Sarcopterygii	ANCESTRAL SPECIES	51	ENSGT00940000165760	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00840000130004 #16	ENSGT00940000157605 #17	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014547	ENSGT00940000155205	ENSGT00940000160265	ENSGT00390000014156 #20	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915	ENSGT00550000074840
Tetrapoda	ANCESTRAL SPECIES	24	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00840000130004 #16	ENSGT00940000157605 #17	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014547	ENSGT00940000159737	ENSGT00940000160865	ENSGT00940000155205	ENSGT00940000162038	ENSGT00390000014156 #20	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915	ENSGT00390000000237
Amniota	ANCESTRAL SPECIES	11	ENSGT00940000165760	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00840000130004 #16	ENSGT00940000157605 #17	ENSGT00940000154596.b #18	ENSGT00950000184989	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915	ENSGT00390000000237
Mammalia	ANCESTRAL SPECIES	11	ENSGT00940000165760	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00840000130004 #16	ENSGT00940000157605 #17	ENSGT00940000154596.b #18	ENSGT00950000184989	ENSGT00940000155825 #19	ENSGT00390000014547	ENSGT00960000187139	ENSGT00390000014156 #20	ENSGT01070000254102	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915	ENSGT00390000000237
Theria	ANCESTRAL SPECIES	10	ENSGT00940000158475 #10	ENSGT00940000165760	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00950000184989	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915	ENSGT00390000000237
Eutheria	ANCESTRAL SPECIES	22	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00840000130004 #16	ENSGT00940000157605 #17	ENSGT00940000154596.b #18	ENSGT00950000184989	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.A #33	ENSGT01050000244815.B.a.b.b #34	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36	ENSGT00950000182960.a.a.a.a.b.rb #37	ENSGT00950000182960.a.a.a.b ##37	ENSGT00390000015109	ENSGT00940000157099
Boreoeutheria	ANCESTRAL SPECIES	12	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000170143	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00960000187139	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b #34	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36
Euarchontoglires	ANCESTRAL SPECIES	12	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000170143	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00960000187139	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b #34	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36
Euarchontoglires_A	ANCESTRAL SPECIES	12	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00840000130004 #16	ENSGT00940000157605 #17	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00960000187139	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b #34	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36
Glires	ANCESTRAL SPECIES	11	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00840000130004 #16	ENSGT00940000157605 #17	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00960000187139	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b #34	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36
Rodentia	ANCESTRAL SPECIES	11	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00840000130004 #16	ENSGT00940000157605 #17	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00960000187139	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b #34	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36
Rodentia_B	ANCESTRAL SPECIES	29	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b #34	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36	ENSGT00950000182960.a.a.a.a.b.rb.i #37
Myomorpha	ANCESTRAL SPECIES	31	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b #34	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36	ENSGT00950000182960.a.a.a.a.b.rb.i #37
Muroidea	ANCESTRAL SPECIES	51	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00840000130004 #16	ENSGT00940000157605 #17	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b #34	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36	ENSGT00950000182960.a.a.a.a.b.rb.i #37
Muroidea_A	ANCESTRAL SPECIES	27	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b #34	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36	ENSGT00950000182960.a.a.a.a.b.rb.i #37
Murinae	ANCESTRAL SPECIES	28	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00840000130004 #16	ENSGT00940000157605 #17	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b #34	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36	ENSGT00950000182960.a.a.a.a.b.rb.i #37	ENSGT00390000015109
Mus	ANCESTRAL SPECIES	17	ENSGT00940000153560.b.b.a	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00840000130004 #16	ENSGT00940000157605 #17	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b #34	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36	ENSGT00950000182960.a.a.a.a.b.rb.i #37	ENSGT00390000015109
Mus_A	ANCESTRAL SPECIES	6	ENSGT00940000153560.b.b.a	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00840000130004 #16	ENSGT00940000157605 #17	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A.q.a #31	ENSGT00940000154173.A.r ##31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b #34	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36	ENSGT00950000182960.a.a.a.a.b.rb.i #37
Mus_B	ANCESTRAL SPECIES	4	ENSGT00940000153560.b.b.a	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00840000130004 #16	ENSGT00940000157605 #17	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156.e #20	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A.q.a #31	ENSGT00940000154173.A.r ##31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b #34	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36	ENSGT00950000182960.a.a.a.a.b.rb.i #37
Mouse	MODERN SPECIES	14	Bri3 (ENSMUSG00000047843) #7	Tecpr1 (ENSMUSG00000066621) #8	Bhlha15 (ENSMUSG00000052271) #9	Lmtk2 (ENSMUSG00000038970) #10	Ocm (ENSMUSG00000029618) #11	Ccz1 (ENSMUSG00000029617) #12	Rsph10b (ENSMUSG00000075569) #13	Pms2 (ENSMUSG00000079109) #14	Aimp2 (ENSMUSG00000029610) #15	Ankrd61 (ENSMUSG00000029607) #16	Eif2ak1 (ENSMUSG00000029613) #17	Usp42 (ENSMUSG00000051306) #18	Cyth3 (ENSMUSG00000018001) #19	Fam220a (ENSMUSG00000083012) #20	Fam220a (ENSMUSG00000118332) #21	Rac1 (ENSMUSG00000001847) #22	Daglb (ENSMUSG00000039206) #23	Kdelr2 (ENSMUSG00000079111) #24	Grid2ip (ENSMUSG00000010825) #25	Zdhhc4 (ENSMUSG00000001844) #26	Ints15 (ENSMUSG00000039244) #27	Zfp853 (ENSMUSG00000093910) #28	Zfp316 (ENSMUSG00000046658) #29	Zfp12 (ENSMUSG00000029587) #30	Spdye4a (ENSMUSG00000039296) #31	Spdye4b (ENSMUSG00000029586) #32	Rbak (ENSMUSG00000061898) #33	Or10ah1-ps1 (ENSMUSG00000090981) #34	Rnf216 (ENSMUSG00000045078) #35	Fscn1 (ENSMUSG00000029581) #36	Actb (ENSMUSG00000029580) #37
Mus_C	ANCESTRAL SPECIES	4	ENSGT01060000248591.a.a.a.a	ENSGT00940000153560.b.b.a	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A.q.a #31	ENSGT00940000154173.A.r ##31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b #34	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36	ENSGT00950000182960.a.a.a.a.b.rb.i #37
spretus	MODERN SPECIES	14	Bri3 (MGP_SPRETEiJ_G0029001) #7	Tecpr1 (MGP_SPRETEiJ_G0029000) #8	Bhlha15 (MGP_SPRETEiJ_G0028999) #9	Lmtk2 (MGP_SPRETEiJ_G0028998) #10	Ocm (MGP_SPRETEiJ_G0028997) #11	Ccz1 (MGP_SPRETEiJ_G0028996) #12	Rsph10b (MGP_SPRETEiJ_G0028995) #13	MGP_SPRETEiJ_G0028994 #14	Pms2 (MGP_SPRETEiJ_G0028993) #14	Aimp2 (MGP_SPRETEiJ_G0028992) #15	MGP_SPRETEiJ_G0028991 #16	Eif2ak1 (MGP_SPRETEiJ_G0028990) #17	Usp42 (MGP_SPRETEiJ_G0028989) #18	Cyth3 (MGP_SPRETEiJ_G0028988) #19	MGP_SPRETEiJ_G0028987	Rac1 (MGP_SPRETEiJ_G0028986) #22	Daglb (MGP_SPRETEiJ_G0028985) #23	Kdelr2 (MGP_SPRETEiJ_G0028984) #24	Grid2ip (MGP_SPRETEiJ_G0028983) #25	Zdhhc4 (MGP_SPRETEiJ_G0028982) #26	Ints15 (MGP_SPRETEiJ_G0028981) #27	MGP_SPRETEiJ_G0028980 #28	Zfp316 (MGP_SPRETEiJ_G0028979) #29	Zfp12 (MGP_SPRETEiJ_G0028978) #30	Spdye4a (MGP_SPRETEiJ_G0028977) #31	MGP_SPRETEiJ_G0028976 ##31	Rbak (MGP_SPRETEiJ_G0028975) #33	Rnf216 (MGP_SPRETEiJ_G0028974) #35	Fscn1 (MGP_SPRETEiJ_G0028973) #36	MGP_SPRETEiJ_G0028972 #37	Fbxl18 (MGP_SPRETEiJ_G0028971)
Ryukyu mouse	MODERN SPECIES	14	Tecpr1 (MGP_CAROLIEiJ_G0027997) #8	Bhlha15 (MGP_CAROLIEiJ_G0027996) #9	Lmtk2 (MGP_CAROLIEiJ_G0027995) #10	Ocm (MGP_CAROLIEiJ_G0027994) #11	Fpr-rs3 (MGP_CAROLIEiJ_G0027993)	Ccz1 (MGP_CAROLIEiJ_G0027992) #12	Rsph10b (MGP_CAROLIEiJ_G0027991) #13	MGP_CAROLIEiJ_G0027990 #14	Pms2 (MGP_CAROLIEiJ_G0027989) #14	Aimp2 (MGP_CAROLIEiJ_G0027988) #15	Ankrd61 (MGP_CAROLIEiJ_G0027987) #16	Eif2ak1 (MGP_CAROLIEiJ_G0027986) #17	Usp42 (MGP_CAROLIEiJ_G0027985) #18	Cyth3 (MGP_CAROLIEiJ_G0027984) #19	MGP_CAROLIEiJ_G0027983 #20	Rac1 (MGP_CAROLIEiJ_G0027982) #22	Daglb (MGP_CAROLIEiJ_G0027981) #23	Kdelr2 (MGP_CAROLIEiJ_G0027980) #24	Grid2ip (MGP_CAROLIEiJ_G0027979) #25	Zdhhc4 (MGP_CAROLIEiJ_G0027978) #26	Ints15 (MGP_CAROLIEiJ_G0027977) #27	MGP_CAROLIEiJ_G0027976 #28	Zfp316 (MGP_CAROLIEiJ_G0027975) #29	Zfp12 (MGP_CAROLIEiJ_G0027974) #30	Spdye4a (MGP_CAROLIEiJ_G0027973) #31	MGP_CAROLIEiJ_G0027972 ##31	Rbak (MGP_CAROLIEiJ_G0027971) #33	Rnf216 (MGP_CAROLIEiJ_G0027970) #35	Fscn1 (MGP_CAROLIEiJ_G0027969) #36	MGP_CAROLIEiJ_G0027968 #37	Fbxl18 (MGP_CAROLIEiJ_G0027967)
Shrew mouse	MODERN SPECIES	15	Bri3 (MGP_PahariEiJ_G0024569) #7	Tecpr1 (MGP_PahariEiJ_G0024568) #8	Bhlha15 (MGP_PahariEiJ_G0024567) #9	Lmtk2 (MGP_PahariEiJ_G0024566) #10	Ocm (MGP_PahariEiJ_G0024565) #11	Ccz1 (MGP_PahariEiJ_G0024564) #12	Rsph10b (MGP_PahariEiJ_G0024563) #13	MGP_PahariEiJ_G0024562	Pms2 (MGP_PahariEiJ_G0024561) #14	Aimp2 (MGP_PahariEiJ_G0024560) #15	Ankrd61 (MGP_PahariEiJ_G0024559) #16	Eif2ak1 (MGP_PahariEiJ_G0024558) #17	Usp42 (MGP_PahariEiJ_G0024557) #18	Cyth3 (MGP_PahariEiJ_G0024556) #19	MGP_PahariEiJ_G0024555 #20	Rac1 (MGP_PahariEiJ_G0024554) #22	Daglb (MGP_PahariEiJ_G0024553) #23	Kdelr2 (MGP_PahariEiJ_G0024552) #24	Grid2ip (MGP_PahariEiJ_G0024551) #25	Zdhhc4 (MGP_PahariEiJ_G0024550) #26	Ints15 (MGP_PahariEiJ_G0024549) #27	MGP_PahariEiJ_G0024548 #28	Zfp316 (MGP_PahariEiJ_G0024547) #29	Zfp12 (MGP_PahariEiJ_G0024546) #30	MGP_PahariEiJ_G0024545 #31	MGP_PahariEiJ_G0024544 #31	Rbak (MGP_PahariEiJ_G0024543) #33	Rnf216 (MGP_PahariEiJ_G0024542) #35	Fscn1 (MGP_PahariEiJ_G0024541) #36	MGP_PahariEiJ_G0024540 #37	Fbxl18 (MGP_PahariEiJ_G0024539)
Rat	MODERN SPECIES	3	Bri3 (ENSRNOG00000001009) #7	Tecpr1 (ENSRNOG00000001010) #8	Bhlha15 (ENSRNOG00000025164) #9	Lmtk2 (ENSRNOG00000025155) #10	Ocm (ENSRNOG00000001031) #11	Ccz1b (ENSRNOG00000001032) #12	Rsph10b (ENSRNOG00000001036) #13	Pms2 (ENSRNOG00000001040) #14	Aimp2 (ENSRNOG00000001044) #15	Eif2ak1 (ENSRNOG00000001050) #17	Ankrd61 (ENSRNOG00000001048) #16	Usp42 (ENSRNOG00000001059) #18	Cyth3 (ENSRNOG00000001065) #19	Fam220a (ENSRNOG00000024605) #20	ENSRNOG00000065731	Rac1 (ENSRNOG00000001068) #22	Daglb (ENSRNOG00000001079) #23	Kdelr2 (ENSRNOG00000001083) #24	Grid2ip (ENSRNOG00000030927) #25	Zdhhc4 (ENSRNOG00000051699) #26	Ints15 (ENSRNOG00000024567) #27	Zfp853 (ENSRNOG00000030579) #28	Zfp316 (ENSRNOG00000001094) #29	Zfp12 (ENSRNOG00000006958) #30	Spdye4 (ENSRNOG00000058563) #31	Rbak (ENSRNOG00000001099) #33	AABR07072272.1 (ENSRNOG00000029560)	LOC103693627 (ENSRNOG00000024527) #34	Rnf216 (ENSRNOG00000001101) #35	Fscn1 (ENSRNOG00000056585) #36	Actb (ENSRNOG00000034254) #37
Cricetidae	ANCESTRAL SPECIES	27	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713.g #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b #34	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36	ENSGT00950000182960.a.a.a.a.b.rb.i #37
Cricetidae_B	ANCESTRAL SPECIES	46	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713.g #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00840000130004 #16	ENSGT00940000157605 #17	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b #34	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36	ENSGT00950000182960.a.a.a.a.b.rb.i #37
Prairie vole	MODERN SPECIES	110	Baiap2l1 (ENSMOCG00000002763)	Bri3 (ENSMOCG00000007653) #7	Tecpr1 (ENSMOCG00000021771) #8	Lmtk2 (ENSMOCG00000019505) #10	Ocm (ENSMOCG00000005057) #11	Ccz1 (ENSMOCG00000018777) #12	Rsph10b (ENSMOCG00000018506) #13	ENSMOCG00000010177 #14	Aimp2 (ENSMOCG00000014024) #15	Ankrd61 (ENSMOCG00000005764) #16	Eif2ak1 (ENSMOCG00000006374) #17	Usp42 (ENSMOCG00000012009) #18	Cyth3 (ENSMOCG00000000807) #19	ENSMOCG00000019877	ENSMOCG00000013507	Rac1 (ENSMOCG00000016374) #22	Daglb (ENSMOCG00000000178) #23	Kdelr2 (ENSMOCG00000013926) #24	Grid2ip (ENSMOCG00000016662) #25	Zdhhc4 (ENSMOCG00000015434) #26	Ints15 (ENSMOCG00000007513) #27	Zfp316 (ENSMOCG00000009050) #29	Zfp12 (ENSMOCG00000011472) #30	ENSMOCG00000014198 #31	ENSMOCG00000016394 #31	Rbak (ENSMOCG00000019516) #33	Or10ah1-ps1 (ENSMOCG00000006986) #34	Rnf216 (ENSMOCG00000011081) #35	Fscn1 (ENSMOCG00000001115) #36	Actb (ENSMOCG00000004137) #37	Fbxl18 (ENSMOCG00000007883)
Northern American deer mouse	MODERN SPECIES	15	Bhlha15 (ENSPEMG00000009777) #9	Lmtk2 (ENSPEMG00000002227) #10	Ocm (ENSPEMG00000023404) #11	Ccz1 (ENSPEMG00000007600) #12	Rsph10b (ENSPEMG00000017010) #13	Pms2 (ENSPEMG00000009009) #14	Aimp2 (ENSPEMG00000023504) #15	Ankrd61 (ENSPEMG00000023381) #16	Eif2ak1 (ENSPEMG00000023964) #17	Usp42 (ENSPEMG00000023210) #18	Cyth3 (ENSPEMG00000023607) #19	ENSPEMG00000024425	ENSPEMG00000024276 #20	ENSPEMG00000028777	ENSPEMG00000024532	Rac1 (ENSPEMG00000023796) #22	Daglb (ENSPEMG00000022539) #23	Kdelr2 (ENSPEMG00000023934) #24	Grid2ip (ENSPEMG00000021559) #25	ENSPEMG00000026127	ENSPEMG00000022156 #26	ENSPEMG00000027536	Ints15 (ENSPEMG00000021833) #27	Zfp853 (ENSPEMG00000022955) #28	ENSPEMG00000027296 #29	Zfp12 (ENSPEMG00000023887) #30	Rbak (ENSPEMG00000018899) #33	ENSPEMG00000029392	ENSPEMG00000025613	Zfp157 (ENSPEMG00000027605)	ENSPEMG00000029023
Cricetinae	ANCESTRAL SPECIES	19	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713.g #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b #34	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36	ENSGT00950000182960.a.a.a.a.b.rb.i #37	ENSGT00390000015109
Chinese hamster chok1gshd	MODERN SPECIES	130	Bri3 (ENSCGRG00001003030) #7	Tecpr1 (ENSCGRG00001010075) #8	Bhlha15 (ENSCGRG00001003090) #9	Lmtk2 (ENSCGRG00001005742) #10	Ocm (ENSCGRG00001020230) #11	Ccz1 (ENSCGRG00001021911) #12	Rsph10b (ENSCGRG00001001878) #13	Pms2 (ENSCGRG00001007988) #14	AIMP2 (ENSCGRG00001017144) #15	Eif2ak1 (ENSCGRG00001018205) #17	Ankrd61 (ENSCGRG00001021200) #16	Usp42 (ENSCGRG00001024720) #18	Cyth3 (ENSCGRG00001002265) #19	ENSCGRG00001022741 #20	ENSCGRG00001016103	Rac1 (ENSCGRG00001014453) #22	Daglb (ENSCGRG00001016453) #23	Kdelr2 (ENSCGRG00001012223) #24	Grid2ip (ENSCGRG00001021698) #25	Zdhhc4 (ENSCGRG00001023712) #26	Ints15 (ENSCGRG00001024717) #27	Zfp853 (ENSCGRG00001024977) #28	Zfp316 (ENSCGRG00001003920) #29	Zfp12 (ENSCGRG00001012589) #30	ENSCGRG00001018273 #31	ENSCGRG00001012184 #31	Rbak (ENSCGRG00001014657) #33	Or10ah1-ps1 (ENSCGRG00001001645) #34	Rnf216 (ENSCGRG00001010303) #35	Fscn1 (ENSCGRG00001011181) #36	Actb (ENSCGRG00001015781) #37
Golden Hamster	MODERN SPECIES	712	Baiap2l1 (ENSMAUG00000008280)	Bri3 (ENSMAUG00000000701) #7	Tecpr1 (ENSMAUG00000008072) #8	Lmtk2 (ENSMAUG00000014353) #10	Ocm (ENSMAUG00000016041) #11	Ccz1 (ENSMAUG00000004705) #12	ENSMAUG00000011345 #13	ENSMAUG00000014015 #14	Aimp2 (ENSMAUG00000008325) #15	Eif2ak1 (ENSMAUG00000020353) #17	Ankrd61 (ENSMAUG00000007269) #16	Usp42 (ENSMAUG00000014275) #18	Cyth3 (ENSMAUG00000022079) #19	ENSMAUG00000016388 #20	ENSMAUG00000004039	Rac1 (ENSMAUG00000017557) #22	Daglb (ENSMAUG00000020489) #23	Kdelr2 (ENSMAUG00000019623) #24	Grid2ip (ENSMAUG00000014248) #25	Zdhhc4 (ENSMAUG00000012510) #26	Ints15 (ENSMAUG00000018145) #27	Zfp853 (ENSMAUG00000016640) #28	Zfp316 (ENSMAUG00000006651) #29	Zfp12 (ENSMAUG00000009697) #30	ENSMAUG00000014029 #31	Rbak (ENSMAUG00000015743) #33	Or10ah1-ps1 (ENSMAUG00000006192) #34	Rnf216 (ENSMAUG00000009736) #35	Fscn1 (ENSMAUG00000021320) #36	Actb (ENSMAUG00000008763) #37	Fbxl18 (ENSMAUG00000012173)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1850	Bri3 (ENSNGAG00000013902) #7	Tecpr1 (ENSNGAG00000013589) #8	Bhlha15 (ENSNGAG00000011836) #9	Lmtk2 (ENSNGAG00000012019) #10	Ocm (ENSNGAG00000008617) #11	Ccz1 (ENSNGAG00000004053) #12	Rsph10b (ENSNGAG00000023731) #13	ENSNGAG00000010571 #14	Aimp2 (ENSNGAG00000019038) #15	Ankrd61 (ENSNGAG00000017533) #16	Eif2ak1 (ENSNGAG00000022444) #17	Usp42 (ENSNGAG00000007453) #18	Cyth3 (ENSNGAG00000019742) #19	ENSNGAG00000024023	ENSNGAG00000022224	Rac1 (ENSNGAG00000011813) #22	Daglb (ENSNGAG00000022378) #23	Kdelr2 (ENSNGAG00000023321) #24	Grid2ip (ENSNGAG00000023413) #25	Zdhhc4 (ENSNGAG00000001133) #26	Ints15 (ENSNGAG00000011823) #27	Zfp853 (ENSNGAG00000023160) #28	Zfp316 (ENSNGAG00000022662) #29	Zfp12 (ENSNGAG00000016497) #30
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	130	Nudt1 (ENSJJAG00000018201)	Snx8 (ENSJJAG00000019543)	Nptx2 (ENSJJAG00000011310)	Baiap2l1 (ENSJJAG00000010366)	Bri3 (ENSJJAG00000022483) #7	Tecpr1 (ENSJJAG00000013577) #8	Lmtk2 (ENSJJAG00000013256) #10	Ocm (ENSJJAG00000018779) #11	Ccz1 (ENSJJAG00000009367) #12	ENSJJAG00000019007 #14	Aimp2 (ENSJJAG00000023308) #15	Eif2ak1 (ENSJJAG00000007006) #17	Ankrd61 (ENSJJAG00000018483) #16	ENSJJAG00000016570 #18	Cyth3 (ENSJJAG00000018590) #19	ENSJJAG00000011580 #22	Daglb (ENSJJAG00000013208) #23	Kdelr2 (ENSJJAG00000009130) #24	Grid2ip (ENSJJAG00000023779) #25	Zdhhc4 (ENSJJAG00000004494) #26	Ints15 (ENSJJAG00000021512) #27	Zfp853 (ENSJJAG00000023526) #28	ENSJJAG00000013583 #29	Zfp12 (ENSJJAG00000002331) #30	ENSJJAG00000013312 #31	Rbak (ENSJJAG00000015404) #33
Lesser Egyptian jerboa	MODERN SPECIES	52	Pigk (ENSJJAG00000023897)	St6galnac5 (ENSJJAG00000017065)	St6galnac3 (ENSJJAG00000001065)	Asb17 (ENSJJAG00000004726)	Msh4 (ENSJJAG00000020666)	Rabggtb (ENSJJAG00000022754)	Acadm (ENSJJAG00000015548)	Slc44a5 (ENSJJAG00000003214)	Lhx8 (ENSJJAG00000018516)	ENSJJAG00000005103	Cryz (ENSJJAG00000000662)	ENSJJAG00000009791	Tnni3k (ENSJJAG00000021052)	ENSJJAG00000010776	ENSJJAG00000018649	ENSJJAG00000013506 #22	ENSJJAG00000010520	ENSJJAG00000017586	ENSJJAG00000018698	Hecw2 (ENSJJAG00000022806)	Gtf3c3 (ENSJJAG00000004649)	Pgap1 (ENSJJAG00000009924)	Ankrd44 (ENSJJAG00000016107)	ENSJJAG00000018305	Sf3b1 (ENSJJAG00000010903)	Coq10b (ENSJJAG00000020646)	ENSJJAG00000016713	ENSJJAG00000012025	ENSJJAG00000009865	Rftn2 (ENSJJAG00000002223)	Mars2 (ENSJJAG00000023940)
Kangaroo rat	MODERN SPECIES	387	ENSDORG00000027487	Tecpr1 (ENSDORG00000003936) #8	Bhlha15 (ENSDORG00000026874) #9	Lmtk2 (ENSDORG00000003934) #10	Ocm (ENSDORG00000012852) #11	Ccz1 (ENSDORG00000013281) #12	ENSDORG00000028983	Rsph10b (ENSDORG00000027674) #13	ENSDORG00000026010 #14	Aimp2 (ENSDORG00000029049) #15	Ankrd61 (ENSDORG00000016272) #16	Eif2ak1 (ENSDORG00000016271) #17	ENSDORG00000025319 #18	Cyth3 (ENSDORG00000024524) #19	ENSDORG00000028442	Rac1 (ENSDORG00000014388) #22	Daglb (ENSDORG00000002646) #23	Kdelr2 (ENSDORG00000012464) #24	Grid2ip (ENSDORG00000001187) #25	Zdhhc4 (ENSDORG00000025226) #26	Ints15 (ENSDORG00000015054) #27	ENSDORG00000023712	Zfp316 (ENSDORG00000023753) #29	Zfp12 (ENSDORG00000005742) #30	ENSDORG00000025580 #31	Rbak (ENSDORG00000023872) #33	Rnf216 (ENSDORG00000010835) #35	Fscn1 (ENSDORG00000025729) #36	Actb (ENSDORG00000010079) #37	Fbxl18 (ENSDORG00000010081)	Tnrc18 (ENSDORG00000029645)
Rodentia_A	ANCESTRAL SPECIES	10	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00840000130004 #16	ENSGT00940000157605 #17	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b #34	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36	ENSGT00950000182960.a.a.a.a.b.rb.i #37
Hystricomorpha	ANCESTRAL SPECIES	17	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825.h.a #19	ENSGT00390000014156 #20	ENSGT00940000155825.h.b #19	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00550000074913	ENSGT00940000163734	ENSGT00940000156614.b	ENSGT00940000162164	ENSGT00940000158717	ENSGT00950000183060.a.a	ENSGT00940000163679
