Vertebrata	DUPLICATION
Vertebrata	DUPLICATION
Vertebrata	DUPLICATION
Vertebrata	DUPLICATION
Vertebrata	DUPLICATION
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000153421.a.a.a.a.b #22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000153421.a.a.a.a.b #22
Euteleostomi	ANCESTRAL SPECIES	28	ENSGT01050000244840.B	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000164022	ENSGT00940000163186	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722
Sarcopterygii	ANCESTRAL SPECIES	25	ENSGT01050000244840.B	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000162345	ENSGT00940000164022	ENSGT00940000163186	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722
Tetrapoda	ANCESTRAL SPECIES		ENSGT01050000244840.B	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000162345	ENSGT00940000163186	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00950000186462	ENSGT00940000161922.j	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00940000153904.a	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879	ENSGT00940000154433
Amniota	ANCESTRAL SPECIES		ENSGT01050000244840.B	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000162345	ENSGT00940000163186	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00950000186462	ENSGT00940000161922.j	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879
Mammalia	ANCESTRAL SPECIES		ENSGT01050000244840.B	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000162345	ENSGT00940000163186	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00940000161922.j	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879	ENSGT00940000154433.b
Theria	ANCESTRAL SPECIES	1	ENSGT00940000162345	ENSGT00940000163186	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00520000056155	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879
Eutheria	ANCESTRAL SPECIES	26	ENSGT00940000162345	ENSGT00940000163186	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00520000056155	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879
Boreoeutheria	ANCESTRAL SPECIES	11	ENSGT00940000162345	ENSGT00940000163186	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00520000056155	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879
Euarchontoglires	ANCESTRAL SPECIES	11	ENSGT00940000162345	ENSGT00940000163186	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00520000056155	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b.eb.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879
Euarchontoglires_A	ANCESTRAL SPECIES	11	ENSGT00940000162345	ENSGT00940000163186	ENSGT00940000164022	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00520000056155	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b.eb.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879
Glires	ANCESTRAL SPECIES	10	ENSGT00940000162345	ENSGT00940000163186	ENSGT00940000164022	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753.h	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00520000056155	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b.eb.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879
Rodentia	ANCESTRAL SPECIES	10	ENSGT00940000162345	ENSGT00940000163186	ENSGT00940000164022	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753.h	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00520000056155	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b.eb.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879
Rodentia_B	ANCESTRAL SPECIES	95															ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22
Myomorpha	ANCESTRAL SPECIES	109															ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22
Muroidea	ANCESTRAL SPECIES																	ENSGT00940000153421.a.a.a.a.b #22
Muroidea_A	ANCESTRAL SPECIES	7	ENSGT00390000008256.j.b	ENSGT00940000159370	ENSGT00940000156709	ENSGT00940000162424	ENSGT00390000017542	ENSGT00510000048066	ENSGT00870000136506	ENSGT00940000157313	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330	ENSGT00950000183121.b.b.b.b	ENSGT00390000005717.e.b.b.b #20	ENSGT00390000005717.e.b.b.a #19	ENSGT00390000005717.e.b.a #21	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000005717.e.a.b ##21	ENSGT00940000158538 #32	ENSGT00940000163515.i #33	ENSGT00940000159699 #34	ENSGT00940000162825 #35	ENSGT00530000063484.b.b #36	ENSGT00940000154342.C	ENSGT00950000182841.b.a.a.a.j	ENSGT00940000159499	ENSGT01000000214434.B.b.e.a	ENSGT00390000011425.B	ENSGT00520000056155.g.b.b	ENSGT00390000015719.d	ENSGT00940000155485.e	ENSGT00940000164194
Murinae	ANCESTRAL SPECIES	14																ENSGT00940000153421.a.a.a.a.b #22	ENSGT00940000159832 #23	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.b #30	ENSGT00950000182841.b.a.a.a.i.a.b	ENSGT00940000158538 #32	ENSGT00940000163515.i #33	ENSGT00940000159699 #34	ENSGT00940000162825 #35	ENSGT00530000063484.b.b #36	ENSGT00720000109445	ENSGT00940000154342.C	ENSGT00950000182841.b.a.a.a.j	ENSGT00940000159499	ENSGT01000000214434.B.b.e.a	ENSGT00390000011425.B	ENSGT00520000056155.g.b.b
Mus	ANCESTRAL SPECIES	9	ENSGT01100000263574.b.j	ENSGT00940000159803 #7	ENSGT00510000047092 #8	ENSGT00940000158744 #9	ENSGT00390000005685 #10	ENSGT00940000160294 #11	ENSGT00940000154783.f #12	ENSGT00390000012647.d #13	ENSGT00390000006885.a #14	ENSGT00390000000360.r.b.a.a #15	ENSGT00390000018904 #16	ENSGT00940000158132 #17	ENSGT00950000183097.a.a.a #18	ENSGT00390000005717.e.b.b.b #20	ENSGT00390000005717.e.b.a #21	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00940000159832 #23	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.b.f.b ##30	ENSGT00940000163515.j #31	ENSGT00940000158538 #32	ENSGT00940000163515.i #33	ENSGT00940000159699 #34	ENSGT00940000162825 #35	ENSGT00530000063484.b.b #36	ENSGT00940000158553.b.a #37	ENSGT00720000109445	ENSGT00940000154342.C	ENSGT00950000182841.b.a.a.a.j	ENSGT00940000159499	ENSGT01000000214434.B.b.e.a	ENSGT00390000011425.B
Mus_A	ANCESTRAL SPECIES	15	ENSGT00390000001700.a.b.b	ENSGT00940000159803 #7	ENSGT00510000047092 #8	ENSGT00940000158744 #9	ENSGT00390000005685 #10	ENSGT00940000160294 #11	ENSGT00940000154783.f #12	ENSGT00390000012647.d #13	ENSGT00390000006885.a #14	ENSGT00390000000360.r.b.a.a #15	ENSGT00390000018904 #16	ENSGT00940000158132 #17	ENSGT00950000183097.a.a.a #18	ENSGT00390000005717.e.b.b.b #20	ENSGT00390000005717.e.b.a #21	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00940000159832 #23	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.b.f.b ##30	ENSGT00940000163515.j #31	ENSGT00940000158538 #32	ENSGT00940000163515.i #33	ENSGT00940000159699 #34	ENSGT00940000162825 #35	ENSGT00530000063484.b.b #36	ENSGT00940000158553.b.a #37	ENSGT00720000109445	ENSGT00940000154342.C	ENSGT00950000182841.b.a.a.a.j	ENSGT00940000159499	ENSGT01000000214434.B.b.e.a	ENSGT00390000011425.B
Mus_B	ANCESTRAL SPECIES	14	ENSGT00940000159803 #7	ENSGT00510000047092 #8	ENSGT00940000158744 #9	ENSGT00390000005685 #10	ENSGT00940000160294 #11	ENSGT00940000154783.f #12	ENSGT00390000012647.d #13	ENSGT00390000006885.a #14	ENSGT00390000000360.r.b.a.a #15	ENSGT00390000018904 #16	ENSGT00940000158132 #17	ENSGT00950000183097.a.a.a #18	ENSGT00390000005717.e.b.b.a.e.a #19	ENSGT00390000005717.e.b.b.b #20	ENSGT00390000005717.e.b.a #21	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00940000159832 #23	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.b.f.b ##30	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.b.e #30	ENSGT00940000163515.j #31	ENSGT00940000158538 #32	ENSGT00940000163515.i #33	ENSGT00940000159699 #34	ENSGT00940000162825 #35	ENSGT00530000063484.b.b #36	ENSGT00940000158553.b.a #37	ENSGT00720000109445	ENSGT00940000154342.C	ENSGT00950000182841.b.a.a.a.j	ENSGT00940000159499	ENSGT01000000214434.B.b.e.a
Mouse	MODERN SPECIES	37	Gab3 (ENSMUSG00000032750) #7	Dkc1 (ENSMUSG00000031403) #8	Mpp1 (ENSMUSG00000031402) #9	Smim9 (ENSMUSG00000073094) #10	F8 (ENSMUSG00000031196) #11	Fundc2 (ENSMUSG00000031198) #12	Cmc4 (ENSMUSG00000090110) #13	Mtcp1 (ENSMUSG00000031200) #14	Brcc3 (ENSMUSG00000031201) #15	Vbp1 (ENSMUSG00000031197) #16	Rab39b (ENSMUSG00000031202) #17	Pls3 (ENSMUSG00000016382) #18	Cldn34b3 (ENSMUSG00000071738) #19	Cldn34b4 (ENSMUSG00000073085) #20	Cldn34d (ENSMUSG00000079525) #21	Tbl1x (ENSMUSG00000025246) #22	Prkx (ENSMUSG00000035725) #23	Pbsn (ENSMUSG00000000003) #24	Gm14744 (ENSMUSG00000079522) #25	5430402E10Rik (ENSMUSG00000044121) #26	Obp1a (ENSMUSG00000067684) #27	Gm5938 (ENSMUSG00000079521) #28	Obp1b (ENSMUSG00000067679) #29	Gm14743 (ENSMUSG00000079519) #30	4930480E11Rik (ENSMUSG00000035651) #31	Prrg1 (ENSMUSG00000047996) #32	Fam47c (ENSMUSG00000078315) #33	Cfap47 (ENSMUSG00000073077) #34	Mageb16 (ENSMUSG00000046942) #35	Tmem47 (ENSMUSG00000025666) #36	4930595M18Rik (ENSMUSG00000060673) #37
Mus_C	ANCESTRAL SPECIES																	ENSGT00940000153421.a.a.a.a.b #22
Steppe mouse	MODERN SPECIES	1967																Tbl1x (ENSMSIG00000031586) #22
spretus	MODERN SPECIES	19	Mpp1 (MGP_SPRETEiJ_G0034352) #9	Smim9 (MGP_SPRETEiJ_G0034353) #10	F8 (MGP_SPRETEiJ_G0034354) #11	Fundc2 (MGP_SPRETEiJ_G0034355) #12	Cmc4 (MGP_SPRETEiJ_G0034356) #13	Mtcp1 (MGP_SPRETEiJ_G0034357) #14	Brcc3 (MGP_SPRETEiJ_G0034358) #15	Vbp1 (MGP_SPRETEiJ_G0034359) #16	Rab39b (MGP_SPRETEiJ_G0034360) #17	Pls3 (MGP_SPRETEiJ_G0034361) #18	MGP_SPRETEiJ_G0034362 #19	MGP_SPRETEiJ_G0034363 #19	MGP_SPRETEiJ_G0034364 #19	Cldn34b4 (MGP_SPRETEiJ_G0034365) #20	Cldn34d (MGP_SPRETEiJ_G0034366) #21	Tbl1x (MGP_SPRETEiJ_G0034367) #22	Prkx (MGP_SPRETEiJ_G0034368) #23	MGP_SPRETEiJ_G0034369 ##30	MGP_SPRETEiJ_G0034370 #30	MGP_SPRETEiJ_G0034371 #30	4930480E11Rik (MGP_SPRETEiJ_G0034372) #31	Prrg1 (MGP_SPRETEiJ_G0034373) #32	Fam47c (MGP_SPRETEiJ_G0034374) #33	MGP_SPRETEiJ_G0034375 #34	Tmem47 (MGP_SPRETEiJ_G0034376) #36	4930595M18Rik (MGP_SPRETEiJ_G0034377) #37	Dmd (MGP_SPRETEiJ_G0034378)	Tsga8 (MGP_SPRETEiJ_G0034379)	Fthl17a (MGP_SPRETEiJ_G0034380)	MGP_SPRETEiJ_G0034381	Gk (MGP_SPRETEiJ_G0034382)
Ryukyu mouse	MODERN SPECIES	19	Ikbkg (MGP_CAROLIEiJ_G0033187)	G6pdx (MGP_CAROLIEiJ_G0033188)	Or7r1 (MGP_CAROLIEiJ_G0033189)	Or13ae2 (MGP_CAROLIEiJ_G0033190)	Dkc1 (MGP_CAROLIEiJ_G0033191) #8	Mpp1 (MGP_CAROLIEiJ_G0033192) #9	Smim9 (MGP_CAROLIEiJ_G0033193) #10	F8 (MGP_CAROLIEiJ_G0033194) #11	Fundc2 (MGP_CAROLIEiJ_G0033195) #12	Cmc4 (MGP_CAROLIEiJ_G0033196) #13	Mtcp1 (MGP_CAROLIEiJ_G0033197) #14	MGP_CAROLIEiJ_G0033198 ##15	Pls3 (MGP_CAROLIEiJ_G0033199) #18	Cldn34b4 (MGP_CAROLIEiJ_G0033200) #20	Cldn34d (MGP_CAROLIEiJ_G0033201) #21	Tbl1x (MGP_CAROLIEiJ_G0033202) #22	Prkx (MGP_CAROLIEiJ_G0033203) #23	Pbsn (MGP_CAROLIEiJ_G0033204) #24	MGP_CAROLIEiJ_G0033206 #26	MGP_CAROLIEiJ_G0033205 #26	Prrg1 (MGP_CAROLIEiJ_G0033207) #32	Fam47c (MGP_CAROLIEiJ_G0033208) #33	MGP_CAROLIEiJ_G0033209 #34	Mageb16 (MGP_CAROLIEiJ_G0033210) #35	Tmem47 (MGP_CAROLIEiJ_G0033211) #36	MGP_CAROLIEiJ_G0033212 #37	Dmd (MGP_CAROLIEiJ_G0033213)	MGP_CAROLIEiJ_G0033214	Fthl17a (MGP_CAROLIEiJ_G0033215)	MGP_CAROLIEiJ_G0033216	Gk (MGP_CAROLIEiJ_G0033217)
Shrew mouse	MODERN SPECIES	23	G6pdx (MGP_PahariEiJ_G0031731)	Or7r1 (MGP_PahariEiJ_G0031732)	Or13ae2 (MGP_PahariEiJ_G0031733)	Gab3 (MGP_PahariEiJ_G0031734) #7	Dkc1 (MGP_PahariEiJ_G0031735) #8	Mpp1 (MGP_PahariEiJ_G0031736) #9	Smim9 (MGP_PahariEiJ_G0031737) #10	F8 (MGP_PahariEiJ_G0031738) #11	Fundc2 (MGP_PahariEiJ_G0031739) #12	Cmc4 (MGP_PahariEiJ_G0031740) #13	Mtcp1 (MGP_PahariEiJ_G0031741) #14	Brcc3 (MGP_PahariEiJ_G0031742) #15	Pls3 (MGP_PahariEiJ_G0031743) #18	Cldn34b4 (MGP_PahariEiJ_G0031744) #20	Cldn34d (MGP_PahariEiJ_G0031745) #21	Tbl1x (MGP_PahariEiJ_G0031746) #22	Prkx (MGP_PahariEiJ_G0031747) #23	Pbsn (MGP_PahariEiJ_G0031748) #24	MGP_PahariEiJ_G0031749 #28	Prrg1 (MGP_PahariEiJ_G0031750) #32	Fam47c (MGP_PahariEiJ_G0031751) #33	MGP_PahariEiJ_G0031752 #34	Mageb16 (MGP_PahariEiJ_G0031753) #35	Tmem47 (MGP_PahariEiJ_G0031754) #36	4930595M18Rik (MGP_PahariEiJ_G0031755) #37	Dmd (MGP_PahariEiJ_G0031756)	Fthl17a (MGP_PahariEiJ_G0031757)	MGP_PahariEiJ_G0031758	Gk (MGP_PahariEiJ_G0031759)	Tasl (MGP_PahariEiJ_G0031760)	Nr0b1 (MGP_PahariEiJ_G0031761)
Rat	MODERN SPECIES	46	Prdx4 (ENSRNOG00000003763)	Acot9 (ENSRNOG00000003782)	LOC102557137 (ENSRNOG00000059697)	Sat1 (ENSRNOG00000003809)	Cldn34b (ENSRNOG00000071107) #19	Magea10-ps4 (ENSRNOG00000066349)	ENSRNOG00000068897	Magea10-ps5 (ENSRNOG00000064790)	LOC100362173 (ENSRNOG00000029158) #20	LOC680190 (ENSRNOG00000065503) #19	AABR07038250.1 (ENSRNOG00000003860)	ENSRNOG00000064007	Cldn34d (ENSRNOG00000043402) #21	LOC317456 (ENSRNOG00000003883)	AABR07038269.1 (ENSRNOG00000050081)	Tbl1x (ENSRNOG00000003686) #22	Cldn34e (ENSRNOG00000026351) ##21	Bnip3-ps3 (ENSRNOG00000065427)	Prkx (ENSRNOG00000060168) #23	Pbsn (ENSRNOG00000003713)	Obp1f (ENSRNOG00000063224) #26	Obp1f (ENSRNOG00000062551) #26	Magea4 (ENSRNOG00000062420)	Ptges3l1 (ENSRNOG00000060486)	Sts (ENSRNOG00000032487)	Pnpla4 (ENSRNOG00000026157)	RGD1563378 (ENSRNOG00000067596)	Prrg1 (ENSRNOG00000026044) #32	ENSRNOG00000064865	Fam47a (ENSRNOG00000003836) #33	Cfap47 (ENSRNOG00000030048) #34
Cricetidae	ANCESTRAL SPECIES	8	ENSGT00390000008256.j.b	ENSGT00940000159370	ENSGT00940000156709	ENSGT00940000162424	ENSGT00390000017542	ENSGT00510000048066	ENSGT00870000136506.cc.a	ENSGT00940000157313	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330	ENSGT00950000183121.b.b.b.b	ENSGT00390000005717.e.b.b.b #20	ENSGT00390000005717.e.b.b.a #19	ENSGT00390000005717.e.b.a #21	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00940000159832 #23	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.d #24	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.a #26	ENSGT00940000158538 #32	ENSGT00940000163515.i #33	ENSGT00940000159699 #34	ENSGT00940000162825 #35	ENSGT00940000162492.f	ENSGT00530000063484.b.b #36	ENSGT00940000154342.C	ENSGT00950000182841.b.a.a.a.j	ENSGT00940000159499	ENSGT01000000214434.B.b.e.a	ENSGT00390000011425.B	ENSGT00520000056155.g.b.b
Cricetidae_B	ANCESTRAL SPECIES	36	ENSGT00390000008256.j.a.a	ENSGT00940000159370	ENSGT00940000156709	ENSGT00940000162424	ENSGT00390000017542	ENSGT00510000048066	ENSGT00870000136506.cc.a	ENSGT00940000157313	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330	ENSGT00950000183121.b.b.b.b	ENSGT00390000005717.e.b.b.b #20	ENSGT00390000005717.e.b.b.a #19	ENSGT00390000005717.e.b.a #21	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00940000159832 #23	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.d #24	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.b #30	ENSGT00940000158538 #32	ENSGT00940000163515.i #33	ENSGT00940000159699 #34	ENSGT00940000162825 #35	ENSGT00940000162492.f	ENSGT00530000063484.b.b #36	ENSGT01090000260076.b.b	ENSGT00940000155485.f.b	ENSGT00940000155485.f.a.a	ENSGT00940000164194	ENSGT00940000155485.e	ENSGT00390000015719.d
Northern American deer mouse	MODERN SPECIES	475	Sms (ENSPEMG00000003756)	Phex (ENSPEMG00000017527)	Ptchd1 (ENSPEMG00000024561)	Prdx4 (ENSPEMG00000015131)	ENSPEMG00000017644	ENSPEMG00000028779	ENSPEMG00000002650	Sat1 (ENSPEMG00000001319)	ENSPEMG00000025993 #21	ENSPEMG00000026202 #19	Cldn34b4 (ENSPEMG00000003717) #20	ENSPEMG00000026374 #19	ENSPEMG00000025316	ENSPEMG00000025248	ENSPEMG00000029386 #21	Tbl1x (ENSPEMG00000017480) #22	ENSPEMG00000030079 ##21	Prkx (ENSPEMG00000030408) #23	Pbsn (ENSPEMG00000012253) #24	ENSPEMG00000023281	ENSPEMG00000027218	ENSPEMG00000015794 #26	ENSPEMG00000024840	ENSPEMG00000023943 #30	ENSPEMG00000030251	4930480E11Rik (ENSPEMG00000028721) #31	Prrg1 (ENSPEMG00000030282) #32	Fam47c (ENSPEMG00000030109) #33	Cfap47 (ENSPEMG00000022325) #34	ENSPEMG00000028268	Mageb16 (ENSPEMG00000023768) #35
Prairie vole	MODERN SPECIES	360	Srpx2 (ENSMOCG00000003969)	Tspan6 (ENSMOCG00000001068)	Tnmd (ENSMOCG00000000192)	Pcdh19 (ENSMOCG00000013710)	ENSMOCG00000016427	Diaph2 (ENSMOCG00000004544)	ENSMOCG00000008368	ENSMOCG00000018722	Prrg1 (ENSMOCG00000015594) #32	ENSMOCG00000019110	Cfap47 (ENSMOCG00000020168) #34	ENSMOCG00000018300	Mageb16 (ENSMOCG00000002574) #35	ENSMOCG00000019029	ENSMOCG00000013562	Tbl1x (ENSMOCG00000002063) #22	Prkx (ENSMOCG00000003139) #23	Pbsn (ENSMOCG00000005173) #24	ENSMOCG00000019602 #30	Msn (ENSMOCG00000010407)	Vsig4 (ENSMOCG00000000197)	Hsf3 (ENSMOCG00000003224)	Heph (ENSMOCG00000017685)	Gpr165 (ENSMOCG00000003694)	Pgr15l (ENSMOCG00000004906)	Eda2r (ENSMOCG00000020804)	ENSMOCG00000017157	ENSMOCG00000001177	ENSMOCG00000018755	Ophn1 (ENSMOCG00000011502)	Yipf6 (ENSMOCG00000004509)
Cricetinae	ANCESTRAL SPECIES	17	ENSGT00940000155886	ENSGT00950000183163.b	ENSGT00950000182941.b.b	ENSGT00390000008256.j.b	ENSGT00940000159370	ENSGT00940000156709	ENSGT00940000162424	ENSGT00390000017542	ENSGT00510000048066	ENSGT00870000136506.cc.a	ENSGT00940000157313	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330	ENSGT00950000183121.b.b.b.b	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00940000159832 #23	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.d #24	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.a #26	ENSGT00940000158538 #32	ENSGT00940000162492.f	ENSGT00940000159699 #34	ENSGT00940000162825 #35	ENSGT00530000063484.b.b #36	ENSGT00940000154342.C	ENSGT00950000182841.b.a.a.a.j	ENSGT00940000159499	ENSGT01000000214434.B.b.e.a	ENSGT00390000011425.B	ENSGT00390000015719.d	ENSGT01090000260076.b.b
Golden Hamster	MODERN SPECIES	695	Nup155 (ENSMAUG00000003381)	Wdr70 (ENSMAUG00000007958)	Gdnf (ENSMAUG00000019401)	Egflam (ENSMAUG00000015382)	Lifr (ENSMAUG00000015733)	Osmr (ENSMAUG00000019728)	Rictor (ENSMAUG00000013015)	Fyb (ENSMAUG00000001181)	C9 (ENSMAUG00000018301)	ENSMAUG00000015397	Ptger4 (ENSMAUG00000014264)	Ptchd1 (ENSMAUG00000002646)	Prdx4 (ENSMAUG00000021607)	ENSMAUG00000008759	Sat1 (ENSMAUG00000019369)	Tbl1x (ENSMAUG00000006903) #22	ENSMAUG00000016228 ##21	ENSMAUG00000018492	Prkx (ENSMAUG00000016058) #23	Pbsn (ENSMAUG00000012035) #24
Chinese hamster chok1gshd	MODERN SPECIES	230	Smpx (ENSCGRG00001020401)	MBTPS2 (ENSCGRG00001018020)	ENSCGRG00001000646	Phex (ENSCGRG00001019759)	ENSCGRG00001015986	ENSCGRG00001015828	Ptchd1 (ENSCGRG00001010854)	Prdx4 (ENSCGRG00001009299)	ENSCGRG00001000350	SAT1 (ENSCGRG00001022103)	ENSCGRG00001013998 #19	Cldn34d (ENSCGRG00001014236) #21	ENSCGRG00001013899	ENSCGRG00001017212	ENSCGRG00001013770	Tbl1x (ENSCGRG00001016098) #22	Prkx (ENSCGRG00001011584) #23	Pbsn (ENSCGRG00001011020) #24	ENSCGRG00001000213 #26	ENSCGRG00001019539 #30	ENSCGRG00001017585 #30	ENSCGRG00001000265 #30	ENSCGRG00001019344	Prrg1 (ENSCGRG00001018689) #32	ENSCGRG00001016254	Fam47c (ENSCGRG00001013363) #33	ENSCGRG00001015309	ENSCGRG00001013088	Cfap47 (ENSCGRG00001011946) #34	Mageb16 (ENSCGRG00001005887) #35	ENSCGRG00001013660
Upper Galilee mountains blind mole rat	MODERN SPECIES	1370																Tbl1x (ENSNGAG00000000328) #22
Lesser Egyptian jerboa	MODERN SPECIES	147														ENSJJAG00000003177	ENSJJAG00000004898	Tbl1x (ENSJJAG00000006406) #22	ENSJJAG00000006859	ENSJJAG00000007541	ENSJJAG00000008028	ENSJJAG00000009450	Sh3kbp1 (ENSJJAG00000011003)	Map3k15 (ENSJJAG00000012581)	Pdha1 (ENSJJAG00000013156)	Adgrg2 (ENSJJAG00000016266)	ENSJJAG00000000145	Ppef1 (ENSJJAG00000000417)	Rs1 (ENSJJAG00000000704)	Cdkl5 (ENSJJAG00000011323)	Rai2 (ENSJJAG00000011458)	Nhs (ENSJJAG00000012415)	ENSJJAG00000012765
Rodentia_A	ANCESTRAL SPECIES	9	ENSGT00940000162345	ENSGT00940000163186	ENSGT00940000164022	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753.h	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b.eb.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879	ENSGT00940000154433.a.a
Sciuridae	ANCESTRAL SPECIES	56	ENSGT00940000162345	ENSGT00940000164022	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT01050000244868.a.a.a.b.a.b.a.a.b #30	ENSGT00940000156607.a.a	ENSGT00390000014753.h	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00940000155202.i.a	ENSGT00940000154443.b.b	ENSGT00940000155375.d
Marmotini	ANCESTRAL SPECIES	94	ENSGT00440000039314.a.f	ENSGT00940000161561	ENSGT00940000164022	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000162925	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT01050000244868.a.a.a.b.a.b.a.a.b #30	ENSGT00940000156607.a.a	ENSGT00390000014753.h	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00940000155202.i.a	ENSGT00940000154443.b.b	ENSGT00940000155375.d
Marmotini_b	ANCESTRAL SPECIES	179	ENSGT01050000244840.B	ENSGT00440000039314.a.f	ENSGT00940000161561	ENSGT00940000164022	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000159832 #23	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.j.a #30	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.i #30	ENSGT00940000156607.a.a	ENSGT00390000014753.h	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21
Squirrel	MODERN SPECIES	244	ENSSTOG00000025091	CD99 (ENSSTOG00000021254)	ARSD (ENSSTOG00000019946)	ENSSTOG00000024642	ENSSTOG00000034793	ENSSTOG00000029621	PRKX (ENSSTOG00000022705) #23	ENSSTOG00000020714 #30	ENSSTOG00000025226 #30	ENSSTOG00000028400 #30	ENSSTOG00000020015 #30	ENSSTOG00000023040	STS (ENSSTOG00000020247)	PNPLA4 (ENSSTOG00000024808)	ANOS1 (ENSSTOG00000000380)	ENSSTOG00000014293 #22	GPR143 (ENSSTOG00000014309)	SHROOM2 (ENSSTOG00000005794)
Arctic ground squirrel	MODERN SPECIES	629																ENSUPAG00010011802 #22	GPR143 (ENSUPAG00010011834)	SHROOM2 (ENSUPAG00010011844)	ENSUPAG00010011862 #21
Alpin marmot	MODERN SPECIES	102							ENSMMMG00000024654	ARSH (ENSMMMG00000024653)	MXRA5 (ENSMMMG00000024652)	PRKX (ENSMMMG00000024651) #23	ENSMMMG00000024650	PUDP (ENSMMMG00000024649)	STS (ENSMMMG00000024648)	PNPLA4 (ENSMMMG00000024647)	ANOS1 (ENSMMMG00000024646)	ENSMMMG00000024644 #22	GPR143 (ENSMMMG00000024643)	ENSMMMG00000024641	ENSMMMG00000024640	ENSMMMG00000024639 #21	UTY (ENSMMMG00000022708)	ENSMMMG00000022521	DDX3Y (ENSMMMG00000022509)	USP9Y (ENSMMMG00000022494)	ENSMMMG00000022486
Eurasian red squirrel	MODERN SPECIES	156	ASMT (ENSSVLG00005024679)	DHRSX (ENSSVLG00005024652)	ARSD (ENSSVLG00005024327)	ARSL (ENSSVLG00005024133)	ARSH (ENSSVLG00005024093)	MXRA5 (ENSSVLG00005024063)	PRKX (ENSSVLG00005024043) #23	ENSSVLG00005024020 #30	ENSSVLG00005023971	PUDP (ENSSVLG00005023945)	STS (ENSSVLG00005023818)	PNPLA4 (ENSSVLG00005023753)	ENSSVLG00005023735	ENSSVLG00005023716	ANOS1 (ENSSVLG00005023647)	ENSSVLG00005023601 #22	GPR143 (ENSSVLG00005023537)	ENSSVLG00005023499	ENSSVLG00005023472	ENSSVLG00005023446 #21	ENSSVLG00005023419 #21	WWC3 (ENSSVLG00005023378)	CLCN4 (ENSSVLG00005023297)	ENSSVLG00005023260	MID1 (ENSSVLG00005023238)	ENSSVLG00005023195	ENSSVLG00005023027	ENSSVLG00005022888	MSL3 (ENSSVLG00005022550)	FRMPD4 (ENSSVLG00005021689)	PRPS2 (ENSSVLG00005021523)
Hystricomorpha	ANCESTRAL SPECIES	67	ENSGT00940000163186	ENSGT00940000154344.b	ENSGT00510000049811	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000162925	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT01050000244868.a.a.a.b.a.b.a.a.b #30	ENSGT01030000235420	ENSGT00940000156607.a.a	ENSGT00390000014753.h	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00520000056155
Naked mole-rat female	MODERN SPECIES	30	ENSHGLG00000046568	ENSHGLG00000041141	ENSHGLG00000045286	ENSHGLG00000013283	ENSHGLG00000012945	ENSHGLG00000015915	ENSHGLG00000039683	ENSHGLG00000015869	ENSHGLG00000046086	MYRIP (ENSHGLG00000033941)	EIF1B (ENSHGLG00000049723)	ENTPD3 (ENSHGLG00000015750)	RPL14 (ENSHGLG00000048756)	ENSHGLG00000034341	ENSHGLG00000014689	ENSHGLG00000000673 #22	ENSHGLG00000000693	ENSHGLG00000006868	ACOT12 (ENSHGLG00000006134)	ZCCHC9 (ENSHGLG00000041209)	CKMT2 (ENSHGLG00000005442)	ENSHGLG00000004494	ENSHGLG00000039829	ENSHGLG00000047767	ENSHGLG00000050164	FAM151B (ENSHGLG00000009614)	ENSHGLG00000048104	ENSHGLG00000016542	ENSHGLG00000037044	ENSHGLG00000016331	ENSHGLG00000012824
Hystricomorpha_a	ANCESTRAL SPECIES	82	ENSGT00940000154287.a	ENSGT00510000049974	ENSGT00520000055993.f	ENSGT00440000039314.a.e.a.a	ENSGT00940000161561	ENSGT00940000161628	ENSGT00940000163319	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.e #30	ENSGT00940000156607.a.a	ENSGT00390000014753.h	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00520000056155
Guinea pig	MODERN SPECIES	126																ENSCPOG00000008086 #22	GPR143 (ENSCPOG00000007501)	ENSCPOG00000010309	ENSCPOG00000037460	ANOS1 (ENSCPOG00000013143)
Hystricomorpha_b	ANCESTRAL SPECIES	116	ENSGT00940000154287.a	ENSGT00510000049974	ENSGT00520000055993.f	ENSGT00440000039314.a.e.a.a	ENSGT00940000161561	ENSGT00940000161628	ENSGT00940000163319	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.e #30	ENSGT00940000156607.a.a	ENSGT00390000014753.h	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212
Long-tailed chinchilla	MODERN SPECIES	206	SHOX (ENSCLAG00000000063)	ENSCLAG00000000068	ENSCLAG00000000101	ENSCLAG00000000107	ASMT (ENSCLAG00000000340)	GYG2 (ENSCLAG00000000399)	ARSL (ENSCLAG00000000445)	MXRA5 (ENSCLAG00000000278)	PRKX (ENSCLAG00000000304) #23	ENSCLAG00000000341 #30	ENSCLAG00000000393	PUDP (ENSCLAG00000000477)	STS (ENSCLAG00000000517)	PNPLA4 (ENSCLAG00000000140)	ANOS1 (ENSCLAG00000000196)	ENSCLAG00000000233 #22	GPR143 (ENSCLAG00000000235)	SHROOM2 (ENSCLAG00000000344)
Degu	MODERN SPECIES	369																ENSODEG00000000294 #22	GPR143 (ENSODEG00000000196)	ENSODEG00000000177
Primates	ANCESTRAL SPECIES	19	ENSGT00940000162345	ENSGT00940000154344.b	ENSGT00510000049811	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b.eb.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879	ENSGT00940000154433.a.a
Haplorrhini	ANCESTRAL SPECIES	18	ENSGT00940000163186	ENSGT00940000154344.b	ENSGT00510000049811	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b.eb.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879	ENSGT00940000154433.b
Simiiformes	DUPLICATION
Simiiformes	ANCESTRAL SPECIES	9	ENSGT00510000049811	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00440000034745	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00960000187465	ENSGT00940000153421.a.a.a.a.b.i #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b.eb.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b.v.b	ENSGT00940000159771	ENSGT00940000160879	ENSGT00940000154433.b
Catarrhini	ANCESTRAL SPECIES	12	ENSGT00940000159942.a	ENSGT00940000159832.i #23	ENSGT00940000156607.a.a.b	ENSGT00940000157820.a.b	ENSGT01030000234626.A.b.o.a	ENSGT00940000156607.a.a.a	ENSGT00390000014753.l.a	ENSGT00940000161153	ENSGT00440000034745	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00390000000062.x.b.g.b	ENSGT00390000000938.p.b	ENSGT00950000183144.A.i.a.a.a.a.c	ENSGT00390000000062.x.b.g.a	ENSGT00940000153421.a.a.a.a.b.i #22	ENSGT00390000016722	ENSGT00390000016478.i.b	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b.eb.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b.v.b	ENSGT00940000159771	ENSGT00940000160879
Hominoidea	ANCESTRAL SPECIES	16	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832.i #23	ENSGT00940000157820.a.b	ENSGT01030000234626.A.b.o.a	ENSGT00940000156607.a.a.a	ENSGT00390000014753.l.a	ENSGT00940000161153	ENSGT00440000034745	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00390000000062.x.b.g.b	ENSGT00390000000938.p.b	ENSGT00390000000062.x.b.g.a	ENSGT00940000153421.a.a.a.a.b.i #22	ENSGT00390000016722	ENSGT00390000016478.i.b	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b.eb.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b.v.b	ENSGT00940000159771	ENSGT00940000160879
Hominidae	ANCESTRAL SPECIES	8	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832.i #23	ENSGT00940000157820.a.b	ENSGT01030000234626.A.b.o.a	ENSGT00940000156607.a.a.a	ENSGT00390000014753.l.a	ENSGT00940000161153	ENSGT00440000034745	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00390000000062.x.b.g.b	ENSGT00390000000938.p.b	ENSGT00390000000062.x.b.g.a	ENSGT00940000153421.a.a.a.a.b.i #22	ENSGT00390000016722	ENSGT00390000016478.i.b	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b.eb.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b.v.b	ENSGT00940000159771	ENSGT00940000160879
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	9	ENSGT00940000159942.a	ENSGT00940000159832.i #23	ENSGT00940000157820.a.b	ENSGT01030000234626.A.b.o.a	ENSGT00940000156607.a.a.a	ENSGT00390000010806.u.b	ENSGT00910000147236.a	ENSGT00390000014753.l.a	ENSGT00940000161153	ENSGT00440000034745	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00390000000062.x.b.g.b	ENSGT00390000000938.p.b	ENSGT00390000000062.x.b.g.a	ENSGT00940000153421.a.a.a.a.b.i #22	ENSGT00390000016722	ENSGT00390000016478.i.b	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b.eb.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b.v.b	ENSGT00940000159771	ENSGT00940000160879
Homo/Pan group	ANCESTRAL SPECIES	9	ENSGT00940000159942.a	ENSGT00940000159832.i #23	ENSGT00940000157820.a.b	ENSGT01030000234626.A.b.o.a	ENSGT00940000156607.a.a.a	ENSGT00390000010806.u.b	ENSGT00910000147236.a	ENSGT00390000014753.l.a	ENSGT00940000161153	ENSGT00440000034745.a	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00390000000062.x.b.g.b	ENSGT00390000000938.p.b	ENSGT00390000000062.x.b.g.a	ENSGT00940000153421.a.a.a.a.b.i #22	ENSGT00390000016722	ENSGT00390000016478.i.b	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b.eb.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b.v.b	ENSGT00940000159771	ENSGT00940000160879
Pan	ANCESTRAL SPECIES	6	ENSGT00940000159942.a	ENSGT00940000159832.i.a #23	ENSGT00940000157820.a.b	ENSGT01030000234626.A.b.o.a	ENSGT00940000156607.a.a.a	ENSGT00390000010806.u.b	ENSGT00910000147236.a	ENSGT00390000014753.l.a	ENSGT00940000161153	ENSGT00440000034745.a	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00390000000062.x.b.g.b	ENSGT00390000000938.p.b	ENSGT00390000000062.x.b.g.a	ENSGT00940000153421.a.a.a.a.b.i #22	ENSGT00390000016722	ENSGT00390000016478.i.b	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00410000025556.a.b	ENSGT00910000148007	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b.eb.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b.v.b	ENSGT00940000159771
Bonobo	MODERN SPECIES	369	ENSPPAG00000031938	NLGN4X (ENSPPAG00000024297)	ENSPPAG00000041919	ENSPPAG00000026565	ENSPPAG00000029939	PUDP (ENSPPAG00000033208)	STS (ENSPPAG00000027346)	ENSPPAG00000023541	PNPLA4 (ENSPPAG00000041363)	ENSPPAG00000033808	ENSPPAG00000034060	ANOS1 (ENSPPAG00000037398)	ENSPPAG00000038625	ENSPPAG00000012738	ENSPPAG00000040296	TBL1X (ENSPPAG00000040439) #22	GPR143 (ENSPPAG00000040569)	ENSPPAG00000043651	SHROOM2 (ENSPPAG00000041810)	CLDN34 (ENSPPAG00000019292) #21	WWC3 (ENSPPAG00000035084)	ENSPPAG00000029035	CLCN4 (ENSPPAG00000004966)	MID1 (ENSPPAG00000038224)	HCCS (ENSPPAG00000040960)	ARHGAP6 (ENSPPAG00000018191)	AMELX (ENSPPAG00000027973)	MSL3 (ENSPPAG00000039607)	ENSPPAG00000039486	PRPS2 (ENSPPAG00000034589)	ENSPPAG00000027387
Chimpanzee	MODERN SPECIES	972	PRKX (ENSPTRG00000022476) #23	ENSPTRG00000047401	ENSPTRG00000051405	NLGN4X (ENSPTRG00000021635)	ENSPTRG00000045716	PUDP (ENSPTRG00000050372)	ENSPTRG00000043603	STS (ENSPTRG00000021640)	PNPLA4 (ENSPTRG00000021641)	ENSPTRG00000003827	ENSPTRG00000021637	ANOS1 (ENSPTRG00000021645)	FAM9A (ENSPTRG00000021649)	ENSPTRG00000044756	FAM9B (ENSPTRG00000045285)	TBL1X (ENSPTRG00000044234) #22	GPR143 (ENSPTRG00000051528)	SHROOM2 (ENSPTRG00000045318)	ENSPTRG00000046452	CLDN34 (ENSPTRG00000043310) #21	WWC3 (ENSPTRG00000021653)	ENSPTRG00000047344	CLCN4 (ENSPTRG00000021655)	MID1 (ENSPTRG00000021656)	HCCS (ENSPTRG00000021657)	ARHGAP6 (ENSPTRG00000021658)	AMELX (ENSPTRG00000021659)	MSL3 (ENSPTRG00000021662)	FRMPD4 (ENSPTRG00000021663)	PRPS2 (ENSPTRG00000021665)	TLR7 (ENSPTRG00000028318)
Human	MODERN SPECIES	1827	ARSH (ENSG00000205667)	ARSF (ENSG00000062096)	MXRA5 (ENSG00000101825)	PRKX (ENSG00000183943) #23	NLGN4X (ENSG00000146938)	VCX3A (ENSG00000169059)	PUDP (ENSG00000130021)	STS (ENSG00000101846)	VCX (ENSG00000182583)	PNPLA4 (ENSG00000006757)	VCX2 (ENSG00000177504)	VCX3B (ENSG00000205642)	ANOS1 (ENSG00000011201)	FAM9A (ENSG00000183304)	FAM9B (ENSG00000177138)	TBL1X (ENSG00000101849) #22	GPR143 (ENSG00000101850)	SHROOM2 (ENSG00000146950)	CLDN34 (ENSG00000234469) #21	WWC3 (ENSG00000047644)	CLCN4 (ENSG00000073464)	MID1 (ENSG00000101871)	ENSG00000291314	HCCS (ENSG00000004961)	ARHGAP6 (ENSG00000047648)	AMELX (ENSG00000125363)	MSL3 (ENSG00000005302)	FRMPD4 (ENSG00000169933)	PRPS2 (ENSG00000101911)	TLR7 (ENSG00000196664)	TLR8 (ENSG00000101916)
Gorilla	MODERN SPECIES	523	ARSF (ENSGGOG00000015466)	MXRA5 (ENSGGOG00000003509)	PRKX (ENSGGOG00000038945) #23	ENSGGOG00000039941	NLGN4X (ENSGGOG00000009613)	ENSGGOG00000022061	PUDP (ENSGGOG00000004425)	ENSGGOG00000039560	STS (ENSGGOG00000015129)	PNPLA4 (ENSGGOG00000005430)	ENSGGOG00000003263	ANOS1 (ENSGGOG00000001551)	FAM9A (ENSGGOG00000004483)	ENSGGOG00000042556	ENSGGOG00000012708	TBL1X (ENSGGOG00000007537) #22	GPR143 (ENSGGOG00000013718)	SHROOM2 (ENSGGOG00000012923)	ENSGGOG00000007843	WWC3 (ENSGGOG00000013945)	CLCN4 (ENSGGOG00000010955)	ENSGGOG00000023785	MID1 (ENSGGOG00000003756)	HCCS (ENSGGOG00000007328)	ARHGAP6 (ENSGGOG00000009476)	AMELX (ENSGGOG00000027601)	ENSGGOG00000043743	MSL3 (ENSGGOG00000006582)	ENSGGOG00000008693	PRPS2 (ENSGGOG00000008315)	ENSGGOG00000043391
Orangutan	MODERN SPECIES	242	ENSPPYG00000041110	NLGN4X (ENSPPYG00000020101)	ENSPPYG00000034528	ENSPPYG00000034844	PUDP (ENSPPYG00000020105)	STS (ENSPPYG00000020106)	ENSPPYG00000020107	PNPLA4 (ENSPPYG00000020108)	ENSPPYG00000030724	ENSPPYG00000020103	ENSPPYG00000020110	ANOS1 (ENSPPYG00000020111)	ENSPPYG00000020112	ENSPPYG00000041314	FAM9B (ENSPPYG00000020113)	TBL1X (ENSPPYG00000020115) #22	GPR143 (ENSPPYG00000029613)	SHROOM2 (ENSPPYG00000020116)	WWC3 (ENSPPYG00000020117)	CLCN4 (ENSPPYG00000020118)	MID1 (ENSPPYG00000020119)	HCCS (ENSPPYG00000020120)	ARHGAP6 (ENSPPYG00000020121)	AMELX (ENSPPYG00000020122)	MSL3 (ENSPPYG00000020123)	FRMPD4 (ENSPPYG00000020124)	PRPS2 (ENSPPYG00000020125)	TLR7 (ENSPPYG00000035228)	TLR8 (ENSPPYG00000020126)	TMSB4X (ENSPPYG00000020127)	ENSPPYG00000020128
Gibbon	MODERN SPECIES	449	CRLF2 (ENSNLEG00000008543)	ENSNLEG00000027560	NLGN4X (ENSNLEG00000008563)	ENSNLEG00000018728	ENSNLEG00000031782	ENSNLEG00000031775	ENSNLEG00000031223	STS (ENSNLEG00000008592)	ENSNLEG00000028522	PNPLA4 (ENSNLEG00000008610)	ENSNLEG00000034678	ENSNLEG00000032968	ANOS1 (ENSNLEG00000008627)	ENSNLEG00000008661	ENSNLEG00000008698	TBL1X (ENSNLEG00000008726) #22	SHROOM2 (ENSNLEG00000008795)	WWC3 (ENSNLEG00000008813)	CLCN4 (ENSNLEG00000008869)	MID1 (ENSNLEG00000008909)	HCCS (ENSNLEG00000008965)	ARHGAP6 (ENSNLEG00000008995)	AMELX (ENSNLEG00000009032)	MSL3 (ENSNLEG00000009057)	ENSNLEG00000009084	PRPS2 (ENSNLEG00000031852)	ENSNLEG00000029266	TLR7 (ENSNLEG00000009123)	TLR8 (ENSNLEG00000009126)	TMSB4X (ENSNLEG00000027420)	ENSNLEG00000009132
Cercopithecidae	ANCESTRAL SPECIES	27	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832.i #23	ENSGT00940000156607.a.a.b	ENSGT00940000157820.a.b	ENSGT01030000234626.A.b.o.a	ENSGT00940000156607.a.a.a	ENSGT00390000014753.l.a	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00390000000062.x.b.g.b	ENSGT00390000000062.x.b.g.a	ENSGT00940000153421.a.a.a.a.b.i #22	ENSGT00390000016722	ENSGT00390000016478.i.b	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b.eb.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b.v.b	ENSGT00390000007547.h	ENSGT00950000182803.B.d.b.w
Cercopithecinae	ANCESTRAL SPECIES	13	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832.i #23	ENSGT00940000156607.a.a.b	ENSGT00940000157820.a.b	ENSGT01030000234626.A.b.o.a	ENSGT00940000156607.a.a.a	ENSGT00390000014753.l.a	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00390000000062.x.b.g.b	ENSGT00390000000062.x.b.g.a	ENSGT00940000153421.a.a.a.a.b.i #22	ENSGT00390000016722	ENSGT00390000016478.i.b	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151.f	ENSGT00950000182965.b.eb.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b.v.b	ENSGT00390000007547.h	ENSGT00950000182803.B.d.b.w
Cercopithecinae_a	ANCESTRAL SPECIES	11	ENSGT00940000161140	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832.i.g.a #23	ENSGT00940000157820.a.b	ENSGT01030000234626.A.b.o.a	ENSGT00940000156607.a.a.a	ENSGT00390000014753.l.a	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00390000000062.x.b.g.b	ENSGT00390000000062.x.b.g.a	ENSGT00940000153421.a.a.a.a.b.i #22	ENSGT00390000016722	ENSGT00390000016478.i.b	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151.f	ENSGT00950000182965.b.eb.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b.v.b	ENSGT00390000007547.h	ENSGT00950000182803.B.d.b.w
Macaca	ANCESTRAL SPECIES	29	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832.i.g.a #23	ENSGT00940000157820.a.b	ENSGT01030000234626.A.b.o.a	ENSGT00940000156607.a.a.a	ENSGT00440000034745	ENSGT00390000010806.u.b	ENSGT00390000014753.l.a	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00390000000062.x.b.g.b	ENSGT00390000000062.x.b.g.a	ENSGT00940000153421.a.a.a.a.b.i #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151.e.a	ENSGT00950000182965.b.eb.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b.v.b	ENSGT00390000007547.h	ENSGT00950000182803.B.d.a.j	ENSGT00940000159771
Pig-tailed macaque	MODERN SPECIES	549	ARSL (ENSMNEG00000039356)	ARSH (ENSMNEG00000043860)	ARSF (ENSMNEG00000041423)	MXRA5 (ENSMNEG00000028609)	PRKX (ENSMNEG00000008995) #23	ENSMNEG00000042954	NLGN4X (ENSMNEG00000038059)	ENSMNEG00000036694	ENSMNEG00000031381	PUDP (ENSMNEG00000042150)	STS (ENSMNEG00000041778)	PNPLA4 (ENSMNEG00000040651)	ANOS1 (ENSMNEG00000032430)	FAM9A (ENSMNEG00000027971)	FAM9B (ENSMNEG00000031342)	TBL1X (ENSMNEG00000029675) #22	GPR143 (ENSMNEG00000045522)	SHROOM2 (ENSMNEG00000037860)	ENSMNEG00000043034	WWC3 (ENSMNEG00000015194)	CLCN4 (ENSMNEG00000039953)	MID1 (ENSMNEG00000026727)	HCCS (ENSMNEG00000030629)	ARHGAP6 (ENSMNEG00000024505)	AMELX (ENSMNEG00000030965)	MSL3 (ENSMNEG00000045099)	FRMPD4 (ENSMNEG00000037159)	PRPS2 (ENSMNEG00000028517)	ENSMNEG00000032285	TLR7 (ENSMNEG00000037104)	TLR8 (ENSMNEG00000015028)
Macaca_a	ANCESTRAL SPECIES	11	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832.i.g.a #23	ENSGT00940000157820.a.b	ENSGT01030000234626.A.b.o.a	ENSGT00940000156607.a.a.a	ENSGT00440000034745	ENSGT00390000014753.l.a	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00390000000062.x.b.g.b	ENSGT00390000000062.x.b.g.a	ENSGT00940000153421.a.a.a.a.b.i #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151.e.a	ENSGT00950000182965.b.eb.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b.v.b	ENSGT00940000159771	ENSGT00940000160879	ENSGT00940000154433.a.a
Crab-eating macaque	MODERN SPECIES	175	ARSL (ENSMFAG00000038813)	ARSH (ENSMFAG00000033934)	ARSF (ENSMFAG00000038297)	MXRA5 (ENSMFAG00000031111)	ENSMFAG00000047474	ENSMFAG00000050462	ENSMFAG00000060651	ENSMFAG00000047931	PUDP (ENSMFAG00000045887)	STS (ENSMFAG00000003615)	PNPLA4 (ENSMFAG00000034240)	ANOS1 (ENSMFAG00000032686)	FAM9A (ENSMFAG00000003533)	FAM9B (ENSMFAG00000030768)	ENSMFAG00000058384	TBL1X (ENSMFAG00000005183) #22	GPR143 (ENSMFAG00000001522)	ENSMFAG00000064101	ENSMFAG00000031091	ENSMFAG00000063450	CLDN34 (ENSMFAG00000049824) #21	WWC3 (ENSMFAG00000040661)	CLCN4 (ENSMFAG00000041385)	MID1 (ENSMFAG00000037182)	HCCS (ENSMFAG00000030584)	ARHGAP6 (ENSMFAG00000037315)	ENSMFAG00000035396	ENSMFAG00000064480	MSL3 (ENSMFAG00000031868)	FRMPD4 (ENSMFAG00000035360)	PRPS2 (ENSMFAG00000031505)
Rhesus	MODERN SPECIES	327	ENSMMUG00000032544	NLGN4X (ENSMMUG00000011310)	ENSMMUG00000051504	ENSMMUG00000055686	PUDP (ENSMMUG00000017377)	STS (ENSMMUG00000017378)	PNPLA4 (ENSMMUG00000018194)	ENSMMUG00000051223	ENSMMUG00000061895	ENSMMUG00000056503	ENSMMUG00000059835	ENSMMUG00000058160	ANOS1 (ENSMMUG00000018191)	FAM9A (ENSMMUG00000047671)	FAM9B (ENSMMUG00000018844)	TBL1X (ENSMMUG00000006191) #22	GPR143 (ENSMMUG00000006192)	SHROOM2 (ENSMMUG00000006193)	WWC3 (ENSMMUG00000016290)	CLCN4 (ENSMMUG00000013635)	MID1 (ENSMMUG00000020179)	ENSMMUG00000061144	ENSMMUG00000051459	HCCS (ENSMMUG00000013993)	ARHGAP6 (ENSMMUG00000003896)	ENSMMUG00000054969	ENSMMUG00000051616	AMELX (ENSMMUG00000008256)	ENSMMUG00000063078	MSL3 (ENSMMUG00000002689)	ENSMMUG00000063578
Cercopithecinae_b	ANCESTRAL SPECIES	35	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832.i.g.a #23	ENSGT00940000157820.a.b	ENSGT01030000234626.A.b.o.a	ENSGT00940000156607.a.a.a	ENSGT00390000014753.l.a	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00390000000062.x.b.g.b	ENSGT00390000000062.x.b.g.a	ENSGT00960000187465	ENSGT00940000153421.a.a.a.a.b.i #22	ENSGT00390000016722	ENSGT00390000016478.i.b	ENSGT00940000155212	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151.f	ENSGT00950000182965.b.eb.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b.v.b	ENSGT00940000159771	ENSGT00940000160879	ENSGT00940000154433.a.a
Cercopithecinae_d	ANCESTRAL SPECIES	51	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832.i.g.a #23	ENSGT00510000048363.e.a.b	ENSGT01030000234626.A.b.o.a	ENSGT00940000156607.a.a.a	ENSGT00390000014753.l.a	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00390000000062.x.b.g.b	ENSGT00390000000062.x.b.g.a	ENSGT00960000187465	ENSGT00940000153421.a.a.a.a.b.i #22	ENSGT00390000016722	ENSGT00390000016478.i.b	ENSGT00940000155212	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151.f	ENSGT00950000182965.b.eb.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b.v.b	ENSGT00940000159771	ENSGT00940000160879	ENSGT00940000154433.a.a
Sooty mangabey	MODERN SPECIES	448	ARSL (ENSCATG00000043732)	ARSH (ENSCATG00000035369)	ARSF (ENSCATG00000037426)	MXRA5 (ENSCATG00000032500)	PRKX (ENSCATG00000040178) #23	ENSCATG00000044673	ENSCATG00000033348	NLGN4X (ENSCATG00000045063)	PUDP (ENSCATG00000039040)	STS (ENSCATG00000042492)	PNPLA4 (ENSCATG00000041197)	ANOS1 (ENSCATG00000034938)	FAM9A (ENSCATG00000017254)	FAM9B (ENSCATG00000037312)	ENSCATG00000028947	TBL1X (ENSCATG00000010513) #22	GPR143 (ENSCATG00000032300)	ENSCATG00000030274	SHROOM2 (ENSCATG00000036342)	WWC3 (ENSCATG00000036479)	CLCN4 (ENSCATG00000045208)	MID1 (ENSCATG00000029147)	HCCS (ENSCATG00000037288)	AMELX (ENSCATG00000031078)	ARHGAP6 (ENSCATG00000041999)	MSL3 (ENSCATG00000044726)	FRMPD4 (ENSCATG00000032453)	PRPS2 (ENSCATG00000044789)	TLR7 (ENSCATG00000043999)	TLR8 (ENSCATG00000044274)	ENSCATG00000035722
Drill	MODERN SPECIES	1514													FAM9A (ENSMLEG00000016727)	FAM9B (ENSMLEG00000011070)	ENSMLEG00000005464	TBL1X (ENSMLEG00000036425) #22	GPR143 (ENSMLEG00000032891)	ENSMLEG00000031913	SHROOM2 (ENSMLEG00000031458)	ENSMLEG00000027419	ENSMLEG00000027549	ENSMLEG00000031208	WWC3 (ENSMLEG00000029686)	CLCN4 (ENSMLEG00000021001)	MID1 (ENSMLEG00000034816)
Olive baboon	MODERN SPECIES	792				ENSPANG00000039410 #23	ENSPANG00000046059	ENSPANG00000044832	ENSPANG00000029603	NLGN4X (ENSPANG00000013392)	PUDP (ENSPANG00000006960)	STS (ENSPANG00000015621)	PNPLA4 (ENSPANG00000012311)	ANOS1 (ENSPANG00000020427)	FAM9B (ENSPANG00000008548)	ENSPANG00000046530	ENSPANG00000040998	TBL1X (ENSPANG00000016547) #22	GPR143 (ENSPANG00000010106)	SHROOM2 (ENSPANG00000005170)	WWC3 (ENSPANG00000017940)	CLCN4 (ENSPANG00000020606)	MID1 (ENSPANG00000006683)	HCCS (ENSPANG00000004637)	AMELX (ENSPANG00000010854)	ARHGAP6 (ENSPANG00000007278)	ENSPANG00000043491	MSL3 (ENSPANG00000001077)	ENSPANG00000050542	ENSPANG00000038884	FRMPD4 (ENSPANG00000000890)	PRPS2 (ENSPANG00000000891)	TLR7 (ENSPANG00000019254)
Vervet Monkey	MODERN SPECIES	203	ARSH (ENSCSAG00000015609)	ARSF (ENSCSAG00000015554)	ENSCSAG00000015550	ENSCSAG00000015543	PRKX (ENSCSAG00000015525) #23	ENSCSAG00000015479	ENSCSAG00000015471	NLGN4Y (ENSCSAG00000015461)	PUDP (ENSCSAG00000015456)	STS (ENSCSAG00000015446)	PNPLA4 (ENSCSAG00000015414)	ENSCSAG00000015410	ANOS1 (ENSCSAG00000015400)	FAM9A (ENSCSAG00000015382)	ENSCSAG00000015368	TBL1X (ENSCSAG00000015344) #22	GPR143 (ENSCSAG00000015333)	ENSCSAG00000015314	SHROOM2 (ENSCSAG00000015306)	CLDN34 (ENSCSAG00000015300) #21	WWC3 (ENSCSAG00000015295)	CLCN4 (ENSCSAG00000015279)	MID1 (ENSCSAG00000015273)	HCCS (ENSCSAG00000015264)	ARHGAP6 (ENSCSAG00000015249)	AMELX (ENSCSAG00000015206)	MSL3 (ENSCSAG00000015196)	FRMPD4 (ENSCSAG00000015185)	PRPS2 (ENSCSAG00000015172)	TLR7 (ENSCSAG00000019529)	TLR8 (ENSCSAG00000019530)
Rhinopithecus	ANCESTRAL SPECIES	593																ENSGT00940000153421.a.a.a.a.b.i #22	ENSGT00390000016722	ENSGT00390000016478.i.b	ENSGT00940000155212	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821
Golden snub-nosed monkey	MODERN SPECIES	2776																TBL1X (ENSRROG00000030460) #22	GPR143 (ENSRROG00000035302)	SHROOM2 (ENSRROG00000000052)	ENSRROG00000039706	WWC3 (ENSRROG00000002409)	CLCN4 (ENSRROG00000026310)	ENSRROG00000043615
Black snub-nosed monkey	MODERN SPECIES	2335																TBL1X (ENSRBIG00000028269) #22	GPR143 (ENSRBIG00000031351)
Platyrrhini	ANCESTRAL SPECIES	28	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832.h #23	ENSGT00940000153773.a.b.b.r.b	ENSGT01030000234626.A.b.p	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00440000034745	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT01040000240965	ENSGT00960000187465	ENSGT00940000153421.a.a.a.a.b.i #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b.eb.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b.v.b	ENSGT00940000159771	ENSGT00940000160879	ENSGT00940000154433.b
Cebidae	ANCESTRAL SPECIES	18	ENSGT00940000161140	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832.g #23	ENSGT01030000234626.A.b.p	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00440000034745	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT01040000240965	ENSGT00960000187465	ENSGT00940000153421.a.a.a.a.b.i #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b.eb.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b.v.b	ENSGT00940000159771	ENSGT00940000160879	ENSGT00940000154433.a.a
Cebidae_a	ANCESTRAL SPECIES	36	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832.h #23	ENSGT00940000153773.a.b.b.r.b	ENSGT00940000154355.f.o.b.d	ENSGT01030000234626.A.b.p	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00440000034745	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT01040000240965	ENSGT00960000187465	ENSGT00940000153421.a.a.a.a.b.i #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b.eb.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b.v.b	ENSGT00940000159771	ENSGT00940000160879	ENSGT00940000154433.a.a	ENSGT00940000154433.b
Capuchin	MODERN SPECIES	426												ENSCCAG00000031072	ENSCCAG00000024215	FAM9B (ENSCCAG00000024951)	ENSCCAG00000007508	TBL1X (ENSCCAG00000026365) #22	GPR143 (ENSCCAG00000027858)	SHROOM2 (ENSCCAG00000036670)	WWC3 (ENSCCAG00000010194)	CLCN4 (ENSCCAG00000021206)	MID1 (ENSCCAG00000029160)	HCCS (ENSCCAG00000029155)	ARHGAP6 (ENSCCAG00000037474)
Bolivian squirrel monkey	MODERN SPECIES	42	ENSSBOG00000021975	ENSSBOG00000030922	ENSSBOG00000033705	ENSSBOG00000019015	PUDP (ENSSBOG00000001289)	STS (ENSSBOG00000019003)	ENSSBOG00000033397	PNPLA4 (ENSSBOG00000018040)	ENSSBOG00000018165	ENSSBOG00000033414	ANOS1 (ENSSBOG00000032956)	ENSSBOG00000015549	ENSSBOG00000021955	ENSSBOG00000005958	ENSSBOG00000031924	TBL1X (ENSSBOG00000015622) #22	GPR143 (ENSSBOG00000019241)	SHROOM2 (ENSSBOG00000000055)	WWC3 (ENSSBOG00000033448)	CLCN4 (ENSSBOG00000029604)	MID1 (ENSSBOG00000018276)	HCCS (ENSSBOG00000016272)	ARHGAP6 (ENSSBOG00000018744)	AMELX (ENSSBOG00000033200)	ENSSBOG00000018595	ENSSBOG00000031637	MSL3 (ENSSBOG00000007759)	FRMPD4 (ENSSBOG00000019999)	PRPS2 (ENSSBOG00000023758)	TLR7 (ENSSBOG00000015568)	TLR8 (ENSSBOG00000035013)
Marmoset	MODERN SPECIES	78	ENSCJAG00000018850	PUDP (ENSCJAG00000040308)	STS (ENSCJAG00000000274)	ENSCJAG00000075334	ENSCJAG00000000866	PNPLA4 (ENSCJAG00000054805)	ENSCJAG00000075429	ENSCJAG00000073795	ENSCJAG00000004073	ENSCJAG00000053609	ANOS1 (ENSCJAG00000000873)	ENSCJAG00000055596	ENSCJAG00000000896	ENSCJAG00000082544	FAM9B (ENSCJAG00000000906)	TBL1X (ENSCJAG00000000909) #22	GPR143 (ENSCJAG00000000922)	SHROOM2 (ENSCJAG00000000928)	ENSCJAG00000056429	CLDN34 (ENSCJAG00000071198) #21	WWC3 (ENSCJAG00000000935)	CLCN4 (ENSCJAG00000000961)	MID1 (ENSCJAG00000000987)	HCCS (ENSCJAG00000001007)	ARHGAP6 (ENSCJAG00000001025)	AMELX (ENSCJAG00000001049)	MSL3 (ENSCJAG00000001061)	FRMPD4 (ENSCJAG00000006179)	ENSCJAG00000047794	TLR7 (ENSCJAG00000003924)	TLR8 (ENSCJAG00000003929)
Mas night monkey	MODERN SPECIES	549												ENSANAG00000035365	ENSANAG00000018652	ENSANAG00000009521	ENSANAG00000024738	TBL1X (ENSANAG00000032959) #22	GPR143 (ENSANAG00000034146)	ENSANAG00000014757	SHROOM2 (ENSANAG00000027946)	ENSANAG00000020812	WWC3 (ENSANAG00000023415)	CLCN4 (ENSANAG00000024160)	ENSANAG00000021221
Simiiformes	ANCESTRAL SPECIES																	ENSGT00940000153421.a.a.a.a.b.j #22
Catarrhini	ANCESTRAL SPECIES	43													ENSGT00940000165583	ENSGT00390000005569.x.b.q.a	ENSGT01040000241139	ENSGT00940000153421.a.a.a.a.b.j #22
Cercopithecidae	ANCESTRAL SPECIES	53													ENSGT00940000165583	ENSGT00390000005569.x.b.q.a	ENSGT01040000241139	ENSGT00940000153421.a.a.a.a.b.j #22
Cercopithecinae	ANCESTRAL SPECIES	44													ENSGT00940000165583	ENSGT00390000005569.x.b.q.a	ENSGT01040000241139	ENSGT00940000153421.a.a.a.a.b.j #22
Cercopithecinae_a	ANCESTRAL SPECIES	36													ENSGT00940000165583	ENSGT00390000005569.x.b.q.a	ENSGT01040000241139	ENSGT00940000153421.a.a.a.a.b.j #22	ENSGT00940000159832.i.g.b #23	ENSGT00940000155375.d	ENSGT00940000154443.b.b	ENSGT00940000155202.i.a
Macaca	ANCESTRAL SPECIES	41															ENSGT01040000241139	ENSGT00940000153421.a.a.a.a.b.j #22	ENSGT00940000159832.i.g.b #23	ENSGT00940000155375.d	ENSGT00940000154443.b.b	ENSGT00940000155202.i.a
Macaca_a	ANCESTRAL SPECIES	29															ENSGT01040000241139	ENSGT00940000153421.a.a.a.a.b.j #22	ENSGT00940000159832.i.g.b #23	ENSGT00940000155375.d	ENSGT00940000154443.b.b	ENSGT00940000155202.i.a	ENSGT00940000157452.k	ENSGT00940000157452.l.a	ENSGT00940000157452.l.b
Crab-eating macaque	MODERN SPECIES	174												RPS4Y1 (ENSMFAG00000055171)	ZFY (ENSMFAG00000052850)	ENSMFAG00000029941	ENSMFAG00000057015	TBL1Y (ENSMFAG00000050736) #22	ENSMFAG00000052639 #23	ENSMFAG00000058259	ENSMFAG00000056494	USP9Y (ENSMFAG00000065535)	DDX3Y (ENSMFAG00000060380)	UTY (ENSMFAG00000063023)	ENSMFAG00000063890	ENSMFAG00000053995	ENSMFAG00000049348	ENSMFAG00000051040	ENSMFAG00000047494	ENSMFAG00000061191	ENSMFAG00000050377	ENSMFAG00000052978	NLGN4Y (ENSMFAG00000038021)
Rhesus	MODERN SPECIES	328											ENSMMUG00000055976	SRY (ENSMMUG00000041853)	RPS4Y1 (ENSMMUG00000038331)	ZFY (ENSMMUG00000046378)	AMELY (ENSMMUG00000038866)	TBL1Y (ENSMMUG00000046495) #22	ENSMMUG00000056331 #23	ENSMMUG00000041468	ENSMMUG00000046892	USP9Y (ENSMMUG00000045991)	DDX3Y (ENSMMUG00000043966)	UTY (ENSMMUG00000038182)	ENSMMUG00000055280	ENSMMUG00000042225	ENSMMUG00000042267	ENSMMUG00000061325	NLGN4Y (ENSMMUG00000040210)	CYorf15A (ENSMMUG00000049104)	KDM5D (ENSMMUG00000045017)	ENSMMUG00000057579	EIF1AY (ENSMMUG00000043715)
Rhinopithecus	ANCESTRAL SPECIES																	ENSGT00940000153421.a.a.a.a.b.j #22
Golden snub-nosed monkey	MODERN SPECIES	281																ENSRROG00000017758 #22
Hominoidea	ANCESTRAL SPECIES	49													ENSGT00940000165583	ENSGT00390000005569.x.b.q.a	ENSGT01040000241139	ENSGT00940000153421.a.a.a.a.b.j #22
Hominidae	ANCESTRAL SPECIES	46													ENSGT00940000165583	ENSGT00390000005569.x.b.q.a	ENSGT01040000241139	ENSGT00940000153421.a.a.a.a.b.j #22
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	50													ENSGT00940000165583	ENSGT00390000005569.x.b.q.a	ENSGT01040000241139	ENSGT00940000153421.a.a.a.a.b.j #22
Homo/Pan group	ANCESTRAL SPECIES	49													ENSGT00940000165583	ENSGT00390000005569.x.b.q.a	ENSGT01040000241139	ENSGT00940000153421.a.a.a.a.b.j #22
