Euarchontoglires	ANCESTRAL SPECIES	1	ENSGT00940000155156.b	ENSGT00520000055616.b #10	ENSGT00520000055616.a #11	ENSGT00390000016589 #12	ENSGT00390000016046 #13	ENSGT00940000155843 #14	ENSGT00390000013087 #16	ENSGT00900000143390	ENSGT00950000183068.a.b #17	ENSGT00510000047334 #18	ENSGT00390000004056 #19	ENSGT00390000011985 #20	ENSGT00940000164723	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b #25	ENSGT00940000155787 #26	ENSGT01030000234595.A.a #27	ENSGT00940000155336 #29	ENSGT00940000159621 #30	ENSGT00950000185226	ENSGT00940000167196	ENSGT01030000234598.b.a.b.k.a #31	ENSGT00940000162409	ENSGT00940000163419 #34	ENSGT00940000160005.A #37	ENSGT00940000163778 #32	ENSGT00940000163440 #36
Primates	ANCESTRAL SPECIES		ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b #10	ENSGT00520000055616.a #11	ENSGT00390000016589 #12	ENSGT00390000016046 #13	ENSGT00940000155843 #14	ENSGT00390000013087 #16	ENSGT00900000143390	ENSGT00950000183068.a.b #17	ENSGT00510000047334 #18	ENSGT00390000004056 #19	ENSGT00390000011985 #20	ENSGT00940000164723	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b #25	ENSGT00940000155787 #26	ENSGT01030000234595.A.a #27	ENSGT00940000155336 #29	ENSGT00940000159621 #30	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a #31	ENSGT00940000162409	ENSGT00940000163419 #34	ENSGT00940000160005.A #37	ENSGT00940000163778 #32	ENSGT00940000163440 #36	ENSGT00940000163858
Haplorrhini	ANCESTRAL SPECIES		ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b #10	ENSGT00520000055616.a #11	ENSGT00390000016589 #12	ENSGT00390000016046 #13	ENSGT00940000155843 #14	ENSGT00390000013087 #16	ENSGT00900000143390	ENSGT00950000183068.a.b #17	ENSGT00510000047334 #18	ENSGT00390000004056 #19	ENSGT00390000011985 #20	ENSGT00940000164723	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b #25	ENSGT00940000155787 #26	ENSGT01030000234595.A.a #27	ENSGT00940000155336 #29	ENSGT00940000159621 #30	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a #31	ENSGT00940000162409	ENSGT00940000163419 #34	ENSGT00940000160005.A #37	ENSGT00940000163778 #32	ENSGT00940000163440 #36	ENSGT00940000163858
Simiiformes	ANCESTRAL SPECIES		ENSGT00860000135923	ENSGT00940000155156.b	ENSGT00520000055616.b #10	ENSGT00520000055616.a #11	ENSGT00390000016589 #12	ENSGT00390000016046 #13	ENSGT00940000155843 #14	ENSGT00390000013087 #16	ENSGT00900000143390	ENSGT00950000183068.a.b #17	ENSGT00510000047334 #18	ENSGT00390000004056 #19	ENSGT00390000011985 #20	ENSGT00940000164723	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b #25	ENSGT00940000155787 #26	ENSGT01030000234595.A.a #27	ENSGT00940000155336 #29	ENSGT00940000159621 #30	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a #31	ENSGT00940000163778 #32	ENSGT00940000160005.A #37	ENSGT00940000163419 #34	ENSGT00940000162409	ENSGT00940000163440 #36	ENSGT00940000163858
Catarrhini	ANCESTRAL SPECIES	1	ENSGT00860000135923	ENSGT00940000155156.b	ENSGT00520000055616.b #10	ENSGT00520000055616.a #11	ENSGT00390000016589 #12	ENSGT00390000016046 #13	ENSGT00940000155843 #14	ENSGT00390000013087 #16	ENSGT00950000183068.a.b #17	ENSGT00550000074935.v	ENSGT00510000047334 #18	ENSGT00390000004056 #19	ENSGT00390000011985 #20	ENSGT00940000164723	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946	ENSGT00940000157301.b #25	ENSGT00940000155787 #26	ENSGT01030000234595.A.a #27	ENSGT00910000147856	ENSGT00940000155336 #29	ENSGT00940000159621 #30	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a #31	ENSGT00940000163778 #32	ENSGT00940000160005.A #37	ENSGT00940000163419 #34
Cercopithecidae	ANCESTRAL SPECIES		ENSGT00860000135923	ENSGT00940000155156.b	ENSGT00520000055616.b #10	ENSGT00520000055616.a #11	ENSGT00390000016589 #12	ENSGT00390000016046 #13	ENSGT00940000155843 #14	ENSGT00390000013087 #16	ENSGT00950000183068.a.b #17	ENSGT00550000074935.v	ENSGT00510000047334 #18	ENSGT00390000004056 #19	ENSGT00390000011985 #20	ENSGT00940000164723	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946	ENSGT00940000157301.b #25	ENSGT00940000155787 #26	ENSGT00910000147216	ENSGT01030000234595.A.a #27	ENSGT00910000147856	ENSGT00940000155336 #29	ENSGT00940000159621 #30	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a #31	ENSGT00940000163778 #32	ENSGT00940000163440.a ##36
Cercopithecinae	ANCESTRAL SPECIES	3	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b #10	ENSGT00520000055616.a #11	ENSGT00390000016589 #12	ENSGT00390000016046 #13	ENSGT00940000155843 #14	ENSGT00390000013087 #16	ENSGT00950000183068.a.b #17	ENSGT00550000074935.v	ENSGT00510000047334 #18	ENSGT00390000004056 #19	ENSGT00390000011985 #20	ENSGT00940000164723	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946	ENSGT00940000157301.b #25	ENSGT00940000155787 #26	ENSGT00910000147216	ENSGT01030000234595.A.a #27	ENSGT00940000155336 #29	ENSGT00940000159621 #30	ENSGT01030000234598.b.a.b.k.a #31	ENSGT00940000163778 #32	ENSGT00940000163440.a ##36	ENSGT00940000160005.A.g #37	ENSGT00940000163440.b.b #36
Cercopithecinae_a	ANCESTRAL SPECIES	2	ENSGT00940000154847.b	ENSGT00940000153402.c.a.a.b.d	ENSGT00520000055616.b #10	ENSGT00520000055616.a #11	ENSGT00390000016589 #12	ENSGT00390000016046 #13	ENSGT00940000155843 #14	ENSGT00390000013087 #16	ENSGT00950000183068.a.b #17	ENSGT00550000074935.v	ENSGT00510000047334 #18	ENSGT00390000004056 #19	ENSGT00390000011985 #20	ENSGT00940000164723	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946	ENSGT00940000157301.b #25	ENSGT00940000155787 #26	ENSGT00910000147216	ENSGT01030000234595.A.a #27	ENSGT00940000155336 #29	ENSGT00940000159621 #30	ENSGT01030000234598.b.a.b.k.a #31	ENSGT00940000163778 #32	ENSGT00940000163440.b.a #33	ENSGT00940000163213.a.b.d ##35	ENSGT01030000234598.b.a.b.k.b ##31
Macaca	ANCESTRAL SPECIES	2	ENSGT00940000154847.b	ENSGT00940000153402.c.a.a.b.d	ENSGT00520000055616.b.e ##11	ENSGT00520000055616.b.f #10	ENSGT00520000055616.a #11	ENSGT00390000016589 #12	ENSGT00390000016046 #13	ENSGT00940000155843 #14	ENSGT00390000013087 #16	ENSGT00950000183068.a.b #17	ENSGT00550000074935.v	ENSGT00510000047334 #18	ENSGT00390000004056 #19	ENSGT00390000011985 #20	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946	ENSGT00940000157301.b #25	ENSGT00940000155787 #26	ENSGT00910000147216	ENSGT01030000234595.A.a #27	ENSGT00940000155336 #29	ENSGT00940000159621 #30	ENSGT01030000234598.b.a.b.k.a #31	ENSGT00940000163778 #32	ENSGT00940000163440.b.a #33	ENSGT01030000234598.b.a.b.k.b ##31	ENSGT00940000161627.a.a.a.a.b.a.a.b.a.a.a.a.a.a.a.b.a.a.a.b.a.b.b.a.b
Macaca_a	ANCESTRAL SPECIES	3	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT01100000263493.a.b.a.a.a.a.a.a.a.b.a.a.b.a.a.a #8	ENSGT00520000055616.b.f #10	ENSGT00520000055616.a #11	ENSGT00390000016589 #12	ENSGT00390000016046 #13	ENSGT00940000155843 #14	ENSGT01100000263509.a.a.b.a.a.b #15	ENSGT00390000013087 #16	ENSGT00950000183068.a.b #17	ENSGT00510000047334 #18	ENSGT00390000004056 #19	ENSGT00390000011985 #20	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b #25	ENSGT00940000155787 #26	ENSGT01030000234595.A.a #27	ENSGT00940000155336 #29	ENSGT00940000159621 #30	ENSGT01030000234598.b.a.b.k.a #31	ENSGT00940000163778 #32	ENSGT00940000163440.b.a #33	ENSGT00940000163419.g #34	ENSGT00940000163440.b.b #36	ENSGT00940000160005.A.g.a #37	ENSGT00940000163213.a.b.c.a #35	ENSGT00940000163440.a.b.a ##36
