Bilateria	ANCESTRAL SPECIES																	ENSGT00940000153500 #22
Chordata	ANCESTRAL SPECIES																	ENSGT00940000153500 #22
Vertebrata	DUPLICATION
Vertebrata	DUPLICATION
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a #22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a #22
Euteleostomi	ANCESTRAL SPECIES	44	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000165760	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014547	ENSGT00940000153500.a.a #22	ENSGT00940000155205	ENSGT00940000160265	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393	ENSGT00940000159290	ENSGT00390000018266	ENSGT00940000154915
Sarcopterygii	ANCESTRAL SPECIES	51	ENSGT00940000165760	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014547	ENSGT00940000155205	ENSGT00940000160265	ENSGT00390000014156	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915	ENSGT00550000074840
Tetrapoda	ANCESTRAL SPECIES	24	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014547	ENSGT00940000159737	ENSGT00940000160865	ENSGT00940000155205	ENSGT00940000162038	ENSGT00390000014156	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915	ENSGT00390000000237
Amniota	ANCESTRAL SPECIES	11	ENSGT00940000165760	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00950000184989	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915	ENSGT00390000000237
Mammalia	ANCESTRAL SPECIES	11	ENSGT00940000165760	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00950000184989	ENSGT00940000155825 #20	ENSGT00390000014547	ENSGT00960000187139	ENSGT00390000014156	ENSGT01070000254102	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915	ENSGT00390000000237
Theria	ANCESTRAL SPECIES	10	ENSGT00940000158475 #10	ENSGT00940000165760	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00950000184989	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915	ENSGT00390000000237
Eutheria	ANCESTRAL SPECIES	22	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00950000184989	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.A #33	ENSGT01050000244815.B.a.b.b	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35	ENSGT00950000182960.a.a.a.a.b.rb #36	ENSGT00950000182960.a.a.a.b ##36	ENSGT00390000015109 #37	ENSGT00940000157099
Boreoeutheria	ANCESTRAL SPECIES	12	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000170143	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00960000187139	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35
Euarchontoglires	ANCESTRAL SPECIES	12	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000170143	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00960000187139	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35
Euarchontoglires_A	ANCESTRAL SPECIES	12	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00960000187139	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35
Glires	ANCESTRAL SPECIES	11	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00960000187139	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35
Rodentia	ANCESTRAL SPECIES	11	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00960000187139	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35
Rodentia_B	ANCESTRAL SPECIES	29	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35	ENSGT00950000182960.a.a.a.a.b.rb.i #36
Myomorpha	ANCESTRAL SPECIES	31	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35	ENSGT00950000182960.a.a.a.a.b.rb.i #36
Muroidea	ANCESTRAL SPECIES	51	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35	ENSGT00950000182960.a.a.a.a.b.rb.i #36
Muroidea_A	ANCESTRAL SPECIES	27	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35	ENSGT00950000182960.a.a.a.a.b.rb.i #36
Murinae	ANCESTRAL SPECIES	28	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35	ENSGT00950000182960.a.a.a.a.b.rb.i #36	ENSGT00390000015109 #37
Mus	ANCESTRAL SPECIES	17	ENSGT00940000153560.b.b.a	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35	ENSGT00950000182960.a.a.a.a.b.rb.i #36	ENSGT00390000015109 #37
Mus_A	ANCESTRAL SPECIES	6	ENSGT00940000153560.b.b.a	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A.q.a #31	ENSGT00940000154173.A.r #32	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35	ENSGT00950000182960.a.a.a.a.b.rb.i #36
Mus_B	ANCESTRAL SPECIES	4	ENSGT00940000153560.b.b.a	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156.e	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A.q.a #31	ENSGT00940000154173.A.r #32	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35	ENSGT00950000182960.a.a.a.a.b.rb.i #36
Mus_C	ANCESTRAL SPECIES	4	ENSGT01060000248591.a.a.a.a	ENSGT00940000153560.b.b.a	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A.q.a #31	ENSGT00940000154173.A.r #32	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35	ENSGT00950000182960.a.a.a.a.b.rb.i #36
spretus	MODERN SPECIES	14	Bri3 (MGP_SPRETEiJ_G0029001) #7	Tecpr1 (MGP_SPRETEiJ_G0029000) #8	Bhlha15 (MGP_SPRETEiJ_G0028999) #9	Lmtk2 (MGP_SPRETEiJ_G0028998) #10	Ocm (MGP_SPRETEiJ_G0028997) #11	Ccz1 (MGP_SPRETEiJ_G0028996) #12	Rsph10b (MGP_SPRETEiJ_G0028995) #13	MGP_SPRETEiJ_G0028994 #14	Pms2 (MGP_SPRETEiJ_G0028993) #15	Aimp2 (MGP_SPRETEiJ_G0028992) #16	MGP_SPRETEiJ_G0028991 #17	Eif2ak1 (MGP_SPRETEiJ_G0028990) #18	Usp42 (MGP_SPRETEiJ_G0028989) #19	Cyth3 (MGP_SPRETEiJ_G0028988) #20	MGP_SPRETEiJ_G0028987 #21	Rac1 (MGP_SPRETEiJ_G0028986) #22	Daglb (MGP_SPRETEiJ_G0028985) #23	Kdelr2 (MGP_SPRETEiJ_G0028984) #24	Grid2ip (MGP_SPRETEiJ_G0028983) #25	Zdhhc4 (MGP_SPRETEiJ_G0028982) #26	Ints15 (MGP_SPRETEiJ_G0028981) #27	MGP_SPRETEiJ_G0028980 #28	Zfp316 (MGP_SPRETEiJ_G0028979) #29	Zfp12 (MGP_SPRETEiJ_G0028978) #30	Spdye4a (MGP_SPRETEiJ_G0028977) #31	MGP_SPRETEiJ_G0028976 #32	Rbak (MGP_SPRETEiJ_G0028975) #33	Rnf216 (MGP_SPRETEiJ_G0028974) #34	Fscn1 (MGP_SPRETEiJ_G0028973) #35	MGP_SPRETEiJ_G0028972 #36	Fbxl18 (MGP_SPRETEiJ_G0028971) #37
Mouse	MODERN SPECIES	14	Bri3 (ENSMUSG00000047843) #7	Tecpr1 (ENSMUSG00000066621) #8	Bhlha15 (ENSMUSG00000052271) #9	Lmtk2 (ENSMUSG00000038970) #10	Ocm (ENSMUSG00000029618) #11	Ccz1 (ENSMUSG00000029617) #12	Rsph10b (ENSMUSG00000075569) #13	Pms2 (ENSMUSG00000079109) #14	Aimp2 (ENSMUSG00000029610) #16	Ankrd61 (ENSMUSG00000029607) #17	Eif2ak1 (ENSMUSG00000029613) #18	Usp42 (ENSMUSG00000051306) #19	Cyth3 (ENSMUSG00000018001) #20	Fam220a (ENSMUSG00000083012)	Fam220a (ENSMUSG00000118332)	Rac1 (ENSMUSG00000001847) #22	Daglb (ENSMUSG00000039206) #23	Kdelr2 (ENSMUSG00000079111) #24	Grid2ip (ENSMUSG00000010825) #25	Zdhhc4 (ENSMUSG00000001844) #26	Ints15 (ENSMUSG00000039244) #27	Zfp853 (ENSMUSG00000093910) #28	Zfp316 (ENSMUSG00000046658) #29	Zfp12 (ENSMUSG00000029587) #30	Spdye4a (ENSMUSG00000039296) #31	Spdye4b (ENSMUSG00000029586) ##31	Rbak (ENSMUSG00000061898) #33	Or10ah1-ps1 (ENSMUSG00000090981)	Rnf216 (ENSMUSG00000045078) #34	Fscn1 (ENSMUSG00000029581) #35	Actb (ENSMUSG00000029580) #36
Ryukyu mouse	MODERN SPECIES	14	Tecpr1 (MGP_CAROLIEiJ_G0027997) #8	Bhlha15 (MGP_CAROLIEiJ_G0027996) #9	Lmtk2 (MGP_CAROLIEiJ_G0027995) #10	Ocm (MGP_CAROLIEiJ_G0027994) #11	Fpr-rs3 (MGP_CAROLIEiJ_G0027993)	Ccz1 (MGP_CAROLIEiJ_G0027992) #12	Rsph10b (MGP_CAROLIEiJ_G0027991) #13	MGP_CAROLIEiJ_G0027990 #14	Pms2 (MGP_CAROLIEiJ_G0027989) #14	Aimp2 (MGP_CAROLIEiJ_G0027988) #16	Ankrd61 (MGP_CAROLIEiJ_G0027987) #17	Eif2ak1 (MGP_CAROLIEiJ_G0027986) #18	Usp42 (MGP_CAROLIEiJ_G0027985) #19	Cyth3 (MGP_CAROLIEiJ_G0027984) #20	MGP_CAROLIEiJ_G0027983	Rac1 (MGP_CAROLIEiJ_G0027982) #22	Daglb (MGP_CAROLIEiJ_G0027981) #23	Kdelr2 (MGP_CAROLIEiJ_G0027980) #24	Grid2ip (MGP_CAROLIEiJ_G0027979) #25	Zdhhc4 (MGP_CAROLIEiJ_G0027978) #26	Ints15 (MGP_CAROLIEiJ_G0027977) #27	MGP_CAROLIEiJ_G0027976 #28	Zfp316 (MGP_CAROLIEiJ_G0027975) #29	Zfp12 (MGP_CAROLIEiJ_G0027974) #30	Spdye4a (MGP_CAROLIEiJ_G0027973) #31	MGP_CAROLIEiJ_G0027972 #32	Rbak (MGP_CAROLIEiJ_G0027971) #33	Rnf216 (MGP_CAROLIEiJ_G0027970) #34	Fscn1 (MGP_CAROLIEiJ_G0027969) #35	MGP_CAROLIEiJ_G0027968 #36	Fbxl18 (MGP_CAROLIEiJ_G0027967) #37
Shrew mouse	MODERN SPECIES	15	Bri3 (MGP_PahariEiJ_G0024569) #7	Tecpr1 (MGP_PahariEiJ_G0024568) #8	Bhlha15 (MGP_PahariEiJ_G0024567) #9	Lmtk2 (MGP_PahariEiJ_G0024566) #10	Ocm (MGP_PahariEiJ_G0024565) #11	Ccz1 (MGP_PahariEiJ_G0024564) #12	Rsph10b (MGP_PahariEiJ_G0024563) #13	MGP_PahariEiJ_G0024562	Pms2 (MGP_PahariEiJ_G0024561) #14	Aimp2 (MGP_PahariEiJ_G0024560) #16	Ankrd61 (MGP_PahariEiJ_G0024559) #17	Eif2ak1 (MGP_PahariEiJ_G0024558) #18	Usp42 (MGP_PahariEiJ_G0024557) #19	Cyth3 (MGP_PahariEiJ_G0024556) #20	MGP_PahariEiJ_G0024555	Rac1 (MGP_PahariEiJ_G0024554) #22	Daglb (MGP_PahariEiJ_G0024553) #23	Kdelr2 (MGP_PahariEiJ_G0024552) #24	Grid2ip (MGP_PahariEiJ_G0024551) #25	Zdhhc4 (MGP_PahariEiJ_G0024550) #26	Ints15 (MGP_PahariEiJ_G0024549) #27	MGP_PahariEiJ_G0024548 #28	Zfp316 (MGP_PahariEiJ_G0024547) #29	Zfp12 (MGP_PahariEiJ_G0024546) #30	MGP_PahariEiJ_G0024545 #31	MGP_PahariEiJ_G0024544 #31	Rbak (MGP_PahariEiJ_G0024543) #33	Rnf216 (MGP_PahariEiJ_G0024542) #34	Fscn1 (MGP_PahariEiJ_G0024541) #35	MGP_PahariEiJ_G0024540 #36	Fbxl18 (MGP_PahariEiJ_G0024539) #37
Rat	MODERN SPECIES	3	Bri3 (ENSRNOG00000001009) #7	Tecpr1 (ENSRNOG00000001010) #8	Bhlha15 (ENSRNOG00000025164) #9	Lmtk2 (ENSRNOG00000025155) #10	Ocm (ENSRNOG00000001031) #11	Ccz1b (ENSRNOG00000001032) #12	Rsph10b (ENSRNOG00000001036) #13	Pms2 (ENSRNOG00000001040) #14	Aimp2 (ENSRNOG00000001044) #16	Eif2ak1 (ENSRNOG00000001050) #18	Ankrd61 (ENSRNOG00000001048) #17	Usp42 (ENSRNOG00000001059) #19	Cyth3 (ENSRNOG00000001065) #20	Fam220a (ENSRNOG00000024605)	ENSRNOG00000065731	Rac1 (ENSRNOG00000001068) #22	Daglb (ENSRNOG00000001079) #23	Kdelr2 (ENSRNOG00000001083) #24	Grid2ip (ENSRNOG00000030927) #25	Zdhhc4 (ENSRNOG00000051699) #26	Ints15 (ENSRNOG00000024567) #27	Zfp853 (ENSRNOG00000030579) #28	Zfp316 (ENSRNOG00000001094) #29	Zfp12 (ENSRNOG00000006958) #30	Spdye4 (ENSRNOG00000058563) #31	Rbak (ENSRNOG00000001099) #33	AABR07072272.1 (ENSRNOG00000029560)	LOC103693627 (ENSRNOG00000024527)	Rnf216 (ENSRNOG00000001101) #34	Fscn1 (ENSRNOG00000056585) #35	Actb (ENSRNOG00000034254) #36
Cricetidae	ANCESTRAL SPECIES	27	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713.g #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35	ENSGT00950000182960.a.a.a.a.b.rb.i #36
Cricetidae_B	ANCESTRAL SPECIES	46	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713.g #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35	ENSGT00950000182960.a.a.a.a.b.rb.i #36
Prairie vole	MODERN SPECIES	110	Baiap2l1 (ENSMOCG00000002763)	Bri3 (ENSMOCG00000007653) #7	Tecpr1 (ENSMOCG00000021771) #8	Lmtk2 (ENSMOCG00000019505) #10	Ocm (ENSMOCG00000005057) #11	Ccz1 (ENSMOCG00000018777) #12	Rsph10b (ENSMOCG00000018506) #13	ENSMOCG00000010177 #14	Aimp2 (ENSMOCG00000014024) #16	Ankrd61 (ENSMOCG00000005764) #17	Eif2ak1 (ENSMOCG00000006374) #18	Usp42 (ENSMOCG00000012009) #19	Cyth3 (ENSMOCG00000000807) #20	ENSMOCG00000019877	ENSMOCG00000013507	Rac1 (ENSMOCG00000016374) #22	Daglb (ENSMOCG00000000178) #23	Kdelr2 (ENSMOCG00000013926) #24	Grid2ip (ENSMOCG00000016662) #25	Zdhhc4 (ENSMOCG00000015434) #26	Ints15 (ENSMOCG00000007513) #27	Zfp316 (ENSMOCG00000009050) #29	Zfp12 (ENSMOCG00000011472) #30	ENSMOCG00000014198 #31	ENSMOCG00000016394 #31	Rbak (ENSMOCG00000019516) #33	Or10ah1-ps1 (ENSMOCG00000006986)	Rnf216 (ENSMOCG00000011081) #34	Fscn1 (ENSMOCG00000001115) #35	Actb (ENSMOCG00000004137) #36	Fbxl18 (ENSMOCG00000007883) #37
Northern American deer mouse	MODERN SPECIES	15	Bhlha15 (ENSPEMG00000009777) #9	Lmtk2 (ENSPEMG00000002227) #10	Ocm (ENSPEMG00000023404) #11	Ccz1 (ENSPEMG00000007600) #12	Rsph10b (ENSPEMG00000017010) #13	Pms2 (ENSPEMG00000009009) #14	Aimp2 (ENSPEMG00000023504) #16	Ankrd61 (ENSPEMG00000023381) #17	Eif2ak1 (ENSPEMG00000023964) #18	Usp42 (ENSPEMG00000023210) #19	Cyth3 (ENSPEMG00000023607) #20	ENSPEMG00000024425	ENSPEMG00000024276	ENSPEMG00000028777	ENSPEMG00000024532	Rac1 (ENSPEMG00000023796) #22	Daglb (ENSPEMG00000022539) #23	Kdelr2 (ENSPEMG00000023934) #24	Grid2ip (ENSPEMG00000021559) #25	ENSPEMG00000026127	ENSPEMG00000022156 #26	ENSPEMG00000027536	Ints15 (ENSPEMG00000021833) #27	Zfp853 (ENSPEMG00000022955) #28	ENSPEMG00000027296 #29	Zfp12 (ENSPEMG00000023887) #30	Rbak (ENSPEMG00000018899) #33	ENSPEMG00000029392	ENSPEMG00000025613	Zfp157 (ENSPEMG00000027605)	ENSPEMG00000029023
Cricetinae	ANCESTRAL SPECIES	19	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713.g #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35	ENSGT00950000182960.a.a.a.a.b.rb.i #36	ENSGT00390000015109 #37
Chinese hamster chok1gshd	MODERN SPECIES	130	Bri3 (ENSCGRG00001003030) #7	Tecpr1 (ENSCGRG00001010075) #8	Bhlha15 (ENSCGRG00001003090) #9	Lmtk2 (ENSCGRG00001005742) #10	Ocm (ENSCGRG00001020230) #11	Ccz1 (ENSCGRG00001021911) #12	Rsph10b (ENSCGRG00001001878) #13	Pms2 (ENSCGRG00001007988) #14	AIMP2 (ENSCGRG00001017144) #16	Eif2ak1 (ENSCGRG00001018205) #18	Ankrd61 (ENSCGRG00001021200) #17	Usp42 (ENSCGRG00001024720) #19	Cyth3 (ENSCGRG00001002265) #20	ENSCGRG00001022741	ENSCGRG00001016103	Rac1 (ENSCGRG00001014453) #22	Daglb (ENSCGRG00001016453) #23	Kdelr2 (ENSCGRG00001012223) #24	Grid2ip (ENSCGRG00001021698) #25	Zdhhc4 (ENSCGRG00001023712) #26	Ints15 (ENSCGRG00001024717) #27	Zfp853 (ENSCGRG00001024977) #28	Zfp316 (ENSCGRG00001003920) #29	Zfp12 (ENSCGRG00001012589) #30	ENSCGRG00001018273 #31	ENSCGRG00001012184 #31	Rbak (ENSCGRG00001014657) #33	Or10ah1-ps1 (ENSCGRG00001001645)	Rnf216 (ENSCGRG00001010303) #34	Fscn1 (ENSCGRG00001011181) #35	Actb (ENSCGRG00001015781) #36
Golden Hamster	MODERN SPECIES	712	Baiap2l1 (ENSMAUG00000008280)	Bri3 (ENSMAUG00000000701) #7	Tecpr1 (ENSMAUG00000008072) #8	Lmtk2 (ENSMAUG00000014353) #10	Ocm (ENSMAUG00000016041) #11	Ccz1 (ENSMAUG00000004705) #12	ENSMAUG00000011345 #13	ENSMAUG00000014015 #14	Aimp2 (ENSMAUG00000008325) #16	Eif2ak1 (ENSMAUG00000020353) #18	Ankrd61 (ENSMAUG00000007269) #17	Usp42 (ENSMAUG00000014275) #19	Cyth3 (ENSMAUG00000022079) #20	ENSMAUG00000016388	ENSMAUG00000004039	Rac1 (ENSMAUG00000017557) #22	Daglb (ENSMAUG00000020489) #23	Kdelr2 (ENSMAUG00000019623) #24	Grid2ip (ENSMAUG00000014248) #25	Zdhhc4 (ENSMAUG00000012510) #26	Ints15 (ENSMAUG00000018145) #27	Zfp853 (ENSMAUG00000016640) #28	Zfp316 (ENSMAUG00000006651) #29	Zfp12 (ENSMAUG00000009697) #30	ENSMAUG00000014029 #31	Rbak (ENSMAUG00000015743) #33	Or10ah1-ps1 (ENSMAUG00000006192)	Rnf216 (ENSMAUG00000009736) #34	Fscn1 (ENSMAUG00000021320) #35	Actb (ENSMAUG00000008763) #36	Fbxl18 (ENSMAUG00000012173) #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	1850	Bri3 (ENSNGAG00000013902) #7	Tecpr1 (ENSNGAG00000013589) #8	Bhlha15 (ENSNGAG00000011836) #9	Lmtk2 (ENSNGAG00000012019) #10	Ocm (ENSNGAG00000008617) #11	Ccz1 (ENSNGAG00000004053) #12	Rsph10b (ENSNGAG00000023731) #13	ENSNGAG00000010571 #14	Aimp2 (ENSNGAG00000019038) #16	Ankrd61 (ENSNGAG00000017533) #17	Eif2ak1 (ENSNGAG00000022444) #18	Usp42 (ENSNGAG00000007453) #19	Cyth3 (ENSNGAG00000019742) #20	ENSNGAG00000024023	ENSNGAG00000022224	Rac1 (ENSNGAG00000011813) #22	Daglb (ENSNGAG00000022378) #23	Kdelr2 (ENSNGAG00000023321) #24	Grid2ip (ENSNGAG00000023413) #25	Zdhhc4 (ENSNGAG00000001133) #26	Ints15 (ENSNGAG00000011823) #27	Zfp853 (ENSNGAG00000023160) #28	Zfp316 (ENSNGAG00000022662) #29	Zfp12 (ENSNGAG00000016497) #30
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	130	Nudt1 (ENSJJAG00000018201)	Snx8 (ENSJJAG00000019543)	Nptx2 (ENSJJAG00000011310)	Baiap2l1 (ENSJJAG00000010366)	Bri3 (ENSJJAG00000022483) #7	Tecpr1 (ENSJJAG00000013577) #8	Lmtk2 (ENSJJAG00000013256) #10	Ocm (ENSJJAG00000018779) #11	Ccz1 (ENSJJAG00000009367) #12	ENSJJAG00000019007 #14	Aimp2 (ENSJJAG00000023308) #16	Eif2ak1 (ENSJJAG00000007006) #18	Ankrd61 (ENSJJAG00000018483) #17	ENSJJAG00000016570 #19	Cyth3 (ENSJJAG00000018590) #20	ENSJJAG00000011580 #22	Daglb (ENSJJAG00000013208) #23	Kdelr2 (ENSJJAG00000009130) #24	Grid2ip (ENSJJAG00000023779) #25	Zdhhc4 (ENSJJAG00000004494) #26	Ints15 (ENSJJAG00000021512) #27	Zfp853 (ENSJJAG00000023526) #28	ENSJJAG00000013583 #29	Zfp12 (ENSJJAG00000002331) #30	ENSJJAG00000013312 #31	Rbak (ENSJJAG00000015404) #33
Lesser Egyptian jerboa	MODERN SPECIES	52	Pigk (ENSJJAG00000023897)	St6galnac5 (ENSJJAG00000017065)	St6galnac3 (ENSJJAG00000001065)	Asb17 (ENSJJAG00000004726)	Msh4 (ENSJJAG00000020666)	Rabggtb (ENSJJAG00000022754)	Acadm (ENSJJAG00000015548)	Slc44a5 (ENSJJAG00000003214)	Lhx8 (ENSJJAG00000018516)	ENSJJAG00000005103	Cryz (ENSJJAG00000000662)	ENSJJAG00000009791	Tnni3k (ENSJJAG00000021052)	ENSJJAG00000010776	ENSJJAG00000018649	ENSJJAG00000013506 #22	ENSJJAG00000010520	ENSJJAG00000017586	ENSJJAG00000018698	Hecw2 (ENSJJAG00000022806)	Gtf3c3 (ENSJJAG00000004649)	Pgap1 (ENSJJAG00000009924)	Ankrd44 (ENSJJAG00000016107)	ENSJJAG00000018305	Sf3b1 (ENSJJAG00000010903)	Coq10b (ENSJJAG00000020646)	ENSJJAG00000016713	ENSJJAG00000012025	ENSJJAG00000009865	Rftn2 (ENSJJAG00000002223)	Mars2 (ENSJJAG00000023940)
Kangaroo rat	MODERN SPECIES	387	ENSDORG00000027487	Tecpr1 (ENSDORG00000003936) #8	Bhlha15 (ENSDORG00000026874) #9	Lmtk2 (ENSDORG00000003934) #10	Ocm (ENSDORG00000012852) #11	Ccz1 (ENSDORG00000013281) #12	ENSDORG00000028983	Rsph10b (ENSDORG00000027674) #13	ENSDORG00000026010 #14	Aimp2 (ENSDORG00000029049) #16	Ankrd61 (ENSDORG00000016272) #17	Eif2ak1 (ENSDORG00000016271) #18	ENSDORG00000025319 #19	Cyth3 (ENSDORG00000024524) #20	ENSDORG00000028442	Rac1 (ENSDORG00000014388) #22	Daglb (ENSDORG00000002646) #23	Kdelr2 (ENSDORG00000012464) #24	Grid2ip (ENSDORG00000001187) #25	Zdhhc4 (ENSDORG00000025226) #26	Ints15 (ENSDORG00000015054) #27	ENSDORG00000023712	Zfp316 (ENSDORG00000023753) #29	Zfp12 (ENSDORG00000005742) #30	ENSDORG00000025580 #31	Rbak (ENSDORG00000023872) #33	Rnf216 (ENSDORG00000010835) #34	Fscn1 (ENSDORG00000025729) #35	Actb (ENSDORG00000010079) #36	Fbxl18 (ENSDORG00000010081) #37	Tnrc18 (ENSDORG00000029645)
Rodentia_A	ANCESTRAL SPECIES	10	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35	ENSGT00950000182960.a.a.a.a.b.rb.i #36
Hystricomorpha	ANCESTRAL SPECIES	17	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825.h.a #20	ENSGT00390000014156	ENSGT00940000155825.h.b #20	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00550000074913	ENSGT00940000163734	ENSGT00940000156614.b	ENSGT00940000162164	ENSGT00940000158717	ENSGT00950000183060.a.a	ENSGT00940000163679
Naked mole-rat female	MODERN SPECIES		ENSHGLG00000013637	ENSHGLG00000020676	ENSHGLG00000009254 #11	ENSHGLG00000007267 #12	ENSHGLG00000010064 #13	ENSHGLG00000038861	PMS2 (ENSHGLG00000007741) #14	AIMP2 (ENSHGLG00000041958) #16	ANKRD61 (ENSHGLG00000005518) #17	EIF2AK1 (ENSHGLG00000015194) #18	ENSHGLG00000035813	USP42 (ENSHGLG00000018062) #19	ENSHGLG00000017988 #20	ENSHGLG00000041754	ENSHGLG00000040110	RAC1 (ENSHGLG00000009964) #22	DAGLB (ENSHGLG00000007996) #23	KDELR2 (ENSHGLG00000006270) #24	GRID2IP (ENSHGLG00000009097) #25	ZDHHC4 (ENSHGLG00000006221) #26	INTS15 (ENSHGLG00000012729) #27	ENSHGLG00000044919	ZNF853 (ENSHGLG00000043485) #28	ZNF316 (ENSHGLG00000006683) #29	ENSHGLG00000049211	ENSHGLG00000014390 #30	ENSHGLG00000015253	ENSHGLG00000048380	ENSHGLG00000015038	ENSHGLG00000015019	ENSHGLG00000038095
Hystricomorpha_a	ANCESTRAL SPECIES	16	ENSGT00940000153560.b.b.a	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825.h.a #20	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00550000074913	ENSGT00940000163734	ENSGT00940000156614.b	ENSGT00940000162164	ENSGT00940000158717	ENSGT00950000183060.a.a	ENSGT00940000163679
Guinea pig	MODERN SPECIES	30	BRI3 (ENSCPOG00000025281) #7	TECPR1 (ENSCPOG00000010430) #8	BHLHA15 (ENSCPOG00000033368) #9	LMTK2 (ENSCPOG00000009408) #10	ENSCPOG00000031560	ENSCPOG00000011911 #11	ENSCPOG00000014787 #12	ENSCPOG00000019836 #13	PMS2 (ENSCPOG00000000555) #14	AIMP2 (ENSCPOG00000014855) #16	EIF2AK1 (ENSCPOG00000014860) #18	ANKRD61 (ENSCPOG00000014869) #17	ENSCPOG00000013717 #19	CYTH3 (ENSCPOG00000010827) #20	ENSCPOG00000031545	RAC1 (ENSCPOG00000008590) #22	DAGLB (ENSCPOG00000008596) #23	KDELR2 (ENSCPOG00000036190) #24	GRID2IP (ENSCPOG00000026013) #25	ZDHHC4 (ENSCPOG00000005689) #26	INTS15 (ENSCPOG00000002390) #27	ZNF853 (ENSCPOG00000035682) #28	ZNF316 (ENSCPOG00000008777) #29	ZNF12 (ENSCPOG00000038275) #30	ENSCPOG00000034927 #19	ENSCPOG00000019496	ENSCPOG00000000197	GRIFIN (ENSCPOG00000027408)	ENSCPOG00000024469	ENSCPOG00000010266	ENSCPOG00000031410
Hystricomorpha_b	ANCESTRAL SPECIES	55	ENSGT00940000153560.b.b.a	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00940000155825.h.b #20	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00550000074913	ENSGT00940000163734	ENSGT00940000156614.b	ENSGT00940000162164	ENSGT00940000158717	ENSGT00950000183060.a.a	ENSGT00940000163679
Long-tailed chinchilla	MODERN SPECIES	167	TECPR1 (ENSCLAG00000006941) #8	BHLHA15 (ENSCLAG00000006581) #9	LMTK2 (ENSCLAG00000005806) #10	ENSCLAG00000007617 #11	ENSCLAG00000006812 #12	ENSCLAG00000004477 #13	ENSCLAG00000009853 #14	AIMP2 (ENSCLAG00000009734) #16	ANKRD61 (ENSCLAG00000008441) #17	EIF2AK1 (ENSCLAG00000007600) #18	ENSCLAG00000006764	USP42 (ENSCLAG00000004585) #19	ENSCLAG00000007268 #20	ENSCLAG00000007013 #20	ENSCLAG00000006763	RAC1 (ENSCLAG00000009375) #22	ENSCLAG00000014915	DAGLB (ENSCLAG00000010405) #23	KDELR2 (ENSCLAG00000008164) #24	GRID2IP (ENSCLAG00000004690) #25	ZDHHC4 (ENSCLAG00000005882) #26	INTS15 (ENSCLAG00000005799) #27	ZNF853 (ENSCLAG00000005585) #28	ZNF316 (ENSCLAG00000004965) #29	ZNF12 (ENSCLAG00000007714) #30	EIF3B (ENSCLAG00000006140)	ENSCLAG00000005193	CHST12 (ENSCLAG00000005658)	GRIFIN (ENSCLAG00000005569)	LFNG (ENSCLAG00000005347)	TTYH3 (ENSCLAG00000010104)
Degu	DUPLICATION
Degu	DUPLICATION
Degu	MODERN SPECIES	91	PRKCSH (ENSODEG00000015657)	ELAVL3 (ENSODEG00000015790)	ZNF653 (ENSODEG00000015477)	ECSIT (ENSODEG00000016279)	CNN1 (ENSODEG00000016009)	ENSODEG00000015688	ACP5 (ENSODEG00000015797)	ENSODEG00000020329	ENSODEG00000015977	ENSODEG00000020296	VAV1 (ENSODEG00000015478)	TRIP10 (ENSODEG00000015929)	GPR108 (ENSODEG00000016288)	C3 (ENSODEG00000015506)	TNFSF14 (ENSODEG00000015436)	ENSODEG00000020289 #22	ENSODEG00000015175	TUBB4A (ENSODEG00000015772)	ENSODEG00000015746	CRB3 (ENSODEG00000015295)	SLC25A23 (ENSODEG00000014916)	SLC25A41 (ENSODEG00000015990)	KHSRP (ENSODEG00000015021)	ENSODEG00000015969	GTF2F1 (ENSODEG00000014900)	PSPN (ENSODEG00000014761)	ALKBH7 (ENSODEG00000015141)	CLPP (ENSODEG00000015485)	ACER1 (ENSODEG00000015726)	MLLT1 (ENSODEG00000014883)	ENSODEG00000015920
Degu	MODERN SPECIES	93	IL1F10 (ENSODEG00000005739)	IL36RN (ENSODEG00000006210)	ENSODEG00000007018	IL36A (ENSODEG00000005630)	ENSODEG00000019269	IL1B (ENSODEG00000006687)	CKAP2L (ENSODEG00000005587)	SLC20A1 (ENSODEG00000006024)	CHCHD5 (ENSODEG00000005670)	POLR1B (ENSODEG00000005501)	TTL (ENSODEG00000007061)	ENSODEG00000007009	ZC3H6 (ENSODEG00000009099)	ENSODEG00000005806	ZC3H8 (ENSODEG00000006594)	ENSODEG00000006298 #22	FBLN7 (ENSODEG00000008566)	TMEM87B (ENSODEG00000006134)	MERTK (ENSODEG00000005950)	BCL2L11 (ENSODEG00000006911)	BUB1 (ENSODEG00000006522)	ENSODEG00000006360	ENSODEG00000005851	ENSODEG00000006127	MALL (ENSODEG00000006386)	MAL (ENSODEG00000006405)	MRPS5 (ENSODEG00000006937)	ZNF2 (ENSODEG00000005837)	PROM2 (ENSODEG00000006749)	KCNIP3 (ENSODEG00000007993)	FAHD2A (ENSODEG00000006155)
Degu	MODERN SPECIES	72	BAIAP2L1 (ENSODEG00000010504)	BRI3 (ENSODEG00000010514) #7	TECPR1 (ENSODEG00000011578) #8	LMTK2 (ENSODEG00000012233) #10	ENSODEG00000011077 #11	ENSODEG00000011251 #12	ENSODEG00000012084 #14	ENSODEG00000011718 #16	EIF2AK1 (ENSODEG00000011509) #18	ENSODEG00000019832	ENSODEG00000012213 #19	ENSODEG00000012217	CYTH3 (ENSODEG00000011710) #20	ENSODEG00000010243	ENSODEG00000010724	ENSODEG00000010508 #22	DAGLB (ENSODEG00000010099) #23	KDELR2 (ENSODEG00000009858) #24	GRID2IP (ENSODEG00000010098) #25	INTS15 (ENSODEG00000010510) #27	ZNF316 (ENSODEG00000011271) #29	ENSODEG00000010214 #30	ENSODEG00000010666 #30	EIF3B (ENSODEG00000012851)	CHST12 (ENSODEG00000019997)	GRIFIN (ENSODEG00000012470)	LFNG (ENSODEG00000009962)	TTYH3 (ENSODEG00000009504)	ENSODEG00000012047	GNA12 (ENSODEG00000011099)	CARD11 (ENSODEG00000009936)
Sciuridae	ANCESTRAL SPECIES	9	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23
Marmotini	ANCESTRAL SPECIES	85	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00940000154173.A.i.a.b #31
Alpin marmot	MODERN SPECIES	77	TECPR1 (ENSMMMG00000006293) #8	BHLHA15 (ENSMMMG00000006320) #9	LMTK2 (ENSMMMG00000006321) #10	ENSMMMG00000006340 #11	ENSMMMG00000006346 #12	ENSMMMG00000006369 #13	ENSMMMG00000006406 #14	AIMP2 (ENSMMMG00000006437) #16	EIF2AK1 (ENSMMMG00000006468) #18	ANKRD61 (ENSMMMG00000006880) #17	USP42 (ENSMMMG00000006895) #19	CYTH3 (ENSMMMG00000006920) #20	FAM220A (ENSMMMG00000006949)	ENSMMMG00000006952	ENSMMMG00000006962	RAC1 (ENSMMMG00000006966) #22	DAGLB (ENSMMMG00000006987) #23	ENSMMMG00000007019 #31	GNA12 (ENSMMMG00000007029)	CARD11 (ENSMMMG00000007041)	SDK1 (ENSMMMG00000007072)	FOXK1 (ENSMMMG00000007197)	AP5Z1 (ENSMMMG00000007212)	RADIL (ENSMMMG00000007258)	PAPOLB (ENSMMMG00000007296)	MMD2 (ENSMMMG00000007303)	WIPI2 (ENSMMMG00000007313)	SLC29A4 (ENSMMMG00000007333)	TNRC18 (ENSMMMG00000007352)	FBXL18 (ENSMMMG00000007533) #37	ACTB (ENSMMMG00000007553) #36
Marmotini_b	ANCESTRAL SPECIES	131	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826.w #16	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00940000154173.A.i.a.b #31
Squirrel	MODERN SPECIES	350	TECPR1 (ENSSTOG00000009733) #8	BHLHA15 (ENSSTOG00000009728) #9	LMTK2 (ENSSTOG00000009706) #10	ENSSTOG00000010731 #11	ENSSTOG00000006071 #12	ENSSTOG00000026631 #13	ENSSTOG00000006111 #14	ENSSTOG00000029156 #16	ANKRD61 (ENSSTOG00000009292) #17	EIF2AK1 (ENSSTOG00000009274) #18	USP42 (ENSSTOG00000001211) #19	CYTH3 (ENSSTOG00000014555) #20	ENSSTOG00000033124	FAM220A (ENSSTOG00000033953)	ENSSTOG00000028517	RAC1 (ENSSTOG00000006784) #22	DAGLB (ENSSTOG00000006792) #23
Arctic ground squirrel	MODERN SPECIES	300	TECPR1 (ENSUPAG00010006865) #8	BHLHA15 (ENSUPAG00010006858) #9	LMTK2 (ENSUPAG00010006825) #10	ENSUPAG00010006809 #11	ENSUPAG00010006347 #12	ENSUPAG00010006316 #13	PMS2 (ENSUPAG00010006292) #14	ENSUPAG00010006282 #16	ANKRD61 (ENSUPAG00010006253) #17	EIF2AK1 (ENSUPAG00010006214) #18	USP42 (ENSUPAG00010006190) #19	CYTH3 (ENSUPAG00010006163) #20	FAM220A (ENSUPAG00010006158)	ENSUPAG00010006155	ENSUPAG00010006147	RAC1 (ENSUPAG00010006103) #22	DAGLB (ENSUPAG00010006087) #23	ENSUPAG00010006076 #31
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	9	ENSSVLG00005020936	TECPR1 (ENSSVLG00005020896) #8	BHLHA15 (ENSSVLG00005020870) #9	LMTK2 (ENSSVLG00005020820) #10	ENSSVLG00005020777 #11	ENSSVLG00005020724 #12	ENSSVLG00005020563 #13	PMS2 (ENSSVLG00005020367) #14	ENSSVLG00005020254 #16	ANKRD61 (ENSSVLG00005020185) #17	EIF2AK1 (ENSSVLG00005020146) #18	ENSSVLG00005020095 #19	CYTH3 (ENSSVLG00005020027) #20	ENSSVLG00005020002	ENSSVLG00005019953	ENSSVLG00005019810 #22	DAGLB (ENSSVLG00005019691) #23	GNA12 (ENSSVLG00005019630)	CARD11 (ENSSVLG00005019511)	SDK1 (ENSSVLG00005018436)	FOXK1 (ENSSVLG00005018254)	AP5Z1 (ENSSVLG00005018224)	ENSSVLG00005018177	RADIL (ENSSVLG00005017983)	MMD2 (ENSSVLG00005017856)	WIPI2 (ENSSVLG00005017246)	SLC29A4 (ENSSVLG00005024899)	TNRC18 (ENSSVLG00005024777)	FBXL18 (ENSSVLG00005024737) #37	ACTB (ENSSVLG00005024720) #36	FSCN1 (ENSSVLG00005024706) #35
Eurasian red squirrel	MODERN SPECIES	5	IL1F10 (ENSSVLG00005005916)	IL36RN (ENSSVLG00005005954)	ENSSVLG00005005994	IL36A (ENSSVLG00005006035)	IL36G (ENSSVLG00005006084)	IL37 (ENSSVLG00005006202)	IL1B (ENSSVLG00005006237)	ENSSVLG00005006289	ENSSVLG00005006322	CKAP2L (ENSSVLG00005006391)	SLC20A1 (ENSSVLG00005006537)	CHCHD5 (ENSSVLG00005006621)	POLR1B (ENSSVLG00005006694)	TTL (ENSSVLG00005006833)	ZC3H6 (ENSSVLG00005006888)	ENSSVLG00005006980 #22	ZC3H8 (ENSSVLG00005007026)	FBLN7 (ENSSVLG00005007087)	TMEM87B (ENSSVLG00005007136)	MERTK (ENSSVLG00005007198)	ANAPC1 (ENSSVLG00005007374)	ENSSVLG00005007423	BCL2L11 (ENSSVLG00005007468)	ACOXL (ENSSVLG00005007535)	ENSSVLG00005007625	ENSSVLG00005007649	BUB1 (ENSSVLG00005007806)	ENSSVLG00005008298	MTLN (ENSSVLG00005008567)	ENSSVLG00005008584	MALL (ENSSVLG00005008602)
Lagomorpha	ANCESTRAL SPECIES	173														ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00950000183157.a.a.b #35	ENSGT00510000048032 #34	ENSGT00950000182960.a.a.a.b ##36	ENSGT00390000015109 #37	ENSGT00940000157099
Rabbit	MODERN SPECIES	664														ENSOCUG00000025340	ENSOCUG00000034063	RAC1 (ENSOCUG00000009956) #22	DAGLB (ENSOCUG00000009961) #23	KDELR2 (ENSOCUG00000003101) #24	GRID2IP (ENSOCUG00000024847) #25	ZDHHC4 (ENSOCUG00000027942) #26	INTS15 (ENSOCUG00000002442) #27
Pika	MODERN SPECIES	1397																RAC1 (ENSOPRG00000005077) #22	ENSOPRG00000005088 #23
Tree shrew	MODERN SPECIES	1678																RAC1 (ENSTBEG00000017336) #22	DAGLB (ENSTBEG00000017430) #23	KDELR2 (ENSTBEG00000009844) #24
Primates	ANCESTRAL SPECIES	11	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000170143	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b	ENSGT00510000048032 #34	ENSGT00910000147936
Haplorrhini	ANCESTRAL SPECIES	26	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000170143	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT00510000048032 #34	ENSGT00910000147936	ENSGT00950000183157.a.a.b #35
Simiiformes	DUPLICATION
Simiiformes	DUPLICATION
Simiiformes	DUPLICATION
Simiiformes	ANCESTRAL SPECIES	26	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000170143	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A.a #31	ENSGT00940000154303.A.b #33	ENSGT00510000048032 #34	ENSGT00910000147936	ENSGT00950000183157.a.a.b #35
Catarrhini	ANCESTRAL SPECIES	6	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713.c #12	ENSGT00940000170143	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.b #22	ENSGT00390000014156.c	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A.a.d #31
Hominoidea	ANCESTRAL SPECIES	6	ENSGT00950000182960.a.a.a.a.b.rb.x #36	ENSGT00940000154172.gb.a	ENSGT00950000183157.a.a.b #35	ENSGT00510000048032 #34	ENSGT00390000004713.c #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.b #22	ENSGT00390000014156.c	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00390000004713.d #12	ENSGT00940000161875 #11	ENSGT00940000158475 #10	ENSGT00940000161824 #9	ENSGT00510000047886.a #8	ENSGT00510000048486 #7
Hominidae	ANCESTRAL SPECIES	26	ENSGT00950000182960.a.a.a.a.b.rb.x #36	ENSGT00940000154172.gb.a	ENSGT00950000183157.a.a.b #35	ENSGT00510000048032 #34	ENSGT00390000004713.c #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.b #22	ENSGT00390000014156.c	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A.a.c.a #31	ENSGT00940000154303.C.g.b ##30	ENSGT00940000153253.b.a.g	ENSGT00940000155974.i.a	ENSGT00390000004713.d #12	ENSGT00940000161875 #11
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	31								ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156.c	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.b #22	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A.a.c.a.a #31	ENSGT00940000155381.s #14	ENSGT00940000159899 #13	ENSGT00390000004713.c #12	ENSGT00940000161875.c.a #11	ENSGT00510000048032 #34
Gorilla	MODERN SPECIES	20	FBXL18 (ENSGGOG00000014037) #37	ACTB (ENSGGOG00000001133) #36	ENSGGOG00000025778	FSCN1 (ENSGGOG00000025593) #35	RNF216 (ENSGGOG00000042353) #34	ENSGGOG00000009068 #11	ENSGGOG00000027454 #12	ENSGGOG00000038387 #13	PMS2 (ENSGGOG00000007960) #14	AIMP2 (ENSGGOG00000007974) #16	EIF2AK1 (ENSGGOG00000016216) #18	ANKRD61 (ENSGGOG00000016229) #17	USP42 (ENSGGOG00000015369) #19	CYTH3 (ENSGGOG00000015376) #20	FAM220A (ENSGGOG00000003262)	RAC1 (ENSGGOG00000026733) #22	DAGLB (ENSGGOG00000003364) #23	KDELR2 (ENSGGOG00000042815) #24	GRID2IP (ENSGGOG00000008503) #25	INTS15 (ENSGGOG00000026416) #27	ZNF853 (ENSGGOG00000042292) #28	ZNF316 (ENSGGOG00000040823) #29	ZNF12 (ENSGGOG00000037007) #30	ENSGGOG00000036794 #14	ENSGGOG00000043211 #13	ENSGGOG00000002464 #12	ENSGGOG00000036515	ENSGGOG00000037468	C1GALT1 (ENSGGOG00000036533)	COL28A1 (ENSGGOG00000010238)	MIOS (ENSGGOG00000000652)
Homo/Pan group	ANCESTRAL SPECIES	30								ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156.c	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.b #22	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A.a.c.a.a #31	ENSGT00940000155381.s #14	ENSGT00940000159899 #13	ENSGT00390000004713.c #12	ENSGT00940000161875.c.a #11	ENSGT00510000048032 #34
Pan	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.k.a.a #22
Bonobo	MODERN SPECIES	19	GJE1 (ENSPPAG00000044075)	VTA1 (ENSPPAG00000028015)	ADGRG6 (ENSPPAG00000029546)	HIVEP2 (ENSPPAG00000043727)	AIG1 (ENSPPAG00000028952)	ADAT2 (ENSPPAG00000033931)	PEX3 (ENSPPAG00000028165)	FUCA2 (ENSPPAG00000037381)	ENSPPAG00000041752	PHACTR2 (ENSPPAG00000040531)	LTV1 (ENSPPAG00000015213)	ENSPPAG00000039717	ZC2HC1B (ENSPPAG00000035140)	PLAGL1 (ENSPPAG00000039736)	SF3B5 (ENSPPAG00000012940)	ENSPPAG00000033447 #22	STX11 (ENSPPAG00000001921)	ENSPPAG00000028739	UTRN (ENSPPAG00000001385)	ENSPPAG00000038106	ENSPPAG00000040864	FBXO30 (ENSPPAG00000041370)	SHPRH (ENSPPAG00000031038)	GRM1 (ENSPPAG00000042992)	RAB32 (ENSPPAG00000028297)	ADGB (ENSPPAG00000031064)	ENSPPAG00000028369	STXBP5 (ENSPPAG00000033851)	SASH1 (ENSPPAG00000029791)	UST (ENSPPAG00000027785)	ENSPPAG00000028432
Chimpanzee	MODERN SPECIES	622						ENSPTRG00000048223 #29	ENSPTRG00000049654 #30	ENSPTRG00000048669 #14	ENSPTRG00000047958 #16	ENSPTRG00000045071 #17	ENSPTRG00000049217 #18	ENSPTRG00000049666 #19	ENSPTRG00000043290 #20	FAM220A (ENSPTRG00000043522)	ENSPTRG00000050467	RAC1 (ENSPTRG00000052694) #22	ENSPTRG00000043602 #23	KDELR2 (ENSPTRG00000047111) #24	GRID2IP (ENSPTRG00000033718) #25	ZDHHC4 (ENSPTRG00000018915) #26	ENSPTRG00000052574	INTS15 (ENSPTRG00000018917) #27	ZNF853 (ENSPTRG00000043650) #28
Human	MODERN SPECIES	19	FBXL18 (ENSG00000155034) #37	ACTB (ENSG00000075624) #36	FSCN1 (ENSG00000075618) #35	RNF216 (ENSG00000011275) #34	OCM (ENSG00000122543) #11	CCZ1 (ENSG00000122674) #12	RSPH10B (ENSG00000155026) #13	PMS2 (ENSG00000122512) #14	AIMP2 (ENSG00000106305) #16	EIF2AK1 (ENSG00000086232) #18	ANKRD61 (ENSG00000157999) #17	USP42 (ENSG00000106346) #19	CYTH3 (ENSG00000008256) #20	FAM220A (ENSG00000178397)	SAGSIN1 (ENSG00000286075)	RAC1 (ENSG00000136238) #22	DAGLB (ENSG00000164535) #23	KDELR2 (ENSG00000136240) #24	GRID2IP (ENSG00000215045) #25	ZDHHC4 (ENSG00000136247) #26	INTS15 (ENSG00000146576) #27	ZNF853 (ENSG00000236609) #28	ZNF316 (ENSG00000205903) #29	ZNF12 (ENSG00000164631) #30	RSPH10B2 (ENSG00000169402) #13	CCZ1B (ENSG00000146574) #12	C1GALT1 (ENSG00000106392)	COL28A1 (ENSG00000215018)	MIOS (ENSG00000164654)	RPA3 (ENSG00000106399)	UMAD1 (ENSG00000219545)
Orangutan	MODERN SPECIES	20						ENSPPYG00000017359 #12	ENSPPYG00000017358 #13	PMS2 (ENSPPYG00000017341) #14	AIMP2 (ENSPPYG00000031737) #16	EIF2AK1 (ENSPPYG00000017343) #18	ANKRD61 (ENSPPYG00000017344) #17	USP42 (ENSPPYG00000017345) #19	CYTH3 (ENSPPYG00000017346) #20	FAM220A (ENSPPYG00000017347)	ENSPPYG00000036565	RAC1 (ENSPPYG00000017348) #22	DAGLB (ENSPPYG00000017349) #23	KDELR2 (ENSPPYG00000017350) #24	GRID2IP (ENSPPYG00000017351) #25	ZDHHC4 (ENSPPYG00000017352) #26	INTS15 (ENSPPYG00000017353) #27	ZNF853 (ENSPPYG00000040545) #28	ZNF316 (ENSPPYG00000033506) #29	ZNF12 (ENSPPYG00000030303) #30	ENSPPYG00000017340 #11	LMTK2 (ENSPPYG00000017360) #10	BHLHA15 (ENSPPYG00000017361) #9	TECPR1 (ENSPPYG00000017362) #8	ENSPPYG00000037940 #7	BAIAP2L1 (ENSPPYG00000017363)	NPTX2 (ENSPPYG00000029795)
Cercopithecidae	ANCESTRAL SPECIES	11	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713.c #12	ENSGT00940000170143	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156.c	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A.a.d #31
Cercopithecinae	ANCESTRAL SPECIES	8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713.c.h #12	ENSGT00940000170143	ENSGT00390000004713.c.g #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156.c	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A.a.d #31
Cercopithecinae_a	ANCESTRAL SPECIES	8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713.c.h #12	ENSGT00940000170143	ENSGT00390000004713.c.g #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156.c	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A.a.c.a #31
Macaca	ANCESTRAL SPECIES	3	ENSGT00940000153560.b.b.a	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713.c.g #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A.a.c.a #31	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35	ENSGT00950000182960.a.a.a.a.b.rb.v #36	ENSGT00390000015109 #37	ENSGT00910000147820
Pig-tailed macaque	MODERN SPECIES	80	NPTX2 (ENSMNEG00000031035)	BAIAP2L1 (ENSMNEG00000027564)	BRI3 (ENSMNEG00000000029) #7	TECPR1 (ENSMNEG00000039715) #8	BHLHA15 (ENSMNEG00000021350) #9	LMTK2 (ENSMNEG00000038154) #10	ENSMNEG00000036828 #11	ENSMNEG00000031130 #12	ENSMNEG00000034328 #13	PMS2 (ENSMNEG00000039965) #14	AIMP2 (ENSMNEG00000030339) #16	EIF2AK1 (ENSMNEG00000033109) #18	USP42 (ENSMNEG00000038408) #19	CYTH3 (ENSMNEG00000031782) #20	ENSMNEG00000041902	RAC1 (ENSMNEG00000039059) #22	DAGLB (ENSMNEG00000042196) #23	KDELR2 (ENSMNEG00000045050) #24	GRID2IP (ENSMNEG00000036441) #25	ZDHHC4 (ENSMNEG00000021133) #26	ENSMNEG00000045316	INTS15 (ENSMNEG00000024848) #27	ZNF853 (ENSMNEG00000044091) #28	ZNF316 (ENSMNEG00000038628) #29	ZNF12 (ENSMNEG00000031305) #30
Macaca_a	ANCESTRAL SPECIES	22	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.a.a.b.rb.v #36	ENSGT00950000183157.a.a.b #35	ENSGT00510000048032 #34	ENSGT00940000161875 #11	ENSGT00390000004713.c.g #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156.c	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000183030.m.a.a.b.a.a.a.a	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT01100000263493.a.b.a.b.b.b.a.a.a.a.b.b.b	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A.a.c.a #31
Crab-eating macaque	MODERN SPECIES	13	ENSMFAG00000036994	ENSMFAG00000049779	ENSMFAG00000059369	ENSMFAG00000047484 #11	ENSMFAG00000035825 #12	ENSMFAG00000030711 #13	PMS2 (ENSMFAG00000046359) #14	AIMP2 (ENSMFAG00000045123) #16	ANKRD61 (ENSMFAG00000045423) #17	EIF2AK1 (ENSMFAG00000036418) #18	ENSMFAG00000049363 #19	ENSMFAG00000065514	ENSMFAG00000051285	ENSMFAG00000053446	FAM220A (ENSMFAG00000039457)	RAC1 (ENSMFAG00000045457) #22	DAGLB (ENSMFAG00000040592) #23	KDELR2 (ENSMFAG00000038055) #24	ENSMFAG00000054370	ZDHHC4 (ENSMFAG00000002456) #26	INTS15 (ENSMFAG00000037040) #27	ENSMFAG00000054749	ENSMFAG00000065370	ENSMFAG00000048399	ZNF12 (ENSMFAG00000006390) #30	ENSMFAG00000042064 #31	ENSMFAG00000061747	ENSMFAG00000057400	ENSMFAG00000062555 #12	ENSMFAG00000003003 #12	ENSMFAG00000036278 #11
Cercopithecinae_b	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.k.a.a #22
Olive baboon	MODERN SPECIES	14	AIMP2 (ENSPANG00000010693) #16	EIF2AK1 (ENSPANG00000004605) #18	ANKRD61 (ENSPANG00000009970) #17	USP42 (ENSPANG00000000532) #19	CYTH3 (ENSPANG00000015584) #20	MMD2 (ENSPANG00000015670)	RNF216 (ENSPANG00000007249) #34	RBAK (ENSPANG00000015671) #33	FSCN1 (ENSPANG00000009103) #35	ACTB (ENSPANG00000015700) #36	TNRC18 (ENSPANG00000018936)	SLC29A4 (ENSPANG00000000676)	ENSPANG00000017642	FAM220A (ENSPANG00000046944)	ENSPANG00000033641	RAC1 (ENSPANG00000010758) #22	DAGLB (ENSPANG00000016791) #23	KDELR2 (ENSPANG00000018696) #24	GRID2IP (ENSPANG00000018761) #25	ZDHHC4 (ENSPANG00000015737) #26	INTS15 (ENSPANG00000022201) #27	ZNF853 (ENSPANG00000015668) #28	ZNF316 (ENSPANG00000009015) #29	ZNF12 (ENSPANG00000021731) #30	ENSPANG00000024105 #31	RADIL (ENSPANG00000019579)	AP5Z1 (ENSPANG00000000258)	FOXK1 (ENSPANG00000037960)	SDK1 (ENSPANG00000025137)	ENSPANG00000037200	ENSPANG00000045197
Vervet Monkey	MODERN SPECIES	20	TRRAP (ENSCSAG00000017767)	TMEM130 (ENSCSAG00000017759)	NPTX2 (ENSCSAG00000017758)	BAIAP2L1 (ENSCSAG00000017756)	BRI3 (ENSCSAG00000017754) #7	TECPR1 (ENSCSAG00000017751) #8	BHLHA15 (ENSCSAG00000019492) #9	LMTK2 (ENSCSAG00000017746) #10	PMS2 (ENSCSAG00000017741) #14	AIMP2 (ENSCSAG00000017739) #16	EIF2AK1 (ENSCSAG00000017735) #18	ANKRD61 (ENSCSAG00000017721) #17	USP42 (ENSCSAG00000017719) #19	CYTH3 (ENSCSAG00000017714) #20	FAM220A (ENSCSAG00000019493)	RAC1 (ENSCSAG00000017712) #22	DAGLB (ENSCSAG00000017706) #23	KDELR2 (ENSCSAG00000017700) #24	GRID2IP (ENSCSAG00000017697) #25	ZDHHC4 (ENSCSAG00000017695) #26	INTS15 (ENSCSAG00000017692) #27	ZNF853 (ENSCSAG00000017691) #28	ZNF316 (ENSCSAG00000017690) #29	ENSCSAG00000017688	ZNF12 (ENSCSAG00000017682) #30	ENSCSAG00000017677 #31	RNF216 (ENSCSAG00000017676) #34	FSCN1 (ENSCSAG00000017673) #35	ENSCSAG00000019494	ENSCSAG00000017672 #36	ENSCSAG00000017671 #36
Rhinopithecus	ANCESTRAL SPECIES	275						ENSGT00390000004713.c #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.b #22	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30
Golden snub-nosed monkey	MODERN SPECIES	1348							ENSRROG00000039177 #12	ENSRROG00000044720 #13	PMS2 (ENSRROG00000034721) #14	AIMP2 (ENSRROG00000043430) #16	EIF2AK1 (ENSRROG00000024873) #18	ANKRD61 (ENSRROG00000031882) #17	USP42 (ENSRROG00000034058) #19	CYTH3 (ENSRROG00000040226) #20	ENSRROG00000031019	RAC1 (ENSRROG00000044094) #22	DAGLB (ENSRROG00000038174) #23	KDELR2 (ENSRROG00000029484) #24	GRID2IP (ENSRROG00000044597) #25	ZDHHC4 (ENSRROG00000007311) #26	ENSRROG00000035370	INTS15 (ENSRROG00000039312) #27	ZNF853 (ENSRROG00000028937) #28	ZNF316 (ENSRROG00000031845) #29	ZNF12 (ENSRROG00000000980) #30
Platyrrhini	ANCESTRAL SPECIES	19	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.d	ENSGT00390000015826 #16	ENSGT00940000157605.c #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A.a.a #31	ENSGT00940000154303.A.b #33	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35	ENSGT00950000182960.a.a.a.a.b.rb #36	ENSGT00390000015109 #37	ENSGT00940000157099
Cebidae	ANCESTRAL SPECIES	24	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.d	ENSGT00390000015826 #16	ENSGT00940000157605.c #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A.a.a #31	ENSGT00940000154303.A.b #33	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35	ENSGT00950000182960.a.a.a.a.b.rb #36	ENSGT00390000015109 #37	ENSGT00940000157099
Marmoset	MODERN SPECIES	11	BAIAP2L1 (ENSCJAG00000031937)	BRI3 (ENSCJAG00000071589) #7	TECPR1 (ENSCJAG00000033050) #8	BHLHA15 (ENSCJAG00000023085) #9	LMTK2 (ENSCJAG00000015240) #10	ENSCJAG00000015258 #11	ENSCJAG00000015269 #12	ENSCJAG00000015308 #13	PMS2 (ENSCJAG00000015340) #14	AIMP2 (ENSCJAG00000015370) #16	EIF2AK1 (ENSCJAG00000015372) #18	ANKRD61 (ENSCJAG00000015402) #17	USP42 (ENSCJAG00000015403) #19	CYTH3 (ENSCJAG00000046741) #20	ENSCJAG00000084892	RAC1 (ENSCJAG00000015455) #22	DAGLB (ENSCJAG00000015461) #23	KDELR2 (ENSCJAG00000015474) #24	GRID2IP (ENSCJAG00000015493) #25	ZDHHC4 (ENSCJAG00000015517) #26	INTS15 (ENSCJAG00000015531) #27	ZNF316 (ENSCJAG00000046914) #29	ZNF12 (ENSCJAG00000015557) #30	RBAK (ENSCJAG00000021500) #33	ENSCJAG00000087020 #34	RNF216 (ENSCJAG00000000082) #34	FSCN1 (ENSCJAG00000009271) #35	ENSCJAG00000074750 #36	FBXL18 (ENSCJAG00000000010) #37	TNRC18 (ENSCJAG00000000014)	SLC29A4 (ENSCJAG00000000017)
Cebidae_a	ANCESTRAL SPECIES	19	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.d	ENSGT00390000015826 #16	ENSGT00940000157605.c #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.b.b #22	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A.a.a #31	ENSGT00940000154303.A.b #33	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35	ENSGT00950000182960.a.a.a.a.b.rb.o #36	ENSGT00390000015109 #37	ENSGT00940000157099
Capuchin	MODERN SPECIES	82	ENSCCAG00000027694 #11	ENSCCAG00000008446 #12	ENSCCAG00000000590	ENSCCAG00000023211 #13	PMS2 (ENSCCAG00000034137) #14	AIMP2 (ENSCCAG00000029971) #16	EIF2AK1 (ENSCCAG00000038031) #18	ANKRD61 (ENSCCAG00000016823) #17	ENSCCAG00000024128	USP42 (ENSCCAG00000033459) #19	ENSCCAG00000033290	CYTH3 (ENSCCAG00000023188) #20	ENSCCAG00000023146	ENSCCAG00000030315	ENSCCAG00000002321	RAC1 (ENSCCAG00000018116) #22	DAGLB (ENSCCAG00000026009) #23	KDELR2 (ENSCCAG00000037966) #24	GRID2IP (ENSCCAG00000037972) #25	ZDHHC4 (ENSCCAG00000037975) #26	C7orf26 (ENSCCAG00000015301) #27	ZNF853 (ENSCCAG00000037168) #28	ZNF316 (ENSCCAG00000024464) #29	ZNF12 (ENSCCAG00000012689) #30	ENSCCAG00000020987 #31	ENSCCAG00000033746 #31	RBAK (ENSCCAG00000021483) #33	ENSCCAG00000036334 #31	RNF216 (ENSCCAG00000022796) #34	FSCN1 (ENSCCAG00000035212) #35	ACTB (ENSCCAG00000037169) #36
Mas night monkey	MODERN SPECIES	343	MPHOSPH8 (ENSANAG00000020044)	ENSANAG00000020843	ENSANAG00000010505	PARP4 (ENSANAG00000021254)	ENSANAG00000031834	MICU2 (ENSANAG00000021752)	FGF9 (ENSANAG00000017308)	ENSANAG00000033332	ENSANAG00000033204	ENSANAG00000031654	ENSANAG00000022011	ENSANAG00000020073	ENSANAG00000015017	ENSANAG00000033775	ENSANAG00000031755	ENSANAG00000025862 #22	GPR12 (ENSANAG00000019460)	ENSANAG00000019364	WASF3 (ENSANAG00000032101)	CDK8 (ENSANAG00000019361)	RNF6 (ENSANAG00000029061)	SHISA2 (ENSANAG00000035019)	ENSANAG00000032345 #36	ATP8A2 (ENSANAG00000031539)	ENSANAG00000031404	ZDHHC20 (ENSANAG00000029922)	ENSANAG00000034653	ENSANAG00000031766	SGCG (ENSANAG00000035637)	SACS (ENSANAG00000035314)	ENSANAG00000022043
Simiiformes	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.k.a.b #22
Catarrhini	ANCESTRAL SPECIES	12	ENSGT00940000160971	ENSGT00940000163956.c	ENSGT00940000165112	ENSGT00940000164535.a	ENSGT00940000164535.b	ENSGT00940000164981	ENSGT00940000162721	ENSGT00940000162359	ENSGT00390000002886.b.b	ENSGT00390000004226	ENSGT00940000158878	ENSGT00940000156974	ENSGT00940000159516	ENSGT00940000163347	ENSGT00940000160788	ENSGT00940000153500.a.a.k.a.b #22	ENSGT00940000162539	ENSGT00940000163390	ENSGT00940000153425.b	ENSGT00940000158723	ENSGT01070000253816.a.b	ENSGT00530000063353.b	ENSGT00390000009902	ENSGT01100000263512.b.b.b	ENSGT00940000162744	ENSGT00940000153476.b.m.b	ENSGT00950000182941.b.a	ENSGT00940000154833	ENSGT00910000147399	ENSGT00940000153460.c.b	ENSGT00510000047104
Cercopithecidae	ANCESTRAL SPECIES	19	ENSGT00940000160971	ENSGT00940000163956.c.b	ENSGT00940000165112	ENSGT00940000164535.a	ENSGT00940000164535.b	ENSGT00940000164981	ENSGT00940000162721	ENSGT00940000162359	ENSGT00390000002886.b.b	ENSGT00390000004226	ENSGT00940000158878	ENSGT00940000156974	ENSGT00940000159516	ENSGT00940000163347	ENSGT00940000160788	ENSGT00940000153500.a.a.k.a.b #22	ENSGT00940000162539	ENSGT00940000163390	ENSGT00940000153425.b	ENSGT00940000158723	ENSGT01070000253816.a.b	ENSGT00530000063353.b	ENSGT00390000009902	ENSGT01100000263512.b.b.b	ENSGT00940000162744	ENSGT00950000182941.b.a	ENSGT00940000154833.s.a	ENSGT00910000147399	ENSGT00940000153460.c.b	ENSGT00510000047104	ENSGT00390000016655.a.a.a.b
Rhinopithecus	DUPLICATION
Rhinopithecus	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.k.a.b.a #22
Golden snub-nosed monkey	MODERN SPECIES	3310																ENSRROG00000031240 #22
Black snub-nosed monkey	MODERN SPECIES	1209																ENSRBIG00000033237 #22
Rhinopithecus	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.k.a.b.b #22
Golden snub-nosed monkey	MODERN SPECIES	60																ENSRROG00000034736 #22
Cercopithecinae	ANCESTRAL SPECIES	13	ENSGT00940000160971	ENSGT00940000163956.c.b	ENSGT00940000165112	ENSGT00940000164535.a	ENSGT00940000164535.b	ENSGT00940000164981	ENSGT00940000162721	ENSGT00940000162359	ENSGT00390000002886.b.b	ENSGT00390000004226	ENSGT00940000158878	ENSGT00940000156974	ENSGT00940000159516	ENSGT00940000163347	ENSGT00940000160788	ENSGT00940000153500.a.a.k.a.b #22	ENSGT00940000162539	ENSGT00940000163390	ENSGT00940000153425.b	ENSGT00940000158723	ENSGT01070000253816.a.b	ENSGT00530000063353.b	ENSGT00390000009902	ENSGT01100000263512.b.b.b	ENSGT00940000162744	ENSGT00950000182941.b.a	ENSGT00940000154833.s.a	ENSGT00910000147399	ENSGT00940000153460.c.b	ENSGT00510000047104	ENSGT00390000016655.a.a.a.b.d.b
Cercopithecinae_a	ANCESTRAL SPECIES	11	ENSGT00940000165112	ENSGT00940000164535.a	ENSGT00940000164535.b.b	ENSGT01010000223978	ENSGT00390000013647	ENSGT00940000162359	ENSGT00390000002886.b.b	ENSGT00390000004226	ENSGT00940000158878	ENSGT00940000156974	ENSGT00940000159516	ENSGT00390000009320	ENSGT00940000163347	ENSGT00940000155476.h	ENSGT00940000160788	ENSGT00940000153500.a.a.k.a.b #22	ENSGT00940000162539	ENSGT00940000163390	ENSGT00940000153425.b	ENSGT00940000158723	ENSGT01070000253816.a.b	ENSGT00530000063353.b	ENSGT00390000009902	ENSGT01100000263512.b.b.b	ENSGT00940000162744	ENSGT00950000182941.b.a	ENSGT00940000154833.s.a	ENSGT00910000147399	ENSGT00940000153460.c.b	ENSGT00510000047104	ENSGT00390000016655.a.a.a.b.d.b
Macaca	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.k.a.b #22
Pig-tailed macaque	MODERN SPECIES	572						SOX3 (ENSMNEG00000025961)	ENSMNEG00000000177	CXorf66 (ENSMNEG00000038844)	ATP11C (ENSMNEG00000034736)	MCF2 (ENSMNEG00000041163)	F9 (ENSMNEG00000008625)	ENSMNEG00000021138	ENSMNEG00000036539	ENSMNEG00000042369	ZIC3 (ENSMNEG00000040682)	ENSMNEG00000041262 #22	ENSMNEG00000035645	GPR101 (ENSMNEG00000019061)	ENSMNEG00000033588	ENSMNEG00000039712	ARHGEF6 (ENSMNEG00000016073)	CD40LG (ENSMNEG00000039285)	VGLL1 (ENSMNEG00000035420)	HTATSF1 (ENSMNEG00000024084)	BRS3 (ENSMNEG00000031855)	ADGRG4 (ENSMNEG00000029288)	MAP7D3 (ENSMNEG00000029479)	ENSMNEG00000040336	ENSMNEG00000038262	SLC9A6 (ENSMNEG00000043541)	MMGT1 (ENSMNEG00000033481)
Cercopithecinae_b	ANCESTRAL SPECIES	45	ENSGT00940000164981	ENSGT00910000146818	ENSGT00940000162721	ENSGT00890000139472.a.b	ENSGT00390000013647	ENSGT00940000162359	ENSGT00390000002886.b.b	ENSGT00390000004226	ENSGT00940000158878	ENSGT00940000156974	ENSGT00940000159516	ENSGT00390000009320	ENSGT00940000163347	ENSGT00940000155476.h	ENSGT00940000160788	ENSGT00940000153500.a.a.k.a.b #22	ENSGT00940000162539	ENSGT00940000163390	ENSGT00940000153425.b	ENSGT01000000214719.a	ENSGT00940000158723	ENSGT01070000253816.a.b	ENSGT00530000063353.b	ENSGT00390000009902	ENSGT01100000263512.b.b.b	ENSGT00940000162744	ENSGT00950000182941.b.a	ENSGT00940000154833.s.a	ENSGT00940000153460.c.b	ENSGT00510000047104	ENSGT00390000016655.a.a.a.b.d.b
Cercopithecinae_d	ANCESTRAL SPECIES	128	ENSGT00940000164981	ENSGT00910000146818	ENSGT00940000162721	ENSGT00890000139472.a.b	ENSGT00390000013647	ENSGT00940000162359	ENSGT00390000002886.b.b	ENSGT00390000004226	ENSGT00940000158878	ENSGT00940000156974	ENSGT00940000159516	ENSGT00390000009320	ENSGT00940000163347	ENSGT00940000155476.h	ENSGT00940000160788	ENSGT00940000153500.a.a.k.a.b #22	ENSGT00940000162539	ENSGT00730000111080.b.l	ENSGT00940000153425.b	ENSGT01000000214719.a	ENSGT00940000158723	ENSGT01070000253816.a.b	ENSGT00530000063353.b	ENSGT00390000009902	ENSGT01100000263512.b.b.b	ENSGT00940000162744	ENSGT00950000182941.b.a	ENSGT00940000154833.s.a	ENSGT00940000153460.c.b	ENSGT00510000047104	ENSGT00390000016655.a.a.a.b.d.b
Drill	MODERN SPECIES	1142														ENSMLEG00000035106	ZIC3 (ENSMLEG00000004378)	ENSMLEG00000031538 #22	GPR101 (ENSMLEG00000026912)	ENSMLEG00000032221	ENSMLEG00000028215	ENSMLEG00000021095	ENSMLEG00000020799	ARHGEF6 (ENSMLEG00000026561)	CD40LG (ENSMLEG00000042928)	VGLL1 (ENSMLEG00000040123)	HTATSF1 (ENSMLEG00000035511)	BRS3 (ENSMLEG00000034212)	ADGRG4 (ENSMLEG00000029336)	MAP7D3 (ENSMLEG00000028761)	ENSMLEG00000006125
Hominoidea	DUPLICATION
Hominoidea	ANCESTRAL SPECIES	29	ENSGT00940000164535.a	ENSGT00940000164535.b	ENSGT00940000164981	ENSGT00940000162721	ENSGT01010000223978	ENSGT00390000013647	ENSGT00940000162359	ENSGT00390000002886.b.b	ENSGT00390000004226	ENSGT00940000158878	ENSGT00940000156974	ENSGT00940000159516	ENSGT00940000162313	ENSGT00940000163347	ENSGT00940000160788	ENSGT00940000153500.a.a.k.a.b.c #22	ENSGT00940000162539	ENSGT00940000153425.a.a.b.b	ENSGT00940000165003	ENSGT01000000214719	ENSGT00940000158723	ENSGT01070000253816.a.b	ENSGT00530000063353.b	ENSGT00390000009902	ENSGT01100000263512.b.b.b	ENSGT00940000162744	ENSGT00940000153476.b.m.b	ENSGT00950000182941.b.a	ENSGT00940000154833	ENSGT00910000147399	ENSGT00940000153460.c.b
Hominidae	ANCESTRAL SPECIES	8	ENSGT00940000164535.a	ENSGT00940000164535.b	ENSGT00940000164981	ENSGT00910000146818	ENSGT01010000223978	ENSGT00390000013647	ENSGT00940000162359	ENSGT00390000002886.b.b	ENSGT00390000004226	ENSGT00940000158878	ENSGT00940000156974	ENSGT00940000159516	ENSGT00940000162313	ENSGT00940000163347	ENSGT00940000160788	ENSGT00940000153500.a.a.k.a.b.c #22	ENSGT00940000162539	ENSGT00940000153425.a.a.b.b	ENSGT00940000158723	ENSGT01070000253816.a.b	ENSGT00530000063353.b	ENSGT00390000009902	ENSGT01100000263512.b.b.b	ENSGT00940000162744	ENSGT00940000153476.b.m.b	ENSGT00950000182941.b.a	ENSGT00940000154833	ENSGT00910000147399	ENSGT00940000153460.c.b	ENSGT00510000047104	ENSGT00390000016655.a.a.a.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	9	ENSGT00940000164535.a	ENSGT00940000164535.b	ENSGT00940000164981	ENSGT00910000146818	ENSGT01010000223978	ENSGT00390000013647	ENSGT00940000162359	ENSGT00390000002886.b.b	ENSGT00390000004226	ENSGT00940000158878	ENSGT00940000156974	ENSGT00940000159516	ENSGT00940000162313	ENSGT00940000163347	ENSGT00940000160788	ENSGT00940000153500.a.a.k.a.b.c #22	ENSGT00940000162539	ENSGT00940000153425.a.a.b.b	ENSGT00940000165003	ENSGT01000000214719	ENSGT00940000158723	ENSGT01070000253816.a.b	ENSGT00530000063353.b	ENSGT00390000009902	ENSGT01100000263512.b.b.b	ENSGT00940000162744	ENSGT00940000153476.b.m.b	ENSGT00950000182941.b.a	ENSGT00940000154833	ENSGT00910000147399	ENSGT00940000153460.c.b
Gorilla	MODERN SPECIES	523	ENSGGOG00000037757	ENSGGOG00000008654	ENSGGOG00000002221	ENSGGOG00000026272	ENSGGOG00000042700	ENSGGOG00000041264	ENSGGOG00000013898	ENSGGOG00000037930	CXorf66 (ENSGGOG00000025523)	ATP11C (ENSGGOG00000001112)	MCF2 (ENSGGOG00000004477)	F9 (ENSGGOG00000000618)	ENSGGOG00000042381	ENSGGOG00000009891	ZIC3 (ENSGGOG00000011914)	ENSGGOG00000026094 #22	GPR101 (ENSGGOG00000005255)	ENSGGOG00000040799	ENSGGOG00000027619	ENSGGOG00000027459	ENSGGOG00000037784	ARHGEF6 (ENSGGOG00000013983)	CD40LG (ENSGGOG00000010483)	VGLL1 (ENSGGOG00000006552)	HTATSF1 (ENSGGOG00000026072)	BRS3 (ENSGGOG00000003297)	ADGRG4 (ENSGGOG00000025527)	ENSGGOG00000041317	MAP7D3 (ENSGGOG00000003029)	ENSGGOG00000010054	SLC9A6 (ENSGGOG00000006724)
Homo/Pan group	ANCESTRAL SPECIES	9	ENSGT00940000163956.c	ENSGT00940000165112	ENSGT00940000164535.a	ENSGT00940000164535.b	ENSGT00940000164981	ENSGT00910000146818	ENSGT00730000111796	ENSGT00940000162359	ENSGT00390000002886.b.b	ENSGT00390000004226	ENSGT00940000158878	ENSGT00940000156974	ENSGT00940000159516	ENSGT00940000162313	ENSGT00940000160788	ENSGT00940000153500.a.a.k.a.b.c #22	ENSGT00940000162539	ENSGT00940000153425.a.a.b.b	ENSGT00940000165003	ENSGT01000000214719	ENSGT00940000158723	ENSGT01070000253816.a.b	ENSGT00530000063353.b	ENSGT00390000009902	ENSGT01100000263512.b.b.b	ENSGT00940000162744	ENSGT00940000153476.b.m.b	ENSGT00950000182941.b.a	ENSGT00940000154833	ENSGT00910000147399	ENSGT00940000153460.c.b
Pan	ANCESTRAL SPECIES	6	ENSGT00940000164535.b	ENSGT00940000164981	ENSGT00910000146818	ENSGT00730000111796	ENSGT00940000162359	ENSGT00390000002886.b.b	ENSGT00940000153147.m.a.a.a.a.b.a.a.a	ENSGT00390000004226	ENSGT00940000158878	ENSGT00940000156974	ENSGT00940000159516	ENSGT00910000148205	ENSGT00950000183029.B.c.b.b.a.d	ENSGT00940000162313	ENSGT00940000160788	ENSGT00940000153500.a.a.k.a.b.c #22	ENSGT00940000162539	ENSGT00940000165733	ENSGT00940000153425.a.a.b.b	ENSGT00940000165003	ENSGT01000000214719	ENSGT00940000158723	ENSGT01070000253816.a.b	ENSGT00530000063353.b	ENSGT00390000009902	ENSGT01100000263512.b.b.b	ENSGT00940000162744	ENSGT00940000153476.b.m.b	ENSGT00950000182941.b.a	ENSGT00940000154833	ENSGT00910000147399
Bonobo	MODERN SPECIES	369	MAGEC2 (ENSPPAG00000026474)	ENSPPAG00000026388	ENSPPAG00000030721	ENSPPAG00000026521	ENSPPAG00000025131	ENSPPAG00000023819	ENSPPAG00000037228	CXorf66 (ENSPPAG00000038036)	ATP11C (ENSPPAG00000043527)	MCF2 (ENSPPAG00000034608)	F9 (ENSPPAG00000039904)	ENSPPAG00000037956	ENSPPAG00000028602	FGF13 (ENSPPAG00000035766)	ZIC3 (ENSPPAG00000030013)	ENSPPAG00000037272 #22	GPR101 (ENSPPAG00000016837)	ENSPPAG00000036722	RBMX (ENSPPAG00000028409)	ENSPPAG00000022910	ENSPPAG00000034899	ARHGEF6 (ENSPPAG00000028700)	CD40LG (ENSPPAG00000042603)	VGLL1 (ENSPPAG00000035917)	HTATSF1 (ENSPPAG00000024268)	BRS3 (ENSPPAG00000031235)	ADGRG4 (ENSPPAG00000040242)	ENSPPAG00000025451	MAP7D3 (ENSPPAG00000033016)	ENSPPAG00000034865	ENSPPAG00000011049
Gibbon	MODERN SPECIES	449	SLITRK4 (ENSNLEG00000034309)	ENSNLEG00000035725	ENSNLEG00000032077	ENSNLEG00000001381	LDOC1 (ENSNLEG00000002160)	ENSNLEG00000034744	SOX3 (ENSNLEG00000018830)	ENSNLEG00000027108	CXorf66 (ENSNLEG00000003353)	ATP11C (ENSNLEG00000003317)	MCF2 (ENSNLEG00000003068)	F9 (ENSNLEG00000003035)	ENSNLEG00000032994	ENSNLEG00000003011	ENSNLEG00000003005	ENSNLEG00000032935 #22	GPR101 (ENSNLEG00000018828)	ENSNLEG00000031294	RBMX (ENSNLEG00000002964)	ENSNLEG00000035535	ARHGEF6 (ENSNLEG00000002838)	CD40LG (ENSNLEG00000002818)	VGLL1 (ENSNLEG00000002785)	HTATSF1 (ENSNLEG00000002746)	BRS3 (ENSNLEG00000002740)	ADGRG4 (ENSNLEG00000002681)	ENSNLEG00000035956	MAP7D3 (ENSNLEG00000002667)	ENSNLEG00000002560	SLC9A6 (ENSNLEG00000002336)	MMGT1 (ENSNLEG00000002320)
Hominoidea	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.k.a.b.d #22
Gibbon	MODERN SPECIES	7	BAIAP2L1 (ENSNLEG00000033877)	ENSNLEG00000035321 #7	ENSNLEG00000012944	TECPR1 (ENSNLEG00000010642) #8	BHLHA15 (ENSNLEG00000018875) #9	ENSNLEG00000027958	LMTK2 (ENSNLEG00000010627) #10	ENSNLEG00000035464	ENSNLEG00000000939 #14	AIMP2 (ENSNLEG00000035742) #16	ANKRD61 (ENSNLEG00000001091) #17	EIF2AK1 (ENSNLEG00000000992) #18	USP42 (ENSNLEG00000001092) #19	CYTH3 (ENSNLEG00000001145) #20	ENSNLEG00000001188	ENSNLEG00000015697 #22	DAGLB (ENSNLEG00000015668) #23	KDELR2 (ENSNLEG00000015662) #24	GRID2IP (ENSNLEG00000015646) #25	ZDHHC4 (ENSNLEG00000015607) #26	INTS15 (ENSNLEG00000015599) #27	ENSNLEG00000015596 #29	ZNF12 (ENSNLEG00000027354) #30	ENSNLEG00000036079	ENSNLEG00000036045 #14	ENSNLEG00000015579 #13	ENSNLEG00000026665 #12	RNF216 (ENSNLEG00000015530) #34	ENSNLEG00000028647 #35	ENSNLEG00000027252	ACTB (ENSNLEG00000015506) #36
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.k.a.b #22
Cebidae	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.k.a.b #22
Cebidae_a	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.k.a.b #22
Capuchin	MODERN SPECIES	389						CCR6 (ENSCCAG00000023108)	CEP43 (ENSCCAG00000002534)	RNASET2 (ENSCCAG00000022079)	RPS6KA2 (ENSCCAG00000032079)	MPC1 (ENSCCAG00000027814)	SFT2D1 (ENSCCAG00000030562)	PRR18 (ENSCCAG00000031870)	TBXT (ENSCCAG00000024677)	ENSCCAG00000037393	ENSCCAG00000022749	ENSCCAG00000019705 #22	ENSCCAG00000036924	ENSCCAG00000034417	ENSCCAG00000029815	ENSCCAG00000020853	C6orf118 (ENSCCAG00000037689)
Simiiformes	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.k.b #22
Platyrrhini	DUPLICATION
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.k.b.a #22
Mas night monkey	MODERN SPECIES	278	MMP20 (ENSANAG00000021702)	MMP7 (ENSANAG00000023347)	TMEM123 (ENSANAG00000029026)	BIRC2 (ENSANAG00000037030)	BIRC3 (ENSANAG00000035989)	ENSANAG00000022618	YAP1 (ENSANAG00000029463)	CFAP300 (ENSANAG00000023658)	CEP126 (ENSANAG00000033095)	ANGPTL5 (ENSANAG00000025830)	TRPC6 (ENSANAG00000032595)	PGR (ENSANAG00000036519)	ARHGAP42 (ENSANAG00000033530)	ENSANAG00000026824	CNTN5 (ENSANAG00000024170)	ENSANAG00000022382 #22	CCDC82 (ENSANAG00000025591)	MAML2 (ENSANAG00000022462)	MTMR2 (ENSANAG00000028178)	CEP57 (ENSANAG00000033666)	FAM76B (ENSANAG00000027519)	SESN3 (ENSANAG00000032229)	ENSANAG00000031662	ENDOD1 (ENSANAG00000036222)	SRSF8 (ENSANAG00000031642)	ENSANAG00000022615	CWC15 (ENSANAG00000020484)
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.k.b.b #22
Mas night monkey	MODERN SPECIES	556	BRI3 (ENSANAG00000027654) #7	TECPR1 (ENSANAG00000034833) #8	LMTK2 (ENSANAG00000030215) #10	ENSANAG00000024814 #11	ENSANAG00000034191 #12	ENSANAG00000008157 #13	PMS2 (ENSANAG00000030348) #14	ENSANAG00000009006	AIMP2 (ENSANAG00000029275) #16	ENSANAG00000030962 #18	ANKRD61 (ENSANAG00000030693) #17	USP42 (ENSANAG00000033749) #19	CYTH3 (ENSANAG00000018615) #20	ENSANAG00000036757	ENSANAG00000019572	ENSANAG00000035216 #22	DAGLB (ENSANAG00000036166) #23	KDELR2 (ENSANAG00000020944) #24	GRID2IP (ENSANAG00000036999) #25	ZDHHC4 (ENSANAG00000037416) #26	INTS15 (ENSANAG00000025698) #27	ZNF853 (ENSANAG00000038386) #28	ZNF316 (ENSANAG00000009762) #29	ZNF12 (ENSANAG00000035969) #30	RBAK (ENSANAG00000036404) #33
Cebidae	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.k.b.b #22
Cebidae_a	ANCESTRAL SPECIES	19	ENSGT00940000153560.b.b.a.c	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.d	ENSGT00390000015826 #16	ENSGT00940000157605.c #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.b.b #22	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A.a.a #31	ENSGT00940000154303.A.b #33	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35	ENSGT00950000182960.a.a.a.a.b.rb.o #36	ENSGT00390000015109 #37
Bolivian squirrel monkey	MODERN SPECIES	104	NPTX2 (ENSSBOG00000029192)	ENSSBOG00000018064	ENSSBOG00000032858 #7	TECPR1 (ENSSBOG00000018971) #8	LMTK2 (ENSSBOG00000035095) #10	ENSSBOG00000021103 #11	ENSSBOG00000032415 #12	ENSSBOG00000031799 #13	PMS2 (ENSSBOG00000028728) #14	ENSSBOG00000027924	AIMP2 (ENSSBOG00000024906) #16	EIF2AK1 (ENSSBOG00000026446) #18	ANKRD61 (ENSSBOG00000024193) #17	USP42 (ENSSBOG00000032011) #19	CYTH3 (ENSSBOG00000026269) #20	ENSSBOG00000024828 #22	DAGLB (ENSSBOG00000034747) #23	KDELR2 (ENSSBOG00000025326) #24	GRID2IP (ENSSBOG00000029841) #25	ZDHHC4 (ENSSBOG00000036004) #26	INTS15 (ENSSBOG00000034408) #27	ZNF853 (ENSSBOG00000021317) #28	ZNF316 (ENSSBOG00000025746) #29	ZNF12 (ENSSBOG00000033261) #30	RBAK (ENSSBOG00000030800) #33	RNF216 (ENSSBOG00000011526) #34	FSCN1 (ENSSBOG00000025510) #35
Catarrhini	ANCESTRAL SPECIES	6	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713.c #12	ENSGT00940000170143	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.b #22	ENSGT00390000014156.c	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A.a.d #31
Hominoidea	ANCESTRAL SPECIES	6	ENSGT00940000157099	ENSGT00390000015109 #37	ENSGT00950000182960.a.a.a.a.b.rb.x #36	ENSGT00940000154172.gb.a	ENSGT00950000183157.a.a.b #35	ENSGT00510000048032 #34	ENSGT00390000004713.c #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.b #22	ENSGT00390000014156.c	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00390000004713.d #12	ENSGT00940000161875 #11	ENSGT00940000158475 #10	ENSGT00940000161824 #9
Hominidae	ANCESTRAL SPECIES	26	ENSGT00940000157099	ENSGT00390000015109 #37	ENSGT00950000182960.a.a.a.a.b.rb.x #36	ENSGT00940000154172.gb.a	ENSGT00950000183157.a.a.b #35	ENSGT00510000048032 #34	ENSGT00390000004713.c #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.b #22	ENSGT00390000014156.c	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A.a.c.a #31	ENSGT00940000154303.C.g.b ##30	ENSGT00940000153253.b.a.g	ENSGT00940000155974.i.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	31									ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156.c	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.b #22	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A.a.c.a.a #31	ENSGT00940000155381.s #14	ENSGT00940000159899 #13	ENSGT00390000004713.c #12	ENSGT00940000161875.c.a #11
Homo/Pan group	ANCESTRAL SPECIES	30									ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156.c	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.b #22	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A.a.c.a.a #31	ENSGT00940000155381.s #14	ENSGT00940000159899 #13	ENSGT00390000004713.c #12	ENSGT00940000161875.c.a #11
Pan	ANCESTRAL SPECIES	37	ENSGT00950000182960.a.a.a.a.b.rb.x #36	ENSGT00940000154172.gb.a	ENSGT00950000183157.a.a.b.x #35	ENSGT00510000048032 #34	ENSGT00940000161875.c.a #11	ENSGT00390000004713.c #12	ENSGT00940000159899 #13	ENSGT00940000155381.s.a #14	ENSGT00390000015826 #16	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156.c	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.b #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A.a.c.a.a #31
Chimpanzee	MODERN SPECIES	20	MIOS (ENSPTRG00000018926)	COL28A1 (ENSPTRG00000034434)	C1GALT1 (ENSPTRG00000048932)	ENSPTRG00000047119	ENSPTRG00000049642	ENSPTRG00000046263	CCZ1 (ENSPTRG00000051931) #12	ENSPTRG00000018921 #13	PMS2 (ENSPTRG00000018902) #14	AIMP2 (ENSPTRG00000018903) #16	ANKRD61 (ENSPTRG00000018905) #17	EIF2AK1 (ENSPTRG00000018904) #18	USP42 (ENSPTRG00000018906) #19	CYTH3 (ENSPTRG00000018907) #20	ENSPTRG00000028666	RAC1 (ENSPTRG00000018910) #22	ENSPTRG00000051819 #23	ENSPTRG00000043578 #29	ENSPTRG00000018919 #30	ENSPTRG00000018920 #14	ENSPTRG00000051187 #13	ENSPTRG00000048336 #12	OCM (ENSPTRG00000018896) #11	RNF216 (ENSPTRG00000018894) #34	FSCN1 (ENSPTRG00000018892) #35	ENSPTRG00000052762	ACTB (ENSPTRG00000018890) #36	FBXL18 (ENSPTRG00000018889) #37	TNRC18 (ENSPTRG00000018886)	SLC29A4 (ENSPTRG00000018884)	WIPI2 (ENSPTRG00000018882)
Bonobo	MODERN SPECIES	20	SLC29A4 (ENSPPAG00000038957)	ENSPPAG00000040010	FBXL18 (ENSPPAG00000027621) #37	ACTB (ENSPPAG00000037371) #36	ENSPPAG00000033354	ENSPPAG00000041475 #35	RNF216 (ENSPPAG00000032864) #34	ENSPPAG00000033714 #13	PMS2 (ENSPPAG00000014830) #14	AIMP2 (ENSPPAG00000035344) #16	EIF2AK1 (ENSPPAG00000038784) #18	ANKRD61 (ENSPPAG00000042004) #17	USP42 (ENSPPAG00000029844) #19	CYTH3 (ENSPPAG00000032310) #20	ENSPPAG00000042160	ENSPPAG00000032857 #22	DAGLB (ENSPPAG00000031293) #23	ENSPPAG00000038445 #24	GRID2IP (ENSPPAG00000004060) #25	ZDHHC4 (ENSPPAG00000030859) #26	ENSPPAG00000018724	ENSPPAG00000027476 #27	ZNF853 (ENSPPAG00000036068) #28	ZNF12 (ENSPPAG00000029109) #30	ENSPPAG00000033351 #31	ENSPPAG00000038166 #12	ENSPPAG00000008012	ENSPPAG00000038462	ENSPPAG00000033611	C1GALT1 (ENSPPAG00000029814)	ENSPPAG00000010276
Cercopithecidae	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.k.b #22
Rhinopithecus	ANCESTRAL SPECIES	275							ENSGT00390000004713.c #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.b #22	ENSGT00940000153500.a.a.k.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30
Black snub-nosed monkey	MODERN SPECIES	2629									PMS2 (ENSRBIG00000039533) #14	AIMP2 (ENSRBIG00000022538) #16	ANKRD61 (ENSRBIG00000032100) #17	EIF2AK1 (ENSRBIG00000030382) #18	USP42 (ENSRBIG00000037425) #19	CYTH3 (ENSRBIG00000037311) #20	ENSRBIG00000041406	ENSRBIG00000028419 #22	DAGLB (ENSRBIG00000007723) #23	KDELR2 (ENSRBIG00000036725) #24	GRID2IP (ENSRBIG00000044379) #25	ZDHHC4 (ENSRBIG00000039493) #26	ENSRBIG00000025504	INTS15 (ENSRBIG00000037129) #27	ZNF853 (ENSRBIG00000031607) #28	ZNF316 (ENSRBIG00000028843) #29	ZNF12 (ENSRBIG00000033547) #30
Cercopithecinae	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.k.b #22
Cercopithecinae_a	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.k.b #22
Macaca	ANCESTRAL SPECIES	91															ENSGT00390000014156.c	ENSGT00940000153500.a.a.k.b #22
Macaca_a	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.k.b #22
Rhesus	MODERN SPECIES	13	BRI3 (ENSMMUG00000049558)	TECPR1 (ENSMMUG00000015479) #8	LMTK2 (ENSMMUG00000015477) #10	ENSMMUG00000054767	ENSMMUG00000064257	OCM (ENSMMUG00000049706) #11	ENSMMUG00000007970 #12	ENSMMUG00000030422 #13	PMS2 (ENSMMUG00000030421) #14	AIMP2 (ENSMMUG00000030420) #16	ANKRD61 (ENSMMUG00000045015) #17	EIF2AK1 (ENSMMUG00000030419) #18	USP42 (ENSMMUG00000020321) #19	CYTH3 (ENSMMUG00000003167) #20	FAM220A (ENSMMUG00000014753)	RAC1 (ENSMMUG00000021075) #22	DAGLB (ENSMMUG00000010292) #23	KDELR2 (ENSMMUG00000030415) #24	ENSMMUG00000057114	GRID2IP (ENSMMUG00000021839) #25	ZDHHC4 (ENSMMUG00000015545) #26	INTS15 (ENSMMUG00000015546) #27	ZNF853 (ENSMMUG00000038892) #28	ENSMMUG00000064966	ZNF316 (ENSMMUG00000049742) #29	ZNF12 (ENSMMUG00000012343) #30	ENSMMUG00000022624 #31	ENSMMUG00000062930 #12	ENSMMUG00000056983 #11	RNF216 (ENSMMUG00000000182) #34	FSCN1 (ENSMMUG00000004282) #35
Cercopithecinae_b	ANCESTRAL SPECIES	36	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713.c.h #12	ENSGT00390000004713.c.g #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156.c	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.b #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A.a.c.a #31
Cercopithecinae_d	ANCESTRAL SPECIES	75	ENSGT00940000153560.b.b.a	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713.c.g #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.b #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A.a.d #31
Sooty mangabey	MODERN SPECIES	630								ENSCATG00000036079 #13	PMS2 (ENSCATG00000031915) #14	AIMP2 (ENSCATG00000031716) #16	EIF2AK1 (ENSCATG00000035736) #18	ANKRD61 (ENSCATG00000033486) #17	USP42 (ENSCATG00000038486) #19	CYTH3 (ENSCATG00000014551) #20	ENSCATG00000039408	ENSCATG00000030206 #22	DAGLB (ENSCATG00000033180) #23	KDELR2 (ENSCATG00000036365) #24	GRID2IP (ENSCATG00000034128) #25	ZDHHC4 (ENSCATG00000025695) #26	ENSCATG00000028674	INTS15 (ENSCATG00000030108) #27	ZNF853 (ENSCATG00000034604) #28	ZNF316 (ENSCATG00000039607) #29	ZNF12 (ENSCATG00000036359) #30	ENSCATG00000034408 #13	ENSCATG00000011606 #12	ENSCATG00000042940 #11	LMTK2 (ENSCATG00000037130) #10	ENSCATG00000017491	BHLHA15 (ENSCATG00000021737) #9
Drill	MODERN SPECIES	1216									PMS2 (ENSMLEG00000031920) #14	AIMP2 (ENSMLEG00000037709) #16	EIF2AK1 (ENSMLEG00000030525) #18	ANKRD61 (ENSMLEG00000039931) #17	USP42 (ENSMLEG00000028936) #19	CYTH3 (ENSMLEG00000041201) #20	ENSMLEG00000034114	ENSMLEG00000002652 #22	DAGLB (ENSMLEG00000029004) #23	KDELR2 (ENSMLEG00000037948) #24	GRID2IP (ENSMLEG00000028015) #25
Simiiformes	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.l #22
Catarrhini	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.l #22
Hominoidea	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.l #22
Gibbon	MODERN SPECIES	11	GINS3 (ENSNLEG00000034569)	NDRG4 (ENSNLEG00000003445)	SETD6 (ENSNLEG00000030055)	CNOT1 (ENSNLEG00000003566)	SLC38A7 (ENSNLEG00000003812)	CDH8 (ENSNLEG00000003851)	CDH11 (ENSNLEG00000003882)	CDH5 (ENSNLEG00000003928)	BEAN1 (ENSNLEG00000033811)	TK2 (ENSNLEG00000035698)	ENSNLEG00000030398	CMTM1 (ENSNLEG00000003970)	CMTM2 (ENSNLEG00000004001)	ENSNLEG00000004003	ENSNLEG00000004009	ENSNLEG00000034866 #22	DYNC1LI2 (ENSNLEG00000004011)	TERB1 (ENSNLEG00000004017)	NAE1 (ENSNLEG00000004047)	CA7 (ENSNLEG00000030802)	CDH16 (ENSNLEG00000004109)	RRAD (ENSNLEG00000004167)	CIAO2B (ENSNLEG00000004172)	ENSNLEG00000004181	CES2 (ENSNLEG00000030391)	CES3 (ENSNLEG00000004206)	ENSNLEG00000004228	CBFB (ENSNLEG00000004277)	PHAF1 (ENSNLEG00000004306)	TRADD (ENSNLEG00000004328)	FBXL8 (ENSNLEG00000004335)
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	1520																ENSTSYG00000001618 #22	DAGLB (ENSTSYG00000003239) #23	KDELR2 (ENSTSYG00000000650) #24	GRID2IP (ENSTSYG00000027905) #25	ZDHHC4 (ENSTSYG00000007686) #26	INTS15 (ENSTSYG00000007701) #27
Tarsier	MODERN SPECIES	4646																ENSTSYG00000025453 #22
Strepsirrhini	ANCESTRAL SPECIES	14	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000170143	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b	ENSGT00510000048032 #34	ENSGT00910000147936	ENSGT00950000183157.a.a.b #35	ENSGT00950000182960.a.a.a.a.b.rb #36
Lemuriformes	ANCESTRAL SPECIES	6	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000170143	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b.db #19	ENSGT00940000154596.b.eb #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154303.A.b #33	ENSGT00510000048032 #34	ENSGT00910000147936	ENSGT00950000183157.a.a.b #35	ENSGT00950000182960.a.a.a.a.b.rb #36	ENSGT00390000015109 #37
Mouse lemur	MODERN SPECIES	8	TECPR1 (ENSMICG00000002874) #8	BHLHA15 (ENSMICG00000036615) #9	LMTK2 (ENSMICG00000002866) #10	ENSMICG00000046401	ENSMICG00000042503 #11	ENSMICG00000012751 #12	ENSMICG00000012768 #13	PMS2 (ENSMICG00000012794) #14	AIMP2 (ENSMICG00000012810) #16	ANKRD61 (ENSMICG00000012853) #17	EIF2AK1 (ENSMICG00000012815) #18	ENSMICG00000044799 #19	ENSMICG00000037327 #19	CYTH3 (ENSMICG00000004355) #20	ENSMICG00000004365	RAC1 (ENSMICG00000047004) #22	DAGLB (ENSMICG00000004369) #23	KDELR2 (ENSMICG00000014334) #24	GRID2IP (ENSMICG00000028041) #25	ZDHHC4 (ENSMICG00000014356) #26	INTS15 (ENSMICG00000014369) #27	ZNF853 (ENSMICG00000034424) #28	ZNF316 (ENSMICG00000045243) #29	ENSMICG00000043386	ENSMICG00000029369	ENSMICG00000008171 #30	ENSMICG00000043328	RBAK (ENSMICG00000044579) #33	ENSMICG00000045766	RNF216 (ENSMICG00000010220) #34	FSCN1 (ENSMICG00000010211) #35
Lemuriformes_a	ANCESTRAL SPECIES	16	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000170143	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b.db #19	ENSGT00940000154596.b.eb #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154303.A.b #33	ENSGT00510000048032 #34	ENSGT00910000147936	ENSGT00950000183157.a.a.b #35	ENSGT00950000182960.a.a.a.a.b.rb #36	ENSGT00390000015109 #37
Coquerels sifaka	MODERN SPECIES	155	NPTX2 (ENSPCOG00000024897)	BAIAP2L1 (ENSPCOG00000022611)	BRI3 (ENSPCOG00000000280) #7	TECPR1 (ENSPCOG00000015825) #8	LMTK2 (ENSPCOG00000025104) #10	ENSPCOG00000017766 #11	ENSPCOG00000025277 #12	ENSPCOG00000024104 #13	PMS2 (ENSPCOG00000019462) #14	AIMP2 (ENSPCOG00000024068) #16	EIF2AK1 (ENSPCOG00000024245) #18	ANKRD61 (ENSPCOG00000015357) #17	USP42 (ENSPCOG00000018641) #19	CYTH3 (ENSPCOG00000024782) #20	ENSPCOG00000024195	RAC1 (ENSPCOG00000020411) #22	DAGLB (ENSPCOG00000001509) #23	KDELR2 (ENSPCOG00000019889) #24	GRID2IP (ENSPCOG00000025659) #25	ZDHHC4 (ENSPCOG00000023144) #26	INTS15 (ENSPCOG00000007596) #27	ZNF853 (ENSPCOG00000000221) #28	ZNF316 (ENSPCOG00000026860) #29	ENSPCOG00000027965 #30	RBAK (ENSPCOG00000028132) #33	RNF216 (ENSPCOG00000013560) #34	FSCN1 (ENSPCOG00000014914) #35	ACTB (ENSPCOG00000013116) #36	FBXL18 (ENSPCOG00000018422) #37	TNRC18 (ENSPCOG00000023756)	SLC29A4 (ENSPCOG00000010272)
Greater bamboo lemur	MODERN SPECIES	522	BHLHA15 (ENSPSMG00000003426) #9	LMTK2 (ENSPSMG00000003391) #10	ENSPSMG00000003348 #11	ENSPSMG00000003259 #12	ENSPSMG00000003157	ENSPSMG00000003153 #13	PMS2 (ENSPSMG00000002935) #14	AIMP2 (ENSPSMG00000002869) #16	ANKRD61 (ENSPSMG00000002858) #17	EIF2AK1 (ENSPSMG00000002851) #18	ENSPSMG00000002814 #19	CYTH3 (ENSPSMG00000002677) #20	FAM220A (ENSPSMG00000002627)	ENSPSMG00000002622	ENSPSMG00000002616	RAC1 (ENSPSMG00000002582) #22	KDELR2 (ENSPSMG00000002526) #24	GRID2IP (ENSPSMG00000002509) #25	ZDHHC4 (ENSPSMG00000002484) #26	INTS15 (ENSPSMG00000002471) #27	ZNF853 (ENSPSMG00000002441) #28	ZNF316 (ENSPSMG00000002435) #29	ENSPSMG00000002122	ZNF12 (ENSPSMG00000001838) #30
Bushbaby	MODERN SPECIES	207															ENSOGAG00000025751	RAC1 (ENSOGAG00000017027) #22	DAGLB (ENSOGAG00000017029) #23	KDELR2 (ENSOGAG00000025999) #24	GRID2IP (ENSOGAG00000034523) #25	ZDHHC4 (ENSOGAG00000000437) #26	INTS15 (ENSOGAG00000000438) #27	ZNF316 (ENSOGAG00000028380) #29	ENSOGAG00000025231	ZNF12 (ENSOGAG00000028373) #30	RBAK (ENSOGAG00000006946) #33	ENSOGAG00000027519	RNF216 (ENSOGAG00000006315) #34	FSCN1 (ENSOGAG00000025060) #35	ENSOGAG00000008348 #36	FBXL18 (ENSOGAG00000008341) #37	TNRC18 (ENSOGAG00000027824)
Laurasiatheria	ANCESTRAL SPECIES	10	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000170143	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00960000187139	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35
Laurasiatheria_a	ANCESTRAL SPECIES	12	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000170143	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00960000187139	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35
Artiodactyla	ANCESTRAL SPECIES	10	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00960000187139	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35	ENSGT00950000182960.a.a.a.a.b.rb #36
Suina	ANCESTRAL SPECIES	46	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35	ENSGT00950000182960.a.a.a.a.b.rb #36	ENSGT00390000015109 #37
Pig	MODERN SPECIES	11	BAIAP2L1 (ENSSSCG00000007602)	BRI3 (ENSSSCG00000037605) #7	TECPR1 (ENSSSCG00000007601) #8	BHLHA15 (ENSSSCG00000038489) #9	LMTK2 (ENSSSCG00000007599) #10	ENSSSCG00000007596 #11	ENSSSCG00000025940 #12	ENSSSCG00000007589 #13	PMS2 (ENSSSCG00000007590) #14	AIMP2 (ENSSSCG00000024245) #16	ANKRD61 (ENSSSCG00000007593) #17	EIF2AK1 (ENSSSCG00000007592) #18	USP42 (ENSSSCG00000032705) #19	CYTH3 (ENSSSCG00000034768) #20	ENSSSCG00000047832	RAC1 (ENSSSCG00000035090) #22	DAGLB (ENSSSCG00000027288) #23	KDELR2 (ENSSSCG00000031432) #24	GRID2IP (ENSSSCG00000037070) #25	ZDHHC4 (ENSSSCG00000039719) #26	INTS15 (ENSSSCG00000036192) #27	ZNF853 (ENSSSCG00000037890) #28	ZNF316 (ENSSSCG00000023378) #29	ENSSSCG00000008665	ZNF12 (ENSSSCG00000034517) #30	ENSSSCG00000032257 #31	RBAK (ENSSSCG00000008668) #33	ENSSSCG00000031365	ENSSSCG00000052755	RNF216 (ENSSSCG00000021285) #34	FSCN1 (ENSSSCG00000007586) #35