Human	MODERN SPECIES	1828	SLC25A6 (ENSG00000292334)	ASMTL (ENSG00000292339)	P2RY8 (ENSG00000292333)	AKAP17A (ENSG00000292343)	ASMT (ENSG00000292336)	DHRSX (ENSG00000292338)	ZBED1 (ENSG00000292345)	CD99 (ENSG00000292348)	SRY (ENSG00000184895)	RPS4Y1 (ENSG00000129824)	ZFY (ENSG00000067646)	TGIF2LY (ENSG00000176679)	PCDH11Y (ENSG00000099715)	TSPY2 (ENSG00000168757)	AMELY (ENSG00000099721)	TBL1Y (ENSG00000092377) #22	TSPY4 (ENSG00000233803)	TSPY8 (ENSG00000229549)	TSPY3 (ENSG00000228927)	TSPY1 (ENSG00000258992)	TSPY9 (ENSG00000238074)	TSPY10 (ENSG00000236424)	USP9Y (ENSG00000114374)	DDX3Y (ENSG00000067048)	UTY (ENSG00000183878)	TMSB4Y (ENSG00000154620)	VCY (ENSG00000129864)	VCY1B (ENSG00000129862)	NLGN4Y (ENSG00000165246)	CDY2B (ENSG00000129873)	CDY2A (ENSG00000182415)
Pan	ANCESTRAL SPECIES	54														ENSGT00940000165583	ENSGT00390000005569.x.b.q.a	ENSGT00940000153421.a.a.a.a.b.j #22	ENSGT00940000159832.i.b #23
Chimpanzee	MODERN SPECIES	973										SRY (ENSPTRG00000022469)	RPS4Y1 (ENSPTRG00000022470)	ZFY (ENSPTRG00000022471)	AMELY (ENSPTRG00000022474)	ENSPTRG00000044388	ENSPTRG00000044034	TBL1Y (ENSPTRG00000022475) #22	PRKY (ENSPTRG00000038881) #23	ENSPTRG00000042614	ENSPTRG00000046004	NLGN4Y (ENSPTRG00000022494)	ENSPTRG00000049568	ENSPTRG00000044694	TMSB4Y (ENSPTRG00000052699)	UTY (ENSPTRG00000022489)	ENSPTRG00000006940	DDX3Y (ENSPTRG00000022488)	USP9Y (ENSPTRG00000022487)	ENSPTRG00000021627	ENSPTRG00000022501	ENSPTRG00000042501	KDM5D (ENSPTRG00000022503)
Tarsier	MODERN SPECIES	1352																TBL1X (ENSTSYG00000010075) #22	GPR143 (ENSTSYG00000006058)	ENSTSYG00000028503	ENSTSYG00000031195
Strepsirrhini	ANCESTRAL SPECIES	23	ENSGT00940000164022	ENSGT00940000154344.b	ENSGT00510000049811	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b.eb.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879	ENSGT00940000154433.a.a
Lemuriformes	ANCESTRAL SPECIES	48	ENSGT00940000162345	ENSGT00940000164022	ENSGT00940000154344.b	ENSGT00510000049811	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b.eb.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879	ENSGT00940000154433.a.a	ENSGT00930000150973.A
Lemuriformes_a	ANCESTRAL SPECIES	126	ENSGT00940000163186	ENSGT00510000049811	ENSGT00940000162345	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b.eb.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879
Coquerels sifaka	MODERN SPECIES	678	CD99 (ENSPCOG00000025203)	GYG2 (ENSPCOG00000027345)	ARSD (ENSPCOG00000025674)	ARSL (ENSPCOG00000019857)	ARSH (ENSPCOG00000020300)	MXRA5 (ENSPCOG00000020228)	PRKX (ENSPCOG00000017055) #23	ENSPCOG00000024267	PUDP (ENSPCOG00000017374)	STS (ENSPCOG00000019849)	PNPLA4 (ENSPCOG00000019870)	ANOS1 (ENSPCOG00000005754)	ENSPCOG00000020081	ENSPCOG00000017264	ENSPCOG00000016843	ENSPCOG00000025176 #22	GPR143 (ENSPCOG00000011131)	ENSPCOG00000016088	ENSPCOG00000022009	ENSPCOG00000000874	CLCN4 (ENSPCOG00000013246)	MID1 (ENSPCOG00000019051)	HCCS (ENSPCOG00000022245)	ARHGAP6 (ENSPCOG00000021704)	AMELX (ENSPCOG00000020144)
Greater bamboo lemur	MODERN SPECIES	619																ENSPSMG00000002231 #22	GPR143 (ENSPSMG00000002133)	ENSPSMG00000002115
Mouse lemur	MODERN SPECIES	169	ARHGAP6 (ENSMICG00000014376)	HCCS (ENSMICG00000014372)	MID1 (ENSMICG00000002488)	CLCN4 (ENSMICG00000002480)	WWC3 (ENSMICG00000002471)	MXRA5 (ENSMICG00000003692)	PRKX (ENSMICG00000002892) #23	ENSMICG00000046693	ENSMICG00000046354	ENSMICG00000044079	ENSMICG00000036320	PUDP (ENSMICG00000017082)	STS (ENSMICG00000013455)	PNPLA4 (ENSMICG00000009614)	ANOS1 (ENSMICG00000015083)	ENSMICG00000010404 #22	GPR143 (ENSMICG00000010413)	SHROOM2 (ENSMICG00000045523)	ENSMICG00000007978	ENSMICG00000014241	SLITRK2 (ENSMICG00000003910)	ENSMICG00000027545	ENSMICG00000030858	ENSMICG00000033128	ENSMICG00000034786	ENSMICG00000035061	SLITRK4 (ENSMICG00000036015)	ENSMICG00000034247	ENSMICG00000017029	LDOC1 (ENSMICG00000034780)	VAMP7 (ENSMICG00000001581)
Bushbaby	MODERN SPECIES	180	GYG2 (ENSOGAG00000005704)	ARSD (ENSOGAG00000029890)	ENSOGAG00000000152	ARSH (ENSOGAG00000006252)	ARSF (ENSOGAG00000014227)	MXRA5 (ENSOGAG00000025845)	ENSOGAG00000034315	PRKX (ENSOGAG00000007329) #23	ENSOGAG00000013201	ENSOGAG00000033641	PUDP (ENSOGAG00000006329)	STS (ENSOGAG00000006575)	PNPLA4 (ENSOGAG00000016901)	ANOS1 (ENSOGAG00000002477)	ENSOGAG00000032620	ENSOGAG00000011398 #22	GPR143 (ENSOGAG00000024603)	SHROOM2 (ENSOGAG00000026896)	ENSOGAG00000006267 #21	ENSOGAG00000001498	WWC3 (ENSOGAG00000016711)	CLCN4 (ENSOGAG00000014456)	ENSOGAG00000033369	MID1 (ENSOGAG00000014951)	ENSOGAG00000034817	HCCS (ENSOGAG00000003543)	ARHGAP6 (ENSOGAG00000003545)	AMELX (ENSOGAG00000034697)	MSL3 (ENSOGAG00000005030)	ENSOGAG00000028835	FRMPD4 (ENSOGAG00000008378)
Laurasiatheria	ANCESTRAL SPECIES	16	ENSGT00940000162345	ENSGT00940000163186	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00520000056155	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000153421.a.a.a.a.b #22
Common shrew	MODERN SPECIES	225																ENSSARG00000011567 #22
Laurasiatheria_a	ANCESTRAL SPECIES	10	ENSGT00510000049811	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT01050000244868.a.a.a.b.a.b.a.a.a ##30	ENSGT01050000244868.a.a.a.b.a.b.a.a.b #30	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00520000056155	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879
Laurasiatheria_b	ANCESTRAL SPECIES	10	ENSGT00510000049811	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT01050000244868.a.a.a.b.a.b.a.a.a ##30	ENSGT01050000244868.a.a.a.b.a.b.a.a.b #30	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00520000056155	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879
Laurasiatheria_c	ANCESTRAL SPECIES	10	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000170830	ENSGT01050000244868.a.a.a.b.a.b.a.a.a ##30	ENSGT01050000244868.a.a.a.b.a.b.a.a.b #30	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00520000056155	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879
Equus	DUPLICATION
Equus	ANCESTRAL SPECIES	48	ENSGT00940000161140	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.d ##30	ENSGT00940000170830	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.c ##30	ENSGT01050000244868.a.a.a.b.a.b.a.a.b #30	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b.a #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00520000056155	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151.o	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879
Donkey	MODERN SPECIES	24	ARSL (ENSEASG00005023698)	ARSH (ENSEASG00005018718)	ARSF (ENSEASG00005018721)	MXRA5 (ENSEASG00005010581)	PRKX (ENSEASG00005010584) #23	ENSEASG00005013063	ENSEASG00005004375 ##30	ENSEASG00005028581	ENSEASG00005004367 ##30	ENSEASG00005015472 #30	ENSEASG00005033693	PUDP (ENSEASG00005015403)	STS (ENSEASG00005011374)	PNPLA4 (ENSEASG00005037321)	ANOS1 (ENSEASG00005015192)	ENSEASG00005022688 #22	GPR143 (ENSEASG00005026627)	ENSEASG00005038719	CLDN34 (ENSEASG00005022698) #21	ENSEASG00005022700	WWC3 (ENSEASG00005020725)	ENSEASG00005020752
Horse	MODERN SPECIES	480	MXRA5 (ENSECAG00000017487)	PRKX (ENSECAG00000000012) #23	ENSECAG00000000093	ENSECAG00000057758	ENSECAG00000044468	ENSECAG00000000182 ##30	ENSECAG00000032353	ENSECAG00000029340 ##30	ENSECAG00000000408 #30	ENSECAG00000000709	PUDP (ENSECAG00000009014)	STS (ENSECAG00000009398)	PNPLA4 (ENSECAG00000013103)	ANOS1 (ENSECAG00000035101)	ENSECAG00000015264	ENSECAG00000015324 #22	GPR143 (ENSECAG00000010648)	SHROOM2 (ENSECAG00000012150)	CLDN34 (ENSECAG00000005133) #21	ENSECAG00000005232	WWC3 (ENSECAG00000013186)	CLCN4 (ENSECAG00000016806)	MID1 (ENSECAG00000019648)	HCCS (ENSECAG00000009436)	ARHGAP6 (ENSECAG00000013633)	AMELX (ENSECAG00000016413)	MSL3 (ENSECAG00000016699)	FRMPD4 (ENSECAG00000000153)	PRPS2 (ENSECAG00000024711)	TLR7 (ENSECAG00000007883)	TLR8 (ENSECAG00000009180)
Equus	ANCESTRAL SPECIES																	ENSGT00940000153421.a.a.a.a.b.b #22
Donkey	MODERN SPECIES	37	SRY (ENSEASG00005035549)	ENSEASG00005023765	ENSEASG00005014703	ENSEASG00005034241	ENSEASG00005037328	ENSEASG00005035173	ENSEASG00005026200	ENSEASG00005017764	ENSEASG00005022529	ENSEASG00005025009	ENSEASG00005037796	ENSEASG00005038269	ENSEASG00005010760	ENSEASG00005030729	ENSEASG00005017881	ENSEASG00005022686 #22	ENSEASG00005022690	ENSEASG00005022694	ENSEASG00005012884	ENSEASG00005012087	ENSEASG00005031831	ENSEASG00005028547	ENSEASG00005034760	RAB9A (ENSEASG00005034868)	TCEANC (ENSEASG00005016497)	EGFL6 (ENSEASG00005016498)	ENSEASG00005028709	TLR8 (ENSEASG00005025097)	TLR7 (ENSEASG00005035985)	PRPS2 (ENSEASG00005020912)	FRMPD4 (ENSEASG00005020904)
Chiroptera	ANCESTRAL SPECIES	25	ENSGT00940000163186	ENSGT00940000154344.b	ENSGT00510000049811	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000170830	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00520000056155	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879
Megabat	MODERN SPECIES	3716																ENSPVAG00000000854 #22
Microchiroptera	ANCESTRAL SPECIES	25	ENSGT00940000163186	ENSGT00940000154344.b	ENSGT00510000049811	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000170830	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00520000056155	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879
Microbat	DUPLICATION
Microbat	MODERN SPECIES	1475																ENSMLUG00000027637 #22	GPR143 (ENSMLUG00000002457)	SHROOM2 (ENSMLUG00000006048)	ENSMLUG00000028804 #21	ENSMLUG00000025198	WWC3 (ENSMLUG00000006838)	ENSMLUG00000002788	CLCN4 (ENSMLUG00000006866)
Microbat	MODERN SPECIES	1268	ANAPC1 (ENSMLUG00000014399)	ENSMLUG00000007404	ENSMLUG00000016079	MRPS5 (ENSMLUG00000003183)	PROM2 (ENSMLUG00000008761)	KCNIP3 (ENSMLUG00000006055)	FAHD2A (ENSMLUG00000023813)	GPAT2 (ENSMLUG00000008062)	ADRA2B (ENSMLUG00000023263)	DUSP2 (ENSMLUG00000028013)	STARD7 (ENSMLUG00000008139)	PDCL3 (ENSMLUG00000016446)	NMS (ENSMLUG00000003896)	CHST10 (ENSMLUG00000014170)	ENSMLUG00000024883	ENSMLUG00000006516 #22
Greater horseshoe bat	MODERN SPECIES		CD99 (ENSRFEG00010004377)	XG (ENSRFEG00010004330)	GYG2 (ENSRFEG00010004271)	ARSD (ENSRFEG00010004219)	ARSH (ENSRFEG00010004185)	ARSF (ENSRFEG00010004022)	MXRA5 (ENSRFEG00010003957)	PRKX (ENSRFEG00010003940) #23	ENSRFEG00010003924	ENSRFEG00010003910	ENSRFEG00010003882	PUDP (ENSRFEG00010003859)	STS (ENSRFEG00010003830)	PNPLA4 (ENSRFEG00010018899)	ANOS1 (ENSRFEG00010018777)	ENSRFEG00010018688 #22	GPR143 (ENSRFEG00010018587)	SHROOM2 (ENSRFEG00010018546)	ENSRFEG00010018513 #21	ENSRFEG00010018484 #21	WWC3 (ENSRFEG00010018414)	ENSRFEG00010018388	CLCN4 (ENSRFEG00010018295)	MID1 (ENSRFEG00010018194)	HCCS (ENSRFEG00010018161)	AMELX (ENSRFEG00010018067)	ARHGAP6 (ENSRFEG00010017791)	ENSRFEG00010017575	FRMPD4 (ENSRFEG00010016886)	PRPS2 (ENSRFEG00010016807)	TLR7 (ENSRFEG00010016759)
Carnivora	ANCESTRAL SPECIES	11	ENSGT00940000154344.b	ENSGT00510000049811	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT01050000244868.a.a.a.b.a.b.a.a.a ##30	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00940000161922.j	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151.m	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879
Felidae	ANCESTRAL SPECIES	12	ENSGT00940000163186	ENSGT00940000154344.b	ENSGT00510000049811	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00940000161922.j	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151.m	ENSGT00950000183087.A.a.b.a.j.b	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771
Panthera	ANCESTRAL SPECIES	41	ENSGT00940000163186	ENSGT00940000154344.b	ENSGT00510000049811	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151.m	ENSGT00950000183087.A.a.b.a.j.b	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879
Tiger	MODERN SPECIES	53																ENSPTIG00000014778 #22	GPR143 (ENSPTIG00000014729)
Panthera_a	ANCESTRAL SPECIES	40	ENSGT00940000164022	ENSGT00940000163186	ENSGT00510000049811	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151.m	ENSGT00950000183087.A.a.b.a.j.b	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT01020000232259	ENSGT00950000182803.B.d.b	ENSGT00940000159771
leopard	MODERN SPECIES	71											ENSPPRG00000007424	PUDP (ENSPPRG00000007178)	STS (ENSPPRG00000006987)	PNPLA4 (ENSPPRG00000006161)	ANOS1 (ENSPPRG00000005978)	ENSPPRG00000005504 #22	GPR143 (ENSPPRG00000002506)	ENSPPRG00000002449	ENSPPRG00000002391	WWC3 (ENSPPRG00000001777)	CLCN4 (ENSPPRG00000001373)	MID1 (ENSPPRG00000000611)	HCCS (ENSPPRG00000023032)	ARHGAP6 (ENSPPRG00000023482)	AMELX (ENSPPRG00000023933)	MSL3 (ENSPPRG00000024561)	FRMPD4 (ENSPPRG00000018040)	ENSPPRG00000013990	PRPS2 (ENSPPRG00000013035)	TLR7 (ENSPPRG00000012499)	TLR8 (ENSPPRG00000011696)
lion	MODERN SPECIES	88	POLA1 (ENSPLOG00000016946)	ARX (ENSPLOG00000017861)	ENSPLOG00000017948	ENSPLOG00000018008	ENSPLOG00000018034	ARSL (ENSPLOG00000018103)	ARSH (ENSPLOG00000018317)	ARSF (ENSPLOG00000018404)	MXRA5 (ENSPLOG00000018525)	PRKX (ENSPLOG00000018600) #23	ENSPLOG00000018727	PUDP (ENSPLOG00000018856)	STS (ENSPLOG00000018921)	PNPLA4 (ENSPLOG00000019079)	ANOS1 (ENSPLOG00000019165)	ENSPLOG00000019290 #22	GPR143 (ENSPLOG00000019393)	ENSPLOG00000019475	ENSPLOG00000019520 #21	WWC3 (ENSPLOG00000019546)	CLCN4 (ENSPLOG00000019599)	MID1 (ENSPLOG00000019686)	HCCS (ENSPLOG00000019784)	ARHGAP6 (ENSPLOG00000019926)	AMELX (ENSPLOG00000020208)	ENSPLOG00000020441	MSL3 (ENSPLOG00000020518)	FRMPD4 (ENSPLOG00000020782)	ENSPLOG00000021367	ENSPLOG00000021390	PRPS2 (ENSPLOG00000021410)
Cat	MODERN SPECIES	252	ENSFCAG00000049439	XG (ENSFCAG00000043945)	GYG2 (ENSFCAG00000010296)	ARSD (ENSFCAG00000019165)	ARSL (ENSFCAG00000005924)	ARSH (ENSFCAG00000029487)	ARSF (ENSFCAG00000012369)	MXRA5 (ENSFCAG00000012142)	PRKX (ENSFCAG00000030120) #23	ENSFCAG00000051037	ENSFCAG00000000375	ENSFCAG00000034302	STS (ENSFCAG00000024019)	PNPLA4 (ENSFCAG00000004082)	ANOS1 (ENSFCAG00000004854)	ENSFCAG00000011563 #22	GPR143 (ENSFCAG00000021932)	SHROOM2 (ENSFCAG00000043376)	ENSFCAG00000047818 #21	ENSFCAG00000022520	WWC3 (ENSFCAG00000011192)	CLCN4 (ENSFCAG00000007631)	MID1 (ENSFCAG00000002582)	HCCS (ENSFCAG00000022393)	ARHGAP6 (ENSFCAG00000002122)	AMELX (ENSFCAG00000023640)	ENSFCAG00000030523	MSL3 (ENSFCAG00000002794)	FRMPD4 (ENSFCAG00000006682)	ENSFCAG00000039079	PRPS2 (ENSFCAG00000026323)
Caniformia	ANCESTRAL SPECIES	26	ENSGT00940000154344.b	ENSGT00510000049811	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT01050000244868.a.a.a.b.a.b.a.a.a ##30	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151.m	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879	ENSGT00940000154433.a.a
Canidae	ANCESTRAL SPECIES	26	ENSGT00940000161140	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000160340.c.c.b.a.a	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.f ##30	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.e.b ##30	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.e.a ##30	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151.m	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879	ENSGT00940000154433.a.a
Canis_lupus	ANCESTRAL SPECIES	26	ENSGT00940000161140	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000160340.c.c.b.a.a	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.f ##30	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.e.b ##30	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.e.a ##30	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151.m	ENSGT00940000158012.c.a.a.b.b.b	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879
Dog	MODERN SPECIES	144	ENSCAFG00845022614	GYG2 (ENSCAFG00845022845)	ARSL (ENSCAFG00845023249)	ARSH (ENSCAFG00845023726)	ARSF (ENSCAFG00845023881)	MXRA5 (ENSCAFG00845023994)	ENSCAFG00845024116 #23	ENSCAFG00845024207	ENSCAFG00845024250 ##30	OBP (ENSCAFG00845024305) ##30	ENSCAFG00845024690	PUDP (ENSCAFG00845025128)	STS (ENSCAFG00845025194)	PNPLA4 (ENSCAFG00845024459)	ANOS1 (ENSCAFG00845024786)	TBL1X (ENSCAFG00845025373) #22	GPR143 (ENSCAFG00845025566)	ENSCAFG00845025754	ENSCAFG00845025833	CLCN4 (ENSCAFG00845026001)	MID1 (ENSCAFG00845026369)	HCCS (ENSCAFG00845026624)	ARHGAP6 (ENSCAFG00845026713)	ENSCAFG00845026844	ENSCAFG00845027078	MSL3 (ENSCAFG00845027243)	ENSCAFG00845027491	FRMPD4 (ENSCAFG00845027637)	ENSCAFG00845028207	PRPS2 (ENSCAFG00845028237)	TLR7 (ENSCAFG00845028303)
Dingo	MODERN SPECIES	217	ARSD (ENSCAFG00020001625)	ARSL (ENSCAFG00020001641)	ARSH (ENSCAFG00020001647)	ARSF (ENSCAFG00020001661)	MXRA5 (ENSCAFG00020001680)	PRKX (ENSCAFG00020001689) #23	ENSCAFG00020001708	ENSCAFG00020001728 ##30	ENSCAFG00020001749 ##30	ENSCAFG00020001786	PUDP (ENSCAFG00020001818)	STS (ENSCAFG00020001851)	PNPLA4 (ENSCAFG00020002013)	ANOS1 (ENSCAFG00020002032)	ENSCAFG00020002080	ENSCAFG00020002098 #22	GPR143 (ENSCAFG00020002110)	ENSCAFG00020002128	ENSCAFG00020002145	ENSCAFG00020002147 #21	ENSCAFG00020002156	WWC3 (ENSCAFG00020002166)	CLCN4 (ENSCAFG00020002224)	MID1 (ENSCAFG00020002249)	HCCS (ENSCAFG00020002285)	ARHGAP6 (ENSCAFG00020002309)	AMELX (ENSCAFG00020002340)	ENSCAFG00020002352	MSL3 (ENSCAFG00020002360)	ENSCAFG00020002578	FRMPD4 (ENSCAFG00020002590)
Red fox	MODERN SPECIES	110								ENSVVUG00000018851 ##30	ENSVVUG00000018856 ##30	ENSVVUG00000018859 ##30	NLGN4X (ENSVVUG00000018878)	PUDP (ENSVVUG00000018890)	STS (ENSVVUG00000018896)	PNPLA4 (ENSVVUG00000018924)	ANOS1 (ENSVVUG00000018957)	TBL1X (ENSVVUG00000019012) #22	GPR143 (ENSVVUG00000019023)	SHROOM2 (ENSVVUG00000019028)	ENSVVUG00000019031	WWC3 (ENSVVUG00000019038)	CLCN4 (ENSVVUG00000019049)	MID1 (ENSVVUG00000019057)	HCCS (ENSVVUG00000019075)	ARHGAP6 (ENSVVUG00000019086)	AMELX (ENSVVUG00000019126)	MSL3 (ENSVVUG00000019141)	FRMPD4 (ENSVVUG00000019150)	ENSVVUG00000019156	PRPS2 (ENSVVUG00000019172)	TLR7 (ENSVVUG00000019267)	TLR8 (ENSVVUG00000019271)
Caniformia_b	ANCESTRAL SPECIES	24	ENSGT00940000154344.b	ENSGT00510000049811	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT01050000244868.a.a.a.b.a.b.a.a.a ##30	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00520000056155	ENSGT00390000005717 #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151.m	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b.d.b	ENSGT00940000159771	ENSGT00940000160879
Mustelinae	ANCESTRAL SPECIES	131	ENSGT00510000049811	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT01050000244868.a.a.a.b.a.b.a.a.a ##30	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22
Ferret	MODERN SPECIES	295	ARSL (ENSMPUG00000001161)	ARSH (ENSMPUG00000001111)	ARSF (ENSMPUG00000001108)	MXRA5 (ENSMPUG00000001107)	ENSMPUG00000001106	PRKX (ENSMPUG00000001102) #23	ENSMPUG00000001099	ENSMPUG00000001096 ##30	ENSMPUG00000001093	ENSMPUG00000001092	ENSMPUG00000019242	PUDP (ENSMPUG00000001087)	STS (ENSMPUG00000001082)	PNPLA4 (ENSMPUG00000001071)	ANOS1 (ENSMPUG00000001066)	ENSMPUG00000001063 #22	ENSMPUG00000019238
American mink	MODERN SPECIES	126	XG (ENSNVIG00000015061)	GYG2 (ENSNVIG00000015015)	ARSD (ENSNVIG00000014995)	ARSL (ENSNVIG00000014948)	ARSH (ENSNVIG00000014924)	ARSF (ENSNVIG00000014862)	MXRA5 (ENSNVIG00000014851)	PRKX (ENSNVIG00000014829) #23	ENSNVIG00000014795 ##30	ENSNVIG00000014706	PUDP (ENSNVIG00000014676)	STS (ENSNVIG00000014668)	PLPL4 (ENSNVIG00000014625)	ANOS1 (ENSNVIG00000014559)	ENSNVIG00000014548	ENSNVIG00000014426 #22
Ursidae	ANCESTRAL SPECIES	28	ENSGT00940000154344.b	ENSGT00510000049811	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT01050000244868.a.a.a.b.a.b.a.a.a ##30	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722.m	ENSGT00940000155212	ENSGT00520000056155	ENSGT00390000005717 #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821.k.a	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151.m	ENSGT00950000182965.b	ENSGT00940000154837.f.f	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b.d.b	ENSGT00940000159771
Ursus	ANCESTRAL SPECIES	163	ENSGT00940000154344.b	ENSGT00510000049811	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT01050000244868.a.a.a.b.a.b.a.a.a ##30	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722.m	ENSGT00940000155212	ENSGT00520000056155
American black bear	MODERN SPECIES	4246																ENSUAMG00000026293 #22	ENSUAMG00000026292
Polar bear	MODERN SPECIES	187	ENSUMAG00000019080	ENSUMAG00000019090	GYG2 (ENSUMAG00000019102)	ARSD (ENSUMAG00000019106)	ARSL (ENSUMAG00000019108)	ARSH (ENSUMAG00000019112)	ARSF (ENSUMAG00000019117)	MXRA5 (ENSUMAG00000019122)	PRKX (ENSUMAG00000019125) #23	ENSUMAG00000019132 ##30	ENSUMAG00000019138	PUDP (ENSUMAG00000019151)	STS (ENSUMAG00000019158)	PNPLA4 (ENSUMAG00000019166)	ANOS1 (ENSUMAG00000019171)	ENSUMAG00000019228 #22	GPR143 (ENSUMAG00000019414)	ENSUMAG00000019515	ENSUMAG00000019518	ENSUMAG00000019520
Giant Panda	MODERN SPECIES	2288	GYG2 (ENSAMEG00000005507)	ARSD (ENSAMEG00000005477)	ARSH (ENSAMEG00000005400)	ARSF (ENSAMEG00000005388)	MXRA5 (ENSAMEG00000005372)	PRKX (ENSAMEG00000005348) #23	ENSAMEG00000027159	ENSAMEG00000001506	STS (ENSAMEG00000001445)	PNPLA4 (ENSAMEG00000012515)	ENSAMEG00000006830	ENSAMEG00000030203	ENSAMEG00000030660	ENSAMEG00000014903	ENSAMEG00000010492	ENSAMEG00000015133 #22	ENSAMEG00000009277	SHROOM2 (ENSAMEG00000004939)	WWC3 (ENSAMEG00000010338)	CLCN4 (ENSAMEG00000010265)	ENSAMEG00000010220	HCCS (ENSAMEG00000010198)	ENSAMEG00000010177	AMELX (ENSAMEG00000010171)	MSL3 (ENSAMEG00000010145)	FRMPD4 (ENSAMEG00000010130)	ENSAMEG00000019784	PRPS2 (ENSAMEG00000010106)	TLR7 (ENSAMEG00000019777)	TLR8 (ENSAMEG00000019770)	ENSAMEG00000010093
Artiodactyla	ANCESTRAL SPECIES	9	ENSGT00940000161140	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.b ##30	ENSGT00940000170830	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b ##30	ENSGT01050000244868.a.a.a.b.a.b.a.a.b #30	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879	ENSGT00940000154433.a.a
Suina	ANCESTRAL SPECIES	41	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000163319	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.b ##30	ENSGT00940000170830	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b ##30	ENSGT01050000244868.a.a.a.b.a.b.a.a.b #30	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT01040000241139	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879
Pig	DUPLICATION
Pig	MODERN SPECIES	300	ENSSSCG00000025086	ENSSSCG00000046611	PRKX (ENSSSCG00000038963) #23	ENSSSCG00000012093 ##30	ENSSSCG00000012094 ##30	ENSSSCG00000038458	OBP (ENSSSCG00000012095) ##30	ENSSSCG00000054257	ENSSSCG00000035655	ENSSSCG00000033643	ENSSSCG00000023172	ENSSSCG00000026520	ENSSSCG00000061573	ENSSSCG00000012100	ENSSSCG00000012101	ENSSSCG00000012102 #22	ENSSSCG00000012103	SHROOM2 (ENSSSCG00000012104)	ENSSSCG00000042673 #21	ENSSSCG00000051860 #21	ENSSSCG00000050596 #21	WWC3 (ENSSSCG00000012108)	CLCN4 (ENSSSCG00000024809)	MID1 (ENSSSCG00000012110)	HCCS (ENSSSCG00000012111)	ENSSSCG00000012112	AMELY (ENSSSCG00000012113)	MSL3 (ENSSSCG00000012114)	FRMPD4 (ENSSSCG00000030877)	ENSSSCG00000041542	PRPS2 (ENSSSCG00000057105)
Pig	MODERN SPECIES	301						ENSSSCG00000061068	ENSSSCG00000057353	ENSSSCG00000036077 ##30	ENSSSCG00000031410 ##30	ENSSSCG00000038567	ENSSSCG00000032439	ENSSSCG00000035838	ENSSSCG00000036122	ENSSSCG00000038027	ENSSSCG00000038192	ENSSSCG00000038226 #22	ENSSSCG00000036341	ENSSSCG00000034469	ENSSSCG00000032135	ENSSSCG00000039144	ENSSSCG00000012833	ENSSSCG00000055885	ENSSSCG00000043796	ENSSSCG00000031398	ENSSSCG00000033858	ENSSSCG00000056055	ENSSSCG00000047835	ENSSSCG00000056936	ENSSSCG00000040592 ##30	ENSSSCG00000025253	ENSSSCG00000026430
Chacoan peccary	MODERN SPECIES	925	GYG2 (ENSCWAG00000006184)	ARSD (ENSCWAG00000006137)	ARSL (ENSCWAG00000006085)	ARSF (ENSCWAG00000005528)	MXRA5 (ENSCWAG00000005483)	PRKX (ENSCWAG00000005455) #23	ENSCWAG00000005296 ##30	ENSCWAG00000005242 ##30	ENSCWAG00000005223 #30	ENSCWAG00000005129	PUDP (ENSCWAG00000005066)	STS (ENSCWAG00000004943)	PNPLA4 (ENSCWAG00000004893)	ANOS1 (ENSCWAG00000004810)	ENSCWAG00000004797	ENSCWAG00000004754 #22	GPR143 (ENSCWAG00000004631)	ENSCWAG00000004537
Artiodactyla_a	ANCESTRAL SPECIES	9	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b ##30	ENSGT01030000235420	ENSGT01050000244868.a.a.a.b.a.b.a.a.b #30	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879	ENSGT00940000154433.a.a
Camelidae	ANCESTRAL SPECIES	59	ENSGT00940000161561	ENSGT00940000164022	ENSGT00510000049811	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000163319	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000170830	ENSGT01050000244868.a.a.a.b.a.b.a.a.b #30	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00520000056155	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879	ENSGT00940000154433.a.a
Alpaca	MODERN SPECIES	3262																ENSVPAG00000011623 #22
Arabian camel	MODERN SPECIES	204	XG (ENSCDRG00005017911)	GYG2 (ENSCDRG00005018612)	ARSD (ENSCDRG00005018666)	ARSL (ENSCDRG00005018696)	ARSF (ENSCDRG00005018790)	MXRA5 (ENSCDRG00005018835)	ENSCDRG00005018989	ENSCDRG00005019016	ENSCDRG00005019038 #30	ENSCDRG00005019077	ENSCDRG00005019099	PUDP (ENSCDRG00005019149)	STS (ENSCDRG00005019178)	PNPLA4 (ENSCDRG00005019233)	ANOS1 (ENSCDRG00005019314)	ENSCDRG00005019358 #22	GPR143 (ENSCDRG00005019461)	ENSCDRG00005019562	ENSCDRG00005019574	WWC3 (ENSCDRG00005019584)	CLCN4 (ENSCDRG00005019632)	MID1 (ENSCDRG00005019668)	HCCS (ENSCDRG00005019692)	ARHGAP6 (ENSCDRG00005008483)	AMELX (ENSCDRG00005008628)	ENSCDRG00005008775	FRMPD4 (ENSCDRG00005009509)	PRPS2 (ENSCDRG00005010248)	TLR7 (ENSCDRG00005010320)	TLR8 (ENSCDRG00005010375)	TMSB4X (ENSCDRG00005010405)
Artiodactyla_b	ANCESTRAL SPECIES	24	ENSGT00510000049811	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b ##30	ENSGT01030000235420	ENSGT01050000244868.a.a.a.b.a.b.a.a.b #30	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879	ENSGT00940000154433.a.a
Cetacea	ANCESTRAL SPECIES	21	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000164022	ENSGT00940000163186	ENSGT00940000154344.b	ENSGT00510000049811	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b.`b.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879	ENSGT00930000150973.A	ENSGT00940000162067
Odontoceti	ANCESTRAL SPECIES	22	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000164022	ENSGT00940000163186	ENSGT00940000154344.b	ENSGT00510000049811	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b.`b.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879	ENSGT00940000154433.b	ENSGT00930000150973.A
Odontoceti_a	ANCESTRAL SPECIES	20	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000164022	ENSGT00940000163186	ENSGT00940000154344.b	ENSGT00510000049811	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b.`b.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879	ENSGT00940000154433.b.n	ENSGT00940000162067
Odontoceti_b	ANCESTRAL SPECIES	22	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000164022	ENSGT00940000163186	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00950000183120.e.b.a.b	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00410000025556.a.b	ENSGT00940000154399.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00940000155104.q.b	ENSGT00510000047363	ENSGT00390000009151	ENSGT00950000182965.b.`b.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771
Monodontidae	ANCESTRAL SPECIES	32	ENSGT00940000162413	ENSGT01050000244840.B	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000164022	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00940000154399.a.b	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b.`b.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879	ENSGT00940000154433.b.n
Beluga whale	MODERN SPECIES	64										ENSDLEG00000008157	PUDP (ENSDLEG00000008104)	ENSDLEG00000008093	STS (ENSDLEG00000008060)	PNPLA4 (ENSDLEG00000008037)	ANOS1 (ENSDLEG00000007965)	TBL1X (ENSDLEG00000020062) #22	GPR143 (ENSDLEG00000020055)	SHROOM2 (ENSDLEG00000020046)	ENSDLEG00000020041	WWC3 (ENSDLEG00000020031)	CLCN4 (ENSDLEG00000020016)	MID1 (ENSDLEG00000020008)	ENSDLEG00000020004	HCCS (ENSDLEG00000020001)	AMELX (ENSDLEG00000019998)	ARHGAP6 (ENSDLEG00000019991)	MSL3 (ENSDLEG00000019928)	ENSDLEG00000019916	FRMPD4 (ENSDLEG00000019903)	PRPS2 (ENSDLEG00000019898)	TLR7 (ENSDLEG00000019895)
Narwhal	MODERN SPECIES	309	P2RY8 (ENSMMNG00015018374)	AKAP17A (ENSMMNG00015018359)	ENSMMNG00015018337	ENSMMNG00015018322	GYG2 (ENSMMNG00015018281)	ARSD (ENSMMNG00015018253)	MXRA5 (ENSMMNG00015018222)	PRKX (ENSMMNG00015018186) #23	ENSMMNG00015018095	ENSMMNG00015018046	PUDP (ENSMMNG00015018020)	ENSMMNG00015017986	STS (ENSMMNG00015017938)	PNPLA4 (ENSMMNG00015017900)	ANOS1 (ENSMMNG00015017865)	ENSMMNG00015017813 #22	GPR143 (ENSMMNG00015017757)	SHROOM2 (ENSMMNG00015017718)	ENSMMNG00015017695	WWC3 (ENSMMNG00015017376)	ENSMMNG00015017266	ZFY (ENSMMNG00015017205)	ENSMMNG00015016990	ENSMMNG00015016933	MID1 (ENSMMNG00015016886)	ENSMMNG00015016859	HCCS (ENSMMNG00015016825)	ARHGAP6 (ENSMMNG00015016475)	AMELX (ENSMMNG00015016277)	ENSMMNG00015016247	ENSMMNG00015016140
Vaquita	MODERN SPECIES	34	ENSPSNG00000020493	ENSPSNG00000020517	ZBED1 (ENSPSNG00000020538)	CD99 (ENSPSNG00000020555)	GYG2 (ENSPSNG00000020587)	ARSD (ENSPSNG00000020644)	MXRA5 (ENSPSNG00000020746)	PRKX (ENSPSNG00000020797) #23	ENSPSNG00000020881	ENSPSNG00000020969	PUDP (ENSPSNG00000020989)	STS (ENSPSNG00000021279)	ENSPSNG00000021948	PNPLA4 (ENSPSNG00000021966)	ANOS1 (ENSPSNG00000022014)	ENSPSNG00000022058 #22	GPR143 (ENSPSNG00000022086)	SHROOM2 (ENSPSNG00000022106)	WWC3 (ENSPSNG00000022116)	ENSPSNG00000022138	CLCN4 (ENSPSNG00000022149)	MID1 (ENSPSNG00000022169)	ENSPSNG00000022180	HCCS (ENSPSNG00000013406)	ARHGAP6 (ENSPSNG00000013460)	ENSPSNG00000013654	AMELX (ENSPSNG00000013715)	ENSPSNG00000013820	FRMPD4 (ENSPSNG00000014495)	PRPS2 (ENSPSNG00000015830)	TLR7 (ENSPSNG00000015939)
Dolphin	MODERN SPECIES	3148																ENSTTRG00000008100 #22	ENSTTRG00000008117	SHROOM2 (ENSTTRG00000008127)
Sperm whale	MODERN SPECIES	18	DHRSX (ENSPCTG00005010815)	ENSPCTG00005010864	GYG2 (ENSPCTG00005011030)	ARSE (ENSPCTG00005011100)	MXRA5 (ENSPCTG00005011141)	PRKX (ENSPCTG00005011175) #23	ENSPCTG00005011202	ENSPCTG00005011220	NLGN4X (ENSPCTG00005011273)	PUDP (ENSPCTG00005011380)	STS (ENSPCTG00005011451)	PNPLA4 (ENSPCTG00005011770)	ENSPCTG00005011870	ENSPCTG00005011889	ANOS1 (ENSPCTG00005011938)	ENSPCTG00005012092 #22	GPR143 (ENSPCTG00005012134)	ENSPCTG00005012240	WWC3 (ENSPCTG00005012279)	ENSPCTG00005012322	CLCN4 (ENSPCTG00005012367)	MID1 (ENSPCTG00005012468)	HCCS (ENSPCTG00005012555)	ARHGAP6 (ENSPCTG00005012633)	ENSPCTG00005012761	AMELX (ENSPCTG00005012836)	MSL3 (ENSPCTG00005012875)	FRMPD4 (ENSPCTG00005013977)	PRPS2 (ENSPCTG00005014927)	TLR7 (ENSPCTG00005014996)	TLR8 (ENSPCTG00005015071)
Blue whale	MODERN SPECIES	40	ENSBMSG00010015160	ENSBMSG00010015244	CD99 (ENSBMSG00010015288)	XG (ENSBMSG00010015381)	GYG2 (ENSBMSG00010015532)	ARSD (ENSBMSG00010015576)	MXRA5 (ENSBMSG00010015613)	ENSBMSG00010015653	PRKX (ENSBMSG00010015692) #23	ENSBMSG00010015744	ENSBMSG00010015782	PUDP (ENSBMSG00010015920)	STS (ENSBMSG00010015954)	PNPLA4 (ENSBMSG00010016004)	ANOS1 (ENSBMSG00010016061)	ENSBMSG00010016105 #22	GPR143 (ENSBMSG00010016163)	SHROOM2 (ENSBMSG00010016228)	ENSBMSG00010016272	WWC3 (ENSBMSG00010016304)	ENSBMSG00010016359	ENSBMSG00010016400	MID1 (ENSBMSG00010016488)	HCCS (ENSBMSG00010016531)	ARHGAP6 (ENSBMSG00010016550)	ENSBMSG00010016602	ENSBMSG00010016698	FRMPD4 (ENSBMSG00010017108)	PRPS2 (ENSBMSG00010018978)	TLR7 (ENSBMSG00010019001)	TLR8 (ENSBMSG00010019022)
Pecora	ANCESTRAL SPECIES	34	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.b ##30	ENSGT00940000170830	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.a ##30	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.a ##30	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.b ##30	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.b #30	ENSGT01030000235420	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.a #30	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a #30	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.b #30	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879	ENSGT00940000154433.a.a
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	1323	ENSCHYG00000009523 ##30	ENSCHYG00000009399 ##30	ENSCHYG00000009306 ##30	ENSCHYG00000009205 ##30	ENSCHYG00000009108 ##30	ENSCHYG00000009073 #30	ENSCHYG00000008821 #30	ENSCHYG00000026359	ENSCHYG00000026346	ENSCHYG00000026317	PUDP (ENSCHYG00000026267)	STS (ENSCHYG00000026228)	PNPLA4 (ENSCHYG00000026179)	ANOS1 (ENSCHYG00000026105)	ENSCHYG00000026081 #22	ENSCHYG00000026062 #22	ENSCHYG00000026051	USP9Y (ENSCHYG00000026024)	ENSCHYG00000026010	UTY (ENSCHYG00000025844)	ENSCHYG00000025789	ENSCHYG00000025773	ENSCHYG00000025769 #21	ENSCHYG00000025751	ENSCHYG00000025723	WWC3 (ENSCHYG00000025613)	CLCN4 (ENSCHYG00000025569)	MID1 (ENSCHYG00000025497)	ENSCHYG00000025477	ARHGAP6 (ENSCHYG00000025448)	AMELY (ENSCHYG00000025353)
Yarkand deer	MODERN SPECIES	1323	ENSCHYG00000009561	ENSCHYG00000009523 ##30	ENSCHYG00000009399 ##30	ENSCHYG00000009306 ##30	ENSCHYG00000009205 ##30	ENSCHYG00000009108 ##30	ENSCHYG00000009073 #30	ENSCHYG00000008821 #30	ENSCHYG00000026359	ENSCHYG00000026346	ENSCHYG00000026317	PUDP (ENSCHYG00000026267)	STS (ENSCHYG00000026228)	PNPLA4 (ENSCHYG00000026179)	ANOS1 (ENSCHYG00000026105)	ENSCHYG00000026081 #22	ENSCHYG00000026062 #22	ENSCHYG00000026051	USP9Y (ENSCHYG00000026024)	ENSCHYG00000026010	UTY (ENSCHYG00000025844)	ENSCHYG00000025789	ENSCHYG00000025773	ENSCHYG00000025769 #21	ENSCHYG00000025751	ENSCHYG00000025723	WWC3 (ENSCHYG00000025613)	CLCN4 (ENSCHYG00000025569)	MID1 (ENSCHYG00000025497)	ENSCHYG00000025477	ARHGAP6 (ENSCHYG00000025448)
Percora_a	ANCESTRAL SPECIES	22	ENSGT00940000162925	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.b ##30	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.b #30	ENSGT01030000235420	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.a #30	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.a.a #30	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.b #30	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.b #30	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151.i	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879	ENSGT00940000154433.a.a
Bovidae	ANCESTRAL SPECIES	23	ENSGT00940000159832 #23	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.b ##30	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.a ##30	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.a ##30	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.b ##30	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.b #30	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.a #30	ENSGT01030000235420.b	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.b #30	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.b #30	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00940000163405.h	ENSGT00390000005717 #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151.i	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879
Caprinae	ANCESTRAL SPECIES	59						ENSGT00940000159095.c.b	ENSGT00940000154433.a.a	ENSGT00940000160879	ENSGT00940000159771	ENSGT00950000182803.B.d.b	ENSGT00950000183035.a.b.a	ENSGT00950000182965.b	ENSGT00390000009151.i	ENSGT00940000153904.a	ENSGT00390000004175	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212
Goat	MODERN SPECIES	29	ENSCHIG00000015718	RAB9A (ENSCHIG00000001895)	TCEANC (ENSCHIG00000016263)	EGFL6 (ENSCHIG00000000498)	ARHGEF9 (ENSCHIG00000016067)	SPIN4 (ENSCHIG00000005442)	ENSCHIG00000007849	ENSCHIG00000006806	FRMPD4 (ENSCHIG00000015208)	MSL3 (ENSCHIG00000008619)	ARHGAP6 (ENSCHIG00000022831)	ENSCHIG00000017454	HCCS (ENSCHIG00000021236)	ENSCHIG00000006968	MID1 (ENSCHIG00000012678)	ENSCHIG00000008291 #22	GPR143 (ENSCHIG00000016990)	SHROOM2 (ENSCHIG00000020188)	ANOS1 (ENSCHIG00000022772)	PNPLA4 (ENSCHIG00000013510)	STS (ENSCHIG00000017504)	PUDP (ENSCHIG00000022092)	ENSCHIG00000007638	ENSCHIG00000018257 #30	ENSCHIG00000022295 #30	ENSCHIG00000014346 #30	ENSCHIG00000024935 #30	ENSCHIG00000016088 #30	ENSCHIG00000024604	ENSCHIG00000015463	ENSCHIG00000024801 ##30
Rambouillet Sheep	MODERN SPECIES	205	ENSOARG00020024285	AMELX (ENSOARG00020024156)	ARHGAP6 (ENSOARG00020024127)	HCCS (ENSOARG00020024113)	PRDM9 (ENSOARG00020023893)	ENSOARG00020023859 #21	ENSOARG00020023846 #21	WWC3 (ENSOARG00020023612)	CLCN4 (ENSOARG00020023510)	MID1 (ENSOARG00020023438)	ENSOARG00020023199	ENSOARG00020023171	ENSOARG00020023143	ENSOARG00020023132	ENSOARG00020023111	ENSOARG00020023008 #22	ANOS1 (ENSOARG00020022822)	PNPLA4 (ENSOARG00020022744)	ENSOARG00020022730	STS (ENSOARG00020022693)	PUDP (ENSOARG00020022646)	ENSOARG00020022535	ENSOARG00020022408 #30	ENSOARG00020022367	ENSOARG00020022337 #30	ENSOARG00020022326 #30	ENSOARG00020022266	ENSOARG00020022239	ENSOARG00020022180 ##30	ENSOARG00020022131 ##30	ENSOARG00020022057
Bovinae	ANCESTRAL SPECIES	32	ENSGT00940000159832 #23	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.b ##30	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.a ##30	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.a ##30	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.b ##30	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.b #30	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.a #30	ENSGT01030000235420.b	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.b #30	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.b #30	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00960000190178	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151.i	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.a.j	ENSGT00940000159771	ENSGT00940000160879	ENSGT00930000150973.A	ENSGT00940000162067
Bos	ANCESTRAL SPECIES	32	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.b ##30	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.a ##30	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.a ##30	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.b.d ##30	ENSGT01030000235420.a.a	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.b #30	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.a #30	ENSGT01030000235420.b	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.b #30	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.b #30	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00960000190178	ENSGT00980000198921.a.a	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000012178.g.b.b.a.b.b	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151.i	ENSGT01000000214694.A.b	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.a.j
Bos_b	ANCESTRAL SPECIES	39	ENSGT00940000159832 #23	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.b ##30	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.c.a ##30	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.a ##30	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.a.b.d ##30	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.b #30	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.a.a #30	ENSGT01030000235420.b	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.a.b #30	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.b.b #30	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00960000190178	ENSGT00980000198921.a.a	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000012178.g.b.b.a.b.b	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151.i	ENSGT01000000214694.A.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.a.j	ENSGT00940000159771
Cow	MODERN SPECIES	177	PRKX (ENSBTAG00000014367) #23	ENSBTAG00000016989 ##30	ENSBTAG00000025951 ##30	ENSBTAG00000025952 ##30	ENSBTAG00000052075 ##30	ENSBTAG00000049442 ##30	ENSBTAG00000053270 #30	ENSBTAG00000012491 #30	BDA20 (ENSBTAG00000016820) #30	MGC151921 (ENSBTAG00000046084) #30	ENSBTAG00000027841	PUDP (ENSBTAG00000000207)	STS (ENSBTAG00000020789)	PNPLA4 (ENSBTAG00000015849)	ANOS1 (ENSBTAG00000001049)	TBL1X (ENSBTAG00000018112) #22	GPR143 (ENSBTAG00000006472)	ENSBTAG00000051024	SHROOM2 (ENSBTAG00000000211)	ENSBTAG00000002158	ENSBTAG00000047068	ENSBTAG00000053828	CLDN34 (ENSBTAG00000046366) #21	ENSBTAG00000055193	ENSBTAG00000009932	ENSBTAG00000035122	ENSBTAG00000048594	WWC3 (ENSBTAG00000013824)	CLCN4 (ENSBTAG00000011121)	MID1 (ENSBTAG00000010152)	MSL3 (ENSBTAG00000009278)
Hybrid Bos Indicus	MODERN SPECIES	315	ENSBIXG00005011658 ##30	ENSBIXG00005001147 ##30	ENSBIXG00005011615 ##30	ENSBIXG00005001130 ##30	ENSBIXG00005000452	ENSBIXG00005011496 #30	ENSBIXG00005011472 #30	ENSBIXG00005011448 #30	ENSBIXG00005011425	ENSBIXG00005011409 #30	ENSBIXG00005001083	ENSBIXG00005011152	STS (ENSBIXG00005011080)	PNPLA4 (ENSBIXG00005011002)	ANOS1 (ENSBIXG00005010908)	ENSBIXG00005010818 #22	GPR143 (ENSBIXG00005010743)	SHROOM2 (ENSBIXG00005000636)	ENSBIXG00005010661	ENSBIXG00005010650	ENSBIXG00005010631	ENSBIXG00005010460	WWC3 (ENSBIXG00005010425)	CLCN4 (ENSBIXG00005010373)	MID1 (ENSBIXG00005010309)	ENSBIXG00005010237	ENSBIXG00005010228	ARHGAP6 (ENSBIXG00005010176)	HCCS (ENSBIXG00005010146)	AMELX (ENSBIXG00005010091)	ENSBIXG00005010072
Bos_a	ANCESTRAL SPECIES	120																ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00960000190178	ENSGT00390000009151.j	ENSGT00390000001798.j	ENSGT00940000155375.d	ENSGT00950000183152.A.`b.b
Wild yak	MODERN SPECIES	1869																ENSBMUG00000006623 #22	GPR143 (ENSBMUG00000006636)	ENSBMUG00000006673	ENSBMUG00000006677
Domestic yak	MODERN SPECIES	70																ENSBGRG00000014666 #22	GPR143 (ENSBGRG00000014824)	ENSBGRG00000014878	ENSBGRG00000014925	ENSBGRG00000015085	USP9Y (ENSBGRG00000015615)	ENSBGRG00000016112	ENSBGRG00000016180	ENSBGRG00000016206	ENSBGRG00000016296	ENSBGRG00000016329	ENSBGRG00000016770	ANOS1 (ENSBGRG00000016848)	PNPLA4 (ENSBGRG00000017194)	STS (ENSBGRG00000017387)	ENSBGRG00000017714
American bison	MODERN SPECIES	3360												ENSBBBG00000017763	AGTR2 (ENSBBBG00000017747)	PNPLA4 (ENSBBBG00000017745)	ANOS1 (ENSBBBG00000017715)	ENSBBBG00000017691 #22	GPR143 (ENSBBBG00000004346)	ENSBBBG00000008006	ENSBBBG00000004335	ENSBBBG00000007432	ENSBBBG00000017461 #21
Siberian musk deer	MODERN SPECIES	1136														PNPLA4 (ENSMMSG00000016282)	ANOS1 (ENSMMSG00000016198)	ENSMMSG00000016174 #22	GPR143 (ENSMMSG00000016124)	ENSMMSG00000016097	ENSMMSG00000016065	ENSMMSG00000016049 #21	ENSMMSG00000016032	ENSMMSG00000016014	ENSMMSG00000013678	WWC3 (ENSMMSG00000013454)	CLCN4 (ENSMMSG00000013407)	MID1 (ENSMMSG00000013368)	HCCS (ENSMMSG00000013339)	ARHGAP6 (ENSMMSG00000013184)	AMELX (ENSMMSG00000013049)	ENSMMSG00000012690	FRMPD4 (ENSMMSG00000012092)
Atlantogenata	ANCESTRAL SPECIES	158									ENSGT01050000244868.a.a.a.b.a.b.a.a.b #30	ENSGT01050000244868.a.a.a.b.a.b.a.a.a ##30	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00520000056155
Xenarthra	ANCESTRAL SPECIES	955															ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00390000005717 #21	ENSGT00520000056155
Armadillo	MODERN SPECIES	2307											ENSDNOG00000031686	ENSDNOG00000049390	ENSDNOG00000037938	ANOS1 (ENSDNOG00000006652)	ENSDNOG00000038716	ENSDNOG00000031121 #22	GPR143 (ENSDNOG00000031449)	ENSDNOG00000048923 #21	ENSDNOG00000040007	ENSDNOG00000030685	ENSDNOG00000033278	ENSDNOG00000045383
Afrotheria	ANCESTRAL SPECIES	207									ENSGT01050000244868.a.a.a.b.a.b.a.a.b #30	ENSGT01050000244868.a.a.a.b.a.b.a.a.a ##30	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212
Tenrec	MODERN SPECIES	521																ENSETEG00000016863 #22
Afrotheria_a	ANCESTRAL SPECIES	207									ENSGT01050000244868.a.a.a.b.a.b.a.a.b #30	ENSGT01050000244868.a.a.a.b.a.b.a.a.a ##30	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212
Elephant	MODERN SPECIES	622							ENSLAFG00000031748 #30	ENSLAFG00000031355 #30	ENSLAFG00000031910 ##30	ENSLAFG00000001970	ENSLAFG00000026463	PUDP (ENSLAFG00000014004)	ENSLAFG00000015149	PNPLA4 (ENSLAFG00000017239)	ANOS1 (ENSLAFG00000003901)	ENSLAFG00000021416 #22	GPR143 (ENSLAFG00000018120)	SHROOM2 (ENSLAFG00000023101)	ENSLAFG00000031009	ENSLAFG00000029108
Hyrax	MODERN SPECIES	378																ENSPCAG00000002608 #22
Marsupialia	ANCESTRAL SPECIES	8	ENSGT00940000163186	ENSGT00940000154344.b	ENSGT00510000049811	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717 #21	ENSGT00520000056155	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879
Opossum	MODERN SPECIES	6	ENSMODG00000047753	ENSMODG00000017524	ENSMODG00000017519	ENSMODG00000046016	ENSMODG00000048866	ENSMODG00000025344	PUDP (ENSMODG00000017505)	ENSMODG00000036654	ENSMODG00000017503	ENSMODG00000014405	PNPLA4 (ENSMODG00000017500)	ENSMODG00000025348	ENSMODG00000042493	ENSMODG00000047950	ANOS1 (ENSMODG00000017475)	ENSMODG00000051600 #22	GPR143 (ENSMODG00000017452)	SHROOM2 (ENSMODG00000017449)	ENSMODG00000025349 #21	ENSMODG00000017446	WWC3 (ENSMODG00000017437)	CLCN4 (ENSMODG00000017425)	MID1 (ENSMODG00000017399)	ENSMODG00000017377	HCCS (ENSMODG00000043457)	AMELX (ENSMODG00000017370)	ARHGAP6 (ENSMODG00000017371)	MSL3 (ENSMODG00000017350)	FRMPD4 (ENSMODG00000017342)	ENSMODG00000028154	ENSMODG00000017334
Actinopterygii	ANCESTRAL SPECIES	79	ENSGT00940000161561	ENSGT00940000162345	ENSGT00940000168183	ENSGT00940000163186	ENSGT00940000164022	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000157160	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000013608	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT01010000222530	ENSGT00940000165039	ENSGT00510000047168	ENSGT00940000158619	ENSGT00940000162067	ENSGT00930000150973.A	ENSGT00940000154433
Neopterygii	ANCESTRAL SPECIES	31	ENSGT01070000255750	ENSGT00940000168183	ENSGT00940000163186	ENSGT00940000164022	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000165158.b	ENSGT00940000162022	ENSGT00940000161153	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000157160	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000013608	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT01010000222530	ENSGT00940000165039	ENSGT00510000047168	ENSGT00940000158619	ENSGT00940000162067	ENSGT00930000150973.A	ENSGT00940000154433
Osteoglossocephalai	ANCESTRAL SPECIES	22	ENSGT00940000161561	ENSGT00940000164022	ENSGT00940000163186	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000177459	ENSGT00940000161140	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000165158.b	ENSGT00940000162022	ENSGT00940000161153	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000157160	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000013608	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00940000164277	ENSGT00940000171137	ENSGT00940000165039	ENSGT00510000047168	ENSGT00940000158619.o	ENSGT01010000222530	ENSGT00940000158619.p
Clupeocephala	ANCESTRAL SPECIES	3	ENSGT00690000101915.i.a	ENSGT00950000183078.a	ENSGT00940000153518.d.b.b	ENSGT00940000154389.a	ENSGT00940000153259.a.b.a.a	ENSGT00940000160405	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000164022	ENSGT00940000177459	ENSGT00940000161140	ENSGT00940000159942.a.d	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000157160	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00940000164277	ENSGT00940000165039	ENSGT00510000047168	ENSGT00940000158619.o	ENSGT00930000150973.A	ENSGT00980000198599	ENSGT00940000154433	ENSGT00940000160879
Euteleosteomorpha	ANCESTRAL SPECIES	6	ENSGT00390000015060	ENSGT00940000161679.a	ENSGT00940000154497.B	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000164480.a.a	ENSGT00940000159150	ENSGT00940000156563.b	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000163715.a	ENSGT01030000234540.A.b	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00940000164277	ENSGT00940000165039	ENSGT00510000047168	ENSGT00940000158619.o	ENSGT00930000150973.A	ENSGT00980000198599	ENSGT00940000154433	ENSGT00940000160879
Acanthomorphata	ANCESTRAL SPECIES	5	ENSGT00390000016421.b.a	ENSGT00940000161679.a	ENSGT00940000154497.B	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000164480.a.a	ENSGT00940000159150	ENSGT00940000156563.b	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000163715.a	ENSGT01030000234540.A.b	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00940000164277	ENSGT00940000165039	ENSGT00510000047168	ENSGT00940000158619.o	ENSGT00930000150973.A	ENSGT01100000263663	ENSGT00940000160879	ENSGT00940000159771
Euacanthomorphacea	ANCESTRAL SPECIES	15	ENSGT00940000161679.a	ENSGT00940000154497.B	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000164480.a.a	ENSGT00940000159150	ENSGT00940000156563.b	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000163715.a	ENSGT00980000198755	ENSGT01030000234540.A.b	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00940000164277	ENSGT00940000165039	ENSGT00510000047168	ENSGT00940000158619.o	ENSGT00930000150973.A	ENSGT01100000263663	ENSGT00940000160879	ENSGT00940000159771
Pinecone sodierfish	MODERN SPECIES	13	DOP1B (ENSMMDG00005002545)	atp5po (ENSMMDG00005002533)	SLC5A3 (ENSMMDG00005002525)	KCNE2 (ENSMMDG00005024209)	casq2 (ENSMMDG00005024206)	vangl1 (ENSMMDG00005024205)	nhlh2 (ENSMMDG00005024204)	ENSMMDG00005024203	ackr3a (ENSMMDG00005024202)	rpe (ENSMMDG00005024201)	igsf3 (ENSMMDG00005024200)	igsf3l (ENSMMDG00005024198)	klhl6 (ENSMMDG00005024197)	ENSMMDG00005024195	ANOS1 (ENSMMDG00005024190)	tbl1x (ENSMMDG00005024185) #22	GPR143 (ENSMMDG00005024183)	ENSMMDG00005024181	mospd2 (ENSMMDG00005024100)	FANCB (ENSMMDG00005024076)	glra2 (ENSMMDG00005024070)	gpm6bb (ENSMMDG00005024063)	ofd1 (ENSMMDG00005024052)	ENSMMDG00005024045	RAB9A (ENSMMDG00005024043)	egfl6 (ENSMMDG00005024040)	ENSMMDG00005024037	FRMPD4 (ENSMMDG00005024023)	ARHGAP6 (ENSMMDG00005023939)	MID1 (ENSMMDG00005023927)	cog3 (ENSMMDG00005023917)
Percomorphaceae	ANCESTRAL SPECIES	23	ENSGT00940000154497.B	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000164480.a.a	ENSGT00940000159150	ENSGT00940000156563.b	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000163715.a	ENSGT00980000198755	ENSGT00940000164826	ENSGT01030000234540.A.b	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00940000164277	ENSGT00940000171137	ENSGT00940000165039	ENSGT00510000047168	ENSGT00940000158619.o	ENSGT00930000150973.A	ENSGT01100000263663	ENSGT00940000160879
Tiger tail seahorse	MODERN SPECIES	456	chaf1b (ENSHCOG00000004695)	ENSHCOG00000004657	DOP1B (ENSHCOG00000004648)	ENSHCOG00000004602	SLC5A3 (ENSHCOG00000004590)	casq2 (ENSHCOG00000004580)	vangl1 (ENSHCOG00000004550)	nxpe3 (ENSHCOG00000004522)	ackr3a (ENSHCOG00000004447)	rpe (ENSHCOG00000004438)	igsf3 (ENSHCOG00000004403)	ENSHCOG00000004371	ENSHCOG00000004343	ENSHCOG00000004329	ANOS1 (ENSHCOG00000004314)	tbl1x (ENSHCOG00000004264) #22	GPR143 (ENSHCOG00000004237)	ENSHCOG00000004215	mospd2 (ENSHCOG00000004209)	ENSHCOG00000004192	glra2 (ENSHCOG00000004168)	gpm6bb (ENSHCOG00000004149)	ENSHCOG00000004133	ENSHCOG00000004111	trappc2 (ENSHCOG00000004104)	RAB9A (ENSHCOG00000004086)	egfl6 (ENSHCOG00000004072)	TLR8 (ENSHCOG00000004040)	TLR7 (ENSHCOG00000004018)	FRMPD4 (ENSHCOG00000003997)	ARHGAP6 (ENSHCOG00000003962)
Percomorphaceae_B	ANCESTRAL SPECIES	17	ENSGT00390000016421.b.a	ENSGT00940000161679.a	ENSGT00940000154497.B	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000164480.a.a	ENSGT00940000156563.b	ENSGT00940000159150	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000163715.a	ENSGT01030000234540.A.b	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT01010000222530	ENSGT00940000165039	ENSGT00510000047168	ENSGT00940000158619.o	ENSGT00940000164277	ENSGT00930000150973.A	ENSGT01100000263663	ENSGT00940000160879
Ovalentaria	ANCESTRAL SPECIES	14	ENSGT00390000016421.b.a	ENSGT00940000161679.a	ENSGT00940000154497.B	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000164480.a.a	ENSGT00940000156563.b	ENSGT00940000159150	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000163715.a	ENSGT01030000234540.A.b	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT01010000222530	ENSGT00940000174370	ENSGT00940000164277	ENSGT00940000158619.o	ENSGT00930000150973.A	ENSGT01100000263663	ENSGT00940000160879	ENSGT00940000159771