Rhesus	MODERN SPECIES	5	ENSMMUG00000051769 #7	ENSMMUG00000050245 #8	ENSMMUG00000050119 #9	TMEM126B (ENSMMUG00000016540) #10	TMEM126A (ENSMMUG00000057373) #11	CREBZF (ENSMMUG00000016543) #12	CCDC89 (ENSMMUG00000063415) #13	SYTL2 (ENSMMUG00000012449) #14	ENSMMUG00000058091 #15	CCDC83 (ENSMMUG00000019617) #16	PICALM (ENSMMUG00000019618) #17	EED (ENSMMUG00000019621) #18	HIKESHI (ENSMMUG00000017730) #19	CCDC81 (ENSMMUG00000013045) #20	ME3 (ENSMMUG00000013055) #21	PRSS23 (ENSMMUG00000003717) #22	FZD4 (ENSMMUG00000004048) #23	TMEM135 (ENSMMUG00000010229) #24	RAB38 (ENSMMUG00000016006) #25	CTSC (ENSMMUG00000022139) #26	GRM5 (ENSMMUG00000010184) #27	ENSMMUG00000051617 #28	TYR (ENSMMUG00000011115) #29	NOX4 (ENSMMUG00000011116) #30	FOLH1 (ENSMMUG00000012596) #31	TRIM77 (ENSMMUG00000048340) #32	ENSMMUG00000051536 #33	ENSMMUG00000064584 #34	ENSMMUG00000051175 #35	ENSMMUG00000053493 #36	ENSMMUG00000041090 #37
Crab-eating macaque	MODERN SPECIES	5	ENSMFAG00000052763	ENSMFAG00000037137 #10	TMEM126A (ENSMFAG00000000919) #11	ENSMFAG00000059074	CCDC89 (ENSMFAG00000015719) #13	SYTL2 (ENSMFAG00000032887) #14	ENSMFAG00000056194 #15	CCDC83 (ENSMFAG00000002840) #16	PICALM (ENSMFAG00000002978) #17	ENSMFAG00000059633	ENSMFAG00000049118	EED (ENSMFAG00000045418) #18	HIKESHI (ENSMFAG00000035626) #19	CCDC81 (ENSMFAG00000003801) #20	ME3 (ENSMFAG00000037695) #21	PRSS23 (ENSMFAG00000036910) #22	FZD4 (ENSMFAG00000034431) #23	TMEM135 (ENSMFAG00000016730) #24	RAB38 (ENSMFAG00000044903) #25	ENSMFAG00000049993	CTSC (ENSMFAG00000031718) #26	GRM5 (ENSMFAG00000034520) #27	ENSMFAG00000057700	ENSMFAG00000051174	ENSMFAG00000048157	ENSMFAG00000056499	TYR (ENSMFAG00000045366) #29	NOX4 (ENSMFAG00000002005) #30	FOLH1 (ENSMFAG00000044622) #31	TRIM77 (ENSMFAG00000043172) #32	ENSMFAG00000054922 ##36
Cercopithecinae_b	ANCESTRAL SPECIES	32	ENSGT00940000154847.b	ENSGT00940000153402.c.a.a.b.d	ENSGT00520000055616.b #10	ENSGT00520000055616.a #11	ENSGT00390000016589 #12	ENSGT00390000016046 #13	ENSGT00940000155843 #14	ENSGT00390000013087 #16	ENSGT00950000183068.a.b #17	ENSGT00550000074935.v	ENSGT00510000047334 #18	ENSGT00390000004056 #19	ENSGT00390000011985 #20	ENSGT00940000164723	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946	ENSGT00940000157301.b #25	ENSGT00940000155787 #26	ENSGT00910000147216	ENSGT01030000234595.A.a #27	ENSGT00940000155336 #29	ENSGT00940000159621 #30	ENSGT01030000234598.b.a.b.k.a #31	ENSGT00940000163778 #32	ENSGT00940000163440.a.a ##36	ENSGT00940000163440.b.a #33	ENSGT00940000163213.a.b.d ##35
Olive baboon	MODERN SPECIES	3	ENSPANG00000046399	ENSPANG00000042996	DLG2 (ENSPANG00000007863)	TMEM126B (ENSPANG00000014631) #10	TMEM126A (ENSPANG00000011636) #11	ENSPANG00000035892	CCDC89 (ENSPANG00000048782) #13	SYTL2 (ENSPANG00000010114) #14	CCDC83 (ENSPANG00000019126) #16	PICALM (ENSPANG00000019177) #17	EED (ENSPANG00000023331) #18	HIKESHI (ENSPANG00000006476) #19	CCDC81 (ENSPANG00000011943) #20	ENSPANG00000038398	ME3 (ENSPANG00000019664) #21	PRSS23 (ENSPANG00000001585) #22	FZD4 (ENSPANG00000007432) #23	TMEM135 (ENSPANG00000016447) #24	RAB38 (ENSPANG00000007862) #25	ENSPANG00000040539	CTSC (ENSPANG00000006475) #26	ENSPANG00000041846	GRM5 (ENSPANG00000010013) #27	ENSPANG00000042320	TYR (ENSPANG00000050970) #29	NOX4 (ENSPANG00000011635) #30	ENSPANG00000037841	FOLH1 (ENSPANG00000034012) #31	TRIM77 (ENSPANG00000031543) #32	ENSPANG00000012860 #33	ENSPANG00000022721 ##35
Vervet Monkey	MODERN SPECIES		ANKRD42 (ENSCSAG00000003699)	CCDC90B (ENSCSAG00000003693)	DLG2 (ENSCSAG00000003691)	TMEM126B (ENSCSAG00000003685) #10	TMEM126A (ENSCSAG00000003683) #11	CREBZF (ENSCSAG00000000613) #12	CCDC89 (ENSCSAG00000000612) #13	SYTL2 (ENSCSAG00000003677) #14	CCDC83 (ENSCSAG00000003666) #16	ENSCSAG00000000611	PICALM (ENSCSAG00000003661) #17	EED (ENSCSAG00000003653) #18	HIKESHI (ENSCSAG00000003649) #19	CCDC81 (ENSCSAG00000003644) #20	ME3 (ENSCSAG00000003640) #21	PRSS23 (ENSCSAG00000000610) #22	FZD4 (ENSCSAG00000003633) #23	TMEM135 (ENSCSAG00000003625) #24	RAB38 (ENSCSAG00000003620) #25	CTSC (ENSCSAG00000003618) #26	GRM5 (ENSCSAG00000003616) #27	TYR (ENSCSAG00000003613) #29	NOX4 (ENSCSAG00000003604) #30	FOLH1 (ENSCSAG00000003592) #31	TRIM77 (ENSCSAG00000003587) #32	ENSCSAG00000003583 #36	ENSCSAG00000003576	ENSCSAG00000003574 #34	ENSCSAG00000003571	ENSCSAG00000003569 #37	ENSCSAG00000003564 ##35
Rhinopithecus	ANCESTRAL SPECIES	265	ENSGT00940000154847.b	ENSGT00940000153402.c.a.a.b.d	ENSGT00390000008688.j	ENSGT00520000055616.b #10	ENSGT00520000055616.a #11	ENSGT00390000016589 #12	ENSGT00940000155843 #14	ENSGT00390000013087 #16	ENSGT00950000183068.a.b #17	ENSGT00940000167729	ENSGT00510000047334 #18	ENSGT00390000004056 #19	ENSGT00390000011985 #20	ENSGT00940000164723	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946
Black snub-nosed monkey	MODERN SPECIES	1515	ENSRBIG00000039292	ENSRBIG00000038408	TMEM126B (ENSRBIG00000027901) #10	TMEM126A (ENSRBIG00000044867) #11	CREBZF (ENSRBIG00000033657) #12	SYTL2 (ENSRBIG00000027668) #14	CCDC83 (ENSRBIG00000041473) #16	PICALM (ENSRBIG00000028102) #17	ENSRBIG00000006505	ENSRBIG00000031252	EED (ENSRBIG00000043003) #18	HIKESHI (ENSRBIG00000030285) #19	CCDC81 (ENSRBIG00000044110) #20	ENSRBIG00000006153	ME3 (ENSRBIG00000038261) #21	PRSS23 (ENSRBIG00000011058) #22	FZD4 (ENSRBIG00000037688) #23	TMEM135 (ENSRBIG00000040442) #24	ENSRBIG00000008442
Hominoidea	ANCESTRAL SPECIES	1	ENSGT00940000154847.b	ENSGT00940000153402.c.b.b.e.a	ENSGT00520000055616.b #10	ENSGT00520000055616.a #11	ENSGT00390000016589 #12	ENSGT00390000016046 #13	ENSGT00940000155843 #14	ENSGT00390000013087 #16	ENSGT00950000183068.a.b #17	ENSGT00550000074935.v	ENSGT00510000047334 #18	ENSGT00390000004056 #19	ENSGT00390000011985 #20	ENSGT00940000164723	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946	ENSGT00940000157301.b #25	ENSGT00940000155787 #26	ENSGT01030000234595.A.a #27	ENSGT00910000147856	ENSGT00940000155336 #29	ENSGT00940000159621 #30	ENSGT01030000234598.b.a.b.k.a #31	ENSGT00940000163778 #32	ENSGT00940000163440.c #36	ENSGT00940000165665.b	ENSGT00940000163419.d.a.b #34
Hominidae	ANCESTRAL SPECIES	1	ENSGT00940000154847.b	ENSGT00940000153402.c.b.b.e.a	ENSGT00520000055616.b #10	ENSGT00520000055616.a #11	ENSGT00390000016589 #12	ENSGT00390000016046 #13	ENSGT00940000155843 #14	ENSGT00390000013087 #16	ENSGT00950000183068.a.b #17	ENSGT00550000074935.v	ENSGT00510000047334 #18	ENSGT00390000004056 #19	ENSGT00390000011985 #20	ENSGT00940000164723	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946	ENSGT00940000157301.b #25	ENSGT00940000155787 #26	ENSGT01030000234595.A.a #27	ENSGT00910000147856	ENSGT00940000155336 #29	ENSGT00940000159621 #30	ENSGT01030000234598.b.a.b.k.a #31	ENSGT00940000163778 #32	ENSGT00940000163440.c #36	ENSGT00940000165665.b	ENSGT00940000163213.a.b.b.b #35
