Hystricomorpha	ANCESTRAL SPECIES	17	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #12	ENSGT00390000004713 #13	ENSGT00940000159899 #14	ENSGT00940000155381 #15	ENSGT00390000015826 #16	ENSGT00940000157605 #17	ENSGT00840000130004 #18	ENSGT00940000154596.b #31	ENSGT00940000155825.h.a #20	ENSGT00390000014156	ENSGT00940000155825.h.b ##20	ENSGT00390000014547.c #21	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00550000074913 #37	ENSGT00940000163734 #36	ENSGT00940000156614.b #35	ENSGT00940000162164 #34	ENSGT00940000158717 #33	ENSGT00950000183060.a.a #32	ENSGT00940000163679
Hystricomorpha_a	ANCESTRAL SPECIES	16	ENSGT00940000153560.b.b.a	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #12	ENSGT00390000004713 #13	ENSGT00940000159899 #14	ENSGT00940000155381 #15	ENSGT00390000015826 #16	ENSGT00940000157605 #17	ENSGT00840000130004 #18	ENSGT00940000154596.b #31	ENSGT00940000155825.h.a #20	ENSGT00390000014547.c #21	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00550000074913 #37	ENSGT00940000163734 #36	ENSGT00940000156614.b #35	ENSGT00940000162164 #34	ENSGT00940000158717 #33	ENSGT00950000183060.a.a #32	ENSGT00940000163679
Guinea pig	MODERN SPECIES	30	BRI3 (ENSCPOG00000025281) #7	TECPR1 (ENSCPOG00000010430) #8	BHLHA15 (ENSCPOG00000033368) #9	LMTK2 (ENSCPOG00000009408) #10	ENSCPOG00000031560 #11	ENSCPOG00000011911 #12	ENSCPOG00000014787 #13	ENSCPOG00000019836 #14	PMS2 (ENSCPOG00000000555) #15	AIMP2 (ENSCPOG00000014855) #16	EIF2AK1 (ENSCPOG00000014860) #17	ANKRD61 (ENSCPOG00000014869) #18	ENSCPOG00000013717 #19	CYTH3 (ENSCPOG00000010827) #20	ENSCPOG00000031545 #21	RAC1 (ENSCPOG00000008590) #22	DAGLB (ENSCPOG00000008596) #23	KDELR2 (ENSCPOG00000036190) #24	GRID2IP (ENSCPOG00000026013) #25	ZDHHC4 (ENSCPOG00000005689) #26	INTS15 (ENSCPOG00000002390) #27	ZNF853 (ENSCPOG00000035682) #28	ZNF316 (ENSCPOG00000008777) #29	ZNF12 (ENSCPOG00000038275) #30	ENSCPOG00000034927 #31	ENSCPOG00000019496 #32	ENSCPOG00000000197 #33	GRIFIN (ENSCPOG00000027408) #34	ENSCPOG00000024469 #35	ENSCPOG00000010266 #36	ENSCPOG00000031410 #37
Hystricomorpha_b	ANCESTRAL SPECIES	55	ENSGT00940000153560.b.b.a	ENSGT00510000048486 #7	ENSGT00510000047886.a #8	ENSGT00940000161824 #9	ENSGT00940000158475 #10	ENSGT00940000161875 #12	ENSGT00390000004713 #13	ENSGT00940000159899 #14	ENSGT00940000155381 #15	ENSGT00390000015826 #16	ENSGT00840000130004 #18	ENSGT00940000157605 #17	ENSGT00940000154596.b #31	ENSGT00940000155825.h.b ##20	ENSGT00390000014547.c #21	ENSGT00940000153500.a.a #22	ENSGT00940000156486 #23	ENSGT00390000004010.a.b.a #24	ENSGT00940000157625.b #25	ENSGT00920000149163 #26	ENSGT00390000011370 #27	ENSGT00940000156663.B #28	ENSGT00940000162728 #29	ENSGT00940000154303.B #30	ENSGT00550000074913 #37	ENSGT00940000163734 #36	ENSGT00940000156614.b #35	ENSGT00940000162164 #34	ENSGT00940000158717 #33	ENSGT00950000183060.a.a #32	ENSGT00940000163679
Long-tailed chinchilla	MODERN SPECIES	167	TECPR1 (ENSCLAG00000006941) #8	BHLHA15 (ENSCLAG00000006581) #9	LMTK2 (ENSCLAG00000005806) #10	ENSCLAG00000007617 #12	ENSCLAG00000006812 #13	ENSCLAG00000004477 #14	ENSCLAG00000009853 #15	AIMP2 (ENSCLAG00000009734) #16	ANKRD61 (ENSCLAG00000008441) #18	EIF2AK1 (ENSCLAG00000007600) #17	ENSCLAG00000006764	USP42 (ENSCLAG00000004585) #31	ENSCLAG00000007268 ##20	ENSCLAG00000007013 ##20	ENSCLAG00000006763 #21	RAC1 (ENSCLAG00000009375) #22	ENSCLAG00000014915	DAGLB (ENSCLAG00000010405) #23	KDELR2 (ENSCLAG00000008164) #24	GRID2IP (ENSCLAG00000004690) #25	ZDHHC4 (ENSCLAG00000005882) #26	INTS15 (ENSCLAG00000005799) #27	ZNF853 (ENSCLAG00000005585) #28	ZNF316 (ENSCLAG00000004965) #29	ZNF12 (ENSCLAG00000007714) #30	EIF3B (ENSCLAG00000006140) #37	ENSCLAG00000005193 #36	CHST12 (ENSCLAG00000005658) #35	GRIFIN (ENSCLAG00000005569) #34	LFNG (ENSCLAG00000005347) #33	TTYH3 (ENSCLAG00000010104) #32