Ovalentaria_B	ANCESTRAL SPECIES	12	ENSGT00390000016421.b.a	ENSGT00940000161679.a	ENSGT00940000154497.B	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000164480.a.a	ENSGT00940000156563.b	ENSGT00940000159150	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000164826	ENSGT01030000234540.A.b	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT01010000222530	ENSGT00940000174370	ENSGT00940000164277	ENSGT00940000171137	ENSGT00940000165039	ENSGT00510000047168	ENSGT00940000158619.o	ENSGT00930000150973.A
Pomacentridae	ANCESTRAL SPECIES	17	ENSGT00940000161679.a	ENSGT00940000154497.B	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000164480.a.a	ENSGT00940000159150	ENSGT00940000156563.b	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000163715.a	ENSGT00940000164826	ENSGT01030000234540.A.b	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00940000174370	ENSGT00940000164277	ENSGT00940000158619.o	ENSGT00930000150973.A	ENSGT01100000263663	ENSGT00940000160879	ENSGT00940000159771	ENSGT00950000183035.a.b.a
Pomacentridae_A	ANCESTRAL SPECIES	14	ENSGT00940000166160	ENSGT00390000016421.b.a	ENSGT00940000161679.a	ENSGT00940000154497.B	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000164480.a.a	ENSGT00940000156563.b	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000164826	ENSGT01030000234540.A.b	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00940000174370	ENSGT00940000164277	ENSGT00940000158619.o	ENSGT00930000150973.A	ENSGT01100000263975	ENSGT00940000160879	ENSGT00940000159771	ENSGT00950000183035.a.b.a
Amphiprion	ANCESTRAL SPECIES	8	ENSGT00940000166160	ENSGT00390000016421.b.a	ENSGT00940000161679.a	ENSGT00940000154497.B	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000164480.a.a	ENSGT00940000156563.b	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000164826	ENSGT01030000234540.A.b	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00940000174370	ENSGT00940000164277	ENSGT00940000158619.o	ENSGT00930000150973.A	ENSGT01100000263975	ENSGT00940000160879	ENSGT00940000159771	ENSGT00950000183035.a.b.a
Clown anemonefish	MODERN SPECIES	3411											igsf3 (ENSAOCG00000023918)	igsf3l (ENSAOCG00000023927)	ENSAOCG00000023956	ENSAOCG00000023961	ANOS1 (ENSAOCG00000002499)	tbl1x (ENSAOCG00000024027) #22	GPR143 (ENSAOCG00000024048)
Orange clownfish	MODERN SPECIES	3	chaf1b (ENSAPEG00000024404)	morc3a (ENSAPEG00000024391)	DOP1B (ENSAPEG00000024373)	SLC5A3 (ENSAPEG00000024368)	KCNE2 (ENSAPEG00000024365)	casq2 (ENSAPEG00000024357)	vangl1 (ENSAPEG00000024349)	nhlh2 (ENSAPEG00000024344)	ENSAPEG00000024334	ackr3a (ENSAPEG00000024332)	rpe (ENSAPEG00000024325)	igsf3 (ENSAPEG00000024311)	igsf3l (ENSAPEG00000024301)	ENSAPEG00000024290	ANOS1 (ENSAPEG00000024268)	tbl1x (ENSAPEG00000024249) #22	GPR143 (ENSAPEG00000024242)	ENSAPEG00000024230	mospd2 (ENSAPEG00000024212)	FANCB (ENSAPEG00000024199)	ENSAPEG00000024192	glra2 (ENSAPEG00000024179)	gpm6bb (ENSAPEG00000024169)	ofd1 (ENSAPEG00000024160)	trappc2 (ENSAPEG00000024146)	RAB9A (ENSAPEG00000024142)	egfl6 (ENSAPEG00000024119)	ENSAPEG00000024107	TLR8 (ENSAPEG00000024101)	TLR7 (ENSAPEG00000024097)	FRMPD4 (ENSAPEG00000024083)
Spiny chromis	MODERN SPECIES	548									ackr3a (ENSAPOG00000002126)	rpe (ENSAPOG00000002112)	igsf3 (ENSAPOG00000000040)	igsf3l (ENSAPOG00000002075)	ENSAPOG00000002057	ENSAPOG00000002042	ANOS1 (ENSAPOG00000002018)	tbl1x (ENSAPOG00000001982) #22	GPR143 (ENSAPOG00000001949)	ENSAPOG00000001938	mospd2 (ENSAPOG00000001931)	ENSAPOG00000001915	glra2 (ENSAPOG00000001894)
Bicolor damselfish	MODERN SPECIES	292	chaf1b (ENSSPAG00000006887)	morc3a (ENSSPAG00000006940)	DOP1B (ENSSPAG00000006986)	SLC5A3 (ENSSPAG00000007099)	KCNE2 (ENSSPAG00000007102)	casq2 (ENSSPAG00000007124)	vangl1 (ENSSPAG00000007172)	nhlh2 (ENSSPAG00000007338)	nqo1 (ENSSPAG00000007347)	ackr3a (ENSSPAG00000007360)	rpe (ENSSPAG00000007370)	igsf3 (ENSSPAG00000007404)	igsf3l (ENSSPAG00000007418)	klhl6 (ENSSPAG00000007437)	ANOS1 (ENSSPAG00000007470)	tbl1x (ENSSPAG00000007535) #22	GPR143 (ENSSPAG00000007624)	ENSSPAG00000007649	mospd2 (ENSSPAG00000007669)	ENSSPAG00000007738	glra2 (ENSSPAG00000007787)	gpm6bb (ENSSPAG00000007814)	ofd1 (ENSSPAG00000007851)	trappc2 (ENSSPAG00000007883)	RAB9A (ENSSPAG00000007900)	egfl6 (ENSSPAG00000007916)	ENSSPAG00000007971	TLR8 (ENSSPAG00000007983)	TLR7 (ENSSPAG00000007995)	FRMPD4 (ENSSPAG00000008006)	ARHGAP6 (ENSSPAG00000008071)
Cichlidae	ANCESTRAL SPECIES	14	ENSGT00940000177402	ENSGT00940000166160	ENSGT00390000016421.b.a	ENSGT00940000161679.a	ENSGT00940000154497.B	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000164480.a.a	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000164826	ENSGT01030000234540.A.b	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00940000164277	ENSGT00940000171137	ENSGT00940000165039	ENSGT00510000047168	ENSGT00940000158619.o	ENSGT00930000150973.A	ENSGT01100000263663	ENSGT00940000160879
Pseudocrenilabrinae	ANCESTRAL SPECIES	15	ENSGT00940000177402	ENSGT00940000166160	ENSGT00390000016421.b.a	ENSGT00940000161679.a	ENSGT00940000154497.B	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000164480.a.a	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000164826	ENSGT01030000234540.A.b	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00510000047168	ENSGT00940000158619.o	ENSGT00930000150973.A	ENSGT01100000263663	ENSGT00940000160879.e.b	ENSGT00940000160879.f	ENSGT00940000160879.e.a	ENSGT00940000159771
Nile tilapia	MODERN SPECIES	7	bcl9 (ENSONIG00000015978)	ENSONIG00000035799	chaf1b (ENSONIG00000015981)	DOP1B (ENSONIG00000015987)	SLC5A3 (ENSONIG00000020671)	KCNE2 (ENSONIG00000040885)	casq2 (ENSONIG00000027104)	vangl1 (ENSONIG00000016004)	nhlh2 (ENSONIG00000020673)	rpe (ENSONIG00000016008)	igsf3 (ENSONIG00000016010)	ENSONIG00000042158	ENSONIG00000016013	ENSONIG00000036502	ANOS1 (ENSONIG00000016014)	tbl1x (ENSONIG00000016020) #22	GPR143 (ENSONIG00000016023)	ENSONIG00000016027	mospd2 (ENSONIG00000016029)	ENSONIG00000032474	glra2 (ENSONIG00000016034)	gpm6bb (ENSONIG00000016037)	ofd1 (ENSONIG00000016044)	trappc2 (ENSONIG00000016046)	RAB9A (ENSONIG00000020675)	egfl6 (ENSONIG00000016048)	ENSONIG00000042093	TLR8 (ENSONIG00000031864)	TLR8 (ENSONIG00000027532)	TLR8 (ENSONIG00000029593)	TLR7 (ENSONIG00000020676)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	14	ENSGT00940000177402	ENSGT00940000166160	ENSGT00390000016421.b.a	ENSGT00940000161679.a	ENSGT00940000154497.B	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000164480.a.a	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000164826	ENSGT01030000234540.A.b	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00510000047168	ENSGT00940000158619.o	ENSGT00930000150973.A	ENSGT01100000263663	ENSGT00940000160879.e.b	ENSGT00940000160879.f	ENSGT00940000160879.e.a	ENSGT00940000159771
Lyretail cichlid	MODERN SPECIES	303	ENSNBRG00000007734	ENSNBRG00000007753	DOP1B (ENSNBRG00000007812)	SLC5A3 (ENSNBRG00000007950)	KCNE2 (ENSNBRG00000007957)	casq2 (ENSNBRG00000007969)	vangl1 (ENSNBRG00000008009)	nhlh2 (ENSNBRG00000008044)	ackr3a (ENSNBRG00000008055)	rpe (ENSNBRG00000008060)	igsf3 (ENSNBRG00000008087)	ENSNBRG00000008150	ENSNBRG00000008187	ENSNBRG00000008279	ANOS1 (ENSNBRG00000008319)	tbl1x (ENSNBRG00000008372) #22	GPR143 (ENSNBRG00000008423)	ENSNBRG00000008457	mospd2 (ENSNBRG00000008495)	ENSNBRG00000008536	glra2 (ENSNBRG00000008576)	gpm6bb (ENSNBRG00000008605)	ENSNBRG00000008618	TRAPPC2B (ENSNBRG00000008643)	egfl6 (ENSNBRG00000008684)	tmsb5 (ENSNBRG00000008762)	ENSNBRG00000008775	ENSNBRG00000008789	TLR7 (ENSNBRG00000008807)	FRMPD4 (ENSNBRG00000008838)	ARHGAP6 (ENSNBRG00000008899)
Haplochromini	ANCESTRAL SPECIES	19	ENSGT00940000166160	ENSGT00390000016421.b.a	ENSGT00940000161679.a	ENSGT00940000154497.B	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000164480.a.a	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a.i.b	ENSGT00940000155177.a.i.a	ENSGT00940000164826	ENSGT01030000234540.A.b	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00510000047168	ENSGT00940000158619.o	ENSGT00930000150973.A	ENSGT01100000263663	ENSGT00940000160879.e.b	ENSGT00940000160879.e.a.a.b	ENSGT00940000159771	ENSGT00950000183035.a.b.a
Haplochromini_A	ANCESTRAL SPECIES	19	ENSGT00940000166160	ENSGT00390000016421.b.a	ENSGT00940000161679.a	ENSGT00940000154497.B	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000164480.a.a	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a.i.b	ENSGT00940000155177.a.i.a	ENSGT00940000164826	ENSGT01030000234540.A.b	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00510000047168	ENSGT00940000158619.o	ENSGT00930000150973.A	ENSGT01100000263663	ENSGT00940000160879.e.b	ENSGT00940000160879.e.a.b	ENSGT00940000159771	ENSGT00950000183035.a.b.a
Haplochromini_B	ANCESTRAL SPECIES	17	ENSGT00940000166160	ENSGT00390000016421.b.a	ENSGT00940000161679.a	ENSGT00940000154497.B	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000164480.a.a	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a.i.b	ENSGT00940000155177.a.i.a	ENSGT00940000164826	ENSGT01030000234540.A.b	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00510000047168	ENSGT00940000158619.o	ENSGT00930000150973.A	ENSGT01100000263663	ENSGT00940000160879.e.a.b	ENSGT00940000159771	ENSGT00950000183035.a.b.a	ENSGT00940000153904.a.g
Zebra mbuna	MODERN SPECIES	1098	DOP1B (ENSMZEG00005001983)	ENSMZEG00005002052	SLC5A3 (ENSMZEG00005002056)	KCNE2 (ENSMZEG00005002067)	casq2 (ENSMZEG00005002075)	vangl1 (ENSMZEG00005002094)	nhlh2 (ENSMZEG00005002125)	ackr3a (ENSMZEG00005002132)	rpe (ENSMZEG00005002138)	igsf3 (ENSMZEG00005002160)	ENSMZEG00005002171	ENSMZEG00005002195	ENSMZEG00005002227	ENSMZEG00005002238	ANOS1 (ENSMZEG00005002260)	tbl1x (ENSMZEG00005002314) #22	GPR143 (ENSMZEG00005002341)	ENSMZEG00005002363	mospd2 (ENSMZEG00005002380)	FANCB (ENSMZEG00005002402)	glra2 (ENSMZEG00005002415)	gpm6bb (ENSMZEG00005002441)	ofd1 (ENSMZEG00005002475)	TRAPPC2B (ENSMZEG00005002500)	RAB9A (ENSMZEG00005002511)	egfl6 (ENSMZEG00005002526)	ENSMZEG00005002543	ENSMZEG00005002562	FRMPD4 (ENSMZEG00005002590)	ARHGAP6 (ENSMZEG00005002618)	MID1 (ENSMZEG00005002632)
Eastern happy	MODERN SPECIES	7	morc3a (ENSACLG00000005265)	DOP1B (ENSACLG00000005329)	SLC5A3 (ENSACLG00000005376)	KCNE2 (ENSACLG00000005384)	casq2 (ENSACLG00000005396)	vangl1 (ENSACLG00000005437)	nhlh2 (ENSACLG00000005482)	ackr3a (ENSACLG00000005485)	rpe (ENSACLG00000005497)	igsf3 (ENSACLG00000005518)	ENSACLG00000005742	ENSACLG00000005759	ENSACLG00000005779	ENSACLG00000005794	ANOS1 (ENSACLG00000005803)	tbl1x (ENSACLG00000005835) #22	GPR143 (ENSACLG00000005881)	ENSACLG00000005897	mospd2 (ENSACLG00000005925)	ENSACLG00000005961	glra2 (ENSACLG00000006539)	gpm6bb (ENSACLG00000006580)	ofd1 (ENSACLG00000006606)	TRAPPC2B (ENSACLG00000006638)	RAB9A (ENSACLG00000006647)	egfl6 (ENSACLG00000006652)	ENSACLG00000006660	TLR8 (ENSACLG00000006666)	tmsb4x (ENSACLG00000006672)	TLR8 (ENSACLG00000006673)	TLR8 (ENSACLG00000006683)
P. nyererei	MODERN SPECIES	304	chaf1b (ENSPNYG00000012461)	ENSPNYG00000012436	ENSPNYG00000012414	DOP1B (ENSPNYG00000012358)	SLC5A3 (ENSPNYG00000012344)	KCNE2 (ENSPNYG00000012323)	casq2 (ENSPNYG00000012288)	vangl1 (ENSPNYG00000012260)	nhlh2 (ENSPNYG00000012244)	ackr3a (ENSPNYG00000012239)	rpe (ENSPNYG00000012213)	igsf3 (ENSPNYG00000012189)	igsf3l (ENSPNYG00000012155)	ENSPNYG00000012130	ANOS1 (ENSPNYG00000012090)	tbl1x (ENSPNYG00000012036) #22	GPR143 (ENSPNYG00000012006)	ENSPNYG00000011948	mospd2 (ENSPNYG00000011916)	ENSPNYG00000011890	glra2 (ENSPNYG00000011852)	ENSPNYG00000011836	ofd1 (ENSPNYG00000011783)	TRAPPC2B (ENSPNYG00000011745)	egfl6 (ENSPNYG00000011676)	ENSPNYG00000011650	TLR8 (ENSPNYG00000011635)	ENSPNYG00000011621	TLR7 (ENSPNYG00000011585)	FRMPD4 (ENSPNYG00000011553)	ENSPNYG00000011453
Burton s mouthbrooder	MODERN SPECIES	311	ENSHBUG00000023545	SLC5A3 (ENSHBUG00000023535)	KCNE2 (ENSHBUG00000023528)	casq2 (ENSHBUG00000023521)	vangl1 (ENSHBUG00000023475)	nhlh2 (ENSHBUG00000023405)	ENSHBUG00000023391	ackr3a (ENSHBUG00000023373)	rpe (ENSHBUG00000023369)	igsf3 (ENSHBUG00000023347)	ENSHBUG00000023333	ENSHBUG00000023298	ENSHBUG00000023033	ENSHBUG00000023005	ANOS1 (ENSHBUG00000022998)	tbl1x (ENSHBUG00000022909) #22	GPR143 (ENSHBUG00000022861)	ENSHBUG00000022832	mospd2 (ENSHBUG00000022824)	ENSHBUG00000022795	glra2 (ENSHBUG00000022753)	gpm6bb (ENSHBUG00000022720)	ofd1 (ENSHBUG00000022699)	ENSHBUG00000022689	RAB9A (ENSHBUG00000022669)	egfl6 (ENSHBUG00000022650)	ENSHBUG00000022634	ENSHBUG00000022626	TLR7 (ENSHBUG00000022613)	FRMPD4 (ENSHBUG00000022602)	ARHGAP6 (ENSHBUG00000022559)
Midas cichlid	MODERN SPECIES	992	ENSACIG00000017373	ENSACIG00000017382	DOP1B (ENSACIG00000017406)	SLC5A3 (ENSACIG00000017624)	KCNE2 (ENSACIG00000017630)	casq2 (ENSACIG00000017635)	vangl1 (ENSACIG00000017659)	nhlh2 (ENSACIG00000017676)	ackr3a (ENSACIG00000017679)	rpe (ENSACIG00000017691)	igsf3 (ENSACIG00000017701)	igsf3l (ENSACIG00000017724)	ENSACIG00000017746	ENSACIG00000017774	ANOS1 (ENSACIG00000017781)	tbl1x (ENSACIG00000017803) #22	GPR143 (ENSACIG00000017825)	ENSACIG00000017836	mospd2 (ENSACIG00000017859)	ENSACIG00000017874	glra2 (ENSACIG00000017897)	gpm6bb (ENSACIG00000017921)	ENSACIG00000017997	ENSACIG00000018013	trappc2 (ENSACIG00000018030)	RAB9A (ENSACIG00000018043)	egfl6 (ENSACIG00000018057)	ENSACIG00000018092
Atherinomorphae	ANCESTRAL SPECIES	13	ENSGT00940000161679.a	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000164480.b	ENSGT00940000156563.b	ENSGT00940000159150	ENSGT00940000155010.a	ENSGT01030000235215	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000163715.a	ENSGT01030000234540.A.b	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT01010000222530	ENSGT00940000171137	ENSGT00940000165039	ENSGT00940000164277	ENSGT00940000158619.o	ENSGT00930000150973.A	ENSGT01100000263663	ENSGT00940000160879
Oryzias	ANCESTRAL SPECIES	10	ENSGT00550000074968	ENSGT00940000166160	ENSGT00390000016421.b.a.q	ENSGT00940000161679.a	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000156563.b.m	ENSGT00940000159150	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000163715.a	ENSGT01030000234540.A.b	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00940000164277	ENSGT00940000158619.o	ENSGT00930000150973.A	ENSGT01100000263663	ENSGT00940000160879	ENSGT00940000159771	ENSGT00950000183035.a.b.a	ENSGT00940000153904.a.g
Oryzias_a	ANCESTRAL SPECIES	21	ENSGT00550000074968	ENSGT00940000166160	ENSGT00390000016421.b.a.q	ENSGT00940000161679.a	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000156563.b.m	ENSGT00940000159150	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000163715.a	ENSGT01030000234540.A.b	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT01010000222530	ENSGT00940000158619.o	ENSGT00940000164277	ENSGT00930000150973.A	ENSGT01100000263663	ENSGT00940000160879	ENSGT00940000159771	ENSGT00950000183035.a.b.a
Chinese medaka	MODERN SPECIES	394	acp6 (ENSOSIG00000014876)	bcl9 (ENSOSIG00000014872)	ENSOSIG00000014868	chaf1b (ENSOSIG00000014860)	ENSOSIG00000014859	DOP1B (ENSOSIG00000014858)	SLC5A3 (ENSOSIG00000014857)	casq2 (ENSOSIG00000014364)	vangl1 (ENSOSIG00000014355)	ackr3a (ENSOSIG00000014354)	rpe (ENSOSIG00000014353)	igsf3 (ENSOSIG00000014352)	ENSOSIG00000014350	klhl6 (ENSOSIG00000014347)	ANOS1 (ENSOSIG00000014335)	tbl1x (ENSOSIG00000014322) #22	GPR143 (ENSOSIG00000014321)	ENSOSIG00000014318	mospd2 (ENSOSIG00000013664)	ENSOSIG00000013629	glra2 (ENSOSIG00000013627)	gpm6bb (ENSOSIG00000013620)	ofd1 (ENSOSIG00000013614)	ENSOSIG00000013606	RAB9A (ENSOSIG00000013604)	egfl6 (ENSOSIG00000013600)	ENSOSIG00000013593	TLR8 (ENSOSIG00000013590)	TLR7 (ENSOSIG00000013580)	FRMPD4 (ENSOSIG00000013563)	ARHGAP6 (ENSOSIG00000013552)
Japanese Medaka HdrR	MODERN SPECIES	13	ENSORLG00000024053	DOP1B (ENSORLG00000017902)	SLC5A3 (ENSORLG00000017889)	casq2 (ENSORLG00000017885)	vangl1 (ENSORLG00000017880)	ENSORLG00000007464	ENSORLG00000030361	nqo1 (ENSORLG00000017876)	ackr3a (ENSORLG00000017874)	rpe (ENSORLG00000017873)	igsf3 (ENSORLG00000017870)	igsf3l (ENSORLG00000025661)	klhl6 (ENSORLG00000017867)	ENSORLG00000017860	anos1 (ENSORLG00000017858)	tbl1x (ENSORLG00000017855) #22	GPR143 (ENSORLG00000017851)	ENSORLG00000017849	mospd2 (ENSORLG00000017842)	FANCB (ENSORLG00000017835)	glra2 (ENSORLG00000017830)	gpm6bb (ENSORLG00000017819)	ofd1 (ENSORLG00000017815)	RAB9A (ENSORLG00000017806)	trappc2 (ENSORLG00000025160)	egfl6 (ENSORLG00000017805)	tmsb5 (ENSORLG00000025530)	TLR8 (ENSORLG00000017800)	TLR7 (ENSORLG00000023568)	FRMPD4 (ENSORLG00000017796)	ENSORLG00000028718
Oryzias_b	ANCESTRAL SPECIES	10	ENSGT00550000074968	ENSGT00940000166160.i	ENSGT00390000016421.b.a.r	ENSGT00940000161679.a	ENSGT00390000019377.b.f	ENSGT00940000166160.j	ENSGT00390000012496.a.d	ENSGT00940000156563.b.m	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000163715.a	ENSGT01030000234540.A.b	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00940000164277	ENSGT00940000158619.o	ENSGT00930000150973.A	ENSGT00980000198599	ENSGT00940000160879	ENSGT00940000159771	ENSGT00950000183035.a.b.a	ENSGT00940000153904.a.g
Indian medaka	MODERN SPECIES	18	casq2 (ENSOMEG00000007803)	ENSOMEG00000007783	ENSOMEG00000007772	ENSOMEG00000007764	ENSOMEG00000007752	vangl1 (ENSOMEG00000000817)	ENSOMEG00000007696	ENSOMEG00000007678	ackr3a (ENSOMEG00000007664)	rpe (ENSOMEG00000000188)	igsf3 (ENSOMEG00000007603)	ENSOMEG00000007569	klhl6 (ENSOMEG00000007526)	ENSOMEG00000007452	ANOS1 (ENSOMEG00000007271)	tbl1x (ENSOMEG00000007223) #22	GPR143 (ENSOMEG00000007184)	ENSOMEG00000007151	mospd2 (ENSOMEG00000007120)	ENSOMEG00000007056	glra2 (ENSOMEG00000006998)	gpm6bb (ENSOMEG00000006960)	ofd1 (ENSOMEG00000006906)	trappc2 (ENSOMEG00000006843)	RAB9A (ENSOMEG00000000162)	egfl6 (ENSOMEG00000006818)	tmsb4x (ENSOMEG00000006789)	TLR8 (ENSOMEG00000006759)	TLR7 (ENSOMEG00000006776)	FRMPD4 (ENSOMEG00000001044)	ENSOMEG00000006712
Javanese ricefish	MODERN SPECIES	13	chaf1b (ENSOJAG00000008818)	ENSOJAG00000008856	ENSOJAG00000008881	SLC5A3 (ENSOJAG00000009006)	casq2 (ENSOJAG00000009033)	ENSOJAG00000009344	vangl1 (ENSOJAG00000009411)	ENSOJAG00000009424	ackr3a (ENSOJAG00000009475)	rpe (ENSOJAG00000009482)	igsf3 (ENSOJAG00000009511)	ENSOJAG00000009562	klhl6 (ENSOJAG00000009631)	ENSOJAG00000009664	ANOS1 (ENSOJAG00000009704)	tbl1x (ENSOJAG00000010027) #22	GPR143 (ENSOJAG00000010280)	ENSOJAG00000010319	mospd2 (ENSOJAG00000010431)	ENSOJAG00000011650	glra2 (ENSOJAG00000011665)	gpm6bb (ENSOJAG00000011724)	ofd1 (ENSOJAG00000011762)	trappc2 (ENSOJAG00000011776)	RAB9A (ENSOJAG00000011817)	egfl6 (ENSOJAG00000013462)	ENSOJAG00000013540	TLR8 (ENSOJAG00000013556)	TLR7 (ENSOJAG00000013562)	FRMPD4 (ENSOJAG00000013583)	ARHGAP6 (ENSOJAG00000013773)
Cyprinodontiformes	ANCESTRAL SPECIES	15	ENSGT00940000177402	ENSGT00940000166160	ENSGT00390000016421.b.a	ENSGT00940000161679.a	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000164480.b	ENSGT00940000156563.b	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000163715.a	ENSGT01030000234540.A.b	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00940000164277	ENSGT00940000158619.o	ENSGT00930000150973.A	ENSGT01100000263913	ENSGT00940000160879	ENSGT00940000159771	ENSGT00950000183035.a.b.a	ENSGT00940000153904.a.g
Aplocheiloidei	ANCESTRAL SPECIES	6	ENSGT00390000016421.b.a	ENSGT00940000161679.a	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000164480.b	ENSGT00940000159150	ENSGT00940000155010.a	ENSGT00940000156563.b	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000163715.a	ENSGT00980000198755	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00940000164277	ENSGT00940000158619.o	ENSGT00930000150973.A	ENSGT01050000246659	ENSGT01100000263913	ENSGT00940000160879	ENSGT00940000159771	ENSGT00950000183035.a.b.a
Mangrove rivulus	MODERN SPECIES	66	DOP1B (ENSKMAG00000018414)	SLC5A3 (ENSKMAG00000018395)	casq2 (ENSKMAG00000018355)	vangl1 (ENSKMAG00000018331)	nqo1 (ENSKMAG00000018308)	ENSKMAG00000018273	NQO2 (ENSKMAG00000018255)	ackr3a (ENSKMAG00000018245)	rpe (ENSKMAG00000018226)	igsf3 (ENSKMAG00000018207)	igsf3l (ENSKMAG00000018184)	klhl6 (ENSKMAG00000018152)	ENSKMAG00000018119	ENSKMAG00000018104	ANOS1 (ENSKMAG00000018037)	tbl1x (ENSKMAG00000017972) #22	GPR143 (ENSKMAG00000017944)	ENSKMAG00000017916	mospd2 (ENSKMAG00000017887)	ENSKMAG00000017843	glra2 (ENSKMAG00000017775)	gpm6bb (ENSKMAG00000017725)	ofd1 (ENSKMAG00000017688)	trappc2 (ENSKMAG00000017671)	RAB9A (ENSKMAG00000017662)	egfl6 (ENSKMAG00000017622)	ENSKMAG00000017601	tmsb5 (ENSKMAG00000017584)	TLR8 (ENSKMAG00000017578)	TLR7 (ENSKMAG00000017558)	FRMPD4 (ENSKMAG00000017482)
Turquoise killifish	MODERN SPECIES	1623	DOPEY2 (ENSNFUG00015007747)	SLC5A3 (ENSNFUG00015007757)	ENSNFUG00015007759	casq2 (ENSNFUG00015007835)	vangl1 (ENSNFUG00015008448)	ENSNFUG00015008472	NQO2 (ENSNFUG00015008486)	RPE (ENSNFUG00015008506)	igsf3 (ENSNFUG00015008515)	ENSNFUG00015008521	igsf3l (ENSNFUG00015008524)	KLHL6 (ENSNFUG00015008532)	ENSNFUG00015008537	ENSNFUG00015008548	KAL1 (ENSNFUG00015008575)	tbl1x (ENSNFUG00015008718) #22	GPR143 (ENSNFUG00015008745)	ENSNFUG00015008748	MOSPD2 (ENSNFUG00015008752)	ENSNFUG00015008758	glra2 (ENSNFUG00015008767)	trappc2 (ENSNFUG00015008780)	gpm6bb (ENSNFUG00015008795)	ofd1 (ENSNFUG00015008828)	RAB9A (ENSNFUG00015009186)	EGFL6 (ENSNFUG00015009194)	ENSNFUG00015009214	TLR8 (ENSNFUG00015009237)	TLR7 (ENSNFUG00015009290)	TLR7 (ENSNFUG00015009312)	ARHGAP6 (ENSNFUG00015009347)
Cyprinodontoidei	ANCESTRAL SPECIES	13	ENSGT00940000177402	ENSGT00940000166160	ENSGT00390000016421.b.a	ENSGT00940000161679.a	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000164480.b	ENSGT00940000156563.b	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000163715.a	ENSGT01030000234540.A.b	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00940000164277	ENSGT00940000158619.o	ENSGT00930000150973.A	ENSGT01100000263913	ENSGT00940000160879	ENSGT00940000159771	ENSGT00950000183035.a.b.a	ENSGT00940000153904.a.g
Poeciliinae	ANCESTRAL SPECIES		ENSGT00550000074968	ENSGT00940000177402	ENSGT00940000166160	ENSGT00390000016421.b.a	ENSGT00940000161679.a	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000156563.b	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000163715.a	ENSGT01030000234540.A.b	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00940000164277	ENSGT00940000158619.o	ENSGT00930000150973.A	ENSGT01100000263913	ENSGT00940000160879	ENSGT00940000159771	ENSGT00950000183035.a.b.a	ENSGT00940000153904.a.g
Poecilia	ANCESTRAL SPECIES	13	ENSGT00940000177402	ENSGT00940000166160	ENSGT00390000016421.b.a	ENSGT00940000161679.a	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000156563.b.e	ENSGT00940000156563.b.f	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000163715.a	ENSGT01030000234540.A.b	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730.j	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00940000164277	ENSGT00940000158619.o	ENSGT00930000150973.A	ENSGT00940000160879	ENSGT00940000159771	ENSGT00950000183035.a.b.a	ENSGT00940000153904.a.g	ENSGT00940000155821.c.a
NAME_6	ANCESTRAL SPECIES	20	ENSGT00550000074968	ENSGT00940000177402	ENSGT00940000166160	ENSGT00390000016421.b.a	ENSGT00940000161679.a	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000156563.b.e	ENSGT00940000156563.b.f	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000163715.a	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730.i	ENSGT00940000158730.j	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00940000164277	ENSGT00940000158619.o	ENSGT00930000150973.A	ENSGT00940000160879	ENSGT00940000159771	ENSGT00950000183035.a.b.a	ENSGT00940000153904.a.g
Sailfin molly	MODERN SPECIES	905															ANOS1 (ENSPLAG00000015300)	tbl1x (ENSPLAG00000015242) #22	GPR143 (ENSPLAG00000015212)
Amazon molly	MODERN SPECIES	268	acp6 (ENSPFOG00000000741)	bcl9 (ENSPFOG00000000816)	ENSPFOG00000000866	chaf1b (ENSPFOG00000000916)	DOP1B (ENSPFOG00000001181)	SLC5A3 (ENSPFOG00000020138)	casq2 (ENSPFOG00000001603)	vangl1 (ENSPFOG00000001704)	NQO2 (ENSPFOG00000001802)	ackr3a (ENSPFOG00000020140)	rpe (ENSPFOG00000001914)	igsf3 (ENSPFOG00000002036)	ENSPFOG00000002302	klhl6 (ENSPFOG00000002369)	ANOS1 (ENSPFOG00000002437)	tbl1x (ENSPFOG00000002848) #22	GPR143 (ENSPFOG00000002963)	ENSPFOG00000003031	mospd2 (ENSPFOG00000003096)	ENSPFOG00000003321	glra2 (ENSPFOG00000003430)	mospd2 (ENSPFOG00000003570)	glra2 (ENSPFOG00000003718)	gpm6bb (ENSPFOG00000003962)	ofd1 (ENSPFOG00000004011)	trappc2 (ENSPFOG00000004222)	trappc2 (ENSPFOG00000004286)	RAB9A (ENSPFOG00000024704)	egfl6 (ENSPFOG00000004351)	TLR8 (ENSPFOG00000024128)	TLR7 (ENSPFOG00000023980)
Guppy	MODERN SPECIES	450	ENSPREG00000000975	DOP1B (ENSPREG00000001003)	SLC5A3 (ENSPREG00000001022)	casq2 (ENSPREG00000001027)	vangl1 (ENSPREG00000001072)	ENSPREG00000001082	ENSPREG00000001100	ENSPREG00000001163	ackr3a (ENSPREG00000001170)	rpe (ENSPREG00000001185)	igsf3 (ENSPREG00000001212)	klhl6 (ENSPREG00000001224)	ENSPREG00000001251	ENSPREG00000001291	ANOS1 (ENSPREG00000001327)	tbl1x (ENSPREG00000001406) #22	GPR143 (ENSPREG00000001452)	ENSPREG00000001482	mospd2 (ENSPREG00000001547)	FANCB (ENSPREG00000001642)	glra2 (ENSPREG00000001718)	gpm6bb (ENSPREG00000001770)	ofd1 (ENSPREG00000001791)	trappc2 (ENSPREG00000001806)	RAB9A (ENSPREG00000001832)	egfl6 (ENSPREG00000001851)	tmsb5 (ENSPREG00000001883)	ENSPREG00000001890	ENSPREG00000001909	TLR7 (ENSPREG00000001927)	FRMPD4 (ENSPREG00000001939)
Platyfish	MODERN SPECIES	21	morc3a (ENSXMAG00000004110)	ENSXMAG00000024686	DOP1B (ENSXMAG00000004151)	SLC5A3 (ENSXMAG00000019568)	casq2 (ENSXMAG00000004185)	vangl1 (ENSXMAG00000004211)	ENSXMAG00000004231	ENSXMAG00000022658	ackr3a (ENSXMAG00000019569)	rpe (ENSXMAG00000004245)	igsf3 (ENSXMAG00000004255)	ENSXMAG00000004264	klhl6 (ENSXMAG00000024721)	ENSXMAG00000004290	ANOS1 (ENSXMAG00000004292)	tbl1x (ENSXMAG00000004308) #22	GPR143 (ENSXMAG00000004334)	ENSXMAG00000004342	mospd2 (ENSXMAG00000004358)	FANCB (ENSXMAG00000004369)	glra2 (ENSXMAG00000004370)	gpm6bb (ENSXMAG00000004381)	ofd1 (ENSXMAG00000004394)	trappc2 (ENSXMAG00000024008)	RAB9A (ENSXMAG00000019570)	egfl6 (ENSXMAG00000004416)	tmsb5 (ENSXMAG00000024589)	TLR8 (ENSXMAG00000004433)	TLR7 (ENSXMAG00000004434)	FRMPD4 (ENSXMAG00000004435)	ENSXMAG00000022196
NAME_4	ANCESTRAL SPECIES	94															ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00940000171137	ENSGT00940000165039	ENSGT00940000164277	ENSGT00940000158619.o	ENSGT00930000150973.A	ENSGT01100000263913	ENSGT00940000160879	ENSGT00940000159771
Mummichog	MODERN SPECIES	2311																tbl1x (ENSFHEG00000020709) #22	GPR143 (ENSFHEG00000020839)	ENSFHEG00000020861	mospd2 (ENSFHEG00000020881)	FANCB (ENSFHEG00000020961)	glra2 (ENSFHEG00000020990)	gpm6bb (ENSFHEG00000021029)	ENSFHEG00000021060	ENSFHEG00000021078	trappc2 (ENSFHEG00000021100)	RAB9A (ENSFHEG00000021111)	egfl6 (ENSFHEG00000021203)	tmsb5 (ENSFHEG00000021217)	TLR8 (ENSFHEG00000021247)	TLR7 (ENSFHEG00000021280)	FRMPD4 (ENSFHEG00000021338)
Sheepshead minnow	MODERN SPECIES	864															ANOS1 (ENSCVAG00000016003)	tbl1x (ENSCVAG00000016075) #22	GPR143 (ENSCVAG00000016090)	ENSCVAG00000016100	mospd2 (ENSCVAG00000016154)	ENSCVAG00000016218	glra2 (ENSCVAG00000016228)	gpm6bb (ENSCVAG00000016250)	ofd1 (ENSCVAG00000016272)	trappc2 (ENSCVAG00000016289)	RAB9A (ENSCVAG00000016312)
Percomorphaceae_C	ANCESTRAL SPECIES	13	ENSGT00390000016421.b.a	ENSGT00940000161679.a	ENSGT00940000154497.B	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000164480.a.a	ENSGT00940000159150	ENSGT00940000156563.b	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000163715.a	ENSGT01030000234540.A.b	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00510000047168	ENSGT00940000165039	ENSGT00940000164277	ENSGT00940000158619.o	ENSGT00930000150973.A	ENSGT01100000263663	ENSGT00940000160879	ENSGT00940000159771
Eupercaria	ANCESTRAL SPECIES	18	ENSGT00390000016421.b.a	ENSGT00940000161679.a	ENSGT00940000154497.B	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000164480.a.a	ENSGT00940000159150	ENSGT00940000156563.b	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000163715.a	ENSGT01030000234540.A.b	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00940000164277	ENSGT00940000158619.o	ENSGT00930000150973.A	ENSGT01100000263663	ENSGT00940000160879	ENSGT00940000159771	ENSGT00950000183035.a.b.a	ENSGT00940000153904.a.g
Tetraodontidae	ANCESTRAL SPECIES		ENSGT00940000177223	ENSGT00550000074968	ENSGT00940000166160	ENSGT00390000016421.b.a	ENSGT00940000161679.a	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000156563.b	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000163715.a	ENSGT01030000234540.A.b	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00940000164277	ENSGT00940000158619.o	ENSGT00930000150973.A	ENSGT00940000159771	ENSGT00950000183035.a.b.a	ENSGT00940000153904.a.g	ENSGT00940000155821.c.a	ENSGT00390000015682
Tetraodon	MODERN SPECIES	13	acp6 (ENSTNIG00000013938)	bcl9 (ENSTNIG00000013939)	chaf1b (ENSTNIG00000013940)	ENSTNIG00000013941	DOP1B (ENSTNIG00000013942)	SLC5A3 (ENSTNIG00000013943)	casq2 (ENSTNIG00000013944)	vangl1 (ENSTNIG00000013945)	ackr3a (ENSTNIG00000013946)	rpe (ENSTNIG00000013947)	igsf3 (ENSTNIG00000001298)	igsf3 (ENSTNIG00000013948)	ENSTNIG00000013949	klhl6 (ENSTNIG00000013950)	ANOS1 (ENSTNIG00000013951)	tbl1x (ENSTNIG00000013952) #22	GPR143 (ENSTNIG00000013953)	ENSTNIG00000013954	mospd2 (ENSTNIG00000013955)	FANCB (ENSTNIG00000013956)	glra2 (ENSTNIG00000013957)	gpm6bb (ENSTNIG00000013958)	RAB9A (ENSTNIG00000001195)	egfl6 (ENSTNIG00000013959)	TLR7 (ENSTNIG00000013960)	FRMPD4 (ENSTNIG00000013961)	ARHGAP6 (ENSTNIG00000013962)	MID1 (ENSTNIG00000013963)	cog3 (ENSTNIG00000013964)	ENSTNIG00000000507	EDNRB (ENSTNIG00000013965)
Fugu	MODERN SPECIES		ENSTRUG00000023542	DOP1B (ENSTRUG00000011430)	SLC5A3 (ENSTRUG00000011373)	casq2 (ENSTRUG00000011077)	vangl1 (ENSTRUG00000010956)	ENSTRUG00000010839	ackr3a (ENSTRUG00000010803)	rpe (ENSTRUG00000010734)	igsf3 (ENSTRUG00000010573)	ENSTRUG00000010560	klhl6 (ENSTRUG00000010244)	ENSTRUG00000002221	ENSTRUG00000001492	ENSTRUG00000031904	ANOS1 (ENSTRUG00000009929)	tbl1x (ENSTRUG00000009728) #22	GPR143 (ENSTRUG00000009593)	ENSTRUG00000009477	mospd2 (ENSTRUG00000009311)	ENSTRUG00000009246	glra2 (ENSTRUG00000009077)	gpm6bb (ENSTRUG00000008825)	ofd1 (ENSTRUG00000022251)	trappc2 (ENSTRUG00000027675)	RAB9A (ENSTRUG00000008698)	egfl6 (ENSTRUG00000008437)	ENSTRUG00000030459	ENSTRUG00000000120	ENSTRUG00000026067	ENSTRUG00000028268	TLR7 (ENSTRUG00000008051)
Eupecaria_A	ANCESTRAL SPECIES	18	ENSGT00390000016421.b.a	ENSGT00940000161679.a	ENSGT00940000154497.B	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000164480.a.a	ENSGT00940000159150	ENSGT00940000156563.b	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000163715.a	ENSGT01030000234540.A.b	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00940000164277	ENSGT00940000158619.o	ENSGT00930000150973.A	ENSGT01100000263663	ENSGT00940000160879	ENSGT00940000159771	ENSGT00950000183035.a.b.a	ENSGT00940000153904.a.g
Ballan wrasse	MODERN SPECIES	959																tbl1x (ENSLBEG00000018816) #22	GPR143 (ENSLBEG00000018796)	ENSLBEG00000018753
Eupecaria_B	ANCESTRAL SPECIES	18	ENSGT00940000161679.a	ENSGT00940000154497.B	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000164480.a.a	ENSGT00940000156563.b	ENSGT00940000159150	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000163715.a	ENSGT00980000198755	ENSGT01030000234540.A.b	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00940000164277	ENSGT00940000158619.o	ENSGT00930000150973.A	ENSGT01100000263663	ENSGT00940000160879	ENSGT00940000159771	ENSGT00950000183035.a.b.a	ENSGT00940000153904.a.g
Eupecaria_C	ANCESTRAL SPECIES	21	ENSGT00940000166160	ENSGT00390000016421.b.a	ENSGT00940000161679.a	ENSGT00940000154497.B	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000164480.a.a	ENSGT00940000156563.b	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000163715.a	ENSGT01030000234540.A.b	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00940000164277	ENSGT00940000158619.o	ENSGT00930000150973.A	ENSGT01100000263663	ENSGT00940000160879	ENSGT00940000159771	ENSGT00950000183035.a.b.a	ENSGT00940000153904.a.g
Gilthead seabream	MODERN SPECIES	23	DOP1B (ENSSAUG00010015009)	SLC5A3 (ENSSAUG00010015057)	KCNE2 (ENSSAUG00010015058)	casq2 (ENSSAUG00010015074)	vangl1 (ENSSAUG00010015290)	nhlh2 (ENSSAUG00010015293)	ENSSAUG00010015294	ACKR3 (ENSSAUG00010015295)	rpe (ENSSAUG00010015297)	igsf3 (ENSSAUG00010015301)	igsf3l (ENSSAUG00010015307)	klhl6 (ENSSAUG00010015319)	ENSSAUG00010015320	ENSSAUG00010015334	ANOS1 (ENSSAUG00010015338)	tbl1x (ENSSAUG00010015343) #22	GPR143 (ENSSAUG00010015345)	ENSSAUG00010015350	mospd2 (ENSSAUG00010015353)	ENSSAUG00010015443	glra2 (ENSSAUG00010015445)	ENSSAUG00010015507	ENSSAUG00010015509	gpm6bb (ENSSAUG00010015511)	ofd1 (ENSSAUG00010015521)	trappc2 (ENSSAUG00010015532)	RAB9A (ENSSAUG00010015533)	egfl6 (ENSSAUG00010015540)	ENSSAUG00010015545	TLR8 (ENSSAUG00010015546)	TLR7 (ENSSAUG00010015548)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	18	ENSGT00550000074968	ENSGT00940000166160	ENSGT00390000016421.b.a	ENSGT00940000161679.a	ENSGT00940000154497.B	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000164480.a.a	ENSGT00940000156563.b	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT01030000234540.A.b	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00940000164277	ENSGT00940000158619.o	ENSGT00930000150973.A	ENSGT01100000263663	ENSGT00940000160879	ENSGT00940000159771	ENSGT00950000183035.a.b.a	ENSGT00940000153904.a.g
Large yellow croaker	MODERN SPECIES	490	ENSLCRG00005013433	chaf1b (ENSLCRG00005013408)	morc3a (ENSLCRG00005013407)	DOP1B (ENSLCRG00005013402)	SLC5A3 (ENSLCRG00005013400)	KCNE2 (ENSLCRG00005013399)	casq2 (ENSLCRG00005011359)	vangl1 (ENSLCRG00005011331)	nhlh2 (ENSLCRG00005011330)	NQO1 (ENSLCRG00005011329)	ACKR3 (ENSLCRG00005011328)	rpe (ENSLCRG00005011325)	igsf3 (ENSLCRG00005011321)	igsf3l (ENSLCRG00005011310)	ANOS1 (ENSLCRG00005011295)	tbl1x (ENSLCRG00005011281) #22	GPR143 (ENSLCRG00005011274)	ENSLCRG00005011273	mospd2 (ENSLCRG00005010404)	ENSLCRG00005010389	glra2 (ENSLCRG00005010386)	gpm6bb (ENSLCRG00005010380)	ofd1 (ENSLCRG00005010366)	trappc2 (ENSLCRG00005010363)	RAB9A (ENSLCRG00005010362)	RAB9A (ENSLCRG00005010361)	egfl6 (ENSLCRG00005010354)	ENSLCRG00005010348	TLR8 (ENSLCRG00005010347)	TLR7 (ENSLCRG00005010346)	FRMPD4 (ENSLCRG00005010330)
European seabass	MODERN SPECIES	5	ENSDLAG00005025564	ENSDLAG00005030393	DOP1B (ENSDLAG00005025560)	ENSDLAG00005026388	casq2 (ENSDLAG00005025524)	ENSDLAG00005025518	nhlh2 (ENSDLAG00005028018)	ENSDLAG00005030238	ENSDLAG00005025501	ENSDLAG00005032719	ENSDLAG00005025497	ENSDLAG00005025492	ENSDLAG00005025484	ENSDLAG00005025473	ANOS1 (ENSDLAG00005025466)	tbl1x (ENSDLAG00005025457) #22	GPR143 (ENSDLAG00005025455)	ENSDLAG00005025452	ENSDLAG00005029153	mospd2 (ENSDLAG00005025436)	ENSDLAG00005025430	glra2 (ENSDLAG00005025416)	gpm6bb (ENSDLAG00005025410)	ofd1 (ENSDLAG00005025405)	ENSDLAG00005025400	egfl6 (ENSDLAG00005025397)	ENSDLAG00005025396	ENSDLAG00005025394	ARHGAP6 (ENSDLAG00005025349)	ENSDLAG00005025338	FRMPD4 (ENSDLAG00005025388)
Perciformes	ANCESTRAL SPECIES	20	ENSGT00390000016421.b.a	ENSGT00940000161679.a	ENSGT00940000154497.B	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000164480.a.a	ENSGT00940000159150	ENSGT00940000156563.b	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000163715.a	ENSGT00980000198755	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00940000164277	ENSGT00940000158619.o	ENSGT00930000150973.A	ENSGT01100000263663	ENSGT00940000160879	ENSGT00940000159771	ENSGT00950000183035.a.b.a	ENSGT00940000153904.a.g
Cottioidei	ANCESTRAL SPECIES	14	ENSGT00390000016421.b.a	ENSGT00940000161679.a	ENSGT00940000154497.B	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000164480.a.a	ENSGT00940000159150	ENSGT00940000156563.b	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000163715.a	ENSGT00980000198755	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00940000164277	ENSGT00940000158619.o	ENSGT00930000150973.A	ENSGT00940000160879	ENSGT00940000159771	ENSGT00950000183035.a.b.a	ENSGT00940000153904.a.g	ENSGT00940000155821.c.a
Stickleback	MODERN SPECIES	16	nhlh2 (ENSGACG00000003751)	nqo1 (ENSGACG00000003752)	ENSGACG00000003754	nqo1 (ENSGACG00000003762)	nqo1 (ENSGACG00000003764)	ENSGACG00000003769	ENSGACG00000003770	nqo1 (ENSGACG00000003776)	ENSGACG00000003783	ENSGACG00000003788	rpe (ENSGACG00000003798)	igsf3 (ENSGACG00000003812)	igsf3l (ENSGACG00000003818)	klhl6 (ENSGACG00000003820)	ANOS1 (ENSGACG00000003830)	tbl1x (ENSGACG00000003842) #22	GPR143 (ENSGACG00000003851)	ENSGACG00000003863	mospd2 (ENSGACG00000003867)	FANCB (ENSGACG00000003896)	glra2 (ENSGACG00000003900)	gpm6bb (ENSGACG00000003946)	ofd1 (ENSGACG00000003967)	RAB9A (ENSGACG00000003972)	egfl6 (ENSGACG00000003978)	TLR8 (ENSGACG00000003992)	TLR7 (ENSGACG00000003996)	FRMPD4 (ENSGACG00000004014)	ARHGAP6 (ENSGACG00000004025)	MID1 (ENSGACG00000004031)	cog3 (ENSGACG00000004045)
Lumpfish	MODERN SPECIES	13	SLC5A3 (ENSCLMG00005015200)	KCNE2 (ENSCLMG00005015210)	casq2 (ENSCLMG00005015211)	vangl1 (ENSCLMG00005015212)	nhlh2 (ENSCLMG00005015215)	NQO1 (ENSCLMG00005015216)	ENSCLMG00005015251	ENSCLMG00005015252	ackr3a (ENSCLMG00005015253)	rpe (ENSCLMG00005015254)	igsf3 (ENSCLMG00005015255)	igsf3l (ENSCLMG00005015260)	klhl6 (ENSCLMG00005015262)	ENSCLMG00005015263	ANOS1 (ENSCLMG00005015265)	tbl1x (ENSCLMG00005015267) #22	GPR143 (ENSCLMG00005015279)	ENSCLMG00005015285	mospd2 (ENSCLMG00005015294)	ENSCLMG00005015460	glra2 (ENSCLMG00005015462)	gpm6bb (ENSCLMG00005015475)	ofd1 (ENSCLMG00005015476)	trappc2 (ENSCLMG00005015477)	RAB9A (ENSCLMG00005015478)	egfl6 (ENSCLMG00005015479)	ENSCLMG00005015481	TLR8 (ENSCLMG00005015482)	TLR7 (ENSCLMG00005015486)	FRMPD4 (ENSCLMG00005015487)	ARHGAP6 (ENSCLMG00005015489)
Perciformes_a	ANCESTRAL SPECIES	21	ENSGT00940000166160	ENSGT00390000016421.b.a	ENSGT00940000154497.B	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000164480.a.a	ENSGT00940000159150	ENSGT00940000156563.b	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000163715.a	ENSGT01030000234540.A.b	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00940000164277	ENSGT00940000158619.o	ENSGT00930000150973.A	ENSGT01100000263663	ENSGT00940000160879	ENSGT00940000159771	ENSGT00950000183035.a.b.a	ENSGT00940000153904.a.g
Channel bull blenny	MODERN SPECIES	13	ENSCGOG00000021356	chaf1b (ENSCGOG00000021364)	morc3a (ENSCGOG00000021429)	nqo1 (ENSCGOG00000021438)	DOP1B (ENSCGOG00000021457)	casq2 (ENSCGOG00000021707)	vangl1 (ENSCGOG00000021713)	nhlh2 (ENSCGOG00000021714)	ackr3a (ENSCGOG00000021715)	rpe (ENSCGOG00000021716)	igsf3 (ENSCGOG00000021723)	igsf3l (ENSCGOG00000021728)	klhl6 (ENSCGOG00000021751)	ENSCGOG00000021753	ANOS1 (ENSCGOG00000021760)	tbl1x (ENSCGOG00000021809) #22	GPR143 (ENSCGOG00000022078)	ENSCGOG00000022096	mospd2 (ENSCGOG00000022100)	FANCB (ENSCGOG00000022237)	glra2 (ENSCGOG00000022242)	gpm6bb (ENSCGOG00000022249)	ENSCGOG00000022251	ofd1 (ENSCGOG00000022255)	trappc2 (ENSCGOG00000022285)	RAB9A (ENSCGOG00000022298)	egfl6 (ENSCGOG00000022299)	ENSCGOG00000022302	TLR8 (ENSCGOG00000022306)	TLR7 (ENSCGOG00000022310)	FRMPD4 (ENSCGOG00000022313)
Pike perch	MODERN SPECIES	1	chaf1b (ENSSLUG00000021711)	morc3a (ENSSLUG00000021725)	DOP1B (ENSSLUG00000021749)	KCNE2 (ENSSLUG00000000048)	casq2 (ENSSLUG00000000084)	vangl1 (ENSSLUG00000000129)	nhlh2 (ENSSLUG00000000137)	ENSSLUG00000000140	ackr3a (ENSSLUG00000000145)	rpe (ENSSLUG00000000148)	igsf3 (ENSSLUG00000000157)	igsf3l (ENSSLUG00000000172)	klhl6 (ENSSLUG00000000186)	ENSSLUG00000000197	ANOS1 (ENSSLUG00000000213)	tbl1x (ENSSLUG00000000230) #22	GPR143 (ENSSLUG00000000256)	ENSSLUG00000000266	mospd2 (ENSSLUG00000000271)	ENSSLUG00000000284	glra2 (ENSSLUG00000000295)	gpm6bb (ENSSLUG00000000301)	ofd1 (ENSSLUG00000000322)	ENSSLUG00000000340	RAB9A (ENSSLUG00000000344)	egfl6 (ENSSLUG00000000352)	ENSSLUG00000000366	TLR8 (ENSSLUG00000000367)	TLR7 (ENSSLUG00000000373)	FRMPD4 (ENSSLUG00000000384)	ARHGAP6 (ENSSLUG00000000415)
Percomorphaceae_D	ANCESTRAL SPECIES	12	ENSGT00390000016421.b.a	ENSGT00940000161679.a	ENSGT00940000154497.B	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000164480.a.a	ENSGT00940000159150	ENSGT00940000156563.b	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000163715.a	ENSGT01030000234540.A.b	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00510000047168	ENSGT00940000165039	ENSGT00940000164277	ENSGT00940000158619.o	ENSGT00930000150973.A	ENSGT01100000263663	ENSGT00940000160879	ENSGT00940000159771
Anabantaria	ANCESTRAL SPECIES	14	ENSGT00390000016421.b.a	ENSGT00940000161679.a	ENSGT00940000154497.B	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000164480.a.a	ENSGT00940000159150	ENSGT00940000156563.b	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000163715.a	ENSGT00980000198755	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00940000164277	ENSGT00940000158619.o	ENSGT00930000150973.A	ENSGT01100000263663	ENSGT00940000160879	ENSGT00940000159771	ENSGT00950000183035.a.b.a	ENSGT00940000153904.a.g
Zig-zag eel	MODERN SPECIES	13	ENSMAMG00000014281	casq2 (ENSMAMG00000014300)	vangl1 (ENSMAMG00000014206)	nhlh2 (ENSMAMG00000014190)	ENSMAMG00000026040	ENSMAMG00000027350	ENSMAMG00000014140	ENSMAMG00000026128	ENSMAMG00000014081	ENSMAMG00000014050	ENSMAMG00000014042	ENSMAMG00000013976	ENSMAMG00000013933	ENSMAMG00000013886	ANOS1 (ENSMAMG00000013836)	tbl1x (ENSMAMG00000013752) #22	GPR143 (ENSMAMG00000013719)	mospd2 (ENSMAMG00000013673)	ENSMAMG00000013652	glra2 (ENSMAMG00000013616)	gpm6bb (ENSMAMG00000013581)	ofd1 (ENSMAMG00000013570)	trappc2 (ENSMAMG00000024397)	RAB9A (ENSMAMG00000013538)	egfl6 (ENSMAMG00000013448)	ENSMAMG00000013433	TLR8 (ENSMAMG00000013389)	TLR7 (ENSMAMG00000013382)	FRMPD4 (ENSMAMG00000013252)	ARHGAP6 (ENSMAMG00000013208)	MID1 (ENSMAMG00000013142)
Anabantoidei	ANCESTRAL SPECIES	13	ENSGT00940000166160	ENSGT00390000016421.b.a	ENSGT00940000161679.a	ENSGT00940000154497.B	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000164480.a.a	ENSGT00940000156563.b	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000163715.a	ENSGT00980000198755	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00940000164277	ENSGT00940000158619.o	ENSGT00930000150973.A	ENSGT01100000266425	ENSGT00940000163875.a.b.a	ENSGT00940000159771	ENSGT00950000183035.a.b.a	ENSGT00940000153904.a.g
Siamese fighting fish	MODERN SPECIES	11	ENSBSLG00000017309	DOP1B (ENSBSLG00000017345)	SLC5A3 (ENSBSLG00000017455)	KCNE2 (ENSBSLG00000017464)	vangl1 (ENSBSLG00000017678)	nhlh2 (ENSBSLG00000017680)	ENSBSLG00000017687	ENSBSLG00000017704	rpe (ENSBSLG00000017711)	igsf3 (ENSBSLG00000017739)	ENSBSLG00000017764	klhl6 (ENSBSLG00000017831)	ENSBSLG00000017853	ENSBSLG00000017932	ANOS1 (ENSBSLG00000017955)	tbl1x (ENSBSLG00000018203) #22	GPR143 (ENSBSLG00000018360)	mospd2 (ENSBSLG00000018393)	ENSBSLG00000018761	glra2 (ENSBSLG00000018835)	gpm6bb (ENSBSLG00000018983)	ofd1 (ENSBSLG00000019008)	trappc2 (ENSBSLG00000019096)	RAB9A (ENSBSLG00000019400)	egfl6 (ENSBSLG00000019431)	ENSBSLG00000019773	ENSBSLG00000019799	ENSBSLG00000019806	TLR7 (ENSBSLG00000019814)	FRMPD4 (ENSBSLG00000019847)	ARHGAP6 (ENSBSLG00000020079)
Climbing perch	MODERN SPECIES	12	DOP1B (ENSATEG00000012362)	ENSATEG00000012522	ENSATEG00000012531	casq2 (ENSATEG00000012550)	vangl1 (ENSATEG00000012612)	nhlh2 (ENSATEG00000012652)	ENSATEG00000012662	ENSATEG00000012769	ENSATEG00000012773	ENSATEG00000012810	ENSATEG00000012821	ENSATEG00000012883	ENSATEG00000012920	ENSATEG00000012934	ANOS1 (ENSATEG00000012963)	tbl1x (ENSATEG00000013047) #22	GPR143 (ENSATEG00000013114)	ENSATEG00000013144	mospd2 (ENSATEG00000013197)	FANCB (ENSATEG00000013219)	glra2 (ENSATEG00000013259)	gpm6bb (ENSATEG00000028474)	ofd1 (ENSATEG00000013323)	ENSATEG00000013380	RAB9A (ENSATEG00000029440)	egfl6 (ENSATEG00000013415)	ENSATEG00000013449	ENSATEG00000013464	ENSATEG00000027985	ENSATEG00000013474	FRMPD4 (ENSATEG00000013488)
Carangaria	ANCESTRAL SPECIES	12	ENSGT00940000166160	ENSGT00390000016421.b.a	ENSGT00940000161679.a	ENSGT00940000154497.B	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000164480.b	ENSGT00940000156563.b	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000163715.a	ENSGT01030000234540.A.b	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00510000047168	ENSGT00940000165039	ENSGT00940000164277	ENSGT00940000158619.o	ENSGT00930000150973.A	ENSGT01100000263663	ENSGT01100000263975	ENSGT00940000160879
Carangaria_A	ANCESTRAL SPECIES	11	ENSGT00940000166160	ENSGT00390000016421.b.a	ENSGT00940000161679.a	ENSGT00940000154497.B	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000164480.b	ENSGT00940000156563.b	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000163715.a	ENSGT01030000234540.A.b	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00510000047168	ENSGT00940000165039	ENSGT00940000164277	ENSGT00940000158619.o	ENSGT00930000150973.A	ENSGT01100000263663	ENSGT01100000263975	ENSGT00940000160879
Seriola	ANCESTRAL SPECIES	6	ENSGT00940000166160	ENSGT00390000016421.b.a	ENSGT00940000161679.a	ENSGT00940000154497.B	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000162602	ENSGT00940000159150	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000163715.a	ENSGT01030000234540.A.b	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00940000165039	ENSGT00940000164277	ENSGT00940000158619.o	ENSGT00930000150973.A	ENSGT01100000263663	ENSGT01100000263975	ENSGT00940000160879	ENSGT00940000159771
Greater amberjack	MODERN SPECIES	21	ENSSDUG00000004276	DOP1B (ENSSDUG00000004238)	SLC5A3 (ENSSDUG00000004227)	KCNE2 (ENSSDUG00000004217)	casq2 (ENSSDUG00000004187)	vangl1 (ENSSDUG00000004075)	NHLH2 (ENSSDUG00000004061)	nqo1 (ENSSDUG00000004023)	ackr3a (ENSSDUG00000004014)	rpe (ENSSDUG00000003988)	igsf3 (ENSSDUG00000003975)	igsf3l (ENSSDUG00000003950)	klhl6 (ENSSDUG00000003926)	ENSSDUG00000003866	ANOS1 (ENSSDUG00000003815)	tbl1x (ENSSDUG00000003760) #22	GPR143 (ENSSDUG00000003740)	asb5b (ENSSDUG00000003624)	mospd2 (ENSSDUG00000003571)	FANCB (ENSSDUG00000003511)	glra2 (ENSSDUG00000003466)	gpm6bb (ENSSDUG00000003439)	ofd1 (ENSSDUG00000003408)	RAB9A (ENSSDUG00000003386)	trappc2 (ENSSDUG00000003374)	egfl6 (ENSSDUG00000003289)	ENSSDUG00000003276	TLR8 (ENSSDUG00000003256)	TLR7 (ENSSDUG00000003235)	FRMPD4 (ENSSDUG00000003192)	ARHGAP6 (ENSSDUG00000003092)
Yellowtail amberjack	MODERN SPECIES	2951	ENSSLDG00000020365	DOP1B (ENSSLDG00000020392)	SLC5A3 (ENSSLDG00000020531)	KCNE2 (ENSSLDG00000020538)	casq2 (ENSSLDG00000020552)	vangl1 (ENSSLDG00000020575)	NHLH2 (ENSSLDG00000020588)	nqo1 (ENSSLDG00000020598)	ackr3a (ENSSLDG00000020631)	rpe (ENSSLDG00000020636)	igsf3 (ENSSLDG00000020652)	igsf3l (ENSSLDG00000020668)	klhl6 (ENSSLDG00000020682)	ENSSLDG00000020715	ANOS1 (ENSSLDG00000020767)	tbl1x (ENSSLDG00000000110) #22	GPR143 (ENSSLDG00000000218)	ENSSLDG00000000267	mospd2 (ENSSLDG00000000356)	FANCB (ENSSLDG00000000594)	glra2 (ENSSLDG00000000666)	gpm6bb (ENSSLDG00000000701)	ofd1 (ENSSLDG00000000716)	ENSSLDG00000000727	trappc2 (ENSSLDG00000000754)	RAB9A (ENSSLDG00000000773)	egfl6 (ENSSLDG00000000798)	ENSSLDG00000000906	TLR7 (ENSSLDG00000000923)	FRMPD4 (ENSSLDG00000000996)	ARHGAP6 (ENSSLDG00000001083)
Barramundi perch	MODERN SPECIES	215	morc3a (ENSLCAG00010005656)	DOP1B (ENSLCAG00010005667)	SLC5A3 (ENSLCAG00010005688)	KCNE2 (ENSLCAG00010005691)	casq2 (ENSLCAG00010005727)	vangl1 (ENSLCAG00010005947)	ENSLCAG00010005952	ENSLCAG00010005955	ackr3a (ENSLCAG00010005960)	rpe (ENSLCAG00010005964)	igsf3 (ENSLCAG00010005973)	igsf3l (ENSLCAG00010005983)	klhl6 (ENSLCAG00010005985)	ENSLCAG00010005989	ANOS1 (ENSLCAG00010006006)	tbl1x (ENSLCAG00010006041) #22	GPR143 (ENSLCAG00010006058)	ENSLCAG00010006064	mospd2 (ENSLCAG00010006076)	ENSLCAG00010006085	glra2 (ENSLCAG00010006111)	gpm6bb (ENSLCAG00010006200)	ofd1 (ENSLCAG00010006290)	TRAPPC2B (ENSLCAG00010006303)	RAB9A (ENSLCAG00010006309)	egfl6 (ENSLCAG00010006314)	ENSLCAG00010006323	TLR8 (ENSLCAG00010006327)	TLR7 (ENSLCAG00010006335)	FRMPD4 (ENSLCAG00010006365)	ARHGAP6 (ENSLCAG00010006423)
Pleuronectoidei	ANCESTRAL SPECIES	9	ENSGT00940000166160	ENSGT00390000016421.b.a	ENSGT00940000161679.a	ENSGT00940000154497.B	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000164480.b	ENSGT00940000156563.b	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000163715.a	ENSGT01030000234540.A.b	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00940000165039	ENSGT00940000164277	ENSGT00940000158619.o	ENSGT00930000150973.A	ENSGT00980000198599	ENSGT00940000160879	ENSGT00940000159771	ENSGT00950000183035.a.b.a
Turbot	MODERN SPECIES	5	ENSSMAG00000025292	ENSSMAG00000033370	casq2 (ENSSMAG00000017981)	vangl1 (ENSSMAG00000017970)	nhlh2 (ENSSMAG00000037300)	ENSSMAG00000017954	ENSSMAG00000017947	ENSSMAG00000017942	ENSSMAG00000017925	ENSSMAG00000017902	ENSSMAG00000017867	ENSSMAG00000017851	ENSSMAG00000032039	ENSSMAG00000035212	ANOS1 (ENSSMAG00000017769)	tbl1x (ENSSMAG00000017740) #22	GPR143 (ENSSMAG00000017701)	ENSSMAG00000017665	mospd2 (ENSSMAG00000017586)	FANCB (ENSSMAG00000017543)	glra2 (ENSSMAG00000017487)	gpm6bb (ENSSMAG00000017471)	ofd1 (ENSSMAG00000017433)	ENSSMAG00000030800	trappc2 (ENSSMAG00000036595)	RAB9A (ENSSMAG00000017426)	egfl6 (ENSSMAG00000017394)	ENSSMAG00000017384	tlr8 (ENSSMAG00000017362)	FRMPD4 (ENSSMAG00000017320)	ARHGAP6 (ENSSMAG00000017263)
Tongue sole	MODERN SPECIES	7	cog3 (ENSCSEG00000009891)	EDNRB (ENSCSEG00000009847)	cnmd (ENSCSEG00000009827)	PCDH8 (ENSCSEG00000009819)	pcdh8 (ENSCSEG00000009814)	PCDH17 (ENSCSEG00000009805)	ENSCSEG00000009803	FASTKD5 (ENSCSEG00000009798)	gpc6b (ENSCSEG00000009727)	dct (ENSCSEG00000009712)	igsf3 (ENSCSEG00000009701)	igsf3l (ENSCSEG00000009680)	klhl6 (ENSCSEG00000009673)	ENSCSEG00000009662	ANOS1 (ENSCSEG00000009628)	tbl1x (ENSCSEG00000009573) #22	GPR143 (ENSCSEG00000009551)	ENSCSEG00000009542	mospd2 (ENSCSEG00000009512)	ENSCSEG00000009474	gdap2 (ENSCSEG00000009448)	wdr3 (ENSCSEG00000009381)	ENSCSEG00000009343	tbx15 (ENSCSEG00000009307)	wars2 (ENSCSEG00000009273)	hao2 (ENSCSEG00000009260)	ENSCSEG00000009246	hsd3b2 (ENSCSEG00000009237)	pla1a (ENSCSEG00000009206)	popdc2 (ENSCSEG00000009196)	cox17 (ENSCSEG00000009184)
Cod	DUPLICATION
Cod	MODERN SPECIES	12	ENSGMOG00000010998	ENSGMOG00000011067	ENSGMOG00000020229	casq2 (ENSGMOG00000011071)	ENSGMOG00000028003	vangl1 (ENSGMOG00000007036)	ENSGMOG00000031399	ENSGMOG00000029492	ENSGMOG00000036777	ENSGMOG00000028480	ENSGMOG00000003851	ENSGMOG00000011368	ENSGMOG00000011382	ENSGMOG00000037130	ENSGMOG00000023302 #22	tbl1x (ENSGMOG00000011402) #22	ENSGMOG00000011413	ENSGMOG00000011422	mospd2 (ENSGMOG00000011428)	ENSGMOG00000032684	glra2 (ENSGMOG00000011465)	gpm6bb (ENSGMOG00000011474)	ofd1 (ENSGMOG00000011479)	trappc2 (ENSGMOG00000011495)	RAB9A (ENSGMOG00000020144)	egfl6 (ENSGMOG00000011513)	ENSGMOG00000030748	ENSGMOG00000031937	ENSGMOG00000036041	ENSGMOG00000030100	TLR7 (ENSGMOG00000037181)
Cod	MODERN SPECIES	12	ENSGMOG00000030100	ENSGMOG00000036041	ENSGMOG00000031937	ENSGMOG00000030748	egfl6 (ENSGMOG00000011513)	RAB9A (ENSGMOG00000020144)	trappc2 (ENSGMOG00000011495)	ofd1 (ENSGMOG00000011479)	gpm6bb (ENSGMOG00000011474)	glra2 (ENSGMOG00000011465)	ENSGMOG00000032684	mospd2 (ENSGMOG00000011428)	ENSGMOG00000011422	ENSGMOG00000011413	tbl1x (ENSGMOG00000011402) #22	ENSGMOG00000023302 #22	ENSGMOG00000037130	ENSGMOG00000011382	ENSGMOG00000011368	ENSGMOG00000003851	ENSGMOG00000028480	ENSGMOG00000036777	ENSGMOG00000029492	ENSGMOG00000031399	vangl1 (ENSGMOG00000007036)	ENSGMOG00000028003	casq2 (ENSGMOG00000011071)	ENSGMOG00000020229	ENSGMOG00000011067	ENSGMOG00000010998	ENSGMOG00000032270
Protacanthopterygii	ANCESTRAL SPECIES	109	ENSGT00510000046499.r.b	ENSGT00940000154497.B	ENSGT00390000019377.b.f	ENSGT00390000012496.a.d	ENSGT00940000164480.a.a	ENSGT00940000156563.b	ENSGT01090000260051.b.b.dc.b	ENSGT00390000001447.ec	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000163715.a	ENSGT01030000235037	ENSGT00990000204171	ENSGT01030000234540.A.b	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00940000155107.b.b	ENSGT01090000260082.d.a.b.q.b