Naked mole-rat female	MODERN SPECIES		ENSHGLG00000013637	ENSHGLG00000020676	ENSHGLG00000009254 #11	ENSHGLG00000007267 #12	ENSHGLG00000010064 #13	ENSHGLG00000038861	PMS2 (ENSHGLG00000007741) #14	AIMP2 (ENSHGLG00000041958) #15	ANKRD61 (ENSHGLG00000005518) #16	EIF2AK1 (ENSHGLG00000015194) #17	ENSHGLG00000035813	USP42 (ENSHGLG00000018062) #18	ENSHGLG00000017988 #19	ENSHGLG00000041754	ENSHGLG00000040110 #20	RAC1 (ENSHGLG00000009964) #22	DAGLB (ENSHGLG00000007996) #23	KDELR2 (ENSHGLG00000006270) #24	GRID2IP (ENSHGLG00000009097) #25	ZDHHC4 (ENSHGLG00000006221) #26	INTS15 (ENSHGLG00000012729) #27	ENSHGLG00000044919	ZNF853 (ENSHGLG00000043485) #28	ZNF316 (ENSHGLG00000006683) #29	ENSHGLG00000049211	ENSHGLG00000014390 #30	ENSHGLG00000015253	ENSHGLG00000048380	ENSHGLG00000015038	ENSHGLG00000015019	ENSHGLG00000038095
Hystricomorpha_a	ANCESTRAL SPECIES	16	ENSGT00940000153560.b.b.a	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825.h.a #19	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00550000074913	ENSGT00940000163734	ENSGT00940000156614.b	ENSGT00940000162164	ENSGT00940000158717	ENSGT00950000183060.a.a	ENSGT00940000163679
Guinea pig	MODERN SPECIES	30	BRI3 (ENSCPOG00000025281) #7	TECPR1 (ENSCPOG00000010430) #8	BHLHA15 (ENSCPOG00000033368) #9	LMTK2 (ENSCPOG00000009408) #10	ENSCPOG00000031560	ENSCPOG00000011911 #11	ENSCPOG00000014787 #12	ENSCPOG00000019836 #13	PMS2 (ENSCPOG00000000555) #14	AIMP2 (ENSCPOG00000014855) #15	EIF2AK1 (ENSCPOG00000014860) #17	ANKRD61 (ENSCPOG00000014869) #16	ENSCPOG00000013717 #18	CYTH3 (ENSCPOG00000010827) #19	ENSCPOG00000031545	RAC1 (ENSCPOG00000008590) #22	DAGLB (ENSCPOG00000008596) #23	KDELR2 (ENSCPOG00000036190) #24	GRID2IP (ENSCPOG00000026013) #25	ZDHHC4 (ENSCPOG00000005689) #26	INTS15 (ENSCPOG00000002390) #27	ZNF853 (ENSCPOG00000035682) #28	ZNF316 (ENSCPOG00000008777) #29	ZNF12 (ENSCPOG00000038275) #30	ENSCPOG00000034927 #18	ENSCPOG00000019496	ENSCPOG00000000197	GRIFIN (ENSCPOG00000027408)	ENSCPOG00000024469	ENSCPOG00000010266	ENSCPOG00000031410
Hystricomorpha_b	ANCESTRAL SPECIES	55	ENSGT00940000153560.b.b.a	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00840000130004 #16	ENSGT00940000157605 #17	ENSGT00940000154596.b #18	ENSGT00940000155825.h.b #19	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00550000074913	ENSGT00940000163734	ENSGT00940000156614.b	ENSGT00940000162164	ENSGT00940000158717	ENSGT00950000183060.a.a	ENSGT00940000163679
Long-tailed chinchilla	MODERN SPECIES	167	TECPR1 (ENSCLAG00000006941) #8	BHLHA15 (ENSCLAG00000006581) #9	LMTK2 (ENSCLAG00000005806) #10	ENSCLAG00000007617 #11	ENSCLAG00000006812 #12	ENSCLAG00000004477 #13	ENSCLAG00000009853 #14	AIMP2 (ENSCLAG00000009734) #15	ANKRD61 (ENSCLAG00000008441) #16	EIF2AK1 (ENSCLAG00000007600) #17	ENSCLAG00000006764	USP42 (ENSCLAG00000004585) #18	ENSCLAG00000007268 #19	ENSCLAG00000007013 #19	ENSCLAG00000006763	RAC1 (ENSCLAG00000009375) #22	ENSCLAG00000014915	DAGLB (ENSCLAG00000010405) #23	KDELR2 (ENSCLAG00000008164) #24	GRID2IP (ENSCLAG00000004690) #25	ZDHHC4 (ENSCLAG00000005882) #26	INTS15 (ENSCLAG00000005799) #27	ZNF853 (ENSCLAG00000005585) #28	ZNF316 (ENSCLAG00000004965) #29	ZNF12 (ENSCLAG00000007714) #30	EIF3B (ENSCLAG00000006140)	ENSCLAG00000005193	CHST12 (ENSCLAG00000005658)	GRIFIN (ENSCLAG00000005569)	LFNG (ENSCLAG00000005347)	TTYH3 (ENSCLAG00000010104)
Degu	DUPLICATION
Degu	DUPLICATION
Degu	MODERN SPECIES	91	PRKCSH (ENSODEG00000015657)	ELAVL3 (ENSODEG00000015790)	ZNF653 (ENSODEG00000015477)	ECSIT (ENSODEG00000016279)	CNN1 (ENSODEG00000016009)	ENSODEG00000015688	ACP5 (ENSODEG00000015797)	ENSODEG00000020329	ENSODEG00000015977	ENSODEG00000020296	VAV1 (ENSODEG00000015478)	TRIP10 (ENSODEG00000015929)	GPR108 (ENSODEG00000016288)	C3 (ENSODEG00000015506)	TNFSF14 (ENSODEG00000015436)	ENSODEG00000020289 #22	ENSODEG00000015175	TUBB4A (ENSODEG00000015772)	ENSODEG00000015746	CRB3 (ENSODEG00000015295)	SLC25A23 (ENSODEG00000014916)	SLC25A41 (ENSODEG00000015990)	KHSRP (ENSODEG00000015021)	ENSODEG00000015969	GTF2F1 (ENSODEG00000014900)	PSPN (ENSODEG00000014761)	ALKBH7 (ENSODEG00000015141)	CLPP (ENSODEG00000015485)	ACER1 (ENSODEG00000015726)	MLLT1 (ENSODEG00000014883)	ENSODEG00000015920
Degu	MODERN SPECIES	93	IL1F10 (ENSODEG00000005739)	IL36RN (ENSODEG00000006210)	ENSODEG00000007018	IL36A (ENSODEG00000005630)	ENSODEG00000019269	IL1B (ENSODEG00000006687)	CKAP2L (ENSODEG00000005587)	SLC20A1 (ENSODEG00000006024)	CHCHD5 (ENSODEG00000005670)	POLR1B (ENSODEG00000005501)	TTL (ENSODEG00000007061)	ENSODEG00000007009	ZC3H6 (ENSODEG00000009099)	ENSODEG00000005806	ZC3H8 (ENSODEG00000006594)	ENSODEG00000006298 #22	FBLN7 (ENSODEG00000008566)	TMEM87B (ENSODEG00000006134)	MERTK (ENSODEG00000005950)	BCL2L11 (ENSODEG00000006911)	BUB1 (ENSODEG00000006522)	ENSODEG00000006360	ENSODEG00000005851	ENSODEG00000006127	MALL (ENSODEG00000006386)	MAL (ENSODEG00000006405)	MRPS5 (ENSODEG00000006937)	ZNF2 (ENSODEG00000005837)	PROM2 (ENSODEG00000006749)	KCNIP3 (ENSODEG00000007993)	FAHD2A (ENSODEG00000006155)
Degu	MODERN SPECIES	72	BAIAP2L1 (ENSODEG00000010504)	BRI3 (ENSODEG00000010514) #7	TECPR1 (ENSODEG00000011578) #8	LMTK2 (ENSODEG00000012233) #10	ENSODEG00000011077 #11	ENSODEG00000011251 #12	ENSODEG00000012084 #14	ENSODEG00000011718 #15	EIF2AK1 (ENSODEG00000011509) #17	ENSODEG00000019832	ENSODEG00000012213 #18	ENSODEG00000012217	CYTH3 (ENSODEG00000011710) #19	ENSODEG00000010243	ENSODEG00000010724	ENSODEG00000010508 #22	DAGLB (ENSODEG00000010099) #23	KDELR2 (ENSODEG00000009858) #24	GRID2IP (ENSODEG00000010098) #25	INTS15 (ENSODEG00000010510) #27	ZNF316 (ENSODEG00000011271) #29	ENSODEG00000010214 #30	ENSODEG00000010666 #30	EIF3B (ENSODEG00000012851)	CHST12 (ENSODEG00000019997)	GRIFIN (ENSODEG00000012470)	LFNG (ENSODEG00000009962)	TTYH3 (ENSODEG00000009504)	ENSODEG00000012047	GNA12 (ENSODEG00000011099)	CARD11 (ENSODEG00000009936)
Sciuridae	ANCESTRAL SPECIES	9	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00840000130004 #16	ENSGT00940000157605 #17	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23
Marmotini	ANCESTRAL SPECIES	85	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00940000154173.A.i.a.b #31
Alpin marmot	MODERN SPECIES	77	TECPR1 (ENSMMMG00000006293) #8	BHLHA15 (ENSMMMG00000006320) #9	LMTK2 (ENSMMMG00000006321) #10	ENSMMMG00000006340 #11	ENSMMMG00000006346 #12	ENSMMMG00000006369 #13	ENSMMMG00000006406 #14	AIMP2 (ENSMMMG00000006437) #15	EIF2AK1 (ENSMMMG00000006468) #17	ANKRD61 (ENSMMMG00000006880) #16	USP42 (ENSMMMG00000006895) #18	CYTH3 (ENSMMMG00000006920) #19	FAM220A (ENSMMMG00000006949) #20	ENSMMMG00000006952	ENSMMMG00000006962	RAC1 (ENSMMMG00000006966) #22	DAGLB (ENSMMMG00000006987) #23	ENSMMMG00000007019 #31	GNA12 (ENSMMMG00000007029)	CARD11 (ENSMMMG00000007041)	SDK1 (ENSMMMG00000007072)	FOXK1 (ENSMMMG00000007197)	AP5Z1 (ENSMMMG00000007212)	RADIL (ENSMMMG00000007258)	PAPOLB (ENSMMMG00000007296)	MMD2 (ENSMMMG00000007303)	WIPI2 (ENSMMMG00000007313)	SLC29A4 (ENSMMMG00000007333)	TNRC18 (ENSMMMG00000007352)	FBXL18 (ENSMMMG00000007533)	ACTB (ENSMMMG00000007553) #37
Marmotini_b	ANCESTRAL SPECIES	131	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826.w #15	ENSGT00840000130004 #16	ENSGT00940000157605 #17	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00940000154173.A.i.a.b #31
Squirrel	MODERN SPECIES	350	TECPR1 (ENSSTOG00000009733) #8	BHLHA15 (ENSSTOG00000009728) #9	LMTK2 (ENSSTOG00000009706) #10	ENSSTOG00000010731 #11	ENSSTOG00000006071 #12	ENSSTOG00000026631 #13	ENSSTOG00000006111 #14	ENSSTOG00000029156 #15	ANKRD61 (ENSSTOG00000009292) #16	EIF2AK1 (ENSSTOG00000009274) #17	USP42 (ENSSTOG00000001211) #18	CYTH3 (ENSSTOG00000014555) #19	ENSSTOG00000033124	FAM220A (ENSSTOG00000033953) #20	ENSSTOG00000028517	RAC1 (ENSSTOG00000006784) #22	DAGLB (ENSSTOG00000006792) #23
Arctic ground squirrel	MODERN SPECIES	300	TECPR1 (ENSUPAG00010006865) #8	BHLHA15 (ENSUPAG00010006858) #9	LMTK2 (ENSUPAG00010006825) #10	ENSUPAG00010006809 #11	ENSUPAG00010006347 #12	ENSUPAG00010006316 #13	PMS2 (ENSUPAG00010006292) #14	ENSUPAG00010006282 #15	ANKRD61 (ENSUPAG00010006253) #16	EIF2AK1 (ENSUPAG00010006214) #17	USP42 (ENSUPAG00010006190) #18	CYTH3 (ENSUPAG00010006163) #19	FAM220A (ENSUPAG00010006158) #20	ENSUPAG00010006155	ENSUPAG00010006147	RAC1 (ENSUPAG00010006103) #22	DAGLB (ENSUPAG00010006087) #23	ENSUPAG00010006076 #31
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	9	ENSSVLG00005020936	TECPR1 (ENSSVLG00005020896) #8	BHLHA15 (ENSSVLG00005020870) #9	LMTK2 (ENSSVLG00005020820) #10	ENSSVLG00005020777 #11	ENSSVLG00005020724 #12	ENSSVLG00005020563 #13	PMS2 (ENSSVLG00005020367) #14	ENSSVLG00005020254 #15	ANKRD61 (ENSSVLG00005020185) #16	EIF2AK1 (ENSSVLG00005020146) #17	ENSSVLG00005020095 #18	CYTH3 (ENSSVLG00005020027) #19	ENSSVLG00005020002 #20	ENSSVLG00005019953	ENSSVLG00005019810 #22	DAGLB (ENSSVLG00005019691) #23	GNA12 (ENSSVLG00005019630)	CARD11 (ENSSVLG00005019511)	SDK1 (ENSSVLG00005018436)	FOXK1 (ENSSVLG00005018254)	AP5Z1 (ENSSVLG00005018224)	ENSSVLG00005018177	RADIL (ENSSVLG00005017983)	MMD2 (ENSSVLG00005017856)	WIPI2 (ENSSVLG00005017246)	SLC29A4 (ENSSVLG00005024899)	TNRC18 (ENSSVLG00005024777)	FBXL18 (ENSSVLG00005024737)	ACTB (ENSSVLG00005024720) #37	FSCN1 (ENSSVLG00005024706) #36
Eurasian red squirrel	MODERN SPECIES	5	IL1F10 (ENSSVLG00005005916)	IL36RN (ENSSVLG00005005954)	ENSSVLG00005005994	IL36A (ENSSVLG00005006035)	IL36G (ENSSVLG00005006084)	IL37 (ENSSVLG00005006202)	IL1B (ENSSVLG00005006237)	ENSSVLG00005006289	ENSSVLG00005006322	CKAP2L (ENSSVLG00005006391)	SLC20A1 (ENSSVLG00005006537)	CHCHD5 (ENSSVLG00005006621)	POLR1B (ENSSVLG00005006694)	TTL (ENSSVLG00005006833)	ZC3H6 (ENSSVLG00005006888)	ENSSVLG00005006980 #22	ZC3H8 (ENSSVLG00005007026)	FBLN7 (ENSSVLG00005007087)	TMEM87B (ENSSVLG00005007136)	MERTK (ENSSVLG00005007198)	ANAPC1 (ENSSVLG00005007374)	ENSSVLG00005007423	BCL2L11 (ENSSVLG00005007468)	ACOXL (ENSSVLG00005007535)	ENSSVLG00005007625	ENSSVLG00005007649	BUB1 (ENSSVLG00005007806)	ENSSVLG00005008298	MTLN (ENSSVLG00005008567)	ENSSVLG00005008584	MALL (ENSSVLG00005008602)
Lagomorpha	ANCESTRAL SPECIES	173														ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00950000183157.a.a.b #36	ENSGT00510000048032 #35	ENSGT00950000182960.a.a.a.b ##37	ENSGT00390000015109	ENSGT00940000157099
Rabbit	MODERN SPECIES	664														ENSOCUG00000025340	ENSOCUG00000034063	RAC1 (ENSOCUG00000009956) #22	DAGLB (ENSOCUG00000009961) #23	KDELR2 (ENSOCUG00000003101) #24	GRID2IP (ENSOCUG00000024847) #25	ZDHHC4 (ENSOCUG00000027942) #26	INTS15 (ENSOCUG00000002442) #27
Pika	MODERN SPECIES	1397																RAC1 (ENSOPRG00000005077) #22	ENSOPRG00000005088 #23
Tree shrew	MODERN SPECIES	1678																RAC1 (ENSTBEG00000017336) #22	DAGLB (ENSTBEG00000017430) #23	KDELR2 (ENSTBEG00000009844) #24
Primates	ANCESTRAL SPECIES	11	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000170143	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b #34	ENSGT00510000048032 #35	ENSGT00910000147936
Haplorrhini	ANCESTRAL SPECIES	26	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000170143	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT00510000048032 #35	ENSGT00910000147936	ENSGT00950000183157.a.a.b #36
Simiiformes	DUPLICATION
Simiiformes	DUPLICATION
Simiiformes	DUPLICATION
Simiiformes	ANCESTRAL SPECIES	26	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000170143	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A.a #31	ENSGT00940000154303.A.b #33	ENSGT00510000048032 #35	ENSGT00910000147936	ENSGT00950000183157.a.a.b #36
Catarrhini	ANCESTRAL SPECIES	6	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713.c #12	ENSGT00940000170143	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.b #22	ENSGT00390000014156.c #20	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A.a.d #31
Hominoidea	ANCESTRAL SPECIES	6	ENSGT00950000182960.a.a.a.a.b.rb.x #37	ENSGT00940000154172.gb.a	ENSGT00950000183157.a.a.b #36	ENSGT00510000048032 #35	ENSGT00390000004713.c #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.b #22	ENSGT00390000014156.c #20	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00390000004713.d #12	ENSGT00940000161875 #11	ENSGT00940000158475 #10	ENSGT00940000161824 #9	ENSGT00510000047886.a #8	ENSGT00510000048486 #7
Hominidae	ANCESTRAL SPECIES	26	ENSGT00950000182960.a.a.a.a.b.rb.x #37	ENSGT00940000154172.gb.a	ENSGT00950000183157.a.a.b #36	ENSGT00510000048032 #35	ENSGT00390000004713.c #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.b #22	ENSGT00390000014156.c #20	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A.a.c.a #31	ENSGT00940000154303.C.g.b ##30	ENSGT00940000153253.b.a.g	ENSGT00940000155974.i.a	ENSGT00390000004713.d #12	ENSGT00940000161875 #11
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	31								ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156.c #20	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.b #22	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A.a.c.a.a #31	ENSGT00940000155381.s #14	ENSGT00940000159899 #13	ENSGT00390000004713.c #12	ENSGT00940000161875.c.a #11	ENSGT00510000048032 #35
Gorilla	MODERN SPECIES	20	FBXL18 (ENSGGOG00000014037)	ACTB (ENSGGOG00000001133) #37	ENSGGOG00000025778	FSCN1 (ENSGGOG00000025593) #36	RNF216 (ENSGGOG00000042353) #35	ENSGGOG00000009068 #11	ENSGGOG00000027454 #12	ENSGGOG00000038387 #13	PMS2 (ENSGGOG00000007960) #14	AIMP2 (ENSGGOG00000007974) #15	EIF2AK1 (ENSGGOG00000016216) #17	ANKRD61 (ENSGGOG00000016229) #16	USP42 (ENSGGOG00000015369) #18	CYTH3 (ENSGGOG00000015376) #19	FAM220A (ENSGGOG00000003262) #20	RAC1 (ENSGGOG00000026733) #22	DAGLB (ENSGGOG00000003364) #23	KDELR2 (ENSGGOG00000042815) #24	GRID2IP (ENSGGOG00000008503) #25	INTS15 (ENSGGOG00000026416) #27	ZNF853 (ENSGGOG00000042292) #28	ZNF316 (ENSGGOG00000040823) #29	ZNF12 (ENSGGOG00000037007) #30	ENSGGOG00000036794 #14	ENSGGOG00000043211 #13	ENSGGOG00000002464 #12	ENSGGOG00000036515	ENSGGOG00000037468	C1GALT1 (ENSGGOG00000036533)	COL28A1 (ENSGGOG00000010238)	MIOS (ENSGGOG00000000652)
Homo/Pan group	ANCESTRAL SPECIES	30								ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156.c #20	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.b #22	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A.a.c.a.a #31	ENSGT00940000155381.s #14	ENSGT00940000159899 #13	ENSGT00390000004713.c #12	ENSGT00940000161875.c.a #11	ENSGT00510000048032 #35
Pan	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.k.a.a #22
Bonobo	MODERN SPECIES	19	GJE1 (ENSPPAG00000044075)	VTA1 (ENSPPAG00000028015)	ADGRG6 (ENSPPAG00000029546)	HIVEP2 (ENSPPAG00000043727)	AIG1 (ENSPPAG00000028952)	ADAT2 (ENSPPAG00000033931)	PEX3 (ENSPPAG00000028165)	FUCA2 (ENSPPAG00000037381)	ENSPPAG00000041752	PHACTR2 (ENSPPAG00000040531)	LTV1 (ENSPPAG00000015213)	ENSPPAG00000039717	ZC2HC1B (ENSPPAG00000035140)	PLAGL1 (ENSPPAG00000039736)	SF3B5 (ENSPPAG00000012940)	ENSPPAG00000033447 #22	STX11 (ENSPPAG00000001921)	ENSPPAG00000028739	UTRN (ENSPPAG00000001385)	ENSPPAG00000038106	ENSPPAG00000040864	FBXO30 (ENSPPAG00000041370)	SHPRH (ENSPPAG00000031038)	GRM1 (ENSPPAG00000042992)	RAB32 (ENSPPAG00000028297)	ADGB (ENSPPAG00000031064)	ENSPPAG00000028369	STXBP5 (ENSPPAG00000033851)	SASH1 (ENSPPAG00000029791)	UST (ENSPPAG00000027785)	ENSPPAG00000028432
Chimpanzee	MODERN SPECIES	622						ENSPTRG00000048223 #29	ENSPTRG00000049654 #30	ENSPTRG00000048669 #14	ENSPTRG00000047958 #15	ENSPTRG00000045071 #16	ENSPTRG00000049217 #17	ENSPTRG00000049666 #18	ENSPTRG00000043290 #19	FAM220A (ENSPTRG00000043522) #20	ENSPTRG00000050467	RAC1 (ENSPTRG00000052694) #22	ENSPTRG00000043602 #23	KDELR2 (ENSPTRG00000047111) #24	GRID2IP (ENSPTRG00000033718) #25	ZDHHC4 (ENSPTRG00000018915) #26	ENSPTRG00000052574	INTS15 (ENSPTRG00000018917) #27	ZNF853 (ENSPTRG00000043650) #28
Human	MODERN SPECIES	19	FBXL18 (ENSG00000155034)	ACTB (ENSG00000075624) #37	FSCN1 (ENSG00000075618) #36	RNF216 (ENSG00000011275) #35	OCM (ENSG00000122543) #11	CCZ1 (ENSG00000122674) #12	RSPH10B (ENSG00000155026) #13	PMS2 (ENSG00000122512) #14	AIMP2 (ENSG00000106305) #15	EIF2AK1 (ENSG00000086232) #17	ANKRD61 (ENSG00000157999) #16	USP42 (ENSG00000106346) #18	CYTH3 (ENSG00000008256) #19	FAM220A (ENSG00000178397) #20	SAGSIN1 (ENSG00000286075)	RAC1 (ENSG00000136238) #22	DAGLB (ENSG00000164535) #23	KDELR2 (ENSG00000136240) #24	GRID2IP (ENSG00000215045) #25	ZDHHC4 (ENSG00000136247) #26	INTS15 (ENSG00000146576) #27	ZNF853 (ENSG00000236609) #28	ZNF316 (ENSG00000205903) #29	ZNF12 (ENSG00000164631) #30	RSPH10B2 (ENSG00000169402) #13	CCZ1B (ENSG00000146574) #12	C1GALT1 (ENSG00000106392)	COL28A1 (ENSG00000215018)	MIOS (ENSG00000164654)	RPA3 (ENSG00000106399)	UMAD1 (ENSG00000219545)
Orangutan	MODERN SPECIES	20						ENSPPYG00000017359 #12	ENSPPYG00000017358 #13	PMS2 (ENSPPYG00000017341) #14	AIMP2 (ENSPPYG00000031737) #15	EIF2AK1 (ENSPPYG00000017343) #17	ANKRD61 (ENSPPYG00000017344) #16	USP42 (ENSPPYG00000017345) #18	CYTH3 (ENSPPYG00000017346) #19	FAM220A (ENSPPYG00000017347) #20	ENSPPYG00000036565	RAC1 (ENSPPYG00000017348) #22	DAGLB (ENSPPYG00000017349) #23	KDELR2 (ENSPPYG00000017350) #24	GRID2IP (ENSPPYG00000017351) #25	ZDHHC4 (ENSPPYG00000017352) #26	INTS15 (ENSPPYG00000017353) #27	ZNF853 (ENSPPYG00000040545) #28	ZNF316 (ENSPPYG00000033506) #29	ZNF12 (ENSPPYG00000030303) #30	ENSPPYG00000017340 #11	LMTK2 (ENSPPYG00000017360) #10	BHLHA15 (ENSPPYG00000017361) #9	TECPR1 (ENSPPYG00000017362) #8	ENSPPYG00000037940 #7	BAIAP2L1 (ENSPPYG00000017363)	NPTX2 (ENSPPYG00000029795)
Cercopithecidae	ANCESTRAL SPECIES	11	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713.c #12	ENSGT00940000170143	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156.c #20	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A.a.d #31
Cercopithecinae	ANCESTRAL SPECIES	8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713.c.h #12	ENSGT00940000170143	ENSGT00390000004713.c.g #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156.c #20	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A.a.d #31
Cercopithecinae_a	ANCESTRAL SPECIES	8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713.c.h #12	ENSGT00940000170143	ENSGT00390000004713.c.g #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156.c #20	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A.a.c.a #31
Macaca	ANCESTRAL SPECIES	3	ENSGT00940000153560.b.b.a	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713.c.g #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00840000130004 #16	ENSGT00940000157605 #17	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A.a.c.a #31	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36	ENSGT00950000182960.a.a.a.a.b.rb.v #37	ENSGT00390000015109	ENSGT00910000147820
Pig-tailed macaque	MODERN SPECIES	80	NPTX2 (ENSMNEG00000031035)	BAIAP2L1 (ENSMNEG00000027564)	BRI3 (ENSMNEG00000000029) #7	TECPR1 (ENSMNEG00000039715) #8	BHLHA15 (ENSMNEG00000021350) #9	LMTK2 (ENSMNEG00000038154) #10	ENSMNEG00000036828 #11	ENSMNEG00000031130 #12	ENSMNEG00000034328 #13	PMS2 (ENSMNEG00000039965) #14	AIMP2 (ENSMNEG00000030339) #15	EIF2AK1 (ENSMNEG00000033109) #17	USP42 (ENSMNEG00000038408) #18	CYTH3 (ENSMNEG00000031782) #19	ENSMNEG00000041902	RAC1 (ENSMNEG00000039059) #22	DAGLB (ENSMNEG00000042196) #23	KDELR2 (ENSMNEG00000045050) #24	GRID2IP (ENSMNEG00000036441) #25	ZDHHC4 (ENSMNEG00000021133) #26	ENSMNEG00000045316	INTS15 (ENSMNEG00000024848) #27	ZNF853 (ENSMNEG00000044091) #28	ZNF316 (ENSMNEG00000038628) #29	ZNF12 (ENSMNEG00000031305) #30
Macaca_a	ANCESTRAL SPECIES	22	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.a.a.b.rb.v #37	ENSGT00950000183157.a.a.b #36	ENSGT00510000048032 #35	ENSGT00940000161875 #11	ENSGT00390000004713.c.g #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00840000130004 #16	ENSGT00940000157605 #17	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156.c #20	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000183030.m.a.a.b.a.a.a.a	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT01100000263493.a.b.a.b.b.b.a.a.a.a.b.b.b	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A.a.c.a #31