Orangutan	MODERN SPECIES	2	CCDC90B (ENSPPYG00000003736)	DLG2 (ENSPPYG00000003737)	TMEM126A (ENSPPYG00000003738) #11	CREBZF (ENSPPYG00000003740) #12	CCDC89 (ENSPPYG00000003741) #13	SYTL2 (ENSPPYG00000003742) #14	CCDC83 (ENSPPYG00000003743) #16	ENSPPYG00000038885	PICALM (ENSPPYG00000003744) #17	ENSPPYG00000032045	EED (ENSPPYG00000003745) #18	HIKESHI (ENSPPYG00000003746) #19	CCDC81 (ENSPPYG00000003747) #20	ENSPPYG00000036300	ME3 (ENSPPYG00000003748) #21	PRSS23 (ENSPPYG00000003749) #22	FZD4 (ENSPPYG00000003750) #23	TMEM135 (ENSPPYG00000003751) #24	RAB38 (ENSPPYG00000003752) #25	CTSC (ENSPPYG00000003753) #26	GRM5 (ENSPPYG00000003754) #27	TYR (ENSPPYG00000003755) #29	NOX4 (ENSPPYG00000003756) #30	FOLH1 (ENSPPYG00000003757) #31	TRIM77 (ENSPPYG00000003758) #32	ENSPPYG00000004089 #36	ENSPPYG00000040623	ENSPPYG00000038435 #35	ENSPPYG00000003762 #34	ENSPPYG00000034685 #36	ENSPPYG00000040150 #34
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	8	ENSGT00940000153402.c.b.b.e.a	ENSGT00520000055616.b #10	ENSGT00520000055616.a #11	ENSGT00390000016589 #12	ENSGT00390000016046 #13	ENSGT00940000155843 #14	ENSGT00390000013087 #16	ENSGT00950000183068.a.b #17	ENSGT00550000074935.v	ENSGT00510000047334 #18	ENSGT00390000004056 #19	ENSGT00390000011985 #20	ENSGT00950000183134.c.a.a #21	ENSGT01050000244956.b.c.a.b	ENSGT00910000148359	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946	ENSGT00940000157301.b #25	ENSGT00940000155787 #26	ENSGT01030000234595.A.a #27	ENSGT00910000147856	ENSGT00940000155336 #29	ENSGT00940000159621 #30	ENSGT01030000234598.b.a.b.k.a #31	ENSGT00940000163778 #32	ENSGT00940000165665.b.d	ENSGT00940000163213.a.b.b.b #35	ENSGT00940000163419.c #34
Homo/Pan group	ANCESTRAL SPECIES	1	ENSGT00940000153402.c.b.b.e.a	ENSGT00520000055616.b #10	ENSGT00520000055616.a #11	ENSGT00390000016589 #12	ENSGT00390000016046 #13	ENSGT00940000155843 #14	ENSGT00390000013087 #16	ENSGT00950000183068.a.b #17	ENSGT00550000074935.v	ENSGT00510000047334 #18	ENSGT00390000004056 #19	ENSGT00390000011985 #20	ENSGT00950000183134.c.a.a #21	ENSGT01050000244956.b.c.a.b	ENSGT00910000148359	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946	ENSGT00940000157301.b #25	ENSGT00940000155787 #26	ENSGT01030000234595.A.a #27	ENSGT00910000147856	ENSGT00940000155336 #29	ENSGT00940000159621 #30	ENSGT01030000234598.b.a.b.k.a #31	ENSGT00940000163778 #32	ENSGT00940000165665.b.d	ENSGT00940000163419.c.b #34	ENSGT00940000163440.d #36
Human	MODERN SPECIES	2	PCF11 (ENSG00000165494)	ANKRD42 (ENSG00000137494)	CCDC90B (ENSG00000137500)	DLG2 (ENSG00000150672)	TMEM126B (ENSG00000171204) #10	TMEM126A (ENSG00000171202) #11	CREBZF (ENSG00000137504) #12	CCDC89 (ENSG00000179071) #13	SYTL2 (ENSG00000137501) #14	CCDC83 (ENSG00000150676) #16	PICALM (ENSG00000073921) #17	EED (ENSG00000074266) #18	HIKESHI (ENSG00000149196) #19	CCDC81 (ENSG00000149201) #20	ME3 (ENSG00000151376) #21	PRSS23 (ENSG00000150687) #22	FZD4 (ENSG00000174804) #23	TMEM135 (ENSG00000166575) #24	RAB38 (ENSG00000123892) #25	CTSC (ENSG00000109861) #26	GRM5 (ENSG00000168959) #27	TYR (ENSG00000077498) #29	NOX4 (ENSG00000086991) #30	TRIM77 (ENSG00000214414) #32	TRIM49 (ENSG00000168930)	TRIM64B (ENSG00000189253) #36	TRIM49D1 (ENSG00000223417) #35	TRIM49D2 (ENSG00000233802) #35	TRIM64 (ENSG00000204450) #36	TRIM49C (ENSG00000204449)	UBTFL1 (ENSG00000255009)
Strepsirrhini	ANCESTRAL SPECIES	6	ENSGT00940000155453	ENSGT00940000155156.b.`b	ENSGT00520000055616.b #10	ENSGT00520000055616.a.`b #11	ENSGT00390000016589 #12	ENSGT00390000016046 #13	ENSGT00940000155843 #14	ENSGT00390000013087 #16	ENSGT00900000143390	ENSGT00950000183068.a.b #17	ENSGT00510000047334 #18	ENSGT00390000004056 #19	ENSGT00390000011985 #20	ENSGT00940000164723	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b #25	ENSGT00940000155787 #26	ENSGT01030000234595.A.a #27	ENSGT00940000155336 #29	ENSGT00940000159621 #30	ENSGT01030000234598.b.a.b.k.a #31	ENSGT01030000234598.b.a.b.k.b ##31	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117	ENSGT00940000153190.B.a	ENSGT00390000015987
Lemuriformes	ANCESTRAL SPECIES	13	ENSGT00940000155453	ENSGT00940000155156.b.`b	ENSGT00520000055616.b #10	ENSGT00520000055616.a.`b #11	ENSGT00390000016589 #12	ENSGT00910000148212	ENSGT00390000016046 #13	ENSGT00940000155843 #14	ENSGT00390000013087 #16	ENSGT00900000143390	ENSGT00950000183068.a.b #17	ENSGT00510000047334 #18	ENSGT00390000004056 #19	ENSGT00390000011985 #20	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b #25	ENSGT00940000155787 #26	ENSGT01030000234595.A.a #27	ENSGT00940000155336 #29	ENSGT00940000159621 #30	ENSGT01030000234598.b.a.b.k.a #31	ENSGT00940000160005.A.l #37	ENSGT00940000163440 #36	ENSGT00940000160005.A.k #37	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b ##31	ENSGT00940000154174	ENSGT00940000154981
Mouse lemur	MODERN SPECIES	27	KCTD14 (ENSMICG00000044183)	ENSMICG00000043874	ENSMICG00000027485	ENSMICG00000009022	TMEM126B (ENSMICG00000029604) #10	TMEM126A (ENSMICG00000005510) #11	CREBZF (ENSMICG00000033683) #12	SYTL2 (ENSMICG00000005519) #14	CCDC83 (ENSMICG00000017254) #16	PICALM (ENSMICG00000017261) #17	ENSMICG00000010728 #18	HIKESHI (ENSMICG00000000946) #19	CCDC81 (ENSMICG00000000948) #20	ENSMICG00000037743	ME3 (ENSMICG00000000951) #21	PRSS23 (ENSMICG00000026361) #22	FZD4 (ENSMICG00000012533) #23	TMEM135 (ENSMICG00000013387) #24	RAB38 (ENSMICG00000028169) #25	CTSC (ENSMICG00000002445) #26	GRM5 (ENSMICG00000002451) #27	TYR (ENSMICG00000037850) #29	NOX4 (ENSMICG00000014398) #30	ENSMICG00000042150 #31	ENSMICG00000013580	NAALAD2 (ENSMICG00000015630) ##31	ENSMICG00000015646	ENSMICG00000031389	MTNR1B (ENSMICG00000043189)	SLC36A4 (ENSMICG00000033063)	DEUP1 (ENSMICG00000017876)
Lemuriformes_a	ANCESTRAL SPECIES	133	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b.`b	ENSGT00520000055616.b #10	ENSGT00520000055616.a.`b #11	ENSGT00910000148212	ENSGT00390000016046 #13	ENSGT00940000155843 #14	ENSGT00390000013087 #16	ENSGT00900000143390	ENSGT00950000183068.a.b #17	ENSGT00510000047334 #18	ENSGT00390000004056 #19	ENSGT00390000011985 #20	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b #25	ENSGT00940000155787 #26	ENSGT01030000234595.A.a #27	ENSGT00940000155336 #29	ENSGT00940000159621 #30	ENSGT01030000234598.b.a.b.k.a #31	ENSGT00940000163858	ENSGT00940000160005.A.k #37	ENSGT00940000163440 #36	ENSGT00940000160005.A.l #37	ENSGT01030000234598.b.a.b.k.b ##31	ENSGT00940000154174
Greater bamboo lemur	MODERN SPECIES	625	TMEM126B (ENSPSMG00000007232) #10	ENSPSMG00000007247 #11	ENSPSMG00000007260	CCDC89 (ENSPSMG00000007263) #13	SYTL2 (ENSPSMG00000007523) #14	CCDC83 (ENSPSMG00000007641) #16	ENSPSMG00000007653	PICALM (ENSPSMG00000008098) #17	ENSPSMG00000008423	ENSPSMG00000008429	ENSPSMG00000008449	EED (ENSPSMG00000008532) #18	HIKESHI (ENSPSMG00000008554) #19	CCDC81 (ENSPSMG00000008616) #20	ME3 (ENSPSMG00000008707) #21	PRSS23 (ENSPSMG00000008732) #22	FZD4 (ENSPSMG00000008734) #23	TMEM135 (ENSPSMG00000008862) #24	RAB38 (ENSPSMG00000008937) #25	CTSC (ENSPSMG00000008979) #26	GRM5 (ENSPSMG00000009090) #27	TYR (ENSPSMG00000009145) #29	NOX4 (ENSPSMG00000009300) #30	FOLH1 (ENSPSMG00000009438) #31	ENSPSMG00000009461	ENSPSMG00000009467 #37	ENSPSMG00000009478 #36	ENSPSMG00000009540 #37	NAALAD2 (ENSPSMG00000009674) ##31	CHORDC1 (ENSPSMG00000009826)