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	146	ENSGT00390000015060.kb.a.a	ENSGT00940000161679.a.f	ENSGT00940000154497.B	ENSGT00390000019377.b.f.g	ENSGT00390000012496.a.d.a	ENSGT00940000164480.a.a.h.b	ENSGT00940000159150.`b.a	ENSGT00940000156563.b.ab	ENSGT01090000260051.b.b.dc.b.h	ENSGT00390000001447.ec.a.a	ENSGT00940000155177.b.e	ENSGT00940000155177.a.l	ENSGT00940000163715.a	ENSGT01030000235037.d	ENSGT00440000033720.a.a.a.b	ENSGT00940000153421.a.a.a.a.b.m #22	ENSGT00390000016722.f	ENSGT00940000165059.A.i.a.a	ENSGT00390000016713.g.a	ENSGT00390000009885	ENSGT00940000158730.l
Salmoninae_a	ANCESTRAL SPECIES		ENSGT00510000046499.r.b	ENSGT00390000015060.kb.a.a	ENSGT00940000161679.a.f	ENSGT00940000154497.B	ENSGT00390000019377.b.f.g	ENSGT00390000012496.a.d.a	ENSGT00940000164480.a.a.h.b	ENSGT00940000156563.b.ab	ENSGT01090000260051.b.b.dc.b.h	ENSGT00390000001447.ec.a.a	ENSGT00940000155177.b.e	ENSGT00940000155177.a.l	ENSGT00940000163715.a	ENSGT01030000235037.d	ENSGT00440000033720.a.a.a.b	ENSGT00940000153421.a.a.a.a.b.m #22	ENSGT00390000016722.f	ENSGT00940000165059.A.i.a.a	ENSGT00390000016713.g.a	ENSGT00390000009885	ENSGT00940000158730.l	ENSGT00940000159316.yb.a	ENSGT01090000260082.d.a.b.q.b.a	ENSGT00940000156916.hb.a	ENSGT00940000154633.id.a.c	ENSGT00530000063927.a.b.j	ENSGT00940000160555	ENSGT00940000157300.p	ENSGT00940000154334.j	ENSGT00940000157498.m.a	ENSGT00940000158856.n
Salmo	ANCESTRAL SPECIES	10	ENSGT00990000214232	ENSGT00390000015060.kb.a.a	ENSGT00940000161679.a.f	ENSGT00940000154497.B	ENSGT00390000019377.b.f.g	ENSGT00390000012496.a.d.a	ENSGT00940000164480.a.a.h.b	ENSGT00940000159150.`b.a	ENSGT01090000260051.b.b.dc.b.h	ENSGT00390000001447.ec.a.a	ENSGT00940000155177.b.e	ENSGT00940000155177.a.l	ENSGT00940000163715.a	ENSGT01030000235037.d	ENSGT00440000033720.a.a.a.b	ENSGT00940000153421.a.a.a.a.b.m #22	ENSGT00390000016722.f	ENSGT00940000165059.A.i.a.a	ENSGT00390000016713.g.a	ENSGT00390000009885	ENSGT00940000158730.l	ENSGT00940000159316.yb.a	ENSGT01090000260082.d.a.b.q.b.a	ENSGT00940000156916.hb.a	ENSGT00940000154633.id.a.c	ENSGT00530000063927.a.b.j	ENSGT00940000160555	ENSGT00940000157300.p	ENSGT00940000154334.j	ENSGT00940000157498.m.a	ENSGT00940000158856.n
River trout	MODERN SPECIES	12	ENSSTUG00000008355	atp5po (ENSSTUG00000008290)	SLC5A3 (ENSSTUG00000008284)	KCNE2 (ENSSTUG00000008281)	casq2 (ENSSTUG00000008199)	vangl1 (ENSSTUG00000008184)	nhlh2 (ENSSTUG00000008174)	NQO1 (ENSSTUG00000007984)	ackr3a (ENSSTUG00000007974)	ENSSTUG00000007960	igsf3 (ENSSTUG00000007941)	ENSSTUG00000007927	klhl6 (ENSSTUG00000007918)	ENSSTUG00000007876	ANOS1 (ENSSTUG00000007800)	tbl1x (ENSSTUG00000007698) #22	GPR143 (ENSSTUG00000007687)	ENSSTUG00000007673	mospd2 (ENSSTUG00000007058)	ENSSTUG00000007030	glra2 (ENSSTUG00000007015)	ENSSTUG00000007008	RDX (ENSSTUG00000005681)	ENSSTUG00000005622	ARHGAP20 (ENSSTUG00000005532)	ENSSTUG00000005504	ENSSTUG00000004349	ENSSTUG00000004258	ENSSTUG00000004171	man1a2 (ENSSTUG00000003361)	tent5c (ENSSTUG00000003302)
Atlantic salmon	MODERN SPECIES	13	ENSSSAG00000043759	atp5po (ENSSSAG00000043976)	SLC5A3 (ENSSSAG00000098423)	KCNE2 (ENSSSAG00000088761)	casq2 (ENSSSAG00000103020)	vangl1 (ENSSSAG00000044373)	nhlh2 (ENSSSAG00000044432)	ENSSSAG00000054834	ackr3a (ENSSSAG00000088471)	rpe (ENSSSAG00000044897)	ENSSSAG00000044924	ENSSSAG00000047817	klhl6 (ENSSSAG00000047892)	ENSSSAG00000047907	ANOS1 (ENSSSAG00000047935)	tbl1x (ENSSSAG00000048037) #22	GPR143 (ENSSSAG00000048302)	ENSSSAG00000048376	mospd2 (ENSSSAG00000048416)	ENSSSAG00000048852	glra2 (ENSSSAG00000048892)	ENSSSAG00000120415	RDX (ENSSSAG00000049774)	ENSSSAG00000051568	ENSSSAG00000107951	ARHGAP20 (ENSSSAG00000051572)	cenpj (ENSSSAG00000051581)	ENSSSAG00000051648	ENSSSAG00000067067	ENSSSAG00000053647	man1a2 (ENSSSAG00000053717)
Oncorhynchus	ANCESTRAL SPECIES	13	ENSGT00510000046499.r.b	ENSGT00390000015060.kb.a.a	ENSGT00940000161679.a.f	ENSGT00940000154497.B.i	ENSGT00390000019377.b.f.g	ENSGT00390000012496.a.d.a	ENSGT00940000164480.a.a.h.b	ENSGT00940000156563.b.ab	ENSGT01090000260051.b.b.dc.b.h	ENSGT00390000001447.ec.a.a	ENSGT00940000155177.b.e	ENSGT00940000155177.a.l	ENSGT00940000163715.a	ENSGT01030000235037.d	ENSGT00440000033720.a.a.a.b	ENSGT00940000153421.a.a.a.a.b.m #22	ENSGT00390000016722.f	ENSGT00940000165059.A.i.a.a	ENSGT00390000016713.g.a	ENSGT00390000009885	ENSGT00940000158730.l	ENSGT00940000159316.yb.a	ENSGT01090000260082.d.a.b.q.b.a	ENSGT00940000156916.hb.a	ENSGT00940000154633.id.a.c	ENSGT00530000063927.a.b.j	ENSGT00940000160555	ENSGT00940000157300.p	ENSGT00940000154334.j	ENSGT00940000157498.m.a	ENSGT00940000158856.n
Oncorhynchus_a	ANCESTRAL SPECIES	11	ENSGT00510000046499.r.b	ENSGT00390000015060.kb.a.a	ENSGT00940000161679.a.f	ENSGT00940000154497.B.i	ENSGT00390000019377.b.f.g	ENSGT00390000012496.a.d.a	ENSGT00940000164480.a.a.h.b	ENSGT00940000156563.b.ab	ENSGT01090000260051.b.b.dc.b.h	ENSGT00390000001447.ec.a.a	ENSGT00940000155177.b.e	ENSGT00940000155177.a.l	ENSGT00940000163715.a	ENSGT01030000235037.d	ENSGT00440000033720.a.a.a.b	ENSGT00940000153421.a.a.a.a.b.m #22	ENSGT00390000016722.f	ENSGT00940000165059.A.i.a.a	ENSGT00390000016713.g.a	ENSGT00390000009885	ENSGT00940000158730.l	ENSGT00940000159316.yb.a	ENSGT01090000260082.d.a.b.q.b.a	ENSGT00940000156916.hb.a	ENSGT00940000154633.id.a.c	ENSGT00530000063927.a.b.j	ENSGT00940000160555	ENSGT00940000157300.p	ENSGT00940000154334.j	ENSGT00940000157498.m.a	ENSGT00940000158856.n
Coho salmon	MODERN SPECIES	18	DOP1B (ENSOKIG00005013707)	CBR1 (ENSOKIG00005013774)	SLC5A3 (ENSOKIG00005013802)	KCNE2 (ENSOKIG00005013805)	casq2 (ENSOKIG00005013820)	vangl1 (ENSOKIG00005013938)	nhlh2 (ENSOKIG00005013944)	ENSOKIG00005013949	ackr3a (ENSOKIG00005013979)	rpe (ENSOKIG00005013983)	igsf3 (ENSOKIG00005014013)	ENSOKIG00005014027	klhl6 (ENSOKIG00005014065)	ENSOKIG00005014107	ANOS1 (ENSOKIG00005014133)	tbl1x (ENSOKIG00005014218) #22	GPR143 (ENSOKIG00005014324)	ENSOKIG00005014334	mospd2 (ENSOKIG00005014378)	ENSOKIG00005015526	glra2 (ENSOKIG00005015537)	ENSOKIG00005015546	RDX (ENSOKIG00005015565)	ENSOKIG00005015626	ARHGAP20 (ENSOKIG00005015638)	ENSOKIG00005015678	ENSOKIG00005015737	ENSOKIG00005016491	ENSOKIG00005016497	man1a2 (ENSOKIG00005016571)	gdap2 (ENSOKIG00005018184)
Chinook salmon	MODERN SPECIES	18	ENSOTSG00005013613	DOP1B (ENSOTSG00005013614)	atp5po (ENSOTSG00005003000)	SLC5A3 (ENSOTSG00005003006)	KCNE2 (ENSOTSG00005003008)	casq2 (ENSOTSG00005003019)	vangl1 (ENSOTSG00005004770)	nhlh2 (ENSOTSG00005004773)	ENSOTSG00005004774	ackr3a (ENSOTSG00005004775)	rpe (ENSOTSG00005004777)	igsf3 (ENSOTSG00005004780)	klhl6 (ENSOTSG00005004782)	ENSOTSG00005004797	ANOS1 (ENSOTSG00005004801)	tbl1x (ENSOTSG00005004863) #22	GPR143 (ENSOTSG00005005592)	ENSOTSG00005005595	mospd2 (ENSOTSG00005005600)	ENSOTSG00005005606	glra2 (ENSOTSG00005005607)	ENSOTSG00005005608	ENSOTSG00005005616	ENSOTSG00005005843	ENSOTSG00005005844	ENSOTSG00005005847	ENSOTSG00005005856	ENSOTSG00005005857	man1a2 (ENSOTSG00005005858)	csrp2 (ENSOTSG00005006294)	gdap2 (ENSOTSG00005006313)
Rainbow trout	MODERN SPECIES	14	atp5po (ENSOMYG00000018540)	SLC5A3 (ENSOMYG00000018592)	KCNE2 (ENSOMYG00000018596)	casq2 (ENSOMYG00000018660)	ENSOMYG00000036126	vangl1 (ENSOMYG00000018862)	nhlh2 (ENSOMYG00000018870)	ENSOMYG00000018898	ackr3a (ENSOMYG00000019032)	rpe (ENSOMYG00000019037)	ENSOMYG00000019048	ENSOMYG00000076143	ENSOMYG00000019091	ENSOMYG00000019134	ANOS1 (ENSOMYG00000019180)	tbl1x (ENSOMYG00000019289) #22	GPR143 (ENSOMYG00000019343)	ENSOMYG00000019349	mospd2 (ENSOMYG00000019450)	ENSOMYG00000019842	glra2 (ENSOMYG00000019847)	ENSOMYG00000019849	RDX (ENSOMYG00000020000)	ENSOMYG00000075165	ENSOMYG00000021576	ARHGAP20 (ENSOMYG00000021587)	ENSOMYG00000021605	ENSOMYG00000021735	ENSOMYG00000055419	ENSOMYG00000021868	man1a2 (ENSOMYG00000021903)
Huchen	MODERN SPECIES	640								ackr3a (ENSHHUG00000039939)	rpe (ENSHHUG00000039935)	igsf3 (ENSHHUG00000039931)	ENSHHUG00000039928	ENSHHUG00000039919	klhl6 (ENSHHUG00000039895)	ENSHHUG00000039879	ANOS1 (ENSHHUG00000039857)	tbl1x (ENSHHUG00000039825) #22	GPR143 (ENSHHUG00000039811)	ENSHHUG00000039804	mospd2 (ENSHHUG00000039745)	FANCB (ENSHHUG00000039719)	glra2 (ENSHHUG00000039696)
Salmoninae	ANCESTRAL SPECIES	16														ENSGT01030000234540.A.b	ENSGT00440000033720.a.a.a.a	ENSGT00940000153421.a.a.a.a.b.n #22	ENSGT00390000016722.e	ENSGT00940000165059.A.i.a.b	ENSGT00390000016713.g.b	ENSGT00940000158730.k	ENSGT00940000155107.b.b	ENSGT01090000260082.d.a.b.q.b.b	ENSGT00940000156916.hb.b	ENSGT00940000154633.id.a.d	ENSGT00940000157559	ENSGT00530000063927.a.b.i	ENSGT00940000165376	ENSGT00940000157300.o	ENSGT00940000154334.i	ENSGT00940000157498.m.b	ENSGT00940000158856.m
Huchen	MODERN SPECIES	3163																tbl1x (ENSHHUG00000006595) #22	GPR143 (ENSHHUG00000006589)	ENSHHUG00000006585	mospd2 (ENSHHUG00000006541)	ENSHHUG00000006527	glra2 (ENSHHUG00000006518)	ENSHHUG00000006513	ENSHHUG00000006383	ENSHHUG00000006376	ENSHHUG00000006372
Salmoninae_a	ANCESTRAL SPECIES		ENSGT00940000161679.a.e	ENSGT00980000202612	ENSGT00390000019377.b.f.h	ENSGT00390000012496.a.d.b	ENSGT00940000164480.a.a.h.a	ENSGT01030000234567.B.a.a.b.a.a.d	ENSGT00940000156563.b.`b.a	ENSGT01090000260051.b.b.dc.b.g	ENSGT00390000001447.ec.a.b	ENSGT00940000155177.b.f.a.a	ENSGT00940000155177.a.k	ENSGT01030000235037.c	ENSGT00990000204171	ENSGT01030000234540.A.b	ENSGT00440000033720.a.a.a.a	ENSGT00940000153421.a.a.a.a.b.n #22	ENSGT00390000016722.e	ENSGT00940000165059.A.i.a.b	ENSGT00390000016713.g.b	ENSGT00940000158730.k	ENSGT00940000155107.b.b	ENSGT01090000260082.d.a.b.q.b.b	ENSGT00940000156916.hb.b	ENSGT00940000154633.id.a.d	ENSGT00940000157559	ENSGT00530000063927.a.b.i	ENSGT00940000165376	ENSGT00940000157300.o	ENSGT00940000154334.i	ENSGT00940000157498.m.b	ENSGT00940000158856.m
Salmo	ANCESTRAL SPECIES	15	ENSGT00940000161679.a.e	ENSGT00980000202612	ENSGT00390000019377.b.f.h	ENSGT00390000012496.a.d.b	ENSGT00940000164480.a.a.h.a	ENSGT01030000234567.B.a.a.b.a.a.d	ENSGT00940000156563.b.`b.a	ENSGT01090000260051.b.b.dc.b.g	ENSGT00390000001447.ec.a.b	ENSGT00390000001447.ec.b	ENSGT00940000155177.b.f.b	ENSGT00940000155177.a.k	ENSGT01030000235037.c	ENSGT00990000204171	ENSGT00440000033720.a.a.a.a	ENSGT00940000153421.a.a.a.a.b.n #22	ENSGT00390000016722.e	ENSGT00940000165059.A.i.a.b	ENSGT00390000016713.g.b	ENSGT00940000158730.k	ENSGT00940000155107.b.b	ENSGT01090000260082.d.a.b.q.b.b	ENSGT00940000156916.hb.b	ENSGT00940000154633.id.a.d	ENSGT00940000157559	ENSGT00530000063927.a.b.i	ENSGT00940000165376	ENSGT00940000157300.o	ENSGT00940000154334.i	ENSGT00940000157498.m.b	ENSGT00940000158856.m
Atlantic salmon	MODERN SPECIES	17	ATPO (ENSSSAG00000059523)	ENSSSAG00000094002	ENSSSAG00000059503	casq2 (ENSSSAG00000054929)	vangl1 (ENSSSAG00000054869)	nhlh2 (ENSSSAG00000109106)	ENSSSAG00000054838	ENSSSAG00000044445	ENSSSAG00000054829	rpe (ENSSSAG00000054825)	ENSSSAG00000054813	ENSSSAG00000054804	ENSSSAG00000054799	ENSSSAG00000054780	ANOS1 (ENSSSAG00000054698)	tbl1x (ENSSSAG00000053978) #22	GPR143 (ENSSSAG00000053806)	mospd2 (ENSSSAG00000068014)	glra2 (ENSSSAG00000067987)	ENSSSAG00000082658	ENSSSAG00000067969	RDX (ENSSSAG00000088971)	ENSSSAG00000067165	ENSSSAG00000096071	ARHGAP20 (ENSSSAG00000067151)	ENSSSAG00000067121	ENSSSAG00000067106	ENSSSAG00000067077	ENSSSAG00000111854	ENSSSAG00000053638	ENSSSAG00000067061
River trout	MODERN SPECIES	16	casq2 (ENSSTUG00000007253)	vangl1 (ENSSTUG00000007230)	nhlh2 (ENSSTUG00000007225)	zp3e (ENSSTUG00000007221)	ENSSTUG00000007158	ENSSTUG00000007146	ENSSTUG00000006999	ackr3a (ENSSTUG00000006992)	rpe (ENSSTUG00000006974)	igsf3 (ENSSTUG00000006933)	ENSSTUG00000006923	ENSSTUG00000006882	ENSSTUG00000006877	ENSSTUG00000006847	ANOS1 (ENSSTUG00000006773)	tbl1x (ENSSTUG00000006744) #22	GPR143 (ENSSTUG00000006702)	ENSSTUG00000006689	mospd2 (ENSSTUG00000006546)	glra2 (ENSSTUG00000006530)	ENSSTUG00000006521	ENSSTUG00000005333	ENSSTUG00000005175	ENSSTUG00000005000	ENSSTUG00000004874	ENSSTUG00000003815	ENSSTUG00000002975	ENSSTUG00000043046	man1a2 (ENSSTUG00000042404)	tent5c (ENSSTUG00000042388)	gdap2 (ENSSTUG00000042012)
Oncorhynchus	ANCESTRAL SPECIES	3	ENSGT00390000016421.b.a.e	ENSGT00940000168097.a.a	ENSGT00390000015060.kb.a.b	ENSGT00940000161679.a.e	ENSGT00390000019377.b.f.h	ENSGT00390000012496.a.d.b	ENSGT00940000164480.a.a.h.a	ENSGT01030000234567.B.a.a.b.a.a.d	ENSGT01090000260051.b.b.dc.b.g	ENSGT00390000001447.ec.a.b	ENSGT00940000155177.b.f.a.a	ENSGT00940000155177.a.k	ENSGT01030000235037.c	ENSGT01030000234540.A.b	ENSGT00440000033720.a.a.a.a	ENSGT00940000153421.a.a.a.a.b.n #22	ENSGT00390000016722.e	ENSGT00940000165059.A.i.a.b	ENSGT00390000016713.g.b.a	ENSGT00940000158730.k	ENSGT00940000155107.b.b	ENSGT01090000260082.d.a.b.q.b.b	ENSGT00940000156916.hb.b	ENSGT00940000166318.a	ENSGT00940000154633.id.a.d	ENSGT00940000157559	ENSGT00530000063927.a.b.i	ENSGT00940000165376	ENSGT00940000157300.o	ENSGT00940000154334.i	ENSGT00940000157498.m.b
Oncorhynchus_a	ANCESTRAL SPECIES	8	ENSGT00940000168097.a.a	ENSGT00390000015060.kb.a.b	ENSGT00940000161679.a.e	ENSGT00940000154497.B.j	ENSGT00390000019377.b.f.h	ENSGT00390000012496.a.d.b	ENSGT00940000164480.a.a.h.a	ENSGT01030000234567.B.a.a.b.a.a.d	ENSGT01090000260051.b.b.dc.b.g	ENSGT00390000001447.ec.a.b	ENSGT00940000155177.b.f.a.a	ENSGT00940000155177.a.k	ENSGT01030000235037.c	ENSGT01030000234540.A.b	ENSGT00440000033720.a.a.a.a	ENSGT00940000153421.a.a.a.a.b.n #22	ENSGT00390000016722.e	ENSGT00940000165059.A.i.a.b	ENSGT00390000016713.g.b.a	ENSGT00940000158730.k	ENSGT00940000155107.b.b	ENSGT01090000260082.d.a.b.q.b.b	ENSGT00940000156916.hb.b	ENSGT00940000166318.a	ENSGT00940000154633.id.a.d	ENSGT00940000157559	ENSGT00530000063927.a.b.i	ENSGT00940000164746	ENSGT00940000165376	ENSGT00940000157300.o	ENSGT00940000154334.i
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	53	NSG1 (ENSOTSG00005047572)	stx18 (ENSOTSG00005047571)	msx1a (ENSOTSG00005047570)	CYTL1 (ENSOTSG00005047569)	EVC2 (ENSOTSG00005047567)	EVC (ENSOTSG00005047564)	ENSOTSG00005047561	ENSOTSG00005047540	ENSOTSG00005047538	ENSOTSG00005047535	igsf3 (ENSOTSG00005047533)	ENSOTSG00005047531	ENSOTSG00005047529	ENSOTSG00005047528	ANOS1 (ENSOTSG00005047511)	tbl1x (ENSOTSG00005047510) #22	GPR143 (ENSOTSG00005047508)	ENSOTSG00005047507	mospd2 (ENSOTSG00005047506)	glra2 (ENSOTSG00005047505)	ENSOTSG00005047504	ENSOTSG00005047503	ENSOTSG00005047476	ENSOTSG00005047474
Chinook salmon	MODERN SPECIES	53	CACNA2D2 (ENSOTSG00005037028)	ACY1 (ENSOTSG00005037259)	ENSOTSG00005037862	HYAL2 (ENSOTSG00005037864)	tusc2b (ENSOTSG00005037865)	rassf1 (ENSOTSG00005037866)	cyb561d2 (ENSOTSG00005037867)	RAD54L2 (ENSOTSG00005037880)	bap1 (ENSOTSG00005039159)	BSN (ENSOTSG00005040550)	igsf3 (ENSOTSG00005040552)	ENSOTSG00005040570	ENSOTSG00005040572	ENSOTSG00005040576	ANOS1 (ENSOTSG00005040584)	tbl1x (ENSOTSG00005040763) #22	GPR143 (ENSOTSG00005040765)	ENSOTSG00005040770	mospd2 (ENSOTSG00005040772)	glra2 (ENSOTSG00005041078)	ENSOTSG00005041084	ENSOTSG00005041104	ENSOTSG00005042025	ENSOTSG00005042026
Coho salmon	MODERN SPECIES	11	atp5po (ENSOKIG00005002927)	SLC5A3 (ENSOKIG00005002922)	KCNE2 (ENSOKIG00005002916)	casq2 (ENSOKIG00005002871)	vangl1 (ENSOKIG00005002850)	nhlh2 (ENSOKIG00005002843)	ENSOKIG00005002834	ackr3a (ENSOKIG00005002827)	rpe (ENSOKIG00005002820)	IGSF3 (ENSOKIG00005002805)	ENSOKIG00005002781	ENSOKIG00005002758	ENSOKIG00005002750	ENSOKIG00005002745	ANOS1 (ENSOKIG00005002713)	tbl1x (ENSOKIG00005002621) #22	GPR143 (ENSOKIG00005002594)	ENSOKIG00005002582	mospd2 (ENSOKIG00005002553)	glra2 (ENSOKIG00005002538)	ENSOKIG00005002511	ENSOKIG00005001921	ENSOKIG00005001786	ENSOKIG00005001770	ENSOKIG00005001737	ENSOKIG00005001696	ENSOKIG00005001678	TRIM45 (ENSOKIG00005001674)	man1a2 (ENSOKIG00005001595)	tent5c (ENSOKIG00005001564)	gdap2 (ENSOKIG00005001547)
Rainbow trout	MODERN SPECIES	21	vangl1 (ENSOMYG00000014112)	ENSOMYG00000067696	nhlh2 (ENSOMYG00000014105)	ENSOMYG00000014098	ENSOMYG00000014093	ENSOMYG00000014083	ENSOMYG00000060193	ENSOMYG00000014060	ENSOMYG00000068621	ENSOMYG00000014034	ENSOMYG00000014018	ENSOMYG00000050527	ENSOMYG00000054735	ANOS1 (ENSOMYG00000013940)	ENSOMYG00000014176	tbl1x (ENSOMYG00000013904) #22	GPR143 (ENSOMYG00000013882)	ENSOMYG00000068210	mospd2 (ENSOMYG00000013840)	ENSOMYG00000076903	glra2 (ENSOMYG00000013826)	ENSOMYG00000013815	ENSOMYG00000013804	ENSOMYG00000013791	ENSOMYG00000061223	ENSOMYG00000056507	ENSOMYG00000013764	ENSOMYG00000012578	ENSOMYG00000054565	ENSOMYG00000012458	ENSOMYG00000012445
Northern pike	MODERN SPECIES	15	ENSELUG00000032602	zp3a.2 (ENSELUG00000005122)	ENSELUG00000026962	NQO1 (ENSELUG00000005112)	NQO1 (ENSELUG00000005135)	ENSELUG00000030777	NQO1 (ENSELUG00000034029)	ackr3a (ENSELUG00000005199)	rpe (ENSELUG00000005213)	igsf3 (ENSELUG00000005232)	ENSELUG00000030995	klhl6 (ENSELUG00000005307)	ENSELUG00000026607	ENSELUG00000005327	ANOS1 (ENSELUG00000005359)	tbl1x (ENSELUG00000005376) #22	GPR143 (ENSELUG00000005396)	ENSELUG00000005404	mospd2 (ENSELUG00000005424)	ENSELUG00000005442	glra2 (ENSELUG00000005459)	ENSELUG00000005470	RDX (ENSELUG00000005488)	ENSELUG00000005501	ARHGAP20 (ENSELUG00000005571)	ENSELUG00000005626	ENSELUG00000005653	ENSELUG00000000162	ENSELUG00000005711	ENSELUG00000005723	ENSELUG00000005728
Otomorpha	ANCESTRAL SPECIES	11	ENSGT00950000183078.a	ENSGT00940000153518.d.b.a.a	ENSGT00940000154389.a	ENSGT00940000153259.a.b.a.a	ENSGT00940000160405	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000164022	ENSGT00940000177459	ENSGT00940000161140	ENSGT00940000159942.a.d	ENSGT00940000159832.n #23	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000157160	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00510000047168	ENSGT00940000164277	ENSGT00930000150973.A	ENSGT00980000198599	ENSGT01060000249008.b	ENSGT00940000163875.a.b.a	ENSGT00940000159771	ENSGT00950000183035.a.b.a
Otophysi	ANCESTRAL SPECIES	125	ENSGT00950000183030	ENSGT00940000158977	ENSGT00940000154295	ENSGT00510000049213	ENSGT00940000160405	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000164022	ENSGT00940000177459	ENSGT00940000161140	ENSGT00940000159942.a.d	ENSGT00940000159832.n #23	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00510000047168	ENSGT00940000164277	ENSGT00930000150973.A	ENSGT01060000249008.b	ENSGT00940000163875.a.b.a	ENSGT00940000159771	ENSGT00950000183035.a.b.a	ENSGT00940000153904.a.g	ENSGT00940000155821.c.a
Characiphysae	ANCESTRAL SPECIES	119	ENSGT00940000158977	ENSGT00940000154295	ENSGT00510000049213	ENSGT00940000168612	ENSGT00940000153259.a.b.b	ENSGT00940000160405	ENSGT00940000155238.z	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000164022	ENSGT00940000177459	ENSGT00940000161140	ENSGT00940000159942.a.d	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00940000164277	ENSGT00930000150973.A	ENSGT00980000198599	ENSGT00940000163875.a.b.a	ENSGT00940000159771	ENSGT00950000183035.a.b.a	ENSGT00940000153904.a.g	ENSGT00940000155821.c.a	ENSGT00390000015682
Characiphysae_b	ANCESTRAL SPECIES	123	ENSGT00940000154295	ENSGT00510000049213	ENSGT00390000000217	ENSGT00940000153259.a.b.b	ENSGT00940000160405	ENSGT00940000155238.z	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000164022	ENSGT00940000177459	ENSGT00940000161140	ENSGT00940000159942.a.d	ENSGT00940000159832.n #23	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT01030000234592.B	ENSGT00390000016722	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00940000171137	ENSGT00930000150973.A	ENSGT00980000198599	ENSGT00940000163875.a.b.a	ENSGT00940000159771	ENSGT00950000183035.a.b.a	ENSGT00940000153904.a.g	ENSGT00940000155821.c.a	ENSGT00390000015682
Characoidei	ANCESTRAL SPECIES	127	ENSGT00940000158977	ENSGT00940000154295	ENSGT00510000049213	ENSGT00390000000217	ENSGT00940000153259.a.b.b	ENSGT00940000160405	ENSGT00940000155238.z	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000177459	ENSGT00940000161140	ENSGT00940000159942.a.d	ENSGT00940000159832.n #23	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT01030000234592.B	ENSGT00390000016722	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00940000171137	ENSGT00930000150973.A	ENSGT00980000198599	ENSGT00940000163875.a.b.a	ENSGT00940000159771	ENSGT00950000183035.a.b.a	ENSGT00940000153904.a.g	ENSGT00940000155821.c.a	ENSGT00390000015682
Red-bellied piranha	MODERN SPECIES	525															ANOS1 (ENSPNAG00000010066)	tbl1x (ENSPNAG00000010140) #22	si:ch211-165i18.2 (ENSPNAG00000010161)	GPR143 (ENSPNAG00000010190)	mospd2 (ENSPNAG00000010228)	FANCB (ENSPNAG00000001381)	glra2 (ENSPNAG00000010280)
Mexicana tetra	MODERN SPECIES	107				SH3RF3 (ENSAMXG00000012721)	septin10 (ENSAMXG00000012691)	SOWAHC (ENSAMXG00000012680)	akap17a (ENSAMXG00000037156)	asmt (ENSAMXG00000041096)	ENSAMXG00000029416	ENSAMXG00000034046	ARSD (ENSAMXG00000001406)	MXRA5 (ENSAMXG00000001430)	ENSAMXG00000001444 #23	nlgn4xb (ENSAMXG00000035411)	ANOS1 (ENSAMXG00000001475)	tbl1x (ENSAMXG00000001491) #22	ENSAMXG00000032978 ##22	GPR143 (ENSAMXG00000001513)	mospd2 (ENSAMXG00000001536)	ENSAMXG00000001556	glra2 (ENSAMXG00000001583)	gpm6bb (ENSAMXG00000001627)	ENSAMXG00000001654	ENSAMXG00000042868	rab9a (ENSAMXG00000026059)	egfl6 (ENSAMXG00000001700)	tmsb4x (ENSAMXG00000041720)	ENSAMXG00000032611	TLR7 (ENSAMXG00000026060)	FRMPD4 (ENSAMXG00000001751)	ARHGAP6 (ENSAMXG00000001772)
Electric eel	MODERN SPECIES	22														ENSEEEG00000018283	ANOS1 (ENSEEEG00000018284)	tbl1x (ENSEEEG00000018342) #22	si:ch211-165i18.2 (ENSEEEG00000018420)	GPR143 (ENSEEEG00000018421)	gtpbp8 (ENSEEEG00000018422)	nepro (ENSEEEG00000018450)	poglut2 (ENSEEEG00000018460)	stxbp5l (ENSEEEG00000018514)	gtf2e1 (ENSEEEG00000018634)	lcmt2 (ENSEEEG00000018635)	ENSEEEG00000018637	tbccd1 (ENSEEEG00000018638)	rab5b (ENSEEEG00000018641)	dbr1 (ENSEEEG00000018643)	armc8 (ENSEEEG00000018647)	ENSEEEG00000018708	idh1 (ENSEEEG00000018742)
Cyprinoidei	ANCESTRAL SPECIES	113	ENSGT00950000183097.a.a.b ##18	ENSGT00390000006356	ENSGT00950000183030	ENSGT00940000158977	ENSGT00940000154295	ENSGT00510000049213	ENSGT00940000160405	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000177459	ENSGT00940000161140	ENSGT00940000159942.a.d	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00510000047168	ENSGT00930000150973.A	ENSGT01060000249008.b	ENSGT00940000163875.a.b.a	ENSGT00940000159771	ENSGT00950000183035.a.b.a	ENSGT00940000153904.a.g	ENSGT00940000155821.c.a	ENSGT00390000015682
Cyprininae	ANCESTRAL SPECIES	300						ENSGT00940000160405.j	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000177459	ENSGT00940000161140	ENSGT00940000159942.a.d.b	ENSGT00940000156607.a.a.jb.b	ENSGT00440000033720.a.a.a.d	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730.g	ENSGT00390000006915.c.c.b.e	ENSGT00390000006915.c.c.b.f	ENSGT00390000001798	ENSGT00510000047168	ENSGT00940000158619.p.c.a.a	ENSGT01030000234583.a.a.c.b.a.a.a.b.b.a.a.a.a.a.a.a.a.b.a.b.a	ENSGT00930000150973.A.e	ENSGT01060000249008.b	ENSGT00940000163875.a.b.a.d	ENSGT00940000159771.n	ENSGT00950000183035.a.b.a.e
Goldfish	MODERN SPECIES	49	ENSCARG00000000887	ENSCARG00000000888	rpl31 (ENSCARG00000000898)	cnot11 (ENSCARG00000000909)	lcp1 (ENSCARG00000001057) ##18	rab3gap1 (ENSCARG00000001496)	UBXN4 (ENSCARG00000001525)	ENSCARG00000001528	ENSCARG00000001531	ENSCARG00000001538	actr3 (ENSCARG00000001585)	ENSCARG00000001710	ENSCARG00000001779	ENSCARG00000001796	ANOS1 (ENSCARG00000001835)	tbl1x (ENSCARG00000001903) #22	GPR143 (ENSCARG00000001924)	ENSCARG00000001991	mospd2 (ENSCARG00000002044)	FANCB (ENSCARG00000002218)	glra2 (ENSCARG00000002241)	gpm6bb (ENSCARG00000002382)	ofd1 (ENSCARG00000002472)	TRAPPC2B (ENSCARG00000002489)	rab9a (ENSCARG00000002498)	ENSCARG00000002504	egfl6 (ENSCARG00000002520)	tmsb4x (ENSCARG00000002548)	ENSCARG00000002556	TLR7 (ENSCARG00000002563)	FRMPD4 (ENSCARG00000002581)
Cyprininae_a	ANCESTRAL SPECIES	250													ENSGT00940000159942.a.d.b	ENSGT00940000156607.a.a.jb.b	ENSGT00440000033720.a.a.a.d	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730.g	ENSGT00390000006915.c.c.b.f	ENSGT00390000001798	ENSGT00510000047168	ENSGT00940000158619.p.c.a.a	ENSGT01030000234583.a.a.c.b.a.a.a.b.b.a.a.a.a.a.a.a.a.b.a.b.a	ENSGT00930000150973.A.e	ENSGT01060000249008.b	ENSGT00940000163875.a.b.a.d	ENSGT00940000159771.n	ENSGT00950000183035.a.b.a.e	ENSGT00940000153904.a.g.b
Common carp reference	MODERN SPECIES	46	ENSCCRG00000066859	ENSCCRG00000059548	ENSCCRG00000057669	ENSCCRG00000061765	ENSCCRG00000074421	akap17a (ENSCCRG00000007669)	asmt (ENSCCRG00000068494)	ENSCCRG00000033396	ENSCCRG00000060805	nlgn4xb (ENSCCRG00000062589)	ENSCCRG00000024886	ENSCCRG00000021699	ENSCCRG00000059059	ENSCCRG00000062257	ANOS1 (ENSCCRG00000017877)	tbl1x (ENSCCRG00000035577) #22	GPR143 (ENSCCRG00000035556)	mospd2 (ENSCCRG00000015016)	FANCB (ENSCCRG00000015020)	glra2 (ENSCCRG00000070742)	gpm6bb (ENSCCRG00000074315)	ofd1 (ENSCCRG00000015595)	TRAPPC2 (ENSCCRG00000004238)	rab9a (ENSCCRG00000058519)	ENSCCRG00000061610	EGFL6 (ENSCCRG00000059796)	ENSCCRG00000035373	ENSCCRG00000055193	ARHGAP6 (ENSCCRG00000012042)	ENSCCRG00000004236	cog3 (ENSCCRG00000017078)
Golden-line barbel	MODERN SPECIES	1468															ANOS1 (ENSSGRG00000045884)	tbl1x (ENSSGRG00000045430) #22	GPR143 (ENSSGRG00000045381)
Zebrafish	MODERN SPECIES	24	lcp1 (ENSDARG00000023188) ##18	cnot11 (ENSDARG00000068596)	rpl31 (ENSDARG00000053365)	TBC1D8 (ENSDARG00000104493)	edar (ENSDARG00000099088)	SH3RF3 (ENSDARG00000102334)	septin10 (ENSDARG00000099236)	ENSDARG00000112547	SOWAHC (ENSDARG00000098790)	akap17a (ENSDARG00000104768)	asmt (ENSDARG00000098249)	ARSD (ENSDARG00000002299)	MXRA5 (ENSDARG00000076309)	nlgn4xb (ENSDARG00000077761)	ANOS1 (ENSDARG00000112637)	tbl1x (ENSDARG00000060438) #22	GPR143 (ENSDARG00000034572)	mospd2 (ENSDARG00000026024)	ENSDARG00000067596	glra2 (ENSDARG00000075012)	gpm6bb (ENSDARG00000001676)	ofd1 (ENSDARG00000000529)	trappc2 (ENSDARG00000097660)	rab9a (ENSDARG00000045027)	egfl6 (ENSDARG00000045958)	drd1b (ENSDARG00000038918)	RAD50 (ENSDARG00000038917)	il13 (ENSDARG00000077809)	pou4f3 (ENSDARG00000006206)	ENSDARG00000116059	RBM27 (ENSDARG00000060521)
Clupeiformes	ANCESTRAL SPECIES	1	ENSGT00940000153518.d.b.a.a	ENSGT00940000154389.a	ENSGT00940000153259.a.b.a.a	ENSGT00940000160405	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000162345.d	ENSGT00940000164022	ENSGT00940000177459	ENSGT00940000161140	ENSGT00940000159942.a.d	ENSGT00940000159832.n #23	ENSGT00440000033720.a.a.a	ENSGT00940000153421.a.a.a.a.b #22	ENSGT00390000016722	ENSGT00940000165059.A	ENSGT00940000157160	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730	ENSGT00390000006915.c.c.b	ENSGT00390000001798	ENSGT00510000047168	ENSGT00940000158619.p.a	ENSGT00930000150973.A	ENSGT01060000249008.b	ENSGT00940000163875.a.b.a	ENSGT00940000160879	ENSGT00940000159771
Atlantic herring	MODERN SPECIES	11	ENSCHAG00000006658	ENSCHAG00000006282	RANBP2 (ENSCHAG00000002709)	edar (ENSCHAG00000002239)	SH3RF3 (ENSCHAG00000002162)	SOWAHC (ENSCHAG00000002144)	akap17a (ENSCHAG00000002123)	asmt (ENSCHAG00000002087)	ENSCHAG00000002058	ENSCHAG00000001958	ARSD (ENSCHAG00000001622)	MXRA5 (ENSCHAG00000001516)	PRKX (ENSCHAG00000001478) #23	nlgn4xb (ENSCHAG00000001155)	ANOS1 (ENSCHAG00000000828)	tbl1x (ENSCHAG00000000193) #22	GPR143 (ENSCHAG00000027447)	ENSCHAG00000027443	mospd2 (ENSCHAG00000027380)	FANCB (ENSCHAG00000027367)	glra2 (ENSCHAG00000027344)	gpm6bb (ENSCHAG00000027320)	ofd1 (ENSCHAG00000027299)	TRAPPC2B (ENSCHAG00000027293)	RAB9A (ENSCHAG00000027292)	egfl6 (ENSCHAG00000027284)	ENSCHAG00000027277	ENSCHAG00000027274	ENSCHAG00000027272	TLR7 (ENSCHAG00000027268)	FRMPD4 (ENSCHAG00000027237)
Denticle herring	MODERN SPECIES	19	ENSDCDG00000025505	ENSDCDG00000025491	edar (ENSDCDG00000025477)	ENSDCDG00000025470	SH3RF3 (ENSDCDG00000025468)	SEPTIN10 (ENSDCDG00000024606)	SOWAHC (ENSDCDG00000024588)	akap17a (ENSDCDG00000024583)	asmt (ENSDCDG00000024579)	DHRSX (ENSDCDG00000024577)	ARSD (ENSDCDG00000024128)	MXRA5 (ENSDCDG00000024101)	ENSDCDG00000024095	nlgn4xb (ENSDCDG00000024067)	ANOS1 (ENSDCDG00000024055)	tbl1x (ENSDCDG00000024014) #22	GPR143 (ENSDCDG00000024007)	ASB9 (ENSDCDG00000024006)	mospd2 (ENSDCDG00000023421)	FANCB (ENSDCDG00000023396)	glra2 (ENSDCDG00000023280)	gpm6bb (ENSDCDG00000023267)	ofd1 (ENSDCDG00000023258)	TRAPPC2B (ENSDCDG00000023248)	RAB9A (ENSDCDG00000023243)	egfl6 (ENSDCDG00000023224)	ENSDCDG00000023208	TLR8 (ENSDCDG00000023204)	TLR7 (ENSDCDG00000023200)	FRMPD4 (ENSDCDG00000023195)	ARHGAP6 (ENSDCDG00000023190)
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	110	ENSGT00940000153518.d.b.b	ENSGT00940000154389.a.b	ENSGT00940000168612	ENSGT00940000153259.a.b.a.b	ENSGT00940000160405.k	ENSGT00950000183003.a.a.b.c.a.b	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000177459	ENSGT00940000161140	ENSGT00940000159942.a.b	ENSGT00940000156607.a.a.u	ENSGT00940000165158.b	ENSGT00940000161153	ENSGT00440000033720.a.d	ENSGT00940000153421.a.a.a.a.b.o #22	ENSGT00390000016722.a	ENSGT00940000158730.f	ENSGT00390000013608	ENSGT00390000006915.c.c.b.a.a	ENSGT00390000001798	ENSGT01010000222530	ENSGT00940000158619.o	ENSGT00940000162067	ENSGT00930000150973.A.a	ENSGT01060000249008	ENSGT00950000183035.a.b.a.k	ENSGT00950000182965.b.pb	ENSGT00940000153904.a.f	ENSGT00940000155821.c.a	ENSGT00390000015682
Asian bonytongue	MODERN SPECIES	3	RANBP2 (ENSSFOG00015023201)	ENSSFOG00015023213	edar (ENSSFOG00015023225)	SH3RF3 (ENSSFOG00015025984)	septin10 (ENSSFOG00015023237)	SOWAHC (ENSSFOG00015023247)	akap17a (ENSSFOG00015023258)	asmt (ENSSFOG00015023279)	ENSSFOG00015023296	ARSD (ENSSFOG00015026120)	MXRA5 (ENSSFOG00015023312)	nlgn4xb (ENSSFOG00015023319)	STS (ENSSFOG00015023345)	ENSSFOG00015023331	ANOS1 (ENSSFOG00015023355)	tbl1x (ENSSFOG00015023373) #22	GPR143 (ENSSFOG00015023389)	MOSPD2 (ENSSFOG00015023400)	glra2 (ENSSFOG00015023412)	gemin8 (ENSSFOG00015029447)	gpm6bb (ENSSFOG00015023431)	ENSSFOG00015023443	ENSSFOG00015030954	ENSSFOG00015032536	RAB9A (ENSSFOG00015003259)	ENSSFOG00015000059	egfl6 (ENSSFOG00015000061)	ENSSFOG00015003197	ENSSFOG00015000098	PRPS2 (ENSSFOG00015004770)	FRMPD4 (ENSSFOG00015004799)
P. kingsleyae	MODERN SPECIES	160	GCC2 (ENSPKIG00000021194)	ENSPKIG00000021113	RANBP2 (ENSPKIG00000021054)	ENSPKIG00000020946	edar (ENSPKIG00000020896)	SH3RF3 (ENSPKIG00000020847)	SOWAHC (ENSPKIG00000020830)	akap17a (ENSPKIG00000020821)	asmt (ENSPKIG00000020797)	ARSD (ENSPKIG00000020773)	MXRA5 (ENSPKIG00000020743)	nlgn4xb (ENSPKIG00000020711)	pnpla4 (ENSPKIG00000020668)	STS (ENSPKIG00000020639)	ANOS1 (ENSPKIG00000020565)	ENSPKIG00000020491 #22	GPR143 (ENSPKIG00000020459)	MOSPD2 (ENSPKIG00000020393)	glra2 (ENSPKIG00000020352)	gemin8 (ENSPKIG00000020338)	gpm6bb (ENSPKIG00000020298)	ofd1 (ENSPKIG00000020235)	RAB9A (ENSPKIG00000020212)	TRAPPC2B (ENSPKIG00000020200)	egfl6 (ENSPKIG00000020170)	ENSPKIG00000020152	PRPS1L1 (ENSPKIG00000020139)	FRMPD4 (ENSPKIG00000020106)	MSL3 (ENSPKIG00000020065)	ENSPKIG00000020049	ARHGAP6 (ENSPKIG00000020008)
Osteoglossiformes	ANCESTRAL SPECIES	217		ENSGT00940000153518.d.b.a.b	ENSGT00940000154389.a.a	ENSGT00940000153259.a.b.a.a	ENSGT00940000160405.l	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.a.a	ENSGT00940000168183	ENSGT00940000163186	ENSGT00940000154344.b	ENSGT00940000159942.a.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a.t	ENSGT00390000014753	ENSGT00440000033720.a.c	ENSGT00940000153421.a.a.a.a.b.p #22	ENSGT00390000016722.b	ENSGT00390000016713	ENSGT00390000009885	ENSGT00940000158730.e	ENSGT00390000006915.c.c.b.b	ENSGT00930000150973.A.b	ENSGT00980000198599	ENSGT00940000160879	ENSGT00940000159771	ENSGT00950000182803.B.d.b	ENSGT00950000183035.a.b.a.l	ENSGT00950000182965.b.ob	ENSGT00940000153904.a.e	ENSGT00940000155821.d
Asian bonytongue	MODERN SPECIES	5	SH3RF3 (ENSSFOG00015029101)	sowahcb (ENSSFOG00015003788)	ENSSFOG00015032592	ENSSFOG00015030017	ENSSFOG00015003811	sowahcb (ENSSFOG00015026905)	ENSSFOG00015003767	ZBED1 (ENSSFOG00015027342)	cd99 (ENSSFOG00015026810)	MXRA5 (ENSSFOG00015003718)	PRKX (ENSSFOG00015003673) #23	ENSSFOG00015003638	ENSSFOG00015003606	pudp (ENSSFOG00015027952)	ANOS1 (ENSSFOG00015003541)	tbl1x (ENSSFOG00015003522) #22	GPR143 (ENSSFOG00015003493)	mospd2 (ENSSFOG00015003460)	FANCB (ENSSFOG00015003380)	glra2 (ENSSFOG00015032750)	GPM6B (ENSSFOG00015029182)	egfl6 (ENSSFOG00015003211)	tmsb4x (ENSSFOG00015032899)	TLR7 (ENSSFOG00015003184)	PRPS2 (ENSSFOG00015003150)	FRMPD4 (ENSSFOG00015003069)	MSL3 (ENSSFOG00015003008)	ARHGAP6 (ENSSFOG00015002713)	MID1 (ENSSFOG00015002735)	SLC25A30 (ENSSFOG00015028935)	ednrba (ENSSFOG00015002813)
P. kingsleyae	MODERN SPECIES	222															ANOS1 (ENSPKIG00000012047)	tbl1x (ENSPKIG00000011998) #22	GPR143 (ENSPKIG00000011965)	mospd2 (ENSPKIG00000011938)	FANCB (ENSPKIG00000011897)	glra2 (ENSPKIG00000011850)	gpm6bb (ENSPKIG00000011813)	egfl6 (ENSPKIG00000011769)	tmsb4x (ENSPKIG00000011757)	TLR8 (ENSPKIG00000011748)	TLR7 (ENSPKIG00000011740)	FRMPD4 (ENSPKIG00000011718)	MSL3 (ENSPKIG00000011664)	ENSPKIG00000011624	ENSPKIG00000011609	ARHGAP6 (ENSPKIG00000011586)	MID1 (ENSPKIG00000011541)
Spotted gar	MODERN SPECIES	652	akap17a (ENSLOCG00000010269)	asmt (ENSLOCG00000010259)	ENSLOCG00000010253	ZBED1 (ENSLOCG00000017415)	cd99 (ENSLOCG00000010250)	gyg2 (ENSLOCG00000010234)	ARSD (ENSLOCG00000010227)	ENSLOCG00000010220	MXRA5 (ENSLOCG00000010205)	PRKX (ENSLOCG00000010188) #23	nlgn4xb (ENSLOCG00000010176)	pudp (ENSLOCG00000010173)	ENSLOCG00000010156	STS (ENSLOCG00000010141)	anos1a (ENSLOCG00000010127)	tbl1x (ENSLOCG00000010116) #22	GPR143 (ENSLOCG00000010107)	ASB9 (ENSLOCG00000010097)	mospd2 (ENSLOCG00000010087)	FANCB (ENSLOCG00000010078)	glra2 (ENSLOCG00000010066)	gemin8 (ENSLOCG00000010057)	gpm6bb (ENSLOCG00000010049)	ofd1 (ENSLOCG00000010040)	TRAPPC2B (ENSLOCG00000010033)	rab9a (ENSLOCG00000017414)	TCEANC (ENSLOCG00000010028)	egfl6 (ENSLOCG00000010006)	tmsb (ENSLOCG00000010000)	TLR8 (ENSLOCG00000009990)	TLR8 (ENSLOCG00000009982)
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000153421.a.a.a.a.b #22
Lamprey	MODERN SPECIES	4583																tbl1x (ENSPMAG00000007696) #22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000153421.a.a.a.a.a ##22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000153421.a.a.a.a.a ##22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00940000153421.a.a.a.a.a ##22
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00940000153421.a.a.a.a.a ##22
Neopterygii	ANCESTRAL SPECIES																	ENSGT00940000153421.a.a.a.a.a ##22
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000153421.a.a.a.a.a ##22
Clupeocephala	ANCESTRAL SPECIES	223											ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00940000154552	ENSGT00390000015010	ENSGT00940000164654	ENSGT00940000156113	ENSGT00390000005651.n	ENSGT00730000112562	ENSGT00390000002200.a.b	ENSGT00440000038757	ENSGT00530000064273.b	ENSGT00940000156165	ENSGT00940000155854.b	ENSGT00940000164815.a	ENSGT01030000234558.C.o
Euteleosteomorpha	ANCESTRAL SPECIES	10	ENSGT00550000075080	ENSGT00940000155152.f.a	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000160465.k.b	ENSGT00940000159144.C	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00940000154552	ENSGT00390000015010	ENSGT00940000164654	ENSGT00940000156113	ENSGT00390000005651.n	ENSGT00730000112562	ENSGT00390000002200.a.b	ENSGT00440000038757	ENSGT00530000064273.b	ENSGT00940000156165	ENSGT00940000155854.b.a.a	ENSGT00940000164815.a	ENSGT01030000234558.C.o
Acanthomorphata	ANCESTRAL SPECIES		ENSGT00940000155152.f.a	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b	ENSGT00940000160465.k.b	ENSGT00940000159144.C	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00940000154552	ENSGT00390000015010	ENSGT00940000164654	ENSGT00940000156113	ENSGT00390000005651.n	ENSGT00730000112562	ENSGT00390000002200.a.b	ENSGT00440000038757	ENSGT00530000064273.b	ENSGT00940000164815.a	ENSGT01030000234558.C.o	ENSGT00390000014781	ENSGT00940000164993.g
Cod	MODERN SPECIES	21	ENSGMOG00000002264	ENSGMOG00000002232	ENSGMOG00000029746	ENSGMOG00000002211	ENSGMOG00000031449	ENSGMOG00000018587	ENSGMOG00000002130	ENSGMOG00000002109	ephb3a (ENSGMOG00000001474)	ENSGMOG00000032920	ENSGMOG00000003057	ENSGMOG00000022438	KCNMB3 (ENSGMOG00000003049)	PIK3CA (ENSGMOG00000003009)	kcnmb2 (ENSGMOG00000036367)	tbl1xr1b (ENSGMOG00000002973) ##22	b3gnt5b (ENSGMOG00000002958)	eif4a2 (ENSGMOG00000002930)	dcun1d1 (ENSGMOG00000002911)	ENSGMOG00000002869	ENSGMOG00000028749	ENSGMOG00000031122	ENSGMOG00000027401	ENSGMOG00000016317	ripk2 (ENSGMOG00000016290)	ENSGMOG00000026937	zgc:153115 (ENSGMOG00000017987)	ENSGMOG00000032046	ENSGMOG00000025303	ENSGMOG00000023577	ENSGMOG00000031903
Euacanthomorphacea	ANCESTRAL SPECIES	4	ENSGT00940000155152.f.a	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b	ENSGT00940000160465.k.b	ENSGT00940000159144.C	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00390000001437	ENSGT00940000154552	ENSGT00390000015010	ENSGT00940000164654	ENSGT00940000156113	ENSGT00390000005651.n	ENSGT00730000112562	ENSGT00390000002200.a.b	ENSGT00440000038757	ENSGT00530000064273.b	ENSGT00940000164815.a	ENSGT01030000234558.C.o	ENSGT00390000014781
Pinecone sodierfish	MODERN SPECIES	8	ZBTB41 (ENSMMDG00005013456)	ENSMMDG00005013460	ENSMMDG00005013461	ahsg2 (ENSMMDG00005013465)	ENSMMDG00005013468	pfn2a (ENSMMDG00005013474)	ENSMMDG00005013477	ENSMMDG00005013480	cpdp (ENSMMDG00005013488)	NMUR1 (ENSMMDG00005013518)	ephb3a (ENSMMDG00005013623)	ENSMMDG00005013627	KCNMB3 (ENSMMDG00005013631)	PIK3CA (ENSMMDG00005013636)	kcnmb2 (ENSMMDG00005013646)	tbl1xr1b (ENSMMDG00005013668) ##22	b3gnt5b (ENSMMDG00005013672)	eif4a2 (ENSMMDG00005013684)	ENSMMDG00005014789	dcun1d1 (ENSMMDG00005014799)	CCDC39 (ENSMMDG00005014882)	ENSMMDG00005014896	ripk2 (ENSMMDG00005014897)	ENSMMDG00005014899	asip2b (ENSMMDG00005014902)	ENSMMDG00005014914	zgc:153115 (ENSMMDG00005014927)	ENSMMDG00005014932	tsen15 (ENSMMDG00005015338)	ENSMMDG00005015340	sec22ba (ENSMMDG00005015344)
Percomorphaceae	ANCESTRAL SPECIES	6	ENSGT00940000155152.f.a	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b	ENSGT00940000160465.k.b	ENSGT00940000159144.C	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00390000001437	ENSGT00940000154552	ENSGT00390000015010	ENSGT00940000164654	ENSGT00940000156113	ENSGT00390000005651.n	ENSGT00730000112562	ENSGT00390000002200.a.b	ENSGT00440000038757	ENSGT00530000064273.b	ENSGT00940000164815.a	ENSGT01030000234558.C.o	ENSGT00390000014781
Tiger tail seahorse	MODERN SPECIES	269	ZBTB41 (ENSHCOG00000001875)	ENSHCOG00000001852	ENSHCOG00000001840	ahsg2 (ENSHCOG00000001811)	ENSHCOG00000001799	pfn2a (ENSHCOG00000001795)	ENSHCOG00000001791	ENSHCOG00000021011	cpdp (ENSHCOG00000021005)	NMUR1 (ENSHCOG00000020963)	ephb3a (ENSHCOG00000000565)	ENSHCOG00000020830	KCNMB3 (ENSHCOG00000020815)	PIK3CA (ENSHCOG00000020793)	kcnmb2 (ENSHCOG00000020749)	tbl1xr1b (ENSHCOG00000020735) ##22	b3gnt5b (ENSHCOG00000020706)	eif4a2 (ENSHCOG00000020703)	SETD9 (ENSHCOG00000000836)	dcun1d1 (ENSHCOG00000020674)	ENSHCOG00000020651	ENSHCOG00000020624	ENSHCOG00000020605	ENSHCOG00000020597	ripk2 (ENSHCOG00000020572)	imp3 (ENSHCOG00000020565)	sec22ba (ENSHCOG00000020539)	ENSHCOG00000020531	tsen15 (ENSHCOG00000020515)	zgc:153115 (ENSHCOG00000020512)	ENSHCOG00000020507
Percomorphaceae_B	ANCESTRAL SPECIES	8	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b	ENSGT00940000160465.k.b	ENSGT00940000153664.B.q.a	ENSGT00940000159144.C	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00390000001437	ENSGT00940000154552.h	ENSGT00390000015010	ENSGT00940000175258	ENSGT00940000164654	ENSGT00940000156113	ENSGT00390000005651.n	ENSGT00730000112562	ENSGT00390000002200.a.b	ENSGT00440000038757	ENSGT00530000064273.b	ENSGT00940000164815.a	ENSGT01030000234558.C.o
Ovalentaria	ANCESTRAL SPECIES	5	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b	ENSGT00940000160465.k.b	ENSGT00940000153664.B.q.a	ENSGT00940000159144.C	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00390000001437	ENSGT00940000154552.h	ENSGT00390000015010	ENSGT00940000175258	ENSGT00940000164654	ENSGT00940000156113	ENSGT00390000005651.n	ENSGT00730000112562	ENSGT00440000038757	ENSGT00530000064273.b	ENSGT00390000002200.a.b	ENSGT00940000164815.a	ENSGT01030000234558.C.o
Ovalentaria_B	ANCESTRAL SPECIES	6	ENSGT00550000075080	ENSGT00940000155152.f.a	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b	ENSGT00940000160465.k.b	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00390000001437	ENSGT00940000154552.h	ENSGT00390000015010	ENSGT00940000175258	ENSGT00940000164654	ENSGT00940000156113	ENSGT00390000005651.n	ENSGT00730000112562	ENSGT00390000002200.a.b	ENSGT00940000164815.a	ENSGT01030000234558.C.o	ENSGT00390000014781	ENSGT00940000164993.g
Cichlidae	ANCESTRAL SPECIES	2	ENSGT00550000075080	ENSGT00940000155152.f.a	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b	ENSGT00940000160465.k.b	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00390000001437	ENSGT00940000154552.h	ENSGT00390000015010	ENSGT00940000175258	ENSGT00940000164654	ENSGT00940000156113	ENSGT00390000005651.n	ENSGT00730000112562	ENSGT00390000002200.a.b	ENSGT00940000164815.a	ENSGT00390000014781	ENSGT00940000164993.g	ENSGT00940000156349.d
Pseudocrenilabrinae	ANCESTRAL SPECIES	7	ENSGT00550000075080	ENSGT00940000155152.f.a	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b	ENSGT00940000160465.k.b	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00390000001437	ENSGT00940000154552.h	ENSGT00390000015010	ENSGT00940000175258	ENSGT00940000164654	ENSGT00940000156113	ENSGT00390000005651.n	ENSGT00730000112562	ENSGT00390000002200.a.b	ENSGT00940000164815.a	ENSGT00390000014781	ENSGT00940000164993.g	ENSGT00940000156349.d.c
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	4	ENSGT00550000075080	ENSGT00940000155152.f.a	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b	ENSGT00940000160465.k.b	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00390000001437	ENSGT00940000154552.h	ENSGT00390000015010	ENSGT00940000175258	ENSGT00940000164654	ENSGT00940000156113	ENSGT00390000005651.n	ENSGT00730000112562.a	ENSGT00390000002200.a.b	ENSGT00940000164815.a	ENSGT00390000014781	ENSGT00940000164993.g	ENSGT00940000156349.d.c
Haplochromini	ANCESTRAL SPECIES	2	ENSGT00550000075080	ENSGT00940000155152.f.a	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b	ENSGT00940000160465.k.b	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00390000001437	ENSGT00940000154552.h	ENSGT00390000015010	ENSGT00940000175258	ENSGT00940000164654	ENSGT00940000156113	ENSGT00390000005651.n	ENSGT00730000112562.a	ENSGT00390000002200.a.b	ENSGT00940000164815.a	ENSGT00390000014781	ENSGT00940000164993.g	ENSGT00940000156349.d.c
Haplochromini_A	ANCESTRAL SPECIES	3	ENSGT00550000075080	ENSGT00940000155152.f.a	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b	ENSGT00940000160465.k.b	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00390000001437	ENSGT00940000154552.h	ENSGT00390000015010	ENSGT00940000175258	ENSGT00940000164654	ENSGT00940000156113	ENSGT00390000005651.n	ENSGT00730000112562.a	ENSGT00390000002200.a.b	ENSGT00940000164815.a	ENSGT00390000014781	ENSGT00940000164993.g	ENSGT00940000156349.d.c
P. nyererei	MODERN SPECIES	656	ENSPNYG00000002460	ZBTB41 (ENSPNYG00000002412)	ENSPNYG00000002387	ENSPNYG00000002360	ahsg2 (ENSPNYG00000002348)	pfn2a (ENSPNYG00000002338)	ENSPNYG00000002327	ENSPNYG00000002296	cpdp (ENSPNYG00000002250)	NMUR1 (ENSPNYG00000002163)	ephb3a (ENSPNYG00000002112)	ENSPNYG00000002078	KCNMB3 (ENSPNYG00000002055)	PIK3CA (ENSPNYG00000001961)	kcnmb2 (ENSPNYG00000001921)	tbl1xr1b (ENSPNYG00000001893) ##22	b3gnt5b (ENSPNYG00000001879)	eif4a2 (ENSPNYG00000001780)	SETD9 (ENSPNYG00000001770)	dcun1d1 (ENSPNYG00000001740)	ENSPNYG00000001687	ENSPNYG00000001655	ENSPNYG00000001639	ripk2 (ENSPNYG00000001557)	ENSPNYG00000001544	ENSPNYG00000001533
Haplochromini_B	ANCESTRAL SPECIES	12	ENSGT00550000075080	ENSGT00940000155152.f.a	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b	ENSGT00940000160465.k.b	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00390000001437	ENSGT00940000154552.h	ENSGT00390000015010	ENSGT00940000175258	ENSGT00940000164654	ENSGT00940000156113	ENSGT00390000005651.n	ENSGT00730000112562.a	ENSGT00390000002200.a.b	ENSGT01100000263527.b.a.d.i.a.a	ENSGT00440000038757	ENSGT00940000164815.a	ENSGT00390000014781
Eastern happy	MODERN SPECIES	9	ENSACLG00000011703	ENSACLG00000011421	ENSACLG00000011417	ahsg2 (ENSACLG00000011403)	ENSACLG00000011399	pfn2a (ENSACLG00000011394)	ENSACLG00000011384	ENSACLG00000011379	cpdp (ENSACLG00000011360)	NMUR1 (ENSACLG00000011064)	ephb3a (ENSACLG00000010978)	ENSACLG00000010888	KCNMB3 (ENSACLG00000010878)	PIK3CA (ENSACLG00000010742)	kcnmb2 (ENSACLG00000010724)	tbl1xr1b (ENSACLG00000010687) ##22	b3gnt5b (ENSACLG00000010681)	eif4a2 (ENSACLG00000010594)	SETD9 (ENSACLG00000010581)	dcun1d1 (ENSACLG00000010565)	ENSACLG00000010528	ENSACLG00000010512	ENSACLG00000010471	ripk2 (ENSACLG00000010435)	ENSACLG00000010106	asip2b (ENSACLG00000010102)	asip2b (ENSACLG00000010090)	ENSACLG00000010085	ENSACLG00000010082	ENSACLG00000010063	zgc:153115 (ENSACLG00000010058)
Zebra mbuna	MODERN SPECIES	1100	ENSMZEG00005007384	ENSMZEG00005007367	ENSMZEG00005007343	ahsg2 (ENSMZEG00005007281)	ENSMZEG00005007241	pfn2a (ENSMZEG00005007232)	ENSMZEG00005007218	ENSMZEG00005007182	cpdp (ENSMZEG00005007143)	NMUR1 (ENSMZEG00005007133)	ephb3a (ENSMZEG00005007075)	ENSMZEG00005007035	KCNMB3 (ENSMZEG00005007029)	PIK3CA (ENSMZEG00005006967)	kcnmb2 (ENSMZEG00005006946)	tbl1xr1b (ENSMZEG00005006877) ##22	b3gnt5b (ENSMZEG00005006846)	eif4a2 (ENSMZEG00005006771)	SETD9 (ENSMZEG00005006760)	dcun1d1 (ENSMZEG00005006737)	ENSMZEG00005006716	ENSMZEG00005006697	ENSMZEG00005006687	ripk2 (ENSMZEG00005006675)	ENSMZEG00005006636	asip2b (ENSMZEG00005006613)	ENSMZEG00005006578	ENSMZEG00005006571	zgc:153115 (ENSMZEG00005006560)	tsen15 (ENSMZEG00005006555)	ENSMZEG00005006548
Burton s mouthbrooder	MODERN SPECIES	529	grid2ipb (ENSHBUG00000017483)	zdhhc4 (ENSHBUG00000017505)	ENSHBUG00000017522	ENSHBUG00000017545	ENSHBUG00000017582	pfn2a (ENSHBUG00000017595)	ENSHBUG00000017604	ENSHBUG00000017614	cpdp (ENSHBUG00000017673)	NMUR1 (ENSHBUG00000017691)	ephb3a (ENSHBUG00000017767)	ENSHBUG00000017799	KCNMB3 (ENSHBUG00000001082)	PIK3CA (ENSHBUG00000017883)	kcnmb2 (ENSHBUG00000017919)	tbl1xr1b (ENSHBUG00000017962) ##22	b3gnt5b (ENSHBUG00000017967)	eif4a2 (ENSHBUG00000018048)	SETD9 (ENSHBUG00000018062)	dcun1d1 (ENSHBUG00000018087)	ENSHBUG00000018103	ENSHBUG00000018114	ENSHBUG00000018126	ripk2 (ENSHBUG00000018139)	ENSHBUG00000000535	asip2b (ENSHBUG00000018188)	ATP6V0D2 (ENSHBUG00000018221)	zgc:153115 (ENSHBUG00000018227)	tsen15 (ENSHBUG00000018239)	ENSHBUG00000018256	sec22ba (ENSHBUG00000000538)
Lyretail cichlid	MODERN SPECIES	300	ZBTB41 (ENSNBRG00000005175)	ENSNBRG00000005161	ENSNBRG00000005136	ENSNBRG00000005109	ENSNBRG00000005061	pfn2a (ENSNBRG00000005044)	ENSNBRG00000005039	ENSNBRG00000005032	cpdp (ENSNBRG00000004893)	NMUR1 (ENSNBRG00000004796)	ephb3a (ENSNBRG00000004750)	ENSNBRG00000004702	KCNMB3 (ENSNBRG00000004680)	PIK3CA (ENSNBRG00000004608)	kcnmb2 (ENSNBRG00000004588)	tbl1xr1b (ENSNBRG00000004565) ##22	b3gnt5b (ENSNBRG00000004546)	eif4a2 (ENSNBRG00000004471)	SETD9 (ENSNBRG00000004456)	dcun1d1 (ENSNBRG00000004437)	ENSNBRG00000004390	ENSNBRG00000004372	ENSNBRG00000004342	ENSNBRG00000004324	asip2b (ENSNBRG00000004302)	ENSNBRG00000004274	zgc:153115 (ENSNBRG00000004267)	tsen15 (ENSNBRG00000004252)	ENSNBRG00000004213	sec22ba (ENSNBRG00000004197)	sec22ba (ENSNBRG00000004081)
Nile tilapia	MODERN SPECIES	9	CRB1 (ENSONIG00000010727)	ENSONIG00000036072	ENSONIG00000041321	ahsg2 (ENSONIG00000030440)	ENSONIG00000023467	pfn2a (ENSONIG00000029978)	ENSONIG00000038560	ENSONIG00000010717	cpdp (ENSONIG00000010715)	NMUR1 (ENSONIG00000010713)	ephb3a (ENSONIG00000010705)	ENSONIG00000038936	KCNMB3 (ENSONIG00000010699)	PIK3CA (ENSONIG00000010693)	kcnmb2 (ENSONIG00000010692)	tbl1xr1b (ENSONIG00000010689) ##22	b3gnt5b (ENSONIG00000037963)	eif4a2 (ENSONIG00000010685)	SETD9 (ENSONIG00000033625)	dcun1d1 (ENSONIG00000010683)	ENSONIG00000010679	ENSONIG00000010677	ripk2 (ENSONIG00000010673)	ENSONIG00000010672	ENSONIG00000030577	agrp2 (ENSONIG00000035294)	ENSONIG00000041454	ENSONIG00000011790	tsen15 (ENSONIG00000038012)	ENSONIG00000028855	sec22ba (ENSONIG00000004730)
Midas cichlid	MODERN SPECIES	235	ZBTB41 (ENSACIG00000001767)	ENSACIG00000001749	ENSACIG00000001731	ahsg2 (ENSACIG00000001714)	pfn2a (ENSACIG00000001595)	ENSACIG00000001579	ENSACIG00000001559	cpdp (ENSACIG00000001528)	NMUR1 (ENSACIG00000001444)	ephb3a (ENSACIG00000001280)	ENSACIG00000001269	ENSACIG00000001226	KCNMB3 (ENSACIG00000001196)	PIK3CA (ENSACIG00000001123)	kcnmb2 (ENSACIG00000001092)	tbl1xr1b (ENSACIG00000001053) ##22	b3gnt5b (ENSACIG00000001033)	eif4a2 (ENSACIG00000000989)	SETD9 (ENSACIG00000000983)	dcun1d1 (ENSACIG00000000713)	ENSACIG00000000667	ENSACIG00000000644	ENSACIG00000000414	ripk2 (ENSACIG00000000328)	asip2b (ENSACIG00000000313)	ENSACIG00000000289	zgc:153115 (ENSACIG00000000265)	tsen15 (ENSACIG00000000223)	zgc:55943 (ENSACIG00000000202)	sec22ba (ENSACIG00000000151)	imp3 (ENSACIG00000022070)
Pomacentridae	ANCESTRAL SPECIES	6	ENSGT00550000075080	ENSGT00940000155152.f.a	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b	ENSGT00940000160465.k.b	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00390000001437	ENSGT00940000154552.h	ENSGT00390000015010	ENSGT00940000175258	ENSGT00940000164654	ENSGT00940000156113	ENSGT00390000005651.n	ENSGT00730000112562	ENSGT00390000002200.a.b	ENSGT00940000164815.a	ENSGT01030000234558.C.o	ENSGT00390000014781	ENSGT00940000164993.g
Pomacentridae_A	ANCESTRAL SPECIES	18	ENSGT00550000075080	ENSGT00940000155152.f.a	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b	ENSGT00940000160465.k.b	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00390000001437	ENSGT00940000154552.h	ENSGT00390000015010	ENSGT00940000175258	ENSGT00940000164654	ENSGT00940000156113	ENSGT00390000005651.n	ENSGT00730000112562	ENSGT00390000002200.a.b	ENSGT00940000164815.a	ENSGT01030000234558.C.o	ENSGT00390000014781	ENSGT00940000164993.g
Amphiprion	ANCESTRAL SPECIES	33	ENSGT00550000075080	ENSGT00940000155152.f.a	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b	ENSGT00940000160465.k.b	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00390000001437	ENSGT00940000154552.h	ENSGT00390000015010	ENSGT00940000175258	ENSGT00940000164654	ENSGT00940000156113	ENSGT00390000005651.n	ENSGT00730000112562	ENSGT00390000002200.a.b	ENSGT00940000164815.a	ENSGT01030000234558.C.o	ENSGT00390000014781	ENSGT00940000164993.g
Clown anemonefish	MODERN SPECIES	2053												ENSAOCG00000024261	KCNMB3 (ENSAOCG00000024276)	PIK3CA (ENSAOCG00000024294)	kcnmb2 (ENSAOCG00000024311)	tbl1xr1b (ENSAOCG00000024340) ##22	b3gnt5b (ENSAOCG00000024350)	eif4a2 (ENSAOCG00000024386)	SETD9 (ENSAOCG00000024393)	dcun1d1 (ENSAOCG00000024399)	ENSAOCG00000024409	ENSAOCG00000024418	ENSAOCG00000001777	ripk2 (ENSAOCG00000024428)	ENSAOCG00000024436	asip2b (ENSAOCG00000002956)	ENSAOCG00000002959
Orange clownfish	MODERN SPECIES	1	ENSAPEG00000003509	ZBTB41 (ENSAPEG00000003528)	ENSAPEG00000003585	ENSAPEG00000003610	ahsg2 (ENSAPEG00000003626)	pfn2a (ENSAPEG00000003691)	ENSAPEG00000003701	ENSAPEG00000003725	cpdp (ENSAPEG00000003739)	NMUR1 (ENSAPEG00000003790)	ephb3a (ENSAPEG00000003903)	ENSAPEG00000003962	KCNMB3 (ENSAPEG00000004006)	PIK3CA (ENSAPEG00000004051)	kcnmb2 (ENSAPEG00000004143)	tbl1xr1b (ENSAPEG00000004190) ##22	b3gnt5b (ENSAPEG00000004255)	eif4a2 (ENSAPEG00000004260)	SETD9 (ENSAPEG00000004305)	dcun1d1 (ENSAPEG00000004322)	CCDC39 (ENSAPEG00000004353)	ENSAPEG00000004474	ENSAPEG00000004504	ripk2 (ENSAPEG00000004699)	ENSAPEG00000004744	asip2b (ENSAPEG00000004753)	ENSAPEG00000004775	zgc:153115 (ENSAPEG00000004803)	ENSAPEG00000004844	tsen15 (ENSAPEG00000005107)	ENSAPEG00000005178
