2 (ENSCDRG00005000832)	TMEM126B (ENSCDRG00005005932) #9	ENSCDRG00005005974 #10	CREBZF (ENSCDRG00005006000) #11	ENSCDRG00005006034	CCDC89 (ENSCDRG00005006041)	SYTL2 (ENSCDRG00005006073) #12	CCDC83 (ENSCDRG00005006299) #13	PICALM (ENSCDRG00005006440) #14	EED (ENSCDRG00005007103) #17	HIKESHI (ENSCDRG00005007926) #18	CCDC81 (ENSCDRG00005008087) #19	ENSCDRG00005008636	ME3 (ENSCDRG00005008675) #21	PRSS23 (ENSCDRG00005008761) #22	FZD4 (ENSCDRG00005008783) #23	TMEM135 (ENSCDRG00005008846) #24	RAB38 (ENSCDRG00005009241)	CTSC (ENSCDRG00005009321)	GRM5 (ENSCDRG00005009561)	TYR (ENSCDRG00005009674)	NOX4 (ENSCDRG00005009765)	FOLH1 (ENSCDRG00005010235)	ENSCDRG00005010410	ENSCDRG00005010499	ENSCDRG00005011110	UBTFL1 (ENSCDRG00005011226)	NAALAD2 (ENSCDRG00005011284)	CHORDC1 (ENSCDRG00005011505)	FAT3 (ENSCDRG00005011626)
Artiodactyla_b	ANCESTRAL SPECIES	1	ENSGT01030000234954	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00900000143390	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00940000169935	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163440	ENSGT00940000160005.A	ENSGT00940000162409	ENSGT00940000160005.B	ENSGT00940000163858	ENSGT00940000163778
Pecora	ANCESTRAL SPECIES	13	ENSGT01030000234954	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00900000143390	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409.k.b	ENSGT00940000163440	ENSGT00940000162409.k.a.a.b	ENSGT00940000163858.f	ENSGT00940000162409.l	ENSGT00940000160005.A	ENSGT00940000163858.e.a.a
Percora_a	ANCESTRAL SPECIES	16	ENSGT01030000234954	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00900000143390	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409.k.b	ENSGT00940000162409.k.a.b	ENSGT00940000160005.A.q	ENSGT00940000163778	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981
Bovidae	ANCESTRAL SPECIES	16	ENSGT01030000234954	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00900000143390	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00960000192014	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409.k.b	ENSGT00940000163440	ENSGT00940000160005.A.r	ENSGT00940000162409.k.a.a.b	ENSGT00940000163858.f	ENSGT00940000163858.e.a.a
Caprinae	ANCESTRAL SPECIES	29	ENSGT01030000234954	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00900000143390	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00960000192014	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163858.e.a.a	ENSGT00940000163778	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162741.i.b
Rambouillet Sheep	MODERN SPECIES	13	ENSOARG00020024175	DLG2 (ENSOARG00020016002)	TMEM126B (ENSOARG00020015676) #9	TMEM126A (ENSOARG00020015625) #10	CREBZF (ENSOARG00020015588) #11	CCDC89 (ENSOARG00020015557)	SYTL2 (ENSOARG00020014519) #12	ENSOARG00020014438	ENSOARG00020014330 #13	PICALM (ENSOARG00020013638) #14	EED (ENSOARG00020012861) #17	HIKESHI (ENSOARG00020012706) #18	ENSOARG00020018700 #20	ME3 (ENSOARG00020018621) #21	ENSOARG00020018554	PRSS23 (ENSOARG00020018547) #22	FZD4 (ENSOARG00020018518) #23	TMEM135 (ENSOARG00020018240) #24	ENSOARG00020018155	RAB38 (ENSOARG00020018125)	CTSC (ENSOARG00020017978)	ENSOARG00020017848	ENSOARG00020017819	TYR (ENSOARG00020017770)	NOX4 (ENSOARG00020017262)	ENSOARG00020017199	ENSOARG00020017116	ENSOARG00020017033	ENSOARG00020016966	ENSOARG00020016920	ENSOARG00020016819
Goat	MODERN SPECIES	21	ENSCHIG00000009761	ENSCHIG00000021811	TMEM126B (ENSCHIG00000013101) #9	ENSCHIG00000026099 #10	CREBZF (ENSCHIG00000005919) #11	CCDC89 (ENSCHIG00000004366)	ENSCHIG00000019092 #12	CCDC83 (ENSCHIG00000013675) #13	ENSCHIG00000022640	PICALM (ENSCHIG00000015634) #14	EED (ENSCHIG00000015509) #17	HIKESHI (ENSCHIG00000023660) #18	CCDC81 (ENSCHIG00000016243) #19	ENSCHIG00000002265 #20	ME3 (ENSCHIG00000014285) #21	PRSS23 (ENSCHIG00000010056) #22	FZD4 (ENSCHIG00000026211) #23	ENSCHIG00000019838 #24	ENSCHIG00000013504 #24	RAB38 (ENSCHIG00000024276)	CTSC (ENSCHIG00000013901)	GRM5 (ENSCHIG00000015813)	ENSCHIG00000023687	TYR (ENSCHIG00000004892)	NOX4 (ENSCHIG00000021611)	FOLH1 (ENSCHIG00000013522)	ENSCHIG00000023324	TRIM77 (ENSCHIG00000019554)	NAALAD2 (ENSCHIG00000017338)	CHORDC1 (ENSCHIG00000013507)	ENSCHIG00000010579
Bovinae	ANCESTRAL SPECIES	27	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00960000192014	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409.k.b	ENSGT00940000162409.k.a.a.a.a	ENSGT00940000160005.A.r	ENSGT00940000162409.k.a.a.b	ENSGT00940000163858.f	ENSGT00940000163440
Bos	ANCESTRAL SPECIES	11	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.a.b	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409.k.b	ENSGT00940000162409.k.a.a.a.a	ENSGT00940000160005.A.r	ENSGT00940000162409.k.a.a.b	ENSGT00940000163858.f	ENSGT00940000163440
Bos_b	ANCESTRAL SPECIES	10	ENSGT00940000155156.b	ENSGT01000000214875	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.a.b	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409.k.b	ENSGT00940000162409.k.a.a.a.a	ENSGT01030000234531.A.b.b.b.i.a.a.a.b.b.b.a	ENSGT00940000163858.f	ENSGT00940000162409.k.a.a.b.d	ENSGT00940000160005.A.r
Hybrid Bos Indicus	MODERN SPECIES	21	ENSBIXG00005007506	ENSBIXG00005015966	TMEM126B (ENSBIXG00005006137) #9	TMEM126A (ENSBIXG00005015931) #10	CREBZF (ENSBIXG00005015909) #11	CCDC89 (ENSBIXG00005002504)	ENSBIXG00005015861 #12	CCDC83 (ENSBIXG00005015679) #13	PICALM (ENSBIXG00005015588) #14	EED (ENSBIXG00005015358) #17	HIKESHI (ENSBIXG00005015272) #18	CCDC81 (ENSBIXG00005015221) #19	ENSBIXG00005015176 #20	ME3 (ENSBIXG00005015127) #21	ENSBIXG00005006228	PRSS23 (ENSBIXG00005015048) #22	FZD4 (ENSBIXG00005002201) #23	TMEM135 (ENSBIXG00005007500) #24	ENSBIXG00005014836	ENSBIXG00005006132	ENSBIXG00005014818	RAB38 (ENSBIXG00005014802)	CTSC (ENSBIXG00005005707)	ENSBIXG00005014734	ENSBIXG00005002053	ENSBIXG00005014663	TYR (ENSBIXG00005014637)	NOX4 (ENSBIXG00005014595)	ENSBIXG00005014428	ENSBIXG00005014401	ENSBIXG00005014349
Cow	MODERN SPECIES	21	ENSBTAG00000048705	DLG2 (ENSBTAG00000027868)	ENSBTAG00000053418	TMEM126B (ENSBTAG00000020596) #9	TMEM126A (ENSBTAG00000000451) #10	CREBZF (ENSBTAG00000000455) #11	CCDC89 (ENSBTAG00000000457)	SYTL2 (ENSBTAG00000000460) #12	CCDC83 (ENSBTAG00000011132) #13	PICALM (ENSBTAG00000001657) #14	EED (ENSBTAG00000007847) #17	HIKESHI (ENSBTAG00000019995) #18	CCDC81 (ENSBTAG00000020009) #19	ENSBTAG00000046374 #20	ME3 (ENSBTAG00000000246) #21	PRSS23 (ENSBTAG00000015177) #22	FZD4 (ENSBTAG00000040128) #23	TMEM135 (ENSBTAG00000005482) #24	ENSBTAG00000050697	ENSBTAG00000049723	RAB38 (ENSBTAG00000015793)	CTSC (ENSBTAG00000011100)	ENSBTAG00000034845	GRM5 (ENSBTAG00000048061)	TYR (ENSBTAG00000011813)	NOX4 (ENSBTAG00000018540)	FOLH1B (ENSBTAG00000007397)	ENSBTAG00000039825	ENSBTAG00000038169	ENSBTAG00000048802	ENSBTAG00000049646