Bushbaby	MODERN SPECIES	116	DLG2 (ENSOGAG00000010597)	ENSOGAG00000029637	ENSOGAG00000027183	ENSOGAG00000005403 #11	CREBZF (ENSOGAG00000027039) #12	CCDC89 (ENSOGAG00000005407) #13	ENSOGAG00000030902 #14	CCDC83 (ENSOGAG00000013946) #16	PICALM (ENSOGAG00000013950) #17	ENSOGAG00000029699	EED (ENSOGAG00000025611) #18	HIKESHI (ENSOGAG00000013958) #19	CCDC81 (ENSOGAG00000013961) #20	ENSOGAG00000025640	ME3 (ENSOGAG00000013965) #21	PRSS23 (ENSOGAG00000011479) #22	ENSOGAG00000032179	FZD4 (ENSOGAG00000011478) #23	TMEM135 (ENSOGAG00000013804) #24	ENSOGAG00000027554	ENSOGAG00000027235	RAB38 (ENSOGAG00000004961) #25	CTSC (ENSOGAG00000009168) #26	GRM5 (ENSOGAG00000003814) #27	ENSOGAG00000024204 #29	NOX4 (ENSOGAG00000012261) #30	FOLH1 (ENSOGAG00000002014) #31	NAALAD2 (ENSOGAG00000011836) ##31	CHORDC1 (ENSOGAG00000003523)	ENSOGAG00000030993	ENSOGAG00000015055
Euarchontoglires_A	ANCESTRAL SPECIES	1	ENSGT00940000155156.b	ENSGT00520000055616.b #10	ENSGT00520000055616.a #11	ENSGT00390000016589 #12	ENSGT00390000016046 #13	ENSGT00940000155843 #14	ENSGT00390000013087 #16	ENSGT00900000143390	ENSGT00950000183068.a.b #17	ENSGT00510000047334 #18	ENSGT00390000004056 #19	ENSGT00390000011985 #20	ENSGT00940000164723	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b #25	ENSGT00940000155787 #26	ENSGT01030000234595.A.a #27	ENSGT00940000155336 #29	ENSGT00940000159621 #30	ENSGT01030000234598.b.a.b.k.a #31	ENSGT01030000234598.b.a.b.k.b ##31	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117	ENSGT00940000153190.B.a	ENSGT00390000015987
Tree shrew	MODERN SPECIES	2511															ME3 (ENSTBEG00000013109) #21	PRSS23 (ENSTBEG00000013503) #22	TMEM135 (ENSTBEG00000013609) #24
Glires	ANCESTRAL SPECIES	1	ENSGT00940000155156.b	ENSGT00520000055616.b #10	ENSGT00520000055616.a #11	ENSGT00390000016589 #12	ENSGT00390000016046 #13	ENSGT00940000155843 #14	ENSGT00390000013087 #16	ENSGT00900000143390	ENSGT00950000183068.a.b #17	ENSGT00510000047334 #18	ENSGT00390000004056 #19	ENSGT00390000011985 #20	ENSGT00940000164723	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b #25	ENSGT00940000155787 #26	ENSGT01030000234595.A.a #27	ENSGT00940000155336 #29	ENSGT00940000159621 #30	ENSGT01030000234598.b.a.b.k.a #31	ENSGT01030000234598.b.a.b.k.b ##31	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117	ENSGT00940000153190.B.a	ENSGT00390000015987
Rodentia	ANCESTRAL SPECIES	1	ENSGT00940000155156.b	ENSGT00520000055616.b #10	ENSGT00520000055616.a #11	ENSGT00390000016589 #12	ENSGT00390000016046 #13	ENSGT00940000155843 #14	ENSGT00390000013087 #16	ENSGT00900000143390	ENSGT00950000183068.a.b #17	ENSGT00510000047334 #18	ENSGT00390000004056 #19	ENSGT00390000011985 #20	ENSGT00940000164723	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b #25	ENSGT00940000155787 #26	ENSGT01030000234595.A.a #27	ENSGT00940000155336 #29	ENSGT00940000159621 #30	ENSGT01030000234598.b.a.b.k.a #31	ENSGT01030000234598.b.a.b.k.b ##31	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117	ENSGT00940000153190.B.a	ENSGT00390000015987
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00940000155453.n.b	ENSGT00940000155156.b	ENSGT00520000055616.b #10	ENSGT00520000055616.a #11	ENSGT00390000016589 #12	ENSGT00390000016046 #13	ENSGT00940000155843 #14	ENSGT00390000013087 #16	ENSGT00900000143390	ENSGT00950000183068.a.b #17	ENSGT00510000047334 #18	ENSGT00390000004056 #19	ENSGT00390000011985 #20	ENSGT00940000164723	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b #25	ENSGT00940000155787 #26	ENSGT01030000234595.A.a #27	ENSGT00940000155336 #29	ENSGT00940000159621 #30	ENSGT01030000234598.b.a.b.k.a #31	ENSGT01030000234598.b.a.b.k.b ##31	ENSGT00940000154174.f	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117	ENSGT00940000153190.B.a	ENSGT00390000015987
Sciuridae	ANCESTRAL SPECIES	2	ENSGT00940000154216.a	ENSGT00940000155453.o	ENSGT00940000155156.b	ENSGT00520000055616.b #10	ENSGT00520000055616.a #11	ENSGT00390000016589 #12	ENSGT00390000016046 #13	ENSGT00940000155843 #14	ENSGT00390000013087 #16	ENSGT00950000183068.a.b #17	ENSGT00510000047334 #18	ENSGT00390000004056 #19	ENSGT00390000011985 #20	ENSGT00940000164723	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b #25	ENSGT00940000155787 #26	ENSGT01030000234595.A.a #27	ENSGT00940000155336 #29	ENSGT00940000159621 #30	ENSGT01030000234598.b.a.b.k.a #31	ENSGT00940000163440 #36	ENSGT00940000160005.A.n #37	ENSGT00940000162409	ENSGT00940000163419 #34	ENSGT01030000234598.b.a.b.k.b ##31	ENSGT00940000154174.f	ENSGT00940000154981
Marmotini	ANCESTRAL SPECIES	28	ENSGT00940000154216.a	ENSGT00940000155453.o	ENSGT00940000155156.b	ENSGT00520000055616.b #10	ENSGT00520000055616.a #11	ENSGT00390000016589 #12	ENSGT00390000016046 #13	ENSGT00940000155843 #14	ENSGT00390000013087 #16	ENSGT00950000183068.a.b #17	ENSGT00510000047334 #18	ENSGT00390000004056 #19	ENSGT00390000011985 #20	ENSGT00940000164723	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b #25	ENSGT00940000155787 #26	ENSGT01030000234595.A.a #27	ENSGT00940000155336 #29	ENSGT00940000159621 #30	ENSGT01030000234598.b.a.b.k.a #31	ENSGT00940000162409.a	ENSGT00940000162409.b	ENSGT00940000163419 #34
Marmotini_b	ANCESTRAL SPECIES	13	ENSGT00940000154216.a	ENSGT00940000155453.n.a	ENSGT00940000155156.b	ENSGT00520000055616.b #10	ENSGT00520000055616.a #11	ENSGT00390000016589 #12	ENSGT00390000016046 #13	ENSGT00940000155843 #14	ENSGT00390000013087 #16	ENSGT00950000183068.a.b #17	ENSGT00510000047334 #18	ENSGT00390000004056 #19	ENSGT00390000011985 #20	ENSGT00940000164723	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b #25	ENSGT00940000155787 #26	ENSGT01030000234595.A.a #27	ENSGT00940000155336 #29	ENSGT00940000159621 #30	ENSGT01030000234598.b.a.b.k.a #31	ENSGT00940000162409.a	ENSGT00940000162409.b
Arctic ground squirrel	MODERN SPECIES	249													HIKESHI (ENSUPAG00010006622) #19	CCDC81 (ENSUPAG00010006635) #20	ME3 (ENSUPAG00010006666) #21	PRSS23 (ENSUPAG00010006681) #22	FZD4 (ENSUPAG00010006688) #23	TMEM135 (ENSUPAG00010006691) #24	RAB38 (ENSUPAG00010006729) #25	ENSUPAG00010006747 #26	GRM5 (ENSUPAG00010006754) #27	ENSUPAG00010006768	ENSUPAG00010006773 #27	TYR (ENSUPAG00010006775) #29	NOX4 (ENSUPAG00010006782) #30	ENSUPAG00010006804 #31	ENSUPAG00010006822	ENSUPAG00010007051
Squirrel	MODERN SPECIES	98	CCDC90B (ENSSTOG00000001632)	ENSSTOG00000024205	DLG2 (ENSSTOG00000002895)	TMEM126B (ENSSTOG00000002952) #10	ENSSTOG00000016101 #11	CREBZF (ENSSTOG00000002975) #12	CCDC89 (ENSSTOG00000002976) #13	SYTL2 (ENSSTOG00000027973) #14	CCDC83 (ENSSTOG00000008671) #16	PICALM (ENSSTOG00000008689) #17	EED (ENSSTOG00000004680) #18	HIKESHI (ENSSTOG00000004702) #19	CCDC81 (ENSSTOG00000014479) #20	ENSSTOG00000028574	ME3 (ENSSTOG00000014488) #21	PRSS23 (ENSSTOG00000007434) #22	FZD4 (ENSSTOG00000007437) #23