Chacoan peccary	MODERN SPECIES	833	BRI3 (ENSCWAG00000010841) #7	TECPR1 (ENSCWAG00000010756) #8	BHLHA15 (ENSCWAG00000010732) #9	LMTK2 (ENSCWAG00000010619) #10	ENSCWAG00000010569 #11	ENSCWAG00000010481 #12	ENSCWAG00000010359 #13	PMS2 (ENSCWAG00000010164) #14	AIMP2 (ENSCWAG00000010081) #16	ANKRD61 (ENSCWAG00000010045) #17	EIF2AK1 (ENSCWAG00000010001) #18	USP42 (ENSCWAG00000009829) #19	CYTH3 (ENSCWAG00000009772) #20	FAM220A (ENSCWAG00000009757)	ENSCWAG00000009732	RAC1 (ENSCWAG00000009644) #22	DAGLB (ENSCWAG00000009568) #23	KDELR2 (ENSCWAG00000009516) #24	GRID2IP (ENSCWAG00000008513) #25	ENSCWAG00000008394 #26	INTS15 (ENSCWAG00000008254) #27	ZNF316 (ENSCWAG00000008130) #29	ZNF12 (ENSCWAG00000007983) #30	ENSCWAG00000007902 #31	RBAK (ENSCWAG00000007855) #33	RNF216 (ENSCWAG00000020194) #34	FSCN1 (ENSCWAG00000020177) #35	ACTB (ENSCWAG00000020160) #36	FBXL18 (ENSCWAG00000020141) #37	TNRC18 (ENSCWAG00000019752)	SLC29A4 (ENSCWAG00000019677)
Artiodactyla_a	ANCESTRAL SPECIES	10	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00960000187139	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35	ENSGT00950000182960.a.a.a.a.b.rb #36
Artiodactyla_b	ANCESTRAL SPECIES	9	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00960000187139	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35	ENSGT00950000182960.a.a.a.a.b.rb #36	ENSGT00390000015109 #37
Cetacea	ANCESTRAL SPECIES	3	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT00940000154303.C ##30	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b.u #35	ENSGT00950000182960.a.a.a.a.b.rb #36	ENSGT00390000015109 #37
Odontoceti	ANCESTRAL SPECIES	3	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT00940000154303.C ##30	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b.u #35	ENSGT00950000182960.a.a.a.a.b.rb #36	ENSGT00390000015109 #37
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES	5	BRI3 (ENSPCTG00005013964) #7	TECPR1 (ENSPCTG00005014032) #8	BHLHA15 (ENSPCTG00005014363) #9	LMTK2 (ENSPCTG00005014425) #10	OCM2 (ENSPCTG00005014893) #11	CCZ1 (ENSPCTG00005014972) #12	ENSPCTG00005015255 #13	PMS2 (ENSPCTG00005015618) #14	AIMP2 (ENSPCTG00005015738) #16	EIF2AK1 (ENSPCTG00005015824) #18	ENSPCTG00005015924	USP42 (ENSPCTG00005016015) #19	CYTH3 (ENSPCTG00005016072) #20	FAM220A (ENSPCTG00005016247)	ENSPCTG00005016265	RAC1 (ENSPCTG00005016300) #22	DAGLB (ENSPCTG00005016386) #23	ZNF316 (ENSPCTG00005016544) #29	ENSPCTG00005016653	ENSPCTG00005016669	C14H7orf26 (ENSPCTG00005016757) #27	ZDHHC4 (ENSPCTG00005016951) #26	RBAK (ENSPCTG00005016990) #33	ENSPCTG00005017024 ##30	RNF216 (ENSPCTG00005017081) #34	ACTB (ENSPCTG00005017252) #36	TNRC18 (ENSPCTG00005017434)	MMD2 (ENSPCTG00005017807)	RADIL (ENSPCTG00005017969)	AP5Z1 (ENSPCTG00005018171)	FOXK1 (ENSPCTG00005018245)
Sperm whale	MODERN SPECIES		ACTL6A (ENSPCTG00005002626)	MRPL47 (ENSPCTG00005002655)	NDUFB5 (ENSPCTG00005002691)	USP13 (ENSPCTG00005002736)	PEX5L (ENSPCTG00005002908)	ENSPCTG00005003697	ENSPCTG00005003702	TTC14 (ENSPCTG00005003714)	CCDC39 (ENSPCTG00005003737)	FXR1 (ENSPCTG00005003785)	ENSPCTG00005003919	SOX2 (ENSPCTG00005003937)	ENSPCTG00005003941	ENSPCTG00005003956	ATP11B (ENSPCTG00005004005)	ENSPCTG00005005564 #22	DCUN1D1 (ENSPCTG00005005589)	ENSPCTG00005005649	MCCC1 (ENSPCTG00005005715)	LAMP3 (ENSPCTG00005005882)	MCF2L2 (ENSPCTG00005005943)	B3GNT5 (ENSPCTG00005005989)	KLHL6 (ENSPCTG00005006059)	YEATS2 (ENSPCTG00005006122)	MAP6D1 (ENSPCTG00005006390)	PARL (ENSPCTG00005006429)	ENSPCTG00005006473	ABCC5 (ENSPCTG00005006520)	ENSPCTG00005006600	ENSPCTG00005006643	ENSPCTG00005006684
Odontoceti_a	ANCESTRAL SPECIES	3	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT00940000154303.C ##30	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b.u #35	ENSGT00950000182960.a.a.a.a.b.rb #36	ENSGT00390000015109 #37
Dolphin	MODERN SPECIES	482																RAC1 (ENSTTRG00000004989) #22	DAGLB (ENSTTRG00000004990) #23	KDELR2 (ENSTTRG00000004994) #24	GRID2IP (ENSTTRG00000004998) #25	ZDHHC4 (ENSTTRG00000005001) #26	INTS15 (ENSTTRG00000005003) #27	ZNF316 (ENSTTRG00000005005) #29	ZNF12 (ENSTTRG00000005007) #30
Odontoceti_b	ANCESTRAL SPECIES	3	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000154277.a.b.b.m.a.a.b	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00940000154509	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT00940000154303.C ##30	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b.u #35	ENSGT00950000182960.a.a.a.a.b.rb #36	ENSGT00390000015109 #37
Monodontidae	ANCESTRAL SPECIES	1	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000154277.a.b.b.m.a.a.b	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b.u #35	ENSGT00950000182960.a.a.a.a.b.rb #36	ENSGT00390000015109 #37	ENSGT00940000157099
Narwhal	MODERN SPECIES	299	TECPR1 (ENSMMNG00015003675) #8	BHLHA15 (ENSMMNG00015003745) #9	LMTK2 (ENSMMNG00015003763) #10	ENSMMNG00015003789 #11	ENSMMNG00015003818 #12	ENSMMNG00015003873 #13	ENSMMNG00015003915	PMS2 (ENSMMNG00015003939) #14	AIMP2 (ENSMMNG00015003978) #16	EIF2AK1 (ENSMMNG00015004004) #18	USP42 (ENSMMNG00015004036) #19	CYTH3 (ENSMMNG00015004066) #20	ENSMMNG00015004084	FAM220A (ENSMMNG00015004094)	ENSMMNG00015004103	RAC1 (ENSMMNG00015004118) #22	DAGLB (ENSMMNG00015004155) #23	KDELR2 (ENSMMNG00015004183) #24	GRID2IP (ENSMMNG00015004237) #25	ZDHHC4 (ENSMMNG00015004329) #26	INTS15 (ENSMMNG00015004351) #27	ZNF853 (ENSMMNG00015004374) #28	ZNF316 (ENSMMNG00015004386) #29	ENSMMNG00015004399	ZNF12 (ENSMMNG00015004410) #30	RBAK (ENSMMNG00015004421) #33	RNF216 (ENSMMNG00015004436) #34	FSCN1 (ENSMMNG00015004457) #35	ACTB (ENSMMNG00015004465) #36	FBXL18 (ENSMMNG00015004476) #37	TNRC18 (ENSMMNG00015000119)
Beluga whale	MODERN SPECIES	48	TECPR1 (ENSDLEG00000020413) #8	BHLHA15 (ENSDLEG00000020448) #9	LMTK2 (ENSDLEG00000020452) #10	ENSDLEG00000020471 #11	ENSDLEG00000020475 #12	ENSDLEG00000020481	ENSDLEG00000020484	PMS2 (ENSDLEG00000020496) #14	AIMP2 (ENSDLEG00000020551) #16	EIF2AK1 (ENSDLEG00000020556) #18	USP42 (ENSDLEG00000020630) #19	CYTH3 (ENSDLEG00000020671) #20	RPL22L1 (ENSDLEG00000020716)	FAM220A (ENSDLEG00000020719)	ENSDLEG00000020721	RAC1 (ENSDLEG00000020724) #22	DAGLB (ENSDLEG00000020750) #23	KDELR2 (ENSDLEG00000020768) #24	GRID2IP (ENSDLEG00000020777) #25	ZDHHC4 (ENSDLEG00000020816) #26	CUNH7orf26 (ENSDLEG00000020822) #27	ZNF316 (ENSDLEG00000020834) #29	ENSDLEG00000020842	ZNF12 (ENSDLEG00000020849) #30	ENSDLEG00000020858 #31	RBAK (ENSDLEG00000020874) #33	ENSDLEG00000020890	ENSDLEG00000020897 ##30	RNF216 (ENSDLEG00000020911) #34	FSCN1 (ENSDLEG00000020922) #35	ACTB (ENSDLEG00000020930) #36
Vaquita	MODERN SPECIES	6	BHLHA15 (ENSPSNG00000012595) #9	LMTK2 (ENSPSNG00000012631) #10	ENSPSNG00000012777 #11	ENSPSNG00000012850 #12	ENSPSNG00000013097 #13	ENSPSNG00000013383	PMS2 (ENSPSNG00000013449) #14	AIMP2 (ENSPSNG00000013573) #16	EIF2AK1 (ENSPSNG00000013745) #18	ENSPSNG00000013966	USP42 (ENSPSNG00000013999) #19	CYTH3 (ENSPSNG00000014047) #20	ENSPSNG00000014115	FAM220A (ENSPSNG00000014179)	ENSPSNG00000014218	RAC1 (ENSPSNG00000014278) #22	DAGLB (ENSPSNG00000014394) #23	ENSPSNG00000014592	KDELR2 (ENSPSNG00000014657) #24	GRID2IP (ENSPSNG00000014825) #25	ZDHHC4 (ENSPSNG00000015850) #26	INTS15 (ENSPSNG00000015900) #27	ZNF853 (ENSPSNG00000015959) #28	ZNF316 (ENSPSNG00000016002) #29	ZNF12 (ENSPSNG00000016057) #30	ENSPSNG00000016093 #31	ENSPSNG00000016180 #31	RBAK (ENSPSNG00000016251) #33	ENSPSNG00000016310	ENSPSNG00000016330 ##30	RNF216 (ENSPSNG00000016427) #34
Blue whale	MODERN SPECIES	6	TECPR1 (ENSBMSG00010015935) #8	BHLHA15 (ENSBMSG00010015945) #9	LMTK2 (ENSBMSG00010015958) #10	ENSBMSG00010015991 #11	ENSBMSG00010016031 #12	PMS2 (ENSBMSG00010016204) #14	ENSBMSG00010016495	AIMP2 (ENSBMSG00010016522) #16	EIF2AK1 (ENSBMSG00010016567) #18	ANKRD61 (ENSBMSG00010016589) #17	ENSBMSG00010016626 #19	CYTH3 (ENSBMSG00010016657) #20	FAM220A (ENSBMSG00010016767)	ENSBMSG00010016778	ENSBMSG00010016792	RAC1 (ENSBMSG00010016821) #22	DAGLB (ENSBMSG00010016888) #23	KDELR2 (ENSBMSG00010016947) #24	GRID2IP (ENSBMSG00010017008) #25	ZDHHC4 (ENSBMSG00010017231) #26	INTS15 (ENSBMSG00010017272) #27	ZNF853 (ENSBMSG00010017356) #28	ZNF316 (ENSBMSG00010017370) #29	ENSBMSG00010017391	ENSBMSG00010017413 #30	ENSBMSG00010017442 #31	RBAK (ENSBMSG00010017485) #33	ENSBMSG00010017515 ##30	RNF216 (ENSBMSG00010017535) #34	ENSBMSG00010017603 #35	ENSBMSG00010017637 #36
Pecora	ANCESTRAL SPECIES	10	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000004552.c.a	ENSGT00390000014156	ENSGT00960000187139	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35	ENSGT00950000182960.a.a.a.a.b.rb #36	ENSGT00390000015109 #37
Percora_a	ANCESTRAL SPECIES	9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014547.c.l	ENSGT00390000004552.c.a	ENSGT00390000014156	ENSGT00960000187139	ENSGT00390000014547.c.k	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35	ENSGT00950000182960.a.a.a.a.b.rb #36	ENSGT00390000015109 #37
Siberian musk deer	MODERN SPECIES	1198	LPIN3 (ENSMMSG00000021376)	EMILIN3 (ENSMMSG00000021335)	CHD6 (ENSMMSG00000021276)	PTPRT (ENSMMSG00000020333)	SRSF6 (ENSMMSG00000020249)	L3MBTL1 (ENSMMSG00000020153)	SGK2 (ENSMMSG00000020060)	IFT52 (ENSMMSG00000019966)	MYBL2 (ENSMMSG00000019605)	GTSF1L (ENSMMSG00000019571)	ENSMMSG00000019561	TOX2 (ENSMMSG00000019474)	JPH2 (ENSMMSG00000019438)	OSER1 (ENSMMSG00000019399)	GDAP1L1 (ENSMMSG00000019250)	ENSMMSG00000019217 #22	FITM2 (ENSMMSG00000019203)	R3HDML (ENSMMSG00000019173)	HNF4A (ENSMMSG00000018701)	TTPAL (ENSMMSG00000018623)	SERINC3 (ENSMMSG00000018583)	ENSMMSG00000018568	ADA (ENSMMSG00000018511)	CCN5 (ENSMMSG00000018462)	KCNK15 (ENSMMSG00000018432)	RIMS4 (ENSMMSG00000018389)	YWHAB (ENSMMSG00000018362)	PABPC1L (ENSMMSG00000018315)	TOMM34 (ENSMMSG00000018270)	STK4 (ENSMMSG00000018196)	KCNS1 (ENSMMSG00000018164)
Bovidae	ANCESTRAL SPECIES	11	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000004552.c.a	ENSGT00390000014156	ENSGT00960000187139	ENSGT00390000014547.c.k	ENSGT00390000014547.c.l	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35	ENSGT00950000182960.a.a.a.a.b.rb #36	ENSGT00390000015109 #37
Caprinae	ANCESTRAL SPECIES	7	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000004552.c.a	ENSGT00390000014156	ENSGT00390000014547.c.k.b	ENSGT00390000014547.c.l	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35	ENSGT00950000182960.a.a.a.a.b.rb #36	ENSGT00390000015109 #37
Rambouillet Sheep	MODERN SPECIES	16	BRI3 (ENSOARG00020023331) #7	TECPR1 (ENSOARG00020023364) #8	BHLHA15 (ENSOARG00020023426) #9	ENSOARG00020023523 #11	ENSOARG00020023544 #12	ENSOARG00020023637 #13	PMS2 (ENSOARG00020023689) #14	AIMP2 (ENSOARG00020023890) #16	EIF2AK1 (ENSOARG00020023922) #18	ANKRD61 (ENSOARG00020023934) #17	ENSOARG00020023952 #31	CYTH3 (ENSOARG00020023985) #20	ENSOARG00020024042	ENSOARG00020024050	ENSOARG00020024065	RAC1 (ENSOARG00020006453) #22	DAGLB (ENSOARG00020006576) #23	KDELR2 (ENSOARG00020006875) #24	GRID2IP (ENSOARG00020006999) #25	ZDHHC4 (ENSOARG00020007779) #26	INTS15 (ENSOARG00020007817) #27	ZNF853 (ENSOARG00020007948) #28	ZNF316 (ENSOARG00020007995) #29	ZNF12 (ENSOARG00020008082) #30	ENSOARG00020008271 #31	RBAK (ENSOARG00020008438) #33	ENSOARG00020008480	RNF216 (ENSOARG00020008508) #34	FSCN1 (ENSOARG00020008659) #35	ACTB (ENSOARG00020008714) #36	FBXL18 (ENSOARG00020008770) #37
Goat	MODERN SPECIES	17	BRI3 (ENSCHIG00000005545) #7	TECPR1 (ENSCHIG00000025300) #8	BHLHA15 (ENSCHIG00000008225) #9	LMTK2 (ENSCHIG00000023995) #10	ENSCHIG00000026637 #11	ENSCHIG00000016566 #12	ENSCHIG00000021579 #13	PMS2 (ENSCHIG00000017062) #14	AIMP2 (ENSCHIG00000014822) #16	EIF2AK1 (ENSCHIG00000014254) #18	ANKRD61 (ENSCHIG00000014423) #17	USP42 (ENSCHIG00000017502) #19	CYTH3 (ENSCHIG00000025012) #20	ENSCHIG00000013157	ENSCHIG00000012626	RAC1 (ENSCHIG00000023897) #22	DAGLB (ENSCHIG00000025751) #23	KDELR2 (ENSCHIG00000016693) #24	GRID2IP (ENSCHIG00000019697) #25	ZDHHC4 (ENSCHIG00000011078) #26	INTS15 (ENSCHIG00000023779) #27	ZNF853 (ENSCHIG00000026318) #28	ZNF316 (ENSCHIG00000024346) #29	ZNF12 (ENSCHIG00000011026) #30	ENSCHIG00000019239 #31	RBAK (ENSCHIG00000026024) #33	ENSCHIG00000009168	RNF216 (ENSCHIG00000020520) #34	FSCN1 (ENSCHIG00000013676) #35	ACTB (ENSCHIG00000013316) #36	FBXL18 (ENSCHIG00000001815) #37
Bovinae	ANCESTRAL SPECIES	7	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000004552.c.a	ENSGT00390000014547.c.k	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT00940000162678.c.b	ENSGT00390000006264.d	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35	ENSGT00740000116898
American bison	MODERN SPECIES	3140	BAIAP2L1 (ENSBBBG00000010154)	ENSBBBG00000001713	BRI3 (ENSBBBG00000010143) #7	BHLHA15 (ENSBBBG00000010137) #9	LMTK2 (ENSBBBG00000010132) #10	ENSBBBG00000010109 #11	ENSBBBG00000010103 #12	ENSBBBG00000006928 #13	PMS2 (ENSBBBG00000001701) #14	AIMP2 (ENSBBBG00000010040) #16	EIF2AK1 (ENSBBBG00000010025) #18	ANKRD61 (ENSBBBG00000010019) #17	ENSBBBG00000010015 #19	CYTH3 (ENSBBBG00000010008) #20	ENSBBBG00000009985	RAC1 (ENSBBBG00000008427) #22	DAGLB (ENSBBBG00000001669) #23	KDELR2 (ENSBBBG00000001663) #24	GRID2IP (ENSBBBG00000009936) #25	ZDHHC4 (ENSBBBG00000009898) #26	INTS15 (ENSBBBG00000009885) #27	ENSBBBG00000009880 #29	ZNF12 (ENSBBBG00000006926) #30	ENSBBBG00000009865 #31	RBAK (ENSBBBG00000009857) #33	ENSBBBG00000009853	RNF216 (ENSBBBG00000009848) #34	FSCN1 (ENSBBBG00000009842) #35	ENSBBBG00000009839	ACTB (ENSBBBG00000009838) #36	FBXL18 (ENSBBBG00000009835) #37
Bos	ANCESTRAL SPECIES	9	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000004552.c.a	ENSGT00390000014547.c.k	ENSGT00960000187139	ENSGT00390000014547.c.l	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b	ENSGT00940000162678.c.b	ENSGT00960000191467	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35
Bos_b	ANCESTRAL SPECIES	6	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000004552.c.a	ENSGT00390000014547.c.k	ENSGT00960000187139	ENSGT00390000014547.c.l	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b	ENSGT00940000162678.c.b	ENSGT00960000191467	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35
Hybrid Bos Indicus	MODERN SPECIES	17	BHLHA15 (ENSBIXG00005015363) #9	BAIAP2L1 (ENSBIXG00005015423)	LMTK2 (ENSBIXG00005002294) #10	ENSBIXG00005015523 #11	ENSBIXG00005015615 #12	ENSBIXG00005015885 #13	PMS2 (ENSBIXG00005002516) #14	AIMP2 (ENSBIXG00005015986) #16	ANKRD61 (ENSBIXG00005016000) #17	EIF2AK1 (ENSBIXG00005016011) #18	ENSBIXG00005016025	USP42 (ENSBIXG00005016049) #19	CYTH3 (ENSBIXG00005016102) #20	ENSBIXG00005007461	ENSBIXG00005016165	RAC1 (ENSBIXG00005016208) #22	DAGLB (ENSBIXG00005016269) #23	KDELR2 (ENSBIXG00005016301) #24	GRID2IP (ENSBIXG00005016633) #25	ZDHHC4 (ENSBIXG00005016695) #26	INTS15 (ENSBIXG00005016776) #27	ZNF853 (ENSBIXG00005016791) #28	ZNF316 (ENSBIXG00005005424) #29	ZNF12 (ENSBIXG00005016846) #30	ENSBIXG00005002730 #31	RBAK (ENSBIXG00005016874) #33	ENSBIXG00005016887	ENSBIXG00005016906	RNF216 (ENSBIXG00005016940) #34	FSCN1 (ENSBIXG00005016968) #35	ACTB (ENSBIXG00005017151) #36
Cow	MODERN SPECIES	17	TECPR1 (ENSBTAG00000051678) #8	BHLHA15 (ENSBTAG00000046010) #9	LMTK2 (ENSBTAG00000004135) #10	ENSBTAG00000046943 #11	CCZ1 (ENSBTAG00000003288) #12	RSPH10B (ENSBTAG00000005908) #13	PMS2 (ENSBTAG00000007364) #14	AIMP2 (ENSBTAG00000007367) #16	EIF2AK1 (ENSBTAG00000007370) #18	ANKRD61 (ENSBTAG00000007372) #17	USP42 (ENSBTAG00000000725) #19	CYTH3 (ENSBTAG00000007384) #20	ENSBTAG00000046517	ENSBTAG00000051511	ENSBTAG00000053719	RAC1 (ENSBTAG00000053390) #22	DAGLB (ENSBTAG00000009236) #23	KDELR2 (ENSBTAG00000009237) #24	GRID2IP (ENSBTAG00000003308) #25	ZDHHC4 (ENSBTAG00000009547) #26	INTS15 (ENSBTAG00000021248) #27	ZNF853 (ENSBTAG00000053996) #28	ZNF316 (ENSBTAG00000003953) #29	ZNF12 (ENSBTAG00000039782) #30	ENSBTAG00000040014 #31	RBAK (ENSBTAG00000010291) #33	OR10AH1 (ENSBTAG00000005600)	ENSBTAG00000048231	RNF216 (ENSBTAG00000017175) #34	FSCN1 (ENSBTAG00000003191) #35	ENSBTAG00000047781
Bos_a	ANCESTRAL SPECIES	35	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000004552.c.a	ENSGT00390000014547.c.k	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT00940000162678.c.b	ENSGT00960000191467	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35	ENSGT00740000116898	ENSGT00950000182960.a.a.a.a.b.rb #36
Domestic yak	MODERN SPECIES	18	BHLHA15 (ENSBGRG00000025237) #9	LMTK2 (ENSBGRG00000025270) #10	ENSBGRG00000025381 #11	ENSBGRG00000025431 #12	ENSBGRG00000025625 #13	PMS2 (ENSBGRG00000025668) #14	AIMP2 (ENSBGRG00000025683) #16	EIF2AK1 (ENSBGRG00000025699) #18	ANKRD61 (ENSBGRG00000025716) #17	USP42 (ENSBGRG00000025739) #19	ENSBGRG00000025761	CYTH3 (ENSBGRG00000025775) #20	ENSBGRG00000025810	ENSBGRG00000025813	ENSBGRG00000025818	RAC1 (ENSBGRG00000025825) #22	DAGLB (ENSBGRG00000025849) #23	KDELR2 (ENSBGRG00000025874) #24	GRID2IP (ENSBGRG00000025896) #25	INTS15 (ENSBGRG00000025912) #27	ENSBGRG00000016685 #29	ZNF316 (ENSBGRG00000016721) #29	ZNF12 (ENSBGRG00000016763) #30	ENSBGRG00000016800 #31	RBAK (ENSBGRG00000016858) #33	ENSBGRG00000017510	ENSBGRG00000017557	RNF216 (ENSBGRG00000017667) #34	FSCN1 (ENSBGRG00000017874) #35	ENSBGRG00000017951	ACTB (ENSBGRG00000017982) #36
Wild yak	MODERN SPECIES	1481	BHLHA15 (ENSBMUG00000014568) #9	LMTK2 (ENSBMUG00000014553) #10	ENSBMUG00000014529 #11	ENSBMUG00000014511	ENSBMUG00000014499 #12	ENSBMUG00000014408 #13	PMS2 (ENSBMUG00000014299) #14	AIMP2 (ENSBMUG00000014263) #16	ANKRD61 (ENSBMUG00000014242) #17	EIF2AK1 (ENSBMUG00000014219) #18	USP42 (ENSBMUG00000014180) #19	CYTH3 (ENSBMUG00000014119) #20	ENSBMUG00000014102	ENSBMUG00000014095	ENSBMUG00000014076	RAC1 (ENSBMUG00000014051) #22	DAGLB (ENSBMUG00000014034) #23	KDELR2 (ENSBMUG00000014010) #24	GRID2IP (ENSBMUG00000013977) #25	ZDHHC4 (ENSBMUG00000013920) #26	INTS15 (ENSBMUG00000013893) #27	ENSBMUG00000013860 #29	ZNF12 (ENSBMUG00000013839) #30	ENSBMUG00000013816 #31	RBAK (ENSBMUG00000013804) #33
Yarkand deer	MODERN SPECIES	1	BHLHA15 (ENSCHYG00000017555) #9	LMTK2 (ENSCHYG00000017591) #10	ENSCHYG00000017762 #11	ENSCHYG00000017835 #12	ENSCHYG00000018095 #13	PMS2 (ENSCHYG00000018507) #14	AIMP2 (ENSCHYG00000018933) #16	EIF2AK1 (ENSCHYG00000019050) #18	ANKRD61 (ENSCHYG00000019492) #17	USP42 (ENSCHYG00000019582) #19	CYTH3 (ENSCHYG00000019827) #20	ENSCHYG00000020209	ENSCHYG00000020241	ENSCHYG00000020267	ENSCHYG00000020298	ENSCHYG00000020349 #22	DAGLB (ENSCHYG00000020528) #23	KDELR2 (ENSCHYG00000020750) #24	GRID2IP (ENSCHYG00000020878) #25	ZDHHC4 (ENSCHYG00000021674) #26	INTS15 (ENSCHYG00000021723) #27	ZNF316 (ENSCHYG00000021888) #29	ZNF12 (ENSCHYG00000021930) #30	RBAK (ENSCHYG00000021999) #33	ENSCHYG00000022030 ##30	ENSCHYG00000022076	RNF216 (ENSCHYG00000022128) #34	FSCN1 (ENSCHYG00000022267) #35	ENSCHYG00000022350	FBXL18 (ENSCHYG00000022373) #37	TNRC18 (ENSCHYG00000022469)
Camelidae	ANCESTRAL SPECIES	24	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31
Arabian camel	MODERN SPECIES	9	BRI3 (ENSCDRG00005013667) #7	TECPR1 (ENSCDRG00005013716) #8	LMTK2 (ENSCDRG00005013925) #10	ENSCDRG00005014012 #11	ENSCDRG00005014080 #12	ENSCDRG00005014255 #13	PMS2 (ENSCDRG00005014320) #14	AIMP2 (ENSCDRG00005014622) #16	EIF2AK1 (ENSCDRG00005014748) #18	ANKRD61 (ENSCDRG00005014835) #17	USP42 (ENSCDRG00005014885) #19	CYTH3 (ENSCDRG00005015343) #20	ENSCDRG00005015633	ENSCDRG00005015668	ENSCDRG00005015699	RAC1 (ENSCDRG00005015728) #22	DAGLB (ENSCDRG00005015756) #23	KDELR2 (ENSCDRG00005015850) #24	GRID2IP (ENSCDRG00005015967) #25	ZDHHC4 (ENSCDRG00005016662) #26	INTS15 (ENSCDRG00005016697) #27	ENSCDRG00005017008 #29	ENSCDRG00005017157	ZNF12 (ENSCDRG00005017904) #30	ENSCDRG00005018000 #31	RBAK (ENSCDRG00005018032) #33	ENSCDRG00005018077	RNF216 (ENSCDRG00005018101) #34	FSCN1 (ENSCDRG00005018200) #35	ACTB (ENSCDRG00005018212) #36	FBXL18 (ENSCDRG00005018252) #37
Alpaca	MODERN SPECIES	2217																ENSVPAG00000011395 #22	ENSVPAG00000011397 #23	ENSVPAG00000011398 #24
Laurasiatheria_b	ANCESTRAL SPECIES	12	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000170143	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00960000187139	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b	ENSGT00940000154303.C ##30	ENSGT00510000048032 #34
Laurasiatheria_c	ANCESTRAL SPECIES	12	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35	ENSGT00950000182960.a.a.a.a.b.rb #36	ENSGT00390000015109 #37
Chiroptera	ANCESTRAL SPECIES	51	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154303.A.b #33	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35	ENSGT00950000182960.a.a.a.a.b.rb #36	ENSGT00390000015109 #37	ENSGT00940000157099	ENSGT00950000182898.a.b
Microchiroptera	ANCESTRAL SPECIES	48	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00940000154303.A.b #33	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35	ENSGT00950000182960.a.a.a.a.b.rb #36	ENSGT00390000015109 #37	ENSGT00940000157099	ENSGT00950000182898.a.b
Greater horseshoe bat	MODERN SPECIES	16	TECPR1 (ENSRFEG00010008694) #8	BHLHA15 (ENSRFEG00010008759) #9	LMTK2 (ENSRFEG00010008774) #10	ENSRFEG00010008833 #11	ENSRFEG00010008890 #12	ENSRFEG00010009090 #13	PMS2 (ENSRFEG00010009339) #14	AIMP2 (ENSRFEG00010009618) #16	ANKRD61 (ENSRFEG00010009693) #17	ENSRFEG00010009735	USP42 (ENSRFEG00010009774) #19	CYTH3 (ENSRFEG00010009801) #20	FAM220A (ENSRFEG00010009862)	ENSRFEG00010009875	ENSRFEG00010009899	RAC1 (ENSRFEG00010009950) #22	DAGLB (ENSRFEG00010009989) #23	GRID2IP (ENSRFEG00010010184) #25	ENSRFEG00010011143	ZDHHC4 (ENSRFEG00010011173) #26	INTS15 (ENSRFEG00010011207) #27	ZNF853 (ENSRFEG00010011438) #28	ZNF316 (ENSRFEG00010011513) #29	RBAK (ENSRFEG00010011587) #33	ENSRFEG00010011657 #30	RNF216 (ENSRFEG00010011679) #34	FSCN1 (ENSRFEG00010011743) #35	ACTB (ENSRFEG00010011816) #36	FBXL18 (ENSRFEG00010011882) #37	TNRC18 (ENSRFEG00010012024)	SLC29A4 (ENSRFEG00010012223)
Microbat	MODERN SPECIES	1145	NPTX2 (ENSMLUG00000030756)	BAIAP2L1 (ENSMLUG00000005124)	BRI3 (ENSMLUG00000029697) #7	TECPR1 (ENSMLUG00000009865) #8	BHLHA15 (ENSMLUG00000009476) #9	LMTK2 (ENSMLUG00000009437) #10	ENSMLUG00000009432 #11	ENSMLUG00000025192 #12	ENSMLUG00000009111 #13	PMS2 (ENSMLUG00000003795) #14	AIMP2 (ENSMLUG00000003807) #16	EIF2AK1 (ENSMLUG00000003813) #18	ANKRD61 (ENSMLUG00000003826) #17	USP42 (ENSMLUG00000003835) #19	CYTH3 (ENSMLUG00000003845) #20	RAC1 (ENSMLUG00000009701) #22	DAGLB (ENSMLUG00000009722) #23	KDELR2 (ENSMLUG00000009766) #24	ENSMLUG00000017011 #26	INTS15 (ENSMLUG00000012486) #27	ENSMLUG00000005596 #30	RBAK (ENSMLUG00000004409) #33	RNF216 (ENSMLUG00000015738) #34
Equus	ANCESTRAL SPECIES	22	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00940000163089.b	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT00940000162441.d	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35	ENSGT00950000182960.a.a.a.a.b.rb #36
Donkey	MODERN SPECIES	5	TECPR1 (ENSEASG00005000888) #8	BHLHA15 (ENSEASG00005000829) #9	LMTK2 (ENSEASG00005000819) #10	ENSEASG00005000807 #11	ENSEASG00005000796 #12	ENSEASG00005000768 #13	PMS2 (ENSEASG00005000763) #14	AIMP2 (ENSEASG00005000759) #16	EIF2AK1 (ENSEASG00005000749) #18	ANKRD61 (ENSEASG00005000753) #17	USP42 (ENSEASG00005000742) #19	CYTH3 (ENSEASG00005000673) #20	FAM220A (ENSEASG00005035343)	ENSEASG00005000661	ENSEASG00005000651	RAC1 (ENSEASG00005035702) #22	DAGLB (ENSEASG00005000637) #23	KDELR2 (ENSEASG00005000632) #24	GRID2IP (ENSEASG00005000529) #25	ZDHHC4 (ENSEASG00005000494) #26	INTS15 (ENSEASG00005000468) #27	ZNF853 (ENSEASG00005036604) #28	ZNF316 (ENSEASG00005032381) #29	ENSEASG00005032120	ENSEASG00005000421 #30	ENSEASG00005037577 #31	ENSEASG00005028623 #33	ENSEASG00005000386 #31	ENSEASG00005000366	ENSEASG00005000044 #34	FSCN1 (ENSEASG00005000015) #35
Carnivora	ANCESTRAL SPECIES	12	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000170143	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00960000187139	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b	ENSGT00940000154303.C ##30	ENSGT00510000048032 #34
Felidae	ANCESTRAL SPECIES	19	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000170143	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT00940000154303.C ##30	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35	ENSGT00950000182960.a.a.a.a.b.rb #36
Panthera	ANCESTRAL SPECIES	27	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000170143	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35	ENSGT00950000182960.a.a.a.a.b.rb #36	ENSGT00390000015109 #37
Panthera_a	ANCESTRAL SPECIES	27	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35	ENSGT00950000182960.a.a.a.a.b.rb #36	ENSGT00390000015109 #37
leopard	MODERN SPECIES	91	BRI3 (ENSPPRG00000022966) #7	TECPR1 (ENSPPRG00000000441) #8	BHLHA15 (ENSPPRG00000022063) #9	LMTK2 (ENSPPRG00000001646) #10	ENSPPRG00000001866 #11	ENSPPRG00000003334 #12	ENSPPRG00000004186 #13	PMS2 (ENSPPRG00000005984) #14	ENSPPRG00000006879 #16	ANKRD61 (ENSPPRG00000007144) #17	EIF2AK1 (ENSPPRG00000008945) #18	ENSPPRG00000009316 #19	CYTH3 (ENSPPRG00000010324) #20	FAM220A (ENSPPRG00000010389)	ENSPPRG00000010644	RAC1 (ENSPPRG00000011136) #22	DAGLB (ENSPPRG00000013174) #23	KDELR2 (ENSPPRG00000013747) #24	GRID2IP (ENSPPRG00000023803) #25	ZDHHC4 (ENSPPRG00000022766) #26	INTS15 (ENSPPRG00000000233) #27	ZNF853 (ENSPPRG00000000332) #28	ZNF316 (ENSPPRG00000000894) #29	ZNF12 (ENSPPRG00000001734) #30	ENSPPRG00000001934 #31	RBAK (ENSPPRG00000002149) #33	RNF216 (ENSPPRG00000003482) #34	FSCN1 (ENSPPRG00000003969) #35	ACTB (ENSPPRG00000004533) #36	FBXL18 (ENSPPRG00000004952) #37	TNRC18 (ENSPPRG00000009594)
lion	MODERN SPECIES	16	BHLHA15 (ENSPLOG00000012274) #9	LMTK2 (ENSPLOG00000012296) #10	ENSPLOG00000012444 #11	ENSPLOG00000012512 #12	ENSPLOG00000012710 #13	PMS2 (ENSPLOG00000012941) #14	AIMP2 (ENSPLOG00000013418) #16	EIF2AK1 (ENSPLOG00000013489) #18	ANKRD61 (ENSPLOG00000013627) #17	USP42 (ENSPLOG00000013674) #19	CYTH3 (ENSPLOG00000013721) #20	ENSPLOG00000013780	FAM220A (ENSPLOG00000013819)	ENSPLOG00000013840	ENSPLOG00000013878	RAC1 (ENSPLOG00000013940) #22	DAGLB (ENSPLOG00000014032) #23	KDELR2 (ENSPLOG00000014105) #24	GRID2IP (ENSPLOG00000014225) #25	ZDHHC4 (ENSPLOG00000014884) #26	INTS15 (ENSPLOG00000014931) #27	ZNF853 (ENSPLOG00000015012) #28	ZNF316 (ENSPLOG00000015027) #29	ENSPLOG00000015076	ZNF12 (ENSPLOG00000015122) #30	ENSPLOG00000015268 #31	RBAK (ENSPLOG00000015338) #33	RNF216 (ENSPLOG00000015392) #34	FSCN1 (ENSPLOG00000015460) #35	ACTB (ENSPLOG00000015512) #36	FBXL18 (ENSPLOG00000015550) #37
Tiger	MODERN SPECIES	155	TMEM130 (ENSPTIG00000017143)	NPTX2 (ENSPTIG00000019675)	BAIAP2L1 (ENSPTIG00000020036)	TECPR1 (ENSPTIG00000005029) #8	LMTK2 (ENSPTIG00000008096) #10	ENSPTIG00000009441 #11	ENSPTIG00000010995 #12	ENSPTIG00000013267	ENSPTIG00000014426 #13	PMS2 (ENSPTIG00000015503) #14	AIMP2 (ENSPTIG00000018361) #16	EIF2AK1 (ENSPTIG00000019095) #18	ANKRD61 (ENSPTIG00000021190) #17	ENSPTIG00000021548 #19	FAM220A (ENSPTIG00000007251)	RAC1 (ENSPTIG00000002902) #22	DAGLB (ENSPTIG00000007110) #23	KDELR2 (ENSPTIG00000009649) #24	GRID2IP (ENSPTIG00000010978) #25	ZDHHC4 (ENSPTIG00000017464) #26	INTS15 (ENSPTIG00000017840) #27	ZNF12 (ENSPTIG00000019096) #30	ENSPTIG00000020644 #31	RBAK (ENSPTIG00000020755) #33	RNF216 (ENSPTIG00000021179) #34	ENSPTIG00000021755 #35	ENSPTIG00000021797 ##36	ENSPTIG00000021870 #37	ENSPTIG00000021940	WIPI2 (ENSPTIG00000021994)	ENSPTIG00000000233
Cat	MODERN SPECIES	247	BAIAP2L1 (ENSFCAG00000000317)	BRI3 (ENSFCAG00000045373) #7	TECPR1 (ENSFCAG00000000316) #8	LMTK2 (ENSFCAG00000030546) #10	OCM (ENSFCAG00000000313) #11	ENSFCAG00000031938 #12	ENSFCAG00000018906 #13	PMS2 (ENSFCAG00000008459) #14	AIMP2 (ENSFCAG00000022896) #16	ANKRD61 (ENSFCAG00000027842) #17	EIF2AK1 (ENSFCAG00000008465) #18	USP42 (ENSFCAG00000048499) #19	CYTH3 (ENSFCAG00000024088) #20	FAM220A (ENSFCAG00000053347)	ENSFCAG00000042468	RAC1 (ENSFCAG00000011361) #22	DAGLB (ENSFCAG00000011362) #23	KDELR2 (ENSFCAG00000031430) #24	GRID2IP (ENSFCAG00000007510) #25	ZDHHC4 (ENSFCAG00000023338) #26	INTS15 (ENSFCAG00000008338) #27	ZNF853 (ENSFCAG00000040667) #28	ZNF316 (ENSFCAG00000043529) #29	ENSFCAG00000051237	ZNF12 (ENSFCAG00000008342) #30	ENSFCAG00000001821 #31	RBAK (ENSFCAG00000037840) #33	ENSFCAG00000048020 ##30	RNF216 (ENSFCAG00000013381) #34	FSCN1 (ENSFCAG00000009023) #35	ACTB (ENSFCAG00000006788) #36
Caniformia	ANCESTRAL SPECIES	8	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00960000187139	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b	ENSGT00940000154303.C ##30	ENSGT00510000048032 #34
Caniformia_b	ANCESTRAL SPECIES	7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b	ENSGT00940000154303.C ##30	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35
Ursidae	ANCESTRAL SPECIES	3	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b	ENSGT00950000182890.A.a.b.b	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35
Ursus	ANCESTRAL SPECIES	32	ENSGT01060000248591.a.a.a.a	ENSGT00390000006548.b.k.j.b	ENSGT00940000153560.b.b.a	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00390000014156	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00910000146965	ENSGT00390000011370 #27	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT00950000182890.A.a.b.b	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35	ENSGT00950000182960.a.a.a.b ##36
Polar bear	MODERN SPECIES	212	ENSUMAG00000009130	BAIAP2L1 (ENSUMAG00000009124)	BRI3 (ENSUMAG00000009119) #7	TECPR1 (ENSUMAG00000009072) #8	LMTK2 (ENSUMAG00000009057) #10	ENSUMAG00000009054 #11	ENSUMAG00000009052 #12	ENSUMAG00000009008 #13	PMS2 (ENSUMAG00000008992) #14	AIMP2 (ENSUMAG00000008984) #16	ANKRD61 (ENSUMAG00000008978) #17	EIF2AK1 (ENSUMAG00000008793) #18	ENSUMAG00000008783 #19	ENSUMAG00000008780	ENSUMAG00000008775	RAC1 (ENSUMAG00000008742) #22	DAGLB (ENSUMAG00000008562) #23	KDELR2 (ENSUMAG00000008508) #24	ZDHHC4 (ENSUMAG00000008503) #26	INTS15 (ENSUMAG00000008492) #27	ZNF12 (ENSUMAG00000008484) #30	ENSUMAG00000008479 #31	ENSUMAG00000008474	RBAK (ENSUMAG00000008468) #33	ENSUMAG00000008446	RNF216 (ENSUMAG00000008432) #34	ENSUMAG00000008422 #35	ENSUMAG00000007902 ##36	WIPI2 (ENSUMAG00000007655)	MMD2 (ENSUMAG00000007636)	PAPOLB (ENSUMAG00000007631)
American black bear	MODERN SPECIES	42																RAC1 (ENSUAMG00000023530) #22	DAGLB (ENSUAMG00000023532) #23	KDELR2 (ENSUAMG00000023534) #24	GRID2IP (ENSUAMG00000023537) #25	ZDHHC4 (ENSUAMG00000023548) #26	ENSUAMG00000023551	INTS15 (ENSUAMG00000023552) #27	ENSUAMG00000023557 #29	ENSUAMG00000023558 #29	ENSUAMG00000023559	ENSUAMG00000023581	ZNF12 (ENSUAMG00000023608) #30	ENSUAMG00000023609 #31	RBAK (ENSUAMG00000023610) #33	ENSUAMG00000023611	RNF216 (ENSUAMG00000023613) #34
Giant Panda	MODERN SPECIES	1	BRI3 (ENSAMEG00000025389) #7	TECPR1 (ENSAMEG00000008910) #8	ENSAMEG00000008945 #10	ENSAMEG00000008965 #11	ENSAMEG00000008970 #12	ENSAMEG00000009007 #13	PMS2 (ENSAMEG00000009032) #14	AIMP2 (ENSAMEG00000009065) #16	ANKRD61 (ENSAMEG00000025422) #17	EIF2AK1 (ENSAMEG00000009072) #18	USP42 (ENSAMEG00000006853) #19	CYTH3 (ENSAMEG00000006768) #20	FAM220A (ENSAMEG00000019181)	ENSAMEG00000025057	ENSAMEG00000023754	RAC1 (ENSAMEG00000006764) #22	DAGLB (ENSAMEG00000006734) #23	KDELR2 (ENSAMEG00000006722) #24	GRID2IP (ENSAMEG00000006715) #25	ZDHHC4 (ENSAMEG00000006702) #26	INTS15 (ENSAMEG00000006695) #27	ENSAMEG00000031401 #29	ENSAMEG00000024417	ENSAMEG00000006671 #31	ENSAMEG00000006680 #30	ENSAMEG00000006666 #33	ENSAMEG00000019172	ENSAMEG00000007368 ##30	ENSAMEG00000006634 #34	FSCN1 (ENSAMEG00000006620) #35	FBXL18 (ENSAMEG00000006596) #37
Mustelinae	ANCESTRAL SPECIES	64	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A #31	ENSGT00940000154303.A.b #33	ENSGT01050000244815.B.a.b.b	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35	ENSGT00950000182960.a.a.a.a.b.rb #36	ENSGT00390000015109 #37
Ferret	MODERN SPECIES	366	NPTX2 (ENSMPUG00000016559)	ENSMPUG00000016560	BAIAP2L1 (ENSMPUG00000016561)	BRI3 (ENSMPUG00000016562) #7	TECPR1 (ENSMPUG00000016564) #8	BHLHA15 (ENSMPUG00000020102) #9	LMTK2 (ENSMPUG00000016567) #10	ENSMPUG00000016568 #11	ENSMPUG00000016569 #12	ENSMPUG00000016571 #13	PMS2 (ENSMPUG00000016574) #14	AIMP2 (ENSMPUG00000016575) #16	EIF2AK1 (ENSMPUG00000016576) #18	USP42 (ENSMPUG00000016577) #19	CYTH3 (ENSMPUG00000016578) #20	RAC1 (ENSMPUG00000016579) #22	DAGLB (ENSMPUG00000016581) #23	KDELR2 (ENSMPUG00000016583) #24	GRID2IP (ENSMPUG00000016585) #25	ZDHHC4 (ENSMPUG00000016586) #26	INTS15 (ENSMPUG00000016589) #27	ENSMPUG00000016591	ZNF316 (ENSMPUG00000016592) #29	ENSMPUG00000016594	ZNF12 (ENSMPUG00000016596) #30	ENSMPUG00000016601 #31	RBAK (ENSMPUG00000016607) #33	ENSMPUG00000020103	ENSMPUG00000016608	RNF216 (ENSMPUG00000016610) #34	FSCN1 (ENSMPUG00000016611) #35
American mink	MODERN SPECIES	113	TECPR1 (ENSNVIG00000006455) #8	BHLHA15 (ENSNVIG00000006444) #9	LMTK2 (ENSNVIG00000006430) #10	ENSNVIG00000006417 #11	ENSNVIG00000006396 #12	ENSNVIG00000006329 #13	PMS2 (ENSNVIG00000006302) #14	AIMP2 (ENSNVIG00000006284) #16	ANKRD61 (ENSNVIG00000006278) #17	EIF2AK1 (ENSNVIG00000006253) #18	ENSNVIG00000006235	USP42 (ENSNVIG00000006223) #19	CYTH3 (ENSNVIG00000006203) #20	ENSNVIG00000006191	ENSNVIG00000006188	RAC1 (ENSNVIG00000006036) #22	DAGLB (ENSNVIG00000005999) #23	KDELR2 (ENSNVIG00000005984) #24	GRID2IP (ENSNVIG00000005909) #25	ZDHC4 (ENSNVIG00000005822) #26	INTS15 (ENSNVIG00000005787) #27	ZNF316 (ENSNVIG00000005744) #29	ENSNVIG00000005736	ZNF12 (ENSNVIG00000005705) #30	RBAK (ENSNVIG00000005690) #33	ENSNVIG00000005682	RNF216 (ENSNVIG00000005665) #34	FSCN1 (ENSNVIG00000005656) #35	ACTB (ENSNVIG00000005620) #36	FBXL18 (ENSNVIG00000005606) #37	TNRC18 (ENSNVIG00000005507)
Canidae	ANCESTRAL SPECIES	3	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00960000187139	ENSGT00390000014547.c	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A.z #31	ENSGT00940000154173.A.y #31	ENSGT00940000154303.A.b #33	ENSGT00950000182890.A.a.b.b	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35
Canis_lupus	ANCESTRAL SPECIES	2	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000165394	ENSGT00940000154303.B #30	ENSGT00940000154173.A.y.a #31	ENSGT00940000154173.A.y.b #31	ENSGT00940000154303.A.b #33	ENSGT00990000207633	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35
Dog	DUPLICATION
Dog	MODERN SPECIES	32	GGPS1 (ENSCAFG00845003438)	ARID4B (ENSCAFG00845003468)	RBM34 (ENSCAFG00845003503)	TOMM20 (ENSCAFG00845003534)	IRF2BP2 (ENSCAFG00845003554)	TARBP1 (ENSCAFG00845003609)	ENSCAFG00845003725	SLC35F3 (ENSCAFG00845003804)	ENSCAFG00845003844	MAP3K21 (ENSCAFG00845003868)	PCNX2 (ENSCAFG00845003909)	ENSCAFG00845004013	MAP10 (ENSCAFG00845000217)	SIPA1L2 (ENSCAFG00845000316)	DISC1 (ENSCAFG00845000475)	ENSCAFG00845000495 #22	TSNAX (ENSCAFG00845000505)	EGLN1 (ENSCAFG00845000514)	SPRTN (ENSCAFG00845000572)	EXOC8 (ENSCAFG00845000604)	GNPAT (ENSCAFG00845000642)	C4H1orf131 (ENSCAFG00845000693)	TRIM67 (ENSCAFG00845000716)	FAM89A (ENSCAFG00845000764)	ARV1 (ENSCAFG00845000779)	TTC13 (ENSCAFG00845000829)	ENSCAFG00845000866	CAPN9 (ENSCAFG00845000946)	AGT (ENSCAFG00845001060)	COG2 (ENSCAFG00845001085)	PGBD5 (ENSCAFG00845001146)
Dog	MODERN SPECIES	34	BRI3 (ENSCAFG00845009124) #7	TECPR1 (ENSCAFG00845009230) #8	LMTK2 (ENSCAFG00845009531) #10	ENSCAFG00845009599	OCM2 (ENSCAFG00845009625) #11	ENSCAFG00845009703 #12	ENSCAFG00845009924 #13	PMS2 (ENSCAFG00845010093) #14	AIMP2 (ENSCAFG00845010261) #16	EIF2AK1 (ENSCAFG00845010328) #18	ANKRD61 (ENSCAFG00845010423) #17	USP42 (ENSCAFG00845010465) #19	CYTH3 (ENSCAFG00845010607) #20	FAM220A (ENSCAFG00845010882)	ENSCAFG00845010907	RAC1 (ENSCAFG00845010961) #22	DAGLB (ENSCAFG00845011183) #23	KDELR2 (ENSCAFG00845011781) #24	GRID2IP (ENSCAFG00845012466) #25	ZDHHC4 (ENSCAFG00845012594) #26	C6H7orf26 (ENSCAFG00845012647) #27	ZNF853 (ENSCAFG00845012765) #28	ZNF316 (ENSCAFG00845012808) #29	ENSCAFG00845012837	ENSCAFG00845012858 #33	ZNF12 (ENSCAFG00845012896) #30	ENSCAFG00845012927 #31	ENSCAFG00845012969 #31	ENSCAFG00845013016 #31	ENSCAFG00845013049 #31	ENSCAFG00845013157
Red fox	MODERN SPECIES	218	TECPR1 (ENSVVUG00000015112) #8	BHLHA15 (ENSVVUG00000015125) #9	LMTK2 (ENSVVUG00000015127) #10	OCM2 (ENSVVUG00000015131) #11	CCZ1 (ENSVVUG00000015134) #12	ENSVVUG00000015144 #13	PMS2 (ENSVVUG00000015191) #14	AIMP2 (ENSVVUG00000015196) #16	EIF2AK1 (ENSVVUG00000015198) #18	ANKRD61 (ENSVVUG00000015203) #17	USP42 (ENSVVUG00000015208) #19	CYTH3 (ENSVVUG00000015297) #20	FAM220A (ENSVVUG00000015524)	ENSVVUG00000015527	ENSVVUG00000015529	RAC1 (ENSVVUG00000015534) #22	DAGLB (ENSVVUG00000015550) #23	KDELR2 (ENSVVUG00000015560) #24	GRID2IP (ENSVVUG00000015575) #25	ZDHHC4 (ENSVVUG00000015647) #26	INTS15 (ENSVVUG00000015652) #27	ZNF853 (ENSVVUG00000015656) #28	ENSVVUG00000015662 #29	ENSVVUG00000015678 #29	ENSVVUG00000015680	ZNF12 (ENSVVUG00000015684) #30	ENSVVUG00000015697 #31
Eulipotyphla	ANCESTRAL SPECIES	1992																ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23
Common shrew	MODERN SPECIES	11847																RAC1 (ENSSARG00000014557) #22
Hedgehog	MODERN SPECIES	3343																RAC1 (ENSEEUG00000012554) #22	DAGLB (ENSEEUG00000012624) #23
Atlantogenata	ANCESTRAL SPECIES	21	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00950000184989	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000162728 #29	ENSGT00940000154303.A #33	ENSGT01050000244815.B.a.b.b	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35	ENSGT00950000182960.a.a.a.b ##36	ENSGT00940000160116	ENSGT00940000159369	ENSGT00520000061927	ENSGT00950000182960.a.a.a.a.b.rb #36
Xenarthra	ANCESTRAL SPECIES	97	ENSGT00390000017961	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a	ENSGT00940000153560.b.b.a	ENSGT00510000047886.a #8	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000162728 #29
Armadillo	DUPLICATION
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	1664	ENSDNOG00000032700	ENSDNOG00000040578	NPTX2 (ENSDNOG00000012420)	BAIAP2L1 (ENSDNOG00000039104)	TECPR1 (ENSDNOG00000048784) #8	LMTK2 (ENSDNOG00000036745) #10	ENSDNOG00000007139 #11	ENSDNOG00000024536 #12	ENSDNOG00000042571 #13	PMS2 (ENSDNOG00000042543) #14	AIMP2 (ENSDNOG00000043945) #16	ANKRD61 (ENSDNOG00000016956) #17	EIF2AK1 (ENSDNOG00000016950) #18	USP42 (ENSDNOG00000031362) #19	CYTH3 (ENSDNOG00000019655) #20	ENSDNOG00000015574 #22	DAGLB (ENSDNOG00000017587) #23	KDELR2 (ENSDNOG00000047978) #24	GRID2IP (ENSDNOG00000048258) #25	ZDHHC4 (ENSDNOG00000009165) #26	INTS15 (ENSDNOG00000043984) #27	ZNF316 (ENSDNOG00000041372) #29
Armadillo	MODERN SPECIES	3907																ENSDNOG00000042733 #22
Armadillo	MODERN SPECIES	2552								HECW2 (ENSDNOG00000011278)	CCDC150 (ENSDNOG00000017806)	GTF3C3 (ENSDNOG00000017811)	C2orf66 (ENSDNOG00000017813)	PGAP1 (ENSDNOG00000018348)	ENSDNOG00000030871	ENSDNOG00000037436	ANKRD44 (ENSDNOG00000034608)	ENSDNOG00000037521 #22	SF3B1 (ENSDNOG00000011754)	COQ10B (ENSDNOG00000031357)	ENSDNOG00000013226	ENSDNOG00000008252	ENSDNOG00000041539	RFTN2 (ENSDNOG00000001933)	MARS2 (ENSDNOG00000041522)	BOLL (ENSDNOG00000017076)	ENSDNOG00000035028	ENSDNOG00000000115	PLCL1 (ENSDNOG00000030916)
Afrotheria	ANCESTRAL SPECIES	18	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00950000184989	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000162728 #29	ENSGT00940000154303.A #33	ENSGT01050000244815.B.a.b.b	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35	ENSGT00950000182960.a.a.a.b ##36	ENSGT00940000160116	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015109 #37
Tenrec	MODERN SPECIES	3218																RAC1 (ENSETEG00000001830) #22
Afrotheria_a	ANCESTRAL SPECIES	65	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #11	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00950000184989	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000162728 #29	ENSGT00940000154303.A #33	ENSGT01050000244815.B.a.b.b	ENSGT00510000048032 #34	ENSGT00950000183157.a.a.b #35	ENSGT00390000015109 #37	ENSGT00940000157099	ENSGT00950000182898.a.b	ENSGT00940000155537	ENSGT00940000157972
Hyrax	MODERN SPECIES	2624																RAC1 (ENSPCAG00000000530) #22	DAGLB (ENSPCAG00000000553) #23
Elephant	MODERN SPECIES	403	BRI3 (ENSLAFG00000031280) #7	TECPR1 (ENSLAFG00000021861) #8	BHLHA15 (ENSLAFG00000000139) #9	LMTK2 (ENSLAFG00000000137) #10	ENSLAFG00000027808 #11	ENSLAFG00000026343 #12	ENSLAFG00000011948 #13	PMS2 (ENSLAFG00000018588) #14	AIMP2 (ENSLAFG00000018590) #16	ANKRD61 (ENSLAFG00000012703) #17	EIF2AK1 (ENSLAFG00000012693) #18	USP42 (ENSLAFG00000013305) #19	ENSLAFG00000028040	CYTH3 (ENSLAFG00000010832) #20	ENSLAFG00000003150	RAC1 (ENSLAFG00000012844) #22	ENSLAFG00000004986 #23	KDELR2 (ENSLAFG00000004992) #24	GRID2IP (ENSLAFG00000020636) #25	ZDHHC4 (ENSLAFG00000010790) #26	INTS15 (ENSLAFG00000010793) #27	ZNF316 (ENSLAFG00000016201) #29	RBAK (ENSLAFG00000008833) #33	ENSLAFG00000030133	RNF216 (ENSLAFG00000017088) #34	FSCN1 (ENSLAFG00000031431) #35	ENSLAFG00000001268 ##36	FBXL18 (ENSLAFG00000001983) #37	ENSLAFG00000004819	SLC29A4 (ENSLAFG00000014371)	WIPI2 (ENSLAFG00000001086)
Marsupialia	ANCESTRAL SPECIES	6	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000165760	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000013648	ENSGT00390000014131	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915	ENSGT00940000164007
Marsupialia_b	ANCESTRAL SPECIES	18	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000165760	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000013648	ENSGT00390000014131	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915	ENSGT00940000164007
Diprotodontia	ANCESTRAL SPECIES	14	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000165760	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000013648	ENSGT00390000014131	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915	ENSGT00940000164007	ENSGT00940000155289.C.a.a.a.b
Diprotodontia_a	ANCESTRAL SPECIES	13	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000165760	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000013648	ENSGT00390000014131	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915	ENSGT00940000164007	ENSGT00940000155289.C.a.a.a.b
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1043	ENSVURG00010019640 #8	ENSVURG00010019668 #9	ENSVURG00010019676 #10	ENSVURG00010019693	ENSVURG00010019699	ENSVURG00010019709 #12	ENSVURG00010019734 #13	ENSVURG00010019748	ENSVURG00010019752 #14	ENSVURG00010019767 #16	ENSVURG00010019776 #18	ENSVURG00010019789 #17	ENSVURG00010019798 #19	ENSVURG00010019813 #20	ENSVURG00010019838	ENSVURG00010019849 #22	ENSVURG00010019859 #23	ENSVURG00010019872 #24	ENSVURG00010019881	ENSVURG00010019899	ENSVURG00010019912	ENSVURG00010019918	ENSVURG00010019925	ENSVURG00010019953	ENSVURG00010020040	ENSVURG00010020048	ENSVURG00010020052	ENSVURG00010020059	ENSVURG00010020130	ENSVURG00010020475	ENSVURG00010020485
Common wonbat	MODERN SPECIES	1043	ENSVURG00010017613 #10	ENSVURG00010017628	ENSVURG00010017631 #11	ENSVURG00010017641 #12	ENSVURG00010017659 #13	ENSVURG00010017664	ENSVURG00010017670 #14	ENSVURG00010017682 #16	ENSVURG00010017687 #18	ENSVURG00010017699 #17	ENSVURG00010017704 #19	ENSVURG00010017709 #19	ENSVURG00010017715 #20	ENSVURG00010017722	ENSVURG00010017723	ENSVURG00010017726 #22	ENSVURG00010017736 #23	ENSVURG00010017744 #24	ENSVURG00010017749	ENSVURG00010017757	ENSVURG00010017762	ENSVURG00010017764	ENSVURG00010017767	ENSVURG00010017774	ENSVURG00010017786	ENSVURG00010017796	ENSVURG00010017800	ENSVURG00010017811	ENSVURG00010017868	ENSVURG00010018054	ENSVURG00010018063
koala	MODERN SPECIES	159	TECPR1 (ENSPCIG00000030290) #8	BHLHA15 (ENSPCIG00000030288) #9	LMTK2 (ENSPCIG00000030286) #10	ENSPCIG00000030285	ENSPCIG00000030283	ENSPCIG00000030282 #12	ENSPCIG00000030281 #13	PMS2 (ENSPCIG00000030280) #14	AIMP2 (ENSPCIG00000030279) #16	EIF2AK1 (ENSPCIG00000030277) #18	ANKRD61 (ENSPCIG00000030278) #17	USP42 (ENSPCIG00000030275) #19	CYTH3 (ENSPCIG00000030271) #20	ENSPCIG00000030274	ENSPCIG00000030272	RAC1 (ENSPCIG00000030270) #22	DAGLB (ENSPCIG00000030269) #23	KDELR2 (ENSPCIG00000030268) #24	OTOA (ENSPCIG00000030267)	METTL9 (ENSPCIG00000030262)	IGSF6 (ENSPCIG00000030264)	ENSPCIG00000030261	CDR2 (ENSPCIG00000032986)	POLR3E (ENSPCIG00000019767)	EEF2K (ENSPCIG00000019761)	ENSPCIG00000011458	MOSMO (ENSPCIG00000033838)	PDZD9 (ENSPCIG00000008907)	UQCRC2 (ENSPCIG00000008904)	ENSPCIG00000019992	ENSPCIG00000029226
Tasmanian devil	MODERN SPECIES		ENSSHAG00000027321 #7	TECPR1 (ENSSHAG00000015638) #8	BHLHA15 (ENSSHAG00000031719) #9	ENSSHAG00000024069 #10	ENSSHAG00000014808	ENSSHAG00000014562	ENSSHAG00000014374 #12	ENSSHAG00000014136 #13	PMS2 (ENSSHAG00000013933) #14	AIMP2 (ENSSHAG00000013868) #16	EIF2AK1 (ENSSHAG00000013711) #18	ANKRD61 (ENSSHAG00000013772) #17	USP42 (ENSSHAG00000013089) #19	CYTH3 (ENSSHAG00000023428) #20	ENSSHAG00000012025	RAC1 (ENSSHAG00000011057) #22	DAGLB (ENSSHAG00000010735) #23	ENSSHAG00000004883 #24	ENSSHAG00000009790	ENSSHAG00000009259	ENSSHAG00000023855	ENSSHAG00000008395	ENSSHAG00000024843	POLR3E (ENSSHAG00000007956)	EEF2K (ENSSHAG00000007171)	SDR42E2 (ENSSHAG00000006330)	VWA3A (ENSSHAG00000005420)	MOSMO (ENSSHAG00000029575)	PDZD9 (ENSSHAG00000002387)	ENSSHAG00000001179	ENSSHAG00000027183
Opossum	MODERN SPECIES	5	BRI3 (ENSMODG00000041144) #7	TECPR1 (ENSMODG00000008338) #8	BHLHA15 (ENSMODG00000025044) #9	LMTK2 (ENSMODG00000008276) #10	ENSMODG00000008249	ENSMODG00000008239	ENSMODG00000008225 #12	ENSMODG00000008200 #13	PMS2 (ENSMODG00000008178) #14	AIMP2 (ENSMODG00000008128) #16	ANKRD61 (ENSMODG00000008105) #17	EIF2AK1 (ENSMODG00000008099) #18	USP42 (ENSMODG00000008055) #19	CYTH3 (ENSMODG00000008046) #20	ENSMODG00000025051	RAC1 (ENSMODG00000007914) #22	ENSMODG00000007919	DAGLB (ENSMODG00000007878) #23	KDELR2 (ENSMODG00000007832) #24	OTOA (ENSMODG00000007815)	IGSF6 (ENSMODG00000007789)	METTL9 (ENSMODG00000007774)	ENSMODG00000007766	CDR2 (ENSMODG00000007761)	POLR3E (ENSMODG00000007752)	EEF2K (ENSMODG00000007732)	ENSMODG00000007697	ENSMODG00000007681	MOSMO (ENSMODG00000049861)	ENSMODG00000044007	ENSMODG00000007652
Platypus	MODERN SPECIES	11	BAIAP2L1 (ENSOANG00000001935)	BRI3 (ENSOANG00000047574) #7	TECPR1 (ENSOANG00000001936) #8	BHLHA15 (ENSOANG00000001937) #9	LMTK2 (ENSOANG00000001939) #10	ENSOANG00000001942	ENSOANG00000000763	ENSOANG00000000762 #12	PMS2 (ENSOANG00000001944) #14	AIMP2 (ENSOANG00000043994) #16	EIF2AK1 (ENSOANG00000002795) #18	USP42 (ENSOANG00000003278) #19	CYTH3 (ENSOANG00000003277) #20	ENSOANG00000003276	ENSOANG00000048802	RAC1 (ENSOANG00000045665) #22	DAGLB (ENSOANG00000003274) #23	KDELR2 (ENSOANG00000003273) #24	OTOA (ENSOANG00000003269)	METTL9 (ENSOANG00000003267)	IGSF6 (ENSOANG00000003268)	ENSOANG00000047388	CDR2 (ENSOANG00000037184)	POLR3E (ENSOANG00000003264)	EEF2K (ENSOANG00000003263)	SDR42E2 (ENSOANG00000005373)	VWA3A (ENSOANG00000003262)	MOSMO (ENSOANG00000003261)	PDZD9 (ENSOANG00000003260)	UQCRC2 (ENSOANG00000003259)	CRYM (ENSOANG00000049114)
Sauria	ANCESTRAL SPECIES	12	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00950000184989	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT01070000254102	ENSGT00390000014547	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT01030000238211	ENSGT00940000157839	ENSGT00940000160393	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915
Lepidosauria	ANCESTRAL SPECIES	22	ENSGT00940000165760	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00950000184989	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000013648	ENSGT00390000014131	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT01030000238211	ENSGT00940000157839	ENSGT00940000160393	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915
Episquamata	ANCESTRAL SPECIES	8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT01030000238211	ENSGT00940000157839	ENSGT00940000160393	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915
Laterata	ANCESTRAL SPECIES	22	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825.i #20	ENSGT00390000014156	ENSGT00390000014547	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915	ENSGT00390000000237	ENSGT00390000017548.a
Common wall lizard	MODERN SPECIES	5	ENSPMRG00000022716	ENSPMRG00000022718	ENSPMRG00000022724 #12	ENSPMRG00000022729	ENSPMRG00000022733 #13	PMS2 (ENSPMRG00000022739) #14	AIMP2 (ENSPMRG00000022742) #16	EIF2AK1 (ENSPMRG00000022745) #18	ANKRD61 (ENSPMRG00000022754) #17	USP42 (ENSPMRG00000022758) #19	ENSPMRG00000022766 #20	ENSPMRG00000022771 #20	ENSPMRG00000022774	FAM220A (ENSPMRG00000022775)	ENSPMRG00000022780	RAC1 (ENSPMRG00000022784) #22	DAGLB (ENSPMRG00000022790) #23	KDELR2 (ENSPMRG00000022802) #24	OTOA (ENSPMRG00000022809)	METTL9 (ENSPMRG00000022816)	IGSF6 (ENSPMRG00000022817)	ENSPMRG00000022821	CDR2 (ENSPMRG00000022824)	POLR3E (ENSPMRG00000022828)	EEF2K (ENSPMRG00000022835)	ENSPMRG00000022841	ENSPMRG00000022852	USP22 (ENSPMRG00000022858)	DHRS7B (ENSPMRG00000022868)	TMEM11 (ENSPMRG00000022875)	ENSPMRG00000022878
Argentine black and white tegu	MODERN SPECIES	102	TECPR1 (ENSSMRG00000020078) #8	BHLHA15 (ENSSMRG00000020077) #9	LMTK2 (ENSSMRG00000020076) #10	ENSSMRG00000020075	ENSSMRG00000020074	ENSSMRG00000020073 #12	ENSSMRG00000020069 #13	PMS2 (ENSSMRG00000020068) #14	AIMP2 (ENSSMRG00000020067) #16	ANKRD61 (ENSSMRG00000020066) #17	EIF2AK1 (ENSSMRG00000020065) #18	USP42 (ENSSMRG00000020064) #19	CYTH3 (ENSSMRG00000020063) #20	ENSSMRG00000020060	ENSSMRG00000020059	RAC1 (ENSSMRG00000020058) #22	DAGLB (ENSSMRG00000020057) #23	KDELR2 (ENSSMRG00000020056) #24	OTOA (ENSSMRG00000020055)	ENSSMRG00000020054	ENSSMRG00000020053	METTL9 (ENSSMRG00000020052)	ENSSMRG00000020051	CDR2 (ENSSMRG00000020050)	POLR3E (ENSSMRG00000020049)	EEF2K (ENSSMRG00000020048)	ENSSMRG00000020044	MOSMO (ENSSMRG00000020043)	PDZD9 (ENSSMRG00000020041)	UQCRC2 (ENSSMRG00000020040)	CRYM (ENSSMRG00000020039)
Toxicofera	ANCESTRAL SPECIES	14	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547	ENSGT00960000187139	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT01030000238211	ENSGT00940000157839	ENSGT00940000160393	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915
Elapidae	ANCESTRAL SPECIES	1	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381.m #14	ENSGT00390000015826.m.b #16	ENSGT00390000015826.n #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00980000198850	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT01030000238211	ENSGT00940000157839	ENSGT00940000160393	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915	ENSGT00390000000237
Elapidae_a	ANCESTRAL SPECIES	3	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381.m #14	ENSGT00390000015826.m.a #16	ENSGT00390000015826.n #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00980000198850	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT01030000238211	ENSGT00940000157839
Acanthophiinae	ANCESTRAL SPECIES	2	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381.m #14	ENSGT00390000015826.m.a #16	ENSGT00390000015826.m.b #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00980000198850	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT01030000238211	ENSGT00940000157839	ENSGT00940000160393	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915	ENSGT00390000000237.g	ENSGT00390000017548.a
Eastern brown snake	MODERN SPECIES	24	PDGFA (ENSPTXG00000006612)	FAM20C (ENSPTXG00000006610)	TRRAP (ENSPTXG00000001456)	BAIAP2L1 (ENSPTXG00000001205)	BRI3 (ENSPTXG00000001180) #7	BHLHA15 (ENSPTXG00000001176) #9	ENSPTXG00000001173	ENSPTXG00000001168	ENSPTXG00000001123	ENSPTXG00000001115 #12	ENSPTXG00000001109 #13	ENSPTXG00000001104 #14	CYTH3 (ENSPTXG00000001066) #20	ENSPTXG00000001047	ENSPTXG00000001045	RAC1 (ENSPTXG00000001040) #22	DAGLB (ENSPTXG00000000995) #23	METTL9 (ENSPTXG00000000992)	ENSPTXG00000000989	EEF2K (ENSPTXG00000000987)	SDR42E2 (ENSPTXG00000000984)	MOSMO (ENSPTXG00000000981)	PDZD9 (ENSPTXG00000000978)	LDAF1 (ENSPTXG00000000974)	ENSPTXG00000000971	ENSPTXG00000000967	ENSPTXG00000000962	ENSPTXG00000000957	LYRM1 (ENSPTXG00000000953)	DCUN1D3 (ENSPTXG00000000950)	ENSPTXG00000000947
Mainland tiger snake	MODERN SPECIES	2842																ENSNSUG00000000237 #22
Blue-lipped sea krait	MODERN SPECIES	4638									ADAP1 (ENSLLTG00000007300)	GET4 (ENSLLTG00000007330)	SUN1 (ENSLLTG00000007375)	DNAAF5 (ENSLLTG00000007564)	ENSLLTG00000007633	ENSLLTG00000007659	ENSLLTG00000007687	RAC1 (ENSLLTG00000007714) #22	DAGLB (ENSLLTG00000007768) #23	KDELR2 (ENSLLTG00000007861) #24
Indian cobra	MODERN SPECIES	15	BRI3 (ENSNNAG00000015632) #7	TECPR1 (ENSNNAG00000015591) #8	BHLHA15 (ENSNNAG00000015579) #9	LMTK2 (ENSNNAG00000015557) #10	ENSNNAG00000015537	ENSNNAG00000015521	ENSNNAG00000015499 #12	ENSNNAG00000015464 #13	PMS2 (ENSNNAG00000015295) #14	AIMP2 (ENSNNAG00000015266) #16	ANKRD61 (ENSNNAG00000015256) #17	EIF2AK1 (ENSNNAG00000015234) #18	USP42 (ENSNNAG00000015212) #19	ENSNNAG00000015187	ENSNNAG00000015145	RAC1 (ENSNNAG00000015130) #22	DAGLB (ENSNNAG00000015089) #23	KDELR2 (ENSNNAG00000015076) #24	OTOA (ENSNNAG00000015019)	METTL9 (ENSNNAG00000014998)	ENSNNAG00000014986	CDR2 (ENSNNAG00000014969)	POLR3E (ENSNNAG00000014897)	EEF2K (ENSNNAG00000014796)	MOSMO (ENSNNAG00000014761)	PDZD9 (ENSNNAG00000014738)	UQCRC2 (ENSNNAG00000014686)	CRYM (ENSNNAG00000014657)	ANKS4B (ENSNNAG00000014642)	MCHR1 (ENSNNAG00000014634)	ENSNNAG00000014606
Lizard	MODERN SPECIES	1119	ENSACAG00000012378 #9	ENSACAG00000043857	ENSACAG00000012269	ENSACAG00000012302 #10	ENSACAG00000012176 #12	ENSACAG00000005321 #13	PMS2 (ENSACAG00000013264) #14	AIMP2 (ENSACAG00000036942) #16	ENSACAG00000038983 #17	EIF2AK1 (ENSACAG00000013139) #18	USP42 (ENSACAG00000013073) #19	CYTH3 (ENSACAG00000012975) #20	ENSACAG00000040884	ENSACAG00000037064	ENSACAG00000041481	RAC1 (ENSACAG00000012949) #22	ENSACAG00000024409	KDELR2 (ENSACAG00000012844) #24	ENSACAG00000035347	OTOA (ENSACAG00000012735)	IGSF6 (ENSACAG00000029053)	METTL9 (ENSACAG00000012704)
tuatara	MODERN SPECIES	971				ENSSPUG00000003750	ENSSPUG00000003766 #12	ENSSPUG00000003798 #13	PMS2 (ENSSPUG00000003912) #14	AIMP2 (ENSSPUG00000003939) #16	EIF2AK1 (ENSSPUG00000003956) #18	ENSSPUG00000003980 #19	ENSSPUG00000003987 #19	ENSSPUG00000003995	CYTH3 (ENSSPUG00000004006) #20	FAM220A (ENSSPUG00000004033)	ENSSPUG00000004040	RAC1 (ENSSPUG00000004044) #22	DAGLB (ENSSPUG00000004057) #23	KDELR2 (ENSSPUG00000004082) #24	OTOA (ENSSPUG00000004106)	METTL9 (ENSSPUG00000004162)	IGSF6 (ENSSPUG00000004176)	ENSSPUG00000004188	CDR2 (ENSSPUG00000004210)	POLR3E (ENSSPUG00000004227)	EEF2K (ENSSPUG00000004263)	VWA3A (ENSSPUG00000004344)	MOSMO (ENSSPUG00000004516)	UQCRC2 (ENSSPUG00000004521)	CRYM (ENSSPUG00000004556)	ANKS4B (ENSSPUG00000004626)	ZP2 (ENSSPUG00000004665)
Archelosauria	ANCESTRAL SPECIES	12	ENSGT00940000165760	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00950000184989	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT01070000254102	ENSGT00390000014547	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT01030000238211	ENSGT00940000157839	ENSGT00940000160393.a	ENSGT00940000160393.b	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326
Cryptodira	ANCESTRAL SPECIES	12	ENSGT00940000158475 #10	ENSGT00940000165760	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547	ENSGT01070000254102	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT01030000238211	ENSGT00940000157839	ENSGT00940000160393.a	ENSGT00940000160393.b	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326
Testudinoidea	ANCESTRAL SPECIES	6	ENSGT00940000158475 #10	ENSGT00940000165760	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547	ENSGT01070000254102	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT01030000238211	ENSGT00940000157839	ENSGT00940000160393.a	ENSGT00940000160393.b	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326
Emydidae	ANCESTRAL SPECIES	12	ENSGT00940000158475 #10	ENSGT00940000165760	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT01070000254102	ENSGT00390000014547	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393.a	ENSGT00940000160393.b	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915
Three-toed box turtle	MODERN SPECIES	37	LMTK2 (ENSTMTG00000017283) #10	ENSTMTG00000017314	ENSTMTG00000017329	ENSTMTG00000017346 #12	ENSTMTG00000017382 #13	ENSTMTG00000017429 #14	ENSTMTG00000017435 #14	AIMP2 (ENSTMTG00000017441) #16	EIF2AK1 (ENSTMTG00000017453) #18	ANKRD61 (ENSTMTG00000017473) #17	USP42 (ENSTMTG00000017492) #19	CYTH3 (ENSTMTG00000017525) #20	FAM220A (ENSTMTG00000017673)	ENSTMTG00000017683	ENSTMTG00000017688	RAC1 (ENSTMTG00000017694) #22	DAGLB (ENSTMTG00000017708) #23	KDELR2 (ENSTMTG00000014123) #24	OTOA (ENSTMTG00000014132)	METTL9 (ENSTMTG00000014157)	IGSF6 (ENSTMTG00000014170)	CDR2 (ENSTMTG00000014184)	POLR3E (ENSTMTG00000014202)	EEF2K (ENSTMTG00000014245)	SDR42E2 (ENSTMTG00000014281)	VWA3A (ENSTMTG00000014320)	MOSMO (ENSTMTG00000014399)	PDZD9 (ENSTMTG00000014416)	UQCRC2 (ENSTMTG00000014432)	CRYM (ENSTMTG00000014453)	ANKS4B (ENSTMTG00000014467)
painted turtle	MODERN SPECIES	2421	BRI3 (ENSCPBG00000020004) #7	TECPR1 (ENSCPBG00000020001) #8	BHLHA15 (ENSCPBG00000019998) #9	LMTK2 (ENSCPBG00000019995) #10	ENSCPBG00000019992	ENSCPBG00000019990	ENSCPBG00000019986 #12	ENSCPBG00000019972 #13	AIMP2 (ENSCPBG00000019964) #16	ANKRD61 (ENSCPBG00000019961) #17	EIF2AK1 (ENSCPBG00000019958) #18	USP42 (ENSCPBG00000019954) #19	CYTH3 (ENSCPBG00000019371) #20	ENSCPBG00000019331	ENSCPBG00000019334	RAC1 (ENSCPBG00000019327) #22	DAGLB (ENSCPBG00000019318) #23	KDELR2 (ENSCPBG00000019315) #24	OTOA (ENSCPBG00000019304)	IGSF6 (ENSCPBG00000019298)	METTL9 (ENSCPBG00000019295)	ENSCPBG00000019293	CDR2 (ENSCPBG00000019290)	POLR3E (ENSCPBG00000019284)	EEF2K (ENSCPBG00000019280)	ENSCPBG00000019278	ENSCPBG00000019277	VWA3A (ENSCPBG00000019273)	MOSMO (ENSCPBG00000019269)	PDZD9 (ENSCPBG00000019268)	UQCRC2 (ENSCPBG00000019263)
Testudinidae	ANCESTRAL SPECIES	13	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000165760	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014156	ENSGT00390000014547	ENSGT01070000254102	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT01030000238211	ENSGT00940000157839	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915	ENSGT00390000000237
Goode s thornscrub tortoise	MODERN SPECIES	1	TECPR1 (ENSGEVG00005007358) #8	LMTK2 (ENSGEVG00005007310) #10	ENSGEVG00005007284	ENSGEVG00005007262	ENSGEVG00005007222 #12	ENSGEVG00005006943 #13	PMS2 (ENSGEVG00005006849) #14	AIMP2 (ENSGEVG00005006828) #16	ANKRD61 (ENSGEVG00005006803) #17	EIF2AK1 (ENSGEVG00005006770) #18	USP42 (ENSGEVG00005006731) #19	CYTH3 (ENSGEVG00005006632) #20	ENSGEVG00005006610	ENSGEVG00005006589	ENSGEVG00005006554	RAC1 (ENSGEVG00005006535) #22	DAGLB (ENSGEVG00005006511) #23	KDELR2 (ENSGEVG00005006489) #24	OTOA (ENSGEVG00005006398)	IGSF6 (ENSGEVG00005006360)	METTL9 (ENSGEVG00005006338)	ENSGEVG00005006323	CDR2 (ENSGEVG00005006256)	POLR3E (ENSGEVG00005006203)	ENSGEVG00005006170	EEF2K (ENSGEVG00005006130)	VWA3A (ENSGEVG00005006036)	MOSMO (ENSGEVG00005006006)	PDZD9 (ENSGEVG00005005979)	UQCRC2 (ENSGEVG00005005957)	ENSGEVG00005005931
Abingdon island giant tortoise	MODERN SPECIES	2204											ENSCABG00000022878 #19	CYTH3 (ENSCABG00000022881) #20	FAM220A (ENSCABG00000022884)	ENSCABG00000022885	ENSCABG00000022886	RAC1 (ENSCABG00000022887) #22	DAGLB (ENSCABG00000022889) #23	KDELR2 (ENSCABG00000022895) #24	OTOA (ENSCABG00000022896)	METTL9 (ENSCABG00000000240)	ENSCABG00000000282	CDR2 (ENSCABG00000000306)	POLR3E (ENSCABG00000000417)	ENSCABG00000001245	EEF2K (ENSCABG00000001247)	VWA3A (ENSCABG00000001255)	MOSMO (ENSCABG00000001267)	PDZD9 (ENSCABG00000001272)	UQCRC2 (ENSCABG00000001280)	CRYM (ENSCABG00000001287)	ANKS4B (ENSCABG00000001292)
Chinese turtle	MODERN SPECIES	264	BRI3 (ENSPSIG00000015097) #7	TECPR1 (ENSPSIG00000015002) #8	BHLHA15 (ENSPSIG00000001236) #9	LMTK2 (ENSPSIG00000014987) #10	ENSPSIG00000014979	ENSPSIG00000014977	ENSPSIG00000014109 #12	ENSPSIG00000013713 #13	PMS2 (ENSPSIG00000013504) #14	AIMP2 (ENSPSIG00000013497) #16	ANKRD61 (ENSPSIG00000001228) #17	EIF2AK1 (ENSPSIG00000013413) #18	USP42 (ENSPSIG00000013406) #19	CYTH3 (ENSPSIG00000012850) #20	ENSPSIG00000012837	RAC1 (ENSPSIG00000012649) #22	DAGLB (ENSPSIG00000012043) #23	KDELR2 (ENSPSIG00000011493) #24	ENSPSIG00000011252	ENSPSIG00000011249	ENSPSIG00000011242	ENSPSIG00000011150	IGSF6 (ENSPSIG00000011142)	METTL9 (ENSPSIG00000010487)	ENSPSIG00000010072	CDR2 (ENSPSIG00000009869)	POLR3E (ENSPSIG00000009701)	EEF2K (ENSPSIG00000009639)	ENSPSIG00000009631	SDR42E2 (ENSPSIG00000009465)
Archosauria	ANCESTRAL SPECIES	8	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT01040000244002	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00950000184989	ENSGT00940000155825 #20	ENSGT01070000254102	ENSGT00390000014156	ENSGT00390000014547	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393.a	ENSGT00940000160393.b	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915
Aves	ANCESTRAL SPECIES	11	ENSGT00940000165760	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT01040000244002	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b.w #19	ENSGT00950000184989	ENSGT00940000155825 #20	ENSGT01070000254102	ENSGT00390000014547	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393.a	ENSGT00940000160393.b	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915
Neognathae	ANCESTRAL SPECIES	10	ENSGT00940000165760	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT01040000244002	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b.w #19	ENSGT00950000184989	ENSGT00940000155825 #20	ENSGT00390000014547	ENSGT01070000254102	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393.a	ENSGT00940000160393.b	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915
Galloanserae	ANCESTRAL SPECIES	9	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000165760	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b.w #19	ENSGT00940000155825 #20	ENSGT00390000014547	ENSGT01070000254102	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393.a	ENSGT00940000160393.b	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915
Anatidae	ANCESTRAL SPECIES	7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000165760	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b.w #19	ENSGT00940000155825 #20	ENSGT01070000254102	ENSGT00390000014547	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393.a	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915	ENSGT00390000000237
Duck	MODERN SPECIES	6	BAIAP2L1 (ENSAPLG00000006154)	BRI3 (ENSAPLG00000006151) #7	TECPR1 (ENSAPLG00000005628) #8	LMTK2 (ENSAPLG00000005439) #10	ENSAPLG00000005423	ENSAPLG00000028327	ENSAPLG00000005393	ENSAPLG00000004993 #12	ENSAPLG00000004779 #13	PMS2 (ENSAPLG00000004599) #14	AIMP2 (ENSAPLG00000004525) #16	EIF2AK1 (ENSAPLG00000004173) #18	ANKRD61 (ENSAPLG00000018460) #17	ENSAPLG00000026175 #19	CYTH3 (ENSAPLG00000003580) #20	RAC1 (ENSAPLG00000003568) #22	DAGLB (ENSAPLG00000003340) #23	ENSAPLG00000026279	KDELR2 (ENSAPLG00000002978) #24	OTOA (ENSAPLG00000004657)	METTL9 (ENSAPLG00000004648)	ENSAPLG00000004542	CDR2 (ENSAPLG00000004288)	POLR3E (ENSAPLG00000003834)	EEF2K (ENSAPLG00000003456)	SDR42E2 (ENSAPLG00000003241)	ENSAPLG00000002824	MOSMO (ENSAPLG00000002716)	PDZD9 (ENSAPLG00000002708)	UQCRC2 (ENSAPLG00000002008)	CRYM (ENSAPLG00000029698)
Pink-footed goose	MODERN SPECIES	176	TECPR1 (ENSABRG00000011226) #8	BHLHA15 (ENSABRG00000011538) #9	LMTK2 (ENSABRG00000011547) #10	ENSABRG00000011599	ENSABRG00000011606	ENSABRG00000011620 #12	ENSABRG00000011761 #13	PMS2 (ENSABRG00000011884) #14	AIMP2 (ENSABRG00000012647) #16	EIF2AK1 (ENSABRG00000012654) #18	ENSABRG00000012674 #17	USP42 (ENSABRG00000012713) #19	CYTH3 (ENSABRG00000012839) #20	ENSABRG00000012852	ENSABRG00000012860	RAC1 (ENSABRG00000012870) #22	DAGLB (ENSABRG00000012930) #23	KDELR2 (ENSABRG00000013319) #24	ENSABRG00000013329
Phasianidae	ANCESTRAL SPECIES	10	ENSGT00390000002886.b.a	ENSGT01040000240668	ENSGT00940000156222.b	ENSGT00950000182696.A.b	ENSGT00950000182894.A.b.a	ENSGT00950000183193.A.c.a	ENSGT00390000004428.b	ENSGT00940000166211	ENSGT00390000013271	ENSGT00390000013826	ENSGT00940000161164	ENSGT00390000001653	ENSGT00940000155825 #20	ENSGT00390000014547	ENSGT01070000254102	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393.a	ENSGT00940000160393.b	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000004090	ENSGT00510000047820
Japanese quail	MODERN SPECIES	5	ENSCJPG00005016056	GRIN2A (ENSCJPG00005016052)	ENSCJPG00005016051	EMP2 (ENSCJPG00005016050)	TEKT5 (ENSCJPG00005016048)	NUBP1 (ENSCJPG00005015943)	TVP23A (ENSCJPG00005015942)	ENSCJPG00005015941	DEXI (ENSCJPG00005015940)	CLEC16A (ENSCJPG00005015929)	SOCS1 (ENSCJPG00005015928)	RMI2 (ENSCJPG00005015927)	CYTH3 (ENSCJPG00005015904) #20	ENSCJPG00005015903	ENSCJPG00005015902	RAC1 (ENSCJPG00005015901) #22	DAGLB (ENSCJPG00005015672) #23	KDELR2 (ENSCJPG00005015665) #24	OTOA (ENSCJPG00005015664)	IGSF6 (ENSCJPG00005015663)	METTL9 (ENSCJPG00005015662)	ENSCJPG00005015660	CDR2 (ENSCJPG00005015659)	POLR3E (ENSCJPG00005015637)	EEF2K (ENSCJPG00005015537)	SDR42E2 (ENSCJPG00005015525)	VWA3A (ENSCJPG00005015484)	MOSMO (ENSCJPG00005015478)	CCP110 (ENSCJPG00005015446)	GDE1 (ENSCJPG00005015445)	TMC5 (ENSCJPG00005015444)
Phasianidae_b	ANCESTRAL SPECIES	10	ENSGT00390000002886.b.a	ENSGT01040000240668	ENSGT00940000156222.b	ENSGT00950000182696.A.b	ENSGT00950000182894.A.b.a	ENSGT00950000183193.A.c.a	ENSGT00390000004428.b	ENSGT00940000166211	ENSGT00390000013271	ENSGT00390000013826	ENSGT00940000161164	ENSGT00390000001653	ENSGT00940000155825 #20	ENSGT00390000014547	ENSGT01070000254102	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393.a	ENSGT00940000160393.b	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000004090	ENSGT00510000047820
Turkey	MODERN SPECIES	7	ENSMGAG00000007995	ENSMGAG00000020860	ENSMGAG00000018254	MOSMO (ENSMGAG00000008008)	ENSMGAG00000018923	ENSMGAG00000008011	ENSMGAG00000008040	EEF2K (ENSMGAG00000008053)	ENSMGAG00000008083	ENSMGAG00000022522	ENSMGAG00000008133	OTOA (ENSMGAG00000008162)	ENSMGAG00000008150	METTL9 (ENSMGAG00000008143)	KDELR2 (ENSMGAG00000008225) #24	ENSMGAG00000008255 #22	ENSMGAG00000008231 #23	ENSMGAG00000008266 #20	ENSMGAG00000021170 #20	ENSMGAG00000015576	ENSMGAG00000008324	DEXI (ENSMGAG00000018604)	ENSMGAG00000008357	ENSMGAG00000008390	ENSMGAG00000008374	ENSMGAG00000008405	ENSMGAG00000008419	ENSMGAG00000016606	ENSMGAG00000008432	ENSMGAG00000022646	ENSMGAG00000008488
Chicken	MODERN SPECIES	5	C16orf72 (ENSGALG00010018381)	ENSGALG00010022555	GRIN2A (ENSGALG00010019595)	EMP2 (ENSGALG00010019495)	TEKT5 (ENSGALG00010019488)	NUBP1 (ENSGALG00010019471)	TVP23A (ENSGALG00010019390)	ENSGALG00010019376	DEXI (ENSGALG00010019336)	CLEC16A (ENSGALG00010019316)	SOCS1 (ENSGALG00010019269)	RMI2 (ENSGALG00010019248)	CYTH3 (ENSGALG00010019239) #20	ENSGALG00010019205	ENSGALG00010019157	RAC1 (ENSGALG00010019145) #22	DAGLB (ENSGALG00010019120) #23	KDELR2 (ENSGALG00010019108) #24	OTOA (ENSGALG00010019083)	IGSF6 (ENSGALG00010019051)	METTL9 (ENSGALG00010019043)	ENSGALG00010019035	ENSGALG00010019005	CDR2 (ENSGALG00010019030)	POLR3E (ENSGALG00010018948)	EEF2K (ENSGALG00010018922)	SDR42E2 (ENSGALG00010017855)	ENSGALG00010017834	VWA3A (ENSGALG00010017822)	C14H16ORF52 (ENSGALG00010017809)	CCP110 (ENSGALG00010021058)
Neognathae_b	ANCESTRAL SPECIES	12	ENSGT00940000158475 #10	ENSGT00940000165760	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT01040000244002	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00940000154596.b.w #19	ENSGT00950000184989	ENSGT00940000155825 #20	ENSGT01070000254102	ENSGT00390000014547	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393.a	ENSGT00940000160393.b	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915
Passeriformes	ANCESTRAL SPECIES	11	ENSGT00940000158475 #10	ENSGT00940000165760	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT01040000244002	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00940000154596.b.w #19	ENSGT00950000184989	ENSGT00940000155825 #20	ENSGT00390000014547	ENSGT01070000254102	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393.a	ENSGT00940000160393.b	ENSGT00940000159290	ENSGT00390000018266	ENSGT00940000154915	ENSGT00390000000237
Passeriformes_d	ANCESTRAL SPECIES	11	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000165760	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT01040000244002	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00940000154596.b.w #19	ENSGT00940000155825 #20	ENSGT00390000014547	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000013648	ENSGT00390000014131	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393.a	ENSGT00940000160393.b	ENSGT00940000159290	ENSGT00390000018266	ENSGT00940000154915	ENSGT00390000000237
Flycatcher	MODERN SPECIES	5	BRI3 (ENSFALG00000013968) #7	TECPR1 (ENSFALG00000013969) #8	BHLHA15 (ENSFALG00000026150) #9	LMTK2 (ENSFALG00000013970) #10	ENSFALG00000013971	ENSFALG00000013972	ENSFALG00000013973	ENSFALG00000013974 #12	ENSFALG00000013975 #13	PMS2 (ENSFALG00000013976) #14	AIMP2 (ENSFALG00000023978) #16	EIF2AK1 (ENSFALG00000013978) #18	ENSFALG00000013980 #19	CYTH3 (ENSFALG00000013981) #20	ENSFALG00000025194	RAC1 (ENSFALG00000013983) #22	DAGLB (ENSFALG00000013985) #23	KDELR2 (ENSFALG00000027292) #24	ENSFALG00000013991	ENSFALG00000013993	IGSF6 (ENSFALG00000013994)	ENSFALG00000013995	CDR2 (ENSFALG00000013996)	POLR3E (ENSFALG00000013997)	EEF2K (ENSFALG00000013999)	ENSFALG00000014001	ENSFALG00000014003	VWA3A (ENSFALG00000014005)	MOSMO (ENSFALG00000014006)	UQCRC2 (ENSFALG00000025314)	CRYM (ENSFALG00000014011)
Passeriformes_g	ANCESTRAL SPECIES	12	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000165760	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT01040000244002	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00940000154596.b.w #19	ENSGT00940000155825 #20	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000013648	ENSGT00390000014131	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393.a	ENSGT00940000160393.b	ENSGT00940000159290	ENSGT00390000018266	ENSGT00940000154915	ENSGT00390000000237
Medium ground finch	MODERN SPECIES	22	BAIAP2L1 (ENSGFOG00000000061)	BRI3 (ENSGFOG00000000066) #7	TECPR1 (ENSGFOG00000000070) #8	BHLHA15 (ENSGFOG00000000072) #9	LMTK2 (ENSGFOG00000000075) #10	ENSGFOG00000000082	ENSGFOG00000000083	ENSGFOG00000000088	ENSGFOG00000000096 #12	ENSGFOG00000000110 #13	PMS2 (ENSGFOG00000000145) #14	AIMP2 (ENSGFOG00000000260) #16	EIF2AK1 (ENSGFOG00000000271) #18	ENSGFOG00000000289 #19	CYTH3 (ENSGFOG00000000298) #20	RAC1 (ENSGFOG00000000305) #22	DAGLB (ENSGFOG00000000312) #23	KDELR2 (ENSGFOG00000000322) #24	OTOA (ENSGFOG00000000342)	METTL9 (ENSGFOG00000000361)	IGSF6 (ENSGFOG00000000369)	ENSGFOG00000000378	CDR2 (ENSGFOG00000000390)	POLR3E (ENSGFOG00000000419)	EEF2K (ENSGFOG00000000467)	SDR42E2 (ENSGFOG00000000506)	ENSGFOG00000000526	MOSMO (ENSGFOG00000000555)	UQCRC2 (ENSGFOG00000000563)	CRYM (ENSGFOG00000000817)	ANKS4B (ENSGFOG00000000828)
Passeroidea	ANCESTRAL SPECIES	11	ENSGT00990000204962	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000165760	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT01040000244002	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00940000154596.b.w #19	ENSGT00940000155825 #20	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393.a	ENSGT00940000160393.b	ENSGT00940000159290	ENSGT00390000018266	ENSGT00940000154915	ENSGT00390000000237
Zebra finch	MODERN SPECIES	5	BAIAP2L1 (ENSTGUG00000008652)	ENSTGUG00000008663	TECPR1 (ENSTGUG00000008666) #8	BHLHA15 (ENSTGUG00000026002) #9	LMTK2 (ENSTGUG00000008720) #10	ENSTGUG00000008734	ENSTGUG00000026871	ENSTGUG00000018409	ENSTGUG00000008740 #12	ENSTGUG00000023675 #13	PMS2 (ENSTGUG00000008778) #14	AIMP2 (ENSTGUG00000008804) #16	EIF2AK1 (ENSTGUG00000008807) #18	ENSTGUG00000008831 #19	CYTH3 (ENSTGUG00000008849) #20	RAC1 (ENSTGUG00000008876) #22	DAGLB (ENSTGUG00000008882) #23	KDELR2 (ENSTGUG00000008903) #24	OTOA (ENSTGUG00000008917)	ENSTGUG00000008963	METTL9 (ENSTGUG00000008956)	ENSTGUG00000008965	CDR2 (ENSTGUG00000027117)	POLR3E (ENSTGUG00000008986)	EEF2K (ENSTGUG00000009003)	ENSTGUG00000009036	ENSTGUG00000009039	VWA3A (ENSTGUG00000009055)	MOSMO (ENSTGUG00000022564)	UQCRC2 (ENSTGUG00000009075)	CRYM (ENSTGUG00000009095)
Common canary	MODERN SPECIES	17	ENSSCAG00000010139	TECPR1 (ENSSCAG00000010142) #8	BHLHA15 (ENSSCAG00000010147) #9	LMTK2 (ENSSCAG00000010161) #10	ENSSCAG00000010190	ENSSCAG00000010195	ENSSCAG00000010201	ENSSCAG00000010212 #12	ENSSCAG00000010234	ENSSCAG00000010238 #13	PMS2 (ENSSCAG00000010260) #14	AIMP2 (ENSSCAG00000010433) #16	EIF2AK1 (ENSSCAG00000010434) #18	ENSSCAG00000010437 #19	CYTH3 (ENSSCAG00000010492) #20	RAC1 (ENSSCAG00000010511) #22	DAGLB (ENSSCAG00000010521) #23	KDELR2 (ENSSCAG00000010550) #24	OTOA (ENSSCAG00000010557)	METTL9 (ENSSCAG00000010575)	IGSF6 (ENSSCAG00000010576)	ENSSCAG00000010577	CDR2 (ENSSCAG00000010579)	POLR3E (ENSSCAG00000010587)	EEF2K (ENSSCAG00000010599)	ENSSCAG00000010618	ENSSCAG00000010624	MOSMO (ENSSCAG00000010631)	UQCRC2 (ENSSCAG00000010638)	CRYM (ENSSCAG00000010646)	ANKS4B (ENSSCAG00000010653)
Great tit	MODERN SPECIES	5	BHLHA15 (ENSPMJG00000017240) #9	LMTK2 (ENSPMJG00000017238) #10	ENSPMJG00000017237	ENSPMJG00000017236	ENSPMJG00000017235	ENSPMJG00000017234 #12	ENSPMJG00000017233 #13	PMS2 (ENSPMJG00000017189) #14	AIMP2 (ENSPMJG00000017188) #16	EIF2AK1 (ENSPMJG00000017187) #18	ENSPMJG00000017186 #19	ENSPMJG00000017185	CYTH3 (ENSPMJG00000017184) #20	ENSPMJG00000017183	ENSPMJG00000017182	RAC1 (ENSPMJG00000017181) #22	DAGLB (ENSPMJG00000017180) #23	KDELR2 (ENSPMJG00000017179) #24	OTOA (ENSPMJG00000017178)	IGSF6 (ENSPMJG00000017177)	METTL9 (ENSPMJG00000017176)	ENSPMJG00000017175	CDR2 (ENSPMJG00000017174)	POLR3E (ENSPMJG00000017173)	EEF2K (ENSPMJG00000017172)	ENSPMJG00000017171	ENSPMJG00000017170	VWA3A (ENSPMJG00000017169)	MOSMO (ENSPMJG00000017168)	UQCRC2 (ENSPMJG00000017166)	CRYM (ENSPMJG00000017165)
Neognathae_c	ANCESTRAL SPECIES	14	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000165760	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00940000157605 #18	ENSGT00940000154596.b.w #19	ENSGT00940000155825 #20	ENSGT01070000254102	ENSGT00390000014547	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393.a	ENSGT00940000159290	ENSGT00390000018266	ENSGT00390000008326	ENSGT00940000154915	ENSGT00390000000237
Kakapo	MODERN SPECIES	21	NPTX2 (ENSSHBG00005005013)	BAIAP2L1 (ENSSHBG00005005002)	BRI3 (ENSSHBG00005004995) #7	TECPR1 (ENSSHBG00005004982) #8	BHLHA15 (ENSSHBG00005004972) #9	LMTK2 (ENSSHBG00005004964) #10	ENSSHBG00005004961	ENSSHBG00005004956	ENSSHBG00005004952 #12	ENSSHBG00005004917 #13	PMS2 (ENSSHBG00005004899) #14	AIMP2 (ENSSHBG00005004893) #16	EIF2AK1 (ENSSHBG00005004878) #18	CYTH3 (ENSSHBG00005004871) #20	ENSSHBG00005004837	RAC1 (ENSSHBG00005004829) #22	DAGLB (ENSSHBG00005004793) #23	KDELR2 (ENSSHBG00005004759) #24	OTOA (ENSSHBG00005004742)	ENSSHBG00005004737	METTL9 (ENSSHBG00005004730)	ENSSHBG00005004725	CDR2 (ENSSHBG00005004721)	POLR3E (ENSSHBG00005004704)	EEF2K (ENSSHBG00005004662)	VWA3A (ENSSHBG00005004619)	MOSMO (ENSSHBG00005004563)	PDZD9 (ENSSHBG00005004550)	UQCRC2 (ENSSHBG00005004541)	ANKS4B (ENSSHBG00005004531)	CRYM (ENSSHBG00005004498)
Golden eagle	MODERN SPECIES	17	TECPR1 (ENSACCG00020015854) #8	BHLHA15 (ENSACCG00020015884) #9	LMTK2 (ENSACCG00020015896) #10	ENSACCG00020015922	ENSACCG00020015936	ENSACCG00020008783	ENSACCG00020008809 #12	ENSACCG00020008831 #13	PMS2 (ENSACCG00020008879) #14	AIMP2 (ENSACCG00020008909) #16	EIF2AK1 (ENSACCG00020008927) #18	ENSACCG00020008962 #19	CYTH3 (ENSACCG00020008998) #20	ENSACCG00020009023	ENSACCG00020009032	RAC1 (ENSACCG00020009045) #22	DAGLB (ENSACCG00020009067) #23	KDELR2 (ENSACCG00020009083) #24	OTOA (ENSACCG00020009113)	METTL9 (ENSACCG00020009139)	IGSF6 (ENSACCG00020009165)	ENSACCG00020009180	ENSACCG00020009190	CDR2 (ENSACCG00020009217)	POLR3E (ENSACCG00020009232)	EEF2K (ENSACCG00020009262)	SDR42E2 (ENSACCG00020009295)	ENSACCG00020009311	MOSMO (ENSACCG00020009321)	UQCRC2 (ENSACCG00020009343)	CRYM (ENSACCG00020009366)
African ostrich	MODERN SPECIES	918	ENSSCUG00000015208	TECPR1 (ENSSCUG00000015213) #8	BHLHA15 (ENSSCUG00000015220) #9	LMTK2 (ENSSCUG00000015228) #10	ENSSCUG00000015238	ENSSCUG00000015241	ENSSCUG00000015246	ENSSCUG00000015249 #12	ENSSCUG00000015254 #13	PMS2 (ENSSCUG00000015258) #14	AIMP2 (ENSSCUG00000015260) #16	EIF2AK1 (ENSSCUG00000015261) #18	ANKRD61 (ENSSCUG00000015264) #17	ENSSCUG00000015268 #19	CYTH3 (ENSSCUG00000015271) #20	RAC1 (ENSSCUG00000015275) #22	DAGLB (ENSSCUG00000015280) #23	KDELR2 (ENSSCUG00000015284) #24	OTOA (ENSSCUG00000015289)	METTL9 (ENSSCUG00000015301)	IGSF6 (ENSSCUG00000015305)	ENSSCUG00000015308	CDR2 (ENSSCUG00000015311)	POLR3E (ENSSCUG00000015320)	EEF2K (ENSSCUG00000015335)	ENSSCUG00000015345	ENSSCUG00000015351	VWA3A (ENSSCUG00000015365)	MOSMO (ENSSCUG00000015383)	PDZD9 (ENSSCUG00000015385)	UQCRC2 (ENSSCUG00000015387)
Anura	ANCESTRAL SPECIES	43	ENSGT00940000153560.b.b.a	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000157605 #18	ENSGT00390000015826 #16	ENSGT00940000155381 #14	ENSGT00940000154596.b.mb #19	ENSGT00940000155825 #20	ENSGT00390000014547	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393	ENSGT00940000159290	ENSGT00390000018266	ENSGT00940000154915	ENSGT00390000000237	ENSGT00390000017548.a