Bos_a	ANCESTRAL SPECIES	66	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.a.b	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409.k.b	ENSGT00940000163440
Domestic yak	MODERN SPECIES	21	ENSBGRG00000024005	ENSBGRG00000024013	TMEM126B (ENSBGRG00000024037) #9	ENSBGRG00000024097 #10	CREBZF (ENSBGRG00000024210) #11	CCDC89 (ENSBGRG00000024223)	ENSBGRG00000024253 #12	CCDC83 (ENSBGRG00000024540) #13	PICALM (ENSBGRG00000024679) #14	EED (ENSBGRG00000025126) #17	HIKESHI (ENSBGRG00000025330) #18	CCDC81 (ENSBGRG00000025357) #19	ME3 (ENSBGRG00000025466) #21	ENSBGRG00000025555 #20	ENSBGRG00000025562	PRSS23 (ENSBGRG00000025570) #22	FZD4 (ENSBGRG00000025585) #23	TMEM135 (ENSBGRG00000025613) #24	RAB38 (ENSBGRG00000025707)	CTSC (ENSBGRG00000025732)	GRM5 (ENSBGRG00000025754)	ENSBGRG00000025770	ENSBGRG00000025774	ENSBGRG00000013459	NOX4 (ENSBGRG00000013584)	FOLH1 (ENSBGRG00000013892)	ENSBGRG00000014481	ENSBGRG00000014529	ENSBGRG00000014600	ENSBGRG00000014816	ENSBGRG00000014845
American bison	MODERN SPECIES	3238	DLG2 (ENSBBBG00000007047)	ENSBBBG00000008368	ENSBBBG00000008951	ENSBBBG00000020046 #9	TMEM126A (ENSBBBG00000005096) #10	CREBZF (ENSBBBG00000005090) #11	CCDC89 (ENSBBBG00000005086)	ENSBBBG00000020192 #12	CCDC83 (ENSBBBG00000005453) #13	PICALM (ENSBBBG00000006910) #14	EED (ENSBBBG00000000678) #17	HIKESHI (ENSBBBG00000000640) #18	CCDC81 (ENSBBBG00000000571) #19	ENSBBBG00000000561 #20	ME3 (ENSBBBG00000000531) #21	PRSS23 (ENSBBBG00000000524) #22	FZD4 (ENSBBBG00000005521) #23
Siberian musk deer	MODERN SPECIES	334		DLG2 (ENSMMSG00000012131)	TMEM126B (ENSMMSG00000011791) #9	TMEM126A (ENSMMSG00000011765) #10	CREBZF (ENSMMSG00000011747) #11	CCDC89 (ENSMMSG00000011737)	ENSMMSG00000011390 #12	CCDC83 (ENSMMSG00000011291) #13	PICALM (ENSMMSG00000010915) #14	EED (ENSMMSG00000010761) #17	HIKESHI (ENSMMSG00000010677) #18	CCDC81 (ENSMMSG00000010200) #19	ENSMMSG00000010151	ENSMMSG00000010131	ME3 (ENSMMSG00000010096) #21	PRSS23 (ENSMMSG00000010081) #22	FZD4 (ENSMMSG00000010064) #23	TMEM135 (ENSMMSG00000009825) #24	RAB38 (ENSMMSG00000009772)	CTSC (ENSMMSG00000009733)	GRM5 (ENSMMSG00000009613)	TYR (ENSMMSG00000009581)	NOX4 (ENSMMSG00000009089)	FOLH1 (ENSMMSG00000008725)	ENSMMSG00000008663	ENSMMSG00000008585	ENSMMSG00000008564	ENSMMSG00000008520	ENSMMSG00000008487	ENSMMSG00000008465	ENSMMSG00000008439
Yarkand deer	MODERN SPECIES	11	TMEM126B (ENSCHYG00000002757) #9	ENSCHYG00000002743 #10	CREBZF (ENSCHYG00000002736) #11	CCDC89 (ENSCHYG00000002726)	ENSCHYG00000002641 #12	ENSCHYG00000002613	ENSCHYG00000002584 #13	PICALM (ENSCHYG00000001855) #14	EED (ENSCHYG00000001672) #17	HIKESHI (ENSCHYG00000001630) #18	CCDC81 (ENSCHYG00000001578) #19	ENSCHYG00000001557 #20	ENSCHYG00000001541	ENSCHYG00000001536	ME3 (ENSCHYG00000001420) #21	PRSS23 (ENSCHYG00000001379) #22	FZD4 (ENSCHYG00000001366) #23	TMEM135 (ENSCHYG00000001269) #24	RAB38 (ENSCHYG00000001226)	CTSC (ENSCHYG00000001169)	ENSCHYG00000001133	GRM5 (ENSCHYG00000000979)	TYR (ENSCHYG00000000943)	NOX4 (ENSCHYG00000000830)	FOLH1 (ENSCHYG00000000623)	ENSCHYG00000000558	ENSCHYG00000000527	ENSCHYG00000000475	ENSCHYG00000000439	TRIM77 (ENSCHYG00000000430)	NAALAD2 (ENSCHYG00000000349)
Cetacea	ANCESTRAL SPECIES	4	ENSGT00940000155156.b	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00940000169935	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163440.g	ENSGT00940000162409	ENSGT00940000160005.A	ENSGT00940000163778	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174
Odontoceti	ANCESTRAL SPECIES	4	ENSGT00940000155156.b	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000010283.k.b	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00940000169935	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409.i	ENSGT00940000163858	ENSGT00940000162409.j	ENSGT00940000160005.A	ENSGT00940000163778
Odontoceti_a	ANCESTRAL SPECIES	4	ENSGT00940000154216.a	ENSGT00940000155453.k.a	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a.m.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000010283.k.b	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00940000169935	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409.i	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341
Dolphin	MODERN SPECIES	1901												EED (ENSTTRG00000012266) #17	HIKESHI (ENSTTRG00000012267) #18	CCDC81 (ENSTTRG00000012268) #19	ME3 (ENSTTRG00000012269) #21	PRSS23 (ENSTTRG00000012270) #22
Odontoceti_b	ANCESTRAL SPECIES	4	ENSGT00940000154216.a	ENSGT00940000155453.k.a	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a.m.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000010283.k.b	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00940000169935	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409.i	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341
Monodontidae	ANCESTRAL SPECIES	2	ENSGT00940000154216.a	ENSGT00940000155453.k.a	ENSGT00940000155156.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a.m.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00940000164723 #20	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409.i	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117	ENSGT00940000153190.B.a
Beluga whale	MODERN SPECIES	2	ENSDLEG00000002798	ENSDLEG00000002802	DLG2 (ENSDLEG00000002821)	ENSDLEG00000002911	TMEM126B (ENSDLEG00000002918) #9	ENSDLEG00000002926 #10	CREBZF (ENSDLEG00000002931) #11	CCDC89 (ENSDLEG00000002938)	ENSDLEG00000002956 #12	CCDC83 (ENSDLEG00000002970) #13	PICALM (ENSDLEG00000002993) #14	EED (ENSDLEG00000003117) #17	HIKESHI (ENSDLEG00000003141) #18	CCDC81 (ENSDLEG00000003163) #19	ME3 (ENSDLEG00000003198) #21	PRSS23 (ENSDLEG00000003208) #22	FZD4 (ENSDLEG00000003217) #23	ENSDLEG00000003221	TMEM135 (ENSDLEG00000003226) #24	RAB38 (ENSDLEG00000003249)	CTSC (ENSDLEG00000003257)	GRM5 (ENSDLEG00000003265)	TYR (ENSDLEG00000003283)	NOX4 (ENSDLEG00000003303)	FOLH1 (ENSDLEG00000003393)	ENSDLEG00000003772