Spiny chromis	MODERN SPECIES	34	ENSAPOG00000015776	ZBTB41 (ENSAPOG00000015747)	ENSAPOG00000015684	ENSAPOG00000015646	ahsg2 (ENSAPOG00000015601)	pfn2a (ENSAPOG00000015589)	ENSAPOG00000015581	ENSAPOG00000015571	cpdp (ENSAPOG00000015518)	NMUR1 (ENSAPOG00000015459)	ephb3a (ENSAPOG00000015440)	ENSAPOG00000015358	KCNMB3 (ENSAPOG00000015303)	PIK3CA (ENSAPOG00000015275)	kcnmb2 (ENSAPOG00000000425)	tbl1xr1b (ENSAPOG00000015152) ##22	b3gnt5b (ENSAPOG00000015067)	eif4a2 (ENSAPOG00000015061)	SETD9 (ENSAPOG00000001037)	dcun1d1 (ENSAPOG00000014991)	ENSAPOG00000014959	ENSAPOG00000014946	ENSAPOG00000014942	ripk2 (ENSAPOG00000014892)	ENSAPOG00000014872	asip2b (ENSAPOG00000014866)	ENSAPOG00000014860	zgc:153115 (ENSAPOG00000014810)	COLGALT2 (ENSAPOG00000014802)	tsen15 (ENSAPOG00000014791)	ENSAPOG00000014780
Bicolor damselfish	MODERN SPECIES	236	ENSSPAG00000003013	ZBTB41 (ENSSPAG00000002990)	ENSSPAG00000002968	ENSSPAG00000002946	ahsg2 (ENSSPAG00000002919)	pfn2a (ENSSPAG00000002903)	ENSSPAG00000002895	ENSSPAG00000002856	cpdp (ENSSPAG00000002808)	NMUR1 (ENSSPAG00000002788)	ephb3a (ENSSPAG00000002692)	ENSSPAG00000002645	KCNMB3 (ENSSPAG00000002625)	PIK3CA (ENSSPAG00000002550)	kcnmb2 (ENSSPAG00000002520)	tbl1xr1b (ENSSPAG00000002454) ##22	b3gnt5b (ENSSPAG00000002444)	eif4a2 (ENSSPAG00000002382)	dcun1d1 (ENSSPAG00000002340)	ENSSPAG00000002309	ENSSPAG00000002289	ENSSPAG00000002274	ripk2 (ENSSPAG00000002253)	ENSSPAG00000002239	asip2b (ENSSPAG00000002234)	ATP6V0D2 (ENSSPAG00000002191)	zgc:153115 (ENSSPAG00000002180)	ENSSPAG00000002147	tsen15 (ENSSPAG00000002140)	ENSSPAG00000002112	sec22ba (ENSSPAG00000002070)
Atherinomorphae	ANCESTRAL SPECIES	4	ENSGT00550000075080	ENSGT00940000155152.f.a	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b	ENSGT00940000160465.k.b	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00390000001437	ENSGT00940000154552.h	ENSGT00390000015010	ENSGT00940000175258	ENSGT00940000164654	ENSGT00940000156113	ENSGT00390000005651.n	ENSGT00730000112562	ENSGT00390000002200.a.b	ENSGT00440000038757	ENSGT00530000064273.b	ENSGT00940000164815.a	ENSGT00390000014781
Cyprinodontiformes	ANCESTRAL SPECIES	5	ENSGT00550000075080	ENSGT00940000155152.f.a	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b	ENSGT00940000160465.k.b	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00390000001437	ENSGT00940000154552.h	ENSGT00390000015010	ENSGT00940000175258	ENSGT00940000164654	ENSGT00940000156113	ENSGT00390000005651.n	ENSGT00730000112562	ENSGT00390000002200.a.b	ENSGT00940000164815.a	ENSGT00390000014781	ENSGT00940000164993.g	ENSGT00940000156349.d
Cyprinodontoidei	ANCESTRAL SPECIES	2	ENSGT00550000075080	ENSGT00940000155152.f.a	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b	ENSGT00940000160465.k.b	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00390000001437	ENSGT00940000154552.h	ENSGT00390000015010	ENSGT00940000175258	ENSGT00940000164654	ENSGT00940000156113	ENSGT00390000005651.n	ENSGT00730000112562	ENSGT00940000164815.a	ENSGT00390000014781	ENSGT00940000164993.g	ENSGT00940000156349.d	ENSGT00550000075090
Poeciliinae	ANCESTRAL SPECIES	6	ENSGT00550000075080	ENSGT00940000155152.f.a	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b	ENSGT00940000160465.k.b	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00390000001437	ENSGT00940000154552.h	ENSGT00390000015010	ENSGT00940000175258	ENSGT00940000164654	ENSGT00940000156113	ENSGT00390000005651.n	ENSGT00730000112562	ENSGT00940000164815.a	ENSGT00390000014781	ENSGT00940000164993.g	ENSGT00940000156349.d	ENSGT00550000075090
Poecilia	ANCESTRAL SPECIES	19	ENSGT00550000075080	ENSGT00940000155152.f.a	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b	ENSGT00940000160465.k.b	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00390000001437	ENSGT00940000154552.h	ENSGT00390000015010	ENSGT00940000175258	ENSGT00940000164654	ENSGT00940000156113	ENSGT00390000005651.n	ENSGT00730000112562	ENSGT00940000164815.a	ENSGT00390000014781	ENSGT00940000164993.g	ENSGT00940000156349.d	ENSGT00550000075090
NAME_6	ANCESTRAL SPECIES	50	ENSGT00550000075080	ENSGT00940000155152.f.a	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b	ENSGT00940000160465.k.b	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00390000001437	ENSGT00940000154552.h	ENSGT00390000015010	ENSGT00940000175258	ENSGT00940000164654	ENSGT00940000156113	ENSGT00390000005651.n	ENSGT00730000112562
Sailfin molly	MODERN SPECIES	1772											ENSPLAG00000003656	ENSPLAG00000003672	KCNMB3 (ENSPLAG00000003682)	PIK3CA (ENSPLAG00000003708)	kcnmb2 (ENSPLAG00000003734)	tbl1xr1b (ENSPLAG00000003752) ##22
Amazon molly	MODERN SPECIES	318	ZBTB41 (ENSPFOG00000006537)	CRB1 (ENSPFOG00000006439)	ENSPFOG00000006382	ahsg2 (ENSPFOG00000006325)	ENSPFOG00000024176	pfn2a (ENSPFOG00000006273)	ENSPFOG00000006233	ENSPFOG00000022975	cpdp (ENSPFOG00000006158)	NMUR1 (ENSPFOG00000006127)	ephb3a (ENSPFOG00000005460)	ENSPFOG00000005279	KCNMB3 (ENSPFOG00000005197)	PIK3CA (ENSPFOG00000004895)	kcnmb2 (ENSPFOG00000004829)	tbl1xr1b (ENSPFOG00000004648) ##22	b3gnt5b (ENSPFOG00000004627)	eif4a2 (ENSPFOG00000004507)	SETD9 (ENSPFOG00000020072)	dcun1d1 (ENSPFOG00000004422)	ENSPFOG00000004021	ENSPFOG00000003781	ripk2 (ENSPFOG00000003638)	ENSPFOG00000024656	asip2b (ENSPFOG00000022501)	ENSPFOG00000003581	CNIH4 (ENSPFOG00000003577)	preb (ENSPFOG00000003574)	ADCY3 (ENSPFOG00000003233)	asic1a (ENSPFOG00000003152)	spryd4 (ENSPFOG00000003125)
Guppy	MODERN SPECIES	447	ZBTB41 (ENSPREG00000005852)	ENSPREG00000005895	ENSPREG00000005919	ahsg2 (ENSPREG00000005956)	ENSPREG00000005981	pfn2a (ENSPREG00000005987)	ENSPREG00000006018	ENSPREG00000006038	cpdp (ENSPREG00000006061)	NMUR1 (ENSPREG00000006104)	ephb3a (ENSPREG00000006194)	ENSPREG00000006246	KCNMB3 (ENSPREG00000006316)	PIK3CA (ENSPREG00000006335)	kcnmb2 (ENSPREG00000006392)	tbl1xr1b (ENSPREG00000006425) ##22	b3gnt5b (ENSPREG00000006459)	eif4a2 (ENSPREG00000006472)	SETD9 (ENSPREG00000006553)	dcun1d1 (ENSPREG00000006571)	ENSPREG00000006603	ENSPREG00000006664	ENSPREG00000006679	ripk2 (ENSPREG00000006709)	asip2b (ENSPREG00000006770)	zgc:153115 (ENSPREG00000006786)	tsen15 (ENSPREG00000006799)	zgc:55943 (ENSPREG00000006823)	sec22ba (ENSPREG00000006853)	imp3 (ENSPREG00000006885)	slc35a3b (ENSPREG00000006922)
Platyfish	MODERN SPECIES	20	ENSXMAG00000023482	ZBTB41 (ENSXMAG00000022434)	ENSXMAG00000004785	ENSXMAG00000004782	ahsg2 (ENSXMAG00000027393)	ENSXMAG00000004777	pfn2a (ENSXMAG00000006883)	TSC22D2 (ENSXMAG00000004776)	ENSXMAG00000004764	cpdp (ENSXMAG00000004751)	NMUR1 (ENSXMAG00000023028)	ephb3a (ENSXMAG00000004673)	ENSXMAG00000026311	ENSXMAG00000004672	PIK3CA (ENSXMAG00000004639)	tbl1xr1b (ENSXMAG00000004615) ##22	b3gnt5b (ENSXMAG00000019560)	eif4a2 (ENSXMAG00000004590)	SETD9 (ENSXMAG00000019559)	dcun1d1 (ENSXMAG00000004579)	ENSXMAG00000004576	ENSXMAG00000004550	ripk2 (ENSXMAG00000022988)	asip2b (ENSXMAG00000004538)	zgc:153115 (ENSXMAG00000025638)	tsen15 (ENSXMAG00000004530)	ENSXMAG00000025151	sec22ba (ENSXMAG00000004514)	imp3 (ENSXMAG00000023049)	slc35a3b (ENSXMAG00000004481)	FAM78B (ENSXMAG00000004478)
NAME_4	ANCESTRAL SPECIES	35	ENSGT00550000075080	ENSGT00940000155152.f.a	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b	ENSGT00940000160465.k.b	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00390000001437	ENSGT00940000154552.h	ENSGT00390000015010	ENSGT00940000175258	ENSGT00940000164654	ENSGT00940000156113	ENSGT00390000005651.n	ENSGT00940000164815.a	ENSGT00390000014781	ENSGT00390000014594.e.b	ENSGT00940000164993.g	ENSGT00940000156349.d	ENSGT00550000075090
Sheepshead minnow	MODERN SPECIES	169	ENSCVAG00000008221	ENSCVAG00000008271	ZBTB41 (ENSCVAG00000008327)	ENSCVAG00000008347	ahsg2 (ENSCVAG00000008354)	pfn2a (ENSCVAG00000008368)	ENSCVAG00000008379	ENSCVAG00000008388	cpdp (ENSCVAG00000008431)	NMUR1 (ENSCVAG00000008570)	ephb3a (ENSCVAG00000008639)	ENSCVAG00000008698	ENSCVAG00000008712	PIK3CA (ENSCVAG00000008772)	kcnmb2 (ENSCVAG00000008786)	tbl1xr1b (ENSCVAG00000008817) ##22	b3gnt5b (ENSCVAG00000008823)
Mummichog	MODERN SPECIES	2184	ENSFHEG00000016290	ENSFHEG00000016318	ahsg2 (ENSFHEG00000016329)	ENSFHEG00000016340	pfn2a (ENSFHEG00000016354)	ENSFHEG00000016361	ENSFHEG00000016371	ENSFHEG00000016387	cpdp (ENSFHEG00000016469)	NMUR1 (ENSFHEG00000016481)	ephb3a (ENSFHEG00000016535)	ENSFHEG00000016565	KCNMB3 (ENSFHEG00000016590)	PIK3CA (ENSFHEG00000016646)	kcnmb2 (ENSFHEG00000016648)	tbl1xr1b (ENSFHEG00000016714) ##22	b3gnt5b (ENSFHEG00000000420)	eif4a2 (ENSFHEG00000016755)	SETD9 (ENSFHEG00000016766)	dcun1d1 (ENSFHEG00000016781)	ENSFHEG00000016792	ENSFHEG00000016802	ENSFHEG00000016845	ripk2 (ENSFHEG00000016857)	ENSFHEG00000016861	ENSFHEG00000016879	zgc:153115 (ENSFHEG00000016887)	tsen15 (ENSFHEG00000016908)	zgc:55943 (ENSFHEG00000016927)	sec22ba (ENSFHEG00000016935)	imp3 (ENSFHEG00000016954)
Aplocheiloidei	ANCESTRAL SPECIES	19	ENSGT00550000075080	ENSGT00940000155152.f.a	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b	ENSGT00940000160465.k.b	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00390000001437	ENSGT00390000015010	ENSGT00940000164654	ENSGT00940000156113
Mangrove rivulus	MODERN SPECIES	52	ZBTB41 (ENSKMAG00000004732)	ENSKMAG00000004695	ENSKMAG00000004664	ahsg2 (ENSKMAG00000004648)	ENSKMAG00000004631	pfn2a (ENSKMAG00000004615)	TSC22D2 (ENSKMAG00000004573)	ENSKMAG00000004518	cpdp (ENSKMAG00000004465)	NMUR1 (ENSKMAG00000004444)	ephb3a (ENSKMAG00000004416)	ENSKMAG00000004374	KCNMB3 (ENSKMAG00000004327)	PIK3CA (ENSKMAG00000004238)	kcnmb2 (ENSKMAG00000004204)	tbl1xr1b (ENSKMAG00000004131) ##22	b3gnt5b (ENSKMAG00000004118)	eif4a2 (ENSKMAG00000004019)	SETD9 (ENSKMAG00000003992)	ENSKMAG00000003971	ENSKMAG00000003936	ripk2 (ENSKMAG00000003912)
Oryzias	ANCESTRAL SPECIES	12	ENSGT00940000155152.f.a	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b	ENSGT00940000160465.k.b	ENSGT00940000159144.C	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00390000001437	ENSGT00940000154552.h	ENSGT00390000015010	ENSGT00950000182904.a.b.b.a	ENSGT00940000166235	ENSGT00940000167296	ENSGT00940000160748.b	ENSGT00390000006166.a	ENSGT00940000157019.g.b	ENSGT00390000012240	ENSGT00390000007336.a.b	ENSGT00940000154930.db	ENSGT00940000157285.e
Oryzias_b	ANCESTRAL SPECIES	8	ENSGT00550000075080	ENSGT00940000155152.f.a	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b	ENSGT00940000160465.k.b	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00390000001437	ENSGT00940000154552.h	ENSGT00390000015010	ENSGT00950000182904.a.b.b.a	ENSGT00940000166235	ENSGT00940000167296	ENSGT00940000160748.b	ENSGT00390000006166.a	ENSGT00940000157019.g.b	ENSGT00390000012240	ENSGT00390000007336.a.b	ENSGT00940000154930.db	ENSGT00940000157285.e
Indian medaka	MODERN SPECIES	10	ZBTB41 (ENSOMEG00000006807)	ENSOMEG00000006778	ENSOMEG00000006752	ENSOMEG00000006728	ENSOMEG00000006690	pfn2a (ENSOMEG00000006667)	ENSOMEG00000006633	ENSOMEG00000006553	cpdp (ENSOMEG00000006535)	NMUR1 (ENSOMEG00000006506)	ephb3a (ENSOMEG00000006466)	ENSOMEG00000006371	KCNMB3 (ENSOMEG00000006345)	PIK3CA (ENSOMEG00000006322)	kcnmb2 (ENSOMEG00000006266)	tbl1xr1b (ENSOMEG00000006240) ##22	b3gnt5b (ENSOMEG00000006180)	eif4a2 (ENSOMEG00000006138)	SETD9 (ENSOMEG00000006070)	dcun1d1 (ENSOMEG00000006059)	ENSOMEG00000006042	kcnn1a (ENSOMEG00000005998)	ENSOMEG00000005931	zgc:154006 (ENSOMEG00000005923)	nr2f6a (ENSOMEG00000005887)	plvapa (ENSOMEG00000005836)	ANO8 (ENSOMEG00000005790)	mrpl34 (ENSOMEG00000005718)	ABHD8 (ENSOMEG00000005696)	ENSOMEG00000005643	st3gal3b (ENSOMEG00000005582)
Javanese ricefish	MODERN SPECIES	8	ZBTB41 (ENSOJAG00000012682)	ENSOJAG00000012634	ENSOJAG00000012596	ENSOJAG00000012541	ENSOJAG00000012530	pfn2a (ENSOJAG00000012498)	ENSOJAG00000012484	ENSOJAG00000012469	cpdp (ENSOJAG00000012427)	NMUR1 (ENSOJAG00000012417)	ephb3a (ENSOJAG00000012302)	ENSOJAG00000012264	KCNMB3 (ENSOJAG00000012188)	PIK3CA (ENSOJAG00000012146)	kcnmb2 (ENSOJAG00000012127)	tbl1xr1b (ENSOJAG00000011923) ##22	eif4a2 (ENSOJAG00000011366)	SETD9 (ENSOJAG00000011293)	dcun1d1 (ENSOJAG00000011275)	ENSOJAG00000011189	kcnn1a (ENSOJAG00000011022)	ENSOJAG00000011006	zgc:154006 (ENSOJAG00000010993)	nr2f6a (ENSOJAG00000010960)	ENSOJAG00000010925	ANO8 (ENSOJAG00000010710)	mrpl34 (ENSOJAG00000010689)	ABHD8 (ENSOJAG00000010622)	ENSOJAG00000010264	st3gal3b (ENSOJAG00000010084)	ENSOJAG00000010069
Oryzias_a	ANCESTRAL SPECIES	7	ENSGT00940000155152.f.a	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b	ENSGT00940000160465.k.b	ENSGT00940000159144.C	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00390000001437	ENSGT00940000154552.h	ENSGT00390000015010	ENSGT00950000182904.a.b.b.a	ENSGT00940000166235	ENSGT00940000167296	ENSGT00940000160748.b	ENSGT00390000006166.a	ENSGT00940000157019.g.b	ENSGT00390000012240	ENSGT00390000007336.a.b	ENSGT00940000154930.db	ENSGT00940000157285.e
Japanese Medaka HdrR	MODERN SPECIES	8	ENSORLG00000009129	ENSORLG00000009124	ahsg2 (ENSORLG00000009119)	ENSORLG00000027584	pfn2a (ENSORLG00000009101)	ENSORLG00000009084	ENSORLG00000025910	ENSORLG00000009073	cpdp (ENSORLG00000009040)	ENSORLG00000009022	ephb3a (ENSORLG00000009010)	ENSORLG00000008948	KCNMB3 (ENSORLG00000008941)	PIK3CA (ENSORLG00000008938)	kcnmb2 (ENSORLG00000028724)	tbl1xr1b (ENSORLG00000008876) ##22	b3gnt5b (ENSORLG00000026954)	eif4a2 (ENSORLG00000008838)	SETD9 (ENSORLG00000008815)	dcun1d1 (ENSORLG00000008811)	ENSORLG00000008793	kcnn1a (ENSORLG00000008777)	ENSORLG00000008759	zgc:154006 (ENSORLG00000023132)	nr2f6a (ENSORLG00000008749)	plvapa (ENSORLG00000008728)	ANO8 (ENSORLG00000008720)	mrpl34 (ENSORLG00000008708)	ABHD8 (ENSORLG00000008706)	ENSORLG00000008695	st3gal3b (ENSORLG00000008669)
Chinese medaka	DUPLICATION
Chinese medaka	MODERN SPECIES	181	ZBTB41 (ENSOSIG00000004844)	CRB1 (ENSOSIG00000004805)	ENSOSIG00000004800	ahsg2 (ENSOSIG00000004797)	ENSOSIG00000004788	pfn2a (ENSOSIG00000004781)	TSC22D2 (ENSOSIG00000004775)	ENSOSIG00000004766	cpdp (ENSOSIG00000004756)	NMUR1 (ENSOSIG00000004486)	ephb3a (ENSOSIG00000004208)	ENSOSIG00000004195	KCNMB3 (ENSOSIG00000004189)	PIK3CA (ENSOSIG00000004181)	kcnmb2 (ENSOSIG00000004176)	tbl1xr1b (ENSOSIG00000004116) ##22	b3gnt5b (ENSOSIG00000004099)	eif4a2 (ENSOSIG00000003610)	SETD9 (ENSOSIG00000003573)	dcun1d1 (ENSOSIG00000003568)	ENSOSIG00000003555	kcnn1a (ENSOSIG00000008980)	ENSOSIG00000008976	nr2f6a (ENSOSIG00000008974)	zgc:154006 (ENSOSIG00000008973)	plvapa (ENSOSIG00000008972)	ANO8 (ENSOSIG00000008767)	mrpl34 (ENSOSIG00000008761)	ABHD8 (ENSOSIG00000008760)	ENSOSIG00000008732	st3gal3b (ENSOSIG00000008681)
Chinese medaka	MODERN SPECIES	1098	coa7 (ENSOSIG00000007945)	angptl1a (ENSOSIG00000007944)	ralgps2 (ENSOSIG00000006261)	fam20b (ENSOSIG00000006250)	faslg (ENSOSIG00000006247)	jun (ENSOSIG00000006246)	si:dkey-86e18.1 (ENSOSIG00000006243)	prdx6 (ENSOSIG00000006242)	plpp6 (ENSOSIG00000006241)	ENSOSIG00000006145	ENSOSIG00000005895	si:dkey-239i20.2 (ENSOSIG00000005886)	ENSOSIG00000005880	ENSOSIG00000005878	ENSOSIG00000005869	ENSOSIG00000005863 ##22	ENSOSIG00000005781 ##22	CHCHD4 (ENSOSIG00000005775)	mep1ba (ENSOSIG00000005767)	ENSOSIG00000005764	uhmk1 (ENSOSIG00000005761)	akr1a1b (ENSOSIG00000005742)	ENSOSIG00000005733	SHISAL2A (ENSOSIG00000005730)	ENSOSIG00000005729	PODN (ENSOSIG00000005724)	ENSOSIG00000005718	ZNF648 (ENSOSIG00000005716)	ENSOSIG00000005713	ENSOSIG00000005711	slc30a7 (ENSOSIG00000005709)
Percomorphaceae_C	ANCESTRAL SPECIES	6	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b	ENSGT00940000160465.k.b	ENSGT00940000153664.B.q.a	ENSGT00940000159144.C	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00390000001437	ENSGT00940000154552.h	ENSGT00390000015010	ENSGT00940000175258	ENSGT00940000164654	ENSGT00940000156113	ENSGT00390000005651.n	ENSGT00730000112562	ENSGT00390000002200.a.b	ENSGT00440000038757	ENSGT00940000164815.a	ENSGT01030000234558.C.o	ENSGT00390000014781
Eupercaria	ANCESTRAL SPECIES	22	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b	ENSGT00940000160465.k.b	ENSGT00940000153664.B.q.a	ENSGT00940000159144.C	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00390000001437	ENSGT00940000154552.h	ENSGT00390000015010	ENSGT00940000175258	ENSGT00940000164654	ENSGT00940000156113	ENSGT00390000005651.n	ENSGT00730000112562	ENSGT00390000002200.a.b	ENSGT00440000038757	ENSGT00940000164815.a	ENSGT01030000234558.C.o	ENSGT00390000014781
Tetraodontidae	ANCESTRAL SPECIES	13	ENSGT00550000075080	ENSGT00940000155152.f.a	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b	ENSGT00940000160465.k.b	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00390000001437	ENSGT00940000154552.h	ENSGT00390000015010.c	ENSGT00940000175258	ENSGT00940000164654	ENSGT00940000156113	ENSGT00390000005651.n	ENSGT00730000112562	ENSGT00440000038757	ENSGT00940000164815.a	ENSGT00390000014781	ENSGT00940000164993.g	ENSGT00940000156349.d
Tetraodon	DUPLICATION
Tetraodon	DUPLICATION
Tetraodon	MODERN SPECIES	6	ZBTB41 (ENSTNIG00000007805)	ENSTNIG00000007806	ENSTNIG00000007807	ahsg2 (ENSTNIG00000001472)	ENSTNIG00000007808	pfn2a (ENSTNIG00000007809)	ENSTNIG00000007810	ENSTNIG00000007811	cpdp (ENSTNIG00000007812)	NMUR1 (ENSTNIG00000007813)	ephb3a (ENSTNIG00000007814)	ENSTNIG00000007815	KCNMB3 (ENSTNIG00000007816)	PIK3CA (ENSTNIG00000007817)	kcnmb2 (ENSTNIG00000007818)	tbl1xr1b (ENSTNIG00000007819) ##22	b3gnt5b (ENSTNIG00000007820)	eif4a2 (ENSTNIG00000007821)	SETD9 (ENSTNIG00000007822)	dcun1d1 (ENSTNIG00000007823)	ENSTNIG00000007824	ENSTNIG00000007825	ripk2 (ENSTNIG00000007826)	ENSTNIG00000001007	asip2b (ENSTNIG00000007827)	zgc:153115 (ENSTNIG00000007828)	ENSTNIG00000007829	sec22ba (ENSTNIG00000007830)	slc35a3b (ENSTNIG00000007831)	FAM78B (ENSTNIG00000007832)	CMPK1 (ENSTNIG00000007833)
Tetraodon	MODERN SPECIES	26	ENSTNIG00000002281	ENSTNIG00000002282	ENSTNIG00000019620	hccsb (ENSTNIG00000002284)	ENSTNIG00000002285	ENSTNIG00000002287	polr3f (ENSTNIG00000002288)	ENSTNIG00000002289	ddx17 (ENSTNIG00000002291)	ENSTNIG00000000643	ENSTNIG00000000078	ENSTNIG00000001288	ENSTNIG00000002292	ENSTNIG00000000281	ENSTNIG00000002295	tbl1xr1b (ENSTNIG00000002296) ##22	ENSTNIG00000002297	nol4lb (ENSTNIG00000002298)	ENSTNIG00000002299	ptk6b (ENSTNIG00000002300)	SLC16A1 (ENSTNIG00000002301)	ENSTNIG00000002302	ENSTNIG00000002304	ENSTNIG00000002306	ENSTNIG00000002307	zgc:110540 (ENSTNIG00000002308)	ENSTNIG00000002309	ENSTNIG00000002310	ENSTNIG00000002311	lgalsla (ENSTNIG00000002312)	ENSTNIG00000002314
Tetraodon	MODERN SPECIES	26	tspan13a (ENSTNIG00000002353)	ENSTNIG00000002354	ENSTNIG00000002356	ENSTNIG00000002357	ENSTNIG00000002359	ENSTNIG00000002360	ENSTNIG00000002362	ENSTNIG00000002363	rgma (ENSTNIG00000001545)	ENSTNIG00000002365	n4bp1 (ENSTNIG00000002366)	siah1 (ENSTNIG00000002367)	ENSTNIG00000002368	ENSTNIG00000002374	ENSTNIG00000002375	ENSTNIG00000002376 ##22	ENSTNIG00000002377	ENSTNIG00000002378	ENSTNIG00000002379	ENSTNIG00000002380	glt8d2 (ENSTNIG00000003326)	ENSTNIG00000002382	ENSTNIG00000000133	sars1 (ENSTNIG00000002383)	ENSTNIG00000002384	KCNJ15 (ENSTNIG00000002385)	ENSTNIG00000002386	ENSTNIG00000002387	mipa (ENSTNIG00000002388)	sp5a (ENSTNIG00000002389)	sox17 (ENSTNIG00000002391)
Fugu	MODERN SPECIES	14	ENSTRUG00000009186	ENSTRUG00000009169	ahsg2 (ENSTRUG00000030626)	ENSTRUG00000028228	pfn2a (ENSTRUG00000028411)	ENSTRUG00000008978	ENSTRUG00000026159	ENSTRUG00000008895	cpdp (ENSTRUG00000008782)	NMUR1 (ENSTRUG00000008581)	ephb3a (ENSTRUG00000007205)	ENSTRUG00000007123	KCNMB3 (ENSTRUG00000032535)	PIK3CA (ENSTRUG00000006539)	kcnmb2 (ENSTRUG00000006378)	tbl1xr1b (ENSTRUG00000006095) ##22	b3gnt5b (ENSTRUG00000006060)	eif4a2 (ENSTRUG00000022264)	SETD9 (ENSTRUG00000005655)	dcun1d1 (ENSTRUG00000005458)	ENSTRUG00000033046	ENSTRUG00000029950	ENSTRUG00000004350	ripk2 (ENSTRUG00000003970)	agrp2 (ENSTRUG00000003952)	ENSTRUG00000031726	zgc:153115 (ENSTRUG00000026717)	tsen15 (ENSTRUG00000019820)	ENSTRUG00000003545	sec22ba (ENSTRUG00000027295)	imp3 (ENSTRUG00000025783)
Eupecaria_A	ANCESTRAL SPECIES	8	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b	ENSGT00940000160465.k.b	ENSGT00940000153664.B.q.a	ENSGT00940000159144.C	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00390000001437	ENSGT00940000154552.h	ENSGT00390000015010	ENSGT00940000175258	ENSGT00940000164654	ENSGT00940000156113	ENSGT00390000005651.n	ENSGT00730000112562	ENSGT00390000002200.a.b	ENSGT00440000038757	ENSGT00940000164815.a	ENSGT01030000234558.C.o	ENSGT00390000014781
Eupecaria_B	ANCESTRAL SPECIES	8	ENSGT00550000075080	ENSGT00940000155152.f.a	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b	ENSGT00940000160465.k.b	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00390000001437	ENSGT00940000154552.h	ENSGT00390000015010	ENSGT00940000175258	ENSGT00940000164654	ENSGT00940000156113	ENSGT00390000005651.n	ENSGT00730000112562	ENSGT00390000002200.a.b	ENSGT00440000038757	ENSGT00940000164815.a	ENSGT01030000234558.C.o	ENSGT00390000014781
Eupecaria_C	ANCESTRAL SPECIES	10	ENSGT00550000075080	ENSGT00940000155152.f.a	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b	ENSGT00940000160465.k.b	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00390000001437	ENSGT00940000154552.h	ENSGT00390000015010	ENSGT00940000175258	ENSGT00940000164654	ENSGT00940000156113	ENSGT00390000005651.n	ENSGT00730000112562	ENSGT00390000002200.a.b	ENSGT00440000038757	ENSGT00940000164815.a	ENSGT01030000234558.C.o	ENSGT00390000014781
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	8	ENSGT00550000075080	ENSGT00940000155152.f.a	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b	ENSGT00940000160465.k.b	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00390000001437	ENSGT00940000154552.h	ENSGT00390000015010	ENSGT00940000175258	ENSGT00940000164654	ENSGT00940000156113	ENSGT00390000005651.n	ENSGT00730000112562	ENSGT00390000002200.a.b	ENSGT00440000038757	ENSGT00940000164815.a	ENSGT01030000234558.C.o	ENSGT00390000014781
European seabass	MODERN SPECIES		ENSDLAG00005019090	ENSDLAG00005019097	ENSDLAG00005019107	ENSDLAG00005019115	ENSDLAG00005019132	ENSDLAG00005026613	ENSDLAG00005019146	ENSDLAG00005000067	ENSDLAG00005000068	ENSDLAG00005000078	ephb3a (ENSDLAG00005000091)	ENSDLAG00005000156	ENSDLAG00005000198	KCNMB3 (ENSDLAG00005000174)	kcnmb2 (ENSDLAG00005000235)	tbl1xr1b (ENSDLAG00005000249) ##22	b3gnt5b (ENSDLAG00005033316)	eif4a2 (ENSDLAG00005000328)	ENSDLAG00005000765	dcun1d1 (ENSDLAG00005031250)	ENSDLAG00005000787	ENSDLAG00005031436	ENSDLAG00005000804	ENSDLAG00005000865	asip2b (ENSDLAG00005000869)	ENSDLAG00005000890	ENSDLAG00005026586	zgc:153115 (ENSDLAG00005029219)	ENSDLAG00005000952	tsen15 (ENSDLAG00005001162)	ENSDLAG00005001165
Large yellow croaker	MODERN SPECIES	483	ZBTB41 (ENSLCRG00005014087)	ENSLCRG00005014086	ENSLCRG00005014084	ahsg2 (ENSLCRG00005014083)	ENSLCRG00005014082	pfn2a (ENSLCRG00005014079)	ENSLCRG00005014078	ENSLCRG00005014077	cpdp (ENSLCRG00005014052)	NMUR1 (ENSLCRG00005014050)	ephb3a (ENSLCRG00005014034)	ENSLCRG00005014033	KCNMB3 (ENSLCRG00005014031)	PIK3CA (ENSLCRG00005014030)	kcnmb2 (ENSLCRG00005014029)	tbl1xr1b (ENSLCRG00005013998) ##22	b3gnt5b (ENSLCRG00005013994)	eif4a2 (ENSLCRG00005013053)	SETD9 (ENSLCRG00005013042)	dcun1d1 (ENSLCRG00005013035)	dcun1d1 (ENSLCRG00005013041)	ENSLCRG00005013030	ENSLCRG00005013027	ENSLCRG00005013002	ripk2 (ENSLCRG00005013000)	ENSLCRG00005012997	asip2b (ENSLCRG00005012996)	ENSLCRG00005012993	zgc:153115 (ENSLCRG00005012992)	ENSLCRG00005012797	tsen15 (ENSLCRG00005012790)
Gilthead seabream	MODERN SPECIES	13	ZBTB41 (ENSSAUG00010006915)	ENSSAUG00010006912	ENSSAUG00010006911	ahsg2 (ENSSAUG00010006906)	ENSSAUG00010006902	pfn2a (ENSSAUG00010006900)	ENSSAUG00010006895	ENSSAUG00010006893	cpdp (ENSSAUG00010006884)	NMUR1 (ENSSAUG00010006881)	ephb3a (ENSSAUG00010006876)	ENSSAUG00010006871	KCNMB3 (ENSSAUG00010006868)	PIK3CA (ENSSAUG00010006864)	kcnmb2 (ENSSAUG00010006862)	tbl1xr1b (ENSSAUG00010006837) ##22	b3gnt5b (ENSSAUG00010006833)	eif4a2 (ENSSAUG00010003297)	SETD9 (ENSSAUG00010003239)	dcun1d1 (ENSSAUG00010003208)	ENSSAUG00010003192	ENSSAUG00010003184	ENSSAUG00010003175	ENSSAUG00010003169	catip (ENSSAUG00010003163)	ENSSAUG00010003126	tmbim1a (ENSSAUG00010002960)	mcm6 (ENSSAUG00010002843)	ENSSAUG00010002800	ENSSAUG00010025856	NDUFB3 (ENSSAUG00010025848)
Perciformes	ANCESTRAL SPECIES	5	ENSGT00550000075080	ENSGT00940000155152.f.a	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b	ENSGT00940000160465.k.b	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00390000001437	ENSGT00940000154552.h	ENSGT00390000015010	ENSGT00940000175258	ENSGT00940000164654	ENSGT00940000156113	ENSGT00730000112562	ENSGT00390000002200.a.b	ENSGT00440000038757	ENSGT00940000164815.a	ENSGT01030000234558.C.o	ENSGT00390000014781	ENSGT00940000164993.g
Perciformes_a	ANCESTRAL SPECIES	24	ENSGT00550000075080	ENSGT00940000155152.f.a	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b	ENSGT00940000160465.k.b	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00390000001437	ENSGT00940000154552.h	ENSGT00390000015010	ENSGT00940000175258	ENSGT00940000164654	ENSGT00940000156113	ENSGT00730000112562	ENSGT00390000002200.a.b	ENSGT00940000164815.a	ENSGT01030000234558.C.o	ENSGT00390000014781	ENSGT00940000164993.g	ENSGT00940000156349.d
Pike perch	MODERN SPECIES	12	ZBTB41 (ENSSLUG00000002949)	ENSSLUG00000002988	ENSSLUG00000003003	ahsg2 (ENSSLUG00000003019)	ENSSLUG00000003033	pfn2a (ENSSLUG00000003049)	ENSSLUG00000003077	ENSSLUG00000003103	cpdp (ENSSLUG00000003152)	NMUR1 (ENSSLUG00000003264)	ephb3a (ENSSLUG00000003290)	ENSSLUG00000003353	ENSSLUG00000003399	PIK3CA (ENSSLUG00000003449)	kcnmb2 (ENSSLUG00000003507)	tbl1xr1b (ENSSLUG00000003579) ##22	b3gnt5b (ENSSLUG00000003704)	ENSSLUG00000003710	ENSSLUG00000003722	eif4a2 (ENSSLUG00000003919)	SETD9 (ENSSLUG00000006115)	dcun1d1 (ENSSLUG00000006128)	ENSSLUG00000006163	ENSSLUG00000006175	ENSSLUG00000006187	ripk2 (ENSSLUG00000006234)	asip2b (ENSSLUG00000006255)	ENSSLUG00000006272	zgc:153115 (ENSSLUG00000006291)	ENSSLUG00000006326	tsen15 (ENSSLUG00000006963)
Channel bull blenny	MODERN SPECIES	8	RGS2 (ENSCGOG00000019869)	ro60 (ENSCGOG00000019870)	cdc73 (ENSCGOG00000019880)	ENSCGOG00000020390	ENSCGOG00000020392	ENSCGOG00000020393	ZBTB41 (ENSCGOG00000020395)	CRB1 (ENSCGOG00000020396)	cpdp (ENSCGOG00000020402)	NMUR1 (ENSCGOG00000020431)	ephb3a (ENSCGOG00000020434)	ENSCGOG00000020446	KCNMB3 (ENSCGOG00000020455)	PIK3CA (ENSCGOG00000020492)	kcnmb2 (ENSCGOG00000021143)	tbl1xr1b (ENSCGOG00000021152) ##22	b3gnt5b (ENSCGOG00000021433)	eif4a2 (ENSCGOG00000021455)	SETD9 (ENSCGOG00000022152)	dcun1d1 (ENSCGOG00000022153)	ENSCGOG00000022179	ENSCGOG00000022187	ENSCGOG00000022189	ripk2 (ENSCGOG00000022333)	asip2b (ENSCGOG00000022341)	ENSCGOG00000010440	ENSCGOG00000010553	ENSCGOG00000010563	ENSCGOG00000010571	zgc:153115 (ENSCGOG00000010574)	ENSCGOG00000010583
Cottioidei	ANCESTRAL SPECIES	15	ENSGT00940000154967.a.b.a.b	ENSGT00550000075080	ENSGT00940000155152.f.a	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000153664.B.q.b.b	ENSGT00940000160465.k.b	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00390000001437	ENSGT00940000154552.h	ENSGT00390000015010	ENSGT00940000164654	ENSGT00940000156113	ENSGT00730000112562	ENSGT00390000002200.a.b	ENSGT00440000038757	ENSGT00940000164815.a	ENSGT00390000014781	ENSGT00940000164993.g	ENSGT00940000156349.d	ENSGT00550000075090
Lumpfish	MODERN SPECIES	8	ENSCLMG00005004584	ZBTB41 (ENSCLMG00005004610)	ENSCLMG00005004631	ENSCLMG00005004652	ahsg2 (ENSCLMG00005004670)	pfn2a (ENSCLMG00005004680)	ENSCLMG00005004690	ENSCLMG00005004711	cpdp (ENSCLMG00005004740)	NMUR1 (ENSCLMG00005004767)	ephb3a (ENSCLMG00005004777)	ENSCLMG00005004788	KCNMB3 (ENSCLMG00005004798)	PIK3CA (ENSCLMG00005004900)	kcnmb2 (ENSCLMG00005004916)	tbl1xr1b (ENSCLMG00005004931) ##22	b3gnt5b (ENSCLMG00005004936)	eif4a2 (ENSCLMG00005004968)	SETD9 (ENSCLMG00005008493)	dcun1d1 (ENSCLMG00005008495)	ENSCLMG00005008497	ENSCLMG00005008500	ripk2 (ENSCLMG00005008706)	asip2b (ENSCLMG00005008707)	ENSCLMG00005008710	zgc:153115 (ENSCLMG00005008715)	ENSCLMG00005008716	tsen15 (ENSCLMG00005008717)	ENSCLMG00005008718	sec22ba (ENSCLMG00005008719)	imp3 (ENSCLMG00005008720)
Stickleback	MODERN SPECIES	2	ENSGACG00000016104	ZBTB41 (ENSGACG00000016102)	ENSGACG00000016101	ENSGACG00000016099	ENSGACG00000016098	ahsg2 (ENSGACG00000016095)	pfn2a (ENSGACG00000016091)	ENSGACG00000016090	ENSGACG00000016088	cpdp (ENSGACG00000016081)	NMUR1 (ENSGACG00000016080)	ephb3a (ENSGACG00000016078)	KCNMB3 (ENSGACG00000016076)	PIK3CA (ENSGACG00000016071)	kcnmb2 (ENSGACG00000016069)	tbl1xr1b (ENSGACG00000016066) ##22	b3gnt5b (ENSGACG00000016065)	eif4a2 (ENSGACG00000016054)	ENSGACG00000016053	dcun1d1 (ENSGACG00000016043)	ENSGACG00000016039	ENSGACG00000016037	ENSGACG00000016031	ripk2 (ENSGACG00000016028)	ENSGACG00000016010	ENSGACG00000016007	zgc:153115 (ENSGACG00000016005)	ENSGACG00000016003	sec22ba (ENSGACG00000016000)	imp3 (ENSGACG00000015998)	slc35a3b (ENSGACG00000015994)
Ballan wrasse	MODERN SPECIES	10	ENSLBEG00000009350	ahsg2 (ENSLBEG00000009334)	ENSLBEG00000009307	pfn2a (ENSLBEG00000009298)	ENSLBEG00000009286	ENSLBEG00000009275	ENSLBEG00000009232	cpdp (ENSLBEG00000009180)	NMUR1 (ENSLBEG00000009151)	ephb3a (ENSLBEG00000009099)	ENSLBEG00000009045	KCNMB3 (ENSLBEG00000009017)	PIK3CA (ENSLBEG00000008942)	ENSLBEG00000008905	kcnmb2 (ENSLBEG00000008878)	tbl1xr1b (ENSLBEG00000008787) ##22	b3gnt5b (ENSLBEG00000008765)	eif4a2 (ENSLBEG00000008635)	SETD9 (ENSLBEG00000008615)	dcun1d1 (ENSLBEG00000008563)	ENSLBEG00000008527	ENSLBEG00000008498	ENSLBEG00000008461	ripk2 (ENSLBEG00000008437)	ENSLBEG00000008418	asip2b (ENSLBEG00000008391)	ENSLBEG00000008339	ENSLBEG00000008307	zgc:153115 (ENSLBEG00000008286)	tsen15 (ENSLBEG00000008267)	ENSLBEG00000008238
Percomorphaceae_D	ANCESTRAL SPECIES	6	ENSGT00550000075080	ENSGT00940000155152.f.a	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b	ENSGT00940000160465.k.b	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00390000001437	ENSGT00940000154552.h	ENSGT00390000015010	ENSGT00940000175258	ENSGT00940000164654	ENSGT00940000156113	ENSGT00390000005651.n	ENSGT00730000112562	ENSGT00390000002200.a.b	ENSGT00440000038757	ENSGT00940000164815.a	ENSGT01030000234558.C.o	ENSGT00390000014781
Anabantaria	ANCESTRAL SPECIES	8	ENSGT00550000075080	ENSGT00940000155152.f.a	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b	ENSGT00940000160465.k.b	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00390000001437	ENSGT00940000154552.h	ENSGT00390000015010	ENSGT00940000164654	ENSGT00940000156113	ENSGT00730000112562	ENSGT00390000002200.a.b	ENSGT00440000038757	ENSGT00940000164815.a	ENSGT01030000234558.C.o	ENSGT00390000014781	ENSGT00940000164993.g	ENSGT00940000156349.d
Zig-zag eel	MODERN SPECIES	8	ENSMAMG00000002166	ENSMAMG00000002217	ENSMAMG00000028233	ENSMAMG00000002272	ENSMAMG00000025043	ENSMAMG00000002324	ENSMAMG00000002337	ENSMAMG00000002358	ENSMAMG00000002375	ENSMAMG00000002412	ephb3a (ENSMAMG00000002437)	ENSMAMG00000002481	KCNMB3 (ENSMAMG00000002512)	PIK3CA (ENSMAMG00000002539)	kcnmb2 (ENSMAMG00000002635)	tbl1xr1b (ENSMAMG00000002656) ##22	b3gnt5b (ENSMAMG00000002726)	eif4a2 (ENSMAMG00000002729)	ENSMAMG00000002799	dcun1d1 (ENSMAMG00000002812)	ENSMAMG00000002870	ENSMAMG00000002943	ripk2 (ENSMAMG00000002954)	asip2b (ENSMAMG00000002971)	ENSMAMG00000002984	ENSMAMG00000028693	zgc:153115 (ENSMAMG00000024429)	ENSMAMG00000003060	tsen15 (ENSMAMG00000027466)	ENSMAMG00000025423	sec22ba (ENSMAMG00000003199)
Anabantoidei	ANCESTRAL SPECIES	18	ENSGT00550000075080	ENSGT00940000155152.f.a	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b	ENSGT00940000160465.k.b	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00390000001437	ENSGT00940000154552.h	ENSGT00390000015010	ENSGT00940000164654	ENSGT00940000156113	ENSGT00730000112562	ENSGT00390000002200.a.b	ENSGT00440000038757	ENSGT00940000164815.a	ENSGT00390000014781	ENSGT00940000164993.g	ENSGT00940000156349.d	ENSGT00550000075090
Siamese fighting fish	MODERN SPECIES	8	ZBTB41 (ENSBSLG00000024230)	CRB1 (ENSBSLG00000024224)	ENSBSLG00000024216	ahsg2 (ENSBSLG00000024208)	ENSBSLG00000024205	pfn2a (ENSBSLG00000024201)	ENSBSLG00000024198	ENSBSLG00000024192	cpdp (ENSBSLG00000024184)	NMUR1 (ENSBSLG00000024180)	ephb3a (ENSBSLG00000024152)	ENSBSLG00000024130	KCNMB3 (ENSBSLG00000024127)	PIK3CA (ENSBSLG00000024054)	kcnmb2 (ENSBSLG00000024048)	tbl1xr1b (ENSBSLG00000023955) ##22	b3gnt5b (ENSBSLG00000023937)	eif4a2 (ENSBSLG00000023076)	SETD9 (ENSBSLG00000022983)	dcun1d1 (ENSBSLG00000022963)	ENSBSLG00000022897	ENSBSLG00000022823	ripk2 (ENSBSLG00000022592)	asip2b (ENSBSLG00000022588)	ENSBSLG00000022539	ENSBSLG00000022526	zgc:153115 (ENSBSLG00000022522)	tsen15 (ENSBSLG00000022515)	ENSBSLG00000022499	sec22ba (ENSBSLG00000022495)	imp3 (ENSBSLG00000022482)
Climbing perch	MODERN SPECIES	8	ENSATEG00000021020	ENSATEG00000021005	ENSATEG00000020992	ENSATEG00000020970	ENSATEG00000029028	ENSATEG00000028226	ENSATEG00000020952	ENSATEG00000020932	ENSATEG00000020919	ENSATEG00000020848	ephb3a (ENSATEG00000020787)	ENSATEG00000020758	KCNMB3 (ENSATEG00000020745)	PIK3CA (ENSATEG00000020692)	kcnmb2 (ENSATEG00000020679)	tbl1xr1b (ENSATEG00000020626) ##22	b3gnt5b (ENSATEG00000020610)	eif4a2 (ENSATEG00000020546)	ENSATEG00000027523	dcun1d1 (ENSATEG00000020498)	ENSATEG00000020334	ENSATEG00000020303	ripk2 (ENSATEG00000020286)	asip2b (ENSATEG00000025857)	ENSATEG00000020252	ENSATEG00000029341	zgc:153115 (ENSATEG00000028284)	ENSATEG00000020117	tsen15 (ENSATEG00000020082)	ENSATEG00000027698	sec22ba (ENSATEG00000020043)
Carangaria	ANCESTRAL SPECIES	5	ENSGT00550000075080	ENSGT00940000155152.f.a	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b	ENSGT00940000160465.k.b	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00390000001437	ENSGT00940000154552.h	ENSGT00390000015010	ENSGT00940000175258	ENSGT00940000164654	ENSGT00940000156113	ENSGT00390000005651.n	ENSGT00730000112562	ENSGT00390000002200.a.b	ENSGT00440000038757	ENSGT00940000164815.a	ENSGT01030000234558.C.o	ENSGT00390000014781
Pleuronectoidei	ANCESTRAL SPECIES	1	ENSGT00550000075080	ENSGT00940000155152.f.a	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b	ENSGT00940000160465.k.b	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00390000001437	ENSGT00940000154552.h	ENSGT00390000015010	ENSGT00940000175258	ENSGT00940000164654	ENSGT00940000156113	ENSGT00730000112562	ENSGT00390000002200.a.b	ENSGT00940000164815.a	ENSGT01030000234558.C.o	ENSGT00390000014781	ENSGT00940000164993.g	ENSGT00940000156349.d
Tongue sole	DUPLICATION
Tongue sole	MODERN SPECIES	12	ENSCSEG00000017291	bcl6ab (ENSCSEG00000017272)	cmpk (ENSCSEG00000017234)	FAM78B (ENSCSEG00000017222)	slc35a3b (ENSCSEG00000017209)	imp3 (ENSCSEG00000017200)	sec22ba (ENSCSEG00000017193)	ENSCSEG00000017187	tsen15 (ENSCSEG00000017178)	zgc:153115 (ENSCSEG00000017174)	ENSCSEG00000017153	ENSCSEG00000017147	ripk2 (ENSCSEG00000017135)	ENSCSEG00000017124	ENSCSEG00000017115 ##22	tbl1xr1b (ENSCSEG00000017107) ##22	b3gnt5b (ENSCSEG00000017101)	eif4a2 (ENSCSEG00000017096)	eif4a2 (ENSCSEG00000017054)	SETD9 (ENSCSEG00000017042)	dcun1d1 (ENSCSEG00000017028)	ENSCSEG00000017009	kcnmb2 (ENSCSEG00000016994)	PIK3CA (ENSCSEG00000016974)	KCNMB3 (ENSCSEG00000016968)	ENSCSEG00000016959	itm2cb (ENSCSEG00000016949)	hes6 (ENSCSEG00000016937)	per2 (ENSCSEG00000016878)	ENSCSEG00000016857	ENSCSEG00000016847
Tongue sole	MODERN SPECIES	12	ENSCSEG00000017300	ENSCSEG00000017291	bcl6ab (ENSCSEG00000017272)	cmpk (ENSCSEG00000017234)	FAM78B (ENSCSEG00000017222)	slc35a3b (ENSCSEG00000017209)	imp3 (ENSCSEG00000017200)	sec22ba (ENSCSEG00000017193)	ENSCSEG00000017187	tsen15 (ENSCSEG00000017178)	zgc:153115 (ENSCSEG00000017174)	ENSCSEG00000017153	ENSCSEG00000017147	ripk2 (ENSCSEG00000017135)	ENSCSEG00000017124	ENSCSEG00000017115 ##22	tbl1xr1b (ENSCSEG00000017107) ##22	b3gnt5b (ENSCSEG00000017101)	eif4a2 (ENSCSEG00000017096)	eif4a2 (ENSCSEG00000017054)	SETD9 (ENSCSEG00000017042)	dcun1d1 (ENSCSEG00000017028)	ENSCSEG00000017009	kcnmb2 (ENSCSEG00000016994)	PIK3CA (ENSCSEG00000016974)	KCNMB3 (ENSCSEG00000016968)	ENSCSEG00000016959	itm2cb (ENSCSEG00000016949)	hes6 (ENSCSEG00000016937)	per2 (ENSCSEG00000016878)	ENSCSEG00000016857
Turbot	MODERN SPECIES	19	ENSSMAG00000008894	ENSSMAG00000008863	ENSSMAG00000008941	ENSSMAG00000008883	ENSSMAG00000025390	ENSSMAG00000034994	ENSSMAG00000008830	ENSSMAG00000008798	ENSSMAG00000008710	ENSSMAG00000008669	ephb3a (ENSSMAG00000008629)	ENSSMAG00000008601	KCNMB3 (ENSSMAG00000008578)	PIK3CA (ENSSMAG00000008518)	kcnmb2 (ENSSMAG00000008500)	tbl1xr1b (ENSSMAG00000008463) ##22	b3gnt5b (ENSSMAG00000008457)	eif4a2 (ENSSMAG00000008350)	ENSSMAG00000025448	dcun1d1 (ENSSMAG00000024319)	ENSSMAG00000008270	ENSSMAG00000036779	ENSSMAG00000008216	ripk2 (ENSSMAG00000008119)	asip2b (ENSSMAG00000034712)	ENSSMAG00000008039	zgc:153115 (ENSSMAG00000031912)	ENSSMAG00000007948	ENSSMAG00000007907	ENSSMAG00000007888	imp3 (ENSSMAG00000007865)
Carangaria_A	ANCESTRAL SPECIES	2	ENSGT00550000075080	ENSGT00940000155152.f.a	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b	ENSGT00940000160465.k.b	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00390000001437	ENSGT00940000154552.h	ENSGT00390000015010	ENSGT00940000175258	ENSGT00940000164654	ENSGT00940000156113	ENSGT00390000005651.n	ENSGT00730000112562	ENSGT00390000002200.a.b	ENSGT00440000038757	ENSGT00940000164815.a	ENSGT01030000234558.C.o	ENSGT00390000014781
Seriola	ANCESTRAL SPECIES		ENSGT00550000075080	ENSGT00940000155152.f.a	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b	ENSGT00940000160465.k.b	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00390000001437	ENSGT00940000154552.g.a	ENSGT00390000015010	ENSGT00940000175258	ENSGT00940000164654	ENSGT00940000156113	ENSGT00730000112562	ENSGT00390000002200.a.b	ENSGT00440000038757	ENSGT00940000164815.a	ENSGT01030000234558.C.o	ENSGT00390000014781	ENSGT00940000164993.g
Yellowtail amberjack	MODERN SPECIES	2934									cpdp (ENSSLDG00000014935)	NMUR1 (ENSSLDG00000014982)	ephb3a (ENSSLDG00000014994)	ENSSLDG00000015013	KCNMB3 (ENSSLDG00000015075)	PIK3CA (ENSSLDG00000015103)	kcnmb2 (ENSSLDG00000015156)	tbl1xr1b (ENSSLDG00000015173) ##22	b3gnt5b (ENSSLDG00000015191)	eif4a2 (ENSSLDG00000015202)	SETD9 (ENSSLDG00000015300)	dcun1d1 (ENSSLDG00000015310)	ENSSLDG00000015329	ENSSLDG00000015354	ENSSLDG00000015366	ripk2 (ENSSLDG00000015401)	asip2b (ENSSLDG00000015419)	ENSSLDG00000015428	ENSSLDG00000015453	zgc:153115 (ENSSLDG00000015493)	ENSSLDG00000015511	tsen15 (ENSSLDG00000015545)	ENSSLDG00000015562
Greater amberjack	MODERN SPECIES	83	ZBTB41 (ENSSDUG00000009223)	ENSSDUG00000009272	ENSSDUG00000009284	ahsg2 (ENSSDUG00000009306)	ENSSDUG00000009346	pfn2a (ENSSDUG00000009376)	ENSSDUG00000009587	ENSSDUG00000009615	cpdp (ENSSDUG00000009658)	NMUR1 (ENSSDUG00000009711)	ephb3a (ENSSDUG00000009729)	ENSSDUG00000009808	KCNMB3 (ENSSDUG00000009843)	PIK3CA (ENSSDUG00000009873)	kcnmb2 (ENSSDUG00000009973)	tbl1xr1b (ENSSDUG00000009994) ##22	b3gnt5b (ENSSDUG00000010092)	eif4a2 (ENSSDUG00000010103)	dcun1d1 (ENSSDUG00000010189)	ENSSDUG00000010209	ENSSDUG00000010232	ENSSDUG00000010261	ripk2 (ENSSDUG00000010407)	asip2b (ENSSDUG00000010435)	ENSSDUG00000010451	ENSSDUG00000010482	zgc:153115 (ENSSDUG00000010498)	ENSSDUG00000010507	tsen15 (ENSSDUG00000010553)	ENSSDUG00000010562	sec22ba (ENSSDUG00000010583)
Barramundi perch	MODERN SPECIES	69	ZBTB41 (ENSLCAG00010024438)	ENSLCAG00010024432	ENSLCAG00010024430	ahsg2 (ENSLCAG00010024425)	ENSLCAG00010024422	pfn2a (ENSLCAG00010024413)	ENSLCAG00010024411	ENSLCAG00010024408	cpdp (ENSLCAG00010024402)	NMUR1 (ENSLCAG00010024398)	ephb3a (ENSLCAG00010024377)	ENSLCAG00010024363	KCNMB3 (ENSLCAG00010024352)	PIK3CA (ENSLCAG00010024337)	kcnmb2 (ENSLCAG00010024327)	tbl1xr1b (ENSLCAG00010024282) ##22	b3gnt5b (ENSLCAG00010024240)	eif4a2 (ENSLCAG00010024121)	SETD9 (ENSLCAG00010024049)	dcun1d1 (ENSLCAG00010024021)	ENSLCAG00010023996	ENSLCAG00010023982	ENSLCAG00010023979	ripk2 (ENSLCAG00010023977)	ENSLCAG00010023974	asip2b (ENSLCAG00010023971)	ENSLCAG00010023959	zgc:153115 (ENSLCAG00010023951)	ENSLCAG00010023944	tsen15 (ENSLCAG00010023932)	ENSLCAG00010023930
Protacanthopterygii	ANCESTRAL SPECIES	38	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b.a	ENSGT00940000160465.k.b	ENSGT00940000159144.C	ENSGT00390000012807	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT01100000263476.E.b.a.a.a.a.a.b.h.a.b	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00940000154552	ENSGT00390000015010	ENSGT00940000164654
Northern pike	MODERN SPECIES	2	ENSELUG00000024587	ENSELUG00000024547	ENSELUG00000024515	ENSELUG00000026984	pfn2a (ENSELUG00000024493)	TSC22D2 (ENSELUG00000001032)	ENSELUG00000024402	cpdp (ENSELUG00000024336)	NMUR1 (ENSELUG00000024318)	ephb3a (ENSELUG00000024282)	ENSELUG00000024222	ENSELUG00000001016	KCNMB3 (ENSELUG00000024098)	PIK3CA (ENSELUG00000024070)	kcnmb2 (ENSELUG00000024042)	tbl1xr1b (ENSELUG00000024028) ##22	b3gnt5b (ENSELUG00000023926)	eif4a2 (ENSELUG00000023923)	dcun1d1 (ENSELUG00000023829)	CCDC39 (ENSELUG00000023736)	ENSELUG00000023612	ENSELUG00000033406	ENSELUG00000033091	ENSELUG00000029515	ENSELUG00000023558	ripk2 (ENSELUG00000023504)	ENSELUG00000023458	ENSELUG00000023436	ENSELUG00000023428	zgc:153115 (ENSELUG00000023419)	ENSELUG00000023413
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	352	ENSGT00940000154386.c	ENSGT00550000075080	ENSGT00940000155152.f.a.c	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b.b.b.a	ENSGT00940000160465.k.b.a	ENSGT00940000159144.C.ab.b	ENSGT00390000012807.ac	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a.b	ENSGT00940000158024.B.c	ENSGT00940000155531.a.b.a.b	ENSGT00950000183039.B.b.d.b	ENSGT00940000153421.a.a.a.a.a.g.a ##22
Huchen	MODERN SPECIES	804	ENSHHUG00000043786	ENSHHUG00000043802	ZBTB41 (ENSHHUG00000043816)	CRB1 (ENSHHUG00000043820)	ENSHHUG00000043836	ahsg2 (ENSHHUG00000043842)	ENSHHUG00000043853	pfn2a (ENSHHUG00000043856)	ENSHHUG00000043874	ENSHHUG00000043881	cpdp (ENSHHUG00000043890)	NMUR1 (ENSHHUG00000043916)	ephb3a (ENSHHUG00000043926)	PIK3CA (ENSHHUG00000043936)	kcnmb2 (ENSHHUG00000043947)	tbl1xr1b (ENSHHUG00000043953) ##22
Salmoninae_a	ANCESTRAL SPECIES	6	ENSGT00550000075080	ENSGT00940000155152.f.a.c	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b.b.b.a	ENSGT00940000160465.k.b.a	ENSGT00940000159144.C.ab.b	ENSGT00390000012807.ac	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a.b	ENSGT00940000158024.B.c	ENSGT00940000155531.a.b.a.b	ENSGT00950000183039.B.b.d.b	ENSGT01100000265177	ENSGT00940000153421.a.a.a.a.a.g.a ##22	ENSGT00940000159676.b.c	ENSGT00940000154552.f	ENSGT00390000015010	ENSGT00940000156113.t.a	ENSGT00390000005651.n	ENSGT00730000112562.e.a	ENSGT01010000229298	ENSGT00940000164815.a.g	ENSGT01030000234558.C.o	ENSGT00390000014781	ENSGT00940000179497	ENSGT00940000156349.d.e	ENSGT00950000182827.C.a.b	ENSGT00390000018059.b.b.e	ENSGT00940000163540.i.b
Oncorhynchus	ANCESTRAL SPECIES	15	ENSGT00940000154967.a.b.a.b.a	ENSGT00550000075080	ENSGT00940000155152.f.a.c	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b.b.b.a.b	ENSGT00940000160465.k.b.a	ENSGT00390000012807.ac	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a.b	ENSGT00940000158024.B.c	ENSGT00940000155531.a.b.a.b	ENSGT00950000183039.B.b.d.b	ENSGT01100000265177	ENSGT00940000153421.a.a.a.a.a.g.a ##22	ENSGT00940000159676.b.c	ENSGT00940000154552.f	ENSGT00390000015010	ENSGT00940000156113.t.a	ENSGT00390000005651.n	ENSGT00730000112562.e.a	ENSGT01010000229298	ENSGT00940000164815.a.g	ENSGT01030000234558.C.o	ENSGT00390000014781	ENSGT00390000014594.e.b.d	ENSGT00940000179497	ENSGT00940000156349.d.e	ENSGT00950000182827.C.a.b	ENSGT00390000018059.b.b.e
Oncorhynchus_a	ANCESTRAL SPECIES	57	ENSGT00940000155117.f.b.f	ENSGT00550000075080	ENSGT00940000155152.f.a.c	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b.b.b.a.b	ENSGT00940000160465.k.b.a	ENSGT00390000012807.ac	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a.b	ENSGT00940000158024.B.c	ENSGT00940000155531.a.b.a.b	ENSGT00950000183039.B.b.d.b	ENSGT01100000265177	ENSGT00940000153421.a.a.a.a.a.g.a ##22	ENSGT00940000159676.b.c	ENSGT00940000154552.f	ENSGT00390000015010	ENSGT00940000156113.t.a	ENSGT00390000005651.n	ENSGT00730000112562.e.a	ENSGT01010000229298	ENSGT00940000164815.a.g	ENSGT01030000234558.C.o	ENSGT00390000014781	ENSGT00940000179497	ENSGT00940000156349.d.e	ENSGT00950000182827.C.a.b	ENSGT00390000018059.b.b.e	ENSGT00940000163540.i.b
Coho salmon	MODERN SPECIES	19	RGS1 (ENSOKIG00005032617)	rgs13 (ENSOKIG00005032608)	RGS2 (ENSOKIG00005032590)	ro60 (ENSOKIG00005032575)	ENSOKIG00005032569	cdc73 (ENSOKIG00005032455)	TSC22D2 (ENSOKIG00005032423)	ENSOKIG00005032410	cpdp (ENSOKIG00005032306)	NMUR1 (ENSOKIG00005032288)	EPHB3 (ENSOKIG00005032210)	PIK3CA (ENSOKIG00005032168)	ENSOKIG00005032155	kcnmb2 (ENSOKIG00005032149)	ENSOKIG00005032128	tbl1xr1b (ENSOKIG00005031956) ##22	b3gnt5b (ENSOKIG00005031928)	dcun1d1 (ENSOKIG00005029657)	CCDC39 (ENSOKIG00005029308)	RIPK2 (ENSOKIG00005029167)	ENSOKIG00005029152	asip2b (ENSOKIG00005029141)	ENSOKIG00005029071	zgc:153115 (ENSOKIG00005029042)	ENSOKIG00005028827	tsen15 (ENSOKIG00005028816)	ENSOKIG00005028807	sec22ba (ENSOKIG00005028759)	slc35a3b (ENSOKIG00005028707)	ENSOKIG00005028692	CMPK1 (ENSOKIG00005028606)
Chinook salmon	MODERN SPECIES	20	ro60 (ENSOTSG00005042842)	ENSOTSG00005042841	cdc73 (ENSOTSG00005042557)	ENSOTSG00005042547	ENSOTSG00005042541	ENSOTSG00005042540	ENSOTSG00005042539	ENSOTSG00005042538	pfn2a (ENSOTSG00005042536)	ENSOTSG00005042534	ENSOTSG00005042533	cpdp (ENSOTSG00005042531)	NMUR1 (ENSOTSG00005042529)	PIK3CA (ENSOTSG00005042522)	kcnmb2 (ENSOTSG00005042518)	tbl1xr1b (ENSOTSG00005042458) ##22	b3gnt5b (ENSOTSG00005042455)	dcun1d1 (ENSOTSG00005042424)	CCDC39 (ENSOTSG00005042344)	RIPK2 (ENSOTSG00005042339)	ENSOTSG00005042338	ENSOTSG00005042337	zgc:153115 (ENSOTSG00005042336)	ENSOTSG00005041866	tsen15 (ENSOTSG00005041864)	tsen15 (ENSOTSG00005041863)	ENSOTSG00005041861	sec22ba (ENSOTSG00005041860)	slc35a3b (ENSOTSG00005041855)	ENSOTSG00005041852	cmpk (ENSOTSG00005041843)
Rainbow trout	MODERN SPECIES	20	ENSOMYG00000025584	ENSOMYG00000025466	ENSOMYG00000025445	ENSOMYG00000025414	ENSOMYG00000025396	ENSOMYG00000025364	ENSOMYG00000025336	ENSOMYG00000051705	ENSOMYG00000025294	ENSOMYG00000025261	ENSOMYG00000025230	ENSOMYG00000048306	ENSOMYG00000045596	kcnmb2 (ENSOMYG00000045587)	ENSOMYG00000067826	tbl1xr1b (ENSOMYG00000045543) ##22	b3gnt5b (ENSOMYG00000045526)	dcnl1 (ENSOMYG00000045467)	ENSOMYG00000045438	ENSOMYG00000045431	ENSOMYG00000045429	ENSOMYG00000060543	asip2b (ENSOMYG00000066626)	ENSOMYG00000045424	ENSOMYG00000051358	zgc:153115 (ENSOMYG00000045421)	ENSOMYG00000045419	tsen15 (ENSOMYG00000045415)	zgc:55943 (ENSOMYG00000045413)	sec22ba (ENSOMYG00000045406)	slc35a3b (ENSOMYG00000045395)
Salmo	ANCESTRAL SPECIES	5	ENSGT00940000154386.c	ENSGT00550000075080	ENSGT00940000155152.f.a.c	ENSGT00940000156309.A.k	ENSGT00950000182930.C.e	ENSGT00940000173998	ENSGT00940000153664.B.q.b.b.b.b.a	ENSGT00940000159144.C.ab.b	ENSGT00390000012807.ac	ENSGT00390000010302	ENSGT01100000263484.A.c.a.a.a.b	ENSGT00940000158024.B.c	ENSGT00940000155531.a.b.a.b	ENSGT00950000183039.B.b.d.b	ENSGT01100000265177	ENSGT00940000153421.a.a.a.a.a.g.a ##22	ENSGT00940000159676.b.c	ENSGT00940000154552.f	ENSGT00390000015010	ENSGT00940000156113.t.a	ENSGT00390000005651.n	ENSGT00730000112562.e.a	ENSGT01010000229298	ENSGT00940000164815.a.g	ENSGT01030000234558.C.o	ENSGT00390000014781	ENSGT00940000179497	ENSGT00940000156349.d.e	ENSGT00950000182827.C.a.b	ENSGT00390000018059.b.b.e	ENSGT00940000163540.i.b
River trout	MODERN SPECIES	24	ENSSTUG00000038538	ZBTB41 (ENSSTUG00000038510)	ENSSTUG00000038496	ENSSTUG00000038478	ahsg2 (ENSSTUG00000038464)	ENSSTUG00000038448	pfn2a (ENSSTUG00000038436)	ENSSTUG00000038423	ENSSTUG00000038403	cpdp (ENSSTUG00000038336)	NMUR1 (ENSSTUG00000038322)	ephb3a (ENSSTUG00000038262)	PIK3CA (ENSSTUG00000038203)	kcnmb2 (ENSSTUG00000038162)	ENSSTUG00000038137	tbl1xr1b (ENSSTUG00000038073) ##22	b3gnt5b (ENSSTUG00000038060)	dcun1d1 (ENSSTUG00000037925)	CCDC39 (ENSSTUG00000037729)	RIPK2 (ENSSTUG00000037672)	ENSSTUG00000037667	asip2b (ENSSTUG00000037657)	zgc:153115 (ENSSTUG00000037650)	ENSSTUG00000037351	tsen15 (ENSSTUG00000037335)	ENSSTUG00000037330	sec22ba (ENSSTUG00000037309)	slc35a3b (ENSSTUG00000037272)	FAM78B (ENSSTUG00000037265)	cmpk (ENSSTUG00000037249)	bcl6ab (ENSSTUG00000037231)
Atlantic salmon	MODERN SPECIES	22	ENSSSAG00000050207	ENSSSAG00000082304	zbtb41 (ENSSSAG00000050242)	ENSSSAG00000050265	ENSSSAG00000111110	ENSSSAG00000083260	ENSSSAG00000050335	ENSSSAG00000099998	ENSSSAG00000050312	fytd1 (ENSSSAG00000050355)	ENSSSAG00000050425	ENSSSAG00000116805	ENSSSAG00000050922	ENSSSAG00000068095	kcnmb2 (ENSSSAG00000051083)	tbl1xr1b (ENSSSAG00000051184) ##22	b3gnt5 (ENSSSAG00000100601)	dcun1d1 (ENSSSAG00000051316)	ccdc39 (ENSSSAG00000051402)	ENSSSAG00000051445	ENSSSAG00000051484	asip2b (ENSSSAG00000051492)	ENSSSAG00000051499	zgc:153115 (ENSSSAG00000092819)	ENSSSAG00000051549	zgc:55943 (ENSSSAG00000118762)	tsen15 (ENSSSAG00000096987)	sec22ba (ENSSSAG00000100666)	slc35a3b (ENSSSAG00000037372)	ENSSSAG00000106370	cmpk (ENSSSAG00000037637)
Salmoninae	ANCESTRAL SPECIES	153	ENSGT00390000001114.i	ENSGT00940000155117.f.b.e	ENSGT00940000158746.k.b	ENSGT00940000155152.f.a.d	ENSGT00940000153664.B.q.b.b.b.b.b	ENSGT00940000160465.k.b.b	ENSGT00390000012807.`c	ENSGT01100000263484.A.c.a.a.a.a	ENSGT00940000158024.B.d	ENSGT00940000167389	ENSGT00940000164898.j	ENSGT01100000263476.E.b.a.a.a.a.a.b.h.a.b	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b.a.a	ENSGT00950000183039.B.b.d.a	ENSGT00940000153421.a.a.a.a.a.g.b ##22	ENSGT00940000159676.b.d	ENSGT00940000153783.b.b.d	ENSGT00940000154552.e	ENSGT00940000164654	ENSGT00940000156113.t.b	ENSGT00730000112562.e.b	ENSGT00390000002200.a.b	ENSGT00440000038757	ENSGT00940000164815.a.h	ENSGT00940000164993.g	ENSGT00990000212612	ENSGT00390000014594.e.b.c	ENSGT00940000156349.d.f	ENSGT00550000075090	ENSGT00950000182827.C.a.a
Salmoninae_a	ANCESTRAL SPECIES	2	ENSGT00390000001114.i	ENSGT00940000155117.f.b.e	ENSGT00940000158746.k.b	ENSGT00940000155152.f.a.d	ENSGT00940000153664.B.q.b.b.b.b.b	ENSGT00940000160465.k.b.b	ENSGT00390000012807.`c	ENSGT01100000263484.A.c.a.a.a.a	ENSGT00940000158024.B.d	ENSGT00940000167389	ENSGT00940000164898.j	ENSGT01100000263476.E.b.a.a.a.a.a.b.h.a.b	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b.a.a	ENSGT00950000183039.B.b.d.a	ENSGT00940000153421.a.a.a.a.a.g.b ##22	ENSGT01010000229530	ENSGT00940000163587.a.b.a.d.a	ENSGT00940000159676.b.d	ENSGT00940000153783.b.b.d	ENSGT00940000154552.e	ENSGT00940000164654	ENSGT00940000156113.t.b	ENSGT00730000112562.e.b	ENSGT00390000002200.a.b	ENSGT00440000038757	ENSGT00940000164815.a.h	ENSGT00940000164993.g	ENSGT00990000212612	ENSGT00390000014594.e.b.c	ENSGT00940000156349.d.f
Salmo	ANCESTRAL SPECIES	35	ENSGT00390000001114.i	ENSGT00940000155117.f.b.e	ENSGT00940000158746.k.b	ENSGT00940000155152.f.a.d	ENSGT00940000153664.B.q.b.b.b.b.b	ENSGT00940000160465.k.b.b	ENSGT00390000012807.`c	ENSGT01100000263484.A.c.a.a.a.a	ENSGT00940000158024.B.d	ENSGT00940000167389	ENSGT00940000164898.j	ENSGT01100000263476.E.b.a.a.a.a.a.b.h.a.b	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b.a.a	ENSGT00950000183039.B.b.d.a	ENSGT00940000153421.a.a.a.a.a.g.b ##22	ENSGT01010000229530	ENSGT00940000163587.a.b.a.d.a	ENSGT00940000159676.b.d	ENSGT00940000153783.b.b.d	ENSGT00940000154552.e	ENSGT00940000164654	ENSGT00940000156113.t.b	ENSGT00730000112562.e.b	ENSGT00390000002200.a.b	ENSGT00940000164815.a.h	ENSGT00990000212612	ENSGT00390000014594.e.b.c	ENSGT00940000156349.d.f	ENSGT00550000075090	ENSGT00950000182827.C.a.a