Crab-eating macaque	MODERN SPECIES	13	ENSMFAG00000036994	ENSMFAG00000049779	ENSMFAG00000059369	ENSMFAG00000047484 #11	ENSMFAG00000035825 #12	ENSMFAG00000030711 #13	PMS2 (ENSMFAG00000046359) #14	AIMP2 (ENSMFAG00000045123) #15	ANKRD61 (ENSMFAG00000045423) #16	EIF2AK1 (ENSMFAG00000036418) #17	ENSMFAG00000049363 #18	ENSMFAG00000065514	ENSMFAG00000051285	ENSMFAG00000053446	FAM220A (ENSMFAG00000039457) #20	RAC1 (ENSMFAG00000045457) #22	DAGLB (ENSMFAG00000040592) #23	KDELR2 (ENSMFAG00000038055) #24	ENSMFAG00000054370	ZDHHC4 (ENSMFAG00000002456) #26	INTS15 (ENSMFAG00000037040) #27	ENSMFAG00000054749	ENSMFAG00000065370	ENSMFAG00000048399	ZNF12 (ENSMFAG00000006390) #30	ENSMFAG00000042064 #31	ENSMFAG00000061747	ENSMFAG00000057400	ENSMFAG00000062555 #12	ENSMFAG00000003003 #12	ENSMFAG00000036278 #11
Cercopithecinae_b	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.k.a.a #22
Olive baboon	MODERN SPECIES	14	AIMP2 (ENSPANG00000010693) #15	EIF2AK1 (ENSPANG00000004605) #17	ANKRD61 (ENSPANG00000009970) #16	USP42 (ENSPANG00000000532) #18	CYTH3 (ENSPANG00000015584) #19	MMD2 (ENSPANG00000015670)	RNF216 (ENSPANG00000007249) #35	RBAK (ENSPANG00000015671) #33	FSCN1 (ENSPANG00000009103) #36	ACTB (ENSPANG00000015700) #37	TNRC18 (ENSPANG00000018936)	SLC29A4 (ENSPANG00000000676)	ENSPANG00000017642	FAM220A (ENSPANG00000046944) #20	ENSPANG00000033641	RAC1 (ENSPANG00000010758) #22	DAGLB (ENSPANG00000016791) #23	KDELR2 (ENSPANG00000018696) #24	GRID2IP (ENSPANG00000018761) #25	ZDHHC4 (ENSPANG00000015737) #26	INTS15 (ENSPANG00000022201) #27	ZNF853 (ENSPANG00000015668) #28	ZNF316 (ENSPANG00000009015) #29	ZNF12 (ENSPANG00000021731) #30	ENSPANG00000024105 #31	RADIL (ENSPANG00000019579)	AP5Z1 (ENSPANG00000000258)	FOXK1 (ENSPANG00000037960)	SDK1 (ENSPANG00000025137)	ENSPANG00000037200	ENSPANG00000045197
Vervet Monkey	MODERN SPECIES	20	TRRAP (ENSCSAG00000017767)	TMEM130 (ENSCSAG00000017759)	NPTX2 (ENSCSAG00000017758)	BAIAP2L1 (ENSCSAG00000017756)	BRI3 (ENSCSAG00000017754) #7	TECPR1 (ENSCSAG00000017751) #8	BHLHA15 (ENSCSAG00000019492) #9	LMTK2 (ENSCSAG00000017746) #10	PMS2 (ENSCSAG00000017741) #14	AIMP2 (ENSCSAG00000017739) #15	EIF2AK1 (ENSCSAG00000017735) #17	ANKRD61 (ENSCSAG00000017721) #16	USP42 (ENSCSAG00000017719) #18	CYTH3 (ENSCSAG00000017714) #19	FAM220A (ENSCSAG00000019493) #20	RAC1 (ENSCSAG00000017712) #22	DAGLB (ENSCSAG00000017706) #23	KDELR2 (ENSCSAG00000017700) #24	GRID2IP (ENSCSAG00000017697) #25	ZDHHC4 (ENSCSAG00000017695) #26	INTS15 (ENSCSAG00000017692) #27	ZNF853 (ENSCSAG00000017691) #28	ZNF316 (ENSCSAG00000017690) #29	ENSCSAG00000017688	ZNF12 (ENSCSAG00000017682) #30	ENSCSAG00000017677 #31	RNF216 (ENSCSAG00000017676) #35	FSCN1 (ENSCSAG00000017673) #36	ENSCSAG00000019494	ENSCSAG00000017672 #37	ENSCSAG00000017671 #37
Rhinopithecus	ANCESTRAL SPECIES	275						ENSGT00390000004713.c #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.b #22	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30
Golden snub-nosed monkey	MODERN SPECIES	1348							ENSRROG00000039177 #12	ENSRROG00000044720 #13	PMS2 (ENSRROG00000034721) #14	AIMP2 (ENSRROG00000043430) #15	EIF2AK1 (ENSRROG00000024873) #17	ANKRD61 (ENSRROG00000031882) #16	USP42 (ENSRROG00000034058) #18	CYTH3 (ENSRROG00000040226) #19	ENSRROG00000031019	RAC1 (ENSRROG00000044094) #22	DAGLB (ENSRROG00000038174) #23	KDELR2 (ENSRROG00000029484) #24	GRID2IP (ENSRROG00000044597) #25	ZDHHC4 (ENSRROG00000007311) #26	ENSRROG00000035370	INTS15 (ENSRROG00000039312) #27	ZNF853 (ENSRROG00000028937) #28	ZNF316 (ENSRROG00000031845) #29	ZNF12 (ENSRROG00000000980) #30
Platyrrhini	ANCESTRAL SPECIES	19	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.d	ENSGT00390000015826 #15	ENSGT00940000157605.c #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A.a.a #31	ENSGT00940000154303.A.b #33	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36	ENSGT00950000182960.a.a.a.a.b.rb #37	ENSGT00390000015109	ENSGT00940000157099
Cebidae	ANCESTRAL SPECIES	24	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.d	ENSGT00390000015826 #15	ENSGT00940000157605.c #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A.a.a #31	ENSGT00940000154303.A.b #33	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36	ENSGT00950000182960.a.a.a.a.b.rb #37	ENSGT00390000015109	ENSGT00940000157099
Marmoset	MODERN SPECIES	11	BAIAP2L1 (ENSCJAG00000031937)	BRI3 (ENSCJAG00000071589) #7	TECPR1 (ENSCJAG00000033050) #8	BHLHA15 (ENSCJAG00000023085) #9	LMTK2 (ENSCJAG00000015240) #10	ENSCJAG00000015258 #11	ENSCJAG00000015269 #12	ENSCJAG00000015308 #13	PMS2 (ENSCJAG00000015340) #14	AIMP2 (ENSCJAG00000015370) #15	EIF2AK1 (ENSCJAG00000015372) #17	ANKRD61 (ENSCJAG00000015402) #16	USP42 (ENSCJAG00000015403) #18	CYTH3 (ENSCJAG00000046741) #19	ENSCJAG00000084892	RAC1 (ENSCJAG00000015455) #22	DAGLB (ENSCJAG00000015461) #23	KDELR2 (ENSCJAG00000015474) #24	GRID2IP (ENSCJAG00000015493) #25	ZDHHC4 (ENSCJAG00000015517) #26	INTS15 (ENSCJAG00000015531) #27	ZNF316 (ENSCJAG00000046914) #29	ZNF12 (ENSCJAG00000015557) #30	RBAK (ENSCJAG00000021500) #33	ENSCJAG00000087020 #35	RNF216 (ENSCJAG00000000082) #35	FSCN1 (ENSCJAG00000009271) #36	ENSCJAG00000074750 #37	FBXL18 (ENSCJAG00000000010)	TNRC18 (ENSCJAG00000000014)	SLC29A4 (ENSCJAG00000000017)
Cebidae_a	ANCESTRAL SPECIES	19	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.d	ENSGT00390000015826 #15	ENSGT00940000157605.c #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.b.b #22	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A.a.a #31	ENSGT00940000154303.A.b #33	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36	ENSGT00950000182960.a.a.a.a.b.rb.o #37	ENSGT00390000015109	ENSGT00940000157099
Capuchin	MODERN SPECIES	82	ENSCCAG00000027694 #11	ENSCCAG00000008446 #12	ENSCCAG00000000590	ENSCCAG00000023211 #13	PMS2 (ENSCCAG00000034137) #14	AIMP2 (ENSCCAG00000029971) #15	EIF2AK1 (ENSCCAG00000038031) #17	ANKRD61 (ENSCCAG00000016823) #16	ENSCCAG00000024128	USP42 (ENSCCAG00000033459) #18	ENSCCAG00000033290	CYTH3 (ENSCCAG00000023188) #19	ENSCCAG00000023146	ENSCCAG00000030315	ENSCCAG00000002321	RAC1 (ENSCCAG00000018116) #22	DAGLB (ENSCCAG00000026009) #23	KDELR2 (ENSCCAG00000037966) #24	GRID2IP (ENSCCAG00000037972) #25	ZDHHC4 (ENSCCAG00000037975) #26	C7orf26 (ENSCCAG00000015301) #27	ZNF853 (ENSCCAG00000037168) #28	ZNF316 (ENSCCAG00000024464) #29	ZNF12 (ENSCCAG00000012689) #30	ENSCCAG00000020987 #31	ENSCCAG00000033746 #31	RBAK (ENSCCAG00000021483) #33	ENSCCAG00000036334 #31	RNF216 (ENSCCAG00000022796) #35	FSCN1 (ENSCCAG00000035212) #36	ACTB (ENSCCAG00000037169) #37
Mas night monkey	MODERN SPECIES	343	MPHOSPH8 (ENSANAG00000020044)	ENSANAG00000020843	ENSANAG00000010505	PARP4 (ENSANAG00000021254)	ENSANAG00000031834	MICU2 (ENSANAG00000021752)	FGF9 (ENSANAG00000017308)	ENSANAG00000033332	ENSANAG00000033204	ENSANAG00000031654	ENSANAG00000022011	ENSANAG00000020073	ENSANAG00000015017	ENSANAG00000033775	ENSANAG00000031755	ENSANAG00000025862 #22	GPR12 (ENSANAG00000019460)	ENSANAG00000019364	WASF3 (ENSANAG00000032101)	CDK8 (ENSANAG00000019361)	RNF6 (ENSANAG00000029061)	SHISA2 (ENSANAG00000035019)	ENSANAG00000032345 #37	ATP8A2 (ENSANAG00000031539)	ENSANAG00000031404	ZDHHC20 (ENSANAG00000029922)	ENSANAG00000034653	ENSANAG00000031766	SGCG (ENSANAG00000035637)	SACS (ENSANAG00000035314)	ENSANAG00000022043
Simiiformes	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.k.a.b #22
Catarrhini	ANCESTRAL SPECIES	12	ENSGT00940000160971	ENSGT00940000163956.c	ENSGT00940000165112	ENSGT00940000164535.a	ENSGT00940000164535.b	ENSGT00940000164981	ENSGT00940000162721	ENSGT00940000162359	ENSGT00390000002886.b.b	ENSGT00390000004226	ENSGT00940000158878	ENSGT00940000156974	ENSGT00940000159516	ENSGT00940000163347	ENSGT00940000160788	ENSGT00940000153500.a.a.k.a.b #22	ENSGT00940000162539	ENSGT00940000163390	ENSGT00940000153425.b	ENSGT00940000158723	ENSGT01070000253816.a.b	ENSGT00530000063353.b	ENSGT00390000009902	ENSGT01100000263512.b.b.b	ENSGT00940000162744	ENSGT00940000153476.b.m.b	ENSGT00950000182941.b.a	ENSGT00940000154833	ENSGT00910000147399	ENSGT00940000153460.c.b	ENSGT00510000047104
Cercopithecidae	ANCESTRAL SPECIES	19	ENSGT00940000160971	ENSGT00940000163956.c.b	ENSGT00940000165112	ENSGT00940000164535.a	ENSGT00940000164535.b	ENSGT00940000164981	ENSGT00940000162721	ENSGT00940000162359	ENSGT00390000002886.b.b	ENSGT00390000004226	ENSGT00940000158878	ENSGT00940000156974	ENSGT00940000159516	ENSGT00940000163347	ENSGT00940000160788	ENSGT00940000153500.a.a.k.a.b #22	ENSGT00940000162539	ENSGT00940000163390	ENSGT00940000153425.b	ENSGT00940000158723	ENSGT01070000253816.a.b	ENSGT00530000063353.b	ENSGT00390000009902	ENSGT01100000263512.b.b.b	ENSGT00940000162744	ENSGT00950000182941.b.a	ENSGT00940000154833.s.a	ENSGT00910000147399	ENSGT00940000153460.c.b	ENSGT00510000047104	ENSGT00390000016655.a.a.a.b
Rhinopithecus	DUPLICATION
Rhinopithecus	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.k.a.b.a #22
Golden snub-nosed monkey	MODERN SPECIES	3310																ENSRROG00000031240 #22
Black snub-nosed monkey	MODERN SPECIES	1209																ENSRBIG00000033237 #22
Rhinopithecus	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.k.a.b.b #22
Golden snub-nosed monkey	MODERN SPECIES	60																ENSRROG00000034736 #22
Cercopithecinae	ANCESTRAL SPECIES	13	ENSGT00940000160971	ENSGT00940000163956.c.b	ENSGT00940000165112	ENSGT00940000164535.a	ENSGT00940000164535.b	ENSGT00940000164981	ENSGT00940000162721	ENSGT00940000162359	ENSGT00390000002886.b.b	ENSGT00390000004226	ENSGT00940000158878	ENSGT00940000156974	ENSGT00940000159516	ENSGT00940000163347	ENSGT00940000160788	ENSGT00940000153500.a.a.k.a.b #22	ENSGT00940000162539	ENSGT00940000163390	ENSGT00940000153425.b	ENSGT00940000158723	ENSGT01070000253816.a.b	ENSGT00530000063353.b	ENSGT00390000009902	ENSGT01100000263512.b.b.b	ENSGT00940000162744	ENSGT00950000182941.b.a	ENSGT00940000154833.s.a	ENSGT00910000147399	ENSGT00940000153460.c.b	ENSGT00510000047104	ENSGT00390000016655.a.a.a.b.d.b
Cercopithecinae_a	ANCESTRAL SPECIES	11	ENSGT00940000165112	ENSGT00940000164535.a	ENSGT00940000164535.b.b	ENSGT01010000223978	ENSGT00390000013647	ENSGT00940000162359	ENSGT00390000002886.b.b	ENSGT00390000004226	ENSGT00940000158878	ENSGT00940000156974	ENSGT00940000159516	ENSGT00390000009320	ENSGT00940000163347	ENSGT00940000155476.h	ENSGT00940000160788	ENSGT00940000153500.a.a.k.a.b #22	ENSGT00940000162539	ENSGT00940000163390	ENSGT00940000153425.b	ENSGT00940000158723	ENSGT01070000253816.a.b	ENSGT00530000063353.b	ENSGT00390000009902	ENSGT01100000263512.b.b.b	ENSGT00940000162744	ENSGT00950000182941.b.a	ENSGT00940000154833.s.a	ENSGT00910000147399	ENSGT00940000153460.c.b	ENSGT00510000047104	ENSGT00390000016655.a.a.a.b.d.b
Macaca	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.k.a.b #22
Pig-tailed macaque	MODERN SPECIES	572						SOX3 (ENSMNEG00000025961)	ENSMNEG00000000177	CXorf66 (ENSMNEG00000038844)	ATP11C (ENSMNEG00000034736)	MCF2 (ENSMNEG00000041163)	F9 (ENSMNEG00000008625)	ENSMNEG00000021138	ENSMNEG00000036539	ENSMNEG00000042369	ZIC3 (ENSMNEG00000040682)	ENSMNEG00000041262 #22	ENSMNEG00000035645	GPR101 (ENSMNEG00000019061)	ENSMNEG00000033588	ENSMNEG00000039712	ARHGEF6 (ENSMNEG00000016073)	CD40LG (ENSMNEG00000039285)	VGLL1 (ENSMNEG00000035420)	HTATSF1 (ENSMNEG00000024084)	BRS3 (ENSMNEG00000031855)	ADGRG4 (ENSMNEG00000029288)	MAP7D3 (ENSMNEG00000029479)	ENSMNEG00000040336	ENSMNEG00000038262	SLC9A6 (ENSMNEG00000043541)	MMGT1 (ENSMNEG00000033481)
Cercopithecinae_b	ANCESTRAL SPECIES	45	ENSGT00940000164981	ENSGT00910000146818	ENSGT00940000162721	ENSGT00890000139472.a.b	ENSGT00390000013647	ENSGT00940000162359	ENSGT00390000002886.b.b	ENSGT00390000004226	ENSGT00940000158878	ENSGT00940000156974	ENSGT00940000159516	ENSGT00390000009320	ENSGT00940000163347	ENSGT00940000155476.h	ENSGT00940000160788	ENSGT00940000153500.a.a.k.a.b #22	ENSGT00940000162539	ENSGT00940000163390	ENSGT00940000153425.b	ENSGT01000000214719.a	ENSGT00940000158723	ENSGT01070000253816.a.b	ENSGT00530000063353.b	ENSGT00390000009902	ENSGT01100000263512.b.b.b	ENSGT00940000162744	ENSGT00950000182941.b.a	ENSGT00940000154833.s.a	ENSGT00940000153460.c.b	ENSGT00510000047104	ENSGT00390000016655.a.a.a.b.d.b
Cercopithecinae_d	ANCESTRAL SPECIES	128	ENSGT00940000164981	ENSGT00910000146818	ENSGT00940000162721	ENSGT00890000139472.a.b	ENSGT00390000013647	ENSGT00940000162359	ENSGT00390000002886.b.b	ENSGT00390000004226	ENSGT00940000158878	ENSGT00940000156974	ENSGT00940000159516	ENSGT00390000009320	ENSGT00940000163347	ENSGT00940000155476.h	ENSGT00940000160788	ENSGT00940000153500.a.a.k.a.b #22	ENSGT00940000162539	ENSGT00730000111080.b.l	ENSGT00940000153425.b	ENSGT01000000214719.a	ENSGT00940000158723	ENSGT01070000253816.a.b	ENSGT00530000063353.b	ENSGT00390000009902	ENSGT01100000263512.b.b.b	ENSGT00940000162744	ENSGT00950000182941.b.a	ENSGT00940000154833.s.a	ENSGT00940000153460.c.b	ENSGT00510000047104	ENSGT00390000016655.a.a.a.b.d.b
Drill	MODERN SPECIES	1142														ENSMLEG00000035106	ZIC3 (ENSMLEG00000004378)	ENSMLEG00000031538 #22	GPR101 (ENSMLEG00000026912)	ENSMLEG00000032221	ENSMLEG00000028215	ENSMLEG00000021095	ENSMLEG00000020799	ARHGEF6 (ENSMLEG00000026561)	CD40LG (ENSMLEG00000042928)	VGLL1 (ENSMLEG00000040123)	HTATSF1 (ENSMLEG00000035511)	BRS3 (ENSMLEG00000034212)	ADGRG4 (ENSMLEG00000029336)	MAP7D3 (ENSMLEG00000028761)	ENSMLEG00000006125
Hominoidea	DUPLICATION
Hominoidea	ANCESTRAL SPECIES	29	ENSGT00940000164535.a	ENSGT00940000164535.b	ENSGT00940000164981	ENSGT00940000162721	ENSGT01010000223978	ENSGT00390000013647	ENSGT00940000162359	ENSGT00390000002886.b.b	ENSGT00390000004226	ENSGT00940000158878	ENSGT00940000156974	ENSGT00940000159516	ENSGT00940000162313	ENSGT00940000163347	ENSGT00940000160788	ENSGT00940000153500.a.a.k.a.b.c #22	ENSGT00940000162539	ENSGT00940000153425.a.a.b.b	ENSGT00940000165003	ENSGT01000000214719	ENSGT00940000158723	ENSGT01070000253816.a.b	ENSGT00530000063353.b	ENSGT00390000009902	ENSGT01100000263512.b.b.b	ENSGT00940000162744	ENSGT00940000153476.b.m.b	ENSGT00950000182941.b.a	ENSGT00940000154833	ENSGT00910000147399	ENSGT00940000153460.c.b
Hominidae	ANCESTRAL SPECIES	8	ENSGT00940000164535.a	ENSGT00940000164535.b	ENSGT00940000164981	ENSGT00910000146818	ENSGT01010000223978	ENSGT00390000013647	ENSGT00940000162359	ENSGT00390000002886.b.b	ENSGT00390000004226	ENSGT00940000158878	ENSGT00940000156974	ENSGT00940000159516	ENSGT00940000162313	ENSGT00940000163347	ENSGT00940000160788	ENSGT00940000153500.a.a.k.a.b.c #22	ENSGT00940000162539	ENSGT00940000153425.a.a.b.b	ENSGT00940000158723	ENSGT01070000253816.a.b	ENSGT00530000063353.b	ENSGT00390000009902	ENSGT01100000263512.b.b.b	ENSGT00940000162744	ENSGT00940000153476.b.m.b	ENSGT00950000182941.b.a	ENSGT00940000154833	ENSGT00910000147399	ENSGT00940000153460.c.b	ENSGT00510000047104	ENSGT00390000016655.a.a.a.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	9	ENSGT00940000164535.a	ENSGT00940000164535.b	ENSGT00940000164981	ENSGT00910000146818	ENSGT01010000223978	ENSGT00390000013647	ENSGT00940000162359	ENSGT00390000002886.b.b	ENSGT00390000004226	ENSGT00940000158878	ENSGT00940000156974	ENSGT00940000159516	ENSGT00940000162313	ENSGT00940000163347	ENSGT00940000160788	ENSGT00940000153500.a.a.k.a.b.c #22	ENSGT00940000162539	ENSGT00940000153425.a.a.b.b	ENSGT00940000165003	ENSGT01000000214719	ENSGT00940000158723	ENSGT01070000253816.a.b	ENSGT00530000063353.b	ENSGT00390000009902	ENSGT01100000263512.b.b.b	ENSGT00940000162744	ENSGT00940000153476.b.m.b	ENSGT00950000182941.b.a	ENSGT00940000154833	ENSGT00910000147399	ENSGT00940000153460.c.b
Gorilla	MODERN SPECIES	523	ENSGGOG00000037757	ENSGGOG00000008654	ENSGGOG00000002221	ENSGGOG00000026272	ENSGGOG00000042700	ENSGGOG00000041264	ENSGGOG00000013898	ENSGGOG00000037930	CXorf66 (ENSGGOG00000025523)	ATP11C (ENSGGOG00000001112)	MCF2 (ENSGGOG00000004477)	F9 (ENSGGOG00000000618)	ENSGGOG00000042381	ENSGGOG00000009891	ZIC3 (ENSGGOG00000011914)	ENSGGOG00000026094 #22	GPR101 (ENSGGOG00000005255)	ENSGGOG00000040799	ENSGGOG00000027619	ENSGGOG00000027459	ENSGGOG00000037784	ARHGEF6 (ENSGGOG00000013983)	CD40LG (ENSGGOG00000010483)	VGLL1 (ENSGGOG00000006552)	HTATSF1 (ENSGGOG00000026072)	BRS3 (ENSGGOG00000003297)	ADGRG4 (ENSGGOG00000025527)	ENSGGOG00000041317	MAP7D3 (ENSGGOG00000003029)	ENSGGOG00000010054	SLC9A6 (ENSGGOG00000006724)
Homo/Pan group	ANCESTRAL SPECIES	9	ENSGT00940000163956.c	ENSGT00940000165112	ENSGT00940000164535.a	ENSGT00940000164535.b	ENSGT00940000164981	ENSGT00910000146818	ENSGT00730000111796	ENSGT00940000162359	ENSGT00390000002886.b.b	ENSGT00390000004226	ENSGT00940000158878	ENSGT00940000156974	ENSGT00940000159516	ENSGT00940000162313	ENSGT00940000160788	ENSGT00940000153500.a.a.k.a.b.c #22	ENSGT00940000162539	ENSGT00940000153425.a.a.b.b	ENSGT00940000165003	ENSGT01000000214719	ENSGT00940000158723	ENSGT01070000253816.a.b	ENSGT00530000063353.b	ENSGT00390000009902	ENSGT01100000263512.b.b.b	ENSGT00940000162744	ENSGT00940000153476.b.m.b	ENSGT00950000182941.b.a	ENSGT00940000154833	ENSGT00910000147399	ENSGT00940000153460.c.b
Pan	ANCESTRAL SPECIES	6	ENSGT00940000164535.b	ENSGT00940000164981	ENSGT00910000146818	ENSGT00730000111796	ENSGT00940000162359	ENSGT00390000002886.b.b	ENSGT00940000153147.m.a.a.a.a.b.a.a.a	ENSGT00390000004226	ENSGT00940000158878	ENSGT00940000156974	ENSGT00940000159516	ENSGT00910000148205	ENSGT00950000183029.B.c.b.b.a.d	ENSGT00940000162313	ENSGT00940000160788	ENSGT00940000153500.a.a.k.a.b.c #22	ENSGT00940000162539	ENSGT00940000165733	ENSGT00940000153425.a.a.b.b	ENSGT00940000165003	ENSGT01000000214719	ENSGT00940000158723	ENSGT01070000253816.a.b	ENSGT00530000063353.b	ENSGT00390000009902	ENSGT01100000263512.b.b.b	ENSGT00940000162744	ENSGT00940000153476.b.m.b	ENSGT00950000182941.b.a	ENSGT00940000154833	ENSGT00910000147399
Bonobo	MODERN SPECIES	369	MAGEC2 (ENSPPAG00000026474)	ENSPPAG00000026388	ENSPPAG00000030721	ENSPPAG00000026521	ENSPPAG00000025131	ENSPPAG00000023819	ENSPPAG00000037228	CXorf66 (ENSPPAG00000038036)	ATP11C (ENSPPAG00000043527)	MCF2 (ENSPPAG00000034608)	F9 (ENSPPAG00000039904)	ENSPPAG00000037956	ENSPPAG00000028602	FGF13 (ENSPPAG00000035766)	ZIC3 (ENSPPAG00000030013)	ENSPPAG00000037272 #22	GPR101 (ENSPPAG00000016837)	ENSPPAG00000036722	RBMX (ENSPPAG00000028409)	ENSPPAG00000022910	ENSPPAG00000034899	ARHGEF6 (ENSPPAG00000028700)	CD40LG (ENSPPAG00000042603)	VGLL1 (ENSPPAG00000035917)	HTATSF1 (ENSPPAG00000024268)	BRS3 (ENSPPAG00000031235)	ADGRG4 (ENSPPAG00000040242)	ENSPPAG00000025451	MAP7D3 (ENSPPAG00000033016)	ENSPPAG00000034865	ENSPPAG00000011049
Gibbon	MODERN SPECIES	449	SLITRK4 (ENSNLEG00000034309)	ENSNLEG00000035725	ENSNLEG00000032077	ENSNLEG00000001381	LDOC1 (ENSNLEG00000002160)	ENSNLEG00000034744	SOX3 (ENSNLEG00000018830)	ENSNLEG00000027108	CXorf66 (ENSNLEG00000003353)	ATP11C (ENSNLEG00000003317)	MCF2 (ENSNLEG00000003068)	F9 (ENSNLEG00000003035)	ENSNLEG00000032994	ENSNLEG00000003011	ENSNLEG00000003005	ENSNLEG00000032935 #22	GPR101 (ENSNLEG00000018828)	ENSNLEG00000031294	RBMX (ENSNLEG00000002964)	ENSNLEG00000035535	ARHGEF6 (ENSNLEG00000002838)	CD40LG (ENSNLEG00000002818)	VGLL1 (ENSNLEG00000002785)	HTATSF1 (ENSNLEG00000002746)	BRS3 (ENSNLEG00000002740)	ADGRG4 (ENSNLEG00000002681)	ENSNLEG00000035956	MAP7D3 (ENSNLEG00000002667)	ENSNLEG00000002560	SLC9A6 (ENSNLEG00000002336)	MMGT1 (ENSNLEG00000002320)
Hominoidea	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.k.a.b.d #22
Gibbon	MODERN SPECIES	7	BAIAP2L1 (ENSNLEG00000033877)	ENSNLEG00000035321 #7	ENSNLEG00000012944	TECPR1 (ENSNLEG00000010642) #8	BHLHA15 (ENSNLEG00000018875) #9	ENSNLEG00000027958	LMTK2 (ENSNLEG00000010627) #10	ENSNLEG00000035464	ENSNLEG00000000939 #14	AIMP2 (ENSNLEG00000035742) #15	ANKRD61 (ENSNLEG00000001091) #16	EIF2AK1 (ENSNLEG00000000992) #17	USP42 (ENSNLEG00000001092) #18	CYTH3 (ENSNLEG00000001145) #19	ENSNLEG00000001188	ENSNLEG00000015697 #22	DAGLB (ENSNLEG00000015668) #23	KDELR2 (ENSNLEG00000015662) #24	GRID2IP (ENSNLEG00000015646) #25	ZDHHC4 (ENSNLEG00000015607) #26	INTS15 (ENSNLEG00000015599) #27	ENSNLEG00000015596 #29	ZNF12 (ENSNLEG00000027354) #30	ENSNLEG00000036079	ENSNLEG00000036045 #14	ENSNLEG00000015579 #13	ENSNLEG00000026665 #12	RNF216 (ENSNLEG00000015530) #35	ENSNLEG00000028647 #36	ENSNLEG00000027252	ACTB (ENSNLEG00000015506) #37
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.k.a.b #22
Cebidae	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.k.a.b #22