Narwhal	MODERN SPECIES	314	ANKRD42 (ENSMMNG00015017078)	CCDC90B (ENSMMNG00015017033)	DLG2 (ENSMMNG00015015492)	TMEM126B (ENSMMNG00015015104) #9	ENSMMNG00015015089 #10	CREBZF (ENSMMNG00015015075) #11	CCDC89 (ENSMMNG00015015061)	ENSMMNG00015015000 #12	CCDC83 (ENSMMNG00015014970) #13	PICALM (ENSMMNG00015014880) #14	EED (ENSMMNG00015014804) #17	HIKESHI (ENSMMNG00015014769) #18	CCDC81 (ENSMMNG00015014732) #19	ENSMMNG00015014700 #20	ME3 (ENSMMNG00015014679) #21	PRSS23 (ENSMMNG00015014667) #22	FZD4 (ENSMMNG00015014656) #23	TMEM135 (ENSMMNG00015014607) #24	RAB38 (ENSMMNG00015014573)	CTSC (ENSMMNG00015014542)	GRM5 (ENSMMNG00015014498)	TYR (ENSMMNG00015014453)	NOX4 (ENSMMNG00015021151)	NAALAD2 (ENSMMNG00015020956)	CHORDC1 (ENSMMNG00015020880)	FAT3 (ENSMMNG00015020732)	MTNR1B (ENSMMNG00015020672)	SLC36A4 (ENSMMNG00015020630)	DEUP1 (ENSMMNG00015020581)	SMCO4 (ENSMMNG00015020556)	ENSMMNG00015020542
Vaquita	MODERN SPECIES	19	ANKRD42 (ENSPSNG00000021372)	ENSPSNG00000021348	DLG2 (ENSPSNG00000019221)	TMEM126B (ENSPSNG00000018567) #9	ENSPSNG00000018507 #10	CREBZF (ENSPSNG00000018478) #11	CCDC89 (ENSPSNG00000018454)	ENSPSNG00000018339 #12	CCDC83 (ENSPSNG00000018191) #13	PICALM (ENSPSNG00000017970) #14	EED (ENSPSNG00000017804) #17	HIKESHI (ENSPSNG00000017703) #18	CCDC81 (ENSPSNG00000017515) #19	ENSPSNG00000017457 #20	ME3 (ENSPSNG00000017348) #21	PRSS23 (ENSPSNG00000017307) #22	FZD4 (ENSPSNG00000017272) #23	ENSPSNG00000017225	TMEM135 (ENSPSNG00000017021) #24	RAB38 (ENSPSNG00000016956)	CTSC (ENSPSNG00000016884)	GRM5 (ENSPSNG00000016691)	TYR (ENSPSNG00000016603)	NOX4 (ENSPSNG00000016374)	ENSPSNG00000016293	ENSPSNG00000015989	ENSPSNG00000015913	ENSPSNG00000015854	NAALAD2 (ENSPSNG00000015587)	CHORDC1 (ENSPSNG00000015361)	FAT3 (ENSPSNG00000015176)
Sperm whale	MODERN SPECIES	7	CCDC90B (ENSPCTG00005010220)	DLG2 (ENSPCTG00005008716)	ENSPCTG00005008523	ENSPCTG00005008505	TMEM126B (ENSPCTG00005008472) #9	TMEM126A (ENSPCTG00005008442) #10	CCDC89 (ENSPCTG00005008392)	SYTL2 (ENSPCTG00005008215) #12	CCDC83 (ENSPCTG00005008113) #13	PICALM (ENSPCTG00005007605) #14	EED (ENSPCTG00005007433) #17	HIKESHI (ENSPCTG00005007380) #18	CCDC81 (ENSPCTG00005007322) #19	ENSPCTG00005007298 #20	ME3 (ENSPCTG00005007233) #21	PRSS23 (ENSPCTG00005007213) #22	FZD4 (ENSPCTG00005007199) #23	ENSPCTG00005007172	TMEM135 (ENSPCTG00005007056) #24	ENSPCTG00005007024	ENSPCTG00005007012	RAB38 (ENSPCTG00005007000)	CTSC (ENSPCTG00005006945)	GRM5 (ENSPCTG00005006847)	TYR (ENSPCTG00005006804)	NOX4 (ENSPCTG00005006689)	FOLH1B (ENSPCTG00005006376)	ENSPCTG00005006321	ENSPCTG00005006291	ENSPCTG00005006039	ENSPCTG00005005824
Blue whale	MODERN SPECIES	19	ANKRD42 (ENSBMSG00010005024)	CCDC90B (ENSBMSG00010005013)	ENSBMSG00010005009	DLG2 (ENSBMSG00010002552)	TMEM126B (ENSBMSG00010001999) #9	TMEM126A (ENSBMSG00010001985) #10	CREBZF (ENSBMSG00010001973) #11	CCDC89 (ENSBMSG00010001966)	SYTL2 (ENSBMSG00010001898) #12	CCDC83 (ENSBMSG00010001838) #13	PICALM (ENSBMSG00010001786) #14	EED (ENSBMSG00010001736) #17	HIKESHI (ENSBMSG00010001721) #18	CCDC81 (ENSBMSG00010001642) #19	ME3 (ENSBMSG00010001610) #21	PRSS23 (ENSBMSG00010001597) #22	FZD4 (ENSBMSG00010001591) #23	ENSBMSG00010001482 #24	RAB38 (ENSBMSG00010001436)	CTSC (ENSBMSG00010001420)	GRM5 (ENSBMSG00010001371)	TYR (ENSBMSG00010001331)	NOX4 (ENSBMSG00010000676)	FOLH1 (ENSBMSG00010000460)	ENSBMSG00010000378	ENSBMSG00010000367	ENSBMSG00010000341	ENSBMSG00010000316	ENSBMSG00010000282	TRIM77 (ENSBMSG00010008740)	NAALAD2 (ENSBMSG00010008680)
Atlantogenata	ANCESTRAL SPECIES	35	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00940000155156.a.b	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000160005.B	ENSGT00940000160005.A	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162741.i.b
Xenarthra	ANCESTRAL SPECIES																	ENSGT00390000000155.a.a #22
Armadillo	MODERN SPECIES	4364																PRSS23 (ENSDNOG00000007900) #22
Afrotheria	ANCESTRAL SPECIES	41	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000160005.B	ENSGT00940000160005.A	ENSGT00940000163858
Afrotheria_a	ANCESTRAL SPECIES	120	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a
Elephant	MODERN SPECIES	486	PCF11 (ENSLAFG00000000623)	ANKRD42 (ENSLAFG00000021802)	ENSLAFG00000015417	ENSLAFG00000010836	ENSLAFG00000030347	TMEM126A (ENSLAFG00000022847) #10	CREBZF (ENSLAFG00000014649) #11	CCDC89 (ENSLAFG00000017161)	ENSLAFG00000023353 #12	ENSLAFG00000000753 #13	PICALM (ENSLAFG00000000754) #14	EED (ENSLAFG00000002676) #17	HIKESHI (ENSLAFG00000009125) #18	CCDC81 (ENSLAFG00000002978) #19	ME3 (ENSLAFG00000006856) #21	PRSS23 (ENSLAFG00000004876) #22	ENSLAFG00000031157	FZD4 (ENSLAFG00000007383) #23	TMEM135 (ENSLAFG00000000851) #24	RAB38 (ENSLAFG00000032135)	CTSC (ENSLAFG00000000890)	ENSLAFG00000032092	ENSLAFG00000004534	TYR (ENSLAFG00000016209)	NOX4 (ENSLAFG00000016618)	FOLH1 (ENSLAFG00000010953)	ENSLAFG00000023298	ENSLAFG00000011083	ENSLAFG00000025974	ENSLAFG00000026112
Tenrec	MODERN SPECIES	4462																PRSS23 (ENSETEG00000000541) #22
Marsupialia	ANCESTRAL SPECIES	28	ENSGT00940000155156.b.z	ENSGT00940000155156.b.y	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a
Opossum	MODERN SPECIES	3	CCDC90B (ENSMODG00000004456)	ENSMODG00000004436	ENSMODG00000006441	ENSMODG00000045316	ENSMODG00000037216	TMEM126A (ENSMODG00000004384) #10	CREBZF (ENSMODG00000004377) #11	ENSMODG00000004359 #12	ENSMODG00000048166 #12	CCDC83 (ENSMODG00000004311) #13	PICALM (ENSMODG00000004297) #14	EED (ENSMODG00000004253) #17	HIKESHI (ENSMODG00000039483) #18	CCDC81 (ENSMODG00000004183) #19	ME3 (ENSMODG00000004158) #21	PRSS23 (ENSMODG00000041673) #22	FZD4 (ENSMODG00000004102) #23	ENSMODG00000024072	TMEM135 (ENSMODG00000004087) #24	ENSMODG00000035809	ENSMODG00000024094	ENSMODG00000028786	LCP1 (ENSMODG00000011413)	ENSMODG00000011358	ENSMODG00000029107	LRCH1 (ENSMODG00000011348)	ESD (ENSMODG00000011290)	HTR2A (ENSMODG00000011274)	SUCLA2 (ENSMODG00000011236)	ENSMODG00000029176	NUDT15 (ENSMODG00000039008)
Marsupialia_b	ANCESTRAL SPECIES	20	ENSGT00940000155156.b.z	ENSGT00940000155156.b.y	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00950000183097.a.a.b	ENSGT00940000173214	ENSGT00940000173288	ENSGT00940000160585	ENSGT00940000159528	ENSGT00390000011864	ENSGT01050000244937.a.a
Diprotodontia	ANCESTRAL SPECIES	24	ENSGT00940000154216.a	ENSGT00940000155453.ab	ENSGT00940000155156.b.z	ENSGT00940000155156.b.y	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00950000183097.a.a.b	ENSGT00940000173214	ENSGT00940000173288	ENSGT00940000160585	ENSGT00940000159528	ENSGT00390000011864	ENSGT01050000244937.a.a