Alpin marmot	MODERN SPECIES	3	PCF11 (ENSMMMG00000006414)	ANKRD42 (ENSMMMG00000006331)	CCDC90B (ENSMMMG00000006292)	ENSMMMG00000006288	DLG2 (ENSMMMG00000005928)	TMEM126B (ENSMMMG00000005835) #10	ENSMMMG00000005829 #11	CCDC89 (ENSMMMG00000005814) #13	ENSMMMG00000005468 #14	CCDC83 (ENSMMMG00000005426) #16	PICALM (ENSMMMG00000005144) #17	EED (ENSMMMG00000005118) #18	HIKESHI (ENSMMMG00000005096) #19	CCDC81 (ENSMMMG00000005061) #20	ME3 (ENSMMMG00000004996) #21	PRSS23 (ENSMMMG00000004975) #22	FZD4 (ENSMMMG00000004931) #23	TMEM135 (ENSMMMG00000004893) #24	RAB38 (ENSMMMG00000004867) #25	CTSC (ENSMMMG00000004793) #26	GRM5 (ENSMMMG00000004503) #27	TYR (ENSMMMG00000004445) #29	NOX4 (ENSMMMG00000004402) #30	ENSMMMG00000004374	FOLH1 (ENSMMMG00000004192) #31
Eurasian red squirrel	MODERN SPECIES	2	DLG2 (ENSSVLG00005016472)	TMEM126B (ENSSVLG00005019236) #10	TMEM126A (ENSSVLG00005019268) #11	CREBZF (ENSSVLG00005019339) #12	CCDC89 (ENSSVLG00005019395) #13	SYTL2 (ENSSVLG00005019752) #14	CCDC83 (ENSSVLG00005020010) #16	PICALM (ENSSVLG00005020135) #17	EED (ENSSVLG00005020425) #18	HIKESHI (ENSSVLG00005020558) #19	CCDC81 (ENSSVLG00005020655) #20	ENSSVLG00005021006	ME3 (ENSSVLG00005021021) #21	ENSSVLG00005021162	ENSSVLG00005021180	PRSS23 (ENSSVLG00005021223) #22	FZD4 (ENSSVLG00005021251) #23	TMEM135 (ENSSVLG00005021306) #24	RAB38 (ENSSVLG00005021462) #25	CTSC (ENSSVLG00005021500) #26	GRM5 (ENSSVLG00005021581) #27	ENSSVLG00005021721	TYR (ENSSVLG00005021737) #29	NOX4 (ENSSVLG00005021836) #30	ENSSVLG00005022060	FOLH1 (ENSSVLG00005022156) #31	ENSSVLG00005022633 #36	ENSSVLG00005022685 #36	ENSSVLG00005022728	ENSSVLG00005022760 #34	ENSSVLG00005022908
Hystricomorpha	ANCESTRAL SPECIES	5	ENSGT00940000154216.a	ENSGT00940000155453.n.b.b	ENSGT00940000155156.b	ENSGT00520000055616.b #10	ENSGT00520000055616.a #11	ENSGT00390000016589 #12	ENSGT00390000016046 #13	ENSGT00940000155843 #14	ENSGT00390000013087 #16	ENSGT00900000143390	ENSGT00950000183068.a.b #17	ENSGT00510000047334 #18	ENSGT00390000004056 #19	ENSGT00390000011985 #20	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b #25	ENSGT00940000155787 #26	ENSGT01030000234595.A.a #27	ENSGT00940000155336 #29	ENSGT00940000159621 #30	ENSGT01030000234598.b.a.b.k.a #31	ENSGT01030000234598.b.a.b.k.b ##31	ENSGT00940000154174.f	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117	ENSGT00940000153190.B.a	ENSGT00390000015987
Naked mole-rat female	MODERN SPECIES	24	ENSHGLG00000003500	ENSHGLG00000003233 #11	CREBZF (ENSHGLG00000003083) #12	CCDC89 (ENSHGLG00000037872) #13	ENSHGLG00000002340 #14	CCDC83 (ENSHGLG00000036065) #16	PICALM (ENSHGLG00000001052) #17	ENSHGLG00000001667	EED (ENSHGLG00000001511) #18	ENSHGLG00000041908	CCDC81 (ENSHGLG00000001095) #20	ENSHGLG00000038302	ENSHGLG00000001103	ME3 (ENSHGLG00000001044) #21	ENSHGLG00000000902	PRSS23 (ENSHGLG00000047569) #22	FZD4 (ENSHGLG00000000698) #23	ENSHGLG00000032437	ENSHGLG00000043753	TMEM135 (ENSHGLG00000001739) #24	ENSHGLG00000045425	ENSHGLG00000034306	RAB38 (ENSHGLG00000041890) #25	CTSC (ENSHGLG00000001420) #26	ENSHGLG00000042131	ENSHGLG00000046021	GRM5 (ENSHGLG00000001307) #27	TYR (ENSHGLG00000001054) #29	ENSHGLG00000000730 #30	ENSHGLG00000047307	FOLH1 (ENSHGLG00000005991) #31
Hystricomorpha_a	ANCESTRAL SPECIES	10	ENSGT00940000154216.a	ENSGT00940000155453.n.b.b	ENSGT00940000155156.b	ENSGT00520000055616.b #10	ENSGT00520000055616.a #11	ENSGT00390000016589 #12	ENSGT00390000016046 #13	ENSGT00940000155843 #14	ENSGT00390000013087 #16	ENSGT00900000143390	ENSGT00950000183068.a.b #17	ENSGT00510000047334 #18	ENSGT00390000004056 #19	ENSGT00390000011985 #20	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b #25	ENSGT00940000155787 #26	ENSGT01030000234595.A.a #27	ENSGT00940000155336 #29	ENSGT00940000159621 #30	ENSGT01030000234598.b.a.b.k.a #31	ENSGT01030000234598.b.a.b.k.b ##31	ENSGT00940000154174.f	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117	ENSGT00940000153190.B.a	ENSGT00390000015987
Guinea pig	MODERN SPECIES	40	RAB30 (ENSCPOG00000005047)	PCF11 (ENSCPOG00000004103)	ANKRD42 (ENSCPOG00000011236)	CCDC90B (ENSCPOG00000011822)	DLG2 (ENSCPOG00000010885)	TMEM126B (ENSCPOG00000000924) #10	TMEM126A (ENSCPOG00000032709) #11	CREBZF (ENSCPOG00000000925) #12	ENSCPOG00000006998 #14	CCDC83 (ENSCPOG00000015279) #16	PICALM (ENSCPOG00000020758) #17	EED (ENSCPOG00000001815) #18	HIKESHI (ENSCPOG00000020182) #19	CCDC81 (ENSCPOG00000004853) #20	ME3 (ENSCPOG00000004861) #21	PRSS23 (ENSCPOG00000031160) #22	FZD4 (ENSCPOG00000014369) #23	TMEM135 (ENSCPOG00000033735) #24	RAB38 (ENSCPOG00000033635) #25	CTSC (ENSCPOG00000014848) #26	GRM5 (ENSCPOG00000009056) #27	ENSCPOG00000039497	TYR (ENSCPOG00000010608) #29	NOX4 (ENSCPOG00000040335) #30	FOLH1 (ENSCPOG00000003797) #31	NAALAD2 (ENSCPOG00000038440) ##31	CHORDC1 (ENSCPOG00000022614)	ENSCPOG00000010626	MTNR1B (ENSCPOG00000010637)	SLC36A4 (ENSCPOG00000036098)	DEUP1 (ENSCPOG00000011016)
Hystricomorpha_b	ANCESTRAL SPECIES	5	ENSGT00940000154216.a	ENSGT00940000155453.n.b.a.a.b	ENSGT00940000155156.b	ENSGT00520000055616.b #10	ENSGT00520000055616.a #11	ENSGT00390000016589 #12	ENSGT00390000016046 #13	ENSGT00940000155843 #14	ENSGT00390000013087 #16	ENSGT00900000143390	ENSGT00950000183068.a.b #17	ENSGT00510000047334 #18	ENSGT00390000004056 #19	ENSGT00390000011985 #20	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b #25	ENSGT00940000155787 #26	ENSGT01030000234595.A.a #27	ENSGT00940000155336 #29	ENSGT00940000159621 #30	ENSGT01030000234598.b.a.b.k.a #31	ENSGT01030000234598.b.a.b.k.b ##31	ENSGT00940000154174.f	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117	ENSGT00940000153190.B.a	ENSGT00390000015987
Long-tailed chinchilla	MODERN SPECIES	121	ANKRD42 (ENSCLAG00000015518)	CCDC90B (ENSCLAG00000015859)	ENSCLAG00000014879	DLG2 (ENSCLAG00000013708)	TMEM126B (ENSCLAG00000015945) #10	TMEM126A (ENSCLAG00000013581) #11	CREBZF (ENSCLAG00000014349) #12	CCDC89 (ENSCLAG00000018101) #13	ENSCLAG00000015658 #14	CCDC83 (ENSCLAG00000013107) #16	PICALM (ENSCLAG00000014073) #17	EED (ENSCLAG00000014597) #18	HIKESHI (ENSCLAG00000015127) #19	CCDC81 (ENSCLAG00000015703) #20	ME3 (ENSCLAG00000014004) #21	PRSS23 (ENSCLAG00000014382) #22	FZD4 (ENSCLAG00000013230) #23	TMEM135 (ENSCLAG00000012648) #24	RAB38 (ENSCLAG00000013006) #25	CTSC (ENSCLAG00000015662) #26	ENSCLAG00000014570 #27	TYR (ENSCLAG00000016284) #29	ENSCLAG00000013267	NOX4 (ENSCLAG00000014011) #30	FOLH1 (ENSCLAG00000014594) #31	NAALAD2 (ENSCLAG00000012474) ##31	ENSCLAG00000014963	FAT3 (ENSCLAG00000013669)	ENSCLAG00000012677	MTNR1B (ENSCLAG00000012055)	SLC36A4 (ENSCLAG00000015872)
Degu	MODERN SPECIES	90	DLG2 (ENSODEG00000004167)	ENSODEG00000004281	TMEM126B (ENSODEG00000004299) #10	ENSODEG00000004318 #11	CREBZF (ENSODEG00000004328) #12	CCDC89 (ENSODEG00000004335) #13	ENSODEG00000004345 #14	ENSODEG00000004377	CCDC83 (ENSODEG00000004398) #16	PICALM (ENSODEG00000004438) #17	ENSODEG00000004459	ENSODEG00000004489 #18	ENSODEG00000005068 #19	CCDC81 (ENSODEG00000005105) #20	ME3 (ENSODEG00000005138) #21	PRSS23 (ENSODEG00000019151) #22	FZD4 (ENSODEG00000005182) #23	TMEM135 (ENSODEG00000005219) #24
Rodentia_B	ANCESTRAL SPECIES	33	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b #10	ENSGT00520000055616.a #11	ENSGT00390000016589 #12	ENSGT00390000016046 #13	ENSGT00940000155843 #14	ENSGT00390000013087 #16	ENSGT00950000183068.a.b #17	ENSGT00510000047334 #18	ENSGT00390000004056 #19	ENSGT00390000011985 #20	ENSGT00940000164723	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b #25	ENSGT00940000155787 #26	ENSGT01030000234595.A.a #27	ENSGT00940000155336 #29	ENSGT00940000159621 #30	ENSGT01030000234598.b.a.b.k.a #31