Cebidae_a	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.k.a.b #22
Capuchin	MODERN SPECIES	389						CCR6 (ENSCCAG00000023108)	CEP43 (ENSCCAG00000002534)	RNASET2 (ENSCCAG00000022079)	RPS6KA2 (ENSCCAG00000032079)	MPC1 (ENSCCAG00000027814)	SFT2D1 (ENSCCAG00000030562)	PRR18 (ENSCCAG00000031870)	TBXT (ENSCCAG00000024677)	ENSCCAG00000037393	ENSCCAG00000022749	ENSCCAG00000019705 #22	ENSCCAG00000036924	ENSCCAG00000034417	ENSCCAG00000029815	ENSCCAG00000020853	C6orf118 (ENSCCAG00000037689)
Simiiformes	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.k.b #22
Platyrrhini	DUPLICATION
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.k.b.a #22
Mas night monkey	MODERN SPECIES	278	MMP20 (ENSANAG00000021702)	MMP7 (ENSANAG00000023347)	TMEM123 (ENSANAG00000029026)	BIRC2 (ENSANAG00000037030)	BIRC3 (ENSANAG00000035989)	ENSANAG00000022618	YAP1 (ENSANAG00000029463)	CFAP300 (ENSANAG00000023658)	CEP126 (ENSANAG00000033095)	ANGPTL5 (ENSANAG00000025830)	TRPC6 (ENSANAG00000032595)	PGR (ENSANAG00000036519)	ARHGAP42 (ENSANAG00000033530)	ENSANAG00000026824	CNTN5 (ENSANAG00000024170)	ENSANAG00000022382 #22	CCDC82 (ENSANAG00000025591)	MAML2 (ENSANAG00000022462)	MTMR2 (ENSANAG00000028178)	CEP57 (ENSANAG00000033666)	FAM76B (ENSANAG00000027519)	SESN3 (ENSANAG00000032229)	ENSANAG00000031662	ENDOD1 (ENSANAG00000036222)	SRSF8 (ENSANAG00000031642)	ENSANAG00000022615	CWC15 (ENSANAG00000020484)
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.k.b.b #22
Mas night monkey	MODERN SPECIES	556	BRI3 (ENSANAG00000027654) #7	TECPR1 (ENSANAG00000034833) #8	LMTK2 (ENSANAG00000030215) #10	ENSANAG00000024814 #11	ENSANAG00000034191 #12	ENSANAG00000008157 #13	PMS2 (ENSANAG00000030348) #14	ENSANAG00000009006	AIMP2 (ENSANAG00000029275) #15	ENSANAG00000030962 #17	ANKRD61 (ENSANAG00000030693) #16	USP42 (ENSANAG00000033749) #18	CYTH3 (ENSANAG00000018615) #19	ENSANAG00000036757	ENSANAG00000019572	ENSANAG00000035216 #22	DAGLB (ENSANAG00000036166) #23	KDELR2 (ENSANAG00000020944) #24	GRID2IP (ENSANAG00000036999) #25	ZDHHC4 (ENSANAG00000037416) #26	INTS15 (ENSANAG00000025698) #27	ZNF853 (ENSANAG00000038386) #28	ZNF316 (ENSANAG00000009762) #29	ZNF12 (ENSANAG00000035969) #30	RBAK (ENSANAG00000036404) #33
Cebidae	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.k.b.b #22
Cebidae_a	ANCESTRAL SPECIES	19	ENSGT00940000153560.b.b.a.c	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.d	ENSGT00390000015826 #15	ENSGT00940000157605.c #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.b.b #22	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A.a.a #31	ENSGT00940000154303.A.b #33	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36	ENSGT00950000182960.a.a.a.a.b.rb.o #37	ENSGT00390000015109
Bolivian squirrel monkey	MODERN SPECIES	104	NPTX2 (ENSSBOG00000029192)	ENSSBOG00000018064	ENSSBOG00000032858 #7	TECPR1 (ENSSBOG00000018971) #8	LMTK2 (ENSSBOG00000035095) #10	ENSSBOG00000021103 #11	ENSSBOG00000032415 #12	ENSSBOG00000031799 #13	PMS2 (ENSSBOG00000028728) #14	ENSSBOG00000027924	AIMP2 (ENSSBOG00000024906) #15	EIF2AK1 (ENSSBOG00000026446) #17	ANKRD61 (ENSSBOG00000024193) #16	USP42 (ENSSBOG00000032011) #18	CYTH3 (ENSSBOG00000026269) #19	ENSSBOG00000024828 #22	DAGLB (ENSSBOG00000034747) #23	KDELR2 (ENSSBOG00000025326) #24	GRID2IP (ENSSBOG00000029841) #25	ZDHHC4 (ENSSBOG00000036004) #26	INTS15 (ENSSBOG00000034408) #27	ZNF853 (ENSSBOG00000021317) #28	ZNF316 (ENSSBOG00000025746) #29	ZNF12 (ENSSBOG00000033261) #30	RBAK (ENSSBOG00000030800) #33	RNF216 (ENSSBOG00000011526) #35	FSCN1 (ENSSBOG00000025510) #36
Catarrhini	ANCESTRAL SPECIES	6	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713.c #12	ENSGT00940000170143	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.b #22	ENSGT00390000014156.c #20	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A.a.d #31
Hominoidea	ANCESTRAL SPECIES	6	ENSGT00940000157099	ENSGT00390000015109	ENSGT00950000182960.a.a.a.a.b.rb.x #37	ENSGT00940000154172.gb.a	ENSGT00950000183157.a.a.b #36	ENSGT00510000048032 #35	ENSGT00390000004713.c #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.b #22	ENSGT00390000014156.c #20	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00390000004713.d #12	ENSGT00940000161875 #11	ENSGT00940000158475 #10	ENSGT00940000161824 #9
Hominidae	ANCESTRAL SPECIES	26	ENSGT00940000157099	ENSGT00390000015109	ENSGT00950000182960.a.a.a.a.b.rb.x #37	ENSGT00940000154172.gb.a	ENSGT00950000183157.a.a.b #36	ENSGT00510000048032 #35	ENSGT00390000004713.c #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.b #22	ENSGT00390000014156.c #20	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A.a.c.a #31	ENSGT00940000154303.C.g.b ##30	ENSGT00940000153253.b.a.g	ENSGT00940000155974.i.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	31									ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156.c #20	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.b #22	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A.a.c.a.a #31	ENSGT00940000155381.s #14	ENSGT00940000159899 #13	ENSGT00390000004713.c #12	ENSGT00940000161875.c.a #11
Homo/Pan group	ANCESTRAL SPECIES	30									ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156.c #20	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.b #22	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A.a.c.a.a #31	ENSGT00940000155381.s #14	ENSGT00940000159899 #13	ENSGT00390000004713.c #12	ENSGT00940000161875.c.a #11
Pan	ANCESTRAL SPECIES	37	ENSGT00950000182960.a.a.a.a.b.rb.x #37	ENSGT00940000154172.gb.a	ENSGT00950000183157.a.a.b.x #36	ENSGT00510000048032 #35	ENSGT00940000161875.c.a #11	ENSGT00390000004713.c #12	ENSGT00940000159899 #13	ENSGT00940000155381.s.a #14	ENSGT00390000015826 #15	ENSGT00840000130004 #16	ENSGT00940000157605 #17	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156.c #20	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.b #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A.a.c.a.a #31
Chimpanzee	MODERN SPECIES	20	MIOS (ENSPTRG00000018926)	COL28A1 (ENSPTRG00000034434)	C1GALT1 (ENSPTRG00000048932)	ENSPTRG00000047119	ENSPTRG00000049642	ENSPTRG00000046263	CCZ1 (ENSPTRG00000051931) #12	ENSPTRG00000018921 #13	PMS2 (ENSPTRG00000018902) #14	AIMP2 (ENSPTRG00000018903) #15	ANKRD61 (ENSPTRG00000018905) #16	EIF2AK1 (ENSPTRG00000018904) #17	USP42 (ENSPTRG00000018906) #18	CYTH3 (ENSPTRG00000018907) #19	ENSPTRG00000028666	RAC1 (ENSPTRG00000018910) #22	ENSPTRG00000051819 #23	ENSPTRG00000043578 #29	ENSPTRG00000018919 #30	ENSPTRG00000018920 #14	ENSPTRG00000051187 #13	ENSPTRG00000048336 #12	OCM (ENSPTRG00000018896) #11	RNF216 (ENSPTRG00000018894) #35	FSCN1 (ENSPTRG00000018892) #36	ENSPTRG00000052762	ACTB (ENSPTRG00000018890) #37	FBXL18 (ENSPTRG00000018889)	TNRC18 (ENSPTRG00000018886)	SLC29A4 (ENSPTRG00000018884)	WIPI2 (ENSPTRG00000018882)
Bonobo	MODERN SPECIES	20	SLC29A4 (ENSPPAG00000038957)	ENSPPAG00000040010	FBXL18 (ENSPPAG00000027621)	ACTB (ENSPPAG00000037371) #37	ENSPPAG00000033354	ENSPPAG00000041475 #36	RNF216 (ENSPPAG00000032864) #35	ENSPPAG00000033714 #13	PMS2 (ENSPPAG00000014830) #14	AIMP2 (ENSPPAG00000035344) #15	EIF2AK1 (ENSPPAG00000038784) #17	ANKRD61 (ENSPPAG00000042004) #16	USP42 (ENSPPAG00000029844) #18	CYTH3 (ENSPPAG00000032310) #19	ENSPPAG00000042160	ENSPPAG00000032857 #22	DAGLB (ENSPPAG00000031293) #23	ENSPPAG00000038445 #24	GRID2IP (ENSPPAG00000004060) #25	ZDHHC4 (ENSPPAG00000030859) #26	ENSPPAG00000018724	ENSPPAG00000027476 #27	ZNF853 (ENSPPAG00000036068) #28	ZNF12 (ENSPPAG00000029109) #30	ENSPPAG00000033351 #31	ENSPPAG00000038166 #12	ENSPPAG00000008012	ENSPPAG00000038462	ENSPPAG00000033611	C1GALT1 (ENSPPAG00000029814)	ENSPPAG00000010276
Cercopithecidae	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.k.b #22
Rhinopithecus	ANCESTRAL SPECIES	275							ENSGT00390000004713.c #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.b #22	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30
Black snub-nosed monkey	MODERN SPECIES	2629									PMS2 (ENSRBIG00000039533) #14	AIMP2 (ENSRBIG00000022538) #15	ANKRD61 (ENSRBIG00000032100) #16	EIF2AK1 (ENSRBIG00000030382) #17	USP42 (ENSRBIG00000037425) #18	CYTH3 (ENSRBIG00000037311) #19	ENSRBIG00000041406	ENSRBIG00000028419 #22	DAGLB (ENSRBIG00000007723) #23	KDELR2 (ENSRBIG00000036725) #24	GRID2IP (ENSRBIG00000044379) #25	ZDHHC4 (ENSRBIG00000039493) #26	ENSRBIG00000025504	INTS15 (ENSRBIG00000037129) #27	ZNF853 (ENSRBIG00000031607) #28	ZNF316 (ENSRBIG00000028843) #29	ZNF12 (ENSRBIG00000033547) #30
Cercopithecinae	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.k.b #22
Cercopithecinae_a	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.k.b #22
Macaca	ANCESTRAL SPECIES	91															ENSGT00390000014156.c #20	ENSGT00940000153500.a.a.k.b #22
Macaca_a	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.k.b #22
Rhesus	MODERN SPECIES	13	BRI3 (ENSMMUG00000049558)	TECPR1 (ENSMMUG00000015479) #8	LMTK2 (ENSMMUG00000015477) #10	ENSMMUG00000054767	ENSMMUG00000064257	OCM (ENSMMUG00000049706) #11	ENSMMUG00000007970 #12	ENSMMUG00000030422 #13	PMS2 (ENSMMUG00000030421) #14	AIMP2 (ENSMMUG00000030420) #15	ANKRD61 (ENSMMUG00000045015) #16	EIF2AK1 (ENSMMUG00000030419) #17	USP42 (ENSMMUG00000020321) #18	CYTH3 (ENSMMUG00000003167) #19	FAM220A (ENSMMUG00000014753) #20	RAC1 (ENSMMUG00000021075) #22	DAGLB (ENSMMUG00000010292) #23	KDELR2 (ENSMMUG00000030415) #24	ENSMMUG00000057114	GRID2IP (ENSMMUG00000021839) #25	ZDHHC4 (ENSMMUG00000015545) #26	INTS15 (ENSMMUG00000015546) #27	ZNF853 (ENSMMUG00000038892) #28	ENSMMUG00000064966	ZNF316 (ENSMMUG00000049742) #29	ZNF12 (ENSMMUG00000012343) #30	ENSMMUG00000022624 #31	ENSMMUG00000062930 #12	ENSMMUG00000056983 #11	RNF216 (ENSMMUG00000000182) #35	FSCN1 (ENSMMUG00000004282) #36
Cercopithecinae_b	ANCESTRAL SPECIES	36	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713.c.h #12	ENSGT00390000004713.c.g #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156.c #20	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.b #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A.a.c.a #31
Cercopithecinae_d	ANCESTRAL SPECIES	75	ENSGT00940000153560.b.b.a	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713.c.g #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.b #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A.a.d #31
Sooty mangabey	MODERN SPECIES	630								ENSCATG00000036079 #13	PMS2 (ENSCATG00000031915) #14	AIMP2 (ENSCATG00000031716) #15	EIF2AK1 (ENSCATG00000035736) #17	ANKRD61 (ENSCATG00000033486) #16	USP42 (ENSCATG00000038486) #18	CYTH3 (ENSCATG00000014551) #19	ENSCATG00000039408	ENSCATG00000030206 #22	DAGLB (ENSCATG00000033180) #23	KDELR2 (ENSCATG00000036365) #24	GRID2IP (ENSCATG00000034128) #25	ZDHHC4 (ENSCATG00000025695) #26	ENSCATG00000028674	INTS15 (ENSCATG00000030108) #27	ZNF853 (ENSCATG00000034604) #28	ZNF316 (ENSCATG00000039607) #29	ZNF12 (ENSCATG00000036359) #30	ENSCATG00000034408 #13	ENSCATG00000011606 #12	ENSCATG00000042940 #11	LMTK2 (ENSCATG00000037130) #10	ENSCATG00000017491	BHLHA15 (ENSCATG00000021737) #9
Drill	MODERN SPECIES	1216									PMS2 (ENSMLEG00000031920) #14	AIMP2 (ENSMLEG00000037709) #15	EIF2AK1 (ENSMLEG00000030525) #17	ANKRD61 (ENSMLEG00000039931) #16	USP42 (ENSMLEG00000028936) #18	CYTH3 (ENSMLEG00000041201) #19	ENSMLEG00000034114	ENSMLEG00000002652 #22	DAGLB (ENSMLEG00000029004) #23	KDELR2 (ENSMLEG00000037948) #24	GRID2IP (ENSMLEG00000028015) #25
Simiiformes	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.l #22
Catarrhini	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.l #22
Hominoidea	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.l #22
Gibbon	MODERN SPECIES	11	GINS3 (ENSNLEG00000034569)	NDRG4 (ENSNLEG00000003445)	SETD6 (ENSNLEG00000030055)	CNOT1 (ENSNLEG00000003566)	SLC38A7 (ENSNLEG00000003812)	CDH8 (ENSNLEG00000003851)	CDH11 (ENSNLEG00000003882)	CDH5 (ENSNLEG00000003928)	BEAN1 (ENSNLEG00000033811)	TK2 (ENSNLEG00000035698)	ENSNLEG00000030398	CMTM1 (ENSNLEG00000003970)	CMTM2 (ENSNLEG00000004001)	ENSNLEG00000004003	ENSNLEG00000004009	ENSNLEG00000034866 #22	DYNC1LI2 (ENSNLEG00000004011)	TERB1 (ENSNLEG00000004017)	NAE1 (ENSNLEG00000004047)	CA7 (ENSNLEG00000030802)	CDH16 (ENSNLEG00000004109)	RRAD (ENSNLEG00000004167)	CIAO2B (ENSNLEG00000004172)	ENSNLEG00000004181	CES2 (ENSNLEG00000030391)	CES3 (ENSNLEG00000004206)	ENSNLEG00000004228	CBFB (ENSNLEG00000004277)	PHAF1 (ENSNLEG00000004306)	TRADD (ENSNLEG00000004328)	FBXL8 (ENSNLEG00000004335)
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	1520																ENSTSYG00000001618 #22	DAGLB (ENSTSYG00000003239) #23	KDELR2 (ENSTSYG00000000650) #24	GRID2IP (ENSTSYG00000027905) #25	ZDHHC4 (ENSTSYG00000007686) #26	INTS15 (ENSTSYG00000007701) #27
Tarsier	MODERN SPECIES	4646																ENSTSYG00000025453 #22
Strepsirrhini	ANCESTRAL SPECIES	14	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000170143	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00840000130004 #16	ENSGT00940000157605 #17	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b #34	ENSGT00510000048032 #35	ENSGT00910000147936	ENSGT00950000183157.a.a.b #36	ENSGT00950000182960.a.a.a.a.b.rb #37
Lemuriformes	ANCESTRAL SPECIES	6	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000170143	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00840000130004 #16	ENSGT00940000157605 #17	ENSGT00940000154596.b.db #18	ENSGT00940000154596.b.eb #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154303.A.b #33	ENSGT00510000048032 #35	ENSGT00910000147936	ENSGT00950000183157.a.a.b #36	ENSGT00950000182960.a.a.a.a.b.rb #37	ENSGT00390000015109
Mouse lemur	MODERN SPECIES	8	TECPR1 (ENSMICG00000002874) #8	BHLHA15 (ENSMICG00000036615) #9	LMTK2 (ENSMICG00000002866) #10	ENSMICG00000046401	ENSMICG00000042503 #11	ENSMICG00000012751 #12	ENSMICG00000012768 #13	PMS2 (ENSMICG00000012794) #14	AIMP2 (ENSMICG00000012810) #15	ANKRD61 (ENSMICG00000012853) #16	EIF2AK1 (ENSMICG00000012815) #17	ENSMICG00000044799 #18	ENSMICG00000037327 #18	CYTH3 (ENSMICG00000004355) #19	ENSMICG00000004365	RAC1 (ENSMICG00000047004) #22	DAGLB (ENSMICG00000004369) #23	KDELR2 (ENSMICG00000014334) #24	GRID2IP (ENSMICG00000028041) #25	ZDHHC4 (ENSMICG00000014356) #26	INTS15 (ENSMICG00000014369) #27	ZNF853 (ENSMICG00000034424) #28	ZNF316 (ENSMICG00000045243) #29	ENSMICG00000043386	ENSMICG00000029369	ENSMICG00000008171 #30	ENSMICG00000043328	RBAK (ENSMICG00000044579) #33	ENSMICG00000045766	RNF216 (ENSMICG00000010220) #35	FSCN1 (ENSMICG00000010211) #36
Lemuriformes_a	ANCESTRAL SPECIES	16	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000170143	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00840000130004 #16	ENSGT00940000157605 #17	ENSGT00940000154596.b.db #18	ENSGT00940000154596.b.eb #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154303.A.b #33	ENSGT00510000048032 #35	ENSGT00910000147936	ENSGT00950000183157.a.a.b #36	ENSGT00950000182960.a.a.a.a.b.rb #37	ENSGT00390000015109
Coquerels sifaka	MODERN SPECIES	155	NPTX2 (ENSPCOG00000024897)	BAIAP2L1 (ENSPCOG00000022611)	BRI3 (ENSPCOG00000000280) #7	TECPR1 (ENSPCOG00000015825) #8	LMTK2 (ENSPCOG00000025104) #10	ENSPCOG00000017766 #11	ENSPCOG00000025277 #12	ENSPCOG00000024104 #13	PMS2 (ENSPCOG00000019462) #14	AIMP2 (ENSPCOG00000024068) #15	EIF2AK1 (ENSPCOG00000024245) #17	ANKRD61 (ENSPCOG00000015357) #16	USP42 (ENSPCOG00000018641) #18	CYTH3 (ENSPCOG00000024782) #19	ENSPCOG00000024195	RAC1 (ENSPCOG00000020411) #22	DAGLB (ENSPCOG00000001509) #23	KDELR2 (ENSPCOG00000019889) #24	GRID2IP (ENSPCOG00000025659) #25	ZDHHC4 (ENSPCOG00000023144) #26	INTS15 (ENSPCOG00000007596) #27	ZNF853 (ENSPCOG00000000221) #28	ZNF316 (ENSPCOG00000026860) #29	ENSPCOG00000027965 #30	RBAK (ENSPCOG00000028132) #33	RNF216 (ENSPCOG00000013560) #35	FSCN1 (ENSPCOG00000014914) #36	ACTB (ENSPCOG00000013116) #37	FBXL18 (ENSPCOG00000018422)	TNRC18 (ENSPCOG00000023756)	SLC29A4 (ENSPCOG00000010272)
Greater bamboo lemur	MODERN SPECIES	522	BHLHA15 (ENSPSMG00000003426) #9	LMTK2 (ENSPSMG00000003391) #10	ENSPSMG00000003348 #11	ENSPSMG00000003259 #12	ENSPSMG00000003157	ENSPSMG00000003153 #13	PMS2 (ENSPSMG00000002935) #14	AIMP2 (ENSPSMG00000002869) #15	ANKRD61 (ENSPSMG00000002858) #16	EIF2AK1 (ENSPSMG00000002851) #17	ENSPSMG00000002814 #18	CYTH3 (ENSPSMG00000002677) #19	FAM220A (ENSPSMG00000002627) #20	ENSPSMG00000002622	ENSPSMG00000002616	RAC1 (ENSPSMG00000002582) #22	KDELR2 (ENSPSMG00000002526) #24	GRID2IP (ENSPSMG00000002509) #25	ZDHHC4 (ENSPSMG00000002484) #26	INTS15 (ENSPSMG00000002471) #27	ZNF853 (ENSPSMG00000002441) #28	ZNF316 (ENSPSMG00000002435) #29	ENSPSMG00000002122	ZNF12 (ENSPSMG00000001838) #30
Bushbaby	MODERN SPECIES	207															ENSOGAG00000025751	RAC1 (ENSOGAG00000017027) #22	DAGLB (ENSOGAG00000017029) #23	KDELR2 (ENSOGAG00000025999) #24	GRID2IP (ENSOGAG00000034523) #25	ZDHHC4 (ENSOGAG00000000437) #26	INTS15 (ENSOGAG00000000438) #27	ZNF316 (ENSOGAG00000028380) #29	ENSOGAG00000025231	ZNF12 (ENSOGAG00000028373) #30	RBAK (ENSOGAG00000006946) #33	ENSOGAG00000027519 #34	RNF216 (ENSOGAG00000006315) #35	FSCN1 (ENSOGAG00000025060) #36	ENSOGAG00000008348 #37	FBXL18 (ENSOGAG00000008341)	TNRC18 (ENSOGAG00000027824)
Laurasiatheria	ANCESTRAL SPECIES	10	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000170143	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00960000187139	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b #34	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36
Laurasiatheria_a	ANCESTRAL SPECIES	12	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000170143	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00960000187139	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b #34	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36
Artiodactyla	ANCESTRAL SPECIES	10	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00960000187139	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b #34	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36	ENSGT00950000182960.a.a.a.a.b.rb #37
Suina	ANCESTRAL SPECIES	46	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00840000130004 #16	ENSGT00940000157605 #17	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b #34	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36	ENSGT00950000182960.a.a.a.a.b.rb #37	ENSGT00390000015109
Pig	MODERN SPECIES	11	BAIAP2L1 (ENSSSCG00000007602)	BRI3 (ENSSSCG00000037605) #7	TECPR1 (ENSSSCG00000007601) #8	BHLHA15 (ENSSSCG00000038489) #9	LMTK2 (ENSSSCG00000007599) #10	ENSSSCG00000007596 #11	ENSSSCG00000025940 #12	ENSSSCG00000007589 #13	PMS2 (ENSSSCG00000007590) #14	AIMP2 (ENSSSCG00000024245) #15	ANKRD61 (ENSSSCG00000007593) #16	EIF2AK1 (ENSSSCG00000007592) #17	USP42 (ENSSSCG00000032705) #18	CYTH3 (ENSSSCG00000034768) #19	ENSSSCG00000047832	RAC1 (ENSSSCG00000035090) #22	DAGLB (ENSSSCG00000027288) #23	KDELR2 (ENSSSCG00000031432) #24	GRID2IP (ENSSSCG00000037070) #25	ZDHHC4 (ENSSSCG00000039719) #26	INTS15 (ENSSSCG00000036192) #27	ZNF853 (ENSSSCG00000037890) #28	ZNF316 (ENSSSCG00000023378) #29	ENSSSCG00000008665	ZNF12 (ENSSSCG00000034517) #30	ENSSSCG00000032257 #31	RBAK (ENSSSCG00000008668) #33	ENSSSCG00000031365 #34	ENSSSCG00000052755	RNF216 (ENSSSCG00000021285) #35	FSCN1 (ENSSSCG00000007586) #36
Chacoan peccary	MODERN SPECIES	833	BRI3 (ENSCWAG00000010841) #7	TECPR1 (ENSCWAG00000010756) #8	BHLHA15 (ENSCWAG00000010732) #9	LMTK2 (ENSCWAG00000010619) #10	ENSCWAG00000010569 #11	ENSCWAG00000010481 #12	ENSCWAG00000010359 #13	PMS2 (ENSCWAG00000010164) #14	AIMP2 (ENSCWAG00000010081) #15	ANKRD61 (ENSCWAG00000010045) #16	EIF2AK1 (ENSCWAG00000010001) #17	USP42 (ENSCWAG00000009829) #18	CYTH3 (ENSCWAG00000009772) #19	FAM220A (ENSCWAG00000009757) #20	ENSCWAG00000009732	RAC1 (ENSCWAG00000009644) #22	DAGLB (ENSCWAG00000009568) #23	KDELR2 (ENSCWAG00000009516) #24	GRID2IP (ENSCWAG00000008513) #25	ENSCWAG00000008394 #26	INTS15 (ENSCWAG00000008254) #27	ZNF316 (ENSCWAG00000008130) #29	ZNF12 (ENSCWAG00000007983) #30	ENSCWAG00000007902 #31	RBAK (ENSCWAG00000007855) #33	RNF216 (ENSCWAG00000020194) #35	FSCN1 (ENSCWAG00000020177) #36	ACTB (ENSCWAG00000020160) #37	FBXL18 (ENSCWAG00000020141)	TNRC18 (ENSCWAG00000019752)	SLC29A4 (ENSCWAG00000019677)