River trout	MODERN SPECIES	13	ENSSTUG00000048120	ENSSTUG00000049069	pfn2a (ENSSTUG00000049077)	ENSSTUG00000049083	ENSSTUG00000049090	NMUR1 (ENSSTUG00000049093)	ephb3a (ENSSTUG00000049099)	ENSSTUG00000049121	ENSSTUG00000049143	ENSSTUG00000049147	ENSSTUG00000049148	ENSSTUG00000049154	KCNMB3 (ENSSTUG00000049156)	PIK3CA (ENSSTUG00000049171)	kcnmb2 (ENSSTUG00000049194)	tbl1xr1b (ENSSTUG00000049209) ##22	ENSSTUG00000049258	b3gnt5b (ENSSTUG00000049265)	eif4a2 (ENSSTUG00000049281)	dcun1d1 (ENSSTUG00000049440)	ENSSTUG00000049447	ENSSTUG00000049493	asip2b (ENSSTUG00000034837)	ENSSTUG00000034845	zgc:153115 (ENSSTUG00000034889)	ENSSTUG00000034898	zgc:55943 (ENSSTUG00000034909)	sec22ba (ENSSTUG00000034920)	imp3 (ENSSTUG00000034941)	slc35a3b (ENSSTUG00000034960)	FAM78B (ENSSTUG00000035030)
Atlantic salmon	MODERN SPECIES	5	ENSSSAG00000066495	ENSSSAG00000094631	ENSSSAG00000067543	PROF2 (ENSSSAG00000067552)	ENSSSAG00000067554	ENSSSAG00000067558	ENSSSAG00000101545	ENSSSAG00000067577	ENSSSAG00000067564	ENSSSAG00000113034	ENSSSAG00000068089	ENSSSAG00000111643	KCNMB3 (ENSSSAG00000068092)	PIK3CA (ENSSSAG00000050992)	kcnmb2 (ENSSSAG00000087350)	tbl1xr1b (ENSSSAG00000068182) ##22	ENSSSAG00000101365	ENSSSAG00000085676	b3gnt5b (ENSSSAG00000089358)	eif4a2 (ENSSSAG00000099057)	dcun1d1 (ENSSSAG00000114514)	ENSSSAG00000069967	ENSSSAG00000070768	ENSSSAG00000070776	ENSSSAG00000114117	ENSSSAG00000121284	zgc:55943 (ENSSSAG00000103848)	sec22ba (ENSSSAG00000094856)	imp3 (ENSSSAG00000070890)	slc35a3b (ENSSSAG00000070836)	ENSSSAG00000089666
Oncorhynchus	ANCESTRAL SPECIES	11	ENSGT00390000001114.i	ENSGT00940000155117.f.b.e	ENSGT00940000158746.k.b	ENSGT00940000155152.f.a.d	ENSGT00940000153664.B.q.b.b.b.b.b	ENSGT00940000160465.k.b.b	ENSGT00390000012807.`c	ENSGT01100000263484.A.c.a.a.a.a	ENSGT00940000158024.B.d	ENSGT00940000167389	ENSGT00940000164898.j	ENSGT01100000263476.E.b.a.a.a.a.a.b.h.a.b	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b.a.a	ENSGT00950000183039.B.b.d.a	ENSGT00940000153421.a.a.a.a.a.g.b ##22	ENSGT01010000229530	ENSGT00940000163587.a.b.a.d.a	ENSGT00940000159676.b.d	ENSGT00940000153783.b.b.d	ENSGT00940000154552.e	ENSGT00940000164654	ENSGT00940000156113.t.b	ENSGT00730000112562.e.b	ENSGT00390000002200.a.b	ENSGT00440000038757	ENSGT00940000164815.a.h	ENSGT00940000164993.g	ENSGT00940000156349.d.f	ENSGT00550000075090	ENSGT00950000182827.C.a.a
Oncorhynchus_a	ANCESTRAL SPECIES	37	ENSGT00390000001114.i	ENSGT00940000155117.f.b.e	ENSGT00940000158746.k.b	ENSGT00940000155152.f.a.d	ENSGT00940000153664.B.q.b.b.b.b.b	ENSGT00940000160465.k.b.b	ENSGT00390000012807.`c	ENSGT01100000263484.A.c.a.a.a.a	ENSGT00940000158024.B.d	ENSGT00940000167389	ENSGT00940000164898.j	ENSGT01100000263476.E.b.a.a.a.a.a.b.h.a.b	ENSGT00950000183039.B.a	ENSGT00940000155531.a.b.a.a	ENSGT00950000183039.B.b.d.a	ENSGT00940000153421.a.a.a.a.a.g.b ##22	ENSGT01010000229530	ENSGT00940000163587.a.b.a.d.a	ENSGT00940000159676.b.d	ENSGT00940000153783.b.b.d	ENSGT00940000154552.e	ENSGT00940000164654	ENSGT00940000156113.t.b	ENSGT00730000112562.e.b	ENSGT00390000002200.a.b	ENSGT00440000038757	ENSGT00940000164815.a.h	ENSGT00940000164993.g	ENSGT00940000156349.d.f	ENSGT00550000075090	ENSGT00950000182827.C.a.a
Coho salmon	MODERN SPECIES	23	ENSOKIG00005022020	ENSOKIG00005022028	ENSOKIG00005022129	ENSOKIG00005023542	pfn2a (ENSOKIG00005023561)	TSC22D2 (ENSOKIG00005023577)	ENSOKIG00005023584	NMUR1 (ENSOKIG00005023601)	ephb3a (ENSOKIG00005023615)	ENSOKIG00005023660	ENSOKIG00005023730	ENSOKIG00005023740	KCNMB3 (ENSOKIG00005023752)	PIK3CA (ENSOKIG00005023809)	kcnmb2 (ENSOKIG00005023947)	tbl1xr1b (ENSOKIG00005023995) ##22	ENSOKIG00005024173	ENSOKIG00005024195	b3gnt5b (ENSOKIG00005024206)	eif4a2 (ENSOKIG00005024249)	dcun1d1 (ENSOKIG00005024828)	ENSOKIG00005024887	ENSOKIG00005024999	asip2b (ENSOKIG00005025039)	ENSOKIG00005025058	ENSOKIG00005025177	zgc:153115 (ENSOKIG00005025202)	ENSOKIG00005025222	sec22ba (ENSOKIG00005025234)	imp3 (ENSOKIG00005025262)	slc35a3b (ENSOKIG00005025335)
Chinook salmon	MODERN SPECIES	1	ENSOTSG00005004438	cdc73 (ENSOTSG00005004426)	ENSOTSG00005004218	ENSOTSG00005004186	pfn2a (ENSOTSG00005004182)	ENSOTSG00005004174	ENSOTSG00005004169	NMUR1 (ENSOTSG00005004163)	ephb3a (ENSOTSG00005004158)	ENSOTSG00005004157	ENSOTSG00005004155	ENSOTSG00005004150	KCNMB3 (ENSOTSG00005004146)	PIK3CA (ENSOTSG00005003598)	kcnmb2 (ENSOTSG00005003591)	tbl1xr1b (ENSOTSG00005003552) ##22	ENSOTSG00005003543	b3gnt5b (ENSOTSG00005003540)	eif4a2 (ENSOTSG00005001389)	dcun1d1 (ENSOTSG00005001311)	ENSOTSG00005001306	ENSOTSG00005001300	asip2b (ENSOTSG00005001299)	ATP6V0D2 (ENSOTSG00005001273)	zgc:153115 (ENSOTSG00005001253)	sec22ba (ENSOTSG00005001248)	imp3 (ENSOTSG00005001241)	slc35a3b (ENSOTSG00005001094)	FAM78B (ENSOTSG00005000811)	cmpk (ENSOTSG00005019119)	bcl6ab (ENSOTSG00005019117)
Rainbow trout	MODERN SPECIES	29	ENSOMYG00000054553	ENSOMYG00000045944	ENSOMYG00000046544	ENSOMYG00000060001	ENSOMYG00000046550	ENSOMYG00000046555	ENSOMYG00000046562	ENSOMYG00000046571	ENSOMYG00000046577	ENSOMYG00000046580	ENSOMYG00000001315	ENSOMYG00000001354	KCNMB3 (ENSOMYG00000001402)	PIK3CA (ENSOMYG00000001449)	kcnmb2 (ENSOMYG00000001485)	tbl1xr1b (ENSOMYG00000001777) ##22	ENSOMYG00000001926	ENSOMYG00000068145	b3gnt5b (ENSOMYG00000001937)	eif4a2 (ENSOMYG00000002734)	dcun1d1 (ENSOMYG00000003455)	ENSOMYG00000003662	ENSOMYG00000003763	asip2b (ENSOMYG00000056285)	ENSOMYG00000003844	ENSOMYG00000074494	ENSOMYG00000039681	zgc:153115 (ENSOMYG00000003989)	zgc:55943 (ENSOMYG00000003998)	sec22ba (ENSOMYG00000004034)	imp3 (ENSOMYG00000004096)
Huchen	MODERN SPECIES	73	ENSHHUG00000038417	pfn2a (ENSHHUG00000038355)	TSC22D2 (ENSHHUG00000038352)	ENSHHUG00000038344	NMUR1 (ENSHHUG00000038319)	ENSHHUG00000038317	ephb3a (ENSHHUG00000038221)	ENSHHUG00000038214	ENSHHUG00000038209	ENSHHUG00000038206	ENSHHUG00000038195	ENSHHUG00000038188	KCNMB3 (ENSHHUG00000038158)	PIK3CA (ENSHHUG00000038121)	kcnmb2 (ENSHHUG00000038115)	tbl1xr1b (ENSHHUG00000038078) ##22	ENSHHUG00000038056	b3gnt5b (ENSHHUG00000038050)	eif4a2 (ENSHHUG00000037529)	dcun1d1 (ENSHHUG00000037493)	ENSHHUG00000037490	ENSHHUG00000037446	ENSHHUG00000037437	asip2b (ENSHHUG00000037432)	ENSHHUG00000037329	zgc:153115 (ENSHHUG00000037327)	ENSHHUG00000037320	zgc:55943 (ENSHHUG00000037314)	sec22ba (ENSHHUG00000037305)	imp3 (ENSHHUG00000037300)	slc35a3b (ENSHHUG00000037282)
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000153421.a.a.a.a.a.h ##22
Huchen	MODERN SPECIES	4172																ENSHHUG00000038076 ##22	ENSHHUG00000038073	b3gnt5b (ENSHHUG00000038069)	eif4a2 (ENSHHUG00000038040)	dcun1d1 (ENSHHUG00000037904)	ENSHHUG00000037882
Otomorpha	ANCESTRAL SPECIES	355											ENSGT00950000183097.a.b ##18	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d	ENSGT00940000154552	ENSGT00390000015010	ENSGT01100000264057	ENSGT00940000164654	ENSGT00940000156113	ENSGT00390000005651.n	ENSGT00730000112562	ENSGT00440000038757	ENSGT00940000164815.a	ENSGT01030000234558.C.o
Clupeiformes	ANCESTRAL SPECIES	365											ENSGT00950000183097.a.b ##18	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000154552	ENSGT00390000015010	ENSGT01100000264057	ENSGT00940000164654	ENSGT00940000156113	ENSGT00390000005651.n	ENSGT00730000112562
Atlantic herring	MODERN SPECIES	14	ST6GALNAC5 (ENSCHAG00000014093)	st6galnac3 (ENSCHAG00000014108)	CERS1 (ENSCHAG00000014120)	cope (ENSCHAG00000014158)	ENSCHAG00000014349	ENSCHAG00000014379	ENSCHAG00000014420	dipk2aa (ENSCHAG00000014605)	chst2a (ENSCHAG00000014628)	pls1 (ENSCHAG00000014673) ##18	PCOLCE2 (ENSCHAG00000015418)	ephb3a (ENSCHAG00000015493)	ENSCHAG00000016332	ENSCHAG00000016459	kcnmb2 (ENSCHAG00000016553)	tbl1xr1b (ENSCHAG00000016664) ##22	zgc:153115 (ENSCHAG00000016814)	ENSCHAG00000016829	ENSCHAG00000017185	ENSCHAG00000017208	ENSCHAG00000017240	ripk2 (ENSCHAG00000017370)	SNX16 (ENSCHAG00000017445)	asip2b (ENSCHAG00000017453)	ENSCHAG00000017461	zgc:101744 (ENSCHAG00000017482)	slc1a8b (ENSCHAG00000017511)	ELAVL1 (ENSCHAG00000017982)	pex19 (ENSCHAG00000018084)	copa (ENSCHAG00000018139)	apoda.1 (ENSCHAG00000018404)
Otophysi	ANCESTRAL SPECIES	129	ENSGT00940000159735	ENSGT00940000157634.d	ENSGT00940000156273	ENSGT00940000155917	ENSGT00390000005307	ENSGT00940000157311	ENSGT00390000008565.b	ENSGT00940000160043	ENSGT00940000165699.A.a.b	ENSGT00940000165699.A.a.a	ENSGT00950000183097.a.b ##18	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d.q	ENSGT00940000154552	ENSGT00390000015010	ENSGT01100000264057	ENSGT00940000164654	ENSGT00940000156113	ENSGT00390000005651.n	ENSGT00730000112562	ENSGT00440000038757	ENSGT00940000164815.a	ENSGT01030000234558.C.o	ENSGT00390000013003.e.b	ENSGT00940000157143.c.b	ENSGT00940000164809
Cyprinoidei	ANCESTRAL SPECIES	61	ENSGT00940000157634.d	ENSGT00940000156273	ENSGT00940000155917	ENSGT00390000005307	ENSGT00940000157311	ENSGT00390000008565.b	ENSGT00940000160043	ENSGT00940000165351.i.a	ENSGT00940000165699.A.a.b	ENSGT00940000165699.A.a.a	ENSGT00950000183097.a.b ##18	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d.q	ENSGT00940000154552	ENSGT00390000015010
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	118	ENSGT00940000157634.d.d	ENSGT00940000156273.w	ENSGT00940000155917.db.b	ENSGT00390000005307.r	ENSGT00940000157311.l	ENSGT00390000008565.b.n	ENSGT00940000156051.d	ENSGT00520000055625.b.k.b	ENSGT00940000161292.v.b	ENSGT00950000183097.a.b.a ##18	ENSGT00940000157649.j.a	ENSGT00940000158024.B.a	ENSGT00940000167389.b	ENSGT00950000183039.B.a.c.a	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a.i ##22	ENSGT00940000159676.b.a	ENSGT00940000153783.b.b.d.q.a	ENSGT00940000154552.c	ENSGT00390000015010.b	ENSGT01100000264057	ENSGT00940000164654.b	ENSGT00940000164654.a.a	ENSGT00940000156113.j.a	ENSGT00730000112562.h	ENSGT00440000038757	ENSGT00940000164815.a.c	ENSGT00940000157143.c.b.b	ENSGT00940000164809.j	ENSGT00940000167735.b.b	ENSGT00940000155899.e.b.b
Cyprininae_a	ANCESTRAL SPECIES	152	ENSGT00940000157634.d.d	ENSGT00940000156273.w	ENSGT00940000155917.db.b	ENSGT00390000005307.r	ENSGT00940000157311.l	ENSGT00390000008565.b.n	ENSGT00940000160043.a	ENSGT00520000055625.b.k.b	ENSGT00940000161292.v.b	ENSGT00950000183097.a.b.a ##18	ENSGT00940000157649.j.a	ENSGT00940000158024.B.a	ENSGT00940000167389.b	ENSGT00950000183039.B.a.c.a	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a.i ##22	ENSGT00940000159676.b.a	ENSGT00940000153783.b.b.d.q.a	ENSGT00940000154552.c	ENSGT00390000015010.b	ENSGT01100000264057	ENSGT00940000164654.b	ENSGT00940000164654.a.a	ENSGT00940000156113.j.a	ENSGT00730000112562.h	ENSGT00440000038757	ENSGT00940000164815.a.c	ENSGT00940000157143.c.b.b	ENSGT00940000164809.j	ENSGT00940000167735.b.b	ENSGT00940000155899.e.b.b
Common carp reference	MODERN SPECIES	21	ENSCCRG00000075732	si:ch211-71m22.3 (ENSCCRG00000018664)	ENSCCRG00000069951	si:ch211-71m22.1 (ENSCCRG00000062185)	ENSCCRG00000072571	ENSCCRG00000075509	dipk2aa (ENSCCRG00000033077)	ENSCCRG00000053106	pls1 (ENSCCRG00000066051) ##18	chst2a (ENSCCRG00000011513)	ENSCCRG00000079842	ephb3a (ENSCCRG00000052312)	ENSCCRG00000037278	ENSCCRG00000060539	kcnmb2 (ENSCCRG00000035470)	tbl1xr1b (ENSCCRG00000035465) ##22	b3gnt5b (ENSCCRG00000076730)	eif4a2 (ENSCCRG00000051386)	dcun1d1 (ENSCCRG00000054791)	ENSCCRG00000074634	ENSCCRG00000051393	ENSCCRG00000060593	ENSCCRG00000025210	ENSCCRG00000054174	asip2b (ENSCCRG00000064488)	ENSCCRG00000056911	zgc:153115 (ENSCCRG00000053837)	ENSCCRG00000036926	ENSCCRG00000052845	ENSCCRG00000066569	ENSCCRG00000082309
Golden-line barbel	MODERN SPECIES	1261															kcnmb2 (ENSSGRG00000029669)	tbl1xr1b (ENSSGRG00000028513) ##22	b3gnt5b (ENSSGRG00000028487)	eif4a2 (ENSSGRG00000027901)	dcun1d1 (ENSSGRG00000027880)	ENSSGRG00000027879	ENSSGRG00000027875	ENSSGRG00000027870	RIPK2 (ENSSGRG00000027866)	asip2b (ENSSGRG00000027863)	ENSSGRG00000027860
Goldfish	MODERN SPECIES	11	ENSCARG00000053511	PCSK6 (ENSCARG00000053537)	miga1 (ENSCARG00000053666)	fubp1 (ENSCARG00000054812)	ENSCARG00000058680	ENSCARG00000058692	si:ch211-71m22.1 (ENSCARG00000058723)	ENSCARG00000058847	dipk2aa (ENSCARG00000058945)	chst2a (ENSCARG00000058965)	pls1 (ENSCARG00000059014) ##18	ephb3a (ENSCARG00000059411)	ENSCARG00000059656	ENSCARG00000059681	kcnmb2 (ENSCARG00000059706)	tbl1xr1b (ENSCARG00000059737) ##22	b3gnt5b (ENSCARG00000059905)	eif4a2 (ENSCARG00000060099)	dcun1d1 (ENSCARG00000062356)	CCDC39 (ENSCARG00000062443)	ENSCARG00000062979	ENSCARG00000063016	RIPK2 (ENSCARG00000063104)	asip2b (ENSCARG00000063281)	ENSCARG00000063306	zgc:153115 (ENSCARG00000063320)	RC3H1 (ENSCARG00000063362)	ENSCARG00000063481	ENSCARG00000063497	DBT (ENSCARG00000063618)	XPR1 (ENSCARG00000063667)
Cyprininae	ANCESTRAL SPECIES	67	ENSGT00940000155917.db.a	ENSGT00390000005307.q	ENSGT00940000157311.k	ENSGT00390000008565.b.m	ENSGT00940000160043.b	ENSGT00940000165351.i.a.a	ENSGT00940000165699.A.a.b	ENSGT00940000165699.A.a.a.a.a.b	ENSGT00520000055625.b.k.a	ENSGT00940000161292.v.a	ENSGT00950000183097.a.b.b ##18	ENSGT00940000157649.j.b	ENSGT00940000158024.B.b	ENSGT00940000167389.a	ENSGT00950000183039.B.a.c.b	ENSGT00940000153421.a.a.a.a.a.j ##22	ENSGT00940000159676.b.b	ENSGT00940000153783.b.b.d.q.b	ENSGT00940000154552.d	ENSGT00390000015010.a.b	ENSGT00940000164654.a.b	ENSGT00940000156113.j.b	ENSGT00390000005651.n	ENSGT00940000164815.a.d	ENSGT01030000234558.C.o	ENSGT00390000013003.e.b	ENSGT00940000157143.c.b.a	ENSGT00940000164809.i	ENSGT00940000158820	ENSGT00940000167735.b.a	ENSGT00940000155899.e.b.a
Goldfish	MODERN SPECIES	19	ENSCARG00000024224	zzz3 (ENSCARG00000024229)	usp33 (ENSCARG00000024502)	ENSCARG00000030577	fubp1 (ENSCARG00000030655)	si:ch211-71m22.3 (ENSCARG00000031946)	ENSCARG00000031963	si:ch211-71m22.1 (ENSCARG00000032104)	dipk2aa (ENSCARG00000032113)	chst2a (ENSCARG00000032131)	pls1 (ENSCARG00000032159) ##18	PCOLCE2 (ENSCARG00000032417)	ephb3a (ENSCARG00000032537)	ENSCARG00000032681	ENSCARG00000032714	tbl1xr1b (ENSCARG00000032749) ##22	b3gnt5b (ENSCARG00000032906)	eif4a2 (ENSCARG00000032997)	dcun1d1 (ENSCARG00000033494)	CCDC39 (ENSCARG00000033545)	ENSCARG00000033632	ENSCARG00000033648	ENSCARG00000033656	RIPK2 (ENSCARG00000033668)	ENSCARG00000033709	ENSCARG00000033733	zgc:153115 (ENSCARG00000033761)	ENSCARG00000033792	ENSCARG00000033851	RC3H1 (ENSCARG00000033869)	zgc:110366 (ENSCARG00000033919)
Cyprininae_a	ANCESTRAL SPECIES	88	ENSGT00390000005307.q	ENSGT00940000157311.k	ENSGT00390000008565.b.m	ENSGT00940000160043.b	ENSGT00940000165351.i.a.a	ENSGT00940000165699.A.a.b	ENSGT00940000165699.A.a.a.a.b	ENSGT00940000165699.A.a.a.a.a.b	ENSGT00520000055625.b.k.a	ENSGT00940000161292.v.a	ENSGT00950000183097.a.b.b ##18	ENSGT00940000157649.j.b	ENSGT00940000158024.B.b	ENSGT00940000167389.a	ENSGT00950000183039.B.a.d	ENSGT00940000153421.a.a.a.a.a.j ##22	ENSGT00940000159676.b.b	ENSGT00940000153783.b.b.d.q.b	ENSGT00940000154552.d	ENSGT00390000015010.a.b	ENSGT00940000164654.a.b	ENSGT00940000156113.j.b	ENSGT00390000005651.n	ENSGT00730000112562.g	ENSGT00940000164815.a.d	ENSGT01030000234558.C.o	ENSGT00390000013003.e.b	ENSGT00940000157143.c.b.a	ENSGT00940000164809.i	ENSGT00940000158820	ENSGT00940000167735.b.a
Common carp reference	MODERN SPECIES	29	ak5 (ENSCCRG00000064568)	zzz3 (ENSCCRG00000066327)	usp33 (ENSCCRG00000010830)	miga1 (ENSCCRG00000010729)	ENSCCRG00000010704	si:ch211-71m22.3 (ENSCCRG00000065862)	ENSCCRG00000064118	si:ch211-71m22.1 (ENSCCRG00000058278)	ENSCCRG00000068824	dipk2aa (ENSCCRG00000040599)	chst2a (ENSCCRG00000005905)	pls1 (ENSCCRG00000001510) ##18	ENSCCRG00000079553	ephb3a (ENSCCRG00000001703)	ENSCCRG00000080413	ENSCCRG00000046768 ##22	ENSCCRG00000034891	eif4a2 (ENSCCRG00000034878)	ENSCCRG00000034914	ENSCCRG00000062367	ENSCCRG00000081640	ENSCCRG00000047291	ENSCCRG00000021924	asip2b (ENSCCRG00000077915)	ENSCCRG00000045950	ENSCCRG00000055087	ENSCCRG00000082715	zgc:153115 (ENSCCRG00000062762)	ENSCCRG00000000318	ENSCCRG00000067069	ENSCCRG00000000368
Golden-line barbel	MODERN SPECIES	175							moxd1 (ENSSGRG00000008257)	ccn2a (ENSSGRG00000008256)	fam228a (ENSSGRG00000008255)	itsn2a (ENSSGRG00000008249)	mrpl19 (ENSSGRG00000008248)	pfas (ENSSGRG00000007723)	ENSSGRG00000008247	hook1 (ENSSGRG00000007698)	cyp2n13 (ENSSGRG00000007640)	tbl1xr1b (ENSSGRG00000007544) ##22	b3gnt5b (ENSSGRG00000007527)	eif4a2 (ENSSGRG00000001870)	ENSSGRG00000001797	ENSSGRG00000001794	ENSSGRG00000001793	asip2b (ENSSGRG00000001792)	ENSSGRG00000001790	ENSSGRG00000001576	ENSSGRG00000001554	ENSSGRG00000001551	ENSSGRG00000001545	DBT (ENSSGRG00000001540)	XPR1 (ENSSGRG00000001442)	ENSSGRG00000001394	ENSSGRG00000001363
Zebrafish	MODERN SPECIES	11	zzz3 (ENSDARG00000077581)	usp33 (ENSDARG00000016163)	miga1 (ENSDARG00000020596)	fubp1 (ENSDARG00000029248)	si:ch211-71m22.3 (ENSDARG00000079075)	ENSDARG00000091266	si:ch211-71m22.1 (ENSDARG00000058638)	dipk2aa (ENSDARG00000012816)	chst2a (ENSDARG00000075007)	pls1 (ENSDARG00000039272) ##18	PCOLCE2 (ENSDARG00000008450)	ephb3a (ENSDARG00000031548)	ENSDARG00000076959	ENSDARG00000063129	kcnmb2 (ENSDARG00000006568)	tbl1xr1b (ENSDARG00000008966) ##22	b3gnt5b (ENSDARG00000004396)	eif4a2 (ENSDARG00000016477)	dcun1d1 (ENSDARG00000099642)	CCDC39 (ENSDARG00000100981)	ENSDARG00000114516	ENSDARG00000112870	ripk2 (ENSDARG00000104290)	asip2b (ENSDARG00000114760)	ENSDARG00000090623	si:dkeyp-106c3.2 (ENSDARG00000095549)	ENSDARG00000093159	zgc:153115 (ENSDARG00000069342)	ENSDARG00000078299	ENSDARG00000093342	RC3H1 (ENSDARG00000063182)
Characiphysae	ANCESTRAL SPECIES	35	ENSGT00940000159735	ENSGT00940000157634.d	ENSGT00940000156273	ENSGT00940000155917	ENSGT00390000005307	ENSGT00940000157311	ENSGT00390000008565.b	ENSGT00940000160043	ENSGT00940000165699.A.a.b	ENSGT00940000165699.A.a.a	ENSGT00950000183097.a.b ##18	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d.q	ENSGT00940000154552	ENSGT00390000015010	ENSGT00940000164654	ENSGT00940000156113	ENSGT00390000005651.n	ENSGT00730000112562	ENSGT00440000038757	ENSGT00940000164815.a	ENSGT01030000234558.C.o	ENSGT00390000013003.e.b	ENSGT00940000157143.c.b	ENSGT00940000164809	ENSGT00940000158820
Channel catfish	MODERN SPECIES	26	ak5 (ENSIPUG00000010174)	Zzz3 (ENSIPUG00000010125)	usp33 (ENSIPUG00000010029)	miga1 (ENSIPUG00000009979)	fubp1 (ENSIPUG00000009896)	ENSIPUG00000009860	si:ch211-71m22.1 (ENSIPUG00000009845)	ENSIPUG00000009832	dipk2aa (ENSIPUG00000009823)	Chst2 (ENSIPUG00000009807)	pls1 (ENSIPUG00000009762) ##18	PCOLCE2 (ENSIPUG00000009742)	ephb3a (ENSIPUG00000009725)	ENSIPUG00000009690	ENSIPUG00000009657	tbl1xr1b (ENSIPUG00000009615) ##22	b3gnt5 (ENSIPUG00000009605)	EIF4A2 (ENSIPUG00000009463)	DCUN1D1 (ENSIPUG00000009412)	ccdc39 (ENSIPUG00000009367)	ENSIPUG00000009348	ripk2 (ENSIPUG00000009324)	ENSIPUG00000009311	asip2b (ENSIPUG00000009296)	ENSIPUG00000009257	zgc:153115 (ENSIPUG00000009234)	ENSIPUG00000009209	RC3H1 (ENSIPUG00000009135)	zgc:110366 (ENSIPUG00000009095)	ENSIPUG00000009056	DBT (ENSIPUG00000009008)
Characiphysae_b	ANCESTRAL SPECIES	33	ENSGT00940000159735	ENSGT00940000157634.d	ENSGT00940000156273	ENSGT00940000155917	ENSGT00390000005307	ENSGT00940000157311	ENSGT00390000008565.b	ENSGT00940000160043	ENSGT00940000165699.A.a.b	ENSGT00940000165699.A.a.a	ENSGT00950000183097.a.b ##18	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d.q	ENSGT00940000154552	ENSGT00390000015010	ENSGT00940000164654	ENSGT00940000156113	ENSGT00390000005651.n	ENSGT00730000112562	ENSGT00440000038757	ENSGT00940000164815.a	ENSGT01030000234558.C.o	ENSGT00390000013003.e.b	ENSGT00940000157143.c.b	ENSGT00940000164809	ENSGT00940000158820
Electric eel	MODERN SPECIES	28	ST6GALNAC5 (ENSEEEG00000011618)	pigk (ENSEEEG00000011623)	ak5 (ENSEEEG00000011634)	zzz3 (ENSEEEG00000011639)	usp33 (ENSEEEG00000011655)	miga1 (ENSEEEG00000012685)	ENSEEEG00000012744	ENSEEEG00000012906	si:ch211-71m22.1 (ENSEEEG00000012907)	dipk2aa (ENSEEEG00000012908)	pls1 (ENSEEEG00000012925) ##18	ENSEEEG00000013211	ephb3a (ENSEEEG00000013219)	ENSEEEG00000013227	KCNMB3 (ENSEEEG00000013233)	tbl1xr1b (ENSEEEG00000013236) ##22	b3gnt5b (ENSEEEG00000013244)	eif4a2 (ENSEEEG00000013263)	dcun1d1 (ENSEEEG00000013769)	CCDC39 (ENSEEEG00000013795)	ENSEEEG00000013798	ENSEEEG00000013801	ripk2 (ENSEEEG00000013808)	SNX16 (ENSEEEG00000013813)	asip2b (ENSEEEG00000013814)	zgc:153115 (ENSEEEG00000013816)	ENSEEEG00000013817
Characoidei	ANCESTRAL SPECIES	20	ENSGT00940000159735	ENSGT00940000157634.d	ENSGT00940000156273	ENSGT00940000155917	ENSGT00390000005307	ENSGT00940000157311	ENSGT00390000008565.b	ENSGT00940000160043	ENSGT00940000165699.A.a.b	ENSGT00940000165699.A.a.a	ENSGT00950000183097.a.b ##18	ENSGT00940000158024.B	ENSGT00940000167389	ENSGT00950000183039.B.a	ENSGT00950000183039.B.b.d	ENSGT00940000153421.a.a.a.a.a ##22	ENSGT00940000159676.b	ENSGT00940000153783.b.b.d.q	ENSGT00940000154552	ENSGT00390000015010	ENSGT00940000164654	ENSGT00940000156113	ENSGT00390000005651.n	ENSGT00730000112562	ENSGT00440000038757	ENSGT00940000164815.a	ENSGT01030000234558.C.o	ENSGT00390000013003.e.b	ENSGT00940000157143.c.b	ENSGT00940000164809	ENSGT00940000158820
Red-bellied piranha	MODERN SPECIES	236	usp33 (ENSPNAG00000016067)	miga1 (ENSPNAG00000016081)	PLSCR1 (ENSPNAG00000016104)	fubp1 (ENSPNAG00000016207)	ENSPNAG00000016235	ENSPNAG00000016274	si:ch211-71m22.1 (ENSPNAG00000016326)	dipk2aa (ENSPNAG00000016349)	chst2a (ENSPNAG00000016356)	pls1 (ENSPNAG00000016450) ##18	PCOLCE2 (ENSPNAG00000016512)	ephb3a (ENSPNAG00000016608)	ENSPNAG00000016689	KCNMB3 (ENSPNAG00000016702)	kcnmb2 (ENSPNAG00000016723)	tbl1xr1b (ENSPNAG00000003435) ##22	b3gnt5b (ENSPNAG00000016741)	eif4a2 (ENSPNAG00000003445)	dcun1d1 (ENSPNAG00000016833)	ENSPNAG00000016861	ENSPNAG00000016890	ENSPNAG00000016942	ripk2 (ENSPNAG00000016955)	ENSPNAG00000016970	asip2b (ENSPNAG00000016974)	ENSPNAG00000016984	zgc:153115 (ENSPNAG00000016992)	ENSPNAG00000017135	ENSPNAG00000017176	RC3H1 (ENSPNAG00000017240)	zgc:110366 (ENSPNAG00000017303)
Mexicana tetra	DUPLICATION
Mexicana tetra	MODERN SPECIES	7	usp33 (ENSAMXG00000019073)	miga1 (ENSAMXG00000019082)	ENSAMXG00000032797	fubp1 (ENSAMXG00000005525)	ENSAMXG00000019084	si:ch211-71m22.1 (ENSAMXG00000019087)	dipk2aa (ENSAMXG00000040527)	chst2a (ENSAMXG00000026117)	pls1 (ENSAMXG00000019095) ##18	ENSAMXG00000019101	ephb3a (ENSAMXG00000019102)	ENSAMXG00000019105	ENSAMXG00000019804	ENSAMXG00000019115	kcnmb2 (ENSAMXG00000042970)	tbl1xr1b (ENSAMXG00000031857) ##22	b3gnt5b (ENSAMXG00000026118)	eif4a2 (ENSAMXG00000019126)	dcun1d1 (ENSAMXG00000037139)	ENSAMXG00000019141	ENSAMXG00000043010	ripk2 (ENSAMXG00000019153)	ENSAMXG00000019156	asip2b (ENSAMXG00000036659)	ENSAMXG00000031486	ENSAMXG00000019208	zgc:153115 (ENSAMXG00000036734)	ENSAMXG00000019230	ENSAMXG00000019241	ENSAMXG00000042398	RC3H1 (ENSAMXG00000019243)
Mexicana tetra	MODERN SPECIES	107			SH3RF3 (ENSAMXG00000012721)	septin10 (ENSAMXG00000012691)	SOWAHC (ENSAMXG00000012680)	akap17a (ENSAMXG00000037156)	asmt (ENSAMXG00000041096)	ENSAMXG00000029416	ENSAMXG00000034046	ARSD (ENSAMXG00000001406)	MXRA5 (ENSAMXG00000001430)	ENSAMXG00000001444 #23	nlgn4xb (ENSAMXG00000035411)	ANOS1 (ENSAMXG00000001475)	tbl1x (ENSAMXG00000001491) #22	ENSAMXG00000032978 ##22	GPR143 (ENSAMXG00000001513)	mospd2 (ENSAMXG00000001536)	ENSAMXG00000001556	glra2 (ENSAMXG00000001583)	gpm6bb (ENSAMXG00000001627)	ENSAMXG00000001654	ENSAMXG00000042868	rab9a (ENSAMXG00000026059)	egfl6 (ENSAMXG00000001700)	tmsb4x (ENSAMXG00000041720)	ENSAMXG00000032611	TLR7 (ENSAMXG00000026060)	FRMPD4 (ENSAMXG00000001751)	ARHGAP6 (ENSAMXG00000001772)	MID1 (ENSAMXG00000001793)
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000153421.a.a.a.b ##22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000153421.a.a.a.b ##22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00940000153421.a.a.a.b ##22
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00940000153421.a.a.a.b ##22
Neopterygii	ANCESTRAL SPECIES																	ENSGT00940000153421.a.a.a.b ##22
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000153421.a.a.a.b ##22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00940000153421.a.a.a.b ##22
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00940000153421.a.a.a.b ##22
Acanthomorphata	ANCESTRAL SPECIES	572															ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.a.b ##22
Euacanthomorphacea	ANCESTRAL SPECIES	31														ENSGT00950000183111.b.a.b	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00550000074917	ENSGT00730000111147	ENSGT00940000164495.c.b	ENSGT00940000155438.b	ENSGT00390000012078.a.a	ENSGT00950000182915.b.b.a.b.c.a	ENSGT00390000002505	ENSGT00940000156539	ENSGT00940000157769
Percomorphaceae	ANCESTRAL SPECIES	128														ENSGT00950000183111.b.a.b	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00550000074917
Percomorphaceae_B	ANCESTRAL SPECIES	9	ENSGT00390000002659	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000000288	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT00940000154327.b.f	ENSGT00940000160740	ENSGT00940000156073.c.b	ENSGT00940000161304.a.a	ENSGT00390000002505	ENSGT00940000156539	ENSGT00940000178684	ENSGT00940000157769	ENSGT00950000183111.b.a.b	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00550000074917	ENSGT00940000158019	ENSGT00940000153229.A.a.b	ENSGT01030000234624.b.b.c.a.a	ENSGT01030000234624.b.b.c.a.b.d	ENSGT00940000155981.h	ENSGT00940000156037.a.e	ENSGT00510000049120	ENSGT00940000156453.b
Percomorphaceae_C	ANCESTRAL SPECIES	8	ENSGT00390000002659	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000000288	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT00940000154327.b.f	ENSGT00940000160740	ENSGT00940000156073.c.b	ENSGT00940000161304.a.a	ENSGT00390000002505	ENSGT00940000156539	ENSGT00940000178684	ENSGT00940000157769	ENSGT00950000183111.b.a.b	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00550000074917	ENSGT00940000158019	ENSGT00940000153229.A.a.b	ENSGT01030000234624.b.b.c.a.a	ENSGT01030000234624.b.b.c.a.b.d	ENSGT00940000155981.h	ENSGT00940000156037.a.e	ENSGT00510000049120	ENSGT00940000156453.b
Eupercaria	ANCESTRAL SPECIES	8	ENSGT00390000002659	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000000288	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT00940000154327.b.f	ENSGT00940000160740	ENSGT00940000156073.c.b	ENSGT00940000161304.a.a	ENSGT00390000002505	ENSGT00940000156539	ENSGT00940000178684	ENSGT00940000157769	ENSGT00950000183111.b.a.b	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00550000074917	ENSGT00940000158019	ENSGT00940000153229.A.a.b	ENSGT01030000234624.b.b.c.a.a	ENSGT01030000234624.b.b.c.a.b.d	ENSGT00940000155981.h	ENSGT00940000156037.a.e	ENSGT00510000049120	ENSGT00940000156453.b
Tetraodontidae	ANCESTRAL SPECIES	93							ENSGT00940000155412.a.b	ENSGT00550000075010	ENSGT00390000011838	ENSGT00390000002659	ENSGT00390000003156.b	ENSGT01060000248556.B.l	ENSGT00940000156539	ENSGT00940000157769	ENSGT00950000183111.b.a.b	ENSGT00940000153421.a.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00940000156299	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00550000074917	ENSGT00940000158019.i	ENSGT00940000153229.A.a.b	ENSGT01030000234624.b.b.c.a.a
Fugu	MODERN SPECIES	12	ryk (ENSTRUG00000016581)	SLCO2A1 (ENSTRUG00000016587)	ENSTRUG00000026279	zgc:109982 (ENSTRUG00000016623)	dr1 (ENSTRUG00000016627)	med8 (ENSTRUG00000016630)	tmco1 (ENSTRUG00000026552)	magoh (ENSTRUG00000019974)	cpt2 (ENSTRUG00000016647)	cpt2 (ENSTRUG00000016665)	ndufa11 (ENSTRUG00000025577)	scly (ENSTRUG00000016717)	akr1a1b (ENSTRUG00000016722)	uhmk1 (ENSTRUG00000029224)	mep1ba (ENSTRUG00000016750)	ENSTRUG00000013251 ##22	NAALADL2 (ENSTRUG00000020432)	nlgn1 (ENSTRUG00000001272)	ect2 (ENSTRUG00000002668)	ENSTRUG00000030222	b3gnt5a (ENSTRUG00000005478)	ENSTRUG00000003813	rfc4 (ENSTRUG00000005511)	b4galt6 (ENSTRUG00000005726)	ttr (ENSTRUG00000021323)	ENSTRUG00000032927	PLCD3 (ENSTRUG00000003439)	cdh2 (ENSTRUG00000001621)	ENSTRUG00000032083
Tetraodon	MODERN SPECIES	26	ENSTNIG00000005410	gdi2 (ENSTNIG00000005409)	ankrd16 (ENSTNIG00000000357)	glt8d2 (ENSTNIG00000002381)	ENSTNIG00000003750	ENSTNIG00000005408	ENSTNIG00000010806	ENSTNIG00000000965	ENSTNIG00000000096	cpt2 (ENSTNIG00000010805)	ENSTNIG00000004349	cpt2 (ENSTNIG00000005804)	akr1a1b (ENSTNIG00000010803)	uhmk1 (ENSTNIG00000010802)	MEP1B (ENSTNIG00000010801)	ENSTNIG00000010800 ##22	ENSTNIG00000010799	nlgn1 (ENSTNIG00000010798)	ENSTNIG00000019749	ENSTNIG00000014490	ect2 (ENSTNIG00000010470)	rfc4 (ENSTNIG00000010471)	b4galt6 (ENSTNIG00000010472)	ttr (ENSTNIG00000010473)	DSG3 (ENSTNIG00000010474)	ENSTNIG00000010475	cdh2 (ENSTNIG00000010476)	ENSTNIG00000010477	ENSTNIG00000010478	ENSTNIG00000010479	ENSTNIG00000002373
Eupecaria_A	ANCESTRAL SPECIES	11	ENSGT00390000002659	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000000288	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT00940000154327.b.f	ENSGT00940000160740	ENSGT00940000156073.c.b	ENSGT00940000161304.a.a	ENSGT00390000002505	ENSGT00940000156539	ENSGT00940000178684	ENSGT00940000157769	ENSGT00950000183111.b.a.b	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00550000074917	ENSGT00940000158019	ENSGT00940000153229.A.a.b	ENSGT01030000234624.b.b.c.a.a	ENSGT01030000234624.b.b.c.a.b.d	ENSGT00940000155981.h	ENSGT00940000156037.a.e	ENSGT00510000049120	ENSGT00940000156453.b
Ballan wrasse	MODERN SPECIES	2	tmco1 (ENSLBEG00000000997)	uck2a (ENSLBEG00000001017)	aatf (ENSLBEG00000001051)	cpt2 (ENSLBEG00000001085)	magoh (ENSLBEG00000001113)	scp2b (ENSLBEG00000001136)	PODN (ENSLBEG00000001150)	slc1a7b (ENSLBEG00000001170)	ENSLBEG00000001236	ENSLBEG00000001269	akr1a1b (ENSLBEG00000001298)	ENSLBEG00000001327	uhmk1 (ENSLBEG00000001341)	mep1ba (ENSLBEG00000001386)	ENSLBEG00000001449	ENSLBEG00000001488 ##22	ENSLBEG00000001545	ENSLBEG00000001638
Eupecaria_B	ANCESTRAL SPECIES	10	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000000288	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT00940000154327.b.f	ENSGT00940000160740	ENSGT00940000156073.c.b	ENSGT00940000161304.a.a	ENSGT00390000002505	ENSGT00940000156539	ENSGT00940000157769	ENSGT00950000183111.b.a.b	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00550000074917	ENSGT00940000158019	ENSGT00940000153229.A.a.b	ENSGT01030000234624.b.b.c.a.a	ENSGT01030000234624.b.b.c.a.b.d	ENSGT00940000155981.h	ENSGT00940000156037.a.e	ENSGT00510000049120	ENSGT00940000156453.b
Eupecaria_C	ANCESTRAL SPECIES	4	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000000288	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT00940000154327.b.f	ENSGT00940000160740	ENSGT00940000156073.c.b	ENSGT00940000161304.a.a	ENSGT00390000002505	ENSGT00940000156539	ENSGT00940000157769	ENSGT00950000183111.b.a.b	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00550000074917	ENSGT00940000158019	ENSGT00940000153229.A.a.b	ENSGT01030000234624.b.b.c.a.a	ENSGT01030000234624.b.b.c.a.b.d	ENSGT00940000155981.h	ENSGT00940000156037.a.e	ENSGT00510000049120	ENSGT00940000156453.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	3	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000000288	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT00940000154327.b.f	ENSGT00940000160740	ENSGT00940000156073.c.b	ENSGT00940000161304.a.a	ENSGT00390000002505	ENSGT00940000156539	ENSGT00940000157769	ENSGT00950000183111.b.a.b	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00550000074917	ENSGT00940000158019	ENSGT00940000153229.A.a.b	ENSGT01030000234624.b.b.c.a.a	ENSGT01030000234624.b.b.c.a.b.d	ENSGT00940000155981.h	ENSGT00940000156037.a.e	ENSGT00510000049120	ENSGT00940000156453.b
Large yellow croaker	MODERN SPECIES	489	ENSLCRG00005018983	B3GNT3 (ENSLCRG00005018982)	B3GNT3 (ENSLCRG00005018981)	B3GNT3 (ENSLCRG00005018980)	ENSLCRG00005018183	slc5a5 (ENSLCRG00005018131)	cluap1 (ENSLCRG00005018128)	ENSLCRG00005018095	uhrf1 (ENSLCRG00005017717)	kdm4b (ENSLCRG00005017631)	ENSLCRG00005017628	HYKK (ENSLCRG00005017627)	ENSLCRG00005017626	ENSLCRG00005017625	ENSLCRG00005017620	ENSLCRG00005017594 ##22	ENSLCRG00005017591	NAALADL2 (ENSLCRG00005017588)	nlgn1 (ENSLCRG00005017529)	ENSLCRG00005017524	ect2 (ENSLCRG00005015912)	b3gnt5a (ENSLCRG00005015904)	MCF2L2 (ENSLCRG00005015840)	rfc4 (ENSLCRG00005015835)	b4galt6 (ENSLCRG00005015788)	ttr (ENSLCRG00005015784)	ENSLCRG00005015782	ENSLCRG00005015781	ENSLCRG00005015780	ENSLCRG00005015779	ENSLCRG00005015778
European seabass	MODERN SPECIES	17	tmco1 (ENSDLAG00005027710)	uck2a (ENSDLAG00005030874)	ENSDLAG00005006259	cpt2 (ENSDLAG00005006297)	scp2b (ENSDLAG00005006311)	ENSDLAG00005006348	slc1a7b (ENSDLAG00005006369)	ENSDLAG00005006471	ENSDLAG00005006475	ENSDLAG00005006509	ENSDLAG00005006676	ENSDLAG00005006741	ENSDLAG00005031597	ENSDLAG00005006865	ENSDLAG00005031380	ENSDLAG00005006879 ##22	NAALADL2 (ENSDLAG00005006909)	ENSDLAG00005006928	ENSDLAG00005030076	ENSDLAG00005006946	nlgn1 (ENSDLAG00005006976)	SPATA16 (ENSDLAG00005007751)	ect2 (ENSDLAG00005007777)	ENSDLAG00005007937	b3gnt5a (ENSDLAG00005032048)	ENSDLAG00005034981	ENSDLAG00005008401	TTR (ENSDLAG00005031018)	ENSDLAG00005008474	ENSDLAG00005030275	ENSDLAG00005008504
Gilthead seabream	MODERN SPECIES	2	tmco1 (ENSSAUG00010008460)	uck2a (ENSSAUG00010008456)	ENSSAUG00010008451	magoh (ENSSAUG00010008450)	cpt2 (ENSSAUG00010008447)	ENSSAUG00010008445	PODN (ENSSAUG00010008442)	slc1a7b (ENSSAUG00010008398)	SHISAL2A (ENSSAUG00010008392)	ENSSAUG00010008389	ENSSAUG00010008385	akr1a1b (ENSSAUG00010008040)	uhmk1 (ENSSAUG00010008038)	mep1ba (ENSSAUG00010008037)	ENSSAUG00010008036	ENSSAUG00010008028 ##22	ENSSAUG00010008025	NAALADL2 (ENSSAUG00010008019)	nlgn1 (ENSSAUG00010008013)	ect2 (ENSSAUG00010007978)	b3gnt5a (ENSSAUG00010007972)	ENSSAUG00010007959	rfc4 (ENSSAUG00010007946)	b4galt6 (ENSSAUG00010007906)	ttr (ENSSAUG00010007903)	ENSSAUG00010007898	ENSSAUG00010007893	TUT4 (ENSSAUG00010007879)	gpx7 (ENSSAUG00010007871)	TUT4 (ENSSAUG00010007861)	ENSSAUG00010007848
Perciformes	ANCESTRAL SPECIES	8	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000000288	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT00940000154327.b.f	ENSGT00940000160740	ENSGT00940000156073.c.b	ENSGT00940000161304.a.a	ENSGT00390000002505	ENSGT00940000156539	ENSGT00940000157769	ENSGT00950000183111.b.a.b	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00940000156299	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00550000074917
Perciformes_a	ANCESTRAL SPECIES	6	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000000288	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT00940000154327.b.f	ENSGT00940000160740	ENSGT00940000156073.c.b	ENSGT00940000161304.a.a	ENSGT00390000002505	ENSGT00940000156539	ENSGT00940000157769	ENSGT00950000183111.b.a.b	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00940000156299	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00550000074917
Pike perch	MODERN SPECIES	26	ptprfa (ENSSLUG00000001867)	ENSSLUG00000000999	ENSSLUG00000000985	st3gal3a (ENSSLUG00000000977)	ENSSLUG00000000974	rad54l (ENSSLUG00000000942)	ENSSLUG00000000909	ARHGAP39 (ENSSLUG00000000897)	ENSSLUG00000000888	rad23ab (ENSSLUG00000000882)	NQO1 (ENSSLUG00000000876)	EPS15L1 (ENSSLUG00000000648)	klf2a (ENSSLUG00000000552)	cherp (ENSSLUG00000000467)	ENSSLUG00000000441	ENSSLUG00000000413 ##22	ENSSLUG00000000402	NAALADL2 (ENSSLUG00000000397)	ENSSLUG00000000391	nlgn1 (ENSSLUG00000000387)	ENSSLUG00000000379	ENSSLUG00000000374	ENSSLUG00000000371
Channel bull blenny	MODERN SPECIES	18	glulb (ENSCGOG00000003558)	pbx1b (ENSCGOG00000003298)	med8 (ENSCGOG00000003229)	aldh9a1a.1 (ENSCGOG00000003054)	uck2a (ENSCGOG00000002942)	magoh (ENSCGOG00000002885)	cpt2 (ENSCGOG00000002874)	PODN (ENSCGOG00000002771)	ENSCGOG00000002677	ENSCGOG00000002652	ENSCGOG00000002626	akr1a1b (ENSCGOG00000020183)	uhmk1 (ENSCGOG00000020172)	mep1ba (ENSCGOG00000020154)	ENSCGOG00000020131	ENSCGOG00000019624 ##22	NAALADL2 (ENSCGOG00000019610)	ENSCGOG00000019608	ENSCGOG00000019578	nlgn1 (ENSCGOG00000019532)	ect2 (ENSCGOG00000018779)	b3gnt5a (ENSCGOG00000018754)	MCF2L2 (ENSCGOG00000018624)	rfc4 (ENSCGOG00000018469)	ENSCGOG00000018461	LONP1 (ENSCGOG00000018110)	RSPH6A (ENSCGOG00000018090)	dohh (ENSCGOG00000018088)	LRRC24 (ENSCGOG00000018087)	ENSCGOG00000018085	ENSCGOG00000018038
Cottioidei	ANCESTRAL SPECIES	5	ENSGT00390000002659	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000000288	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT00940000178192	ENSGT00940000154327.b.f	ENSGT00940000160740	ENSGT00940000156073.c.b	ENSGT00940000161304.a.a	ENSGT00390000002505	ENSGT00940000156539	ENSGT00940000157769	ENSGT00950000183111.b.a.b	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.a.b ##22	ENSGT00940000155026.d	ENSGT00940000159943	ENSGT00530000063498.B	ENSGT00730000111085.A	ENSGT00950000182946.lb.b.g	ENSGT00530000063646.a	ENSGT00940000154149.b.a.g.b	ENSGT00390000003574.a	ENSGT00390000008371.a	ENSGT00390000014886	ENSGT00940000159466	ENSGT00950000183190.a.a.a.b	ENSGT00940000155705.b	ENSGT00940000156259.a.a	ENSGT00940000158851
Lumpfish	MODERN SPECIES	19	uck2a (ENSCLMG00005010543)	ENSCLMG00005010541	magoh (ENSCLMG00005010540)	ENSCLMG00005010538	ENSCLMG00005010536	scp2b (ENSCLMG00005010535)	PODN (ENSCLMG00005010534)	slc1a7b (ENSCLMG00005010533)	SHISAL2A (ENSCLMG00005010532)	ENSCLMG00005010529	akr1a1b (ENSCLMG00005010518)	uhmk1 (ENSCLMG00005010513)	mep1ba (ENSCLMG00005010504)	ENSCLMG00005010503	ENSCLMG00005010502	ENSCLMG00005010500 ##22	nrd1b (ENSCLMG00005009102)	ENSCLMG00005009096	orc1 (ENSCLMG00005008836)	prpf38a (ENSCLMG00005008823)	ENSCLMG00005008813	TRMT1L (ENSCLMG00005008807)	niban1a (ENSCLMG00005008686)	kifap3a (ENSCLMG00005008607)	ntmt2 (ENSCLMG00005008605)	ENSCLMG00005008604	prrx1b (ENSCLMG00005008603)	ENSCLMG00005008601	ENSCLMG00005008599	ENSCLMG00005008597	MAST2 (ENSCLMG00005006053)
Stickleback	MODERN SPECIES	8	ENSGACG00000003315	ENSGACG00000003316	C19orf25 (ENSGACG00000003317)	reep6 (ENSGACG00000003320)	zgc:113223 (ENSGACG00000003324)	ENSGACG00000003329	PODN (ENSGACG00000003347)	SLC1A7 (ENSGACG00000003362)	ENSGACG00000003374	ENSGACG00000003379	ENSGACG00000003383	akr1a1b (ENSGACG00000003386)	uhmk1 (ENSGACG00000003529)	mep1ba (ENSGACG00000003537)	ENSGACG00000003549	ENSGACG00000003556 ##22	nrd1b (ENSGACG00000003577)	ENSGACG00000003615	KIF1A (ENSGACG00000003623)	scly (ENSGACG00000003637)	ESPNL (ENSGACG00000003659)	KLHL30 (ENSGACG00000003665)	ENSGACG00000003673	SNED1 (ENSGACG00000003698)	ryk (ENSGACG00000003709)	SLCO2A1 (ENSGACG00000003718)	rab6ba (ENSGACG00000003726)	im:7152348 (ENSGACG00000003746)	cep63 (ENSGACG00000003749)	amotl2a (ENSGACG00000003755)	sap130a (ENSGACG00000003760)
Percomorphaceae_D	ANCESTRAL SPECIES	8	ENSGT00390000002659	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000000288	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT00940000154327.b.f	ENSGT00940000160740	ENSGT00940000156073.c.b	ENSGT00940000161304.a.a	ENSGT00390000002505	ENSGT00940000156539	ENSGT00940000178684	ENSGT00940000157769	ENSGT00950000183111.b.a.b	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00550000074917	ENSGT00940000158019	ENSGT00940000153229.A.a.b	ENSGT01030000234624.b.b.c.a.a	ENSGT01030000234624.b.b.c.a.b.c.b	ENSGT01030000234624.b.b.c.a.b.d	ENSGT00940000155981.h	ENSGT00510000049120	ENSGT00940000156453.b
Anabantaria	ANCESTRAL SPECIES	7	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000000288	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT00940000154327.b.f	ENSGT00940000160740	ENSGT00940000156073.c.b	ENSGT00940000161304.a.a	ENSGT00390000002505	ENSGT00940000156539	ENSGT00940000157769	ENSGT00950000183111.b.a.b	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00940000156299	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00550000074917	ENSGT00940000158019	ENSGT00940000153229.A.a.b	ENSGT01030000234624.b.b.c.a.a	ENSGT01030000234624.b.b.c.a.b.d	ENSGT00940000155981.h	ENSGT00510000049120	ENSGT00940000156453.b	ENSGT00390000011620.a.a.a	ENSGT00550000074980
Anabantoidei	ANCESTRAL SPECIES	33														ENSGT00950000183111.b.a.b	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00940000156299	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00550000074917	ENSGT01030000234624.b.b.c.a.b.d	ENSGT00940000155981.h	ENSGT00510000049120	ENSGT00940000156453.b	ENSGT00390000011620.a.a.a	ENSGT00550000074980	ENSGT00390000018402	ENSGT00390000005462	ENSGT00940000155060.C.a.b
Climbing perch	MODERN SPECIES	17	CDH2 (ENSATEG00000007302)	ENSATEG00000028170	ENSATEG00000029321	ENSATEG00000007537	ENSATEG00000007575	b3gnt5a (ENSATEG00000007604)	ect2 (ENSATEG00000007614)	ENSATEG00000007727	SPATA16 (ENSATEG00000007733)	ENSATEG00000030109	NLGN1 (ENSATEG00000007830)	NAALADL2 (ENSATEG00000007892)	ENSATEG00000025799	ENSATEG00000029088	ENSATEG00000007996	ENSATEG00000008046 ##22	ENSATEG00000019982	ENSATEG00000027368	ENSATEG00000008141	ENSATEG00000027763	ENSATEG00000026829	ENSATEG00000029623	ENSATEG00000008282	ENSATEG00000008313	ENSATEG00000008361	ENSATEG00000029931	slc1a7b (ENSATEG00000008396)	ENSATEG00000008442	scp2b (ENSATEG00000008483)	cpt2 (ENSATEG00000008493)	magoh (ENSATEG00000028113)
Siamese fighting fish	MODERN SPECIES	15	sass6 (ENSBSLG00000000714)	ENSBSLG00000000786	rpl36 (ENSBSLG00000000854)	pde6d (ENSBSLG00000001245)	phb2b (ENSBSLG00000001342)	ENSBSLG00000001477	lrrc40 (ENSBSLG00000001485)	ENSBSLG00000001492	commd2 (ENSBSLG00000001494)	lmnb2 (ENSBSLG00000001546)	TRAPPC8 (ENSBSLG00000001873)	ctns (ENSBSLG00000002214)	ENSBSLG00000002305	ENSBSLG00000002329	ENSBSLG00000002401	ENSBSLG00000002426 ##22	ENSBSLG00000002522	NAALADL2 (ENSBSLG00000002532)	ENSBSLG00000002565	ENSBSLG00000002574	nlgn1 (ENSBSLG00000002576)	nlgn1 (ENSBSLG00000002625)	ect2 (ENSBSLG00000002935)	ENSBSLG00000003202	ect2 (ENSBSLG00000003210)	ENSBSLG00000003788	ENSBSLG00000004006	b3gnt5a (ENSBSLG00000004013)	ENSBSLG00000004021	ENSBSLG00000004054	ENSBSLG00000004112
Zig-zag eel	MODERN SPECIES	18	aldh9a1a.1 (ENSMAMG00000007648)	tmco1 (ENSMAMG00000007636)	uck2a (ENSMAMG00000007620)	ENSMAMG00000007614	magoh (ENSMAMG00000027700)	cpt2 (ENSMAMG00000007578)	scp2b (ENSMAMG00000028717)	ENSMAMG00000007549	slc1a7b (ENSMAMG00000007534)	ENSMAMG00000007518	ENSMAMG00000007506	ENSMAMG00000007457	ENSMAMG00000007396	ENSMAMG00000007339	ENSMAMG00000024992	ENSMAMG00000007289 ##22	NAALADL2 (ENSMAMG00000007242)	ENSMAMG00000024981	ENSMAMG00000025926	nlgn1 (ENSMAMG00000007147)	ect2 (ENSMAMG00000007079)	b3gnt5a (ENSMAMG00000007064)	ENSMAMG00000007016	ENSMAMG00000006970	ENSMAMG00000006918	TTR (ENSMAMG00000006873)	ENSMAMG00000006841	ENSMAMG00000006823	ENSMAMG00000006788	cdh2 (ENSMAMG00000006737)	ENSMAMG00000022106
Carangaria	ANCESTRAL SPECIES	7	ENSGT00390000002659	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000000288	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT00940000154327.b.f	ENSGT00940000160740	ENSGT00940000156073.c.b	ENSGT00940000161304.a.a	ENSGT00390000002505	ENSGT00940000156539	ENSGT00940000178684	ENSGT00940000157769	ENSGT00950000183111.b.a.b	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00550000074917	ENSGT00940000157546	ENSGT00390000012434	ENSGT00940000165232	ENSGT00390000005338	ENSGT00390000000568	ENSGT00390000008489	ENSGT00940000160274	ENSGT00390000011943.b
Carangaria_A	ANCESTRAL SPECIES	3	ENSGT00390000002659	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000000288	ENSGT00940000178376	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT00940000154327.b.f	ENSGT00940000160740	ENSGT00940000156073.c.b	ENSGT00940000161304.a.a	ENSGT00390000002505	ENSGT00940000156539	ENSGT00940000157769	ENSGT00950000183111.b.a.b	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00550000074917	ENSGT00940000157546	ENSGT00390000012434	ENSGT00940000165232	ENSGT00390000005338	ENSGT00390000000568	ENSGT00390000008489	ENSGT00940000160274	ENSGT00390000011943.b
Seriola	ANCESTRAL SPECIES	21	ENSGT00940000160836.d.b.b	ENSGT00390000005338	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000000288	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT00940000154327.b.f	ENSGT00940000160740	ENSGT00940000156073.c.b	ENSGT00940000161304.a.a	ENSGT00390000002505	ENSGT00940000156539	ENSGT00940000157769	ENSGT00950000183111.b.a.b	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00550000074917	ENSGT00940000157546	ENSGT00390000012434	ENSGT00940000165232	ENSGT00390000002659	ENSGT00940000163309	ENSGT00390000011838	ENSGT00940000163762.a.b	ENSGT00390000010047.g.a
Greater amberjack	DUPLICATION
Greater amberjack	MODERN SPECIES	110	uck2a (ENSSDUG00000000533)	aatf (ENSSDUG00000000520)	magoh (ENSSDUG00000000474)	cpt2 (ENSSDUG00000000458)	scp2b (ENSSDUG00000000422)	PODN (ENSSDUG00000000409)	slc1a7b (ENSSDUG00000000346)	SHISAL2A (ENSSDUG00000000338)	ENSSDUG00000000323	akr1a1b (ENSSDUG00000000280)	uhmk1 (ENSSDUG00000000226)	MEP1B (ENSSDUG00000000179)	mep1ba (ENSSDUG00000000096)	ENSSDUG00000000079	ENSSDUG00000022711 ##22	ENSSDUG00000022696 ##22	NAALADL2 (ENSSDUG00000022683)	nlgn1 (ENSSDUG00000022680)	SPATA16 (ENSSDUG00000022669)	ect2 (ENSSDUG00000022620)	b3gnt5a (ENSSDUG00000022604)	MCF2L2 (ENSSDUG00000022590)	rfc4 (ENSSDUG00000022576)	slc5a9 (ENSSDUG00000022566)	ndufa11 (ENSSDUG00000022559)	zgc:171480 (ENSSDUG00000022556)	tmco1 (ENSSDUG00000022551)	aldh9a1a.1 (ENSSDUG00000022536)	med8 (ENSSDUG00000022527)	pbx1b (ENSSDUG00000022517)	glulb (ENSSDUG00000022512)
Greater amberjack	MODERN SPECIES	110	ENSSDUG00000000539	uck2a (ENSSDUG00000000533)	aatf (ENSSDUG00000000520)	magoh (ENSSDUG00000000474)	cpt2 (ENSSDUG00000000458)	scp2b (ENSSDUG00000000422)	PODN (ENSSDUG00000000409)	slc1a7b (ENSSDUG00000000346)	SHISAL2A (ENSSDUG00000000338)	ENSSDUG00000000323	akr1a1b (ENSSDUG00000000280)	uhmk1 (ENSSDUG00000000226)	MEP1B (ENSSDUG00000000179)	mep1ba (ENSSDUG00000000096)	ENSSDUG00000000079	ENSSDUG00000022711 ##22	ENSSDUG00000022696 ##22	NAALADL2 (ENSSDUG00000022683)	nlgn1 (ENSSDUG00000022680)	SPATA16 (ENSSDUG00000022669)	ect2 (ENSSDUG00000022620)	b3gnt5a (ENSSDUG00000022604)	MCF2L2 (ENSSDUG00000022590)	rfc4 (ENSSDUG00000022576)	slc5a9 (ENSSDUG00000022566)	ndufa11 (ENSSDUG00000022559)	zgc:171480 (ENSSDUG00000022556)	tmco1 (ENSSDUG00000022551)	aldh9a1a.1 (ENSSDUG00000022536)	med8 (ENSSDUG00000022527)	pbx1b (ENSSDUG00000022517)
Yellowtail amberjack	MODERN SPECIES	3180	ctns (ENSSLDG00000000507)	uck2a (ENSSLDG00000000517)	ENSSLDG00000000553	magoh (ENSSLDG00000000574)	cpt2 (ENSSLDG00000000586)	scp2b (ENSSLDG00000000629)	PODN (ENSSLDG00000000637)	slc1a7b (ENSSLDG00000000710)	SHISAL2A (ENSSLDG00000000763)	ENSSLDG00000000779	akr1a1b (ENSSLDG00000000788)	uhmk1 (ENSSLDG00000000833)	ENSSLDG00000000892	mep1ba (ENSSLDG00000000921)	ENSSLDG00000001053	ENSSLDG00000001060 ##22	NAALADL2 (ENSSLDG00000001094)	nlgn1 (ENSSLDG00000001150)	SPATA16 (ENSSLDG00000001200)
Barramundi perch	MODERN SPECIES	295										ENSLCAG00010020192	ENSLCAG00010020191	akr1a1b (ENSLCAG00010020171)	uhmk1 (ENSLCAG00010020168)	mep1ba (ENSLCAG00010020166)	ENSLCAG00010020164	ENSLCAG00010020155 ##22	ENSLCAG00010020150
Pleuronectoidei	ANCESTRAL SPECIES	40	ENSGT00390000002659	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000000288	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT00940000154327.b.f	ENSGT00940000160740	ENSGT00940000156073.c.b	ENSGT00940000161304.a.a	ENSGT00390000002505	ENSGT00940000156539	ENSGT00940000178684	ENSGT00940000157769	ENSGT00950000183111.b.a.b	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00940000156299	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00550000074917	ENSGT00940000157546
Tongue sole	MODERN SPECIES	11			nlgn1 (ENSCSEG00000009014)	ift88 (ENSCSEG00000009003)	lmo4b (ENSCSEG00000008982)	HS2ST1 (ENSCSEG00000008966)	ENSCSEG00000008962	SOX14 (ENSCSEG00000008957)	hdlbpa (ENSCSEG00000008853)	FARP2 (ENSCSEG00000008704)	boka (ENSCSEG00000008678)	atg4b (ENSCSEG00000008648)	dtymk (ENSCSEG00000008633)	agxta (ENSCSEG00000008618)	zgc:103559 (ENSCSEG00000008594)	ENSCSEG00000008563 ##22	kyat3.2 (ENSCSEG00000008479)	ENSCSEG00000008463	barhl2 (ENSCSEG00000008457)	tgfbr3 (ENSCSEG00000008418)	brdt (ENSCSEG00000008394)	EPHX4 (ENSCSEG00000008372)	ENSCSEG00000008362	C1orf146 (ENSCSEG00000008350)	ENSCSEG00000008345	ENSCSEG00000008309	dr1 (ENSCSEG00000008302)	zgc:109982 (ENSCSEG00000008283)	ENSCSEG00000008280	LRRC8C (ENSCSEG00000008278)	ENSCSEG00000008275
Turbot	MODERN SPECIES	3	aldh9a1a.1 (ENSSMAG00000003462)	tmco1 (ENSSMAG00000003525)	uck2a (ENSSMAG00000028536)	ENSSMAG00000003681	magoh (ENSSMAG00000003712)	cpt2 (ENSSMAG00000003691)	scp2b (ENSSMAG00000003734)	ENSSMAG00000003752	slc1a7b (ENSSMAG00000003772)	ENSSMAG00000037404	ENSSMAG00000003829	ENSSMAG00000003868	ENSSMAG00000003891	ENSSMAG00000003915	ENSSMAG00000023002	ENSSMAG00000003967 ##22	NAALADL2 (ENSSMAG00000004025)	nlgn1 (ENSSMAG00000004105)	ENSSMAG00000004148	ENSSMAG00000035003	ect2 (ENSSMAG00000004933)	ENSSMAG00000004533	ENSSMAG00000004476	ENSSMAG00000004336	ENSSMAG00000004293	ENSSMAG00000004230	ENSSMAG00000004205	ENSSMAG00000004187	ENSSMAG00000004170	ENSSMAG00000004158	ENSSMAG00000029753
Ovalentaria	ANCESTRAL SPECIES	9	ENSGT00390000002659	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000000288	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT00940000154327.b.f	ENSGT00940000160740	ENSGT00940000156073.c.b	ENSGT00940000161304.a.a	ENSGT00390000002505	ENSGT00940000156539	ENSGT00940000178684	ENSGT00940000157769	ENSGT00950000183111.b.a.b	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00550000074917	ENSGT00940000155981.h	ENSGT00940000156037.a.e	ENSGT00510000049120	ENSGT00940000156453.b	ENSGT00390000011620.a.a.a	ENSGT00550000074980	ENSGT00390000018402	ENSGT00390000005462
Atherinomorphae	ANCESTRAL SPECIES	7	ENSGT00390000002659	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000000288	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT00940000154327.b.f	ENSGT00940000160740	ENSGT00940000156073.c.b	ENSGT00940000161304.a.a	ENSGT00390000002505	ENSGT00940000156539	ENSGT00940000178684	ENSGT00940000157769	ENSGT00950000183111.b.a.b	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00940000156299	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00550000074917	ENSGT00940000155981.h
Cyprinodontiformes	ANCESTRAL SPECIES	7	ENSGT00390000002659	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000000288	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT00940000154327.b.f	ENSGT00940000160740	ENSGT00940000156073.c.b	ENSGT00940000161304.a.a	ENSGT00390000002505	ENSGT00940000156539	ENSGT00940000178684	ENSGT00940000157769	ENSGT00950000183111.b.a.b	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00940000156299	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00550000074917	ENSGT00940000155981.h
Cyprinodontoidei	ANCESTRAL SPECIES	10	ENSGT00390000002659	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000000288	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT00940000154327.b.f	ENSGT00940000160740	ENSGT00940000156073.c.b	ENSGT00940000161304.a.a	ENSGT00390000002505	ENSGT00940000156539	ENSGT00940000178684	ENSGT00940000157769	ENSGT00950000183111.b.a.b	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00940000156299	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00550000074917	ENSGT00940000155981.h
NAME_4	ANCESTRAL SPECIES																	ENSGT00940000153421.a.a.a.b ##22
Mummichog	MODERN SPECIES	2347										ENSFHEG00000012910	ENSFHEG00000012891	akr1a1b (ENSFHEG00000012875)	uhmk1 (ENSFHEG00000012818)	mep1ba (ENSFHEG00000012797)	ENSFHEG00000012773	ENSFHEG00000012757 ##22	nlgn1 (ENSFHEG00000012711)
Sheepshead minnow	MODERN SPECIES	1737																ENSCVAG00000014140 ##22
Poeciliinae	ANCESTRAL SPECIES	7	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000000288	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT00940000154327.b.f	ENSGT00940000160740	ENSGT00940000156073.c.b	ENSGT00940000161304.a.a	ENSGT00390000002505	ENSGT00940000156539	ENSGT00940000157769	ENSGT00950000183111.b.a.b	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00940000156299	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00550000074917	ENSGT00940000155981.h