Myomorpha	ANCESTRAL SPECIES	13	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b #10	ENSGT00520000055616.a #11	ENSGT00390000016589 #12	ENSGT00390000016046 #13	ENSGT00940000155843 #14	ENSGT00390000013087 #16	ENSGT00950000183068.a.b #17	ENSGT00510000047334 #18	ENSGT00390000004056 #19	ENSGT00390000011985 #20	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b #25	ENSGT00940000155787 #26	ENSGT01030000234595.A.a #27	ENSGT00940000155336 #29	ENSGT00940000159621 #30	ENSGT01030000234598.b.a.b.k.a #31	ENSGT01100000263570.A	ENSGT01090000260024.A.a.b.a.a	ENSGT01050000244828.c.b.b.b.c.a.a.a	ENSGT01090000260086.E.b	ENSGT00940000162666	ENSGT00940000160833	ENSGT00390000008646
Muroidea	ANCESTRAL SPECIES	12	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b #10	ENSGT00520000055616.a #11	ENSGT00390000016589 #12	ENSGT00390000016046 #13	ENSGT00940000155843 #14	ENSGT00390000013087 #16	ENSGT00950000183068.a.b #17	ENSGT00510000047334 #18	ENSGT00390000004056 #19	ENSGT00390000011985 #20	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b #25	ENSGT00940000155787 #26	ENSGT01030000234595.A.a #27	ENSGT00940000155336 #29	ENSGT00940000159621 #30	ENSGT01030000234598.b.a.b.k.a #31	ENSGT01100000263570.A	ENSGT01090000260024.A.a.b.a.a	ENSGT01050000244828.c.b.b.b.c.a.a.a	ENSGT01090000260086.E.b	ENSGT00940000162666	ENSGT00940000160833	ENSGT00390000008646
Muroidea_A	ANCESTRAL SPECIES		ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b #10	ENSGT00520000055616.a #11	ENSGT00390000016589 #12	ENSGT00390000016046 #13	ENSGT00940000155843 #14	ENSGT00390000013087 #16	ENSGT00950000183068.a.b #17	ENSGT00510000047334 #18	ENSGT00390000004056 #19	ENSGT00390000011985 #20	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b #25	ENSGT00940000155787 #26	ENSGT01030000234595.A.a #27	ENSGT00940000155336 #29	ENSGT00940000159621 #30	ENSGT01030000234598.b.a.b.k.a #31	ENSGT01100000263570.A	ENSGT01090000260024.A.a.b.a.a	ENSGT01050000244828.c.b.b.b.c.a.a.a.c	ENSGT01050000244828.c.b.b.b.c.a.a.a.d.a	ENSGT01090000260086.E.b	ENSGT00940000162666	ENSGT01060000248581.C.a.a
Cricetidae	ANCESTRAL SPECIES	1	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b #10	ENSGT00520000055616.a #11	ENSGT00390000016589 #12	ENSGT00390000016046 #13	ENSGT00940000155843 #14	ENSGT00390000013087 #16	ENSGT00950000183068.a.b #17	ENSGT00510000047334 #18	ENSGT00390000004056 #19	ENSGT00390000011985 #20	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b #25	ENSGT00940000155787 #26	ENSGT01030000234595.A.a #27	ENSGT00940000155336 #29	ENSGT00940000159621 #30	ENSGT01030000234598.b.a.b.k.a #31	ENSGT01100000263570.A	ENSGT01090000260024.A.a.b.a.a	ENSGT01050000244828.c.b.b.b.c.a.a.a.c	ENSGT01050000244828.c.b.b.b.c.a.a.a.d.a.a	ENSGT01090000260086.E.b	ENSGT00940000162666	ENSGT01060000248581.C.a.a
Cricetinae	ANCESTRAL SPECIES	15	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b #10	ENSGT00520000055616.a #11	ENSGT00390000016589 #12	ENSGT00390000016046 #13	ENSGT00940000155843 #14	ENSGT00390000013087 #16	ENSGT00950000183068.a.b #17	ENSGT00510000047334 #18	ENSGT00390000004056 #19	ENSGT00390000011985 #20	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b #25	ENSGT00940000155787 #26	ENSGT01030000234595.A.a #27	ENSGT00940000155336 #29	ENSGT00940000159621 #30	ENSGT01030000234598.b.a.b.k.a #31	ENSGT01050000244828.c.b.b.b.c.a.a.a.d.a.a.a	ENSGT01090000260086.E.b	ENSGT00940000162666	ENSGT01060000248581.C.a.a	ENSGT00940000160833	ENSGT00390000008646	ENSGT00960000186669
Chinese hamster chok1gshd	MODERN SPECIES	101	ENSCGRG00001006228	ENSCGRG00001004849	ENSCGRG00001020141	Tmem126b (ENSCGRG00001018676) #10	ENSCGRG00001000040 #11	Crebzf (ENSCGRG00001009481) #12	Ccdc89 (ENSCGRG00001000722) #13	ENSCGRG00001008518 #14	Ccdc83 (ENSCGRG00001016931) #16	ENSCGRG00001005565	Picalm (ENSCGRG00001023935) #17	Eed (ENSCGRG00001002220) #18	Hikeshi (ENSCGRG00001021205) #19	Ccdc81 (ENSCGRG00001021860) #20	Me3 (ENSCGRG00001000087) #21	Prss23 (ENSCGRG00001008698) #22	Fzd4 (ENSCGRG00001017396) #23	Tmem135 (ENSCGRG00001023218) #24	Rab38 (ENSCGRG00001014873) #25	Ctsc (ENSCGRG00001006267) #26	Grm5 (ENSCGRG00001009560) #27	Tyr (ENSCGRG00001019343) #29	Nox4 (ENSCGRG00001000979) #30	Folh1 (ENSCGRG00001000536) #31	ENSCGRG00001012337	ENSCGRG00001014707	ENSCGRG00001011155	ENSCGRG00001000891	Or6aa1 (ENSCGRG00001011705)	ENSCGRG00001011486	ENSCGRG00001011785
Golden Hamster	MODERN SPECIES	660	Ccdc90b (ENSMAUG00000021266)	Dlg2 (ENSMAUG00000012498)	Tmem126b (ENSMAUG00000014289) #10	Tmem126a (ENSMAUG00000016002) #11	Crebzf (ENSMAUG00000010774) #12	Ccdc89 (ENSMAUG00000005748) #13	ENSMAUG00000017590 #14	ENSMAUG00000000412 #14	Ccdc83 (ENSMAUG00000008122) #16	Picalm (ENSMAUG00000011448) #17	ENSMAUG00000019033 #18	ENSMAUG00000014854 #19	Ccdc81 (ENSMAUG00000001944) #20	ENSMAUG00000007180 #21	ENSMAUG00000012259 #21	Prss23 (ENSMAUG00000010049) #22
Cricetidae_B	ANCESTRAL SPECIES	26	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00990000214054	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00390000016589 #12	ENSGT00390000016046 #13	ENSGT00940000155843 #14	ENSGT00950000183068.a.b #17	ENSGT00510000047334 #18	ENSGT00390000004056 #19	ENSGT00390000011985 #20	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b #25	ENSGT00940000155787 #26	ENSGT01030000234595.A.a #27	ENSGT00940000155336 #29	ENSGT00940000159621 #30	ENSGT01030000234598.b.a.b.k.a #31	ENSGT01050000244828.c.b.b.b.c.a.a.a.d.a.a	ENSGT01090000260024.A.a.b.a.a	ENSGT01050000244828.c.b.b.b.c.a.a.a.c	ENSGT01090000260086.E.b	ENSGT00940000162666
Northern American deer mouse	MODERN SPECIES		Arap1 (ENSPEMG00000021221)	ENSPEMG00000030063	Pde2a (ENSPEMG00000026748)	ENSPEMG00000029000	ENSPEMG00000025401	ENSPEMG00000019643 #11	Ccdc89 (ENSPEMG00000013266) #13	ENSPEMG00000019500 #14	ENSPEMG00000028604	Picalm (ENSPEMG00000020088) #17	Eed (ENSPEMG00000019315) #18	Hikeshi (ENSPEMG00000020488) #19	Ccdc81 (ENSPEMG00000017793) #20	Me3 (ENSPEMG00000001307) #21	ENSPEMG00000027884	Prss23 (ENSPEMG00000015023) #22	Fzd4 (ENSPEMG00000000061) #23	Tmem135 (ENSPEMG00000009485) #24	ENSPEMG00000014375	Rab38 (ENSPEMG00000022645) #25	Ctsc (ENSPEMG00000023091) #26	Grm5 (ENSPEMG00000022095) #27	Tyr (ENSPEMG00000023104) #29	Nox4 (ENSPEMG00000021901) #30	Folh1 (ENSPEMG00000022051) #31	ENSPEMG00000025927	ENSPEMG00000027271	ENSPEMG00000008122	ENSPEMG00000000698	ENSPEMG00000029698	ENSPEMG00000023494
Prairie vole	MODERN SPECIES	9	ENSMOCG00000012985	Prcp (ENSMOCG00000012404)	ENSMOCG00000009821	Pcf11 (ENSMOCG00000001560)	Ankrd42 (ENSMOCG00000000292)	Ccdc90b (ENSMOCG00000020349)	ENSMOCG00000020913	ENSMOCG00000019058 #12	Ccdc89 (ENSMOCG00000008424) #13	ENSMOCG00000014020 #14	Picalm (ENSMOCG00000010921) #17	Eed (ENSMOCG00000000447) #18	ENSMOCG00000019586 #19	Ccdc81 (ENSMOCG00000007045) #20	Me3 (ENSMOCG00000005796) #21	Prss23 (ENSMOCG00000022033) #22	ENSMOCG00000007773	Tenm4 (ENSMOCG00000007967)	Nars2 (ENSMOCG00000004938)	Gab2 (ENSMOCG00000016973)	Usp35 (ENSMOCG00000015178)	Kctd21 (ENSMOCG00000009332)	Alg8 (ENSMOCG00000018035)	Ndufc2 (ENSMOCG00000014768)	Thrsp (ENSMOCG00000014398)	Ints4 (ENSMOCG00000015641)	Aamdc (ENSMOCG00000013242)	Rsf1 (ENSMOCG00000018606)	ENSMOCG00000015937	Aqp11 (ENSMOCG00000015165)	Pak1 (ENSMOCG00000012909)