Diprotodontia_a	ANCESTRAL SPECIES	25	ENSGT00940000154216.a	ENSGT00940000155453.ab	ENSGT00940000155156.b.z	ENSGT00940000155156.b.y	ENSGT00520000055616.b #9	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT00950000183097.a.a.b	ENSGT00940000173214	ENSGT00940000173288	ENSGT00940000160585	ENSGT00940000159528	ENSGT00390000011864	ENSGT01050000244937.a.a
koala	MODERN SPECIES	53	ENSPCIG00000028928	ENSPCIG00000028927	ENSPCIG00000018835 #9	ENSPCIG00000018836 #10	CREBZF (ENSPCIG00000018837) #11	CCDC89 (ENSPCIG00000018839)	ENSPCIG00000018840 #12	CCDC83 (ENSPCIG00000018849) #13	PICALM (ENSPCIG00000018862) #14	EED (ENSPCIG00000018888) #17	HIKESHI (ENSPCIG00000018890) #18	CCDC81 (ENSPCIG00000018892) #19	ENSPCIG00000018899 #21	ENSPCIG00000036562 #21	ENSPCIG00000018908	PRSS23 (ENSPCIG00000018910) #22	FZD4 (ENSPCIG00000018913) #23	TMEM135 (ENSPCIG00000027278) #24	RAB38 (ENSPCIG00000002044)	CTSC (ENSPCIG00000024375)	GRM5 (ENSPCIG00000024373)	ENSPCIG00000024370	TYR (ENSPCIG00000024368)	NOX4 (ENSPCIG00000011154)	FOLH1 (ENSPCIG00000018760)	ENSPCIG00000015183	ENSPCIG00000007029	LCP1 (ENSPCIG00000007028)	ENSPCIG00000007026	ENSPCIG00000007027	ENSPCIG00000007025
Common wonbat	MODERN SPECIES	342	ENSVURG00010006592	ENSVURG00010006557	ENSVURG00010006518	ENSVURG00010006473	ENSVURG00010006456 #9	TMEM126A (ENSVURG00010006451) #10	CREBZF (ENSVURG00010006446) #11	CCDC89 (ENSVURG00010006440)	ENSVURG00010006353 #12	PICALM (ENSVURG00010006226) #14	EED (ENSVURG00010006129) #17	ENSVURG00010006114	ENSVURG00010006106 #18	CCDC81 (ENSVURG00010006061) #19	ME3 (ENSVURG00010006020) #21	PRSS23 (ENSVURG00010005981) #22	FZD4 (ENSVURG00010005964) #23	TMEM135 (ENSVURG00010005930) #24	ENSVURG00010005908	CTSC (ENSVURG00010005899)	TYR (ENSVURG00010005865)	NOX4 (ENSVURG00010005832)	ENSVURG00010000640	LCP1 (ENSVURG00010023528)	ENSVURG00010023527	RUBCNL (ENSVURG00010023522)	LRCH1 (ENSVURG00010023509)	ENSVURG00010023498	HTR2A (ENSVURG00010023492)	ENSVURG00010023489	SUCLA2 (ENSVURG00010023483)
Tasmanian devil	MODERN SPECIES	2	DLG2 (ENSSHAG00000025318)	ENSSHAG00000028016	ENSSHAG00000025462	ENSSHAG00000029253	ENSSHAG00000025603 #9	TMEM126A (ENSSHAG00000027315) #10	CREBZF (ENSSHAG00000026899) #11	CCDC89 (ENSSHAG00000004068)	ENSSHAG00000000874 #12	CCDC83 (ENSSHAG00000006672) #13	PICALM (ENSSHAG00000004629) #14	EED (ENSSHAG00000013554) #17	ENSSHAG00000013345 #18	CCDC81 (ENSSHAG00000012907) #19	ME3 (ENSSHAG00000011265) #21	PRSS23 (ENSSHAG00000010219) #22	FZD4 (ENSSHAG00000009486) #23	TMEM135 (ENSSHAG00000005028) #24	RAB38 (ENSSHAG00000001883)	CTSC (ENSSHAG00000021775)	GRM5 (ENSSHAG00000005876)	TYR (ENSSHAG00000003407)	ENSSHAG00000004938	ENSSHAG00000002531	ENSSHAG00000002301	ENSSHAG00000031322	ENSSHAG00000013328	ENSSHAG00000030777	ENSSHAG00000012182	LRCH1 (ENSSHAG00000009981)	ESD (ENSSHAG00000024732)
Platypus	MODERN SPECIES	12	RAB30 (ENSOANG00000014498)	PCF11 (ENSOANG00000006552)	ANKRD42 (ENSOANG00000008014)	CCDC90B (ENSOANG00000045474)	DLG2 (ENSOANG00000038643)	ENSOANG00000013210 #9	ENSOANG00000013209 #10	CCDC89 (ENSOANG00000013208)	ENSOANG00000013207 #12	ENSOANG00000013206 #13	PICALM (ENSOANG00000013205) #14	EED (ENSOANG00000008884) #17	HIKESHI (ENSOANG00000038507) #18	CCDC81 (ENSOANG00000008880) #19	ME3 (ENSOANG00000008877) #21	PRSS23 (ENSOANG00000008876) #22	FZD4 (ENSOANG00000008874) #23	TMEM135 (ENSOANG00000008873) #24	RAB38 (ENSOANG00000008872)	CTSC (ENSOANG00000043869)	GRM5 (ENSOANG00000008870)	TYR (ENSOANG00000008868)	NOX4 (ENSOANG00000008867)	FOLH1 (ENSOANG00000004606)	NAALAD2 (ENSOANG00000004605)	CHORDC1 (ENSOANG00000043552)	FAT3 (ENSOANG00000011705)	ENSOANG00000042265	SLC36A4 (ENSOANG00000011707)	ENSOANG00000011708	ENSOANG00000040404
Sauria	ANCESTRAL SPECIES	2	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00940000155156.a.b	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117	ENSGT00940000153190.B.a
Lepidosauria	ANCESTRAL SPECIES	17	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00940000155156.a.b	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117	ENSGT00940000153190.B.a
Episquamata	ANCESTRAL SPECIES	2	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00940000155156.a.b	ENSGT01000000214875	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117	ENSGT00940000153190.B.a	ENSGT00390000015987
Toxicofera	ANCESTRAL SPECIES	9	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00940000155156.a.b	ENSGT01000000214875	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117	ENSGT00940000153190.B.a	ENSGT00390000015987
Elapidae	ANCESTRAL SPECIES	10	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT01000000214875	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787.m	ENSGT00940000155787.n	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b.i	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117	ENSGT00940000153190.B.a
Elapidae_a	ANCESTRAL SPECIES	41	ENSGT00940000154216.a.k	ENSGT00940000155453	ENSGT00940000155156.b.vb	ENSGT01000000214875	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a.b #21	ENSGT00950000183134.c.a.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787.m	ENSGT00940000155787.n	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b.i	ENSGT00940000154174	ENSGT00940000154981.g	ENSGT00940000162341	ENSGT00940000160117	ENSGT00940000153190.B.a
Acanthophiinae	ANCESTRAL SPECIES	42	ENSGT00940000154216.a.k	ENSGT00940000155453	ENSGT00940000155156.b.vb	ENSGT01000000214875	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a.b #21	ENSGT00950000183134.c.a.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787.m	ENSGT00940000155787.n	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b.i	ENSGT00940000154174	ENSGT00940000154981.g	ENSGT00940000162341	ENSGT00940000160117	ENSGT00940000153190.B.a
Mainland tiger snake	MODERN SPECIES	135	PCF11 (ENSNSUG00000018614)	ENSNSUG00000018613	ENSNSUG00000018612	CCDC90B (ENSNSUG00000018611)	DLG2 (ENSNSUG00000018608)	ENSNSUG00000018605	TMEM126A (ENSNSUG00000018604) #10	CREBZF (ENSNSUG00000018603) #11	CCDC89 (ENSNSUG00000018602)	ENSNSUG00000018601 #12	PICALM (ENSNSUG00000018598) #14	EED (ENSNSUG00000018585) #17	ENSNSUG00000018580 #18	CCDC81 (ENSNSUG00000018575) #19	ME3 (ENSNSUG00000018568) #21	PRSS23 (ENSNSUG00000018564) #22	FZD4 (ENSNSUG00000018563) #23	TMEM135 (ENSNSUG00000018562) #24