Artiodactyla_a	ANCESTRAL SPECIES	10	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00960000187139	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b #34	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36	ENSGT00950000182960.a.a.a.a.b.rb #37
Artiodactyla_b	ANCESTRAL SPECIES	9	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00960000187139	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b #34	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36	ENSGT00950000182960.a.a.a.a.b.rb #37	ENSGT00390000015109
Cetacea	ANCESTRAL SPECIES	3	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT00940000154303.C ##30	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b.u #36	ENSGT00950000182960.a.a.a.a.b.rb #37	ENSGT00390000015109
Odontoceti	ANCESTRAL SPECIES	3	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT00940000154303.C ##30	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b.u #36	ENSGT00950000182960.a.a.a.a.b.rb #37	ENSGT00390000015109
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES	5	BRI3 (ENSPCTG00005013964) #7	TECPR1 (ENSPCTG00005014032) #8	BHLHA15 (ENSPCTG00005014363) #9	LMTK2 (ENSPCTG00005014425) #10	OCM2 (ENSPCTG00005014893) #11	CCZ1 (ENSPCTG00005014972) #12	ENSPCTG00005015255 #13	PMS2 (ENSPCTG00005015618) #14	AIMP2 (ENSPCTG00005015738) #15	EIF2AK1 (ENSPCTG00005015824) #17	ENSPCTG00005015924	USP42 (ENSPCTG00005016015) #18	CYTH3 (ENSPCTG00005016072) #19	FAM220A (ENSPCTG00005016247) #20	ENSPCTG00005016265	RAC1 (ENSPCTG00005016300) #22	DAGLB (ENSPCTG00005016386) #23	ZNF316 (ENSPCTG00005016544) #29	ENSPCTG00005016653	ENSPCTG00005016669	C14H7orf26 (ENSPCTG00005016757) #27	ZDHHC4 (ENSPCTG00005016951) #26	RBAK (ENSPCTG00005016990) #33	ENSPCTG00005017024 ##30	RNF216 (ENSPCTG00005017081) #35	ACTB (ENSPCTG00005017252) #37	TNRC18 (ENSPCTG00005017434)	MMD2 (ENSPCTG00005017807)	RADIL (ENSPCTG00005017969)	AP5Z1 (ENSPCTG00005018171)	FOXK1 (ENSPCTG00005018245)
Sperm whale	MODERN SPECIES		ACTL6A (ENSPCTG00005002626)	MRPL47 (ENSPCTG00005002655)	NDUFB5 (ENSPCTG00005002691)	USP13 (ENSPCTG00005002736)	PEX5L (ENSPCTG00005002908)	ENSPCTG00005003697	ENSPCTG00005003702	TTC14 (ENSPCTG00005003714)	CCDC39 (ENSPCTG00005003737)	FXR1 (ENSPCTG00005003785)	ENSPCTG00005003919	SOX2 (ENSPCTG00005003937)	ENSPCTG00005003941	ENSPCTG00005003956	ATP11B (ENSPCTG00005004005)	ENSPCTG00005005564 #22	DCUN1D1 (ENSPCTG00005005589)	ENSPCTG00005005649	MCCC1 (ENSPCTG00005005715)	LAMP3 (ENSPCTG00005005882)	MCF2L2 (ENSPCTG00005005943)	B3GNT5 (ENSPCTG00005005989)	KLHL6 (ENSPCTG00005006059)	YEATS2 (ENSPCTG00005006122)	MAP6D1 (ENSPCTG00005006390)	PARL (ENSPCTG00005006429)	ENSPCTG00005006473	ABCC5 (ENSPCTG00005006520)	ENSPCTG00005006600	ENSPCTG00005006643	ENSPCTG00005006684
Odontoceti_a	ANCESTRAL SPECIES	3	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT00940000154303.C ##30	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b.u #36	ENSGT00950000182960.a.a.a.a.b.rb #37	ENSGT00390000015109
Dolphin	MODERN SPECIES	482																RAC1 (ENSTTRG00000004989) #22	DAGLB (ENSTTRG00000004990) #23	KDELR2 (ENSTTRG00000004994) #24	GRID2IP (ENSTTRG00000004998) #25	ZDHHC4 (ENSTTRG00000005001) #26	INTS15 (ENSTTRG00000005003) #27	ZNF316 (ENSTTRG00000005005) #29	ZNF12 (ENSTTRG00000005007) #30
Odontoceti_b	ANCESTRAL SPECIES	3	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000154277.a.b.b.m.a.a.b	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00940000154509	ENSGT00390000014156 #20	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT00940000154303.C ##30	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b.u #36	ENSGT00950000182960.a.a.a.a.b.rb #37	ENSGT00390000015109
Monodontidae	ANCESTRAL SPECIES	1	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000154277.a.b.b.m.a.a.b	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b.u #36	ENSGT00950000182960.a.a.a.a.b.rb #37	ENSGT00390000015109	ENSGT00940000157099
Narwhal	MODERN SPECIES	299	TECPR1 (ENSMMNG00015003675) #8	BHLHA15 (ENSMMNG00015003745) #9	LMTK2 (ENSMMNG00015003763) #10	ENSMMNG00015003789 #11	ENSMMNG00015003818 #12	ENSMMNG00015003873 #13	ENSMMNG00015003915	PMS2 (ENSMMNG00015003939) #14	AIMP2 (ENSMMNG00015003978) #15	EIF2AK1 (ENSMMNG00015004004) #17	USP42 (ENSMMNG00015004036) #18	CYTH3 (ENSMMNG00015004066) #19	ENSMMNG00015004084	FAM220A (ENSMMNG00015004094) #20	ENSMMNG00015004103	RAC1 (ENSMMNG00015004118) #22	DAGLB (ENSMMNG00015004155) #23	KDELR2 (ENSMMNG00015004183) #24	GRID2IP (ENSMMNG00015004237) #25	ZDHHC4 (ENSMMNG00015004329) #26	INTS15 (ENSMMNG00015004351) #27	ZNF853 (ENSMMNG00015004374) #28	ZNF316 (ENSMMNG00015004386) #29	ENSMMNG00015004399	ZNF12 (ENSMMNG00015004410) #30	RBAK (ENSMMNG00015004421) #33	RNF216 (ENSMMNG00015004436) #35	FSCN1 (ENSMMNG00015004457) #36	ACTB (ENSMMNG00015004465) #37	FBXL18 (ENSMMNG00015004476)	TNRC18 (ENSMMNG00015000119)
Beluga whale	MODERN SPECIES	48	TECPR1 (ENSDLEG00000020413) #8	BHLHA15 (ENSDLEG00000020448) #9	LMTK2 (ENSDLEG00000020452) #10	ENSDLEG00000020471 #11	ENSDLEG00000020475 #12	ENSDLEG00000020481	ENSDLEG00000020484	PMS2 (ENSDLEG00000020496) #14	AIMP2 (ENSDLEG00000020551) #15	EIF2AK1 (ENSDLEG00000020556) #17	USP42 (ENSDLEG00000020630) #18	CYTH3 (ENSDLEG00000020671) #19	RPL22L1 (ENSDLEG00000020716)	FAM220A (ENSDLEG00000020719) #20	ENSDLEG00000020721	RAC1 (ENSDLEG00000020724) #22	DAGLB (ENSDLEG00000020750) #23	KDELR2 (ENSDLEG00000020768) #24	GRID2IP (ENSDLEG00000020777) #25	ZDHHC4 (ENSDLEG00000020816) #26	CUNH7orf26 (ENSDLEG00000020822) #27	ZNF316 (ENSDLEG00000020834) #29	ENSDLEG00000020842	ZNF12 (ENSDLEG00000020849) #30	ENSDLEG00000020858 #31	RBAK (ENSDLEG00000020874) #33	ENSDLEG00000020890	ENSDLEG00000020897 ##30	RNF216 (ENSDLEG00000020911) #35	FSCN1 (ENSDLEG00000020922) #36	ACTB (ENSDLEG00000020930) #37
Vaquita	MODERN SPECIES	6	BHLHA15 (ENSPSNG00000012595) #9	LMTK2 (ENSPSNG00000012631) #10	ENSPSNG00000012777 #11	ENSPSNG00000012850 #12	ENSPSNG00000013097 #13	ENSPSNG00000013383	PMS2 (ENSPSNG00000013449) #14	AIMP2 (ENSPSNG00000013573) #15	EIF2AK1 (ENSPSNG00000013745) #17	ENSPSNG00000013966	USP42 (ENSPSNG00000013999) #18	CYTH3 (ENSPSNG00000014047) #19	ENSPSNG00000014115	FAM220A (ENSPSNG00000014179) #20	ENSPSNG00000014218	RAC1 (ENSPSNG00000014278) #22	DAGLB (ENSPSNG00000014394) #23	ENSPSNG00000014592	KDELR2 (ENSPSNG00000014657) #24	GRID2IP (ENSPSNG00000014825) #25	ZDHHC4 (ENSPSNG00000015850) #26	INTS15 (ENSPSNG00000015900) #27	ZNF853 (ENSPSNG00000015959) #28	ZNF316 (ENSPSNG00000016002) #29	ZNF12 (ENSPSNG00000016057) #30	ENSPSNG00000016093 #31	ENSPSNG00000016180 #31	RBAK (ENSPSNG00000016251) #33	ENSPSNG00000016310	ENSPSNG00000016330 ##30	RNF216 (ENSPSNG00000016427) #35
Blue whale	MODERN SPECIES	6	TECPR1 (ENSBMSG00010015935) #8	BHLHA15 (ENSBMSG00010015945) #9	LMTK2 (ENSBMSG00010015958) #10	ENSBMSG00010015991 #11	ENSBMSG00010016031 #12	PMS2 (ENSBMSG00010016204) #14	ENSBMSG00010016495	AIMP2 (ENSBMSG00010016522) #15	EIF2AK1 (ENSBMSG00010016567) #17	ANKRD61 (ENSBMSG00010016589) #16	ENSBMSG00010016626 #18	CYTH3 (ENSBMSG00010016657) #19	FAM220A (ENSBMSG00010016767) #20	ENSBMSG00010016778	ENSBMSG00010016792	RAC1 (ENSBMSG00010016821) #22	DAGLB (ENSBMSG00010016888) #23	KDELR2 (ENSBMSG00010016947) #24	GRID2IP (ENSBMSG00010017008) #25	ZDHHC4 (ENSBMSG00010017231) #26	INTS15 (ENSBMSG00010017272) #27	ZNF853 (ENSBMSG00010017356) #28	ZNF316 (ENSBMSG00010017370) #29	ENSBMSG00010017391	ENSBMSG00010017413 #30	ENSBMSG00010017442 #31	RBAK (ENSBMSG00010017485) #33	ENSBMSG00010017515 ##30	RNF216 (ENSBMSG00010017535) #35	ENSBMSG00010017603 #36	ENSBMSG00010017637 #37
Pecora	ANCESTRAL SPECIES	10	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000004552.c.a	ENSGT00390000014156 #20	ENSGT00960000187139	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b #34	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36	ENSGT00950000182960.a.a.a.a.b.rb #37	ENSGT00390000015109
Percora_a	ANCESTRAL SPECIES	9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014547.c.l	ENSGT00390000004552.c.a	ENSGT00390000014156 #20	ENSGT00960000187139	ENSGT00390000014547.c.k	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b #34	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36	ENSGT00950000182960.a.a.a.a.b.rb #37	ENSGT00390000015109
Siberian musk deer	MODERN SPECIES	1198	LPIN3 (ENSMMSG00000021376)	EMILIN3 (ENSMMSG00000021335)	CHD6 (ENSMMSG00000021276)	PTPRT (ENSMMSG00000020333)	SRSF6 (ENSMMSG00000020249)	L3MBTL1 (ENSMMSG00000020153)	SGK2 (ENSMMSG00000020060)	IFT52 (ENSMMSG00000019966)	MYBL2 (ENSMMSG00000019605)	GTSF1L (ENSMMSG00000019571)	ENSMMSG00000019561	TOX2 (ENSMMSG00000019474)	JPH2 (ENSMMSG00000019438)	OSER1 (ENSMMSG00000019399)	GDAP1L1 (ENSMMSG00000019250)	ENSMMSG00000019217 #22	FITM2 (ENSMMSG00000019203)	R3HDML (ENSMMSG00000019173)	HNF4A (ENSMMSG00000018701)	TTPAL (ENSMMSG00000018623)	SERINC3 (ENSMMSG00000018583)	ENSMMSG00000018568	ADA (ENSMMSG00000018511)	CCN5 (ENSMMSG00000018462)	KCNK15 (ENSMMSG00000018432)	RIMS4 (ENSMMSG00000018389)	YWHAB (ENSMMSG00000018362)	PABPC1L (ENSMMSG00000018315)	TOMM34 (ENSMMSG00000018270)	STK4 (ENSMMSG00000018196)	KCNS1 (ENSMMSG00000018164)
Bovidae	ANCESTRAL SPECIES	11	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000004552.c.a	ENSGT00390000014156 #20	ENSGT00960000187139	ENSGT00390000014547.c.k	ENSGT00390000014547.c.l	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b #34	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36	ENSGT00950000182960.a.a.a.a.b.rb #37	ENSGT00390000015109
Caprinae	ANCESTRAL SPECIES	7	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000004552.c.a	ENSGT00390000014156 #20	ENSGT00390000014547.c.k.b	ENSGT00390000014547.c.l	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b #34	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36	ENSGT00950000182960.a.a.a.a.b.rb #37	ENSGT00390000015109
Rambouillet Sheep	MODERN SPECIES	16	BRI3 (ENSOARG00020023331) #7	TECPR1 (ENSOARG00020023364) #8	BHLHA15 (ENSOARG00020023426) #9	ENSOARG00020023523 #11	ENSOARG00020023544 #12	ENSOARG00020023637 #13	PMS2 (ENSOARG00020023689) #14	AIMP2 (ENSOARG00020023890) #15	EIF2AK1 (ENSOARG00020023922) #17	ANKRD61 (ENSOARG00020023934) #16	ENSOARG00020023952 #31	CYTH3 (ENSOARG00020023985) #19	ENSOARG00020024042	ENSOARG00020024050 #20	ENSOARG00020024065	RAC1 (ENSOARG00020006453) #22	DAGLB (ENSOARG00020006576) #23	KDELR2 (ENSOARG00020006875) #24	GRID2IP (ENSOARG00020006999) #25	ZDHHC4 (ENSOARG00020007779) #26	INTS15 (ENSOARG00020007817) #27	ZNF853 (ENSOARG00020007948) #28	ZNF316 (ENSOARG00020007995) #29	ZNF12 (ENSOARG00020008082) #30	ENSOARG00020008271 #31	RBAK (ENSOARG00020008438) #33	ENSOARG00020008480 #34	RNF216 (ENSOARG00020008508) #35	FSCN1 (ENSOARG00020008659) #36	ACTB (ENSOARG00020008714) #37	FBXL18 (ENSOARG00020008770)
Goat	MODERN SPECIES	17	BRI3 (ENSCHIG00000005545) #7	TECPR1 (ENSCHIG00000025300) #8	BHLHA15 (ENSCHIG00000008225) #9	LMTK2 (ENSCHIG00000023995) #10	ENSCHIG00000026637 #11	ENSCHIG00000016566 #12	ENSCHIG00000021579 #13	PMS2 (ENSCHIG00000017062) #14	AIMP2 (ENSCHIG00000014822) #15	EIF2AK1 (ENSCHIG00000014254) #17	ANKRD61 (ENSCHIG00000014423) #16	USP42 (ENSCHIG00000017502) #18	CYTH3 (ENSCHIG00000025012) #19	ENSCHIG00000013157	ENSCHIG00000012626	RAC1 (ENSCHIG00000023897) #22	DAGLB (ENSCHIG00000025751) #23	KDELR2 (ENSCHIG00000016693) #24	GRID2IP (ENSCHIG00000019697) #25	ZDHHC4 (ENSCHIG00000011078) #26	INTS15 (ENSCHIG00000023779) #27	ZNF853 (ENSCHIG00000026318) #28	ZNF316 (ENSCHIG00000024346) #29	ZNF12 (ENSCHIG00000011026) #30	ENSCHIG00000019239 #31	RBAK (ENSCHIG00000026024) #33	ENSCHIG00000009168 #34	RNF216 (ENSCHIG00000020520) #35	FSCN1 (ENSCHIG00000013676) #36	ACTB (ENSCHIG00000013316) #37	FBXL18 (ENSCHIG00000001815)
Bovinae	ANCESTRAL SPECIES	7	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000004552.c.a	ENSGT00390000014547.c.k	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT00940000162678.c.b	ENSGT00390000006264.d	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36	ENSGT00740000116898
American bison	MODERN SPECIES	3140	BAIAP2L1 (ENSBBBG00000010154)	ENSBBBG00000001713	BRI3 (ENSBBBG00000010143) #7	BHLHA15 (ENSBBBG00000010137) #9	LMTK2 (ENSBBBG00000010132) #10	ENSBBBG00000010109 #11	ENSBBBG00000010103 #12	ENSBBBG00000006928 #13	PMS2 (ENSBBBG00000001701) #14	AIMP2 (ENSBBBG00000010040) #15	EIF2AK1 (ENSBBBG00000010025) #17	ANKRD61 (ENSBBBG00000010019) #16	ENSBBBG00000010015 #18	CYTH3 (ENSBBBG00000010008) #19	ENSBBBG00000009985	RAC1 (ENSBBBG00000008427) #22	DAGLB (ENSBBBG00000001669) #23	KDELR2 (ENSBBBG00000001663) #24	GRID2IP (ENSBBBG00000009936) #25	ZDHHC4 (ENSBBBG00000009898) #26	INTS15 (ENSBBBG00000009885) #27	ENSBBBG00000009880 #29	ZNF12 (ENSBBBG00000006926) #30	ENSBBBG00000009865 #31	RBAK (ENSBBBG00000009857) #33	ENSBBBG00000009853	RNF216 (ENSBBBG00000009848) #35	FSCN1 (ENSBBBG00000009842) #36	ENSBBBG00000009839	ACTB (ENSBBBG00000009838) #37	FBXL18 (ENSBBBG00000009835)
Bos	ANCESTRAL SPECIES	9	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000004552.c.a	ENSGT00390000014547.c.k	ENSGT00960000187139	ENSGT00390000014547.c.l	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b #34	ENSGT00940000162678.c.b	ENSGT00960000191467	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36
Bos_b	ANCESTRAL SPECIES	6	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000004552.c.a	ENSGT00390000014547.c.k	ENSGT00960000187139	ENSGT00390000014547.c.l	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b #34	ENSGT00940000162678.c.b	ENSGT00960000191467	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36
Hybrid Bos Indicus	MODERN SPECIES	17	BHLHA15 (ENSBIXG00005015363) #9	BAIAP2L1 (ENSBIXG00005015423)	LMTK2 (ENSBIXG00005002294) #10	ENSBIXG00005015523 #11	ENSBIXG00005015615 #12	ENSBIXG00005015885 #13	PMS2 (ENSBIXG00005002516) #14	AIMP2 (ENSBIXG00005015986) #15	ANKRD61 (ENSBIXG00005016000) #16	EIF2AK1 (ENSBIXG00005016011) #17	ENSBIXG00005016025	USP42 (ENSBIXG00005016049) #18	CYTH3 (ENSBIXG00005016102) #19	ENSBIXG00005007461	ENSBIXG00005016165	RAC1 (ENSBIXG00005016208) #22	DAGLB (ENSBIXG00005016269) #23	KDELR2 (ENSBIXG00005016301) #24	GRID2IP (ENSBIXG00005016633) #25	ZDHHC4 (ENSBIXG00005016695) #26	INTS15 (ENSBIXG00005016776) #27	ZNF853 (ENSBIXG00005016791) #28	ZNF316 (ENSBIXG00005005424) #29	ZNF12 (ENSBIXG00005016846) #30	ENSBIXG00005002730 #31	RBAK (ENSBIXG00005016874) #33	ENSBIXG00005016887	ENSBIXG00005016906	RNF216 (ENSBIXG00005016940) #35	FSCN1 (ENSBIXG00005016968) #36	ACTB (ENSBIXG00005017151) #37
Cow	MODERN SPECIES	17	TECPR1 (ENSBTAG00000051678) #8	BHLHA15 (ENSBTAG00000046010) #9	LMTK2 (ENSBTAG00000004135) #10	ENSBTAG00000046943 #11	CCZ1 (ENSBTAG00000003288) #12	RSPH10B (ENSBTAG00000005908) #13	PMS2 (ENSBTAG00000007364) #14	AIMP2 (ENSBTAG00000007367) #15	EIF2AK1 (ENSBTAG00000007370) #17	ANKRD61 (ENSBTAG00000007372) #16	USP42 (ENSBTAG00000000725) #18	CYTH3 (ENSBTAG00000007384) #19	ENSBTAG00000046517	ENSBTAG00000051511	ENSBTAG00000053719	RAC1 (ENSBTAG00000053390) #22	DAGLB (ENSBTAG00000009236) #23	KDELR2 (ENSBTAG00000009237) #24	GRID2IP (ENSBTAG00000003308) #25	ZDHHC4 (ENSBTAG00000009547) #26	INTS15 (ENSBTAG00000021248) #27	ZNF853 (ENSBTAG00000053996) #28	ZNF316 (ENSBTAG00000003953) #29	ZNF12 (ENSBTAG00000039782) #30	ENSBTAG00000040014 #31	RBAK (ENSBTAG00000010291) #33	OR10AH1 (ENSBTAG00000005600) #34	ENSBTAG00000048231	RNF216 (ENSBTAG00000017175) #35	FSCN1 (ENSBTAG00000003191) #36	ENSBTAG00000047781
Bos_a	ANCESTRAL SPECIES	35	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000004552.c.a	ENSGT00390000014547.c.k	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT00940000162678.c.b	ENSGT00960000191467	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36	ENSGT00740000116898	ENSGT00950000182960.a.a.a.a.b.rb #37
Domestic yak	MODERN SPECIES	18	BHLHA15 (ENSBGRG00000025237) #9	LMTK2 (ENSBGRG00000025270) #10	ENSBGRG00000025381 #11	ENSBGRG00000025431 #12	ENSBGRG00000025625 #13	PMS2 (ENSBGRG00000025668) #14	AIMP2 (ENSBGRG00000025683) #15	EIF2AK1 (ENSBGRG00000025699) #17	ANKRD61 (ENSBGRG00000025716) #16	USP42 (ENSBGRG00000025739) #18	ENSBGRG00000025761	CYTH3 (ENSBGRG00000025775) #19	ENSBGRG00000025810	ENSBGRG00000025813	ENSBGRG00000025818	RAC1 (ENSBGRG00000025825) #22	DAGLB (ENSBGRG00000025849) #23	KDELR2 (ENSBGRG00000025874) #24	GRID2IP (ENSBGRG00000025896) #25	INTS15 (ENSBGRG00000025912) #27	ENSBGRG00000016685 #29	ZNF316 (ENSBGRG00000016721) #29	ZNF12 (ENSBGRG00000016763) #30	ENSBGRG00000016800 #31	RBAK (ENSBGRG00000016858) #33	ENSBGRG00000017510	ENSBGRG00000017557	RNF216 (ENSBGRG00000017667) #35	FSCN1 (ENSBGRG00000017874) #36	ENSBGRG00000017951	ACTB (ENSBGRG00000017982) #37
Wild yak	MODERN SPECIES	1481	BHLHA15 (ENSBMUG00000014568) #9	LMTK2 (ENSBMUG00000014553) #10	ENSBMUG00000014529 #11	ENSBMUG00000014511	ENSBMUG00000014499 #12	ENSBMUG00000014408 #13	PMS2 (ENSBMUG00000014299) #14	AIMP2 (ENSBMUG00000014263) #15	ANKRD61 (ENSBMUG00000014242) #16	EIF2AK1 (ENSBMUG00000014219) #17	USP42 (ENSBMUG00000014180) #18	CYTH3 (ENSBMUG00000014119) #19	ENSBMUG00000014102	ENSBMUG00000014095	ENSBMUG00000014076	RAC1 (ENSBMUG00000014051) #22	DAGLB (ENSBMUG00000014034) #23	KDELR2 (ENSBMUG00000014010) #24	GRID2IP (ENSBMUG00000013977) #25	ZDHHC4 (ENSBMUG00000013920) #26	INTS15 (ENSBMUG00000013893) #27	ENSBMUG00000013860 #29	ZNF12 (ENSBMUG00000013839) #30	ENSBMUG00000013816 #31	RBAK (ENSBMUG00000013804) #33
Yarkand deer	MODERN SPECIES	1	BHLHA15 (ENSCHYG00000017555) #9	LMTK2 (ENSCHYG00000017591) #10	ENSCHYG00000017762 #11	ENSCHYG00000017835 #12	ENSCHYG00000018095 #13	PMS2 (ENSCHYG00000018507) #14	AIMP2 (ENSCHYG00000018933) #15	EIF2AK1 (ENSCHYG00000019050) #17	ANKRD61 (ENSCHYG00000019492) #16	USP42 (ENSCHYG00000019582) #18	CYTH3 (ENSCHYG00000019827) #19	ENSCHYG00000020209	ENSCHYG00000020241 #20	ENSCHYG00000020267	ENSCHYG00000020298	ENSCHYG00000020349 #22	DAGLB (ENSCHYG00000020528) #23	KDELR2 (ENSCHYG00000020750) #24	GRID2IP (ENSCHYG00000020878) #25	ZDHHC4 (ENSCHYG00000021674) #26	INTS15 (ENSCHYG00000021723) #27	ZNF316 (ENSCHYG00000021888) #29	ZNF12 (ENSCHYG00000021930) #30	RBAK (ENSCHYG00000021999) #33	ENSCHYG00000022030 ##30	ENSCHYG00000022076	RNF216 (ENSCHYG00000022128) #35	FSCN1 (ENSCHYG00000022267) #36	ENSCHYG00000022350	FBXL18 (ENSCHYG00000022373)	TNRC18 (ENSCHYG00000022469)
Camelidae	ANCESTRAL SPECIES	24	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31
Arabian camel	MODERN SPECIES	9	BRI3 (ENSCDRG00005013667) #7	TECPR1 (ENSCDRG00005013716) #8	LMTK2 (ENSCDRG00005013925) #10	ENSCDRG00005014012 #11	ENSCDRG00005014080 #12	ENSCDRG00005014255 #13	PMS2 (ENSCDRG00005014320) #14	AIMP2 (ENSCDRG00005014622) #15	EIF2AK1 (ENSCDRG00005014748) #17	ANKRD61 (ENSCDRG00005014835) #16	USP42 (ENSCDRG00005014885) #18	CYTH3 (ENSCDRG00005015343) #19	ENSCDRG00005015633 #20	ENSCDRG00005015668	ENSCDRG00005015699	RAC1 (ENSCDRG00005015728) #22	DAGLB (ENSCDRG00005015756) #23	KDELR2 (ENSCDRG00005015850) #24	GRID2IP (ENSCDRG00005015967) #25	ZDHHC4 (ENSCDRG00005016662) #26	INTS15 (ENSCDRG00005016697) #27	ENSCDRG00005017008 #29	ENSCDRG00005017157	ZNF12 (ENSCDRG00005017904) #30	ENSCDRG00005018000 #31	RBAK (ENSCDRG00005018032) #33	ENSCDRG00005018077	RNF216 (ENSCDRG00005018101) #35	FSCN1 (ENSCDRG00005018200) #36	ACTB (ENSCDRG00005018212) #37	FBXL18 (ENSCDRG00005018252)
Alpaca	MODERN SPECIES	2217																ENSVPAG00000011395 #22	ENSVPAG00000011397 #23	ENSVPAG00000011398 #24
Laurasiatheria_b	ANCESTRAL SPECIES	12	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000170143	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00960000187139	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b #34	ENSGT00940000154303.C ##30	ENSGT00510000048032 #35
Laurasiatheria_c	ANCESTRAL SPECIES	12	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36	ENSGT00950000182960.a.a.a.a.b.rb #37	ENSGT00390000015109
Chiroptera	ANCESTRAL SPECIES	51	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154303.A.b #33	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36	ENSGT00950000182960.a.a.a.a.b.rb #37	ENSGT00390000015109	ENSGT00940000157099	ENSGT00950000182898.a.b
Microchiroptera	ANCESTRAL SPECIES	48	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154303.A.b #33	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36	ENSGT00950000182960.a.a.a.a.b.rb #37	ENSGT00390000015109	ENSGT00940000157099	ENSGT00950000182898.a.b