Poecilia	ANCESTRAL SPECIES	1	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000000288	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT00940000154327.b.f	ENSGT00940000160740	ENSGT00940000156073.c.b	ENSGT00940000161304.a.a	ENSGT00390000002505	ENSGT00940000156539	ENSGT00940000157769	ENSGT00950000183111.b.a.b	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00940000156299	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00550000074917	ENSGT00940000155981.h
NAME_6	ANCESTRAL SPECIES	134	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000000288	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT00940000154327.b.f	ENSGT00940000160740	ENSGT00940000156073.c.b	ENSGT00940000161304.a.a	ENSGT00390000002505	ENSGT00940000156539	ENSGT00940000157769	ENSGT00950000183111.b.a.b	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00940000156299
Amazon molly	MODERN SPECIES	316	aldh9a1a.1 (ENSPFOG00000016210)	tmco1 (ENSPFOG00000016184)	uck2a (ENSPFOG00000016160)	aatf (ENSPFOG00000020853)	magoh (ENSPFOG00000016141)	cpt2 (ENSPFOG00000016121)	scp2b (ENSPFOG00000023245)	PODN (ENSPFOG00000016080)	slc1a7b (ENSPFOG00000016000)	SHISAL2A (ENSPFOG00000015989)	ENSPFOG00000015976	akr1a1b (ENSPFOG00000015949)	uhmk1 (ENSPFOG00000015923)	mep1ba (ENSPFOG00000015911)	ENSPFOG00000015896	ENSPFOG00000015853 ##22	ENSPFOG00000024546	ENSPFOG00000023752	NAALADL2 (ENSPFOG00000023256)	nlgn1 (ENSPFOG00000015769)	ENSPFOG00000015755	ect2 (ENSPFOG00000015657)
Sailfin molly	MODERN SPECIES	500																ENSPLAG00000012476 ##22
Guppy	MODERN SPECIES	456	tmco1 (ENSPREG00000013552)	uck2a (ENSPREG00000013526)	aatf (ENSPREG00000013521)	magoh (ENSPREG00000013501)	cpt2 (ENSPREG00000013481)	scp2b (ENSPREG00000013465)	PODN (ENSPREG00000013443)	slc1a7b (ENSPREG00000013428)	SHISAL2A (ENSPREG00000013373)	ENSPREG00000013352	akr1a1b (ENSPREG00000013325)	uhmk1 (ENSPREG00000013295)	mep1ba (ENSPREG00000013230)	ENSPREG00000013217	ENSPREG00000013199	ENSPREG00000013129 ##22	NAALADL2 (ENSPREG00000013101)	nlgn1 (ENSPREG00000013053)	ect2 (ENSPREG00000012918)	ENSPREG00000012898	b3gnt5a (ENSPREG00000012896)	MCF2L2 (ENSPREG00000012824)	rfc4 (ENSPREG00000012765)	ENSPREG00000012752	ENSPREG00000012743	ENSPREG00000012730	ENSPREG00000012720	cdh2 (ENSPREG00000012689)	ENSPREG00000012673	nr2f6b (ENSPREG00000012663)	ENSPREG00000012646
Platyfish	MODERN SPECIES	23	aldh9a1a.1 (ENSXMAG00000006313)	tmco1 (ENSXMAG00000006311)	uck2a (ENSXMAG00000006302)	aatf (ENSXMAG00000020205)	magoh (ENSXMAG00000006297)	cpt2 (ENSXMAG00000006291)	scp2b (ENSXMAG00000003116)	PODN (ENSXMAG00000003118)	slc1a7b (ENSXMAG00000003122)	SHISAL2A (ENSXMAG00000016021)	ENSXMAG00000016024	akr1a1b (ENSXMAG00000016033)	uhmk1 (ENSXMAG00000016056)	mep1ba (ENSXMAG00000016069)	KCNMB2 (ENSXMAG00000029640)	ENSXMAG00000016105 ##22	NAALADL2 (ENSXMAG00000004767)	ENSXMAG00000022892	nlgn1 (ENSXMAG00000004731)	ect2 (ENSXMAG00000028187)	MCF2L2 (ENSXMAG00000024616)	ENSXMAG00000021663	b3gnt5a (ENSXMAG00000020362)	rfc4 (ENSXMAG00000007006)	ENSXMAG00000012241	cdh2 (ENSXMAG00000007020)	ENSXMAG00000021727	ENSXMAG00000000724	ENSXMAG00000022740	ENSXMAG00000000726	smim7 (ENSXMAG00000022934)
Aplocheiloidei	ANCESTRAL SPECIES	252													ENSGT00390000002505	ENSGT00940000156539	ENSGT00940000157769	ENSGT00940000153421.a.a.a.b ##22	ENSGT00940000156299	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00550000074917
Turquoise killifish	MODERN SPECIES	1621	DDX10 (ENSNFUG00015021959)	HYI (ENSNFUG00015021903)	ptprfa (ENSNFUG00015017023)	KDM4A (ENSNFUG00015016697)	RAD54L (ENSNFUG00015016422)	LRRC41 (ENSNFUG00015016406)	ARHGAP39 (ENSNFUG00015016394)	ENSNFUG00015016391	EPS15L1A (ENSNFUG00015013696)	DOHH (ENSNFUG00015013572)	cherp (ENSNFUG00015013209)	ENSNFUG00015013179	AKR1A1B (ENSNFUG00015013149)	UHMK1 (ENSNFUG00015013126)	ENSNFUG00015015412	ENSNFUG00015015144 ##22	ENSNFUG00015015092	ENSNFUG00015015084	ENSNFUG00015015077	ENSNFUG00015015069	nlgn1 (ENSNFUG00015015041)	ENSNFUG00015015032	ENSNFUG00015015024	ENSNFUG00015015020	ENSNFUG00015015015	ENSNFUG00015015007	ect2 (ENSNFUG00015012857)	ENSNFUG00015012701	ENSNFUG00015012697	b3gnt5a (ENSNFUG00015012692)	ENSNFUG00015010416
Oryzias	ANCESTRAL SPECIES	5	ENSGT00390000000288	ENSGT00390000002659	ENSGT00940000163309	ENSGT00390000011838	ENSGT00940000163762.a.b	ENSGT00940000154327.b.f	ENSGT00940000160740	ENSGT00940000156073.c.b	ENSGT00940000161304.a.a	ENSGT00390000002505	ENSGT00940000156539	ENSGT00940000178684	ENSGT00940000157769	ENSGT00950000183111.b.a.b	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00940000160836.d.a	ENSGT00940000160836.d.b.a.a	ENSGT00940000160836.d.b.b	ENSGT00940000160836.d.b.a.b.f.b	ENSGT00940000160907.k	ENSGT00940000164279.b	ENSGT00940000162061.a.a	ENSGT00410000029447	ENSGT01060000248544.a.a.b.a.b	ENSGT00950000182951.B	ENSGT00940000154079.a	ENSGT00940000155091.eb.a	ENSGT00390000004835
Oryzias_b	ANCESTRAL SPECIES	26	ENSGT00390000000288	ENSGT00390000002659	ENSGT00940000163309	ENSGT00390000011838	ENSGT00940000163762.a.b	ENSGT01100000263552.f.b.f.b	ENSGT00940000154327.b.f	ENSGT00940000160740	ENSGT00940000156073.c.b	ENSGT00940000161304.a.a	ENSGT00390000002505	ENSGT00940000156539	ENSGT00940000157769	ENSGT00950000183111.b.a.b	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000178259	ENSGT00940000155789	ENSGT00940000160836.d.a	ENSGT00940000160836.d.b.a.a	ENSGT00940000160836.d.b.b	ENSGT00940000160836.d.b.a.b.f.b	ENSGT00940000160907.k	ENSGT00940000164279.b	ENSGT00940000162061.a.a	ENSGT00410000029447	ENSGT01060000248544.a.a.b.a.b	ENSGT00950000182951.B	ENSGT00940000155091.eb.a	ENSGT00940000154079.a
Indian medaka	MODERN SPECIES	13	tmco1 (ENSOMEG00000001589)	aldh9a1a.1 (ENSOMEG00000001600)	med8 (ENSOMEG00000001606)	pbx1b (ENSOMEG00000001614)	ENSOMEG00000001618	ENSOMEG00000001622	scp2b (ENSOMEG00000001629)	PODN (ENSOMEG00000001636)	slc1a7b (ENSOMEG00000001647)	SHISAL2A (ENSOMEG00000001651)	ENSOMEG00000001666	akr1a1b (ENSOMEG00000001676)	mep1ba (ENSOMEG00000001686)	uhmk1 (ENSOMEG00000001693)	ENSOMEG00000001699	ENSOMEG00000001708 ##22	ENSOMEG00000001719	ENSOMEG00000001724	nlgn1 (ENSOMEG00000001727)	ENSOMEG00000001731	si:dkey-239i20.2 (ENSOMEG00000001737)	ENSOMEG00000001744	si:dkey-239i20.4 (ENSOMEG00000001750)	ENSOMEG00000001757	plpp6 (ENSOMEG00000001761)	prdx6 (ENSOMEG00000001764)	jun (ENSOMEG00000001040)	si:dkey-86e18.1 (ENSOMEG00000001778)	faslg (ENSOMEG00000001780)	fam20b (ENSOMEG00000001788)	angptl1a (ENSOMEG00000001794)
Javanese ricefish	MODERN SPECIES	18	cpt2 (ENSOJAG00000001549)	magoh (ENSOJAG00000001552)	aatf (ENSOJAG00000001555)	tmco1 (ENSOJAG00000001561)	aldh9a1a.1 (ENSOJAG00000001848)	med8 (ENSOJAG00000002355)	ENSOJAG00000002387	PODN (ENSOJAG00000002443)	slc1a7b (ENSOJAG00000002478)	SHISAL2A (ENSOJAG00000002518)	ENSOJAG00000002526	akr1a1b (ENSOJAG00000002555)	uhmk1 (ENSOJAG00000002650)	mep1ba (ENSOJAG00000002689)	ENSOJAG00000002728	ENSOJAG00000002742 ##22	ENSOJAG00000002774	ENSOJAG00000002810	nlgn1 (ENSOJAG00000002989)	si:dkey-239i20.2 (ENSOJAG00000004041)	ENSOJAG00000004185	si:dkey-239i20.4 (ENSOJAG00000004249)	ENSOJAG00000004383	plpp6 (ENSOJAG00000004678)	prdx6 (ENSOJAG00000004686)	jun (ENSOJAG00000004730)	si:dkey-86e18.1 (ENSOJAG00000004749)	faslg (ENSOJAG00000004754)	fam20b (ENSOJAG00000004758)	ralgps2 (ENSOJAG00000004865)	angptl1a (ENSOJAG00000006006)
Oryzias_a	ANCESTRAL SPECIES	24	ENSGT00940000163309	ENSGT00390000011838	ENSGT00940000163762.a.b	ENSGT00940000163676	ENSGT00940000177801	ENSGT00940000154327.b.f	ENSGT00940000160740	ENSGT00940000156073.c.b	ENSGT00940000161304.a.a	ENSGT00390000002505	ENSGT00940000156539	ENSGT00940000178684	ENSGT00940000157769	ENSGT00950000183111.b.a.b	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00940000160836.d.a	ENSGT00940000160836.d.b.a.a	ENSGT00940000160836.d.b.b	ENSGT00940000160836.d.b.a.b.f.b	ENSGT00940000160907.k	ENSGT00940000164279.b	ENSGT00940000162061.a.a	ENSGT00410000029447	ENSGT01060000248544.a.a.b.a.b	ENSGT00950000182951.B	ENSGT00940000154079.a	ENSGT00940000155091.eb.a	ENSGT00390000004835
Chinese medaka	MODERN SPECIES	1098		slc30a7 (ENSOSIG00000005709)	ENSOSIG00000005711	ENSOSIG00000005713	ZNF648 (ENSOSIG00000005716)	ENSOSIG00000005718	PODN (ENSOSIG00000005724)	ENSOSIG00000005729	SHISAL2A (ENSOSIG00000005730)	ENSOSIG00000005733	akr1a1b (ENSOSIG00000005742)	uhmk1 (ENSOSIG00000005761)	ENSOSIG00000005764	mep1ba (ENSOSIG00000005767)	CHCHD4 (ENSOSIG00000005775)	ENSOSIG00000005781 ##22	ENSOSIG00000005863 ##22	ENSOSIG00000005869	ENSOSIG00000005878	ENSOSIG00000005880	si:dkey-239i20.2 (ENSOSIG00000005886)	ENSOSIG00000005895	ENSOSIG00000006145	plpp6 (ENSOSIG00000006241)	prdx6 (ENSOSIG00000006242)	si:dkey-86e18.1 (ENSOSIG00000006243)	jun (ENSOSIG00000006246)	faslg (ENSOSIG00000006247)	fam20b (ENSOSIG00000006250)	ralgps2 (ENSOSIG00000006261)	angptl1a (ENSOSIG00000007944)
Japanese Medaka HdrR	MODERN SPECIES	18	tmco1 (ENSORLG00000025870)	aldh9a1a.1 (ENSORLG00000014167)	med8 (ENSORLG00000014187)	ENSORLG00000014225	ENSORLG00000022404	scp2b (ENSORLG00000029625)	PODN (ENSORLG00000014255)	slc1a7b (ENSORLG00000014274)	ENSORLG00000026316	ENSORLG00000021802	akr1a1b (ENSORLG00000014322)	uhmk1 (ENSORLG00000014340)	mep1ba (ENSORLG00000014358)	ENSORLG00000029775	ENSORLG00000014375	ENSORLG00000014398 ##22	NAALADL2 (ENSORLG00000024562)	ENSORLG00000027251	ENSORLG00000030217	ENSORLG00000028160	ENSORLG00000027481	nlgn1 (ENSORLG00000014412)	ENSORLG00000023514	si:dkey-239i20.2 (ENSORLG00000014502)	ENSORLG00000024596	si:dkey-239i20.4 (ENSORLG00000014511)	ENSORLG00000014515	plpp6 (ENSORLG00000027650)	prdx6 (ENSORLG00000014530)	jun (ENSORLG00000027558)	si:dkey-86e18.1 (ENSORLG00000028970)
Ovalentaria_B	ANCESTRAL SPECIES	8	ENSGT00390000002659	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000000288	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT00940000154327.b.f	ENSGT00940000160740	ENSGT00940000156073.c.b	ENSGT00940000161304.a.a	ENSGT00390000002505	ENSGT00940000156539	ENSGT00940000178684	ENSGT00940000157769	ENSGT00950000183111.b.a.b	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00550000074917	ENSGT00940000155981.h	ENSGT00940000156037.a.e	ENSGT00510000049120	ENSGT00940000156453.b	ENSGT00390000011620.a.a.a	ENSGT00550000074980	ENSGT00390000018402	ENSGT00390000005462
Pomacentridae	ANCESTRAL SPECIES	16	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000000288	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT00940000154327.b.f	ENSGT00940000160740	ENSGT00940000156073.c.b	ENSGT00940000161304.a.a	ENSGT00390000002505	ENSGT00940000156539	ENSGT00940000157769	ENSGT00950000183111.b.a.b	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00550000074917	ENSGT00940000155981.h
Pomacentridae_A	ANCESTRAL SPECIES		ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000000288	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT00940000154327.b.f	ENSGT00940000160740	ENSGT00940000156073.c.b	ENSGT00940000161304.a.a	ENSGT00390000002505	ENSGT00940000156539	ENSGT00940000157769	ENSGT00950000183111.b.a.b	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.a.b ##22	ENSGT00940000158512.a.k	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00550000074917	ENSGT00940000155981.h	ENSGT00940000156037.a.e	ENSGT00510000049120	ENSGT00940000156453.b	ENSGT00390000011620.a.a.a	ENSGT00550000074980	ENSGT00390000018402
Amphiprion	ANCESTRAL SPECIES	2	ENSGT00390000011838	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000000288	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT00940000154327.b.f	ENSGT00940000160740	ENSGT00940000156073.c.b	ENSGT00940000161304.a.a	ENSGT00390000002505	ENSGT00940000156539	ENSGT00940000157769	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.a.b ##22	ENSGT00940000158512.a.k	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00550000074917	ENSGT00940000155981.h	ENSGT00940000156037.a.e	ENSGT00510000049120	ENSGT00940000156453.b	ENSGT00390000011620.a.a.a	ENSGT00550000074980	ENSGT00390000018402
Orange clownfish	MODERN SPECIES	11	aldh9a1a.1 (ENSAPEG00000023472)	tmco1 (ENSAPEG00000023463)	uck2a (ENSAPEG00000023432)	aatf (ENSAPEG00000023422)	magoh (ENSAPEG00000023401)	cpt2 (ENSAPEG00000023387)	scp2b (ENSAPEG00000023367)	PODN (ENSAPEG00000023307)	slc1a7b (ENSAPEG00000023281)	SHISAL2A (ENSAPEG00000023276)	ENSAPEG00000023268	akr1a1b (ENSAPEG00000023243)	uhmk1 (ENSAPEG00000023193)	ENSAPEG00000023164	ENSAPEG00000023132	ENSAPEG00000023086 ##22	ENSAPEG00000023019	ENSAPEG00000023012	NAALADL2 (ENSAPEG00000022988)	nlgn1 (ENSAPEG00000022920)	ENSAPEG00000022902	ect2 (ENSAPEG00000022667)	ENSAPEG00000022621	b3gnt5a (ENSAPEG00000022611)	MCF2L2 (ENSAPEG00000022398)	ENSAPEG00000022377	rfc4 (ENSAPEG00000022344)	cdh2 (ENSAPEG00000022295)	aqp4 (ENSAPEG00000022269)	ENSAPEG00000022261	ENSAPEG00000022236
Clown anemonefish	MODERN SPECIES	2665															ENSAOCG00000021383	ENSAOCG00000021335 ##22
Spiny chromis	MODERN SPECIES	4	aldh9a1a.1 (ENSAPOG00000016032)	tmco1 (ENSAPOG00000016041)	aatf (ENSAPOG00000016052)	uck2a (ENSAPOG00000016090)	magoh (ENSAPOG00000016124)	cpt2 (ENSAPOG00000016151)	scp2b (ENSAPOG00000016166)	PODN (ENSAPOG00000016186)	slc1a7b (ENSAPOG00000016232)	SHISAL2A (ENSAPOG00000016256)	ENSAPOG00000016262	akr1a1b (ENSAPOG00000016274)	uhmk1 (ENSAPOG00000016327)	mep1ba (ENSAPOG00000016378)	ENSAPOG00000016386	ENSAPOG00000016466 ##22	ENSAPOG00000016485	ENSAPOG00000016650	ENSAPOG00000016668
Bicolor damselfish	DUPLICATION
Bicolor damselfish	MODERN SPECIES	102																ENSSPAG00000020195 ##22
Bicolor damselfish	MODERN SPECIES	106																ENSSPAG00000020352 ##22
Cichlidae	ANCESTRAL SPECIES	36	ENSGT00390000002659	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000000288	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT00940000154327.b.f	ENSGT00940000160740	ENSGT00940000156073.c.b	ENSGT00940000161304.a.a	ENSGT00390000002505	ENSGT00940000156539	ENSGT00940000178684	ENSGT00940000157769	ENSGT00950000183111.b.a.b	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00940000156299	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00550000074917
Pseudocrenilabrinae	ANCESTRAL SPECIES	10	ENSGT00390000002659	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000000288	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT00940000154327.b.f	ENSGT00940000160740	ENSGT00940000156073.c.b	ENSGT00940000161304.a.a	ENSGT00390000002505	ENSGT00940000156539	ENSGT00940000178684	ENSGT00940000157769	ENSGT00950000183111.b.a.b	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00940000156299	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00550000074917	ENSGT01100000263513.a.a.b.b.b.b.b.a.b.b	ENSGT01100000263502.A.a.a.a.b.a.b	ENSGT00390000001663.m.a.b	ENSGT00390000007225	ENSGT00940000164897.a.b.a	ENSGT00940000158239.a.b	ENSGT00940000159606	ENSGT00390000005581.a	ENSGT00940000159169.o
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	16	ENSGT00390000002659	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000000288	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT00940000154327.b.f	ENSGT00940000160740	ENSGT00940000156073.c.b	ENSGT00940000161304.a.a	ENSGT00390000002505	ENSGT00940000156539.y	ENSGT00940000178684	ENSGT00940000157769	ENSGT00950000183111.b.a.b	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00940000156299	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00550000074917	ENSGT01100000263513.a.a.b.b.b.b.b.a.b.b	ENSGT01100000263502.A.a.a.a.b.a.b	ENSGT00390000001663.m.a.b	ENSGT00390000007225	ENSGT00940000164897.a.b.a	ENSGT00940000158239.a.b	ENSGT00940000159606	ENSGT00390000005581.a	ENSGT00940000159169.o
Haplochromini	ANCESTRAL SPECIES	16	ENSGT00390000000288	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT00940000154327.b.f	ENSGT00940000160740	ENSGT00940000176997.a.a.b.b	ENSGT00940000156073.c.b	ENSGT00940000161304.a.a	ENSGT00390000002505	ENSGT00940000156539.y	ENSGT00940000178684	ENSGT00940000157769	ENSGT00950000183111.b.a.b	ENSGT00390000014380.h.b.b.i.b.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00940000156299	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00550000074917	ENSGT00950000183126.a.p.a.p.a.b	ENSGT00950000183126.a.p.a.p.a.a.a
Haplochromini_A	ANCESTRAL SPECIES	15	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000000288	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT00940000154327.b.f	ENSGT00940000160740	ENSGT00940000176997.a.a.b.b	ENSGT00940000156073.c.b	ENSGT00940000161304.a.a	ENSGT00390000002505	ENSGT00940000156539.y	ENSGT00940000157769	ENSGT00950000183111.b.a.b	ENSGT00390000014380.h.b.b.i.b.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00940000170955.c	ENSGT00940000156299	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00550000074917	ENSGT00940000176853.B.d.a	ENSGT00950000183126.a.p.a.p.a.b	ENSGT00950000183126.a.p.a.p.a.a.a	ENSGT00940000176853.B.d.b	ENSGT00940000176853.B.c.b
Haplochromini_B	ANCESTRAL SPECIES	10	ENSGT00390000002659	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000000288	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT00940000154327.b.f	ENSGT00940000160740	ENSGT00940000176997.a.a.b.b	ENSGT00940000156073.c.b	ENSGT00940000161304.a.a	ENSGT00390000002505	ENSGT00940000156539.y	ENSGT00940000157769	ENSGT00950000183111.b.a.b	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00940000170955.c	ENSGT00940000156299	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00550000074917	ENSGT00940000176853.B.d.a	ENSGT00950000183126.a.p.a.p.a.b	ENSGT00950000183126.a.p.a.p.a.a.a	ENSGT00940000176853.B.d.b	ENSGT00940000176853.B.c.b
Eastern happy	MODERN SPECIES	14	uck2a (ENSACLG00000026961)	aatf (ENSACLG00000026969)	cpt2 (ENSACLG00000026971)	magoh (ENSACLG00000026978)	scp2b (ENSACLG00000026985)	PODN (ENSACLG00000027000)	ENSACLG00000027026	slc1a7b (ENSACLG00000027035)	ENSACLG00000027056	SHISAL2A (ENSACLG00000027060)	ENSACLG00000027071	akr1a1b (ENSACLG00000027078)	uhmk1 (ENSACLG00000027096)	MEP1B (ENSACLG00000027103)	ENSACLG00000027119	ENSACLG00000027141 ##22	NAALADL2 (ENSACLG00000027187)	ENSACLG00000027197	ENSACLG00000027252	nlgn1 (ENSACLG00000000999)	ENSACLG00000001096	ENSACLG00000001206	ect2 (ENSACLG00000001221)	ENSACLG00000001304	b3gnt5a (ENSACLG00000001344)	rfc4 (ENSACLG00000001349)	ENSACLG00000001397	ENSACLG00000001417	ENSACLG00000001432	ENSACLG00000001494	ENSACLG00000001533
Zebra mbuna	MODERN SPECIES	89														ENSMZEG00005023582	ENSMZEG00005023583	ENSMZEG00005023586 ##22
P. nyererei	MODERN SPECIES	318	aldh9a1a.1 (ENSPNYG00000021762)	tmco1 (ENSPNYG00000021786)	uck2a (ENSPNYG00000021798)	aatf (ENSPNYG00000021809)	magoh (ENSPNYG00000021829)	cpt2 (ENSPNYG00000021819)	scp2b (ENSPNYG00000021843)	PODN (ENSPNYG00000021860)	slc1a7b (ENSPNYG00000021878)	SHISAL2A (ENSPNYG00000021886)	akr1a1b (ENSPNYG00000021893)	uhmk1 (ENSPNYG00000021906)	mep1ba (ENSPNYG00000021927)	ENSPNYG00000021978	ENSPNYG00000022077	ENSPNYG00000022107 ##22	ENSPNYG00000022121	nlgn1 (ENSPNYG00000022138)
Burton s mouthbrooder	MODERN SPECIES	520														ENSHBUG00000003709	ENSHBUG00000003546	ENSHBUG00000003525 ##22	NAALADL2 (ENSHBUG00000003487)	nlgn1 (ENSHBUG00000003467)
Lyretail cichlid	MODERN SPECIES	376													ENSNBRG00000011334	ENSNBRG00000011343	ENSNBRG00000011360	ENSNBRG00000011412 ##22	ENSNBRG00000011440	NAALADL2 (ENSNBRG00000011456)	ENSNBRG00000011508	nlgn1 (ENSNBRG00000011573)	ect2 (ENSNBRG00000011603)	ENSNBRG00000011659	b3gnt5a (ENSNBRG00000011825)	ENSNBRG00000011833	rfc4 (ENSNBRG00000011864)	ENSNBRG00000011949	ENSNBRG00000011989	ENSNBRG00000012010	ENSNBRG00000012019	ENSNBRG00000012040	ENSNBRG00000012084
Nile tilapia	MODERN SPECIES	14	aldh9a1a.1 (ENSONIG00000019226)	tmco1 (ENSONIG00000041289)	uck2a (ENSONIG00000019225)	aatf (ENSONIG00000021189)	magoh (ENSONIG00000019224)	cpt2 (ENSONIG00000019221)	scp2b (ENSONIG00000032097)	PODN (ENSONIG00000019220)	slc1a7b (ENSONIG00000019216)	SHISAL2A (ENSONIG00000028137)	ENSONIG00000019213	akr1a1b (ENSONIG00000019210)	uhmk1 (ENSONIG00000019209)	mep1ba (ENSONIG00000019207)	ENSONIG00000030541	ENSONIG00000019205 ##22	NAALADL2 (ENSONIG00000019204)	nlgn1 (ENSONIG00000029648)	ect2 (ENSONIG00000019196)	b3gnt5a (ENSONIG00000021188)	ENSONIG00000019195	rfc4 (ENSONIG00000019192)	ENSONIG00000037060	ENSONIG00000042553	ENSONIG00000038697	ENSONIG00000033562	ENSONIG00000019190	ENSONIG00000028785	ENSONIG00000019189	ENSONIG00000036367	ENSONIG00000028604
Midas cichlid	MODERN SPECIES	134								scp2b (ENSACIG00000010251)	PODN (ENSACIG00000010219)	slc1a7b (ENSACIG00000010191)	ENSACIG00000010174	akr1a1b (ENSACIG00000010155)	uhmk1 (ENSACIG00000010132)	mep1ba (ENSACIG00000010102)	ENSACIG00000010061	ENSACIG00000010022 ##22	ENSACIG00000009974
Pinecone sodierfish	MODERN SPECIES	18	ENSMMDG00005021766	TAF4B (ENSMMDG00005021761)	DDX10 (ENSMMDG00005021736)	ENSMMDG00005021727	hyi (ENSMMDG00005021718)	ptprfa (ENSMMDG00005021676)	ENSMMDG00005021620	st3gal3a (ENSMMDG00005021615)	rad54l (ENSMMDG00005021382)	ENSMMDG00005021356	ARHGAP39 (ENSMMDG00005021351)	MEP1B (ENSMMDG00005021343)	mep1ba (ENSMMDG00005021337)	MEP1B (ENSMMDG00005021333)	ENSMMDG00005021332	ENSMMDG00005021297 ##22	ENSMMDG00005021291	NAALADL2 (ENSMMDG00005021284)	nlgn1 (ENSMMDG00005021277)	SPATA16 (ENSMMDG00005021273)	ect2 (ENSMMDG00005021208)	b3gnt5a (ENSMMDG00005021189)	MCF2L2 (ENSMMDG00005020421)	rfc4 (ENSMMDG00005020333)	ENSMMDG00005020329	cherp (ENSMMDG00005019968)	AP1M1 (ENSMMDG00005019655)	klf2a (ENSMMDG00005019644)	EPS15L1 (ENSMMDG00005019641)	rad23ab (ENSMMDG00005019636)	ENSMMDG00005019633
Cod	MODERN SPECIES	3	ENSGMOG00000008598	ENSGMOG00000016351	b3gnt5a (ENSGMOG00000027060)	ect2 (ENSGMOG00000012674)	nlgn1 (ENSGMOG00000006291)	ENSGMOG00000032790	ENSGMOG00000036245	ENSGMOG00000032827	ENSGMOG00000027611	ENSGMOG00000036634	ENSGMOG00000029318	NAALADL2 (ENSGMOG00000033608)	ENSGMOG00000034887	ENSGMOG00000013578	ENSGMOG00000034640	ENSGMOG00000017718 ##22	ENSGMOG00000017738	ENSGMOG00000002087	ENSGMOG00000028574	ENSGMOG00000029420	ENSGMOG00000001071	ENSGMOG00000027434	mcm3l (ENSGMOG00000016488)	ENSGMOG00000004169	ENSGMOG00000003154	ENSGMOG00000016645	ENSGMOG00000016633	ENSGMOG00000033138	ENSGMOG00000015105	ENSGMOG00000029535	PDE4B (ENSGMOG00000006501)
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000153421.a.a.b ##22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000153421.a.a.b ##22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00940000153421.a.a.b ##22
Actinopterygii	ANCESTRAL SPECIES	10	ENSGT00940000159265	ENSGT00940000164867	ENSGT00950000183070.a.a.mb.b	ENSGT00390000000263	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b	ENSGT00940000153421.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000159676	ENSGT00940000161734	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182899.C.a	ENSGT00940000156941	ENSGT00940000154552	ENSGT00940000156162.C	ENSGT00940000160614	ENSGT00940000154384
Reedfish	MODERN SPECIES	10	phb2b (ENSECRG00000008081)	pde6d (ENSECRG00000008114)	ENSECRG00000008130	ENSECRG00000008135	PEX5L (ENSECRG00000008160)	ENSECRG00000011258	ndufb5 (ENSECRG00000011270)	mrpl47 (ENSECRG00000011293)	actl6a (ENSECRG00000011329)	GNB4 (ENSECRG00000011379)	MFN1 (ENSECRG00000011447)	KCNMB3 (ENSECRG00000011514)	PIK3CA (ENSECRG00000011540)	ZMAT3 (ENSECRG00000011580)	kcnmb2 (ENSECRG00000011622)	tbl1xr1a (ENSECRG00000011681) ##22	ENSECRG00000011747	NAALADL2 (ENSECRG00000011757)	NLGN1 (ENSECRG00000011771)	ENSECRG00000011785	SPATA16 (ENSECRG00000011817)	ect2 (ENSECRG00000011854)	MCF2L2 (ENSECRG00000011952)	b3gnt5a (ENSECRG00000011979)	rfc4 (ENSECRG00000011992)	eif4a2 (ENSECRG00000012026)	ENSECRG00000012094	ENSECRG00000012114	mccc1 (ENSECRG00000012124)	ENSECRG00000012146	dcun1d1 (ENSECRG00000012170)
Neopterygii	ANCESTRAL SPECIES	17	ENSGT00940000164867.a	ENSGT00980000198724	ENSGT00950000183070.a.a.mb.a	ENSGT00390000000263	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b	ENSGT00940000153421.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000159676	ENSGT00940000161734	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182899.C.a	ENSGT00940000156941	ENSGT00940000154552	ENSGT00940000156162.C	ENSGT00940000160614	ENSGT00940000154384
Spotted gar	MODERN SPECIES	652	ENSLOCG00000001427	ptmaa (ENSLOCG00000001413)	PHB2 (ENSLOCG00000001389)	pde6d (ENSLOCG00000001371)	PEX5L (ENSLOCG00000001351)	usp13 (ENSLOCG00000001321)	ndufb5 (ENSLOCG00000001304)	mrpl47 (ENSLOCG00000001289)	actl6a (ENSLOCG00000001256)	gnb4b (ENSLOCG00000001216)	mfn1b (ENSLOCG00000001195)	KCNMB3 (ENSLOCG00000001177)	PIK3CA (ENSLOCG00000001119)	ZMAT3 (ENSLOCG00000001108)	kcnmb2 (ENSLOCG00000001089)	ENSLOCG00000001063 ##22	NAALADL2 (ENSLOCG00000001022)	nlgn1 (ENSLOCG00000000991)	SPATA16 (ENSLOCG00000000975)	ect2 (ENSLOCG00000000941)	b3gnt5a (ENSLOCG00000017371)	ENSLOCG00000000896	rfc4 (ENSLOCG00000000876)	eif4a2 (ENSLOCG00000000847)	ENSLOCG00000000828	ENSLOCG00000000806	mccc1 (ENSLOCG00000000778)	ENSLOCG00000000758	dcun1d1 (ENSLOCG00000000735)	ATP11B (ENSLOCG00000000659)	sox2 (ENSLOCG00000017346)
Osteoglossocephalai	ANCESTRAL SPECIES	234													ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182899.C.a	ENSGT00940000156941	ENSGT00940000154552	ENSGT00940000156162.C	ENSGT00940000160614	ENSGT00940000154384
Clupeocephala	ANCESTRAL SPECIES	164													ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00550000074917	ENSGT00940000153783.b.b.c.b	ENSGT00940000169190	ENSGT00940000156941	ENSGT00940000156162.C	ENSGT00940000160614	ENSGT00940000154384	ENSGT00950000183189.a.b.a	ENSGT00390000013701
Otomorpha	ANCESTRAL SPECIES	134													ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00950000182930.B	ENSGT00950000182899.C.a	ENSGT00550000074917	ENSGT00940000153783.b.b.c.b	ENSGT00940000169190	ENSGT00940000156941	ENSGT00940000156162.C	ENSGT00940000160614	ENSGT00940000154384
Clupeiformes	ANCESTRAL SPECIES	13	ENSGT00940000155542.a	ENSGT00940000153947.B	ENSGT00940000157568	ENSGT00940000158648	ENSGT00940000157092	ENSGT00940000154568	ENSGT00940000158755	ENSGT00730000111209	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981	ENSGT00940000156209	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00550000074917	ENSGT00940000153783.b.b.d	ENSGT00950000182930.B	ENSGT00950000182899.C.a	ENSGT00940000156941	ENSGT00940000156162.C	ENSGT00940000154384	ENSGT00950000183189.a.b.a	ENSGT00390000013701
Atlantic herring	MODERN SPECIES	1	ENSCHAG00000025583	CACHD1 (ENSCHAG00000025608)	ENSCHAG00000025843	jak1 (ENSCHAG00000001469)	ak4 (ENSCHAG00000006259)	DNAJC6 (ENSCHAG00000006306)	lepr (ENSCHAG00000006835)	PDE4B (ENSCHAG00000007355)	ENSCHAG00000008011	SGIP1 (ENSCHAG00000008030)	ENSCHAG00000008117	dnai4 (ENSCHAG00000008129)	PIK3CA (ENSCHAG00000008193)	ZMAT3 (ENSCHAG00000008238)	ENSCHAG00000008270	tbl1xr1a (ENSCHAG00000008316) ##22	NAALADL2 (ENSCHAG00000008777)	nlgn1 (ENSCHAG00000008823)	SPATA16 (ENSCHAG00000009031)	ect2 (ENSCHAG00000009113)	MCF2L2 (ENSCHAG00000011010)	b3gnt5a (ENSCHAG00000013728)	rfc4 (ENSCHAG00000013734)	eif4a2 (ENSCHAG00000013854)	ENSCHAG00000014316	ENSCHAG00000014326	mccc1 (ENSCHAG00000014442)	ATP11B (ENSCHAG00000017464)	dnajc19 (ENSCHAG00000019857)	fxr1 (ENSCHAG00000019921)	ttc14 (ENSCHAG00000020170)
Denticle herring	MODERN SPECIES	4	efcab7 (ENSDCDG00000033215)	pgm1 (ENSDCDG00000033253)	ROR1 (ENSDCDG00000033263)	CACHD1 (ENSDCDG00000033270)	RAVER2 (ENSDCDG00000033278)	jak1 (ENSDCDG00000033348)	ak4 (ENSDCDG00000034327)	DNAJC6 (ENSDCDG00000034333)	lepr (ENSDCDG00000034343)	PDE4B (ENSDCDG00000034434)	SGIP1 (ENSDCDG00000035047)	dnai4 (ENSDCDG00000035050)	PIK3CA (ENSDCDG00000035054)	ZMAT3 (ENSDCDG00000035057)	ENSDCDG00000035062	tbl1xr1a (ENSDCDG00000035070) ##22	NAALADL2 (ENSDCDG00000035081)	nlgn1 (ENSDCDG00000035089)	ect2 (ENSDCDG00000035162)	ENSDCDG00000035290	b3gnt5a (ENSDCDG00000035305)	rfc4 (ENSDCDG00000035307)	eif4a2 (ENSDCDG00000035345)	ENSDCDG00000035443	ENSDCDG00000035446	mccc1 (ENSDCDG00000035532)	ATP11B (ENSDCDG00000035773)	dnajc19 (ENSDCDG00000035794)	fxr1 (ENSDCDG00000035796)	ttc14 (ENSDCDG00000035805)	ENSDCDG00000035811
Otophysi	ANCESTRAL SPECIES	305						ENSGT00940000162889	ENSGT00940000155941.A	ENSGT00390000018718	ENSGT00940000156442	ENSGT01030000234960	ENSGT00940000161593.b	ENSGT00940000158154	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000161734	ENSGT00940000159676.a
Characiphysae	ANCESTRAL SPECIES	117	ENSGT00940000155521.a.a	ENSGT00390000015484.i	ENSGT01050000244840.A.b.a	ENSGT00940000157465.y	ENSGT00940000159253	ENSGT00390000008593.a	ENSGT00940000155941.A	ENSGT00390000018718	ENSGT00940000156442	ENSGT01030000234960	ENSGT00940000161593.b	ENSGT00940000158154	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789.h	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00390000003197	ENSGT00940000156309.A.l	ENSGT00440000033720.b	ENSGT00950000182930.D	ENSGT00950000182930.C.f	ENSGT00950000182930.A.b.k.a	ENSGT00950000182930.A.b.k.b	ENSGT00390000015458	ENSGT00940000155866
Characiphysae_b	ANCESTRAL SPECIES	125	ENSGT00940000155521.a.a	ENSGT00390000015484.i	ENSGT01050000244840.A.b.a	ENSGT00940000157465.y	ENSGT00940000159253	ENSGT00390000008593.a	ENSGT00940000155941.A	ENSGT00390000018718	ENSGT00940000156442	ENSGT01030000234960	ENSGT00940000161593.b	ENSGT00940000158154	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789.h	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00950000183118.A.c.a	ENSGT00390000003197	ENSGT00940000156309.A.l	ENSGT00440000033720.b	ENSGT00950000182930.D	ENSGT00950000182930.C.f	ENSGT00950000182930.A.b.k.a	ENSGT00950000182930.A.b.k.b	ENSGT00390000015458
Characoidei	ANCESTRAL SPECIES	264	ENSGT00940000155521.a.a	ENSGT00390000015484.i	ENSGT01050000244840.A.b.a	ENSGT00940000157465.y	ENSGT00940000159253	ENSGT00390000008593.a	ENSGT00940000155941.A	ENSGT00390000018718	ENSGT00940000156442	ENSGT01030000234960	ENSGT00940000161593.b	ENSGT00940000158154	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.b ##22
Mexicana tetra	MODERN SPECIES	20	PSMD13 (ENSAMXG00000029773)	ENSAMXG00000007146	ZNF319 (ENSAMXG00000025761)	csnk2a2a (ENSAMXG00000007124)	isl2b (ENSAMXG00000015032)	nmbb (ENSAMXG00000036171)	tmed3 (ENSAMXG00000030400)	ZNF710 (ENSAMXG00000036333)	RCN1 (ENSAMXG00000036657)	tmem208 (ENSAMXG00000009728)	armh3 (ENSAMXG00000009749)	PIK3CA (ENSAMXG00000009771)	ZMAT3 (ENSAMXG00000009798)	ENSAMXG00000031600	ENSAMXG00000030485	tbl1xr1a (ENSAMXG00000019119) ##22	ENSAMXG00000038909	srsf7b (ENSAMXG00000007005)	GEMIN6 (ENSAMXG00000006993)	sos1 (ENSAMXG00000006975)	rfc4 (ENSAMXG00000006955)	plaat1 (ENSAMXG00000029020)	ankrd13c (ENSAMXG00000035740)	srsf11 (ENSAMXG00000006919)	SIRT7 (ENSAMXG00000006892)	rbbp9 (ENSAMXG00000030493)	ENSAMXG00000033371	tdrd3 (ENSAMXG00000006847)	PCDH20 (ENSAMXG00000040452)	EML6 (ENSAMXG00000006744)	ENSAMXG00000042880
Red-bellied piranha	MODERN SPECIES	61	ENSPNAG00000015163	zgc:162816 (ENSPNAG00000015195)	COL6A2 (ENSPNAG00000015213)	COL6A1 (ENSPNAG00000003380)	tdo2b (ENSPNAG00000015365)	ATP13A3 (ENSPNAG00000015470)	tmem44 (ENSPNAG00000015489)	lsg1 (ENSPNAG00000015533)	ENSPNAG00000003396	fam43a (ENSPNAG00000015564)	XXYLT1 (ENSPNAG00000015575)	PIK3CA (ENSPNAG00000015621)	ENSPNAG00000015635	ZMAT3 (ENSPNAG00000015664)	ENSPNAG00000015688	tbl1xr1a (ENSPNAG00000015715) ##22	TAFA5 (ENSPNAG00000015731)	ENSPNAG00000015804	api5 (ENSPNAG00000015863)	hsd17b12a (ENSPNAG00000015898)	alkbh3 (ENSPNAG00000015943)	si:ch1073-281m9.1 (ENSPNAG00000015960)	ENSPNAG00000015987	RFWD3 (ENSPNAG00000015999)	GLG1 (ENSPNAG00000006242)	ENSPNAG00000016183	urahb (ENSPNAG00000016199)	ENSPNAG00000003413	ENSPNAG00000016275	ENSPNAG00000006184	nfat5a (ENSPNAG00000016335)
Electric eel	MODERN SPECIES	23												XXYLT1 (ENSEEEG00000023742)	PIK3CA (ENSEEEG00000023753)	ZMAT3 (ENSEEEG00000023792)	KCNMB1 (ENSEEEG00000023794)	tbl1xr1a (ENSEEEG00000023798) ##22	ENSEEEG00000023815	NAALADL2 (ENSEEEG00000023816)	nlgn1 (ENSEEEG00000023818)	SPATA16 (ENSEEEG00000023820)	ENSEEEG00000023821	ect2 (ENSEEEG00000023822)	ENSEEEG00000023824	b3gnt5a (ENSEEEG00000023826)	PHKA2 (ENSEEEG00000023834)	ncbp2 (ENSEEEG00000023866)	senp5 (ENSEEEG00000023867)	anos1b (ENSEEEG00000023869)	si:ch211-262h13.5 (ENSEEEG00000023872)	ahsg1 (ENSEEEG00000023876)	ENSEEEG00000023879
Channel catfish	MODERN SPECIES	1	vtg3 (ENSIPUG00000003897)	Eltd1 (ENSIPUG00000003708)	adgrl2 (ENSIPUG00000003548)	ttll7 (ENSIPUG00000003411)	prkacb (ENSIPUG00000003317)	SAMD13 (ENSIPUG00000003300)	uox (ENSIPUG00000003262)	DNASE2B (ENSIPUG00000003238)	rpf1 (ENSIPUG00000003197)	CTBS (ENSIPUG00000003164)	ENSIPUG00000003155	ENSIPUG00000003137	pik3ca (ENSIPUG00000003075)	zmat3 (ENSIPUG00000003043)	kcnmb2 (ENSIPUG00000003023)	tbl1xr1 (ENSIPUG00000002968) ##22	NAALADL2 (ENSIPUG00000002923)	nlgn1 (ENSIPUG00000002896)	SPATA16 (ENSIPUG00000002870)	ect2 (ENSIPUG00000002773)	b3gnt5a (ENSIPUG00000002742)	ENSIPUG00000002731	MCF2L2 (ENSIPUG00000002639)	ENSIPUG00000002606	senp5 (ENSIPUG00000002594)	KAL1 (ENSIPUG00000002572)	si:ch211-262h13.5 (ENSIPUG00000002560)	ENSIPUG00000002551	ENSIPUG00000002538	si:ch211-284e20.8 (ENSIPUG00000002525)	FETUB (ENSIPUG00000002515)
Cyprinoidei	ANCESTRAL SPECIES	68															ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156972.d	ENSGT00940000156994	ENSGT00730000111116	ENSGT00940000156082.a.b	ENSGT01100000263555.a.a.a	ENSGT01050000244842.a.b.b.a.a.b	ENSGT01050000244842.a.b.b.a.a.a	ENSGT00940000157057.e	ENSGT00390000013639
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	374	ENSGT00940000157392.o.b.c	ENSGT00550000074831.k.b	ENSGT00390000010697.d	ENSGT00940000156493.d	ENSGT00940000155644.b.a.a.a	ENSGT00940000162607.b.b	ENSGT00390000010170.a.a.c	ENSGT00940000158653.q	ENSGT00940000158502.d	ENSGT00550000074950.c	ENSGT00940000155864.a.b.g	ENSGT00390000018439.b	ENSGT00390000008947.d	ENSGT00390000016233.f.a.b	ENSGT00950000183039.B.b.c.b	ENSGT00940000153421.a.a.b.a ##22	ENSGT01030000234598.a.b.b	ENSGT00940000155789.i	ENSGT00390000015332.b	ENSGT00940000156299.ab	ENSGT00940000159676.a.a	ENSGT00940000161734.m.b
Goldfish	MODERN SPECIES	2	rhol (ENSCARG00000066229)	ADAMTS9 (ENSCARG00000066277)	prickle2b (ENSCARG00000066624)	slc2a9l1 (ENSCARG00000066650)	psmd6 (ENSCARG00000066657)	wdr18 (ENSCARG00000066669)	ENSCARG00000066675	si:ch211-1a19.2 (ENSCARG00000066680)	LRIG1 (ENSCARG00000066715)	slc25a26 (ENSCARG00000067144)	rab7a (ENSCARG00000067216)	hmces (ENSCARG00000067270)	tada3l (ENSCARG00000067281)	arpc4l (ENSCARG00000067293)	ENSCARG00000067305	tbl1xr1a (ENSCARG00000067314) ##22	tada3l (ENSCARG00000067338)	arpc4l (ENSCARG00000067348)	ENSCARG00000067366	lgsn (ENSCARG00000067372)	myom2a (ENSCARG00000067424)	LY75 (ENSCARG00000067714)	ENSCARG00000068225	ITGB6 (ENSCARG00000068311)	nlgn1 (ENSCARG00000068331)	ENSCARG00000068341	kbtbd8 (ENSCARG00000068362)	suclg2 (ENSCARG00000068395)	TAFA1 (ENSCARG00000068763)	tafa4b (ENSCARG00000068766)	EOGT (ENSCARG00000001980)
Cyprininae_a	ANCESTRAL SPECIES	3	ENSGT00940000157392.o.b.c	ENSGT00550000074831.k.b	ENSGT00390000010697.d	ENSGT00940000156493.d	ENSGT00940000155644.b.a.a.a	ENSGT00940000162607.b.b	ENSGT00390000010170.a.a.c	ENSGT00940000158653.q	ENSGT00940000158502.d	ENSGT00550000074950.c	ENSGT00940000155864.a.b.g	ENSGT00390000018439.b	ENSGT00390000008947.d	ENSGT00390000016233.f.a.b	ENSGT00950000183039.B.b.c.b	ENSGT00940000153421.a.a.b.a ##22	ENSGT01030000234598.a.b.b	ENSGT00940000155789.i	ENSGT00390000015332.b	ENSGT00940000156299.ab	ENSGT00940000159676.a.a	ENSGT00940000161734.m.b	ENSGT00940000156972.d.d	ENSGT00940000156994.i.b	ENSGT00730000111116.c	ENSGT00940000156082.a.b.c	ENSGT01030000234555.a.a.b.a.a.a.b.a	ENSGT00940000159037.n.a	ENSGT00940000160231.h	ENSGT00940000166036.b	ENSGT00940000155528.s.a.b
Common carp reference	MODERN SPECIES	13	cishb (ENSCCRG00000042469)	uba3 (ENSCCRG00000040713)	tmf1 (ENSCCRG00000040682)	EOGT (ENSCCRG00000038591)	tafa4b (ENSCCRG00000038567)	TAFA1 (ENSCCRG00000055523)	suclg2 (ENSCCRG00000064595)	kbtbd8 (ENSCCRG00000036400)	LRIG1 (ENSCCRG00000031338)	slc25a26 (ENSCCRG00000081486)	rab7a (ENSCCRG00000034789)	hmces (ENSCCRG00000027256)	tada3l (ENSCCRG00000027248)	arpc4l (ENSCCRG00000027232)	ENSCCRG00000027217	tbl1xr1a (ENSCCRG00000015707) ##22	ENSCCRG00000060333	NAALADL2 (ENSCCRG00000014762)	nlgn1 (ENSCCRG00000071343)	SPATA16 (ENSCCRG00000044546)	ect2 (ENSCCRG00000023632)	b3gnt5a (ENSCCRG00000023764)	ENSCCRG00000058392	ENSCCRG00000032271	psmd14 (ENSCCRG00000018488)	ENSCCRG00000059900	ENSCCRG00000058881	ENSCCRG00000020060	ENSCCRG00000052338	ENSCCRG00000055514	ENSCCRG00000052347
Golden-line barbel	MODERN SPECIES	280	uba3 (ENSSGRG00000052706)	tmf1 (ENSSGRG00000052691)	EOGT (ENSSGRG00000052689)	tafa4b (ENSSGRG00000052687)	TAFA1 (ENSSGRG00000052686)	suclg2 (ENSSGRG00000052684)	kbtbd8 (ENSSGRG00000052682)	LRIG1 (ENSSGRG00000052543)	slc25a26 (ENSSGRG00000052541)	rab7a (ENSSGRG00000052540)	hmces (ENSSGRG00000052539)	ENSSGRG00000052537	tada3l (ENSSGRG00000052536)	arpc4l (ENSSGRG00000052535)	ENSSGRG00000052530	tbl1xr1a (ENSSGRG00000052100) ##22	ENSSGRG00000052091
Cyprininae	ANCESTRAL SPECIES	125															ENSGT00950000183039.B.b.c.a	ENSGT00940000153421.a.a.b.b ##22	ENSGT01030000234812.c.b	ENSGT01030000234598.a.b.a	ENSGT00940000155789.j	ENSGT00390000015332.a	ENSGT00940000156299.`b	ENSGT00940000161734.m.a	ENSGT00940000159676.a.b	ENSGT00940000156972.d.c	ENSGT00940000156994.i.a	ENSGT00730000111116.d	ENSGT00940000156082.a.b.d	ENSGT01100000263555.a.a.a.g	ENSGT01100000263555.a.a.a.h	ENSGT01050000244842.a.b.b.a.a.b	ENSGT01050000244842.a.b.b.a.a.a.j
Goldfish	MODERN SPECIES	29	TAFA1 (ENSCARG00000015945)	tafa4b (ENSCARG00000015954)	EOGT (ENSCARG00000015985)	tmf1 (ENSCARG00000016470)	uba3 (ENSCARG00000016621)	twf2b (ENSCARG00000016840)	ENSCARG00000016854	qrich1 (ENSCARG00000016859)	ENSCARG00000016891	ENSCARG00000016899	tmcc1b (ENSCARG00000016940)	ENSCARG00000016948	ENSCARG00000016956	ENSCARG00000016963	ENSCARG00000016971	tbl1xr1a (ENSCARG00000016992) ##22	NAALADL2 (ENSCARG00000017099)	ENSCARG00000017136	nlgn1 (ENSCARG00000017156)	ect2 (ENSCARG00000017311)	ENSCARG00000017797	b3gnt5a (ENSCARG00000019049)	SLC4A10 (ENSCARG00000019217)	TBR1 (ENSCARG00000026424)	psmd14 (ENSCARG00000026441)	RBMS1 (ENSCARG00000026458)	ENSCARG00000026501	ITGB6 (ENSCARG00000026566)	ENSCARG00000027017	myom2a (ENSCARG00000029663)	lgsn (ENSCARG00000030482)
Cyprininae_a	ANCESTRAL SPECIES	85	ENSGT00940000157392.o.b.d	ENSGT00550000074831.k.a	ENSGT00390000010697.c	ENSGT00940000156493.c	ENSGT00940000155644.b.a.a.b	ENSGT00940000162607.b.a	ENSGT00390000010170.a.a.d	ENSGT00940000158653.r	ENSGT00940000158502.c	ENSGT00550000074950.d	ENSGT00940000155864.a.b.h	ENSGT00390000018439.a	ENSGT00390000008947.c	ENSGT00390000016233.f.a.a	ENSGT00940000179131	ENSGT00940000153421.a.a.b.b ##22	ENSGT01030000234812.c.b	ENSGT01030000234598.a.b.a	ENSGT00940000160807	ENSGT00940000155789.j	ENSGT00390000015332.a	ENSGT00940000156299.`b	ENSGT00940000159676.a.b	ENSGT00940000161734.m.a	ENSGT00940000156972.d.c	ENSGT00940000156994.i.a	ENSGT00730000111116.d	ENSGT00940000156082.a.b.d	ENSGT01100000263555.a.a.a.g	ENSGT01050000244842.a.b.b.a.a.b	ENSGT01050000244842.a.b.b.a.a.a.i
Common carp reference	MODERN SPECIES	42	uba3 (ENSCCRG00000046141)	tmf1 (ENSCCRG00000046070)	EOGT (ENSCCRG00000042858)	tafa4b (ENSCCRG00000042785)	TAFA1 (ENSCCRG00000063403)	suclg2 (ENSCCRG00000061561)	kbtbd8 (ENSCCRG00000036688)	ENSCCRG00000058315	LRIG1 (ENSCCRG00000020318)	slc25a26 (ENSCCRG00000034778)	rab7a (ENSCCRG00000027229)	hmces (ENSCCRG00000074021)	tada3l (ENSCCRG00000027317)	arpc4l (ENSCCRG00000027321)	ENSCCRG00000027328	tbl1xr1a (ENSCCRG00000022725) ##22	ENSCCRG00000026908	NAALADL2 (ENSCCRG00000072267)	ENSCCRG00000065771	nlgn1 (ENSCCRG00000065438)	ENSCCRG00000074320	SPATA16 (ENSCCRG00000068267)	ect2 (ENSCCRG00000016506)	ENSCCRG00000023746	b3gnt5a (ENSCCRG00000075790)	b3gnt5a (ENSCCRG00000028797)	ENSCCRG00000057772	ENSCCRG00000053804	SLC4A10 (ENSCCRG00000001429)	TBR1 (ENSCCRG00000016945)	psmd14 (ENSCCRG00000016952)
Golden-line barbel	MODERN SPECIES	618						suclg2 (ENSSGRG00000034200)	ENSSGRG00000034397	kbtbd8 (ENSSGRG00000034399)	LRIG1 (ENSSGRG00000034422)	slc25a26 (ENSSGRG00000034712)	rab7a (ENSSGRG00000034717)	hmces (ENSSGRG00000034853)	tada3l (ENSSGRG00000034854)	arpc4l (ENSSGRG00000034855)	ENSSGRG00000034868	tbl1xr1a (ENSSGRG00000034886) ##22	ENSSGRG00000035328
Zebrafish	MODERN SPECIES	2	ENSDARG00000075629	vtg3 (ENSDARG00000016448)	adgrl4 (ENSDARG00000013653)	ADGRL2 (ENSDARG00000069356)	ttll7 (ENSDARG00000062973)	prkacba (ENSDARG00000001782)	samd13 (ENSDARG00000062977)	uox (ENSDARG00000007024)	DNASE2B (ENSDARG00000077918)	ENSDARG00000104195	ENSDARG00000116762	ENSDARG00000105457	ENSDARG00000115884	ENSDARG00000103910	ENSDARG00000001712	tbl1xr1a (ENSDARG00000058696) ##22	ENSDARG00000100658	nlgn1 (ENSDARG00000077710)	ect2 (ENSDARG00000007278)	ENSDARG00000079742	b3gnt5a (ENSDARG00000018971)	SLC4A10 (ENSDARG00000063133)	TBR1 (ENSDARG00000076259)	psmd14 (ENSDARG00000063100)	RBMS1 (ENSDARG00000074023)	ITGB6 (ENSDARG00000002494)	PLA2R1 (ENSDARG00000077474)	LY75 (ENSDARG00000053113)	ENSDARG00000115516	myom2a (ENSDARG00000075433)	lgsn (ENSDARG00000007715)
Euteleosteomorpha	ANCESTRAL SPECIES	244				ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00550000074917
Protacanthopterygii	ANCESTRAL SPECIES	144	ENSGT00550000075121	ENSGT01050000244939.a.a.b.a.b	ENSGT00390000016277.b	ENSGT00390000003324	ENSGT01100000263533.b.b.a.b.a.b.a.b.b	ENSGT00950000182977.B.b.a.c.a	ENSGT00940000163206.b.a.a	ENSGT00390000017571	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00550000074917
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	115		ENSGT00940000177341	ENSGT01050000244939.a.a.b.a.b.g	ENSGT00390000003324.db.b	ENSGT00940000165893	ENSGT01100000263533.b.b.a.b.a.b.a.b.a	ENSGT00940000163206.b.a.a.f	ENSGT00390000017571.m	ENSGT00940000156162.C.d	ENSGT00940000156941.c	ENSGT00950000182899.C.a.c	ENSGT00950000182930.B.c	ENSGT00940000155531.a.a.m.a	ENSGT00730000111202.e	ENSGT00950000183039.B.b.c.c	ENSGT00940000153421.a.a.b.c ##22	ENSGT01030000234598.a.b.f	ENSGT01030000234598.a.b.e.a	ENSGT00940000155789.gb.a	ENSGT00390000015332	ENSGT00940000156299.bb	ENSGT00940000159676.a.d	ENSGT00940000161734.o.b	ENSGT00550000074917.d	ENSGT00940000163250.C	ENSGT00390000018395.c.b.b	ENSGT00390000017913.`b.b.c.a	ENSGT00530000064359.c.b	ENSGT00940000158681.b.d	ENSGT00950000183104.B.a.b.a.b	ENSGT00940000165447.c
Huchen	MODERN SPECIES	4763												ENSHHUG00000003112	ENSHHUG00000003125	ENSHHUG00000003128	ENSHHUG00000003133	tbl1xr1a (ENSHHUG00000003142) ##22
Salmoninae_a	ANCESTRAL SPECIES	22	ENSGT00940000155776.a	ENSGT00940000177341	ENSGT01050000244939.a.a.b.a.b.g	ENSGT00390000003324.db.b	ENSGT00940000165893	ENSGT01100000263533.b.b.a.b.a.b.a.b.a.b	ENSGT00940000163206.b.a.a.f	ENSGT00390000017571.m	ENSGT00940000156162.C.d	ENSGT00940000156941.c	ENSGT00950000182899.C.a.c	ENSGT00950000182930.B.c	ENSGT00940000155531.a.a.m.a	ENSGT00730000111202.e	ENSGT00950000183039.B.b.c.c	ENSGT00940000153421.a.a.b.c ##22	ENSGT01030000234598.a.b.f	ENSGT01030000234598.a.b.e.a	ENSGT00940000155789.gb.a	ENSGT00390000015332	ENSGT00940000156299.bb	ENSGT00940000159676.a.d	ENSGT00940000161734.o.b	ENSGT00550000074917.d	ENSGT00940000163250.C.r	ENSGT00950000183104.B.a.b.a.b	ENSGT00940000165447.c	ENSGT00940000159560.c	ENSGT00500000044895.p	ENSGT00940000157458.k	ENSGT00940000157906.b
Salmo	ANCESTRAL SPECIES	14	ENSGT00940000177341	ENSGT01050000244939.a.a.b.a.b.g	ENSGT00390000003324.db.b	ENSGT00940000165893	ENSGT01100000263533.b.b.a.b.a.b.a.b.a.b	ENSGT01100000263533.b.b.a.b.a.b.a.b.a.a	ENSGT00940000163206.b.a.a.f	ENSGT00390000017571.m	ENSGT00940000156162.C.d	ENSGT00940000156941.c	ENSGT00950000182899.C.a.c	ENSGT00950000182930.B.c	ENSGT00940000155531.a.a.m.a	ENSGT00730000111202.e	ENSGT00950000183039.B.b.c.c	ENSGT00940000153421.a.a.b.c ##22	ENSGT01030000234598.a.b.e.a	ENSGT00940000155789.gb.a	ENSGT00390000015332	ENSGT00940000156299.bb	ENSGT00940000159676.a.d	ENSGT00940000161734.o.b	ENSGT00550000074917.d	ENSGT00940000163250.C.r	ENSGT00950000183104.B.a.b.a.b	ENSGT00940000165447.c	ENSGT00940000159560.c	ENSGT00500000044895.p	ENSGT00940000157458.k	ENSGT00940000157906.b	ENSGT00940000159504.r
Atlantic salmon	MODERN SPECIES	1	ENSSSAG00000042273	ENSSSAG00000042261	ENSSSAG00000041726	ENSSSAG00000041684	ENSSSAG00000097816	ENSSSAG00000108327	ENSSSAG00000121279	ENSSSAG00000103213	impact (ENSSSAG00000041439)	ENSSSAG00000094838	ENSSSAG00000038552	ENSSSAG00000071297	PIK3CA (ENSSSAG00000071257)	ZMAT3 (ENSSSAG00000071245)	ENSSSAG00000071241	tbl1xr1 (ENSSSAG00000071183) ##22	naaladl2 (ENSSSAG00000071148)	nlgn1 (ENSSSAG00000116812)	spata16 (ENSSSAG00000071025)	ect2 (ENSSSAG00000070771)	b3gnt5a (ENSSSAG00000070761)	ENSSSAG00000070452	ENSSSAG00000070659	ENSSSAG00000070655	ENSSSAG00000070601	k0841 (ENSSSAG00000070588)	ENSSSAG00000070482	xpr1a (ENSSSAG00000070234)	acbd6 (ENSSSAG00000070228)	lhx4 (ENSSSAG00000070226)	qsox1 (ENSSSAG00000118746)
River trout	MODERN SPECIES	14	ENSSTUG00000049407	ENSSTUG00000049402	ENSSTUG00000049399	TGM1 (ENSSTUG00000049328)	dad1 (ENSSTUG00000049311)	ENSSTUG00000049298	ENSSTUG00000049291	impact (ENSSTUG00000049285)	ATP11B (ENSSTUG00000049211)	mccc1 (ENSSTUG00000049028)	ENSSTUG00000049015	ENSSTUG00000049010	PIK3CA (ENSSTUG00000048994)	ZMAT3 (ENSSTUG00000048987)	ENSSTUG00000048984	tbl1xr1a (ENSSTUG00000048955) ##22	NAALADL2 (ENSSTUG00000048867)	nlgn1 (ENSSTUG00000048855)	SPATA16 (ENSSTUG00000048820)	ect2 (ENSSTUG00000048325)	ENSSTUG00000048135	rfc4 (ENSSTUG00000048085)	ENSSTUG00000048079	ENSSTUG00000048049	haus5 (ENSSTUG00000047993)	sin3b (ENSSTUG00000047836)	xpr1a (ENSSTUG00000047533)	acbd6 (ENSSTUG00000047508)	lhx4 (ENSSTUG00000047503)	qsox1 (ENSSTUG00000047496)	CEP350 (ENSSTUG00000047376)
Oncorhynchus	ANCESTRAL SPECIES	8	ENSGT00940000155776.a	ENSGT00940000177341	ENSGT01050000244939.a.a.b.a.b.g	ENSGT00390000003324.db.b	ENSGT00940000165893	ENSGT01100000263533.b.b.a.b.a.b.a.b.a.b	ENSGT00940000163206.b.a.a.f	ENSGT00390000017571.m	ENSGT00940000156162.C.d	ENSGT00940000156941.c	ENSGT00950000182899.C.a.c	ENSGT00950000182930.B.c	ENSGT00940000155531.a.a.m.a	ENSGT00730000111202.e	ENSGT00950000183039.B.b.c.c	ENSGT00940000153421.a.a.b.c ##22	ENSGT01030000234598.a.b.f	ENSGT00940000155789.gb.a	ENSGT00390000015332	ENSGT00940000156299.bb	ENSGT00940000159676.a.d	ENSGT00940000161734.o.b	ENSGT00550000074917.d	ENSGT00940000163250.C.r	ENSGT00950000183104.B.a.b.a.b	ENSGT00940000165447.c	ENSGT00940000159560.c	ENSGT00500000044895.p	ENSGT00940000157458.k	ENSGT00940000157906.b	ENSGT00940000159504.r
Oncorhynchus_a	ANCESTRAL SPECIES	14	ENSGT00940000155776.a	ENSGT00940000177341	ENSGT01050000244939.a.a.b.a.b.g	ENSGT00390000003324.db.b	ENSGT00940000165893	ENSGT01100000263533.b.b.a.b.a.b.a.b.a.b	ENSGT00940000163206.b.a.a.f	ENSGT00390000017571.m	ENSGT00940000156162.C.d	ENSGT00940000156941.c	ENSGT00950000182899.C.a.c	ENSGT00950000182930.B.c	ENSGT00940000155531.a.a.m.a	ENSGT00730000111202.e	ENSGT00950000183039.B.b.c.c	ENSGT00940000153421.a.a.b.c ##22	ENSGT01030000234598.a.b.f	ENSGT00940000155789.gb.a	ENSGT00390000015332	ENSGT00940000156299.bb	ENSGT00940000159676.a.d	ENSGT00940000161734.o.b	ENSGT00550000074917.d	ENSGT00940000163250.C.r	ENSGT00950000183104.B.a.b.a.b	ENSGT00940000165447.c	ENSGT00940000159560.c	ENSGT00500000044895.p	ENSGT00940000157458.k	ENSGT00940000157906.b	ENSGT00940000159504.r
Chinook salmon	MODERN SPECIES	29	ENSOTSG00005031478	ENSOTSG00005031477	TGM1 (ENSOTSG00005031337)	dad1 (ENSOTSG00005031335)	ENSOTSG00005031334	ENSOTSG00005031333	ENSOTSG00005031063	impact (ENSOTSG00005031054)	ATP11B (ENSOTSG00005030961)	mccc1 (ENSOTSG00005024548)	ENSOTSG00005024538	ENSOTSG00005024535	PIK3CA (ENSOTSG00005024533)	ZMAT3 (ENSOTSG00005024531)	ENSOTSG00005024530	tbl1xr1a (ENSOTSG00005024529) ##22	NAALADL2 (ENSOTSG00005024491)	nlgn1 (ENSOTSG00005024476)	SPATA16 (ENSOTSG00005024467)	ENSOTSG00005024464	ect2 (ENSOTSG00005024275)	b3gnt5a (ENSOTSG00005024264)	ENSOTSG00005024231	rfc4 (ENSOTSG00005024159)	ENSOTSG00005024155	ENSOTSG00005024080	haus5 (ENSOTSG00005024079)	sin3b (ENSOTSG00005023619)	xpr1a (ENSOTSG00005023517)	acbd6 (ENSOTSG00005023515)	lhx4 (ENSOTSG00005023514)
Coho salmon	MODERN SPECIES	4	ENSOKIG00005021833	ENSOKIG00005021879	TGM1 (ENSOKIG00005021912)	DAD1 (ENSOKIG00005021983)	ENSOKIG00005021993	ENSOKIG00005022026	ENSOKIG00005022056	impact (ENSOKIG00005022072)	ATP11B (ENSOKIG00005022159)	mccc1 (ENSOKIG00005022948)	ENSOKIG00005024080	ENSOKIG00005024104	PIK3CA (ENSOKIG00005024126)	ZMAT3 (ENSOKIG00005024220)	ENSOKIG00005024232	tbl1xr1a (ENSOKIG00005015320) ##22	NAALADL2 (ENSOKIG00005015359)	ENSOKIG00005015372	nlgn1 (ENSOKIG00005015390)	SPATA16 (ENSOKIG00005015434)	ect2 (ENSOKIG00005015498)	ENSOKIG00005016005	b3gnt5a (ENSOKIG00005018571)	RFC4 (ENSOKIG00005018589)	ENSOKIG00005018690	ENSOKIG00005018698	ENSOKIG00005018807	sin3b (ENSOKIG00005019005)	xpr1a (ENSOKIG00005020608)	ACBD6 (ENSOKIG00005020682)	qsox1 (ENSOKIG00005020707)
Rainbow trout	MODERN SPECIES	26	ENSOMYG00000030932	ENSOMYG00000030908	ENSOMYG00000075429	ENSOMYG00000030462	ENSOMYG00000030269	ENSOMYG00000030255	ENSOMYG00000030235	ENSOMYG00000030164	impact (ENSOMYG00000030139)	ENSOMYG00000030009	ENSOMYG00000025718	ENSOMYG00000024498	PIK3CA (ENSOMYG00000024649)	ZMAT3 (ENSOMYG00000024536)	ENSOMYG00000024518	tbl1xr1a (ENSOMYG00000024336) ##22	NAALADL2 (ENSOMYG00000024109)	ENSOMYG00000064559	ENSOMYG00000057319	nlgn1 (ENSOMYG00000024031)	ENSOMYG00000056083	SPATA16 (ENSOMYG00000023988)	ect2 (ENSOMYG00000023845)	b3gnt5a (ENSOMYG00000023705)	ENSOMYG00000023431	ENSOMYG00000023247	ENSOMYG00000023194	ENSOMYG00000023154	ENSOMYG00000023069	ENSOMYG00000021860	xpr1a (ENSOMYG00000021697)
Salmoninae	ANCESTRAL SPECIES	491	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00550000075121	ENSGT01050000244939.a.a.b.a.b.h	ENSGT00390000003324.db.a	ENSGT01100000263533.b.b.a.b.a.b.a.b.b	ENSGT00950000182977.B.b.a.c.a	ENSGT00940000163206.b.a.a.e	ENSGT00390000017571.n	ENSGT00940000156162.C.c	ENSGT00940000156941.d	ENSGT00950000182899.C.a.d	ENSGT00950000182930.B.d	ENSGT00940000155531.a.a.m.b	ENSGT00730000111202.f	ENSGT00950000183039.B.b.c.d	ENSGT00940000153421.a.a.b.d ##22	ENSGT01030000234598.a.b.e.b
Salmoninae_a	ANCESTRAL SPECIES	9	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00550000075121	ENSGT01050000244939.a.a.b.a.b.h	ENSGT00390000003324.db.a	ENSGT01100000263533.b.b.a.b.a.b.a.b.b	ENSGT00950000182977.B.b.a.c.a	ENSGT00940000163206.b.a.a.e	ENSGT00390000017571.n	ENSGT00940000156162.C.c	ENSGT00940000156941.d	ENSGT00950000182899.C.a.d	ENSGT00950000182930.B.d	ENSGT00940000155531.a.a.m.b	ENSGT00730000111202.f	ENSGT00950000183039.B.b.c.d	ENSGT00940000153421.a.a.b.d ##22	ENSGT01030000234598.a.b.e.b	ENSGT00940000155789.gb.b	ENSGT00940000156299.cb	ENSGT00940000159676.a.c	ENSGT00940000161734.o.a	ENSGT00550000074917.c	ENSGT00940000165447.d	ENSGT00940000159560.d	ENSGT00500000044895.q	ENSGT00940000157458.l	ENSGT00940000157906.a	ENSGT00940000159504.q	ENSGT00940000155130.d	ENSGT00940000155601.g.a	ENSGT00940000153838.b.f
Oncorhynchus	ANCESTRAL SPECIES		ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00550000075121	ENSGT01050000244939.a.a.b.a.b.h	ENSGT00390000003324.db.a	ENSGT01100000263533.b.b.a.b.a.b.a.b.b	ENSGT00950000182977.B.b.a.c.a	ENSGT00940000163206.b.a.a.e	ENSGT00390000017571.n	ENSGT00940000156162.C.c	ENSGT00940000156941.d	ENSGT00950000182899.C.a.d	ENSGT00950000182930.B.d	ENSGT00940000155531.a.a.m.b	ENSGT00730000111202.f	ENSGT00950000183039.B.b.c.d	ENSGT00940000153421.a.a.b.d ##22	ENSGT00940000155789.gb.b	ENSGT00940000156299.cb	ENSGT00940000159676.a.c	ENSGT00940000161734.o.a	ENSGT00550000074917.c	ENSGT00940000165447.d	ENSGT00940000159560.d	ENSGT00500000044895.q	ENSGT00940000157458.l	ENSGT00940000157906.a	ENSGT00940000159504.q	ENSGT00940000155130.d	ENSGT00940000155601.g.a	ENSGT00940000153838.b.f	ENSGT00940000154690.d.b