Eastern brown snake	MODERN SPECIES	33	PCF11 (ENSPTXG00000003566)	ENSPTXG00000003568	CCDC90B (ENSPTXG00000003570)	DLG2 (ENSPTXG00000003776)	ENSPTXG00000003779	TMEM126A (ENSPTXG00000003780) #10	CREBZF (ENSPTXG00000003782) #11	CCDC89 (ENSPTXG00000000099)	SYTL2 (ENSPTXG00000000140) #12	CCDC83 (ENSPTXG00000000218) #13	PICALM (ENSPTXG00000000248) #14	EED (ENSPTXG00000000288) #17	HIKESHI (ENSPTXG00000000303) #18	CCDC81 (ENSPTXG00000000350) #19	ME3 (ENSPTXG00000001185) #21	PRSS23 (ENSPTXG00000001186) #22	FZD4 (ENSPTXG00000001190) #23	TMEM135 (ENSPTXG00000001194) #24	RAB38 (ENSPTXG00000001201)	CTSC (ENSPTXG00000001207)	GRM5 (ENSPTXG00000001252)	TYR (ENSPTXG00000002601)	NOX4 (ENSPTXG00000002912)	FOLH1 (ENSPTXG00000002913)	NAALAD2 (ENSPTXG00000003043)	CHORDC1 (ENSPTXG00000004173)	FAT3 (ENSPTXG00000004176)	MTNR1B (ENSPTXG00000004180)	SLC36A4 (ENSPTXG00000004183)	DEUP1 (ENSPTXG00000004188)	SMCO4 (ENSPTXG00000004192)
Blue-lipped sea krait	MODERN SPECIES	5124																PRSS23 (ENSLLTG00000011348) #22
Indian cobra	MODERN SPECIES	4	CCDC90B (ENSNNAG00000006911)	ENSNNAG00000006872	ENSNNAG00000006844	ENSNNAG00000006824	ENSNNAG00000006814	TMEM126A (ENSNNAG00000006796) #10	CCDC89 (ENSNNAG00000006775)	ENSNNAG00000006760 #12	PICALM (ENSNNAG00000006381) #14	ENSNNAG00000006310 #17	ENSNNAG00000006304 #17	HIKESHI (ENSNNAG00000006290) #18	CCDC81 (ENSNNAG00000006203) #19	ENSNNAG00000006162 #21	ENSNNAG00000006142 #21	PRSS23 (ENSNNAG00000006135) #22	FZD4 (ENSNNAG00000006121) #23	ENSNNAG00000006106 #24	ENSNNAG00000006047 #24	ENSNNAG00000006022 #24	ENSNNAG00000006003	ENSNNAG00000005993	ENSNNAG00000005985	GRM5 (ENSNNAG00000005247)	TYR (ENSNNAG00000005074)	NOX4 (ENSNNAG00000005040)	FOLH1 (ENSNNAG00000004877)	NAALAD2 (ENSNNAG00000004784)	CHORDC1 (ENSNNAG00000004752)	FAT3 (ENSNNAG00000004646)	MTNR1B (ENSNNAG00000004609)
Lizard	MODERN SPECIES	2	ENSACAG00000041050	ENSACAG00000001627	ENSACAG00000039241	TMEM126A (ENSACAG00000001894) #10	CREBZF (ENSACAG00000044560) #11	CCDC89 (ENSACAG00000027099)	ENSACAG00000001917 #12	CCDC83 (ENSACAG00000002001) #13	PICALM (ENSACAG00000002037) #14	ENSACAG00000028726	EED (ENSACAG00000002420) #17	CCDC81 (ENSACAG00000002561) #19	HIKESHI (ENSACAG00000039755) #18	ME3 (ENSACAG00000002632) #21	ENSACAG00000043722	PRSS23 (ENSACAG00000002734) #22	FZD4 (ENSACAG00000002739) #23	TMEM135 (ENSACAG00000034771) #24	CTSC (ENSACAG00000015158)	GRM5 (ENSACAG00000015032)	TYR (ENSACAG00000014963)	ENSACAG00000044205	NOX4 (ENSACAG00000014875)	ENSACAG00000014644	ENSACAG00000037169	NAALAD2 (ENSACAG00000014471)	CHORDC1 (ENSACAG00000014370)	ENSACAG00000024003	ENSACAG00000016370	ENSACAG00000040047	ENSACAG00000038029
Laterata	ANCESTRAL SPECIES	3	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00940000155156.a.b	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117	ENSGT00940000153190.B.a	ENSGT00390000015987
Argentine black and white tegu	MODERN SPECIES	24	CCDC90B (ENSSMRG00000007607)	ENSSMRG00000007618	ENSSMRG00000007646	ENSSMRG00000009413	TMEM126A (ENSSMRG00000009417) #10	CREBZF (ENSSMRG00000009418) #11	CCDC89 (ENSSMRG00000009419)	ENSSMRG00000009420 #12	CCDC83 (ENSSMRG00000009455) #13	PICALM (ENSSMRG00000009456) #14	EED (ENSSMRG00000009469) #17	HIKESHI (ENSSMRG00000009470) #18	CCDC81 (ENSSMRG00000009482) #19	ME3 (ENSSMRG00000009483) #21	ENSSMRG00000009486	PRSS23 (ENSSMRG00000009512) #22	FZD4 (ENSSMRG00000009513) #23	TMEM135 (ENSSMRG00000009520) #24	ENSSMRG00000009534	RAB38 (ENSSMRG00000009551)	CTSC (ENSSMRG00000009552)	GRM5 (ENSSMRG00000009569)	TYR (ENSSMRG00000009675)	NOX4 (ENSSMRG00000009686)	FOLH1 (ENSSMRG00000009691)	NAALAD2 (ENSSMRG00000009705)	CHORDC1 (ENSSMRG00000009707)	ENSSMRG00000009708	ENSSMRG00000009714	ENSSMRG00000009720	FAT3 (ENSSMRG00000009743)
Common wall lizard	MODERN SPECIES	12	PCF11 (ENSPMRG00000001908)	ANKRD42 (ENSPMRG00000001939)	CCDC90B (ENSPMRG00000001968)	ENSPMRG00000002057	ENSPMRG00000002191	ENSPMRG00000002194	TMEM126A (ENSPMRG00000002199) #10	CCDC89 (ENSPMRG00000002202)	ENSPMRG00000002209 #12	CCDC83 (ENSPMRG00000002226) #13	PICALM (ENSPMRG00000002250) #14	EED (ENSPMRG00000002299) #17	HIKESHI (ENSPMRG00000002304) #18	CCDC81 (ENSPMRG00000002312) #19	ME3 (ENSPMRG00000002329) #21	PRSS23 (ENSPMRG00000002350) #22	FZD4 (ENSPMRG00000002357) #23	TMEM135 (ENSPMRG00000002367) #24	RAB38 (ENSPMRG00000002382)	CTSC (ENSPMRG00000002387)	GRM5 (ENSPMRG00000002393)	TYR (ENSPMRG00000002408)	NOX4 (ENSPMRG00000002424)	FOLH1 (ENSPMRG00000002456)	CHORDC1 (ENSPMRG00000002476)	ENSPMRG00000002487	ENSPMRG00000002494	ENSPMRG00000002498	FAT3 (ENSPMRG00000002530)	ENSPMRG00000002617	MTNR1B (ENSPMRG00000002623)
tuatara	MODERN SPECIES	1945					ENSSPUG00000012759	ENSSPUG00000012740	ENSSPUG00000012730	TMEM126A (ENSSPUG00000012722) #10	CCDC89 (ENSSPUG00000012713)	ENSSPUG00000012663 #12	PICALM (ENSSPUG00000012595) #14	EED (ENSSPUG00000012553) #17	HIKESHI (ENSSPUG00000012540) #18	CCDC81 (ENSSPUG00000012453) #19	ME3 (ENSSPUG00000012403) #21	PRSS23 (ENSSPUG00000012392) #22	ENSSPUG00000012370 #24	ENSSPUG00000012350 #24	ENSSPUG00000012342 #24	ENSSPUG00000012321
Archelosauria	ANCESTRAL SPECIES		ENSGT00940000155453	ENSGT00940000155156.b	ENSGT01000000214875	ENSGT01030000234954	ENSGT00940000155156.a.b	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117	ENSGT00940000153190.B.a
Archosauria	ANCESTRAL SPECIES	2	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT01000000214875	ENSGT01030000234954	ENSGT00940000155156.a.b	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117	ENSGT00940000153190.B.a
Aves	ANCESTRAL SPECIES																ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117	ENSGT00940000153190.B.a
Neognathae	ANCESTRAL SPECIES	1	ENSGT00520000055616.a #10	ENSGT00940000155156.a.b	ENSGT00940000155156.a.a	ENSGT01030000234954	ENSGT01000000214875	ENSGT00940000155156.b	ENSGT00940000155453	ENSGT00940000154216.a	ENSGT00440000034259.b	ENSGT00940000156875	ENSGT00940000166008	ENSGT00940000158099	ENSGT01100000265350	ENSGT00940000154730.b	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117	ENSGT00940000153190.B.a
Galloanserae	ANCESTRAL SPECIES	1	ENSGT00940000155843 #12	ENSGT00390000016046	ENSGT00390000016589 #11	ENSGT00520000055616.a #10	ENSGT00940000155156.a.b	ENSGT00940000155156.a.a	ENSGT00940000155453	ENSGT00940000154216.a	ENSGT00440000034259.b	ENSGT00940000156875	ENSGT00940000166008	ENSGT00940000158099	ENSGT01100000265350	ENSGT00940000154730.b	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117	ENSGT00940000153190.B.a	ENSGT00390000015987
Anatidae	ANCESTRAL SPECIES	16															ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117	ENSGT00940000153190.B.a	ENSGT00390000015987