Greater horseshoe bat	MODERN SPECIES	16	TECPR1 (ENSRFEG00010008694) #8	BHLHA15 (ENSRFEG00010008759) #9	LMTK2 (ENSRFEG00010008774) #10	ENSRFEG00010008833 #11	ENSRFEG00010008890 #12	ENSRFEG00010009090 #13	PMS2 (ENSRFEG00010009339) #14	AIMP2 (ENSRFEG00010009618) #15	ANKRD61 (ENSRFEG00010009693) #16	ENSRFEG00010009735	USP42 (ENSRFEG00010009774) #18	CYTH3 (ENSRFEG00010009801) #19	FAM220A (ENSRFEG00010009862) #20	ENSRFEG00010009875	ENSRFEG00010009899	RAC1 (ENSRFEG00010009950) #22	DAGLB (ENSRFEG00010009989) #23	GRID2IP (ENSRFEG00010010184) #25	ENSRFEG00010011143	ZDHHC4 (ENSRFEG00010011173) #26	INTS15 (ENSRFEG00010011207) #27	ZNF853 (ENSRFEG00010011438) #28	ZNF316 (ENSRFEG00010011513) #29	RBAK (ENSRFEG00010011587) #33	ENSRFEG00010011657 #30	RNF216 (ENSRFEG00010011679) #35	FSCN1 (ENSRFEG00010011743) #36	ACTB (ENSRFEG00010011816) #37	FBXL18 (ENSRFEG00010011882)	TNRC18 (ENSRFEG00010012024)	SLC29A4 (ENSRFEG00010012223)
Microbat	MODERN SPECIES	1145	NPTX2 (ENSMLUG00000030756)	BAIAP2L1 (ENSMLUG00000005124)	BRI3 (ENSMLUG00000029697) #7	TECPR1 (ENSMLUG00000009865) #8	BHLHA15 (ENSMLUG00000009476) #9	LMTK2 (ENSMLUG00000009437) #10	ENSMLUG00000009432 #11	ENSMLUG00000025192 #12	ENSMLUG00000009111 #13	PMS2 (ENSMLUG00000003795) #14	AIMP2 (ENSMLUG00000003807) #15	EIF2AK1 (ENSMLUG00000003813) #17	ANKRD61 (ENSMLUG00000003826) #16	USP42 (ENSMLUG00000003835) #18	CYTH3 (ENSMLUG00000003845) #19	RAC1 (ENSMLUG00000009701) #22	DAGLB (ENSMLUG00000009722) #23	KDELR2 (ENSMLUG00000009766) #24	ENSMLUG00000017011 #26	INTS15 (ENSMLUG00000012486) #27	ENSMLUG00000005596 #30	RBAK (ENSMLUG00000004409) #33	RNF216 (ENSMLUG00000015738) #35
Equus	ANCESTRAL SPECIES	22	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547.c	ENSGT00940000163089.b	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT00940000162441.d	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36	ENSGT00950000182960.a.a.a.a.b.rb #37
Donkey	MODERN SPECIES	5	TECPR1 (ENSEASG00005000888) #8	BHLHA15 (ENSEASG00005000829) #9	LMTK2 (ENSEASG00005000819) #10	ENSEASG00005000807 #11	ENSEASG00005000796 #12	ENSEASG00005000768 #13	PMS2 (ENSEASG00005000763) #14	AIMP2 (ENSEASG00005000759) #15	EIF2AK1 (ENSEASG00005000749) #17	ANKRD61 (ENSEASG00005000753) #16	USP42 (ENSEASG00005000742) #18	CYTH3 (ENSEASG00005000673) #19	FAM220A (ENSEASG00005035343) #20	ENSEASG00005000661	ENSEASG00005000651	RAC1 (ENSEASG00005035702) #22	DAGLB (ENSEASG00005000637) #23	KDELR2 (ENSEASG00005000632) #24	GRID2IP (ENSEASG00005000529) #25	ZDHHC4 (ENSEASG00005000494) #26	INTS15 (ENSEASG00005000468) #27	ZNF853 (ENSEASG00005036604) #28	ZNF316 (ENSEASG00005032381) #29	ENSEASG00005032120	ENSEASG00005000421 #30	ENSEASG00005037577 #31	ENSEASG00005028623 #33	ENSEASG00005000386 #31	ENSEASG00005000366	ENSEASG00005000044 #35	FSCN1 (ENSEASG00005000015) #36
Carnivora	ANCESTRAL SPECIES	12	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000170143	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00960000187139	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b #34	ENSGT00940000154303.C ##30	ENSGT00510000048032 #35
Felidae	ANCESTRAL SPECIES	19	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000170143	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT00940000154303.C ##30	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36	ENSGT00950000182960.a.a.a.a.b.rb #37
Panthera	ANCESTRAL SPECIES	27	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000170143	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36	ENSGT00950000182960.a.a.a.a.b.rb #37	ENSGT00390000015109
Panthera_a	ANCESTRAL SPECIES	27	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36	ENSGT00950000182960.a.a.a.a.b.rb #37	ENSGT00390000015109
leopard	MODERN SPECIES	91	BRI3 (ENSPPRG00000022966) #7	TECPR1 (ENSPPRG00000000441) #8	BHLHA15 (ENSPPRG00000022063) #9	LMTK2 (ENSPPRG00000001646) #10	ENSPPRG00000001866 #11	ENSPPRG00000003334 #12	ENSPPRG00000004186 #13	PMS2 (ENSPPRG00000005984) #14	ENSPPRG00000006879 #15	ANKRD61 (ENSPPRG00000007144) #16	EIF2AK1 (ENSPPRG00000008945) #17	ENSPPRG00000009316 #18	CYTH3 (ENSPPRG00000010324) #19	FAM220A (ENSPPRG00000010389) #20	ENSPPRG00000010644	RAC1 (ENSPPRG00000011136) #22	DAGLB (ENSPPRG00000013174) #23	KDELR2 (ENSPPRG00000013747) #24	GRID2IP (ENSPPRG00000023803) #25	ZDHHC4 (ENSPPRG00000022766) #26	INTS15 (ENSPPRG00000000233) #27	ZNF853 (ENSPPRG00000000332) #28	ZNF316 (ENSPPRG00000000894) #29	ZNF12 (ENSPPRG00000001734) #30	ENSPPRG00000001934 #31	RBAK (ENSPPRG00000002149) #33	RNF216 (ENSPPRG00000003482) #35	FSCN1 (ENSPPRG00000003969) #36	ACTB (ENSPPRG00000004533) #37	FBXL18 (ENSPPRG00000004952)	TNRC18 (ENSPPRG00000009594)
lion	MODERN SPECIES	16	BHLHA15 (ENSPLOG00000012274) #9	LMTK2 (ENSPLOG00000012296) #10	ENSPLOG00000012444 #11	ENSPLOG00000012512 #12	ENSPLOG00000012710 #13	PMS2 (ENSPLOG00000012941) #14	AIMP2 (ENSPLOG00000013418) #15	EIF2AK1 (ENSPLOG00000013489) #17	ANKRD61 (ENSPLOG00000013627) #16	USP42 (ENSPLOG00000013674) #18	CYTH3 (ENSPLOG00000013721) #19	ENSPLOG00000013780	FAM220A (ENSPLOG00000013819) #20	ENSPLOG00000013840	ENSPLOG00000013878	RAC1 (ENSPLOG00000013940) #22	DAGLB (ENSPLOG00000014032) #23	KDELR2 (ENSPLOG00000014105) #24	GRID2IP (ENSPLOG00000014225) #25	ZDHHC4 (ENSPLOG00000014884) #26	INTS15 (ENSPLOG00000014931) #27	ZNF853 (ENSPLOG00000015012) #28	ZNF316 (ENSPLOG00000015027) #29	ENSPLOG00000015076	ZNF12 (ENSPLOG00000015122) #30	ENSPLOG00000015268 #31	RBAK (ENSPLOG00000015338) #33	RNF216 (ENSPLOG00000015392) #35	FSCN1 (ENSPLOG00000015460) #36	ACTB (ENSPLOG00000015512) #37	FBXL18 (ENSPLOG00000015550)
Tiger	MODERN SPECIES	155	TMEM130 (ENSPTIG00000017143)	NPTX2 (ENSPTIG00000019675)	BAIAP2L1 (ENSPTIG00000020036)	TECPR1 (ENSPTIG00000005029) #8	LMTK2 (ENSPTIG00000008096) #10	ENSPTIG00000009441 #11	ENSPTIG00000010995 #12	ENSPTIG00000013267	ENSPTIG00000014426 #13	PMS2 (ENSPTIG00000015503) #14	AIMP2 (ENSPTIG00000018361) #15	EIF2AK1 (ENSPTIG00000019095) #17	ANKRD61 (ENSPTIG00000021190) #16	ENSPTIG00000021548 #18	FAM220A (ENSPTIG00000007251) #20	RAC1 (ENSPTIG00000002902) #22	DAGLB (ENSPTIG00000007110) #23	KDELR2 (ENSPTIG00000009649) #24	GRID2IP (ENSPTIG00000010978) #25	ZDHHC4 (ENSPTIG00000017464) #26	INTS15 (ENSPTIG00000017840) #27	ZNF12 (ENSPTIG00000019096) #30	ENSPTIG00000020644 #31	RBAK (ENSPTIG00000020755) #33	RNF216 (ENSPTIG00000021179) #35	ENSPTIG00000021755 #36	ENSPTIG00000021797 ##37	ENSPTIG00000021870	ENSPTIG00000021940	WIPI2 (ENSPTIG00000021994)	ENSPTIG00000000233
Cat	MODERN SPECIES	247	BAIAP2L1 (ENSFCAG00000000317)	BRI3 (ENSFCAG00000045373) #7	TECPR1 (ENSFCAG00000000316) #8	LMTK2 (ENSFCAG00000030546) #10	OCM (ENSFCAG00000000313) #11	ENSFCAG00000031938 #12	ENSFCAG00000018906 #13	PMS2 (ENSFCAG00000008459) #14	AIMP2 (ENSFCAG00000022896) #15	ANKRD61 (ENSFCAG00000027842) #16	EIF2AK1 (ENSFCAG00000008465) #17	USP42 (ENSFCAG00000048499) #18	CYTH3 (ENSFCAG00000024088) #19	FAM220A (ENSFCAG00000053347) #20	ENSFCAG00000042468	RAC1 (ENSFCAG00000011361) #22	DAGLB (ENSFCAG00000011362) #23	KDELR2 (ENSFCAG00000031430) #24	GRID2IP (ENSFCAG00000007510) #25	ZDHHC4 (ENSFCAG00000023338) #26	INTS15 (ENSFCAG00000008338) #27	ZNF853 (ENSFCAG00000040667) #28	ZNF316 (ENSFCAG00000043529) #29	ENSFCAG00000051237	ZNF12 (ENSFCAG00000008342) #30	ENSFCAG00000001821 #31	RBAK (ENSFCAG00000037840) #33	ENSFCAG00000048020 ##30	RNF216 (ENSFCAG00000013381) #35	FSCN1 (ENSFCAG00000009023) #36	ACTB (ENSFCAG00000006788) #37
Caniformia	ANCESTRAL SPECIES	8	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00960000187139	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b #34	ENSGT00940000154303.C ##30	ENSGT00510000048032 #35
Caniformia_b	ANCESTRAL SPECIES	7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00840000130004 #16	ENSGT00940000157605 #17	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b #34	ENSGT00940000154303.C ##30	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36
Ursidae	ANCESTRAL SPECIES	3	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00840000130004 #16	ENSGT00940000157605 #17	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b #34	ENSGT00950000182890.A.a.b.b	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36
Ursus	ANCESTRAL SPECIES	32	ENSGT01060000248591.a.a.a.a	ENSGT00390000006548.b.k.j.b	ENSGT00940000153560.b.b.a	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00390000014156 #20	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT00950000182890.A.a.b.b	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36	ENSGT00950000182960.a.a.a.b ##37
Polar bear	MODERN SPECIES	212	ENSUMAG00000009130	BAIAP2L1 (ENSUMAG00000009124)	BRI3 (ENSUMAG00000009119) #7	TECPR1 (ENSUMAG00000009072) #8	LMTK2 (ENSUMAG00000009057) #10	ENSUMAG00000009054 #11	ENSUMAG00000009052 #12	ENSUMAG00000009008 #13	PMS2 (ENSUMAG00000008992) #14	AIMP2 (ENSUMAG00000008984) #15	ANKRD61 (ENSUMAG00000008978) #16	EIF2AK1 (ENSUMAG00000008793) #17	ENSUMAG00000008783 #18	ENSUMAG00000008780	ENSUMAG00000008775 #20	RAC1 (ENSUMAG00000008742) #22	DAGLB (ENSUMAG00000008562) #23	KDELR2 (ENSUMAG00000008508) #24	ZDHHC4 (ENSUMAG00000008503) #26	INTS15 (ENSUMAG00000008492) #27	ZNF12 (ENSUMAG00000008484) #30	ENSUMAG00000008479 #31	ENSUMAG00000008474	RBAK (ENSUMAG00000008468) #33	ENSUMAG00000008446	RNF216 (ENSUMAG00000008432) #35	ENSUMAG00000008422 #36	ENSUMAG00000007902 ##37	WIPI2 (ENSUMAG00000007655)	MMD2 (ENSUMAG00000007636)	PAPOLB (ENSUMAG00000007631)
American black bear	MODERN SPECIES	42																RAC1 (ENSUAMG00000023530) #22	DAGLB (ENSUAMG00000023532) #23	KDELR2 (ENSUAMG00000023534) #24	GRID2IP (ENSUAMG00000023537) #25	ZDHHC4 (ENSUAMG00000023548) #26	ENSUAMG00000023551	INTS15 (ENSUAMG00000023552) #27	ENSUAMG00000023557 #29	ENSUAMG00000023558 #29	ENSUAMG00000023559	ENSUAMG00000023581	ZNF12 (ENSUAMG00000023608) #30	ENSUAMG00000023609 #31	RBAK (ENSUAMG00000023610) #33	ENSUAMG00000023611	RNF216 (ENSUAMG00000023613) #35
Giant Panda	MODERN SPECIES	1	BRI3 (ENSAMEG00000025389) #7	TECPR1 (ENSAMEG00000008910) #8	ENSAMEG00000008945 #10	ENSAMEG00000008965 #11	ENSAMEG00000008970 #12	ENSAMEG00000009007 #13	PMS2 (ENSAMEG00000009032) #14	AIMP2 (ENSAMEG00000009065) #15	ANKRD61 (ENSAMEG00000025422) #16	EIF2AK1 (ENSAMEG00000009072) #17	USP42 (ENSAMEG00000006853) #18	CYTH3 (ENSAMEG00000006768) #19	FAM220A (ENSAMEG00000019181) #20	ENSAMEG00000025057	ENSAMEG00000023754	RAC1 (ENSAMEG00000006764) #22	DAGLB (ENSAMEG00000006734) #23	KDELR2 (ENSAMEG00000006722) #24	GRID2IP (ENSAMEG00000006715) #25	ZDHHC4 (ENSAMEG00000006702) #26	INTS15 (ENSAMEG00000006695) #27	ENSAMEG00000031401 #29	ENSAMEG00000024417	ENSAMEG00000006671 #31	ENSAMEG00000006680 #30	ENSAMEG00000006666 #33	ENSAMEG00000019172 #34	ENSAMEG00000007368 ##30	ENSAMEG00000006634 #35	FSCN1 (ENSAMEG00000006620) #36	FBXL18 (ENSAMEG00000006596)
Mustelinae	ANCESTRAL SPECIES	64	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00840000130004 #16	ENSGT00940000157605 #17	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b #34	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36	ENSGT00950000182960.a.a.a.a.b.rb #37	ENSGT00390000015109
Ferret	MODERN SPECIES	366	NPTX2 (ENSMPUG00000016559)	ENSMPUG00000016560	BAIAP2L1 (ENSMPUG00000016561)	BRI3 (ENSMPUG00000016562) #7	TECPR1 (ENSMPUG00000016564) #8	BHLHA15 (ENSMPUG00000020102) #9	LMTK2 (ENSMPUG00000016567) #10	ENSMPUG00000016568 #11	ENSMPUG00000016569 #12	ENSMPUG00000016571 #13	PMS2 (ENSMPUG00000016574) #14	AIMP2 (ENSMPUG00000016575) #15	EIF2AK1 (ENSMPUG00000016576) #17	USP42 (ENSMPUG00000016577) #18	CYTH3 (ENSMPUG00000016578) #19	RAC1 (ENSMPUG00000016579) #22	DAGLB (ENSMPUG00000016581) #23	KDELR2 (ENSMPUG00000016583) #24	GRID2IP (ENSMPUG00000016585) #25	ZDHHC4 (ENSMPUG00000016586) #26	INTS15 (ENSMPUG00000016589) #27	ENSMPUG00000016591	ZNF316 (ENSMPUG00000016592) #29	ENSMPUG00000016594	ZNF12 (ENSMPUG00000016596) #30	ENSMPUG00000016601 #31	RBAK (ENSMPUG00000016607) #33	ENSMPUG00000020103 #34	ENSMPUG00000016608	RNF216 (ENSMPUG00000016610) #35	FSCN1 (ENSMPUG00000016611) #36
American mink	MODERN SPECIES	113	TECPR1 (ENSNVIG00000006455) #8	BHLHA15 (ENSNVIG00000006444) #9	LMTK2 (ENSNVIG00000006430) #10	ENSNVIG00000006417 #11	ENSNVIG00000006396 #12	ENSNVIG00000006329 #13	PMS2 (ENSNVIG00000006302) #14	AIMP2 (ENSNVIG00000006284) #15	ANKRD61 (ENSNVIG00000006278) #16	EIF2AK1 (ENSNVIG00000006253) #17	ENSNVIG00000006235	USP42 (ENSNVIG00000006223) #18	CYTH3 (ENSNVIG00000006203) #19	ENSNVIG00000006191 #20	ENSNVIG00000006188	RAC1 (ENSNVIG00000006036) #22	DAGLB (ENSNVIG00000005999) #23	KDELR2 (ENSNVIG00000005984) #24	GRID2IP (ENSNVIG00000005909) #25	ZDHC4 (ENSNVIG00000005822) #26	INTS15 (ENSNVIG00000005787) #27	ZNF316 (ENSNVIG00000005744) #29	ENSNVIG00000005736	ZNF12 (ENSNVIG00000005705) #30	RBAK (ENSNVIG00000005690) #33	ENSNVIG00000005682	RNF216 (ENSNVIG00000005665) #35	FSCN1 (ENSNVIG00000005656) #36	ACTB (ENSNVIG00000005620) #37	FBXL18 (ENSNVIG00000005606)	TNRC18 (ENSNVIG00000005507)
Canidae	ANCESTRAL SPECIES	3	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00960000187139	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A.z #31	ENSGT00940000154173.A.y #31	ENSGT00940000154303.A.b #33	ENSGT00950000182890.A.a.b.b	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36
Canis_lupus	ANCESTRAL SPECIES	2	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A.y.a #31	ENSGT00940000154173.A.y.b #31	ENSGT00940000154303.A.b #33	ENSGT00990000207633	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36
Dog	DUPLICATION
Dog	MODERN SPECIES	32	GGPS1 (ENSCAFG00845003438)	ARID4B (ENSCAFG00845003468)	RBM34 (ENSCAFG00845003503)	TOMM20 (ENSCAFG00845003534)	IRF2BP2 (ENSCAFG00845003554)	TARBP1 (ENSCAFG00845003609)	ENSCAFG00845003725	SLC35F3 (ENSCAFG00845003804)	ENSCAFG00845003844	MAP3K21 (ENSCAFG00845003868)	PCNX2 (ENSCAFG00845003909)	ENSCAFG00845004013	MAP10 (ENSCAFG00845000217)	SIPA1L2 (ENSCAFG00845000316)	DISC1 (ENSCAFG00845000475)	ENSCAFG00845000495 #22	TSNAX (ENSCAFG00845000505)	EGLN1 (ENSCAFG00845000514)	SPRTN (ENSCAFG00845000572)	EXOC8 (ENSCAFG00845000604)	GNPAT (ENSCAFG00845000642)	C4H1orf131 (ENSCAFG00845000693)	TRIM67 (ENSCAFG00845000716)	FAM89A (ENSCAFG00845000764)	ARV1 (ENSCAFG00845000779)	TTC13 (ENSCAFG00845000829)	ENSCAFG00845000866	CAPN9 (ENSCAFG00845000946)	AGT (ENSCAFG00845001060)	COG2 (ENSCAFG00845001085)	PGBD5 (ENSCAFG00845001146)
Dog	MODERN SPECIES	34	BRI3 (ENSCAFG00845009124) #7	TECPR1 (ENSCAFG00845009230) #8	LMTK2 (ENSCAFG00845009531) #10	ENSCAFG00845009599	OCM2 (ENSCAFG00845009625) #11	ENSCAFG00845009703 #12	ENSCAFG00845009924 #13	PMS2 (ENSCAFG00845010093) #14	AIMP2 (ENSCAFG00845010261) #15	EIF2AK1 (ENSCAFG00845010328) #17	ANKRD61 (ENSCAFG00845010423) #16	USP42 (ENSCAFG00845010465) #18	CYTH3 (ENSCAFG00845010607) #19	FAM220A (ENSCAFG00845010882) #20	ENSCAFG00845010907	RAC1 (ENSCAFG00845010961) #22	DAGLB (ENSCAFG00845011183) #23	KDELR2 (ENSCAFG00845011781) #24	GRID2IP (ENSCAFG00845012466) #25	ZDHHC4 (ENSCAFG00845012594) #26	C6H7orf26 (ENSCAFG00845012647) #27	ZNF853 (ENSCAFG00845012765) #28	ZNF316 (ENSCAFG00845012808) #29	ENSCAFG00845012837	ENSCAFG00845012858 #33	ZNF12 (ENSCAFG00845012896) #30	ENSCAFG00845012927 #31	ENSCAFG00845012969 #31	ENSCAFG00845013016 #31	ENSCAFG00845013049 #31	ENSCAFG00845013157
Red fox	MODERN SPECIES	218	TECPR1 (ENSVVUG00000015112) #8	BHLHA15 (ENSVVUG00000015125) #9	LMTK2 (ENSVVUG00000015127) #10	OCM2 (ENSVVUG00000015131) #11	CCZ1 (ENSVVUG00000015134) #12	ENSVVUG00000015144 #13	PMS2 (ENSVVUG00000015191) #14	AIMP2 (ENSVVUG00000015196) #15	EIF2AK1 (ENSVVUG00000015198) #17	ANKRD61 (ENSVVUG00000015203) #16	USP42 (ENSVVUG00000015208) #18	CYTH3 (ENSVVUG00000015297) #19	FAM220A (ENSVVUG00000015524) #20	ENSVVUG00000015527	ENSVVUG00000015529	RAC1 (ENSVVUG00000015534) #22	DAGLB (ENSVVUG00000015550) #23	KDELR2 (ENSVVUG00000015560) #24	GRID2IP (ENSVVUG00000015575) #25	ZDHHC4 (ENSVVUG00000015647) #26	INTS15 (ENSVVUG00000015652) #27	ZNF853 (ENSVVUG00000015656) #28	ENSVVUG00000015662 #29	ENSVVUG00000015678 #29	ENSVVUG00000015680	ZNF12 (ENSVVUG00000015684) #30	ENSVVUG00000015697 #31
Eulipotyphla	ANCESTRAL SPECIES	1992																ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23
Common shrew	MODERN SPECIES	11847																RAC1 (ENSSARG00000014557) #22
Hedgehog	MODERN SPECIES	3343																RAC1 (ENSEEUG00000012554) #22	DAGLB (ENSEEUG00000012624) #23
Atlantogenata	ANCESTRAL SPECIES	21	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00950000184989	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000162728 #29	ENSGT00940000154303.A #33	ENSGT01050000244815.B.a.b.b #34	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36	ENSGT00950000182960.a.a.a.b ##37	ENSGT00940000160116	ENSGT00940000159369	ENSGT00520000061927	ENSGT00950000182960.a.a.a.a.b.rb #37
Xenarthra	ANCESTRAL SPECIES	97	ENSGT00390000017961	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a	ENSGT00940000153560.b.b.a	ENSGT00510000047886.a #8	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000162728 #29
Armadillo	DUPLICATION
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	1664	ENSDNOG00000032700	ENSDNOG00000040578	NPTX2 (ENSDNOG00000012420)	BAIAP2L1 (ENSDNOG00000039104)	TECPR1 (ENSDNOG00000048784) #8	LMTK2 (ENSDNOG00000036745) #10	ENSDNOG00000007139 #11	ENSDNOG00000024536 #12	ENSDNOG00000042571 #13	PMS2 (ENSDNOG00000042543) #14	AIMP2 (ENSDNOG00000043945) #15	ANKRD61 (ENSDNOG00000016956) #16	EIF2AK1 (ENSDNOG00000016950) #17	USP42 (ENSDNOG00000031362) #18	CYTH3 (ENSDNOG00000019655) #19	ENSDNOG00000015574 #22	DAGLB (ENSDNOG00000017587) #23	KDELR2 (ENSDNOG00000047978) #24	GRID2IP (ENSDNOG00000048258) #25	ZDHHC4 (ENSDNOG00000009165) #26	INTS15 (ENSDNOG00000043984) #27	ZNF316 (ENSDNOG00000041372) #29
Armadillo	MODERN SPECIES	3907																ENSDNOG00000042733 #22
Armadillo	MODERN SPECIES	2552								HECW2 (ENSDNOG00000011278)	CCDC150 (ENSDNOG00000017806)	GTF3C3 (ENSDNOG00000017811)	C2orf66 (ENSDNOG00000017813)	PGAP1 (ENSDNOG00000018348)	ENSDNOG00000030871	ENSDNOG00000037436	ANKRD44 (ENSDNOG00000034608)	ENSDNOG00000037521 #22	SF3B1 (ENSDNOG00000011754)	COQ10B (ENSDNOG00000031357)	ENSDNOG00000013226	ENSDNOG00000008252	ENSDNOG00000041539	RFTN2 (ENSDNOG00000001933)	MARS2 (ENSDNOG00000041522)	BOLL (ENSDNOG00000017076)	ENSDNOG00000035028	ENSDNOG00000000115	PLCL1 (ENSDNOG00000030916)
Afrotheria	ANCESTRAL SPECIES	18	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00950000184989	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000162728 #29	ENSGT00940000154303.A #33	ENSGT01050000244815.B.a.b.b #34	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36	ENSGT00950000182960.a.a.a.b ##37	ENSGT00940000160116	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015109
Tenrec	MODERN SPECIES	3218																RAC1 (ENSETEG00000001830) #22
Afrotheria_a	ANCESTRAL SPECIES	65	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00950000184989	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000162728 #29	ENSGT00940000154303.A #33	ENSGT01050000244815.B.a.b.b #34	ENSGT00510000048032 #35	ENSGT00950000183157.a.a.b #36	ENSGT00390000015109	ENSGT00940000157099	ENSGT00950000182898.a.b	ENSGT00940000155537	ENSGT00940000157972
Hyrax	MODERN SPECIES	2624																RAC1 (ENSPCAG00000000530) #22	DAGLB (ENSPCAG00000000553) #23
Elephant	MODERN SPECIES	403	BRI3 (ENSLAFG00000031280) #7	TECPR1 (ENSLAFG00000021861) #8	BHLHA15 (ENSLAFG00000000139) #9	LMTK2 (ENSLAFG00000000137) #10	ENSLAFG00000027808 #11	ENSLAFG00000026343 #12	ENSLAFG00000011948 #13	PMS2 (ENSLAFG00000018588) #14	AIMP2 (ENSLAFG00000018590) #15	ANKRD61 (ENSLAFG00000012703) #16	EIF2AK1 (ENSLAFG00000012693) #17	USP42 (ENSLAFG00000013305) #18	ENSLAFG00000028040	CYTH3 (ENSLAFG00000010832) #19	ENSLAFG00000003150 #20	RAC1 (ENSLAFG00000012844) #22	ENSLAFG00000004986 #23	KDELR2 (ENSLAFG00000004992) #24	GRID2IP (ENSLAFG00000020636) #25	ZDHHC4 (ENSLAFG00000010790) #26	INTS15 (ENSLAFG00000010793) #27	ZNF316 (ENSLAFG00000016201) #29	RBAK (ENSLAFG00000008833) #33	ENSLAFG00000030133 #34	RNF216 (ENSLAFG00000017088) #35	FSCN1 (ENSLAFG00000031431) #36	ENSLAFG00000001268 ##37	FBXL18 (ENSLAFG00000001983)	ENSLAFG00000004819	SLC29A4 (ENSLAFG00000014371)	WIPI2 (ENSLAFG00000001086)