Murinae	ANCESTRAL SPECIES		ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b #10	ENSGT00520000055616.a #11	ENSGT00390000016589 #12	ENSGT00390000016046 #13	ENSGT00940000155843 #14	ENSGT00390000013087 #16	ENSGT00950000183068.a.b #17	ENSGT00510000047334 #18	ENSGT00390000004056 #19	ENSGT00390000011985 #20	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b #25	ENSGT00940000155787 #26	ENSGT01030000234595.A.a #27	ENSGT00940000155336 #29	ENSGT00940000159621 #30	ENSGT00950000183069.b.b.a.b.c.b.a.b.e	ENSGT01030000234598.b.a.b.k.a #31	ENSGT01100000263570.A.m.b.b	ENSGT01050000244828.c.b.b.b.c.a.a.a.c.b	ENSGT01100000263570.A.m.a.a	ENSGT01100000263570.A.m.a.b	ENSGT01090000260024.A.a.b.a.a	ENSGT01050000244828.c.b.b.b.c.a.a.a.c.a
Mus	ANCESTRAL SPECIES		ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b #10	ENSGT00520000055616.a #11	ENSGT00390000016589 #12	ENSGT00390000016046 #13	ENSGT00940000155843 #14	ENSGT00390000013087 #16	ENSGT00950000183068.a.b #17	ENSGT00900000143322	ENSGT00510000047334 #18	ENSGT00390000004056 #19	ENSGT00390000011985 #20	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b #25	ENSGT00940000155787 #26	ENSGT01030000234595.A.a #27	ENSGT00940000155336 #29	ENSGT00940000159621 #30	ENSGT00950000183069.b.b.a.b.c.b.a.b.e.a	ENSGT01030000234598.b.a.b.k.a #31	ENSGT01100000263570.A.m.b.b.b	ENSGT01100000263570.A.m.a.b	ENSGT01090000260024.A.a.b.a.a	ENSGT01050000244828.c.b.b.b.c.a.a.a.c.a	ENSGT01050000244828.c.b.b.b.c.a.a.a.d.b	ENSGT01050000244828.c.b.b.b.c.a.a.a.d.a
Mus_A	ANCESTRAL SPECIES	1	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b #10	ENSGT00520000055616.a #11	ENSGT00390000016589 #12	ENSGT00390000016046 #13	ENSGT00940000155843 #14	ENSGT00390000013087 #16	ENSGT00950000183068.a.b #17	ENSGT00900000143322	ENSGT00510000047334 #18	ENSGT00390000004056 #19	ENSGT00390000011985 #20	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b #25	ENSGT00940000155787 #26	ENSGT01030000234595.A.a #27	ENSGT00940000155336 #29	ENSGT00940000159621 #30	ENSGT00950000183069.b.b.a.b.c.b.a.b.e.a	ENSGT00950000183069.b.b.a.b.c.b.a.b.e.b	ENSGT01030000234598.b.a.b.k.a #31	ENSGT01100000263570.A.m.b.b.b	ENSGT01100000263570.A.m.a.b	ENSGT01090000260024.A.a.b.a.a	ENSGT01050000244828.c.b.b.b.c.a.a.a.c.a	ENSGT01050000244828.c.b.b.b.c.a.a.a.d.b
Mus_B	ANCESTRAL SPECIES		ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b #10	ENSGT00520000055616.a #11	ENSGT00390000016589 #12	ENSGT00390000016046 #13	ENSGT00940000155843 #14	ENSGT00390000013087 #16	ENSGT00950000183068.a.b #17	ENSGT00900000143322	ENSGT00510000047334 #18	ENSGT00390000004056 #19	ENSGT00390000011985 #20	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b #25	ENSGT00940000155787 #26	ENSGT01030000234595.A.a #27	ENSGT00940000155336 #29	ENSGT00940000159621 #30	ENSGT00950000183069.b.b.a.b.c.b.a.b.e.a.a	ENSGT00950000183069.b.b.a.b.c.b.a.b.e.a.b	ENSGT00950000183069.b.b.a.b.c.b.a.b.e.b	ENSGT01030000234598.b.a.b.k.a #31	ENSGT01100000263570.A.m.b.b.b	ENSGT01100000263570.A.m.b.a	ENSGT01050000244828.c.b.b.b.c.a.a.a.c.b.c	ENSGT01100000263570.A.m.b.b.a.a
Mouse	MODERN SPECIES	16	Pcf11 (ENSMUSG00000041328)	Ankrd42 (ENSMUSG00000041343)	Ccdc90b (ENSMUSG00000030613)	Dlg2 (ENSMUSG00000052572)	Tmem126b (ENSMUSG00000030614) #10	Tmem126a (ENSMUSG00000030615) #11	Crebzf (ENSMUSG00000051451) #12	Ccdc89 (ENSMUSG00000044362) #13	Sytl2 (ENSMUSG00000030616) #14	Ccdc83 (ENSMUSG00000030617) #16	Picalm (ENSMUSG00000039361) #17	Eed (ENSMUSG00000030619) #18	Hikeshi (ENSMUSG00000062797) #19	Ccdc81 (ENSMUSG00000039391) #20	Me3 (ENSMUSG00000030621) #21	Prss23 (ENSMUSG00000039405) #22	Fzd4 (ENSMUSG00000049791) #23	Tmem135 (ENSMUSG00000039428) #24	Rab38 (ENSMUSG00000030559) #25	Ctsc (ENSMUSG00000030560) #26	Grm5 (ENSMUSG00000049583) #27	Tyr (ENSMUSG00000004651) #29	Nox4 (ENSMUSG00000030562) #30	Vmn2r79 (ENSMUSG00000090362)	Vmn2r78 (ENSMUSG00000091962)	Vmn2r77 (ENSMUSG00000090949)	Folh1 (ENSMUSG00000001773) #31	Or14c39 (ENSMUSG00000060688)	Or14c40 (ENSMUSG00000063394)	Or14a256 (ENSMUSG00000062042)	Or14c41 (ENSMUSG00000059319)
Mus_C	ANCESTRAL SPECIES	13	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b #10	ENSGT00520000055616.a #11	ENSGT00390000016589 #12	ENSGT00390000016046 #13	ENSGT00940000155843 #14	ENSGT00390000013087 #16	ENSGT00950000183068.a.b #17	ENSGT00900000143322	ENSGT00510000047334 #18	ENSGT00390000004056 #19	ENSGT00390000011985 #20	ENSGT00950000183134.c.a.a #21	ENSGT00900000143351	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b #25	ENSGT00940000155787 #26	ENSGT01030000234595.A.a #27	ENSGT00940000155336 #29	ENSGT00940000159621 #30	ENSGT00950000183069.b.b.a.b.c.b.a.b.e.a.a	ENSGT00950000183069.b.b.a.b.c.b.a.b.e.a.b	ENSGT00950000183069.b.b.a.b.c.b.a.b.e.b	ENSGT01030000234598.b.a.b.k.a #31	ENSGT01100000263570.A.m.b.b.b	ENSGT01100000263570.A.m.b.a	ENSGT01050000244828.c.b.b.b.c.a.a.a.c.b.c	ENSGT01100000263570.A.m.b.b.a.a
Steppe mouse	MODERN SPECIES	3267					Tmem126a (ENSMSIG00000004649) #11	Crebzf (ENSMSIG00000004643) #12	Ccdc89 (ENSMSIG00000004633) #13	ENSMSIG00000004302 #14	Ccdc83 (ENSMSIG00000004142) #16	Picalm (ENSMSIG00000002381) #17	ENSMSIG00000002305	Eed (ENSMSIG00000002163) #18	Hikeshi (ENSMSIG00000002062) #19	Ccdc81 (ENSMSIG00000002033) #20	Me3 (ENSMSIG00000001983) #21	Prss23 (ENSMSIG00000001970) #22	Fzd4 (ENSMSIG00000001959) #23	Tmem135 (ENSMSIG00000001854) #24	Rab38 (ENSMSIG00000001797) #25	Ctsc (ENSMSIG00000001732) #26	Grm5 (ENSMSIG00000001662) #27	Tyr (ENSMSIG00000001626) #29	ENSMSIG00000001617	ENSMSIG00000001407 #30	ENSMSIG00000001350	Vmn2r78 (ENSMSIG00000001291)	Vmn2r77 (ENSMSIG00000001225)	Folh1 (ENSMSIG00000001146) #31	Or14c39 (ENSMSIG00000001136)	Or14c40 (ENSMSIG00000001128)	Or14a256 (ENSMSIG00000001124)
spretus	MODERN SPECIES	16	Ccdc90b (MGP_SPRETEiJ_G0031099)	Dlg2 (MGP_SPRETEiJ_G0031098)	Tmem126b (MGP_SPRETEiJ_G0031097) #10	Tmem126a (MGP_SPRETEiJ_G0031096) #11	Crebzf (MGP_SPRETEiJ_G0031095) #12	Ccdc89 (MGP_SPRETEiJ_G0031094) #13	MGP_SPRETEiJ_G0031093 #14	Ccdc83 (MGP_SPRETEiJ_G0031092) #16	Picalm (MGP_SPRETEiJ_G0031091) #17	MGP_SPRETEiJ_G0031090	Eed (MGP_SPRETEiJ_G0031089) #18	Hikeshi (MGP_SPRETEiJ_G0031088) #19	Ccdc81 (MGP_SPRETEiJ_G0031087) #20	Me3 (MGP_SPRETEiJ_G0031086) #21	MGP_SPRETEiJ_G0031085	Prss23 (MGP_SPRETEiJ_G0031084) #22	Fzd4 (MGP_SPRETEiJ_G0031083) #23	Tmem135 (MGP_SPRETEiJ_G0031082) #24	Rab38 (MGP_SPRETEiJ_G0031081) #25	Ctsc (MGP_SPRETEiJ_G0031080) #26	Grm5 (MGP_SPRETEiJ_G0031079) #27	Tyr (MGP_SPRETEiJ_G0031078) #29	Nox4 (MGP_SPRETEiJ_G0031077) #30	MGP_SPRETEiJ_G0031076	MGP_SPRETEiJ_G0031075	Folh1 (MGP_SPRETEiJ_G0031074) #31	MGP_SPRETEiJ_G0031073	MGP_SPRETEiJ_G0031072	Or14c40 (MGP_SPRETEiJ_G0031071)	MGP_SPRETEiJ_G0031070	MGP_SPRETEiJ_G0031069