Pink-footed goose	MODERN SPECIES	69															ME3 (ENSABRG00000022638) #21	PRSS23 (ENSABRG00000022643) #22	FZD4 (ENSABRG00000022646) #23	TMEM135 (ENSABRG00000022647) #24	RAB38 (ENSABRG00000022652)	CTSC (ENSABRG00000022653)	GRM5 (ENSABRG00000022656)	TYR (ENSABRG00000022662)	NOX4 (ENSABRG00000022666)	FOLH1 (ENSABRG00000022670)	ENSABRG00000022672	ENSABRG00000022673	CHORDC1 (ENSABRG00000022674)	FAT3 (ENSABRG00000022682)	MTNR1B (ENSABRG00000022688)	SLC36A4 (ENSABRG00000022693)	DEUP1 (ENSABRG00000022695)
Duck	MODERN SPECIES		ENSAPLG00000023760	ACOD1 (ENSAPLG00000005580)	ENSAPLG00000005619	CLN5 (ENSAPLG00000026549)	ENSAPLG00000008898	ENSAPLG00000019759	MYCBP2 (ENSAPLG00000012782)	SLAIN1 (ENSAPLG00000012744)	EDNRB (ENSAPLG00000012291)	OBI1 (ENSAPLG00000012233)	RBM26 (ENSAPLG00000011536)	NDFIP2 (ENSAPLG00000011385)	SPRY2 (ENSAPLG00000011597)	ENSAPLG00000023803	ME3 (ENSAPLG00000006405) #21	PRSS23 (ENSAPLG00000011467) #22	FZD4 (ENSAPLG00000006281) #23	ENSAPLG00000020776	ENSAPLG00000030227 #24	ENSAPLG00000006242 #24	ENSAPLG00000024135	RAB38 (ENSAPLG00000009310)	CTSC (ENSAPLG00000009381)	ENSAPLG00000031170	GRM5 (ENSAPLG00000009575)	TYR (ENSAPLG00000012676)	NOX4 (ENSAPLG00000012543)	FOLH1 (ENSAPLG00000012440)	NAALAD2 (ENSAPLG00000012368)	CHORDC1 (ENSAPLG00000000579)	FAT3 (ENSAPLG00000013451)
Phasianidae	ANCESTRAL SPECIES		ENSGT00390000013087 #13	ENSGT00940000155843 #12	ENSGT00390000016046	ENSGT00390000016589 #11	ENSGT00520000055616.a #10	ENSGT00940000155156.a.b	ENSGT00940000155156.a.a	ENSGT00940000155453	ENSGT00940000154216.a	ENSGT00440000034259.b	ENSGT00940000156875	ENSGT00940000166008	ENSGT00940000158099	ENSGT00940000154730.b	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981.a	ENSGT00940000162341	ENSGT00940000160117	ENSGT00940000153190.B.a	ENSGT00390000015987
Japanese quail	MODERN SPECIES		PICALM (ENSCJPG00005004383) #14	ENSCJPG00005004381 #13	ENSCJPG00005004380 #12	CCDC89 (ENSCJPG00005004376)	CREBZF (ENSCJPG00005004375) #11	TMEM126A (ENSCJPG00005004371) #10	ENSCJPG00005004364	ENSCJPG00005004310	CCDC90B (ENSCJPG00005004187)	ANKRD42 (ENSCJPG00005004177)	ENSCJPG00005004176	RAB30 (ENSCJPG00005004175)	ENSCJPG00005004173	PRCP (ENSCJPG00005004171)	ME3 (ENSCJPG00005004170) #21	PRSS23 (ENSCJPG00005004169) #22	FZD4 (ENSCJPG00005004166) #23	TMEM135 (ENSCJPG00005004163) #24	RAB38 (ENSCJPG00005004158)	CTSC (ENSCJPG00005004155)	GRM5 (ENSCJPG00005004152)	TYR (ENSCJPG00005004127)	NOX4 (ENSCJPG00005004115)	FOLH1 (ENSCJPG00005004111)	NAALAD2 (ENSCJPG00005004108)	CHORDC1 (ENSCJPG00005004096)	ENSCJPG00005004093	FAT3 (ENSCJPG00005004054)	ENSCJPG00005004037	MTNR1B (ENSCJPG00005004035)	ENSCJPG00005004027
Phasianidae_b	ANCESTRAL SPECIES		ENSGT00950000183068.a.b #14	ENSGT00390000013087 #13	ENSGT00940000155843 #12	ENSGT00390000016046	ENSGT00390000016589 #11	ENSGT00520000055616.a #10	ENSGT00940000155156.a.a	ENSGT00940000155453	ENSGT00940000154216.a	ENSGT00440000034259.b	ENSGT00940000156875	ENSGT00940000166008	ENSGT00940000158099	ENSGT00940000154730.b	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981.a	ENSGT00940000162341	ENSGT00940000160117	ENSGT00940000153190.B.a	ENSGT00390000015987
Chicken	MODERN SPECIES		SYTL2 (ENSGALG00010008111) #12	CCDC89 (ENSGALG00010008102)	CREBZF (ENSGALG00010009144) #11	TMEM126A (ENSGALG00010008098) #10	DLG2 (ENSGALG00010008069)	CCDC90B (ENSGALG00010008012)	ANKRD42 (ENSGALG00010008005)	PCF11 (ENSGALG00010007991)	RAB30 (ENSGALG00010007979)	ENSGALG00010007846	ENSGALG00010007818	PRCP (ENSGALG00010007811)	FAM181B (ENSGALG00010007854)	ME3 (ENSGALG00010007803) #21	FZD4 (ENSGALG00010007763) #23	PRSS23 (ENSGALG00010007753) #22	TMEM135 (ENSGALG00010007679) #24	RAB38 (ENSGALG00010007506)	CTSC (ENSGALG00010007485)	GRM5 (ENSGALG00010007886)	ENSGALG00010007873	TYR (ENSGALG00010007864)	NOX4 (ENSGALG00010007357)	FOLH1 (ENSGALG00010007404)	NAALAD2 (ENSGALG00010007392)	CHORDC1 (ENSGALG00010007375)	FAT3 (ENSGALG00010007920)	MTNR1B (ENSGALG00010009056)	SLC36A4 (ENSGALG00010009039)	DEUP1 (ENSGALG00010009012)	SMCO4 (ENSGALG00010008974)
Turkey	MODERN SPECIES		ARFIP2 (ENSMGAG00000015281)	ENSMGAG00000015279	ENSMGAG00000015217	ENSMGAG00000017364	ENSMGAG00000015216	ENSMGAG00000015218	ENSMGAG00000015220	ENSMGAG00000020786	ENSMGAG00000015221	ENSMGAG00000015222	ENSMGAG00000015223	ENSMGAG00000016476 #24	ENSMGAG00000018715 #24	ENSMGAG00000015226 #23	ENSMGAG00000021781	ENSMGAG00000015628 #22	ENSMGAG00000022177	ENSMGAG00000015227 #21	ENSMGAG00000015230	ENSMGAG00000015229	ENSMGAG00000015228	PCF11 (ENSMGAG00000015231)	ENSMGAG00000015233	ENSMGAG00000015232	ENSMGAG00000015234	ENSMGAG00000016818	ENSMGAG00000020572	ENSMGAG00000020506	ENSMGAG00000015236 #10	ENSMGAG00000015637	ENSMGAG00000015237 #12
Neognathae_b	ANCESTRAL SPECIES		ENSGT00520000055616.a #10	ENSGT00940000155156.a.b	ENSGT00940000155156.a.a	ENSGT01030000234954	ENSGT01000000214875	ENSGT00940000155156.b	ENSGT00940000155453	ENSGT00940000154216.a	ENSGT00440000034259.b	ENSGT00940000156875	ENSGT00940000166008	ENSGT00940000158099	ENSGT01100000265350	ENSGT00940000154730.b	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117	ENSGT00940000153190.B.a
Passeriformes	ANCESTRAL SPECIES	1	ENSGT00390000016046	ENSGT00390000016589 #11	ENSGT00520000055616.a #10	ENSGT00940000155156.a.b	ENSGT01030000234954	ENSGT01000000214875	ENSGT00940000155156.b	ENSGT00940000155453	ENSGT00940000154216.a	ENSGT00440000034259.b	ENSGT00940000156875	ENSGT00940000166008	ENSGT00940000158099	ENSGT00940000154730.b	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000163982.sd.b	ENSGT00940000160117	ENSGT00940000153190.B.a
Great tit	MODERN SPECIES		PICALM (ENSPMJG00000001746) #14	CCDC83 (ENSPMJG00000001732) #13	SYTL2 (ENSPMJG00000001685) #12	CREBZF (ENSPMJG00000001593) #11	TMEM126A (ENSPMJG00000001566) #10	ENSPMJG00000001563	ENSPMJG00000001264	CCDC90B (ENSPMJG00000001139)	ANKRD42 (ENSPMJG00000001132)	PCF11 (ENSPMJG00000001112)	RAB30 (ENSPMJG00000001108)	ENSPMJG00000001091	PRCP (ENSPMJG00000001085)	FAM181B (ENSPMJG00000001078)	ME3 (ENSPMJG00000001028) #21	PRSS23 (ENSPMJG00000000939) #22	FZD4 (ENSPMJG00000000923) #23	TMEM135 (ENSPMJG00000000812) #24	RAB38 (ENSPMJG00000000650)	CTSC (ENSPMJG00000000646)	GRM5 (ENSPMJG00000000632)	TYR (ENSPMJG00000000599)	NOX4 (ENSPMJG00000000571)	FOLH1 (ENSPMJG00000000554)	NAALAD2 (ENSPMJG00000000533)	CHORDC1 (ENSPMJG00000000513)	FAT3 (ENSPMJG00000000168)	MTNR1B (ENSPMJG00000000122)	ENSPMJG00000000068	SLC36A4 (ENSPMJG00000017902)	DEUP1 (ENSPMJG00000017897)