Marsupialia	ANCESTRAL SPECIES	6	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000165760	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000013648	ENSGT00390000014131	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915	ENSGT00940000164007
Marsupialia_b	ANCESTRAL SPECIES	18	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000165760	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000013648	ENSGT00390000014131	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915	ENSGT00940000164007
Diprotodontia	ANCESTRAL SPECIES	14	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000165760	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000013648	ENSGT00390000014131	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915	ENSGT00940000164007	ENSGT00940000155289.C.a.a.a.b
Diprotodontia_a	ANCESTRAL SPECIES	13	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000165760	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000013648	ENSGT00390000014131	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915	ENSGT00940000164007	ENSGT00940000155289.C.a.a.a.b
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1043	ENSVURG00010019640 #8	ENSVURG00010019668 #9	ENSVURG00010019676 #10	ENSVURG00010019693	ENSVURG00010019699	ENSVURG00010019709 #12	ENSVURG00010019734 #13	ENSVURG00010019748	ENSVURG00010019752 #14	ENSVURG00010019767 #15	ENSVURG00010019776 #17	ENSVURG00010019789 #16	ENSVURG00010019798 #18	ENSVURG00010019813 #19	ENSVURG00010019838 #20	ENSVURG00010019849 #22	ENSVURG00010019859 #23	ENSVURG00010019872 #24	ENSVURG00010019881	ENSVURG00010019899	ENSVURG00010019912	ENSVURG00010019918	ENSVURG00010019925	ENSVURG00010019953	ENSVURG00010020040	ENSVURG00010020048	ENSVURG00010020052	ENSVURG00010020059	ENSVURG00010020130	ENSVURG00010020475	ENSVURG00010020485
Common wonbat	MODERN SPECIES	1043	ENSVURG00010017613 #10	ENSVURG00010017628	ENSVURG00010017631 #11	ENSVURG00010017641 #12	ENSVURG00010017659 #13	ENSVURG00010017664	ENSVURG00010017670 #14	ENSVURG00010017682 #15	ENSVURG00010017687 #17	ENSVURG00010017699 #16	ENSVURG00010017704 #18	ENSVURG00010017709 #18	ENSVURG00010017715 #19	ENSVURG00010017722 #20	ENSVURG00010017723	ENSVURG00010017726 #22	ENSVURG00010017736 #23	ENSVURG00010017744 #24	ENSVURG00010017749	ENSVURG00010017757	ENSVURG00010017762	ENSVURG00010017764	ENSVURG00010017767	ENSVURG00010017774	ENSVURG00010017786	ENSVURG00010017796	ENSVURG00010017800	ENSVURG00010017811	ENSVURG00010017868	ENSVURG00010018054	ENSVURG00010018063
koala	MODERN SPECIES	159	TECPR1 (ENSPCIG00000030290) #8	BHLHA15 (ENSPCIG00000030288) #9	LMTK2 (ENSPCIG00000030286) #10	ENSPCIG00000030285	ENSPCIG00000030283	ENSPCIG00000030282 #12	ENSPCIG00000030281 #13	PMS2 (ENSPCIG00000030280) #14	AIMP2 (ENSPCIG00000030279) #15	EIF2AK1 (ENSPCIG00000030277) #17	ANKRD61 (ENSPCIG00000030278) #16	USP42 (ENSPCIG00000030275) #18	CYTH3 (ENSPCIG00000030271) #19	ENSPCIG00000030274	ENSPCIG00000030272 #20	RAC1 (ENSPCIG00000030270) #22	DAGLB (ENSPCIG00000030269) #23	KDELR2 (ENSPCIG00000030268) #24	OTOA (ENSPCIG00000030267)	METTL9 (ENSPCIG00000030262)	IGSF6 (ENSPCIG00000030264)	ENSPCIG00000030261	CDR2 (ENSPCIG00000032986)	POLR3E (ENSPCIG00000019767)	EEF2K (ENSPCIG00000019761)	ENSPCIG00000011458	MOSMO (ENSPCIG00000033838)	PDZD9 (ENSPCIG00000008907)	UQCRC2 (ENSPCIG00000008904)	ENSPCIG00000019992	ENSPCIG00000029226
Tasmanian devil	MODERN SPECIES		ENSSHAG00000027321 #7	TECPR1 (ENSSHAG00000015638) #8	BHLHA15 (ENSSHAG00000031719) #9	ENSSHAG00000024069 #10	ENSSHAG00000014808	ENSSHAG00000014562	ENSSHAG00000014374 #12	ENSSHAG00000014136 #13	PMS2 (ENSSHAG00000013933) #14	AIMP2 (ENSSHAG00000013868) #15	EIF2AK1 (ENSSHAG00000013711) #17	ANKRD61 (ENSSHAG00000013772) #16	USP42 (ENSSHAG00000013089) #18	CYTH3 (ENSSHAG00000023428) #19	ENSSHAG00000012025 #20	RAC1 (ENSSHAG00000011057) #22	DAGLB (ENSSHAG00000010735) #23	ENSSHAG00000004883 #24	ENSSHAG00000009790	ENSSHAG00000009259	ENSSHAG00000023855	ENSSHAG00000008395	ENSSHAG00000024843	POLR3E (ENSSHAG00000007956)	EEF2K (ENSSHAG00000007171)	SDR42E2 (ENSSHAG00000006330)	VWA3A (ENSSHAG00000005420)	MOSMO (ENSSHAG00000029575)	PDZD9 (ENSSHAG00000002387)	ENSSHAG00000001179	ENSSHAG00000027183
Opossum	MODERN SPECIES	5	BRI3 (ENSMODG00000041144) #7	TECPR1 (ENSMODG00000008338) #8	BHLHA15 (ENSMODG00000025044) #9	LMTK2 (ENSMODG00000008276) #10	ENSMODG00000008249	ENSMODG00000008239	ENSMODG00000008225 #12	ENSMODG00000008200 #13	PMS2 (ENSMODG00000008178) #14	AIMP2 (ENSMODG00000008128) #15	ANKRD61 (ENSMODG00000008105) #16	EIF2AK1 (ENSMODG00000008099) #17	USP42 (ENSMODG00000008055) #18	CYTH3 (ENSMODG00000008046) #19	ENSMODG00000025051	RAC1 (ENSMODG00000007914) #22	ENSMODG00000007919 #20	DAGLB (ENSMODG00000007878) #23	KDELR2 (ENSMODG00000007832) #24	OTOA (ENSMODG00000007815)	IGSF6 (ENSMODG00000007789)	METTL9 (ENSMODG00000007774)	ENSMODG00000007766	CDR2 (ENSMODG00000007761)	POLR3E (ENSMODG00000007752)	EEF2K (ENSMODG00000007732)	ENSMODG00000007697	ENSMODG00000007681	MOSMO (ENSMODG00000049861)	ENSMODG00000044007	ENSMODG00000007652
Platypus	MODERN SPECIES	11	BAIAP2L1 (ENSOANG00000001935)	BRI3 (ENSOANG00000047574) #7	TECPR1 (ENSOANG00000001936) #8	BHLHA15 (ENSOANG00000001937) #9	LMTK2 (ENSOANG00000001939) #10	ENSOANG00000001942	ENSOANG00000000763	ENSOANG00000000762 #12	PMS2 (ENSOANG00000001944) #14	AIMP2 (ENSOANG00000043994) #15	EIF2AK1 (ENSOANG00000002795) #17	USP42 (ENSOANG00000003278) #18	CYTH3 (ENSOANG00000003277) #19	ENSOANG00000003276 #20	ENSOANG00000048802	RAC1 (ENSOANG00000045665) #22	DAGLB (ENSOANG00000003274) #23	KDELR2 (ENSOANG00000003273) #24	OTOA (ENSOANG00000003269)	METTL9 (ENSOANG00000003267)	IGSF6 (ENSOANG00000003268)	ENSOANG00000047388	CDR2 (ENSOANG00000037184)	POLR3E (ENSOANG00000003264)	EEF2K (ENSOANG00000003263)	SDR42E2 (ENSOANG00000005373)	VWA3A (ENSOANG00000003262)	MOSMO (ENSOANG00000003261)	PDZD9 (ENSOANG00000003260)	UQCRC2 (ENSOANG00000003259)	CRYM (ENSOANG00000049114)
Sauria	ANCESTRAL SPECIES	12	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00840000130004 #16	ENSGT00940000157605 #17	ENSGT00940000154596.b #18	ENSGT00950000184989	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT01070000254102	ENSGT00390000014547	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT01030000238211	ENSGT00940000157839	ENSGT00940000160393	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915
Lepidosauria	ANCESTRAL SPECIES	22	ENSGT00940000165760	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00840000130004 #16	ENSGT00940000157605 #17	ENSGT00940000154596.b #18	ENSGT00950000184989	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000013648	ENSGT00390000014131	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT01030000238211	ENSGT00940000157839	ENSGT00940000160393	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915
Episquamata	ANCESTRAL SPECIES	8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00840000130004 #16	ENSGT00940000157605 #17	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT01030000238211	ENSGT00940000157839	ENSGT00940000160393	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915
Laterata	ANCESTRAL SPECIES	22	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825.i #19	ENSGT00390000014156 #20	ENSGT00390000014547	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915	ENSGT00390000000237	ENSGT00390000017548.a
Common wall lizard	MODERN SPECIES	5	ENSPMRG00000022716	ENSPMRG00000022718	ENSPMRG00000022724 #12	ENSPMRG00000022729	ENSPMRG00000022733 #13	PMS2 (ENSPMRG00000022739) #14	AIMP2 (ENSPMRG00000022742) #15	EIF2AK1 (ENSPMRG00000022745) #17	ANKRD61 (ENSPMRG00000022754) #16	USP42 (ENSPMRG00000022758) #18	ENSPMRG00000022766 #19	ENSPMRG00000022771 #19	ENSPMRG00000022774	FAM220A (ENSPMRG00000022775) #20	ENSPMRG00000022780	RAC1 (ENSPMRG00000022784) #22	DAGLB (ENSPMRG00000022790) #23	KDELR2 (ENSPMRG00000022802) #24	OTOA (ENSPMRG00000022809)	METTL9 (ENSPMRG00000022816)	IGSF6 (ENSPMRG00000022817)	ENSPMRG00000022821	CDR2 (ENSPMRG00000022824)	POLR3E (ENSPMRG00000022828)	EEF2K (ENSPMRG00000022835)	ENSPMRG00000022841	ENSPMRG00000022852	USP22 (ENSPMRG00000022858)	DHRS7B (ENSPMRG00000022868)	TMEM11 (ENSPMRG00000022875)	ENSPMRG00000022878
Argentine black and white tegu	MODERN SPECIES	102	TECPR1 (ENSSMRG00000020078) #8	BHLHA15 (ENSSMRG00000020077) #9	LMTK2 (ENSSMRG00000020076) #10	ENSSMRG00000020075	ENSSMRG00000020074	ENSSMRG00000020073 #12	ENSSMRG00000020069 #13	PMS2 (ENSSMRG00000020068) #14	AIMP2 (ENSSMRG00000020067) #15	ANKRD61 (ENSSMRG00000020066) #16	EIF2AK1 (ENSSMRG00000020065) #17	USP42 (ENSSMRG00000020064) #18	CYTH3 (ENSSMRG00000020063) #19	ENSSMRG00000020060 #20	ENSSMRG00000020059	RAC1 (ENSSMRG00000020058) #22	DAGLB (ENSSMRG00000020057) #23	KDELR2 (ENSSMRG00000020056) #24	OTOA (ENSSMRG00000020055)	ENSSMRG00000020054	ENSSMRG00000020053	METTL9 (ENSSMRG00000020052)	ENSSMRG00000020051	CDR2 (ENSSMRG00000020050)	POLR3E (ENSSMRG00000020049)	EEF2K (ENSSMRG00000020048)	ENSSMRG00000020044	MOSMO (ENSSMRG00000020043)	PDZD9 (ENSSMRG00000020041)	UQCRC2 (ENSSMRG00000020040)	CRYM (ENSSMRG00000020039)
Toxicofera	ANCESTRAL SPECIES	14	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00840000130004 #16	ENSGT00940000157605 #17	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT01030000238211	ENSGT00940000157839	ENSGT00940000160393	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915
Elapidae	ANCESTRAL SPECIES	1	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381.m #14	ENSGT00390000015826.m.b #15	ENSGT00390000015826.n #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00980000198850	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT01030000238211	ENSGT00940000157839	ENSGT00940000160393	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915	ENSGT00390000000237
Elapidae_a	ANCESTRAL SPECIES	3	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381.m #14	ENSGT00390000015826.m.a #15	ENSGT00390000015826.n #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00980000198850	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT01030000238211	ENSGT00940000157839
Acanthophiinae	ANCESTRAL SPECIES	2	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381.m #14	ENSGT00390000015826.m.a #15	ENSGT00390000015826.m.b #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00980000198850	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT01030000238211	ENSGT00940000157839	ENSGT00940000160393	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915	ENSGT00390000000237.g	ENSGT00390000017548.a
Eastern brown snake	MODERN SPECIES	24	PDGFA (ENSPTXG00000006612)	FAM20C (ENSPTXG00000006610)	TRRAP (ENSPTXG00000001456)	BAIAP2L1 (ENSPTXG00000001205)	BRI3 (ENSPTXG00000001180) #7	BHLHA15 (ENSPTXG00000001176) #9	ENSPTXG00000001173	ENSPTXG00000001168	ENSPTXG00000001123	ENSPTXG00000001115 #12	ENSPTXG00000001109 #13	ENSPTXG00000001104 #14	CYTH3 (ENSPTXG00000001066) #19	ENSPTXG00000001047 #20	ENSPTXG00000001045	RAC1 (ENSPTXG00000001040) #22	DAGLB (ENSPTXG00000000995) #23	METTL9 (ENSPTXG00000000992)	ENSPTXG00000000989	EEF2K (ENSPTXG00000000987)	SDR42E2 (ENSPTXG00000000984)	MOSMO (ENSPTXG00000000981)	PDZD9 (ENSPTXG00000000978)	LDAF1 (ENSPTXG00000000974)	ENSPTXG00000000971	ENSPTXG00000000967	ENSPTXG00000000962	ENSPTXG00000000957	LYRM1 (ENSPTXG00000000953)	DCUN1D3 (ENSPTXG00000000950)	ENSPTXG00000000947
Mainland tiger snake	MODERN SPECIES	2842																ENSNSUG00000000237 #22
Blue-lipped sea krait	MODERN SPECIES	4638									ADAP1 (ENSLLTG00000007300)	GET4 (ENSLLTG00000007330)	SUN1 (ENSLLTG00000007375)	DNAAF5 (ENSLLTG00000007564)	ENSLLTG00000007633	ENSLLTG00000007659 #20	ENSLLTG00000007687	RAC1 (ENSLLTG00000007714) #22	DAGLB (ENSLLTG00000007768) #23	KDELR2 (ENSLLTG00000007861) #24
Indian cobra	MODERN SPECIES	15	BRI3 (ENSNNAG00000015632) #7	TECPR1 (ENSNNAG00000015591) #8	BHLHA15 (ENSNNAG00000015579) #9	LMTK2 (ENSNNAG00000015557) #10	ENSNNAG00000015537	ENSNNAG00000015521	ENSNNAG00000015499 #12	ENSNNAG00000015464 #13	PMS2 (ENSNNAG00000015295) #14	AIMP2 (ENSNNAG00000015266) #15	ANKRD61 (ENSNNAG00000015256) #16	EIF2AK1 (ENSNNAG00000015234) #17	USP42 (ENSNNAG00000015212) #18	ENSNNAG00000015187 #20	ENSNNAG00000015145	RAC1 (ENSNNAG00000015130) #22	DAGLB (ENSNNAG00000015089) #23	KDELR2 (ENSNNAG00000015076) #24	OTOA (ENSNNAG00000015019)	METTL9 (ENSNNAG00000014998)	ENSNNAG00000014986	CDR2 (ENSNNAG00000014969)	POLR3E (ENSNNAG00000014897)	EEF2K (ENSNNAG00000014796)	MOSMO (ENSNNAG00000014761)	PDZD9 (ENSNNAG00000014738)	UQCRC2 (ENSNNAG00000014686)	CRYM (ENSNNAG00000014657)	ANKS4B (ENSNNAG00000014642)	MCHR1 (ENSNNAG00000014634)	ENSNNAG00000014606
Lizard	MODERN SPECIES	1119	ENSACAG00000012378 #9	ENSACAG00000043857	ENSACAG00000012269	ENSACAG00000012302 #10	ENSACAG00000012176 #12	ENSACAG00000005321 #13	PMS2 (ENSACAG00000013264) #14	AIMP2 (ENSACAG00000036942) #15	ENSACAG00000038983 #16	EIF2AK1 (ENSACAG00000013139) #17	USP42 (ENSACAG00000013073) #18	CYTH3 (ENSACAG00000012975) #19	ENSACAG00000040884 #20	ENSACAG00000037064	ENSACAG00000041481	RAC1 (ENSACAG00000012949) #22	ENSACAG00000024409	KDELR2 (ENSACAG00000012844) #24	ENSACAG00000035347	OTOA (ENSACAG00000012735)	IGSF6 (ENSACAG00000029053)	METTL9 (ENSACAG00000012704)
tuatara	MODERN SPECIES	971				ENSSPUG00000003750	ENSSPUG00000003766 #12	ENSSPUG00000003798 #13	PMS2 (ENSSPUG00000003912) #14	AIMP2 (ENSSPUG00000003939) #15	EIF2AK1 (ENSSPUG00000003956) #17	ENSSPUG00000003980 #18	ENSSPUG00000003987 #18	ENSSPUG00000003995	CYTH3 (ENSSPUG00000004006) #19	FAM220A (ENSSPUG00000004033) #20	ENSSPUG00000004040	RAC1 (ENSSPUG00000004044) #22	DAGLB (ENSSPUG00000004057) #23	KDELR2 (ENSSPUG00000004082) #24	OTOA (ENSSPUG00000004106)	METTL9 (ENSSPUG00000004162)	IGSF6 (ENSSPUG00000004176)	ENSSPUG00000004188	CDR2 (ENSSPUG00000004210)	POLR3E (ENSSPUG00000004227)	EEF2K (ENSSPUG00000004263)	VWA3A (ENSSPUG00000004344)	MOSMO (ENSSPUG00000004516)	UQCRC2 (ENSSPUG00000004521)	CRYM (ENSSPUG00000004556)	ANKS4B (ENSSPUG00000004626)	ZP2 (ENSSPUG00000004665)
Archelosauria	ANCESTRAL SPECIES	12	ENSGT00940000165760	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00950000184989	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT01070000254102	ENSGT00390000014547	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT01030000238211	ENSGT00940000157839	ENSGT00940000160393.a	ENSGT00940000160393.b	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326
Cryptodira	ANCESTRAL SPECIES	12	ENSGT00940000158475 #10	ENSGT00940000165760	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00840000130004 #16	ENSGT00940000157605 #17	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547	ENSGT01070000254102	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT01030000238211	ENSGT00940000157839	ENSGT00940000160393.a	ENSGT00940000160393.b	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326
Testudinoidea	ANCESTRAL SPECIES	6	ENSGT00940000158475 #10	ENSGT00940000165760	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00840000130004 #16	ENSGT00940000157605 #17	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547	ENSGT01070000254102	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT01030000238211	ENSGT00940000157839	ENSGT00940000160393.a	ENSGT00940000160393.b	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326
Emydidae	ANCESTRAL SPECIES	12	ENSGT00940000158475 #10	ENSGT00940000165760	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT01070000254102	ENSGT00390000014547	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393.a	ENSGT00940000160393.b	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915
Three-toed box turtle	MODERN SPECIES	37	LMTK2 (ENSTMTG00000017283) #10	ENSTMTG00000017314	ENSTMTG00000017329	ENSTMTG00000017346 #12	ENSTMTG00000017382 #13	ENSTMTG00000017429 #14	ENSTMTG00000017435 #14	AIMP2 (ENSTMTG00000017441) #15	EIF2AK1 (ENSTMTG00000017453) #17	ANKRD61 (ENSTMTG00000017473) #16	USP42 (ENSTMTG00000017492) #18	CYTH3 (ENSTMTG00000017525) #19	FAM220A (ENSTMTG00000017673) #20	ENSTMTG00000017683	ENSTMTG00000017688	RAC1 (ENSTMTG00000017694) #22	DAGLB (ENSTMTG00000017708) #23	KDELR2 (ENSTMTG00000014123) #24	OTOA (ENSTMTG00000014132)	METTL9 (ENSTMTG00000014157)	IGSF6 (ENSTMTG00000014170)	CDR2 (ENSTMTG00000014184)	POLR3E (ENSTMTG00000014202)	EEF2K (ENSTMTG00000014245)	SDR42E2 (ENSTMTG00000014281)	VWA3A (ENSTMTG00000014320)	MOSMO (ENSTMTG00000014399)	PDZD9 (ENSTMTG00000014416)	UQCRC2 (ENSTMTG00000014432)	CRYM (ENSTMTG00000014453)	ANKS4B (ENSTMTG00000014467)
painted turtle	MODERN SPECIES	2421	BRI3 (ENSCPBG00000020004) #7	TECPR1 (ENSCPBG00000020001) #8	BHLHA15 (ENSCPBG00000019998) #9	LMTK2 (ENSCPBG00000019995) #10	ENSCPBG00000019992	ENSCPBG00000019990	ENSCPBG00000019986 #12	ENSCPBG00000019972 #13	AIMP2 (ENSCPBG00000019964) #15	ANKRD61 (ENSCPBG00000019961) #16	EIF2AK1 (ENSCPBG00000019958) #17	USP42 (ENSCPBG00000019954) #18	CYTH3 (ENSCPBG00000019371) #19	ENSCPBG00000019331 #20	ENSCPBG00000019334	RAC1 (ENSCPBG00000019327) #22	DAGLB (ENSCPBG00000019318) #23	KDELR2 (ENSCPBG00000019315) #24	OTOA (ENSCPBG00000019304)	IGSF6 (ENSCPBG00000019298)	METTL9 (ENSCPBG00000019295)	ENSCPBG00000019293	CDR2 (ENSCPBG00000019290)	POLR3E (ENSCPBG00000019284)	EEF2K (ENSCPBG00000019280)	ENSCPBG00000019278	ENSCPBG00000019277	VWA3A (ENSCPBG00000019273)	MOSMO (ENSCPBG00000019269)	PDZD9 (ENSCPBG00000019268)	UQCRC2 (ENSCPBG00000019263)
Testudinidae	ANCESTRAL SPECIES	13	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000165760	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00840000130004 #16	ENSGT00940000157605 #17	ENSGT00940000154596.b #18	ENSGT00940000155825 #19	ENSGT00390000014156 #20	ENSGT00390000014547	ENSGT01070000254102	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT01030000238211	ENSGT00940000157839	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915	ENSGT00390000000237
Goode s thornscrub tortoise	MODERN SPECIES	1	TECPR1 (ENSGEVG00005007358) #8	LMTK2 (ENSGEVG00005007310) #10	ENSGEVG00005007284	ENSGEVG00005007262	ENSGEVG00005007222 #12	ENSGEVG00005006943 #13	PMS2 (ENSGEVG00005006849) #14	AIMP2 (ENSGEVG00005006828) #15	ANKRD61 (ENSGEVG00005006803) #16	EIF2AK1 (ENSGEVG00005006770) #17	USP42 (ENSGEVG00005006731) #18	CYTH3 (ENSGEVG00005006632) #19	ENSGEVG00005006610	ENSGEVG00005006589 #20	ENSGEVG00005006554	RAC1 (ENSGEVG00005006535) #22	DAGLB (ENSGEVG00005006511) #23	KDELR2 (ENSGEVG00005006489) #24	OTOA (ENSGEVG00005006398)	IGSF6 (ENSGEVG00005006360)	METTL9 (ENSGEVG00005006338)	ENSGEVG00005006323	CDR2 (ENSGEVG00005006256)	POLR3E (ENSGEVG00005006203)	ENSGEVG00005006170	EEF2K (ENSGEVG00005006130)	VWA3A (ENSGEVG00005006036)	MOSMO (ENSGEVG00005006006)	PDZD9 (ENSGEVG00005005979)	UQCRC2 (ENSGEVG00005005957)	ENSGEVG00005005931
Abingdon island giant tortoise	MODERN SPECIES	2204											ENSCABG00000022878 #18	CYTH3 (ENSCABG00000022881) #19	FAM220A (ENSCABG00000022884) #20	ENSCABG00000022885	ENSCABG00000022886	RAC1 (ENSCABG00000022887) #22	DAGLB (ENSCABG00000022889) #23	KDELR2 (ENSCABG00000022895) #24	OTOA (ENSCABG00000022896)	METTL9 (ENSCABG00000000240)	ENSCABG00000000282	CDR2 (ENSCABG00000000306)	POLR3E (ENSCABG00000000417)	ENSCABG00000001245	EEF2K (ENSCABG00000001247)	VWA3A (ENSCABG00000001255)	MOSMO (ENSCABG00000001267)	PDZD9 (ENSCABG00000001272)	UQCRC2 (ENSCABG00000001280)	CRYM (ENSCABG00000001287)	ANKS4B (ENSCABG00000001292)
Chinese turtle	MODERN SPECIES	264	BRI3 (ENSPSIG00000015097) #7	TECPR1 (ENSPSIG00000015002) #8	BHLHA15 (ENSPSIG00000001236) #9	LMTK2 (ENSPSIG00000014987) #10	ENSPSIG00000014979	ENSPSIG00000014977	ENSPSIG00000014109 #12	ENSPSIG00000013713 #13	PMS2 (ENSPSIG00000013504) #14	AIMP2 (ENSPSIG00000013497) #15	ANKRD61 (ENSPSIG00000001228) #16	EIF2AK1 (ENSPSIG00000013413) #17	USP42 (ENSPSIG00000013406) #18	CYTH3 (ENSPSIG00000012850) #19	ENSPSIG00000012837	RAC1 (ENSPSIG00000012649) #22	DAGLB (ENSPSIG00000012043) #23	KDELR2 (ENSPSIG00000011493) #24	ENSPSIG00000011252	ENSPSIG00000011249	ENSPSIG00000011242	ENSPSIG00000011150	IGSF6 (ENSPSIG00000011142)	METTL9 (ENSPSIG00000010487)	ENSPSIG00000010072	CDR2 (ENSPSIG00000009869)	POLR3E (ENSPSIG00000009701)	EEF2K (ENSPSIG00000009639)	ENSPSIG00000009631	SDR42E2 (ENSPSIG00000009465)