Frog	MODERN SPECIES	9	sdr42e2 (ENSXETG00000033324)	eef2k (ENSXETG00000016677)	polr3e (ENSXETG00000016663)	cdr2 (ENSXETG00000045179)	ENSXETG00000016661	mettl9 (ENSXETG00000016660)	ENSXETG00000046394	otoa (ENSXETG00000024067)	kdelr1 (ENSXETG00000027589) #24	pms2 (ENSXETG00000024066) #14	usp42 (ENSXETG00000024065) #19	ENSXETG00000036818	ENSXETG00000036251	cyth3 (ENSXETG00000024063) #20	ENSXETG00000036145	rac1 (ENSXETG00000048069) #22	daglb (ENSXETG00000031368) #23	ENSXETG00000047638	aldob (ENSXETG00000024058)	prpf18 (ENSXETG00000024057)	aimp2 (ENSXETG00000027596) #16	eif2ak1 (ENSXETG00000024055) #18	rsph10b (ENSXETG00000024054) #13	ccz1b (ENSXETG00000024053) #12	ocm1 (ENSXETG00000033720)	ocm4.3 (ENSXETG00000047928)	ENSXETG00000003921	lmtk2 (ENSXETG00000024039) #10	bhlha15 (ENSXETG00000032164) #9	tecpr1 (ENSXETG00000024038) #8	bri3 (ENSXETG00000024037) #7
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	11	ENSLLEG00000024873	ENSLLEG00000025028	ENSLLEG00000025286	ENSLLEG00000025316	ENSLLEG00000025575	ENSLLEG00000025601	LGALS1 (ENSLLEG00000025679)	SH3BP1 (ENSLLEG00000025727)	ENSLLEG00000025829	LGALS2 (ENSLLEG00000025979)	ENSLLEG00000026089	ELFN2 (ENSLLEG00000026126)	CYTH4 (ENSLLEG00000026146)	ENSLLEG00000026221	ENSLLEG00000026238	ENSLLEG00000026286 #22	ENSLLEG00000026314	SSTR3 (ENSLLEG00000026345)	ENSLLEG00000026354	ENSLLEG00000026374	TMPRSS6 (ENSLLEG00000026470)	ENSLLEG00000026729	MPST (ENSLLEG00000026824)	ENSLLEG00000026848	ENSLLEG00000026887	ENSLLEG00000026956	NCF4 (ENSLLEG00000027022)	ENSLLEG00000027084	PVALB (ENSLLEG00000027102)	IFT27 (ENSLLEG00000027138)	ENSLLEG00000027171
Leishan spiny toad	MODERN SPECIES	10	ENSLLEG00000019477	ENSLLEG00000018567 #12	ENSLLEG00000017930 #13	EIF2AK1 (ENSLLEG00000017579) #18	ENSLLEG00000017472	ENSLLEG00000017438	ENSLLEG00000017361	AIMP2 (ENSLLEG00000017247) #16	PMS2 (ENSLLEG00000017010) #14	USP42 (ENSLLEG00000016799) #19	CYTH3 (ENSLLEG00000016339) #20	ENSLLEG00000016305	ENSLLEG00000016140	ENSLLEG00000016104	ENSLLEG00000016077	ENSLLEG00000015890 #22	DAGLB (ENSLLEG00000015435) #23	KDELR2 (ENSLLEG00000015298) #24	ENSLLEG00000015227	OTOA (ENSLLEG00000015033)	ENSLLEG00000014964	METTL9 (ENSLLEG00000014917)	ENSLLEG00000014838	CDR2 (ENSLLEG00000028922)	POLR3E (ENSLLEG00000028808)	EEF2K (ENSLLEG00000028675)	SDR42E2 (ENSLLEG00000028529)	VWA3A (ENSLLEG00000028343)	ENSLLEG00000028311	ENSLLEG00000028282	ENSLLEG00000028271
Coelacanth	DUPLICATION
Coelacanth	MODERN SPECIES	2968												ENSLACG00000000281	ENSLACG00000002371	NCF4 (ENSLACG00000002960)	PVALB (ENSLACG00000004101)	ENSLACG00000022526 #22	rac2 (ENSLACG00000005531)	SSTR5 (ENSLACG00000006335)
Coelacanth	MODERN SPECIES	668				ENSLACG00000003101	pvalb3 (ENSLACG00000004235)	pvalb9 (ENSLACG00000006803)	ccz1 (ENSLACG00000007500) #12	ENSLACG00000008794 #13	PMS2 (ENSLACG00000009368) #14	AIMP2 (ENSLACG00000009694) #16	EIF2AK1 (ENSLACG00000010388) #18	ANKRD61 (ENSLACG00000010613) #17	USP42 (ENSLACG00000011343) #19	CYTH3 (ENSLACG00000012095) #20	ENSLACG00000013162	RAC1 (ENSLACG00000013226) #22	DAGLB (ENSLACG00000013609) #23	KDELR2 (ENSLACG00000013988) #24	OTOA (ENSLACG00000014194)	METTL9 (ENSLACG00000014883)	mfsd13al (ENSLACG00000015117)	CDR2 (ENSLACG00000015260)	POLR3E (ENSLACG00000015514)
Actinopterygii	ANCESTRAL SPECIES	25	ENSGT01060000248591.a.a.a.a	ENSGT00940000153560.b.b.a	ENSGT01060000253155	ENSGT00940000158475 #10	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014547	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393	ENSGT00940000159290	ENSGT00390000018266	ENSGT00940000154915	ENSGT00550000074840	ENSGT00940000166319
Reedfish	MODERN SPECIES	2	ENSECRG00000020713	ENSECRG00000020502	ENSECRG00000020347	ENSECRG00000020316	ENSECRG00000020297	pvalb8 (ENSECRG00000020279)	ENSECRG00000020239	ccz1 (ENSECRG00000019689) #12	RSPH10B (ENSECRG00000019574) #13	PMS2 (ENSECRG00000019526) #14	aimp2 (ENSECRG00000019458) #16	eif2ak1 (ENSECRG00000019375) #18	USP42 (ENSECRG00000019333) #19	CYTH3 (ENSECRG00000019280) #20	SMIM10 (ENSECRG00000019261)	rac1b (ENSECRG00000019090) #22	DAGLB (ENSECRG00000019050) #23	kdelr2b (ENSECRG00000019014) #24	OTOA (ENSECRG00000018956)	ENSECRG00000018936	mettl9 (ENSECRG00000018919)	mfsd13al (ENSECRG00000018900)	CDR2 (ENSECRG00000018872)	polr3e (ENSECRG00000018820)	eef2k (ENSECRG00000018766)	SDR42E2 (ENSECRG00000018711)	ENSECRG00000018673	mosmob (ENSECRG00000018652)	uqcrc2b (ENSECRG00000018614)	snu13a (ENSECRG00000018577)	ENSECRG00000018546
Neopterygii	DUPLICATION
Neopterygii	DUPLICATION
Neopterygii	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.w.a #22
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.w.a #22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.w.a #22
Euteleosteomorpha	ANCESTRAL SPECIES	45	ENSGT00510000047886.a.a #8	ENSGT00940000161824 #9	ENSGT00940000165760	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713 #12	ENSGT00940000158652	ENSGT00940000168282	ENSGT00940000155381 #14	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014547	ENSGT00940000155205	ENSGT00940000153500.a.a.w.a #22	ENSGT00980000198850	ENSGT00940000153500.a.a.w.b #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00390000011615.A.b	ENSGT00510000047537	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000160116.a	ENSGT00940000178242	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT00980000198917	ENSGT01030000234951
Acanthomorphata	ANCESTRAL SPECIES	23	ENSGT00950000183188.A.b	ENSGT00940000153560.b.b.a.g	ENSGT00510000047886.a.a #8	ENSGT00940000161824 #9	ENSGT00940000165760	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713 #12	ENSGT00940000158652	ENSGT00940000168282	ENSGT00940000155381 #14	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825.r #20	ENSGT00940000153500.a.a.w.a #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000018266	ENSGT00390000011615.A.b	ENSGT00510000047537	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000160116.a	ENSGT00940000178242	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT01030000234951	ENSGT00530000063996.a
Euacanthomorphacea	ANCESTRAL SPECIES	6	ENSGT00950000183188.A.b	ENSGT00940000153560.b.b.a.g	ENSGT00510000047886.a.a #8	ENSGT00940000161824 #9	ENSGT00940000165760	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713 #12	ENSGT00940000158652	ENSGT00940000168282	ENSGT00940000155381 #14	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825.r #20	ENSGT00940000153500.a.a.w.a #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000018266	ENSGT00390000011615.A.b	ENSGT00510000047537	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000160116.a	ENSGT00940000178242	ENSGT00940000178709	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT01030000234951
Percomorphaceae	ANCESTRAL SPECIES	5	ENSGT00950000183188.A.b	ENSGT00940000153560.b.b.a.g	ENSGT00510000047886.a.a #8	ENSGT00940000161824 #9	ENSGT00940000165760	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713 #12	ENSGT00940000158652	ENSGT00940000168282	ENSGT00940000155381 #14	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825.r #20	ENSGT00940000153500.a.a.w.a #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000018266	ENSGT00390000011615.A.b	ENSGT00510000047537	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000160116.a	ENSGT00940000178242	ENSGT00940000178709	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT01030000234951
Percomorphaceae_B	ANCESTRAL SPECIES	4	ENSGT00940000153560.b.b.a.g	ENSGT00510000047886.a.a #8	ENSGT00940000161824 #9	ENSGT00940000165760	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713 #12	ENSGT00940000177934	ENSGT00940000158652	ENSGT00940000168282	ENSGT00940000155381 #14	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825.r #20	ENSGT00940000153500.a.a.w.a #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000011615.A.b	ENSGT00510000047537	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000160116.a	ENSGT00940000178242	ENSGT00940000178709	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT01030000234951	ENSGT00530000063996.a
Ovalentaria	ANCESTRAL SPECIES	13	ENSGT00940000153560.b.b.a.g	ENSGT00510000047886.a.a #8	ENSGT00940000161824 #9	ENSGT00940000165760	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713 #12	ENSGT00940000177934	ENSGT00940000158652	ENSGT00940000168282	ENSGT00940000155381 #14	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825.r #20	ENSGT00940000153500.a.a.w.a #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000011615.A.b	ENSGT00510000047537	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000160116.a	ENSGT00940000178242	ENSGT00940000178709	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT01030000234951	ENSGT00530000063996.a
Atherinomorphae	ANCESTRAL SPECIES	10	ENSGT01060000248591.a.a.a.a.a	ENSGT00950000183188.A.b	ENSGT00940000153560.b.b.a.g	ENSGT00510000047886.a.a #8	ENSGT00940000161824 #9	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713 #12	ENSGT00940000158652	ENSGT00940000168282	ENSGT00940000155381 #14	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825.r #20	ENSGT00940000153500.a.a.w.a #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000011615.A.b	ENSGT00510000047537	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000160116.a	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT01030000234951	ENSGT00530000063996.a	ENSGT00940000155575.i.a	ENSGT00940000159093
Oryzias	ANCESTRAL SPECIES	11	ENSGT00390000017961	ENSGT01060000248591.a.a.a.a.a	ENSGT00950000183188.A.b	ENSGT00940000153560.b.b.a.g	ENSGT00510000047886.a.a #8	ENSGT00940000161824 #9	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713 #12	ENSGT00940000158652	ENSGT00940000168282	ENSGT00940000155381 #14	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00940000155825.r #20	ENSGT00940000153500.a.a.w.a #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00390000011615.A.b	ENSGT00510000047537	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000160116.a	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT01030000234951	ENSGT00940000155575.i.a	ENSGT00940000159093	ENSGT00940000156833.a	ENSGT00940000155148.a.b
Oryzias_b	ANCESTRAL SPECIES	9	ENSGT00390000017961	ENSGT01060000248591.a.a.a.a.a	ENSGT00950000183188.A.b	ENSGT00940000153560.b.b.a.g	ENSGT00510000047886.a.a #8	ENSGT00940000161824 #9	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713 #12	ENSGT00940000177934	ENSGT00940000168282	ENSGT00940000155381 #14	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00940000155825.r #20	ENSGT00940000153500.a.a.w.a #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00390000011615.A.b	ENSGT00510000047537	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000160116.a	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT00940000155575.i.a	ENSGT00940000159093	ENSGT00940000156833.a	ENSGT00940000155148.a.b	ENSGT00950000182951.A.b
Indian medaka	MODERN SPECIES	17	ENSOMEG00000006827	nptx2b (ENSOMEG00000006798)	tmem130 (ENSOMEG00000006782)	baiap2l1a (ENSOMEG00000006730)	ENSOMEG00000006559 #8	bhlha15 (ENSOMEG00000006532) #9	pvalb3 (ENSOMEG00000006520)	pvalb9 (ENSOMEG00000006494)	ccz1 (ENSOMEG00000006464) #12	ENSOMEG00000006376	ENSOMEG00000006365	PMS2 (ENSOMEG00000006353) #14	eif2ak1 (ENSOMEG00000006307) #18	ENSOMEG00000006278 #19	CYTH3 (ENSOMEG00000006221) #20	RAC1 (ENSOMEG00000006202) #22	crym (ENSOMEG00000006179)	snu13a (ENSOMEG00000006161)	ENSOMEG00000006125	ENSOMEG00000006081	TMEM235 (ENSOMEG00000006061)	birc5a (ENSOMEG00000006044)	FAAP100 (ENSOMEG00000006022)	fscn2b (ENSOMEG00000005983) ##35	BAHCC1 (ENSOMEG00000005958)	SLC38A10 (ENSOMEG00000005920)	ndufaf8 (ENSOMEG00000005876)	TEPSIN (ENSOMEG00000005864)	SLC16A6 (ENSOMEG00000005840)	arsg (ENSOMEG00000005829)	WIPI1 (ENSOMEG00000005782)
Cyprinodontiformes	ANCESTRAL SPECIES	13	ENSGT01060000248591.a.a.a.a.a	ENSGT00950000183188.A.b	ENSGT00940000153560.b.b.a.g	ENSGT00510000047886.a.a #8	ENSGT00940000161824 #9	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713 #12	ENSGT00940000158652	ENSGT00940000168282	ENSGT00940000155381 #14	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825.r #20	ENSGT00940000153500.a.a.w.a #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000011615.A.b	ENSGT00510000047537	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000160116.a	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT01030000234951	ENSGT00530000063996.a	ENSGT00940000155575.i.a	ENSGT00940000159093
Aplocheiloidei	ANCESTRAL SPECIES	4	ENSGT00950000183188.A.b	ENSGT00940000153560.b.b.a.g	ENSGT00510000047886.a.a #8	ENSGT00940000161824 #9	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713 #12	ENSGT00940000158652	ENSGT00940000168282	ENSGT00940000155381 #14	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825.r #20	ENSGT00940000155205.z.a	ENSGT00940000153500.a.a.w.a #22	ENSGT00940000155205.z.b	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000011615.A.b	ENSGT00510000047537	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000160116.a	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT01030000234951	ENSGT00530000063996.a	ENSGT00940000155575.i.a
Mangrove rivulus	DUPLICATION
Mangrove rivulus	DUPLICATION
Mangrove rivulus	MODERN SPECIES	43	TECPR1 (ENSKMAG00000008282) #8	bhlha15 (ENSKMAG00000008382) #9	pvalb3 (ENSKMAG00000008390)	pvalb9 (ENSKMAG00000008481)	ccz1 (ENSKMAG00000008500) #12	dlgap5 (ENSKMAG00000008550)	rsph10b (ENSKMAG00000008577)	PMS2 (ENSKMAG00000008603) #14	eif2ak1 (ENSKMAG00000008638) #18	ANKRD61 (ENSKMAG00000008674) #17	ENSKMAG00000008709 #19	ENSKMAG00000008722 #20	ENSKMAG00000008751	RAC1 (ENSKMAG00000008770) #22	RAC1 (ENSKMAG00000008784) #22	RAC1 (ENSKMAG00000008799) #22	ENSKMAG00000008812	crym (ENSKMAG00000008834)	snu13a (ENSKMAG00000008847)	uqcrc2b (ENSKMAG00000008870)	ENSKMAG00000008919	TMEM235 (ENSKMAG00000008938)	birc5a (ENSKMAG00000008950)	FAAP100 (ENSKMAG00000008970)	fscn2b (ENSKMAG00000009012) ##35	BAHCC1 (ENSKMAG00000009048)	SLC38A10 (ENSKMAG00000009099)	ndufaf8 (ENSKMAG00000009139)	TEPSIN (ENSKMAG00000009169)	ENSKMAG00000009226	AMZ2 (ENSKMAG00000009252)
Mangrove rivulus	MODERN SPECIES	43	tmem130 (ENSKMAG00000008237)	baiap2l1a (ENSKMAG00000008255)	TECPR1 (ENSKMAG00000008282) #8	bhlha15 (ENSKMAG00000008382) #9	pvalb3 (ENSKMAG00000008390)	pvalb9 (ENSKMAG00000008481)	ccz1 (ENSKMAG00000008500) #12	dlgap5 (ENSKMAG00000008550)	rsph10b (ENSKMAG00000008577)	PMS2 (ENSKMAG00000008603) #14	eif2ak1 (ENSKMAG00000008638) #18	ANKRD61 (ENSKMAG00000008674) #17	ENSKMAG00000008709 #19	ENSKMAG00000008722 #20	ENSKMAG00000008751	RAC1 (ENSKMAG00000008770) #22	RAC1 (ENSKMAG00000008784) #22	RAC1 (ENSKMAG00000008799) #22	ENSKMAG00000008812	crym (ENSKMAG00000008834)	snu13a (ENSKMAG00000008847)	uqcrc2b (ENSKMAG00000008870)	ENSKMAG00000008919	TMEM235 (ENSKMAG00000008938)	birc5a (ENSKMAG00000008950)	FAAP100 (ENSKMAG00000008970)	fscn2b (ENSKMAG00000009012) ##35	BAHCC1 (ENSKMAG00000009048)	SLC38A10 (ENSKMAG00000009099)	ndufaf8 (ENSKMAG00000009139)	TEPSIN (ENSKMAG00000009169)
Mangrove rivulus	MODERN SPECIES	43	baiap2l1a (ENSKMAG00000008255)	TECPR1 (ENSKMAG00000008282) #8	bhlha15 (ENSKMAG00000008382) #9	pvalb3 (ENSKMAG00000008390)	pvalb9 (ENSKMAG00000008481)	ccz1 (ENSKMAG00000008500) #12	dlgap5 (ENSKMAG00000008550)	rsph10b (ENSKMAG00000008577)	PMS2 (ENSKMAG00000008603) #14	eif2ak1 (ENSKMAG00000008638) #18	ANKRD61 (ENSKMAG00000008674) #17	ENSKMAG00000008709 #19	ENSKMAG00000008722 #20	ENSKMAG00000008751	RAC1 (ENSKMAG00000008770) #22	RAC1 (ENSKMAG00000008784) #22	RAC1 (ENSKMAG00000008799) #22	ENSKMAG00000008812	crym (ENSKMAG00000008834)	snu13a (ENSKMAG00000008847)	uqcrc2b (ENSKMAG00000008870)	ENSKMAG00000008919	TMEM235 (ENSKMAG00000008938)	birc5a (ENSKMAG00000008950)	FAAP100 (ENSKMAG00000008970)	fscn2b (ENSKMAG00000009012) ##35	BAHCC1 (ENSKMAG00000009048)	SLC38A10 (ENSKMAG00000009099)	ndufaf8 (ENSKMAG00000009139)	TEPSIN (ENSKMAG00000009169)	ENSKMAG00000009226
Cyprinodontoidei	ANCESTRAL SPECIES	28	ENSGT00390000017328.a.b	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000165576.a.a	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600.k	ENSGT00940000157746.e	ENSGT00940000155825.r #20	ENSGT00940000155205.x.a	ENSGT00940000155205.x.b	ENSGT00940000153500.a.a.w.a #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000011615.A.b	ENSGT00510000047537	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000160116.a	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT01030000234951	ENSGT00530000063996.a	ENSGT00940000155575.i.a	ENSGT00940000159093
Poeciliinae	ANCESTRAL SPECIES	10	ENSGT00390000017328.a.b	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000165576.a.a	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600.k	ENSGT00940000157746.e	ENSGT00940000155825.r #20	ENSGT00940000155205.x.a	ENSGT00940000155205.x.b.a	ENSGT00940000153500.a.a.w.a #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000011615.A.b	ENSGT00510000047537	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000160116.a	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT01030000234951	ENSGT00530000063996.a	ENSGT00940000155575.i.a	ENSGT00940000159093
Poecilia	ANCESTRAL SPECIES	15	ENSGT00390000017328.a.b	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000165576.b	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600.k	ENSGT00940000157746.e	ENSGT00940000155825.r #20	ENSGT00940000155205.x.a	ENSGT00940000155205.x.b.a	ENSGT00940000153500.a.a.w.a #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000011615.A.b	ENSGT00510000047537	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000160116.a	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT01030000234951	ENSGT00530000063996.a	ENSGT00940000155575.i.a	ENSGT00940000159093
NAME_6	ANCESTRAL SPECIES		ENSGT00390000017328.a.b	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000165576.b	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600.k	ENSGT00940000157746.e	ENSGT00940000155825.r #20	ENSGT00940000155205.x.a	ENSGT00940000155205.x.b.a	ENSGT00940000153500.a.a.w.a #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000011615.A.b	ENSGT00510000047537	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000160116.a	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT01030000234951	ENSGT00530000063996.a	ENSGT00940000155575.i.a	ENSGT00940000159093
Sailfin molly	MODERN SPECIES	58													ENSPLAG00000022200 #20	ENSPLAG00000022217	ENSPLAG00000022617	ENSPLAG00000022636 #22	crym (ENSPLAG00000022687)	snu13a (ENSPLAG00000022694)	uqcrc2b (ENSPLAG00000022748)	TMEM235 (ENSPLAG00000022798)	birc5a (ENSPLAG00000022804)	ENSPLAG00000022841	fscn2b (ENSPLAG00000022863) ##35	SLC38A10 (ENSPLAG00000022887)	ndufaf8 (ENSPLAG00000022917)	TEPSIN (ENSPLAG00000022928)	si:dkey-21c1.1 (ENSPLAG00000022931)	AMZ2 (ENSPLAG00000022939)	slc16a6a (ENSPLAG00000023051)	arsg (ENSPLAG00000023081)	WIPI1 (ENSPLAG00000023130)
Amazon molly	MODERN SPECIES	256	ENSPFOG00000020238	top2a (ENSPFOG00000016534)	ENSPFOG00000016322	rarab (ENSPFOG00000016312)	mki67 (ENSPFOG00000016223)	tut1 (ENSPFOG00000016195)	pyyb (ENSPFOG00000016152)	mpp2b (ENSPFOG00000016142)	ENSPFOG00000016079	ENSPFOG00000016052	itga3b (ENSPFOG00000015727)	ENSPFOG00000015583 #20	ENSPFOG00000015408	ENSPFOG00000015350	ENSPFOG00000015319	ENSPFOG00000015316 #22	crym (ENSPFOG00000015311)	snu13a (ENSPFOG00000015290)	uqcrc2b (ENSPFOG00000015271)	TMEM235 (ENSPFOG00000015138)	birc5a (ENSPFOG00000015136)	FAAP100 (ENSPFOG00000015135)	fscn2b (ENSPFOG00000015112) ##35	ENSPFOG00000015049	SLC38A10 (ENSPFOG00000014982)	TEPSIN (ENSPFOG00000014936)	ENSPFOG00000023844	AMZ2 (ENSPFOG00000014904)	slc16a6a (ENSPFOG00000014875)	arsg (ENSPFOG00000014812)	WIPI1 (ENSPFOG00000014721)
Guppy	MODERN SPECIES	449	ENSPREG00000020563	top2a (ENSPREG00000020534)	ENSPREG00000020520	rarab (ENSPREG00000020502)	mki67 (ENSPREG00000020481)	tut1 (ENSPREG00000020464)	pyyb (ENSPREG00000020449)	mpp2b (ENSPREG00000020433)	ENSPREG00000020425	ENSPREG00000020296	itga3b (ENSPREG00000020187)	ENSPREG00000020133 #20	ENSPREG00000020115	ENSPREG00000020112	ENSPREG00000020091	ENSPREG00000020082 #22	crym (ENSPREG00000020046)	snu13a (ENSPREG00000020035)	uqcrc2b (ENSPREG00000020005)	TMEM235 (ENSPREG00000019996)	birc5a (ENSPREG00000019989)	FAAP100 (ENSPREG00000019939)	fscn2b (ENSPREG00000019906) ##35	ENSPREG00000019882	SLC38A10 (ENSPREG00000019801)	ndufaf8 (ENSPREG00000019773)	TEPSIN (ENSPREG00000019747)	ENSPREG00000019742	AMZ2 (ENSPREG00000019723)	slc16a6a (ENSPREG00000019699)	arsg (ENSPREG00000019672)
Platyfish	MODERN SPECIES	1	ENSXMAG00000019659	top2a (ENSXMAG00000011303)	ENSXMAG00000011301	ENSXMAG00000028093	mki67 (ENSXMAG00000014627)	tut1 (ENSXMAG00000027272)	pyyb (ENSXMAG00000014622)	mpp2b (ENSXMAG00000014604)	ENSXMAG00000024623	ENSXMAG00000014511	itga3b (ENSXMAG00000014570)	CYTH3 (ENSXMAG00000014597) #20	ENSXMAG00000011324	ENSXMAG00000011307	ENSXMAG00000021707	ENSXMAG00000011081 #22	crym (ENSXMAG00000011082)	uqcrc2b (ENSXMAG00000011117)	TMEM235 (ENSXMAG00000011141)	birc5a (ENSXMAG00000011142)	FAAP100 (ENSXMAG00000011143)	fscn2b (ENSXMAG00000024668) ##35	BAHCC1 (ENSXMAG00000011149)	SLC38A10 (ENSXMAG00000016444)	ndufaf8 (ENSXMAG00000027641)	TEPSIN (ENSXMAG00000016437)	ENSXMAG00000028052	AMZ2 (ENSXMAG00000016432)	slc16a6a (ENSXMAG00000016424)	arsg (ENSXMAG00000016403)	WIPI1 (ENSXMAG00000024218)
Ovalentaria_B	ANCESTRAL SPECIES	7	ENSGT00940000153560.b.b.a.g	ENSGT00510000047886.a.a #8	ENSGT00940000161824 #9	ENSGT00940000165760	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713 #12	ENSGT00940000177934	ENSGT00940000158652	ENSGT00940000168282	ENSGT00940000155381 #14	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825.r #20	ENSGT00940000153500.a.a.w.a #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000011615.A.b	ENSGT00510000047537	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000160116.a	ENSGT00940000178242	ENSGT00940000178709	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT01030000234951	ENSGT00530000063996.a
Pomacentridae	ANCESTRAL SPECIES	13	ENSGT00940000153560.b.b.a.g	ENSGT00510000047886.a.a #8	ENSGT00940000161824 #9	ENSGT00940000165760	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713 #12	ENSGT00940000177934	ENSGT00940000158652	ENSGT00940000168282	ENSGT00940000155381 #14	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825.r #20	ENSGT00940000153500.a.a.w.a #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000011615.A.b	ENSGT00510000047537	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000160116.a	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT00530000063996.a	ENSGT00940000155575.i.a	ENSGT00940000159093	ENSGT00940000156833.a
Pomacentridae_A	ANCESTRAL SPECIES	11	ENSGT00940000153560.b.b.a.g	ENSGT00510000047886.a.a #8	ENSGT00940000161824 #9	ENSGT00940000165760	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713 #12	ENSGT00940000177934	ENSGT00940000158652	ENSGT00940000168282	ENSGT00940000155381 #14	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825.r #20	ENSGT00940000153500.a.a.w.a #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000011615.A.b	ENSGT00510000047537	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000160116.a	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT00530000063996.a	ENSGT00940000155575.i.a	ENSGT00940000159093	ENSGT00940000156833.a
Amphiprion	ANCESTRAL SPECIES	141	ENSGT00940000153560.b.b.a.g	ENSGT00510000047886.a.a #8	ENSGT00940000161824 #9	ENSGT00940000165760	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713 #12	ENSGT00940000177934	ENSGT00940000158652	ENSGT00940000168282	ENSGT00940000155381 #14	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b.k #19	ENSGT00940000155825.r #20	ENSGT00940000153500.a.a.w.a #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000011615.A.b	ENSGT00510000047537	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000178709	ENSGT00940000160116.a	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT00530000063996.a	ENSGT00940000155575.i.a	ENSGT00940000159093
Clown anemonefish	MODERN SPECIES	1481					ENSAOCG00000008675	pvalb3 (ENSAOCG00000008665)	pvalb9 (ENSAOCG00000008656)	ccz1 (ENSAOCG00000008636) #12	ENSAOCG00000008591	rsph10b (ENSAOCG00000008583)	PMS2 (ENSAOCG00000008560) #14	eif2ak1 (ENSAOCG00000008545) #18	ANKRD61 (ENSAOCG00000008528) #17	USP42 (ENSAOCG00000000497) #19	CYTH3 (ENSAOCG00000008455) #20	RAC1 (ENSAOCG00000008408) #22	crym (ENSAOCG00000008390)	snu13a (ENSAOCG00000008378)	uqcrc2b (ENSAOCG00000008369)	ENSAOCG00000008343
Orange clownfish	MODERN SPECIES	10	TECPR1 (ENSAPEG00000021974) #8	bhlha15 (ENSAPEG00000022084) #9	ENSAPEG00000022088	pvalb3 (ENSAPEG00000022100)	pvalb9 (ENSAPEG00000022113)	ccz1 (ENSAPEG00000022128) #12	ENSAPEG00000000303	dlgap5 (ENSAPEG00000000338)	ENSAPEG00000000356	PMS2 (ENSAPEG00000000435) #14	eif2ak1 (ENSAPEG00000000502) #18	ANKRD61 (ENSAPEG00000000541) #17	ENSAPEG00000000579 #19	USP42 (ENSAPEG00000000595) #19	CYTH3 (ENSAPEG00000000654) #20	RAC1 (ENSAPEG00000000662) #22	crym (ENSAPEG00000000669)	snu13a (ENSAPEG00000000691)	uqcrc2b (ENSAPEG00000000714)	ENSAPEG00000000775	TMEM235 (ENSAPEG00000000795)	birc5a (ENSAPEG00000000850)	FAAP100 (ENSAPEG00000000857)	fscn2b (ENSAPEG00000000911) ##35	ENSAPEG00000000946	SLC38A10 (ENSAPEG00000000964)	ndufaf8 (ENSAPEG00000001031)	TEPSIN (ENSAPEG00000001046)	AMZ2 (ENSAPEG00000001385)	slc16a6a (ENSAPEG00000001398)	arsg (ENSAPEG00000001409)
Spiny chromis	MODERN SPECIES	299		baiap2l1a (ENSAPOG00000000083)	TECPR1 (ENSAPOG00000003847) #8	bhlha15 (ENSAPOG00000003746) #9	ENSAPOG00000003738	pvalb3 (ENSAPOG00000003727)	pvalb9 (ENSAPOG00000003706)	ccz1 (ENSAPOG00000003682) #12	dlgap5 (ENSAPOG00000003614)	rsph10b (ENSAPOG00000003573)	PMS2 (ENSAPOG00000003550) #14	eif2ak1 (ENSAPOG00000003495) #18	ANKRD61 (ENSAPOG00000003476) #17	USP42 (ENSAPOG00000003444) #19	CYTH3 (ENSAPOG00000003398) #20	RAC1 (ENSAPOG00000003343) #22	crym (ENSAPOG00000003311)	snu13a (ENSAPOG00000003295)	uqcrc2b (ENSAPOG00000003279)	ENSAPOG00000003219	TMEM235 (ENSAPOG00000003204)	birc5a (ENSAPOG00000003183)	FAAP100 (ENSAPOG00000003167)	fscn2b (ENSAPOG00000000065) ##35	BAHCC1 (ENSAPOG00000003103)	SLC38A10 (ENSAPOG00000003075)	ndufaf8 (ENSAPOG00000003049)
Bicolor damselfish	MODERN SPECIES	85															ENSSPAG00000018528	ENSSPAG00000018537 #22	crym (ENSSPAG00000018561)	snu13a (ENSSPAG00000018586)	uqcrc2b (ENSSPAG00000018600)	ENSSPAG00000018613
Cichlidae	ANCESTRAL SPECIES	15	ENSGT01060000248591.a.a.a.a.a	ENSGT00950000183188.A.b	ENSGT00940000153560.b.b.a.g	ENSGT00510000047886.a.a #8	ENSGT00940000161824 #9	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713 #12	ENSGT00940000158652	ENSGT00940000168282	ENSGT00940000155381 #14	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00940000155825.r #20	ENSGT00940000153500.a.a.w.a #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000011615.A.b	ENSGT00510000047537	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000160116.a	ENSGT00940000178242	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT01030000234951	ENSGT00530000063996.a	ENSGT00940000155575.i.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	9	ENSGT01060000248591.a.a.a.a.a	ENSGT00950000183188.A.b	ENSGT00940000153560.b.b.a.g	ENSGT00510000047886.a.a #8	ENSGT00940000161824 #9	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713 #12	ENSGT00940000158652	ENSGT00940000168282	ENSGT00940000155381 #14	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00940000155825.r #20	ENSGT00940000153500.a.a.w.a #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000011615.A.b	ENSGT00510000047537	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000160116.a	ENSGT00940000178242	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT00530000063996.a	ENSGT00940000155575.i.a	ENSGT00940000159093
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	7	ENSGT01060000248591.a.a.a.a.a	ENSGT00950000183188.A.b	ENSGT00940000153560.b.b.a.g	ENSGT00510000047886.a.a #8	ENSGT00940000161824 #9	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713 #12	ENSGT00940000158652	ENSGT00940000168282	ENSGT00940000155381 #14	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00940000155825.r #20	ENSGT00940000153500.a.a.w.a #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000011615.A.b	ENSGT00510000047537	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000160116.a	ENSGT00940000178242	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT00530000063996.a	ENSGT00940000155575.i.a	ENSGT00940000159093
Haplochromini	ANCESTRAL SPECIES	22	ENSGT01060000248591.a.a.a.a.a	ENSGT00950000183188.A.b	ENSGT00940000153560.b.b.a.g	ENSGT00510000047886.a.a #8	ENSGT00940000161824 #9	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713 #12	ENSGT00940000158652	ENSGT00940000168282	ENSGT00940000155381 #14	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00940000155825.r #20	ENSGT00940000153500.a.a.w.a #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000011615.A.b	ENSGT00510000047537	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000160116.a	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT00530000063996.a	ENSGT00940000155575.i.a	ENSGT00940000159093	ENSGT00940000156833.a
Haplochromini_A	ANCESTRAL SPECIES	24	ENSGT00950000183188.A.b	ENSGT00940000153560.b.b.a.g	ENSGT00510000047886.a.a #8	ENSGT00940000161824 #9	ENSGT00940000180063	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713 #12	ENSGT00940000158652	ENSGT00940000168282	ENSGT00940000155381 #14	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00940000155825.r #20	ENSGT00940000153500.a.a.w.a #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000011615.A.b	ENSGT00510000047537	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000160116.a	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT00530000063996.a	ENSGT00940000155575.i.a	ENSGT00940000159093	ENSGT00940000156833.a
P. nyererei	MODERN SPECIES	300	nptx2b (ENSPNYG00000020166)	tmem130 (ENSPNYG00000020146)	baiap2l1a (ENSPNYG00000020079)	ENSPNYG00000020033 #8	bhlha15 (ENSPNYG00000020021) #9	ENSPNYG00000019982	pvalb3 (ENSPNYG00000019969)	pvalb9 (ENSPNYG00000019964)	ccz1 (ENSPNYG00000019901) #12	ENSPNYG00000019889	ENSPNYG00000019852	PMS2 (ENSPNYG00000019815) #14	ENSPNYG00000019792 #17	eif2ak1 (ENSPNYG00000019775) #18	ENSPNYG00000019653 #20	RAC1 (ENSPNYG00000019614) #22	crym (ENSPNYG00000019594)	snu13a (ENSPNYG00000019585)	uqcrc2b (ENSPNYG00000019557)	ENSPNYG00000019547	TMEM235 (ENSPNYG00000019527)	birc5a (ENSPNYG00000019515)	FAAP100 (ENSPNYG00000019491)	fscn2b (ENSPNYG00000019474) ##35	BAHCC1 (ENSPNYG00000019461)	SLC38A10 (ENSPNYG00000019430)	ndufaf8 (ENSPNYG00000019416)	TEPSIN (ENSPNYG00000019399)	AMZ2 (ENSPNYG00000019390)	slc16a6a (ENSPNYG00000019382)	arsg (ENSPNYG00000019371)
Haplochromini_B	ANCESTRAL SPECIES	24	ENSGT00950000183188.A.b	ENSGT00940000153560.b.b.a.g	ENSGT00510000047886.a.a #8	ENSGT00940000161824 #9	ENSGT00940000180063	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713 #12	ENSGT00940000158652	ENSGT00940000168282	ENSGT00940000155381 #14	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b.m.a #19	ENSGT00940000155825.r.a #20	ENSGT00940000153500.a.a.w.a #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000011615.A.b	ENSGT00510000047537	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000160116.a	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT00530000063996.a	ENSGT00940000155575.i.a	ENSGT00940000159093	ENSGT00940000156833.a
Zebra mbuna	MODERN SPECIES	1111	tmem130 (ENSMZEG00005008428)	baiap2l1a (ENSMZEG00005008444)	TECPR1 (ENSMZEG00005008470) #8	bhlha15 (ENSMZEG00005008547) #9	ENSMZEG00005008571	pvalb3 (ENSMZEG00005008599)	pvalb9 (ENSMZEG00005008618)	ccz1 (ENSMZEG00005008637) #12	dlgap5 (ENSMZEG00005008702)	ENSMZEG00005008720	PMS2 (ENSMZEG00005008759) #14	eif2ak1 (ENSMZEG00005008784) #18	ENSMZEG00005008801 #17	USP42 (ENSMZEG00005008831) #19	CYTH3 (ENSMZEG00005008872) #20	RAC1 (ENSMZEG00005008888) #22	crym (ENSMZEG00005008913)	snu13a (ENSMZEG00005008935)	uqcrc2b (ENSMZEG00005008967)	ENSMZEG00005009019	TMEM235 (ENSMZEG00005009034)	birc5a (ENSMZEG00005009050)	ENSMZEG00005009062	fscn2b (ENSMZEG00005009107) ##35	SLC38A10 (ENSMZEG00005009133)	ndufaf8 (ENSMZEG00005009174)	TEPSIN (ENSMZEG00005009181)	AMZ2 (ENSMZEG00005009195)	slc16a6a (ENSMZEG00005009217)	ENSMZEG00005009229	arsg (ENSMZEG00005009237)
Eastern happy	MODERN SPECIES	20	tmem130 (ENSACLG00000015380)	baiap2l1a (ENSACLG00000015328)	ENSACLG00000015288 #8	bhlha15 (ENSACLG00000015277) #9	ENSACLG00000015258	pvalb3 (ENSACLG00000015226)	pvalb9 (ENSACLG00000015212)	ccz1 (ENSACLG00000015146) #12	dlgap5 (ENSACLG00000015112)	rsph10b (ENSACLG00000015104)	PMS2 (ENSACLG00000015009) #14	ENSACLG00000014933 #17	eif2ak1 (ENSACLG00000014885) #18	USP42 (ENSACLG00000014788) #19	CYTH3 (ENSACLG00000014773) #20	RAC1 (ENSACLG00000014711) #22	crym (ENSACLG00000014677)	snu13a (ENSACLG00000014628)	uqcrc2b (ENSACLG00000014528)	ENSACLG00000014511	TMEM235 (ENSACLG00000014505)	birc5a (ENSACLG00000014498)	FAAP100 (ENSACLG00000014464)	fscn2b (ENSACLG00000014453) ##35	BAHCC1 (ENSACLG00000014434)	SLC38A10 (ENSACLG00000014386)	ndufaf8 (ENSACLG00000014372)	TEPSIN (ENSACLG00000014344)	AMZ2 (ENSACLG00000014332)	slc16a6a (ENSACLG00000014306)	arsg (ENSACLG00000014285)
Burton s mouthbrooder	MODERN SPECIES	419	nptx2b (ENSHBUG00000000654)	tmem130 (ENSHBUG00000021255)	baiap2l1a (ENSHBUG00000021270)	TECPR1 (ENSHBUG00000021330) #8	bhlha15 (ENSHBUG00000021348) #9	pvalb3 (ENSHBUG00000021378)	pvalb9 (ENSHBUG00000021384)	ccz1 (ENSHBUG00000021471) #12	dlgap5 (ENSHBUG00000021484)	rsph10b (ENSHBUG00000021507)	PMS2 (ENSHBUG00000021572) #14	ENSHBUG00000021619 #17	eif2ak1 (ENSHBUG00000021633) #18	ENSHBUG00000021665 #19	ENSHBUG00000021678 #20	RAC1 (ENSHBUG00000021707) #22	crym (ENSHBUG00000021736)	snu13a (ENSHBUG00000021745)	uqcrc2b (ENSHBUG00000021835)	ENSHBUG00000021865	TMEM235 (ENSHBUG00000021871)	birc5a (ENSHBUG00000021883)	FAAP100 (ENSHBUG00000021935)	fscn2b (ENSHBUG00000021952) ##35	BAHCC1 (ENSHBUG00000021978)	SLC38A10 (ENSHBUG00000022007)	ndufaf8 (ENSHBUG00000021990)	TEPSIN (ENSHBUG00000022018)	AMZ2 (ENSHBUG00000022025)	slc16a6a (ENSHBUG00000022033)	arsg (ENSHBUG00000022043)
Nile tilapia	MODERN SPECIES	20	trrap (ENSONIG00000019810)	nptx2b (ENSONIG00000019818)	tmem130 (ENSONIG00000033434)	baiap2l1a (ENSONIG00000019822)	TECPR1 (ENSONIG00000019824) #8	bhlha15 (ENSONIG00000021203) #9	pvalb3 (ENSONIG00000019825)	pvalb9 (ENSONIG00000019829)	ccz1 (ENSONIG00000019834) #12	rsph10b (ENSONIG00000019835)	PMS2 (ENSONIG00000019836) #14	ENSONIG00000019841	eif2ak1 (ENSONIG00000019839) #18	USP42 (ENSONIG00000019843) #19	CYTH3 (ENSONIG00000019845) #20	RAC1 (ENSONIG00000019847) #22	crym (ENSONIG00000019848)	snu13a (ENSONIG00000019849)	uqcrc2b (ENSONIG00000019851)	ENSONIG00000019855	TMEM235 (ENSONIG00000033142)	birc5a (ENSONIG00000019857)	FAAP100 (ENSONIG00000019858)	fscn2b (ENSONIG00000019860) ##35	BAHCC1 (ENSONIG00000019861)	SLC38A10 (ENSONIG00000019863)	ndufaf8 (ENSONIG00000040245)	TEPSIN (ENSONIG00000019864)	AMZ2 (ENSONIG00000019865)	slc16a6a (ENSONIG00000019866)	arsg (ENSONIG00000019870)
Midas cichlid	MODERN SPECIES	194	TECPR1 (ENSACIG00000002977) #8	bhlha15 (ENSACIG00000002967) #9	ENSACIG00000002950	ENSACIG00000002948	ENSACIG00000002923	pvalb3 (ENSACIG00000002861)	pvalb9 (ENSACIG00000002834)	ccz1 (ENSACIG00000002804) #12	dlgap5 (ENSACIG00000002743)	ENSACIG00000002715	PMS2 (ENSACIG00000002683) #14	ENSACIG00000002671 #17	eif2ak1 (ENSACIG00000002551) #18	USP42 (ENSACIG00000002461) #19	ENSACIG00000002300 #20	RAC1 (ENSACIG00000002280) #22	snu13a (ENSACIG00000002273)	crym (ENSACIG00000002130)	uqcrc2b (ENSACIG00000002090)	ENSACIG00000002083	TMEM235 (ENSACIG00000002069)	birc5a (ENSACIG00000002060)	FAAP100 (ENSACIG00000002042)	fscn2b (ENSACIG00000002025) ##35	BAHCC1 (ENSACIG00000001976)	SLC38A10 (ENSACIG00000001941)	ndufaf8 (ENSACIG00000001906)	TEPSIN (ENSACIG00000001879)	ENSACIG00000001871	AMZ2 (ENSACIG00000001850)	slc16a6a (ENSACIG00000001813)
Percomorphaceae_C	ANCESTRAL SPECIES	14	ENSGT00940000153560.b.b.a.g	ENSGT00510000047886.a.a #8	ENSGT00940000161824 #9	ENSGT00940000165760	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713 #12	ENSGT00940000177934	ENSGT00940000158652	ENSGT00940000168282	ENSGT00940000155381 #14	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825.r #20	ENSGT00940000153500.a.a.w.a #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000011615.A.b	ENSGT00510000047537	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000160116.a	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT01030000234951	ENSGT00530000063996.a	ENSGT00940000155575.i.a	ENSGT00940000159093
Percomorphaceae_D	ANCESTRAL SPECIES	13	ENSGT00940000153560.b.b.a.g	ENSGT00510000047886.a.a #8	ENSGT00940000161824 #9	ENSGT00940000165760	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713 #12	ENSGT00940000177934	ENSGT00940000158652	ENSGT00940000168282	ENSGT00940000155381 #14	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825.r #20	ENSGT00940000153500.a.a.w.a #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000011615.A.b	ENSGT00510000047537	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000160116.a	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT01030000234951	ENSGT00530000063996.a	ENSGT00940000155575.i.a	ENSGT00940000159093
Carangaria	ANCESTRAL SPECIES	13	ENSGT00940000153560.b.b.a.g	ENSGT00510000047886.a.a #8	ENSGT00940000161824 #9	ENSGT00940000165760	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713 #12	ENSGT00940000177934	ENSGT00940000158652	ENSGT00940000168282	ENSGT00940000155381 #14	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825.r #20	ENSGT00940000153500.a.a.w.a #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000011615.A.b	ENSGT00510000047537	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT01030000234951	ENSGT00530000063996.a	ENSGT00940000155575.i.a	ENSGT00940000159093	ENSGT00940000156833.a
Carangaria_A	ANCESTRAL SPECIES	5	ENSGT00940000169563	ENSGT00940000153560.b.b.a.g	ENSGT00510000047886.a.a #8	ENSGT00940000161824 #9	ENSGT00940000165760	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713 #12	ENSGT00940000158652	ENSGT00940000168282	ENSGT00940000155381 #14	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825.r #20	ENSGT00940000153500.a.a.w.a #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000011615.A.b	ENSGT00510000047537	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT01030000234951	ENSGT00530000063996.a	ENSGT00940000155575.i.a	ENSGT00940000159093	ENSGT00940000156833.a
Seriola	ANCESTRAL SPECIES	1	ENSGT00950000183188.A.b	ENSGT00940000153560.b.b.a.g	ENSGT00510000047886.a.a #8	ENSGT00940000161824 #9	ENSGT00940000165760	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713 #12	ENSGT00940000158652	ENSGT00940000168282	ENSGT00940000155381 #14	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825.r #20	ENSGT00940000153500.a.a.w.a #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000011615.A.b	ENSGT00510000047537	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT01030000234951	ENSGT00530000063996.a	ENSGT00940000155575.i.a	ENSGT00940000159093	ENSGT00940000156833.a
Greater amberjack	MODERN SPECIES	27	tmem130 (ENSSDUG00000005365)	baiap2l1a (ENSSDUG00000005346)	TECPR1 (ENSSDUG00000005290) #8	bhlha15 (ENSSDUG00000005276) #9	ENSSDUG00000005252	pvalb3 (ENSSDUG00000005237)	pvalb9 (ENSSDUG00000005181)	ccz1 (ENSSDUG00000005104) #12	dlgap5 (ENSSDUG00000005059)	ENSSDUG00000005043	PMS2 (ENSSDUG00000004982) #14	eif2ak1 (ENSSDUG00000004929) #18	ANKRD61 (ENSSDUG00000004900) #17	USP42 (ENSSDUG00000004870) #19	ENSSDUG00000004838 #20	RAC1 (ENSSDUG00000004816) #22	crym (ENSSDUG00000004782)	ENSSDUG00000004497	snu13a (ENSSDUG00000004460)	uqcrc2b (ENSSDUG00000004407)	ENSSDUG00000004398	TMEM235 (ENSSDUG00000004381)	birc5a (ENSSDUG00000004366)	ENSSDUG00000004347	fscn2b (ENSSDUG00000004334) ##35	SLC38A10 (ENSSDUG00000004297)	ndufaf8 (ENSSDUG00000004258)	ENSSDUG00000004250	TEPSIN (ENSSDUG00000004232)	slc16a6a (ENSSDUG00000004224)	AMZ2 (ENSSDUG00000004210)
Yellowtail amberjack	MODERN SPECIES	3181	tmem130 (ENSSLDG00000004354)	baiap2l1a (ENSSLDG00000004340)	TECPR1 (ENSSLDG00000004237) #8	bhlha15 (ENSSLDG00000004218) #9	ENSSLDG00000004165	pvalb3 (ENSSLDG00000004142)	pvalb9 (ENSSLDG00000004040)	ccz1 (ENSSLDG00000003955) #12	dlgap5 (ENSSLDG00000003913)	ENSSLDG00000003878	PMS2 (ENSSLDG00000003852) #14	eif2ak1 (ENSSLDG00000003824) #18	ANKRD61 (ENSSLDG00000003791) #17	USP42 (ENSSLDG00000003719) #19	ENSSLDG00000003649 #20	RAC1 (ENSSLDG00000003608) #22	crym (ENSSLDG00000003539)	snu13a (ENSSLDG00000003525)	uqcrc2b (ENSSLDG00000002771)	TMEM235 (ENSSLDG00000002655)	birc5a (ENSSLDG00000002616)	ENSSLDG00000002606	fscn2b (ENSSLDG00000002586) ##35	ENSSLDG00000002553	SLC38A10 (ENSSLDG00000002503)	ndufaf8 (ENSSLDG00000002471)	TEPSIN (ENSSLDG00000002419)	ENSSLDG00000002405	AMZ2 (ENSSLDG00000002380)	slc16a6a (ENSSLDG00000002297)	arsg (ENSSLDG00000002245)
Barramundi perch	MODERN SPECIES	479	baiap2l1a (ENSLCAG00010005722)	TECPR1 (ENSLCAG00010005750) #8	bhlha15 (ENSLCAG00010005754) #9	ENSLCAG00010005763	pvalb3 (ENSLCAG00010005771)	pvalb9 (ENSLCAG00010005801)	ccz1 (ENSLCAG00010005822) #12	dlgap5 (ENSLCAG00010005861)	rsph10b (ENSLCAG00010005879)	ENSLCAG00010005887	PMS2 (ENSLCAG00010005945) #14	eif2ak1 (ENSLCAG00010006161) #18	ANKRD61 (ENSLCAG00010006166) #17	USP42 (ENSLCAG00010006170) #19	ENSLCAG00010006416 #20	RAC1 (ENSLCAG00010007032) #22	crym (ENSLCAG00010007154)	snu13a (ENSLCAG00010007175)	uqcrc2b (ENSLCAG00010007254)	ENSLCAG00010007361	TMEM235 (ENSLCAG00010007369)	birc5a (ENSLCAG00010007371)	ENSLCAG00010007374	fscn2b (ENSLCAG00010007381) ##35	ENSLCAG00010007383
Pleuronectoidei	ANCESTRAL SPECIES	6	ENSGT00940000153560.b.b.a.g	ENSGT00510000047886.a.a #8	ENSGT00940000161824 #9	ENSGT00940000163144.b	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713 #12	ENSGT00940000177934	ENSGT00940000158652	ENSGT00940000168282	ENSGT00940000155381 #14	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825.r #20	ENSGT00940000153500.a.a.w.a #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000011615.A.b	ENSGT00510000047537	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT01030000234951	ENSGT00530000063996.a	ENSGT00940000155575.i.a	ENSGT00940000159093	ENSGT00940000156833.a
Turbot	MODERN SPECIES	9	tmem130 (ENSSMAG00000009625)	baiap2l1a (ENSSMAG00000009639)	ENSSMAG00000009663 #8	bhlha15 (ENSSMAG00000009828) #9	ENSSMAG00000009832	pvalb3 (ENSSMAG00000009887)	pvalb9 (ENSSMAG00000009925)	ccz1 (ENSSMAG00000009965) #12	ENSSMAG00000027786	ENSSMAG00000029791	ENSSMAG00000010144 #14	eif2ak1 (ENSSMAG00000010204) #18	ENSSMAG00000010265 #17	USP42 (ENSSMAG00000010288) #19	ENSSMAG00000010331 #20	RAC1 (ENSSMAG00000027813) #22	ENSSMAG00000010395	ENSSMAG00000026051	ENSSMAG00000010431	ENSSMAG00000010472	ENSSMAG00000010484	birc5a (ENSSMAG00000010512)	ENSSMAG00000025839	fscn2b (ENSSMAG00000010537) ##35	SLC38A10 (ENSSMAG00000010625)	ndufaf8 (ENSSMAG00000010791)	TEPSIN (ENSSMAG00000010814)	ENSSMAG00000010825	SLC16A6 (ENSSMAG00000010828)	arsg (ENSSMAG00000010845)	WIPI1 (ENSSMAG00000010861)
Tongue sole	MODERN SPECIES	18	AMZ2 (ENSCSEG00000000440)	slc16a6a (ENSCSEG00000000448)	arsg (ENSCSEG00000000458)	WIPI1 (ENSCSEG00000000473)	prkar1ab (ENSCSEG00000000481)	prkar1ab (ENSCSEG00000000486)	fam20a (ENSCSEG00000000493)	myof (ENSCSEG00000000506)	aarsd1 (ENSCSEG00000000523)	ptges3l (ENSCSEG00000000529)	kat7b (ENSCSEG00000000533)	fscn2b (ENSCSEG00000000537) ##35	ENSCSEG00000000542	birc5a (ENSCSEG00000000545)	TMEM235 (ENSCSEG00000000552)	RAC1 (ENSCSEG00000000557) #22	crym (ENSCSEG00000000567)	snu13a (ENSCSEG00000000574)	uqcrc2b (ENSCSEG00000000592)	nptx2b (ENSCSEG00000000614)	ENSCSEG00000000619	baiap2l1a (ENSCSEG00000000627)	TECPR1 (ENSCSEG00000000648) #8	bhlha15 (ENSCSEG00000000672) #9	ENSCSEG00000000677	ENSCSEG00000000685	pvalb9 (ENSCSEG00000000691)	ccz1 (ENSCSEG00000000694) #12	rsph10b (ENSCSEG00000000706)	PMS2 (ENSCSEG00000000719) #14	eif2ak1 (ENSCSEG00000000740) #18
Anabantaria	ANCESTRAL SPECIES	18	ENSGT00940000169563	ENSGT00940000153560.b.b.a.g	ENSGT00510000047886.a.a #8	ENSGT00940000161824 #9	ENSGT00940000165760	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713 #12	ENSGT00940000158652	ENSGT00940000168282	ENSGT00940000155381 #14	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825.r #20	ENSGT00940000153500.a.a.w.a #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000011615.A.b	ENSGT00510000047537	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000160116.a	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT01030000234951	ENSGT00530000063996.a	ENSGT00940000155575.i.a	ENSGT00940000159093
Zig-zag eel	MODERN SPECIES	10	ENSMAMG00000006561	baiap2l1a (ENSMAMG00000006582)	ENSMAMG00000006599 #8	bhlha15 (ENSMAMG00000006657) #9	ENSMAMG00000006667	pvalb3 (ENSMAMG00000006964)	pvalb9 (ENSMAMG00000006973)	ccz1 (ENSMAMG00000006981) #12	dlgap5 (ENSMAMG00000007044)	rsph10b (ENSMAMG00000007060)	ENSMAMG00000007080 #14	eif2ak1 (ENSMAMG00000007170) #18	ENSMAMG00000024815 #17	USP42 (ENSMAMG00000007227) #19	ENSMAMG00000007309 #20	RAC1 (ENSMAMG00000025590) #22	ENSMAMG00000027468	ENSMAMG00000007380	ENSMAMG00000007388	ENSMAMG00000007407	ENSMAMG00000007419	birc5a (ENSMAMG00000007454)	FAAP100 (ENSMAMG00000007467)	fscn2b (ENSMAMG00000007497) ##35	BAHCC1 (ENSMAMG00000007510)	SLC38A10 (ENSMAMG00000007565)	ndufaf8 (ENSMAMG00000007597)	TEPSIN (ENSMAMG00000007622)	ENSMAMG00000027537	ENSMAMG00000007650	SLC16A6 (ENSMAMG00000007661)
Anabantoidei	ANCESTRAL SPECIES	10	ENSGT01060000248591.a.a.a.a.a	ENSGT00940000169563	ENSGT00940000153560.b.b.a.g	ENSGT00510000047886.a.a #8	ENSGT00940000161824 #9	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713 #12	ENSGT00940000158652	ENSGT00940000168282	ENSGT00940000155381 #14	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825.r #20	ENSGT00940000153500.a.a.w.a #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000011615.A.b	ENSGT00510000047537	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000160116.a	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT01030000234951	ENSGT00530000063996.a	ENSGT00940000155575.i.a	ENSGT00940000159093
Siamese fighting fish	MODERN SPECIES	9	trrap (ENSBSLG00000022902)	nptx2b (ENSBSLG00000022517)	ENSBSLG00000022510	baiap2l1a (ENSBSLG00000022471)	TECPR1 (ENSBSLG00000022366) #8	bhlha15 (ENSBSLG00000022326) #9	pvalb3 (ENSBSLG00000022268)	pvalb9 (ENSBSLG00000022264)	ccz1 (ENSBSLG00000022192) #12	dlgap5 (ENSBSLG00000022178)	rsph10b (ENSBSLG00000022143)	PMS2 (ENSBSLG00000021641) #14	eif2ak1 (ENSBSLG00000021618) #18	USP42 (ENSBSLG00000021470) #19	ENSBSLG00000021163 #20	RAC1 (ENSBSLG00000020586) #22	crym (ENSBSLG00000020582)	snu13a (ENSBSLG00000020577)	uqcrc2b (ENSBSLG00000020061)	birc5a (ENSBSLG00000020032)	ENSBSLG00000020005	ENSBSLG00000019999	ENSBSLG00000019998	ca10a (ENSBSLG00000019916)	ENSBSLG00000019902	ENSBSLG00000019849	mrpl27 (ENSBSLG00000019817)	RAB37 (ENSBSLG00000019781)	ENSBSLG00000019766	ENSBSLG00000019451	ENSBSLG00000019413
Climbing perch	MODERN SPECIES	10	nptx2b (ENSATEG00000012347)	ENSATEG00000012428	baiap2l1a (ENSATEG00000012469)	ENSATEG00000012871 #8	ENSATEG00000012981	pvalb3 (ENSATEG00000012999)	pvalb9 (ENSATEG00000013006)	ccz1 (ENSATEG00000013014) #12	dlgap5 (ENSATEG00000013083)	ENSATEG00000013164 #14	ENSATEG00000013111	eif2ak1 (ENSATEG00000013185) #18	ENSATEG00000027415 #17	USP42 (ENSATEG00000013239) #19	ENSATEG00000027880 #20	RAC1 (ENSATEG00000026009) #22	ENSATEG00000013423	ENSATEG00000013451	ENSATEG00000013466	ENSATEG00000013520	ENSATEG00000013535	birc5a (ENSATEG00000013549)	FAAP100 (ENSATEG00000013559)	fscn2b (ENSATEG00000013607) ##35	BAHCC1 (ENSATEG00000013646)	SLC38A10 (ENSATEG00000013791)	TEPSIN (ENSATEG00000013923)	ENSATEG00000013935	AMZ2 (ENSATEG00000028806)	SLC16A6 (ENSATEG00000013972)	arsg (ENSATEG00000013979)
Eupercaria	ANCESTRAL SPECIES	10	ENSGT00950000183188.A.b	ENSGT00940000153560.b.b.a.g	ENSGT00510000047886.a.a #8	ENSGT00940000161824 #9	ENSGT00940000165760	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713 #12	ENSGT00940000158652	ENSGT00940000168282	ENSGT00940000155381 #14	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825.r #20	ENSGT00940000153500.a.a.w.a #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000011615.A.b	ENSGT00510000047537	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000160116.a	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT01030000234951	ENSGT00530000063996.a	ENSGT00940000155575.i.a	ENSGT00940000159093
Tetraodontidae	ANCESTRAL SPECIES		ENSGT00940000169563	ENSGT00940000153560.b.b.a.g	ENSGT00510000047886.a.a #8	ENSGT00940000161824 #9	ENSGT00940000165760	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713 #12	ENSGT00940000158652	ENSGT00940000168282	ENSGT00940000155381 #14	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825.r #20	ENSGT00940000153500.a.a.w.a #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000018266	ENSGT00390000011615.A.b	ENSGT00510000047537	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000160116.a	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT00530000063996.a	ENSGT00940000155575.i.a	ENSGT00940000159093
Fugu	MODERN SPECIES		nptx2b (ENSTRUG00000016838)	ENSTRUG00000021481	baiap2l1a (ENSTRUG00000016828)	TECPR1 (ENSTRUG00000016816) #8	bhlha15 (ENSTRUG00000016815) #9	ENSTRUG00000021587	pvalb3 (ENSTRUG00000016813)	pvalb9 (ENSTRUG00000022726)	ccz1 (ENSTRUG00000016803) #12	dlgap5 (ENSTRUG00000016800)	PMS2 (ENSTRUG00000016791) #14	eif2ak1 (ENSTRUG00000016782) #18	ENSTRUG00000027343 #17	USP42 (ENSTRUG00000016779) #19	ENSTRUG00000016768 #20	RAC1 (ENSTRUG00000016765) #22	crym (ENSTRUG00000016760)	snu13a (ENSTRUG00000016758)	uqcrc2b (ENSTRUG00000016755)	ENSTRUG00000016752	ENSTRUG00000016751	birc5a (ENSTRUG00000016745)	FAAP100 (ENSTRUG00000016744)	fscn2b (ENSTRUG00000016738) ##35	BAHCC1 (ENSTRUG00000016726)	SLC38A10 (ENSTRUG00000016720)	ndufaf8 (ENSTRUG00000023628)	TEPSIN (ENSTRUG00000016718)	AMZ2 (ENSTRUG00000020865)	slc16a6a (ENSTRUG00000024041)	arsg (ENSTRUG00000016680)
Tetraodon	MODERN SPECIES	13	TECPR1 (ENSTNIG00000012888) #8	bhlha15 (ENSTNIG00000012887) #9	ENSTNIG00000012886	pvalb3 (ENSTNIG00000012885)	pvalb9 (ENSTNIG00000000256)	ccz1 (ENSTNIG00000012884) #12	dlgap5 (ENSTNIG00000012883)	ENSTNIG00000012882	ENSTNIG00000012881	PMS2 (ENSTNIG00000012880) #14	eif2ak1 (ENSTNIG00000012879) #18	ENSTNIG00000000515 #17	USP42 (ENSTNIG00000012878) #19	ENSTNIG00000012877 #19	ENSTNIG00000012876 #20	RAC1 (ENSTNIG00000012875) #22	crym (ENSTNIG00000012874)	snu13a (ENSTNIG00000012873)	uqcrc2b (ENSTNIG00000012872)	TMEM235 (ENSTNIG00000012871)	birc5a (ENSTNIG00000012870)	fscn2b (ENSTNIG00000012869) ##35	BAHCC1 (ENSTNIG00000012868)	ENSTNIG00000012867	TEPSIN (ENSTNIG00000001700)	AMZ2 (ENSTNIG00000012866)	slc16a6a (ENSTNIG00000012865)	arsg (ENSTNIG00000012864)	WIPI1 (ENSTNIG00000012863)	prkar1ab (ENSTNIG00000012862)	fam20a (ENSTNIG00000012861)
Eupecaria_A	ANCESTRAL SPECIES	1	ENSGT00950000183188.A.b	ENSGT00940000153560.b.b.a.g	ENSGT00510000047886.a.a #8	ENSGT00940000161824 #9	ENSGT00940000165760	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713 #12	ENSGT00940000158652	ENSGT00940000168282	ENSGT00940000155381 #14	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00940000155825.r #20	ENSGT00940000153500.a.a.w.a #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000011615.A.b	ENSGT00510000047537	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000160116.a	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT01030000234951	ENSGT00530000063996.a	ENSGT00940000155575.i.a	ENSGT00940000159093
Eupecaria_B	ANCESTRAL SPECIES	3	ENSGT00950000183188.A.b	ENSGT00940000153560.b.b.a.g	ENSGT00510000047886.a.a #8	ENSGT00940000161824 #9	ENSGT00940000165760	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713 #12	ENSGT00940000158652	ENSGT00940000168282	ENSGT00940000155381 #14	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825.r #20	ENSGT00940000153500.a.a.w.a #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000011615.A.b	ENSGT00510000047537	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000160116.a	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT01030000234951	ENSGT00530000063996.a	ENSGT00940000155575.i.a	ENSGT00940000159093
Perciformes	ANCESTRAL SPECIES	9	ENSGT00940000169563	ENSGT00940000153560.b.b.a.g	ENSGT00510000047886.a.a #8	ENSGT00940000161824 #9	ENSGT00940000165760	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713 #12	ENSGT00940000158652	ENSGT00940000168282	ENSGT00940000155381 #14	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00940000155825.r #20	ENSGT00940000153500.a.a.w.a #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000011615.A.b	ENSGT00510000047537	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000178709	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT01030000234951	ENSGT00530000063996.a	ENSGT00940000155575.i.a	ENSGT00940000159093
Perciformes_a	ANCESTRAL SPECIES	8	ENSGT01060000248591.a.a.a.a.a	ENSGT00940000169563	ENSGT00940000153560.b.b.a.g	ENSGT00510000047886.a.a #8	ENSGT00940000161824 #9	ENSGT00940000165760	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713 #12	ENSGT00940000158652	ENSGT00940000168282	ENSGT00940000155381 #14	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000155825.r #20	ENSGT00940000153500.a.a.w.a #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000011615.A.b	ENSGT00510000047537	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000178709	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT01030000234951	ENSGT00530000063996.a	ENSGT00940000155575.i.a	ENSGT00940000159093
Pike perch	MODERN SPECIES	89	nptx2b (ENSSLUG00000012973)	ENSSLUG00000012968	baiap2l1a (ENSSLUG00000012906)	TECPR1 (ENSSLUG00000012875) #8	bhlha15 (ENSSLUG00000012865) #9	ENSSLUG00000012860	pvalb3 (ENSSLUG00000012853)	pvalb9 (ENSSLUG00000012805)	ccz1 (ENSSLUG00000012769) #12	dlgap5 (ENSSLUG00000022501)	rsph10b (ENSSLUG00000022481)	PMS2 (ENSSLUG00000022380) #14	ANKRD61 (ENSSLUG00000022337) #17	eif2ak1 (ENSSLUG00000022295) #18	ENSSLUG00000022088 #20	ENSSLUG00000022003 #22	crym (ENSSLUG00000021990)	snu13a (ENSSLUG00000021977)	uqcrc2b (ENSSLUG00000021531)	ENSSLUG00000021500	TMEM235 (ENSSLUG00000021494)	birc5a (ENSSLUG00000021488)	FAAP100 (ENSSLUG00000021484)	fscn2b (ENSSLUG00000021481) ##35	SLC38A10 (ENSSLUG00000021416)	ndufaf8 (ENSSLUG00000021383)	TEPSIN (ENSSLUG00000021377)	ENSSLUG00000021373	ENSSLUG00000021364	slc16a6a (ENSSLUG00000021360)	arsg (ENSSLUG00000021352)
Channel bull blenny	MODERN SPECIES	10	baiap2l1a (ENSCGOG00000005467)	TECPR1 (ENSCGOG00000005450) #8	ENSCGOG00000005446	bhlha15 (ENSCGOG00000005442) #9	ENSCGOG00000005439	pvalb3 (ENSCGOG00000005338)	pvalb9 (ENSCGOG00000004995)	ccz1 (ENSCGOG00000004201) #12	dlgap5 (ENSCGOG00000004153)	rsph10b (ENSCGOG00000004135)	PMS2 (ENSCGOG00000004084) #14	ENSCGOG00000004055 #17	eif2ak1 (ENSCGOG00000004046) #18	ENSCGOG00000003958	ENSCGOG00000003685 #20	RAC1 (ENSCGOG00000003366) #22	crym (ENSCGOG00000003339)	snu13a (ENSCGOG00000003328)	uqcrc2b (ENSCGOG00000002437)	ENSCGOG00000002400	ENSCGOG00000002384	TMEM235 (ENSCGOG00000002381)	birc5a (ENSCGOG00000002378)	FAAP100 (ENSCGOG00000002373)	fscn2b (ENSCGOG00000016166) ##35	ENSCGOG00000016164	SLC38A10 (ENSCGOG00000016084)	ndufaf8 (ENSCGOG00000016076)	ENSCGOG00000016074	TEPSIN (ENSCGOG00000016067)	ENSCGOG00000016060
Eupecaria_C	ANCESTRAL SPECIES	1	ENSGT00950000183188.A.b	ENSGT00940000153560.b.b.a.g	ENSGT00510000047886.a.a #8	ENSGT00940000161824 #9	ENSGT00940000165760	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713 #12	ENSGT00940000158652	ENSGT00940000168282	ENSGT00940000155381 #14	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825.r #20	ENSGT00940000153500.a.a.w.a #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000011615.A.b	ENSGT00510000047537	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000160116.a	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT01030000234951	ENSGT00530000063996.a	ENSGT00940000155575.i.a	ENSGT00940000159093
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	1	ENSGT00950000183188.A.b	ENSGT00940000153560.b.b.a.g	ENSGT00510000047886.a.a #8	ENSGT00940000161824 #9	ENSGT00940000165760	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713 #12	ENSGT00940000158652	ENSGT00940000168282	ENSGT00940000155381 #14	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00940000155825.r #20	ENSGT00940000153500.a.a.w.a #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000011615.A.b	ENSGT00510000047537	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000160116.a	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT01030000234951	ENSGT00530000063996.a	ENSGT00940000155575.i.a	ENSGT00940000159093
European seabass	MODERN SPECIES	11	tomm22 (ENSDLAG00005034989)	tmem184ba (ENSDLAG00005012385)	csnk1e (ENSDLAG00005012475)	ENSDLAG00005012649	ENSDLAG00005012656	ENSDLAG00005027164	ENSDLAG00005012696	pdap1a (ENSDLAG00005033329)	pvalb9 (ENSDLAG00005012897)	ccz1 (ENSDLAG00005012910) #12	dlgap5 (ENSDLAG00005013070)	ENSDLAG00005013237 #14	eif2ak1 (ENSDLAG00005032224) #18	ENSDLAG00005013803 #17	ENSDLAG00005013842 #20	ENSDLAG00005030314 #22	ENSDLAG00005014350	ENSDLAG00005014442	ENSDLAG00005014396	ENSDLAG00005015224	birc5a (ENSDLAG00005031644)	FAAP100 (ENSDLAG00005015235)	fscn2b (ENSDLAG00005015245) ##35	BAHCC1 (ENSDLAG00005030585)	SLC38A10 (ENSDLAG00005015272)	ndufaf8 (ENSDLAG00005016857)	TEPSIN (ENSDLAG00005016882)	ENSDLAG00005016914	SLC16A6 (ENSDLAG00005016962)	ARSG (ENSDLAG00005016974)	WIPI1 (ENSDLAG00005017031)
Large yellow croaker	MODERN SPECIES	488	nptx2b (ENSLCRG00005002206)	tmem130 (ENSLCRG00005002204)	baiap2l1a (ENSLCRG00005001998)	TECPR1 (ENSLCRG00005001959) #8	bhlha15 (ENSLCRG00005001950) #9	ENSLCRG00005001941	pvalb9 (ENSLCRG00005001935)	ccz1 (ENSLCRG00005001851) #12	dlgap5 (ENSLCRG00005001777)	rsph10b (ENSLCRG00005001746)	PMS2 (ENSLCRG00005001401) #14	ANKRD61 (ENSLCRG00005001386) #17	eif2ak1 (ENSLCRG00005001378) #18	USP42 (ENSLCRG00005001375) #19	ENSLCRG00005000906 #20	RAC1 (ENSLCRG00005000828) #22	pvalb3 (ENSLCRG00005000804)	crym (ENSLCRG00005020406)	snu13a (ENSLCRG00005020393)	ENSLCRG00005020180	ENSLCRG00005020176	TMEM235 (ENSLCRG00005020175)	birc5a (ENSLCRG00005020173)	ENSLCRG00005020172	fscn2b (ENSLCRG00005020171) ##35	ENSLCRG00005020170	SLC38A10 (ENSLCRG00005020161)	ndufaf8 (ENSLCRG00005020157)	TEPSIN (ENSLCRG00005020155)	ENSLCRG00005020150	AMZ2 (ENSLCRG00005020149)
Gilthead seabream	MODERN SPECIES	12	tmem130 (ENSSAUG00010013903)	baiap2l1a (ENSSAUG00010013912)	TECPR1 (ENSSAUG00010013939) #8	bhlha15 (ENSSAUG00010014010) #9	ENSSAUG00010014014	pvalb3 (ENSSAUG00010014016)	pvalb9 (ENSSAUG00010014025)	ccz1 (ENSSAUG00010014059) #12	dlgap5 (ENSSAUG00010014312)	rsph10b (ENSSAUG00010014314)	PMS2 (ENSSAUG00010014319) #14	eif2ak1 (ENSSAUG00010014423) #18	ANKRD61 (ENSSAUG00010014427) #17	USP42 (ENSSAUG00010014434) #19	ENSSAUG00010014666 #20	RAC1 (ENSSAUG00010017707) #22	crym (ENSSAUG00010017713)	snu13a (ENSSAUG00010002770)	uqcrc2b (ENSSAUG00010002780)	ENSSAUG00010002934	TMEM235 (ENSSAUG00010002936)	birc5a (ENSSAUG00010002939)	ENSSAUG00010002945	fscn2b (ENSSAUG00010002961) ##35	BAHCC1 (ENSSAUG00010002966)	SLC38A10 (ENSSAUG00010002984)	TEPSIN (ENSSAUG00010003034)	ENSSAUG00010003044	AMZ2 (ENSSAUG00010003050)	slc16a6a (ENSSAUG00010003103)	arsg (ENSSAUG00010003106)
Ballan wrasse	MODERN SPECIES	299			TECPR1 (ENSLBEG00000010167) #8	bhlha15 (ENSLBEG00000010134) #9	ENSLBEG00000010105	pvalb3 (ENSLBEG00000010062)	pvalb9 (ENSLBEG00000010020)	ccz1 (ENSLBEG00000009907) #12	ENSLBEG00000009861	ENSLBEG00000009836	PMS2 (ENSLBEG00000009797) #14	ENSLBEG00000009764 #17	eif2ak1 (ENSLBEG00000009719) #18	ENSLBEG00000009667 #19	ENSLBEG00000009635 #20	RAC1 (ENSLBEG00000009592) #22	crym (ENSLBEG00000009571)	snu13a (ENSLBEG00000009562)	uqcrc2b (ENSLBEG00000009461)	ENSLBEG00000009405	TMEM235 (ENSLBEG00000009361)	birc5a (ENSLBEG00000009341)	ENSLBEG00000009311	fscn2b (ENSLBEG00000009281) ##35	ENSLBEG00000009263	ndufaf8 (ENSLBEG00000009237)	SLC38A10 (ENSLBEG00000009144)	ENSLBEG00000009066	ENSLBEG00000009033	AMZ2 (ENSLBEG00000008989)	slc16a6a (ENSLBEG00000008966)
Tiger tail seahorse	MODERN SPECIES	36	tbcc (ENSHCOG00000015374)	ENSHCOG00000015366	ENSHCOG00000015359	gna13a (ENSHCOG00000000651)	rgs9b (ENSHCOG00000015261)	ENSHCOG00000015036	pvalb9 (ENSHCOG00000014173)	ccz1 (ENSHCOG00000014094) #12	dlgap5 (ENSHCOG00000014047)	ENSHCOG00000014034	PMS2 (ENSHCOG00000014024) #14	eif2ak1 (ENSHCOG00000014006) #18	ENSHCOG00000013978 #19	ENSHCOG00000013968 #19	CYTH3 (ENSHCOG00000013957) #20	RAC1 (ENSHCOG00000013929) #22	crym (ENSHCOG00000013909)	snu13a (ENSHCOG00000013902)	uqcrc2b (ENSHCOG00000013896)	ENSHCOG00000013861	birc5a (ENSHCOG00000013853)	ENSHCOG00000013848	fscn2b (ENSHCOG00000013843) ##35	SLC38A10 (ENSHCOG00000013825)	ndufaf8 (ENSHCOG00000013800)	TEPSIN (ENSHCOG00000013755)	ENSHCOG00000013725	slc16a6a (ENSHCOG00000013717)	arsg (ENSHCOG00000013709)	WIPI1 (ENSHCOG00000013693)	prkar1ab (ENSHCOG00000013643)
Cod	MODERN SPECIES	9	tmem130 (ENSGMOG00000035103)	baiap2l1a (ENSGMOG00000003872)	ENSGMOG00000003909 #8	bhlha15 (ENSGMOG00000027898) #9	ENSGMOG00000003990	ENSGMOG00000004064	pvalb9 (ENSGMOG00000004076)	ccz1 (ENSGMOG00000004092) #12	dlgap5 (ENSGMOG00000022812)	rsph10b (ENSGMOG00000004179)	ENSGMOG00000004275 #14	eif2ak1 (ENSGMOG00000004342) #18	ENSGMOG00000004384 #17	USP42 (ENSGMOG00000004392) #19	ENSGMOG00000011917 #20	RAC1 (ENSGMOG00000002652) #22	ENSGMOG00000002670	ENSGMOG00000002685	ENSGMOG00000002698	BAHCC1 (ENSGMOG00000022803)	SLC38A10 (ENSGMOG00000013068)	ndufaf8 (ENSGMOG00000027123)	TEPSIN (ENSGMOG00000013093)	SLC16A6 (ENSGMOG00000029788)	ARSG (ENSGMOG00000013121)	WIPI1 (ENSGMOG00000013132)	prkar1ab (ENSGMOG00000013144)	FAM20A (ENSGMOG00000013155)	ENSGMOG00000013169	ENSGMOG00000013184	ENSGMOG00000013229
Neopterygii	ANCESTRAL SPECIES	37	ENSGT00940000169563	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a	ENSGT00940000158475 #10	ENSGT00940000163144	ENSGT00940000163861	ENSGT00390000004713 #12	ENSGT00940000159899 #13	ENSGT00940000155381 #14	ENSGT00390000015826 #16	ENSGT00840000130004 #17	ENSGT00940000157605 #18	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a.b #24	ENSGT00390000004010.a.b.a.a #24	ENSGT00950000182957.a.a.a	ENSGT00390000014131	ENSGT00390000013648	ENSGT00940000164377	ENSGT00390000018570.a	ENSGT00390000016123	ENSGT00940000157839	ENSGT00940000160393	ENSGT00940000159290	ENSGT00390000018266	ENSGT00940000154915	ENSGT00550000074840
Spotted gar	MODERN SPECIES	651	lmtk2 (ENSLOCG00000008620) #10	ENSLOCG00000008606	ENSLOCG00000008594	ENSLOCG00000008585	ENSLOCG00000008573	ENSLOCG00000008560	pvalb8 (ENSLOCG00000008552)	ccz1 (ENSLOCG00000008536) #12	RSPH10B2 (ENSLOCG00000008517) #13	PMS2 (ENSLOCG00000008495) #14	aimp2 (ENSLOCG00000008482) #16	ANKRD61 (ENSLOCG00000008471) #17	eif2ak1 (ENSLOCG00000008458) #18	USP42 (ENSLOCG00000008435) #19	CYTH3 (ENSLOCG00000008410) #20	rac1a (ENSLOCG00000008397) #22	DAGLB (ENSLOCG00000008384) #23	kdelr2b (ENSLOCG00000008372) #24	OTOA (ENSLOCG00000008360)	ENSLOCG00000008350	mettl9 (ENSLOCG00000008339)	mfsd13al (ENSLOCG00000008315)	CDR2 (ENSLOCG00000008302)	polr3e (ENSLOCG00000008290)	eef2k (ENSLOCG00000008265)	SDR42E2 (ENSLOCG00000008254)	VWA3A (ENSLOCG00000008216)	mosmob (ENSLOCG00000008203)	ENSLOCG00000008193	uqcrc2b (ENSLOCG00000008162)	snu13a (ENSLOCG00000008147)
Osteoglossocephalai	ANCESTRAL SPECIES	24	ENSGT00940000158475 #10	ENSGT00940000167161	ENSGT00940000163144.a.b	ENSGT00940000163144.a.a.b	ENSGT00940000165760	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713 #12	ENSGT00940000168282	ENSGT00940000155381 #14	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000018266	ENSGT00940000159290	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000157839	ENSGT00390000016123	ENSGT00390000018570.a.a.a	ENSGT00390000013648	ENSGT00950000182957.a.a.a	ENSGT00390000004010.a.b.a.a #24	ENSGT00390000004010.a.b.a.b #24	ENSGT00940000156486 #23
Osteoglossiformes	ANCESTRAL SPECIES	7	ENSGT00940000158475.r #10	ENSGT00940000167161	ENSGT00940000163144.a.b	ENSGT00940000163144.a.a.b	ENSGT00940000163861.a	ENSGT00390000015826 #16	ENSGT00940000163861.b	ENSGT00390000004713 #12	ENSGT00940000168282	ENSGT00940000155381 #14	ENSGT00940000157605.k #18	ENSGT00840000130004 #17	ENSGT00940000157605.l #18	ENSGT00940000154596.b #19	ENSGT00940000155825.n #20	ENSGT00940000153500.a.a.w.b #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000018266	ENSGT00940000159290	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000157839	ENSGT00390000016123	ENSGT00390000018570.a.a.a	ENSGT00390000013648	ENSGT00950000182957.a.a.a	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000156486 #23	ENSGT00940000153496.a.b.a
P. kingsleyae	MODERN SPECIES	262										ccz1 (ENSPKIG00000008633) #12	rsph10b (ENSPKIG00000008571)	PMS2 (ENSPKIG00000008483) #14	ENSPKIG00000008458 #18	ENSPKIG00000008385 #19	CYTH3 (ENSPKIG00000008227) #20	rac1a (ENSPKIG00000008126) #22	crym (ENSPKIG00000008078)	snu13b (ENSPKIG00000008062)	MOSMO (ENSPKIG00000008046)	eef2k (ENSPKIG00000007928)	polr3e (ENSPKIG00000007836)	CDR2 (ENSPKIG00000007809)	mettl9 (ENSPKIG00000007788)	ENSPKIG00000007742	kdelr2a (ENSPKIG00000007721) #24	DAGLB (ENSPKIG00000007674) #23	SPAG9 (ENSPKIG00000007388)	tob1b (ENSPKIG00000007266)	WFIKKN2 (ENSPKIG00000007249)	ANKRD40 (ENSPKIG00000007226)	LUC7L3 (ENSPKIG00000007180)
Clupeocephala	ANCESTRAL SPECIES	12	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000170309	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000018266	ENSGT00940000159290	ENSGT00940000160393	ENSGT00940000157839	ENSGT00390000016123	ENSGT00390000018570.a.a.a
Euteleosteomorpha	ANCESTRAL SPECIES	45	ENSGT00940000165760	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713 #12	ENSGT00940000158652	ENSGT00940000168282	ENSGT00940000155381 #14	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825 #20	ENSGT00390000014547	ENSGT00940000155205	ENSGT00940000153500.a.a.w.a #22	ENSGT00980000198850	ENSGT00940000153500.a.a.w.b #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00390000011615.A.b	ENSGT00510000047537	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000160116.a	ENSGT00940000178242	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT00980000198917	ENSGT01030000234951	ENSGT00530000063996.a	ENSGT00940000155575.i.a
Acanthomorphata	ANCESTRAL SPECIES	2	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b	ENSGT00980000202148	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000170309	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000165440	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00940000177735	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473	ENSGT00940000154505.A.d	ENSGT00950000182961.b.d
Euacanthomorphacea	ANCESTRAL SPECIES	5	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b	ENSGT00980000202148	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000170309	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000165440	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00940000177735	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473	ENSGT00940000154505.A.d	ENSGT00950000182961.b.d
Percomorphaceae	ANCESTRAL SPECIES	3	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b	ENSGT00980000202148	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000170309	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000165440	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00940000177735	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473	ENSGT00940000154505.A.d	ENSGT00950000182961.b.d
Tiger tail seahorse	MODERN SPECIES	31									ENSHCOG00000017533	cdip1 (ENSHCOG00000017550)	axin2 (ENSHCOG00000017589)	cep112 (ENSHCOG00000018129)	ENSHCOG00000018202	CYTH3 (ENSHCOG00000018227) #20	SMIM10 (ENSHCOG00000018241)	rac1b (ENSHCOG00000018264) #22	stk19 (ENSHCOG00000018274)	DXO (ENSHCOG00000018279)	ENSHCOG00000018292	ENSHCOG00000018327	DXO (ENSHCOG00000018381)	ENSHCOG00000018417	anks4b (ENSHCOG00000000489)	ENSHCOG00000018431	uqcrc2a (ENSHCOG00000018446)	MOSMO (ENSHCOG00000018459)	SDR42E2 (ENSHCOG00000018475)	ENSHCOG00000018484	mfsd13al (ENSHCOG00000018504)	KDELR2 (ENSHCOG00000018522) #24	KDELR2 (ENSHCOG00000018530) #24
Percomorphaceae_B	ANCESTRAL SPECIES	2	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b	ENSGT00980000202148	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000170309	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000165440	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT00990000205661	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00940000177735	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473	ENSGT00940000154505.A.d
Ovalentaria	ANCESTRAL SPECIES	1	ENSGT00940000160081.c.b	ENSGT00940000160081.d	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000170309	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT00990000205661	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00940000177735	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473	ENSGT00940000154505.A.d
Ovalentaria_B	ANCESTRAL SPECIES		ENSGT00940000158476.b	ENSGT00940000160081.c.b	ENSGT00940000160081.d	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT00990000205661	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00940000177735	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473	ENSGT00940000154505.A.d
Pomacentridae	ANCESTRAL SPECIES	61	ENSGT00940000158476.b	ENSGT00940000160081.c.b	ENSGT00940000160081.d	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT00990000205661	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00940000177735	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473	ENSGT00940000154505.A.d
Pomacentridae_A	ANCESTRAL SPECIES	40	ENSGT00390000001390.a.b	ENSGT00940000158476.b	ENSGT00940000160081.c.b	ENSGT00940000160081.d	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00940000177735	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473	ENSGT00940000154505.A.d
Amphiprion	ANCESTRAL SPECIES	31	ENSGT00390000001390.a.b	ENSGT00940000158476.b	ENSGT00940000160081.c.b	ENSGT00940000160081.d	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00940000177735	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473	ENSGT00940000154505.A.d
Clown anemonefish	MODERN SPECIES	1550	slc25a19 (ENSAOCG00000024241)	ENSAOCG00000024228	mif4gda (ENSAOCG00000024223)	mrps7 (ENSAOCG00000024207)	GGA3 (ENSAOCG00000024175)	NUP85 (ENSAOCG00000024132)	ENSAOCG00000024100	jpt1b (ENSAOCG00000024090)	septin9a (ENSAOCG00000024060)	ENSAOCG00000024015	ENSAOCG00000024010	TNRC6C (ENSAOCG00000023968)	ENSAOCG00000023883	CYTH3 (ENSAOCG00000023768) #20	SMIM10 (ENSAOCG00000023709)	rac1b (ENSAOCG00000001725) #22	stk19 (ENSAOCG00000023699)	DXO (ENSAOCG00000001719)	ENSAOCG00000023685	ENSAOCG00000023669	uqcrc2a (ENSAOCG00000023649)	MOSMO (ENSAOCG00000023631)	SDR42E2 (ENSAOCG00000023625)	CDR2 (ENSAOCG00000023604)	mfsd13al (ENSAOCG00000023595)	ENSAOCG00000023591	KDELR2 (ENSAOCG00000023581) #24
Orange clownfish	MODERN SPECIES	5	cbx8a (ENSAPEG00000011079)	cbx4 (ENSAPEG00000011118)	ENSAPEG00000011123	tbc1d16 (ENSAPEG00000011159)	GAA (ENSAPEG00000011230)	ENSAPEG00000011249	ENSAPEG00000011263	tex2 (ENSAPEG00000011373)	axin2 (ENSAPEG00000011448)	cep112 (ENSAPEG00000011542)	ENSAPEG00000011991	ENSAPEG00000012025	CACNG5 (ENSAPEG00000012121)	CYTH3 (ENSAPEG00000012149) #20	SMIM10 (ENSAPEG00000012188)	rac1b (ENSAPEG00000012194) #22	stk19 (ENSAPEG00000012223)	DXO (ENSAPEG00000012237)	ENSAPEG00000012246	anks4b (ENSAPEG00000012286)	ENSAPEG00000012302	uqcrc2a (ENSAPEG00000012348)	MOSMO (ENSAPEG00000012362)	SDR42E2 (ENSAPEG00000012382)	CDR2 (ENSAPEG00000012486)	mfsd13al (ENSAPEG00000012500)	KDELR2 (ENSAPEG00000012508) #24	ENSAPEG00000012541	ENSAPEG00000012564	GPR139 (ENSAPEG00000012582)	proza (ENSAPEG00000012593)
Spiny chromis	MODERN SPECIES	489															SMIM10L2A (ENSAPOG00000017835)	RAC1 (ENSAPOG00000017877) #22	stk19 (ENSAPOG00000017885)	DXO (ENSAPOG00000017890)	ENSAPOG00000017931	anks4b (ENSAPOG00000017938)	ENSAPOG00000017996	uqcrc2a (ENSAPOG00000018013)	MOSMO (ENSAPOG00000018030)	SDR42E2 (ENSAPOG00000018135)	CDR2 (ENSAPOG00000018145)	mfsd13al (ENSAPOG00000018183)	ENSAPOG00000018209 #24	ENSAPOG00000000792	GPR139 (ENSAPOG00000018221)	proza (ENSAPOG00000018231)	gprc5ba (ENSAPOG00000018236)
Bicolor damselfish	MODERN SPECIES	2174													CYTH3 (ENSSPAG00000009494) #20	ENSSPAG00000009480	SMIM10 (ENSSPAG00000009475)	rac1b (ENSSPAG00000009455) #22	stk19 (ENSSPAG00000009440)	DXO (ENSSPAG00000009427)	ENSSPAG00000009400	anks4b (ENSSPAG00000009389)
Cichlidae	DUPLICATION
Cichlidae	ANCESTRAL SPECIES	16	ENSGT00390000001390.a.b	ENSGT00940000158476.b	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT01080000257376.a.a.b.f.h	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b.a #22	ENSGT00940000153500.a.a.w.b.b.a.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473	ENSGT00940000154505.A.d
Pseudocrenilabrinae	ANCESTRAL SPECIES	1	ENSGT00390000001390.a.b	ENSGT00940000158476.b	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT01080000257376.a.a.b.f.h	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b.a #22	ENSGT00940000153500.a.a.w.b.b.a.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473	ENSGT00940000154505.A.d
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	12	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b.p	ENSGT00940000178444	ENSGT00390000013973.B.g.b.o.a	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT01080000257376.a.a.b.f.h	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b.a #22	ENSGT00940000153500.a.a.w.b.b.a.a #22	ENSGT00940000153500.a.a.w.b.b.a.b.a #22	ENSGT00940000153500.a.a.w.b.b.a.b.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471
Haplochromini	ANCESTRAL SPECIES	12	ENSGT00940000158476.b	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b.p	ENSGT00390000013973.B.g.b.o.a	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT01080000257376.a.a.b.f.h	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b.a #22	ENSGT00940000153500.a.a.w.b.b.a.a #22	ENSGT00940000153500.a.a.w.b.b.a.b.a #22	ENSGT00940000153500.a.a.w.b.b.a.b.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471
Haplochromini_A	ANCESTRAL SPECIES	14	ENSGT00940000158476.b	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b.p	ENSGT00390000013973.B.g.b.o.a	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT01080000257376.a.a.b.f.h	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b.a #22	ENSGT00940000153500.a.a.w.b.b.a.a #22	ENSGT00940000153500.a.a.w.b.b.a.b.a #22	ENSGT00940000153500.a.a.w.b.b.a.b.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471
Haplochromini_B	ANCESTRAL SPECIES	33	ENSGT00940000158476.b	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b.p	ENSGT00390000013973.B.g.b.o.a	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT01080000257376.a.a.b.f.h	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b.a #22	ENSGT00940000153500.a.a.w.b.b.a.b.a #22	ENSGT00940000153500.a.a.w.b.b.a.b.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473
Zebra mbuna	MODERN SPECIES	1107	cbx8a (ENSMZEG00005003067)	cbx4 (ENSMZEG00005003073)	tbc1d16 (ENSMZEG00005003089)	GAA (ENSMZEG00005003163)	ENSMZEG00005003178	ENSMZEG00005003194	ENSMZEG00005003221	tex2 (ENSMZEG00005003323)	axin2 (ENSMZEG00005003401)	cep112 (ENSMZEG00005003456)	ENSMZEG00005003476	CACNG5 (ENSMZEG00005003522)	CYTH3 (ENSMZEG00005003544) #20	ENSMZEG00005003593	SMIM10L2A (ENSMZEG00005003621)	RAC1 (ENSMZEG00005003636) #22	RAC1 (ENSMZEG00005003659) #22	RAC1 (ENSMZEG00005003686) #22	stk19 (ENSMZEG00005003699)	DXO (ENSMZEG00005003714)	ENSMZEG00005003737	anks4b (ENSMZEG00005003779)	ENSMZEG00005003785	uqcrc2a (ENSMZEG00005003799)	ENSMZEG00005003812	SDR42E2 (ENSMZEG00005003838)	ENSMZEG00005003913	mfsd13al (ENSMZEG00005003924)	kdelr2a (ENSMZEG00005003960) #24	ENSMZEG00005003974	GPR139 (ENSMZEG00005004002)
Eastern happy	MODERN SPECIES	16	cbx4 (ENSACLG00000027931)	tbc1d16 (ENSACLG00000027930)	GAA (ENSACLG00000027927)	ENSACLG00000027925	ENSACLG00000027923	ENSACLG00000027922	ENSACLG00000027919	tex2 (ENSACLG00000027908)	axin2 (ENSACLG00000027905)	cep112 (ENSACLG00000027898)	ENSACLG00000027889	CACNG5 (ENSACLG00000027886)	CYTH3 (ENSACLG00000027882) #20	ENSACLG00000027881	SMIM10L2A (ENSACLG00000027880)	RAC1 (ENSACLG00000027879) #22	RAC1 (ENSACLG00000027878) #22	RAC1 (ENSACLG00000027876) #22	stk19 (ENSACLG00000027874)	DXO (ENSACLG00000027873)	ENSACLG00000027869	anks4b (ENSACLG00000027868)	ENSACLG00000027866	uqcrc2a (ENSACLG00000027864)	MOSMO (ENSACLG00000027858)	SDR42E2 (ENSACLG00000027845)	ENSACLG00000027842	mfsd13al (ENSACLG00000027837)	kdelr2a (ENSACLG00000027835) #24	ENSACLG00000027832	GPR139 (ENSACLG00000027831)