Passeriformes_d	ANCESTRAL SPECIES	1	ENSGT00940000155843 #12	ENSGT00390000016046	ENSGT00520000055616.a #10	ENSGT00940000155156.a.b	ENSGT01030000234954	ENSGT01000000214875	ENSGT00940000155156.b	ENSGT00940000155453	ENSGT00940000154216.a	ENSGT00440000034259.b	ENSGT00940000156875	ENSGT00940000166008	ENSGT00940000158099	ENSGT00940000154730.b	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000163982.sd.b	ENSGT00940000160117	ENSGT00940000153190.B.a
Passeriformes_g	ANCESTRAL SPECIES	2	ENSGT00390000013087 #13	ENSGT00940000155843 #12	ENSGT00390000016046	ENSGT00520000055616.a #10	ENSGT01030000234954	ENSGT01000000214875	ENSGT00940000155156.b	ENSGT00940000155453	ENSGT00940000154216.a	ENSGT00440000034259.b	ENSGT00940000156875	ENSGT00940000166008	ENSGT00940000158099	ENSGT00940000154730.b	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000163982.sd.b	ENSGT00940000160117	ENSGT00940000153190.B.a
Passeroidea	ANCESTRAL SPECIES	5	ENSGT00510000047334 #17	ENSGT00950000183068.a.b #14	ENSGT00390000013087 #13	ENSGT00940000155843 #12	ENSGT00520000055616.a #10	ENSGT01000000214875	ENSGT00940000155156.b	ENSGT00940000155453	ENSGT00940000154216.a	ENSGT00440000034259.b	ENSGT00940000156875	ENSGT00940000166008	ENSGT00940000158099	ENSGT00940000154730.b	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000163982.sd.b	ENSGT00940000160117	ENSGT00940000153190.B.a
Zebra finch	MODERN SPECIES		PICALM (ENSTGUG00000012969) #14	ENSTGUG00000012968 #13	SYTL2 (ENSTGUG00000012963) #12	TMEM126A (ENSTGUG00000012961) #10	DLG2 (ENSTGUG00000012956)	CCDC90B (ENSTGUG00000012950)	ENSTGUG00000027854	ENSTGUG00000026995	ANKRD42 (ENSTGUG00000012948)	PCF11 (ENSTGUG00000012944)	RAB30 (ENSTGUG00000020570)	ENSTGUG00000021729	PRCP (ENSTGUG00000012934)	FAM181B (ENSTGUG00000022639)	ME3 (ENSTGUG00000012920) #21	PRSS23 (ENSTGUG00000012918) #22	FZD4 (ENSTGUG00000018923) #23	TMEM135 (ENSTGUG00000012910) #24	RAB38 (ENSTGUG00000012909)	CTSC (ENSTGUG00000012906)	GRM5 (ENSTGUG00000012900)	TYR (ENSTGUG00000012899)	NOX4 (ENSTGUG00000012893)	FOLH1 (ENSTGUG00000012884)	CHORDC1 (ENSTGUG00000029643)	FAT3 (ENSTGUG00000012873)	MTNR1B (ENSTGUG00000028228)	ENSTGUG00000012868	SLC36A4 (ENSTGUG00000012863)	DEUP1 (ENSTGUG00000012862)	SMCO4 (ENSTGUG00000024656)
Common canary	MODERN SPECIES	4	HIKESHI (ENSSCAG00000001551) #18	EED (ENSSCAG00000001579) #17	PICALM (ENSSCAG00000001782) #14	ENSSCAG00000002460 #13	ENSSCAG00000002467 #12	TMEM126A (ENSSCAG00000002479) #10	ENSSCAG00000002488	DLG2 (ENSSCAG00000002598)	CCDC90B (ENSSCAG00000002918)	ANKRD42 (ENSSCAG00000002924)	PCF11 (ENSSCAG00000002940)	RAB30 (ENSSCAG00000002948)	ENSSCAG00000002952	PRCP (ENSSCAG00000002976)	ME3 (ENSSCAG00000002985) #21	PRSS23 (ENSSCAG00000002988) #22	FZD4 (ENSSCAG00000003017) #23	TMEM135 (ENSSCAG00000003027) #24	RAB38 (ENSSCAG00000003089)	CTSC (ENSSCAG00000003096)	GRM5 (ENSSCAG00000003123)	TYR (ENSSCAG00000003149)	NOX4 (ENSSCAG00000003176)	FOLH1 (ENSSCAG00000003270)	NAALAD2 (ENSSCAG00000003286)	CHORDC1 (ENSSCAG00000003291)	FAT3 (ENSSCAG00000003312)	MTNR1B (ENSSCAG00000003497)	SLC36A4 (ENSSCAG00000003536)	DEUP1 (ENSSCAG00000003544)	SMCO4 (ENSSCAG00000003568)
Medium ground finch	MODERN SPECIES	5	PICALM (ENSGFOG00000005903) #14	CCDC83 (ENSGFOG00000005886) #13	ENSGFOG00000005867 #12	CCDC89 (ENSGFOG00000005856)	TMEM126A (ENSGFOG00000005849) #10	ENSGFOG00000005844	ENSGFOG00000005841	DLG2 (ENSGFOG00000005564)	CCDC90B (ENSGFOG00000005480)	ANKRD42 (ENSGFOG00000005425)	PCF11 (ENSGFOG00000005400)	RAB30 (ENSGFOG00000005381)	ENSGFOG00000005366	PRCP (ENSGFOG00000005352)	ME3 (ENSGFOG00000005337) #21	PRSS23 (ENSGFOG00000005329) #22	FZD4 (ENSGFOG00000005323) #23	TMEM135 (ENSGFOG00000005294) #24	RAB38 (ENSGFOG00000005283)	CTSC (ENSGFOG00000005273)	GRM5 (ENSGFOG00000005240)	TYR (ENSGFOG00000005224)	NOX4 (ENSGFOG00000005163)	NAALAD2 (ENSGFOG00000005109)	CHORDC1 (ENSGFOG00000005089)	FAT3 (ENSGFOG00000004779)	MTNR1B (ENSGFOG00000004699)	SLC36A4 (ENSGFOG00000004662)	SMCO4 (ENSGFOG00000004649)	ENSGFOG00000004589	TAF1D (ENSGFOG00000004531)
Flycatcher	MODERN SPECIES		PICALM (ENSFALG00000007689) #14	CCDC83 (ENSFALG00000007697) #13	ENSFALG00000007705 #12	TMEM126A (ENSFALG00000007726) #10	ENSFALG00000024900	ENSFALG00000029086	ENSFALG00000007731	CCDC90B (ENSFALG00000007739)	ANKRD42 (ENSFALG00000007744)	PCF11 (ENSFALG00000007754)	RAB30 (ENSFALG00000007765)	ENSFALG00000027423	PRCP (ENSFALG00000007776)	ENSFALG00000007780	ME3 (ENSFALG00000007794) #21	PRSS23 (ENSFALG00000015061) #22	FZD4 (ENSFALG00000025539) #23	TMEM135 (ENSFALG00000007846) #24	RAB38 (ENSFALG00000007850)	CTSC (ENSFALG00000007853)	GRM5 (ENSFALG00000007862)	TYR (ENSFALG00000007878)	NOX4 (ENSFALG00000023852)	ENSFALG00000007887	NAALAD2 (ENSFALG00000007895)	CHORDC1 (ENSFALG00000007903)	FAT3 (ENSFALG00000000272)	MTNR1B (ENSFALG00000000278)	ENSFALG00000000280	ENSFALG00000026085	SLC36A4 (ENSFALG00000000281)
Neognathae_c	ANCESTRAL SPECIES	11	ENSGT00390000016046	ENSGT00390000016589 #11	ENSGT00520000055616.a #10	ENSGT00940000155156.a.b	ENSGT00940000155156.a.a	ENSGT00940000155156.b	ENSGT00940000155453	ENSGT00940000154216.a	ENSGT00440000034259.b	ENSGT00940000156875	ENSGT00940000166008	ENSGT00940000158099	ENSGT01100000265350	ENSGT00940000154730.b	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117	ENSGT00940000153190.B.a
Kakapo	MODERN SPECIES	11	ENSSHBG00005016046 #12	CCDC89 (ENSSHBG00005016044)	CREBZF (ENSSHBG00005016039) #11	TMEM126A (ENSSHBG00005016034) #10	ENSSHBG00005016026	ENSSHBG00005003273	CCDC90B (ENSSHBG00005001860)	ANKRD42 (ENSSHBG00005001836)	PCF11 (ENSSHBG00005001785)	RAB30 (ENSSHBG00005000224)	ENSSHBG00005000219	PRCP (ENSSHBG00005000200)	ENSSHBG00005006446	FAM181B (ENSSHBG00005006436)	ME3 (ENSSHBG00005006384) #21	PRSS23 (ENSSHBG00005006359) #22	FZD4 (ENSSHBG00005006331) #23	TMEM135 (ENSSHBG00005006315) #24	RAB38 (ENSSHBG00005006290)	CTSC (ENSSHBG00005006261)	GRM5 (ENSSHBG00005006198)	TYR (ENSSHBG00005006130)	NOX4 (ENSSHBG00005006075)	ENSSHBG00005006050	FOLH1 (ENSSHBG00005005442)	ENSSHBG00005005233	ENSSHBG00005005219	CHORDC1 (ENSSHBG00005005198)	FAT3 (ENSSHBG00005004336)	MTNR1B (ENSSHBG00005004082)	SLC36A4 (ENSSHBG00005003986)
Golden eagle	MODERN SPECIES	10	ENSACCG00020008947 #12	CCDC89 (ENSACCG00020008913)	CREBZF (ENSACCG00020008904) #11	TMEM126A (ENSACCG00020008886) #10	ENSACCG00020008856	ENSACCG00020008763	CCDC90B (ENSACCG00020008670)	ANKRD42 (ENSACCG00020008637)	PCF11 (ENSACCG00020008605)	ENSACCG00020008589	RAB30 (ENSACCG00020008577)	ENSACCG00020008564	PRCP (ENSACCG00020008550)	FAM181B (ENSACCG00020008539)	ME3 (ENSACCG00020008518) #21	PRSS23 (ENSACCG00020008503) #22	FZD4 (ENSACCG00020008491) #23	TMEM135 (ENSACCG00020008471) #24	RAB38 (ENSACCG00020008457)	CTSC (ENSACCG00020008445)	GRM5 (ENSACCG00020008410)	TYR (ENSACCG00020008350)	NOX4 (ENSACCG00020008319)	ENSACCG00020008302	FOLH1 (ENSACCG00020008291)	NAALAD2 (ENSACCG00020008252)	CHORDC1 (ENSACCG00020008213)	ENSACCG00020008196	ENSACCG00020008176	MTNR1B (ENSACCG00020008161)	SLC36A4 (ENSACCG00020008156)