Archosauria	ANCESTRAL SPECIES	8	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT01040000244002	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b #18	ENSGT00950000184989	ENSGT00940000155825 #19	ENSGT01070000254102	ENSGT00390000014156 #20	ENSGT00390000014547	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393.a	ENSGT00940000160393.b	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915
Aves	ANCESTRAL SPECIES	11	ENSGT00940000165760	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT01040000244002	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b.w #18	ENSGT00950000184989	ENSGT00940000155825 #19	ENSGT01070000254102	ENSGT00390000014547	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393.a	ENSGT00940000160393.b	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915
Neognathae	ANCESTRAL SPECIES	10	ENSGT00940000165760	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT01040000244002	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00840000130004 #16	ENSGT00940000157605 #17	ENSGT00940000154596.b.w #18	ENSGT00950000184989	ENSGT00940000155825 #19	ENSGT00390000014547	ENSGT01070000254102	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393.a	ENSGT00940000160393.b	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915
Galloanserae	ANCESTRAL SPECIES	9	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000165760	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00840000130004 #16	ENSGT00940000157605 #17	ENSGT00940000154596.b.w #18	ENSGT00940000155825 #19	ENSGT00390000014547	ENSGT01070000254102	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393.a	ENSGT00940000160393.b	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915
Anatidae	ANCESTRAL SPECIES	7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000165760	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00840000130004 #16	ENSGT00940000154596.b.w #18	ENSGT00940000155825 #19	ENSGT01070000254102	ENSGT00390000014547	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393.a	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915	ENSGT00390000000237
Duck	MODERN SPECIES	6	BAIAP2L1 (ENSAPLG00000006154)	BRI3 (ENSAPLG00000006151) #7	TECPR1 (ENSAPLG00000005628) #8	LMTK2 (ENSAPLG00000005439) #10	ENSAPLG00000005423	ENSAPLG00000028327	ENSAPLG00000005393	ENSAPLG00000004993 #12	ENSAPLG00000004779 #13	PMS2 (ENSAPLG00000004599) #14	AIMP2 (ENSAPLG00000004525) #15	EIF2AK1 (ENSAPLG00000004173) #17	ANKRD61 (ENSAPLG00000018460) #16	ENSAPLG00000026175 #18	CYTH3 (ENSAPLG00000003580) #19	RAC1 (ENSAPLG00000003568) #22	DAGLB (ENSAPLG00000003340) #23	ENSAPLG00000026279	KDELR2 (ENSAPLG00000002978) #24	OTOA (ENSAPLG00000004657)	METTL9 (ENSAPLG00000004648)	ENSAPLG00000004542	CDR2 (ENSAPLG00000004288)	POLR3E (ENSAPLG00000003834)	EEF2K (ENSAPLG00000003456)	SDR42E2 (ENSAPLG00000003241)	ENSAPLG00000002824	MOSMO (ENSAPLG00000002716)	PDZD9 (ENSAPLG00000002708)	UQCRC2 (ENSAPLG00000002008)	CRYM (ENSAPLG00000029698)
Pink-footed goose	MODERN SPECIES	176	TECPR1 (ENSABRG00000011226) #8	BHLHA15 (ENSABRG00000011538) #9	LMTK2 (ENSABRG00000011547) #10	ENSABRG00000011599	ENSABRG00000011606	ENSABRG00000011620 #12	ENSABRG00000011761 #13	PMS2 (ENSABRG00000011884) #14	AIMP2 (ENSABRG00000012647) #15	EIF2AK1 (ENSABRG00000012654) #17	ENSABRG00000012674 #16	USP42 (ENSABRG00000012713) #18	CYTH3 (ENSABRG00000012839) #19	ENSABRG00000012852	ENSABRG00000012860	RAC1 (ENSABRG00000012870) #22	DAGLB (ENSABRG00000012930) #23	KDELR2 (ENSABRG00000013319) #24	ENSABRG00000013329
Phasianidae	ANCESTRAL SPECIES	10	ENSGT00390000002886.b.a	ENSGT01040000240668	ENSGT00940000156222.b	ENSGT00950000182696.A.b	ENSGT00950000182894.A.b.a	ENSGT00950000183193.A.c.a	ENSGT00390000004428.b	ENSGT00940000166211	ENSGT00390000013271	ENSGT00390000013826	ENSGT00940000161164	ENSGT00390000001653	ENSGT00940000155825 #19	ENSGT00390000014547	ENSGT01070000254102	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393.a	ENSGT00940000160393.b	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000004090	ENSGT00510000047820
Japanese quail	MODERN SPECIES	5	ENSCJPG00005016056	GRIN2A (ENSCJPG00005016052)	ENSCJPG00005016051	EMP2 (ENSCJPG00005016050)	TEKT5 (ENSCJPG00005016048)	NUBP1 (ENSCJPG00005015943)	TVP23A (ENSCJPG00005015942)	ENSCJPG00005015941	DEXI (ENSCJPG00005015940)	CLEC16A (ENSCJPG00005015929)	SOCS1 (ENSCJPG00005015928)	RMI2 (ENSCJPG00005015927)	CYTH3 (ENSCJPG00005015904) #19	ENSCJPG00005015903	ENSCJPG00005015902	RAC1 (ENSCJPG00005015901) #22	DAGLB (ENSCJPG00005015672) #23	KDELR2 (ENSCJPG00005015665) #24	OTOA (ENSCJPG00005015664)	IGSF6 (ENSCJPG00005015663)	METTL9 (ENSCJPG00005015662)	ENSCJPG00005015660	CDR2 (ENSCJPG00005015659)	POLR3E (ENSCJPG00005015637)	EEF2K (ENSCJPG00005015537)	SDR42E2 (ENSCJPG00005015525)	VWA3A (ENSCJPG00005015484)	MOSMO (ENSCJPG00005015478)	CCP110 (ENSCJPG00005015446)	GDE1 (ENSCJPG00005015445)	TMC5 (ENSCJPG00005015444)
Phasianidae_b	ANCESTRAL SPECIES	10	ENSGT00390000002886.b.a	ENSGT01040000240668	ENSGT00940000156222.b	ENSGT00950000182696.A.b	ENSGT00950000182894.A.b.a	ENSGT00950000183193.A.c.a	ENSGT00390000004428.b	ENSGT00940000166211	ENSGT00390000013271	ENSGT00390000013826	ENSGT00940000161164	ENSGT00390000001653	ENSGT00940000155825 #19	ENSGT00390000014547	ENSGT01070000254102	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393.a	ENSGT00940000160393.b	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000004090	ENSGT00510000047820
Turkey	MODERN SPECIES	7	ENSMGAG00000007995	ENSMGAG00000020860	ENSMGAG00000018254	MOSMO (ENSMGAG00000008008)	ENSMGAG00000018923	ENSMGAG00000008011	ENSMGAG00000008040	EEF2K (ENSMGAG00000008053)	ENSMGAG00000008083	ENSMGAG00000022522	ENSMGAG00000008133	OTOA (ENSMGAG00000008162)	ENSMGAG00000008150	METTL9 (ENSMGAG00000008143)	KDELR2 (ENSMGAG00000008225) #24	ENSMGAG00000008255 #22	ENSMGAG00000008231 #23	ENSMGAG00000008266 #19	ENSMGAG00000021170 #19	ENSMGAG00000015576	ENSMGAG00000008324	DEXI (ENSMGAG00000018604)	ENSMGAG00000008357	ENSMGAG00000008390	ENSMGAG00000008374	ENSMGAG00000008405	ENSMGAG00000008419	ENSMGAG00000016606	ENSMGAG00000008432	ENSMGAG00000022646	ENSMGAG00000008488
Chicken	MODERN SPECIES	5	C16orf72 (ENSGALG00010018381)	ENSGALG00010022555	GRIN2A (ENSGALG00010019595)	EMP2 (ENSGALG00010019495)	TEKT5 (ENSGALG00010019488)	NUBP1 (ENSGALG00010019471)	TVP23A (ENSGALG00010019390)	ENSGALG00010019376	DEXI (ENSGALG00010019336)	CLEC16A (ENSGALG00010019316)	SOCS1 (ENSGALG00010019269)	RMI2 (ENSGALG00010019248)	CYTH3 (ENSGALG00010019239) #19	ENSGALG00010019205	ENSGALG00010019157	RAC1 (ENSGALG00010019145) #22	DAGLB (ENSGALG00010019120) #23	KDELR2 (ENSGALG00010019108) #24	OTOA (ENSGALG00010019083)	IGSF6 (ENSGALG00010019051)	METTL9 (ENSGALG00010019043)	ENSGALG00010019035	ENSGALG00010019005	CDR2 (ENSGALG00010019030)	POLR3E (ENSGALG00010018948)	EEF2K (ENSGALG00010018922)	SDR42E2 (ENSGALG00010017855)	ENSGALG00010017834	VWA3A (ENSGALG00010017822)	C14H16ORF52 (ENSGALG00010017809)	CCP110 (ENSGALG00010021058)
Neognathae_b	ANCESTRAL SPECIES	12	ENSGT00940000158475 #10	ENSGT00940000165760	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT01040000244002	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00940000154596.b.w #18	ENSGT00950000184989	ENSGT00940000155825 #19	ENSGT01070000254102	ENSGT00390000014547	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393.a	ENSGT00940000160393.b	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915
Passeriformes	ANCESTRAL SPECIES	11	ENSGT00940000158475 #10	ENSGT00940000165760	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT01040000244002	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00940000154596.b.w #18	ENSGT00950000184989	ENSGT00940000155825 #19	ENSGT00390000014547	ENSGT01070000254102	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393.a	ENSGT00940000160393.b	ENSGT00940000159290	ENSGT00390000018266	ENSGT00940000154915	ENSGT00390000000237
Passeriformes_d	ANCESTRAL SPECIES	11	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000165760	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT01040000244002	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00940000154596.b.w #18	ENSGT00940000155825 #19	ENSGT00390000014547	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000013648	ENSGT00390000014131	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393.a	ENSGT00940000160393.b	ENSGT00940000159290	ENSGT00390000018266	ENSGT00940000154915	ENSGT00390000000237
Flycatcher	MODERN SPECIES	5	BRI3 (ENSFALG00000013968) #7	TECPR1 (ENSFALG00000013969) #8	BHLHA15 (ENSFALG00000026150) #9	LMTK2 (ENSFALG00000013970) #10	ENSFALG00000013971	ENSFALG00000013972	ENSFALG00000013973	ENSFALG00000013974 #12	ENSFALG00000013975 #13	PMS2 (ENSFALG00000013976) #14	AIMP2 (ENSFALG00000023978) #15	EIF2AK1 (ENSFALG00000013978) #17	ENSFALG00000013980 #18	CYTH3 (ENSFALG00000013981) #19	ENSFALG00000025194	RAC1 (ENSFALG00000013983) #22	DAGLB (ENSFALG00000013985) #23	KDELR2 (ENSFALG00000027292) #24	ENSFALG00000013991	ENSFALG00000013993	IGSF6 (ENSFALG00000013994)	ENSFALG00000013995	CDR2 (ENSFALG00000013996)	POLR3E (ENSFALG00000013997)	EEF2K (ENSFALG00000013999)	ENSFALG00000014001	ENSFALG00000014003	VWA3A (ENSFALG00000014005)	MOSMO (ENSFALG00000014006)	UQCRC2 (ENSFALG00000025314)	CRYM (ENSFALG00000014011)
Passeriformes_g	ANCESTRAL SPECIES	12	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000165760	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT01040000244002	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00940000154596.b.w #18	ENSGT00940000155825 #19	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000013648	ENSGT00390000014131	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393.a	ENSGT00940000160393.b	ENSGT00940000159290	ENSGT00390000018266	ENSGT00940000154915	ENSGT00390000000237
Medium ground finch	MODERN SPECIES	22	BAIAP2L1 (ENSGFOG00000000061)	BRI3 (ENSGFOG00000000066) #7	TECPR1 (ENSGFOG00000000070) #8	BHLHA15 (ENSGFOG00000000072) #9	LMTK2 (ENSGFOG00000000075) #10	ENSGFOG00000000082	ENSGFOG00000000083	ENSGFOG00000000088	ENSGFOG00000000096 #12	ENSGFOG00000000110 #13	PMS2 (ENSGFOG00000000145) #14	AIMP2 (ENSGFOG00000000260) #15	EIF2AK1 (ENSGFOG00000000271) #17	ENSGFOG00000000289 #18	CYTH3 (ENSGFOG00000000298) #19	RAC1 (ENSGFOG00000000305) #22	DAGLB (ENSGFOG00000000312) #23	KDELR2 (ENSGFOG00000000322) #24	OTOA (ENSGFOG00000000342)	METTL9 (ENSGFOG00000000361)	IGSF6 (ENSGFOG00000000369)	ENSGFOG00000000378	CDR2 (ENSGFOG00000000390)	POLR3E (ENSGFOG00000000419)	EEF2K (ENSGFOG00000000467)	SDR42E2 (ENSGFOG00000000506)	ENSGFOG00000000526	MOSMO (ENSGFOG00000000555)	UQCRC2 (ENSGFOG00000000563)	CRYM (ENSGFOG00000000817)	ANKS4B (ENSGFOG00000000828)
Passeroidea	ANCESTRAL SPECIES	11	ENSGT00990000204962	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000165760	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT01040000244002	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00940000154596.b.w #18	ENSGT00940000155825 #19	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393.a	ENSGT00940000160393.b	ENSGT00940000159290	ENSGT00390000018266	ENSGT00940000154915	ENSGT00390000000237
Zebra finch	MODERN SPECIES	5	BAIAP2L1 (ENSTGUG00000008652)	ENSTGUG00000008663	TECPR1 (ENSTGUG00000008666) #8	BHLHA15 (ENSTGUG00000026002) #9	LMTK2 (ENSTGUG00000008720) #10	ENSTGUG00000008734	ENSTGUG00000026871	ENSTGUG00000018409	ENSTGUG00000008740 #12	ENSTGUG00000023675 #13	PMS2 (ENSTGUG00000008778) #14	AIMP2 (ENSTGUG00000008804) #15	EIF2AK1 (ENSTGUG00000008807) #17	ENSTGUG00000008831 #18	CYTH3 (ENSTGUG00000008849) #19	RAC1 (ENSTGUG00000008876) #22	DAGLB (ENSTGUG00000008882) #23	KDELR2 (ENSTGUG00000008903) #24	OTOA (ENSTGUG00000008917)	ENSTGUG00000008963	METTL9 (ENSTGUG00000008956)	ENSTGUG00000008965	CDR2 (ENSTGUG00000027117)	POLR3E (ENSTGUG00000008986)	EEF2K (ENSTGUG00000009003)	ENSTGUG00000009036	ENSTGUG00000009039	VWA3A (ENSTGUG00000009055)	MOSMO (ENSTGUG00000022564)	UQCRC2 (ENSTGUG00000009075)	CRYM (ENSTGUG00000009095)
Common canary	MODERN SPECIES	17	ENSSCAG00000010139	TECPR1 (ENSSCAG00000010142) #8	BHLHA15 (ENSSCAG00000010147) #9	LMTK2 (ENSSCAG00000010161) #10	ENSSCAG00000010190	ENSSCAG00000010195	ENSSCAG00000010201	ENSSCAG00000010212 #12	ENSSCAG00000010234	ENSSCAG00000010238 #13	PMS2 (ENSSCAG00000010260) #14	AIMP2 (ENSSCAG00000010433) #15	EIF2AK1 (ENSSCAG00000010434) #17	ENSSCAG00000010437 #18	CYTH3 (ENSSCAG00000010492) #19	RAC1 (ENSSCAG00000010511) #22	DAGLB (ENSSCAG00000010521) #23	KDELR2 (ENSSCAG00000010550) #24	OTOA (ENSSCAG00000010557)	METTL9 (ENSSCAG00000010575)	IGSF6 (ENSSCAG00000010576)	ENSSCAG00000010577	CDR2 (ENSSCAG00000010579)	POLR3E (ENSSCAG00000010587)	EEF2K (ENSSCAG00000010599)	ENSSCAG00000010618	ENSSCAG00000010624	MOSMO (ENSSCAG00000010631)	UQCRC2 (ENSSCAG00000010638)	CRYM (ENSSCAG00000010646)	ANKS4B (ENSSCAG00000010653)
Great tit	MODERN SPECIES	5	BHLHA15 (ENSPMJG00000017240) #9	LMTK2 (ENSPMJG00000017238) #10	ENSPMJG00000017237	ENSPMJG00000017236	ENSPMJG00000017235	ENSPMJG00000017234 #12	ENSPMJG00000017233 #13	PMS2 (ENSPMJG00000017189) #14	AIMP2 (ENSPMJG00000017188) #15	EIF2AK1 (ENSPMJG00000017187) #17	ENSPMJG00000017186 #18	ENSPMJG00000017185	CYTH3 (ENSPMJG00000017184) #19	ENSPMJG00000017183	ENSPMJG00000017182	RAC1 (ENSPMJG00000017181) #22	DAGLB (ENSPMJG00000017180) #23	KDELR2 (ENSPMJG00000017179) #24	OTOA (ENSPMJG00000017178)	IGSF6 (ENSPMJG00000017177)	METTL9 (ENSPMJG00000017176)	ENSPMJG00000017175	CDR2 (ENSPMJG00000017174)	POLR3E (ENSPMJG00000017173)	EEF2K (ENSPMJG00000017172)	ENSPMJG00000017171	ENSPMJG00000017170	VWA3A (ENSPMJG00000017169)	MOSMO (ENSPMJG00000017168)	UQCRC2 (ENSPMJG00000017166)	CRYM (ENSPMJG00000017165)
Neognathae_c	ANCESTRAL SPECIES	14	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000165760	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #15	ENSGT00940000157605 #17	ENSGT00940000154596.b.w #18	ENSGT00940000155825 #19	ENSGT01070000254102	ENSGT00390000014547	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393.a	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915	ENSGT00390000000237
Kakapo	MODERN SPECIES	21	NPTX2 (ENSSHBG00005005013)	BAIAP2L1 (ENSSHBG00005005002)	BRI3 (ENSSHBG00005004995) #7	TECPR1 (ENSSHBG00005004982) #8	BHLHA15 (ENSSHBG00005004972) #9	LMTK2 (ENSSHBG00005004964) #10	ENSSHBG00005004961	ENSSHBG00005004956	ENSSHBG00005004952 #12	ENSSHBG00005004917 #13	PMS2 (ENSSHBG00005004899) #14	AIMP2 (ENSSHBG00005004893) #15	EIF2AK1 (ENSSHBG00005004878) #17	CYTH3 (ENSSHBG00005004871) #19	ENSSHBG00005004837	RAC1 (ENSSHBG00005004829) #22	DAGLB (ENSSHBG00005004793) #23	KDELR2 (ENSSHBG00005004759) #24	OTOA (ENSSHBG00005004742)	ENSSHBG00005004737	METTL9 (ENSSHBG00005004730)	ENSSHBG00005004725	CDR2 (ENSSHBG00005004721)	POLR3E (ENSSHBG00005004704)	EEF2K (ENSSHBG00005004662)	VWA3A (ENSSHBG00005004619)	MOSMO (ENSSHBG00005004563)	PDZD9 (ENSSHBG00005004550)	UQCRC2 (ENSSHBG00005004541)	ANKS4B (ENSSHBG00005004531)	CRYM (ENSSHBG00005004498)
Golden eagle	MODERN SPECIES	17	TECPR1 (ENSACCG00020015854) #8	BHLHA15 (ENSACCG00020015884) #9	LMTK2 (ENSACCG00020015896) #10	ENSACCG00020015922	ENSACCG00020015936	ENSACCG00020008783	ENSACCG00020008809 #12	ENSACCG00020008831 #13	PMS2 (ENSACCG00020008879) #14	AIMP2 (ENSACCG00020008909) #15	EIF2AK1 (ENSACCG00020008927) #17	ENSACCG00020008962 #18	CYTH3 (ENSACCG00020008998) #19	ENSACCG00020009023	ENSACCG00020009032	RAC1 (ENSACCG00020009045) #22	DAGLB (ENSACCG00020009067) #23	KDELR2 (ENSACCG00020009083) #24	OTOA (ENSACCG00020009113)	METTL9 (ENSACCG00020009139)	IGSF6 (ENSACCG00020009165)	ENSACCG00020009180	ENSACCG00020009190	CDR2 (ENSACCG00020009217)	POLR3E (ENSACCG00020009232)	EEF2K (ENSACCG00020009262)	SDR42E2 (ENSACCG00020009295)	ENSACCG00020009311	MOSMO (ENSACCG00020009321)	UQCRC2 (ENSACCG00020009343)	CRYM (ENSACCG00020009366)
African ostrich	MODERN SPECIES	918	ENSSCUG00000015208	TECPR1 (ENSSCUG00000015213) #8	BHLHA15 (ENSSCUG00000015220) #9	LMTK2 (ENSSCUG00000015228) #10	ENSSCUG00000015238	ENSSCUG00000015241	ENSSCUG00000015246	ENSSCUG00000015249 #12	ENSSCUG00000015254 #13	PMS2 (ENSSCUG00000015258) #14	AIMP2 (ENSSCUG00000015260) #15	EIF2AK1 (ENSSCUG00000015261) #17	ANKRD61 (ENSSCUG00000015264) #16	ENSSCUG00000015268 #18	CYTH3 (ENSSCUG00000015271) #19	RAC1 (ENSSCUG00000015275) #22	DAGLB (ENSSCUG00000015280) #23	KDELR2 (ENSSCUG00000015284) #24	OTOA (ENSSCUG00000015289)	METTL9 (ENSSCUG00000015301)	IGSF6 (ENSSCUG00000015305)	ENSSCUG00000015308	CDR2 (ENSSCUG00000015311)	POLR3E (ENSSCUG00000015320)	EEF2K (ENSSCUG00000015335)	ENSSCUG00000015345	ENSSCUG00000015351	VWA3A (ENSSCUG00000015365)	MOSMO (ENSSCUG00000015383)	PDZD9 (ENSSCUG00000015385)	UQCRC2 (ENSSCUG00000015387)
Anura	ANCESTRAL SPECIES	43	ENSGT00940000153560.b.b.a	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000157605 #17	ENSGT00390000015826 #15	ENSGT00940000155381 #14	ENSGT00940000154596.b.mb #18	ENSGT00940000155825 #19	ENSGT00390000014547	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393	ENSGT00940000159290	ENSGT00390000018266	ENSGT00940000154915	ENSGT00390000000237	ENSGT00390000017548.a
Frog	MODERN SPECIES	9	sdr42e2 (ENSXETG00000033324)	eef2k (ENSXETG00000016677)	polr3e (ENSXETG00000016663)	cdr2 (ENSXETG00000045179)	ENSXETG00000016661	mettl9 (ENSXETG00000016660)	ENSXETG00000046394	otoa (ENSXETG00000024067)	kdelr1 (ENSXETG00000027589) #24	pms2 (ENSXETG00000024066) #14	usp42 (ENSXETG00000024065) #18	ENSXETG00000036818	ENSXETG00000036251	cyth3 (ENSXETG00000024063) #19	ENSXETG00000036145	rac1 (ENSXETG00000048069) #22	daglb (ENSXETG00000031368) #23	ENSXETG00000047638	aldob (ENSXETG00000024058)	prpf18 (ENSXETG00000024057)	aimp2 (ENSXETG00000027596) #15	eif2ak1 (ENSXETG00000024055) #17	rsph10b (ENSXETG00000024054) #13	ccz1b (ENSXETG00000024053) #12	ocm1 (ENSXETG00000033720)	ocm4.3 (ENSXETG00000047928)	ENSXETG00000003921	lmtk2 (ENSXETG00000024039) #10	bhlha15 (ENSXETG00000032164) #9	tecpr1 (ENSXETG00000024038) #8	bri3 (ENSXETG00000024037) #7
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	11	ENSLLEG00000024873	ENSLLEG00000025028	ENSLLEG00000025286	ENSLLEG00000025316	ENSLLEG00000025575	ENSLLEG00000025601	LGALS1 (ENSLLEG00000025679)	SH3BP1 (ENSLLEG00000025727)	ENSLLEG00000025829	LGALS2 (ENSLLEG00000025979)	ENSLLEG00000026089	ELFN2 (ENSLLEG00000026126)	CYTH4 (ENSLLEG00000026146)	ENSLLEG00000026221	ENSLLEG00000026238	ENSLLEG00000026286 #22	ENSLLEG00000026314	SSTR3 (ENSLLEG00000026345)	ENSLLEG00000026354	ENSLLEG00000026374	TMPRSS6 (ENSLLEG00000026470)	ENSLLEG00000026729	MPST (ENSLLEG00000026824)	ENSLLEG00000026848	ENSLLEG00000026887	ENSLLEG00000026956	NCF4 (ENSLLEG00000027022)	ENSLLEG00000027084	PVALB (ENSLLEG00000027102)	IFT27 (ENSLLEG00000027138)	ENSLLEG00000027171
Leishan spiny toad	MODERN SPECIES	10	ENSLLEG00000019477	ENSLLEG00000018567 #12	ENSLLEG00000017930 #13	EIF2AK1 (ENSLLEG00000017579) #17	ENSLLEG00000017472	ENSLLEG00000017438	ENSLLEG00000017361	AIMP2 (ENSLLEG00000017247) #15	PMS2 (ENSLLEG00000017010) #14	USP42 (ENSLLEG00000016799) #18	CYTH3 (ENSLLEG00000016339) #19	ENSLLEG00000016305	ENSLLEG00000016140	ENSLLEG00000016104	ENSLLEG00000016077	ENSLLEG00000015890 #22	DAGLB (ENSLLEG00000015435) #23	KDELR2 (ENSLLEG00000015298) #24	ENSLLEG00000015227	OTOA (ENSLLEG00000015033)	ENSLLEG00000014964	METTL9 (ENSLLEG00000014917)	ENSLLEG00000014838	CDR2 (ENSLLEG00000028922)	POLR3E (ENSLLEG00000028808)	EEF2K (ENSLLEG00000028675)	SDR42E2 (ENSLLEG00000028529)	VWA3A (ENSLLEG00000028343)	ENSLLEG00000028311	ENSLLEG00000028282	ENSLLEG00000028271
Coelacanth	DUPLICATION
Coelacanth	MODERN SPECIES	2968												ENSLACG00000000281	ENSLACG00000002371	NCF4 (ENSLACG00000002960)	PVALB (ENSLACG00000004101)	ENSLACG00000022526 #22	rac2 (ENSLACG00000005531)	SSTR5 (ENSLACG00000006335)
Coelacanth	MODERN SPECIES	668				ENSLACG00000003101	pvalb3 (ENSLACG00000004235)	pvalb9 (ENSLACG00000006803)	ccz1 (ENSLACG00000007500) #12	ENSLACG00000008794 #13	PMS2 (ENSLACG00000009368) #14	AIMP2 (ENSLACG00000009694) #15	EIF2AK1 (ENSLACG00000010388) #17	ANKRD61 (ENSLACG00000010613) #16	USP42 (ENSLACG00000011343) #18	CYTH3 (ENSLACG00000012095) #19	ENSLACG00000013162 #20	RAC1 (ENSLACG00000013226) #22	DAGLB (ENSLACG00000013609) #23	KDELR2 (ENSLACG00000013988) #24	OTOA (ENSLACG00000014194)	METTL9 (ENSLACG00000014883)	mfsd13al (ENSLACG00000015117)	CDR2 (ENSLACG00000015260)	POLR3E (ENSLACG00000015514)