P. nyererei	MODERN SPECIES	354	ENSPNYG00000017814	cbx4 (ENSPNYG00000017832)	tbc1d16 (ENSPNYG00000017840)	ENSPNYG00000017866	ENSPNYG00000017896	ENSPNYG00000017917	ENSPNYG00000017929	tex2 (ENSPNYG00000018033)	axin2 (ENSPNYG00000018071)	cep112 (ENSPNYG00000018118)	ENSPNYG00000018180	CACNG5 (ENSPNYG00000018223)	CYTH3 (ENSPNYG00000018250) #20	ENSPNYG00000018299	SMIM10L2A (ENSPNYG00000018362)	RAC1 (ENSPNYG00000018367) #22	RAC1 (ENSPNYG00000018388) #22	RAC1 (ENSPNYG00000018404) #22	RAC1 (ENSPNYG00000018418) #22	stk19 (ENSPNYG00000018446)	DXO (ENSPNYG00000018482)	ENSPNYG00000018496	anks4b (ENSPNYG00000018528)	ENSPNYG00000018548	uqcrc2a (ENSPNYG00000018578)	MOSMO (ENSPNYG00000018589)	SDR42E2 (ENSPNYG00000018624)	ENSPNYG00000018736	mfsd13al (ENSPNYG00000018767)	kdelr2a (ENSPNYG00000018786) #24	ENSPNYG00000018806
Burton s mouthbrooder	MODERN SPECIES	339	cbx8a (ENSHBUG00000012350)	cbx4 (ENSHBUG00000012363)	tbc1d16 (ENSHBUG00000012433)	GAA (ENSHBUG00000012446)	ENSHBUG00000012459	ENSHBUG00000012474	ENSHBUG00000012581	tex2 (ENSHBUG00000012638)	axin2 (ENSHBUG00000012700)	cep112 (ENSHBUG00000012715)	ENSHBUG00000012821	CACNG5 (ENSHBUG00000012864)	CYTH3 (ENSHBUG00000012927) #20	ENSHBUG00000012937	SMIM10L2A (ENSHBUG00000012943)	RAC1 (ENSHBUG00000012947) #22	RAC1 (ENSHBUG00000012972) #22	RAC1 (ENSHBUG00000012978) #22	stk19 (ENSHBUG00000012988)	DXO (ENSHBUG00000012997)	ENSHBUG00000013040	anks4b (ENSHBUG00000013049)	ENSHBUG00000013057	uqcrc2a (ENSHBUG00000013070)	ENSHBUG00000013080	SDR42E2 (ENSHBUG00000013089)	ENSHBUG00000000378	mfsd13al (ENSHBUG00000013126)	kdelr2a (ENSHBUG00000013146) #24	ENSHBUG00000013177	GPR139 (ENSHBUG00000013189)
Lyretail cichlid	MODERN SPECIES	310	tbc1d16 (ENSNBRG00000002360)	ENSNBRG00000002326	ENSNBRG00000002300	ENSNBRG00000002291	ENSNBRG00000002281	ENSNBRG00000002250	ENSNBRG00000002179	tex2 (ENSNBRG00000002111)	axin2 (ENSNBRG00000002065)	cep112 (ENSNBRG00000002013)	ENSNBRG00000001957	CACNG5 (ENSNBRG00000001940)	CYTH3 (ENSNBRG00000001900) #20	ENSNBRG00000001887	SMIM10L2A (ENSNBRG00000001881)	RAC1 (ENSNBRG00000001851) #22	RAC1 (ENSNBRG00000001782) #22	RAC1 (ENSNBRG00000001757) #22	RAC1 (ENSNBRG00000001746) #22	stk19 (ENSNBRG00000001681)	DXO (ENSNBRG00000001675)	ENSNBRG00000001635	anks4b (ENSNBRG00000001620)	ENSNBRG00000001594	uqcrc2a (ENSNBRG00000001068)	MOSMO (ENSNBRG00000001027)	SDR42E2 (ENSNBRG00000000951)	ENSNBRG00000000939	mfsd13al (ENSNBRG00000000902)	kdelr2a (ENSNBRG00000000896) #24	ENSNBRG00000000883
Midas cichlid	MODERN SPECIES	842	ENSACIG00000021421	tbc1d16 (ENSACIG00000021446)	ENSACIG00000021481	GAA (ENSACIG00000021509)	ENSACIG00000021567	ENSACIG00000021580	ENSACIG00000021716	tex2 (ENSACIG00000021763)	axin2 (ENSACIG00000021791)	cep112 (ENSACIG00000021822)	ENSACIG00000021898	CACNG5 (ENSACIG00000021926)	CYTH3 (ENSACIG00000021938) #20	ENSACIG00000021955	SMIM10 (ENSACIG00000021958)	RAC1 (ENSACIG00000021963) #22	RAC1 (ENSACIG00000021972) #22	ENSACIG00000022044	RAC1 (ENSACIG00000022075) #22	RAC1 (ENSACIG00000022662) #22	RAC1 (ENSACIG00000022989) #22	stk19 (ENSACIG00000022997)	DXO (ENSACIG00000023018)	ENSACIG00000023025	anks4b (ENSACIG00000023032)	anks4b (ENSACIG00000023036)	ENSACIG00000023043	uqcrc2a (ENSACIG00000023064)	MOSMO (ENSACIG00000023074)	SDR42E2 (ENSACIG00000023078)	ENSACIG00000023086
Cichlidae	DUPLICATION
Cichlidae	DUPLICATION
Cichlidae	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.w.b.b.a.a #22
Pseudocrenilabrinae	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.w.b.b.a.a #22
Nile tilapia	MODERN SPECIES	16	cbx8a (ENSONIG00000017182)	cbx4 (ENSONIG00000035760)	tbc1d16 (ENSONIG00000017177)	GAA (ENSONIG00000017174)	ENSONIG00000017173	ENSONIG00000033886	ENSONIG00000017169	tex2 (ENSONIG00000017165)	axin2 (ENSONIG00000017163)	cep112 (ENSONIG00000017161)	ENSONIG00000034048	CACNG5 (ENSONIG00000017155)	CYTH3 (ENSONIG00000017152) #20	ENSONIG00000033314	SMIM10L2A (ENSONIG00000039734)	rac1b (ENSONIG00000017149) #22	stk19 (ENSONIG00000017147)	DXO (ENSONIG00000017143)	ENSONIG00000017142	anks4b (ENSONIG00000017141)	ENSONIG00000017140	uqcrc2a (ENSONIG00000017135)	MOSMO (ENSONIG00000017134)	SDR42E2 (ENSONIG00000017131)	ENSONIG00000017129	mfsd13al (ENSONIG00000017127)	kdelr2a (ENSONIG00000017126) #24	ENSONIG00000029582	GPR139 (ENSONIG00000017124)	proza (ENSONIG00000041508)	gprc5b (ENSONIG00000017118)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	12	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b.p	ENSGT00940000178444	ENSGT00390000013973.B.g.b.o.a	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT01080000257376.a.a.b.f.h	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b.a #22	ENSGT00940000153500.a.a.w.b.b.a.a #22	ENSGT00940000153500.a.a.w.b.b.a.b.a #22	ENSGT00940000153500.a.a.w.b.b.a.b.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473
Lyretail cichlid	MODERN SPECIES	310	ENSNBRG00000002326	ENSNBRG00000002300	ENSNBRG00000002291	ENSNBRG00000002281	ENSNBRG00000002250	ENSNBRG00000002179	tex2 (ENSNBRG00000002111)	axin2 (ENSNBRG00000002065)	cep112 (ENSNBRG00000002013)	ENSNBRG00000001957	CACNG5 (ENSNBRG00000001940)	CYTH3 (ENSNBRG00000001900) #20	ENSNBRG00000001887	SMIM10L2A (ENSNBRG00000001881)	RAC1 (ENSNBRG00000001851) #22	RAC1 (ENSNBRG00000001782) #22	RAC1 (ENSNBRG00000001757) #22	RAC1 (ENSNBRG00000001746) #22	stk19 (ENSNBRG00000001681)	DXO (ENSNBRG00000001675)	ENSNBRG00000001635	anks4b (ENSNBRG00000001620)	ENSNBRG00000001594	uqcrc2a (ENSNBRG00000001068)	MOSMO (ENSNBRG00000001027)	SDR42E2 (ENSNBRG00000000951)	ENSNBRG00000000939	mfsd13al (ENSNBRG00000000902)	kdelr2a (ENSNBRG00000000896) #24	ENSNBRG00000000883	GPR139 (ENSNBRG00000000866)
Haplochromini	ANCESTRAL SPECIES	12	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b.p	ENSGT00390000013973.B.g.b.o.a	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT01080000257376.a.a.b.f.h	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b.a #22	ENSGT00940000153500.a.a.w.b.b.a.a #22	ENSGT00940000153500.a.a.w.b.b.a.b.a #22	ENSGT00940000153500.a.a.w.b.b.a.b.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473
Haplochromini_A	ANCESTRAL SPECIES	14	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b.p	ENSGT00390000013973.B.g.b.o.a	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT01080000257376.a.a.b.f.h	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b.a #22	ENSGT00940000153500.a.a.w.b.b.a.a #22	ENSGT00940000153500.a.a.w.b.b.a.b.a #22	ENSGT00940000153500.a.a.w.b.b.a.b.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473
P. nyererei	MODERN SPECIES	354	cbx4 (ENSPNYG00000017832)	tbc1d16 (ENSPNYG00000017840)	ENSPNYG00000017866	ENSPNYG00000017896	ENSPNYG00000017917	ENSPNYG00000017929	tex2 (ENSPNYG00000018033)	axin2 (ENSPNYG00000018071)	cep112 (ENSPNYG00000018118)	ENSPNYG00000018180	CACNG5 (ENSPNYG00000018223)	CYTH3 (ENSPNYG00000018250) #20	ENSPNYG00000018299	SMIM10L2A (ENSPNYG00000018362)	RAC1 (ENSPNYG00000018367) #22	RAC1 (ENSPNYG00000018388) #22	RAC1 (ENSPNYG00000018404) #22	RAC1 (ENSPNYG00000018418) #22	stk19 (ENSPNYG00000018446)	DXO (ENSPNYG00000018482)	ENSPNYG00000018496	anks4b (ENSPNYG00000018528)	ENSPNYG00000018548	uqcrc2a (ENSPNYG00000018578)	MOSMO (ENSPNYG00000018589)	SDR42E2 (ENSPNYG00000018624)	ENSPNYG00000018736	mfsd13al (ENSPNYG00000018767)	kdelr2a (ENSPNYG00000018786) #24	ENSPNYG00000018806	GPR139 (ENSPNYG00000018830)
Midas cichlid	MODERN SPECIES	842	ENSACIG00000021580	ENSACIG00000021716	tex2 (ENSACIG00000021763)	axin2 (ENSACIG00000021791)	cep112 (ENSACIG00000021822)	ENSACIG00000021898	CACNG5 (ENSACIG00000021926)	CYTH3 (ENSACIG00000021938) #20	ENSACIG00000021955	SMIM10 (ENSACIG00000021958)	RAC1 (ENSACIG00000021963) #22	RAC1 (ENSACIG00000021972) #22	ENSACIG00000022044	RAC1 (ENSACIG00000022075) #22	RAC1 (ENSACIG00000022662) #22	RAC1 (ENSACIG00000022989) #22	stk19 (ENSACIG00000022997)	DXO (ENSACIG00000023018)	ENSACIG00000023025	anks4b (ENSACIG00000023032)	anks4b (ENSACIG00000023036)	ENSACIG00000023043	uqcrc2a (ENSACIG00000023064)	MOSMO (ENSACIG00000023074)	SDR42E2 (ENSACIG00000023078)	ENSACIG00000023086	mfsd13al (ENSACIG00000023094)	kdelr2a (ENSACIG00000023099) #24	ENSACIG00000023104	GPR139 (ENSACIG00000023106)	proza (ENSACIG00000023128)
Cichlidae	ANCESTRAL SPECIES	16	ENSGT00940000158476.b	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT01080000257376.a.a.b.f.h	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b.a #22	ENSGT00940000153500.a.a.w.b.b.a.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473	ENSGT00940000154505.A.d	ENSGT00950000182961.b.d
Pseudocrenilabrinae	ANCESTRAL SPECIES	1	ENSGT00940000158476.b	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT01080000257376.a.a.b.f.h	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b.a #22	ENSGT00940000153500.a.a.w.b.b.a.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473	ENSGT00940000154505.A.d	ENSGT00950000182961.b.d
Pseudocrenilabrinae_A	DUPLICATION
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	12	ENSGT00940000159355	ENSGT00390000013973.B.g.b.p	ENSGT00940000178444	ENSGT00390000013973.B.g.b.o.a	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT01080000257376.a.a.b.f.h	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b.a #22	ENSGT00940000153500.a.a.w.b.b.a.a #22	ENSGT00940000153500.a.a.w.b.b.a.b.a #22	ENSGT00940000153500.a.a.w.b.b.a.b.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473	ENSGT00940000154505.A.d
Lyretail cichlid	MODERN SPECIES	310	ENSNBRG00000002300	ENSNBRG00000002291	ENSNBRG00000002281	ENSNBRG00000002250	ENSNBRG00000002179	tex2 (ENSNBRG00000002111)	axin2 (ENSNBRG00000002065)	cep112 (ENSNBRG00000002013)	ENSNBRG00000001957	CACNG5 (ENSNBRG00000001940)	CYTH3 (ENSNBRG00000001900) #20	ENSNBRG00000001887	SMIM10L2A (ENSNBRG00000001881)	RAC1 (ENSNBRG00000001851) #22	RAC1 (ENSNBRG00000001782) #22	RAC1 (ENSNBRG00000001757) #22	RAC1 (ENSNBRG00000001746) #22	stk19 (ENSNBRG00000001681)	DXO (ENSNBRG00000001675)	ENSNBRG00000001635	anks4b (ENSNBRG00000001620)	ENSNBRG00000001594	uqcrc2a (ENSNBRG00000001068)	MOSMO (ENSNBRG00000001027)	SDR42E2 (ENSNBRG00000000951)	ENSNBRG00000000939	mfsd13al (ENSNBRG00000000902)	kdelr2a (ENSNBRG00000000896) #24	ENSNBRG00000000883	GPR139 (ENSNBRG00000000866)	proza (ENSNBRG00000000835)
Haplochromini	ANCESTRAL SPECIES	12	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b.p	ENSGT00390000013973.B.g.b.o.a	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT01080000257376.a.a.b.f.h	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b.a #22	ENSGT00940000153500.a.a.w.b.b.a.a #22	ENSGT00940000153500.a.a.w.b.b.a.b.a #22	ENSGT00940000153500.a.a.w.b.b.a.b.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473	ENSGT00940000154505.A.d
Burton s mouthbrooder	MODERN SPECIES	339	cbx4 (ENSHBUG00000012363)	tbc1d16 (ENSHBUG00000012433)	GAA (ENSHBUG00000012446)	ENSHBUG00000012459	ENSHBUG00000012474	ENSHBUG00000012581	tex2 (ENSHBUG00000012638)	axin2 (ENSHBUG00000012700)	cep112 (ENSHBUG00000012715)	ENSHBUG00000012821	CACNG5 (ENSHBUG00000012864)	CYTH3 (ENSHBUG00000012927) #20	ENSHBUG00000012937	SMIM10L2A (ENSHBUG00000012943)	RAC1 (ENSHBUG00000012947) #22	RAC1 (ENSHBUG00000012972) #22	RAC1 (ENSHBUG00000012978) #22	stk19 (ENSHBUG00000012988)	DXO (ENSHBUG00000012997)	ENSHBUG00000013040	anks4b (ENSHBUG00000013049)	ENSHBUG00000013057	uqcrc2a (ENSHBUG00000013070)	ENSHBUG00000013080	SDR42E2 (ENSHBUG00000013089)	ENSHBUG00000000378	mfsd13al (ENSHBUG00000013126)	kdelr2a (ENSHBUG00000013146) #24	ENSHBUG00000013177	GPR139 (ENSHBUG00000013189)	proza (ENSHBUG00000013224)
Haplochromini_A	ANCESTRAL SPECIES	14	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b.p	ENSGT00390000013973.B.g.b.o.a	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT01080000257376.a.a.b.f.h	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b.a #22	ENSGT00940000153500.a.a.w.b.b.a.a #22	ENSGT00940000153500.a.a.w.b.b.a.b.a #22	ENSGT00940000153500.a.a.w.b.b.a.b.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473	ENSGT00940000154505.A.d
Haplochromini_B	ANCESTRAL SPECIES	33	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b.p	ENSGT00390000013973.B.g.b.o.a	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT01080000257376.a.a.b.f.h	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b.a #22	ENSGT00940000153500.a.a.w.b.b.a.b.a #22	ENSGT00940000153500.a.a.w.b.b.a.b.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473	ENSGT00940000154505.A.d
Eastern happy	MODERN SPECIES	16	tbc1d16 (ENSACLG00000027930)	GAA (ENSACLG00000027927)	ENSACLG00000027925	ENSACLG00000027923	ENSACLG00000027922	ENSACLG00000027919	tex2 (ENSACLG00000027908)	axin2 (ENSACLG00000027905)	cep112 (ENSACLG00000027898)	ENSACLG00000027889	CACNG5 (ENSACLG00000027886)	CYTH3 (ENSACLG00000027882) #20	ENSACLG00000027881	SMIM10L2A (ENSACLG00000027880)	RAC1 (ENSACLG00000027879) #22	RAC1 (ENSACLG00000027878) #22	RAC1 (ENSACLG00000027876) #22	stk19 (ENSACLG00000027874)	DXO (ENSACLG00000027873)	ENSACLG00000027869	anks4b (ENSACLG00000027868)	ENSACLG00000027866	uqcrc2a (ENSACLG00000027864)	MOSMO (ENSACLG00000027858)	SDR42E2 (ENSACLG00000027845)	ENSACLG00000027842	mfsd13al (ENSACLG00000027837)	kdelr2a (ENSACLG00000027835) #24	ENSACLG00000027832	GPR139 (ENSACLG00000027831)	proza (ENSACLG00000027825)
Zebra mbuna	MODERN SPECIES	1107	cbx4 (ENSMZEG00005003073)	tbc1d16 (ENSMZEG00005003089)	GAA (ENSMZEG00005003163)	ENSMZEG00005003178	ENSMZEG00005003194	ENSMZEG00005003221	tex2 (ENSMZEG00005003323)	axin2 (ENSMZEG00005003401)	cep112 (ENSMZEG00005003456)	ENSMZEG00005003476	CACNG5 (ENSMZEG00005003522)	CYTH3 (ENSMZEG00005003544) #20	ENSMZEG00005003593	SMIM10L2A (ENSMZEG00005003621)	RAC1 (ENSMZEG00005003636) #22	RAC1 (ENSMZEG00005003659) #22	RAC1 (ENSMZEG00005003686) #22	stk19 (ENSMZEG00005003699)	DXO (ENSMZEG00005003714)	ENSMZEG00005003737	anks4b (ENSMZEG00005003779)	ENSMZEG00005003785	uqcrc2a (ENSMZEG00005003799)	ENSMZEG00005003812	SDR42E2 (ENSMZEG00005003838)	ENSMZEG00005003913	mfsd13al (ENSMZEG00005003924)	kdelr2a (ENSMZEG00005003960) #24	ENSMZEG00005003974	GPR139 (ENSMZEG00005004002)	proza (ENSMZEG00005004019)
P. nyererei	MODERN SPECIES	354	tbc1d16 (ENSPNYG00000017840)	ENSPNYG00000017866	ENSPNYG00000017896	ENSPNYG00000017917	ENSPNYG00000017929	tex2 (ENSPNYG00000018033)	axin2 (ENSPNYG00000018071)	cep112 (ENSPNYG00000018118)	ENSPNYG00000018180	CACNG5 (ENSPNYG00000018223)	CYTH3 (ENSPNYG00000018250) #20	ENSPNYG00000018299	SMIM10L2A (ENSPNYG00000018362)	RAC1 (ENSPNYG00000018367) #22	RAC1 (ENSPNYG00000018388) #22	RAC1 (ENSPNYG00000018404) #22	RAC1 (ENSPNYG00000018418) #22	stk19 (ENSPNYG00000018446)	DXO (ENSPNYG00000018482)	ENSPNYG00000018496	anks4b (ENSPNYG00000018528)	ENSPNYG00000018548	uqcrc2a (ENSPNYG00000018578)	MOSMO (ENSPNYG00000018589)	SDR42E2 (ENSPNYG00000018624)	ENSPNYG00000018736	mfsd13al (ENSPNYG00000018767)	kdelr2a (ENSPNYG00000018786) #24	ENSPNYG00000018806	GPR139 (ENSPNYG00000018830)	proza (ENSPNYG00000018848)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	12	ENSGT00390000013973.B.g.b.p	ENSGT00940000178444	ENSGT00390000013973.B.g.b.o.a	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT01080000257376.a.a.b.f.h	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b.a #22	ENSGT00940000153500.a.a.w.b.b.a.a #22	ENSGT00940000153500.a.a.w.b.b.a.b.a #22	ENSGT00940000153500.a.a.w.b.b.a.b.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473	ENSGT00940000154505.A.d	ENSGT00950000182961.b.d
Haplochromini	ANCESTRAL SPECIES	12	ENSGT00940000159355	ENSGT00390000013973.B.g.b.p	ENSGT00390000013973.B.g.b.o.a	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT01080000257376.a.a.b.f.h	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b.a #22	ENSGT00940000153500.a.a.w.b.b.a.a #22	ENSGT00940000153500.a.a.w.b.b.a.b.a #22	ENSGT00940000153500.a.a.w.b.b.a.b.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473	ENSGT00940000154505.A.d	ENSGT00950000182961.b.d
Haplochromini_A	ANCESTRAL SPECIES	14	ENSGT00940000159355	ENSGT00390000013973.B.g.b.p	ENSGT00390000013973.B.g.b.o.a	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT01080000257376.a.a.b.f.h	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b.a #22	ENSGT00940000153500.a.a.w.b.b.a.a #22	ENSGT00940000153500.a.a.w.b.b.a.b.a #22	ENSGT00940000153500.a.a.w.b.b.a.b.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473	ENSGT00940000154505.A.d	ENSGT00950000182961.b.d
Haplochromini_B	ANCESTRAL SPECIES	33	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b.p	ENSGT00390000013973.B.g.b.o.a	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT01080000257376.a.a.b.f.h	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b.a #22	ENSGT00940000153500.a.a.w.b.b.a.b.a #22	ENSGT00940000153500.a.a.w.b.b.a.b.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473	ENSGT00940000154505.A.d	ENSGT00950000182961.b.d
Eastern happy	MODERN SPECIES	16	GAA (ENSACLG00000027927)	ENSACLG00000027925	ENSACLG00000027923	ENSACLG00000027922	ENSACLG00000027919	tex2 (ENSACLG00000027908)	axin2 (ENSACLG00000027905)	cep112 (ENSACLG00000027898)	ENSACLG00000027889	CACNG5 (ENSACLG00000027886)	CYTH3 (ENSACLG00000027882) #20	ENSACLG00000027881	SMIM10L2A (ENSACLG00000027880)	RAC1 (ENSACLG00000027879) #22	RAC1 (ENSACLG00000027878) #22	RAC1 (ENSACLG00000027876) #22	stk19 (ENSACLG00000027874)	DXO (ENSACLG00000027873)	ENSACLG00000027869	anks4b (ENSACLG00000027868)	ENSACLG00000027866	uqcrc2a (ENSACLG00000027864)	MOSMO (ENSACLG00000027858)	SDR42E2 (ENSACLG00000027845)	ENSACLG00000027842	mfsd13al (ENSACLG00000027837)	kdelr2a (ENSACLG00000027835) #24	ENSACLG00000027832	GPR139 (ENSACLG00000027831)	proza (ENSACLG00000027825)	gprc5ba (ENSACLG00000027822)
Zebra mbuna	MODERN SPECIES	1107	tbc1d16 (ENSMZEG00005003089)	GAA (ENSMZEG00005003163)	ENSMZEG00005003178	ENSMZEG00005003194	ENSMZEG00005003221	tex2 (ENSMZEG00005003323)	axin2 (ENSMZEG00005003401)	cep112 (ENSMZEG00005003456)	ENSMZEG00005003476	CACNG5 (ENSMZEG00005003522)	CYTH3 (ENSMZEG00005003544) #20	ENSMZEG00005003593	SMIM10L2A (ENSMZEG00005003621)	RAC1 (ENSMZEG00005003636) #22	RAC1 (ENSMZEG00005003659) #22	RAC1 (ENSMZEG00005003686) #22	stk19 (ENSMZEG00005003699)	DXO (ENSMZEG00005003714)	ENSMZEG00005003737	anks4b (ENSMZEG00005003779)	ENSMZEG00005003785	uqcrc2a (ENSMZEG00005003799)	ENSMZEG00005003812	SDR42E2 (ENSMZEG00005003838)	ENSMZEG00005003913	mfsd13al (ENSMZEG00005003924)	kdelr2a (ENSMZEG00005003960) #24	ENSMZEG00005003974	GPR139 (ENSMZEG00005004002)	proza (ENSMZEG00005004019)	gprc5ba (ENSMZEG00005004049)
P. nyererei	MODERN SPECIES	354	ENSPNYG00000017866	ENSPNYG00000017896	ENSPNYG00000017917	ENSPNYG00000017929	tex2 (ENSPNYG00000018033)	axin2 (ENSPNYG00000018071)	cep112 (ENSPNYG00000018118)	ENSPNYG00000018180	CACNG5 (ENSPNYG00000018223)	CYTH3 (ENSPNYG00000018250) #20	ENSPNYG00000018299	SMIM10L2A (ENSPNYG00000018362)	RAC1 (ENSPNYG00000018367) #22	RAC1 (ENSPNYG00000018388) #22	RAC1 (ENSPNYG00000018404) #22	RAC1 (ENSPNYG00000018418) #22	stk19 (ENSPNYG00000018446)	DXO (ENSPNYG00000018482)	ENSPNYG00000018496	anks4b (ENSPNYG00000018528)	ENSPNYG00000018548	uqcrc2a (ENSPNYG00000018578)	MOSMO (ENSPNYG00000018589)	SDR42E2 (ENSPNYG00000018624)	ENSPNYG00000018736	mfsd13al (ENSPNYG00000018767)	kdelr2a (ENSPNYG00000018786) #24	ENSPNYG00000018806	GPR139 (ENSPNYG00000018830)	proza (ENSPNYG00000018848)	gprc5ba (ENSPNYG00000018897)
Burton s mouthbrooder	MODERN SPECIES	339	tbc1d16 (ENSHBUG00000012433)	GAA (ENSHBUG00000012446)	ENSHBUG00000012459	ENSHBUG00000012474	ENSHBUG00000012581	tex2 (ENSHBUG00000012638)	axin2 (ENSHBUG00000012700)	cep112 (ENSHBUG00000012715)	ENSHBUG00000012821	CACNG5 (ENSHBUG00000012864)	CYTH3 (ENSHBUG00000012927) #20	ENSHBUG00000012937	SMIM10L2A (ENSHBUG00000012943)	RAC1 (ENSHBUG00000012947) #22	RAC1 (ENSHBUG00000012972) #22	RAC1 (ENSHBUG00000012978) #22	stk19 (ENSHBUG00000012988)	DXO (ENSHBUG00000012997)	ENSHBUG00000013040	anks4b (ENSHBUG00000013049)	ENSHBUG00000013057	uqcrc2a (ENSHBUG00000013070)	ENSHBUG00000013080	SDR42E2 (ENSHBUG00000013089)	ENSHBUG00000000378	mfsd13al (ENSHBUG00000013126)	kdelr2a (ENSHBUG00000013146) #24	ENSHBUG00000013177	GPR139 (ENSHBUG00000013189)	proza (ENSHBUG00000013224)	gprc5ba (ENSHBUG00000013237)
Lyretail cichlid	MODERN SPECIES	310	ENSNBRG00000002291	ENSNBRG00000002281	ENSNBRG00000002250	ENSNBRG00000002179	tex2 (ENSNBRG00000002111)	axin2 (ENSNBRG00000002065)	cep112 (ENSNBRG00000002013)	ENSNBRG00000001957	CACNG5 (ENSNBRG00000001940)	CYTH3 (ENSNBRG00000001900) #20	ENSNBRG00000001887	SMIM10L2A (ENSNBRG00000001881)	RAC1 (ENSNBRG00000001851) #22	RAC1 (ENSNBRG00000001782) #22	RAC1 (ENSNBRG00000001757) #22	RAC1 (ENSNBRG00000001746) #22	stk19 (ENSNBRG00000001681)	DXO (ENSNBRG00000001675)	ENSNBRG00000001635	anks4b (ENSNBRG00000001620)	ENSNBRG00000001594	uqcrc2a (ENSNBRG00000001068)	MOSMO (ENSNBRG00000001027)	SDR42E2 (ENSNBRG00000000951)	ENSNBRG00000000939	mfsd13al (ENSNBRG00000000902)	kdelr2a (ENSNBRG00000000896) #24	ENSNBRG00000000883	GPR139 (ENSNBRG00000000866)	proza (ENSNBRG00000000835)	gprc5ba (ENSNBRG00000000831)
Midas cichlid	MODERN SPECIES	842	tbc1d16 (ENSACIG00000021446)	ENSACIG00000021481	GAA (ENSACIG00000021509)	ENSACIG00000021567	ENSACIG00000021580	ENSACIG00000021716	tex2 (ENSACIG00000021763)	axin2 (ENSACIG00000021791)	cep112 (ENSACIG00000021822)	ENSACIG00000021898	CACNG5 (ENSACIG00000021926)	CYTH3 (ENSACIG00000021938) #20	ENSACIG00000021955	SMIM10 (ENSACIG00000021958)	RAC1 (ENSACIG00000021963) #22	RAC1 (ENSACIG00000021972) #22	ENSACIG00000022044	RAC1 (ENSACIG00000022075) #22	RAC1 (ENSACIG00000022662) #22	RAC1 (ENSACIG00000022989) #22	stk19 (ENSACIG00000022997)	DXO (ENSACIG00000023018)	ENSACIG00000023025	anks4b (ENSACIG00000023032)	anks4b (ENSACIG00000023036)	ENSACIG00000023043	uqcrc2a (ENSACIG00000023064)	MOSMO (ENSACIG00000023074)	SDR42E2 (ENSACIG00000023078)	ENSACIG00000023086	mfsd13al (ENSACIG00000023094)
Cichlidae	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.w.b.b.b #22
Midas cichlid	DUPLICATION
Midas cichlid	MODERN SPECIES	842	ENSACIG00000021567	ENSACIG00000021580	ENSACIG00000021716	tex2 (ENSACIG00000021763)	axin2 (ENSACIG00000021791)	cep112 (ENSACIG00000021822)	ENSACIG00000021898	CACNG5 (ENSACIG00000021926)	CYTH3 (ENSACIG00000021938) #20	ENSACIG00000021955	SMIM10 (ENSACIG00000021958)	RAC1 (ENSACIG00000021963) #22	RAC1 (ENSACIG00000021972) #22	ENSACIG00000022044	RAC1 (ENSACIG00000022075) #22	RAC1 (ENSACIG00000022662) #22	RAC1 (ENSACIG00000022989) #22	stk19 (ENSACIG00000022997)	DXO (ENSACIG00000023018)	ENSACIG00000023025	anks4b (ENSACIG00000023032)	anks4b (ENSACIG00000023036)	ENSACIG00000023043	uqcrc2a (ENSACIG00000023064)	MOSMO (ENSACIG00000023074)	SDR42E2 (ENSACIG00000023078)	ENSACIG00000023086	mfsd13al (ENSACIG00000023094)	kdelr2a (ENSACIG00000023099) #24	ENSACIG00000023104	GPR139 (ENSACIG00000023106)
Midas cichlid	MODERN SPECIES	842	GAA (ENSACIG00000021509)	ENSACIG00000021567	ENSACIG00000021580	ENSACIG00000021716	tex2 (ENSACIG00000021763)	axin2 (ENSACIG00000021791)	cep112 (ENSACIG00000021822)	ENSACIG00000021898	CACNG5 (ENSACIG00000021926)	CYTH3 (ENSACIG00000021938) #20	ENSACIG00000021955	SMIM10 (ENSACIG00000021958)	RAC1 (ENSACIG00000021963) #22	RAC1 (ENSACIG00000021972) #22	ENSACIG00000022044	RAC1 (ENSACIG00000022075) #22	RAC1 (ENSACIG00000022662) #22	RAC1 (ENSACIG00000022989) #22	stk19 (ENSACIG00000022997)	DXO (ENSACIG00000023018)	ENSACIG00000023025	anks4b (ENSACIG00000023032)	anks4b (ENSACIG00000023036)	ENSACIG00000023043	uqcrc2a (ENSACIG00000023064)	MOSMO (ENSACIG00000023074)	SDR42E2 (ENSACIG00000023078)	ENSACIG00000023086	mfsd13al (ENSACIG00000023094)	kdelr2a (ENSACIG00000023099) #24	ENSACIG00000023104
Atherinomorphae	ANCESTRAL SPECIES	6	ENSGT00940000158476.b	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000170309	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT00990000205661	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00940000177735	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473	ENSGT00940000154505.A.d
Oryzias	DUPLICATION
Oryzias	ANCESTRAL SPECIES		ENSGT00940000157690	ENSGT00940000156201.a.b	ENSGT00390000001390.a.b	ENSGT00940000158476.b	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b.c #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473	ENSGT00940000154505.A.d	ENSGT00950000182961.b.d
Oryzias_a	ANCESTRAL SPECIES	10	ENSGT00940000157690	ENSGT00940000156201.a.b	ENSGT00390000001390.a.b	ENSGT00940000158476.b	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b.c #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473	ENSGT00940000154505.A.d	ENSGT00950000182961.b.d
Japanese Medaka HdrR	MODERN SPECIES	22	arhgap17b (ENSORLG00000009090)	ENSORLG00000009015	cbx8a (ENSORLG00000009002)	cbx4 (ENSORLG00000008992)	tbc1d16 (ENSORLG00000008981)	GAA (ENSORLG00000008970)	ern1 (ENSORLG00000008940)	tex2 (ENSORLG00000008910)	axin2 (ENSORLG00000008893)	cep112 (ENSORLG00000008862)	ENSORLG00000008825	ENSORLG00000025546	ENSORLG00000029283	CYTH3 (ENSORLG00000008792) #20	SMIM10 (ENSORLG00000023787)	rac1b (ENSORLG00000024978) #22	stk19 (ENSORLG00000008750)	DXO (ENSORLG00000008743)	ENSORLG00000008722	anks4b (ENSORLG00000008704)	ENSORLG00000008699	ENSORLG00000008672	MOSMO (ENSORLG00000008643)	SDR42E2 (ENSORLG00000008637)	ENSORLG00000008623	mfsd13al (ENSORLG00000008607)	KDELR2 (ENSORLG00000008597) #24	ENSORLG00000027120	GPR139 (ENSORLG00000030441)	proza (ENSORLG00000008569)	gprc5ba (ENSORLG00000008538)
Chinese medaka	MODERN SPECIES	666															SMIM10 (ENSOSIG00000003782)	ENSOSIG00000022832 #22	stk19 (ENSOSIG00000022830)	DXO (ENSOSIG00000022826)	MOSMO (ENSOSIG00000022825)
Oryzias_b	ANCESTRAL SPECIES	11	ENSGT00940000157690	ENSGT00940000156201.a.b	ENSGT00390000001390.a.b	ENSGT00940000158476.b	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b.c #22	ENSGT00940000153500.a.a.w.b.d #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473	ENSGT00940000154505.A.d
Javanese ricefish	MODERN SPECIES	22	GRID2IP (ENSOJAG00000011735) ##25	slc5a11 (ENSOJAG00000011959)	arhgap17b (ENSOJAG00000012078)	ENSOJAG00000012599	cbx8a (ENSOJAG00000012613)	cbx4 (ENSOJAG00000012620)	tbc1d16 (ENSOJAG00000012642)	ENSOJAG00000012997	tex2 (ENSOJAG00000013734)	axin2 (ENSOJAG00000014159)	cep112 (ENSOJAG00000014173)	ENSOJAG00000014248	CACNG5 (ENSOJAG00000014959)	CYTH3 (ENSOJAG00000015068) #20	SMIM10 (ENSOJAG00000016089)	RAC1 (ENSOJAG00000016097) #22	RAC1 (ENSOJAG00000016242) #22	stk19 (ENSOJAG00000016254)	DXO (ENSOJAG00000016265)	ENSOJAG00000016277	anks4b (ENSOJAG00000016367)	ENSOJAG00000016373	uqcrc2a (ENSOJAG00000016465)	MOSMO (ENSOJAG00000017168)	SDR42E2 (ENSOJAG00000017179)	ENSOJAG00000017199	mfsd13al (ENSOJAG00000017209)	kdelr2a (ENSOJAG00000017229) #24	ENSOJAG00000000070	GPR139 (ENSOJAG00000000085)	proza (ENSOJAG00000000126)
Oryzias	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.w.b.d #22
Oryzias_a	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a.w.b.d #22
Chinese medaka	MODERN SPECIES	4957																RAC1 (ENSOSIG00000001894) #22
Oryzias_b	ANCESTRAL SPECIES	11	ENSGT00940000156201.a.b	ENSGT00390000001390.a.b	ENSGT00940000158476.b	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b.c #22	ENSGT00940000153500.a.a.w.b.d #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473	ENSGT00940000154505.A.d	ENSGT00950000182961.b.d
Javanese ricefish	MODERN SPECIES	22	slc5a11 (ENSOJAG00000011959)	arhgap17b (ENSOJAG00000012078)	ENSOJAG00000012599	cbx8a (ENSOJAG00000012613)	cbx4 (ENSOJAG00000012620)	tbc1d16 (ENSOJAG00000012642)	ENSOJAG00000012997	tex2 (ENSOJAG00000013734)	axin2 (ENSOJAG00000014159)	cep112 (ENSOJAG00000014173)	ENSOJAG00000014248	CACNG5 (ENSOJAG00000014959)	CYTH3 (ENSOJAG00000015068) #20	SMIM10 (ENSOJAG00000016089)	RAC1 (ENSOJAG00000016097) #22	RAC1 (ENSOJAG00000016242) #22	stk19 (ENSOJAG00000016254)	DXO (ENSOJAG00000016265)	ENSOJAG00000016277	anks4b (ENSOJAG00000016367)	ENSOJAG00000016373	uqcrc2a (ENSOJAG00000016465)	MOSMO (ENSOJAG00000017168)	SDR42E2 (ENSOJAG00000017179)	ENSOJAG00000017199	mfsd13al (ENSOJAG00000017209)	kdelr2a (ENSOJAG00000017229) #24	ENSOJAG00000000070	GPR139 (ENSOJAG00000000085)	proza (ENSOJAG00000000126)	gprc5ba (ENSOJAG00000000142)
Cyprinodontiformes	ANCESTRAL SPECIES	3	ENSGT00940000158476.b	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000170309	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT00990000205661	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00940000177735	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473	ENSGT00940000154505.A.d
Cyprinodontoidei	ANCESTRAL SPECIES	18	ENSGT00390000001390.a.b	ENSGT00940000158476.b	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT00990000205661	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000164472.a.a.b.b.a.b	ENSGT00940000159473	ENSGT00940000154505.A.d
NAME_4	ANCESTRAL SPECIES	186										ENSGT00940000165440	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT00990000205661	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000164472.a.a.b.b.a.b	ENSGT00940000159473	ENSGT00940000154505.A.d
Mummichog	MODERN SPECIES	293											ENSFHEG00000014555	CACNG5 (ENSFHEG00000014495)	CYTH3 (ENSFHEG00000014472) #20	ENSFHEG00000000348	SMIM10 (ENSFHEG00000014442)	rac1b (ENSFHEG00000014436) #22	stk19 (ENSFHEG00000014417)	DXO (ENSFHEG00000014408)	ENSFHEG00000014400	anks4b (ENSFHEG00000014370)	ENSFHEG00000000345	uqcrc2a (ENSFHEG00000014291)	MOSMO (ENSFHEG00000014276)	SDR42E2 (ENSFHEG00000014268)	CDR2 (ENSFHEG00000014245)	mfsd13al (ENSFHEG00000014239)	KDELR2 (ENSFHEG00000014221) #24	ENSFHEG00000014211	ENSFHEG00000014198	GPR139 (ENSFHEG00000013875)	proza (ENSFHEG00000013852)
Sheepshead minnow	MODERN SPECIES	495											ENSCVAG00000019611	ENSCVAG00000019200	CACNG5 (ENSCVAG00000019136)	CYTH3 (ENSCVAG00000019112) #20	SMIM10L2A (ENSCVAG00000019104)	rac1b (ENSCVAG00000019098) #22	stk19 (ENSCVAG00000019074)	DXO (ENSCVAG00000019072)	ENSCVAG00000019062	anks4b (ENSCVAG00000019019)	ENSCVAG00000019012	uqcrc2a (ENSCVAG00000019002)	MOSMO (ENSCVAG00000018987)	SDR42E2 (ENSCVAG00000018961)	CDR2 (ENSCVAG00000018856)	mfsd13al (ENSCVAG00000018844)	kdelr2a (ENSCVAG00000018804) #24	ENSCVAG00000018777	GPR139 (ENSCVAG00000018740)	proza (ENSCVAG00000018712)	gprc5ba (ENSCVAG00000018671)
Poeciliinae	ANCESTRAL SPECIES	1	ENSGT00940000156201.a.b	ENSGT00390000001390.a.b	ENSGT00940000158476.b	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000164472.a.a.b.b.a.b	ENSGT00940000159473	ENSGT00730000111039.C.h
Poecilia	ANCESTRAL SPECIES	8	ENSGT00940000156201.a.b	ENSGT00390000001390.a.b	ENSGT00940000158476.b	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000164472.a.a.b.b.a.b	ENSGT00940000159473	ENSGT00730000111039.C.h
NAME_6	ANCESTRAL SPECIES	56	ENSGT00940000156201.a.b	ENSGT00390000001390.a.b	ENSGT00940000158476.b	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000164472.a.a.b.b.a.b	ENSGT00940000159473	ENSGT00940000154505.A.d
Sailfin molly	MODERN SPECIES	42	ENSPLAG00000014632	cbx8a (ENSPLAG00000014638)	cbx4 (ENSPLAG00000014640)	tbc1d16 (ENSPLAG00000000343)	GAA (ENSPLAG00000014701)	ENSPLAG00000014711	ENSPLAG00000014780	tex2 (ENSPLAG00000014816)	axin2 (ENSPLAG00000014851)	mt2 (ENSPLAG00000014868)	cep112 (ENSPLAG00000000691)	ENSPLAG00000015152	CACNG5 (ENSPLAG00000015168)	CYTH3 (ENSPLAG00000015215) #20	SMIM10L2A (ENSPLAG00000015222)	rac1b (ENSPLAG00000015234) #22	stk19 (ENSPLAG00000015237)	DXO (ENSPLAG00000015246)	ENSPLAG00000015262	anks4b (ENSPLAG00000015268)	ENSPLAG00000015271	uqcrc2a (ENSPLAG00000015277)	MOSMO (ENSPLAG00000015294)	SDR42E2 (ENSPLAG00000015440)	CDR2 (ENSPLAG00000000601)	mfsd13al (ENSPLAG00000015473)	kdelr2a (ENSPLAG00000015482) #24	ENSPLAG00000015494	ENSPLAG00000015515	GPR139 (ENSPLAG00000015530)
Amazon molly	MODERN SPECIES	339	arhgap17b (ENSPFOG00000008310)	ENSPFOG00000008297	cbx8a (ENSPFOG00000008248)	cbx4 (ENSPFOG00000008181)	tbc1d16 (ENSPFOG00000008000)	GAA (ENSPFOG00000007744)	ENSPFOG00000019921	ENSPFOG00000007378	tex2 (ENSPFOG00000007182)	axin2 (ENSPFOG00000006993)	cep112 (ENSPFOG00000006557)	ENSPFOG00000006014	ENSPFOG00000005353 #20	CACNG5 (ENSPFOG00000005218)	CYTH3 (ENSPFOG00000004963) #20	rac1b (ENSPFOG00000004946) #22	stk19 (ENSPFOG00000004884)	DXO (ENSPFOG00000004778)	ENSPFOG00000004642	anks4b (ENSPFOG00000004626)	ENSPFOG00000004496	uqcrc2a (ENSPFOG00000004411)	MOSMO (ENSPFOG00000004366)	SDR42E2 (ENSPFOG00000003986)	ENSPFOG00000003897	mfsd13al (ENSPFOG00000003765)	kdelr2a (ENSPFOG00000003713) #24	ENSPFOG00000003679	ENSPFOG00000024471	GPR139 (ENSPFOG00000019920)	GPR139 (ENSPFOG00000022471)
Guppy	MODERN SPECIES	460	arhgap17b (ENSPREG00000006073)	ENSPREG00000006114	cbx8a (ENSPREG00000006133)	cbx4 (ENSPREG00000006180)	tbc1d16 (ENSPREG00000006203)	GAA (ENSPREG00000006260)	ENSPREG00000006279	ENSPREG00000006286	tex2 (ENSPREG00000006314)	axin2 (ENSPREG00000006329)	cep112 (ENSPREG00000006369)	ENSPREG00000006441	CACNG5 (ENSPREG00000006475)	CYTH3 (ENSPREG00000006506) #20	SMIM10L2A (ENSPREG00000006551)	rac1b (ENSPREG00000006566) #22	stk19 (ENSPREG00000006587)	DXO (ENSPREG00000006610)	ENSPREG00000006629	anks4b (ENSPREG00000006669)	ENSPREG00000006678	uqcrc2a (ENSPREG00000006714)	MOSMO (ENSPREG00000006821)	ENSPREG00000006855	mfsd13al (ENSPREG00000006965)	kdelr2a (ENSPREG00000006988) #24	ENSPREG00000007005	ENSPREG00000007016	GPR139 (ENSPREG00000007029)	ENSPREG00000007034	proza (ENSPREG00000007046)
Platyfish	MODERN SPECIES	7	ENSXMAG00000001443	cbx8a (ENSXMAG00000001429)	cbx4 (ENSXMAG00000023750)	tbc1d16 (ENSXMAG00000001390)	GAA (ENSXMAG00000001363)	ENSXMAG00000001361	ENSXMAG00000001310	tex2 (ENSXMAG00000001283)	axin2 (ENSXMAG00000001253)	cep112 (ENSXMAG00000001226)	ENSXMAG00000001186	CACNG5 (ENSXMAG00000023208)	ENSXMAG00000027465	CYTH3 (ENSXMAG00000001119) #20	SMIM10L2A (ENSXMAG00000001117)	rac1b (ENSXMAG00000001114) #22	stk19 (ENSXMAG00000001102)	DXO (ENSXMAG00000001092)	ENSXMAG00000001067	anks4b (ENSXMAG00000001065)	ENSXMAG00000001021	uqcrc2a (ENSXMAG00000000996)	MOSMO (ENSXMAG00000020995)	SDR42E2 (ENSXMAG00000000979)	CDR2 (ENSXMAG00000000971)	mfsd13al (ENSXMAG00000029275)	kdelr2a (ENSXMAG00000023067) #24	ENSXMAG00000022551	ENSXMAG00000000937	GPR139 (ENSXMAG00000000935)	ENSXMAG00000000934
Aplocheiloidei	ANCESTRAL SPECIES	7	ENSGT00390000001390.a.b	ENSGT00940000158476.b	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000170309	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00940000177735	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473	ENSGT00940000154505.A.d
Turquoise killifish	MODERN SPECIES	1612	GAA (ENSNFUG00015019352)	BX537350.1 (ENSNFUG00015021308)	TEX2 (ENSNFUG00015021316)	ERN1 (ENSNFUG00015021436)	ENSNFUG00015021618	axin2 (ENSNFUG00015021623)	CEP112 (ENSNFUG00015021635)	ENSNFUG00015021740	ENSNFUG00015021743	ENSNFUG00015021791	ENSNFUG00015022827	ENSNFUG00015022828	CACNG5 (ENSNFUG00015022833)	CYTH3 (ENSNFUG00015022900) #20	SMIM10 (ENSNFUG00015023405)	rac1b (ENSNFUG00015023407) #22	STK19 (ENSNFUG00015023411)	DOM3Z (ENSNFUG00015023416)	ENSNFUG00015023421	ANKS4B (ENSNFUG00015023425)	UQCRC2A (ENSNFUG00015023429)	C3H16ORF52 (ENSNFUG00015023516)	SDR42E2 (ENSNFUG00015023517)	CDR2 (ENSNFUG00015023519)	Nfu_g_1_019546 (ENSNFUG00015023521)	KDELR2A (ENSNFUG00015023522) #24	ENSNFUG00015023527	GPR139 (ENSNFUG00015023529)	PROZA (ENSNFUG00015000062)	GPRC5B (ENSNFUG00015000087)	ENSNFUG00015000093
Mangrove rivulus	MODERN SPECIES	61	ENSKMAG00000019712	cbx8a (ENSKMAG00000019685)	cbx4 (ENSKMAG00000019667)	tbc1d16 (ENSKMAG00000019612)	GAA (ENSKMAG00000019579)	ENSKMAG00000019565	ENSKMAG00000019499	tex2 (ENSKMAG00000019424)	axin2 (ENSKMAG00000019362)	cep112 (ENSKMAG00000019278)	ENSKMAG00000019184	CACNG5 (ENSKMAG00000019148)	ENSKMAG00000019130	CYTH3 (ENSKMAG00000019070) #20	SMIM10L2A (ENSKMAG00000019036)	rac1b (ENSKMAG00000019020) #22	stk19 (ENSKMAG00000019004)	DXO (ENSKMAG00000018985)	ENSKMAG00000018945	anks4b (ENSKMAG00000018924)	ENSKMAG00000018865	MOSMO (ENSKMAG00000018832)	SDR42E2 (ENSKMAG00000018809)	CDR2 (ENSKMAG00000018791)	mfsd13al (ENSKMAG00000018763)	ENSKMAG00000018739	KDELR2 (ENSKMAG00000018716) #24	ENSKMAG00000018695	GPR139 (ENSKMAG00000018680)	ENSKMAG00000018667	ENSKMAG00000018656
Percomorphaceae_C	ANCESTRAL SPECIES		ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b	ENSGT00980000202148	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000170309	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000165440	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT00990000205661	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00940000177735	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473	ENSGT00940000154505.A.d
Eupercaria	ANCESTRAL SPECIES	3	ENSGT00940000160081.d	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000170309	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000165440	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT00990000205661	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00940000177735	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473	ENSGT00940000154505.A.d
Tetraodontidae	ANCESTRAL SPECIES	8	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000170309	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000165440	ENSGT00940000156104.A	ENSGT00940000156104.C	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473	ENSGT00940000154505.A.d	ENSGT00950000182961.b.d	ENSGT00390000007907
Fugu	MODERN SPECIES	17	ENSTRUG00000001033	ENSTRUG00000027220	ENSTRUG00000029187	ENSTRUG00000030873	ENSTRUG00000029966	tex2 (ENSTRUG00000016336)	ENSTRUG00000024800	axin2 (ENSTRUG00000016298)	cep112 (ENSTRUG00000016280)	ENSTRUG00000024187	ENSTRUG00000027411	ENSTRUG00000029924	CACNG5 (ENSTRUG00000016225)	CYTH3 (ENSTRUG00000016212) #20	SMIM10L2A (ENSTRUG00000030950)	rac1b (ENSTRUG00000016201) #22	stk19 (ENSTRUG00000027186)	DXO (ENSTRUG00000021219)	ENSTRUG00000016166	anks4b (ENSTRUG00000020775)	ENSTRUG00000016116	uqcrc2a (ENSTRUG00000016072)	MOSMO (ENSTRUG00000016068)	CDR2 (ENSTRUG00000016030)	mfsd13al (ENSTRUG00000016016)	kdelr2a (ENSTRUG00000016003) #24	ENSTRUG00000028096	GPR139 (ENSTRUG00000027695)	proza (ENSTRUG00000015935)	gprc5ba (ENSTRUG00000015922)	ENSTRUG00000026741
Eupecaria_A	ANCESTRAL SPECIES	5	ENSGT00940000158476.b	ENSGT00940000160081.c.b	ENSGT00940000160081.d	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b.x.a	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT00990000205661	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00940000177735	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473	ENSGT00940000154505.A.d
Ballan wrasse	MODERN SPECIES	86	cbx8a (ENSLBEG00000026102)	cbx4 (ENSLBEG00000026088)	tbc1d16 (ENSLBEG00000026031)	ENSLBEG00000025994	ENSLBEG00000025969	ENSLBEG00000025956	ENSLBEG00000025940	ENSLBEG00000025907	tex2 (ENSLBEG00000025854)	axin2 (ENSLBEG00000025831)	cep112 (ENSLBEG00000025737)	ENSLBEG00000025604	CACNG5 (ENSLBEG00000025543)	CYTH3 (ENSLBEG00000025516) #20	SMIM10L2A (ENSLBEG00000025498)	rac1b (ENSLBEG00000025474) #22	stk19 (ENSLBEG00000025455)	DXO (ENSLBEG00000025439)	ENSLBEG00000025382	anks4b (ENSLBEG00000025353)	ENSLBEG00000025299	ENSLBEG00000025234	MOSMO (ENSLBEG00000025209)	SDR42E2 (ENSLBEG00000025129)	ENSLBEG00000025076	mfsd13al (ENSLBEG00000025053)	kdelr2a (ENSLBEG00000025018) #24	ENSLBEG00000024999	GPR139 (ENSLBEG00000024982)	proza (ENSLBEG00000024946)	gprc5ba (ENSLBEG00000024914)
Eupecaria_B	ANCESTRAL SPECIES		ENSGT00940000160081.c.b	ENSGT00940000160081.d	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b.x.a	ENSGT00390000013973.B.g.b.w	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT00990000205661	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00940000177735	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473	ENSGT00940000154505.A.d
Eupecaria_C	ANCESTRAL SPECIES	17	ENSGT00940000165638.a.a	ENSGT00390000001390.a.b	ENSGT00940000158476.b	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b.x.a	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473	ENSGT00940000154505.A.d	ENSGT00950000182961.b.d
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	29	ENSGT00940000165638.a.a	ENSGT00390000001390.a.b	ENSGT00940000158476.b	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b.x.a	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473	ENSGT00940000154505.A.d	ENSGT00950000182961.b.d
European seabass	MODERN SPECIES	21	aqp8b (ENSDLAG00005012261)	ENSDLAG00005012264	cbx8a (ENSDLAG00005012273)	cbx4 (ENSDLAG00005012275)	tbc1d16 (ENSDLAG00005012285)	ENSDLAG00005007529	ENSDLAG00005034164	ENSDLAG00005012858	ENSDLAG00005012610	axin2 (ENSDLAG00005012930)	cep112 (ENSDLAG00005012975)	ENSDLAG00005013176	ENSDLAG00005014737	CYTH3 (ENSDLAG00005018191) #20	ENSDLAG00005014765	rac1b (ENSDLAG00005031284) #22	stk19 (ENSDLAG00005029981)	ENSDLAG00005014817	ENSDLAG00005014834	anks4b (ENSDLAG00005014849)	ENSDLAG00005014857	uqcrc2a (ENSDLAG00005014897)	ENSDLAG00005034584	ENSDLAG00005014980	ENSDLAG00005014986	mfsd13al (ENSDLAG00005014994)	ENSDLAG00005016329 #24	ENSDLAG00005030278	ENSDLAG00005015189	proza (ENSDLAG00005015192)	ENSDLAG00005031097
Large yellow croaker	MODERN SPECIES	483	aqp8b (ENSLCRG00005011982)	ENSLCRG00005011984	cbx8a (ENSLCRG00005011986)	cbx4 (ENSLCRG00005011987)	tbc1d16 (ENSLCRG00005011990)	GAA (ENSLCRG00005012012)	ENSLCRG00005013767	ENSLCRG00005013774	tex2 (ENSLCRG00005013835)	axin2 (ENSLCRG00005013840)	cep112 (ENSLCRG00005013854)	ENSLCRG00005014727	CACNG5 (ENSLCRG00005014879)	CYTH3 (ENSLCRG00005014885) #20	SMIM10L2A (ENSLCRG00005014920)	rac1b (ENSLCRG00005014925) #22	stk19 (ENSLCRG00005014931)	DXO (ENSLCRG00005014933)	ENSLCRG00005014937	anks4b (ENSLCRG00005014939)	ENSLCRG00005014940	uqcrc2a (ENSLCRG00005014945)	MOSMO (ENSLCRG00005015526)	SDR42E2 (ENSLCRG00005015527)	ENSLCRG00005015529	mfsd13al (ENSLCRG00005015530)	kdelr2a (ENSLCRG00005002697) #24	ENSLCRG00005002705	GPR139 (ENSLCRG00005002713)	proza (ENSLCRG00005002717)	gprc5ba (ENSLCRG00005002724)
Gilthead seabream	MODERN SPECIES	15	cbx8a (ENSSAUG00010025091)	cbx4 (ENSSAUG00010025093)	tbc1d16 (ENSSAUG00010025095)	ENSSAUG00010025107	GAA (ENSSAUG00010017568)	ENSSAUG00010018870	ENSSAUG00010018871	ENSSAUG00010018880	tex2 (ENSSAUG00010018927)	axin2 (ENSSAUG00010018929)	cep112 (ENSSAUG00010018931)	ENSSAUG00010018963	CACNG5 (ENSSAUG00010020855)	CYTH3 (ENSSAUG00010020869) #20	SMIM10L2A (ENSSAUG00010022835)	rac1b (ENSSAUG00010022837) #22	stk19 (ENSSAUG00010022850)	DXO (ENSSAUG00010022851)	ENSSAUG00010022855	anks4b (ENSSAUG00010022856)	ENSSAUG00010022858	uqcrc2a (ENSSAUG00010022860)	MOSMO (ENSSAUG00010023139)	SDR42E2 (ENSSAUG00010023140)	CDR2 (ENSSAUG00010023141)	mfsd13al (ENSSAUG00010023142)	kdelr2a (ENSSAUG00010023145) #24	ENSSAUG00010023146	GPR139 (ENSSAUG00010023149)	proza (ENSSAUG00010023150)	gprc5ba (ENSSAUG00010023151)
Perciformes	ANCESTRAL SPECIES	1	ENSGT00940000158476.b	ENSGT00940000160081.c.b	ENSGT00940000160081.d	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b.w	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT00990000205661	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00940000177735	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473	ENSGT00940000154505.A.d
Cottioidei	ANCESTRAL SPECIES	1	ENSGT00390000001390.a.b	ENSGT00940000158476.b	ENSGT00940000160081.c.b	ENSGT00940000160081.d	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b.w	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00940000177735	ENSGT00390000004010.a.b.a.a #24	ENSGT01100000264132	ENSGT00940000159473	ENSGT00940000154505.A.d
Lumpfish	MODERN SPECIES	23	ENSCLMG00005019457	cbx8a (ENSCLMG00005019456)	cbx4 (ENSCLMG00005019454)	ENSCLMG00005019453	tbc1d16 (ENSCLMG00005019452)	GAA (ENSCLMG00005019130)	ENSCLMG00005019125	ENSCLMG00005016843	tex2 (ENSCLMG00005016818)	axin2 (ENSCLMG00005016797)	cep112 (ENSCLMG00005016779)	ENSCLMG00005015106	CACNG5 (ENSCLMG00005015098)	CYTH3 (ENSCLMG00005014752) #20	SMIM10L2B (ENSCLMG00005014745)	rac1b (ENSCLMG00005014703) #22	stk19 (ENSCLMG00005014700)	DXO (ENSCLMG00005014699)	ENSCLMG00005014697	anks4b (ENSCLMG00005014695)	ENSCLMG00005014694	uqcrc2a (ENSCLMG00005012962)	MOSMO (ENSCLMG00005012941)	SDR42E2 (ENSCLMG00005012940)	CDR2 (ENSCLMG00005012938)	mfsd13al (ENSCLMG00005012937)	ENSCLMG00005012936	kdelr2a (ENSCLMG00005012935) #24	ENSCLMG00005012934	GPR139 (ENSCLMG00005012932)	proza (ENSCLMG00005012931)
Stickleback	MODERN SPECIES	10	aqp8b (ENSGACG00000011754)	ENSGACG00000011749	cbx8a (ENSGACG00000011737)	cbx4 (ENSGACG00000011731)	tbc1d16 (ENSGACG00000011720)	GAA (ENSGACG00000011709)	ENSGACG00000011706	ENSGACG00000011700	tex2 (ENSGACG00000011696)	axin2 (ENSGACG00000011694)	ENSGACG00000011692	ENSGACG00000011690	ENSGACG00000011652	CACNG5 (ENSGACG00000011643)	ENSGACG00000011632 #20	rac1b (ENSGACG00000011601) #22	stk19 (ENSGACG00000011592)	DXO (ENSGACG00000011578)	ENSGACG00000011563	ENSGACG00000011550	uqcrc2a (ENSGACG00000011541)	MOSMO (ENSGACG00000011537)	SDR42E2 (ENSGACG00000011530)	CDR2 (ENSGACG00000011526)	mfsd13al (ENSGACG00000011523)	ENSGACG00000011520	kdelr2a (ENSGACG00000011503) #24	GPR139 (ENSGACG00000011500)	proza (ENSGACG00000011445)	gprc5ba (ENSGACG00000011440)	sun1b (ENSGACG00000011433)
Perciformes_a	ANCESTRAL SPECIES	1	ENSGT00390000001390.a.b	ENSGT00940000158476.b	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b.x.a	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT00990000205661	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473	ENSGT00940000154505.A.d	ENSGT00950000182961.b.d
Pike perch	MODERN SPECIES	27	aqp8b (ENSSLUG00000014835)	ENSSLUG00000014826	cbx8a (ENSSLUG00000014819)	cbx4 (ENSSLUG00000014812)	tbc1d16 (ENSSLUG00000014777)	GAA (ENSSLUG00000014647)	ENSSLUG00000014621	ENSSLUG00000012371	tex2 (ENSSLUG00000012253)	axin2 (ENSSLUG00000012232)	cep112 (ENSSLUG00000012204)	ENSSLUG00000011915	CACNG5 (ENSSLUG00000011863)	CYTH3 (ENSSLUG00000010155) #20	SMIM10L2B (ENSSLUG00000010078)	rac1b (ENSSLUG00000010051) #22	stk19 (ENSSLUG00000010047)	DXO (ENSSLUG00000010041)	ENSSLUG00000010034	anks4b (ENSSLUG00000010029)	ENSSLUG00000010015	uqcrc2a (ENSSLUG00000007322)	MOSMO (ENSSLUG00000007174)	SDR42E2 (ENSSLUG00000007129)	CDR2 (ENSSLUG00000007111)	mfsd13al (ENSSLUG00000007096)	kdelr2a (ENSSLUG00000007088) #24	ENSSLUG00000007077	GPR139 (ENSSLUG00000007068)	proza (ENSSLUG00000007061)	gprc5ba (ENSSLUG00000007050)
Channel bull blenny	MODERN SPECIES	22	ENSCGOG00000005405	cbx8a (ENSCGOG00000005401)	cbx4 (ENSCGOG00000005398)	tbc1d16 (ENSCGOG00000005380)	GAA (ENSCGOG00000005323)	ENSCGOG00000005319	ENSCGOG00000004882	tex2 (ENSCGOG00000004850)	axin2 (ENSCGOG00000004824)	cep112 (ENSCGOG00000004670)	ENSCGOG00000002344	CACNG5 (ENSCGOG00000002288)	CYTH3 (ENSCGOG00000001075) #20	ENSCGOG00000001041	SMIM10L2B (ENSCGOG00000001040)	rac1b (ENSCGOG00000001036) #22	stk19 (ENSCGOG00000001035)	DXO (ENSCGOG00000001034)	ENSCGOG00000001030	anks4b (ENSCGOG00000001025)	ENSCGOG00000001020	uqcrc2a (ENSCGOG00000000731)	MOSMO (ENSCGOG00000000623)	SDR42E2 (ENSCGOG00000000620)	CDR2 (ENSCGOG00000000614)	ENSCGOG00000000613	mfsd13al (ENSCGOG00000000607)	KDELR2 (ENSCGOG00000000602) #24	ENSCGOG00000000596	GPR139 (ENSCGOG00000000593)	proza (ENSCGOG00000000588)
Percomorphaceae_D	ANCESTRAL SPECIES	1	ENSGT00390000001390.a.b	ENSGT00940000158476.b	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT00990000205661	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00940000177735	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473	ENSGT00940000154505.A.d
Carangaria	ANCESTRAL SPECIES	4	ENSGT00940000165638.a.a	ENSGT00390000001390.a.b	ENSGT00940000158476.b	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00940000177735	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473	ENSGT00940000154505.A.d
Carangaria_A	ANCESTRAL SPECIES	12	ENSGT00940000165638.a.a	ENSGT00390000001390.a.b	ENSGT00940000158476.b	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00940000177735	ENSGT00390000004010.a.b.a.a #24	ENSGT00390000006420	ENSGT00940000159473	ENSGT00940000154505.A.d
Seriola	ANCESTRAL SPECIES	26	ENSGT00940000165638.a.a	ENSGT00390000001390.a.b	ENSGT00940000158476.b	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00940000177735	ENSGT00390000004010.a.b.a.a #24	ENSGT00390000006420	ENSGT00940000159473	ENSGT00940000154505.A.d
Yellowtail amberjack	MODERN SPECIES	3052	ENSSLDG00000023381	cbx8a (ENSSLDG00000023375)	cbx4 (ENSSLDG00000023361)	tbc1d16 (ENSSLDG00000023327)	ENSSLDG00000023314	GAA (ENSSLDG00000023298)	ENSSLDG00000023293	ENSSLDG00000023254	tex2 (ENSSLDG00000023227)	axin2 (ENSSLDG00000023193)	cep112 (ENSSLDG00000022978)	ENSSLDG00000022924	CACNG5 (ENSSLDG00000022909)	CYTH3 (ENSSLDG00000022892) #20	SMIM10L2A (ENSSLDG00000022879)	rac1b (ENSSLDG00000022860) #22	stk19 (ENSSLDG00000022837)	DXO (ENSSLDG00000022817)	ENSSLDG00000022781	anks4b (ENSSLDG00000022774)	ENSSLDG00000022759	uqcrc2a (ENSSLDG00000022735)	MOSMO (ENSSLDG00000022720)	SDR42E2 (ENSSLDG00000022699)	ENSSLDG00000022683	mfsd13al (ENSSLDG00000022665)	kdelr2a (ENSSLDG00000022647) #24	ENSSLDG00000022625	GPR139 (ENSSLDG00000022610)	proza (ENSSLDG00000022591)	gprc5ba (ENSSLDG00000022584)
Greater amberjack	MODERN SPECIES	70	ENSSDUG00000008917	cbx8a (ENSSDUG00000008952)	cbx4 (ENSSDUG00000008967)	tbc1d16 (ENSSDUG00000008989)	GAA (ENSSDUG00000009067)	ENSSDUG00000009085	ENSSDUG00000009098	tex2 (ENSSDUG00000009199)	axin2 (ENSSDUG00000009279)	cep112 (ENSSDUG00000009353)	ENSSDUG00000009642	CACNG5 (ENSSDUG00000009663)	CYTH3 (ENSSDUG00000009694) #20	SMIM10L2A (ENSSDUG00000009708)	ENSSDUG00000009717	rac1b (ENSSDUG00000009723) #22	stk19 (ENSSDUG00000009737)	DXO (ENSSDUG00000009756)	ENSSDUG00000009809	anks4b (ENSSDUG00000009826)	ENSSDUG00000009831	uqcrc2a (ENSSDUG00000009858)	MOSMO (ENSSDUG00000009922)	SDR42E2 (ENSSDUG00000009931)	ENSSDUG00000009959	mfsd13al (ENSSDUG00000009976)	ENSSDUG00000009998	kdelr2a (ENSSDUG00000010012) #24	ENSSDUG00000010039	GPR139 (ENSSDUG00000010057)	proza (ENSSDUG00000010065)
Barramundi perch	MODERN SPECIES	41	aqp8b (ENSLCAG00010013215)	ENSLCAG00010013210	cbx8a (ENSLCAG00010013207)	ENSLCAG00010013205	tbc1d16 (ENSLCAG00010013200)	GAA (ENSLCAG00010013148)	ENSLCAG00010013125	ENSLCAG00010013076	tex2 (ENSLCAG00010013048)	axin2 (ENSLCAG00010013045)	cep112 (ENSLCAG00010013035)	ENSLCAG00010012956	CACNG5 (ENSLCAG00010012918)	CYTH3 (ENSLCAG00010012860) #20	SMIM10L2A (ENSLCAG00010012841)	rac1b (ENSLCAG00010012837) #22	stk19 (ENSLCAG00010012833)	DXO (ENSLCAG00010012828)	ENSLCAG00010012820	anks4b (ENSLCAG00010012814)	ENSLCAG00010012809	uqcrc2a (ENSLCAG00010012773)	MOSMO (ENSLCAG00010012761)	CDR2 (ENSLCAG00010012754)	mfsd13al (ENSLCAG00010012750)	kdelr2a (ENSLCAG00010012744) #24	ENSLCAG00010012742
Pleuronectoidei	ANCESTRAL SPECIES	2	ENSGT00940000165638.a.a	ENSGT00390000001390.a.b	ENSGT00940000158476.b	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00390000004010.a.b.a.a #24	ENSGT00940000175471	ENSGT00940000159473	ENSGT00940000154505.A.d	ENSGT00950000182961.b.d
Turbot	MODERN SPECIES	10	arhgap17b (ENSSMAG00000014904)	aqp8b (ENSSMAG00000014942)	ENSSMAG00000014958	cbx8a (ENSSMAG00000026335)	cbx4 (ENSSMAG00000037937)	tbc1d16 (ENSSMAG00000014973)	ENSSMAG00000014997	ENSSMAG00000015028	ENSSMAG00000015042	tex2 (ENSSMAG00000015085)	axin2 (ENSSMAG00000015144)	cep112 (ENSSMAG00000031566)	ENSSMAG00000015246	CYTH3 (ENSSMAG00000015339) #20	ENSSMAG00000015362	Rac1 (ENSSMAG00000015387) #22	stk19 (ENSSMAG00000015429)	ENSSMAG00000015443	ENSSMAG00000015459	anks4b (ENSSMAG00000031243)	ENSSMAG00000015513	ENSSMAG00000015559	ENSSMAG00000015585	ENSSMAG00000015594	ENSSMAG00000015607	mfsd13al (ENSSMAG00000015613)	ENSSMAG00000029156 #24	ENSSMAG00000022002	ENSSMAG00000037733	ENSSMAG00000015684	ENSSMAG00000015703
Tongue sole	MODERN SPECIES	8	SSTR2 (ENSCSEG00000015285)	ENSCSEG00000015259	MED9 (ENSCSEG00000015253)	ENSCSEG00000015250	SOX8 (ENSCSEG00000014605)	RAB26 (ENSCSEG00000014565)	ENSCSEG00000014551	ENSCSEG00000014500	tex2 (ENSCSEG00000014470)	axin2 (ENSCSEG00000014442)	ENSCSEG00000014392	ENSCSEG00000014372	CACNG5 (ENSCSEG00000014362)	CYTH3 (ENSCSEG00000014330) #20	SMIM10 (ENSCSEG00000014320)	rac1b (ENSCSEG00000014314) #22	stk19 (ENSCSEG00000014309)	DXO (ENSCSEG00000014295)	ENSCSEG00000014285	anks4b (ENSCSEG00000014275)	ENSCSEG00000014264	uqcrc2a (ENSCSEG00000014251)	MOSMO (ENSCSEG00000014241)	ENSCSEG00000014235	ENSCSEG00000014231	mfsd13al (ENSCSEG00000014223)	kdelr2a (ENSCSEG00000014214) #24	ENSCSEG00000014209	ENSCSEG00000014201	GPR139 (ENSCSEG00000014194)	proza (ENSCSEG00000014186)
Anabantaria	ANCESTRAL SPECIES	6	ENSGT00390000001390.a.b	ENSGT00940000158476.b	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b	ENSGT00940000165054.D	ENSGT00390000000463.b.d	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT00990000205661	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00390000004010.a.b.a.a #24	ENSGT01100000264132	ENSGT00940000159473	ENSGT00940000154505.A.d	ENSGT00950000182961.b.d
Zig-zag eel	MODERN SPECIES	22	ENSMAMG00000023448	cbx8a (ENSMAMG00000023446)	cbx4 (ENSMAMG00000023445)	tbc1d16 (ENSMAMG00000023443)	ENSMAMG00000023442	ENSMAMG00000023441	ENSMAMG00000023439	tex2 (ENSMAMG00000023434)	axin2 (ENSMAMG00000023431)	cep112 (ENSMAMG00000023424)	ENSMAMG00000023421	ENSMAMG00000023419	CYTH3 (ENSMAMG00000023412) #20	ENSMAMG00000023410	ENSMAMG00000023409	rac1b (ENSMAMG00000023406) #22	stk19 (ENSMAMG00000023404)	ENSMAMG00000023402	ENSMAMG00000027732	anks4b (ENSMAMG00000023396)	ENSMAMG00000023391	ENSMAMG00000023388	ENSMAMG00000023385	ENSMAMG00000023383	ENSMAMG00000023380	mfsd13al (ENSMAMG00000023376)	ENSMAMG00000027107 #24	ENSMAMG00000026503	ENSMAMG00000023371	proza (ENSMAMG00000023366)	ENSMAMG00000023364
Anabantoidei	ANCESTRAL SPECIES	7	ENSGT00940000156201.a.b	ENSGT00390000001390.a.b	ENSGT00940000158476.b	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b	ENSGT00940000165054.D	ENSGT00390000000463.b.d	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.q #20	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251	ENSGT00390000018266	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00390000004010.a.b.a.a #24	ENSGT01100000264132	ENSGT00940000159473	ENSGT00940000154505.A.d	ENSGT00950000182961.b.d
Climbing perch	MODERN SPECIES	21	ENSATEG00000024494	cbx8a (ENSATEG00000025484)	cbx4 (ENSATEG00000024489)	tbc1d16 (ENSATEG00000024486)	ENSATEG00000024482	ENSATEG00000004847	ENSATEG00000026246	ENSATEG00000024468	tex2 (ENSATEG00000024459)	axin2 (ENSATEG00000024454)	cep112 (ENSATEG00000024444)	ENSATEG00000024440	ENSATEG00000024434	CYTH3 (ENSATEG00000024432) #20	ENSATEG00000024431	rac1b (ENSATEG00000026896) #22	stk19 (ENSATEG00000029140)	ENSATEG00000024423	ENSATEG00000024420	anks4b (ENSATEG00000024418)	ENSATEG00000024416	ENSATEG00000024412	ENSATEG00000024409	ENSATEG00000024403	ENSATEG00000024399	mfsd13al (ENSATEG00000024396)	ENSATEG00000024394 #24	ENSATEG00000027141	ENSATEG00000024391	proza (ENSATEG00000024389)	ENSATEG00000024387
Siamese fighting fish	MODERN SPECIES	19	ENSBSLG00000019270	cbx8a (ENSBSLG00000019283)	cbx4 (ENSBSLG00000019294)	tbc1d16 (ENSBSLG00000019297)	GAA (ENSBSLG00000019342)	ENSBSLG00000020235	ENSBSLG00000020283	ENSBSLG00000020686	ENSBSLG00000008237	axin2 (ENSBSLG00000008245)	cep112 (ENSBSLG00000008354)	ENSBSLG00000009128	CACNG5 (ENSBSLG00000010565)	CYTH3 (ENSBSLG00000010730) #20	SMIM10 (ENSBSLG00000011582)	rac1b (ENSBSLG00000011629) #22	stk19 (ENSBSLG00000011721)	DXO (ENSBSLG00000011755)	ENSBSLG00000011789	anks4b (ENSBSLG00000011822)	ENSBSLG00000011843	uqcrc2a (ENSBSLG00000011949)	MOSMO (ENSBSLG00000012392)	SDR42E2 (ENSBSLG00000012399)	CDR2 (ENSBSLG00000013033)	mfsd13al (ENSBSLG00000013076)	kdelr2a (ENSBSLG00000013132) #24	ENSBSLG00000013182	GPR139 (ENSBSLG00000013216)	proza (ENSBSLG00000013240)	gprc5ba (ENSBSLG00000013280)
Pinecone sodierfish	MODERN SPECIES	22	ENSMMDG00005016530	ENSMMDG00005016532	tbc1d16 (ENSMMDG00005016534)	GAA (ENSMMDG00005016550)	ENSMMDG00005016553	ENSMMDG00005016555	ENSMMDG00005016569	ENSMMDG00005016676	axin2 (ENSMMDG00005016677)	cep112 (ENSMMDG00005016695)	ENSMMDG00005016718	CACNG5 (ENSMMDG00005016745)	CYTH3 (ENSMMDG00005016800) #20	SMIM10 (ENSMMDG00005019289)	ENSMMDG00005019291	rac1b (ENSMMDG00005019293) #22	stk19 (ENSMMDG00005019295)	DXO (ENSMMDG00005019296)	ENSMMDG00005019298	anks4b (ENSMMDG00005004162)	anks4b (ENSMMDG00005004171)	ENSMMDG00005004178	snu13a (ENSMMDG00005004203)	uqcrc2a (ENSMMDG00005004394)	ENSMMDG00005005740	SDR42E2 (ENSMMDG00005005747)	CDR2 (ENSMMDG00005005774)	mfsd13al (ENSMMDG00005005791)	KDELR2 (ENSMMDG00005005807) #24	ENSMMDG00005005814	GPR139 (ENSMMDG00005005818)
Cod	MODERN SPECIES	11	arhgap17b (ENSGMOG00000011331)	AQP8 (ENSGMOG00000032268)	ENSGMOG00000023990	cbx8a (ENSGMOG00000027284)	cbx4 (ENSGMOG00000031904)	tbc1d16 (ENSGMOG00000011285)	ENSGMOG00000011262	ENSGMOG00000011232	tex2 (ENSGMOG00000011198)	axin2 (ENSGMOG00000031244)	cep112 (ENSGMOG00000011134)	ENSGMOG00000026255	CACNG5 (ENSGMOG00000035294)	CYTH3 (ENSGMOG00000008919) #20	ENSGMOG00000030185	rac1b (ENSGMOG00000028922) #22	stk19 (ENSGMOG00000008901)	ENSGMOG00000008886	ENSGMOG00000008871	anks4b (ENSGMOG00000008850)	ENSGMOG00000008834	ENSGMOG00000024263	ENSGMOG00000008817	ENSGMOG00000027166	mfsd13al (ENSGMOG00000008785)	ENSGMOG00000026069	ENSGMOG00000011741	ENSGMOG00000020244	ENSGMOG00000006745	ENSGMOG00000025948	ENSGMOG00000023369
Protacanthopterygii	DUPLICATION
Protacanthopterygii	ANCESTRAL SPECIES	8	ENSGT00390000001390.a.b	ENSGT00940000158476.b	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000170309	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.s.a #20	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b.e #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00550000074840.q	ENSGT00940000166251	ENSGT00940000154915	ENSGT00390000018266	ENSGT00940000159290	ENSGT00940000160393	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00390000014131	ENSGT00940000160560.b
Salmoninae	ANCESTRAL SPECIES		ENSGT00940000159355.cb.b	ENSGT00390000013973.B.g.b.z.a.a	ENSGT00940000165054.D	ENSGT00390000000463.b.f	ENSGT00940000170309	ENSGT00940000159355.cb.a	ENSGT00390000013973.B.g.b.y	ENSGT00940000159761	ENSGT00390000000463.b.e	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A.e.a	ENSGT01050000244961.a.a.b	ENSGT00940000155825.s.a #20	ENSGT00390000014547.h.a	ENSGT00940000153500.a.a.w.b.e #22	ENSGT00390000018295.e.b	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251.a	ENSGT00550000074840.q	ENSGT00940000166251.b.a.a	ENSGT00390000018266.wd	ENSGT00940000159290	ENSGT00940000160393.f	ENSGT00390000018570.a.a.b	ENSGT00940000164377	ENSGT00390000014131	ENSGT00390000004010.a.b.a.a.a #24
Huchen	DUPLICATION
Huchen	MODERN SPECIES	2244															ENSHHUG00000041895	ENSHHUG00000041515 #22	STK19 (ENSHHUG00000041508)	DXO (ENSHHUG00000041505)	ENSHHUG00000041501	anks4b (ENSHHUG00000041499)	ENSHHUG00000041487	snu13a (ENSHHUG00000041452)	uqcrc2a (ENSHHUG00000041227)	ENSHHUG00000041217	ENSHHUG00000041191
Huchen	MODERN SPECIES	291									ptprga (ENSHHUG00000006002)	fezf2 (ENSHHUG00000005993)	ENSHHUG00000005655	ENSHHUG00000005614	CACNG5 (ENSHHUG00000005601)	CYTH3 (ENSHHUG00000005130) #20	ENSHHUG00000005123	RAC1 (ENSHHUG00000004781) #22	ENSHHUG00000004743	ENSHHUG00000004741	ENSHHUG00000004739	ENSHHUG00000004734	snu13a (ENSHHUG00000004697)	uqcrc2a (ENSHHUG00000004614)	ENSHHUG00000004583
Salmoninae_a	ANCESTRAL SPECIES	79	ENSGT00940000165638.a.a.c	ENSGT00390000001390.a.b.b.b	ENSGT00940000158476.b	ENSGT00940000160081.c.b	ENSGT00940000158541.e.a	ENSGT00940000159355.cb.b	ENSGT00390000013973.B.g.b.z.b	ENSGT00940000165054.D	ENSGT00390000000463.b.f	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A.e.a	ENSGT01050000244961.a.a.b	ENSGT00940000155825.s.a #20	ENSGT00390000014547.h.a	ENSGT00940000153500.a.a.w.b.e #22	ENSGT00390000018295.e.b	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00550000074840.q.c	ENSGT00940000166251.b.a.a	ENSGT00390000018266.wd	ENSGT00940000159290	ENSGT00940000160393.f	ENSGT00390000018570.a.a.b.e	ENSGT00940000164377	ENSGT00390000004010.a.b.a.a.b.a #24	ENSGT00990000204948.a	ENSGT00940000177735
Oncorhynchus	ANCESTRAL SPECIES	44	ENSGT00940000160081.c.b	ENSGT00940000158541.e.a	ENSGT00940000159355.cb.b	ENSGT00390000013973.B.g.b.z.b	ENSGT00940000165054.D	ENSGT00990000203949.d.b.b	ENSGT00390000013973.B.g.b.y	ENSGT00940000159761	ENSGT00390000000463.b.e	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A.e.a	ENSGT01050000244961.a.a.b	ENSGT00940000155825.s.a #20	ENSGT00390000014547.g	ENSGT00940000153500.a.a.w.b.e #22	ENSGT00390000018295.e.b	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00550000074840.q.d	ENSGT00940000166251.a	ENSGT00940000177189.g.a.a	ENSGT00390000018266.wd	ENSGT00940000159290.c	ENSGT00940000160393.f	ENSGT00390000018570.a.a.b.e	ENSGT00940000164377	ENSGT00940000177735	ENSGT00390000004010.a.b.a.a.b.b #24
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	3	gsg1l (ENSOMYG00000056215)	fbxl16 (ENSOMYG00000048426)	ENSOMYG00000062204	ENSOMYG00000016352	ENSOMYG00000016003	ENSOMYG00000053739	ENSOMYG00000067209	ENSOMYG00000013069	tex2 (ENSOMYG00000014022)	axin2 (ENSOMYG00000063317)	cep112 (ENSOMYG00000012891)	ENSOMYG00000060728	ENSOMYG00000018218	CYTH3 (ENSOMYG00000018202) #20	ENSOMYG00000012875	RAC1 (ENSOMYG00000012676) #22	ENSOMYG00000012616	ENSOMYG00000012599	ENSOMYG00000012582	anks4b (ENSOMYG00000012595)	ENSOMYG00000012572	ENSOMYG00000048557	ENSOMYG00000066381	ENSOMYG00000058348	ENSOMYG00000067851	ENSOMYG00000050307	ENSOMYG00000062075	ttyh2l (ENSOMYG00000051182)	ENSOMYG00000066724	ENSOMYG00000067095	CHMP6 (ENSOMYG00000058668)
Rainbow trout	MODERN SPECIES	4	cbx4 (ENSOMYG00000018524)	tbc1d16 (ENSOMYG00000060882)	ENSOMYG00000013473	ENSOMYG00000050298	ENSOMYG00000068406	ENSOMYG00000015969	ENSOMYG00000014306	tex2 (ENSOMYG00000012939)	axin2 (ENSOMYG00000018349)	ENSOMYG00000057167	cep112 (ENSOMYG00000051132)	ENSOMYG00000018263	ENSOMYG00000066395	CYTH3 (ENSOMYG00000018175) #20	ENSOMYG00000057467	RAC1 (ENSOMYG00000018033) #22	ENSOMYG00000065811	ENSOMYG00000018014	ENSOMYG00000007639	ENSOMYG00000007577	anks4b (ENSOMYG00000007540)	ENSOMYG00000007494	ENSOMYG00000069273	uqcrc2a (ENSOMYG00000006950)	ENSOMYG00000006271	MOSMO (ENSOMYG00000006255)	ENSOMYG00000057360	SDR42E2 (ENSOMYG00000072940)	ENSOMYG00000018550	mfsd13al (ENSOMYG00000018532)	ENSOMYG00000037346
Oncorhynchus_a	ANCESTRAL SPECIES	120								ENSGT00940000157338.b	ENSGT00940000166387	ENSGT00390000006544	ENSGT00940000156104.A.e.a	ENSGT01050000244961.a.a.b	ENSGT00940000155825.s.a #20	ENSGT00980000198850	ENSGT00390000014547.g	ENSGT00940000153500.a.a.w.b.e #22	ENSGT00390000018295.e.b	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00550000074840.q.c	ENSGT00940000166251.a	ENSGT00940000177189.g.a.a	ENSGT00390000018266.wd	ENSGT00940000159290.c	ENSGT00940000160393.e	ENSGT00390000018570.a.a.b.e	ENSGT00940000164377	ENSGT00940000177735	ENSGT00390000004010.a.b.a.a.b.a #24
Coho salmon	MODERN SPECIES	35	ENSOKIG00005044874	tbc1d16 (ENSOKIG00005044837)	GAA (ENSOKIG00005044194)	ENSOKIG00005044115	ENSOKIG00005044104	ENSOKIG00005043872	ENSOKIG00005043816	tex2 (ENSOKIG00005043309)	axin2 (ENSOKIG00005043263)	ENSOKIG00005043238	cep112 (ENSOKIG00005042901)	ENSOKIG00005042361	CACNG5 (ENSOKIG00005042308)	ENSOKIG00005041815 #20	ENSOKIG00005041787	ENSOKIG00005041649 #22	stk19 (ENSOKIG00005041629)	DXO (ENSOKIG00005041621)	ENSOKIG00005041598	anks4b (ENSOKIG00005041581)	ENSOKIG00005041523	snu13a (ENSOKIG00005041499)	uqcrc2a (ENSOKIG00005040567)	ENSOKIG00005040515	MOSMO (ENSOKIG00005040490)	ENSOKIG00005040336	SDR42E2 (ENSOKIG00005040250)	CDR2 (ENSOKIG00005040190)	mfsd13al (ENSOKIG00005040098)	ENSOKIG00005040080	kdelr2a (ENSOKIG00005040044) #24
Chinook salmon	MODERN SPECIES	1043															SMIM10 (ENSOTSG00005022517)	ENSOTSG00005022420 #22	stk19 (ENSOTSG00005022409)	DXO (ENSOTSG00005022407)	ENSOTSG00005022406	anks4b (ENSOTSG00005022405)	ENSOTSG00005022404	uqcrc2a (ENSOTSG00005022401)
Salmo	DUPLICATION
Salmo	ANCESTRAL SPECIES	105															ENSGT00390000014547.h.b	ENSGT00940000153500.a.a.w.b.e.e #22	ENSGT00390000018295.e.a	ENSGT00390000006425.k	ENSGT00940000165478.k	ENSGT00390000017548.a.t	ENSGT00940000166319.c	ENSGT00550000074840.q.c.a	ENSGT00940000166251.b.a.a	ENSGT00390000018266.wd	ENSGT00940000159290	ENSGT00940000160393.f	ENSGT00390000018570.a.a.b.e.a	ENSGT00940000164377	ENSGT00390000004010.a.b.a.a.b.b #24	ENSGT00390000014131	ENSGT00390000004010.a.b.a.a.a #24
Atlantic salmon	MODERN SPECIES	25	aqp8 (ENSSSAG00000037417)	ENSSSAG00000088176	CBX8 (ENSSSAG00000010070)	cbx4 (ENSSSAG00000111048)	tbc1d16 (ENSSSAG00000000640)	ENSSSAG00000114795	ENSSSAG00000040524	ENSSSAG00000040242	ENSSSAG00000005230	tex2 (ENSSSAG00000077472)	axin2 (ENSSSAG00000093630)	cep112 (ENSSSAG00000114158)	ENSSSAG00000042687	CYTH3 (ENSSSAG00000100528) #20	ENSSSAG00000042941	RAC1 (ENSSSAG00000042920) #22	ENSSSAG00000037974	ENSSSAG00000004075	ENSSSAG00000082294	anks4b (ENSSSAG00000042826)	ENSSSAG00000121105	ENSSSAG00000097526	uqcrc2a (ENSSSAG00000042984)	MOSMO (ENSSSAG00000112727)	ENSSSAG00000118349	SDR42E2 (ENSSSAG00000001764)	ENSSSAG00000097687	mfsd13al (ENSSSAG00000045167)	kdelr2a (ENSSSAG00000045213) #24	ENSSSAG00000089800	ENSSSAG00000045256
River trout	MODERN SPECIES		tbc1d16 (ENSSTUG00000003042)	GAA (ENSSTUG00000002971)	GAA (ENSSTUG00000002946)	ENSSTUG00000002911	ENSSTUG00000002873	ENSSTUG00000002848	ENSSTUG00000002839	ENSSTUG00000002161	tex2 (ENSSTUG00000002001)	axin2 (ENSSTUG00000001975)	ENSSTUG00000001921	ENSSTUG00000001671	CACNG5 (ENSSTUG00000001604)	CYTH3 (ENSSTUG00000001095) #20	ENSSTUG00000000927	RAC1 (ENSSTUG00000000878) #22	STK19 (ENSSTUG00000000843)	DXO (ENSSTUG00000000838)	ENSSTUG00000000824	anks4b (ENSSTUG00000000819)	ENSSTUG00000000809	snu13a (ENSSTUG00000000797)	uqcrc2a (ENSSTUG00000000440)	MOSMO (ENSSTUG00000000328)	ENSSTUG00000000313	SDR42E2 (ENSSTUG00000000293)	CDR2 (ENSSTUG00000016558)	mfsd13al (ENSSTUG00000016549)	kdelr2a (ENSSTUG00000016542) #24	ENSSTUG00000016537	ENSSTUG00000016533
Salmo	ANCESTRAL SPECIES	99	ENSGT00940000160081.c.b.e	ENSGT00940000158541.e.a	ENSGT00940000159355.bb	ENSGT00940000159355.cb.a.b	ENSGT00390000013973.B.g.b.y	ENSGT00940000159355.cb.a.a	ENSGT00390000013973.B.g.b.z.a.a.b	ENSGT00940000165054.D.g	ENSGT00390000000463.b.f.a	ENSGT00940000157338.b.h	ENSGT00390000006544	ENSGT00940000156104.A.e.a	ENSGT01050000244961.a.a.b	ENSGT00940000155825.s.a #20	ENSGT00390000014547.h.a	ENSGT00940000153500.a.a.w.b.e.f #22	ENSGT00390000018295.e.b	ENSGT00390000006425.l	ENSGT00940000165478.l	ENSGT00390000017548.a.s	ENSGT00940000166319.d	ENSGT00550000074840.q.d
Atlantic salmon	MODERN SPECIES	22	ENSSSAG00000091609	cbx8a (ENSSSAG00000114988)	cbx4 (ENSSSAG00000041681)	tbc1d16 (ENSSSAG00000040590)	ENSSSAG00000000467	ENSSSAG00000005181	ENSSSAG00000010255	tex2 (ENSSSAG00000084431)	axin2 (ENSSSAG00000000697)	ENSSSAG00000102375	ENSSSAG00000042675	ENSSSAG00000055737	ENSSSAG00000042275	CYTH3 (ENSSSAG00000082306) #20	ENSSSAG00000086195	RAC1 (ENSSSAG00000005133) #22	ENSSSAG00000103253	ENSSSAG00000093200	ENSSSAG00000042888	ENSSSAG00000042836	anks4b (ENSSSAG00000005160)	ENSSSAG00000005105	ENSSSAG00000005089	uqcrc2a (ENSSSAG00000003539)	ENSSSAG00000110935	ENSSSAG00000118572	ENSSSAG00000105838	ENSSSAG00000119125	ENSSSAG00000100539	mfsd13al (ENSSSAG00000001778)	ENSSSAG00000001781
River trout	MODERN SPECIES	25	cbx4 (ENSSTUG00000044086)	tbc1d16 (ENSSTUG00000044052)	GAA (ENSSTUG00000043789)	ENSSTUG00000043774	ENSSTUG00000043100	tex2 (ENSSTUG00000042832)	ENSSTUG00000042813	axin2 (ENSSTUG00000042652)	cep112 (ENSSTUG00000042265)	ENSSTUG00000042243	ENSSTUG00000042225	ENSSTUG00000042184	CACNG5 (ENSSTUG00000042161)	CYTH3 (ENSSTUG00000040814) #20	ENSSTUG00000040761	RAC1 (ENSSTUG00000040674) #22	ENSSTUG00000040630	DXO (ENSSTUG00000040608)	ENSSTUG00000040522	anks4b (ENSSTUG00000040499)	ENSSTUG00000040482	snu13a (ENSSTUG00000040466)	ENSSTUG00000040464	uqcrc2a (ENSSTUG00000039597)	ENSSTUG00000039575	ENSSTUG00000039559	CDR2 (ENSSTUG00000039499)	mfsd13al (ENSSTUG00000039462)	ENSSTUG00000039457	kdelr2a (ENSSTUG00000039452) #24	ENSSTUG00000039444
Northern pike	MODERN SPECIES	10	AQP8 (ENSELUG00000006113)	aqp8b (ENSELUG00000006091)	cbx8a (ENSELUG00000006062)	cbx4 (ENSELUG00000006022)	tbc1d16 (ENSELUG00000006001)	GAA (ENSELUG00000005981)	ENSELUG00000005957	tex2 (ENSELUG00000005900)	ENSELUG00000030546	axin2 (ENSELUG00000005769)	cep112 (ENSELUG00000005729)	ENSELUG00000001391	CACNG5 (ENSELUG00000005574)	ENSELUG00000030021	ENSELUG00000005558 #20	RAC1 (ENSELUG00000018657) #22	stk19 (ENSELUG00000005487)	DXO (ENSELUG00000005464)	ENSELUG00000005419	anks4b (ENSELUG00000005388)	ENSELUG00000005374	NH2L1 (ENSELUG00000005342)	uqcrc2a (ENSELUG00000005283)	MOSMO (ENSELUG00000005241)	ENSELUG00000000143	SDR42E2 (ENSELUG00000005057)	CDR2 (ENSELUG00000005044)	mfsd13al (ENSELUG00000005021)	ENSELUG00000004992	kdelr2a (ENSELUG00000004976) #24	ENSELUG00000029249
Protacanthopterygii	ANCESTRAL SPECIES	4	ENSGT00510000047886.a.a #8	ENSGT00940000161824 #9	ENSGT00940000165760	ENSGT00940000163144.a.b.d.b	ENSGT00940000163144.a.b.d.a	ENSGT00940000163861.b	ENSGT00390000004713 #12	ENSGT00940000158652	ENSGT00940000177934	ENSGT00940000168282	ENSGT00940000155381 #14	ENSGT00940000157605 #18	ENSGT00840000130004 #17	ENSGT00940000154596.b #19	ENSGT00940000155825.s.b #20	ENSGT00940000153500.a.a.w.b.f #22	ENSGT00390000000237.n	ENSGT00550000074840.r	ENSGT00390000011615.A.b	ENSGT00510000047537	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000160116.a	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT01060000248591.a.a.a.a.a	ENSGT01030000234951	ENSGT00530000063996.a	ENSGT00940000155575.i.a	ENSGT00940000159093
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	19	ENSGT00940000161824.f #9	ENSGT00940000180063	ENSGT00940000165760.a	ENSGT00940000163144.a.b.d.b.b	ENSGT00940000163144.a.b.d.a.a	ENSGT00940000163861.b.e	ENSGT00390000004713.s.b #12	ENSGT00940000158652.j	ENSGT00940000168282	ENSGT00940000155381 #14	ENSGT00940000157605.p #18	ENSGT00840000130004 #17	ENSGT00940000157605.o #18	ENSGT00940000154596.b.c #19	ENSGT00940000155825.s.b.b #20	ENSGT00940000153500.a.a.w.b.f.a #22	ENSGT00550000074840.r	ENSGT00940000154915.`c	ENSGT00390000018266.vd.b	ENSGT00510000047537	ENSGT00950000183157.a.a.a.b.e ##35	ENSGT00940000160116.a.d	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b.f ##35	ENSGT00940000160116.a.c	ENSGT00940000159369.e	ENSGT00520000061927	ENSGT00390000015076.a	ENSGT01060000248591.a.a.a.a.a.d	ENSGT01030000234951.a	ENSGT00940000155575.i.a.c
Huchen	MODERN SPECIES	2674			ENSHHUG00000040420	ENSHHUG00000040836	ENSHHUG00000040841	pvalb9 (ENSHHUG00000040853)	ccz1 (ENSHHUG00000040856) #12	dlgap5 (ENSHHUG00000040867)	rsph10b (ENSHHUG00000040877)	ENSHHUG00000040952 #14	ENSHHUG00000040953 #18	ENSHHUG00000040955	USP42 (ENSHHUG00000040961) #19	ENSHHUG00000040971	CYTH3 (ENSHHUG00000040983) #20	RAC1 (ENSHHUG00000041085) #22	SNU13 (ENSHHUG00000041124)	uqcrc2b (ENSHHUG00000041162)
Salmoninae_a	ANCESTRAL SPECIES	95	ENSGT00390000017961.eb	ENSGT00950000183188.A.b	ENSGT00940000153560.b.b.a.g.h	ENSGT00510000047886.a.a.c #8	ENSGT00940000161824.f #9	ENSGT00940000165760.a	ENSGT00940000163144.a.b.d.b.b.b	ENSGT00940000163144.a.b.d.a.a	ENSGT00940000163861.b.e	ENSGT00390000004713.s.b #12	ENSGT00940000158652.j	ENSGT00940000168282	ENSGT00940000157605.o #18	ENSGT00940000154596.b.c #19	ENSGT00940000155825.s.b.b #20	ENSGT00940000153500.a.a.w.b.f.a #22	ENSGT00550000074840.r.a	ENSGT00940000154915.`c	ENSGT00390000018266.vd.b	ENSGT00510000047537	ENSGT00950000183157.a.a.a.b.e ##35	ENSGT00940000160116.a.d	ENSGT00940000159369.f	ENSGT01050000246227	ENSGT01100000264586.a.a	ENSGT00390000015076.b	ENSGT00940000164855	ENSGT01060000248591.a.a.a.a.a.c	ENSGT01030000234951.b	ENSGT00530000063996.a	ENSGT00940000155575.i.a.d
Salmo	ANCESTRAL SPECIES	31	ENSGT00390000017961.eb	ENSGT00950000183188.A.b.a	ENSGT00940000153560.b.b.a.g.h	ENSGT00510000047886.a.a.c #8	ENSGT00940000161824.f #9	ENSGT00940000165760.a	ENSGT00940000163144.a.b.d.b.b.b	ENSGT00940000163144.a.b.d.a.a	ENSGT00940000163861.b.e	ENSGT00390000004713.s.b #12	ENSGT00940000158652.j	ENSGT00940000168282	ENSGT00940000157605.o #18	ENSGT00940000154596.b.c #19	ENSGT00940000155825.s.b.b #20	ENSGT00940000153500.a.a.w.b.f.a #22	ENSGT00550000074840.r.a	ENSGT00940000154915.`c	ENSGT00390000018266.vd.b	ENSGT00390000011615.A.b.b	ENSGT00510000047537	ENSGT00950000183157.a.a.a.b.e ##35	ENSGT00940000160116.a.d	ENSGT00940000159369.f	ENSGT01050000246227	ENSGT01100000264586.a.a	ENSGT00390000015076.b	ENSGT00940000164855	ENSGT01060000248591.a.a.a.a.a.c	ENSGT01030000234951.b	ENSGT00530000063996.a
River trout	MODERN SPECIES	9	ENSSTUG00000004096	ENSSTUG00000004072	ENSSTUG00000004035	tmem130 (ENSSTUG00000003928)	baiap2l1a (ENSSTUG00000003879)	TECPR1 (ENSSTUG00000003757) #8	bhlha15 (ENSSTUG00000003731) #9	ENSSTUG00000003705	ENSSTUG00000003641	pvalb9 (ENSSTUG00000003630)	ccz1 (ENSSTUG00000003561) #12	rsph10b (ENSSTUG00000003418)	eif2ak1 (ENSSTUG00000003340) #18	ENSSTUG00000003290 #19	CYTH3 (ENSSTUG00000003052) #20	RAC1 (ENSSTUG00000002963) #22	SNU13 (ENSSTUG00000002943)	uqcrc2b (ENSSTUG00000002349)	MOSMO (ENSSTUG00000002302)	TMEM235 (ENSSTUG00000002106)	birc5a (ENSSTUG00000049783)	fscn2b (ENSSTUG00000049782) ##35	BAHCC1 (ENSSTUG00000049776)	ENSSTUG00000049770	SLC38A10 (ENSSTUG00000049763)	ENSSTUG00000049761	ENSSTUG00000049759	TEPSIN (ENSSTUG00000049757)	ENSSTUG00000049751	nptx2b (ENSSTUG00000049749)	AMZ2 (ENSSTUG00000049741)
Atlantic salmon	MODERN SPECIES		tmem130 (ENSSSAG00000119219)	tmem130 (ENSSSAG00000111828)	baiap2l1a (ENSSSAG00000000468)	ENSSSAG00000000536 #8	bhlha15 (ENSSSAG00000082587) #9	ENSSSAG00000096533	ENSSSAG00000114464	pvalb9 (ENSSSAG00000000643)	ccz1 (ENSSSAG00000000659) #12	dlgap5 (ENSSSAG00000000679)	rsph10b (ENSSSAG00000000698)	ENSSSAG00000000727 #14	eif2ak1 (ENSSSAG00000000739) #18	USP42 (ENSSSAG00000110357) #19	ENSSSAG00000000874 #20	RAC1 (ENSSSAG00000001101) #22	ENSSSAG00000114177	ENSSSAG00000001125	ENSSSAG00000001266	ENSSSAG00000104580	BIRC5 (ENSSSAG00000001277)	fscn2b (ENSSSAG00000001287) ##35	BAHCC1 (ENSSSAG00000001301)	SLC38A10 (ENSSSAG00000001360)	ENSSSAG00000100770	TEPSIN (ENSSSAG00000001496)	ENSSSAG00000001501	ENSSSAG00000001503	ENSSSAG00000088837	AMZ2 (ENSSSAG00000001511)	SLC16A6 (ENSSSAG00000001513)
Oncorhynchus	ANCESTRAL SPECIES	17	ENSGT00950000182951.A.a.a.c.a.a.b	ENSGT00390000017961.eb	ENSGT00950000183188.A.b	ENSGT00940000153560.b.b.a.g.h	ENSGT00510000047886.a.a.c #8	ENSGT00940000161824.f #9	ENSGT00940000180063	ENSGT00940000163144.a.b.d.a.a	ENSGT00940000163861.b.e	ENSGT00390000004713.s.b #12	ENSGT00940000158652.j	ENSGT00940000168282	ENSGT00940000157605.o #18	ENSGT00940000154596.b.c #19	ENSGT00940000155825.s.b.b #20	ENSGT00940000153500.a.a.w.b.f.a #22	ENSGT00550000074840.r.a	ENSGT00940000154915.`c	ENSGT00390000018266.vd.b	ENSGT00510000047537	ENSGT00950000183157.a.a.a.b.e ##35	ENSGT00940000160116.a.d	ENSGT00940000159369.f	ENSGT01050000246227	ENSGT00390000015076.b	ENSGT00940000164855	ENSGT01060000248591.a.a.a.a.a.c	ENSGT01030000234951.b	ENSGT00530000063996.a	ENSGT00940000155575.i.a.d	ENSGT00940000156833.a.a.a
Rainbow trout	MODERN SPECIES	15	baiap2l1a (ENSOMYG00000021863)	ENSOMYG00000021890 #8	ENSOMYG00000048027	bhlha15 (ENSOMYG00000021913) #9	ENSOMYG00000071239	ENSOMYG00000021931	ENSOMYG00000021942	pvalb9 (ENSOMYG00000021952)	ENSOMYG00000074390	rsph10b (ENSOMYG00000022003)	ENSOMYG00000074146	ENSOMYG00000022104 #18	USP42 (ENSOMYG00000022216) #19	ENSOMYG00000022487 #20	ENSOMYG00000055390	RAC1 (ENSOMYG00000022518) #22	ENSOMYG00000022551	ENSOMYG00000022817	ENSOMYG00000024521	birc5a (ENSOMYG00000024558)	fscn2b (ENSOMYG00000024585) ##35	BAHCC1 (ENSOMYG00000050746)	ENSOMYG00000059601	ENSOMYG00000068323	SLC38A10 (ENSOMYG00000024641)	ENSOMYG00000056705	ENSOMYG00000024708	TEPSIN (ENSOMYG00000024676)	ENSOMYG00000024742	ENSOMYG00000063962	ENSOMYG00000024773
Oncorhynchus_a	ANCESTRAL SPECIES	13	ENSGT00940000162800.f	ENSGT00950000182951.A.a.a.c.a.a.b	ENSGT00390000017961.eb	ENSGT00950000183188.A.b	ENSGT00940000153560.b.b.a.g.h	ENSGT00510000047886.a.a.c #8	ENSGT00940000161824.f #9	ENSGT00940000163144.a.b.d.a.a	ENSGT00940000163861.b.e	ENSGT00390000004713.s.b #12	ENSGT00940000158652.j	ENSGT00940000168282	ENSGT00940000157605.o #18	ENSGT00940000154596.b.c #19	ENSGT00940000155825.s.b.b #20	ENSGT00940000153500.a.a.w.b.f.a #22	ENSGT00550000074840.r.a	ENSGT00940000154915.`c	ENSGT00390000018266.vd.b	ENSGT00510000047537	ENSGT00950000183157.a.a.a.b.e ##35	ENSGT00940000160116.a.d	ENSGT00940000159369.f	ENSGT01050000246227	ENSGT00390000015076.b	ENSGT00940000164855	ENSGT01060000248591.a.a.a.a.a.c	ENSGT01030000234951.b	ENSGT00530000063996.a	ENSGT00940000155575.i.a.d	ENSGT00940000156833.a.a.a
Chinook salmon	MODERN SPECIES		tmem130 (ENSOTSG00005028633)	baiap2l1a (ENSOTSG00005028634)	TECPR1 (ENSOTSG00005028636) #8	bhlha15 (ENSOTSG00005028722) #9	ENSOTSG00005028730	ENSOTSG00005028733	pvalb9 (ENSOTSG00005028737)	ccz1 (ENSOTSG00005028741) #12	dlgap5 (ENSOTSG00005028751)	rsph10b (ENSOTSG00005028759)	ENSOTSG00005028760 #14	eif2ak1 (ENSOTSG00005028761) #18	USP42 (ENSOTSG00005028811) #19	CYTH3 (ENSOTSG00005028816) #20	ENSOTSG00005028820	RAC1 (ENSOTSG00005028826) #22	uqcrc2b (ENSOTSG00005028837)	SNU13 (ENSOTSG00005032352)	ENSOTSG00005024726	birc5a (ENSOTSG00005024728)	ENSOTSG00005024823	ENSOTSG00005024824	prdm9 (ENSOTSG00005024825)	PPP1R9B (ENSOTSG00005024828)	PPP1R9B (ENSOTSG00005024830)	lsm12b (ENSOTSG00005024833)	coa3a (ENSOTSG00005024836)	ENSOTSG00005024838	vps25 (ENSOTSG00005024839)	ENSOTSG00005024840	ppm1g (ENSOTSG00005024842)