Ryukyu mouse	MODERN SPECIES	16	Ccdc90b (MGP_CAROLIEiJ_G0029989)	Dlg2 (MGP_CAROLIEiJ_G0029988)	Tmem126b (MGP_CAROLIEiJ_G0029987) #10	MGP_CAROLIEiJ_G0029986 #11	Crebzf (MGP_CAROLIEiJ_G0029985) #12	Ccdc89 (MGP_CAROLIEiJ_G0029984) #13	MGP_CAROLIEiJ_G0029983 #14	Ccdc83 (MGP_CAROLIEiJ_G0029982) #16	Picalm (MGP_CAROLIEiJ_G0029981) #17	MGP_CAROLIEiJ_G0029980	Eed (MGP_CAROLIEiJ_G0029979) #18	Hikeshi (MGP_CAROLIEiJ_G0029978) #19	Ccdc81 (MGP_CAROLIEiJ_G0029977) #20	Me3 (MGP_CAROLIEiJ_G0029976) #21	MGP_CAROLIEiJ_G0029975	Prss23 (MGP_CAROLIEiJ_G0029974) #22	Fzd4 (MGP_CAROLIEiJ_G0029973) #23	Tmem135 (MGP_CAROLIEiJ_G0029972) #24	Rab38 (MGP_CAROLIEiJ_G0029971) #25	Ctsc (MGP_CAROLIEiJ_G0029970) #26	Grm5 (MGP_CAROLIEiJ_G0029969) #27	Tyr (MGP_CAROLIEiJ_G0029968) #29	Nox4 (MGP_CAROLIEiJ_G0029967) #30	MGP_CAROLIEiJ_G0029966	Folh1 (MGP_CAROLIEiJ_G0029965) #31	Or14c39 (MGP_CAROLIEiJ_G0029964)	Or14a256 (MGP_CAROLIEiJ_G0029963)	Or14c45 (MGP_CAROLIEiJ_G0029962)	Or14c44 (MGP_CAROLIEiJ_G0029960)	Or6aa1 (MGP_CAROLIEiJ_G0029959)	Or14a258 (MGP_CAROLIEiJ_G0029958)
Shrew mouse	MODERN SPECIES		Ccdc90b (MGP_PahariEiJ_G0013209)	Dlg2 (MGP_PahariEiJ_G0013208)	MGP_PahariEiJ_G0013207 #10	MGP_PahariEiJ_G0013206 #11	Crebzf (MGP_PahariEiJ_G0013205) #12	Ccdc89 (MGP_PahariEiJ_G0013204) #13	MGP_PahariEiJ_G0013203 #14	Ccdc83 (MGP_PahariEiJ_G0013202) #16	Picalm (MGP_PahariEiJ_G0013201) #17	MGP_PahariEiJ_G0013200	Eed (MGP_PahariEiJ_G0013199) #18	Hikeshi (MGP_PahariEiJ_G0013198) #19	Ccdc81 (MGP_PahariEiJ_G0013197) #20	MGP_PahariEiJ_G0013196 #21	MGP_PahariEiJ_G0013195	Prss23 (MGP_PahariEiJ_G0013194) #22	Fzd4 (MGP_PahariEiJ_G0013193) #23	Tmem135 (MGP_PahariEiJ_G0013192) #24	Rab38 (MGP_PahariEiJ_G0013191) #25	Ctsc (MGP_PahariEiJ_G0013190) #26	Grm5 (MGP_PahariEiJ_G0013189) #27	Tyr (MGP_PahariEiJ_G0013188) #29	Nox4 (MGP_PahariEiJ_G0013187) #30	MGP_PahariEiJ_G0013186	MGP_PahariEiJ_G0013185	MGP_PahariEiJ_G0013184	Folh1 (MGP_PahariEiJ_G0013183) #31	Or14c39 (MGP_PahariEiJ_G0013182)	MGP_PahariEiJ_G0013181	MGP_PahariEiJ_G0013180	Or6aa1 (MGP_PahariEiJ_G0013179)
Rat	MODERN SPECIES		Ankrd42 (ENSRNOG00000009664)	Ccdc90b (ENSRNOG00000009462)	Dlg2 (ENSRNOG00000022635)	Tmem126b (ENSRNOG00000022732) #10	Tmem126a (ENSRNOG00000022748) #11	Crebzf (ENSRNOG00000018987) #12	LOC100911776 (ENSRNOG00000048071) #13	Sytl2 (ENSRNOG00000030776) #14	Ccdc83 (ENSRNOG00000052220) #16	Picalm (ENSRNOG00000018322) #17	Eed (ENSRNOG00000017509) #18	Hikeshi (ENSRNOG00000017383) #19	LOC102549852 (ENSRNOG00000022941)	Ccdc81 (ENSRNOG00000033733) #20	Me3 (ENSRNOG00000017311) #21	Prss23 (ENSRNOG00000017307) #22	Fzd4 (ENSRNOG00000063590) #23	Tmem135 (ENSRNOG00000016815) #24	Rab38 (ENSRNOG00000016769) #25	Ctsc (ENSRNOG00000016496) #26	Grm5 (ENSRNOG00000016429) #27	Tyr (ENSRNOG00000016421) #29	Nox4 (ENSRNOG00000013925) #30	ENSRNOG00000068544	Vom2r-ps67 (ENSRNOG00000033507)	Folh1 (ENSRNOG00000013770) #31	Or14c39 (ENSRNOG00000062805)	Or14a257c (ENSRNOG00000063878)	Or14c39b (ENSRNOG00000029233)	Or14a257b (ENSRNOG00000071184)	Or14a257 (ENSRNOG00000065989)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1254	Ankrd42 (ENSNGAG00000001127)	Ccdc90b (ENSNGAG00000018955)	Dlg2 (ENSNGAG00000013593)	Tmem126a (ENSNGAG00000000853) #11	ENSNGAG00000016917 #10	Crebzf (ENSNGAG00000013879) #12	Ccdc89 (ENSNGAG00000017955) #13	ENSNGAG00000007001 #14	Ccdc83 (ENSNGAG00000002487) #16	Picalm (ENSNGAG00000011828) #17	Eed (ENSNGAG00000020336) #18	Hikeshi (ENSNGAG00000017432) #19	Ccdc81 (ENSNGAG00000011335) #20	ENSNGAG00000000347	Me3 (ENSNGAG00000020611) #21	Prss23 (ENSNGAG00000014789) #22	Fzd4 (ENSNGAG00000011833) #23	ENSNGAG00000015588 #24	Rab38 (ENSNGAG00000012189) #25	Ctsc (ENSNGAG00000004920) #26	Grm5 (ENSNGAG00000000178) #27	Tyr (ENSNGAG00000013719) #29
Lesser Egyptian jerboa	MODERN SPECIES	65	ENSJJAG00000014690	ENSJJAG00000010286	Dlg2 (ENSJJAG00000023731)	Tmem126b (ENSJJAG00000012522) #10	Tmem126a (ENSJJAG00000008852) #11	Crebzf (ENSJJAG00000010759) #12	ENSJJAG00000010545 #14	ENSJJAG00000017139 #14	Ccdc83 (ENSJJAG00000017603) #16	ENSJJAG00000001614 #17	Eed (ENSJJAG00000016121) #18	Hikeshi (ENSJJAG00000012398) #19	ENSJJAG00000022293	Ccdc81 (ENSJJAG00000011496) #20	Me3 (ENSJJAG00000022815) #21	Prss23 (ENSJJAG00000010057) #22	Fzd4 (ENSJJAG00000008823) #23	Tmem135 (ENSJJAG00000013241) #24	Rab38 (ENSJJAG00000020660) #25	Ctsc (ENSJJAG00000010794) #26	Grm5 (ENSJJAG00000024148) #27	ENSJJAG00000003405 #27	Tyr (ENSJJAG00000005553) #29	Nox4 (ENSJJAG00000022117) #30	Folh1 (ENSJJAG00000021601) #31	ENSJJAG00000021619	ENSJJAG00000020270	ENSJJAG00000022515	Or6f1 (ENSJJAG00000009582)	ENSJJAG00000021968	Zfand6 (ENSJJAG00000013594)
Kangaroo rat	MODERN SPECIES	341	Ccdc90b (ENSDORG00000009418)	Dlg2 (ENSDORG00000010409)	Tmem126b (ENSDORG00000006407) #10	Tmem126a (ENSDORG00000026208) #11	ENSDORG00000006410 #14	ENSDORG00000025554 #14	Ccdc83 (ENSDORG00000006094) #16	Picalm (ENSDORG00000006095) #17	ENSDORG00000024919	ENSDORG00000027843	Eed (ENSDORG00000004240) #18	Hikeshi (ENSDORG00000026855) #19	Ccdc81 (ENSDORG00000004452) #20	ENSDORG00000028501	Me3 (ENSDORG00000004453) #21	Prss23 (ENSDORG00000023881) #22	Fzd4 (ENSDORG00000025486) #23	Tmem135 (ENSDORG00000011193) #24	ENSDORG00000028149	ENSDORG00000029361	Rab38 (ENSDORG00000002058) #25	Ctsc (ENSDORG00000014120) #26	Grm5 (ENSDORG00000001327) #27	ENSDORG00000024265	Tyr (ENSDORG00000002350) #29
Lagomorpha	ANCESTRAL SPECIES	5	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000155156.b	ENSGT00520000055616.b #10	ENSGT00520000055616.a #11	ENSGT00390000016589 #12	ENSGT00390000016046 #13	ENSGT00940000155843 #14	ENSGT00390000013087 #16	ENSGT00950000183068.a.b #17	ENSGT00510000047334 #18	ENSGT00390000004056 #19	ENSGT00390000011985 #20	ENSGT00940000164723	ENSGT00950000183134.c.a.a #21	ENSGT00390000000155.a.a #22	ENSGT00940000157141 #23	ENSGT00390000000303 #24	ENSGT00940000157301.b #25	ENSGT00940000155787 #26	ENSGT01030000234595.A.a #27	ENSGT00940000155336 #29	ENSGT00940000159621 #30	ENSGT01030000234598.b.a.b.k.a #31	ENSGT01030000234598.b.a.b.k.b ##31	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117	ENSGT00940000153190.B.a	ENSGT00390000015987
Rabbit	MODERN SPECIES		ENSOCUG00000016534 #11	CREBZF (ENSOCUG00000016544) #12	CCDC89 (ENSOCUG00000016547) #13	SYTL2 (ENSOCUG00000013753) #14	ENSOCUG00000033217	CCDC83 (ENSOCUG00000009770) #16	PICALM (ENSOCUG00000023809) #17	EED (ENSOCUG00000021263) #18	HIKESHI (ENSOCUG00000013108) #19	ENSOCUG00000037210	CCDC81 (ENSOCUG00000007318) #20	ENSOCUG00000027723	ME3 (ENSOCUG00000012005) #21	ENSOCUG00000031072	ENSOCUG00000036239	PRSS23 (ENSOCUG00000004137) #22	FZD4 (ENSOCUG00000006445) #23	TMEM135 (ENSOCUG00000000713) #24	ENSOCUG00000032429	ENSOCUG00000014522 #25	CTSC (ENSOCUG00000014527) #26	ENSOCUG00000012817 #27	ENSOCUG00000029319 #27	TYR (ENSOCUG00000009965) #29	NOX4 (ENSOCUG00000016685) #30	FOLH1 (ENSOCUG00000026120) #31	TRIM77 (ENSOCUG00000026390) #32	ENSOCUG00000008705 #34	ENSOCUG00000027036	ENSOCUG00000011049 #37	ENSOCUG00000036248
Pika	MODERN SPECIES	3533												ENSOPRG00000013844 #18	HIKESHI (ENSOPRG00000013869) #19	CCDC81 (ENSOPRG00000013884) #20	ME3 (ENSOPRG00000013901) #21	PRSS23 (ENSOPRG00000013925) #22	ENSOPRG00000013932 #23