Degu	DUPLICATION
Degu	DUPLICATION
Degu	MODERN SPECIES	91	PRKCSH (ENSODEG00000015657)	ELAVL3 (ENSODEG00000015790)	ZNF653 (ENSODEG00000015477)	ECSIT (ENSODEG00000016279)	CNN1 (ENSODEG00000016009)	ENSODEG00000015688	ACP5 (ENSODEG00000015797)	ENSODEG00000020329	ENSODEG00000015977	ENSODEG00000020296	VAV1 (ENSODEG00000015478)	TRIP10 (ENSODEG00000015929)	GPR108 (ENSODEG00000016288)	C3 (ENSODEG00000015506)	TNFSF14 (ENSODEG00000015436)	ENSODEG00000020289 #22	ENSODEG00000015175	TUBB4A (ENSODEG00000015772)	ENSODEG00000015746	CRB3 (ENSODEG00000015295)	SLC25A23 (ENSODEG00000014916)	SLC25A41 (ENSODEG00000015990)	KHSRP (ENSODEG00000015021)	ENSODEG00000015969	GTF2F1 (ENSODEG00000014900)	PSPN (ENSODEG00000014761)	ALKBH7 (ENSODEG00000015141)	CLPP (ENSODEG00000015485)	ACER1 (ENSODEG00000015726)	MLLT1 (ENSODEG00000014883)	ENSODEG00000015920
Degu	MODERN SPECIES	93	IL1F10 (ENSODEG00000005739)	IL36RN (ENSODEG00000006210)	ENSODEG00000007018	IL36A (ENSODEG00000005630)	ENSODEG00000019269	IL1B (ENSODEG00000006687)	CKAP2L (ENSODEG00000005587)	SLC20A1 (ENSODEG00000006024)	CHCHD5 (ENSODEG00000005670)	POLR1B (ENSODEG00000005501)	TTL (ENSODEG00000007061)	ENSODEG00000007009	ZC3H6 (ENSODEG00000009099)	ENSODEG00000005806	ZC3H8 (ENSODEG00000006594)	ENSODEG00000006298 #22	FBLN7 (ENSODEG00000008566)	TMEM87B (ENSODEG00000006134)	MERTK (ENSODEG00000005950)	BCL2L11 (ENSODEG00000006911)	BUB1 (ENSODEG00000006522)	ENSODEG00000006360	ENSODEG00000005851	ENSODEG00000006127	MALL (ENSODEG00000006386)	MAL (ENSODEG00000006405)	MRPS5 (ENSODEG00000006937)	ZNF2 (ENSODEG00000005837)	PROM2 (ENSODEG00000006749)	KCNIP3 (ENSODEG00000007993)	FAHD2A (ENSODEG00000006155)
Degu	MODERN SPECIES	72	BAIAP2L1 (ENSODEG00000010504)	BRI3 (ENSODEG00000010514) #7	TECPR1 (ENSODEG00000011578) #8	LMTK2 (ENSODEG00000012233) #10	ENSODEG00000011077 #12	ENSODEG00000011251 #13	ENSODEG00000012084 #15	ENSODEG00000011718 #16	EIF2AK1 (ENSODEG00000011509) #17	ENSODEG00000019832	ENSODEG00000012213 #31	ENSODEG00000012217	CYTH3 (ENSODEG00000011710) ##20	ENSODEG00000010243	ENSODEG00000010724 #21	ENSODEG00000010508 #22	DAGLB (ENSODEG00000010099) #23	KDELR2 (ENSODEG00000009858) #24	GRID2IP (ENSODEG00000010098) #25	INTS15 (ENSODEG00000010510) #27	ZNF316 (ENSODEG00000011271) #29	ENSODEG00000010214 #30	ENSODEG00000010666 #30	EIF3B (ENSODEG00000012851) #37	CHST12 (ENSODEG00000019997) #35	GRIFIN (ENSODEG00000012470) #34	LFNG (ENSODEG00000009962) #33	TTYH3 (ENSODEG00000009504) #32	ENSODEG00000012047	GNA12 (ENSODEG00000011099)	CARD11 (ENSODEG00000009936)
Naked mole-rat female	MODERN SPECIES		ENSHGLG00000013637	ENSHGLG00000020676	ENSHGLG00000009254 #12	ENSHGLG00000007267 #13	ENSHGLG00000010064 #14	ENSHGLG00000038861	PMS2 (ENSHGLG00000007741) #15	AIMP2 (ENSHGLG00000041958) #16	ANKRD61 (ENSHGLG00000005518) #18	EIF2AK1 (ENSHGLG00000015194) #17	ENSHGLG00000035813	USP42 (ENSHGLG00000018062) #31	ENSHGLG00000017988 #20	ENSHGLG00000041754 #21	ENSHGLG00000040110	RAC1 (ENSHGLG00000009964) #22	DAGLB (ENSHGLG00000007996) #23	KDELR2 (ENSHGLG00000006270) #24	GRID2IP (ENSHGLG00000009097) #25	ZDHHC4 (ENSHGLG00000006221) #26	INTS15 (ENSHGLG00000012729) #27	ENSHGLG00000044919 ##11	ZNF853 (ENSHGLG00000043485) #28	ZNF316 (ENSHGLG00000006683) #29	ENSHGLG00000049211	ENSHGLG00000014390 #30	ENSHGLG00000015253 #37	ENSHGLG00000048380	ENSHGLG00000015038 #35	ENSHGLG00000015019 #34	ENSHGLG00000038095 #33