Coho salmon	MODERN SPECIES	2	FAM20C (ENSOKIG00005006904)	ENSOKIG00005006818	tmem130 (ENSOKIG00005006751)	baiap2l1a (ENSOKIG00005006714)	TECPR1 (ENSOKIG00005006648) #8	bhlha15 (ENSOKIG00005006636) #9	ENSOKIG00005006602	pvalb9 (ENSOKIG00005006583)	ENSOKIG00005006564	ccz1 (ENSOKIG00005006495) #12	ENSOKIG00005006463	rsph10b (ENSOKIG00005006447)	ENSOKIG00005006324 #18	USP42 (ENSOKIG00005006297) #19	CYTH3 (ENSOKIG00005004191) #20	RAC1 (ENSOKIG00005003977) #22	SNU13 (ENSOKIG00005003961)	UQCRC2 (ENSOKIG00005003880)	ENSOKIG00005003856	birc5a (ENSOKIG00005003843)	ENSOKIG00005003837	fscn2b (ENSOKIG00005003832) ##35	BAHCC1 (ENSOKIG00005003815)	SLC38A10 (ENSOKIG00005003794)	ENSOKIG00005003784	TEPSIN (ENSOKIG00005003767)	ENSOKIG00005003755	nptx2b (ENSOKIG00005003748)	ENSOKIG00005003738	AMZ2 (ENSOKIG00005003731)	SLC16A6 (ENSOKIG00005003722)
Salmoninae	ANCESTRAL SPECIES	922														ENSGT00940000154596.b.d #19	ENSGT00940000155825.s.b.a #20	ENSGT00940000153500.a.a.w.b.f.b #22	ENSGT00390000000237.n	ENSGT00940000154915.ac	ENSGT00390000018266.vd.a	ENSGT00390000011615.A.b
Salmoninae_a	ANCESTRAL SPECIES	38	ENSGT00390000017961.db	ENSGT00940000169563	ENSGT00940000153560.b.b.a.g.g	ENSGT00510000047886.a.a.d #8	ENSGT00940000161824.e #9	ENSGT00940000165760.b	ENSGT00940000163144.a.b.d.b.a	ENSGT00940000163861.b.f	ENSGT00390000004713.s.a #12	ENSGT00940000158652.i	ENSGT00940000155381 #14	ENSGT00940000157605.p #18	ENSGT00840000130004 #17	ENSGT00940000154596.b.d #19	ENSGT00940000155825.s.b.a #20	ENSGT00940000153500.a.a.w.b.f.b #22	ENSGT00390000000237.n	ENSGT00550000074840.r.b	ENSGT00940000154915.ac	ENSGT00390000018266.vd.a	ENSGT00390000011615.A.b	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b.f ##35	ENSGT00940000160116.a.c	ENSGT00940000159369.e	ENSGT00520000061927.i	ENSGT00520000061927.j	ENSGT00390000015076.a	ENSGT01060000248591.a.a.a.a.a.d	ENSGT01030000234951.a	ENSGT00940000155575.i.a.c
Salmo	ANCESTRAL SPECIES	38	ENSGT00390000017961.db	ENSGT00940000169563	ENSGT00940000153560.b.b.a.g.g	ENSGT00510000047886.a.a.d #8	ENSGT00940000161824.e #9	ENSGT00940000165760.b	ENSGT00940000163144.a.b.d.b.a	ENSGT00940000163861.b.f	ENSGT00390000004713.s.a #12	ENSGT00940000158652.i	ENSGT00940000155381 #14	ENSGT00940000157605.p #18	ENSGT00840000130004 #17	ENSGT00940000154596.b.d #19	ENSGT00940000155825.s.b.a #20	ENSGT00940000153500.a.a.w.b.f.b #22	ENSGT00390000000237.n	ENSGT00550000074840.r.b	ENSGT00940000154915.ac	ENSGT00390000018266.vd.a	ENSGT00390000011615.A.b.a	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b.f ##35	ENSGT00940000160116.a.c	ENSGT00940000159369.e	ENSGT00520000061927.i	ENSGT00520000061927.j	ENSGT00390000015076.a	ENSGT01060000248591.a.a.a.a.a.d	ENSGT01030000234951.a	ENSGT00940000155575.i.a.c
River trout	MODERN SPECIES	1	trrap (ENSSTUG00000001511)	ENSSTUG00000001619	baiap2l1a (ENSSTUG00000001629)	TECPR1 (ENSSTUG00000001710) #8	bhlha15 (ENSSTUG00000001840) #9	ENSSTUG00000001847	ENSSTUG00000001874	pvalb9 (ENSSTUG00000001906)	ccz1 (ENSSTUG00000001954) #12	dlgap5 (ENSSTUG00000002012)	PMS2 (ENSSTUG00000002049) #14	eif2ak1 (ENSSTUG00000002096) #18	ANKRD61 (ENSSTUG00000002139) #17	USP42 (ENSSTUG00000002173) #19	ENSSTUG00000002228 #20	RAC1 (ENSSTUG00000002263) #22	crym (ENSSTUG00000002292)	uqcrc2b (ENSSTUG00000002505)	ENSSTUG00000003831	TMEM235 (ENSSTUG00000003839)	FAAP100 (ENSSTUG00000003852)	fscn2b (ENSSTUG00000003901) ##35	BAHCC1 (ENSSTUG00000003935)	SLC38A10 (ENSSTUG00000003997)	ndufaf8 (ENSSTUG00000004107)	ndufaf8 (ENSSTUG00000004126)	TEPSIN (ENSSTUG00000004183)	nptx2b (ENSSTUG00000004220)	ENSSTUG00000004237	SLC16A6 (ENSSTUG00000004244)	arsg (ENSSTUG00000004270)
Atlantic salmon	MODERN SPECIES	20	baiap2l1a (ENSSSAG00000055032)	ENSSSAG00000095672	ENSSSAG00000055118 #8	bhlha15 (ENSSSAG00000112616) #9	prvt (ENSSSAG00000056172)	pvalb2 (ENSSSAG00000056178)	prvb (ENSSSAG00000096683)	pvalb9 (ENSSSAG00000056189)	ccz1 (ENSSSAG00000056221) #12	dlgap5 (ENSSSAG00000057319)	pms2 (ENSSSAG00000057358) #14	eif2ak1 (ENSSSAG00000057390) #18	ENSSSAG00000057472 #17	USP42 (ENSSSAG00000057498) #19	cyth3 (ENSSSAG00000042759) #20	RAC1 (ENSSSAG00000120819) #22	ENSSSAG00000057768	NH2L1 (ENSSSAG00000057799)	UQCRC2 (ENSSSAG00000057946)	ENSSSAG00000058531	ENSSSAG00000058540	faap100 (ENSSSAG00000058550)	fscn2 (ENSSSAG00000058557) ##35	BAHCC1 (ENSSSAG00000058579)	slc38a10 (ENSSSAG00000058608)	ndufaf8 (ENSSSAG00000058945)	ENSSSAG00000042103	SLC16A6 (ENSSSAG00000042142)	arsg (ENSSSAG00000042159)	WIPI1 (ENSSSAG00000042286)	prkar1ab (ENSSSAG00000117050)
Oncorhynchus	ANCESTRAL SPECIES	23	ENSGT00940000153560.b.b.a.g.g	ENSGT00510000047886.a.a.d #8	ENSGT00940000161824.e #9	ENSGT00940000165760.b	ENSGT00940000163144.a.b.d.b.a	ENSGT00940000163144.b	ENSGT00940000163144.a.b.d.b.b.a	ENSGT00940000163861.b.f	ENSGT00390000004713.s.a #12	ENSGT00940000158652.i	ENSGT00940000155381 #14	ENSGT00940000157605.p #18	ENSGT00840000130004 #17	ENSGT00940000154596.b.d #19	ENSGT00940000155825.s.b.a #20	ENSGT00940000153500.a.a.w.b.f.b #22	ENSGT00390000000237.n	ENSGT00550000074840.r.b	ENSGT00940000154915.ac	ENSGT00390000018266.vd.a	ENSGT00390000011615.A.b	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b.f ##35	ENSGT00940000160116.a.c	ENSGT00940000159369.e	ENSGT00520000061927.i	ENSGT00520000061927.j	ENSGT01060000248591.a.a.a.a.a.d	ENSGT01030000234951.a	ENSGT00940000155575.i.a.c	ENSGT00940000159093
Rainbow trout	MODERN SPECIES	12	trrap (ENSOMYG00000035280)	baiap2l1a (ENSOMYG00000035549)	ENSOMYG00000035612 #8	bhlha15 (ENSOMYG00000076413) #9	ENSOMYG00000077134	ENSOMYG00000035703	pvalb9 (ENSOMYG00000035730)	ccz1 (ENSOMYG00000035783) #12	dlgap5 (ENSOMYG00000035863)	ENSOMYG00000035947 #14	ENSOMYG00000059635	eif2ak1 (ENSOMYG00000036014) #18	ENSOMYG00000036057 #17	USP42 (ENSOMYG00000036072) #19	ENSOMYG00000036115 #20	RAC1 (ENSOMYG00000036142) #22	ENSOMYG00000036167	ENSOMYG00000036196	UQCRC2 (ENSOMYG00000036648)	ENSOMYG00000038678	ENSOMYG00000038684	FAAP100 (ENSOMYG00000038693)	fscn2b (ENSOMYG00000038713) ##35	ENSOMYG00000017822	BAHCC1 (ENSOMYG00000071984)	ENSOMYG00000071915	ENSOMYG00000054668	SLC38A10 (ENSOMYG00000035117)	ndufaf8 (ENSOMYG00000050945)	ndufaf8 (ENSOMYG00000035184)	ENSOMYG00000035197
Oncorhynchus_a	ANCESTRAL SPECIES	18	ENSGT00940000162800.e	ENSGT00950000182951.A.a.a.c.a.a.a	ENSGT00390000017961.db	ENSGT00940000153560.b.b.a.g.g	ENSGT00510000047886.a.a.d #8	ENSGT00940000161824.e #9	ENSGT00940000163144.b	ENSGT00940000163144.a.b.d.b.b.a	ENSGT00940000163861.b.f	ENSGT00390000004713.s.a #12	ENSGT00940000158652.i	ENSGT00940000155381 #14	ENSGT00940000157605.p #18	ENSGT00840000130004 #17	ENSGT00940000155825.s.b.a #20	ENSGT00940000153500.a.a.w.b.f.b #22	ENSGT00390000000237.n	ENSGT00550000074840.r.b	ENSGT00940000154915.ac	ENSGT00390000018266.vd.a	ENSGT00390000011615.A.b	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b.f ##35	ENSGT00940000160116.a.c	ENSGT00940000159369.e	ENSGT00520000061927.i	ENSGT01060000248591.a.a.a.a.a.d	ENSGT01030000234951.a	ENSGT00940000155575.i.a.c	ENSGT00940000159093	ENSGT00940000156833.a.a.b
Coho salmon	MODERN SPECIES	17	atpaf2 (ENSOKIG00005009428)	tom1l2 (ENSOKIG00005009452)	foxl3 (ENSOKIG00005009468)	FAM20C (ENSOKIG00005009476)	trrap (ENSOKIG00005009539)	baiap2l1a (ENSOKIG00005009677)	TECPR1 (ENSOKIG00005009741) #8	ENSOKIG00005009795	pvalb9 (ENSOKIG00005009856)	ccz1 (ENSOKIG00005009871) #12	dlgap5 (ENSOKIG00005009969)	PMS2 (ENSOKIG00005010008) #14	eif2ak1 (ENSOKIG00005010155) #18	ANKRD61 (ENSOKIG00005010166) #17	ENSOKIG00005010187 #20	ENSOKIG00005010246 #22	crym (ENSOKIG00005010284)	SNU13 (ENSOKIG00005010302)	uqcrc2b (ENSOKIG00005010405)	ENSOKIG00005010541	MOSMO (ENSOKIG00005010553)	TMEM235 (ENSOKIG00005010561)	ENSOKIG00005010570	FAAP100 (ENSOKIG00005010579)	fscn2b (ENSOKIG00005010585) ##35	ENSOKIG00005010596	BAHCC1 (ENSOKIG00005010601)	SLC38A10 (ENSOKIG00005010616)	ndufaf8 (ENSOKIG00005010643)	ENSOKIG00005010648	NPTX2 (ENSOKIG00005010656)
Chinook salmon	MODERN SPECIES	17	ENSOTSG00005003109	ENSOTSG00005003116	trrap (ENSOTSG00005003157)	baiap2l1a (ENSOTSG00005003290)	TECPR1 (ENSOTSG00005003305) #8	bhlha15 (ENSOTSG00005003375) #9	ENSOTSG00005003377	ENSOTSG00005003382	pvalb9 (ENSOTSG00005003387)	ccz1 (ENSOTSG00005003400) #12	dlgap5 (ENSOTSG00005003445)	PMS2 (ENSOTSG00005003453) #14	eif2ak1 (ENSOTSG00005003510) #18	ANKRD61 (ENSOTSG00005003514) #17	ENSOTSG00005003522 #20	ENSOTSG00005003638 #22	crym (ENSOTSG00005003640)	SNU13 (ENSOTSG00005003645)	uqcrc2b (ENSOTSG00005003676)	ENSOTSG00005003690	MOSMO (ENSOTSG00005003693)	TMEM235 (ENSOTSG00005003695)	FAAP100 (ENSOTSG00005003696)	fscn2b (ENSOTSG00005003698) ##35	ENSOTSG00005003702	SLC38A10 (ENSOTSG00005003716)	ndufaf8 (ENSOTSG00005003732)	nptx2b (ENSOTSG00005003733)	ENSOTSG00005003735	ENSOTSG00005003738	SLC16A6 (ENSOTSG00005003740)
Huchen	MODERN SPECIES	2321																ENSHHUG00000045031 #22	crym (ENSHHUG00000044946)	uqcrc2b (ENSHHUG00000044751)	ENSHHUG00000044743	MOSMO (ENSHHUG00000044737)	TMEM235 (ENSHHUG00000044730)	ENSHHUG00000044725	ENSHHUG00000044715	fscn2b (ENSHHUG00000044642) ##35	ENSHHUG00000044640
Northern pike	MODERN SPECIES	4	FAM20C (ENSELUG00000018434)	trrap (ENSELUG00000018399)	tmem130 (ENSELUG00000018248)	baiap2l1a (ENSELUG00000018225)	TECPR1 (ENSELUG00000018176) #8	bhlha15 (ENSELUG00000018136) #9	ENSELUG00000018123	pvalb9 (ENSELUG00000018074)	ccz1 (ENSELUG00000018040) #12	dlgap5 (ENSELUG00000017952)	rsph10b (ENSELUG00000017896)	PMS2 (ENSELUG00000017866) #14	eif2ak1 (ENSELUG00000017836) #18	ANKRD61 (ENSELUG00000017796) #17	ENSELUG00000000716 #20	ENSELUG00000017708 #22	crym (ENSELUG00000017653)	SNU13 (ENSELUG00000000695)	uqcrc2b (ENSELUG00000017601)	MOSMO (ENSELUG00000034443)	TMEM235 (ENSELUG00000017523)	birc5a (ENSELUG00000017511)	FAAP100 (ENSELUG00000017501)	fscn2b (ENSELUG00000017492) ##35	BAHCC1 (ENSELUG00000000679)	ENSELUG00000034344	SLC38A10 (ENSELUG00000017409)	ndufaf8 (ENSELUG00000017370)	TEPSIN (ENSELUG00000017357)	nptx2b (ENSELUG00000017350)	SLC16A6 (ENSELUG00000017329)
Otomorpha	DUPLICATION
Otomorpha	ANCESTRAL SPECIES	98	ENSGT00940000158476.b	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355	ENSGT00390000013973.B.g.b	ENSGT00980000202148	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000170309	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.o #20	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b.g #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00940000166251
Otophysi	ANCESTRAL SPECIES	97	ENSGT00940000166332	ENSGT00940000158204.c	ENSGT00550000075065.a	ENSGT00940000160070.b.a.a	ENSGT00390000013973.B.g.b	ENSGT00980000202148	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000170309	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.o #20	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b.g #22	ENSGT00390000018295	ENSGT00920000149199	ENSGT00390000004428.a.a	ENSGT00390000007463	ENSGT00940000161116.w.a	ENSGT00390000017548.b.a	ENSGT00940000156691	ENSGT00390000003070.a.a	ENSGT01090000260240	ENSGT00940000160116.b	ENSGT00950000182960.a.b ##36	ENSGT00950000183157.a.a.a.a ##35	ENSGT00510000047537.wb.a	ENSGT00390000011615.A.a	ENSGT00940000159620.b.b.f
Characiphysae	ANCESTRAL SPECIES	33	ENSGT00940000166332	ENSGT00940000158204.c	ENSGT00940000164753.a	ENSGT00550000075065.a	ENSGT00940000160070.b.a.a	ENSGT00390000013973.B.g.b	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000170309	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.o #20	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b.g #22	ENSGT00390000018295	ENSGT00920000149199.a.a	ENSGT00920000149199.a.b	ENSGT00390000004428.a.a	ENSGT00390000007463	ENSGT00940000161116.w.a	ENSGT00390000017548.b.a	ENSGT00940000156691	ENSGT00390000003070.a.a	ENSGT01090000260240	ENSGT00940000160116.b	ENSGT00950000182960.a.b ##36	ENSGT00950000183157.a.a.a.a ##35	ENSGT00510000047537.wb.a	ENSGT00390000011615.A.a
Channel catfish	MODERN SPECIES	11	ENSIPUG00000011303	ENSIPUG00000011284	stk31 (ENSIPUG00000011257)	ENSIPUG00000011250	PCYT2 (ENSIPUG00000011220)	mafga (ENSIPUG00000011184)	ENSIPUG00000011174	ern1 (ENSIPUG00000011083)	tex2 (ENSIPUG00000011010)	axin2 (ENSIPUG00000010952)	cep112 (ENSIPUG00000010800)	ENSIPUG00000010688	CACNG5 (ENSIPUG00000010655)	CYTH3 (ENSIPUG00000010607) #20	SMIM10L2A (ENSIPUG00000010590)	Rac1 (ENSIPUG00000010564) #22	stk19 (ENSIPUG00000010551)	ENSIPUG00000010534	zgc:112148 (ENSIPUG00000010436)	ENSIPUG00000010423	TRIM16 (ENSIPUG00000010410)	Ush1g (ENSIPUG00000010382)	Otop2 (ENSIPUG00000010361)	HID1 (ENSIPUG00000010312)	ENSIPUG00000010248	fscn2a (ENSIPUG00000010231) ##35	BIRC5 (ENSIPUG00000010212)	ENSIPUG00000010186	socs3a (ENSIPUG00000010164)	cyth1a (ENSIPUG00000010075)	USP36 (ENSIPUG00000010006)
Characiphysae_b	ANCESTRAL SPECIES	24	ENSGT00940000166332	ENSGT00940000158204.c	ENSGT00940000164753.a	ENSGT00550000075065.a	ENSGT00940000160070.b.a.a	ENSGT00390000013973.B.g.b	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000170309	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.o #20	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b.g #22	ENSGT00390000018295	ENSGT00920000149199.b	ENSGT00920000149199.a.b	ENSGT00390000004428.a.a	ENSGT00390000007463	ENSGT00940000161116.w.a	ENSGT00390000017548.b.a	ENSGT00940000156691	ENSGT00390000003070.a.a	ENSGT01090000260240	ENSGT00940000160116.b	ENSGT00950000182960.a.b ##36	ENSGT00950000183157.a.a.a.a ##35	ENSGT00510000047537.wb.a	ENSGT00390000011615.A.a
Characoidei	ANCESTRAL SPECIES	61					ENSGT00550000075065.a	ENSGT00940000160070.b.a.a	ENSGT00390000013973.B.g.b	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.o #20	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b.g #22	ENSGT00390000018295	ENSGT00920000149199.a.a	ENSGT00920000149199.b	ENSGT00920000149199.a.b	ENSGT00390000004428.a.a	ENSGT00390000007463	ENSGT00940000161116.w.a	ENSGT00390000017548.b.a	ENSGT00940000156691	ENSGT00390000003070.a.a	ENSGT01090000260240	ENSGT00940000160116.b	ENSGT00950000182960.a.b ##36	ENSGT00950000183157.a.a.a.a ##35	ENSGT00510000047537.wb.a
Red-bellied piranha	MODERN SPECIES	226				PCYT2 (ENSPNAG00000004540)	PCYT2 (ENSPNAG00000005232)	mafga (ENSPNAG00000004569)	ENSPNAG00000004574	ENSPNAG00000029447	tex2 (ENSPNAG00000029584)	axin2 (ENSPNAG00000029624)	cep112 (ENSPNAG00000005004)	ENSPNAG00000029694	CACNG5 (ENSPNAG00000029702)	CYTH3 (ENSPNAG00000029717) #20	SMIM10L2A (ENSPNAG00000029723)	rac1b (ENSPNAG00000029731) #22	stk19 (ENSPNAG00000029736)	ENSPNAG00000029743	ENSPNAG00000029750	zgc:112148 (ENSPNAG00000029757)	ENSPNAG00000029763	ENSPNAG00000029769	USH1G (ENSPNAG00000006583)	OTOP2 (ENSPNAG00000029777)	HID1 (ENSPNAG00000009054)	ENSPNAG00000009094	BAHCC1 (ENSPNAG00000009135)	ENSPNAG00000009149 ##36	fscn2a (ENSPNAG00000009170) ##35	ENSPNAG00000009182	ENSPNAG00000009196
Mexicana tetra	MODERN SPECIES	22	TULP3 (ENSAMXG00000012132)	ENSAMXG00000012128	ENSAMXG00000029442	ENSAMXG00000000944	ENSAMXG00000000988	mafga (ENSAMXG00000025192)	PCYT2 (ENSAMXG00000031069)	tex2 (ENSAMXG00000037473)	axin2 (ENSAMXG00000010744)	cep112 (ENSAMXG00000029806)	ENSAMXG00000033891	CACNG5 (ENSAMXG00000030879)	CYTH3 (ENSAMXG00000031012) #20	SMIM10 (ENSAMXG00000024990)	ENSAMXG00000041622	rac1b (ENSAMXG00000033091) #22	stk19 (ENSAMXG00000031954)	ENSAMXG00000038491	ENSAMXG00000037651	ENSAMXG00000043430	zgc:112148 (ENSAMXG00000040496)	ENSAMXG00000025096	ENSAMXG00000030443	USH1G (ENSAMXG00000040029)	OTOP2 (ENSAMXG00000013500)	HID1 (ENSAMXG00000036579)	ENSAMXG00000033810	ENSAMXG00000042707	BAHCC1 (ENSAMXG00000042322)	ENSAMXG00000043368	fscn2a (ENSAMXG00000036541) ##35
Electric eel	MODERN SPECIES	101	ENSEEEG00000001438	ENSEEEG00000001436	ENSEEEG00000001435	PCYT2 (ENSEEEG00000001425)	mafga (ENSEEEG00000001421)	ENSEEEG00000001420	ENSEEEG00000000999	tex2 (ENSEEEG00000000910)	ENSEEEG00000000905	axin2 (ENSEEEG00000000904)	cep112 (ENSEEEG00000000836)	ENSEEEG00000000776	ENSEEEG00000000762	CYTH3 (ENSEEEG00000000671) #20	SMIM10L2A (ENSEEEG00000000661)	rac1b (ENSEEEG00000000382) #22	stk19 (ENSEEEG00000000305)	cavin2b (ENSEEEG00000000303)	nabp1b (ENSEEEG00000000289)	ENSEEEG00000000263	TSPEAR (ENSEEEG00000000238)	ube2g2 (ENSEEEG00000000229)	cep20 (ENSEEEG00000000217)	ENSEEEG00000000203
Cyprinoidei	ANCESTRAL SPECIES	120			ENSGT00630000089884.A.k.a	ENSGT00940000164753.a	ENSGT00550000075065.a	ENSGT00940000160070.b.a.a	ENSGT00390000013973.B.g.b	ENSGT00940000165054.D	ENSGT00390000000463.b	ENSGT00940000157338.b	ENSGT00390000006544	ENSGT00940000156104.A	ENSGT01050000244961.a.a.b	ENSGT00940000155825.o #20	ENSGT00390000014547	ENSGT00940000153500.a.a.w.b.g #22	ENSGT00390000018295	ENSGT00920000149199.c	ENSGT00920000149199.d	ENSGT00390000004428.a.a	ENSGT00390000007463	ENSGT00390000017548.b.a	ENSGT00940000156691	ENSGT00390000003070.a.a	ENSGT01090000260240	ENSGT00940000160116.b	ENSGT00950000183157.a.a.a.a ##35	ENSGT00390000011615.A.a	ENSGT00940000159620.b.b.f	ENSGT00940000157519.b.b	ENSGT00940000157948.D
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	247	ENSGT00940000160070.b.a.a.a	ENSGT00390000013973.B.g.b.bb	ENSGT00980000202148	ENSGT00940000165054.D.b	ENSGT00390000000463.b.a	ENSGT00940000157338.b.b	ENSGT00390000006544.c.a	ENSGT00940000156104.A.b	ENSGT01050000244961.a.a.b.r	ENSGT00940000155825.o.d #20	ENSGT00390000014547.f	ENSGT00940000153500.a.a.w.b.g.b #22	ENSGT00390000018295.b	ENSGT00920000149199.c.a	ENSGT01060000253527	ENSGT00940000153500.a.a.w.b.g.a #22	ENSGT00390000018295.a	ENSGT00920000149199.c.b	ENSGT00920000149199.d	ENSGT00390000004428.a.a	ENSGT00390000007463	ENSGT00390000017548.b.a.b	ENSGT00940000156691.v	ENSGT00390000003070.a.a.a.a	ENSGT01090000260240.a.a	ENSGT00390000003070.a.a.b	ENSGT00940000160116.b.a	ENSGT00950000183157.a.a.a.a.b ##35	ENSGT00390000011615.A.a.a	ENSGT00940000159620.b.b.f.b	ENSGT00940000157519.b.b.l
Goldfish	MODERN SPECIES	20	rnf213a (ENSCARG00000024062)	ENSCARG00000024013	ENSCARG00000023980	PCYT2 (ENSCARG00000022833)	ENSCARG00000022783	mafga (ENSCARG00000022776)	ENSCARG00000019820	tex2 (ENSCARG00000019372)	axin2 (ENSCARG00000019339)	cep112 (ENSCARG00000019213)	ENSCARG00000019028	CACNG5 (ENSCARG00000019001)	CYTH3 (ENSCARG00000018947) #20	ENSCARG00000018929	ENSCARG00000018924	RAC1 (ENSCARG00000018893) #22	STK19 (ENSCARG00000018884)	ENSCARG00000018872	zgc:112148 (ENSCARG00000018862)	ENSCARG00000018856	USH1G (ENSCARG00000018849)	OTOP2 (ENSCARG00000018829)	HID1 (ENSCARG00000018558)	ENSCARG00000018525	BAHCC1 (ENSCARG00000018488)	fscn2a (ENSCARG00000018467) ##35	ENSCARG00000018445	TMEM235 (ENSCARG00000018435)	socs3a (ENSCARG00000018425)	cyth1a (ENSCARG00000018349)	ENSCARG00000018326
Cyprininae_a	ANCESTRAL SPECIES	291		ENSGT00940000164753.a	ENSGT00550000075065.a.d	ENSGT00940000160070.b.a.a.a	ENSGT00390000013973.B.g.b.bb	ENSGT00980000202148	ENSGT00940000165054.D.b	ENSGT00390000000463.b.a	ENSGT00940000157338.b.b	ENSGT00390000006544.c.a	ENSGT00940000156104.A.b	ENSGT01050000244961.a.a.b.r	ENSGT00940000155825.o.d #20	ENSGT00390000014547.f	ENSGT00940000153500.a.a.w.b.g.b #22	ENSGT00940000153500.a.a.w.b.g.a #22	ENSGT00390000018295.a	ENSGT00920000149199.c.b	ENSGT00390000004428.a.a	ENSGT00390000007463	ENSGT00390000017548.b.a.b	ENSGT00940000156691.v	ENSGT00390000003070.a.a.b	ENSGT00940000160116.b.a	ENSGT00950000183157.a.a.a.a.b ##35	ENSGT00390000011615.A.a.a	ENSGT00940000159620.b.b.f.b	ENSGT00940000157519.b.b.l	ENSGT01100000263529.a.a.a.a.a.a.a.b.b.b.a.b.a.a.a.b.b.b.b	ENSGT00940000157948.D.e	ENSGT00940000158348.e.b.a
Common carp reference	MODERN SPECIES	1	ENSCCRG00000070729	ENSCCRG00000056215	ENSCCRG00000057597	ENSCCRG00000017901	ENSCCRG00000003896	ENSCCRG00000002429	mafga (ENSCCRG00000068135)	ENSCCRG00000009767	ENSCCRG00000001437	axin2 (ENSCCRG00000008741)	cep112 (ENSCCRG00000079763)	ENSCCRG00000048216	CACNG5 (ENSCCRG00000041088)	ENSCCRG00000041108 #20	ENSCCRG00000005819	ENSCCRG00000041119 #22	stk19 (ENSCCRG00000080146)	ENSCCRG00000041137	OTOP2 (ENSCCRG00000049120)	zgc:112148 (ENSCCRG00000049123)	USH1G (ENSCCRG00000056889)	ENSCCRG00000048616	ENSCCRG00000003205	ENSCCRG00000078784	fscn2a (ENSCCRG00000042007) ##35	ENSCCRG00000058740	ENSCCRG00000036956	ENSCCRG00000016861	socs3a (ENSCCRG00000069024)	cyth1a (ENSCCRG00000066658)	ENSCCRG00000038880
Golden-line barbel	MODERN SPECIES	573			ENSSGRG00000017011	ENSSGRG00000017012	mafga (ENSSGRG00000017014)	ENSSGRG00000017016	ENSSGRG00000017017	ENSSGRG00000017018	tex2 (ENSSGRG00000017435)	axin2 (ENSSGRG00000017437)	cep112 (ENSSGRG00000017443)	ENSSGRG00000017519	CACNG5 (ENSSGRG00000020997)	CYTH3 (ENSSGRG00000021004) #20	ENSSGRG00000021186	rac1b (ENSSGRG00000021190) #22	STK19 (ENSSGRG00000021328)	zgc:112148 (ENSSGRG00000021331)	ENSSGRG00000021333	USH1G (ENSSGRG00000021336)	ENSSGRG00000021338	HID1 (ENSSGRG00000021366)	ENSSGRG00000021714	fscn2a (ENSSGRG00000021716) ##35	socs3a (ENSSGRG00000021718)	cyth1a (ENSSGRG00000021720)
Cyprininae	ANCESTRAL SPECIES	247		ENSGT00630000089884.A.k.a	ENSGT00940000164753.a	ENSGT00550000075065.a.d	ENSGT00940000160070.b.a.a.a	ENSGT00390000013973.B.g.b.bb	ENSGT00980000202148	ENSGT00940000165054.D.b	ENSGT00390000000463.b.a	ENSGT00940000157338.b.b	ENSGT00390000006544.c.a	ENSGT00940000156104.A.b	ENSGT01050000244961.a.a.b.r	ENSGT00940000155825.o.d #20	ENSGT00390000014547.f	ENSGT00940000153500.a.a.w.b.g.b #22	ENSGT00390000018295.b	ENSGT00920000149199.c.a	ENSGT01060000253527	ENSGT00940000153500.a.a.w.b.g.a #22	ENSGT00390000018295.a	ENSGT00920000149199.c.b	ENSGT00920000149199.d	ENSGT00390000004428.a.a	ENSGT00390000007463	ENSGT00390000017548.b.a.b	ENSGT00940000156691.v	ENSGT00390000003070.a.a.a.a	ENSGT01090000260240.a.a	ENSGT00390000003070.a.a.b	ENSGT00940000160116.b.a
Cyprininae_a	ANCESTRAL SPECIES	291			ENSGT00940000164753.a	ENSGT00550000075065.a.d	ENSGT00940000160070.b.a.a.a	ENSGT00390000013973.B.g.b.bb	ENSGT00980000202148	ENSGT00940000165054.D.b	ENSGT00390000000463.b.a	ENSGT00940000157338.b.b	ENSGT00390000006544.c.a	ENSGT00940000156104.A.b	ENSGT01050000244961.a.a.b.r	ENSGT00940000155825.o.d #20	ENSGT00390000014547.f	ENSGT00940000153500.a.a.w.b.g.b #22	ENSGT00940000153500.a.a.w.b.g.a #22	ENSGT00390000018295.a	ENSGT00920000149199.c.b	ENSGT00390000004428.a.a	ENSGT00390000007463	ENSGT00390000017548.b.a.b	ENSGT00940000156691.v	ENSGT00390000003070.a.a.b	ENSGT00940000160116.b.a	ENSGT00950000183157.a.a.a.a.b ##35	ENSGT00390000011615.A.a.a	ENSGT00940000159620.b.b.f.b	ENSGT00940000157519.b.b.l	ENSGT01100000263529.a.a.a.a.a.a.a.b.b.b.a.b.a.a.a.b.b.b.b	ENSGT00940000157948.D.e
Common carp reference	MODERN SPECIES	3	ENSCCRG00000059530	ENSCCRG00000067349	ENSCCRG00000076598	ENSCCRG00000070269	ENSCCRG00000041714	mafga (ENSCCRG00000058677)	ENSCCRG00000062553	ENSCCRG00000001889	axin2 (ENSCCRG00000044520)	cep112 (ENSCCRG00000061660)	ENSCCRG00000008235	CACNG5 (ENSCCRG00000072250)	CYTH3 (ENSCCRG00000004938) #20	ENSCCRG00000005824	ENSCCRG00000059939	RAC1 (ENSCCRG00000071134) #22	ENSCCRG00000005810	ENSCCRG00000058994	USH1G (ENSCCRG00000062645)	ENSCCRG00000003010	HID1 (ENSCCRG00000003084)	ENSCCRG00000078232	ENSCCRG00000063522	fscn2a (ENSCCRG00000036137) ##35	ENSCCRG00000036141	ENSCCRG00000033171	socs3a (ENSCCRG00000069624)	cyth1a (ENSCCRG00000012007)	ENSCCRG00000060708	ENSCCRG00000080455	ENSCCRG00000040442
Goldfish	MODERN SPECIES	22	mfsd6l (ENSCARG00000011688)	mafga (ENSCARG00000011682)	ENSCARG00000008317	ENSCARG00000008097	tex2 (ENSCARG00000008021)	ENSCARG00000007999	ENSCARG00000007993	ENSCARG00000007991	axin2 (ENSCARG00000007902)	ENSCARG00000007598	CACNG5 (ENSCARG00000007560)	CYTH3 (ENSCARG00000007451) #20	ENSCARG00000007407	ENSCARG00000007400	ENSCARG00000007390	RAC1 (ENSCARG00000007376) #22	STK19 (ENSCARG00000007369)	ENSCARG00000007361	ENSCARG00000007336	ENSCARG00000007327	USH1G (ENSCARG00000007320)	ENSCARG00000007296	HID1 (ENSCARG00000006457)	BAHCC1 (ENSCARG00000006321)	fscn2a (ENSCARG00000006262) ##35	ENSCARG00000006228	socs3a (ENSCARG00000006222)	cyth1a (ENSCARG00000005662)	ENSCARG00000005618	ENSCARG00000005616	ENSCARG00000005605
Zebrafish	DUPLICATION
Zebrafish	MODERN SPECIES	18	hbae3 (ENSDARG00000079305)	kank2 (ENSDARG00000018393)	DOCK6 (ENSDARG00000035706)	angptl8 (ENSDARG00000097571)	mafga (ENSDARG00000018109)	ENSDARG00000013997	tex2 (ENSDARG00000078186)	axin2 (ENSDARG00000100149)	cep112 (ENSDARG00000079679)	ENSDARG00000099841	ENSDARG00000100672	CACNG5 (ENSDARG00000039240)	CYTH3 (ENSDARG00000005159) #20	CYTH3 (ENSDARG00000089829) #20	SMIM10 (ENSDARG00000100331)	rac1b (ENSDARG00000087954) #22	stk19 (ENSDARG00000086628)	ENSDARG00000115573	rnf213a (ENSDARG00000099465)	zgc:112148 (ENSDARG00000001804)	ENSDARG00000062947	USH1G (ENSDARG00000004322)	OTOP2 (ENSDARG00000006522)	ENSDARG00000021846	ENSDARG00000103739	fscn2a (ENSDARG00000059574) ##35	ENSDARG00000109643	socs3a (ENSDARG00000025428)	cyth1a (ENSDARG00000076742)	usp36 (ENSDARG00000032327)	timp2b (ENSDARG00000075261)
Zebrafish	MODERN SPECIES	1053															ENSDARG00000115752	RAC1 (ENSDARG00000099506) #22	STK19 (ENSDARG00000101693)
Otomorpha	ANCESTRAL SPECIES	184																ENSGT00940000153500.a.a.w.b.h #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000018266	ENSGT00940000159290	ENSGT00940000160393	ENSGT00940000157839	ENSGT00390000016123	ENSGT00390000018570.a.a.a	ENSGT00390000013648	ENSGT00390000004010.a.b.a.b #24	ENSGT00940000156486 #23	ENSGT00940000153496.a.b.a	ENSGT00940000154208.c.b	ENSGT00940000158031.c
Clupeiformes	ANCESTRAL SPECIES	534																ENSGT00940000153500.a.a.w.b.h #22	ENSGT00390000018295	ENSGT00390000006425	ENSGT00940000165478	ENSGT00390000017548.a	ENSGT00940000166319	ENSGT00550000074840
Denticle herring	DUPLICATION
Denticle herring	MODERN SPECIES	18	ENSDCDG00000019541	dhrs7cb (ENSDCDG00000019458)	hs3st3l (ENSDCDG00000019455)	ENSDCDG00000019452	ENSDCDG00000018943	rcvrnb (ENSDCDG00000018925)	PTS (ENSDCDG00000018924)	ENSDCDG00000018914	ENSDCDG00000017499	adprm (ENSDCDG00000017443)	map2k4b (ENSDCDG00000017363)	ENSDCDG00000017356	ENSDCDG00000017342	ENSDCDG00000017337	ENSDCDG00000017331 #19	rac1a (ENSDCDG00000017323) #22	crym (ENSDCDG00000017288)	ENSDCDG00000017281	ENSDCDG00000017278	uqcrc2b (ENSDCDG00000017066)	mosmob (ENSDCDG00000017054)	eef2k (ENSDCDG00000017014)	polr3e (ENSDCDG00000016985)	ogfod3 (ENSDCDG00000016978)	ATRNL1 (ENSDCDG00000014383)	GFRA1 (ENSDCDG00000014140)	ENSDCDG00000014105	SH2D4B (ENSDCDG00000014090)	tspan14 (ENSDCDG00000014072)	mxtx1 (ENSDCDG00000014024)	tmem254 (ENSDCDG00000013970)
Denticle herring	MODERN SPECIES	17	SHISA6 (ENSDCDG00000005601)	ENSDCDG00000005597	ENSDCDG00000005595	FOXK2 (ENSDCDG00000005556)	hlfa (ENSDCDG00000005552)	mmd (ENSDCDG00000005550)	TMEM100 (ENSDCDG00000005549)	pctp (ENSDCDG00000005548)	ENSDCDG00000005547	nog1 (ENSDCDG00000005545)	cbx2 (ENSDCDG00000005543)	RBFOX3 (ENSDCDG00000005538)	ENSDCDG00000005533	SLC44A2 (ENSDCDG00000003514)	ENSDCDG00000003051	RAC1 (ENSDCDG00000002986) #22	stk19 (ENSDCDG00000002936)	DXO (ENSDCDG00000002918)	ENSDCDG00000002898	anks4b (ENSDCDG00000031468)	ENSDCDG00000031463	snu13a (ENSDCDG00000031461)	uqcrc2a (ENSDCDG00000030482)	spc24 (ENSDCDG00000030469)	s1pr5a (ENSDCDG00000030468)	ENSDCDG00000030467	si:dkeyp-69e1.8 (ENSDCDG00000030466)	hmgxb4a (ENSDCDG00000030463)	ankrd54 (ENSDCDG00000030461)	foxred2 (ENSDCDG00000030455)	hmox1a (ENSDCDG00000030454)
Otophysi	ANCESTRAL SPECIES		ENSGT00390000014794.b.k	ENSGT00390000004181	ENSGT00940000163584.b.a.b.b	ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000000984.`b	ENSGT00940000158210.c.a	ENSGT00940000158794.m	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000158585.g.b	ENSGT01070000253744.a.a.a.b.a.b	ENSGT00940000156697	ENSGT00940000154741.d	ENSGT00940000155830.e.a	ENSGT00940000153500.a.a.w.b.h #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000018266	ENSGT00940000159290	ENSGT00940000160393	ENSGT00940000157839	ENSGT00390000016123	ENSGT00390000018570.a.a.a	ENSGT00390000013648	ENSGT00390000004010.a.b.a.b #24	ENSGT00940000156486 #23	ENSGT00940000153496.a.b.a	ENSGT00940000154208.c.b	ENSGT00940000158031.c
Characiphysae	ANCESTRAL SPECIES	1	ENSGT00390000014794.b.k	ENSGT00390000004181	ENSGT00940000163584.b.a.b.b	ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000000984.`b	ENSGT00940000158210.c.a	ENSGT00940000158794.m	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000158585.g.b	ENSGT01070000253744.a.a.a.b.a.b	ENSGT00940000156697	ENSGT00940000154741.d	ENSGT00940000155830.e.a	ENSGT00940000153500.a.a.w.b.h #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000018266	ENSGT00940000157839	ENSGT00390000016123	ENSGT00390000018570.a.a.a	ENSGT00390000013648	ENSGT00390000004010.a.b.a.a.f #24	ENSGT00940000156486 #23	ENSGT00940000153496.a.b.a	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b
Channel catfish	MODERN SPECIES	4	tmem26 (ENSIPUG00000007496)	c13h10orf107 (ENSIPUG00000007481)	arid5b (ENSIPUG00000007418)	ado (ENSIPUG00000007387)	egr2 (ENSIPUG00000007377)	Nrbf2 (ENSIPUG00000007365)	jmjd1c (ENSIPUG00000007001)	reep3 (ENSIPUG00000006933)	cyp26a1 (ENSIPUG00000006894)	exoc6 (ENSIPUG00000006788)	ENSIPUG00000006730	ENSIPUG00000006717	Tubgcp2 (ENSIPUG00000006590)	myof (ENSIPUG00000006470)	ENSIPUG00000006406	rac1a (ENSIPUG00000006360) #22	crym (ENSIPUG00000006282)	snu13b (ENSIPUG00000006267)	uqcrc2b (ENSIPUG00000006223)	mosmob (ENSIPUG00000006204)	eef2k (ENSIPUG00000006144)	Polr3e (ENSIPUG00000006055)	cdr2b (ENSIPUG00000006008)	mettl9 (ENSIPUG00000005995)	KDELR2 (ENSIPUG00000005957) #24	daglb (ENSIPUG00000005930) #23	SPAG9 (ENSIPUG00000005844)	tob1b (ENSIPUG00000005837)	ENSIPUG00000005832	abcc3 (ENSIPUG00000005801)	ENSIPUG00000005784
Characiphysae_b	ANCESTRAL SPECIES	108	ENSGT00390000014794.b.k	ENSGT00390000004181	ENSGT00940000163584.b.a.b.b	ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000000984.`b	ENSGT00940000158210.c.a	ENSGT00940000158794.m	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000158585.g.b	ENSGT01070000253744.a.a.a.b.a.b	ENSGT00940000156697	ENSGT00940000154741.d	ENSGT00940000155830.e.a	ENSGT00940000153500.a.a.w.b.h #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000018266	ENSGT00940000157839
Characoidei	ANCESTRAL SPECIES	104	ENSGT00390000014794.b.k	ENSGT00390000004181	ENSGT00940000163584.b.a.b.b	ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000000984.`b	ENSGT00940000158210.c.a	ENSGT00940000158794.m	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000158585.g.b	ENSGT01070000253744.a.a.a.b.a.b	ENSGT00940000156697	ENSGT00940000154741.d	ENSGT00940000155830.e.a	ENSGT00940000153500.a.a.w.b.h #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000018266	ENSGT00940000157839
Red-bellied piranha	MODERN SPECIES	914														myof (ENSPNAG00000015620)	ENSPNAG00000015401	rac1a (ENSPNAG00000014769) #22	crym (ENSPNAG00000014758)	snu13b (ENSPNAG00000003196)	uqcrc2b (ENSPNAG00000003177)	mosmob (ENSPNAG00000005081)	eef2k (ENSPNAG00000014517)
Mexicana tetra	MODERN SPECIES	19	cabcoco1 (ENSAMXG00000012013)	ENSAMXG00000041834	ENSAMXG00000040739	nrbf2b (ENSAMXG00000032436)	egr2b (ENSAMXG00000039367)	JMJD1C (ENSAMXG00000011988)	reep3b (ENSAMXG00000040684)	cyp26a1 (ENSAMXG00000011960)	exoc6 (ENSAMXG00000011954)	ENSAMXG00000038557	ENSAMXG00000042008	ENSAMXG00000035802	tubgcp2 (ENSAMXG00000008945)	myof (ENSAMXG00000008941)	ENSAMXG00000008936	rac1a (ENSAMXG00000008935) #22	crym (ENSAMXG00000008929)	snu13b (ENSAMXG00000037464)	uqcrc2b (ENSAMXG00000008923)	mosmob (ENSAMXG00000033180)	eef2k (ENSAMXG00000038398)	PLBD1 (ENSAMXG00000008899)	ENSAMXG00000033870	GUCY2C (ENSAMXG00000008839)	csdc2a (ENSAMXG00000008816)	aco2 (ENSAMXG00000008808)	phf5a (ENSAMXG00000035422)	tefa (ENSAMXG00000008798)	ENSAMXG00000008768	cby1 (ENSAMXG00000008754)	slc16a8 (ENSAMXG00000008747)
Electric eel	MODERN SPECIES	397			ENSEEEG00000015386	adoa (ENSEEEG00000015385)	egr2b (ENSEEEG00000015384)	nrbf2b (ENSEEEG00000015383)	JMJD1C (ENSEEEG00000015381)	reep3b (ENSEEEG00000015377)	cyp26a1 (ENSEEEG00000015370)	exoc6 (ENSEEEG00000015316)	ENSEEEG00000015310	ENSEEEG00000015309	tubgcp2 (ENSEEEG00000015300)	myof (ENSEEEG00000015292)	ENSEEEG00000015291	rac1a (ENSEEEG00000015268) #22	crym (ENSEEEG00000015263)	snu13b (ENSEEEG00000015257)	uqcrc2b (ENSEEEG00000014524)	mosmob (ENSEEEG00000014476)	eef2k (ENSEEEG00000014201)
Cyprinoidei	ANCESTRAL SPECIES	29	ENSGT00390000014794.b.k	ENSGT00390000004181	ENSGT00940000163584.b.a.b.b	ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000000984.`b	ENSGT00940000158210.c.a	ENSGT00940000158794.m	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000158585.g.b	ENSGT01070000253744.a.a.a.b.a.b	ENSGT00940000156697	ENSGT00940000154741.d	ENSGT00940000155830.e.a	ENSGT00940000153500.a.a.w.b.h #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915	ENSGT00390000018266	ENSGT00940000157839	ENSGT00390000018386	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT01020000230346.F	ENSGT00940000158654	ENSGT00940000157423.a.b	ENSGT00730000110974.b	ENSGT00940000154268.k.b	ENSGT00950000183046.a.b.k
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	5	ENSGT00390000014794.b.k.d	ENSGT00390000004181.d	ENSGT00940000163584.b.a.b.b.b	ENSGT00390000014082.a.b.m	ENSGT00940000158394.e.k	ENSGT00390000000984.`b.a	ENSGT00940000158210.c.a.b	ENSGT00940000158794.m.a	ENSGT00800000124060.B.d	ENSGT00390000005739.a.b.`b	ENSGT00940000158585.g.b.b	ENSGT01070000253744.a.a.a.b.a.b	ENSGT00940000156697.g	ENSGT00940000154741.d.b	ENSGT00940000155830.e.a.c	ENSGT00940000153500.a.a.w.b.h.c #22	ENSGT00940000154915.wb	ENSGT00390000018266.x.b	ENSGT00940000157839.d	ENSGT00940000154352.A.e.a	ENSGT00390000018386.`b	ENSGT00940000159914.a	ENSGT00940000160643.j.d	ENSGT00940000155348.B.d.f	ENSGT01020000230346.F.z	ENSGT00940000158654.l	ENSGT00940000158253.eb.b	ENSGT00940000157423.a.b.a	ENSGT00730000110974.b.b	ENSGT00940000154268.k.b.b	ENSGT00950000183046.a.b.k.e
Goldfish	MODERN SPECIES	30	ENSCARG00000019475	cabcoco1 (ENSCARG00000019448)	ENSCARG00000019394	adoa (ENSCARG00000019385)	egr2b (ENSCARG00000019382)	nrbf2b (ENSCARG00000019378)	JMJD1C (ENSCARG00000019292)	reep3b (ENSCARG00000019244)	cyp26a1 (ENSCARG00000019235)	exoc6 (ENSCARG00000019157)	ENSCARG00000019101	ENSCARG00000019077	tubgcp2 (ENSCARG00000019025)	myof (ENSCARG00000018818)	ENSCARG00000018760	rac1a (ENSCARG00000018742) #22	ENSCARG00000018730	snu13b (ENSCARG00000018707)	uqcrc2b (ENSCARG00000018423)	mosmob (ENSCARG00000018376)	eef2k (ENSCARG00000018019)	mki67 (ENSCARG00000017959)	ndc80 (ENSCARG00000017879)	tut1 (ENSCARG00000017854)	pyyb (ENSCARG00000017847)	mpp2b (ENSCARG00000017735)	psmc5 (ENSCARG00000017411)	SMARCD2 (ENSCARG00000017314)	atxn7l3b (ENSCARG00000017293)	slc4a1b (ENSCARG00000017230)	ngfrb (ENSCARG00000017208)
Cyprininae_a	ANCESTRAL SPECIES	14	ENSGT00390000014082.a.b.m	ENSGT00940000158394.e.k	ENSGT00390000000984.`b.a	ENSGT00940000158210.c.a.b	ENSGT00940000158794.m.a	ENSGT00800000124060.B.d	ENSGT00390000005739.a.b.`b	ENSGT00940000158585.g.b.b	ENSGT00940000158585.g.b.a	ENSGT01070000253744.a.a.a.b.a.b	ENSGT00940000156697.h	ENSGT00940000154741.d.a	ENSGT00940000156697.g	ENSGT00940000154741.d.b	ENSGT00940000155830.e.a.c	ENSGT00940000153500.a.a.w.b.h.c #22	ENSGT00940000154915.wb	ENSGT00940000157839.d	ENSGT00940000154352.A.e.a	ENSGT00390000018386.`b	ENSGT00940000159914.a	ENSGT00940000160643.j.d	ENSGT00940000155348.B.d.f	ENSGT01020000230346.F.z	ENSGT00940000158654.l	ENSGT00940000158253.eb.b	ENSGT00940000157423.a.b.a	ENSGT00730000110974.b.b	ENSGT00940000154268.k.b.b	ENSGT00950000183046.a.b.k.e	ENSGT00940000158922.c.b
Golden-line barbel	MODERN SPECIES	220	cabcoco1 (ENSSGRG00000009015)	ENSSGRG00000009016	adoa (ENSSGRG00000009018)	egr2b (ENSSGRG00000009019)	adoa (ENSSGRG00000009021)	egr2b (ENSSGRG00000009022)	nrbf2b (ENSSGRG00000009023)	JMJD1C (ENSSGRG00000009025)	reep3b (ENSSGRG00000009326)	cyp26a1 (ENSSGRG00000009328)	exoc6 (ENSSGRG00000009355)	ENSSGRG00000009672	tubgcp2 (ENSSGRG00000009804)	myof (ENSSGRG00000010883)	ENSSGRG00000013646	rac1a (ENSSGRG00000013656) #22	crym (ENSSGRG00000013789)	snu13b (ENSSGRG00000013790)	uqcrc2b (ENSSGRG00000013794)	mosmob (ENSSGRG00000014052)	eef2k (ENSSGRG00000014058)
Common carp reference	MODERN SPECIES	44	ENSCCRG00000016179	tmem26b (ENSCCRG00000069522)	cabcoco1 (ENSCCRG00000062440)	ENSCCRG00000016433	egr2b (ENSCCRG00000070828)	nrbf2b (ENSCCRG00000071375)	JMJD1C (ENSCCRG00000037063)	reep3b (ENSCCRG00000037053)	cyp26a1 (ENSCCRG00000037048)	exoc6 (ENSCCRG00000035051)	ENSCCRG00000040861	ENSCCRG00000055896	tubgcp2 (ENSCCRG00000048185)	myof (ENSCCRG00000031220)	ENSCCRG00000022645	rac1a (ENSCCRG00000076289) #22	snu13b (ENSCCRG00000077601)	uqcrc2b (ENSCCRG00000079971)	eef2k (ENSCCRG00000070112)	mki67 (ENSCCRG00000060335)	ndc80 (ENSCCRG00000028648)	tut1 (ENSCCRG00000028651)	pyyb (ENSCCRG00000054435)	mpp2b (ENSCCRG00000076080)	psmc5 (ENSCCRG00000064132)	ENSCCRG00000020106	atxn7l3b (ENSCCRG00000031286)	slc4a1b (ENSCCRG00000010681)	ngfrb (ENSCCRG00000064907)	ndufa4b (ENSCCRG00000007780)	fam117ab (ENSCCRG00000007777)
Cyprininae	ANCESTRAL SPECIES	178	ENSGT00940000159995.a	ENSGT00390000014794.b.k.c	ENSGT00390000004181.c	ENSGT00940000163584.b.a.b.b.a	ENSGT00390000014082.a.b.n	ENSGT00940000158394.e.l	ENSGT00390000000984.`b.b	ENSGT00940000158210.c.a.a	ENSGT00940000158794.m.b	ENSGT00800000124060.B.c	ENSGT00390000005739.a.b.ab	ENSGT00940000158585.g.b.a	ENSGT00940000156697.h	ENSGT00940000154741.d.a	ENSGT00940000155830.e.a.d	ENSGT00940000153500.a.a.w.b.h.d #22	ENSGT00390000000237	ENSGT00550000074840	ENSGT00940000154915.vb	ENSGT00390000018266.x.a	ENSGT00940000157839.c	ENSGT00940000154352.A.e.b	ENSGT00940000159914.b	ENSGT00940000160643.j.c	ENSGT00940000155348.B.d.e	ENSGT01020000230346.F.y	ENSGT00940000158654.k	ENSGT00940000158253.eb.a	ENSGT00940000157423.a.b.b	ENSGT00730000110974.b.a	ENSGT00940000154268.k.b.a
Goldfish	MODERN SPECIES	3	ANK3 (ENSCARG00000022343)	RHOBTB1 (ENSCARG00000022069)	tmem26b (ENSCARG00000022049)	ENSCARG00000022028	ENSCARG00000022012	adoa (ENSCARG00000022005)	egr2b (ENSCARG00000021998)	nrbf2b (ENSCARG00000021989)	JMJD1C (ENSCARG00000021702)	reep3b (ENSCARG00000021629)	cyp26a1 (ENSCARG00000021596)	exoc6 (ENSCARG00000020672)	ENSCARG00000020613	ENSCARG00000019096	ENSCARG00000019081	rac1a (ENSCARG00000019053) #22	crym (ENSCARG00000019036)	snu13b (ENSCARG00000019018)	uqcrc2b (ENSCARG00000016422)	mosmob (ENSCARG00000016330)	eef2k (ENSCARG00000015629)	mki67 (ENSCARG00000015604)	pyyb (ENSCARG00000015600)	mpp2b (ENSCARG00000015550)	psmc5 (ENSCARG00000015460)	SMARCD2 (ENSCARG00000014806)	atxn7l3b (ENSCARG00000014790)	slc4a1b (ENSCARG00000014732)	ngfrb (ENSCARG00000014719)	ndufa4b (ENSCARG00000014701)	fam117ab (ENSCARG00000014688)
Cyprininae_a	ANCESTRAL SPECIES	292															ENSGT00940000155830.e.a.d	ENSGT00940000153500.a.a.w.b.h.d #22	ENSGT00390000000237	ENSGT00550000074840.o.a	ENSGT00550000074840.o.b	ENSGT00940000154915.vb	ENSGT00390000018266.x.a	ENSGT00940000157839.c	ENSGT00940000154352.A.e.b	ENSGT00940000159914.b	ENSGT00940000160643.j.c	ENSGT00940000155348.B.d.e	ENSGT01020000230346.F.y	ENSGT00940000158654.k	ENSGT00940000158253.eb.a	ENSGT00940000157423.a.b.b	ENSGT00730000110974.b.a
Golden-line barbel	MODERN SPECIES	1318															ENSSGRG00000026357	rac1a (ENSSGRG00000026266) #22	crym (ENSSGRG00000026249)	snu13b (ENSSGRG00000026243)	uqcrc2b (ENSSGRG00000024994)	ndc80 (ENSSGRG00000024974)	mosmob (ENSSGRG00000024969)	eef2k (ENSSGRG00000024621)	mki67 (ENSSGRG00000024619)	tut1 (ENSSGRG00000024618)	pyyb (ENSSGRG00000024617)	mpp2b (ENSSGRG00000024282)	psmc5 (ENSSGRG00000024276)	SMARCD2 (ENSSGRG00000023892)	atxn7l3b (ENSSGRG00000023874)	slc4a1b (ENSSGRG00000023872)	ngfrb (ENSSGRG00000023868)
Common carp reference	MODERN SPECIES	25	cabcoco1 (ENSCCRG00000030025)	ENSCCRG00000076029	adoa (ENSCCRG00000075647)	egr2b (ENSCCRG00000066443)	nrbf2b (ENSCCRG00000077099)	JMJD1C (ENSCCRG00000014475)	reep3b (ENSCCRG00000014417)	cyp26a1 (ENSCCRG00000019654)	exoc6 (ENSCCRG00000014367)	ENSCCRG00000075206	ENSCCRG00000040823	tubgcp2 (ENSCCRG00000014236)	ENSCCRG00000077642	myof (ENSCCRG00000013730)	ENSCCRG00000063838	rac1a (ENSCCRG00000022427) #22	crym (ENSCCRG00000055391)	uqcrc2b (ENSCCRG00000022474)	snu13b (ENSCCRG00000059367)	mosmob (ENSCCRG00000028636)	eef2k (ENSCCRG00000028638)	mki67 (ENSCCRG00000028641)	ENSCCRG00000073241	ndc80 (ENSCCRG00000050957)	tut1 (ENSCCRG00000080917)	pyyb (ENSCCRG00000050944)	mpp2b (ENSCCRG00000028656)	psmc5 (ENSCCRG00000081360)	ENSCCRG00000072232	slc4a1b (ENSCCRG00000017289)	ngfrb (ENSCCRG00000071358)
Zebrafish	MODERN SPECIES	3	PLEKHA1 (ENSDARG00000094504)	htra1b (ENSDARG00000014907)	ENSDARG00000089828	zgc:174164 (ENSDARG00000057138)	get4 (ENSDARG00000024398)	ENSDARG00000095891	vps35l (ENSDARG00000020041)	raraa (ENSDARG00000056783)	top2a (ENSDARG00000024488)	ENSDARG00000101171	med24 (ENSDARG00000099431)	csf3a (ENSDARG00000102211)	ENSDARG00000079371	myof (ENSDARG00000006112)	ENSDARG00000077178	rac1a (ENSDARG00000074849) #22	crym (ENSDARG00000062817)	snu13b (ENSDARG00000023299)	uqcrc2b (ENSDARG00000071691)	mosmob (ENSDARG00000035837)	eef2k (ENSDARG00000035835)	mki67 (ENSDARG00000091150)	ndc80 (ENSDARG00000071694)	tut1 (ENSDARG00000057321)	pyyb (ENSDARG00000035832)	mpp2b (ENSDARG00000010957)	ENSDARG00000096505	psmc5 (ENSDARG00000015315)	SMARCD2 (ENSDARG00000088877)	atxn7l3b (ENSDARG00000079131)	slc4a1b (ENSDARG00000024560)
Neopterygii	ANCESTRAL SPECIES	839															ENSGT00980000198850	ENSGT00940000153500.a.a.x #22
Osteoglossocephalai	ANCESTRAL SPECIES	1037															ENSGT00980000198850	ENSGT00940000153500.a.a.x #22
Osteoglossiformes	ANCESTRAL SPECIES	508															ENSGT00390000014547	ENSGT00940000153500.a.a.x #22	ENSGT00390000018295	ENSGT00940000165478	ENSGT00390000006425
P. kingsleyae	MODERN SPECIES	30	kpnb1 (ENSPKIG00000017563)	ENSPKIG00000017522	trrap (ENSPKIG00000017422)	ENSPKIG00000017369	nptx2a (ENSPKIG00000017338)	baiap2l1b (ENSPKIG00000017274)	bri3 (ENSPKIG00000017255) #7	LMTK2 (ENSPKIG00000017224) #10	pvalb5 (ENSPKIG00000016100)	pvalb1 (ENSPKIG00000015639)	pvalb4 (ENSPKIG00000015629)	pvalb8 (ENSPKIG00000015607)	aimp2 (ENSPKIG00000015584) #16	CYTH3 (ENSPKIG00000015523) #20	ENSPKIG00000015488	RAC1 (ENSPKIG00000015464) #22	stk19 (ENSPKIG00000015444)	ENSPKIG00000015399	DXO (ENSPKIG00000015371)	ENSPKIG00000015346	snu13a (ENSPKIG00000015329)	uqcrc2b (ENSPKIG00000015284)	MOSMO (ENSPKIG00000015266)	VWA3A (ENSPKIG00000015219)	SDR42E2 (ENSPKIG00000015189)	ENSPKIG00000015158	mfsd13al (ENSPKIG00000015138)	kdelr2b (ENSPKIG00000015078) #24	ENSPKIG00000015111	tob1a (ENSPKIG00000015044)	ENSPKIG00000015033
Asian bonytongue	MODERN SPECIES	20	MYORG (ENSSFOG00015026192)	ENSSFOG00015028137	pcsk1 (ENSSFOG00015018312)	ENSSFOG00015032844	cd8a (ENSSFOG00015018371)	gnrh2 (ENSSFOG00015018387)	ENSSFOG00015025132	ENSSFOG00015024786	zgc:109965 (ENSSFOG00015031061)	DNAI1 (ENSSFOG00015030539)	ENSSFOG00015022961	zgc:109965 (ENSSFOG00015032946)	DNAI1 (ENSSFOG00015018863)	anks4b (ENSSFOG00015018850)	SMIM10L2A (ENSSFOG00015028605)	rac1b (ENSSFOG00015018813) #22	stk19 (ENSSFOG00015018806)	trrap (ENSSFOG00015018702)	fktn (ENSSFOG00015018657)	HOOK3 (ENSSFOG00015018568)	rnf170 (ENSSFOG00015027638)	ENSSFOG00015005612	ENSSFOG00015003074	ENSSFOG00015024807	ift74 (ENSSFOG00015003181)	hsdl2 (ENSSFOG00015003240)	ythdc1 (ENSSFOG00015003298)	SETD9 (ENSSFOG00015003329)	ENSSFOG00015003360	snx30 (ENSSFOG00015028974)	palm2akap2 (ENSSFOG00015003393)
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000153500.a.a #22
Lamprey	DUPLICATION
Lamprey	MODERN SPECIES	2283															ENSPMAG00000008869 #22	RAC1 (ENSPMAG00000008880) #22
Lamprey	MODERN SPECIES	2283															RAC1 (ENSPMAG00000008880) #22	ENSPMAG00000008869 #22
Hagfish	MODERN SPECIES	1093											ENSEBUG00000009146 #36	ENSEBUG00000001044 #37	ENSEBUG00000010989	ENSEBUG00000008122	ENSEBUG00000008511	RAC1 (ENSEBUG00000014547) #22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000153500.a.b ##22
Gnathostomata	ANCESTRAL SPECIES	256															ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00940000161333	ENSGT00940000159924
Elephant shark	MODERN SPECIES	1495	cdc42ep4a (ENSCMIG00000018819)	SDK2 (ENSCMIG00000018805)	ENSCMIG00000018782	FAM104B (ENSCMIG00000018780)	ENSCMIG00000018772	ENSCMIG00000018770	ENSCMIG00000018741	BAHCC1 (ENSCMIG00000018714)	actg1 (ENSCMIG00000018563) ##36	fscn2b (ENSCMIG00000018465) ##35	FAAP100 (ENSCMIG00000018457)	ENSCMIG00000018453	nploc4 (ENSCMIG00000018376)	TSPAN10 (ENSCMIG00000018340)	LRRC45 (ENSCMIG00000018338)	rac3a (ENSCMIG00000018330) ##22	dcxr (ENSCMIG00000018326)	rfng (ENSCMIG00000018325)	gps1 (ENSCMIG00000018321)	dus1l (ENSCMIG00000018311)	ccdc57 (ENSCMIG00000018291)	CCDC57 (ENSCMIG00000018281)	slc16a3a (ENSCMIG00000018279)	csnk1db (ENSCMIG00000018254)	c1qtnf1 (ENSCMIG00000018242)	ENSCMIG00000018241	RBFOX3 (ENSCMIG00000018231)	ENSCMIG00000018223	enpp7.2 (ENSCMIG00000018221)	ENSCMIG00000018219	jmjd6 (ENSCMIG00000018215)
Euteleostomi	ANCESTRAL SPECIES	333															ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT01070000253744.a.a.a.b.a.b	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00940000161333
Sarcopterygii	ANCESTRAL SPECIES	294															ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT01070000253744.a.a.a.b.a.b	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00910000147748	ENSGT00940000153536.a.a	ENSGT00940000153536.a.b
Coelacanth	MODERN SPECIES	257	SYNGR2 (ENSLACG00000016115)	TMC8 (ENSLACG00000015937)	TMC6 (ENSLACG00000015781)	ARL16 (ENSLACG00000015736)	ENSLACG00000015693	hgs (ENSLACG00000022379)	zgc:103625 (ENSLACG00000015617)	SLC25A10 (ENSLACG00000015479)	GCGR (ENSLACG00000014981)	ENSLACG00000014381	MCRIP1 (ENSLACG00000014317)	CSNK1D (ENSLACG00000014012)	SLC16A3 (ENSLACG00000013718)	ENSLACG00000022423	FASN (ENSLACG00000012857)	RAC3 (ENSLACG00000022128) ##22	DCXR (ENSLACG00000012608)	RFNG (ENSLACG00000012430)	GPS1 (ENSLACG00000012243)	ENSLACG00000011914	DUS1L (ENSLACG00000011348)	LRRC45 (ENSLACG00000011122)	ENSLACG00000010847	NOTUM (ENSLACG00000010522)	ENSLACG00000009319	CENPX (ENSLACG00000022125)	SIRT7 (ENSLACG00000008982)	pycr1a (ENSLACG00000008611)	ENSLACG00000008166	PCYT2 (ENSLACG00000007326)	gnav1 (ENSLACG00000006337)
Tetrapoda	ANCESTRAL SPECIES	70	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00950000184814	ENSGT00390000018868.B.a	ENSGT00550000075186	ENSGT00940000158204	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT01070000253744.a.a.a.b.a.b	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b
Amniota	ANCESTRAL SPECIES	32	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00950000184814	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b
Sauria	ANCESTRAL SPECIES	29	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00950000184814	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00960000189630	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b
Lepidosauria	ANCESTRAL SPECIES	28	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00950000184814	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00960000189630	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b
Episquamata	ANCESTRAL SPECIES	4	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00950000184814	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00960000189630	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b	ENSGT00940000154208.c.b
Toxicofera	ANCESTRAL SPECIES	3	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00950000184814	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00960000189630	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b	ENSGT00940000154208.c.b
Elapidae	ANCESTRAL SPECIES	2	ENSGT00940000159603	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00960000189630	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000162213	ENSGT00940000153496.a.b	ENSGT00940000154208.c.b	ENSGT00940000160624
Elapidae_a	ANCESTRAL SPECIES	18	ENSGT00940000159603	ENSGT00940000157351	ENSGT00390000006233.c.b.w	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00960000189630	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000162213	ENSGT00940000153496.a.b	ENSGT00940000154208.c.b	ENSGT00940000160624
Acanthophiinae	ANCESTRAL SPECIES	18	ENSGT00940000159603	ENSGT00940000157351	ENSGT00390000006233.c.b.w	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00960000189630	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000162213	ENSGT00940000153496.a.b	ENSGT00940000154208.c.b	ENSGT00940000160624
Mainland tiger snake	MODERN SPECIES	19	P4HB (ENSNSUG00000010628)	ENSNSUG00000010631	ALYREF (ENSNSUG00000010633)	ANAPC11 (ENSNSUG00000010635)	NPB (ENSNSUG00000010637)	PCYT2 (ENSNSUG00000010638)	SIRT7 (ENSNSUG00000010641)	MAFG (ENSNSUG00000010642)	ENSNSUG00000010644	MYADML2 (ENSNSUG00000010646)	NOTUM (ENSNSUG00000010647)	ENSNSUG00000010653	ENSNSUG00000010654	CENPX (ENSNSUG00000010655)	LRRC45 (ENSNSUG00000010657)	RAC3 (ENSNSUG00000010663) ##22	DCXR (ENSNSUG00000010688)	RFNG (ENSNSUG00000010689)	GPS1 (ENSNSUG00000010699)	DUS1L (ENSNSUG00000010701)	FASN (ENSNSUG00000010866)	SLC16A3 (ENSNSUG00000012888)	CSNK1D (ENSNSUG00000012889)	ENSNSUG00000012890	MBTD1 (ENSNSUG00000012894)	NME1 (ENSNSUG00000012962)	SPAG9 (ENSNSUG00000012963)	ENSNSUG00000013181	TOB1 (ENSNSUG00000013182)	WFIKKN2 (ENSNSUG00000013183)	ENSNSUG00000013184
Eastern brown snake	MODERN SPECIES	17	MCRIP1 (ENSPTXG00000003281)	PPP1R27 (ENSPTXG00000003284)	P4HB (ENSPTXG00000003285)	ENSPTXG00000003287	ALYREF (ENSPTXG00000003288)	ANAPC11 (ENSPTXG00000003290)	NPB (ENSPTXG00000003291)	PCYT2 (ENSPTXG00000003292)	SIRT7 (ENSPTXG00000003294)	MAFG (ENSPTXG00000003296)	ENSPTXG00000003298	MYADML2 (ENSPTXG00000003301)	NOTUM (ENSPTXG00000003302)	ASPSCR1 (ENSPTXG00000003305)	LRRC45 (ENSPTXG00000003307)	RAC3 (ENSPTXG00000003313) ##22	DCXR (ENSPTXG00000003314)	RFNG (ENSPTXG00000003317)	GPS1 (ENSPTXG00000003319)	ENSPTXG00000003321	DUS1L (ENSPTXG00000003322)	FASN (ENSPTXG00000003337)	CCDC57 (ENSPTXG00000003448)	SLC16A3 (ENSPTXG00000003450)	CSNK1D (ENSPTXG00000003453)	UTP18 (ENSPTXG00000003454)	MBTD1 (ENSPTXG00000003455)	NME1 (ENSPTXG00000003458)	SPAG9 (ENSPTXG00000003460)	TOB1 (ENSPTXG00000003463)	WFIKKN2 (ENSPTXG00000003466)
Blue-lipped sea krait	MODERN SPECIES	2515													ASPSCR1 (ENSLLTG00000017881)	CENPX (ENSLLTG00000017878)	LRRC45 (ENSLLTG00000017873)	RAC3 (ENSLLTG00000017870) ##22	DCXR (ENSLLTG00000017865)	RFNG (ENSLLTG00000017861)	GPS1 (ENSLLTG00000017850)	DUS1L (ENSLLTG00000017842)	SLITRK2 (ENSLLTG00000017839)
Indian cobra	MODERN SPECIES	1	PPP1R27 (ENSNNAG00000012631)	P4HB (ENSNNAG00000012550)	ARHGDIA (ENSNNAG00000012520)	ALYREF (ENSNNAG00000012493)	ANAPC11 (ENSNNAG00000012477)	NPB (ENSNNAG00000012440)	PCYT2 (ENSNNAG00000012404)	SIRT7 (ENSNNAG00000012376)	MAFG (ENSNNAG00000012361)	ENSNNAG00000012353	MYADML2 (ENSNNAG00000012342)	NOTUM (ENSNNAG00000012288)	ENSNNAG00000012257	CENPX (ENSNNAG00000012219)	LRRC45 (ENSNNAG00000012156)	RAC3 (ENSNNAG00000012134) ##22	DCXR (ENSNNAG00000012074)	RFNG (ENSNNAG00000011894)	ENSNNAG00000011874	GPS1 (ENSNNAG00000011829)	DUS1L (ENSNNAG00000011747)	FASN (ENSNNAG00000010596)	ENSNNAG00000010394	CCDC57 (ENSNNAG00000010284)	SLC16A3 (ENSNNAG00000010260)	CSNK1D (ENSNNAG00000010070)	UTP18 (ENSNNAG00000010013)	MBTD1 (ENSNNAG00000009948)	NME1 (ENSNNAG00000009920)	ENSNNAG00000009901	ENSNNAG00000009825
Lizard	MODERN SPECIES	1	P4HB (ENSACAG00000010570)	ARHGDIA (ENSACAG00000010539)	ENSACAG00000038140	ALYREF (ENSACAG00000010526)	ANAPC11 (ENSACAG00000040037)	NPB (ENSACAG00000022358)	PCYT2 (ENSACAG00000010492)	SIRT7 (ENSACAG00000010434)	MAFG (ENSACAG00000010413)	ENSACAG00000010316	MYADML2 (ENSACAG00000010270)	NOTUM (ENSACAG00000010278)	ASPSCR1 (ENSACAG00000010247)	ENSACAG00000045280	LRRC45 (ENSACAG00000010215)	RAC3 (ENSACAG00000010192) ##22	DCXR (ENSACAG00000010147)	ENSACAG00000010142	RFNG (ENSACAG00000010094)	ENSACAG00000042193	GPS1 (ENSACAG00000009996)	DUS1L (ENSACAG00000009945)	FASN (ENSACAG00000009470)	ENSACAG00000037735	CCDC57 (ENSACAG00000002600)	SLC16A3 (ENSACAG00000002565)	CSNK1D (ENSACAG00000002494)	UTP18 (ENSACAG00000002427)	MBTD1 (ENSACAG00000002284)	NME2 (ENSACAG00000002188)	NME1 (ENSACAG00000035641)
Laterata	ANCESTRAL SPECIES	1	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00950000184814	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00960000189630	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT01000000219980	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00440000033919	ENSGT00940000153840.a.a	ENSGT00940000161569	ENSGT00940000162213	ENSGT00940000153496.a.b	ENSGT00940000154208.c.b
Common wall lizard	MODERN SPECIES	10	P4HB (ENSPMRG00000005775)	ALYREF (ENSPMRG00000005805)	ENSPMRG00000005818	ANAPC11 (ENSPMRG00000005826)	NPB (ENSPMRG00000005829)	PCYT2 (ENSPMRG00000005834)	SIRT7 (ENSPMRG00000005848)	MAFG (ENSPMRG00000005856)	ENSPMRG00000005867	MYADML2 (ENSPMRG00000005941)	NOTUM (ENSPMRG00000005949)	ENSPMRG00000005956	ASPSCR1 (ENSPMRG00000005960)	ENSPMRG00000005982	LRRC45 (ENSPMRG00000005990)	RAC3 (ENSPMRG00000005998) ##22	DCXR (ENSPMRG00000006003)	ENSPMRG00000006018	RFNG (ENSPMRG00000006035)	GPS1 (ENSPMRG00000006095)	ENSPMRG00000006107	DUS1L (ENSPMRG00000006116)	FASN (ENSPMRG00000006130)	CCDC57 (ENSPMRG00000006157)	ENSPMRG00000006168	SLC16A3 (ENSPMRG00000006172)	CSNK1D (ENSPMRG00000006184)	UTP18 (ENSPMRG00000006203)	MBTD1 (ENSPMRG00000006220)	NME2 (ENSPMRG00000006231)	NME1 (ENSPMRG00000006239)
Argentine black and white tegu	MODERN SPECIES	1	P4HB (ENSSMRG00000023356)	ARHGDIA (ENSSMRG00000023355)	ENSSMRG00000023354	ALYREF (ENSSMRG00000023353)	ANAPC11 (ENSSMRG00000023352)	NPB (ENSSMRG00000023351)	PCYT2 (ENSSMRG00000023350)	SIRT7 (ENSSMRG00000023349)	MAFG (ENSSMRG00000023348)	ENSSMRG00000023347	MYADML2 (ENSSMRG00000023346)	NOTUM (ENSSMRG00000023345)	ASPSCR1 (ENSSMRG00000023343)	CENPX (ENSSMRG00000023342)	LRRC45 (ENSSMRG00000023341)	RAC3 (ENSSMRG00000023340) ##22	DCXR (ENSSMRG00000023339)	ENSSMRG00000023338	RFNG (ENSSMRG00000023337)	GPS1 (ENSSMRG00000023336)	DUS1L (ENSSMRG00000023335)	FASN (ENSSMRG00000023334)	ENSSMRG00000023333	SLC16A3 (ENSSMRG00000023332)	CSNK1D (ENSSMRG00000023331)	UTP18 (ENSSMRG00000023330)	MBTD1 (ENSSMRG00000023329)	NME2 (ENSSMRG00000023328)	NME1 (ENSSMRG00000023327)	ENSSMRG00000023326	SPAG9 (ENSSMRG00000023325)
tuatara	MODERN SPECIES	377										MYADML2 (ENSSPUG00000007128)	NOTUM (ENSSPUG00000007116)	ASPSCR1 (ENSSPUG00000007074)	ENSSPUG00000007061	CENPX (ENSSPUG00000007054)	LRRC45 (ENSSPUG00000007036)	RAC3 (ENSSPUG00000007026) ##22	DCXR (ENSSPUG00000007011)	RFNG (ENSSPUG00000006995)	GPS1 (ENSSPUG00000006850)	DUS1L (ENSSPUG00000006796)	FASN (ENSSPUG00000006729)	ENSSPUG00000006708	CSNK1D (ENSSPUG00000006478)	CA10 (ENSSPUG00000006438)
Archelosauria	ANCESTRAL SPECIES	19	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00950000184814	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00960000189630	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b
Cryptodira	ANCESTRAL SPECIES	72	ENSGT00940000159603	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00960000189630	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b
Testudinoidea	ANCESTRAL SPECIES	14	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT01100000266789	ENSGT00390000018868.B.a	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00960000189630	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b
Testudinidae	ANCESTRAL SPECIES	18	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT01100000266789	ENSGT00390000018868.B.a	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00960000189630	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b
Goode s thornscrub tortoise	MODERN SPECIES	6	PPP1R27 (ENSGEVG00005015035)	P4HB (ENSGEVG00005015053)	ARHGDIA (ENSGEVG00005015089)	ALYREF (ENSGEVG00005015119)	ENSGEVG00005015146	ANAPC11 (ENSGEVG00005015171)	NPB (ENSGEVG00005015259)	SIRT7 (ENSGEVG00005015330)	MAFG (ENSGEVG00005015353)	ENSGEVG00005015367	MYADML2 (ENSGEVG00005015384)	NOTUM (ENSGEVG00005005722)	ASPSCR1 (ENSGEVG00005005760)	CENPX (ENSGEVG00005005809)	LRRC45 (ENSGEVG00005005834)	RAC3 (ENSGEVG00005005878) ##22	DCXR (ENSGEVG00005005913)	RFNG (ENSGEVG00005005952)	GPS1 (ENSGEVG00005006027)	DUS1L (ENSGEVG00005006072)	FASN (ENSGEVG00005006110)	CCDC57 (ENSGEVG00005006165)	SLC16A3 (ENSGEVG00005006229)
Abingdon island giant tortoise	MODERN SPECIES	2471		PPP1R27 (ENSCABG00000009641)	P4HB (ENSCABG00000009644)	ARHGDIA (ENSCABG00000009649)	ENSCABG00000009655	ANAPC11 (ENSCABG00000009743)	ENSCABG00000009746	PCYT2 (ENSCABG00000009749)	SIRT7 (ENSCABG00000009752)	MAFG (ENSCABG00000009773)	ENSCABG00000009786	MYADML2 (ENSCABG00000009938)	NOTUM (ENSCABG00000009940)	ASPSCR1 (ENSCABG00000009943)	LRRC45 (ENSCABG00000009945)	RAC3 (ENSCABG00000009948) ##22	DCXR (ENSCABG00000009989)	RFNG (ENSCABG00000009991)	ENSCABG00000009993	GPS1 (ENSCABG00000009995)	DUS1L (ENSCABG00000009997)	FASN (ENSCABG00000010044)	ENSCABG00000013729
Emydidae	ANCESTRAL SPECIES	17	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT01100000266789	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT01040000244454	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00960000189630	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b
painted turtle	MODERN SPECIES	696	SLC25A10 (ENSCPBG00000011479)	GCGR (ENSCPBG00000011482)	MCRIP1 (ENSCPBG00000011486)	PPP1R27 (ENSCPBG00000011488)	ARHGDIA (ENSCPBG00000011492)	ANAPC11 (ENSCPBG00000011495)	NPB (ENSCPBG00000011498)	PCYT2 (ENSCPBG00000011506)	SIRT7 (ENSCPBG00000011508)	MAFG (ENSCPBG00000011509)	ENSCPBG00000011510	MYADML2 (ENSCPBG00000011512)	NOTUM (ENSCPBG00000011513)	ASPSCR1 (ENSCPBG00000011514)	LRRC45 (ENSCPBG00000011519)	RAC3 (ENSCPBG00000011522) ##22	DCXR (ENSCPBG00000011526)	ENSCPBG00000011529	RFNG (ENSCPBG00000011530)	GPS1 (ENSCPBG00000011535)	DUS1L (ENSCPBG00000011543)	FASN (ENSCPBG00000011751)	CCDC57 (ENSCPBG00000013077)	SLC16A3 (ENSCPBG00000013078)	CSNK1D (ENSCPBG00000013080)
Three-toed box turtle	MODERN SPECIES	1537																RAC3 (ENSTMTG00000018968) ##22	DCXR (ENSTMTG00000018981)
Chinese turtle	MODERN SPECIES	732		MCRIP1 (ENSPSIG00000017780)	P4HB (ENSPSIG00000017694)	ARHGDIA (ENSPSIG00000017574)	ALYREF (ENSPSIG00000017541)	ANAPC11 (ENSPSIG00000017538)	PCYT2 (ENSPSIG00000016328)	SIRT7 (ENSPSIG00000016168)	MAFG (ENSPSIG00000015955)	ENSPSIG00000015420	MYADML2 (ENSPSIG00000000650)	NOTUM (ENSPSIG00000015016)	ASPSCR1 (ENSPSIG00000014415)	CENPX (ENSPSIG00000014344)	LRRC45 (ENSPSIG00000013415)	RAC3 (ENSPSIG00000013271) ##22	DCXR (ENSPSIG00000012771)
Archosauria	ANCESTRAL SPECIES	12	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00950000184814	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT01070000255542	ENSGT00940000153536.a.b
Aves	ANCESTRAL SPECIES	17	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00950000184814	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT01070000255542	ENSGT00940000153536.a.b
African ostrich	MODERN SPECIES	398	ENSSCUG00000006218	ARL16 (ENSSCUG00000006222)	HGS (ENSSCUG00000006223)	SLC25A10 (ENSSCUG00000006229)	PPP1R27 (ENSSCUG00000006233)	P4HB (ENSSCUG00000006235)	ARHGDIA (ENSSCUG00000006238)	PCYT2 (ENSSCUG00000006240)	SIRT7 (ENSSCUG00000006245)	MAFG (ENSSCUG00000006250)	ENSSCUG00000006253	MYADML2 (ENSSCUG00000006255)	NOTUM (ENSSCUG00000006259)	ASPSCR1 (ENSSCUG00000006263)	LRRC45 (ENSSCUG00000006270)	RAC3 (ENSSCUG00000006273) ##22	DCXR (ENSSCUG00000006278)	RFNG (ENSSCUG00000006284)	GPS1 (ENSSCUG00000006295)	DUS1L (ENSSCUG00000006305)	FASN (ENSSCUG00000006321)	SLC16A3 (ENSSCUG00000006323)	CSNK1D (ENSSCUG00000006328)
Neognathae	ANCESTRAL SPECIES	17	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00950000184814	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT01070000255542	ENSGT00940000153536.a.b
Galloanserae	ANCESTRAL SPECIES	19	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00950000184814	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT01070000255542	ENSGT00940000153536.a.b
Phasianidae	ANCESTRAL SPECIES	18	ENSGT00940000159603	ENSGT00940000157351.s	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT01070000255542	ENSGT00940000153536.a.b	ENSGT00930000151032.B.k.b	ENSGT00520000062027	ENSGT00940000157800.a	ENSGT00390000007870	ENSGT01100000263555.b	ENSGT00950000183187.B
Phasianidae_b	ANCESTRAL SPECIES	32											ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT01070000255542	ENSGT00940000153536.a.b	ENSGT00930000151032.B.k.b	ENSGT00940000157800.b	ENSGT00520000062027	ENSGT00940000157800.a	ENSGT00390000007870	ENSGT01100000263555.b
Turkey	MODERN SPECIES	12	SAP30BP (ENSMGAG00000004899)	ENSMGAG00000004816	GALK1 (ENSMGAG00000004797)	ENSMGAG00000004963	ENSMGAG00000020869	ENSMGAG00000022889	ENSMGAG00000004971	ENSMGAG00000004920	ENSMGAG00000005559	ENSMGAG00000018301	ENSMGAG00000005530	ENSMGAG00000005000	ENSMGAG00000005146	ENSMGAG00000005163	RFNG (ENSMGAG00000005207)	ENSMGAG00000005256 ##22	ENSMGAG00000005237	ENSMGAG00000005276	ENSMGAG00000020560	ASPSCR1 (ENSMGAG00000005293)	ENSMGAG00000015417	ENSMGAG00000005309	ENSMGAG00000005323	MAFG (ENSMGAG00000021829)	SIRT7 (ENSMGAG00000005333)	ENSMGAG00000022871	ENSMGAG00000018341	ENSMGAG00000018917	ARHGDIA (ENSMGAG00000005399)	PPP1R27 (ENSMGAG00000005431)	P4HB (ENSMGAG00000005412)
Chicken	MODERN SPECIES	9	MMD (ENSGALG00010029254)	HLF (ENSGALG00010029244)	STXBP4 (ENSGALG00010029241)	COX11 (ENSGALG00010029237)	TOM1L1 (ENSGALG00010029234)	KIF2B (ENSGALG00010029949)	CA10 (ENSGALG00010029232)	UTP18 (ENSGALG00010029227)	MBTD1 (ENSGALG00010029226)	NME2 (ENSGALG00010029223)	MYADML2 (ENSGALG00010029948)	NOTUM (ENSGALG00010029178)	ASPSCR1 (ENSGALG00010029177)	CENPX (ENSGALG00010029175)	LRRC45 (ENSGALG00010029172)	RAC3 (ENSGALG00010029165) ##22	DCXR (ENSGALG00010029170)	RFNG (ENSGALG00010029168)	GPS1 (ENSGALG00010030102)	DUS1L (ENSGALG00010029160)	FASN (ENSGALG00010029895)	ENSGALG00010029879	SLC16A3 (ENSGALG00010029864)	CSNK1D (ENSGALG00010029859)	ENSGALG00010029850	SMIM5 (ENSGALG00010029841)	RECQL5 (ENSGALG00010029835)	SAP30BP (ENSGALG00010029812)	ITGB4 (ENSGALG00010029804)	GALK1 (ENSGALG00010029791)	ENSGALG00010029788
Japanese quail	MODERN SPECIES	9	PPP1R27 (ENSCJPG00005021162)	P4HB (ENSCJPG00005021158)	ARHGDIA (ENSCJPG00005021157)	ALYREF (ENSCJPG00005021156)	ANAPC11 (ENSCJPG00005021155)	NPB (ENSCJPG00005021154)	PCYT2 (ENSCJPG00005021110)	SIRT7 (ENSCJPG00005021108)	MAFG (ENSCJPG00005021107)	ENSCJPG00005021103	MYADML2 (ENSCJPG00005021101)	NOTUM (ENSCJPG00005021098)	ASPSCR1 (ENSCJPG00005021097)	CENPX (ENSCJPG00005021096)	LRRC45 (ENSCJPG00005021082)	RAC3 (ENSCJPG00005021081) ##22	DCXR (ENSCJPG00005021080)	RFNG (ENSCJPG00005021079)	GPS1 (ENSCJPG00005021070)	DUS1L (ENSCJPG00005021069)	FASN (ENSCJPG00005020907)	SLC16A3 (ENSCJPG00005020880)	ENSCJPG00005020879	CSNK1D (ENSCJPG00005020878)	ENSCJPG00005020877	SMIM5 (ENSCJPG00005020876)	RECQL5 (ENSCJPG00005020875)	ENSCJPG00005020874	SAP30BP (ENSCJPG00005020873)	ITGB4 (ENSCJPG00005020820)	GALK1 (ENSCJPG00005020819)
Anatidae	ANCESTRAL SPECIES	63	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00950000184814	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000158181	ENSGT00940000153536.a.b
Pink-footed goose	MODERN SPECIES	276	P4HB (ENSABRG00000011233)	ARHGDIA (ENSABRG00000011188)	ALYREF (ENSABRG00000011176)	ENSABRG00000011165	ANAPC11 (ENSABRG00000011160)	NPB (ENSABRG00000011159)	PCYT2 (ENSABRG00000010865)	SIRT7 (ENSABRG00000010708)	MAFG (ENSABRG00000010690)	ENSABRG00000010686	MYADML2 (ENSABRG00000010684)	NOTUM (ENSABRG00000010679)	ASPSCR1 (ENSABRG00000010659)	CENPX (ENSABRG00000010656)	LRRC45 (ENSABRG00000010618)	RAC3 (ENSABRG00000010609) ##22	DCXR (ENSABRG00000010601)	RFNG (ENSABRG00000010590)	GPS1 (ENSABRG00000010566)	DUS1L (ENSABRG00000010553)	FASN (ENSABRG00000010530)	SLC16A3 (ENSABRG00000010508)	ENSABRG00000010496	CSNK1D (ENSABRG00000010485)
Duck	MODERN SPECIES	9	ENSAPLG00000017387	ENSAPLG00000002081	TBC1D16 (ENSAPLG00000014159)	CBX4 (ENSAPLG00000023770)	ENPP7 (ENSAPLG00000021105)	RBFOX3 (ENSAPLG00000029113)	SLC25A10 (ENSAPLG00000014178)	ENSAPLG00000020957	P4HB (ENSAPLG00000014245)	ARHGDIA (ENSAPLG00000017298)	NPB (ENSAPLG00000022175)	PCYT2 (ENSAPLG00000014755)	MYADML2 (ENSAPLG00000002229)	NOTUM (ENSAPLG00000015427)	LRRC45 (ENSAPLG00000015594)	RAC3 (ENSAPLG00000015982) ##22	RFNG (ENSAPLG00000016029)	GPS1 (ENSAPLG00000016288)	DUS1L (ENSAPLG00000001965)	FASN (ENSAPLG00000002703)	SLC16A3 (ENSAPLG00000004860)	CSNK1D (ENSAPLG00000004969)
Neognathae_b	ANCESTRAL SPECIES	19	ENSGT00940000159603	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b
Passeriformes	ANCESTRAL SPECIES	17	ENSGT00940000161850	ENSGT00940000159603	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000158181	ENSGT00940000153536.a.b
Great tit	MODERN SPECIES	8	ENSPMJG00000015264	PPP1R27 (ENSPMJG00000015263)	P4HB (ENSPMJG00000015262)	ARHGDIA (ENSPMJG00000015261)	ALYREF (ENSPMJG00000015260)	ENSPMJG00000015258	PCYT2 (ENSPMJG00000015230)	SIRT7 (ENSPMJG00000015229)	MAFG (ENSPMJG00000015228)	ENSPMJG00000015227	MYADML2 (ENSPMJG00000015226)	NOTUM (ENSPMJG00000015225)	ASPSCR1 (ENSPMJG00000015224)	CENPX (ENSPMJG00000015223)	LRRC45 (ENSPMJG00000015222)	RAC3 (ENSPMJG00000015221) ##22	DCXR (ENSPMJG00000015220)	RFNG (ENSPMJG00000015219)	GPS1 (ENSPMJG00000015218)	DUS1L (ENSPMJG00000015170)	FASN (ENSPMJG00000015169)	SLC16A3 (ENSPMJG00000015167)	CSNK1D (ENSPMJG00000015166)
Passeriformes_d	ANCESTRAL SPECIES	17	ENSGT00940000161850	ENSGT00940000159603	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853.b	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000158181	ENSGT00940000153536.a.b
Flycatcher	MODERN SPECIES	8	MCRIP1 (ENSFALG00000011985)	PPP1R27 (ENSFALG00000028022)	P4HB (ENSFALG00000011969)	ARHGDIA (ENSFALG00000028901)	ALYREF (ENSFALG00000011923)	ANAPC11 (ENSFALG00000025589)	PCYT2 (ENSFALG00000011906)	MAFG (ENSFALG00000024283)	PYCR1 (ENSFALG00000011847)	MYADML2 (ENSFALG00000015000)	NOTUM (ENSFALG00000011833)	ENSFALG00000024215	ENSFALG00000011820	ENSFALG00000011812	LRRC45 (ENSFALG00000011778)	RAC3 (ENSFALG00000026223) ##22	DCXR (ENSFALG00000011767)	RFNG (ENSFALG00000011734)	GPS1 (ENSFALG00000011716)	DUS1L (ENSFALG00000011707)	FASN (ENSFALG00000011694)	SLC16A3 (ENSFALG00000025632)	CSNK1D (ENSFALG00000011662)
Passeriformes_g	ANCESTRAL SPECIES	20	ENSGT00940000157969	ENSGT00940000161850	ENSGT00940000159603	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853.b	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000158181	ENSGT00940000153536.a.b
Passeroidea	ANCESTRAL SPECIES	19	ENSGT00940000156783	ENSGT00940000157969	ENSGT00940000161850	ENSGT00940000159603	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075065	ENSGT00940000160070	ENSGT00950000183044.a.a.a	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853.b	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000158181	ENSGT00940000153536.a.b
Zebra finch	MODERN SPECIES	9	MRPL12 (ENSTGUG00000026791)	SLC25A10 (ENSTGUG00000003450)	GCGR (ENSTGUG00000021801)	ENSTGUG00000029350	P4HB (ENSTGUG00000003472)	ARHGDIA (ENSTGUG00000003498)	ALYREF (ENSTGUG00000003513)	PCYT2 (ENSTGUG00000018159)	MAFG (ENSTGUG00000025880)	PYCR1 (ENSTGUG00000003568)	MYADML2 (ENSTGUG00000018944)	NOTUM (ENSTGUG00000003588)	ASPSCR1 (ENSTGUG00000003598)	CENPX (ENSTGUG00000021305)	LRRC45 (ENSTGUG00000003614)	RAC3 (ENSTGUG00000003640) ##22	DCXR (ENSTGUG00000003657)	RFNG (ENSTGUG00000003665)	GPS1 (ENSTGUG00000003677)	DUS1L (ENSTGUG00000003700)	FASN (ENSTGUG00000003719)	SLC16A3 (ENSTGUG00000003892)	CSNK1D (ENSTGUG00000003904)	ABCA5 (ENSTGUG00000003939)	ENSTGUG00000024654	ENSTGUG00000003994	FAM20A (ENSTGUG00000004080)	PRKAR1A (ENSTGUG00000004087)	WIPI1 (ENSTGUG00000004110)	ARSG (ENSTGUG00000004129)	SLC16A6 (ENSTGUG00000004137)
Common canary	MODERN SPECIES	27	ENSSCAG00000011219	HGS (ENSSCAG00000011212)	SLC25A10 (ENSSCAG00000011205)	GCGR (ENSSCAG00000011196)	PPP1R27 (ENSSCAG00000011194)	P4HB (ENSSCAG00000011084)	ARHGDIA (ENSSCAG00000011033)	ALYREF (ENSSCAG00000011009)	PCYT2 (ENSSCAG00000010923)	MAFG (ENSSCAG00000010892)	ENSSCAG00000010880	MYADML2 (ENSSCAG00000010870)	NOTUM (ENSSCAG00000010854)	ASPSCR1 (ENSSCAG00000010847)	LRRC45 (ENSSCAG00000010677)	RAC3 (ENSSCAG00000010611) ##22	DCXR (ENSSCAG00000010604)	RFNG (ENSSCAG00000010584)	GPS1 (ENSSCAG00000010573)	DUS1L (ENSSCAG00000010566)	FASN (ENSSCAG00000010546)	SLC16A3 (ENSSCAG00000010534)	CSNK1D (ENSSCAG00000010525)
Medium ground finch	MODERN SPECIES	275	HGS (ENSGFOG00000008697)	SLC25A10 (ENSGFOG00000008692)	GCGR (ENSGFOG00000008687)	PPP1R27 (ENSGFOG00000008676)	P4HB (ENSGFOG00000008177)	ARHGDIA (ENSGFOG00000008160)	ALYREF (ENSGFOG00000008154)	PCYT2 (ENSGFOG00000008139)	SIRT7 (ENSGFOG00000008132)	MAFG (ENSGFOG00000008127)	ENSGFOG00000008097	MYADML2 (ENSGFOG00000008092)	NOTUM (ENSGFOG00000008075)	ASPSCR1 (ENSGFOG00000008057)	LRRC45 (ENSGFOG00000007947)	RAC3 (ENSGFOG00000007929) ##22	DCXR (ENSGFOG00000007921)	RFNG (ENSGFOG00000007548)	GPS1 (ENSGFOG00000007516)	DUS1L (ENSGFOG00000007480)	FASN (ENSGFOG00000007457)	SLC16A3 (ENSGFOG00000007445)	CSNK1D (ENSGFOG00000007421)
Neognathae_c	ANCESTRAL SPECIES	23	ENSGT00940000161850	ENSGT00940000159603	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b
Golden eagle	MODERN SPECIES	21	GCGR (ENSACCG00020000726)	ENSACCG00020000750	PPP1R27 (ENSACCG00020000769)	P4HB (ENSACCG00020000794)	ARHGDIA (ENSACCG00020000821)	ALYREF (ENSACCG00020000850)	ENSACCG00020000870	PCYT2 (ENSACCG00020000884)	SIRT7 (ENSACCG00020000914)	MAFG (ENSACCG00020000933)	ENSACCG00020000945	MYADML2 (ENSACCG00020000961)	NOTUM (ENSACCG00020000977)	ASPSCR1 (ENSACCG00020001016)	LRRC45 (ENSACCG00020001234)	RAC3 (ENSACCG00020001622) ##22	DCXR (ENSACCG00020001685)	RFNG (ENSACCG00020001702)	GPS1 (ENSACCG00020001719)	DUS1L (ENSACCG00020001736)	FASN (ENSACCG00020001770)	CCDC57 (ENSACCG00020001808)	SLC16A3 (ENSACCG00020001846)	CSNK1D (ENSACCG00020001878)
Kakapo	MODERN SPECIES	8	GCGR (ENSSHBG00005015523)	MCRIP1 (ENSSHBG00005015533)	PPP1R27 (ENSSHBG00005015539)	P4HB (ENSSHBG00005015547)	ARHGDIA (ENSSHBG00005000712)	ALYREF (ENSSHBG00005011088)	ENSSHBG00005011107	PCYT2 (ENSSHBG00005011146)	SIRT7 (ENSSHBG00005011213)	MAFG (ENSSHBG00005011241)	ENSSHBG00005011260	NOTUM (ENSSHBG00005011282)	ASPSCR1 (ENSSHBG00005011310)	ENSSHBG00005011342	LRRC45 (ENSSHBG00005011369)	RAC3 (ENSSHBG00005011395) ##22	DCXR (ENSSHBG00005011406)	RFNG (ENSSHBG00005011437)	GPS1 (ENSSHBG00005011463)	DUS1L (ENSSHBG00005011481)	FASN (ENSSHBG00005011514)	SLC16A3 (ENSSHBG00005011548)	CSNK1D (ENSSHBG00005011576)
Australian saltwater crocodile	MODERN SPECIES	8														ASPSCR1 (ENSCPRG00005005692)	LRRC45 (ENSCPRG00005005683)	RAC3 (ENSCPRG00005005679) ##22	DCXR (ENSCPRG00005005664)	RFNG (ENSCPRG00005005650)	GPS1 (ENSCPRG00005005623)	DUS1L (ENSCPRG00005005564)	FASN (ENSCPRG00005005500)	CCDC57 (ENSCPRG00005005482)	SLC16A3 (ENSCPRG00005005474)	ENSCPRG00005005469	CSNK1D (ENSCPRG00005005453)
Mammalia	ANCESTRAL SPECIES	21	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00950000184814	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00910000147748	ENSGT00940000153536.a.b
Platypus	MODERN SPECIES	45	MCRIP1 (ENSOANG00000047679)	PPP1R27 (ENSOANG00000047327)	P4HB (ENSOANG00000006117)	ARHGDIA (ENSOANG00000043105)	ALYREF (ENSOANG00000043693)	ENSOANG00000040764	ANAPC11 (ENSOANG00000037265)	PCYT2 (ENSOANG00000042255)	SIRT7 (ENSOANG00000050375)	MAFG (ENSOANG00000015302)	ENSOANG00000005270	NOTUM (ENSOANG00000005271)	ENSOANG00000047793	ENSOANG00000041923	LRRC45 (ENSOANG00000009662)	RAC3 (ENSOANG00000043748) ##22	DCXR (ENSOANG00000031279)	RFNG (ENSOANG00000043623)	GPS1 (ENSOANG00000036167)	DUS1L (ENSOANG00000051139)	ENSOANG00000010560	SLC16A3 (ENSOANG00000001868)	CSNK1D (ENSOANG00000010562)	MAP2K4 (ENSOANG00000048292)	ELAC2 (ENSOANG00000038680)
Theria	ANCESTRAL SPECIES	9	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00950000184814	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00910000147748	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT01090000260051.b.a.b	ENSGT00940000157017.a.b.a	ENSGT00390000005895	ENSGT00390000014852.a
Marsupialia	ANCESTRAL SPECIES	13	ENSGT00940000159603	ENSGT00940000157351.i	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a.c.b	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.h	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT01070000253837	ENSGT00940000153759.a.b	ENSGT00940000154705.A	ENSGT00390000005412	ENSGT00940000155563
Marsupialia_b	ANCESTRAL SPECIES	16	ENSGT00940000159603	ENSGT00940000157351.i	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a.c.b	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.h	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT01070000253837	ENSGT00940000153759.a.b	ENSGT00940000154705.A	ENSGT00390000005412	ENSGT00940000155563
Diprotodontia	ANCESTRAL SPECIES	9	ENSGT00940000159603	ENSGT00940000157351.i	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a.c.b	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.h	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT01070000253837	ENSGT00940000153759.a.b	ENSGT00940000154705.A	ENSGT00390000005412	ENSGT00940000155563
Diprotodontia_a	ANCESTRAL SPECIES	11	ENSGT00940000159603	ENSGT00940000157351.i	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a.c.b	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.h	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT01070000253837	ENSGT00940000153759.a.b	ENSGT00940000154705.A	ENSGT00390000005412	ENSGT00940000155563
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1184														ENSVURG00010016101	ENSVURG00010016110	ENSVURG00010016122 ##22	ENSVURG00010016125	ENSVURG00010016138
Common wonbat	MODERN SPECIES	571	PPP1R27 (ENSVURG00010008725)	ENSVURG00010008703	ARHGDIA (ENSVURG00010008692)	ALYREF (ENSVURG00010008666)	ENSVURG00010008630	NPB (ENSVURG00010008622)	PCYT2 (ENSVURG00010008544)	SIRT7 (ENSVURG00010008529)	MAFG (ENSVURG00010008523)	ENSVURG00010008481	MYADML2 (ENSVURG00010008473)	NOTUM (ENSVURG00010008453)	ASPSCR1 (ENSVURG00010008414)	ENSVURG00010008390	ENSVURG00010008371	ENSVURG00010008364 ##22	ENSVURG00010008356	ENSVURG00010008345
koala	MODERN SPECIES	87	ENSPCIG00000029573	ARHGDIA (ENSPCIG00000029571)	ENSPCIG00000030716	ANAPC11 (ENSPCIG00000034264)	PCYT2 (ENSPCIG00000029555)	ENSPCIG00000029558	SIRT7 (ENSPCIG00000029553)	ENSPCIG00000036289	MAFG (ENSPCIG00000029551)	ENSPCIG00000029546	MYADML2 (ENSPCIG00000029543)	NOTUM (ENSPCIG00000029541)	ASPSCR1 (ENSPCIG00000009156)	ENSPCIG00000009158	LRRC45 (ENSPCIG00000009160)	RAC3 (ENSPCIG00000032841) ##22	ENSPCIG00000009162	ENSPCIG00000023879	ENSPCIG00000023880	GPS1 (ENSPCIG00000023883)	DUS1L (ENSPCIG00000023887)	FASN (ENSPCIG00000023890)	CCDC57 (ENSPCIG00000006428)	SLC16A3 (ENSPCIG00000028081)	CSNK1D (ENSPCIG00000028077)	ENSPCIG00000028075	PECAM1 (ENSPCIG00000014423)	POLG2 (ENSPCIG00000014426)	DDX5 (ENSPCIG00000014428)	CEP95 (ENSPCIG00000019319)	SMURF2 (ENSPCIG00000019300)
Wallaby	MODERN SPECIES	7806															LRRC45 (ENSMEUG00000006172)	RAC3 (ENSMEUG00000006196) ##22	DCXR (ENSMEUG00000006203)
Opossum	MODERN SPECIES	1	ENSMODG00000003000	ARHGDIA (ENSMODG00000003014)	ALYREF (ENSMODG00000003030)	ANAPC11 (ENSMODG00000045017)	NPB (ENSMODG00000003041)	PCYT2 (ENSMODG00000003065)	SIRT7 (ENSMODG00000003076)	MAFG (ENSMODG00000003081)	ENSMODG00000028952	ENSMODG00000003122	MYADML2 (ENSMODG00000003130)	ENSMODG00000046044	NOTUM (ENSMODG00000003147)	ENSMODG00000046847	LRRC45 (ENSMODG00000003220)	RAC3 (ENSMODG00000003244) ##22	ENSMODG00000003255	ENSMODG00000041888	RFNG (ENSMODG00000003286)	DUS1L (ENSMODG00000003351)	GPS1 (ENSMODG00000003331)	FASN (ENSMODG00000003423)	ENSMODG00000041427	ENSMODG00000003452	CCDC57 (ENSMODG00000003443)	SLC16A3 (ENSMODG00000003551)	CSNK1D (ENSMODG00000003587)	ENSMODG00000025674	ENSMODG00000025673	POLG2 (ENSMODG00000003701)	ENSMODG00000003743
Eutheria	ANCESTRAL SPECIES	4	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00950000184814	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00910000147748	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00940000156819.a.b	ENSGT00940000157017.a.b.a	ENSGT00390000005895	ENSGT00390000014852.a
Atlantogenata	ANCESTRAL SPECIES	88	ENSGT00940000159603	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00390000014279	ENSGT00390000005895	ENSGT00390000014852.a	ENSGT00390000004691	ENSGT00940000153514.a.b	ENSGT00940000155709
Afrotheria	ANCESTRAL SPECIES	108	ENSGT00940000159603	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00390000014279	ENSGT00390000005895	ENSGT00390000014852.a	ENSGT00390000004691	ENSGT00940000153514.a.b	ENSGT00940000155709
Tenrec	DUPLICATION
Tenrec	MODERN SPECIES	7580															ENSETEG00000012899	ENSETEG00000012902 ##22	DCXR (ENSETEG00000012904)
Tenrec	MODERN SPECIES	11603																ENSETEG00000014524 ##22
Afrotheria_a	ANCESTRAL SPECIES	110	ENSGT00940000159603	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00390000014279	ENSGT00390000005895	ENSGT00390000014852.a	ENSGT00390000004691	ENSGT00940000153514.a.b	ENSGT00940000155709
Hyrax	MODERN SPECIES	5308													ENSPCAG00000009695	CENPX (ENSPCAG00000009760)	LRRC45 (ENSPCAG00000009819)	RAC3 (ENSPCAG00000009949) ##22	DCXR (ENSPCAG00000009989)