African ostrich	MODERN SPECIES	237																PRSS23 (ENSSCUG00000004734) #22	FZD4 (ENSSCUG00000004736) #23	TMEM135 (ENSSCUG00000004739) #24	SPAG17 (ENSSCUG00000004743)	WDR3 (ENSSCUG00000004754)	GDAP2 (ENSSCUG00000004757)	TENT5C (ENSSCUG00000004759)	ATP6V1A (ENSSCUG00000004760)	NAA50 (ENSSCUG00000004763)	USF3 (ENSSCUG00000004765)	SIDT1 (ENSSCUG00000004767)	SPICE1 (ENSSCUG00000004771)	TRIM45 (ENSSCUG00000004774)	VTCN1 (ENSSCUG00000004776)	ENSSCUG00000004778	METTL16 (ENSSCUG00000004781)
Australian saltwater crocodile	MODERN SPECIES	27	DDIAS (ENSCPRG00005016217)	RAB30 (ENSCPRG00005016207)	PCF11 (ENSCPRG00005016193)	ANKRD42 (ENSCPRG00005016174)	CCDC90B (ENSCPRG00005016161)	ENSCPRG00005016157	ENSCPRG00005016151	ENSCPRG00005016140	TMEM126A (ENSCPRG00005016136) #10	ENSCPRG00005016131 #12	CCDC83 (ENSCPRG00005016129) #13	PICALM (ENSCPRG00005016082) #14	EED (ENSCPRG00005016068) #17	HIKESHI (ENSCPRG00005016067) #18	ME3 (ENSCPRG00005016065) #21	PRSS23 (ENSCPRG00005016061) #22	FZD4 (ENSCPRG00005016056) #23	TMEM135 (ENSCPRG00005016050) #24	RAB38 (ENSCPRG00005016034)	CTSC (ENSCPRG00005016032)	GRM5 (ENSCPRG00005016003)	TYR (ENSCPRG00005015987)	NOX4 (ENSCPRG00005015970)	FOLH1 (ENSCPRG00005015598)	ENSCPRG00005015519	ENSCPRG00005015516	CHORDC1 (ENSCPRG00005015503)	FAT3 (ENSCPRG00005015491)	MTNR1B (ENSCPRG00005015445)	SMCO4 (ENSCPRG00005015426)	ENSCPRG00005015383
Cryptodira	ANCESTRAL SPECIES		ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT01030000234954	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117	ENSGT00940000153190.B.a
Testudinoidea	ANCESTRAL SPECIES	1	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT01030000234954	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174.a	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117	ENSGT00940000153190.B.a.a
Emydidae	ANCESTRAL SPECIES	19	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT01030000234954	ENSGT00940000155156.a.b	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787.o	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174.a	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117	ENSGT00940000153190.B.a.a
painted turtle	MODERN SPECIES	753	ANKRD42 (ENSCPBG00000006830)	CCDC90B (ENSCPBG00000006821)	ENSCPBG00000006811	ENSCPBG00000006766	ENSCPBG00000006719	TMEM126A (ENSCPBG00000006706) #10	CREBZF (ENSCPBG00000006697) #11	CCDC89 (ENSCPBG00000006691)	ENSCPBG00000006665 #12	CCDC83 (ENSCPBG00000006650) #13	PICALM (ENSCPBG00000006596) #14	EED (ENSCPBG00000006558) #17	HIKESHI (ENSCPBG00000006540) #18	CCDC81 (ENSCPBG00000006529) #19	ME3 (ENSCPBG00000006522) #21	PRSS23 (ENSCPBG00000006510) #22	FZD4 (ENSCPBG00000006503) #23	TMEM135 (ENSCPBG00000006491) #24
Three-toed box turtle	MODERN SPECIES	41	PCF11 (ENSTMTG00000016313)	ENSTMTG00000016349	ENSTMTG00000016360	CCDC90B (ENSTMTG00000016374)	ENSTMTG00000016399	ENSTMTG00000016416	ENSTMTG00000016448	TMEM126A (ENSTMTG00000016454) #10	CREBZF (ENSTMTG00000016468) #11	CCDC89 (ENSTMTG00000016486)	ENSTMTG00000016506 #12	PICALM (ENSTMTG00000016582) #14	ENSTMTG00000016675 #17	HIKESHI (ENSTMTG00000016701) #18	ME3 (ENSTMTG00000016711) #21	PRSS23 (ENSTMTG00000016824) #22	FZD4 (ENSTMTG00000016832) #23	ENSTMTG00000016839 #24	ENSTMTG00000016850 #24	RAB38 (ENSTMTG00000016878)	ENSTMTG00000016889	GRM5 (ENSTMTG00000016932)	TYR (ENSTMTG00000017343)	NOX4 (ENSTMTG00000017371)	ENSTMTG00000017415	FOLH1 (ENSTMTG00000017450)	NAALAD2 (ENSTMTG00000018096)	CHORDC1 (ENSTMTG00000020258)	FAT3 (ENSTMTG00000020266)	MTNR1B (ENSTMTG00000020281)	ENSTMTG00000020287
Testudinidae	ANCESTRAL SPECIES		ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT01030000234954	ENSGT00520000055616.a #10	ENSGT00390000016589 #11	ENSGT00390000016046	ENSGT00940000155843 #12	ENSGT00390000013087 #13	ENSGT00950000183068.a.b #14	ENSGT00510000047334 #17	ENSGT00390000004056 #18	ENSGT00390000011985 #19	ENSGT00950000183134.c.a.a #21	ENSGT00960000190865	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT00950000185226	ENSGT00940000169935	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174.a	ENSGT00940000154981.f	ENSGT00940000154981.e	ENSGT00940000162341
Goode s thornscrub tortoise	MODERN SPECIES		ENSGEVG00005001886	CCDC90B (ENSGEVG00005001904)	DLG2 (ENSGEVG00005001935)	ENSGEVG00005002025	TMEM126A (ENSGEVG00005002036) #10	CREBZF (ENSGEVG00005002049) #11	CCDC89 (ENSGEVG00005002061)	SYTL2 (ENSGEVG00005002100) #12	PICALM (ENSGEVG00005002184) #14	EED (ENSGEVG00005002273) #17	ENSGEVG00005002287 #18	CCDC81 (ENSGEVG00005002301) #19	ME3 (ENSGEVG00005002332) #21	ENSGEVG00005002358	ENSGEVG00005002369	PRSS23 (ENSGEVG00005002374) #22	FZD4 (ENSGEVG00005002383) #23	TMEM135 (ENSGEVG00005002398) #24	RAB38 (ENSGEVG00005002424)	CTSC (ENSGEVG00005002445)	GRM5 (ENSGEVG00005002494)	TYR (ENSGEVG00005002619)	ENSGEVG00005002630	NOX4 (ENSGEVG00005002640)	ENSGEVG00005002656	ENSGEVG00005002661	FOLH1 (ENSGEVG00005002701)	NAALAD2 (ENSGEVG00005002830)	CHORDC1 (ENSGEVG00005002862)	ENSGEVG00005002873	ENSGEVG00005002883
Abingdon island giant tortoise	MODERN SPECIES	2453	ENSCABG00000019849	GCLC (ENSCABG00000019845)	ELOVL5 (ENSCABG00000019838)	GCM1 (ENSCABG00000019835)	FBXO9 (ENSCABG00000019830)	CILK1 (ENSCABG00000019810)	ENSCABG00000019808	ENSCABG00000019687	ENSCABG00000019612	EED (ENSCABG00000019569) #17	HIKESHI (ENSCABG00000019563) #18	CCDC81 (ENSCABG00000019555) #19	ENSCABG00000019551 #21	ENSCABG00000019550 #21	ENSCABG00000019549	PRSS23 (ENSCABG00000019546) #22
Chinese turtle	MODERN SPECIES	706							TMEM126A (ENSPSIG00000006667) #10	CCDC89 (ENSPSIG00000001567)	ENSPSIG00000006701 #12	CCDC83 (ENSPSIG00000007052) #13	PICALM (ENSPSIG00000009433) #14	EED (ENSPSIG00000010993) #17	HIKESHI (ENSPSIG00000011852) #18	CCDC81 (ENSPSIG00000012206) #19	ME3 (ENSPSIG00000012232) #21	PRSS23 (ENSPSIG00000013760) #22	FZD4 (ENSPSIG00000013806) #23	TMEM135 (ENSPSIG00000013965) #24	ENSPSIG00000014919	RAB38 (ENSPSIG00000015574)	CTSC (ENSPSIG00000015613)	TYR (ENSPSIG00000016986)	NOX4 (ENSPSIG00000017588)	FOLH1 (ENSPSIG00000017747)	NAALAD2 (ENSPSIG00000017958)	CHORDC1 (ENSPSIG00000006884)	ENSPSIG00000001573