Boreoeutheria	ANCESTRAL SPECIES	4	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00950000184814	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148243	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00910000147748	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000156819.a.b	ENSGT00940000157017.a.b.a
Euarchontoglires	ANCESTRAL SPECIES	4	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00950000184814	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148243	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00910000147748	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000156819.a.b	ENSGT00940000157017.a.b.a
Primates	ANCESTRAL SPECIES	3	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148243	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00910000147748	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000157017.a.b.a	ENSGT00390000005895
Haplorrhini	ANCESTRAL SPECIES	6	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148243	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00910000147748	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000157017.a.b.a	ENSGT00390000005895	ENSGT00390000014852.a
Tarsier	MODERN SPECIES	2279													ENSTSYG00000032306	CENPX (ENSTSYG00000026501)	LRRC45 (ENSTSYG00000030809)	RAC3 (ENSTSYG00000014772) ##22	DCXR (ENSTSYG00000010675)	RFNG (ENSTSYG00000032956)	GPS1 (ENSTSYG00000028986)	DUS1L (ENSTSYG00000010792)	FASN (ENSTSYG00000027940)	CCDC57 (ENSTSYG00000002524)	SLC16A3 (ENSTSYG00000000560)	CSNK1D (ENSTSYG00000027276)
Simiiformes	ANCESTRAL SPECIES	7	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148243	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00910000147748	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000157017.a.b.a	ENSGT00390000005895	ENSGT00390000014852.a
Catarrhini	ANCESTRAL SPECIES	8	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148243	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00910000147748	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000157017.a.b.a	ENSGT00390000005895	ENSGT00390000014852.a
Hominoidea	ANCESTRAL SPECIES	13	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148054	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00910000147748	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000157017.a.b.a	ENSGT00390000005895	ENSGT00390000014852.a
Gibbon	MODERN SPECIES	4	ACTG1 (ENSNLEG00000013385) ##36	ENSNLEG00000035531 ##35	FAAP100 (ENSNLEG00000013759)	NPLOC4 (ENSNLEG00000013771)	ENSNLEG00000013827	OXLD1 (ENSNLEG00000027533)	ENSNLEG00000013830	ARL16 (ENSNLEG00000013831)	HGS (ENSNLEG00000013843)	MRPL12 (ENSNLEG00000035133)	ENSNLEG00000028861	ENSNLEG00000036032	ENSNLEG00000027619	ENSNLEG00000033192	LRRC45 (ENSNLEG00000013927)	RAC3 (ENSNLEG00000028590) ##22	DCXR (ENSNLEG00000030316)	ENSNLEG00000018340	ENSNLEG00000031489	GPS1 (ENSNLEG00000014009)	DUS1L (ENSNLEG00000014021)	ENSNLEG00000014036	ENSNLEG00000014053	SLC16A3 (ENSNLEG00000014062)	ENSNLEG00000031092	CSNK1D (ENSNLEG00000014083)	CD7 (ENSNLEG00000014136)	TXNDC9 (ENSNLEG00000014159)	EIF5B (ENSNLEG00000014172)	REV1 (ENSNLEG00000014240)	AFF3 (ENSNLEG00000014317)
Hominidae	ANCESTRAL SPECIES	16	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148054	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00910000147748	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000157017.a.b.a	ENSGT00390000005895	ENSGT00390000014852.a
Orangutan	MODERN SPECIES	8	MCRIP1 (ENSPPYG00000035026)	PPP1R27 (ENSPPYG00000008746)	P4HB (ENSPPYG00000008747)	ENSPPYG00000008748	ALYREF (ENSPPYG00000008749)	ANAPC11 (ENSPPYG00000008750)	NPB (ENSPPYG00000008751)	PCYT2 (ENSPPYG00000008752)	SIRT7 (ENSPPYG00000008753)	MAFG (ENSPPYG00000040384)	PYCR1 (ENSPPYG00000008755)	NOTUM (ENSPPYG00000008758)	ASPSCR1 (ENSPPYG00000008760)	CENPX (ENSPPYG00000008761)	LRRC45 (ENSPPYG00000008762)	RAC3 (ENSPPYG00000008763) ##22	DCXR (ENSPPYG00000008764)	RFNG (ENSPPYG00000037173)	GPS1 (ENSPPYG00000008766)	ENSPPYG00000008767	FASN (ENSPPYG00000008768)	CCDC57 (ENSPPYG00000008769)	SLC16A3 (ENSPPYG00000008770)	CSNK1D (ENSPPYG00000008771)	CD7 (ENSPPYG00000008773)	SECTM1 (ENSPPYG00000008775)	TEX19 (ENSPPYG00000035353)	UTS2R (ENSPPYG00000008777)	OGFOD3 (ENSPPYG00000008778)	ENSPPYG00000008779	ENSPPYG00000008780
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	1	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148054	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00910000147748	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000157017.a.b.a	ENSGT00390000005895	ENSGT00390000014852.a
Gorilla	MODERN SPECIES	18	P4HB (ENSGGOG00000023842)	ENSGGOG00000011564	ALYREF (ENSGGOG00000013935)	ENSGGOG00000013938	NPB (ENSGGOG00000013944)	PCYT2 (ENSGGOG00000013953)	SIRT7 (ENSGGOG00000013961)	ENSGGOG00000037341	MAFG (ENSGGOG00000026754)	PYCR1 (ENSGGOG00000013977)	MYADML2 (ENSGGOG00000038217)	NOTUM (ENSGGOG00000034813)	ENSGGOG00000011578	ENSGGOG00000011589	LRRC45 (ENSGGOG00000011592)	RAC3 (ENSGGOG00000011608) ##22	DCXR (ENSGGOG00000011610)	ENSGGOG00000011617	GPS1 (ENSGGOG00000011626)	DUS1L (ENSGGOG00000011636)	FASN (ENSGGOG00000011647)	CCDC57 (ENSGGOG00000034819)	SLC16A3 (ENSGGOG00000000072)	ENSGGOG00000036692	CSNK1D (ENSGGOG00000000074)	CD7 (ENSGGOG00000009140)	SECTM1 (ENSGGOG00000009149)	TEX19 (ENSGGOG00000038115)	OGFOD3 (ENSGGOG00000001580)	ENSGGOG00000001583	CYBC1 (ENSGGOG00000001586)
Homo/Pan group	ANCESTRAL SPECIES	2	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148054	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00910000147748	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000157017.a.b.a	ENSGT00390000005895	ENSGT00390000014852.a
Pan	ANCESTRAL SPECIES	3	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00940000164946	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148054	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00940000165025	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00910000147748	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000157017.a.b.a	ENSGT00390000005895	ENSGT00390000014852.a
Chimpanzee	MODERN SPECIES	8	P4HB (ENSPTRG00000009772)	ENSPTRG00000044598	ARHGDIA (ENSPTRG00000009773)	ALYREF (ENSPTRG00000009774)	ANAPC11 (ENSPTRG00000009775)	NPB (ENSPTRG00000045453)	PCYT2 (ENSPTRG00000009776)	SIRT7 (ENSPTRG00000030739)	MAFG (ENSPTRG00000052436)	PYCR1 (ENSPTRG00000009777)	MYADML2 (ENSPTRG00000049454)	NOTUM (ENSPTRG00000009781)	ASPSCR1 (ENSPTRG00000009782)	CENPX (ENSPTRG00000009783)	LRRC45 (ENSPTRG00000009784)	RAC3 (ENSPTRG00000014331) ##22	DCXR (ENSPTRG00000009786)	RFNG (ENSPTRG00000009787)	GPS1 (ENSPTRG00000009788)	DUS1L (ENSPTRG00000009790)	FASN (ENSPTRG00000009791)	CCDC57 (ENSPTRG00000009794)	SLC16A3 (ENSPTRG00000009795)	CSNK1D (ENSPTRG00000009796)	ENSPTRG00000048972	CD7 (ENSPTRG00000009798)	SECTM1 (ENSPTRG00000009799)	TEX19 (ENSPTRG00000043804)	UTS2R (ENSPTRG00000009801)	OGFOD3 (ENSPTRG00000009802)	HEXD (ENSPTRG00000009803)
Human	MODERN SPECIES	8	PPP1R27 (ENSG00000182676)	P4HB (ENSG00000185624)	ARHGDIA (ENSG00000141522)	ALYREF (ENSG00000183684)	ANAPC11 (ENSG00000141552)	NPB (ENSG00000183979)	PCYT2 (ENSG00000185813)	SIRT7 (ENSG00000187531)	MAFG (ENSG00000197063)	PYCR1 (ENSG00000183010)	MYADML2 (ENSG00000185105)	NOTUM (ENSG00000185269)	ASPSCR1 (ENSG00000169696)	CENPX (ENSG00000169689)	LRRC45 (ENSG00000169683)	RAC3 (ENSG00000169750) ##22	DCXR (ENSG00000169738)	RFNG (ENSG00000169733)	GPS1 (ENSG00000169727)	DUS1L (ENSG00000169718)	FASN (ENSG00000169710)	CCDC57 (ENSG00000176155)	SLC16A3 (ENSG00000141526)	CSNK1D (ENSG00000141551)	CD7 (ENSG00000173762)	SECTM1 (ENSG00000141574)	TEX19 (ENSG00000182459)	UTS2R (ENSG00000181408)	OGFOD3 (ENSG00000181396)	HEXD (ENSG00000169660)	CYBC1 (ENSG00000178927)
Cercopithecidae	ANCESTRAL SPECIES	6	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148243	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00910000147748	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000157017.a.b.a	ENSGT00390000005895	ENSGT00390000014852.a
Cercopithecinae	ANCESTRAL SPECIES	4	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148243	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000157017.a.b.a	ENSGT00390000005895	ENSGT00390000014852.a	ENSGT00390000004691
Cercopithecinae_a	ANCESTRAL SPECIES	4	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00940000164946	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148243	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000157017.a.b.a	ENSGT00390000005895	ENSGT00390000014852.a	ENSGT00390000004691
Macaca	ANCESTRAL SPECIES	4	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00940000164946	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148054	ENSGT00910000148243	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000157017.a.b.a	ENSGT00390000005895	ENSGT00390000014852.a	ENSGT00390000004691
Macaca_a	ANCESTRAL SPECIES	4	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00940000164946	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148054	ENSGT00910000148243	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000157017.a.b.a	ENSGT00390000005895	ENSGT00390000014852.a	ENSGT00390000004691
Rhesus	MODERN SPECIES	7	ARHGDIA (ENSMMUG00000009949)	ALYREF (ENSMMUG00000012884)	ANAPC11 (ENSMMUG00000012887)	NPB (ENSMMUG00000012888)	PCYT2 (ENSMMUG00000012889)	SIRT7 (ENSMMUG00000012890)	ENSMMUG00000056309	MAFG (ENSMMUG00000012893)	PYCR1 (ENSMMUG00000012895)	MYADML2 (ENSMMUG00000012898)	NOTUM (ENSMMUG00000049343)	ASPSCR1 (ENSMMUG00000010887)	CENPX (ENSMMUG00000050845)	LRRC45 (ENSMMUG00000010892)	DCXR (ENSMMUG00000059256)	RAC3 (ENSMMUG00000010895) ##22	RFNG (ENSMMUG00000012799)	GPS1 (ENSMMUG00000012800)	DUS1L (ENSMMUG00000012803)	FASN (ENSMMUG00000012811)	CCDC57 (ENSMMUG00000012818)	SLC16A3 (ENSMMUG00000010121)	CSNK1D (ENSMMUG00000018329)	CD7 (ENSMMUG00000064781)	TEX19 (ENSMMUG00000044068)	UTS2R (ENSMMUG00000001119)	OGFOD3 (ENSMMUG00000056911)	HEXD (ENSMMUG00000019221)	CYBC1 (ENSMMUG00000019222)	ENSMMUG00000059025	NARF (ENSMMUG00000019224)
Crab-eating macaque	MODERN SPECIES	7	OXLD1 (ENSMFAG00000043539)	CCDC137 (ENSMFAG00000036416)	ALYREF (ENSMFAG00000001394)	ENSMFAG00000043931	ENSMFAG00000052859	NPB (ENSMFAG00000061505)	PCYT2 (ENSMFAG00000000478)	ENSMFAG00000057977	MAFG (ENSMFAG00000050292)	PYCR1 (ENSMFAG00000040932)	MYADML2 (ENSMFAG00000053362)	NOTUM (ENSMFAG00000033597)	ASPSCR1 (ENSMFAG00000032150)	ENSMFAG00000052245	LRRC45 (ENSMFAG00000046218)	RAC3 (ENSMFAG00000007057) ##22	DCXR (ENSMFAG00000030901)	RFNG (ENSMFAG00000038569)	GPS1 (ENSMFAG00000035839)	DUS1L (ENSMFAG00000001187)	CCDC57 (ENSMFAG00000036159)	CSNK1D (ENSMFAG00000041414)	CD7 (ENSMFAG00000035707)	ENSMFAG00000046114	TEX19 (ENSMFAG00000051146)	ENSMFAG00000015792	OGFOD3 (ENSMFAG00000040871)	HEXD (ENSMFAG00000041634)	CYBC1 (ENSMFAG00000037540)	NARF (ENSMFAG00000003174)	FOXK2 (ENSMFAG00000044739)
Pig-tailed macaque	MODERN SPECIES	432	PPP1R27 (ENSMNEG00000039255)	P4HB (ENSMNEG00000041915)	ARHGDIA (ENSMNEG00000037888)	ALYREF (ENSMNEG00000043666)	ENSMNEG00000038736	NPB (ENSMNEG00000019552)	PCYT2 (ENSMNEG00000018724)	SIRT7 (ENSMNEG00000034220)	MAFG (ENSMNEG00000018366)	PYCR1 (ENSMNEG00000044253)	MYADML2 (ENSMNEG00000025054)	NOTUM (ENSMNEG00000041966)	ASPSCR1 (ENSMNEG00000034275)	ENSMNEG00000041358	LRRC45 (ENSMNEG00000028632)	RAC3 (ENSMNEG00000028547) ##22	DCXR (ENSMNEG00000034847)	RFNG (ENSMNEG00000042043)	GPS1 (ENSMNEG00000042489)	DUS1L (ENSMNEG00000010573)	FASN (ENSMNEG00000037965)	CCDC57 (ENSMNEG00000042659)	SLC16A3 (ENSMNEG00000022479)	CSNK1D (ENSMNEG00000034582)	CD7 (ENSMNEG00000032371)	SECTM1 (ENSMNEG00000029821)	UTS2R (ENSMNEG00000028249)	OGFOD3 (ENSMNEG00000008573)	HEXD (ENSMNEG00000006393)	CYBC1 (ENSMNEG00000000511)	NARF (ENSMNEG00000032240)
Cercopithecinae_b	ANCESTRAL SPECIES	19	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00940000164946	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148243	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT00940000156819.a.b	ENSGT00390000005895	ENSGT00390000014852.a	ENSGT00390000004691	ENSGT00940000153514.a.b
Cercopithecinae_d	ANCESTRAL SPECIES	15	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00940000164946	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148243	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00940000165025	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000005895	ENSGT00390000014852.a	ENSGT00390000004691	ENSGT00940000153514.a.b	ENSGT01100000264221
Sooty mangabey	MODERN SPECIES	137	PPP1R27 (ENSCATG00000040109)	P4HB (ENSCATG00000038858)	ARHGDIA (ENSCATG00000044701)	ALYREF (ENSCATG00000033169)	ENSCATG00000021685	NPB (ENSCATG00000044904)	PCYT2 (ENSCATG00000032599)	SIRT7 (ENSCATG00000041951)	MAFG (ENSCATG00000044575)	PYCR1 (ENSCATG00000026320)	MYADML2 (ENSCATG00000023637)	NOTUM (ENSCATG00000035542)	ASPSCR1 (ENSCATG00000039949)	ENSCATG00000037293	LRRC45 (ENSCATG00000039780)	RAC3 (ENSCATG00000029744) ##22	DCXR (ENSCATG00000043086)	RFNG (ENSCATG00000037695)	GPS1 (ENSCATG00000040045)	DUS1L (ENSCATG00000039553)	FASN (ENSCATG00000036312)	CCDC57 (ENSCATG00000036108)	SLC16A3 (ENSCATG00000037792)	CSNK1D (ENSCATG00000032974)	CD7 (ENSCATG00000043656)	SECTM1 (ENSCATG00000041695)	OGFOD3 (ENSCATG00000045085)	HEXD (ENSCATG00000040693)	CYBC1 (ENSCATG00000041494)	NARF (ENSCATG00000027370)	FOXK2 (ENSCATG00000040286)
Drill	MODERN SPECIES	65	ENSMLEG00000000088	PPP1R27 (ENSMLEG00000036063)	P4HB (ENSMLEG00000042232)	ARHGDIA (ENSMLEG00000000660)	ALYREF (ENSMLEG00000043353)	ENSMLEG00000031648	PCYT2 (ENSMLEG00000032229)	SIRT7 (ENSMLEG00000033723)	ENSMLEG00000032543	MAFG (ENSMLEG00000034575)	PYCR1 (ENSMLEG00000043085)	MYADML2 (ENSMLEG00000004302)	NOTUM (ENSMLEG00000042666)	ASPSCR1 (ENSMLEG00000036564)	ENSMLEG00000032856	RAC3 (ENSMLEG00000044154) ##22	DCXR (ENSMLEG00000040146)	RFNG (ENSMLEG00000032352)	GPS1 (ENSMLEG00000033752)	DUS1L (ENSMLEG00000035767)	FASN (ENSMLEG00000027411)	CCDC57 (ENSMLEG00000014358)	SLC16A3 (ENSMLEG00000034792)	CSNK1D (ENSMLEG00000030560)	CD7 (ENSMLEG00000029507)	SECTM1 (ENSMLEG00000033642)	OGFOD3 (ENSMLEG00000041931)	HEXD (ENSMLEG00000030772)	CYBC1 (ENSMLEG00000002853)	NARF (ENSMLEG00000035843)	ENSMLEG00000033511
Olive baboon	MODERN SPECIES	8	PPP1R27 (ENSPANG00000019316)	P4HB (ENSPANG00000019308)	ARHGDIA (ENSPANG00000019264)	ALYREF (ENSPANG00000019265)	ENSPANG00000019251	NPB (ENSPANG00000019217)	PCYT2 (ENSPANG00000019165)	SIRT7 (ENSPANG00000019167)	MAFG (ENSPANG00000019130)	PYCR1 (ENSPANG00000019032)	MYADML2 (ENSPANG00000004788)	NOTUM (ENSPANG00000019033)	ASPSCR1 (ENSPANG00000019034)	CENPX (ENSPANG00000019030)	LRRC45 (ENSPANG00000019031)	RAC3 (ENSPANG00000033412) ##22	DCXR (ENSPANG00000030600)	ENSPANG00000047105	RFNG (ENSPANG00000019005)	GPS1 (ENSPANG00000018999)	DUS1L (ENSPANG00000018945)	CCDC57 (ENSPANG00000018921)	SLC16A3 (ENSPANG00000018922)	CSNK1D (ENSPANG00000016597)	CD7 (ENSPANG00000018810)	ENSPANG00000043976	ENSPANG00000018789	OGFOD3 (ENSPANG00000018790)	HEXD (ENSPANG00000018791)	CYBC1 (ENSPANG00000018793)	NARF (ENSPANG00000018794)
Vervet Monkey	MODERN SPECIES	7	PPP1R27 (ENSCSAG00000002223)	P4HB (ENSCSAG00000002220)	ARHGDIA (ENSCSAG00000002218)	ALYREF (ENSCSAG00000002216)	ANAPC11 (ENSCSAG00000002214)	NPB (ENSCSAG00000002213)	PCYT2 (ENSCSAG00000002212)	SIRT7 (ENSCSAG00000002208)	MAFG (ENSCSAG00000002199)	PYCR1 (ENSCSAG00000002197)	MYADML2 (ENSCSAG00000019046)	NOTUM (ENSCSAG00000002196)	ASPSCR1 (ENSCSAG00000002185)	CENPX (ENSCSAG00000002172)	LRRC45 (ENSCSAG00000002170)	RAC3 (ENSCSAG00000002169) ##22	DCXR (ENSCSAG00000002167)	RFNG (ENSCSAG00000002165)	GPS1 (ENSCSAG00000002163)	DUS1L (ENSCSAG00000002157)	FASN (ENSCSAG00000002155)	CCDC57 (ENSCSAG00000002148)	SLC16A3 (ENSCSAG00000002144)	CSNK1D (ENSCSAG00000002142)	CD7 (ENSCSAG00000002137)	SECTM1 (ENSCSAG00000002122)	TEX19 (ENSCSAG00000019047)	UTS2R (ENSCSAG00000019048)	OGFOD3 (ENSCSAG00000002118)	HEXD (ENSCSAG00000002116)	CYBC1 (ENSCSAG00000002111)
Platyrrhini	ANCESTRAL SPECIES	1	ENSGT00940000159603	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615.d.a	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000157017.a.b.a	ENSGT00390000005895	ENSGT00390000014852.a	ENSGT00390000004691
Cebidae	ANCESTRAL SPECIES	25	ENSGT00940000159603	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615.d.a	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000157017.a.b.a	ENSGT00390000005895	ENSGT00390000014852.a	ENSGT00390000004691
Marmoset	MODERN SPECIES	17	P4HB (ENSCJAG00000002940)	ENSCJAG00000047620	ALYREF (ENSCJAG00000039942)	ANAPC11 (ENSCJAG00000087043)	NPB (ENSCJAG00000018299)	PCYT2 (ENSCJAG00000018279)	SIRT7 (ENSCJAG00000018273)	MAFG (ENSCJAG00000018272)	PYCR1 (ENSCJAG00000018243)	ENSCJAG00000074966	MYADML2 (ENSCJAG00000047053)	NOTUM (ENSCJAG00000018236)	ASPSCR1 (ENSCJAG00000018216)	ENSCJAG00000046033	LRRC45 (ENSCJAG00000018201)	RAC3 (ENSCJAG00000018194) ##22	DCXR (ENSCJAG00000048198)	RFNG (ENSCJAG00000018159)	GPS1 (ENSCJAG00000018123)	DUS1L (ENSCJAG00000018104)	FASN (ENSCJAG00000018059)	CCDC57 (ENSCJAG00000018041)	SLC16A3 (ENSCJAG00000018034)	CSNK1D (ENSCJAG00000017987)	ENSCJAG00000017974	TEX19 (ENSCJAG00000071247)	UTS2R (ENSCJAG00000039857)	OGFOD3 (ENSCJAG00000060460)	HEXD (ENSCJAG00000017945)	CYBC1 (ENSCJAG00000017943)	NARF (ENSCJAG00000017926)
Cebidae_a	ANCESTRAL SPECIES	17	ENSGT00940000161850	ENSGT00940000159603	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615.d.a	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000005895	ENSGT00390000014852.a	ENSGT00390000004691	ENSGT00940000153514.a.b	ENSGT00940000155709
Bolivian squirrel monkey	MODERN SPECIES	88	GCGR (ENSSBOG00000034949)	MCRIP1 (ENSSBOG00000022922)	PPP1R27 (ENSSBOG00000014736)	P4HB (ENSSBOG00000022554)	ARHGDIA (ENSSBOG00000020639)	ENSSBOG00000030924	ANAPC11 (ENSSBOG00000021940)	PCYT2 (ENSSBOG00000019320)	SIRT7 (ENSSBOG00000033138)	MAFG (ENSSBOG00000036145)	PYCR1 (ENSSBOG00000034483)	NOTUM (ENSSBOG00000030709)	ASPSCR1 (ENSSBOG00000032498)	CENPX (ENSSBOG00000029373)	LRRC45 (ENSSBOG00000030622)	RAC3 (ENSSBOG00000008502) ##22	DCXR (ENSSBOG00000017147)	RFNG (ENSSBOG00000035036)	GPS1 (ENSSBOG00000023400)	DUS1L (ENSSBOG00000021620)	FASN (ENSSBOG00000028736)	CCDC57 (ENSSBOG00000030875)	SLC16A3 (ENSSBOG00000028572)	CSNK1D (ENSSBOG00000015356)	CD7 (ENSSBOG00000022520)	ENSSBOG00000031358	OGFOD3 (ENSSBOG00000031110)	HEXD (ENSSBOG00000026642)	CYBC1 (ENSSBOG00000028740)	NARF (ENSSBOG00000035537)	FOXK2 (ENSSBOG00000026149)
Capuchin	MODERN SPECIES	36	MCRIP1 (ENSCCAG00000021803)	PPP1R27 (ENSCCAG00000029731)	P4HB (ENSCCAG00000036326)	ARHGDIA (ENSCCAG00000032208)	ENSCCAG00000020578	ANAPC11 (ENSCCAG00000032402)	NPB (ENSCCAG00000019863)	PCYT2 (ENSCCAG00000034619)	SIRT7 (ENSCCAG00000035064)	MAFG (ENSCCAG00000029928)	PYCR1 (ENSCCAG00000025166)	NOTUM (ENSCCAG00000025020)	ASPSCR1 (ENSCCAG00000026319)	CENPX (ENSCCAG00000022690)	LRRC45 (ENSCCAG00000031490)	RAC3 (ENSCCAG00000031933) ##22	DCXR (ENSCCAG00000030102)	ENSCCAG00000036572	RFNG (ENSCCAG00000031084)	GPS1 (ENSCCAG00000036476)	DUS1L (ENSCCAG00000032592)	FASN (ENSCCAG00000022806)	CCDC57 (ENSCCAG00000022119)	SLC16A3 (ENSCCAG00000027257)	CSNK1D (ENSCCAG00000023883)	ENSCCAG00000008068	CD7 (ENSCCAG00000030019)	SECTM1 (ENSCCAG00000033495)	OGFOD3 (ENSCCAG00000028711)	HEXD (ENSCCAG00000034358)	CYBC1 (ENSCCAG00000027014)
Mas night monkey	MODERN SPECIES	1059	GCGR (ENSANAG00000034898)	MCRIP1 (ENSANAG00000023764)	PPP1R27 (ENSANAG00000037087)	ENSANAG00000029411	ENSANAG00000028198	ENSANAG00000022638	ENSANAG00000026259	PCYT2 (ENSANAG00000031988)	SIRT7 (ENSANAG00000033239)	MAFG (ENSANAG00000026345)	PYCR1 (ENSANAG00000024949)	NOTUM (ENSANAG00000021623)	ENSANAG00000031931	ENSANAG00000023211	LRRC45 (ENSANAG00000021336)	RAC3 (ENSANAG00000022136) ##22	DCXR (ENSANAG00000037278)	RFNG (ENSANAG00000037889)	GPS1 (ENSANAG00000034839)	DUS1L (ENSANAG00000030037)	FASN (ENSANAG00000032055)	ENSANAG00000037918	CCDC57 (ENSANAG00000035826)	SLC16A3 (ENSANAG00000031971)	CSNK1D (ENSANAG00000020736)	ENSANAG00000020207	OGFOD3 (ENSANAG00000037221)	HEXD (ENSANAG00000028045)	CYBC1 (ENSANAG00000029825)	NARF (ENSANAG00000031359)	FOXK2 (ENSANAG00000029365)
Strepsirrhini	ANCESTRAL SPECIES	4	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148243	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000014279	ENSGT00940000156819.a.b	ENSGT00390000005895	ENSGT00390000014852.a	ENSGT00390000004691	ENSGT00940000153514.a.b
Bushbaby	MODERN SPECIES	133	MCRIP1 (ENSOGAG00000025695)	PPP1R27 (ENSOGAG00000002372)	P4HB (ENSOGAG00000002373)	ARHGDIA (ENSOGAG00000030348)	ALYREF (ENSOGAG00000012409)	ANAPC11 (ENSOGAG00000025200)	NPB (ENSOGAG00000029667)	PCYT2 (ENSOGAG00000026050)	SIRT7 (ENSOGAG00000030109)	PYCR1 (ENSOGAG00000015203)	MYADML2 (ENSOGAG00000031689)	NOTUM (ENSOGAG00000015213)	ASPSCR1 (ENSOGAG00000012451)	LRRC45 (ENSOGAG00000012458)	CENPX (ENSOGAG00000009243)	RAC3 (ENSOGAG00000012467) ##22	DCXR (ENSOGAG00000012468)	RFNG (ENSOGAG00000015248)	GPS1 (ENSOGAG00000032578)	DUS1L (ENSOGAG00000005494)	FASN (ENSOGAG00000009734)	CCDC57 (ENSOGAG00000009743)	SLC16A3 (ENSOGAG00000014865)	ENSOGAG00000014866	TEX19 (ENSOGAG00000026802)	ENSOGAG00000030593	OGFOD3 (ENSOGAG00000010942)	HEXD (ENSOGAG00000010947)	CYBC1 (ENSOGAG00000033853)	NARF (ENSOGAG00000007213)	FOXK2 (ENSOGAG00000005053)
Lemuriformes	ANCESTRAL SPECIES	2	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148243	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00940000156819.a.b	ENSGT00390000005895	ENSGT00390000014852.a	ENSGT00390000004691	ENSGT00940000153514.a.b	ENSGT00940000155709
Mouse lemur	MODERN SPECIES	7	PPP1R27 (ENSMICG00000044822)	P4HB (ENSMICG00000001144)	ARHGDIA (ENSMICG00000002895)	ALYREF (ENSMICG00000017403)	ANAPC11 (ENSMICG00000045567)	NPB (ENSMICG00000017408)	PCYT2 (ENSMICG00000017409)	SIRT7 (ENSMICG00000017412)	MAFG (ENSMICG00000037828)	PYCR1 (ENSMICG00000004071)	NOTUM (ENSMICG00000034707)	ASPSCR1 (ENSMICG00000001102)	ENSMICG00000042410	ENSMICG00000046784	LRRC45 (ENSMICG00000036749)	RAC3 (ENSMICG00000001114) ##22	DCXR (ENSMICG00000027972)	ENSMICG00000044378	RFNG (ENSMICG00000031333)	GPS1 (ENSMICG00000010127)	DUS1L (ENSMICG00000010159)	ENSMICG00000043616	CCDC57 (ENSMICG00000016752)	SLC16A3 (ENSMICG00000045790)	CSNK1D (ENSMICG00000043075)	ENSMICG00000031373	OGFOD3 (ENSMICG00000004525)	HEXD (ENSMICG00000004531)	CYBC1 (ENSMICG00000038561)	NARF (ENSMICG00000004560)	FOXK2 (ENSMICG00000004568)
Lemuriformes_a	ANCESTRAL SPECIES	18	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148243	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00940000156819.a.b	ENSGT00390000005895	ENSGT00390000014852.a	ENSGT00390000004691	ENSGT00940000153514.a.b	ENSGT00940000155709
Greater bamboo lemur	MODERN SPECIES	344	P4HB (ENSPSMG00000013354)	ARHGDIA (ENSPSMG00000013244)	ALYREF (ENSPSMG00000013213)	ANAPC11 (ENSPSMG00000013175)	NPB (ENSPSMG00000013167)	PCYT2 (ENSPSMG00000013098)	SIRT7 (ENSPSMG00000013022)	ENSPSMG00000013013	MAFG (ENSPSMG00000013011)	PYCR1 (ENSPSMG00000012854)	MYADML2 (ENSPSMG00000012748)	NOTUM (ENSPSMG00000012743)	ENSPSMG00000012728	CENPX (ENSPSMG00000012724)	LRRC45 (ENSPSMG00000012641)	RAC3 (ENSPSMG00000012588) ##22	DCXR (ENSPSMG00000012563)	ENSPSMG00000012539	RFNG (ENSPSMG00000012531)	GPS1 (ENSPSMG00000012436)	DUS1L (ENSPSMG00000012327)	ENSPSMG00000012285	CCDC57 (ENSPSMG00000012274)	SLC16A3 (ENSPSMG00000012264)	CSNK1D (ENSPSMG00000012237)	ENSPSMG00000012108
Coquerels sifaka	MODERN SPECIES	656	MCRIP1 (ENSPCOG00000021144)	PPP1R27 (ENSPCOG00000024253)	P4HB (ENSPCOG00000018728)	ARHGDIA (ENSPCOG00000001949)	ALYREF (ENSPCOG00000020874)	ANAPC11 (ENSPCOG00000028206)	NPB (ENSPCOG00000026250)	PCYT2 (ENSPCOG00000026174)	SIRT7 (ENSPCOG00000024297)	MAFG (ENSPCOG00000022466)	PYCR1 (ENSPCOG00000027617)	NOTUM (ENSPCOG00000013817)	ASPSCR1 (ENSPCOG00000024356)	CENPX (ENSPCOG00000022741)	LRRC45 (ENSPCOG00000020379)	RAC3 (ENSPCOG00000005075) ##22	DCXR (ENSPCOG00000016697)	RFNG (ENSPCOG00000027068)	GPS1 (ENSPCOG00000026035)	DUS1L (ENSPCOG00000021919)	FASN (ENSPCOG00000016667)	CCDC57 (ENSPCOG00000026740)	SLC16A3 (ENSPCOG00000025897)	CSNK1D (ENSPCOG00000010467)	OGFOD3 (ENSPCOG00000028822)	HEXD (ENSPCOG00000028828)	CYBC1 (ENSPCOG00000023512)	NARF (ENSPCOG00000015211)	FOXK2 (ENSPCOG00000028461)	WDR45B (ENSPCOG00000021365)	RAB40B (ENSPCOG00000026469)
Euarchontoglires_A	ANCESTRAL SPECIES	4	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148243	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000156819.a.b	ENSGT00390000005895	ENSGT00390000014852.a
Tree shrew	MODERN SPECIES	4581															LRRC45 (ENSTBEG00000006103)	RAC3 (ENSTBEG00000007272) ##22
Glires	ANCESTRAL SPECIES	3	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148243	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000156819.a.b	ENSGT00390000005895	ENSGT00390000014852.a
Rodentia	ANCESTRAL SPECIES	4	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00950000184814	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148243	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000156819.a.b	ENSGT00390000005895	ENSGT00390000014852.a
Rodentia_B	ANCESTRAL SPECIES	1	ENSGT00410000025615	ENSGT00950000184814	ENSGT00390000018868.B.a	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148243	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000156819.a.b	ENSGT00390000005895	ENSGT00390000014852.a
Myomorpha	ANCESTRAL SPECIES		ENSGT00410000025615	ENSGT00950000184814	ENSGT00390000018868.B.a	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148243	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000156819.a.b	ENSGT00390000005895	ENSGT00390000014852.a
Muroidea	ANCESTRAL SPECIES		ENSGT00410000025615	ENSGT00950000184814	ENSGT00390000018868.B.a	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148243	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000156819.a.b	ENSGT00390000005895	ENSGT00390000014852.a
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00950000184814	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148243	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499.j	ENSGT00530000064499.i	ENSGT00390000014279	ENSGT00940000156819.a.b	ENSGT00390000005895
Cricetidae	ANCESTRAL SPECIES		ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148243	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499.j	ENSGT00530000064499.i	ENSGT00390000014279	ENSGT01090000260051.b.a.b	ENSGT00940000157017.a.b.a
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148243	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499.j	ENSGT00530000064499.i	ENSGT00390000014279	ENSGT01090000260051.b.a.b	ENSGT00940000156819.a.b
Northern American deer mouse	MODERN SPECIES	21	Ppp1r27 (ENSPEMG00000009995)	P4hb (ENSPEMG00000006459)	Arhgdia (ENSPEMG00000029058)	ENSPEMG00000016628	Anapc11 (ENSPEMG00000026279)	Pcyt2 (ENSPEMG00000014047)	Sirt7 (ENSPEMG00000017472)	ENSPEMG00000027576	Mafg (ENSPEMG00000029910)	Pycr1 (ENSPEMG00000012558)	ENSPEMG00000024900	Notum (ENSPEMG00000010256)	Aspscr1 (ENSPEMG00000012088)	ENSPEMG00000018378	Lrrc45 (ENSPEMG00000016658)	Rac3 (ENSPEMG00000009937) ##22	Dcxr (ENSPEMG00000009098)	ENSPEMG00000017462	ENSPEMG00000015579	Rfng (ENSPEMG00000017431)	Gps1 (ENSPEMG00000017995)	Dus1l (ENSPEMG00000011610)	ENSPEMG00000024294	Ccdc57 (ENSPEMG00000014825)	Slc16a3 (ENSPEMG00000003193)	Csnk1d (ENSPEMG00000014491)	Cd7 (ENSPEMG00000007990)	Sectm1b (ENSPEMG00000016435)	Sectm1a (ENSPEMG00000010224)	ENSPEMG00000017784	ENSPEMG00000028261
Prairie vole	MODERN SPECIES	15	Ppp1r27 (ENSMOCG00000015295)	P4hb (ENSMOCG00000016072)	Arhgdia (ENSMOCG00000016860)	ENSMOCG00000016792	ENSMOCG00000016444	Npb (ENSMOCG00000019206)	Pcyt2 (ENSMOCG00000016007)	Sirt7 (ENSMOCG00000019340)	Mafg (ENSMOCG00000020602)	Pycr1 (ENSMOCG00000019166)	Myadml2 (ENSMOCG00000002991)	Notum (ENSMOCG00000022099)	Aspscr1 (ENSMOCG00000020542)	ENSMOCG00000022273	Lrrc45 (ENSMOCG00000019477)	Rac3 (ENSMOCG00000018143) ##22	Dcxr (ENSMOCG00000016163)	ENSMOCG00000018480	ENSMOCG00000022119	Rfng (ENSMOCG00000016654)	Gps1 (ENSMOCG00000017448)	Dus1l (ENSMOCG00000018377)	ENSMOCG00000018125	Ccdc57 (ENSMOCG00000019755)	Slc16a3 (ENSMOCG00000018495)	Csnk1d (ENSMOCG00000019071)	Cd7 (ENSMOCG00000020614)	ENSMOCG00000020576	ENSMOCG00000017263	ENSMOCG00000017463	ENSMOCG00000003009
Cricetinae	ANCESTRAL SPECIES		ENSGT00940000159603	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499.j	ENSGT00530000064499.i	ENSGT00390000014279	ENSGT01090000260051.b.a.b	ENSGT00940000157017.a.b.a	ENSGT00390000005895
Chinese hamster chok1gshd	MODERN SPECIES	33	Ppp1r27 (ENSCGRG00001017436)	P4hb (ENSCGRG00001013338)	Arhgdia (ENSCGRG00001012259)	ENSCGRG00001018191	Anapc11 (ENSCGRG00001015542)	Npb (ENSCGRG00001020216)	Pcyt2 (ENSCGRG00001012913)	Sirt7 (ENSCGRG00001002007)	Mafg (ENSCGRG00001012472)	Pycr1 (ENSCGRG00001023800)	Myadml2 (ENSCGRG00001012791)	Notum (ENSCGRG00001018427)	Aspscr1 (ENSCGRG00001019355)	ENSCGRG00001016087	Lrrc45 (ENSCGRG00001005546)	Rac3 (ENSCGRG00001008888) ##22	Dcxr (ENSCGRG00001017915)	ENSCGRG00001025005	ENSCGRG00001019067	Rfng (ENSCGRG00001008981)	Gps1 (ENSCGRG00001015793)	Dus1l (ENSCGRG00001021324)	Fasn (ENSCGRG00001018442)	Ccdc57 (ENSCGRG00001017086)	Slc16a3 (ENSCGRG00001022533)	Csnk1d (ENSCGRG00001020562)	Cd7 (ENSCGRG00001018861)	Sectm1b (ENSCGRG00001024244)	ENSCGRG00001011890	ENSCGRG00001013174	ENSCGRG00001005487
Golden Hamster	MODERN SPECIES	637	Ppp1r27 (ENSMAUG00000016632)	P4hb (ENSMAUG00000018291)	Arhgdia (ENSMAUG00000008500)	ENSMAUG00000020552	ENSMAUG00000019133	ENSMAUG00000011011	Pcyt2 (ENSMAUG00000010875)	Sirt7 (ENSMAUG00000018180)	Mafg (ENSMAUG00000001866)	Pycr1 (ENSMAUG00000000981)	Myadml2 (ENSMAUG00000010009)	Notum (ENSMAUG00000016212)	Aspscr1 (ENSMAUG00000015340)	ENSMAUG00000008165	Lrrc45 (ENSMAUG00000001954)	Rac3 (ENSMAUG00000000969) ##22	Dcxr (ENSMAUG00000010205)	Rfng (ENSMAUG00000021621)	Gps1 (ENSMAUG00000015833)	Dus1l (ENSMAUG00000015152)	Ccdc57 (ENSMAUG00000011033)	Slc16a3 (ENSMAUG00000020959)	Csnk1d (ENSMAUG00000010890)	Cd7 (ENSMAUG00000010805)	ENSMAUG00000021160	ENSMAUG00000000972	ENSMAUG00000001776	ENSMAUG00000010377	Ogfod3 (ENSMAUG00000012101)	Hexdc (ENSMAUG00000017479)	Cybc1 (ENSMAUG00000001824)
Murinae	ANCESTRAL SPECIES	6	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00950000184814	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499.j	ENSGT00530000064499.i	ENSGT00390000014279.e	ENSGT00390000014279.f	ENSGT00940000156819.a.b
Mus	ANCESTRAL SPECIES	2	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00950000184814	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499.j	ENSGT00530000064499.i	ENSGT00390000014279.e	ENSGT00390000014279.f	ENSGT00940000156819.a.b
Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615.h.a	ENSGT00950000184814	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00960000191026	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499.j	ENSGT00530000064499.i	ENSGT00390000014279.e	ENSGT00390000014279.f	ENSGT00940000156819.a.b
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615.h.a	ENSGT00950000184814	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00960000191026	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499.j	ENSGT00530000064499.i	ENSGT00390000014279.e	ENSGT00390000014279.f	ENSGT00940000156819.a.b
Mouse	MODERN SPECIES	2	Ppp1r27 (ENSMUSG00000025129)	P4hb (ENSMUSG00000025130)	Arhgdia (ENSMUSG00000025132)	Alyref (ENSMUSG00000025134)	Anapc11 (ENSMUSG00000025135)	Npb (ENSMUSG00000044034)	Pcyt2 (ENSMUSG00000025137)	Sirt7 (ENSMUSG00000025138)	Mafg (ENSMUSG00000051510)	Pycr1 (ENSMUSG00000025140)	Myadml2 (ENSMUSG00000025141)	Notum (ENSMUSG00000042988)	Aspscr1 (ENSMUSG00000025142)	Cenpx (ENSMUSG00000025144)	Lrrc45 (ENSMUSG00000025145)	Rac3 (ENSMUSG00000018012) ##22	Dcxr (ENSMUSG00000039450)	Cbr2 (ENSMUSG00000025150)	Hmga1b (ENSMUSG00000078249)	Rfng (ENSMUSG00000025158)	Gps1 (ENSMUSG00000025156)	Dus1l (ENSMUSG00000025155)	Fasn (ENSMUSG00000025153)	Ccdc57 (ENSMUSG00000048445)	Slc16a3 (ENSMUSG00000025161)	Csnk1d (ENSMUSG00000025162)	Cd7 (ENSMUSG00000025163)	Sectm1b (ENSMUSG00000039364)	Sectm1a (ENSMUSG00000025165)	Tex19.2 (ENSMUSG00000039337)	Tex19.1 (ENSMUSG00000039329)
Mus_C	ANCESTRAL SPECIES	21	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615.h.a	ENSGT00950000184814	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00960000191026	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499.j	ENSGT00530000064499.i	ENSGT00390000014279.e	ENSGT00390000014279.f	ENSGT00940000156819.a.b
spretus	MODERN SPECIES	2	Ppp1r27 (MGP_SPRETEiJ_G0018370)	P4hb (MGP_SPRETEiJ_G0018371)	Arhgdia (MGP_SPRETEiJ_G0018372)	Alyref (MGP_SPRETEiJ_G0018373)	Anapc11 (MGP_SPRETEiJ_G0018374)	Npb (MGP_SPRETEiJ_G0018375)	Pcyt2 (MGP_SPRETEiJ_G0018376)	Sirt7 (MGP_SPRETEiJ_G0018377)	Mafg (MGP_SPRETEiJ_G0018378)	Pycr1 (MGP_SPRETEiJ_G0018379)	MGP_SPRETEiJ_G0018380	Notum (MGP_SPRETEiJ_G0018381)	Aspscr1 (MGP_SPRETEiJ_G0018382)	Cenpx (MGP_SPRETEiJ_G0018383)	Lrrc45 (MGP_SPRETEiJ_G0018384)	Rac3 (MGP_SPRETEiJ_G0018385) ##22	Dcxr (MGP_SPRETEiJ_G0018386)	Cbr2 (MGP_SPRETEiJ_G0018387)	Rfng (MGP_SPRETEiJ_G0018388)	Gps1 (MGP_SPRETEiJ_G0018389)	Dus1l (MGP_SPRETEiJ_G0018390)	Fasn (MGP_SPRETEiJ_G0018391)	Ccdc57 (MGP_SPRETEiJ_G0018392)	Slc16a3 (MGP_SPRETEiJ_G0018393)	Csnk1d (MGP_SPRETEiJ_G0018394)	Cd7 (MGP_SPRETEiJ_G0018395)	Sectm1b (MGP_SPRETEiJ_G0018396)	Sectm1a (MGP_SPRETEiJ_G0018397)	Tex19.2 (MGP_SPRETEiJ_G0018398)	Tex19.1 (MGP_SPRETEiJ_G0018399)	Uts2r (MGP_SPRETEiJ_G0018400)
Steppe mouse	MODERN SPECIES	2107			Alyref (ENSMSIG00000000268)	ENSMSIG00000000239	Anapc11 (ENSMSIG00000000208)	Npb (ENSMSIG00000000194)	Pcyt2 (ENSMSIG00000000074)	Sirt7 (ENSMSIG00000000028)	ENSMSIG00000000010	Pycr1 (ENSMSIG00000025542)	ENSMSIG00000025513	Notum (ENSMSIG00000025485)	Aspscr1 (ENSMSIG00000025360)	Cenpx (ENSMSIG00000025317)	Lrrc45 (ENSMSIG00000025285)	Rac3 (ENSMSIG00000025271) ##22	Dcxr (ENSMSIG00000025231)	Cbr2 (ENSMSIG00000025210)	Rfng (ENSMSIG00000025189)	Gps1 (ENSMSIG00000025130)	Dus1l (ENSMSIG00000025019)	Fasn (ENSMSIG00000024874)
Ryukyu mouse	MODERN SPECIES	2	Ppp1r27 (MGP_CAROLIEiJ_G0017526)	P4hb (MGP_CAROLIEiJ_G0017527)	Arhgdia (MGP_CAROLIEiJ_G0017528)	Alyref (MGP_CAROLIEiJ_G0017529)	Anapc11 (MGP_CAROLIEiJ_G0017530)	Npb (MGP_CAROLIEiJ_G0017531)	MGP_CAROLIEiJ_G0017532	Sirt7 (MGP_CAROLIEiJ_G0017533)	Mafg (MGP_CAROLIEiJ_G0017534)	Pycr1 (MGP_CAROLIEiJ_G0017535)	MGP_CAROLIEiJ_G0017536	Notum (MGP_CAROLIEiJ_G0017537)	Aspscr1 (MGP_CAROLIEiJ_G0017538)	Cenpx (MGP_CAROLIEiJ_G0017539)	Lrrc45 (MGP_CAROLIEiJ_G0017540)	Rac3 (MGP_CAROLIEiJ_G0017541) ##22	Dcxr (MGP_CAROLIEiJ_G0017542)	Cbr2 (MGP_CAROLIEiJ_G0017543)	Rfng (MGP_CAROLIEiJ_G0017544)	Gps1 (MGP_CAROLIEiJ_G0017545)	Dus1l (MGP_CAROLIEiJ_G0017546)	Fasn (MGP_CAROLIEiJ_G0017547)	Ccdc57 (MGP_CAROLIEiJ_G0017548)	Slc16a3 (MGP_CAROLIEiJ_G0017549)	Csnk1d (MGP_CAROLIEiJ_G0017550)	Cd7 (MGP_CAROLIEiJ_G0017551)	Sectm1b (MGP_CAROLIEiJ_G0017552)	Sectm1a (MGP_CAROLIEiJ_G0017553)	Tex19.2 (MGP_CAROLIEiJ_G0017554)	MGP_CAROLIEiJ_G0017555	Uts2r (MGP_CAROLIEiJ_G0017556)
Shrew mouse	MODERN SPECIES	5	P4hb (MGP_PahariEiJ_G0018653)	Arhgdia (MGP_PahariEiJ_G0018654)	MGP_PahariEiJ_G0018655	MGP_PahariEiJ_G0018656	Anapc11 (MGP_PahariEiJ_G0018657)	Npb (MGP_PahariEiJ_G0018658)	Pcyt2 (MGP_PahariEiJ_G0018659)	Sirt7 (MGP_PahariEiJ_G0018660)	Mafg (MGP_PahariEiJ_G0018661)	Pycr1 (MGP_PahariEiJ_G0018662)	MGP_PahariEiJ_G0018663	Notum (MGP_PahariEiJ_G0018664)	Aspscr1 (MGP_PahariEiJ_G0018665)	MGP_PahariEiJ_G0018666	Lrrc45 (MGP_PahariEiJ_G0018667)	Rac3 (MGP_PahariEiJ_G0018668) ##22	Dcxr (MGP_PahariEiJ_G0018669)	Cbr2 (MGP_PahariEiJ_G0018670)	Rfng (MGP_PahariEiJ_G0018671)	Gps1 (MGP_PahariEiJ_G0018672)	Dus1l (MGP_PahariEiJ_G0018673)	Fasn (MGP_PahariEiJ_G0018674)	Ccdc57 (MGP_PahariEiJ_G0018675)	Slc16a3 (MGP_PahariEiJ_G0018676)	Csnk1d (MGP_PahariEiJ_G0018677)	MGP_PahariEiJ_G0018678	MGP_PahariEiJ_G0018679	MGP_PahariEiJ_G0018680	Tex19.2 (MGP_PahariEiJ_G0018681)	MGP_PahariEiJ_G0018682	Uts2r (MGP_PahariEiJ_G0018683)
Rat	MODERN SPECIES	1	Mcrip1 (ENSRNOG00000036691)	Ppp1r27 (ENSRNOG00000036690)	P4hb (ENSRNOG00000036689)	Arhgdia (ENSRNOG00000036688)	Alyref (ENSRNOG00000036687)	Npb (ENSRNOG00000036686)	Pcyt2 (ENSRNOG00000036684)	Sirt7 (ENSRNOG00000036683)	Mafg (ENSRNOG00000036697)	Pycr1 (ENSRNOG00000036682)	Myadml2 (ENSRNOG00000036681)	Notum (ENSRNOG00000036680)	Aspscr1 (ENSRNOG00000036678)	Cbr2 (ENSRNOG00000069492)	Lrrc45 (ENSRNOG00000045926)	Rac3 (ENSRNOG00000069600) ##22	LOC688321 (ENSRNOG00000067169)	Rfng (ENSRNOG00000050298)	Gps1 (ENSRNOG00000046698)	Dus1l (ENSRNOG00000047905)	Fasn (ENSRNOG00000045636)	Ccdc57 (ENSRNOG00000047531)	Slc16a3 (ENSRNOG00000036677)	Csnk1d (ENSRNOG00000036676)	Cd7 (ENSRNOG00000036674)	Sectm1b (ENSRNOG00000036673)	Sectm1a (ENSRNOG00000036672)	Tex19.2 (ENSRNOG00000036671)	Tex19.1 (ENSRNOG00000036670)	Uts2r (ENSRNOG00000036669)	Ogfod3 (ENSRNOG00000036668)
Upper Galilee mountains blind mole rat	MODERN SPECIES	392	Ppp1r27 (ENSNGAG00000024333)	ENSNGAG00000022248	Arhgdia (ENSNGAG00000001460)	ENSNGAG00000022014	Anapc11 (ENSNGAG00000006910)	Npb (ENSNGAG00000021991)	Pcyt2 (ENSNGAG00000024272)	Sirt7 (ENSNGAG00000021943)	Mafg (ENSNGAG00000007487)	Pycr1 (ENSNGAG00000013973)	Myadml2 (ENSNGAG00000011652)	Notum (ENSNGAG00000010728)	Aspscr1 (ENSNGAG00000011937)	ENSNGAG00000000855	Lrrc45 (ENSNGAG00000014866)	Rac3 (ENSNGAG00000024158) ##22	Dcxr (ENSNGAG00000022267)	Cbr2 (ENSNGAG00000017888)	Rfng (ENSNGAG00000001205)	Dus1l (ENSNGAG00000018676)	ENSNGAG00000010008	Ccdc57 (ENSNGAG00000023349)	Slc16a3 (ENSNGAG00000017193)	Csnk1d (ENSNGAG00000023341)	Cd7 (ENSNGAG00000021227)
Lesser Egyptian jerboa	MODERN SPECIES	56	Ppp1r27 (ENSJJAG00000018812)	P4hb (ENSJJAG00000013521)	Arhgdia (ENSJJAG00000014353)	ENSJJAG00000004134	Anapc11 (ENSJJAG00000012099)	Npb (ENSJJAG00000011500)	Pcyt2 (ENSJJAG00000012939)	Sirt7 (ENSJJAG00000017749)	Mafg (ENSJJAG00000009755)	Pycr1 (ENSJJAG00000009901)	Myadml2 (ENSJJAG00000005042)	Notum (ENSJJAG00000003259)	Aspscr1 (ENSJJAG00000019747)	ENSJJAG00000005559	Lrrc45 (ENSJJAG00000003995)	Rac3 (ENSJJAG00000012538) ##22	Dcxr (ENSJJAG00000002613)	Rfng (ENSJJAG00000000833)	Gps1 (ENSJJAG00000004449)	Dus1l (ENSJJAG00000020218)	ENSJJAG00000004660	Ccdc57 (ENSJJAG00000013883)	Slc16a3 (ENSJJAG00000023943)	Csnk1d (ENSJJAG00000010695)	Cd7 (ENSJJAG00000005002)	ENSJJAG00000011841	ENSJJAG00000005303	Ogfod3 (ENSJJAG00000001492)	Hexdc (ENSJJAG00000014994)	ENSJJAG00000011450	Narf (ENSJJAG00000023902)
Kangaroo rat	MODERN SPECIES	482	Mcrip1 (ENSDORG00000026667)	Ppp1r27 (ENSDORG00000011794)	P4hb (ENSDORG00000011795)	Arhgdia (ENSDORG00000028839)	ENSDORG00000025849	Anapc11 (ENSDORG00000024235)	Pcyt2 (ENSDORG00000000291)	ENSDORG00000000295	Mafg (ENSDORG00000025339)	Pycr1 (ENSDORG00000000301)	Myadml2 (ENSDORG00000000306)	Notum (ENSDORG00000000307)	ENSDORG00000026135	ENSDORG00000024180	Lrrc45 (ENSDORG00000013520)	Rac3 (ENSDORG00000013521) ##22	Dcxr (ENSDORG00000013523)	Cbr2 (ENSDORG00000023476)	Gps1 (ENSDORG00000003331)	Dus1l (ENSDORG00000028758)	ENSDORG00000004306	Ccdc57 (ENSDORG00000010776)	Slc16a3 (ENSDORG00000009977)	Csnk1d (ENSDORG00000011036)	ENSDORG00000025295	ENSDORG00000025751	ENSDORG00000009383	Ogfod3 (ENSDORG00000014856)	Hexdc (ENSDORG00000004909)	Cybc1 (ENSDORG00000024907)	Narf (ENSDORG00000012779)
Rodentia_A	ANCESTRAL SPECIES	3	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00950000184814	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148243	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000156819.a.b	ENSGT00390000005895	ENSGT00390000014852.a
Sciuridae	ANCESTRAL SPECIES	4	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00950000184814	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148243	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853.d	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000156819.a.b	ENSGT00390000005895	ENSGT00390000014852.a
Marmotini	ANCESTRAL SPECIES	36	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00950000184814	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148243	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853.d	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000156819.a.b	ENSGT00390000005895	ENSGT00390000014852.a
Marmotini_b	ANCESTRAL SPECIES	20	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00950000184814	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00910000148243	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853.d	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT00940000156819.a.b	ENSGT00390000014279	ENSGT00390000005895	ENSGT00390000014852.a
Arctic ground squirrel	MODERN SPECIES	470	ARHGDIA (ENSUPAG00010000396)	ALYREF (ENSUPAG00010000402)	ENSUPAG00010000411	ANAPC11 (ENSUPAG00010000424)	PCYT2 (ENSUPAG00010000437)	NPB (ENSUPAG00010000504)	SIRT7 (ENSUPAG00010000513)	MAFG (ENSUPAG00010000525)	ENSUPAG00010000535	PYCR1 (ENSUPAG00010000543)	MYADML2 (ENSUPAG00010000551)	NOTUM (ENSUPAG00010000559)	ASPSCR1 (ENSUPAG00010000586)	CENPX (ENSUPAG00010000729)	LRRC45 (ENSUPAG00010000745)	RAC3 (ENSUPAG00010000772) ##22	DCXR (ENSUPAG00010000786)	ENSUPAG00010000808	RFNG (ENSUPAG00010000829)	GPS1 (ENSUPAG00010000859)	DUS1L (ENSUPAG00010000944)	CCDC57 (ENSUPAG00010002989)	SLC16A3 (ENSUPAG00010003006)	CSNK1D (ENSUPAG00010003017)	ENSUPAG00010003040	ENSUPAG00010003085
Squirrel	MODERN SPECIES	194	PPP1R27 (ENSSTOG00000028022)	P4HB (ENSSTOG00000026026)	ARHGDIA (ENSSTOG00000015756)	ENSSTOG00000016570	ANAPC11 (ENSSTOG00000027337)	NPB (ENSSTOG00000025278)	PCYT2 (ENSSTOG00000006219)	SIRT7 (ENSSTOG00000006241)	MAFG (ENSSTOG00000024966)	PYCR1 (ENSSTOG00000014080)	ENSSTOG00000006267	NOTUM (ENSSTOG00000006274)	ASPSCR1 (ENSSTOG00000006300)	CENPX (ENSSTOG00000030309)	LRRC45 (ENSSTOG00000007315)	RAC3 (ENSSTOG00000014015) ##22	DCXR (ENSSTOG00000028714)	ENSSTOG00000025383	GPS1 (ENSSTOG00000003755)	DUS1L (ENSSTOG00000003787)	FASN (ENSSTOG00000010276)	CCDC57 (ENSSTOG00000007517)	SLC16A3 (ENSSTOG00000021371)	CSNK1D (ENSSTOG00000001725)	ENSSTOG00000023867	ENSSTOG00000021446
Alpin marmot	MODERN SPECIES	90	MCRIP1 (ENSMMMG00000005529)	P4HB (ENSMMMG00000005494)	ARHGDIA (ENSMMMG00000005480)	ANAPC11 (ENSMMMG00000005453)	PCYT2 (ENSMMMG00000005412)	ENSMMMG00000005400	ENSMMMG00000005394	ENSMMMG00000005384	MAFG (ENSMMMG00000005373)	PYCR1 (ENSMMMG00000005348)	MYADML2 (ENSMMMG00000005339)	NOTUM (ENSMMMG00000005284)	ASPSCR1 (ENSMMMG00000005107)	CENPX (ENSMMMG00000005068)	LRRC45 (ENSMMMG00000005027)	RAC3 (ENSMMMG00000004991) ##22	DCXR (ENSMMMG00000004960)	RFNG (ENSMMMG00000004952)	GPS1 (ENSMMMG00000004927)	DUS1L (ENSMMMG00000004831)	ENSMMMG00000003219	CSNK1D (ENSMMMG00000003195)	ENSMMMG00000003188	ENSMMMG00000003176	ENSMMMG00000003173	ENSMMMG00000003162	OGFOD3 (ENSMMMG00000003157)	HEXD (ENSMMMG00000003143)	CYBC1 (ENSMMMG00000003130)	NARF (ENSMMMG00000003094)	FOXK2 (ENSMMMG00000003086)
Eurasian red squirrel	MODERN SPECIES	12	ALYREF (ENSSVLG00005018278)	ENSSVLG00005018234	ANAPC11 (ENSSVLG00005018201)	NPB (ENSSVLG00005018182)	PCYT2 (ENSSVLG00005017544)	SIRT7 (ENSSVLG00005017343)	MAFG (ENSSVLG00005017296)	PYCR1 (ENSSVLG00005017184)	MYADML2 (ENSSVLG00005017144)	NOTUM (ENSSVLG00005016990)	ENSSVLG00005016958	ENSSVLG00005016920	ENSSVLG00005016908	CENPX (ENSSVLG00005016768)	LRRC45 (ENSSVLG00005016731)	RAC3 (ENSSVLG00005016691) ##22	DCXR (ENSSVLG00005016612)	RFNG (ENSSVLG00005016551)	DUS1L (ENSSVLG00005016028)	CCDC57 (ENSSVLG00005015874)	SLC16A3 (ENSSVLG00005015807)	CSNK1D (ENSSVLG00005015703)	ENSSVLG00005015524	ENSSVLG00005015478	ENSSVLG00005015429	ENSSVLG00005015399	ENSSVLG00005015380	ENSSVLG00005015359	OGFOD3 (ENSSVLG00005015237)	HEXD (ENSSVLG00005015204)	CYBC1 (ENSSVLG00005015097)
Hystricomorpha	ANCESTRAL SPECIES	24	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00980000200442	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00390000005895	ENSGT00390000014852.a	ENSGT00390000004691
Hystricomorpha_a	ANCESTRAL SPECIES	19	ENSGT00940000159603	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT01030000234534.C	ENSGT00390000005895	ENSGT00390000014852.a	ENSGT00390000004691
Hystricomorpha_b	ANCESTRAL SPECIES	12	ENSGT00940000159603	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT00940000156819.a.b	ENSGT00390000005895	ENSGT00390000014852.a	ENSGT00390000004691	ENSGT00940000153514.a.b
Degu	MODERN SPECIES	153	MCRIP1 (ENSODEG00000007940)	PPP1R27 (ENSODEG00000010740)	P4HB (ENSODEG00000009563)	ENSODEG00000009046	ALYREF (ENSODEG00000008359)	ANAPC11 (ENSODEG00000007931)	PCYT2 (ENSODEG00000008954)	SIRT7 (ENSODEG00000008260)	MAFG (ENSODEG00000008381)	ENSODEG00000008271	ENSODEG00000009159	NOTUM (ENSODEG00000008781)	ASPSCR1 (ENSODEG00000009351)	CENPX (ENSODEG00000011229)	LRRC45 (ENSODEG00000007475)	RAC3 (ENSODEG00000007852) ##22	DCXR (ENSODEG00000009244)	RFNG (ENSODEG00000007530)	ENSODEG00000008620	DUS1L (ENSODEG00000007777)	ENSODEG00000019449	ENSODEG00000019447	CCDC57 (ENSODEG00000008365)	ENSODEG00000008173	ENSODEG00000007855	ENSODEG00000007569	ENSODEG00000019459	ENSODEG00000007186	OGFOD3 (ENSODEG00000007453)	HEXD (ENSODEG00000009299)	CYBC1 (ENSODEG00000008201)
Long-tailed chinchilla	MODERN SPECIES	213	MCRIP1 (ENSCLAG00000007829)	PPP1R27 (ENSCLAG00000007730)	P4HB (ENSCLAG00000007202)	ARHGDIA (ENSCLAG00000006205)	ALYREF (ENSCLAG00000015026)	NPB (ENSCLAG00000012664)	PCYT2 (ENSCLAG00000006792)	SIRT7 (ENSCLAG00000004980)	MAFG (ENSCLAG00000007854)	PYCR1 (ENSCLAG00000007608)	ENSCLAG00000006916	NOTUM (ENSCLAG00000006719)	ASPSCR1 (ENSCLAG00000004696)	CENPX (ENSCLAG00000004656)	LRRC45 (ENSCLAG00000004763)	RAC3 (ENSCLAG00000010501) ##22	DCXR (ENSCLAG00000008146)	RFNG (ENSCLAG00000009349)	GPS1 (ENSCLAG00000012143)	DUS1L (ENSCLAG00000014832)	FASN (ENSCLAG00000005591)	CCDC57 (ENSCLAG00000005551)	SLC16A3 (ENSCLAG00000004858)	CSNK1D (ENSCLAG00000009366)	ENSCLAG00000011900	ENSCLAG00000011256	ENSCLAG00000006055	OGFOD3 (ENSCLAG00000004475)	HEXD (ENSCLAG00000008098)	CYBC1 (ENSCLAG00000005191)	NARF (ENSCLAG00000004659)
Guinea pig	MODERN SPECIES	76	MCRIP1 (ENSCPOG00000040444)	PPP1R27 (ENSCPOG00000015239)	P4HB (ENSCPOG00000012247)	ARHGDIA (ENSCPOG00000039804)	ALYREF (ENSCPOG00000013710)	ANAPC11 (ENSCPOG00000013713)	PCYT2 (ENSCPOG00000001826)	SIRT7 (ENSCPOG00000001834)	MAFG (ENSCPOG00000039459)	PYCR1 (ENSCPOG00000002045)	MYADML2 (ENSCPOG00000002048)	NOTUM (ENSCPOG00000012400)	ASPSCR1 (ENSCPOG00000014896)	CENPX (ENSCPOG00000035990)	LRRC45 (ENSCPOG00000013857)	RAC3 (ENSCPOG00000013861) ##22	Dcxr (ENSCPOG00000026566)	ENSCPOG00000031500	RFNG (ENSCPOG00000021305)	GPS1 (ENSCPOG00000001868)	DUS1L (ENSCPOG00000030880)	ENSCPOG00000025609	FASN (ENSCPOG00000002297)	CCDC57 (ENSCPOG00000010590)	SLC16A3 (ENSCPOG00000025481)	CSNK1D (ENSCPOG00000010919)	ENSCPOG00000002971	ENSCPOG00000039282	ENSCPOG00000006828	OGFOD3 (ENSCPOG00000022303)	HEXD (ENSCPOG00000003869)
Naked mole-rat female	MODERN SPECIES	12	ENSHGLG00000005222	PPP1R27 (ENSHGLG00000005910)	P4HB (ENSHGLG00000006261)	ARHGDIA (ENSHGLG00000046286)	ALYREF (ENSHGLG00000008293)	ENSHGLG00000037408	NPB (ENSHGLG00000040297)	PCYT2 (ENSHGLG00000004533)	SIRT7 (ENSHGLG00000005752)	MAFG (ENSHGLG00000006417)	PYCR1 (ENSHGLG00000007472)	NOTUM (ENSHGLG00000048049)	ASPSCR1 (ENSHGLG00000005080)	ENSHGLG00000005308	LRRC45 (ENSHGLG00000006712)	RAC3 (ENSHGLG00000009062) ##22	DCXR (ENSHGLG00000010061)	ENSHGLG00000005948	ENSHGLG00000007367	ENSHGLG00000045845	DUS1L (ENSHGLG00000010316)	FASN (ENSHGLG00000004716)	CCDC57 (ENSHGLG00000008017)	SLC16A3 (ENSHGLG00000009036)	CSNK1D (ENSHGLG00000004854)	ENSHGLG00000021189	ENSHGLG00000045188	ENSHGLG00000050571	ENSHGLG00000047511	ENSHGLG00000050461	OGFOD3 (ENSHGLG00000006783)
Laurasiatheria	ANCESTRAL SPECIES	4	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00950000184814	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148243	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00910000147748	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000156819.a.b	ENSGT00940000157017.a.b.a
Laurasiatheria_a	ANCESTRAL SPECIES	4	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00950000184814	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148243	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00910000147748	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000157017.a.b.a	ENSGT00390000005895
Laurasiatheria_b	ANCESTRAL SPECIES	4	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00950000184814	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148243	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00910000147748	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000157017.a.b.a	ENSGT00390000005895
Carnivora	ANCESTRAL SPECIES	9	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00950000184814	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148243	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00910000147748	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000156819.a.b	ENSGT00390000005895
Caniformia	ANCESTRAL SPECIES	6	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00950000184814	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148243	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00910000147748	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000156819.a.b	ENSGT00390000005895
Caniformia_b	ANCESTRAL SPECIES	20	ENSGT00940000159603	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000156819.a.b	ENSGT00390000005895	ENSGT00390000014852.a
Ursidae	ANCESTRAL SPECIES	19	ENSGT00940000159603	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000172941	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000156819.a.b	ENSGT00390000005895	ENSGT00390000014852.a
Giant Panda	MODERN SPECIES	4	GCGR (ENSAMEG00000017496)	MCRIP1 (ENSAMEG00000017494)	PPP1R27 (ENSAMEG00000017493)	P4HB (ENSAMEG00000017476)	ENSAMEG00000017468	ALYREF (ENSAMEG00000017463)	ANAPC11 (ENSAMEG00000017462)	PCYT2 (ENSAMEG00000017430)	MAFG (ENSAMEG00000026568)	PYCR1 (ENSAMEG00000026292)	MYADML2 (ENSAMEG00000018834)	NOTUM (ENSAMEG00000017398)	ASPSCR1 (ENSAMEG00000017387)	CENPX (ENSAMEG00000017384)	LRRC45 (ENSAMEG00000017370)	RAC3 (ENSAMEG00000017364) ##22	DCXR (ENSAMEG00000030455)	ENSAMEG00000017356	RFNG (ENSAMEG00000017344)	GPS1 (ENSAMEG00000017330)	DUS1L (ENSAMEG00000017313)	FASN (ENSAMEG00000017256)	CCDC57 (ENSAMEG00000017245)	SLC16A3 (ENSAMEG00000017233)	ENSAMEG00000017220	ENSAMEG00000031249	ENSAMEG00000002048	NPBWR2 (ENSAMEG00000002036)	OPRL1 (ENSAMEG00000029864)	LKAAEAR1 (ENSAMEG00000026225)	RGS19 (ENSAMEG00000002006)
Ursus	ANCESTRAL SPECIES	2	ENSGT00940000159603	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000172941	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00970000195292	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000156819.a.b	ENSGT00390000005895	ENSGT00390000014852.a	ENSGT00390000004691
American black bear	MODERN SPECIES	3314											MYADML2 (ENSUAMG00000024522)	NOTUM (ENSUAMG00000024523)	ASPSCR1 (ENSUAMG00000024524)	ENSUAMG00000024526	LRRC45 (ENSUAMG00000024528)	RAC3 (ENSUAMG00000024529) ##22	ENSUAMG00000024530
Mustelinae	ANCESTRAL SPECIES	1	ENSGT00940000159603	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT01090000260051.b.a.b	ENSGT00390000005895	ENSGT00390000014852.a	ENSGT00390000004691
Ferret	MODERN SPECIES	186	NPLOC4 (ENSMPUG00000011483)	TSPAN10 (ENSMPUG00000011476)	PDE6G (ENSMPUG00000011466)	OXLD1 (ENSMPUG00000011461)	CCDC137 (ENSMPUG00000011449)	HGS (ENSMPUG00000011441)	ENSMPUG00000011438	SLC25A10 (ENSMPUG00000011432)	ENSMPUG00000011424	GCGR (ENSMPUG00000011352)	ANAPC11 (ENSMPUG00000011339)	PCYT2 (ENSMPUG00000011252)	NOTUM (ENSMPUG00000011245)	ASPSCR1 (ENSMPUG00000011239)	LRRC45 (ENSMPUG00000011227)	RAC3 (ENSMPUG00000011187) ##22	GPS1 (ENSMPUG00000011181)	FASN (ENSMPUG00000011170)	ENSMPUG00000011162	SLC16A3 (ENSMPUG00000011135)	CSNK1D (ENSMPUG00000011133)	ENSMPUG00000011118	ENSMPUG00000011111	ENSMPUG00000019900	ENSMPUG00000019898	OGFOD3 (ENSMPUG00000011059)	HEXD (ENSMPUG00000011053)	CYBC1 (ENSMPUG00000011020)	NARF (ENSMPUG00000010937)	ENSMPUG00000010920	WDR45B (ENSMPUG00000010915)
American mink	MODERN SPECIES	27	P4HB (ENSNVIG00000016345)	ARHGDIA (ENSNVIG00000016417)	ALYREF (ENSNVIG00000016443)	APC11 (ENSNVIG00000016465)	NPB (ENSNVIG00000016522)	PCYT2 (ENSNVIG00000016542)	SIRT7 (ENSNVIG00000016664)	MAFG (ENSNVIG00000016674)	ENSNVIG00000016688	PYCR1 (ENSNVIG00000016699)	MYADML2 (ENSNVIG00000016756)	NOTUM (ENSNVIG00000016763)	ASPSCR1 (ENSNVIG00000016783)	ENSNVIG00000016794	LRRC45 (ENSNVIG00000016804)	RAC3 (ENSNVIG00000016856) ##22	DCXR (ENSNVIG00000016871)	RFNG (ENSNVIG00000016900)	GPS1 (ENSNVIG00000016922)	DUS1L (ENSNVIG00000016975)	FASN (ENSNVIG00000016998)	CCDC57 (ENSNVIG00000017055)	SLC16A3 (ENSNVIG00000017105)	CSNK1D (ENSNVIG00000017157)	ENSNVIG00000017338	ENSNVIG00000017377	TEX19 (ENSNVIG00000017384)
Canidae	ANCESTRAL SPECIES	28	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00950000184814	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148243	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00910000147748	ENSGT00390000013965	ENSGT00530000064499	ENSGT00940000156819.a.b	ENSGT00390000005895	ENSGT00390000014852.a
Canis_lupus	ANCESTRAL SPECIES	34	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00950000184814	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148243	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00910000147748	ENSGT00390000013965	ENSGT00530000064499	ENSGT01090000260051.b.a.b	ENSGT00940000156819.a.b	ENSGT00390000005895
Dog	MODERN SPECIES	37	ARHGDIA (ENSCAFG00845009197)	ALYREF (ENSCAFG00845009137)	ENSCAFG00845009110	ANAPC11 (ENSCAFG00845009082)	NPB (ENSCAFG00845009053)	PCYT2 (ENSCAFG00845008933)	SIRT7 (ENSCAFG00845008831)	ENSCAFG00845008779	MAFG (ENSCAFG00845008746)	PYCR1 (ENSCAFG00845008603)	MYADML2 (ENSCAFG00845008558)	NOTUM (ENSCAFG00845008511)	ASPSCR1 (ENSCAFG00845008394)	CENPX (ENSCAFG00845008301)	LRRC45 (ENSCAFG00845008238)	RAC3 (ENSCAFG00845008197) ##22	DCXR (ENSCAFG00845008136)	ENSCAFG00845008077	RFNG (ENSCAFG00845008009)	GPS1 (ENSCAFG00845007897)	DUS1L (ENSCAFG00845007773)	FASN (ENSCAFG00845007524)	ENSCAFG00845007310	SLC16A3 (ENSCAFG00845007246)	CSNK1D (ENSCAFG00845007139)	CD7 (ENSCAFG00845007073)	ENSCAFG00845007033	ENSCAFG00845007001	OGFOD3 (ENSCAFG00845006903)	HEXD (ENSCAFG00845006748)	CYBC1 (ENSCAFG00845006638)
Dingo	MODERN SPECIES	68	ARHGDIA (ENSCAFG00020009793)	ALYREF (ENSCAFG00020009815)	ENSCAFG00020009872	ANAPC11 (ENSCAFG00020009874)	NPB (ENSCAFG00020009877)	PCYT2 (ENSCAFG00020009886)	SIRT7 (ENSCAFG00020009936)	MAFG (ENSCAFG00020009952)	ENSCAFG00020009954	PYCR1 (ENSCAFG00020009965)	MYADML2 (ENSCAFG00020010095)	NOTUM (ENSCAFG00020010105)	ASPSCR1 (ENSCAFG00020010181)	ENSCAFG00020010190	LRRC45 (ENSCAFG00020010194)	RAC3 (ENSCAFG00020010205) ##22	DCXR (ENSCAFG00020010210)	ENSCAFG00020010216	RFNG (ENSCAFG00020010223)	GPS1 (ENSCAFG00020010241)	DUS1L (ENSCAFG00020010251)	FASN (ENSCAFG00020010328)	CCDC57 (ENSCAFG00020013631)	SLC16A3 (ENSCAFG00020013638)	CSNK1D (ENSCAFG00020013643)	ENSCAFG00020013652	ENSCAFG00020013655	ENSCAFG00020013657	ENSCAFG00020013659	OGFOD3 (ENSCAFG00020013661)	HEXD (ENSCAFG00020013665)
Red fox	MODERN SPECIES	31	P4HB (ENSVVUG00000020076)	ARHGDIA (ENSVVUG00000000060)	ENSVVUG00000000272	ENSVVUG00000000291	ANAPC11 (ENSVVUG00000000327)	PCYT2 (ENSVVUG00000000345)	SIRT7 (ENSVVUG00000000353)	ENSVVUG00000000377	MAFG (ENSVVUG00000000421)	PYCR1 (ENSVVUG00000000480)	MYADML2 (ENSVVUG00000000508)	NOTUM (ENSVVUG00000000527)	ASPSCR1 (ENSVVUG00000000685)	ENSVVUG00000000722	LRRC45 (ENSVVUG00000000739)	RAC3 (ENSVVUG00000000774) ##22	ENSVVUG00000001108	ENSVVUG00000001150	RFNG (ENSVVUG00000001161)	GPS1 (ENSVVUG00000001175)	DUS1L (ENSVVUG00000001205)	FASN (ENSVVUG00000001447)	CCDC57 (ENSVVUG00000005278)	SLC16A3 (ENSVVUG00000005315)	CSNK1D (ENSVVUG00000005334)	ENSVVUG00000005356	CD7 (ENSVVUG00000005362)	SECTM1 (ENSVVUG00000005369)	ENSVVUG00000005379	OGFOD3 (ENSVVUG00000005384)	HEXDC (ENSVVUG00000005392)
Felidae	ANCESTRAL SPECIES	8	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148243	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT01090000260051.b.a.b	ENSGT00390000005895	ENSGT00390000014852.a
Cat	MODERN SPECIES	245	PPP1R27 (ENSFCAG00000026641)	P4HB (ENSFCAG00000029560)	ENSFCAG00000030567	ALYREF (ENSFCAG00000022549)	ENSFCAG00000016226	NPB (ENSFCAG00000040387)	PCYT2 (ENSFCAG00000030456)	SIRT7 (ENSFCAG00000007807)	MAFG (ENSFCAG00000035323)	PYCR1 (ENSFCAG00000044386)	MYADML2 (ENSFCAG00000015406)	NOTUM (ENSFCAG00000011660)	ASPSCR1 (ENSFCAG00000042003)	CENPX (ENSFCAG00000034437)	LRRC45 (ENSFCAG00000011666)	RAC3 (ENSFCAG00000045564) ##22	DCXR (ENSFCAG00000045929)	ENSFCAG00000011675	RFNG (ENSFCAG00000024656)	GPS1 (ENSFCAG00000011677)	DUS1L (ENSFCAG00000011683)	FASN (ENSFCAG00000011685)	CCDC57 (ENSFCAG00000008326)	SLC16A3 (ENSFCAG00000008328)	CSNK1D (ENSFCAG00000008329)	CD7 (ENSFCAG00000046532)	ENSFCAG00000051862	ENSFCAG00000046356	METRNL (ENSFCAG00000027851)	B3GNTL1 (ENSFCAG00000028428)	TBCD (ENSFCAG00000014022)
Panthera	ANCESTRAL SPECIES	22	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148243	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT01090000260051.b.a.b	ENSGT00390000005895	ENSGT00390000014852.a	ENSGT00390000004691
Tiger	MODERN SPECIES	125	ENSPTIG00000021030	PPP1R27 (ENSPTIG00000002627)	ENSPTIG00000004821	ARHGDIA (ENSPTIG00000005623)	ALYREF (ENSPTIG00000006399)	ANAPC11 (ENSPTIG00000009383)	PCYT2 (ENSPTIG00000010590)	SIRT7 (ENSPTIG00000012630)	ENSPTIG00000012872	MAFG (ENSPTIG00000012995)	PYCR1 (ENSPTIG00000013184)	MYADML2 (ENSPTIG00000013478)	NOTUM (ENSPTIG00000013756)	ENSPTIG00000014627	LRRC45 (ENSPTIG00000016256)	RAC3 (ENSPTIG00000017075) ##22	ENSPTIG00000018178	RFNG (ENSPTIG00000018798)	GPS1 (ENSPTIG00000019603)	DUS1L (ENSPTIG00000021001)	FASN (ENSPTIG00000002605)	SLC16A3 (ENSPTIG00000007615)	CSNK1D (ENSPTIG00000007839)	ENSPTIG00000009467	ENSPTIG00000010778	OGFOD3 (ENSPTIG00000011024)
Panthera_a	ANCESTRAL SPECIES	25	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148243	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT01090000260051.b.a.b	ENSGT00390000005895	ENSGT00390000014852.a	ENSGT00390000004691
leopard	MODERN SPECIES	48	P4HB (ENSPPRG00000009805)	ARHGDIA (ENSPPRG00000010407)	ALYREF (ENSPPRG00000010829)	ANAPC11 (ENSPPRG00000012006)	NPB (ENSPPRG00000012114)	PCYT2 (ENSPPRG00000022510)	SIRT7 (ENSPPRG00000023633)	ENSPPRG00000023584	MAFG (ENSPPRG00000023338)	PYCR1 (ENSPPRG00000001277)	MYADML2 (ENSPPRG00000015152)	NOTUM (ENSPPRG00000002167)	ENSPPRG00000002312	CENPX (ENSPPRG00000003565)	LRRC45 (ENSPPRG00000004552)	RAC3 (ENSPPRG00000004931) ##22	DCXR (ENSPPRG00000005797)	ENSPPRG00000006123	RFNG (ENSPPRG00000006985)	GPS1 (ENSPPRG00000010454)	DUS1L (ENSPPRG00000012135)	FASN (ENSPPRG00000017921)	CCDC57 (ENSPPRG00000023041)	SLC16A3 (ENSPPRG00000000077)	CSNK1D (ENSPPRG00000001991)	ENSPPRG00000002163	ENSPPRG00000016014	OGFOD3 (ENSPPRG00000002469)	HEXD (ENSPPRG00000003095)	CYBC1 (ENSPPRG00000005401)	NARF (ENSPPRG00000007001)
lion	MODERN SPECIES	14	P4HB (ENSPLOG00000014997)	ARHGDIA (ENSPLOG00000014933)	ALYREF (ENSPLOG00000014844)	ENSPLOG00000014793	NPB (ENSPLOG00000014759)	PCYT2 (ENSPLOG00000014574)	SIRT7 (ENSPLOG00000014467)	ENSPLOG00000014440	MAFG (ENSPLOG00000014390)	PYCR1 (ENSPLOG00000014337)	MYADML2 (ENSPLOG00000014294)	NOTUM (ENSPLOG00000014200)	ASPSCR1 (ENSPLOG00000013985)	CENPX (ENSPLOG00000013800)	LRRC45 (ENSPLOG00000013726)	RAC3 (ENSPLOG00000013659) ##22	DCXR (ENSPLOG00000013612)	ENSPLOG00000013532	RFNG (ENSPLOG00000013441)	GPS1 (ENSPLOG00000013204)	DUS1L (ENSPLOG00000013124)	FASN (ENSPLOG00000012847)	CCDC57 (ENSPLOG00000012644)	SLC16A3 (ENSPLOG00000012587)	CSNK1D (ENSPLOG00000012500)	ENSPLOG00000012452	ENSPLOG00000012414
Laurasiatheria_c	ANCESTRAL SPECIES	3	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00910000148243	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000157017.a.b.a	ENSGT00390000005895	ENSGT00390000014852.a
Equus	ANCESTRAL SPECIES		ENSGT00940000159603	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000157017.a.b.a	ENSGT00390000005895	ENSGT00390000014852.a
Donkey	MODERN SPECIES	4	PPP1R27 (ENSEASG00005005812)	P4HB (ENSEASG00005005814)	ARHGDIA (ENSEASG00005037494)	ENSEASG00005034234	ENSEASG00005036237	NPB (ENSEASG00005029058)	PCYT2 (ENSEASG00005005833)	SIRT7 (ENSEASG00005005837)	MAFG (ENSEASG00005036610)	PYCR1 (ENSEASG00005005844)	MYADML2 (ENSEASG00005029638)	NOTUM (ENSEASG00005005852)	ASPSCR1 (ENSEASG00005005864)	CENPX (ENSEASG00005038514)	LRRC45 (ENSEASG00005005869)	RAC3 (ENSEASG00005005875) ##22	DCXR (ENSEASG00005005877)	ENSEASG00005005879	RFNG (ENSEASG00005005880)	GPS1 (ENSEASG00005005883)	DUS1L (ENSEASG00005005886)	FASN (ENSEASG00005005890)	CCDC57 (ENSEASG00005005892)	SLC16A3 (ENSEASG00005005895)	CSNK1D (ENSEASG00005005899)	ENSEASG00005005904	ENSEASG00005005905	TEX19 (ENSEASG00005005907)	UTS2R (ENSEASG00005005908)	OGFOD3 (ENSEASG00005005909)	HEXD (ENSEASG00005005910)
Horse	MODERN SPECIES	2	PPP1R27 (ENSECAG00000008044)	P4HB (ENSECAG00000009583)	ARHGDIA (ENSECAG00000020501)	ALYREF (ENSECAG00000018754)	ENSECAG00000058528	NPB (ENSECAG00000036597)	PCYT2 (ENSECAG00000003512)	SIRT7 (ENSECAG00000019344)	PYCR1 (ENSECAG00000008836)	MYADML2 (ENSECAG00000057977)	ENSECAG00000030019	NOTUM (ENSECAG00000020198)	ASPSCR1 (ENSECAG00000011608)	CENPX (ENSECAG00000017882)	LRRC45 (ENSECAG00000018249)	RAC3 (ENSECAG00000014115) ##22	DCXR (ENSECAG00000009805)	ENSECAG00000040907	RFNG (ENSECAG00000008470)	GPS1 (ENSECAG00000009946)	DUS1L (ENSECAG00000017904)	FASN (ENSECAG00000019125)	CCDC57 (ENSECAG00000044247)	SLC16A3 (ENSECAG00000009524)	CSNK1D (ENSECAG00000009928)	ENSECAG00000051256	CD7 (ENSECAG00000006205)	UTS2R (ENSECAG00000005300)	OGFOD3 (ENSECAG00000018725)	ENSECAG00000055724	HEXD (ENSECAG00000000366)
Chiroptera	ANCESTRAL SPECIES	2	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00910000148243	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT00940000157017.a.b.a	ENSGT00390000005895	ENSGT00390000014852.a	ENSGT00390000004691	ENSGT00940000153514.a.b
Megabat	MODERN SPECIES	2806												ENSPVAG00000013278	ASPSCR1 (ENSPVAG00000013281)	CENPX (ENSPVAG00000013282)	LRRC45 (ENSPVAG00000013284)	RAC3 (ENSPVAG00000013285) ##22
Microchiroptera	ANCESTRAL SPECIES		ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00910000148243	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT00940000157017.a.b.a	ENSGT00390000005895	ENSGT00390000014852.a	ENSGT00390000004691	ENSGT00940000153514.a.b
Greater horseshoe bat	MODERN SPECIES	13	ENSRFEG00010021998	P4HB (ENSRFEG00010005441)	ARHGDIA (ENSRFEG00010005502)	ALYREF (ENSRFEG00010005527)	ANAPC11 (ENSRFEG00010005574)	ENSRFEG00010005589	ENSRFEG00010005761	MAFG (ENSRFEG00010006018)	ENSRFEG00010006039	PYCR1 (ENSRFEG00010006097)	MYADML2 (ENSRFEG00010006161)	NOTUM (ENSRFEG00010006190)	ASPSCR1 (ENSRFEG00010006266)	ENSRFEG00010006356	LRRC45 (ENSRFEG00010006400)	RAC3 (ENSRFEG00010006465) ##22	DCXR (ENSRFEG00010006515)	RFNG (ENSRFEG00010006544)	GPS1 (ENSRFEG00010006597)	DUS1L (ENSRFEG00010006724)	FASN (ENSRFEG00010006788)	CCDC57 (ENSRFEG00010006897)	ENSRFEG00010006971	SLC16A3 (ENSRFEG00010007003)	CSNK1D (ENSRFEG00010007075)	ENSRFEG00010007334	ENSRFEG00010007356	UTS2R (ENSRFEG00010007415)	OGFOD3 (ENSRFEG00010007444)	HEXD (ENSRFEG00010007486)	CYBC1 (ENSRFEG00010007520)
Artiodactyla	ANCESTRAL SPECIES	4	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00950000184814	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148243	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000157017.a.b.a	ENSGT00390000005895	ENSGT00390000014852.a
Suina	ANCESTRAL SPECIES		ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00910000148243	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000165559	ENSGT00390000005895	ENSGT00390000014852.a
Pig	MODERN SPECIES	3	PPP1R27 (ENSSSCG00000037039)	P4HB (ENSSSCG00000039148)	ARHGDIA (ENSSSCG00000034058)	ENSSSCG00000035728	NPB (ENSSSCG00000035837)	ALYREF (ENSSSCG00000032655)	PCYT2 (ENSSSCG00000039650)	SIRT7 (ENSSSCG00000034695)	MAFG (ENSSSCG00000035253)	PYCR1 (ENSSSCG00000034723)	MYADML2 (ENSSSCG00000032974)	NOTUM (ENSSSCG00000039013)	ASPSCR1 (ENSSSCG00000040727)	ENSSSCG00000049515	LRRC45 (ENSSSCG00000040503)	RAC3 (ENSSSCG00000036973) ##22	DCXR (ENSSSCG00000039873)	CBR2 (ENSSSCG00000031851)	RFNG (ENSSSCG00000040385)	GPS1 (ENSSSCG00000033689)	DUS1L (ENSSSCG00000040352)	FASN (ENSSSCG00000029944)	CCDC57 (ENSSSCG00000029553)	SLC16A3 (ENSSSCG00000024018)	CSNK1D (ENSSSCG00000035852)	ENSSSCG00000037364	ENSSSCG00000039807	ENSSSCG00000044039	ENSSSCG00000033221	OGFOD3 (ENSSSCG00000032116)	HEXD (ENSSSCG00000017128)
Chacoan peccary	MODERN SPECIES	825	P4HB (ENSCWAG00000008116)	ARHGDIA (ENSCWAG00000020475)	ALYREF (ENSCWAG00000020454)	ANAPC11 (ENSCWAG00000020447)	NPB (ENSCWAG00000020435)	PCYT2 (ENSCWAG00000020344)	SIRT7 (ENSCWAG00000020288)	ENSCWAG00000020280	MAFG (ENSCWAG00000020274)	PYCR1 (ENSCWAG00000020220)	MYADML2 (ENSCWAG00000020202)	NOTUM (ENSCWAG00000020178)	ASPSCR1 (ENSCWAG00000020153)	CENPX (ENSCWAG00000020139)	LRRC45 (ENSCWAG00000020100)	RAC3 (ENSCWAG00000020090) ##22	DCXR (ENSCWAG00000020077)	ENSCWAG00000020057	RFNG (ENSCWAG00000020009)	GPS1 (ENSCWAG00000019986)	DUS1L (ENSCWAG00000019976)
Artiodactyla_a	ANCESTRAL SPECIES	3	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00950000184814	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000157017.a.b.a	ENSGT00390000005895	ENSGT00390000014852.a
Camelidae	ANCESTRAL SPECIES	38	ENSGT00940000159603	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000157017.a.b.a	ENSGT00390000005895	ENSGT00390000014852.a	ENSGT00390000004691
Arabian camel	MODERN SPECIES	7	PPP1R27 (ENSCDRG00005009610)	P4HB (ENSCDRG00005009507)	ARHGDIA (ENSCDRG00005009353)	ALYREF (ENSCDRG00005009314)	ENSCDRG00005009255	NPB (ENSCDRG00005009222)	PCYT2 (ENSCDRG00005009142)	SIRT7 (ENSCDRG00005008861)	MAFG (ENSCDRG00005008797)	PYCR1 (ENSCDRG00005008751)	MYADML2 (ENSCDRG00005008730)	NOTUM (ENSCDRG00005008627)	ASPSCR1 (ENSCDRG00005008547)	ENSCDRG00005008515	LRRC45 (ENSCDRG00005008391)	RAC3 (ENSCDRG00005008327) ##22	DCXR (ENSCDRG00005008260)	ENSCDRG00005007922	RFNG (ENSCDRG00005007866)	GPS1 (ENSCDRG00005007268)	DUS1L (ENSCDRG00005010940)	CCDC57 (ENSCDRG00005010531)	SLC16A3 (ENSCDRG00005010473)	CSNK1D (ENSCDRG00005010301)	ENSCDRG00005010249	ENSCDRG00005010135	ENSCDRG00005010119	UTS2R (ENSCDRG00005010083)	OGFOD3 (ENSCDRG00005010041)	HEXD (ENSCDRG00005009914)	CYBC1 (ENSCDRG00005009744)
Artiodactyla_b	ANCESTRAL SPECIES	3	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00950000184814	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000157017.a.b.a	ENSGT00390000005895	ENSGT00390000014852.a
Cetacea	ANCESTRAL SPECIES	5	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00950000184814	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000157017.a.b.a	ENSGT00390000005895	ENSGT00390000014852.a
Odontoceti	ANCESTRAL SPECIES	16	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00950000184814	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000157017.a.b.a	ENSGT00390000005895	ENSGT00390000014852.a
Odontoceti_a	ANCESTRAL SPECIES	14	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00950000184814	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000157017.a.b.a	ENSGT00390000005895	ENSGT00390000014852.a
Odontoceti_b	ANCESTRAL SPECIES	16	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00950000184814	ENSGT00550000075186.j	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000157017.a.b.a	ENSGT00390000005895	ENSGT00390000014852.a
Monodontidae	ANCESTRAL SPECIES	16	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186.j	ENSGT00950000184814	ENSGT00550000075186.i.b	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279	ENSGT00940000157017.a.b.a	ENSGT00390000005895	ENSGT00390000014852.a
Beluga whale	MODERN SPECIES	26	ALYREF (ENSDLEG00000003322)	ENSDLEG00000003312	ANAPC11 (ENSDLEG00000003304)	ENSDLEG00000003295	ENSDLEG00000003289	ENSDLEG00000003287	PCYT2 (ENSDLEG00000003270)	SIRT7 (ENSDLEG00000003254)	MAFG (ENSDLEG00000003244)	PYCR1 (ENSDLEG00000003233)	MYADML2 (ENSDLEG00000003227)	NOTUM (ENSDLEG00000003212)	ASPSCR1 (ENSDLEG00000003199)	CENPX (ENSDLEG00000003186)	LRRC45 (ENSDLEG00000003170)	RAC3 (ENSDLEG00000003150) ##22	DCXR (ENSDLEG00000003136)	ENSDLEG00000003126	RFNG (ENSDLEG00000003114)	GPS1 (ENSDLEG00000003087)	DUS1L (ENSDLEG00000003068)	FASN (ENSDLEG00000008431)	CCDC57 (ENSDLEG00000008296)	SLC16A3 (ENSDLEG00000008258)	CSNK1D (ENSDLEG00000008171)	ENSDLEG00000008103	SECTM1 (ENSDLEG00000008088)	TEX19 (ENSDLEG00000008078)	UTS2R (ENSDLEG00000008066)	OGFOD3 (ENSDLEG00000008049)	HEXDC (ENSDLEG00000008029)
Narwhal	MODERN SPECIES	316	ENSMMNG00015019450	PPP1R27 (ENSMMNG00015019423)	P4HB (ENSMMNG00015019364)	ARHGDIA (ENSMMNG00015019312)	ALYREF (ENSMMNG00015019283)	ENSMMNG00015019254	NPB (ENSMMNG00015019234)	PCYT2 (ENSMMNG00015019018)	SIRT7 (ENSMMNG00015018944)	MAFG (ENSMMNG00015018924)	PYCR1 (ENSMMNG00015018894)	NOTUM (ENSMMNG00015018857)	ASPSCR1 (ENSMMNG00015018793)	CENPX (ENSMMNG00015018739)	LRRC45 (ENSMMNG00015018685)	RAC3 (ENSMMNG00015018661) ##22	DCXR (ENSMMNG00015018638)	ENSMMNG00015018606	RFNG (ENSMMNG00015018574)	GPS1 (ENSMMNG00015018479)	DUS1L (ENSMMNG00015018434)	FASN (ENSMMNG00015018354)	CCDC57 (ENSMMNG00015018313)	SLC16A3 (ENSMMNG00015018282)	CSNK1D (ENSMMNG00015018144)	ENSMMNG00015018114	ENSMMNG00015018090	TEX19 (ENSMMNG00015018074)	UTS2R (ENSMMNG00015018049)	OGFOD3 (ENSMMNG00015018012)	HEXD (ENSMMNG00015017931)
Vaquita	MODERN SPECIES	12	PPP1R27 (ENSPSNG00000014100)	P4HB (ENSPSNG00000014031)	ARHGDIA (ENSPSNG00000013962)	ALYREF (ENSPSNG00000013832)	ENSPSNG00000013766	ENSPSNG00000013701	PCYT2 (ENSPSNG00000013326)	SIRT7 (ENSPSNG00000013257)	MAFG (ENSPSNG00000021813)	PYCR1 (ENSPSNG00000021790)	MYADML2 (ENSPSNG00000021769)	NOTUM (ENSPSNG00000021747)	ASPSCR1 (ENSPSNG00000021675)	CENPX (ENSPSNG00000021627)	LRRC45 (ENSPSNG00000021598)	RAC3 (ENSPSNG00000021585) ##22	DCXR (ENSPSNG00000021569)	ENSPSNG00000021520	RFNG (ENSPSNG00000021485)	GPS1 (ENSPSNG00000021456)	DUS1L (ENSPSNG00000021412)	CCDC57 (ENSPSNG00000021293)	SLC16A3 (ENSPSNG00000021272)	CSNK1D (ENSPSNG00000021184)	ENSPSNG00000021096	ENSPSNG00000021064	TEX19 (ENSPSNG00000021055)	UTS2R (ENSPSNG00000021043)	OGFOD3 (ENSPSNG00000021025)	HEXD (ENSPSNG00000020963)	CYBC1 (ENSPSNG00000020901)
Dolphin	MODERN SPECIES	1776													ASPSCR1 (ENSTTRG00000001575)	CENPX (ENSTTRG00000001576)	LRRC45 (ENSTTRG00000001577)	RAC3 (ENSTTRG00000001578) ##22	DCXR (ENSTTRG00000001579)	RFNG (ENSTTRG00000001580)	GPS1 (ENSTTRG00000001582)	DUS1L (ENSTTRG00000001583)
Sperm whale	MODERN SPECIES	875														ENSPCTG00005021714	LRRC45 (ENSPCTG00005021695)	RAC3 (ENSPCTG00005021668) ##22	ENSPCTG00005021654
Blue whale	MODERN SPECIES	12	PPP1R27 (ENSBMSG00010017128)	P4HB (ENSBMSG00010017152)	ARHGDIA (ENSBMSG00010017205)	ALYREF (ENSBMSG00010017240)	ANAPC11 (ENSBMSG00010017282)	NPB (ENSBMSG00010017304)	PCYT2 (ENSBMSG00010017387)	SIRT7 (ENSBMSG00010017558)	MAFG (ENSBMSG00010017612)	PYCR1 (ENSBMSG00010017673)	MYADML2 (ENSBMSG00010017733)	NOTUM (ENSBMSG00010017763)	ASPSCR1 (ENSBMSG00010017867)	CENPX (ENSBMSG00010017952)	LRRC45 (ENSBMSG00010018014)	RAC3 (ENSBMSG00010018126) ##22	DCXR (ENSBMSG00010018198)	ENSBMSG00010018250	RFNG (ENSBMSG00010018333)	GPS1 (ENSBMSG00010018414)	DUS1L (ENSBMSG00010018539)	CCDC57 (ENSBMSG00010020798)	SLC16A3 (ENSBMSG00010020821)	CSNK1D (ENSBMSG00010020861)	ENSBMSG00010020922	ENSBMSG00010020943	ENSBMSG00010020958	ENSBMSG00010020970	UTS2R (ENSBMSG00010020982)	OGFOD3 (ENSBMSG00010021003)	HEXD (ENSBMSG00010021031)
Pecora	ANCESTRAL SPECIES	1	ENSGT00940000159603	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279.m	ENSGT00390000014279.n	ENSGT00940000157017.a.b.a	ENSGT00390000005895
Yarkand deer	MODERN SPECIES	28	MCRIP1 (ENSCHYG00000024250)	PPP1R27 (ENSCHYG00000024219)	P4HB (ENSCHYG00000024081)	ENSCHYG00000024063	ANAPC11 (ENSCHYG00000024045)	ENSCHYG00000024022	PCYT2 (ENSCHYG00000023621)	SIRT7 (ENSCHYG00000023516)	MAFG (ENSCHYG00000023489)	PYCR1 (ENSCHYG00000023387)	MYADML2 (ENSCHYG00000023365)	NOTUM (ENSCHYG00000023320)	ASPSCR1 (ENSCHYG00000023260)	ENSCHYG00000023208	LRRC45 (ENSCHYG00000023019)	RAC3 (ENSCHYG00000022963) ##22	DCXR (ENSCHYG00000022885)	ENSCHYG00000022835	RFNG (ENSCHYG00000022812)	GPS1 (ENSCHYG00000022640)	DUS1L (ENSCHYG00000022440)	FASN (ENSCHYG00000021802)	CCDC57 (ENSCHYG00000021504)	SLC16A3 (ENSCHYG00000021398)	CSNK1D (ENSCHYG00000020797)	ENSCHYG00000020725	ENSCHYG00000020630	ENSCHYG00000020586	ENSCHYG00000020574	ENSCHYG00000020553	UTS2R (ENSCHYG00000020531)
Percora_a	ANCESTRAL SPECIES	2	ENSGT00940000159603	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499	ENSGT00390000014279.m	ENSGT00390000014279.n	ENSGT00940000157017.a.b.a	ENSGT00390000005895
Siberian musk deer	MODERN SPECIES	1210	P4HB (ENSMMSG00000023476)	ENSMMSG00000023472	ARHGDIA (ENSMMSG00000023467)	ALYREF (ENSMMSG00000023460)	ANAPC11 (ENSMMSG00000023453)	NPB (ENSMMSG00000023444)	PCYT2 (ENSMMSG00000023411)	SIRT7 (ENSMMSG00000023387)	MAFG (ENSMMSG00000023377)	ENSMMSG00000023373	MYADML2 (ENSMMSG00000023365)	NOTUM (ENSMMSG00000023359)	ASPSCR1 (ENSMMSG00000023339)	CENPX (ENSMMSG00000023328)	LRRC45 (ENSMMSG00000023309)	RAC3 (ENSMMSG00000023291) ##22	DCXR (ENSMMSG00000023280)	ENSMMSG00000023264	RFNG (ENSMMSG00000023247)	GPS1 (ENSMMSG00000023195)	DUS1L (ENSMMSG00000023171)	FASN (ENSMMSG00000023145)	CCDC57 (ENSMMSG00000023135)	SLC16A3 (ENSMMSG00000023127)	CSNK1D (ENSMMSG00000023107)	ENSMMSG00000023096	ENSMMSG00000023089	ENSMMSG00000023083	ENSMMSG00000023080	UTS2R (ENSMMSG00000023072)	OGFOD3 (ENSMMSG00000023056)
Bovidae	ANCESTRAL SPECIES	2	ENSGT00940000159603	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499.c.a	ENSGT00530000064499.c.b.a	ENSGT00390000014279.m	ENSGT00390000014279.n	ENSGT00940000157017.a.b.a
Caprinae	ANCESTRAL SPECIES	1	ENSGT00940000159603	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00940000170700	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499.c.a.a	ENSGT00530000064499.c.b.b.b	ENSGT00530000064499.c.b.a	ENSGT00530000064499.d	ENSGT00390000014279.m
Goat	MODERN SPECIES	10	MCRIP1 (ENSCHIG00000026672)	PPP1R27 (ENSCHIG00000013059)	P4HB (ENSCHIG00000026541)	ARHGDIA (ENSCHIG00000021653)	ALYREF (ENSCHIG00000017396)	ANAPC11 (ENSCHIG00000013891)	NPB (ENSCHIG00000021218)	PCYT2 (ENSCHIG00000007479)	SIRT7 (ENSCHIG00000016745)	MAFG (ENSCHIG00000015647)	PYCR1 (ENSCHIG00000026809)	MYADML2 (ENSCHIG00000011879)	NOTUM (ENSCHIG00000017267)	ASPSCR1 (ENSCHIG00000022678)	LRRC45 (ENSCHIG00000024091)	RAC3 (ENSCHIG00000021241) ##22	DCXR (ENSCHIG00000026975)	ENSCHIG00000023379	RFNG (ENSCHIG00000026042)	GPS1 (ENSCHIG00000026834)	DUS1L (ENSCHIG00000019382)	FASN (ENSCHIG00000018422)	ENSCHIG00000024268	SLC16A3 (ENSCHIG00000012621)	CSNK1D (ENSCHIG00000011956)	ENSCHIG00000018865	ENSCHIG00000014871	ENSCHIG00000007906	ENSCHIG00000025339	ENSCHIG00000020373	UTS2R (ENSCHIG00000012176)
Rambouillet Sheep	MODERN SPECIES	2	PPP1R27 (ENSOARG00020025219)	P4HB (ENSOARG00020025236)	ARHGDIA (ENSOARG00020025245)	ALYREF (ENSOARG00020025263)	ANAPC11 (ENSOARG00020025279)	NPB (ENSOARG00020025289)	PCYT2 (ENSOARG00020025311)	SIRT7 (ENSOARG00020025373)	MAFG (ENSOARG00020025383)	PYCR1 (ENSOARG00020025392)	MYADML2 (ENSOARG00020025407)	NOTUM (ENSOARG00020025412)	ASPSCR1 (ENSOARG00020025424)	ENSOARG00020025443	LRRC45 (ENSOARG00020025451)	RAC3 (ENSOARG00020025472) ##22	ENSOARG00020025476	ENSOARG00020025492	ENSOARG00020025535	RFNG (ENSOARG00020025542)	GPS1 (ENSOARG00020025561)	DUS1L (ENSOARG00020025586)	FASN (ENSOARG00020025689)	CCDC57 (ENSOARG00020026029)	SLC16A3 (ENSOARG00020026042)	CSNK1D (ENSOARG00020026051)	ENSOARG00020026058	ENSOARG00020026062	ENSOARG00020026063	ENSOARG00020026064	ENSOARG00020026067
Bovinae	ANCESTRAL SPECIES		ENSGT00940000159603	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499.c.a	ENSGT00940000173635.a.a	ENSGT00530000064499.c.b.a.a	ENSGT00530000064499.c.b.b.b.a	ENSGT00530000064499.c.b.b.a
Bos	ANCESTRAL SPECIES	1	ENSGT00940000159603	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a.d	ENSGT00940000154873.g.a.c.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499.c.a	ENSGT00940000173635.a.a	ENSGT00530000064499.c.b.a.a	ENSGT00530000064499.c.b.b.b.a
Bos_b	ANCESTRAL SPECIES	21	ENSGT00940000159603	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00550000075186.l	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a.d	ENSGT00940000154873.g.a.c.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499.c.a	ENSGT00940000173635.a.a	ENSGT00940000173635.b	ENSGT00530000064499.c.b.b.b.a
Hybrid Bos Indicus	MODERN SPECIES	10	PPP1R27 (ENSBIXG00005006926)	P4HB (ENSBIXG00005002214)	ARHGDIA (ENSBIXG00005015102)	ALYREF (ENSBIXG00005015130)	ENSBIXG00005006558	NPB (ENSBIXG00005002236)	PCYT2 (ENSBIXG00005015341)	SIRT7 (ENSBIXG00005015367)	MAFG (ENSBIXG00005015395)	PYCR1 (ENSBIXG00005015511)	MYADML2 (ENSBIXG00005002325)	NOTUM (ENSBIXG00005015579)	ASPSCR1 (ENSBIXG00005000232)	ENSBIXG00005015625	LRRC45 (ENSBIXG00005015698)	RAC3 (ENSBIXG00005015712) ##22	DCXR (ENSBIXG00005015724)	ENSBIXG00005015749	RFNG (ENSBIXG00005015767)	GPS1 (ENSBIXG00005000150)	DUS1L (ENSBIXG00005015890)	FASN (ENSBIXG00005016057)	CCDC57 (ENSBIXG00005006752)	SLC16A3 (ENSBIXG00005002588)	CSNK1D (ENSBIXG00005016357)	ENSBIXG00005016381	ENSBIXG00005016400	ENSBIXG00005016412	ENSBIXG00005016431	ENSBIXG00005006575	ENSBIXG00005006351
Cow	MODERN SPECIES	10	P4HB (ENSBTAG00000006045)	ARHGDIA (ENSBTAG00000030209)	ALYREF (ENSBTAG00000008498)	ANAPC11 (ENSBTAG00000001937)	NPB (ENSBTAG00000013898)	PCYT2 (ENSBTAG00000001868)	SIRT7 (ENSBTAG00000000039)	MAFG (ENSBTAG00000000040)	PYCR1 (ENSBTAG00000000042)	MYADML2 (ENSBTAG00000000044)	NOTUM (ENSBTAG00000053558)	ASPSCR1 (ENSBTAG00000004632)	CENPX (ENSBTAG00000004108)	LRRC45 (ENSBTAG00000004111)	DCXR (ENSBTAG00000008747)	RAC3 (ENSBTAG00000022927) ##22	ENSBTAG00000051698	DCXR (ENSBTAG00000047043)	RFNG (ENSBTAG00000011575)	GPS1 (ENSBTAG00000019317)	DUS1L (ENSBTAG00000047760)	FASN (ENSBTAG00000015980)	CCDC57 (ENSBTAG00000019321)	SLC16A3 (ENSBTAG00000017461)	CSNK1D (ENSBTAG00000019986)	CD7 (ENSBTAG00000011359)	ENSBTAG00000053944	ENSBTAG00000050786	ENSBTAG00000052537	ENSBTAG00000024934	SECTM1 (ENSBTAG00000038910)
Bos_a	ANCESTRAL SPECIES		ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00390000018868.B.a	ENSGT00550000075186	ENSGT00940000158204.a	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a.d	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873.g.a.c.a	ENSGT00940000154873.g.b	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b	ENSGT00390000013965	ENSGT00530000064499.c.b.a.a	ENSGT00530000064499.c.b.b.b.a	ENSGT00530000064499.c.b.b.a.b	ENSGT00940000173635.a.b	ENSGT00530000064499.c.b.a.b
Wild yak	MODERN SPECIES	1772	PPP1R27 (ENSBMUG00000026385)	P4HB (ENSBMUG00000026384)	ARHGDIA (ENSBMUG00000026382)	ENSBMUG00000026378	ANAPC11 (ENSBMUG00000026374)	NPB (ENSBMUG00000026371)	PCYT2 (ENSBMUG00000026369)	SIRT7 (ENSBMUG00000026362)	MAFG (ENSBMUG00000026361)	PYCR1 (ENSBMUG00000026360)	MYADML2 (ENSBMUG00000026357)	NOTUM (ENSBMUG00000026356)	ASPSCR1 (ENSBMUG00000026355)	CENPX (ENSBMUG00000026353)	LRRC45 (ENSBMUG00000026352)	RAC3 (ENSBMUG00000026351) ##22	ENSBMUG00000026348	RFNG (ENSBMUG00000026347)	GPS1 (ENSBMUG00000026346)	DUS1L (ENSBMUG00000026345)	FASN (ENSBMUG00000026205)	CCDC57 (ENSBMUG00000025188)	SLC16A3 (ENSBMUG00000025175)	CSNK1D (ENSBMUG00000025164)	ENSBMUG00000025135
Domestic yak	MODERN SPECIES	10	PPP1R27 (ENSBGRG00000025657)	P4HB (ENSBGRG00000003814)	ARHGDIA (ENSBGRG00000003861)	ALYREF (ENSBGRG00000003921)	ANAPC11 (ENSBGRG00000003986)	NPB (ENSBGRG00000004008)	PCYT2 (ENSBGRG00000004030)	SIRT7 (ENSBGRG00000004185)	ENSBGRG00000004242	PYCR1 (ENSBGRG00000004273)	MYADML2 (ENSBGRG00000004356)	NOTUM (ENSBGRG00000004379)	ASPSCR1 (ENSBGRG00000004411)	ENSBGRG00000004458	LRRC45 (ENSBGRG00000004499)	ENSBGRG00000004878 ##22	ENSBGRG00000004937	ENSBGRG00000004998	ENSBGRG00000005043	RFNG (ENSBGRG00000005089)	GPS1 (ENSBGRG00000005132)	DUS1L (ENSBGRG00000005237)	FASN (ENSBGRG00000005349)	ENSBGRG00000005775	ENSBGRG00000005807	SLC16A3 (ENSBGRG00000005938)	CSNK1D (ENSBGRG00000005984)	ENSBGRG00000006053	ENSBGRG00000006085	ENSBGRG00000006117	ENSBGRG00000006139
Anura	ANCESTRAL SPECIES	156	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00950000184814	ENSGT00550000075186	ENSGT00940000158204	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a	ENSGT00950000182933.A.a.a	ENSGT00390000015892	ENSGT00940000156853	ENSGT00390000002725	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873
Leishan spiny toad	MODERN SPECIES	3	PPP1R27 (ENSLLEG00000024447)	P4HB (ENSLLEG00000024303)	ALYREF (ENSLLEG00000024115)	ENSLLEG00000024044	ANAPC11 (ENSLLEG00000024010)	ENSLLEG00000023951	PCYT2 (ENSLLEG00000023287)	SIRT7 (ENSLLEG00000023129)	MAFG (ENSLLEG00000023068)	ENSLLEG00000023044	ENSLLEG00000022594	MYADML2 (ENSLLEG00000022540)	NOTUM (ENSLLEG00000022427)	ASPSCR1 (ENSLLEG00000021997)	LRRC45 (ENSLLEG00000021617)	RAC3 (ENSLLEG00000021407) ##22	DCXR (ENSLLEG00000021335)	DUS1L (ENSLLEG00000021106)	ENSLLEG00000021061	GPS1 (ENSLLEG00000020706)	RFNG (ENSLLEG00000020616)	FASN (ENSLLEG00000016893)	CCDC57 (ENSLLEG00000016227)	SLC16A3 (ENSLLEG00000016116)	CSNK1D (ENSLLEG00000014293)	TRAPPC5 (ENSLLEG00000014151)	MBTD1 (ENSLLEG00000013860)	UTP18 (ENSLLEG00000031057)	ENSLLEG00000031055	TRIM25 (ENSLLEG00000031053)	ENSLLEG00000031048
Frog	MODERN SPECIES	1	ENSXETG00000044963	ENSXETG00000036642	cog1 (ENSXETG00000009979)	ptrh1 (ENSXETG00000009980)	birc5l (ENSXETG00000009983)	tha1p (ENSXETG00000009985)	psmc3ip (ENSXETG00000009986)	socs3 (ENSXETG00000024632)	rerg (ENSXETG00000009987)	ENSXETG00000012835	abca8 (ENSXETG00000021959)	ENSXETG00000042830	abca5 (ENSXETG00000031795)	btbd17 (ENSXETG00000039335)	gpr142 (ENSXETG00000031481)	rac3 (ENSXETG00000033871) ##22	dcxr (ENSXETG00000004630)	etv4 (ENSXETG00000030031)	ENSXETG00000041877	ENSXETG00000037864	atp6v0a1 (ENSXETG00000004635)	ccdc137 (ENSXETG00000033252)	pde6g (ENSXETG00000042418)	PDE6G (ENSXETG00000040009)	tspan10 (ENSXETG00000033433)	c17orf80 (ENSXETG00000035627)	cpsf4l (ENSXETG00000004641)	cdc42ep4 (ENSXETG00000004642)	sdk2 (ENSXETG00000004643)	ENSXETG00000036760	rpl38 (ENSXETG00000025319)
Actinopterygii	ANCESTRAL SPECIES	171															ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT01070000253744.a.a.a.b.a.b	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b.a.a	ENSGT00910000147748	ENSGT00940000153536.a.a	ENSGT00940000153536.a.b.b	ENSGT00940000161333	ENSGT00390000018512	ENSGT00940000159924
Reedfish	MODERN SPECIES	5	ENSECRG00000014757	ubald2 (ENSECRG00000014736)	RNF157 (ENSECRG00000023066)	foxj1a (ENSECRG00000023065)	tsen54 (ENSECRG00000023064)	UTS2R (ENSECRG00000023063)	ENSECRG00000023062	ogfod3 (ENSECRG00000023061)	HEXD (ENSECRG00000023060)	cybc1 (ENSECRG00000023059)	narf (ENSECRG00000023058)	fam20a (ENSECRG00000023057)	ENSECRG00000023056	ENSECRG00000023055	LRRC45 (ENSECRG00000023054)	rac3a (ENSECRG00000023053) ##22	rfng (ENSECRG00000023052)	gps1 (ENSECRG00000023051)	dus1l (ENSECRG00000023050)	ccdc57 (ENSECRG00000023049)	CCDC57 (ENSECRG00000023048)	slc16a3a (ENSECRG00000023047)	csnk1da (ENSECRG00000023046)	c1qtnf1 (ENSECRG00000023045)	engase (ENSECRG00000023044)	RBFOX3 (ENSECRG00000023043)	enpp7.2 (ENSECRG00000023041)	cbx2 (ENSECRG00000023040)	cbx8a (ENSECRG00000023039)	cbx4 (ENSECRG00000023038)	tbc1d16 (ENSECRG00000023037)
Neopterygii	ANCESTRAL SPECIES	6	ENSGT00940000156544.b	ENSGT00940000158269	ENSGT00940000156544.a	ENSGT00390000017136	ENSGT00940000156505	ENSGT00940000157054	ENSGT00530000063996.a	ENSGT00940000155575	ENSGT00940000159093	ENSGT00940000156833	ENSGT00950000183183.a	ENSGT00940000155148.b	ENSGT00950000182951.A.b	ENSGT00940000166249	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT01070000253744.a.a.a.b.a.b	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b.a.a	ENSGT00910000147748	ENSGT00940000153536.a.a	ENSGT00940000155813	ENSGT00390000013698	ENSGT00940000153536.a.b.b	ENSGT00940000161333
Spotted gar	MODERN SPECIES	648	SLC39A11 (ENSLOCG00000012489)	ENSLOCG00000017756	SSTR2 (ENSLOCG00000017755)	COG1 (ENSLOCG00000012473)	rgs9a (ENSLOCG00000012468)	gna13b (ENSLOCG00000012460)	AMZ2 (ENSLOCG00000012454)	slc16a6a (ENSLOCG00000012447)	arsg (ENSLOCG00000012439)	wipi1 (ENSLOCG00000012426)	zgc:86896 (ENSLOCG00000012417)	prkar1ab (ENSLOCG00000012407)	fam20a (ENSLOCG00000012394)	ENSLOCG00000012387	LRRC45 (ENSLOCG00000012375)	rac3b (ENSLOCG00000012372) ##22	dcxr (ENSLOCG00000012368)	rfng (ENSLOCG00000012361)	gps1 (ENSLOCG00000012349)	ENSLOCG00000017754	dus1l (ENSLOCG00000012342)	ccdc57 (ENSLOCG00000012320)	CCDC57 (ENSLOCG00000012313)	slc16a3a (ENSLOCG00000012307)	csnk1da (ENSLOCG00000012299)	c1qtnf1 (ENSLOCG00000012295)	engase (ENSLOCG00000012284)	RBFOX3 (ENSLOCG00000012267)	enpp7.2 (ENSLOCG00000012260)	cbx2 (ENSLOCG00000012253)	nog3 (ENSLOCG00000017753)
Osteoglossocephalai	ANCESTRAL SPECIES	155	ENSGT00940000158172	ENSGT00720000108863.k	ENSGT00940000153560.b.a.a.o	ENSGT00940000156964.A	ENSGT00940000156505.s	ENSGT00940000157054	ENSGT00530000063996.a	ENSGT00940000155575	ENSGT00940000159093	ENSGT00940000156833	ENSGT00950000183183.a	ENSGT00940000155148.b	ENSGT00950000182951.A.b	ENSGT00940000166249	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT01070000253744.a.a.a.b.a.b	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b.b.a	ENSGT00910000147748	ENSGT00940000153536.a.a.a.a	ENSGT00940000155813.i.b	ENSGT00390000013698	ENSGT00390000018512	ENSGT00940000159924.c.b
Clupeocephala	DUPLICATION
Clupeocephala	DUPLICATION
Clupeocephala	DUPLICATION
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00940000153500.a.b.e.a.a ##22
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00940000153500.a.b.e.a.a ##22
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT00940000153500.a.b.e.a.a ##22
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000153500.a.b.e.a.a ##22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000153500.a.b.e.a.a ##22
Salmo	ANCESTRAL SPECIES																	ENSGT00940000153500.a.b.e.a.a ##22
Atlantic salmon	MODERN SPECIES		SLC38A10 (ENSSSAG00000001360)	ENSSSAG00000100770	TEPSIN (ENSSSAG00000001496)	ENSSSAG00000001501	ENSSSAG00000001503	ENSSSAG00000088837	AMZ2 (ENSSSAG00000001511)	SLC16A6 (ENSSSAG00000001513)	ENSSSAG00000104951	WIPI1 (ENSSSAG00000001532)	ENSSSAG00000110654	prkar1ab (ENSSSAG00000042751)	FAM20A (ENSSSAG00000001593)	ENSSSAG00000001610	ENSSSAG00000087884	rac3b (ENSSSAG00000082341) ##22	ENSSSAG00000109946	ENSSSAG00000110426	RFNG (ENSSSAG00000043590)	csn1 (ENSSSAG00000001696)	ccdc57 (ENSSSAG00000001887)	SLC16A3 (ENSSSAG00000106986)	CSNK1D (ENSSSAG00000121830)	KIF19 (ENSSSAG00000003520)	ENSSSAG00000003585	ENSSSAG00000088774	ttyh2 (ENSSSAG00000003624)	RPL38 (ENSSSAG00000003697)	SDK2 (ENSSSAG00000003853)	CDC42EP4 (ENSSSAG00000120518)	ENSSSAG00000005159
Huchen	MODERN SPECIES	246	gjb8 (ENSHHUG00000026129)	gja3 (ENSHHUG00000026126)	ZMYM2 (ENSHHUG00000026118)	mphosph8 (ENSHHUG00000026099)	dbi (ENSHHUG00000025999)	C1QL2 (ENSHHUG00000025993)	ENSHHUG00000025990	ENSHHUG00000049410	ENSHHUG00000049407	EN1 (ENSHHUG00000049404)	insig2 (ENSHHUG00000049373)	ccdc93 (ENSHHUG00000049266)	ENSHHUG00000049264	zgc:152951 (ENSHHUG00000049262)	ENSHHUG00000049260	RAC3 (ENSHHUG00000049093) ##22
Otomorpha	ANCESTRAL SPECIES																	ENSGT00940000153500.a.b.e.a.a ##22
Otophysi	ANCESTRAL SPECIES																	ENSGT00940000153500.a.b.e.a.a ##22
Cyprinoidei	ANCESTRAL SPECIES																	ENSGT00940000153500.a.b.e.a.a ##22
Cyprininae	ANCESTRAL SPECIES																	ENSGT00940000153500.a.b.e.a.a ##22
Goldfish	MODERN SPECIES	3	ENSCARG00000059865	sox9a (ENSCARG00000059891)	ENSCARG00000060184	ENSCARG00000060193	ARHGAP22 (ENSCARG00000060206)	mapk8b (ENSCARG00000060313)	ENSCARG00000062281	gdf10b (ENSCARG00000062286)	ENSCARG00000062298	rbp3 (ENSCARG00000001948)	ENSCARG00000002019	ubtd1b (ENSCARG00000002192)	FAM20A (ENSCARG00000002251)	ENSCARG00000002475	ENSCARG00000002485	RAC3 (ENSCARG00000002501) ##22	col1a1b (ENSCARG00000002562)	gngt2b (ENSCARG00000002749)	ENSCARG00000002756	lsm12b (ENSCARG00000002763)	ENSCARG00000002824	ENSCARG00000002831	ENSCARG00000002836	ENSCARG00000002841	cabp5a (ENSCARG00000002849)	zgc:92040 (ENSCARG00000002857)	ENSCARG00000002866	ENSCARG00000002870	zgc:123217 (ENSCARG00000002874)	ENSCARG00000002883	ENSCARG00000002897
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00940000153500.a.b.e.a.b ##22
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00940000153500.a.b.e.a.b ##22
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT00940000153500.a.b.e.a.b ##22
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000153500.a.b.e.a.b ##22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000153500.a.b.e.a.b ##22
Salmo	ANCESTRAL SPECIES																	ENSGT00940000153500.a.b.e.a.b ##22
Atlantic salmon	MODERN SPECIES	20	ENSSSAG00000058531	ENSSSAG00000058540	faap100 (ENSSSAG00000058550)	fscn2 (ENSSSAG00000058557) ##35	BAHCC1 (ENSSSAG00000058579)	slc38a10 (ENSSSAG00000058608)	ndufaf8 (ENSSSAG00000058945)	ENSSSAG00000042103	SLC16A6 (ENSSSAG00000042142)	arsg (ENSSSAG00000042159)	WIPI1 (ENSSSAG00000042286)	prkar1ab (ENSSSAG00000117050)	FAM20A (ENSSSAG00000042950)	LRRC45 (ENSSSAG00000043099)	ENSSSAG00000087474	rac3b (ENSSSAG00000043548) ##22	dcxr (ENSSSAG00000117358)	rfng (ENSSSAG00000001632)	GPS1 (ENSSSAG00000043783)	ENSSSAG00000046246	ccdc57 (ENSSSAG00000046776)	CCDC57 (ENSSSAG00000068188)	SLC16A3 (ENSSSAG00000003485)	ENSSSAG00000099970	CSNK1D (ENSSSAG00000068205)	KIF19 (ENSSSAG00000096598)	ENSSSAG00000068691	ttyh2 (ENSSSAG00000107409)	ENSSSAG00000089347	SDK2 (ENSSSAG00000069380)	ENSSSAG00000118115
Clupeocephala	ANCESTRAL SPECIES	173					ENSGT00940000156964.A	ENSGT00940000156505.s	ENSGT00940000157054	ENSGT00530000063996.a	ENSGT00940000155575.i.a	ENSGT00940000159093	ENSGT00940000156833.a	ENSGT00940000155148.a.b	ENSGT00950000182951.A.b	ENSGT00940000166249	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00390000018512	ENSGT00940000156193	ENSGT00390000004832	ENSGT00440000033742.a.b.d	ENSGT00390000012364.a	ENSGT00940000153469.a.b	ENSGT00940000153469.a.a.k	ENSGT00940000156498.g.a	ENSGT00940000155641.g.a	ENSGT00390000005481	ENSGT00730000111057.c
Otomorpha	ANCESTRAL SPECIES	233											ENSGT00940000156833.a	ENSGT00940000155148.a.b	ENSGT00950000182951.A.b	ENSGT00940000166249	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00940000155575.j	ENSGT00940000156833.b	ENSGT00950000183183.a	ENSGT00940000155148.a.a	ENSGT00940000153500.a.b.f ##22	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000153536.a.b.a.b	ENSGT00940000158181.d	ENSGT00390000018512	ENSGT00940000156193	ENSGT00390000004832	ENSGT00440000033742.a.b.d
Otophysi	ANCESTRAL SPECIES	63	ENSGT00940000153692.B.a	ENSGT00940000155133.a.a.b	ENSGT00940000161964.g.b	ENSGT00940000157214.f.a	ENSGT00940000159802	ENSGT00390000014726.c.a	ENSGT00390000014726.c.b	ENSGT00940000157727.x.a	ENSGT00940000158630.h	ENSGT00390000015583	ENSGT00940000155032.l	ENSGT00940000155148.a.b	ENSGT00950000182951.A.b	ENSGT00940000166249	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00390000005672.a.a	ENSGT00940000156584.e.a	ENSGT00940000163871.a.c	ENSGT01100000263525.b.a.p	ENSGT00390000011938	ENSGT00940000155311.A.b	ENSGT00390000006956.a	ENSGT00950000183150.b	ENSGT00940000156447.a.a	ENSGT00440000033966	ENSGT00390000016262	ENSGT00940000159871.b.a.a	ENSGT00390000014892
Characiphysae	ANCESTRAL SPECIES	72	ENSGT00950000183015.B.a.a	ENSGT00940000153692.B.a	ENSGT00940000161964.g.b	ENSGT00940000155133.a.a.b	ENSGT00940000157214.f.a	ENSGT00940000159802	ENSGT00390000014726.c.b	ENSGT00940000157727.x.a	ENSGT00940000158630.h	ENSGT00390000015583	ENSGT00940000155032.l	ENSGT00940000155148.a.b	ENSGT00950000182951.A.b	ENSGT00940000166249	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00390000005672.a.a	ENSGT00940000156584.e.a	ENSGT00940000163871.a.c	ENSGT01100000263525.b.a.p	ENSGT00390000011938	ENSGT00940000155311.A.b	ENSGT00390000006956.a	ENSGT00950000183150.b	ENSGT00940000156447.a.a	ENSGT00440000033966	ENSGT00390000016262	ENSGT00940000159871.b.a.a	ENSGT00390000014892
Characiphysae_b	ANCESTRAL SPECIES	80	ENSGT00940000156026.f	ENSGT00950000183015.B.a.a	ENSGT00940000153692.B.a	ENSGT00940000161964.g.b	ENSGT00940000157214.f.a	ENSGT00940000159802	ENSGT00390000014726.c.b	ENSGT00940000157727.x.a	ENSGT00940000158630.h	ENSGT00390000015583	ENSGT00940000155032.l	ENSGT00940000155148.a.b	ENSGT00950000182951.A.b	ENSGT00940000166249	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00390000005672.a.a	ENSGT00940000156584.e.a	ENSGT00940000163871.a.c	ENSGT01100000263525.b.a.p	ENSGT00390000011938	ENSGT00940000155311.A.b	ENSGT00390000006956.a	ENSGT00950000183150.b	ENSGT00940000156447.a.a	ENSGT00440000033966	ENSGT00390000016262	ENSGT00940000159871.b.a.a	ENSGT00390000014892
Characoidei	ANCESTRAL SPECIES	70	ENSGT00940000156026.f	ENSGT00950000183015.B.a.a	ENSGT00940000153692.B.a	ENSGT00940000161964.g.b	ENSGT00940000157214.f.a	ENSGT00940000159802	ENSGT00390000014726.c.b	ENSGT00940000157727.x.a	ENSGT00940000158630.h	ENSGT00390000015583	ENSGT00940000155032.l	ENSGT00940000155148.a.b	ENSGT00950000182951.A.b	ENSGT00940000166249	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00390000005672.a.a	ENSGT00940000156584.e.a	ENSGT00940000163871.a.c	ENSGT01100000263525.b.a.p	ENSGT00390000011938	ENSGT00940000155311.A.b	ENSGT00390000006956.a	ENSGT00950000183150.b	ENSGT00940000156447.a.a	ENSGT00440000033966	ENSGT00390000016262	ENSGT00940000159871.b.a.a	ENSGT00390000014892
Mexicana tetra	MODERN SPECIES	19	LRRC18 (ENSAMXG00000033009)	ARHGAP22 (ENSAMXG00000037845)	mapk8b (ENSAMXG00000043643)	ENSAMXG00000042319	ENSAMXG00000029583	gdf10b (ENSAMXG00000037765)	gdf2 (ENSAMXG00000042399)	ENSAMXG00000003145	ubtd1b (ENSAMXG00000003096)	mms19 (ENSAMXG00000003029)	zdhhc16b (ENSAMXG00000002999)	prkar1ab (ENSAMXG00000002988)	fam20a (ENSAMXG00000040382)	ENSAMXG00000032125	LRRC45 (ENSAMXG00000002955)	rac3b (ENSAMXG00000031264) ##22	dcxr (ENSAMXG00000030947)	rfng (ENSAMXG00000037857)	ENSAMXG00000030474	col1a1b (ENSAMXG00000002892)	ENSAMXG00000030307	ENSAMXG00000025014	ENSAMXG00000021385	ENSAMXG00000021381	klhl11 (ENSAMXG00000021378)	ACLY (ENSAMXG00000021373)	ENSAMXG00000021362	ZNF385C (ENSAMXG00000021355)	RAB5C (ENSAMXG00000037267)	ENSAMXG00000034214	plekhm1 (ENSAMXG00000021334)
Electric eel	MODERN SPECIES	86	ENSEEEG00000002834	ENSEEEG00000002837	LRRC18 (ENSEEEG00000002841)	ARHGAP22 (ENSEEEG00000002843)	mapk8b (ENSEEEG00000002902)	gdf10b (ENSEEEG00000003405)	gdf2 (ENSEEEG00000003407)	ENSEEEG00000003411	ubtd1b (ENSEEEG00000003553)	mms19 (ENSEEEG00000003561)	zdhhc16b (ENSEEEG00000003577)	prkar1ab (ENSEEEG00000003592)	fam20a (ENSEEEG00000003760)	ENSEEEG00000003775	LRRC45 (ENSEEEG00000003778)	rac3b (ENSEEEG00000003791) ##22	dcxr (ENSEEEG00000003794)	rfng (ENSEEEG00000003798)	SGCA (ENSEEEG00000003870)	col1a1b (ENSEEEG00000003885)	ENSEEEG00000004046	ENSEEEG00000004071	TMEM101 (ENSEEEG00000004075)	ENSEEEG00000004076	lsm12b (ENSEEEG00000004079)	g6pc3 (ENSEEEG00000004084)	TANC2 (ENSEEEG00000004097)	CNTD1 (ENSEEEG00000004251)	coa3a (ENSEEEG00000004253)	ENSEEEG00000004254	vps25 (ENSEEEG00000004255)
Cyprinoidei	ANCESTRAL SPECIES	29	ENSGT00940000153692.B.a	ENSGT00940000155133.a.a.b	ENSGT00940000161964.g.b	ENSGT00940000157214.f.a	ENSGT00940000159802	ENSGT00390000014726.c.a	ENSGT00390000014726.c.b	ENSGT00940000157727.x.a	ENSGT00940000158630.h	ENSGT00390000015583	ENSGT00940000155032.l	ENSGT00940000155148.a.b	ENSGT00950000182951.A.b	ENSGT00940000166249	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00390000005672.a.a	ENSGT00940000156584.e.a	ENSGT00940000163871.a.c	ENSGT01100000263525.b.a.p	ENSGT00390000011938	ENSGT00940000155311.A.b	ENSGT00390000006956.a.a	ENSGT00950000183150.b	ENSGT00940000156447.a.a	ENSGT00440000033966	ENSGT00390000016262	ENSGT00940000155474.o	ENSGT00390000014892
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	474	ENSGT00940000158269.f.a.d	ENSGT00940000167859.b	ENSGT00730000111333.b.a	ENSGT00390000008566.b.h	ENSGT00940000156026.f.d	ENSGT00950000183015.B.a.a.f.b	ENSGT00940000153692.B.a.g.a	ENSGT00940000157214.f.a.b	ENSGT00940000159802.b	ENSGT00390000014726.c.a	ENSGT00390000014726.c.b.k.b	ENSGT00940000157727.x.a.h	ENSGT00940000158630.h.d.a.b	ENSGT00950000182951.A.b.w	ENSGT00940000166249	ENSGT00940000153500.a.b.e.b.a ##22	ENSGT00940000174909	ENSGT00390000006956.a.a.b	ENSGT00940000156447.a.a.d
Cyprininae_a	ANCESTRAL SPECIES	405	ENSGT00940000158269.f.a.d	ENSGT00940000167859.b	ENSGT00730000111333.b.a	ENSGT00390000008566.b.h	ENSGT00940000156026.f.d	ENSGT00950000183015.B.a.a.f.b	ENSGT00940000153692.B.a.g.a	ENSGT00940000157214.f.a.b	ENSGT00940000159802.b	ENSGT00390000014726.c.a	ENSGT00390000014726.c.b.k.b	ENSGT00940000157727.x.a.h	ENSGT00940000158630.h.d.a.b	ENSGT00950000182951.A.b.w	ENSGT00940000166249	ENSGT00940000153500.a.b.e.b.a ##22	ENSGT00940000174909	ENSGT00390000006956.a.a.b	ENSGT00940000156447.a.a.d
Golden-line barbel	MODERN SPECIES	1634																rac3b (ENSSGRG00000002263) ##22	ENSSGRG00000002406	gngt2b (ENSSGRG00000003208)	ENSSGRG00000003210	lsm12b (ENSSGRG00000003218)	TANC2 (ENSSGRG00000003282)	ENSSGRG00000003289	ENSSGRG00000003299	TAOK2 (ENSSGRG00000003390)	eif3c (ENSSGRG00000004569)	ENSSGRG00000005217	ppp4cb (ENSSGRG00000005219)	zgc:123217 (ENSSGRG00000005220)	aldoab (ENSSGRG00000005224)	ENSSGRG00000005338	ENSSGRG00000005339
Common carp reference	MODERN SPECIES	25	ENSCCRG00000076249	ENSCCRG00000080540	ENSCCRG00000032162	LRRC18 (ENSCCRG00000005716)	ARHGAP22 (ENSCCRG00000020137)	mapk8b (ENSCCRG00000020044)	gdf10b (ENSCCRG00000012033)	gdf2 (ENSCCRG00000023908)	RBP3 (ENSCCRG00000023909)	rbp3 (ENSCCRG00000005534)	ENSCCRG00000005554	ubtd1b (ENSCCRG00000068533)	zdhhc16b (ENSCCRG00000023586)	ENSCCRG00000058466	ENSCCRG00000046929	rac3b (ENSCCRG00000058510) ##22	ENSCCRG00000018053	ENSCCRG00000018026	ENSCCRG00000004308	ENSCCRG00000004395	ENSCCRG00000018946	ENSCCRG00000055747	ENSCCRG00000058688	ENSCCRG00000046140	ENSCCRG00000010727	tbx6 (ENSCCRG00000056611)	zgc:92040 (ENSCCRG00000010725)	eif3c (ENSCCRG00000011155)	zgc:123217 (ENSCCRG00000058182)	aldoab (ENSCCRG00000021052)	ENSCCRG00000028765
Cyprininae	ANCESTRAL SPECIES	5	ENSGT00940000156026.f.c	ENSGT00950000183015.B.a.a.f.a	ENSGT00940000153692.B.a.g.b	ENSGT00940000155133.a.a.b	ENSGT00940000161964.g.b	ENSGT00940000157214.f.a.a	ENSGT00940000159802.a	ENSGT00390000014726.c.b.k.a	ENSGT00940000157727.x.a.g	ENSGT00940000158630.h.d.a.a	ENSGT00390000015583	ENSGT00940000155032.l	ENSGT00940000155148.a.b	ENSGT00950000182951.A.b.x	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00390000005672.a.a	ENSGT00940000156584.e.a.a.a	ENSGT00940000156584.e.a.b	ENSGT00940000163871.a.c	ENSGT01100000263525.b.a.p.a	ENSGT00390000011938.a	ENSGT00940000155311.A.b.a	ENSGT00390000006956.a.a.a	ENSGT00950000183150.b	ENSGT00940000156447.a.a.c	ENSGT00440000033966	ENSGT00390000016262	ENSGT00940000159871.b.a.a.d
Cyprininae_a	ANCESTRAL SPECIES	14	ENSGT00940000156026.f.c	ENSGT00950000183015.B.a.a.f.a	ENSGT00940000153692.B.a.g.b	ENSGT00940000155133.a.a.b	ENSGT00940000161964.g.b	ENSGT00940000157214.f.a.a	ENSGT00940000159802.a	ENSGT00390000014726.c.b.k.a	ENSGT00940000157727.x.a.g	ENSGT00940000158630.h.d.a.a	ENSGT00390000015583	ENSGT00940000155032.l	ENSGT00940000155148.a.b	ENSGT00950000182951.A.b.x	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00390000005672.a.a	ENSGT00940000156584.e.a.a.a	ENSGT00940000156584.e.a.b	ENSGT00940000163871.a.c	ENSGT01100000263525.b.a.p.a	ENSGT00390000011938.a	ENSGT00940000155311.A.b.a	ENSGT00390000006956.a.a.a	ENSGT00950000183150.b	ENSGT00940000156447.a.a.c	ENSGT00440000033966	ENSGT00390000016262	ENSGT00940000159871.b.a.a.d
Common carp reference	MODERN SPECIES	44	mapk8b (ENSCCRG00000005705)	ENSCCRG00000080671	FRMPD2 (ENSCCRG00000073785)	gdf10b (ENSCCRG00000019444)	gdf2 (ENSCCRG00000068999)	rbp3 (ENSCCRG00000023912)	ENSCCRG00000001459	ENSCCRG00000039391	ubtd1b (ENSCCRG00000043895)	mms19 (ENSCCRG00000075921)	zdhhc16b (ENSCCRG00000006535)	prkar1ab (ENSCCRG00000006259)	ENSCCRG00000006014	ENSCCRG00000018190	LRRC45 (ENSCCRG00000018185)	rac3b (ENSCCRG00000018173) ##22	dcxr (ENSCCRG00000073534)	rfng (ENSCCRG00000018040)	ENSCCRG00000018073	col1a1b (ENSCCRG00000061457)	ENSCCRG00000072368	gngt2b (ENSCCRG00000057832)	ENSCCRG00000018028	ENSCCRG00000082856	ENSCCRG00000018024	lsm12b (ENSCCRG00000018019)	g6pc3 (ENSCCRG00000063469)	ENSCCRG00000003193	ENSCCRG00000073735	pagr1 (ENSCCRG00000074237)	ENSCCRG00000064007
Goldfish	MODERN SPECIES	30	mapk8b (ENSCARG00000021549)	ENSCARG00000021446	ENSCARG00000021436	ENSCARG00000021430	gdf10b (ENSCARG00000021424)	gdf2 (ENSCARG00000021419)	ENSCARG00000021381	ubtd1b (ENSCARG00000021370)	mms19 (ENSCARG00000019507)	zdhhc16b (ENSCARG00000019413)	prkar1ab (ENSCARG00000019326)	FAM20A (ENSCARG00000019050)	ENSCARG00000019013	ENSCARG00000019010	LRRC45 (ENSCARG00000018916)	rac3b (ENSCARG00000018883) ##22	dcxr (ENSCARG00000018871)	rfng (ENSCARG00000018842)	ENSCARG00000018835	col1a1b (ENSCARG00000009049)	ENSCARG00000008640	gngt2b (ENSCARG00000008630)	TMEM101 (ENSCARG00000008620)	ENSCARG00000008608	ENSCARG00000008602	g6pc3 (ENSCARG00000008575)	TANC2 (ENSCARG00000008302)	ENSCARG00000008251	coa3a (ENSCARG00000008245)	WNK4 (ENSCARG00000008214)	pagr1 (ENSCARG00000008202)
Zebrafish	MODERN SPECIES	3	ARHGAP22 (ENSDARG00000076434)	mapk8b (ENSDARG00000009870)	FRMPD2 (ENSDARG00000074119)	gdf10b (ENSDARG00000073891)	gdf2 (ENSDARG00000059173)	RBP3 (ENSDARG00000096519)	rbp3 (ENSDARG00000059163)	ENSDARG00000063612	ubtd1b (ENSDARG00000079623)	mms19 (ENSDARG00000079067)	zdhhc16b (ENSDARG00000015989)	prkar1ab (ENSDARG00000101755)	fam20a (ENSDARG00000079486)	ENSDARG00000096532	LRRC45 (ENSDARG00000014005)	rac3b (ENSDARG00000020795) ##22	dcxr (ENSDARG00000079271)	rfng (ENSDARG00000019746)	ENSDARG00000074156	col1a1b (ENSDARG00000035809)	ENSDARG00000099525	gngt2b (ENSDARG00000103543)	tmem101 (ENSDARG00000114508)	lsm12b (ENSDARG00000109510)	g6pc3 (ENSDARG00000020371)	TANC2 (ENSDARG00000107441)	coa3a (ENSDARG00000100585)	ENSDARG00000111945	vps25 (ENSDARG00000059079)	pagr1 (ENSDARG00000076966)	TLCD3B (ENSDARG00000074564)
Clupeiformes	ANCESTRAL SPECIES	338											ENSGT00940000156833.a	ENSGT00940000155148.a.b	ENSGT00950000182951.A.b	ENSGT00940000166249	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000153536.a.b.a.b	ENSGT00940000158181.d	ENSGT00390000018512	ENSGT00940000156193	ENSGT00390000004832	ENSGT00440000033742.a.b.d
Denticle herring	MODERN SPECIES	11	PNMT (ENSDCDG00000019769)	PPP1R1B (ENSDCDG00000019766)	neurod2 (ENSDCDG00000019765)	MED1 (ENSDCDG00000019684)	STAC2 (ENSDCDG00000019673)	ENSDCDG00000019670	RPL19 (ENSDCDG00000019668)	ENSDCDG00000019666	pkmyt1 (ENSDCDG00000019664)	ENSDCDG00000019663	WIPI1 (ENSDCDG00000019648)	prkar1ab (ENSDCDG00000019221)	fam20a (ENSDCDG00000019017)	ENSDCDG00000018994	LRRC45 (ENSDCDG00000018955)	rac3b (ENSDCDG00000018926) ##22	dcxr (ENSDCDG00000018917)	rfng (ENSDCDG00000018602)	ENSDCDG00000018596	rbp4 (ENSDCDG00000018595)	tubgcp2 (ENSDCDG00000018558)	exoc6 (ENSDCDG00000018177)	cyp26a1 (ENSDCDG00000018153)	reep3b (ENSDCDG00000018149)	JMJD1C (ENSDCDG00000017635)	nrbf2b (ENSDCDG00000017564)	egr2b (ENSDCDG00000017557)	adoa (ENSDCDG00000017552)	ENSDCDG00000017548	ENSDCDG00000017523	cabcoco1 (ENSDCDG00000017516)
Atlantic herring	MODERN SPECIES	15	ENSCHAG00000021004	ENSCHAG00000021037	itga3b (ENSCHAG00000021380)	dlx3b (ENSCHAG00000021429)	dlx4b (ENSCHAG00000021459)	ENSCHAG00000021524	kat7b (ENSCHAG00000021539)	ptges3l (ENSCHAG00000022180)	g6pc1a.1 (ENSCHAG00000022186)	g6pc1a.2 (ENSCHAG00000022194)	aarsd1 (ENSCHAG00000022226)	WIPI1 (ENSCHAG00000022532)	prkar1ab (ENSCHAG00000022558)	fam20a (ENSCHAG00000022703)	LRRC45 (ENSCHAG00000022888)	rac3b (ENSCHAG00000022908) ##22	dcxr (ENSCHAG00000022953)	rfng (ENSCHAG00000022977)	GPS1 (ENSCHAG00000023003)	ENSCHAG00000023130	rbp4 (ENSCHAG00000023134)	tubgcp2 (ENSCHAG00000023149)	ENSCHAG00000023187	exoc6 (ENSCHAG00000023220)	CYP26C1 (ENSCHAG00000023737)	cyp26a1 (ENSCHAG00000024185)	reep3b (ENSCHAG00000024206)	ENSCHAG00000024211	JMJD1C (ENSCHAG00000024226)	nrbf2b (ENSCHAG00000024345)	ENSCHAG00000000684
Euteleosteomorpha	ANCESTRAL SPECIES	45	ENSGT00940000160116.a	ENSGT00940000178242	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT00980000198917	ENSGT01030000234951	ENSGT00530000063996.a	ENSGT00940000155575.i.a	ENSGT00940000159093	ENSGT00940000156833.a	ENSGT00940000155148.a.b	ENSGT00950000182951.A.b	ENSGT00940000166249	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00390000018512	ENSGT00940000156193	ENSGT00390000004832	ENSGT00440000033742.a.b.d	ENSGT00390000012364.a	ENSGT00940000153469.a.b	ENSGT00730000111088.b	ENSGT00390000000111.b.a.b	ENSGT00940000155421.a.b	ENSGT01070000253744.a.a.a.b.a.b	ENSGT00940000157276.d
Acanthomorphata	ANCESTRAL SPECIES	131	ENSGT00940000158256.g	ENSGT00950000182849.B.c.b.b	ENSGT00940000158883.b	ENSGT00390000014660	ENSGT00530000063937.a	ENSGT00940000155223.a.b	ENSGT00940000164818.c.a	ENSGT00940000153840.a.a.a.a	ENSGT00940000166206	ENSGT00390000016550	ENSGT00930000151032.B	ENSGT00950000182906.a.a.b	ENSGT00940000160906	ENSGT00950000183187.B	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000158181.a	ENSGT00940000153536.a.b.b.a.b	ENSGT00910000147748	ENSGT00390000018512	ENSGT00940000156193	ENSGT00390000004832	ENSGT00440000033742.a.b.d	ENSGT00940000159138	ENSGT00940000158310	ENSGT00940000160685
Euacanthomorphacea	ANCESTRAL SPECIES	34	ENSGT00940000158256.g	ENSGT00950000182849.B.c.b.b	ENSGT00940000158883.b	ENSGT00390000014660	ENSGT00530000063937.a	ENSGT00940000155223.a.b	ENSGT00940000164818.c.a	ENSGT00940000153840.a.a.a.a	ENSGT00940000166206	ENSGT00390000016550	ENSGT00930000151032.B	ENSGT00950000182906.a.a.b	ENSGT00940000160906	ENSGT00950000183187.B	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT01070000253744.a.a.a.b.a.b	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181.b	ENSGT00940000153536.a.b.b.a.a	ENSGT00940000161333	ENSGT00940000159924.c.a	ENSGT00940000159339.sb.a	ENSGT00390000013948.b	ENSGT00440000039001	ENSGT00940000155109.a.b	ENSGT00940000155309
Percomorphaceae	DUPLICATION
Percomorphaceae	DUPLICATION
Percomorphaceae	ANCESTRAL SPECIES																	ENSGT00940000153500.a.b.e.b.c.a ##22
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00940000153500.a.b.e.b.c.a ##22
Percomorphaceae_C	ANCESTRAL SPECIES																	ENSGT00940000153500.a.b.e.b.c.a ##22
Percomorphaceae_D	ANCESTRAL SPECIES																	ENSGT00940000153500.a.b.e.b.c.a ##22
Carangaria	ANCESTRAL SPECIES																	ENSGT00940000153500.a.b.e.b.c.a ##22
Carangaria_A	ANCESTRAL SPECIES																	ENSGT00940000153500.a.b.e.b.c.a ##22
Barramundi perch	MODERN SPECIES	996																rac3b (ENSLCAG00010023029) ##22	ENSLCAG00010023031
Tiger tail seahorse	MODERN SPECIES	420	ENSHCOG00000017339	ENSHCOG00000000758	mtr (ENSHCOG00000017451)	bms1 (ENSHCOG00000017604)	adoa (ENSHCOG00000017621)	egr2b (ENSHCOG00000017628)	NHLRC3 (ENSHCOG00000017641)	nrbf2b (ENSHCOG00000017649)	reep3b (ENSHCOG00000017687)	JMJD1C (ENSHCOG00000017709)	cyp26a1 (ENSHCOG00000017734)	exoc6 (ENSHCOG00000017796)	ENSHCOG00000017815	trub1 (ENSHCOG00000017877)	LRRC45 (ENSHCOG00000017930)	rac3b (ENSHCOG00000017939) ##22	dcxr (ENSHCOG00000017953)	rfng (ENSHCOG00000018118)	atp6v0a1b (ENSHCOG00000018172)	cavin1b (ENSHCOG00000018193)	stat5b (ENSHCOG00000018669)	ENSHCOG00000018711	ube2d1b (ENSHCOG00000018731)	ipmkb (ENSHCOG00000018748)	NAGLU (ENSHCOG00000018756)	tfam (ENSHCOG00000018795)	ENSHCOG00000018819	CDR2L (ENSHCOG00000018859)	mrpl58 (ENSHCOG00000018870)	DAGLB (ENSHCOG00000018935) #23	ENSHCOG00000018961
Percomorphaceae	ANCESTRAL SPECIES																	ENSGT00940000153500.a.b.e.b.c.b ##22
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00940000153500.a.b.e.b.c.b ##22
Percomorphaceae_C	ANCESTRAL SPECIES																	ENSGT00940000153500.a.b.e.b.c.b ##22
Percomorphaceae_D	ANCESTRAL SPECIES																	ENSGT00940000153500.a.b.e.b.c.b ##22
Carangaria	ANCESTRAL SPECIES																	ENSGT00940000153500.a.b.e.b.c.b ##22
Carangaria_A	ANCESTRAL SPECIES																	ENSGT00940000153500.a.b.e.b.c.b ##22
Barramundi perch	MODERN SPECIES	52															ENSLCAG00010012043	rac3b (ENSLCAG00010012088) ##22	CSNK1D (ENSLCAG00010012213)	slc16a3b (ENSLCAG00010012252)	ENSLCAG00010012262	ccdc57 (ENSLCAG00010012335)	ENSLCAG00010012456
Percomorphaceae	ANCESTRAL SPECIES	69	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153195.B	ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000008657	ENSGT00390000000984	ENSGT00940000158794	ENSGT00940000158210.d	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000161748	ENSGT00940000166815	ENSGT00940000158962	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.d ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00950000182881.a.a.b.i.a	ENSGT00950000182910.b.g.a	ENSGT01080000257420.C.b.b.c.b	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181.b	ENSGT00940000153536.a.b.b.a.a	ENSGT00940000161333	ENSGT00940000159924.c.a	ENSGT00940000159339.sb.a	ENSGT00390000013948.b	ENSGT00440000039001	ENSGT00940000155109.a.b
Percomorphaceae_B	ANCESTRAL SPECIES	4	ENSGT00940000160084.h	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153195.B	ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000008657	ENSGT00390000000984	ENSGT00940000158794	ENSGT00940000158210.d	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000166815	ENSGT00940000158962	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.d ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT01100000263513.a.a.b.a.b.b	ENSGT00950000182881.a.a.b.i.a	ENSGT00950000182910.b.g.a	ENSGT01080000257420.C.b.b.c.b	ENSGT00390000005900	ENSGT00940000155309	ENSGT00940000155109.a.b	ENSGT00440000039001	ENSGT00390000013948.b	ENSGT00940000159339.sb.a	ENSGT00940000159924.c.a	ENSGT00940000161333	ENSGT00940000153536.a.b.b.a.a
Percomorphaceae_C	ANCESTRAL SPECIES	14	ENSGT00940000160084.h	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153195.B	ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000008657	ENSGT00390000000984	ENSGT00940000158794	ENSGT00940000158210.d	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000166815	ENSGT00940000158962	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.d ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT01100000263513.a.a.b.a.b.b	ENSGT00950000182881.a.a.b.i.a	ENSGT00950000182910.b.g.a	ENSGT01080000257420.C.b.b.c.b	ENSGT00390000005900	ENSGT00940000155309	ENSGT00940000155109.a.b.d	ENSGT00440000039001	ENSGT00390000013948.b	ENSGT00940000159339.sb.a	ENSGT00940000159924.c.a	ENSGT00940000161333	ENSGT00940000153536.a.b.b.a.a
Percomorphaceae_D	ANCESTRAL SPECIES	13	ENSGT00940000160084.h	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153195.B	ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000008657	ENSGT00390000000984	ENSGT00940000158794	ENSGT00940000158210.d	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000166815	ENSGT00940000158962	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.d ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00950000182881.a.a.b.i.a	ENSGT00950000182910.b.g.a	ENSGT01080000257420.C.b.b.c.b	ENSGT00390000005900	ENSGT00940000155309	ENSGT00940000155109.a.b.d	ENSGT00440000039001	ENSGT00390000013948.b	ENSGT00940000159339.sb.a	ENSGT00940000159924.c.a	ENSGT00940000161333	ENSGT00940000153536.a.b.b.a.a	ENSGT00940000158181.b
Carangaria	ANCESTRAL SPECIES	13	ENSGT00940000160084.h	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153195.B	ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000008657	ENSGT00390000000984	ENSGT00940000158794	ENSGT00940000158210.d	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000166815	ENSGT00940000158962	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.d ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00950000182881.a.a.b.i.a	ENSGT00950000182910.b.g.a	ENSGT01080000257420.C.b.b.c.b	ENSGT00390000005900	ENSGT00940000155309	ENSGT00940000155109.a.b.d	ENSGT00440000039001	ENSGT00390000013948.b	ENSGT00940000159339.sb.a	ENSGT00940000159924.c.a	ENSGT00940000153536.a.b.b.a.a	ENSGT00940000158181.b	ENSGT00940000153251.b.b
Carangaria_A	ANCESTRAL SPECIES	5	ENSGT00940000160084.h	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153195.B	ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000008657	ENSGT00390000000984	ENSGT00940000158794	ENSGT00940000158210.d	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000166815	ENSGT00940000158962	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.d ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00950000182881.a.a.b.i.a	ENSGT00950000182910.b.g.a	ENSGT01080000257420.C.b.b.c.b	ENSGT00390000005900	ENSGT00940000155309	ENSGT00940000155109.a.b.d	ENSGT00440000039001	ENSGT00390000013948.b	ENSGT00940000159339.sb.a	ENSGT00940000159924.c.a	ENSGT00940000153536.a.b.b.a.a	ENSGT00940000158181.b	ENSGT00940000153251.b.b
Seriola	ANCESTRAL SPECIES	1	ENSGT00940000160084.h	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153195.B	ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000008657	ENSGT00390000000984	ENSGT00940000158794	ENSGT00940000158210.d	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000166815	ENSGT00940000158962	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.d ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00950000182881.a.a.b.i.a	ENSGT00950000182910.b.g.a	ENSGT01080000257420.C.b.b.c.b	ENSGT00390000005900	ENSGT00940000155309	ENSGT00940000155109.a.b.d	ENSGT00440000039001	ENSGT00390000013948.b	ENSGT00940000159339.sb.a.l	ENSGT00940000159924.c.a	ENSGT00940000153536.a.b.b.a.a	ENSGT00940000158181.b	ENSGT00940000153251.b.b
Greater amberjack	MODERN SPECIES	193	ENSSDUG00000017346	ENSSDUG00000017123	mtr (ENSSDUG00000016956)	bms1 (ENSSDUG00000016875)	adoa (ENSSDUG00000016859)	egr2b (ENSSDUG00000016852)	NHLRC3 (ENSSDUG00000016821)	nrbf2b (ENSSDUG00000016806)	reep3b (ENSSDUG00000016781)	JMJD1C (ENSSDUG00000016657)	cyp26a1 (ENSSDUG00000016625)	exoc6 (ENSSDUG00000016476)	ENSSDUG00000016451	trub1 (ENSSDUG00000016414)	LRRC45 (ENSSDUG00000016385)	RAC3 (ENSSDUG00000016362) ##22	dcxr (ENSSDUG00000016314)	rfng (ENSSDUG00000016295)	ENSSDUG00000016287	ENSSDUG00000016274	atp6v0a1b (ENSSDUG00000016211)	cavin1b (ENSSDUG00000016186)	stat5b (ENSSDUG00000016117)	NAGLU (ENSSDUG00000016095)	ENSSDUG00000016074	ipmkb (ENSSDUG00000016061)	ube2d1b (ENSSDUG00000016048)	tfam (ENSSDUG00000016029)	zgc:171971 (ENSSDUG00000016019)	ENPP7 (ENSSDUG00000016004)	ENSSDUG00000015998
Yellowtail amberjack	MODERN SPECIES	2977	ENSSLDG00000014854	mtr (ENSSLDG00000015057)	bms1 (ENSSLDG00000015199)	adoa (ENSSLDG00000015234)	egr2b (ENSSLDG00000015243)	NHLRC3 (ENSSLDG00000015280)	nrbf2b (ENSSLDG00000015298)	reep3b (ENSSLDG00000015317)	ENSSLDG00000015334	JMJD1C (ENSSLDG00000015353)	cyp26a1 (ENSSLDG00000015389)	exoc6 (ENSSLDG00000015421)	ENSSLDG00000015463	trub1 (ENSSLDG00000015486)	LRRC45 (ENSSLDG00000015525)	rac3b (ENSSLDG00000015634) ##22	dcxr (ENSSLDG00000015656)	rfng (ENSSLDG00000015686)	atp6v0a1b (ENSSLDG00000015734)	cavin1b (ENSSLDG00000015817)	stat5b (ENSSLDG00000015840)	NAGLU (ENSSLDG00000015875)	ipmkb (ENSSLDG00000015899)	ube2d1b (ENSSLDG00000015934)	tfam (ENSSLDG00000015949)	zgc:171971 (ENSSLDG00000015968)	ENPP7 (ENSSLDG00000015984)	RBFOX3 (ENSSLDG00000016098)	CSNK1D (ENSSLDG00000016342)	CSNK1D (ENSSLDG00000016364)	slc16a3b (ENSSLDG00000016379)
Pleuronectoidei	ANCESTRAL SPECIES	63	ENSGT00940000160084.h	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153195.B	ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000008657	ENSGT00390000000984	ENSGT00940000158794	ENSGT00940000158210.d	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000166815	ENSGT00940000158962	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.d ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00950000182881.a.a.b.i.a	ENSGT00950000182910.b.g.a	ENSGT01080000257420.C.b.b.c.b	ENSGT00390000005900	ENSGT00940000155309	ENSGT00940000155109.a.b.d	ENSGT00440000039001	ENSGT00390000013948.b	ENSGT00940000159339.sb.a	ENSGT00940000159924.c.a	ENSGT00940000153536.a.b.b.a.a	ENSGT00940000158181.b	ENSGT00940000178264
Turbot	MODERN SPECIES	9	ENSSMAG00000035959	ENSSMAG00000019748	RYR2 (ENSSMAG00000019766)	mtr (ENSSMAG00000019867)	ENSSMAG00000019966	adoa (ENSSMAG00000032814)	ENSSMAG00000019993	ENSSMAG00000028904	nrbf2b (ENSSMAG00000022463)	ENSSMAG00000020001	cyp26a1 (ENSSMAG00000000849)	ENSSMAG00000000925	ENSSMAG00000001014	ENSSMAG00000001020	LRRC45 (ENSSMAG00000001037)	rac3b (ENSSMAG00000001064) ##22	dcxr (ENSSMAG00000001090)	rfng (ENSSMAG00000001119)	ATP6V0A1 (ENSSMAG00000001144)	CAVIN1 (ENSSMAG00000001236)	ENSSMAG00000001250	ENSSMAG00000001363	IPMK (ENSSMAG00000001386)	ENSSMAG00000033236	tfam (ENSSMAG00000001444)	ENSSMAG00000001465	ENSSMAG00000018773	ENSSMAG00000001532	ENSSMAG00000001602	nme2a (ENSSMAG00000021679)	ENSSMAG00000001659
Tongue sole	MODERN SPECIES	18	ENSCSEG00000011568	metrn (ENSCSEG00000011559)	stub1 (ENSCSEG00000011556)	FMNL1 (ENSCSEG00000011523)	adoa (ENSCSEG00000011520)	egr2b (ENSCSEG00000011507)	NHLRC3 (ENSCSEG00000011500)	nrbf2b (ENSCSEG00000011488)	reep3b (ENSCSEG00000011467)	JMJD1C (ENSCSEG00000011439)	cyp26a1 (ENSCSEG00000011422)	exoc6 (ENSCSEG00000011295)	ENSCSEG00000011280	trub1 (ENSCSEG00000011261)	LRRC45 (ENSCSEG00000011242)	rac3b (ENSCSEG00000011227) ##22	dcxr (ENSCSEG00000011201)	rfng (ENSCSEG00000011170)	atp6v0a1b (ENSCSEG00000011086)	cavin1b (ENSCSEG00000011066)	stat5b (ENSCSEG00000011035)	NAGLU (ENSCSEG00000011019)	plxdc1 (ENSCSEG00000011008)	ENSCSEG00000010993	tectb (ENSCSEG00000010982)	ENSCSEG00000010941	acsl5 (ENSCSEG00000010896)	ANK3 (ENSCSEG00000010862)	ipmkb (ENSCSEG00000010850)	hpdl (ENSCSEG00000010846)	ZRANB1 (ENSCSEG00000010830)
Anabantaria	ANCESTRAL SPECIES	29	ENSGT00940000160084.h	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153195.B	ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000008657	ENSGT00390000000984	ENSGT00940000158794	ENSGT00940000158210.d	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000166815	ENSGT00940000158962	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.d ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00950000182881.a.a.b.i.a	ENSGT00950000182910.b.g.a	ENSGT01080000257420.C.b.b.c.b	ENSGT00390000005900	ENSGT00940000155309	ENSGT00940000155109.a.b.d	ENSGT00440000039001	ENSGT00390000013948.b	ENSGT00910000147748	ENSGT00940000153536.a.b.b.a.a	ENSGT00940000158181.b	ENSGT00940000153251.b.b	ENSGT00940000157276.d
Zig-zag eel	MODERN SPECIES	10	CAVIN1 (ENSMAMG00000026742)	ATP6V0A1 (ENSMAMG00000020672)	ENSMAMG00000020688	ENSMAMG00000020695	ENSMAMG00000020702	ENSMAMG00000020707	ENSMAMG00000020719	ENSMAMG00000020728	ENSMAMG00000020744	ENSMAMG00000020776	ENSMAMG00000020785	ENSMAMG00000020817	ENSMAMG00000024832	ENSMAMG00000020825	ENSMAMG00000026929	ENSMAMG00000020838 ##22	nrbf2b (ENSMAMG00000027309)	NHLRC3 (ENSMAMG00000026691)	egr2b (ENSMAMG00000020850)	adoa (ENSMAMG00000020853)	ENSMAMG00000020855	mtr (ENSMAMG00000020873)	ENSMAMG00000027153	ENSMAMG00000020930	ENSMAMG00000021006	ENSMAMG00000021035	ENSMAMG00000021051	ENSMAMG00000021053	ENSMAMG00000021063	acbd4 (ENSMAMG00000026759)	ENSMAMG00000021112
Anabantoidei	ANCESTRAL SPECIES	10	ENSGT00940000160084.h	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153195.B	ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000008657	ENSGT00390000000984	ENSGT00940000158794	ENSGT00940000158210.d	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000166815	ENSGT00940000158962	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.d ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00950000182881.a.a.b.i.a	ENSGT00950000182910.b.g.a	ENSGT01080000257420.C.b.b.c.b	ENSGT00390000005900	ENSGT00940000155309	ENSGT00940000155109.a.b.d	ENSGT00440000039001	ENSGT00390000013948.b	ENSGT00910000147748	ENSGT00940000153536.a.b.b.a.a	ENSGT00940000158181.b	ENSGT00940000178264	ENSGT00940000153251.b.b
Siamese fighting fish	MODERN SPECIES	9	CHRM3 (ENSBSLG00000013098)	ENSBSLG00000010526	bms1 (ENSBSLG00000010293)	bms1 (ENSBSLG00000009799)	adoa (ENSBSLG00000009742)	egr2b (ENSBSLG00000009701)	NHLRC3 (ENSBSLG00000009391)	nrbf2b (ENSBSLG00000009386)	reep3b (ENSBSLG00000009370)	JMJD1C (ENSBSLG00000009002)	cyp26a1 (ENSBSLG00000008635)	exoc6 (ENSBSLG00000008022)	ENSBSLG00000007980	trub1 (ENSBSLG00000007947)	LRRC45 (ENSBSLG00000007853)	rac3b (ENSBSLG00000007768) ##22	dcxr (ENSBSLG00000007553)	dcxr (ENSBSLG00000007545)	rfng (ENSBSLG00000007525)	atp6v0a1b (ENSBSLG00000007356)	cavin1b (ENSBSLG00000007343)	stat5b (ENSBSLG00000007286)	NAGLU (ENSBSLG00000007278)	ipmkb (ENSBSLG00000007275)	ube2d1b (ENSBSLG00000007230)	ENSBSLG00000007220	ube2d1b (ENSBSLG00000007213)	ENSBSLG00000007191	ENSBSLG00000007125	ENSBSLG00000007106	tfam (ENSBSLG00000007094)
Climbing perch	MODERN SPECIES	10	ENSATEG00000023507	mtr (ENSATEG00000023478)	ENSATEG00000023465	adoa (ENSATEG00000023463)	adoa (ENSATEG00000023448)	egr2b (ENSATEG00000023443)	ENSATEG00000023435	nrbf2b (ENSATEG00000029020)	ENSATEG00000023423	ENSATEG00000023395	ENSATEG00000023367	ENSATEG00000023322	ENSATEG00000023294	ENSATEG00000023291	LRRC45 (ENSATEG00000023264)	rac3b (ENSATEG00000027663) ##22	dcxr (ENSATEG00000023231)	rfng (ENSATEG00000023225)	ATP6V0A1 (ENSATEG00000023212)	CAVIN1 (ENSATEG00000026607)	ENSATEG00000023186	ENSATEG00000023162	ENSATEG00000025386	IPMK (ENSATEG00000026431)	UBE2D1 (ENSATEG00000023138)	tfam (ENSATEG00000023131)	ENSATEG00000023125	ENSATEG00000023118	ENSATEG00000023112	ENSATEG00000023101	ENSATEG00000026346
Eupercaria	ANCESTRAL SPECIES	10	ENSGT00940000160084.h	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153195.B	ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000008657	ENSGT00390000000984	ENSGT00940000158794	ENSGT00940000158210.d	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000166815	ENSGT00940000158962	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.d ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT01100000263513.a.a.b.a.b.b	ENSGT00950000182881.a.a.b.i.a	ENSGT00950000182910.b.g.a	ENSGT01080000257420.C.b.b.c.b	ENSGT00390000005900	ENSGT00940000155309	ENSGT00940000155109.a.b.d	ENSGT00440000039001	ENSGT00390000013948.b	ENSGT00940000159339.sb.a	ENSGT00940000159924.c.a	ENSGT00940000161333	ENSGT00940000153536.a.b.b.a.a
Tetraodontidae	ANCESTRAL SPECIES	139																ENSGT00940000153500.a.b.e.b.d ##22	ENSGT00940000154873	ENSGT00940000158962	ENSGT00940000166815	ENSGT00390000005739.a.b	ENSGT00800000124060.B	ENSGT00940000158210.d	ENSGT00940000158794	ENSGT00390000000984	ENSGT00390000008657	ENSGT00940000158394.e	ENSGT00390000014082.a.b
Fugu	MODERN SPECIES		ENSTRUG00000030599	ENSTRUG00000027871	NAGLU (ENSTRUG00000003631)	ipmkb (ENSTRUG00000022780)	mct4b (ENSTRUG00000004141)	ccdc57 (ENSTRUG00000004461)	rab3gap1 (ENSTRUG00000005671)	METTL9 (ENSTRUG00000006220)	kdelr2b (ENSTRUG00000021887) #24	ENSTRUG00000026133	ENSTRUG00000030082	cavin1b (ENSTRUG00000006017)	atp6v0a1b (ENSTRUG00000005146)	ENSTRUG00000028515	rfng (ENSTRUG00000004572)	rac3b (ENSTRUG00000004543) ##22	dcxr (ENSTRUG00000019922)	ENSTRUG00000028794	trub1 (ENSTRUG00000032339)	hhex (ENSTRUG00000030916)	exoc6 (ENSTRUG00000002576)	ENSTRUG00000032452	ENSTRUG00000028447	cyp26a1 (ENSTRUG00000002005)	JMJD1C (ENSTRUG00000028386)	ENSTRUG00000028638	reep3b (ENSTRUG00000000574)	nrbf2b (ENSTRUG00000000608)	NHLRC3 (ENSTRUG00000033318)	egr2b (ENSTRUG00000000657)	adoa (ENSTRUG00000027339)
Eupecaria_A	ANCESTRAL SPECIES	1	ENSGT00940000160084.h	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153195.B	ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000008657	ENSGT00390000000984	ENSGT00940000158794	ENSGT00940000158210.d	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000166815	ENSGT00940000158962	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.d ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT01100000263513.a.a.b.a.b.b	ENSGT00950000182881.a.a.b.i.a	ENSGT00950000182910.b.g.a	ENSGT01080000257420.C.b.b.c.b	ENSGT01100000263515.a.b.a.b.b.k.b.a.a	ENSGT00390000005900	ENSGT00940000155309	ENSGT00940000155109.a.b.d	ENSGT00440000039001	ENSGT00390000013948.b	ENSGT00940000159339.sb.a	ENSGT00940000159924.c.a	ENSGT00940000161333
Ballan wrasse	MODERN SPECIES	393																rac3b (ENSLBEG00000009001) ##22	dcxr (ENSLBEG00000009052)	rfng (ENSLBEG00000009115)	atp6v0a1b (ENSLBEG00000009168)	cavin1b (ENSLBEG00000009319)	stat5b (ENSLBEG00000009363)	ENSLBEG00000009418	NAGLU (ENSLBEG00000009426)	ipmkb (ENSLBEG00000009446)	ube2d1b (ENSLBEG00000009470)	tfam (ENSLBEG00000009502)	zgc:171971 (ENSLBEG00000009545)	ENPP7 (ENSLBEG00000009631)	ENPP7 (ENSLBEG00000009654)	ENSLBEG00000009671
Eupecaria_B	ANCESTRAL SPECIES	3	ENSGT00940000160084.h	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153195.B	ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000008657	ENSGT00390000000984	ENSGT00940000158794	ENSGT00940000158210.d	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000166815	ENSGT00940000158962	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.d ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT01100000263513.a.a.b.a.b.b	ENSGT00950000182881.a.a.b.i.a	ENSGT00950000182910.b.g.a	ENSGT01080000257420.C.b.b.c.b	ENSGT01100000263515.a.b.a.b.b.k.b.a.a	ENSGT00390000005900	ENSGT00940000155309	ENSGT00940000155109.a.b.d	ENSGT00440000039001	ENSGT00390000013948.b	ENSGT00940000159339.sb.a	ENSGT00940000159924.c.a	ENSGT00940000153536.a.b.b.a.a
Eupecaria_C	ANCESTRAL SPECIES	1	ENSGT00940000160084.h	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153195.B	ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000008657	ENSGT00390000000984	ENSGT00940000158794	ENSGT00940000158210.d	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000166815	ENSGT00940000158962	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.d ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT01100000263513.a.a.b.a.b.b	ENSGT00950000182881.a.a.b.i.a	ENSGT00950000182910.b.g.a	ENSGT01080000257420.C.b.b.c.b	ENSGT01100000263515.a.b.a.b.b.k.b.a.a	ENSGT00390000005900	ENSGT00940000155309	ENSGT00940000155109.a.b.d	ENSGT00440000039001	ENSGT00390000013948.b	ENSGT00940000159339.sb.a	ENSGT00940000159924.c.a	ENSGT00940000161333
Gilthead seabream	MODERN SPECIES	12	egr2b (ENSSAUG00010008884)	ENSSAUG00010008885	ENSSAUG00010008886	NHLRC3 (ENSSAUG00010008888)	nrbf2b (ENSSAUG00010008890)	reep3b (ENSSAUG00010008895)	JMJD1C (ENSSAUG00010008898)	ENSSAUG00010008914	cyp26a1 (ENSSAUG00010008917)	exoc6 (ENSSAUG00010008930)	ENSSAUG00010008942	ENSSAUG00010008943	ENSSAUG00010008944	trub1 (ENSSAUG00010008947)	LRRC45 (ENSSAUG00010008969)	rac3b (ENSSAUG00010009420) ##22	dcxr (ENSSAUG00010009425)	rfng (ENSSAUG00010009428)	atp6v0a1b (ENSSAUG00010009430)	cavin1b (ENSSAUG00010009474)	stat5b (ENSSAUG00010009480)	ENSSAUG00010009488	ENSSAUG00010009489	ENSSAUG00010009491	NAGLU (ENSSAUG00010009494)	ipmkb (ENSSAUG00010009498)	ube2d1b (ENSSAUG00010009506)	tfam (ENSSAUG00010009521)	ENSSAUG00010009525	enpp7.2 (ENSSAUG00010009528)	ENSSAUG00010009541
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	1	ENSGT00940000160084.h	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153195.B	ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000008657	ENSGT00390000000984	ENSGT00940000158794	ENSGT00940000158210.d	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000166815	ENSGT00940000158962	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.d ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT01100000263513.a.a.b.a.b.b	ENSGT00950000182881.a.a.b.i.a	ENSGT00950000182910.b.g.a	ENSGT01080000257420.C.b.b.c.b	ENSGT01100000263515.a.b.a.b.b.k.b.a.a	ENSGT00390000005900	ENSGT00940000155309	ENSGT00940000155109.a.b.d	ENSGT00440000039001	ENSGT00390000013948.b	ENSGT00940000159339.sb.a	ENSGT00940000159924.c.a	ENSGT00940000161333
European seabass	MODERN SPECIES	11	ENSDLAG00005031660	ENSDLAG00005028120	mtr (ENSDLAG00005016745)	ENSDLAG00005016167	adoa (ENSDLAG00005016144)	ENSDLAG00005016134	ENSDLAG00005027389	nrbf2b (ENSDLAG00005033037)	ENSDLAG00005016079	ENSDLAG00005033975	ENSDLAG00005029514	ENSDLAG00005018236	ENSDLAG00005027120	ENSDLAG00005030429	LRRC45 (ENSDLAG00005020148)	rac3b (ENSDLAG00005034099) ##22	dcxr (ENSDLAG00005019789)	rfng (ENSDLAG00005019825)	ENSDLAG00005019879	ATP6V0A1 (ENSDLAG00005019950)	CAVIN1 (ENSDLAG00005004886)	ENSDLAG00005021137	ENSDLAG00005021145	ENSDLAG00005021149	IPMK (ENSDLAG00005033893)	UBE2D1 (ENSDLAG00005021161)	tfam (ENSDLAG00005030023)	ENSDLAG00005030378	ENSDLAG00005021251	ENSDLAG00005003959	RBFOX3 (ENSDLAG00005028078)
Large yellow croaker	MODERN SPECIES	488	ENSLCRG00005020046	mtr (ENSLCRG00005018908)	bms1 (ENSLCRG00005018835)	adoa (ENSLCRG00005018830)	egr2b (ENSLCRG00005018829)	NHLRC3 (ENSLCRG00005018827)	nrbf2b (ENSLCRG00005018824)	reep3b (ENSLCRG00005018820)	JMJD1C (ENSLCRG00005018808)	cyp26a1 (ENSLCRG00005018802)	exoc6 (ENSLCRG00005018757)	ENSLCRG00005018747	trub1 (ENSLCRG00005018743)	ENSLCRG00005018740	LRRC45 (ENSLCRG00005018495)	rac3b (ENSLCRG00005018457) ##22	dcxr (ENSLCRG00005018456)	rfng (ENSLCRG00005018454)	atp6v0a1b (ENSLCRG00005018258)	cavin1b (ENSLCRG00005018253)	stat5b (ENSLCRG00005018181)	ENSLCRG00005018180	ENSLCRG00005018178	NAGLU (ENSLCRG00005018177)	ipmkb (ENSLCRG00005018174)	ube2d1b (ENSLCRG00005017985)	tfam (ENSLCRG00005017984)	zgc:171971 (ENSLCRG00005017983)	ENPP7 (ENSLCRG00005017981)	ENPP7 (ENSLCRG00005017980)	ENSLCRG00005017978
Perciformes	ANCESTRAL SPECIES	9	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153195.B	ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000008657	ENSGT00390000000984	ENSGT00940000158794	ENSGT00940000158210.d	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000161748	ENSGT00940000166815	ENSGT00940000158962	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.d ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00950000182881.a.a.b.i.a	ENSGT00950000182910.b.g.a	ENSGT01080000257420.C.b.b.c.b	ENSGT00390000005900	ENSGT00940000155309	ENSGT00940000155109.a.b.d	ENSGT00440000039001	ENSGT00390000013948.b	ENSGT00940000159339.sb.a	ENSGT00940000159924.c.a	ENSGT00940000153536.a.b.b.a.a	ENSGT00940000158181.b	ENSGT00940000153251.b.b
Cottioidei	ANCESTRAL SPECIES	38	ENSGT00940000160084.h	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153195.B	ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000008657	ENSGT00390000000984	ENSGT00940000158794	ENSGT00940000158210.d	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000166815	ENSGT00940000158962	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.d ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00950000182881.a.a.b.i.a	ENSGT00950000182910.b.g.a	ENSGT01080000257420.C.b.b.c.b	ENSGT00390000005900	ENSGT00940000155309	ENSGT00940000155109.a.b.d	ENSGT00440000039001	ENSGT00390000013948.b	ENSGT00940000159339.sb.a	ENSGT00940000159924.c.a	ENSGT00940000153536.a.b.b.a.a	ENSGT00940000158181.b	ENSGT00940000153251.b.b
Lumpfish	MODERN SPECIES	10	CHRM3 (ENSCLMG00005021347)	ENSCLMG00005021346	ENSCLMG00005020434	mtr (ENSCLMG00005018703)	bms1 (ENSCLMG00005018608)	adoa (ENSCLMG00005018604)	egr2b (ENSCLMG00005018603)	NHLRC3 (ENSCLMG00005018602)	nrbf2b (ENSCLMG00005018601)	reep3b (ENSCLMG00005018600)	JMJD1C (ENSCLMG00005018598)	cyp26a1 (ENSCLMG00005018597)	exoc6 (ENSCLMG00005017418)	ENSCLMG00005017393	LRRC45 (ENSCLMG00005017381)	rac3b (ENSCLMG00005017378) ##22	dcxr (ENSCLMG00005017376)	rfng (ENSCLMG00005017185)	atp6v0a1b (ENSCLMG00005017161)	cavin1b (ENSCLMG00005017156)	ENSCLMG00005017037	NAGLU (ENSCLMG00005017033)	ipmkb (ENSCLMG00005017032)	ube2d1b (ENSCLMG00005016817)	tfam (ENSCLMG00005016814)	zgc:171971 (ENSCLMG00005016812)	enpp7.2 (ENSCLMG00005016810)	RBFOX3 (ENSCLMG00005016806)	CSNK1D (ENSCLMG00005016782)	slc16a3b (ENSCLMG00005016761)	ENSCLMG00005016756
Stickleback	MODERN SPECIES	425	CHRM3 (ENSGACG00000015318)	ENSGACG00000015320	mtr (ENSGACG00000015329)	bms1 (ENSGACG00000015334)	adoa (ENSGACG00000015340)	egr2b (ENSGACG00000015342)	NHLRC3 (ENSGACG00000015343)	nrbf2b (ENSGACG00000015347)	reep3b (ENSGACG00000015360)	JMJD1C (ENSGACG00000015362)	cyp26a1 (ENSGACG00000015370)	exoc6 (ENSGACG00000015379)	ENSGACG00000015385	trub1 (ENSGACG00000015387)	LRRC45 (ENSGACG00000015389)	rac3b (ENSGACG00000015393) ##22	dcxr (ENSGACG00000015394)	rfng (ENSGACG00000015395)	ENSGACG00000015400	atp6v0a1b (ENSGACG00000015401)	cavin1b (ENSGACG00000015404)	stat5b (ENSGACG00000015405)	NAGLU (ENSGACG00000015408)	ipmkb (ENSGACG00000015412)	ENSGACG00000015413	tfam (ENSGACG00000015427)	ENSGACG00000015436
Perciformes_a	ANCESTRAL SPECIES	8	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153195.B	ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000008657	ENSGT00390000000984	ENSGT00940000158794	ENSGT00940000158210.d	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000161748	ENSGT00940000166815	ENSGT00940000158962	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.d ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00950000182881.a.a.b.i.a	ENSGT00950000182910.b.g.a	ENSGT01080000257420.C.b.b.c.b	ENSGT00390000005900	ENSGT00940000155309	ENSGT00940000155109.a.b.d	ENSGT00440000039001	ENSGT00390000013948.b	ENSGT00940000159339.sb.a	ENSGT00940000159924.c.a	ENSGT00940000153536.a.b.b.a.a	ENSGT00940000158181.b	ENSGT00940000153251.b.b
Pike perch	MODERN SPECIES	43	CHRM3 (ENSSLUG00000023546)	ENSSLUG00000023168	mtr (ENSSLUG00000022131)	bms1 (ENSSLUG00000021936)	adoa (ENSSLUG00000021918)	egr2b (ENSSLUG00000021913)	NHLRC3 (ENSSLUG00000021909)	nrbf2b (ENSSLUG00000021906)	reep3b (ENSSLUG00000021903)	JMJD1C (ENSSLUG00000021886)	cyp26a1 (ENSSLUG00000021874)	exoc6 (ENSSLUG00000021790)	HHEX (ENSSLUG00000021775)	trub1 (ENSSLUG00000021767)	LRRC45 (ENSSLUG00000021721)	rac3b (ENSSLUG00000021687) ##22	dcxr (ENSSLUG00000021678)	rfng (ENSSLUG00000021633)	atp6v0a1b (ENSSLUG00000021450)	cavin1b (ENSSLUG00000021427)	stat5b (ENSSLUG00000021190)	NAGLU (ENSSLUG00000021142)	ipmkb (ENSSLUG00000021134)	ube2d1b (ENSSLUG00000021028)	tfam (ENSSLUG00000021018)	zgc:171971 (ENSSLUG00000021015)	ENPP7 (ENSSLUG00000021012)	ENSSLUG00000021009
Channel bull blenny	MODERN SPECIES	10	ENSCGOG00000014802	ENSCGOG00000014806	CHRM3 (ENSCGOG00000014811)	ENSCGOG00000014874	mtr (ENSCGOG00000015892)	bms1 (ENSCGOG00000017455)	ADO (ENSCGOG00000017847)	egr2b (ENSCGOG00000017850)	reep3b (ENSCGOG00000017853)	JMJD1C (ENSCGOG00000017862)	cyp26a1 (ENSCGOG00000017922)	exoc6 (ENSCGOG00000017997)	ENSCGOG00000018966	trub1 (ENSCGOG00000018968)	LRRC45 (ENSCGOG00000018986)	rac3b (ENSCGOG00000019178) ##22	dcxr (ENSCGOG00000019364)	rfng (ENSCGOG00000019372)	atp6v0a1b (ENSCGOG00000019561)	cavin1b (ENSCGOG00000021413)	stat5b (ENSCGOG00000021474)	NAGLU (ENSCGOG00000023237)	ipmkb (ENSCGOG00000023240)	ube2d1b (ENSCGOG00000023241)	tfam (ENSCGOG00000023245)	zgc:171971 (ENSCGOG00000023249)	ENPP7 (ENSCGOG00000023251)	ENPP7 (ENSCGOG00000023252)	ENSCGOG00000023256	ENSCGOG00000023257	ENSCGOG00000011947
Ovalentaria	ANCESTRAL SPECIES	13	ENSGT00940000160084.h	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153195.B	ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000008657	ENSGT00390000000984	ENSGT00940000158794	ENSGT00940000158210.d	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000166815	ENSGT00940000158962	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.d ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT01100000263513.a.a.b.a.b.b	ENSGT00950000182881.a.a.b.i.a	ENSGT00950000182910.b.g.a	ENSGT01080000257420.C.b.b.c.b	ENSGT00390000005900	ENSGT00940000155309	ENSGT00940000155109.a.b	ENSGT00440000039001	ENSGT00390000013948.b	ENSGT00940000159339.sb.a	ENSGT00940000159924.c.a	ENSGT00940000153536.a.b.b.a.a	ENSGT00940000158181.b
Ovalentaria_B	ANCESTRAL SPECIES	28	ENSGT00940000160084.h	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153195.B	ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000008657	ENSGT00390000000984	ENSGT00940000158794	ENSGT00940000158210.d	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000166815	ENSGT00940000158962	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.d ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT01100000263513.a.a.b.a.b.b	ENSGT00950000182881.a.a.b.i.a	ENSGT00950000182910.b.g.a	ENSGT01080000257420.C.b.b.c.b	ENSGT00390000005900	ENSGT00940000155309	ENSGT00940000155109.a.b	ENSGT00440000039001	ENSGT00390000013948.b	ENSGT00940000159339.sb.a	ENSGT00940000159924.c.a	ENSGT00940000153536.a.b.b.a.a	ENSGT00910000147748
Cichlidae	ANCESTRAL SPECIES	28	ENSGT00940000160084.h	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153195.B	ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000008657	ENSGT00390000000984	ENSGT00940000158794	ENSGT00940000158210.d	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000166815	ENSGT00940000158962	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.d ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT01100000263513.a.a.b.a.b.b	ENSGT00950000182881.a.a.b.i.a	ENSGT00950000182910.b.g.a	ENSGT01080000257420.C.b.b.c.b	ENSGT00390000005900	ENSGT00940000155309	ENSGT00940000155109.a.b	ENSGT00440000039001	ENSGT00390000013948.b	ENSGT00940000159339.sb.a	ENSGT00940000159924.c.a	ENSGT00940000153536.a.b.b.a.a	ENSGT00910000147748
Pseudocrenilabrinae	ANCESTRAL SPECIES	9	ENSGT00940000160084.h	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153195.B	ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000008657	ENSGT00390000000984	ENSGT00940000158794	ENSGT00940000158210.d	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000166815	ENSGT00940000158962	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.d ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT01100000263513.a.a.b.a.b.b	ENSGT00950000182881.a.a.b.i.a	ENSGT00950000182910.b.g.a	ENSGT01080000257420.C.b.b.c.b	ENSGT00390000005900	ENSGT00940000155309	ENSGT00940000155109.a.b	ENSGT00440000039001	ENSGT00390000013948.b	ENSGT00940000159339.sb.a	ENSGT00940000159924.c.a	ENSGT00940000153536.a.b.b.a.a	ENSGT00940000158181.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	7	ENSGT00940000160084.h	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153195.B	ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000008657	ENSGT00390000000984	ENSGT00940000158794	ENSGT00940000158210.d	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000166815	ENSGT00940000158962	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.d ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT01100000263513.a.a.b.a.b.b	ENSGT00950000182881.a.a.b.i.a	ENSGT00950000182910.b.g.a	ENSGT01080000257420.C.b.b.c.b	ENSGT00390000005900	ENSGT00940000155309	ENSGT00940000155109.a.b	ENSGT00440000039001	ENSGT00390000013948.b	ENSGT00940000159339.sb.a	ENSGT00940000159924.c.a	ENSGT00940000153536.a.b.b.a.a	ENSGT00940000158181.b
Haplochromini	ANCESTRAL SPECIES	22	ENSGT00940000160084.h	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153195.B	ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000008657	ENSGT00390000000984	ENSGT00940000158794	ENSGT00940000158210.d	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000166815	ENSGT00940000158962	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.d ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT01100000263513.a.a.b.a.b.b	ENSGT00950000182881.a.a.b.i.a	ENSGT00950000182910.b.g.a	ENSGT01080000257420.C.b.b.c.b	ENSGT00390000005900	ENSGT00940000155309	ENSGT00940000155109.a.b	ENSGT00440000039001	ENSGT00390000013948.b	ENSGT00940000159339.sb.a	ENSGT00940000159924.c.a	ENSGT00940000153536.a.b.b.a.a	ENSGT00940000158181.b
Burton s mouthbrooder	MODERN SPECIES	988												ENSHBUG00000016769	ENSHBUG00000016779	trub1 (ENSHBUG00000016787)	LRRC45 (ENSHBUG00000016819)	rac3b (ENSHBUG00000016848) ##22	dcxr (ENSHBUG00000016902)	rfng (ENSHBUG00000016933)	ENSHBUG00000016976	atp6v0a1b (ENSHBUG00000017072)	cavin1b (ENSHBUG00000017105)
Haplochromini_A	ANCESTRAL SPECIES	24	ENSGT00940000160084.h	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153195.B	ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000008657	ENSGT00390000000984	ENSGT00940000158794	ENSGT00940000158210.d	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000166815	ENSGT00940000158962	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.d ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT01100000263513.a.a.b.a.b.b	ENSGT00950000182881.a.a.b.i.a	ENSGT00950000182910.b.g.a	ENSGT01080000257420.C.b.b.c.b	ENSGT00390000005900	ENSGT00940000155309	ENSGT00940000155109.a.b	ENSGT00440000039001	ENSGT00390000013948.b	ENSGT00940000159339.sb.a	ENSGT00940000159924.c.a	ENSGT00940000153536.a.b.b.a.a	ENSGT00940000158181.b
P. nyererei	MODERN SPECIES	523		ENSPNYG00000019044	mtr (ENSPNYG00000018947)	bms1 (ENSPNYG00000018866)	adoa (ENSPNYG00000018852)	egr2b (ENSPNYG00000018841)	NHLRC3 (ENSPNYG00000018823)	nrbf2b (ENSPNYG00000018800)	reep3b (ENSPNYG00000018771)	ENSPNYG00000018719	cyp26a1 (ENSPNYG00000018696)	exoc6 (ENSPNYG00000018646)	ENSPNYG00000018631	trub1 (ENSPNYG00000018614)	LRRC45 (ENSPNYG00000018544)	rac3b (ENSPNYG00000018515) ##22	dcxr (ENSPNYG00000018493)	rfng (ENSPNYG00000018454)	ENSPNYG00000018428	atp6v0a1b (ENSPNYG00000018377)	cavin1b (ENSPNYG00000018354)
Haplochromini_B	ANCESTRAL SPECIES	24	ENSGT00940000160084.h	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153195.B	ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000008657	ENSGT00390000000984	ENSGT00940000158794	ENSGT00940000158210.d	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000166815	ENSGT00940000158962	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.d ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT01100000263513.a.a.b.a.b.b	ENSGT00950000182881.a.a.b.i.a	ENSGT00950000182910.b.g.a	ENSGT01080000257420.C.b.b.c.b	ENSGT00390000005900	ENSGT00940000155309	ENSGT00940000155109.a.b	ENSGT00440000039001	ENSGT00390000013948.b	ENSGT00940000159339.sb.a	ENSGT00940000180048	ENSGT00940000159924.c.a	ENSGT00940000153536.a.b.b.a.a
Zebra mbuna	MODERN SPECIES	169											exoc6 (ENSMZEG00005024101)	ENSMZEG00005024099	ENSMZEG00005024096	trub1 (ENSMZEG00005024095)	LRRC45 (ENSMZEG00005024092)	rac3b (ENSMZEG00005024089) ##22	dcxr (ENSMZEG00005024084)	rfng (ENSMZEG00005024081)	ENSMZEG00005024077	atp6v0a1b (ENSMZEG00005024070)	cavin1b (ENSMZEG00005024065)
Eastern happy	MODERN SPECIES	20	ENSACLG00000001624	mtr (ENSACLG00000001421)	ENSACLG00000001405	bms1 (ENSACLG00000001294)	adoa (ENSACLG00000001219)	egr2b (ENSACLG00000001210)	NHLRC3 (ENSACLG00000001193)	nrbf2b (ENSACLG00000001185)	reep3b (ENSACLG00000001113)	JMJD1C (ENSACLG00000001033)	cyp26a1 (ENSACLG00000000905)	exoc6 (ENSACLG00000000855)	ENSACLG00000000844	trub1 (ENSACLG00000000823)	LRRC45 (ENSACLG00000000796)	rac3b (ENSACLG00000000778) ##22	dcxr (ENSACLG00000000751)	rfng (ENSACLG00000000742)	atp6v0a1b (ENSACLG00000000601)	cavin1b (ENSACLG00000000576)	ENSACLG00000000558	stat5b (ENSACLG00000000448)	NAGLU (ENSACLG00000000400)	ipmkb (ENSACLG00000000248)	ube2d1b (ENSACLG00000000226)	tfam (ENSACLG00000000080)	ENSACLG00000000074	enpp7.2 (ENSACLG00000000056)	ENSACLG00000000043	ENSACLG00000025600	ENSACLG00000025597
Lyretail cichlid	MODERN SPECIES	371	ENSNBRG00000023663	mtr (ENSNBRG00000023647)	bms1 (ENSNBRG00000023636)	bms1 (ENSNBRG00000023627)	adoa (ENSNBRG00000023623)	egr2b (ENSNBRG00000023621)	NHLRC3 (ENSNBRG00000023615)	nrbf2b (ENSNBRG00000023607)	reep3b (ENSNBRG00000023599)	ENSNBRG00000023588	cyp26a1 (ENSNBRG00000023492)	exoc6 (ENSNBRG00000023425)	ENSNBRG00000023419	trub1 (ENSNBRG00000023393)	LRRC45 (ENSNBRG00000023351)	rac3b (ENSNBRG00000023329) ##22	dcxr (ENSNBRG00000023307)	rfng (ENSNBRG00000023292)	ENSNBRG00000023284	atp6v0a1b (ENSNBRG00000023271)	cavin1b (ENSNBRG00000023265)	stat5b (ENSNBRG00000023082)	ENSNBRG00000023029	NAGLU (ENSNBRG00000023017)	ipmkb (ENSNBRG00000023006)	ube2d1b (ENSNBRG00000022985)	tfam (ENSNBRG00000022965)	ENSNBRG00000022951	enpp7.2 (ENSNBRG00000022924)	ENSNBRG00000022907	RBFOX3 (ENSNBRG00000022885)
Nile tilapia	MODERN SPECIES	20	mtr (ENSONIG00000007216)	bms1 (ENSONIG00000007227)	adoa (ENSONIG00000007231)	egr2b (ENSONIG00000007232)	ENSONIG00000007233	nrbf2b (ENSONIG00000007234)	reep3b (ENSONIG00000007235)	JMJD1C (ENSONIG00000007237)	ENSONIG00000029140	cyp26a1 (ENSONIG00000007241)	exoc6 (ENSONIG00000007244)	ENSONIG00000007247	trub1 (ENSONIG00000032150)	LRRC45 (ENSONIG00000007250)	ENSONIG00000039447	rac3b (ENSONIG00000031516) ##22	dcxr (ENSONIG00000038565)	rfng (ENSONIG00000040440)	ENSONIG00000007251	atp6v0a1b (ENSONIG00000007252)	cavin1b (ENSONIG00000028627)	stat5b (ENSONIG00000007261)	ENSONIG00000040235	naglu (ENSONIG00000007274)	ipmkb (ENSONIG00000007277)	ube2d1b (ENSONIG00000029749)	tfam (ENSONIG00000007279)	ENSONIG00000007280	ENSONIG00000029548	ENSONIG00000028924	ENSONIG00000034444
Midas cichlid	MODERN SPECIES	81	ENSACIG00000002438	mtr (ENSACIG00000002494)	bms1 (ENSACIG00000002588)	adoa (ENSACIG00000002712)	egr2b (ENSACIG00000002735)	NHLRC3 (ENSACIG00000002747)	nrbf2b (ENSACIG00000002755)	reep3b (ENSACIG00000002784)	JMJD1C (ENSACIG00000002803)	cyp26a1 (ENSACIG00000002884)	exoc6 (ENSACIG00000002907)	ENSACIG00000002961	ENSACIG00000002973	trub1 (ENSACIG00000003060)	LRRC45 (ENSACIG00000003106)	rac3b (ENSACIG00000003152) ##22	dcxr (ENSACIG00000003173)	rfng (ENSACIG00000003194)	ENSACIG00000003218	atp6v0a1b (ENSACIG00000003305)	cavin1b (ENSACIG00000003366)	stat5b (ENSACIG00000003384)	NAGLU (ENSACIG00000003424)	ipmkb (ENSACIG00000003462)	ENSACIG00000003501	ube2d1b (ENSACIG00000003646)	tfam (ENSACIG00000003655)	zgc:171971 (ENSACIG00000003707)	enpp7.2 (ENSACIG00000003736)	RBFOX3 (ENSACIG00000003768)	ENSACIG00000003812
Pomacentridae	ANCESTRAL SPECIES	39	ENSGT00940000160084.h	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153195.B	ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000008657	ENSGT00390000000984	ENSGT00940000158794	ENSGT00940000158210.d	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000166815	ENSGT00940000158962	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.d ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00950000182881.a.a.b.i.a	ENSGT00950000182910.b.g.a	ENSGT01080000257420.C.b.b.c.b	ENSGT00390000006705	ENSGT00940000157276.d	ENSGT00940000178264	ENSGT00940000153251.b.b	ENSGT00940000158181.b	ENSGT00940000153536.a.b.b.a.a	ENSGT00940000159924.c.a	ENSGT00940000159339.sb.a	ENSGT00390000013948.b	ENSGT00440000039001
Pomacentridae_A	ANCESTRAL SPECIES	113	ENSGT00940000160084.h	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153195.B	ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000008657	ENSGT00390000000984	ENSGT00940000158794	ENSGT00940000158210.d	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000166815	ENSGT00940000158962	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.d ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00950000182881.a.a.b.i.a	ENSGT00950000182910.b.g.a	ENSGT01080000257420.C.b.b.c.b	ENSGT00390000006705	ENSGT00940000157276.d	ENSGT00940000178264	ENSGT00940000153251.b.b	ENSGT00940000158181.b	ENSGT00940000153536.a.b.b.a.a	ENSGT00940000159924.c.a	ENSGT00940000159339.sb.a	ENSGT00390000013948.b	ENSGT00440000039001
Amphiprion	ANCESTRAL SPECIES	85	ENSGT00940000160084.h	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153195.B	ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000008657	ENSGT00390000000984	ENSGT00940000158794	ENSGT00940000158210.d	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000166815	ENSGT00940000158962	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.d ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00950000182881.a.a.b.i.a	ENSGT00950000182910.b.g.a	ENSGT01080000257420.C.b.b.c.b	ENSGT00390000006705	ENSGT00940000157276.d	ENSGT00940000178264	ENSGT00940000158181.b	ENSGT00940000153536.a.b.b.a.a	ENSGT00940000159924.c.a	ENSGT00940000159339.sb.a	ENSGT00390000013948.b	ENSGT00440000039001	ENSGT00940000155109.a.b
Clown anemonefish	MODERN SPECIES	3651										JMJD1C (ENSAOCG00000017543)	cyp26a1 (ENSAOCG00000017446)	exoc6 (ENSAOCG00000017388)	ENSAOCG00000017243	LRRC45 (ENSAOCG00000017221)	trub1 (ENSAOCG00000017188)	rac3b (ENSAOCG00000017140) ##22	dcxr (ENSAOCG00000017116)	rfng (ENSAOCG00000017089)	atp6v0a1b (ENSAOCG00000001173)	cavin1b (ENSAOCG00000016962)	stat5b (ENSAOCG00000016951)
Orange clownfish	MODERN SPECIES	10	ENSAPEG00000014472	mtr (ENSAPEG00000014559)	bms1 (ENSAPEG00000014673)	adoa (ENSAPEG00000014791)	egr2b (ENSAPEG00000014798)	ENSAPEG00000014810	NHLRC3 (ENSAPEG00000014826)	nrbf2b (ENSAPEG00000014845)	reep3b (ENSAPEG00000014862)	JMJD1C (ENSAPEG00000014950)	cyp26a1 (ENSAPEG00000015001)	exoc6 (ENSAPEG00000015069)	ENSAPEG00000015177	trub1 (ENSAPEG00000015209)	LRRC45 (ENSAPEG00000015249)	rac3b (ENSAPEG00000015276) ##22	dcxr (ENSAPEG00000015301)	rfng (ENSAPEG00000015329)	atp6v0a1b (ENSAPEG00000015348)	cavin1b (ENSAPEG00000015465)	stat5b (ENSAPEG00000015501)	rab3gap1 (ENSAPEG00000015574)	ccdc57 (ENSAPEG00000015648)	ENSAPEG00000015784	slc16a3b (ENSAPEG00000015822)	CSNK1D (ENSAPEG00000015855)	RBFOX3 (ENSAPEG00000015891)	ENSAPEG00000015948	ENSAPEG00000015961	enpp7.2 (ENSAPEG00000015993)	ENSAPEG00000016083
Spiny chromis	MODERN SPECIES	1601															LRRC45 (ENSAPOG00000024227)	rac3b (ENSAPOG00000024210) ##22	dcxr (ENSAPOG00000024186)	rfng (ENSAPOG00000024139)	atp6v0a1b (ENSAPOG00000024119)	cavin1b (ENSAPOG00000024065)	stat5b (ENSAPOG00000024045)
Bicolor damselfish	MODERN SPECIES	390			ENSSPAG00000000736	adoa (ENSSPAG00000000763)	egr2b (ENSSPAG00000000768)	NHLRC3 (ENSSPAG00000000784)	nrbf2b (ENSSPAG00000000809)	reep3b (ENSSPAG00000000828)	JMJD1C (ENSSPAG00000000883)	cyp26a1 (ENSSPAG00000000923)	exoc6 (ENSSPAG00000000984)	ENSSPAG00000001161	ENSSPAG00000001189	trub1 (ENSSPAG00000001217)	LRRC45 (ENSSPAG00000001224)	rac3b (ENSSPAG00000001277) ##22	dcxr (ENSSPAG00000001300)	rfng (ENSSPAG00000001341)	atp6v0a1b (ENSSPAG00000001357)	cavin1b (ENSSPAG00000001425)	stat5b (ENSSPAG00000001471)	rab3gap1 (ENSSPAG00000001559)	ccdc57 (ENSSPAG00000001664)
Atherinomorphae	ANCESTRAL SPECIES	10	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153195.B	ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000008657	ENSGT00390000000984	ENSGT00940000158794	ENSGT00940000158210.d	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000161748	ENSGT00940000166815	ENSGT00940000158962	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.d ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00950000182881.a.a.b.i.a	ENSGT00950000182910.b.g.a	ENSGT01080000257420.C.b.b.c.b	ENSGT00390000005900	ENSGT00940000155309	ENSGT00390000013948.b	ENSGT00440000039001
Oryzias	ANCESTRAL SPECIES	11	ENSGT00940000153840.a.a.a.a	ENSGT00940000166206	ENSGT00940000153195.B	ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000008657	ENSGT00390000000984	ENSGT00940000158794	ENSGT00940000158210.d	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000161748	ENSGT00940000164435	ENSGT00940000158962	ENSGT00940000154003.B.f	ENSGT00940000153500.a.b.e.b.d ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00950000182881.a.a.b.i.a	ENSGT00950000182910.b.g.a	ENSGT01080000257420.C.b.b.c.b	ENSGT00390000005900	ENSGT00940000155309	ENSGT00440000039001	ENSGT00420000029824	ENSGT00940000153713.A	ENSGT00940000154610.e.a	ENSGT00950000183184.b.a	ENSGT00980000201950	ENSGT00470000042293.a.b.a.b	ENSGT00940000156497.b
Oryzias_b	ANCESTRAL SPECIES	45	ENSGT00940000164818.c.a	ENSGT00940000153840.a.a.a.a	ENSGT00940000166206	ENSGT00940000153195.B	ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000008657	ENSGT00390000000984	ENSGT00940000158794	ENSGT00940000158210.d	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000161748	ENSGT00940000158962	ENSGT00940000154003.B.f	ENSGT00940000153500.a.b.e.b.d ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00950000182881.a.a.b.i.a	ENSGT00950000182910.b.g.a	ENSGT01080000257420.C.b.b.c.b	ENSGT00390000005900	ENSGT00940000155309	ENSGT00440000039001	ENSGT00420000029824	ENSGT00940000153713.A	ENSGT00940000154610.e.a	ENSGT00950000183184.b.a	ENSGT00980000201950	ENSGT00470000042293.a.b.a.b	ENSGT00940000156497.b
Indian medaka	MODERN SPECIES	28	nme2a (ENSOMEG00000000383)	MBTD1 (ENSOMEG00000015112)	tdrkh (ENSOMEG00000015063)	bms1 (ENSOMEG00000015042)	adoa (ENSOMEG00000014983)	egr2b (ENSOMEG00000014974)	NHLRC3 (ENSOMEG00000014962)	nrbf2b (ENSOMEG00000014948)	reep3b (ENSOMEG00000014919)	JMJD1C (ENSOMEG00000014854)	cyp26a1 (ENSOMEG00000014802)	exoc6 (ENSOMEG00000014748)	ENSOMEG00000000361	trub1 (ENSOMEG00000014556)	LRRC45 (ENSOMEG00000014535)	rac3b (ENSOMEG00000014502) ##22	dcxr (ENSOMEG00000014479)	rfng (ENSOMEG00000014457)	atp6v0a1b (ENSOMEG00000014408)	cavin1b (ENSOMEG00000014302)	stat5b (ENSOMEG00000014252)	NAGLU (ENSOMEG00000014157)	ipmkb (ENSOMEG00000014134)	tfam (ENSOMEG00000014121)
Javanese ricefish	MODERN SPECIES	10	nme2a (ENSOJAG00000008373)	MBTD1 (ENSOJAG00000008292)	tdrkh (ENSOJAG00000008208)	bms1 (ENSOJAG00000007855)	adoa (ENSOJAG00000007839)	egr2b (ENSOJAG00000007832)	NHLRC3 (ENSOJAG00000007815)	nrbf2b (ENSOJAG00000007807)	reep3b (ENSOJAG00000007798)	ENSOJAG00000007792	cyp26a1 (ENSOJAG00000007644)	exoc6 (ENSOJAG00000007409)	HHEX (ENSOJAG00000007367)	trub1 (ENSOJAG00000007327)	LRRC45 (ENSOJAG00000006981)	rac3b (ENSOJAG00000006807) ##22	dcxr (ENSOJAG00000006784)	rfng (ENSOJAG00000006612)	atp6v0a1b (ENSOJAG00000006270)	cavin1b (ENSOJAG00000006202)	stat5b (ENSOJAG00000005822)	NAGLU (ENSOJAG00000005667)	ipmkb (ENSOJAG00000005644)	tfam (ENSOJAG00000005636)	ENSOJAG00000004340	ENSOJAG00000004311	FAM171A2 (ENSOJAG00000004291)	ENSOJAG00000004262	grnb (ENSOJAG00000003985)	ENSOJAG00000003945	ENSOJAG00000003908
Oryzias_a	ANCESTRAL SPECIES	49	ENSGT00940000164818.c.a	ENSGT00940000153840.a.a.a.a	ENSGT00940000166206	ENSGT00940000153195.B	ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000008657	ENSGT00390000000984	ENSGT00940000158794	ENSGT00940000158210.d	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000164435	ENSGT00940000158962	ENSGT00940000154003.B.f	ENSGT00940000153500.a.b.e.b.d ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00950000182881.a.a.b.i.a	ENSGT00950000182910.b.g.a	ENSGT00950000182910.b.h	ENSGT01080000257420.C.b.b.c.b	ENSGT00390000005900	ENSGT00940000155309	ENSGT00440000039001	ENSGT00420000029824	ENSGT00940000153713.A	ENSGT00940000154610.e.a	ENSGT00950000183184.b.a	ENSGT00470000042293.a.b.a.b	ENSGT00940000156497.b
Chinese medaka	MODERN SPECIES	134																rac3b (ENSOSIG00000021913) ##22	dcxr (ENSOSIG00000021925)	rfng (ENSOSIG00000021932)	atp6v0a1b (ENSOSIG00000022085)	ENSOSIG00000022871	stat5b (ENSOSIG00000022925)	NAGLU (ENSOSIG00000023085)	ipmkb (ENSOSIG00000023090)	tfam (ENSOSIG00000023093)	mtr (ENSOSIG00000023098)	ENSOSIG00000023121	grnb (ENSOSIG00000023132)	ENSOSIG00000023135	ENSOSIG00000023136	GRB7 (ENSOSIG00000023143)	SRCIN1 (ENSOSIG00000023158)
Japanese Medaka HdrR	MODERN SPECIES	10	ENSORLG00000029862	tdrkh (ENSORLG00000029204)	bms1 (ENSORLG00000014655)	adoa (ENSORLG00000024889)	egr2b (ENSORLG00000014600)	NHLRC3 (ENSORLG00000024133)	nrbf2b (ENSORLG00000014591)	ENSORLG00000024994	reep3b (ENSORLG00000014577)	JMJD1C (ENSORLG00000014554)	cyp26a1 (ENSORLG00000014516)	exoc6 (ENSORLG00000014488)	ENSORLG00000024913	trub1 (ENSORLG00000029719)	LRRC45 (ENSORLG00000002696)	rac3b (ENSORLG00000002677) ##22	ENSORLG00000028041	dcxr (ENSORLG00000002658)	rfng (ENSORLG00000014473)	atp6v0a1b (ENSORLG00000014447)	cavin1b (ENSORLG00000014348)	ENSORLG00000028175	ENSORLG00000014335	NAGLU (ENSORLG00000025072)	ipmkb (ENSORLG00000021897)	tfam (ENSORLG00000026096)	mtr (ENSORLG00000014271)	ENSORLG00000014229	ENSORLG00000014180	FAM171A2 (ENSORLG00000014147)	grnb (ENSORLG00000014130)
Cyprinodontiformes	ANCESTRAL SPECIES	47	ENSGT00940000160084.h	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153195.B	ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000008657	ENSGT00390000000984	ENSGT00940000158794	ENSGT00940000158210.d	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000166815	ENSGT00940000158962	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.d ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00950000182881.a.a.b.i.a	ENSGT00950000182910.b.g.a	ENSGT01080000257420.C.b.b.c.b	ENSGT00390000005900	ENSGT00940000155309	ENSGT00390000013948.b	ENSGT00440000039001	ENSGT00390000006705	ENSGT00940000157276.d	ENSGT00390000016550	ENSGT00940000166206	ENSGT00940000153840.a.a.a.a	ENSGT00940000164818.c.a
Cyprinodontoidei	ANCESTRAL SPECIES	65	ENSGT00940000160084.h	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153195.B	ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000008657	ENSGT00390000000984	ENSGT00940000158794	ENSGT00940000158210.d	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000166815	ENSGT00940000158962	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.d ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00950000182881.a.a.b.i.a	ENSGT00950000182910.b.g.a	ENSGT01080000257420.C.b.b.c.b	ENSGT00390000005900	ENSGT00940000155309	ENSGT00390000013948.b	ENSGT00440000039001	ENSGT00390000006705	ENSGT00940000157276.d	ENSGT00390000016550	ENSGT00940000166206	ENSGT00940000153840.a.a.a.a	ENSGT00940000164818.c.a
Poeciliinae	ANCESTRAL SPECIES	10	ENSGT00940000160084.h	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153195.B.t	ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000008657	ENSGT00390000000984	ENSGT00940000158794	ENSGT00940000158210.d	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000166815	ENSGT00940000158962	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.d ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00950000182881.a.a.b.i.a	ENSGT00950000182910.b.g.a	ENSGT01080000257420.C.b.b.c.b	ENSGT00390000005900	ENSGT00940000155309	ENSGT00390000013948.b	ENSGT00440000039001	ENSGT00390000006705	ENSGT00940000157276.d	ENSGT00390000016550	ENSGT00940000153840.a.a.a.a	ENSGT00940000166206	ENSGT00940000164818.c.a
Poecilia	ANCESTRAL SPECIES	15	ENSGT00940000160595.a.b	ENSGT00940000160175.a	ENSGT00940000165236	ENSGT00940000157982.a.a	ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000008657	ENSGT00390000000984	ENSGT00940000158794	ENSGT00940000158210.d	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000166815	ENSGT00940000158962	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.d ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00950000182881.a.a.b.i.a	ENSGT00950000182910.b.g.a	ENSGT01080000257420.C.b.b.c.b	ENSGT00390000005900	ENSGT00940000155309	ENSGT00390000013948.b	ENSGT00440000039001	ENSGT00390000006705	ENSGT00940000157276.d	ENSGT00390000016550	ENSGT00940000153840.a.a.a.a	ENSGT00940000166206	ENSGT00940000164818.c.a
NAME_6	ANCESTRAL SPECIES									ENSGT00390000000984	ENSGT00940000158794	ENSGT00940000158210.d	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000166815	ENSGT00940000158962	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.d ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00950000182881.a.a.b.i.a	ENSGT00950000182910.b.g.a	ENSGT01080000257420.C.b.b.c.b	ENSGT00390000005900	ENSGT00940000155309	ENSGT00390000013948.b	ENSGT00440000039001	ENSGT00390000006705	ENSGT00940000157276.d	ENSGT00390000016550	ENSGT00940000153840.a.a.a.a	ENSGT00940000166206	ENSGT00940000164818.c.a
Amazon molly	MODERN SPECIES	256			oard1 (ENSPFOG00000023558)	mtor (ENSPFOG00000008483)	ENSPFOG00000024817	angptl7 (ENSPFOG00000008574)	ENSPFOG00000020237	nrbf2b (ENSPFOG00000008621)	reep3b (ENSPFOG00000008670)	JMJD1C (ENSPFOG00000009146)	cyp26a1 (ENSPFOG00000009240)	exoc6 (ENSPFOG00000009842)	ENSPFOG00000009869	trub1 (ENSPFOG00000009950)	LRRC45 (ENSPFOG00000010153)	rac3b (ENSPFOG00000021912) ##22	dcxr (ENSPFOG00000010173)	rfng (ENSPFOG00000010243)	atp6v0a1b (ENSPFOG00000010533)	ENSPFOG00000024842	cavin1b (ENSPFOG00000010568)	stat5b (ENSPFOG00000010905)	NAGLU (ENSPFOG00000010949)	NAGLU (ENSPFOG00000010964)	ipmkb (ENSPFOG00000011046)	zgc:171971 (ENSPFOG00000011089)	tfam (ENSPFOG00000011152)	rab3gap1 (ENSPFOG00000011378)	ccdc57 (ENSPFOG00000012370)	TMEM94 (ENSPFOG00000012805)	MBTD1 (ENSPFOG00000012998)
Sailfin molly	MODERN SPECIES	1424											cyp26a1 (ENSPLAG00000013932)	exoc6 (ENSPLAG00000013914)	ENSPLAG00000013867	trub1 (ENSPLAG00000013855)	LRRC45 (ENSPLAG00000013850)	RAC3 (ENSPLAG00000013841) ##22
Guppy	MODERN SPECIES	449	ENSPREG00000002865	ENSPREG00000002880	ENSPREG00000002891	adoa (ENSPREG00000002918)	egr2b (ENSPREG00000002923)	NHLRC3 (ENSPREG00000002938)	nrbf2b (ENSPREG00000002957)	ENSPREG00000003016	reep3b (ENSPREG00000003030)	JMJD1C (ENSPREG00000003073)	cyp26a1 (ENSPREG00000003123)	exoc6 (ENSPREG00000003157)	ENSPREG00000003325	trub1 (ENSPREG00000003343)	LRRC45 (ENSPREG00000003361)	rac3b (ENSPREG00000003381) ##22	dcxr (ENSPREG00000003417)	rfng (ENSPREG00000003496)	atp6v0a1b (ENSPREG00000003535)	cavin1b (ENSPREG00000003623)	stat5b (ENSPREG00000003655)	NAGLU (ENSPREG00000003730)	ipmkb (ENSPREG00000003742)	ENSPREG00000003755	tfam (ENSPREG00000003762)	rab3gap1 (ENSPREG00000003783)	ccdc57 (ENSPREG00000003886)	TMEM94 (ENSPREG00000004033)	MBTD1 (ENSPREG00000004175)	tdrkh (ENSPREG00000004213)	nme2a (ENSPREG00000004292)
Platyfish	MODERN SPECIES	1	CHRM3 (ENSXMAG00000014400)	ENSXMAG00000014335	mtr (ENSXMAG00000014278)	bms1 (ENSXMAG00000014236)	adoa (ENSXMAG00000014234)	egr2b (ENSXMAG00000014233)	ENSXMAG00000014231	nrbf2b (ENSXMAG00000014226)	reep3b (ENSXMAG00000014205)	JMJD1C (ENSXMAG00000014154)	cyp26a1 (ENSXMAG00000014144)	exoc6 (ENSXMAG00000014142)	ENSXMAG00000028062	trub1 (ENSXMAG00000014701)	LRRC45 (ENSXMAG00000014712)	rac3b (ENSXMAG00000014734) ##22	dcxr (ENSXMAG00000023626)	rfng (ENSXMAG00000029644)	atp6v0a1b (ENSXMAG00000014530)	cavin1b (ENSXMAG00000014533)	stat5b (ENSXMAG00000014535)	NAGLU (ENSXMAG00000014537)	ipmkb (ENSXMAG00000014549)	ENSXMAG00000014555	tfam (ENSXMAG00000023857)	rab3gap1 (ENSXMAG00000014571)	ccdc57 (ENSXMAG00000014598)	TMEM94 (ENSXMAG00000014670)	MBTD1 (ENSXMAG00000014708)	tdrkh (ENSXMAG00000014756)	nme2a (ENSXMAG00000027226)
NAME_4	ANCESTRAL SPECIES	166	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153195.B	ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000008657	ENSGT00390000000984	ENSGT00940000158794	ENSGT00940000158210.d	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000161748	ENSGT00940000166815	ENSGT00940000158962	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.d ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00950000182881.a.a.b.i.a	ENSGT00950000182910.b.g.a	ENSGT01080000257420.C.b.b.c.b	ENSGT00390000005900	ENSGT00940000155309	ENSGT00390000013948.b	ENSGT00440000039001	ENSGT00390000006705	ENSGT00940000157276.d	ENSGT00390000016550	ENSGT00940000166206	ENSGT00940000153840.a.a.a.a	ENSGT00940000164818.c.a
Mummichog	MODERN SPECIES	2362									nrbf2b (ENSFHEG00000004300)	reep3b (ENSFHEG00000004284)	JMJD1C (ENSFHEG00000004232)	exoc6 (ENSFHEG00000004184)	ENSFHEG00000004040	trub1 (ENSFHEG00000004016)	LRRC45 (ENSFHEG00000004000)	rac3b (ENSFHEG00000003989) ##22	dcxr (ENSFHEG00000003964)	rfng (ENSFHEG00000003950)	atp6v0a1b (ENSFHEG00000003941)	cavin1b (ENSFHEG00000003909)	stat5b (ENSFHEG00000003892)	NAGLU (ENSFHEG00000003824)	ipmkb (ENSFHEG00000003808)	ENSFHEG00000003803	rab3gap1 (ENSFHEG00000003790)	ccdc57 (ENSFHEG00000003747)	TMEM94 (ENSFHEG00000003651)	tdrkh (ENSFHEG00000003544)	MBTD1 (ENSFHEG00000003527)	nme2a (ENSFHEG00000003473)	nudt13 (ENSFHEG00000003468)
Sheepshead minnow	MODERN SPECIES	301	ENSCVAG00000008149	ENSCVAG00000008195	mtr (ENSCVAG00000000233)	bms1 (ENSCVAG00000008371)	adoa (ENSCVAG00000008376)	egr2b (ENSCVAG00000008387)	NHLRC3 (ENSCVAG00000008390)	nrbf2b (ENSCVAG00000008393)	reep3a (ENSCVAG00000008434)	ENSCVAG00000008461	cyp26a1 (ENSCVAG00000008500)	exoc6 (ENSCVAG00000008735)	HHEX (ENSCVAG00000008782)	trub1 (ENSCVAG00000008791)	LRRC45 (ENSCVAG00000008804)	rac3b (ENSCVAG00000008819) ##22	dcxr (ENSCVAG00000008828)	rfng (ENSCVAG00000008858)	atp6v0a1b (ENSCVAG00000008947)	ENSCVAG00000008959	stat5b (ENSCVAG00000009048)	NAGLU (ENSCVAG00000009060)	ipmkb (ENSCVAG00000009067)	ENSCVAG00000009078	tfam (ENSCVAG00000009261)	TMEM94 (ENSCVAG00000009339)	ccdc57 (ENSCVAG00000009745)
Aplocheiloidei	ANCESTRAL SPECIES	149					ENSGT00390000014082.a.b	ENSGT00940000158394.e	ENSGT00390000008657	ENSGT00390000000984	ENSGT00940000158794	ENSGT00940000158210.d	ENSGT00800000124060.B	ENSGT00390000005739.a.b	ENSGT00940000166815	ENSGT00940000158962	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.d ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00950000182881.a.a.b.i.a	ENSGT00950000182910.b.g.a	ENSGT01080000257420.C.b.b.c.b	ENSGT00390000005900
Mangrove rivulus	MODERN SPECIES	162	ENSKMAG00000006769	tefa (ENSKMAG00000006753)	phf5a (ENSKMAG00000006739)	ENSKMAG00000006728	adoa (ENSKMAG00000006721)	egr2b (ENSKMAG00000006706)	ENSKMAG00000006689	nrbf2b (ENSKMAG00000006676)	reep3b (ENSKMAG00000006646)	JMJD1C (ENSKMAG00000006552)	cyp26a1 (ENSKMAG00000006451)	exoc6 (ENSKMAG00000006322)	ENSKMAG00000006255	trub1 (ENSKMAG00000006232)	LRRC45 (ENSKMAG00000006223)	rac3b (ENSKMAG00000006188) ##22	dcxr (ENSKMAG00000006151)	rfng (ENSKMAG00000006116)	atp6v0a1b (ENSKMAG00000006011)	cavin1b (ENSKMAG00000005991)	stat5b (ENSKMAG00000005900)	NAGLU (ENSKMAG00000005849)	ENSKMAG00000005834	lhb (ENSKMAG00000005594)	ENSKMAG00000005450
Pinecone sodierfish	MODERN SPECIES	10	exoc6 (ENSMMDG00005005729)	cyp26a1 (ENSMMDG00005005700)	ENSMMDG00005005697	ENSMMDG00005005696	reep3b (ENSMMDG00005005693)	nrbf2b (ENSMMDG00005005691)	NHLRC3 (ENSMMDG00005005690)	egr2b (ENSMMDG00005005688)	adoa (ENSMMDG00005005686)	ENSMMDG00005005685	ENSMMDG00005005680	ENSMMDG00005005676	tmem26b (ENSMMDG00005005674)	ENSMMDG00005005672	LRRC45 (ENSMMDG00005005488)	rac3b (ENSMMDG00005005458) ##22	dcxr (ENSMMDG00005005453)	rfng (ENSMMDG00005005428)	gps1 (ENSMMDG00005003149)	ENSMMDG00005003084	ccdc57 (ENSMMDG00005002740)	CCDC57 (ENSMMDG00005002588)	slc16a3b (ENSMMDG00005002551)	CSNK1D (ENSMMDG00005002524)	c1qtnf1 (ENSMMDG00005002517)	RBFOX3 (ENSMMDG00005002489)	ENSMMDG00005024006	enpp7.2 (ENSMMDG00005024002)	ENSMMDG00005024000	zgc:171971 (ENSMMDG00005023998)	tfam (ENSMMDG00005023994)
Cod	MODERN SPECIES	9	ENSGMOG00000017709	ENSGMOG00000014552	ENSGMOG00000000520	ENSGMOG00000000529	mrpl27 (ENSGMOG00000035435)	ENSGMOG00000036572	nme2a (ENSGMOG00000009283)	ENSGMOG00000009288	tdrkh (ENSGMOG00000009304)	ENSGMOG00000009320	ENSGMOG00000022376	llgl2 (ENSGMOG00000009425)	galk1 (ENSGMOG00000009452)	ENSGMOG00000009466	LRRC45 (ENSGMOG00000000342)	rac3b (ENSGMOG00000007736) ##22	dcxr (ENSGMOG00000000365)	rfng (ENSGMOG00000000374)	ENSGMOG00000000388	ENSGMOG00000015839	ENSGMOG00000015819	ENSGMOG00000035833	ENSGMOG00000029683	ENSGMOG00000023023	ENSGMOG00000028179	ENSGMOG00000034694	ENSGMOG00000035983	ENSGMOG00000000029	ENSGMOG00000030902	ENSGMOG00000034955	ENSGMOG00000023316
Protacanthopterygii	DUPLICATION
Protacanthopterygii	ANCESTRAL SPECIES	4	ENSGT00950000183157.a.a.a.b ##35	ENSGT00940000160116.a	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015076	ENSGT01060000248591.a.a.a.a.a	ENSGT01030000234951	ENSGT00530000063996.a	ENSGT00940000155575.i.a	ENSGT00940000159093	ENSGT00940000156833.a	ENSGT00940000155148.a.b	ENSGT00950000182951.A.b	ENSGT00940000166249	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.e ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00510000046608.A.d	ENSGT01070000253744.a.a.a.b.a.b	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181.b	ENSGT00940000153536.a.b.b.a.a.a	ENSGT00940000160989	ENSGT00940000163996	ENSGT00950000183060.a.b.a.b	ENSGT00390000003718	ENSGT00940000155761.c.a.a	ENSGT00940000155761.c.a.b	ENSGT00940000155761.c.b
Salmoninae	ANCESTRAL SPECIES	19	ENSGT00940000160116.a.d	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b.f ##35	ENSGT00940000160116.a.c	ENSGT00940000159369.e	ENSGT00520000061927	ENSGT00390000015076.a	ENSGT01060000248591.a.a.a.a.a.d	ENSGT01030000234951.a	ENSGT00940000155575.i.a.c	ENSGT00940000159093	ENSGT00940000156833.a.a.b	ENSGT00940000155148.a.b.c	ENSGT00950000182951.A.b.ab	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.e ##22	ENSGT00940000154873	ENSGT00940000160801.g	ENSGT00510000046608.A.d.a	ENSGT01070000253744.a.a.a.b.a.b.b	ENSGT00940000157276.d.m.a	ENSGT00940000153251.b.b	ENSGT00940000158181.b.a	ENSGT00940000153536.a.b.b.a.a.a.b	ENSGT00940000160989.e	ENSGT00940000163996.f	ENSGT00950000183060.a.b.a.b.a.a	ENSGT00390000003718	ENSGT00940000155761.c.a.a	ENSGT00940000161435.a.a.c	ENSGT00950000182696.B.a.a.b.d.a
Huchen	MODERN SPECIES	510															LRRC45 (ENSHHUG00000016893)	rac3b (ENSHHUG00000016922) ##22	dcxr (ENSHHUG00000017738)	rfng (ENSHHUG00000017750)	gps1 (ENSHHUG00000017795)	ENSHHUG00000018380	ENSHHUG00000018390	ccdc57 (ENSHHUG00000018399)	CCDC57 (ENSHHUG00000018510)	slc16a3b (ENSHHUG00000018533)	CSNK1D (ENSHHUG00000018640)	KIF19 (ENSHHUG00000018737)	ENSHHUG00000018751	ttyh2 (ENSHHUG00000018772)	RPL38 (ENSHHUG00000018793)
Salmoninae_a	ANCESTRAL SPECIES	38	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b.f ##35	ENSGT00940000160116.a.c	ENSGT00940000159369.e	ENSGT00520000061927.i	ENSGT00520000061927.j	ENSGT00390000015076.a	ENSGT01060000248591.a.a.a.a.a.d	ENSGT01030000234951.a	ENSGT00940000155575.i.a.c	ENSGT00940000159093	ENSGT00940000156833.a.a.b	ENSGT00940000155148.a.b.c	ENSGT00950000182951.A.b.ab	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.e ##22	ENSGT00940000154873	ENSGT00940000160801.g	ENSGT00510000046608.A.d.a	ENSGT01070000253744.a.a.a.b.a.b.b	ENSGT00940000157276.d.m.a	ENSGT00940000153251.b.b	ENSGT00940000158181.b.a	ENSGT00940000153536.a.b.b.a.a.a.b	ENSGT00940000160989.e	ENSGT00940000163996.f	ENSGT00950000183060.a.b.a.b.a.a	ENSGT00390000003718	ENSGT00940000155761.c.a.a	ENSGT00940000161435.a.a.c	ENSGT00940000161131.a.b
Salmo	ANCESTRAL SPECIES	38	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b.f ##35	ENSGT00940000160116.a.c	ENSGT00940000159369.e	ENSGT00520000061927.i	ENSGT00520000061927.j	ENSGT00390000015076.a	ENSGT01060000248591.a.a.a.a.a.d	ENSGT01030000234951.a	ENSGT00940000155575.i.a.c	ENSGT00940000159093	ENSGT00940000156833.a.a.b	ENSGT00940000155148.a.b.c	ENSGT00950000182951.A.b.ab	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.e ##22	ENSGT00940000154873	ENSGT00940000160801.g	ENSGT00510000046608.A.d.a	ENSGT01070000253744.a.a.a.b.a.b.b	ENSGT00940000157276.d.m.a	ENSGT00940000153251.b.b	ENSGT00940000158181.b.a	ENSGT00940000153536.a.b.b.a.a.a.b	ENSGT00940000160989.e	ENSGT00940000163996.f	ENSGT00950000183060.a.b.a.b.a.a	ENSGT00390000003718	ENSGT00940000155761.c.a.a	ENSGT00940000161435.a.a.c	ENSGT00940000161131.a.b
River trout	MODERN SPECIES	1	FAAP100 (ENSSTUG00000003852)	fscn2b (ENSSTUG00000003901) ##35	BAHCC1 (ENSSTUG00000003935)	SLC38A10 (ENSSTUG00000003997)	ndufaf8 (ENSSTUG00000004107)	ndufaf8 (ENSSTUG00000004126)	TEPSIN (ENSSTUG00000004183)	nptx2b (ENSSTUG00000004220)	ENSSTUG00000004237	SLC16A6 (ENSSTUG00000004244)	arsg (ENSSTUG00000004270)	WIPI1 (ENSSTUG00000004345)	prkar1ab (ENSSTUG00000004409)	FAM20A (ENSSTUG00000004576)	LRRC45 (ENSSTUG00000004663)	rac3b (ENSSTUG00000004878) ##22	dcxr (ENSSTUG00000004880)	rfng (ENSSTUG00000004903)	gps1 (ENSSTUG00000005076)	ccdc57 (ENSSTUG00000005642)	CCDC57 (ENSSTUG00000006033)	slc16a3b (ENSSTUG00000006098)	CSNK1D (ENSSTUG00000006417)	KIF19 (ENSSTUG00000006437)	ENSSTUG00000006501	ttyh2 (ENSSTUG00000006569)	RPL38 (ENSSTUG00000006669)	ENSSTUG00000006691	SDK2 (ENSSTUG00000006831)	CDC42EP4 (ENSSTUG00000007532)	ENSSTUG00000007557
Oncorhynchus	ANCESTRAL SPECIES	23	ENSGT00390000011615.A.b	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b.f ##35	ENSGT00940000160116.a.c	ENSGT00940000159369.e	ENSGT00520000061927.i	ENSGT00520000061927.j	ENSGT01060000248591.a.a.a.a.a.d	ENSGT01030000234951.a	ENSGT00940000155575.i.a.c	ENSGT00940000159093	ENSGT00940000156833.a.a.b	ENSGT00940000155148.a.b.c	ENSGT00950000182951.A.b.ab	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.e ##22	ENSGT00940000154873	ENSGT00940000160801.g	ENSGT00510000046608.A.d.a	ENSGT01070000253744.a.a.a.b.a.b.b	ENSGT00940000157276.d.m.a	ENSGT00940000153251.b.b	ENSGT00940000158181.b.a	ENSGT00940000153536.a.b.b.a.a.a.b	ENSGT00940000160989.e	ENSGT00940000163996.f	ENSGT00950000183060.a.b.a.b.a.a	ENSGT00390000003718	ENSGT00940000155761.c.a.a	ENSGT00940000161435.a.a.c	ENSGT00940000161131.a.b
Rainbow trout	MODERN SPECIES	12	BAHCC1 (ENSOMYG00000071984)	ENSOMYG00000071915	ENSOMYG00000054668	SLC38A10 (ENSOMYG00000035117)	ndufaf8 (ENSOMYG00000050945)	ndufaf8 (ENSOMYG00000035184)	ENSOMYG00000035197	ENSOMYG00000035219	ENSOMYG00000035225	SLC16A6 (ENSOMYG00000035232)	ARSG (ENSOMYG00000035243)	WIPI1 (ENSOMYG00000035284)	prkar1ab (ENSOMYG00000035337)	FAM20A (ENSOMYG00000035410)	LRRC45 (ENSOMYG00000035484)	rac3b (ENSOMYG00000035592) ##22	dcxr (ENSOMYG00000035622)	rfng (ENSOMYG00000035629)	GPS1 (ENSOMYG00000035733)	ENSOMYG00000036683	ccdc57 (ENSOMYG00000036739)	CCDC57 (ENSOMYG00000037068)	ENSOMYG00000067398	SLC16A3 (ENSOMYG00000037100)	CSNK1D (ENSOMYG00000037175)	KIF19 (ENSOMYG00000037729)	ttyh2 (ENSOMYG00000037971)	RPL38 (ENSOMYG00000038132)	SDK2 (ENSOMYG00000038859)	CDC42EP4 (ENSOMYG00000040046)	ENSOMYG00000040048
Oncorhynchus_a	ANCESTRAL SPECIES	18	ENSGT00390000018266.vd.a	ENSGT00390000011615.A.b	ENSGT00390000016682	ENSGT00950000183157.a.a.a.b.f ##35	ENSGT00940000160116.a.c	ENSGT00940000159369.e	ENSGT00520000061927.i	ENSGT01060000248591.a.a.a.a.a.d	ENSGT01030000234951.a	ENSGT00940000155575.i.a.c	ENSGT00940000159093	ENSGT00940000156833.a.a.b	ENSGT00940000155148.a.b.c	ENSGT00950000182951.A.b.ab	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b.e ##22	ENSGT00940000154873	ENSGT00940000160801.g	ENSGT00510000046608.A.d.a	ENSGT01070000253744.a.a.a.b.a.b.b	ENSGT00940000157276.d.m.a	ENSGT00940000153251.b.b	ENSGT00940000158181.b.a	ENSGT00940000153536.a.b.b.a.a.a.b	ENSGT00940000160989.e	ENSGT00940000163996.f	ENSGT00950000183060.a.b.a.b.a.a	ENSGT00390000003718	ENSGT00940000155761.c.a.a	ENSGT00940000161435.a.a.c	ENSGT00940000161131.a.b
Coho salmon	MODERN SPECIES	17	FAAP100 (ENSOKIG00005010579)	fscn2b (ENSOKIG00005010585) ##35	ENSOKIG00005010596	BAHCC1 (ENSOKIG00005010601)	SLC38A10 (ENSOKIG00005010616)	ndufaf8 (ENSOKIG00005010643)	ENSOKIG00005010648	NPTX2 (ENSOKIG00005010656)	ENSOKIG00005010663	SLC16A6 (ENSOKIG00005010670)	arsg (ENSOKIG00005010681)	WIPI1 (ENSOKIG00005010726)	prkar1ab (ENSOKIG00005010744)	FAM20A (ENSOKIG00005010846)	LRRC45 (ENSOKIG00005011056)	rac3b (ENSOKIG00005011273) ##22	dcxr (ENSOKIG00005011290)	rfng (ENSOKIG00005011311)	GPS1 (ENSOKIG00005011361)	ENSOKIG00005011419	ccdc57 (ENSOKIG00005011465)	CCDC57 (ENSOKIG00005011797)	SLC16A3 (ENSOKIG00005011847)	CSNK1D (ENSOKIG00005011913)	KIF19 (ENSOKIG00005012296)	ENSOKIG00005012452	ttyh2 (ENSOKIG00005012626)	ENSOKIG00005006235	RPL38 (ENSOKIG00005006247)	ENSOKIG00005006267	SDK2 (ENSOKIG00005006434)
Chinook salmon	MODERN SPECIES	17	TMEM235 (ENSOTSG00005003695)	FAAP100 (ENSOTSG00005003696)	fscn2b (ENSOTSG00005003698) ##35	ENSOTSG00005003702	SLC38A10 (ENSOTSG00005003716)	ndufaf8 (ENSOTSG00005003732)	nptx2b (ENSOTSG00005003733)	ENSOTSG00005003735	ENSOTSG00005003738	SLC16A6 (ENSOTSG00005003740)	arsg (ENSOTSG00005003741)	WIPI1 (ENSOTSG00005003812)	prkar1ab (ENSOTSG00005003816)	FAM20A (ENSOTSG00005003844)	LRRC45 (ENSOTSG00005004902)	rac3b (ENSOTSG00005005071) ##22	dcxr (ENSOTSG00005005079)	rfng (ENSOTSG00005005082)	gps1 (ENSOTSG00005005152)	ENSOTSG00005005217	ccdc57 (ENSOTSG00005005247)	slc16a3b (ENSOTSG00005005340)	CSNK1D (ENSOTSG00005005342)	KIF19 (ENSOTSG00005005399)	ENSOTSG00005005474	ttyh2 (ENSOTSG00005005492)	rpl38 (ENSOTSG00005006021)	SDK2 (ENSOTSG00005006045)	CDC42EP4 (ENSOTSG00005008059)	ENSOTSG00005008061	PMP22 (ENSOTSG00005008063)
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT00940000153500.a.b.e.b.f ##22
Salmoninae	ANCESTRAL SPECIES	675				ENSGT00940000159369.f	ENSGT01100000264586.a.a	ENSGT00390000015076.b	ENSGT00940000164855	ENSGT01060000248591.a.a.a.a.a.c	ENSGT01030000234951.b	ENSGT00530000063996.a	ENSGT00940000155575.i.a.d	ENSGT00940000156833.a.a.a	ENSGT00940000155148.a.b.d	ENSGT00950000182951.A.b.`b	ENSGT00940000166249	ENSGT00940000153500.a.b.e.b.f ##22
Salmoninae_a	ANCESTRAL SPECIES	95	ENSGT00950000183157.a.a.a.b.e ##35	ENSGT00940000160116.a.d	ENSGT00940000159369.f	ENSGT01050000246227	ENSGT01100000264586.a.a	ENSGT00390000015076.b	ENSGT00940000164855	ENSGT01060000248591.a.a.a.a.a.c	ENSGT01030000234951.b	ENSGT00530000063996.a	ENSGT00940000155575.i.a.d	ENSGT00940000156833.a.a.a	ENSGT00940000155148.a.b.d	ENSGT00950000182951.A.b.`b	ENSGT00940000166249	ENSGT00940000153500.a.b.e.b.f ##22	ENSGT00940000160801.h	ENSGT00510000046608.A.d.b	ENSGT01070000253744.a.a.a.b.a.b.a	ENSGT00940000157276.d.m.b	ENSGT00940000158181.b.b	ENSGT00940000153536.a.b.b.a.a.a.a	ENSGT00940000160989.f	ENSGT00940000163996.e	ENSGT00950000183060.a.b.a.b.a.b	ENSGT00390000012340.h.b	ENSGT00940000155761.c.a.b	ENSGT00940000161435.a.a.d	ENSGT00950000182696.B.a.a.b.d.b	ENSGT00940000163827.a.a.a.a.d	ENSGT00940000154768.A.a.g.b.h.b
Oncorhynchus	ANCESTRAL SPECIES	17	ENSGT00510000047537	ENSGT00950000183157.a.a.a.b.e ##35	ENSGT00940000160116.a.d	ENSGT00940000159369.f	ENSGT01050000246227	ENSGT00390000015076.b	ENSGT00940000164855	ENSGT01060000248591.a.a.a.a.a.c	ENSGT01030000234951.b	ENSGT00530000063996.a	ENSGT00940000155575.i.a.d	ENSGT00940000156833.a.a.a	ENSGT00940000155148.a.b.d	ENSGT00950000182951.A.b.`b	ENSGT00940000166249	ENSGT00940000153500.a.b.e.b.f ##22	ENSGT00940000160801.h	ENSGT00510000046608.A.d.b	ENSGT01070000253744.a.a.a.b.a.b.a	ENSGT00940000157276.d.m.b	ENSGT00940000158181.b.b	ENSGT00940000153536.a.b.b.a.a.a.a	ENSGT00940000160989.f	ENSGT00940000163996.e	ENSGT00950000183060.a.b.a.b.a.b	ENSGT00390000012340.h.b	ENSGT00940000155761.c.a.b	ENSGT00940000161435.a.a.d	ENSGT00950000182696.B.a.a.b.d.b	ENSGT00940000163827.a.a.a.a.d	ENSGT00940000154768.A.a.g.b.h.b
Rainbow trout	MODERN SPECIES	15	SLC38A10 (ENSOMYG00000024641)	ENSOMYG00000056705	ENSOMYG00000024708	TEPSIN (ENSOMYG00000024676)	ENSOMYG00000024742	ENSOMYG00000063962	ENSOMYG00000024773	ENSOMYG00000024782	AMZ2 (ENSOMYG00000024812)	SLC16A6 (ENSOMYG00000024842)	WIPI1 (ENSOMYG00000024931)	ENSOMYG00000066257	prkar1ab (ENSOMYG00000025149)	FAM20A (ENSOMYG00000025260)	ENSOMYG00000025617	rac3b (ENSOMYG00000067326) ##22	RFNG (ENSOMYG00000025648)	GPS1 (ENSOMYG00000025908)	ENSOMYG00000026735	ccdc57 (ENSOMYG00000027199)	SLC16A3 (ENSOMYG00000027728)	CSNK1D (ENSOMYG00000027809)	KIF19 (ENSOMYG00000027874)	ENSOMYG00000027913	ENSOMYG00000076247	ttyh2 (ENSOMYG00000027949)	ENSOMYG00000074634	SDK2 (ENSOMYG00000029515)	CDC42EP4 (ENSOMYG00000032291)	ENSOMYG00000066268	ENSOMYG00000032297
Oncorhynchus_a	ANCESTRAL SPECIES	13	ENSGT00510000047537	ENSGT00950000183157.a.a.a.b.e ##35	ENSGT00940000160116.a.d	ENSGT00940000159369.f	ENSGT01050000246227	ENSGT00390000015076.b	ENSGT00940000164855	ENSGT01060000248591.a.a.a.a.a.c	ENSGT01030000234951.b	ENSGT00530000063996.a	ENSGT00940000155575.i.a.d	ENSGT00940000156833.a.a.a	ENSGT00940000155148.a.b.d	ENSGT00950000182951.A.b.`b	ENSGT00940000166249	ENSGT00940000153500.a.b.e.b.f ##22	ENSGT00940000160801.h	ENSGT00510000046608.A.d.b	ENSGT01070000253744.a.a.a.b.a.b.a	ENSGT00940000157276.d.m.b	ENSGT00940000158181.b.b	ENSGT00940000153536.a.b.b.a.a.a.a	ENSGT00940000160989.f	ENSGT00940000163996.e	ENSGT00950000183060.a.b.a.b.a.b	ENSGT00390000012340.h.b	ENSGT00940000155761.c.a.b	ENSGT00940000161435.a.a.d	ENSGT00950000182696.B.a.a.b.d.b	ENSGT00940000163827.a.a.a.a.d	ENSGT00940000154768.A.a.g.b.h.b
Chinook salmon	MODERN SPECIES		foxl3 (ENSOTSG00005027291)	ENSOTSG00005027294	ENSOTSG00005027296	ENSOTSG00005027297	SLC38A10 (ENSOTSG00005027299)	ENSOTSG00005027302	ENSOTSG00005027314	ENSOTSG00005027316	ENSOTSG00005027318	AMZ2 (ENSOTSG00005027325)	SLC16A6 (ENSOTSG00005027330)	WIPI1 (ENSOTSG00005027334)	prkar1ab (ENSOTSG00005027335)	FAM20A (ENSOTSG00005027370)	ENSOTSG00005027371	rac3b (ENSOTSG00005027372) ##22	rfng (ENSOTSG00005027374)	gps1 (ENSOTSG00005028096)	ENSOTSG00005028125	ccdc57 (ENSOTSG00005028129)	slc16a3b (ENSOTSG00005028623)	CSNK1D (ENSOTSG00005028624)	KIF19 (ENSOTSG00005028625)	ENSOTSG00005028627	ttyh2 (ENSOTSG00005028628)	lmo4b (ENSOTSG00005028629)	ENSOTSG00005028632	tmem130 (ENSOTSG00005028633)	baiap2l1a (ENSOTSG00005028634)	TECPR1 (ENSOTSG00005028636) #8	bhlha15 (ENSOTSG00005028722) #9
Coho salmon	MODERN SPECIES	2	ENSOKIG00005003837	fscn2b (ENSOKIG00005003832) ##35	BAHCC1 (ENSOKIG00005003815)	SLC38A10 (ENSOKIG00005003794)	ENSOKIG00005003784	TEPSIN (ENSOKIG00005003767)	ENSOKIG00005003755	nptx2b (ENSOKIG00005003748)	ENSOKIG00005003738	AMZ2 (ENSOKIG00005003731)	SLC16A6 (ENSOKIG00005003722)	WIPI1 (ENSOKIG00005003654)	prkar1ab (ENSOKIG00005003606)	FAM20A (ENSOKIG00005003423)	ENSOKIG00005003383	rac3b (ENSOKIG00005003357) ##22	RFNG (ENSOKIG00005003226)	GPS1 (ENSOKIG00005002968)	ENSOKIG00005002919	ccdc57 (ENSOKIG00005002675)	ENSOKIG00005002561	slc16a3b (ENSOKIG00005002544)	CSNK1D (ENSOKIG00005002520)	KIF19 (ENSOKIG00005002457)	ENSOKIG00005002321	ttyh2 (ENSOKIG00005002013)	ENSOKIG00005048969	ENSOKIG00005048966	ENSOKIG00005048962	ENSOKIG00005048961	ENSOKIG00005048956
Salmo	ANCESTRAL SPECIES	31	ENSGT00950000183157.a.a.a.b.e ##35	ENSGT00940000160116.a.d	ENSGT00940000159369.f	ENSGT01050000246227	ENSGT01100000264586.a.a	ENSGT00390000015076.b	ENSGT00940000164855	ENSGT01060000248591.a.a.a.a.a.c	ENSGT01030000234951.b	ENSGT00530000063996.a	ENSGT00940000155575.i.a.d	ENSGT00940000156833.a.a.a	ENSGT00940000155148.a.b.d	ENSGT00950000182951.A.b.`b	ENSGT00940000166249	ENSGT00940000153500.a.b.e.b.f ##22	ENSGT00940000160801.h	ENSGT00510000046608.A.d.b	ENSGT00940000157276.d.m.b	ENSGT00940000158181.b.b	ENSGT00940000153536.a.b.b.a.a.a.a	ENSGT00940000160989.f	ENSGT00940000163996.e	ENSGT00950000183060.a.b.a.b.a.b	ENSGT00390000012340.h.b	ENSGT00940000155761.c.a.b	ENSGT00940000161435.a.a.d	ENSGT00940000154768.A.a.g.b.h.b	ENSGT00940000154768.A.a.h.d	ENSGT00940000167583	ENSGT00940000158833.a.b.f
River trout	MODERN SPECIES	9	BAHCC1 (ENSSTUG00000049776)	ENSSTUG00000049770	SLC38A10 (ENSSTUG00000049763)	ENSSTUG00000049761	ENSSTUG00000049759	TEPSIN (ENSSTUG00000049757)	ENSSTUG00000049751	nptx2b (ENSSTUG00000049749)	AMZ2 (ENSSTUG00000049741)	SLC16A6 (ENSSTUG00000049739)	WIPI1 (ENSSTUG00000049710)	prkar1ab (ENSSTUG00000049694)	FAM20A (ENSSTUG00000049659)	ENSSTUG00000049654	ENSSTUG00000049650	rac3b (ENSSTUG00000049648) ##22	rfng (ENSSTUG00000049589)	gps1 (ENSSTUG00000049450)	ccdc57 (ENSSTUG00000045279)	slc16a3b (ENSSTUG00000045142)	CSNK1D (ENSSTUG00000045069)	KIF19 (ENSSTUG00000044958)	ENSSTUG00000044897	ttyh2 (ENSSTUG00000044571)	RPL38 (ENSSTUG00000044517)	glod4 (ENSSTUG00000044489)	SDK2 (ENSSTUG00000043524)	CDC42EP4 (ENSSTUG00000043457)	ENSSTUG00000043452	PMP22 (ENSSTUG00000043439)	ENSSTUG00000043434
Northern pike	MODERN SPECIES	4	FAAP100 (ENSELUG00000017501)	fscn2b (ENSELUG00000017492) ##35	BAHCC1 (ENSELUG00000000679)	ENSELUG00000034344	SLC38A10 (ENSELUG00000017409)	ndufaf8 (ENSELUG00000017370)	TEPSIN (ENSELUG00000017357)	nptx2b (ENSELUG00000017350)	SLC16A6 (ENSELUG00000017329)	arsg (ENSELUG00000017289)	WIPI1 (ENSELUG00000017214)	prkar1ab (ENSELUG00000017151)	fam20a (ENSELUG00000034237)	ENSELUG00000017106	LRRC45 (ENSELUG00000017064)	rac3b (ENSELUG00000029410) ##22	dcxr (ENSELUG00000017016)	rfng (ENSELUG00000016975)	gps1 (ENSELUG00000016950)	ENSELUG00000016897	ccdc57 (ENSELUG00000016873)	CCDC57 (ENSELUG00000001328)	slc16a3b (ENSELUG00000016708)	CSNK1D (ENSELUG00000016666)	KIF19 (ENSELUG00000016621)	ENSELUG00000016599	ttyh2 (ENSELUG00000016559)	rpl38 (ENSELUG00000016533)	nccrp1 (ENSELUG00000016518)	SDK2 (ENSELUG00000016437)	CDC42EP4 (ENSELUG00000025147)
Clupeocephala	ANCESTRAL SPECIES	290	ENSGT01030000234862	ENSGT00940000162720.a.b.a	ENSGT00390000001488	ENSGT00940000164817	ENSGT00940000153578.B	ENSGT00940000156435	ENSGT00390000007164	ENSGT00770000120884	ENSGT00940000171636	ENSGT00390000017136	ENSGT00940000156505.t	ENSGT00940000155575.i.b	ENSGT00940000156833.b	ENSGT00950000183183.a	ENSGT00940000155148.a.a	ENSGT00940000153500.a.b.f ##22
Otomorpha	ANCESTRAL SPECIES	233				ENSGT00940000156833.a	ENSGT00940000155148.a.b	ENSGT00950000182951.A.b	ENSGT00940000166249	ENSGT00940000154003.B	ENSGT00940000153500.a.b.e.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00940000155575.j	ENSGT00940000156833.b	ENSGT00950000183183.a	ENSGT00940000155148.a.a	ENSGT00940000153500.a.b.f ##22	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000153536.a.b.a.b	ENSGT00940000158181.d	ENSGT00390000018512	ENSGT00940000156193	ENSGT00390000004832	ENSGT00440000033742.a.b.d	ENSGT00390000012364.a	ENSGT00940000153469.a.b	ENSGT00940000153469.a.a.k	ENSGT00940000156498.g.a	ENSGT00940000155641.g.a	ENSGT00390000005481	ENSGT00730000111057.c
Otophysi	ANCESTRAL SPECIES	159	ENSGT00730000111088.b	ENSGT00940000162720.a.b.a	ENSGT00390000001488	ENSGT00940000164817	ENSGT00940000153578.B	ENSGT00940000156435	ENSGT00390000007164	ENSGT00770000120884	ENSGT00940000171636	ENSGT00390000017136	ENSGT00940000156505.t	ENSGT00940000155575.j	ENSGT00940000156833.b	ENSGT00950000183183.a	ENSGT00940000155148.a.a	ENSGT00940000153500.a.b.f ##22	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00390000018512	ENSGT00940000156193	ENSGT00390000004832	ENSGT00440000033742.a.b.d	ENSGT00390000012364.a	ENSGT00940000153469.a.b	ENSGT00940000158025.a.a.b	ENSGT00940000157022	ENSGT00530000064157.b	ENSGT00390000015360	ENSGT00510000048339	ENSGT00390000002127.a	ENSGT00940000158180
Characiphysae	ANCESTRAL SPECIES	98	ENSGT00730000111088.b	ENSGT00940000162720.a.b.a	ENSGT00390000001488	ENSGT00940000164817	ENSGT00940000153578.B.e	ENSGT00940000156435	ENSGT00390000007164	ENSGT00770000120884	ENSGT00940000171636	ENSGT00390000017136	ENSGT00940000156505.t	ENSGT00940000155575.j	ENSGT00940000156833.b	ENSGT00950000183183.a	ENSGT00940000155148.a.a	ENSGT00940000153500.a.b.f ##22	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000153536.a.b.a.b	ENSGT00940000158181.d	ENSGT00390000018512	ENSGT00940000156193	ENSGT00390000004832	ENSGT00440000033742.a.b.d	ENSGT00390000012364.a	ENSGT00940000153469.a.b	ENSGT00940000158025.a.a.b	ENSGT00940000157022	ENSGT00530000064157.b	ENSGT00390000015360	ENSGT00510000048339
Channel catfish	MODERN SPECIES	11	pex11a (ENSIPUG00000013987)	snrnp70 (ENSIPUG00000013994)	Lin7b (ENSIPUG00000014024)	zgc:193811 (ENSIPUG00000014065)	kcnc3a (ENSIPUG00000014086)	ENSIPUG00000014140	ENSIPUG00000014226	tlr-20a (ENSIPUG00000014238)	ENSIPUG00000014259	ENSIPUG00000014438	Bax (ENSIPUG00000014452)	slc16a6b (ENSIPUG00000014470)	Wipi1 (ENSIPUG00000014481)	zgc:86896 (ENSIPUG00000014606)	prkar1a (ENSIPUG00000014651)	rac3 (ENSIPUG00000014714) ##22	gps1 (ENSIPUG00000014781)	dus1l (ENSIPUG00000014839)	csnk1da (ENSIPUG00000014886)	glyr1 (ENSIPUG00000014982)	ppl (ENSIPUG00000015236)	ENSIPUG00000015346	wnt9b (ENSIPUG00000015375)	Gosr2 (ENSIPUG00000015403)	gpatch8 (ENSIPUG00000015431)	ENSIPUG00000015461	ENSIPUG00000015503	baxa (ENSIPUG00000015513)	rps11 (ENSIPUG00000015554)	ENSIPUG00000015654	ENSIPUG00000015667
Characiphysae_b	ANCESTRAL SPECIES	113	ENSGT00730000111088.b	ENSGT00940000162720.a.b.a	ENSGT00390000001488	ENSGT00940000164817	ENSGT00940000153578.B.e	ENSGT00940000156435	ENSGT00390000007164	ENSGT00770000120884	ENSGT00940000171636	ENSGT00390000017136	ENSGT00940000156505.t	ENSGT00940000155575.j	ENSGT00940000156833.b	ENSGT00950000183183.a	ENSGT00940000155148.a.a	ENSGT00940000153500.a.b.f ##22	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000153536.a.b.a.b	ENSGT00940000158181.d	ENSGT00390000018512	ENSGT00940000156193	ENSGT00390000004832	ENSGT00440000033742.a.b.d	ENSGT00390000012364.a	ENSGT00940000153469.a.b	ENSGT00940000158025.a.a.b	ENSGT00940000157022	ENSGT00530000064157.b	ENSGT00390000015360	ENSGT00510000048339
Electric eel	MODERN SPECIES	226	ENSEEEG00000016896	ENSEEEG00000016895	ENSEEEG00000016894	arf2a (ENSEEEG00000016869)	ppl (ENSEEEG00000016830)	glyr1 (ENSEEEG00000016485)	rogdi (ENSEEEG00000016464)	SMIM22 (ENSEEEG00000016461)	COG1 (ENSEEEG00000016455)	rgs9a (ENSEEEG00000016448)	gna13b (ENSEEEG00000016444)	slc16a6b (ENSEEEG00000016443)	wipi1 (ENSEEEG00000016442)	zgc:86896 (ENSEEEG00000016439)	prkar1aa (ENSEEEG00000016352)	rac3a (ENSEEEG00000016298) ##22	gps1 (ENSEEEG00000016227)	dus1l (ENSEEEG00000016224)	csnk1da (ENSEEEG00000016214)	slc16a3a (ENSEEEG00000016213)	engase (ENSEEEG00000016212)	ENSEEEG00000016208	aldh16a1 (ENSEEEG00000016205)	ENSEEEG00000016198	ENSEEEG00000016188	syt5a (ENSEEEG00000016181)	tnnt1 (ENSEEEG00000016168)	pih1d1 (ENSEEEG00000016156)	ENSEEEG00000016152	ENSEEEG00000016149	ENSEEEG00000016147
Characoidei	ANCESTRAL SPECIES	113	ENSGT00730000111088.b	ENSGT00940000162720.a.b.a	ENSGT00390000001488	ENSGT00940000164817	ENSGT00940000153578.B.e	ENSGT00940000156435	ENSGT00390000007164	ENSGT00770000120884	ENSGT00940000171636	ENSGT00390000017136	ENSGT00940000156505.t	ENSGT00940000155575.j	ENSGT00940000156833.b	ENSGT00950000183183.a	ENSGT00940000155148.a.a	ENSGT00940000153500.a.b.f ##22	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000153536.a.b.a.b	ENSGT00940000158181.d	ENSGT00390000018512	ENSGT00940000156193	ENSGT00390000004832	ENSGT00440000033742.a.b.d	ENSGT00390000012364.a	ENSGT00940000153469.a.b	ENSGT00940000158025.a.a.b	ENSGT00940000157022	ENSGT00530000064157.b	ENSGT00390000015360	ENSGT00510000048339
Mexicana tetra	MODERN SPECIES	56	si:dkeyp-72e1.6 (ENSAMXG00000025787)	RRN3 (ENSAMXG00000002704)	ENSAMXG00000041572	ENSAMXG00000010603	ppl (ENSAMXG00000010610)	glyr1 (ENSAMXG00000034442)	rogdi (ENSAMXG00000010616)	ENSAMXG00000010622	COG1 (ENSAMXG00000010625)	rgs9a (ENSAMXG00000010630)	gna13b (ENSAMXG00000010634)	slc16a6b (ENSAMXG00000031691)	wipi1 (ENSAMXG00000041671)	zgc:86896 (ENSAMXG00000039981)	prkar1aa (ENSAMXG00000032920)	rac3a (ENSAMXG00000029839) ##22	gps1 (ENSAMXG00000010650)	dus1l (ENSAMXG00000031331)	csnk1da (ENSAMXG00000035332)	slc16a3a (ENSAMXG00000010666)	engase (ENSAMXG00000010667)	scpep1 (ENSAMXG00000032175)	coil (ENSAMXG00000033981)	rab11fip4a (ENSAMXG00000010675)
Red-bellied piranha	MODERN SPECIES	221												zgc:86896 (ENSPNAG00000004951)	wipi1 (ENSPNAG00000003134)	slc16a6b (ENSPNAG00000014442)	prkar1aa (ENSPNAG00000003120)	rac3a (ENSPNAG00000003110) ##22	gps1 (ENSPNAG00000003092)	dus1l (ENSPNAG00000014263)	csnk1da (ENSPNAG00000014195)	slc16a3a (ENSPNAG00000003037)	engase (ENSPNAG00000014145)	scpep1 (ENSPNAG00000014128)	coil (ENSPNAG00000014104)	rab11fip4a (ENSPNAG00000014084)	suz12a (ENSPNAG00000003005)	crlf3 (ENSPNAG00000003000)	CASKIN1 (ENSPNAG00000013924)	traf7 (ENSPNAG00000013882)	gng13b (ENSPNAG00000013838)	dctn5 (ENSPNAG00000013824)	rpusd1 (ENSPNAG00000013806)
Cyprinoidei	ANCESTRAL SPECIES	1	ENSGT00390000001488	ENSGT00940000164817	ENSGT00940000153578.B	ENSGT00940000156435	ENSGT00390000007164	ENSGT00770000120884	ENSGT00940000171636	ENSGT00390000017136	ENSGT00940000156505.t	ENSGT00940000157054	ENSGT00530000063996.a	ENSGT00940000155575.j	ENSGT00940000156833.b	ENSGT00950000183183.a	ENSGT00940000155148.a.a	ENSGT00940000153500.a.b.f ##22	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000153536.a.b.a.b.a	ENSGT00390000018512	ENSGT00940000156193	ENSGT00390000004832	ENSGT00440000033742.a.b.d	ENSGT00390000012364.a	ENSGT00940000153469.a.b	ENSGT00940000158025.a.a.b	ENSGT00940000157022	ENSGT00530000064157.b	ENSGT00390000015360	ENSGT00510000048339	ENSGT00390000002127.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	116	ENSGT00940000162720.a.b.a.s.b	ENSGT00390000001488.a	ENSGT00940000164817.f	ENSGT00940000153578.B.d	ENSGT00940000156435.j	ENSGT00390000007164.b	ENSGT00940000171636	ENSGT00390000017136	ENSGT00940000156505.t.a	ENSGT00940000157054.u.b.b	ENSGT00940000155575.j.e	ENSGT00940000155575.j.f	ENSGT00940000156833.b.f	ENSGT00950000183183.a.n.a	ENSGT00940000155148.a.a.b	ENSGT00940000153500.a.b.f.a ##22
Cyprininae_a	ANCESTRAL SPECIES	182	ENSGT00730000111088.b.a.b	ENSGT00940000162720.a.b.a.t	ENSGT00390000001488.b	ENSGT00940000164817.e	ENSGT00940000153578.B.c	ENSGT00940000156435.i	ENSGT00390000007164.a	ENSGT00770000120884.a	ENSGT00390000017136.b	ENSGT00940000156505.t.a	ENSGT00940000157054.u.b.b	ENSGT00940000155575.j.f	ENSGT00940000156833.b.f	ENSGT00950000183183.a.n.a	ENSGT00940000155148.a.a.b	ENSGT00940000153500.a.b.f.a ##22
Common carp reference	MODERN SPECIES	3	pdxdc1 (ENSCCRG00000042947)	si:dkeyp-72e1.6 (ENSCCRG00000064560)	ENSCCRG00000033686	ENSCCRG00000051102	ppl (ENSCCRG00000064985)	glyr1 (ENSCCRG00000082387)	rogdi (ENSCCRG00000052653)	SMIM22 (ENSCCRG00000071846)	ENSCCRG00000052660	rgs9a (ENSCCRG00000052667)	gna13b (ENSCCRG00000052683)	slc16a6b (ENSCCRG00000052669)	wipi1 (ENSCCRG00000052674)	zgc:86896 (ENSCCRG00000052675)	prkar1aa (ENSCCRG00000052684)	rac3a (ENSCCRG00000052677) ##22	gps1 (ENSCCRG00000052686)	dus1l (ENSCCRG00000059772)	csnk1da (ENSCCRG00000052691)	slc16a3a (ENSCCRG00000062364)	engase (ENSCCRG00000052693)	scpep1 (ENSCCRG00000052696)	coil (ENSCCRG00000078654)	rab11fip4a (ENSCCRG00000067915)	suz12a (ENSCCRG00000029116)	crlf3 (ENSCCRG00000074771)	ENSCCRG00000000175	traf7 (ENSCCRG00000000252)	gng13b (ENSCCRG00000056562)	dctn5 (ENSCCRG00000000406)	rpusd1 (ENSCCRG00000062828)
Golden-line barbel	MODERN SPECIES	126	ENSSGRG00000051479	si:dkeyp-72e1.6 (ENSSGRG00000051482)	RRN3 (ENSSGRG00000051493)	ENSSGRG00000051509	ppl (ENSSGRG00000051510)	glyr1 (ENSSGRG00000051580)	rogdi (ENSSGRG00000051583)	SMIM22 (ENSSGRG00000051595)	COG1 (ENSSGRG00000051604)	rgs9a (ENSSGRG00000051630)	gna13b (ENSSGRG00000051818)	slc16a6b (ENSSGRG00000051820)	wipi1 (ENSSGRG00000051821)	zgc:86896 (ENSSGRG00000052033)	prkar1aa (ENSSGRG00000052038)	rac3a (ENSSGRG00000052058) ##22	gps1 (ENSSGRG00000052064)	dus1l (ENSSGRG00000052096)	csnk1da (ENSSGRG00000052102)	slc16a3a (ENSSGRG00000052422)	engase (ENSSGRG00000052426)	scpep1 (ENSSGRG00000052455)	coil (ENSSGRG00000052629)	suz12a (ENSSGRG00000052634)	crlf3 (ENSSGRG00000052746)	ENSSGRG00000052747	ENSSGRG00000052749	traf7 (ENSSGRG00000052768)	gng13b (ENSSGRG00000053051)	dctn5 (ENSSGRG00000053052)	rpusd1 (ENSSGRG00000053053)
Cyprininae	ANCESTRAL SPECIES	555											ENSGT00940000156505.t.b	ENSGT00940000157054.u.b.a	ENSGT00940000156833.b.e	ENSGT00950000183183.a.n.b	ENSGT00940000155148.a.a.a	ENSGT00940000153500.a.b.f.b ##22	ENSGT00510000046608.A	ENSGT00550000075089	ENSGT00940000153536.a.b.a.b.a	ENSGT00940000158181.d.b	ENSGT00390000018512.d	ENSGT00940000156193.i	ENSGT00390000004832.v	ENSGT00440000033742.a.b.d.a	ENSGT00390000012364.a.b	ENSGT00940000153469.a.b.t	ENSGT00940000158025.a.a.b.e	ENSGT00940000157022.o	ENSGT00530000064157.b.h
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	3537										COG1 (ENSCARG00000054219)	gna13b (ENSCARG00000054561)	slc16a6b (ENSCARG00000054598)	wipi1 (ENSCARG00000054619)	zgc:86896 (ENSCARG00000054734)	prkar1aa (ENSCARG00000054799)	rac3a (ENSCARG00000055273) ##22	gps1 (ENSCARG00000055402)	dus1l (ENSCARG00000056131)	CSNK1D (ENSCARG00000056383)	slc16a3a (ENSCARG00000056770)	engase (ENSCARG00000056811)	scpep1 (ENSCARG00000057012)	coil (ENSCARG00000058125)	rab11fip4a (ENSCARG00000058177)	ENSCARG00000058545
Goldfish	MODERN SPECIES	2804														ENSCARG00000057850	prkar1aa (ENSCARG00000057751)	rac3a (ENSCARG00000057725) ##22	gps1 (ENSCARG00000057534)	dus1l (ENSCARG00000057328)
Cyprininae_a	ANCESTRAL SPECIES	137	ENSGT00940000162720.a.b.a.s.b	ENSGT00390000001488.a	ENSGT00940000164817.f	ENSGT00940000153578.B.d	ENSGT00940000156435.j	ENSGT00390000007164.b	ENSGT00770000120884.b	ENSGT00940000171636	ENSGT00390000017136.a	ENSGT00940000156505.t.b	ENSGT00940000157054.u.b.a	ENSGT00940000155575.j.e	ENSGT00940000156833.b.e	ENSGT00950000183183.a.n.b	ENSGT00940000155148.a.a.a	ENSGT00940000153500.a.b.f.b ##22	ENSGT00510000046608.A	ENSGT00550000075089.d	ENSGT00940000153536.a.b.a.b.b	ENSGT00940000158181.d.a	ENSGT00390000018512.c	ENSGT00940000156193.j	ENSGT00390000004832.u	ENSGT00440000033742.a.b.d.b	ENSGT00390000012364.a.a	ENSGT00940000153469.a.b.s.a.a	ENSGT00940000153469.a.b.s.b	ENSGT00940000158025.a.a.b.f	ENSGT00940000157022.p	ENSGT00530000064157.b.g	ENSGT00390000015360.e
Golden-line barbel	MODERN SPECIES	301	ENSSGRG00000037484	pdxdc1 (ENSSGRG00000037408)	ENSSGRG00000037401	RRN3 (ENSSGRG00000036883)	ENSSGRG00000036873	ppl (ENSSGRG00000036353)	glyr1 (ENSSGRG00000036296)	ENSSGRG00000036290	rogdi (ENSSGRG00000036196)	COG1 (ENSSGRG00000036008)	rgs9a (ENSSGRG00000036001)	gna13b (ENSSGRG00000035996)	wipi1 (ENSSGRG00000035961)	zgc:86896 (ENSSGRG00000035939)	ENSSGRG00000035938	rac3a (ENSSGRG00000035933) ##22	gps1 (ENSSGRG00000035031)	dus1l (ENSSGRG00000035019)	CSNK1D (ENSSGRG00000034860)	engase (ENSSGRG00000034834)	scpep1 (ENSSGRG00000034424)	rab11fip4a (ENSSGRG00000034381)	suz12a (ENSSGRG00000034261)	crlf3 (ENSSGRG00000034257)	CASKIN1 (ENSSGRG00000034256)	traf7 (ENSSGRG00000033720)	gng13b (ENSSGRG00000033709)	rpusd1 (ENSSGRG00000033707)	ndufab1b (ENSSGRG00000033706)	TNRC6A (ENSSGRG00000033672)	rbbp6 (ENSSGRG00000033671)
Common carp reference	MODERN SPECIES	1	ENSCCRG00000042956	si:dkeyp-72e1.6 (ENSCCRG00000042962)	ENSCCRG00000042996	ENSCCRG00000058614	ppl (ENSCCRG00000064454)	glyr1 (ENSCCRG00000077608)	rogdi (ENSCCRG00000052679)	SMIM22 (ENSCCRG00000065229)	ENSCCRG00000052681	rgs9a (ENSCCRG00000052682)	gna13b (ENSCCRG00000074927)	slc16a6b (ENSCCRG00000052671)	wipi1 (ENSCCRG00000052673)	zgc:86896 (ENSCCRG00000071978)	prkar1aa (ENSCCRG00000061076)	rac3a (ENSCCRG00000078982) ##22	gps1 (ENSCCRG00000051837)	dus1l (ENSCCRG00000052689)	ENSCCRG00000060889	slc16a3a (ENSCCRG00000052692)	engase (ENSCCRG00000023336)	scpep1 (ENSCCRG00000023350)	coil (ENSCCRG00000026168)	ENSCCRG00000058130	rab11fip4a (ENSCCRG00000052703)	suz12a (ENSCCRG00000030954)	crlf3 (ENSCCRG00000029036)	ENSCCRG00000051831	traf7 (ENSCCRG00000051835)	gng13b (ENSCCRG00000077704)	dctn5 (ENSCCRG00000069775)
Zebrafish	MODERN SPECIES	18	ENSDARG00000104457	si:dkeyp-72e1.6 (ENSDARG00000099877)	RRN3 (ENSDARG00000102997)	ENSDARG00000103743	ppl (ENSDARG00000101043)	glyr1 (ENSDARG00000099213)	rogdi (ENSDARG00000104413)	SMIM22 (ENSDARG00000105068)	COG1 (ENSDARG00000105131)	rgs9a (ENSDARG00000037925)	gna13b (ENSDARG00000037924)	slc16a6b (ENSDARG00000060246)	wipi1 (ENSDARG00000040657)	zgc:86896 (ENSDARG00000090369)	prkar1aa (ENSDARG00000076128)	rac3a (ENSDARG00000090062) ##22	gps1 (ENSDARG00000040650)	dus1l (ENSDARG00000089260)	csnk1da (ENSDARG00000008370)	ENSDARG00000110352	slc16a3a (ENSDARG00000028583)	engase (ENSDARG00000010035)	scpep1 (ENSDARG00000040072)	coil (ENSDARG00000040070)	rab11fip4a (ENSDARG00000090170)	suz12a (ENSDARG00000070256)	crlf3 (ENSDARG00000070261)	CASKIN1 (ENSDARG00000046107)	traf7 (ENSDARG00000060207)	gng13b (ENSDARG00000037921)	dctn5 (ENSDARG00000003573)
Clupeiformes	ANCESTRAL SPECIES																	ENSGT00940000153500.a.b.f ##22
Atlantic herring	MODERN SPECIES		KAT7 (ENSCHAG00000006721)	G6PC1 (ENSCHAG00000008572)	aoc2 (ENSCHAG00000008581)	PSME3 (ENSCHAG00000008598)	ENSCHAG00000008794	ENSCHAG00000008827	ARL4D (ENSCHAG00000008844)	ENSCHAG00000008861	RTN4R (ENSCHAG00000008872)	rab11fip4a (ENSCHAG00000008893)	coil (ENSCHAG00000009249)	scpep1 (ENSCHAG00000009274)	engase (ENSCHAG00000010143)	slc16a3a (ENSCHAG00000010213)	ENSCHAG00000010222	rac3a (ENSCHAG00000010289) ##22	gps1 (ENSCHAG00000010411)	dus1l (ENSCHAG00000011056)	RPL3 (ENSCHAG00000011102)	gna13b (ENSCHAG00000011139)	rgs9a (ENSCHAG00000011161)	COG1 (ENSCHAG00000011609)	ENSCHAG00000011935	rogdi (ENSCHAG00000011956)	glyr1 (ENSCHAG00000012153)	ppl (ENSCHAG00000012697)	ENSCHAG00000014283	RRN3 (ENSCHAG00000014388)	si:dkeyp-72e1.6 (ENSCHAG00000015054)	ENSCHAG00000015062	pdxdc1 (ENSCHAG00000015177)
Denticle herring	MODERN SPECIES	17	MPV17L (ENSDCDG00000029757)	pdxdc1 (ENSDCDG00000029239)	gspt1l (ENSDCDG00000028238)	nde1 (ENSDCDG00000028229)	MYH11 (ENSDCDG00000027138)	ABCC1 (ENSDCDG00000019317)	ITPRIPL2 (ENSDCDG00000018282)	SYT17 (ENSDCDG00000018275)	clec19a (ENSDCDG00000018273)	ENSDCDG00000018270	rab40c (ENSDCDG00000018265)	ENSDCDG00000018259	xylt1 (ENSDCDG00000018119)	ENSDCDG00000018112	arl6ip1 (ENSDCDG00000018108)	rac3a (ENSDCDG00000017553) ##22	gps1 (ENSDCDG00000017513)	dus1l (ENSDCDG00000017486)	csnk1da (ENSDCDG00000017398)	slc16a3a (ENSDCDG00000017392)	engase (ENSDCDG00000017384)	scpep1 (ENSDCDG00000017064)	coil (ENSDCDG00000017053)	rab11fip4a (ENSDCDG00000017026)	RTN4R (ENSDCDG00000017020)	pheta2 (ENSDCDG00000017015)	mylpfa (ENSDCDG00000017008)	tbc1d10b (ENSDCDG00000016809)	hsd3b7 (ENSDCDG00000016795)	ENSDCDG00000016792	gcdhb (ENSDCDG00000015785)
Euteleosteomorpha	ANCESTRAL SPECIES	42	ENSGT01030000234862	ENSGT00940000162720.a.b.b	ENSGT00390000001488	ENSGT00940000164817	ENSGT00940000153578.B	ENSGT00940000156435	ENSGT00390000007164	ENSGT00940000171636	ENSGT00390000017136	ENSGT00940000156505.t	ENSGT00940000157054.c.a	ENSGT00940000155575.i.b	ENSGT00940000156833.b	ENSGT00950000183183.a	ENSGT00940000155148.a.a	ENSGT00940000153500.a.b.f ##22
Acanthomorphata	ANCESTRAL SPECIES	210	ENSGT01030000234862	ENSGT00940000162720.a.b.b	ENSGT00390000001488	ENSGT00940000164817	ENSGT00940000153578.B	ENSGT00940000156435	ENSGT00390000007164	ENSGT00940000171636	ENSGT00390000017136	ENSGT00940000156505.t	ENSGT00940000157054.c.a	ENSGT00940000155575.i.b	ENSGT00940000156833.b	ENSGT00950000183183.a	ENSGT00940000155148.a.a	ENSGT00940000153500.a.b.f ##22
Euacanthomorphacea	ANCESTRAL SPECIES	78	ENSGT01030000234862	ENSGT00940000162720.a.b.b	ENSGT00390000001488	ENSGT00940000164817	ENSGT00940000153578.B	ENSGT00940000156435	ENSGT00390000007164	ENSGT00940000171636	ENSGT00390000017136	ENSGT00940000156505.t	ENSGT00940000157054.c.a	ENSGT00940000155575.i.b	ENSGT00940000156833.b	ENSGT00950000183183.a	ENSGT00940000155148.a.a	ENSGT00940000153500.a.b.f ##22
Percomorphaceae	ANCESTRAL SPECIES	49	ENSGT01030000234862	ENSGT00940000162720.a.b.b	ENSGT00390000001488	ENSGT00940000164817	ENSGT00940000153578.B	ENSGT00940000156435	ENSGT00390000007164	ENSGT00940000171636	ENSGT00390000017136	ENSGT00940000156505.t	ENSGT00940000157054.c.a	ENSGT00940000155575.i.b	ENSGT00940000156833.b	ENSGT00950000183183.a	ENSGT00940000155148.a.a	ENSGT00940000153500.a.b.f ##22	ENSGT00940000161341.a.b	ENSGT00940000166248.b	ENSGT00390000016335.g	ENSGT00950000183150.a.a.a.d	ENSGT00940000165190.B	ENSGT00950000183207.b	ENSGT00950000183098.a.a	ENSGT01100000263693	ENSGT01090000260003.a.b.b.a.b	ENSGT00940000164903.b	ENSGT01030000234646.B.a.a.a.a.b	ENSGT00940000153704.B.d	ENSGT00940000157439.a	ENSGT00940000159091	ENSGT00940000157981.a.b
Percomorphaceae_B	ANCESTRAL SPECIES	2	ENSGT01030000234862	ENSGT00940000162720.a.b.b	ENSGT00390000001488	ENSGT00940000164817	ENSGT00940000153578.B	ENSGT00940000156435	ENSGT00390000007164	ENSGT00940000171636	ENSGT00390000017136	ENSGT00940000156505.t	ENSGT00940000157054.c.a	ENSGT00940000155575.i.b	ENSGT00940000156833.b	ENSGT00950000183183.a	ENSGT00940000155148.a.a	ENSGT00940000153500.a.b.f ##22	ENSGT00940000161341.a.b	ENSGT00940000166248.b	ENSGT00390000016335.g	ENSGT00950000183150.a.a.a.d	ENSGT00940000165190.B	ENSGT00950000183207.b	ENSGT00950000183098.a.a	ENSGT01100000263693	ENSGT00940000164903.b	ENSGT01030000234646.B.a.a.a.a.b	ENSGT00940000153704.B.d	ENSGT00940000157439.a	ENSGT00940000159091	ENSGT00940000157981.a.b	ENSGT00940000167564
Percomorphaceae_C	ANCESTRAL SPECIES		ENSGT01030000234862	ENSGT00940000162720.a.b.b	ENSGT00390000001488	ENSGT00940000164817	ENSGT00940000153578.B	ENSGT00940000156435	ENSGT00390000007164	ENSGT00940000171636	ENSGT00390000017136	ENSGT00940000156505.t	ENSGT00940000157054.c.a	ENSGT00940000155575.i.b	ENSGT00940000156833.b	ENSGT00950000183183.a	ENSGT00940000155148.a.a	ENSGT00940000153500.a.b.f ##22	ENSGT00940000161341.a.b	ENSGT00940000166248.b	ENSGT00390000016335.g	ENSGT00950000183150.a.a.a.d	ENSGT00940000165190.B	ENSGT00950000183207.b	ENSGT00950000183098.a.a	ENSGT01100000263693	ENSGT00940000164903.b	ENSGT01030000234646.B.a.a.a.a.b	ENSGT00940000153704.B.d	ENSGT00940000157439.a	ENSGT00940000159091	ENSGT00940000157981.a.b	ENSGT00940000167564
Eupercaria	ANCESTRAL SPECIES	30	ENSGT01030000234862	ENSGT00940000162720.a.b.b	ENSGT00390000001488	ENSGT00940000164817	ENSGT00940000153578.B	ENSGT00940000156435	ENSGT00390000007164	ENSGT00940000171636	ENSGT00390000017136	ENSGT00940000156505.t	ENSGT00940000157054.c.a	ENSGT00940000155575.i.b	ENSGT00940000156833.b	ENSGT00950000183183.a	ENSGT00940000155148.a.a	ENSGT00940000153500.a.b.f ##22	ENSGT00940000161341.a.b	ENSGT00940000166248.b	ENSGT00390000016335.g	ENSGT00950000183150.a.a.a.d	ENSGT00940000165190.B	ENSGT00950000183207.b	ENSGT00950000183098.a.a	ENSGT01090000260003.a.b.b.a.b	ENSGT00940000167671	ENSGT00940000153222.a.b.a	ENSGT00940000160292	ENSGT00950000183205.b.a.b.a.a	ENSGT00940000160271	ENSGT00940000176920	ENSGT00940000158693.A
Eupecaria_A	ANCESTRAL SPECIES	29	ENSGT01030000234862	ENSGT00940000162720.a.b.b	ENSGT00390000001488	ENSGT00940000164817	ENSGT00940000153578.B	ENSGT00940000156435	ENSGT00390000007164	ENSGT00940000171636	ENSGT00390000017136	ENSGT00940000156505.t	ENSGT00940000157054.c.a	ENSGT00940000155575.i.b	ENSGT00940000156833.b	ENSGT00950000183183.a	ENSGT00940000155148.a.a	ENSGT00940000153500.a.b.f ##22	ENSGT00940000161341.a.b	ENSGT00940000166248.b	ENSGT00390000016335.g	ENSGT00950000183150.a.a.a.d	ENSGT00940000165190.B	ENSGT00950000183207.b	ENSGT00950000183098.a.a	ENSGT01090000260003.a.b.b.a.b	ENSGT00940000167671	ENSGT00940000153222.a.b.a	ENSGT00940000160292	ENSGT00950000183205.b.a.b.a.a	ENSGT00940000160271	ENSGT00940000176920	ENSGT00940000158693.A
Eupecaria_B	ANCESTRAL SPECIES		ENSGT00940000162720.a.b.b	ENSGT00390000001488	ENSGT00940000164817	ENSGT00940000153578.B	ENSGT00940000156435	ENSGT00390000007164	ENSGT00770000120884	ENSGT00940000171636	ENSGT00390000017136	ENSGT00940000156505.t	ENSGT00940000157054.c.a	ENSGT00940000155575.i.b	ENSGT00940000156833.b	ENSGT00950000183183.a	ENSGT00940000155148.a.a	ENSGT00940000153500.a.b.f ##22	ENSGT00940000161341.a.b	ENSGT00940000166248.b	ENSGT00390000016335.g	ENSGT00950000183150.a.a.a.d	ENSGT00940000165190.B	ENSGT00950000183207.b	ENSGT00950000183098.a.a	ENSGT01090000260003.a.b.b.a.b	ENSGT00940000164903.b	ENSGT01030000234646.B.a.a.a.a.b	ENSGT00940000153704.B.d	ENSGT00940000157439.a	ENSGT00940000159091	ENSGT00940000157981.a.b	ENSGT00940000167564
Eupecaria_C	ANCESTRAL SPECIES	17	ENSGT00940000162720.a.b.b	ENSGT00390000001488	ENSGT00940000164817	ENSGT00940000153578.B	ENSGT00940000156435	ENSGT00390000007164	ENSGT00770000120884	ENSGT00940000171636	ENSGT00390000017136	ENSGT00940000156505.t	ENSGT00940000157054.c.a	ENSGT00940000155575.i.b	ENSGT00940000156833.b	ENSGT00950000183183.a	ENSGT00940000155148.a.a	ENSGT00940000153500.a.b.f ##22	ENSGT00940000161341.a.b	ENSGT00940000166248.b	ENSGT00390000016335.g	ENSGT00950000183150.a.a.a.d	ENSGT00940000165190.B	ENSGT00950000183207.b	ENSGT00950000183098.a.a	ENSGT01100000263693	ENSGT00940000164903.b	ENSGT01030000234646.B.a.a.a.a.b	ENSGT00940000153704.B.d	ENSGT00940000157439.a	ENSGT00940000159091	ENSGT00940000157981.a.b	ENSGT00940000167564
Gilthead seabream	MODERN SPECIES	15	ENSSAUG00010008570	RRN3 (ENSSAUG00010008550)	ENSSAUG00010008544	ENSSAUG00010008536	ppl (ENSSAUG00010007343)	glyr1 (ENSSAUG00010006716)	rogdi (ENSSAUG00010006416)	SMIM22 (ENSSAUG00010006410)	COG1 (ENSSAUG00010006406)	rgs9a (ENSSAUG00010006330)	gna13a (ENSSAUG00010006321)	SLC16A6 (ENSSAUG00010006319)	wipi1 (ENSSAUG00010005771)	zgc:86896 (ENSSAUG00010005753)	prkar1aa (ENSSAUG00010005702)	rac3a (ENSSAUG00010005677) ##22	coil (ENSSAUG00010005621)	scpep1 (ENSSAUG00010005513)	engase (ENSSAUG00010005503)	ENSSAUG00010005499	CSNK1D (ENSSAUG00010004970)	slc16a3b (ENSSAUG00010004957)	dus1l (ENSSAUG00010004941)	ENSSAUG00010004930	cln3 (ENSSAUG00010004924)	ppp4cb (ENSSAUG00010004908)	aldh3b1 (ENSSAUG00010004557)	rab11fip4a (ENSSAUG00010003756)	ENSSAUG00010003727	igf2bp1 (ENSSAUG00010003494)	prr15la (ENSSAUG00010003469)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	26	ENSGT00940000162720.a.b.b	ENSGT00390000001488	ENSGT00940000164817	ENSGT00940000153578.B	ENSGT00940000156435	ENSGT00390000007164	ENSGT00770000120884	ENSGT00940000171636	ENSGT00390000017136	ENSGT00940000156505.t	ENSGT00940000157054.c.a	ENSGT00940000155575.i.b	ENSGT00940000156833.b	ENSGT00950000183183.a	ENSGT00940000155148.a.a	ENSGT00940000153500.a.b.f ##22	ENSGT00940000161341.a.b	ENSGT00940000166248.b	ENSGT00390000016335.g	ENSGT00950000183150.a.a.a.d	ENSGT00940000165190.B	ENSGT00950000183207.b	ENSGT00950000183098.a.a	ENSGT01090000260003.a.b.b.a.b	ENSGT01100000263693	ENSGT00940000164903.b	ENSGT01030000234646.B.a.a.a.a.b	ENSGT00940000153704.B.d	ENSGT00940000157439.a	ENSGT00940000159091	ENSGT00940000157981.a.b
Large yellow croaker	MODERN SPECIES	483	ENSLCRG00005002498	elob (ENSLCRG00005002492)	RRN3 (ENSLCRG00005002307)	ENSLCRG00005002281	ppl (ENSLCRG00005001263)	glyr1 (ENSLCRG00005001240)	rogdi (ENSLCRG00005001182)	ENSLCRG00005001173	COG1 (ENSLCRG00005001168)	rgs9a (ENSLCRG00005000617)	gna13a (ENSLCRG00005009666)	SLC16A6 (ENSLCRG00005009663)	wipi1 (ENSLCRG00005009626)	zgc:86896 (ENSLCRG00005009617)	prkar1aa (ENSLCRG00005009602)	rac3a (ENSLCRG00005009601) ##22	ARL4D (ENSLCRG00005009599)	ENSLCRG00005009598	ENSLCRG00005009595	G6PC1 (ENSLCRG00005009554)	ENSLCRG00005009553	aoc2 (ENSLCRG00005009552)	PSME3 (ENSLCRG00005009551)	ENSLCRG00005009550	kcnc3a (ENSLCRG00005009547)	pdk2b (ENSLCRG00005009537)	ENSLCRG00005009536	ENSLCRG00005009449	ENSLCRG00005009443	ube2z (ENSLCRG00005009442)	atp5mc1 (ENSLCRG00005009440)
Percomorphaceae_D	ANCESTRAL SPECIES	1	ENSGT01030000234862	ENSGT00940000162720.a.b.b	ENSGT00390000001488	ENSGT00940000164817	ENSGT00940000153578.B	ENSGT00940000156435	ENSGT00390000007164	ENSGT00940000171636	ENSGT00390000017136	ENSGT00940000156505.t	ENSGT00940000157054.c.a	ENSGT00940000155575.i.b	ENSGT00940000156833.b	ENSGT00950000183183.a	ENSGT00940000155148.a.a	ENSGT00940000153500.a.b.f ##22	ENSGT00940000161341.a.b	ENSGT00940000166248.b	ENSGT00390000016335.g	ENSGT00950000183150.a.a.a.d	ENSGT00950000183207.b	ENSGT00950000183098.a.a	ENSGT01090000260003.a.b.b.a.b	ENSGT01100000263693	ENSGT00940000164903.b	ENSGT01030000234646.B.a.a.a.a.b	ENSGT00940000153704.B.d	ENSGT00940000157439.a	ENSGT00940000159091	ENSGT00940000157981.a.b	ENSGT00940000167564
Carangaria	ANCESTRAL SPECIES	4	ENSGT00940000162720.a.b.b	ENSGT00390000001488	ENSGT00940000164817	ENSGT00940000153578.B	ENSGT00940000156435	ENSGT00390000007164	ENSGT00770000120884	ENSGT00940000171636	ENSGT00390000017136	ENSGT00940000156505.t	ENSGT00940000157054.c.a	ENSGT00940000155575.i.b	ENSGT00940000156833.b	ENSGT00950000183183.a	ENSGT00940000155148.a.a	ENSGT00940000153500.a.b.f ##22	ENSGT00940000161341.a.b	ENSGT00940000166248.b	ENSGT00390000016335.g	ENSGT00950000183150.a.a.a.d	ENSGT00950000183207.b	ENSGT00950000183098.a.a	ENSGT01090000260003.a.b.b.a.b	ENSGT01100000263693	ENSGT00940000164903.b	ENSGT01030000234646.B.a.a.a.a.b	ENSGT00940000153704.B.d	ENSGT00940000157439.a	ENSGT00940000159091	ENSGT00940000157981.a.b	ENSGT00940000167564
Carangaria_A	ANCESTRAL SPECIES	46	ENSGT01030000234862	ENSGT00940000162720.a.b.b	ENSGT00390000001488	ENSGT00940000164817	ENSGT00940000153578.B	ENSGT00940000156435	ENSGT00390000007164	ENSGT00770000120884	ENSGT00390000017136	ENSGT00940000156505.t	ENSGT00940000157054.c.a	ENSGT00940000155575.i.b	ENSGT00940000156833.b	ENSGT00950000183183.a	ENSGT00940000155148.a.a	ENSGT00940000153500.a.b.f ##22	ENSGT00940000161341.a.b	ENSGT00940000166248.b	ENSGT00390000016335.g	ENSGT00950000183150.a.a.a.d	ENSGT00950000183207.b	ENSGT00950000183098.a.a	ENSGT01090000260003.a.b.b.a.b	ENSGT00940000164903.b	ENSGT01030000234646.B.a.a.a.a.b	ENSGT00940000153704.B.d	ENSGT00940000157439.a	ENSGT00940000159091	ENSGT00940000157981.a.b	ENSGT00940000167564	ENSGT00940000159029
Barramundi perch	MODERN SPECIES	24	ENSLCAG00010009435	RRN3 (ENSLCAG00010009431)	ENSLCAG00010009426	ENSLCAG00010009418	ppl (ENSLCAG00010009367)	glyr1 (ENSLCAG00010009332)	rogdi (ENSLCAG00010009318)	ENSLCAG00010009314	COG1 (ENSLCAG00010009310)	rgs9a (ENSLCAG00010009293)	GNA13 (ENSLCAG00010009270)	SLC16A6 (ENSLCAG00010009263)	wipi1 (ENSLCAG00010009256)	zgc:86896 (ENSLCAG00010009249)	prkar1aa (ENSLCAG00010009208)	rac3a (ENSLCAG00010009088) ##22	ARL4D (ENSLCAG00010009069)	ENSLCAG00010009060	ENSLCAG00010009039	G6PC1 (ENSLCAG00010009035)	aoc2 (ENSLCAG00010009030)
Pleuronectoidei	ANCESTRAL SPECIES	2	ENSGT00940000155582.q.a	ENSGT00940000162720.a.b.b	ENSGT00390000001488	ENSGT00940000164817	ENSGT00940000153578.B	ENSGT00940000156435	ENSGT00390000007164	ENSGT00940000171636	ENSGT00390000017136	ENSGT00940000156505.t	ENSGT00940000157054.c.a	ENSGT00940000155575.i.b	ENSGT00940000156833.b	ENSGT00950000183183.a	ENSGT00940000155148.a.a	ENSGT00940000153500.a.b.f ##22	ENSGT00940000161341.a.b	ENSGT00940000166248.b	ENSGT00390000016335.g	ENSGT00940000165190.B	ENSGT00950000183207.b	ENSGT01100000263693	ENSGT00940000164903.b	ENSGT01030000234646.B.a.a.a.a.b	ENSGT00940000153704.B.d	ENSGT00940000157439.a	ENSGT00940000159091	ENSGT00940000157981.a.b	ENSGT00940000167564	ENSGT00940000159029	ENSGT00940000161386
Turbot	MODERN SPECIES	10	ENSSMAG00000014467	ENSSMAG00000014782	ENSSMAG00000014774	ENSSMAG00000014760	ENSSMAG00000014716	ppl (ENSSMAG00000014539)	glyr1 (ENSSMAG00000014497)	rogdi (ENSSMAG00000014475)	ENSSMAG00000014443	ENSSMAG00000014404	rgs9a (ENSSMAG00000014378)	ENSSMAG00000014357	ENSSMAG00000014328	zgc:86896 (ENSSMAG00000014288)	prkar1aa (ENSSMAG00000014258)	rac3a (ENSSMAG00000023737) ##22	ENSSMAG00000027628	ENSSMAG00000014218	ENSSMAG00000014192	ENSSMAG00000014155	ENSSMAG00000033016	ENSSMAG00000025727	ENSSMAG00000024659	ENSSMAG00000037115	ENSSMAG00000034966	ENSSMAG00000014122	ENSSMAG00000014116	ENSSMAG00000014103	ENSSMAG00000014085	ENSSMAG00000014029	ENSSMAG00000014012
Pinecone sodierfish	MODERN SPECIES	22	ENSMMDG00005005506	srrm2 (ENSMMDG00005005504)	thoc6 (ENSMMDG00005005308)	ENSMMDG00005005292	anapc2 (ENSMMDG00005004580)	rnf25 (ENSMMDG00005004560)	COG1 (ENSMMDG00005004549)	rgs9a (ENSMMDG00005004127)	gna13a (ENSMMDG00005012705)	SLC16A6 (ENSMMDG00005012701)	wipi1 (ENSMMDG00005012169)	zgc:86896 (ENSMMDG00005012155)	prkar1aa (ENSMMDG00005012103)	ENSMMDG00005012090	ENSMMDG00005012059	rac3a (ENSMMDG00005011960) ##22	gps1 (ENSMMDG00005011524)	ALDOA (ENSMMDG00005011512)	ENSMMDG00005011508	zgc:100868 (ENSMMDG00005011385)	fus (ENSMMDG00005011362)	arl6ip1 (ENSMMDG00005011356)	mvp (ENSMMDG00005009599)	TLCD3B (ENSMMDG00005009556)	nlk1 (ENSMMDG00005009545)	ENSMMDG00005009541	cdipt (ENSMMDG00005009537)	ENSMMDG00005006806	ENSMMDG00005006710	JMJD8 (ENSMMDG00005006706)	STUB1 (ENSMMDG00005006703)
Protacanthopterygii	ANCESTRAL SPECIES	110			ENSGT00940000164817	ENSGT00940000153578.B	ENSGT00940000156435	ENSGT00390000007164	ENSGT00940000171636	ENSGT00390000017136	ENSGT00940000156505.t.d	ENSGT00940000156505.t.c	ENSGT00940000157054.c.a	ENSGT00940000155575.i.b	ENSGT00940000156833.b	ENSGT00950000183183.a	ENSGT00940000155148.a.a	ENSGT00940000153500.a.b.f ##22	ENSGT00510000046608.A.c	ENSGT00550000075089	ENSGT00940000158181.a	ENSGT00940000153536.a.b.b.a.a.b	ENSGT00390000018512	ENSGT00940000156193	ENSGT00390000004832	ENSGT00440000033742.a.b.d	ENSGT00390000012364.a	ENSGT00940000153469.a.b	ENSGT00730000111088.b	ENSGT00390000000111.b.a.b	ENSGT00940000155421.a.b	ENSGT00940000160271	ENSGT00730000111690.B.f.b.a.b
Salmoninae	ANCESTRAL SPECIES	139				ENSGT00940000164817	ENSGT00940000153578.B.g.b	ENSGT00940000156435.l	ENSGT00390000007164	ENSGT00940000171636	ENSGT00390000017136	ENSGT00940000156505.t.c	ENSGT00940000157054.c.a	ENSGT00940000155575.i.b.e	ENSGT00940000156833.b.b	ENSGT00950000183183.a.l	ENSGT00940000155148.a.a	ENSGT00940000153500.a.b.f ##22	ENSGT00510000046608.A.c	ENSGT00550000075089.m	ENSGT00940000158181.a	ENSGT00940000153536.a.b.b.a.a.b	ENSGT00390000018512	ENSGT00940000156193	ENSGT00390000004832	ENSGT00440000033742.a.b.d.f	ENSGT00390000012364.a	ENSGT00940000153469.a.b.y	ENSGT00940000153469.a.b.z.a.a	ENSGT00730000111088.b	ENSGT00390000000111.b.a.b	ENSGT00940000155421.a.b.db.b	ENSGT00940000155421.a.b.db.a
Salmoninae_a	DUPLICATION
Salmoninae_a	ANCESTRAL SPECIES	52	ENSGT00940000153578.B.g.b	ENSGT00940000156435.l	ENSGT00390000007164.c.b	ENSGT00940000171636	ENSGT00390000017136	ENSGT00940000156505.t.c	ENSGT00940000157054.c.a	ENSGT00940000155575.i.b.e.b	ENSGT00940000156833.b.a.a	ENSGT00950000183183.a.k.a.b.a	ENSGT00940000157054.d	ENSGT00940000155575.i.b.f	ENSGT00940000156833.b.b	ENSGT00950000183183.a.l	ENSGT00940000155148.a.a	ENSGT00940000153500.a.b.f.c ##22	ENSGT00510000046608.A.c	ENSGT00550000075089.m	ENSGT00940000158181.a	ENSGT00940000153536.a.b.b.a.a.b.d.b	ENSGT00390000018512.f	ENSGT00940000153536.a.b.b.a.a.b.d.a	ENSGT00390000018512.e	ENSGT00940000156193	ENSGT00390000004832	ENSGT00440000033742.a.b.d.f	ENSGT00390000012364.a	ENSGT00940000153469.a.b.y	ENSGT00730000111088.b	ENSGT00390000000111.b.a.b	ENSGT00940000155421.a.b.db.b
Oncorhynchus	ANCESTRAL SPECIES	124					ENSGT00940000156435.k.a	ENSGT00390000007164.c.b	ENSGT00940000171636	ENSGT00390000017136.o	ENSGT00940000156505.t.d	ENSGT00940000156505.t.c	ENSGT00940000157054.c.a	ENSGT00940000155575.i.b.e.b	ENSGT00940000156833.b.a.a	ENSGT00950000183183.a.k.a.b.a	ENSGT00940000155148.a.a	ENSGT00940000153500.a.b.f.c ##22	ENSGT00510000046608.A.c.c	ENSGT00550000075089.m.a.a	ENSGT00940000158181.a	ENSGT00940000153536.a.b.b.a.a.b.d.a	ENSGT00390000018512.e
Oncorhynchus_a	ANCESTRAL SPECIES	210										ENSGT00940000156505.t.c	ENSGT00940000157054.c.a	ENSGT00940000155575.i.b.e.b	ENSGT00940000156833.b.a.a	ENSGT00950000183183.a.k.a.b.a	ENSGT00940000155148.a.a	ENSGT00940000153500.a.b.f.c ##22	ENSGT00510000046608.A.c.c	ENSGT00550000075089.m.a.a	ENSGT00940000158181.a	ENSGT00940000153536.a.b.b.a.a.b.d.b	ENSGT00390000018512.f
Coho salmon	DUPLICATION
Coho salmon	MODERN SPECIES	35	ENSOKIG00005024562	ENSOKIG00005024571	ppl (ENSOKIG00005024627)	ENSOKIG00005024929	glyr1 (ENSOKIG00005024938)	rogdi (ENSOKIG00005024976)	ENSOKIG00005025006	COG1 (ENSOKIG00005025054)	ENSOKIG00005025153	rgs9a (ENSOKIG00005025164)	gna13a (ENSOKIG00005025192)	SLC16A6 (ENSOKIG00005025220)	wipi1 (ENSOKIG00005025236)	zgc:86896 (ENSOKIG00005025405)	prkar1aa (ENSOKIG00005025442)	rac3a (ENSOKIG00005025599) ##22	gps1 (ENSOKIG00005025641)	dus1l (ENSOKIG00005025763)	SLC16A3 (ENSOKIG00005025799)	CSNK1D (ENSOKIG00005025828)	engase (ENSOKIG00005025903)	SCPEP1 (ENSOKIG00005026056)	coil (ENSOKIG00005026258)	SYT17 (ENSOKIG00005026279)	ENSOKIG00005026369	clec19a (ENSOKIG00005026378)	smg1 (ENSOKIG00005026438)	arl6ip1 (ENSOKIG00005027786)	ENSOKIG00005027821	xylt1 (ENSOKIG00005027856)	rab40c (ENSOKIG00005028257)
Coho salmon	MODERN SPECIES	1205				ppl (ENSOKIG00005026240)	glyr1 (ENSOKIG00005026157)	rogdi (ENSOKIG00005026067)	ENSOKIG00005026033	COG1 (ENSOKIG00005025499)	ENSOKIG00005025458	rgs9a (ENSOKIG00005025388)	GNA13 (ENSOKIG00005025340)	SLC16A6 (ENSOKIG00005025324)	wipi1 (ENSOKIG00005025155)	zgc:86896 (ENSOKIG00005025104)	ENSOKIG00005024890	rac3a (ENSOKIG00005024841) ##22	gps1 (ENSOKIG00005024675)	dus1l (ENSOKIG00005024614)	SLC16A3 (ENSOKIG00005024597)	CSNK1D (ENSOKIG00005024476)	engase (ENSOKIG00005024401)	scpep1 (ENSOKIG00005024130)	coil (ENSOKIG00005024095)
Rainbow trout	MODERN SPECIES	3	ENSOMYG00000070667	ENSOMYG00000071932	ENSOMYG00000055459	ENSOMYG00000062833	ppl (ENSOMYG00000058915)	glyr1 (ENSOMYG00000052924)	rogdi (ENSOMYG00000032116)	ENSOMYG00000052493	ENSOMYG00000058491	rgs9a (ENSOMYG00000051922)	ENSOMYG00000065608	SLC16A6 (ENSOMYG00000016931)	wipi1 (ENSOMYG00000076911)	zgc:86896 (ENSOMYG00000062763)	prkar1aa (ENSOMYG00000052084)	rac3a (ENSOMYG00000066461) ##22	gps1 (ENSOMYG00000061338)	dus1l (ENSOMYG00000016367)	ENSOMYG00000060881	ENSOMYG00000064475	scpep1 (ENSOMYG00000014864)	coil (ENSOMYG00000014905)	rab11fip4a (ENSOMYG00000058609)	ENSOMYG00000075378	suz12a (ENSOMYG00000003517)	crlf3 (ENSOMYG00000048050)	ENSOMYG00000058091	ENSOMYG00000068932	ENSOMYG00000060057	ENSOMYG00000075303	ENSOMYG00000058463
Salmo	ANCESTRAL SPECIES	88												ENSGT00940000155575.i.b.e.b	ENSGT00940000156833.b.b	ENSGT00950000183183.a.l	ENSGT00940000155148.a.a.h	ENSGT00940000153500.a.b.f.c ##22	ENSGT00940000153500.a.b.f.d ##22	ENSGT00510000046608.A.c.e	ENSGT00550000075089.n.a	ENSGT00940000158181.a.e	ENSGT00940000153536.a.b.b.a.a.b.d.a	ENSGT00390000018512.e.b	ENSGT00940000153536.a.b.b.a.a.b.c	ENSGT00390000018512.f	ENSGT00940000156193	ENSGT00390000004832	ENSGT00440000033742.a.b.d.f	ENSGT00390000012364.a.d	ENSGT00940000153469.a.b.z.a.b	ENSGT00940000153469.a.b.z.a.a	ENSGT00730000111088.b.h
Atlantic salmon	MODERN SPECIES	25	ENSSSAG00000085807	ENSSSAG00000082924	ENSSSAG00000101225	ENSSSAG00000104264	ENSSSAG00000083288	ppl (ENSSSAG00000118293)	glyr1 (ENSSSAG00000003019)	rogdi (ENSSSAG00000082876)	ENSSSAG00000044998	rgs9a (ENSSSAG00000053024)	ENSSSAG00000107124	SLC16A6 (ENSSSAG00000096923)	wipi1 (ENSSSAG00000059448)	zgc:86896 (ENSSSAG00000002056)	prkar1aa (ENSSSAG00000004054)	rac3a (ENSSSAG00000096778) ##22	gps1 (ENSSSAG00000003908)	dus1l (ENSSSAG00000108048)	ENSSSAG00000092652	SLC16A3 (ENSSSAG00000085156)	engase (ENSSSAG00000001639)	scpep1 (ENSSSAG00000004112)	coil (ENSSSAG00000004506)	ENSSSAG00000111153	rab11fip4a (ENSSSAG00000002806)	ENSSSAG00000018501	suz12a (ENSSSAG00000045285)	ENSSSAG00000057261	crlf3 (ENSSSAG00000045085)	ENSSSAG00000115690	nde1 (ENSSSAG00000105623)
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000153500.a.b.f.d ##22
Salmo	ANCESTRAL SPECIES	88											ENSGT00940000155575.i.b.e.b	ENSGT00940000156833.b.b	ENSGT00950000183183.a.l	ENSGT00940000155148.a.a.h	ENSGT00940000153500.a.b.f.c ##22	ENSGT00940000153500.a.b.f.d ##22	ENSGT00510000046608.A.c.e	ENSGT00550000075089.n.a	ENSGT00940000158181.a.e	ENSGT00940000153536.a.b.b.a.a.b.d.a	ENSGT00390000018512.e.b	ENSGT00940000153536.a.b.b.a.a.b.c	ENSGT00390000018512.f	ENSGT00940000156193	ENSGT00390000004832	ENSGT00440000033742.a.b.d.f	ENSGT00390000012364.a.d	ENSGT00940000153469.a.b.z.a.b	ENSGT00940000153469.a.b.z.a.a	ENSGT00730000111088.b.h	ENSGT00390000000111.b.a.b
River trout	DUPLICATION
River trout	MODERN SPECIES	25	hgs (ENSSTUG00000018696)	zgc:103625 (ENSSTUG00000023139)	mrpl12 (ENSSTUG00000023151)	SLC25A10 (ENSSTUG00000023178)	ENSSTUG00000023328	ENSSTUG00000023333	ppl (ENSSTUG00000023467)	glyr1 (ENSSTUG00000025838)	rogdi (ENSSTUG00000025967)	COG1 (ENSSTUG00000026209)	gna13a (ENSSTUG00000027973)	SLC16A6 (ENSSTUG00000028002)	wipi1 (ENSSTUG00000028016)	zgc:86896 (ENSSTUG00000028060)	prkar1aa (ENSSTUG00000028080)	rac3a (ENSSTUG00000028257) ##22	gps1 (ENSSTUG00000028281)	ENSSTUG00000028352	ENSSTUG00000028485	ENSSTUG00000028503	ENSSTUG00000028665	ENSSTUG00000028688	ENSSTUG00000028705	ENSSTUG00000028808	ENSSTUG00000028856	ENSSTUG00000028865	ENSSTUG00000028889	ENSSTUG00000028902	ENSSTUG00000028917	ENSSTUG00000029015	ENSSTUG00000029062
River trout	MODERN SPECIES		ENSSTUG00000026540	ENSSTUG00000026555	ENSSTUG00000026565	ppl (ENSSTUG00000026602)	glyr1 (ENSSTUG00000026614)	ENSSTUG00000026672	rogdi (ENSSTUG00000026682)	ENSSTUG00000026711	COG1 (ENSSTUG00000026727)	rgs9a (ENSSTUG00000027099)	GNA13 (ENSSTUG00000027140)	SLC16A6 (ENSSTUG00000027148)	wipi1 (ENSSTUG00000027173)	zgc:86896 (ENSSTUG00000027531)	prkar1aa (ENSSTUG00000027547)	rac3a (ENSSTUG00000027573) ##22	gps1 (ENSSTUG00000027602)	dus1l (ENSSTUG00000027843)	ENSSTUG00000027927	slc16a3b (ENSSTUG00000027932)	CSNK1D (ENSSTUG00000027948)	engase (ENSSTUG00000028047)	scpep1 (ENSSTUG00000028098)	coil (ENSSTUG00000028605)	dus1l (ENSSTUG00000028660)	slc16a3b (ENSSTUG00000028881)	CSNK1D (ENSSTUG00000028913)	engase (ENSSTUG00000028938)	scpep1 (ENSSTUG00000028956)	SUZ12 (ENSSTUG00000029023)	crlf3 (ENSSTUG00000029328)
Oncorhynchus	ANCESTRAL SPECIES	325																ENSGT00940000153500.a.b.f.d ##22	ENSGT00510000046608.A.c.d	ENSGT00550000075089.m.a.b
Rainbow trout	MODERN SPECIES	4	glyr1 (ENSOMYG00000055480)	rogdi (ENSOMYG00000060181)	ENSOMYG00000072145	ENSOMYG00000032073	ENSOMYG00000017217	ENSOMYG00000069751	rgs9a (ENSOMYG00000051004)	ENSOMYG00000077586	ENSOMYG00000064548	SLC16A6 (ENSOMYG00000016935)	wipi1 (ENSOMYG00000055529)	zgc:86896 (ENSOMYG00000016889)	prkar1aa (ENSOMYG00000016897)	ENSOMYG00000056091	ENSOMYG00000047955	rac3a (ENSOMYG00000025629) ##22	gps1 (ENSOMYG00000062042)	dus1l (ENSOMYG00000016387)	ENSOMYG00000016358	ENSOMYG00000052022	engase (ENSOMYG00000071240)	ENSOMYG00000069552	scpep1 (ENSOMYG00000014471)	ENSOMYG00000064785	coil (ENSOMYG00000060050)	rab11fip4a (ENSOMYG00000060820)	suz12a (ENSOMYG00000051569)	ENSOMYG00000074733	ENSOMYG00000068200	crlf3 (ENSOMYG00000003408)	ENSOMYG00000003741
Northern pike	MODERN SPECIES	10	ENSELUG00000008814	ENSELUG00000027271	ENSELUG00000034432	ENSELUG00000010245	ENSELUG00000026985	ENSELUG00000001404	ENSELUG00000031758	ENSELUG00000029937	ENSELUG00000029378	ENSELUG00000027315	ENSELUG00000004083	ENSELUG00000034172	ENSELUG00000029708	ENSELUG00000032619	ENSELUG00000011022	rac3a (ENSELUG00000011048) ##22	gps1 (ENSELUG00000011084)	dus1l (ENSELUG00000011137)	SLC16A3 (ENSELUG00000011173)	CSNK1D (ENSELUG00000011202)	engase (ENSELUG00000011223)	scpep1 (ENSELUG00000011255)	coil (ENSELUG00000011281)	rab11fip4a (ENSELUG00000011308)	suz12a (ENSELUG00000011364)	crlf3 (ENSELUG00000011390)	ENSELUG00000011423	nde1 (ENSELUG00000011454)	HEBP2 (ENSELUG00000011581)	zgc:193811 (ENSELUG00000011614)	ENSELUG00000028984
Osteoglossiformes	ANCESTRAL SPECIES	7	ENSGT00390000008825.b.b	ENSGT00390000009925.b	ENSGT00940000164514.b.a	ENSGT00940000165932	ENSGT00390000012745	ENSGT00940000156964.A	ENSGT00940000156505.s	ENSGT00940000157054.b	ENSGT00530000063996.a	ENSGT00940000155575.h	ENSGT00940000159093	ENSGT00940000156833	ENSGT00940000155148.b	ENSGT00950000182951.A.b	ENSGT00940000154003.B	ENSGT00940000153500.a.b ##22	ENSGT00940000154873	ENSGT00940000160801	ENSGT00510000046608.A	ENSGT01070000253744.a.a.a.b.a.b	ENSGT00550000075089	ENSGT00940000157276.d	ENSGT00940000153251.b.b	ENSGT00940000158181	ENSGT00940000153536.a.b.b.b.a	ENSGT00940000153536.a.b.a.a	ENSGT00940000161333	ENSGT00940000159924.d	ENSGT00940000159339.sb.a	ENSGT00390000006009.a.a.a.c.a	ENSGT00940000159856
Asian bonytongue	MODERN SPECIES	12	ubald2 (ENSSFOG00015000477)	RNF157 (ENSSFOG00015000366)	ENSSFOG00015027477	lrrc59 (ENSSFOG00015026694)	nat9 (ENSSFOG00015000303)	GRIN2C (ENSSFOG00015000225)	rgs9b (ENSSFOG00015000112)	gna13a (ENSSFOG00015027035)	AMZ2 (ENSSFOG00015000091)	SLC16A6 (ENSSFOG00015023461)	arsg (ENSSFOG00015023457)	wipi1 (ENSSFOG00015023436)	prkar1ab (ENSSFOG00015027214)	fam20a (ENSSFOG00015023425)	LRRC45 (ENSSFOG00015023418)	rac3b (ENSSFOG00015023411) ##22	dcxr (ENSSFOG00015023405)	rfng (ENSSFOG00015023392)	gps1 (ENSSFOG00015023374)	ENSSFOG00015025347	dus1l (ENSSFOG00015023351)	ccdc57 (ENSSFOG00015023337)	CCDC57 (ENSSFOG00015023328)	slc16a3a (ENSSFOG00015023324)	ENSSFOG00015021485	csnk1db (ENSSFOG00015023309)	c1qtnf1 (ENSSFOG00015026377)	RBFOX3 (ENSSFOG00015023260)	enpp7.2 (ENSSFOG00015023251)	ENSSFOG00015032634	nog3 (ENSSFOG00015023242)
P. kingsleyae	DUPLICATION
P. kingsleyae	MODERN SPECIES	313	ENSPKIG00000023137	srsf2b (ENSPKIG00000023128)	mettl23 (ENSPKIG00000023121)	mfsd11 (ENSPKIG00000023067)	UBALD2 (ENSPKIG00000023040)	tsen54 (ENSPKIG00000023018)	TMEM104 (ENSPKIG00000022994)	GRIN2C (ENSPKIG00000022964)	COG1 (ENSPKIG00000022943)	rgs9a (ENSPKIG00000022889)	ENSPKIG00000022858	SLC16A6 (ENSPKIG00000022850)	zgc:86896 (ENSPKIG00000022827)	PRKAR1A (ENSPKIG00000022802)	ENSPKIG00000022789	RAC3 (ENSPKIG00000022773) ##22	GPS1 (ENSPKIG00000022726)	CSNK1D (ENSPKIG00000022700)	engase (ENSPKIG00000022668)	RBFOX3 (ENSPKIG00000022633)
P. kingsleyae	MODERN SPECIES	100	ubald2 (ENSPKIG00000008781)	RNF157 (ENSPKIG00000008657)	ENSPKIG00000008603	lrrc59 (ENSPKIG00000008516)	nat9 (ENSPKIG00000008570)	GRIN2C (ENSPKIG00000008448)	rgs9b (ENSPKIG00000008407)	GNA13 (ENSPKIG00000008383)	AMZ2 (ENSPKIG00000008351)	SLC16A6 (ENSPKIG00000008333)	arsg (ENSPKIG00000008309)	WIPI1 (ENSPKIG00000008235)	prkar1ab (ENSPKIG00000008184)	fam20a (ENSPKIG00000008150)	LRRC45 (ENSPKIG00000008103)	rac3b (ENSPKIG00000008073) ##22	dcxr (ENSPKIG00000008044)	sec14l1 (ENSPKIG00000007964)	MGAT5B (ENSPKIG00000007882)	rasd4 (ENSPKIG00000007853)	prpsap1 (ENSPKIG00000007753)	cygb1 (ENSPKIG00000007709)	ENSPKIG00000007680	ENSPKIG00000007664	ENSPKIG00000007650	SPHK1 (ENSPKIG00000007627)	UBE2O (ENSPKIG00000007569)	aanat1 (ENSPKIG00000007540)	RHBDF2 (ENSPKIG00000007473)	acox1 (ENSPKIG00000007125)	ten1 (ENSPKIG00000006975)
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000153500.a.b ##22
Lamprey	MODERN SPECIES	645														ENSPMAG00000003581	ENSPMAG00000003553	ENSPMAG00000003549 ##22
Hagfish	MODERN SPECIES	328	ENSEBUG00000016066	ENSEBUG00000016435	SCYL1 (ENSEBUG00000015714)	ENSEBUG00000004180	ENSEBUG00000003040	PLK1 (ENSEBUG00000009778)	ENSEBUG00000006460	ENSEBUG00000016486	ENSEBUG00000015933	ENSEBUG00000015553	get3 (ENSEBUG00000011082)	ENSEBUG00000004360	ENSEBUG00000007004	ENSEBUG00000009333	ENSEBUG00000003567	rac3a (ENSEBUG00000004976) ##22	ENSEBUG00000005672	ENSEBUG00000001458	ENSEBUG00000010326	ENSEBUG00000002884	ENSEBUG00000010209	ENSEBUG00000003794	ENSEBUG00000008384	ENSEBUG00000010891	ENSEBUG00000008619	ENSEBUG00000001059
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000153500.b ##22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000153500.b ##22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00940000153500.b ##22
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00940000153500.b ##22
Neopterygii	ANCESTRAL SPECIES																	ENSGT00940000153500.b ##22
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000153500.b ##22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00940000153500.b ##22
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00940000153500.b ##22
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00940000153500.b ##22
Euacanthomorphacea	ANCESTRAL SPECIES																	ENSGT00940000153500.b ##22
Percomorphaceae	ANCESTRAL SPECIES																	ENSGT00940000153500.b ##22
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00940000153500.b ##22
Percomorphaceae_C	ANCESTRAL SPECIES																	ENSGT00940000153500.b ##22
Percomorphaceae_D	ANCESTRAL SPECIES																	ENSGT00940000153500.b ##22
Carangaria	ANCESTRAL SPECIES																	ENSGT00940000153500.b ##22
Carangaria_A	ANCESTRAL SPECIES																	ENSGT00940000153500.b ##22
Seriola	ANCESTRAL SPECIES																	ENSGT00940000153500.b ##22
Yellowtail amberjack	MODERN SPECIES	1741																ENSSLDG00000007458 ##22
Ecdysozoa	ANCESTRAL SPECIES																	ENSGT00940000153500 #22
Caenorhabditis elegans	MODERN SPECIES	3	H25K10.2 (WBGene00010412)	srv-11 (WBGene00005722)	H25K10.4 (WBGene00010413)	hpa-1 (WBGene00010414)	irld-39 (WBGene00010415)	srw-61 (WBGene00005808)	F38C2.1 (WBGene00009535)	hlh-17 (WBGene00001961)	hlh-31 (WBGene00009540)	F38C2.4 (WBGene00009536)	F38C2.7 (WBGene00009539)	ccch-2 (WBGene00009537)	clec-191 (WBGene00009538)	srz-75 (WBGene00023517)	srz-72 (WBGene00023514)	rac-2 (WBGene00004287) #22	K03D3.5 (WBGene00010531)	srz-61 (WBGene00010530)	srz-104 (WBGene00043052)	srz-105 (WBGene00044587)	K03D3.2 (WBGene00010528)	srz-74 (WBGene00010527)	srz-71 (WBGene00023513)	srz-38 (WBGene00023508)	C35D6.13 (WBGene00045101)	srh-228 (WBGene00005436)	srh-227 (WBGene00005435)	C35D6.3 (WBGene00007960)	C35D6.4 (WBGene00007961)	Y7A9D.1 (WBGene00012420)	Y65A5A.24 (WBGene00185101)