Oncorhynchus_a	ANCESTRAL SPECIES		ENSGT01020000230367.e.b.a.b.b.a.a.a.b.a.a.b.a	ENSGT01050000244939.a.a.b.a.b.h	ENSGT00390000003324.db.a	ENSGT01100000263533.b.b.a.b.a.b.a.b.b	ENSGT00950000182977.B.b.a.c.a	ENSGT00940000163206.b.a.a.e	ENSGT00390000017571.n	ENSGT00940000156162.C.c	ENSGT00940000156941.d	ENSGT00950000182899.C.a.d	ENSGT00950000182930.B.d	ENSGT00940000155531.a.a.m.b	ENSGT00730000111202.f	ENSGT00950000183039.B.b.c.d	ENSGT00390000018199.b.k	ENSGT00940000153421.a.a.b.d ##22	ENSGT00940000155789.gb.b	ENSGT00940000156299.cb	ENSGT00940000159676.a.c	ENSGT00940000161734.o.a	ENSGT00550000074917.c	ENSGT00940000165447.d	ENSGT00940000159560.d	ENSGT00500000044895.q	ENSGT00940000157458.l	ENSGT00940000157906.a	ENSGT00940000159504.q	ENSGT00940000155130.d	ENSGT00940000155601.g.a	ENSGT00940000153838.b.f	ENSGT00940000154690.d.b
Coho salmon	MODERN SPECIES	1	TGM1 (ENSOKIG00005014486)	dad1 (ENSOKIG00005014471)	ENSOKIG00005014467	si:ch211-264f5.2 (ENSOKIG00005014455)	ENSOKIG00005014450	ENSOKIG00005014415	ATP11B (ENSOKIG00005014020)	MCCC1 (ENSOKIG00005013471)	ENSOKIG00005013409	ENSOKIG00005013401	ZMAT3 (ENSOKIG00005013396)	ENSOKIG00005013386	ENSOKIG00005013380	ENSOKIG00005013373	ENSOKIG00005013368	tbl1xr1a (ENSOKIG00005013264) ##22	ENSOKIG00005013213	ENSOKIG00005013210	nlgn1 (ENSOKIG00005013165)	ENSOKIG00005013154	ect2 (ENSOKIG00005012999)	b3gnt5a (ENSOKIG00005012972)	ENSOKIG00005012873	rfc4 (ENSOKIG00005012779)	haus5 (ENSOKIG00005012220)	SIN3B (ENSOKIG00005012191)	xpr1a (ENSOKIG00005012172)	acbd6 (ENSOKIG00005012156)	lhx4 (ENSOKIG00005012141)	qsox1 (ENSOKIG00005012135)	CEP350 (ENSOKIG00005012112)
Chinook salmon	MODERN SPECIES		TGM1 (ENSOTSG00005026475)	dad1 (ENSOTSG00005026473)	ENSOTSG00005026472	si:ch211-264f5.2 (ENSOTSG00005026471)	ENSOTSG00005026470	ENSOTSG00005026469	ENSOTSG00005026468	ATP11B (ENSOTSG00005026101)	mccc1 (ENSOTSG00005022515)	ENSOTSG00005022503	ENSOTSG00005022502	PIK3CA (ENSOTSG00005022499)	ZMAT3 (ENSOTSG00005022498)	ENSOTSG00005022497	ENSOTSG00005022496	tbl1xr1a (ENSOTSG00005022436) ##22	nlgn1 (ENSOTSG00005022421)	ect2 (ENSOTSG00005021573)	b3gnt5a (ENSOTSG00005021538)	ENSOTSG00005021435	rfc4 (ENSOTSG00005021365)	FZR1 (ENSOTSG00005021364)	haus5 (ENSOTSG00005021350)	sin3b (ENSOTSG00005021343)	xpr1a (ENSOTSG00005021312)	acbd6 (ENSOTSG00005021310)	lhx4 (ENSOTSG00005021309)	qsox1 (ENSOTSG00005021308)	CACNA1E (ENSOTSG00005002255)	abl2 (ENSOTSG00005027012)	osbpl9 (ENSOTSG00005026982)
Rainbow trout	MODERN SPECIES	22	dad1 (ENSOMYG00000034133)	ENSOMYG00000034124	ENSOMYG00000034109	ENSOMYG00000034101	ENSOMYG00000034097	ENSOMYG00000034087	ENSOMYG00000033839	ENSOMYG00000053219	ENSOMYG00000033398	ENSOMYG00000033213	ENSOMYG00000058600	ENSOMYG00000061418	ENSOMYG00000032941	ENSOMYG00000032925	ENSOMYG00000067416	tbl1xr1a (ENSOMYG00000032826) ##22	ENSOMYG00000075803	nlgn1 (ENSOMYG00000032731)	ect2 (ENSOMYG00000032542)	b3gnt5a (ENSOMYG00000032429)	ENSOMYG00000032271	ENSOMYG00000032148	ENSOMYG00000032108	ENSOMYG00000031988	xpr1a (ENSOMYG00000031834)	acbd6 (ENSOMYG00000050226)	lhx4 (ENSOMYG00000031792)	qsox1 (ENSOMYG00000031780)	CEP350 (ENSOMYG00000031754)	ENSOMYG00000047973	ENSOMYG00000011294
Salmo	ANCESTRAL SPECIES	20	ENSGT00940000159251.g	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00550000075121	ENSGT01050000244939.a.a.b.a.b.h	ENSGT00390000003324.db.a	ENSGT01100000263533.b.b.a.b.a.b.a.b.b	ENSGT00950000182977.B.b.a.c.a	ENSGT00940000163206.b.a.a.e	ENSGT00390000017571.n	ENSGT00940000156162.C.c	ENSGT00940000156941.d	ENSGT00950000182899.C.a.d	ENSGT00950000182930.B.d	ENSGT00730000111202.f	ENSGT00950000183039.B.b.c.d	ENSGT00940000153421.a.a.b.d ##22	ENSGT01030000234598.a.b.e.b	ENSGT00940000155789.gb.b	ENSGT00940000156299.cb	ENSGT00940000161734.o.a	ENSGT00940000159676.a.c	ENSGT00550000074917.c	ENSGT00940000165447.d	ENSGT00940000159560.d	ENSGT00500000044895.q	ENSGT00940000157458.l	ENSGT00940000157906.a	ENSGT00940000159504.q	ENSGT00940000155130.d	ENSGT00940000155601.g.a	ENSGT00940000153838.b.f
Atlantic salmon	MODERN SPECIES	15	ENSSSAG00000063536	ENSSSAG00000084133	cyp2ad2 (ENSSSAG00000067784)	rabggta (ENSSSAG00000067852)	ENSSSAG00000067898	dad1 (ENSSSAG00000068386)	ENSSSAG00000107583	ENSSSAG00000068393	ENSSSAG00000089031	ENSSSAG00000068412	ENSSSAG00000068425	MCCA (ENSSSAG00000068531)	ENSSSAG00000068757	ENSSSAG00000082331	ZMAT3 (ENSSSAG00000105821)	tbl1xr1a (ENSSSAG00000068792) ##22	NAALADL2 (ENSSSAG00000068817)	ENSSSAG00000101389	nlgn1 (ENSSSAG00000071052)	ENSSSAG00000105961	ENSSSAG00000068835	ect2 (ENSSSAG00000068867)	ENSSSAG00000070692	b3gnt5a (ENSSSAG00000071105)	ENSSSAG00000083355	ENSSSAG00000087703	ENSSSAG00000092327	ENSSSAG00000071132	xpr1a (ENSSSAG00000119365)	acbd6 (ENSSSAG00000071407)	lhx4 (ENSSSAG00000087689)
River trout	MODERN SPECIES	33	rabggta (ENSSTUG00000018836)	ENSSTUG00000018886	ENSSTUG00000018897	dad1 (ENSSTUG00000019015)	ENSSTUG00000019025	si:ch211-264f5.2 (ENSSTUG00000019039)	ENSSTUG00000003931	ENSSTUG00000003939	ENSSTUG00000003945	ATP11B (ENSSTUG00000004006)	mccc1 (ENSSTUG00000004870)	ENSSTUG00000006058	ENSSTUG00000006080	ZMAT3 (ENSSTUG00000006140)	ENSSTUG00000006150	tbl1xr1a (ENSSTUG00000006160) ##22	ENSSTUG00000006234	nlgn1 (ENSSTUG00000006246)	ENSSTUG00000006294	ect2 (ENSSTUG00000006315)	ENSSTUG00000006677	b3gnt5a (ENSSTUG00000006990)	rfc4 (ENSSTUG00000006994)	FZR1 (ENSSTUG00000007013)	haus5 (ENSSTUG00000007035)	sin3b (ENSSTUG00000007091)	xpr1a (ENSSTUG00000007205)	acbd6 (ENSSTUG00000007248)	lhx4 (ENSSTUG00000007258)	qsox1 (ENSSTUG00000007285)	CEP350 (ENSSTUG00000007305)
Huchen	MODERN SPECIES	200	rabggta (ENSHHUG00000030708)	TGM1 (ENSHHUG00000030743)	dad1 (ENSHHUG00000030863)	ENSHHUG00000030876	ENSHHUG00000030878	ENSHHUG00000030886	ENSHHUG00000030889	impact (ENSHHUG00000030896)	ATP11B (ENSHHUG00000030910)	mccc1 (ENSHHUG00000031545)	ENSHHUG00000031980	ENSHHUG00000031990	ENSHHUG00000032000	ZMAT3 (ENSHHUG00000032006)	ENSHHUG00000032010	tbl1xr1a (ENSHHUG00000032017) ##22	ENSHHUG00000032105
Northern pike	MODERN SPECIES	7	ENSELUG00000029065	ENSELUG00000034277	ENSELUG00000010986	ENSELUG00000010973	ENSELUG00000025953	ENSELUG00000010941	ENSELUG00000010930	impact (ENSELUG00000010893)	ATP11B (ENSELUG00000010730)	mccc1 (ENSELUG00000010299)	ENSELUG00000010234	kng1 (ENSELUG00000010213)	PIK3CA (ENSELUG00000010177)	ZMAT3 (ENSELUG00000010132)	ENSELUG00000010113	tbl1xr1a (ENSELUG00000010098) ##22	NAALADL2 (ENSELUG00000010049)	nlgn1 (ENSELUG00000009996)	SPATA16 (ENSELUG00000009906)	ect2 (ENSELUG00000009790)	ENSELUG00000009544	b3gnt5a (ENSELUG00000009219)	rfc4 (ENSELUG00000009193)	ENSELUG00000009146	ENSELUG00000009129	haus5 (ENSELUG00000009076)	sin3b (ENSELUG00000009027)	xpr1a (ENSELUG00000000341)	acbd6 (ENSELUG00000008918)	lhx4 (ENSELUG00000008898)	qsox1 (ENSELUG00000008878)
Osteoglossiformes	ANCESTRAL SPECIES	170											ENSGT00940000158024.B.f	ENSGT00940000165367.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00940000156299.gb	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00550000074917	ENSGT00940000153783.b.b.d.g	ENSGT00950000182930.B	ENSGT00950000182899.C.a	ENSGT00940000156941	ENSGT00940000154552.j	ENSGT00950000183189.a.b.a.n	ENSGT00390000013701	ENSGT00940000174617	ENSGT00940000153386.A
Asian bonytongue	MODERN SPECIES	17	ENSSFOG00015014662	ENSSFOG00015014570	cpdp (ENSSFOG00015014514)	ENSSFOG00015031334	ENSSFOG00015014428	dynlt2b (ENSSFOG00015014415)	dynlt2b (ENSSFOG00015014400)	NMUR1 (ENSSFOG00015014351)	ephb3a (ENSSFOG00015014281)	ENSSFOG00015014265	ENSSFOG00015014240	polr2h (ENSSFOG00015014221)	KCNMB3 (ENSSFOG00015014201)	PIK3CA (ENSSFOG00015014161)	kcnmb2 (ENSSFOG00015028985)	ENSSFOG00015014101 ##22	nlgn1 (ENSSFOG00015014077)	ect2 (ENSSFOG00015014038)	ENSSFOG00015013908	b3gnt5b (ENSSFOG00015014030)	EIF4A2 (ENSSFOG00015013858)	dcun1d1 (ENSSFOG00015013831)	ENSSFOG00015013618	sox2 (ENSSFOG00015033213)	dnajc19 (ENSSFOG00015013549)	fxr1 (ENSSFOG00015013518)	CCDC39 (ENSSFOG00015013492)	ENSSFOG00015029763	ENSSFOG00015026000	eif2b5 (ENSSFOG00015013408)	ENSSFOG00015013467
P. kingsleyae	DUPLICATION
P. kingsleyae	MODERN SPECIES	258	TSC22D2 (ENSPKIG00000022443)	ENSPKIG00000022465	ENSPKIG00000022521	ENSPKIG00000022615	cpdp (ENSPKIG00000022666)	ENSPKIG00000022712	dynlt2b (ENSPKIG00000022729)	NMUR1 (ENSPKIG00000022754)	ENSPKIG00000022768	ephb3a (ENSPKIG00000022786)	ENSPKIG00000022812	polr2h (ENSPKIG00000022836)	ENSPKIG00000022856	PIK3CA (ENSPKIG00000022882)	kcnmb2 (ENSPKIG00000022923)	ENSPKIG00000022996 ##22
P. kingsleyae	MODERN SPECIES	40	ANKUB1 (ENSPKIG00000024057)	rnf13 (ENSPKIG00000024044)	pfn2a (ENSPKIG00000024034)	TSC22D2 (ENSPKIG00000024026)	ENSPKIG00000023990	ENSPKIG00000023969	ENSPKIG00000023958	NMUR1 (ENSPKIG00000023945)	ENSPKIG00000023923	hykk.2 (ENSPKIG00000023907)	EPHB3 (ENSPKIG00000023681)	ENSPKIG00000023471	PIK3CA (ENSPKIG00000023411)	ZMAT3 (ENSPKIG00000023370)	ENSPKIG00000023347	ENSPKIG00000023255 ##22	NAALADL2 (ENSPKIG00000023179)	NLGN1 (ENSPKIG00000023138)	ECT2 (ENSPKIG00000023048)	b3gnt5a (ENSPKIG00000023024)	ENSPKIG00000022874	rfc4 (ENSPKIG00000022814)	eif4a2 (ENSPKIG00000022776)	ENSPKIG00000022749	ENSPKIG00000022732	mccc1 (ENSPKIG00000022682)	DCUN1D1 (ENSPKIG00000022649)	DNASE2B (ENSPKIG00000022628)	uox (ENSPKIG00000022605)	samd13 (ENSPKIG00000022571)	prkacbb (ENSPKIG00000022518)
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000153421.a.b ##22
Gnathostomata	ANCESTRAL SPECIES	133				ENSGT00950000183070.a.a	ENSGT00390000000263	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699
Euteleostomi	ANCESTRAL SPECIES	66			ENSGT00950000183070.a.a	ENSGT00390000000263	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT01010000223088	ENSGT01080000257342.H	ENSGT00950000183196.B	ENSGT00940000163015	ENSGT00940000155708
Sarcopterygii	ANCESTRAL SPECIES	26	ENSGT00940000154384	ENSGT00950000183189.a.b.a	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT01010000223088	ENSGT00950000183196.B	ENSGT00940000163015	ENSGT00940000155708	ENSGT00390000003738.a.b
Tetrapoda	ANCESTRAL SPECIES	12	ENSGT00950000183189.a.b.a	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT01010000223088	ENSGT00950000183196.B	ENSGT00940000163015	ENSGT00940000155708	ENSGT00390000003738.a.b
Amniota	ANCESTRAL SPECIES	13	ENSGT00950000183189.a.b.a	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT01010000223088	ENSGT00950000183196.B	ENSGT00940000163015	ENSGT00940000155708	ENSGT00390000003738.a.b
Mammalia	ANCESTRAL SPECIES	7	ENSGT00950000183189.a.b.a	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT01010000223088	ENSGT00950000183196.B	ENSGT00940000163015	ENSGT00940000155708	ENSGT00390000003738.a.b
Theria	ANCESTRAL SPECIES	5	ENSGT00950000183189.a.b.a	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT01010000223088	ENSGT00950000183196.B	ENSGT00940000163015	ENSGT00940000155708	ENSGT00390000003738.a.b
Eutheria	ANCESTRAL SPECIES	5	ENSGT00950000183189.a.b.a	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT01010000223088	ENSGT00950000183196.B	ENSGT00940000163015	ENSGT00940000155708	ENSGT00390000003738.a.b
Atlantogenata	ANCESTRAL SPECIES	19	ENSGT00950000183189.a.b.a	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509	ENSGT00940000155893.b
Xenarthra	ANCESTRAL SPECIES																	ENSGT00940000153421.a.b ##22
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	850																ENSDNOG00000002317 ##22	NUF2 (ENSDNOG00000000432)
Armadillo	MODERN SPECIES	1992										ENSDNOG00000041562	ENSDNOG00000033050	ENSDNOG00000047037	ENSDNOG00000035280	ENSDNOG00000010006	ENSDNOG00000043357	ENSDNOG00000037623 ##22
Sloth	MODERN SPECIES	6355																TBL1XR1 (ENSCHOG00000011686) ##22
Afrotheria	ANCESTRAL SPECIES	118											ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509	ENSGT00940000155893.b	ENSGT00890000139496	ENSGT00940000158435
Tenrec	MODERN SPECIES	6986																ENSETEG00000016906 ##22
Afrotheria_a	ANCESTRAL SPECIES	119											ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509	ENSGT00940000155893.b	ENSGT00890000139496	ENSGT00940000158435
Elephant	MODERN SPECIES	388											ZNF639 (ENSLAFG00000001733)	KCNMB3 (ENSLAFG00000003072)	PIK3CA (ENSLAFG00000003071)	ZMAT3 (ENSLAFG00000000897)	KCNMB2 (ENSLAFG00000004923)	TBL1XR1 (ENSLAFG00000021750) ##22	NLGN1 (ENSLAFG00000010162)	ENSLAFG00000025798	SPATA16 (ENSLAFG00000009211)	ECT2 (ENSLAFG00000007798)	NCEH1 (ENSLAFG00000010083)	ENSLAFG00000026187	TNFSF10 (ENSLAFG00000014313)	GHSR (ENSLAFG00000017284)	FNDC3B (ENSLAFG00000017259)	PLD1 (ENSLAFG00000000014)	TNIK (ENSLAFG00000017445)	SLC2A2 (ENSLAFG00000012114)	EIF5A2 (ENSLAFG00000013225)	RPL22L1 (ENSLAFG00000013220)	SLC7A14 (ENSLAFG00000006924)
Hyrax	MODERN SPECIES	11104																TBL1XR1 (ENSPCAG00000011163) ##22
Boreoeutheria	ANCESTRAL SPECIES	2	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00910000147128	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00860000135711	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT01010000223088	ENSGT00950000183196.B	ENSGT00940000163015	ENSGT00940000155708
Euarchontoglires	ANCESTRAL SPECIES	2	ENSGT00940000155931	ENSGT00910000147128	ENSGT00940000157401	ENSGT00390000009980	ENSGT00960000190585	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00910000147422	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00860000135711	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT01010000223088	ENSGT00950000183196.B	ENSGT00940000182224	ENSGT00940000163015
Primates	ANCESTRAL SPECIES	1	ENSGT00940000155931	ENSGT00910000147128	ENSGT00940000157401	ENSGT00390000009980	ENSGT00960000190585	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00910000147422	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00860000135711	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT01010000223088	ENSGT00950000183196.B	ENSGT00940000182224	ENSGT00940000155708
Haplorrhini	ANCESTRAL SPECIES	5	ENSGT00390000013701	ENSGT00940000155931	ENSGT00910000147128	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00910000147422	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00860000135711	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509
Simiiformes	ANCESTRAL SPECIES	1	ENSGT00390000013701	ENSGT00940000155931	ENSGT00910000147128	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00910000147422	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00860000135711	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00390000001813	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b
Catarrhini	ANCESTRAL SPECIES	2	ENSGT00910000147128	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT00940000154863.db.d	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00530000063564.b.e.b	ENSGT00950000183039.B.a	ENSGT00910000147422	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00860000135711	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000159720.x	ENSGT00940000156299	ENSGT00940000156699	ENSGT00940000155147.n	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00390000001813	ENSGT00940000155015	ENSGT00950000183196.B
Hominoidea	ANCESTRAL SPECIES	2	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT00940000154863.db.d	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00530000063564.b.e.b	ENSGT00950000183039.B.a	ENSGT00910000147422	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00860000135711	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000159720.x	ENSGT00940000156299	ENSGT00940000156699	ENSGT00940000155147.n	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00390000001813	ENSGT00940000155015	ENSGT00950000183196.B
Hominidae	ANCESTRAL SPECIES	2	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT00940000154863.db.d	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00530000063564.b.e.b	ENSGT00950000183039.B.a	ENSGT00910000147422	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00860000135711	ENSGT01030000234598.a.b	ENSGT00940000153244.B.ec.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000159720.x	ENSGT00940000156299	ENSGT00550000076377	ENSGT00940000156699	ENSGT00940000155147.n	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00390000001813
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	2	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT00940000154863.db.d	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00530000063564.b.e.b	ENSGT00950000183039.B.a	ENSGT00910000147422	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00860000135711	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000153244.B.ec.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00550000076377	ENSGT00940000156699.d	ENSGT00940000155147.n	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00390000001813	ENSGT00940000155015	ENSGT00950000183196.B
Gorilla	MODERN SPECIES	16	PEX5L (ENSGGOG00000003000)	USP13 (ENSGGOG00000034809)	NDUFB5 (ENSGGOG00000005222)	MRPL47 (ENSGGOG00000027171)	ACTL6A (ENSGGOG00000015710)	ENSGGOG00000002247	GNB4 (ENSGGOG00000026248)	MFN1 (ENSGGOG00000009357)	ZNF639 (ENSGGOG00000025664)	ENSGGOG00000041059	KCNMB3 (ENSGGOG00000003933)	PIK3CA (ENSGGOG00000009365)	ZMAT3 (ENSGGOG00000009975)	KCNMB2 (ENSGGOG00000015779)	ENSGGOG00000041945	TBL1XR1 (ENSGGOG00000009532) ##22	NAALADL2 (ENSGGOG00000043435)	NLGN1 (ENSGGOG00000004187)	SPATA16 (ENSGGOG00000002411)	ECT2 (ENSGGOG00000008685)	ENSGGOG00000043359	NCEH1 (ENSGGOG00000012274)	ENSGGOG00000037797	TNFSF10 (ENSGGOG00000014549)	GHSR (ENSGGOG00000024411)	FNDC3B (ENSGGOG00000002990)	TMEM212 (ENSGGOG00000014040)	PLD1 (ENSGGOG00000007868)	TNIK (ENSGGOG00000007526)	SLC2A2 (ENSGGOG00000010660)	ENSGGOG00000038385
Homo/Pan group	ANCESTRAL SPECIES	3	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT00940000154863.db.d	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00530000063564.b.e.b	ENSGT00950000183039.B.a	ENSGT00910000147422	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000153244.B.ec.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00550000076377	ENSGT00940000156699.d	ENSGT00940000155147.n	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00390000001813	ENSGT00940000155015	ENSGT00950000183196.B
Human	MODERN SPECIES	15	CCDC39 (ENSG00000284862)	TTC14 (ENSG00000163728)	PEX5L (ENSG00000114757)	USP13 (ENSG00000058056)	NDUFB5 (ENSG00000136521)	MRPL47 (ENSG00000136522)	ACTL6A (ENSG00000136518)	GNB4 (ENSG00000114450)	MFN1 (ENSG00000171109)	ZNF639 (ENSG00000121864)	KCNMB3 (ENSG00000171121)	PIK3CA (ENSG00000121879)	ZMAT3 (ENSG00000172667)	ENSG00000275163	KCNMB2 (ENSG00000197584)	TBL1XR1 (ENSG00000177565) ##22	NAALADL2 (ENSG00000177694)	NLGN1 (ENSG00000169760)	SPATA16 (ENSG00000144962)	ECT2 (ENSG00000114346)	NCEH1 (ENSG00000144959)	TNFSF10 (ENSG00000121858)	GHSR (ENSG00000121853)	FNDC3B (ENSG00000075420)	TMEM212 (ENSG00000186329)	PLD1 (ENSG00000075651)	TNIK (ENSG00000154310)	SLC2A2 (ENSG00000163581)	EIF5A2 (ENSG00000163577)	RPL22L1 (ENSG00000163584)	SLC7A14 (ENSG00000013293)
Pan	ANCESTRAL SPECIES	2	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT00940000154863.db.d	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00530000063564.b.e.b	ENSGT00950000183039.B.a	ENSGT00910000147422	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00940000158854	ENSGT01030000234598.a.b	ENSGT00940000153244.B.ec.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00550000076377	ENSGT00940000156699.d	ENSGT00940000155147.n	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00390000001813	ENSGT00940000155015
Bonobo	MODERN SPECIES	16	PEX5L (ENSPPAG00000036179)	USP13 (ENSPPAG00000001256)	NDUFB5 (ENSPPAG00000032519)	MRPL47 (ENSPPAG00000028033)	ACTL6A (ENSPPAG00000031814)	ENSPPAG00000031844	GNB4 (ENSPPAG00000043825)	MFN1 (ENSPPAG00000043805)	ZNF639 (ENSPPAG00000031214)	ENSPPAG00000040290	KCNMB3 (ENSPPAG00000012788)	PIK3CA (ENSPPAG00000028292)	ZMAT3 (ENSPPAG00000035483)	KCNMB2 (ENSPPAG00000035742)	ENSPPAG00000028436	TBL1XR1 (ENSPPAG00000042757) ##22	ENSPPAG00000024602	NAALADL2 (ENSPPAG00000032916)	ENSPPAG00000042448	NLGN1 (ENSPPAG00000030168)	SPATA16 (ENSPPAG00000026984)	ECT2 (ENSPPAG00000040084)	ENSPPAG00000000636	NCEH1 (ENSPPAG00000015341)	ENSPPAG00000036883	TNFSF10 (ENSPPAG00000040821)	GHSR (ENSPPAG00000029765)	FNDC3B (ENSPPAG00000016544)	TMEM212 (ENSPPAG00000027890)	ENSPPAG00000042519	PLD1 (ENSPPAG00000031781)
Chimpanzee	MODERN SPECIES	16	PEX5L (ENSPTRG00000015651)	USP13 (ENSPTRG00000015650)	NDUFB5 (ENSPTRG00000015649)	MRPL47 (ENSPTRG00000015648)	ACTL6A (ENSPTRG00000023973)	ENSPTRG00000050962	GNB4 (ENSPTRG00000015646)	MFN1 (ENSPTRG00000015645)	ZNF639 (ENSPTRG00000015644)	ENSPTRG00000051036	KCNMB3 (ENSPTRG00000015643)	ENSPTRG00000047696	PIK3CA (ENSPTRG00000015642)	ZMAT3 (ENSPTRG00000015641)	KCNMB2 (ENSPTRG00000041297)	TBL1XR1 (ENSPTRG00000015639) ##22	ENSPTRG00000034248	NAALADL2 (ENSPTRG00000015638)	ENSPTRG00000045205	NLGN1 (ENSPTRG00000024345)	SPATA16 (ENSPTRG00000015635)	ECT2 (ENSPTRG00000015634)	ENSPTRG00000050434	NCEH1 (ENSPTRG00000015632)	ENSPTRG00000048665	TNFSF10 (ENSPTRG00000015631)	GHSR (ENSPTRG00000015630)	FNDC3B (ENSPTRG00000015629)	TMEM212 (ENSPTRG00000015628)	ENSPTRG00000043296	PLD1 (ENSPTRG00000015626)
Orangutan	MODERN SPECIES	16	ENSPPYG00000014324	PEX5L (ENSPPYG00000014323)	USP13 (ENSPPYG00000014322)	NDUFB5 (ENSPPYG00000037815)	MRPL47 (ENSPPYG00000014321)	ACTL6A (ENSPPYG00000014320)	ENSPPYG00000040586	GNB4 (ENSPPYG00000040073)	MFN1 (ENSPPYG00000014318)	ZNF639 (ENSPPYG00000031916)	KCNMB3 (ENSPPYG00000014316)	ENSPPYG00000034294	PIK3CA (ENSPPYG00000025901)	ENSPPYG00000014315	KCNMB2 (ENSPPYG00000014313)	TBL1XR1 (ENSPPYG00000033167) ##22	ENSPPYG00000014312	NAALADL2 (ENSPPYG00000014311)	ENSPPYG00000030345	NLGN1 (ENSPPYG00000014309)	SPATA16 (ENSPPYG00000014306)	ENSPPYG00000040416	ECT2 (ENSPPYG00000014305)	ENSPPYG00000014468	NCEH1 (ENSPPYG00000014304)	TNFSF10 (ENSPPYG00000014303)	GHSR (ENSPPYG00000014302)	FNDC3B (ENSPPYG00000014301)	TMEM212 (ENSPPYG00000014300)	ENSPPYG00000014299	PLD1 (ENSPPYG00000014298)
Gibbon	MODERN SPECIES	1	PEX5L (ENSNLEG00000005874)	USP13 (ENSNLEG00000005851)	NDUFB5 (ENSNLEG00000034646)	MRPL47 (ENSNLEG00000005831)	ACTL6A (ENSNLEG00000035913)	ENSNLEG00000035220	GNB4 (ENSNLEG00000005751)	MFN1 (ENSNLEG00000005745)	ZNF639 (ENSNLEG00000005744)	ENSNLEG00000031548	ENSNLEG00000005735	PIK3CA (ENSNLEG00000005661)	ZMAT3 (ENSNLEG00000005658)	KCNMB2 (ENSNLEG00000005652)	ENSNLEG00000029452	TBL1XR1 (ENSNLEG00000005631) ##22	NAALADL2 (ENSNLEG00000005623)	NLGN1 (ENSNLEG00000005618)	SPATA16 (ENSNLEG00000005617)	ECT2 (ENSNLEG00000005565)	NCEH1 (ENSNLEG00000005559)	ENSNLEG00000035870	TNFSF10 (ENSNLEG00000005545)	GHSR (ENSNLEG00000005544)	FNDC3B (ENSNLEG00000005477)	TMEM212 (ENSNLEG00000005473)	ENSNLEG00000031506	PLD1 (ENSNLEG00000005457)	TNIK (ENSNLEG00000005318)	SLC2A2 (ENSNLEG00000005297)	ENSNLEG00000027572
Cercopithecidae	ANCESTRAL SPECIES	1	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT00940000154863.db.d	ENSGT01000000214413.b.a.a	ENSGT00910000147799	ENSGT00390000013727.d	ENSGT00940000156335.o	ENSGT00530000063564.b.e.b	ENSGT00950000183039.B.a	ENSGT00910000147422	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00860000135711	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000159720.x	ENSGT00940000156299	ENSGT00940000156699	ENSGT00550000076377	ENSGT00940000155147.n	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00390000001813	ENSGT00940000155015
Rhinopithecus	ANCESTRAL SPECIES	1011																ENSGT00940000153421.a.b ##22	ENSGT00860000135711
Golden snub-nosed monkey	MODERN SPECIES	2191														ENSRROG00000036781	ENSRROG00000027925	TBL1XR1 (ENSRROG00000043243) ##22
Black snub-nosed monkey	MODERN SPECIES	1302																TBL1XR1 (ENSRBIG00000025391) ##22	ENSRBIG00000035853	ENSRBIG00000025306
Cercopithecinae	ANCESTRAL SPECIES	5	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT00940000154863.db.d	ENSGT01000000214413.b.a.a	ENSGT00910000147799	ENSGT00390000013727.d	ENSGT00940000156335.o	ENSGT00530000063564.b.e.b	ENSGT00950000183039.B.a	ENSGT00910000147422	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00860000135711	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000159720.x	ENSGT00940000156299	ENSGT00940000156699	ENSGT00550000076377	ENSGT00940000155147.n	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00390000001813	ENSGT00940000155015
Vervet Monkey	MODERN SPECIES	6	CCDC39 (ENSCSAG00000013137)	TTC14 (ENSCSAG00000013105)	PEX5L (ENSCSAG00000013101)	USP13 (ENSCSAG00000013094)	NDUFB5 (ENSCSAG00000013080)	ENSCSAG00000013046	ACTL6A (ENSCSAG00000013017)	GNB4 (ENSCSAG00000012993)	MFN1 (ENSCSAG00000012988)	ZNF639 (ENSCSAG00000012977)	KCNMB3 (ENSCSAG00000012962)	PIK3CA (ENSCSAG00000012948)	ZMAT3 (ENSCSAG00000012935)	KCNMB2 (ENSCSAG00000012931)	ENSCSAG00000018884	TBL1XR1 (ENSCSAG00000012927) ##22	NAALADL2 (ENSCSAG00000012912)	ENSCSAG00000018885	NLGN1 (ENSCSAG00000012894)	SPATA16 (ENSCSAG00000012878)	ECT2 (ENSCSAG00000012841)	ENSCSAG00000018886	NCEH1 (ENSCSAG00000012823)	TNFSF10 (ENSCSAG00000012815)	GHSR (ENSCSAG00000012810)	FNDC3B (ENSCSAG00000012797)	TMEM212 (ENSCSAG00000012780)	PLD1 (ENSCSAG00000012767)	TNIK (ENSCSAG00000012748)	SLC2A2 (ENSCSAG00000012727)	EIF5A2 (ENSCSAG00000012722)
Cercopithecinae_a	ANCESTRAL SPECIES	5	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837.m	ENSGT00940000156305	ENSGT00940000154863.db.d	ENSGT01000000214413.b.a.a	ENSGT00910000147799	ENSGT00390000013727.d	ENSGT00940000156335.o	ENSGT00530000063564.b.e.b	ENSGT00950000183039.B.a	ENSGT00910000147422	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00860000135711.a	ENSGT01030000234598.a.b	ENSGT00940000154259.l.c.a.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000159720.x	ENSGT00940000156299	ENSGT00940000156699	ENSGT00550000076377	ENSGT00940000155147.n	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00390000001813
Cercopithecinae_b	DUPLICATION
Cercopithecinae_b	ANCESTRAL SPECIES																	ENSGT00940000153421.a.b.c ##22
Cercopithecinae_d	ANCESTRAL SPECIES																	ENSGT00940000153421.a.b.c ##22
Drill	MODERN SPECIES	1412													ENSMLEG00000039787	PTPRK (ENSMLEG00000037384)	THEMIS (ENSMLEG00000027804)	ENSMLEG00000032738 ##22	C6orf58 (ENSMLEG00000031416)	SOGA3 (ENSMLEG00000038336)	KIAA0408 (ENSMLEG00000041594)
Cercopithecinae_b	ANCESTRAL SPECIES		ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837.m	ENSGT00940000156305	ENSGT00940000154863.db.d	ENSGT01000000214413.b.a.a	ENSGT00910000147799	ENSGT00390000013727.d	ENSGT00940000156335.o	ENSGT00530000063564.b.e.b	ENSGT00950000183039.B.a	ENSGT00910000147422	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b.d ##22	ENSGT01030000234598.a.b	ENSGT00940000154259.l.c.a.a.b	ENSGT00940000155789	ENSGT00910000147646	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT00940000155147.n	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00390000001813	ENSGT00940000155015	ENSGT00390000009310.j.a.b
Olive baboon	MODERN SPECIES	11	ENSPANG00000010712	GNB4 (ENSPANG00000018882)	MFN1 (ENSPANG00000018156)	ZNF639 (ENSPANG00000024157)	KCNMB3 (ENSPANG00000023165)	PIK3CA (ENSPANG00000023166)	ZMAT3 (ENSPANG00000023167)	KCNMB2 (ENSPANG00000019971)	ENSPANG00000036994	ENSPANG00000051236	ENSPANG00000036979	ENSPANG00000046346	ENSPANG00000037722	ENSPANG00000039756	ENSPANG00000046461	TBL1XR1 (ENSPANG00000011144) ##22	ENSPANG00000050904	NAALADL2 (ENSPANG00000024430)	ENSPANG00000048384	ENSPANG00000042822	ENSPANG00000048566	ENSPANG00000050272	NLGN1 (ENSPANG00000004617)	ENSPANG00000048027	ENSPANG00000040437	SPATA16 (ENSPANG00000009809)	ENSPANG00000039329	ECT2 (ENSPANG00000018155)	ENSPANG00000048830	NCEH1 (ENSPANG00000050053)	TNFSF10 (ENSPANG00000008895)
Cercopithecinae_d	ANCESTRAL SPECIES	181	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837.m	ENSGT00940000156305	ENSGT00940000154863.db.d	ENSGT01000000214413.b.a.a	ENSGT00910000147799	ENSGT00390000013727.d	ENSGT00940000156335.o	ENSGT00530000063564.b.e.b	ENSGT00950000183039.B.a	ENSGT00910000147422	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b.d ##22	ENSGT01030000234598.a.b
Drill	MODERN SPECIES	788		NDUFB5 (ENSMLEG00000039784)	ENSMLEG00000035312	ACTL6A (ENSMLEG00000034199)	ENSMLEG00000039833	GNB4 (ENSMLEG00000013416)	ENSMLEG00000025437	MFN1 (ENSMLEG00000033980)	ENSMLEG00000034855	ENSMLEG00000034189	KCNMB3 (ENSMLEG00000032189)	ENSMLEG00000025740	PIK3CA (ENSMLEG00000034006)	ZMAT3 (ENSMLEG00000026279)	KCNMB2 (ENSMLEG00000037221)	TBL1XR1 (ENSMLEG00000031785) ##22	ENSMLEG00000044231
Sooty mangabey	MODERN SPECIES	245															ENSCATG00000038241	TBL1XR1 (ENSCATG00000034105) ##22	NAALADL2 (ENSCATG00000034975)
Macaca	ANCESTRAL SPECIES	5	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837.m	ENSGT00940000156305	ENSGT00940000156000.o.b	ENSGT00940000154863.db.d	ENSGT01000000214413.b.a.a	ENSGT00910000147799	ENSGT00390000013727.d	ENSGT00940000156335.o	ENSGT00950000183039.B.a	ENSGT00910000147422	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00860000135711.a	ENSGT01030000234598.a.b	ENSGT00940000154259.l.c.a.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000159720.x	ENSGT00940000156299	ENSGT00940000156699	ENSGT00550000076377	ENSGT00940000155147.n	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015
Macaca_a	ANCESTRAL SPECIES	5	ENSGT01100000263509.a.a.b.b.a.b.a.a.a.a	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837.m	ENSGT00940000156305	ENSGT00940000156000.o.b	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335.o	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT01100000263493.a.a.a.b.a.a.a.a.a.b.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000154259.l.c.a.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000159720.x	ENSGT00940000156299	ENSGT00940000156699	ENSGT01100000263493.a.a.b.b.a.a.b	ENSGT01100000263539.b.a.a.a.b.b.b.b.a.a.a.a	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT01100000263539.b.b.b.b.b.a.a.a.b.b
Crab-eating macaque	MODERN SPECIES	11	NDUFB5 (ENSMFAG00000042220)	ENSMFAG00000053669	ACTL6A (ENSMFAG00000030153)	ENSMFAG00000054257	ENSMFAG00000065242	ENSMFAG00000030517	GNB4 (ENSMFAG00000041470)	MFN1 (ENSMFAG00000003857)	ZNF639 (ENSMFAG00000002403)	KCNMB3 (ENSMFAG00000000185)	PIK3CA (ENSMFAG00000045156)	ZMAT3 (ENSMFAG00000021292)	KCNMB2 (ENSMFAG00000037847)	ENSMFAG00000060621	ENSMFAG00000050846	TBL1XR1 (ENSMFAG00000007211) ##22	ENSMFAG00000058101	ENSMFAG00000057081	NAALADL2 (ENSMFAG00000000195)	ENSMFAG00000064647	ENSMFAG00000024380	NLGN1 (ENSMFAG00000036767)	SPATA16 (ENSMFAG00000035575)	ENSMFAG00000035377	ECT2 (ENSMFAG00000041285)	NCEH1 (ENSMFAG00000043084)	ENSMFAG00000059827	ENSMFAG00000057116	TNFSF10 (ENSMFAG00000002428)	GHSR (ENSMFAG00000049961)	FNDC3B (ENSMFAG00000033083)
Rhesus	MODERN SPECIES	11	ENSMMUG00000050512	PEX5L (ENSMMUG00000003595)	USP13 (ENSMMUG00000003594)	NDUFB5 (ENSMMUG00000009746)	MRPL47 (ENSMMUG00000009744)	ACTL6A (ENSMMUG00000009742)	ENSMMUG00000054028	GNB4 (ENSMMUG00000004083)	MFN1 (ENSMMUG00000004079)	ZNF639 (ENSMMUG00000023078)	KCNMB3 (ENSMMUG00000005187)	PIK3CA (ENSMMUG00000005188)	ZMAT3 (ENSMMUG00000003216)	KCNMB2 (ENSMMUG00000014426)	ENSMMUG00000055098	TBL1XR1 (ENSMMUG00000019597) ##22	ENSMMUG00000059662	ENSMMUG00000010630	NAALADL2 (ENSMMUG00000045509)	ENSMMUG00000059733	NLGN1 (ENSMMUG00000004671)	SPATA16 (ENSMMUG00000040869)	ECT2 (ENSMMUG00000017014)	NCEH1 (ENSMMUG00000056425)	ENSMMUG00000051288	ENSMMUG00000059599	TNFSF10 (ENSMMUG00000019302)	GHSR (ENSMMUG00000004194)	FNDC3B (ENSMMUG00000004189)	ENSMMUG00000060393	TMEM212 (ENSMMUG00000043637)
Pig-tailed macaque	MODERN SPECIES	164	ENSMNEG00000041949	NDUFB5 (ENSMNEG00000000326)	ENSMNEG00000001870	ACTL6A (ENSMNEG00000031576)	ENSMNEG00000036357	ENSMNEG00000036158	GNB4 (ENSMNEG00000028705)	ENSMNEG00000010044	MFN1 (ENSMNEG00000040994)	ENSMNEG00000044183	KCNMB3 (ENSMNEG00000029975)	ENSMNEG00000035824	PIK3CA (ENSMNEG00000033970)	ZMAT3 (ENSMNEG00000036725)	KCNMB2 (ENSMNEG00000037391)	TBL1XR1 (ENSMNEG00000000982) ##22	ENSMNEG00000034366	NAALADL2 (ENSMNEG00000036084)	ENSMNEG00000007958	NLGN1 (ENSMNEG00000036920)	ENSMNEG00000010516
Platyrrhini	ANCESTRAL SPECIES	22															ENSGT00860000135711	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00390000001813	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509
Cebidae	ANCESTRAL SPECIES	22															ENSGT00860000135711	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00390000001813	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509
Cebidae_a	ANCESTRAL SPECIES	12															ENSGT00860000135711	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00390000001813	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509
Capuchin	MODERN SPECIES	300															ENSCCAG00000027939	TBL1XR1 (ENSCCAG00000032025) ##22	NAALADL2 (ENSCCAG00000024408)	ENSCCAG00000026585
Bolivian squirrel monkey	MODERN SPECIES	54														ENSSBOG00000029008	ENSSBOG00000023204	TBL1XR1 (ENSSBOG00000026417) ##22	ENSSBOG00000020649	NAALADL2 (ENSSBOG00000024409)	ENSSBOG00000019640	NLGN1 (ENSSBOG00000032454)	SPATA16 (ENSSBOG00000029188)	ECT2 (ENSSBOG00000030797)	NCEH1 (ENSSBOG00000031890)	TNFSF10 (ENSSBOG00000031527)	GHSR (ENSSBOG00000026382)	FNDC3B (ENSSBOG00000024022)	TMEM212 (ENSSBOG00000021220)	ENSSBOG00000016746	PLD1 (ENSSBOG00000024875)	TNIK (ENSSBOG00000027380)	SLC2A2 (ENSSBOG00000019413)
Marmoset	MODERN SPECIES	8							ENSCJAG00000070364	ENSCJAG00000080906	ENSCJAG00000073628	ENSCJAG00000079479	ENSCJAG00000078471	ENSCJAG00000073848	ENSCJAG00000085240	ENSCJAG00000077575	ENSCJAG00000076151	TBL1XR1 (ENSCJAG00000002082) ##22	ENSCJAG00000075698	ENSCJAG00000061157	ENSCJAG00000071672	NAALADL2 (ENSCJAG00000031211)	ENSCJAG00000075956	ENSCJAG00000085114	ENSCJAG00000077913	NLGN1 (ENSCJAG00000002114)	ENSCJAG00000081817	SPATA16 (ENSCJAG00000002119)	ENSCJAG00000073535	NCEH1 (ENSCJAG00000074580)	ECT2 (ENSCJAG00000002129)	ENSCJAG00000078530	TNFSF10 (ENSCJAG00000086478)
Mas night monkey	MODERN SPECIES	1061	CMC1 (ENSANAG00000033017)	ENSANAG00000028605	EOMES (ENSANAG00000033599)	SLC4A7 (ENSANAG00000033803)	NEK10 (ENSANAG00000020680)	LRRC3B (ENSANAG00000019390)	OXSM (ENSANAG00000031063)	NGLY1 (ENSANAG00000021060)	TOP2B (ENSANAG00000027435)	RARB (ENSANAG00000036254)	THRB (ENSANAG00000034995)	NR1D2 (ENSANAG00000023537)	ENSANAG00000006330	ENSANAG00000034359	ENSANAG00000031597	TBL1XR1 (ENSANAG00000029088) ##22	ENSANAG00000020135
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	3930																TBL1XR1 (ENSTSYG00000007886) ##22
Tarsier	MODERN SPECIES	2764																ENSTSYG00000029650 ##22
Strepsirrhini	ANCESTRAL SPECIES	1	ENSGT00940000155931	ENSGT00910000147128	ENSGT00940000157401	ENSGT00390000009980.p	ENSGT00960000190585	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00860000135711	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT01010000223088	ENSGT00950000183196.B	ENSGT00940000182224	ENSGT00940000155708	ENSGT00390000003738.a.b
Lemuriformes	ANCESTRAL SPECIES	9	ENSGT00940000155931	ENSGT00910000147128	ENSGT00940000157401	ENSGT00390000009980.p	ENSGT00960000190585	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00860000135711	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT01010000223088	ENSGT00950000183196.B	ENSGT00940000182224	ENSGT00940000155708	ENSGT00390000003738.a.b
Mouse lemur	MODERN SPECIES		TTC14 (ENSMICG00000049351)	PEX5L (ENSMICG00000048938)	ENSMICG00000049219	USP13 (ENSMICG00000049124)	ENSMICG00000049551	MRPL47 (ENSMICG00000049377)	ACTL6A (ENSMICG00000049032)	GNB4 (ENSMICG00000049251)	MFN1 (ENSMICG00000049257)	ENSMICG00000048810	KCNMB3 (ENSMICG00000048999)	PIK3CA (ENSMICG00000049155)	ZMAT3 (ENSMICG00000049501)	KCNMB2 (ENSMICG00000049491)	ENSMICG00000049180	TBL1XR1 (ENSMICG00000049448) ##22	ENSMICG00000048980	NAALADL2 (ENSMICG00000048670)	NLGN1 (ENSMICG00000049574)	SPATA16 (ENSMICG00000049271)	ECT2 (ENSMICG00000049582)	NCEH1 (ENSMICG00000049131)	TNFSF10 (ENSMICG00000049347)	GHSR (ENSMICG00000049355)	FNDC3B (ENSMICG00000049279)	TMEM212 (ENSMICG00000048602)	PLD1 (ENSMICG00000049434)	ENSMICG00000049473	TNIK (ENSMICG00000049397)	ENSMICG00000049283	SLC2A2 (ENSMICG00000049076)
Lemuriformes_a	ANCESTRAL SPECIES	9	ENSGT00390000013701	ENSGT00940000155931	ENSGT00910000147128	ENSGT00940000157401	ENSGT00390000009980.p	ENSGT00960000190585	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT01010000223088	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509
Coquerels sifaka	MODERN SPECIES	191																TBL1XR1 (ENSPCOG00000024766) ##22	ENSPCOG00000016264	ENSPCOG00000011977	NLGN1 (ENSPCOG00000007226)	ENSPCOG00000011665	SPATA16 (ENSPCOG00000015351)	ECT2 (ENSPCOG00000027208)	ENSPCOG00000022446	NCEH1 (ENSPCOG00000004999)	TNFSF10 (ENSPCOG00000024107)	GHSR (ENSPCOG00000025671)	FNDC3B (ENSPCOG00000021925)	TMEM212 (ENSPCOG00000011596)	PLD1 (ENSPCOG00000000579)	ENSPCOG00000024932	TNIK (ENSPCOG00000021438)
Greater bamboo lemur	MODERN SPECIES	410											GPC5 (ENSPSMG00000015390)	ENSPSMG00000015400	KCNMB2 (ENSPSMG00000015503)	ENSPSMG00000015513	ENSPSMG00000015530	TBL1XR1 (ENSPSMG00000015636) ##22	NAALADL2 (ENSPSMG00000015690)	NLGN1 (ENSPSMG00000015706)	ENSPSMG00000015718	SPATA16 (ENSPSMG00000015748)	ECT2 (ENSPSMG00000015943)	NCEH1 (ENSPSMG00000016040)	TNFSF10 (ENSPSMG00000016074)	GHSR (ENSPSMG00000016081)	FNDC3B (ENSPSMG00000016159)	TMEM212 (ENSPSMG00000016184)	PLD1 (ENSPSMG00000016300)	TNIK (ENSPSMG00000016825)
Bushbaby	MODERN SPECIES	193	ENSOGAG00000026587	PEX5L (ENSOGAG00000013877)	USP13 (ENSOGAG00000013871)	NDUFB5 (ENSOGAG00000016966)	MRPL47 (ENSOGAG00000016957)	ACTL6A (ENSOGAG00000016951)	GNB4 (ENSOGAG00000000877)	MFN1 (ENSOGAG00000000876)	ENSOGAG00000034726	KCNMB3 (ENSOGAG00000006601)	PIK3CA (ENSOGAG00000006592)	ENSOGAG00000027303	ZMAT3 (ENSOGAG00000003252)	KCNMB2 (ENSOGAG00000015737)	ENSOGAG00000034666	TBL1XR1 (ENSOGAG00000006708) ##22	NAALADL2 (ENSOGAG00000005833)	NLGN1 (ENSOGAG00000012761)	SPATA16 (ENSOGAG00000001358)	ECT2 (ENSOGAG00000003365)	NCEH1 (ENSOGAG00000000976)	TNFSF10 (ENSOGAG00000009094)	GHSR (ENSOGAG00000033442)	FNDC3B (ENSOGAG00000007902)	PLD1 (ENSOGAG00000010239)
Euarchontoglires_A	ANCESTRAL SPECIES	2	ENSGT00940000155931	ENSGT00910000147128	ENSGT00940000157401	ENSGT00390000009980	ENSGT00960000190585	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00910000147422	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00860000135711	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000182224	ENSGT00940000163015	ENSGT00940000155708
Tree shrew	DUPLICATION
Tree shrew	MODERN SPECIES	10167																ENSTBEG00000013331 ##22
Tree shrew	MODERN SPECIES	4136																ENSTBEG00000004836 ##22
Glires	ANCESTRAL SPECIES	2	ENSGT00940000155931	ENSGT00910000147128	ENSGT00940000157401	ENSGT00390000009980	ENSGT00960000190585	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00910000147422	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00860000135711	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000182224	ENSGT00940000163015	ENSGT00940000155708
Lagomorpha	ANCESTRAL SPECIES	6	ENSGT00950000183189.a.b.a	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00910000147128	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000155893.b	ENSGT00890000139496	ENSGT00940000158435	ENSGT00940000153497.E	ENSGT00940000154964
Rabbit	MODERN SPECIES	5	FXR1 (ENSOCUG00000023518)	CCDC39 (ENSOCUG00000000812)	TTC14 (ENSOCUG00000000806)	PEX5L (ENSOCUG00000006053)	ENSOCUG00000039309	USP13 (ENSOCUG00000006043)	NDUFB5 (ENSOCUG00000017887)	MRPL47 (ENSOCUG00000017886)	ACTL6A (ENSOCUG00000017883)	GNB4 (ENSOCUG00000000931)	MFN1 (ENSOCUG00000000928)	KCNMB3 (ENSOCUG00000010643)	PIK3CA (ENSOCUG00000010631)	ZMAT3 (ENSOCUG00000004658)	KCNMB2 (ENSOCUG00000005494)	TBL1XR1 (ENSOCUG00000017078) ##22	ENSOCUG00000039529	ENSOCUG00000031152	ENSOCUG00000031291	ENSOCUG00000020904	ENSOCUG00000006064	NAALADL2 (ENSOCUG00000002042)	ENSOCUG00000032927	NLGN1 (ENSOCUG00000009269)	ENSOCUG00000032329	ENSOCUG00000037918	SPATA16 (ENSOCUG00000004746)	ENSOCUG00000035488	ENSOCUG00000030050	ECT2 (ENSOCUG00000009484)	NCEH1 (ENSOCUG00000005345)
Pika	MODERN SPECIES	3088													SPOP (ENSOPRG00000000886)	NGFR (ENSOPRG00000000879)	PHB1 (ENSOPRG00000000868)	TBL1XR1 (ENSOPRG00000000857) ##22
Rodentia	ANCESTRAL SPECIES	2	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00960000190585	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00910000147422	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00860000135711	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000182224	ENSGT00940000163015	ENSGT00940000155708
Rodentia_B	ANCESTRAL SPECIES	2	ENSGT00950000183189.a.b.a	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000182224	ENSGT00940000163015	ENSGT00940000155708	ENSGT00390000003738.a.b
Kangaroo rat	MODERN SPECIES	349															Kcnmb2 (ENSDORG00000007718)	Tbl1xr1 (ENSDORG00000016259) ##22	Naaladl2 (ENSDORG00000004371)	Nlgn1 (ENSDORG00000004771)	Spata16 (ENSDORG00000006630)	Ect2 (ENSDORG00000004898)	Nceh1 (ENSDORG00000029369)	Tnfsf10 (ENSDORG00000025688)	Ghsr (ENSDORG00000013291)	ENSDORG00000027147	Pld1 (ENSDORG00000011673)	Tnik (ENSDORG00000004287)	Slc2a2 (ENSDORG00000004280)	Eif5a2 (ENSDORG00000014800)	Rpl22l1 (ENSDORG00000005926)	Slc7a14 (ENSDORG00000015452)	Cldn11 (ENSDORG00000015448)
Myomorpha	ANCESTRAL SPECIES	38	ENSGT00950000183189.a.b.a	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000182224	ENSGT00940000163015	ENSGT00940000155708	ENSGT00390000003738.a.b
Muroidea	ANCESTRAL SPECIES	44																ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000182224	ENSGT00940000163015	ENSGT00940000155708	ENSGT00390000003738.a.b
Muroidea_A	ANCESTRAL SPECIES	5								ENSGT00940000155866	ENSGT00900000143480	ENSGT00390000015458	ENSGT00910000144305	ENSGT00940000154674	ENSGT00940000161551	ENSGT00940000157819	ENSGT01050000244888.b.a.c.b.h	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000182224	ENSGT00940000163015	ENSGT00940000155708	ENSGT00390000003738.a.b
Cricetidae	ANCESTRAL SPECIES	6								ENSGT00940000155866	ENSGT00900000143480	ENSGT00390000015458	ENSGT00910000144305	ENSGT00940000154674	ENSGT00940000161551	ENSGT00940000157819	ENSGT01050000244888.b.a.c.b.h	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509.xc.a	ENSGT00940000155893.b
Cricetinae	ANCESTRAL SPECIES	13	ENSGT01040000240406.B	ENSGT01100000263494.a.a.a.a.a.c.b	ENSGT01100000263494.a.a.a.a.a.c.a	ENSGT01100000263494.a.a.a.a.a.d.a	ENSGT01100000263494.a.a.a.a.a.d.b.c	ENSGT00940000160217	ENSGT00940000160763	ENSGT00940000155866	ENSGT00900000143480	ENSGT00390000015458	ENSGT00910000144305	ENSGT00940000154674	ENSGT00940000161551	ENSGT00940000157819	ENSGT01050000244888.b.a.c.b.h	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509.xc.a	ENSGT00940000155893.b
Chinese hamster chok1gshd	MODERN SPECIES	352	ENSCGRG00001011916	ENSCGRG00001012166	Or9k7 (ENSCGRG00001011858)	Neurod4 (ENSCGRG00001001990)	Tespa1 (ENSCGRG00001000048)	Cp (ENSCGRG00001012365)	Hps3 (ENSCGRG00001011346)	Hltf (ENSCGRG00001009501)	Gyg (ENSCGRG00001022471)	Cpa3 (ENSCGRG00001015838)	Cpb1 (ENSCGRG00001021645)	Agtr1b (ENSCGRG00001010827)	ENSCGRG00001009352	ENSCGRG00001005511	ENSCGRG00001002531	Tbl1xr1 (ENSCGRG00001012826) ##22	Naaladl2 (ENSCGRG00001014389)	Nlgn1 (ENSCGRG00001012016)	Spata16 (ENSCGRG00001013349)	Ect2 (ENSCGRG00001011775)	Nceh1 (ENSCGRG00001007699)	Tnfsf10 (ENSCGRG00001006321)	Ghsr (ENSCGRG00001022780)	Fndc3b (ENSCGRG00001016574)	Tmem212 (ENSCGRG00001018197)	Pld1 (ENSCGRG00001023076)	Tnik (ENSCGRG00001021152)	Slc2a2 (ENSCGRG00001016694)	Eif5a2 (ENSCGRG00001021268)	Rpl22l1 (ENSCGRG00001019790)	Slc7a14 (ENSCGRG00001013994)
Golden Hamster	MODERN SPECIES	827																Tbl1xr1 (ENSMAUG00000000117) ##22
Cricetidae_B	ANCESTRAL SPECIES	55									ENSGT00940000155866	ENSGT00390000015458	ENSGT00910000144305	ENSGT00940000154674	ENSGT00940000161551	ENSGT00940000157819	ENSGT01050000244888.b.a.c.b.h	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509.xc.a	ENSGT00940000155893.b
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	19	ENSPEMG00000026454	Anxa5 (ENSPEMG00000015439)	ENSPEMG00000025311	ENSPEMG00000008579	ENSPEMG00000013052	ENSPEMG00000025409	ENSPEMG00000026230	Cp (ENSPEMG00000013146)	Hps3 (ENSPEMG00000006862)	Hltf (ENSPEMG00000016172)	Gyg (ENSPEMG00000016029)	Cpa3 (ENSPEMG00000000978)	Cpb1 (ENSPEMG00000015871)	Agtr1b (ENSPEMG00000026806)	ENSPEMG00000022198	ENSPEMG00000023778 ##22	ENSPEMG00000023072	ENSPEMG00000030574	ENSPEMG00000029143	ENSPEMG00000025069	ENSPEMG00000025453	Smim43 (ENSPEMG00000027033)	Exosc9 (ENSPEMG00000000544)	Ccna2 (ENSPEMG00000009831)	Bbs7 (ENSPEMG00000011833)	Trpc3 (ENSPEMG00000010325)	Bltp1 (ENSPEMG00000000775)	Adad1 (ENSPEMG00000013728)	Il2 (ENSPEMG00000006965)	Il21 (ENSPEMG00000013277)	Cetn4 (ENSPEMG00000003679)
Northern American deer mouse	MODERN SPECIES	17	Pdk1 (ENSPEMG00000002841)	Rapgef4 (ENSPEMG00000009780)	Map3k20 (ENSPEMG00000000421)	Cdca7 (ENSPEMG00000022184)	Sp3 (ENSPEMG00000022766)	Ola1 (ENSPEMG00000021970)	Sp9 (ENSPEMG00000029035)	Cir1 (ENSPEMG00000022223)	Scrn3 (ENSPEMG00000022424)	Gpr155 (ENSPEMG00000022602)	Wipf1 (ENSPEMG00000013848)	Chrna1 (ENSPEMG00000012571)	Chn1 (ENSPEMG00000022535)	Atf2 (ENSPEMG00000021625)	Atp5g3 (ENSPEMG00000023766)	ENSPEMG00000008662 ##22	Lnpk (ENSPEMG00000017827)	Evx2 (ENSPEMG00000022145)	Hoxd13 (ENSPEMG00000022412)	Hoxd12 (ENSPEMG00000019240)	ENSPEMG00000018816	Hoxd10 (ENSPEMG00000030445)	Hoxd9 (ENSPEMG00000006162)	ENSPEMG00000028623	ENSPEMG00000029322	Hoxd4 (ENSPEMG00000024627)	Hoxd3 (ENSPEMG00000028862)	Hoxd1 (ENSPEMG00000021389)	Mtx2 (ENSPEMG00000022093)	Hnrnpa3 (ENSPEMG00000021885)	Nfe2l2 (ENSPEMG00000023181)
Prairie vole	MODERN SPECIES		Slc26a4 (ENSMOCG00000022260)	Cbll1 (ENSMOCG00000016689)	Slc26a3 (ENSMOCG00000019595)	Dld (ENSMOCG00000021009)	Lamb1 (ENSMOCG00000014282)	ENSMOCG00000017600	ENSMOCG00000019158	Cp (ENSMOCG00000016138)	Hps3 (ENSMOCG00000010766)	Hltf (ENSMOCG00000019747)	Gyg (ENSMOCG00000013677)	Cpa3 (ENSMOCG00000020637)	Cpb1 (ENSMOCG00000020527)	ENSMOCG00000007296	ENSMOCG00000006252	Tbl1xr1 (ENSMOCG00000022629) ##22	Nlgn1 (ENSMOCG00000006420)	Spata16 (ENSMOCG00000014167)	Ect2 (ENSMOCG00000016900)	Nceh1 (ENSMOCG00000021848)	Tnfsf10 (ENSMOCG00000001683)	Ghsr (ENSMOCG00000010453)	Fndc3b (ENSMOCG00000018057)	Tmem212 (ENSMOCG00000014617)	Pld1 (ENSMOCG00000019861)	Tnik (ENSMOCG00000002021)	Slc2a2 (ENSMOCG00000016334)	Ankrd50 (ENSMOCG00000004523)	Fat4 (ENSMOCG00000018552)	Intu (ENSMOCG00000013260)	Slc25a31 (ENSMOCG00000017699)
Murinae	ANCESTRAL SPECIES	5	ENSGT00940000162962	ENSGT00940000153141.B.b	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a	ENSGT00940000154473.a	ENSGT00940000155866	ENSGT00390000015458	ENSGT00910000144305	ENSGT00940000154674	ENSGT00940000161551	ENSGT00940000157819	ENSGT01050000244888.b.a.c.b.h	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000182224	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509.xc.a
Mus	ANCESTRAL SPECIES	7	ENSGT00940000162962	ENSGT00940000153141.B.b	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a	ENSGT00940000154473.a	ENSGT00940000155866	ENSGT00390000015458	ENSGT00910000144305	ENSGT00940000154674	ENSGT00940000161551	ENSGT00940000157819	ENSGT01050000244888.b.a.c.b.h	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000182224	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509.xc.a
Mus_A	ANCESTRAL SPECIES	9	ENSGT00940000162962	ENSGT00940000153141.B.b	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a	ENSGT00940000154473.a	ENSGT00940000155866	ENSGT00390000015458	ENSGT00910000144305	ENSGT00940000154674	ENSGT00940000161551	ENSGT00940000157819	ENSGT01050000244888.b.a.c.b.h	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015.b	ENSGT00950000183196.B	ENSGT00940000182224	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509.xc.a
Ryukyu mouse	MODERN SPECIES	12	Armc1 (MGP_CAROLIEiJ_G0024868)	Mtfr1 (MGP_CAROLIEiJ_G0024869)	Pde7a (MGP_CAROLIEiJ_G0024870)	Dnajc5b (MGP_CAROLIEiJ_G0024871)	MGP_CAROLIEiJ_G0024872	MGP_CAROLIEiJ_G0024873	Trim55 (MGP_CAROLIEiJ_G0024874)	Crh (MGP_CAROLIEiJ_G0024875)	Cp (MGP_CAROLIEiJ_G0024876)	Hps3 (MGP_CAROLIEiJ_G0024877)	Hltf (MGP_CAROLIEiJ_G0024878)	Gyg (MGP_CAROLIEiJ_G0024879)	Cpa3 (MGP_CAROLIEiJ_G0024880)	Cpb1 (MGP_CAROLIEiJ_G0024881)	Agtr1b (MGP_CAROLIEiJ_G0024882)	Tbl1xr1 (MGP_CAROLIEiJ_G0024883) ##22	Naaladl2 (MGP_CAROLIEiJ_G0024884)	Nlgn1 (MGP_CAROLIEiJ_G0024885)	Spata16 (MGP_CAROLIEiJ_G0024886)	MGP_CAROLIEiJ_G0024887	Nceh1 (MGP_CAROLIEiJ_G0024888)	Tnfsf10 (MGP_CAROLIEiJ_G0024889)	Ghsr (MGP_CAROLIEiJ_G0024890)	Fndc3b (MGP_CAROLIEiJ_G0024891)	Tmem212 (MGP_CAROLIEiJ_G0024892)	Pld1 (MGP_CAROLIEiJ_G0024893)	Tnik (MGP_CAROLIEiJ_G0024894)	Slc2a2 (MGP_CAROLIEiJ_G0024895)	Eif5a2 (MGP_CAROLIEiJ_G0024896)	Rpl22l1 (MGP_CAROLIEiJ_G0024897)	Egfem1 (MGP_CAROLIEiJ_G0024898)
Mus_B	ANCESTRAL SPECIES	8	ENSGT00940000162962	ENSGT00940000153141.B.b	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a	ENSGT00940000154473.a	ENSGT00940000155866	ENSGT00390000015458	ENSGT00910000144305	ENSGT00940000154674	ENSGT00940000161551	ENSGT00940000157819	ENSGT01050000244888.b.a.c.b.h	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015.b	ENSGT00950000183196.B	ENSGT00940000182224	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509.xc.a
Mouse	MODERN SPECIES	12	Bhlhe22 (ENSMUSG00000025128)	Cyp7b1 (ENSMUSG00000039519)	Armc1 (ENSMUSG00000027599)	Mtfr1 (ENSMUSG00000027601)	Pde7a (ENSMUSG00000069094)	Dnajc5b (ENSMUSG00000027606)	Trim55 (ENSMUSG00000060913)	Crh (ENSMUSG00000049796)	Cp (ENSMUSG00000003617)	Hps3 (ENSMUSG00000027615)	Hltf (ENSMUSG00000002428)	Gyg (ENSMUSG00000019528)	Cpa3 (ENSMUSG00000001865)	Cpb1 (ENSMUSG00000011463)	Agtr1b (ENSMUSG00000054988)	Tbl1xr1 (ENSMUSG00000027630) ##22	Naaladl2 (ENSMUSG00000102758)	Nlgn1 (ENSMUSG00000063887)	Spata16 (ENSMUSG00000039335)	Ect2 (ENSMUSG00000027699)	Nceh1 (ENSMUSG00000027698)	Tnfsf10 (ENSMUSG00000039304)	Ghsr (ENSMUSG00000051136)	Fndc3b (ENSMUSG00000039286)	Tmem212 (ENSMUSG00000043164)	Pld1 (ENSMUSG00000027695)	Tnik (ENSMUSG00000027692)	Slc2a2 (ENSMUSG00000027690)	Eif5a2 (ENSMUSG00000050192)	Rpl22l1 (ENSMUSG00000039221)	Gm1527 (ENSMUSG00000074655)
Mus_C	ANCESTRAL SPECIES	6	ENSGT00940000153141.B.b	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00860000135717	ENSGT00940000154004.a	ENSGT00940000154473.a	ENSGT00940000155866	ENSGT00390000015458	ENSGT00910000144305	ENSGT00940000154674	ENSGT00940000161551	ENSGT00940000157819	ENSGT01050000244888.b.a.c.b.h	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015.b	ENSGT00950000183196.B	ENSGT00940000182224	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509.xc.a
Steppe mouse	MODERN SPECIES	3284																Tbl1xr1 (ENSMSIG00000003957) ##22	ENSMSIG00000003917	ENSMSIG00000003888	Naaladl2 (ENSMSIG00000003840)	ENSMSIG00000003831
spretus	MODERN SPECIES	12	Armc1 (MGP_SPRETEiJ_G0025799)	Mtfr1 (MGP_SPRETEiJ_G0025800)	Pde7a (MGP_SPRETEiJ_G0025801)	Dnajc5b (MGP_SPRETEiJ_G0025802)	MGP_SPRETEiJ_G0025803	Trim55 (MGP_SPRETEiJ_G0025804)	Crh (MGP_SPRETEiJ_G0025805)	MGP_SPRETEiJ_G0025806	Cp (MGP_SPRETEiJ_G0025807)	Hps3 (MGP_SPRETEiJ_G0025808)	Hltf (MGP_SPRETEiJ_G0025809)	Gyg (MGP_SPRETEiJ_G0025810)	Cpb1 (MGP_SPRETEiJ_G0025811)	Cpa3 (MGP_SPRETEiJ_G0025812)	Agtr1b (MGP_SPRETEiJ_G0025813)	Tbl1xr1 (MGP_SPRETEiJ_G0025814) ##22	MGP_SPRETEiJ_G0025815	MGP_SPRETEiJ_G0025816	Nlgn1 (MGP_SPRETEiJ_G0025817)	Spata16 (MGP_SPRETEiJ_G0025818)	Ect2 (MGP_SPRETEiJ_G0025819)	Nceh1 (MGP_SPRETEiJ_G0025820)	Tnfsf10 (MGP_SPRETEiJ_G0025821)	Ghsr (MGP_SPRETEiJ_G0025822)	Fndc3b (MGP_SPRETEiJ_G0025823)	Tmem212 (MGP_SPRETEiJ_G0025824)	Pld1 (MGP_SPRETEiJ_G0025825)	MGP_SPRETEiJ_G0025826	Tnik (MGP_SPRETEiJ_G0025827)	Slc2a2 (MGP_SPRETEiJ_G0025828)	Eif5a2 (MGP_SPRETEiJ_G0025830)
Shrew mouse	MODERN SPECIES	17	Cyp7b1 (MGP_PahariEiJ_G0026313)	Armc1 (MGP_PahariEiJ_G0026314)	Mtfr1 (MGP_PahariEiJ_G0026315)	Pde7a (MGP_PahariEiJ_G0026316)	Dnajc5b (MGP_PahariEiJ_G0026317)	MGP_PahariEiJ_G0026318	Trim55 (MGP_PahariEiJ_G0026319)	Crh (MGP_PahariEiJ_G0026320)	Cp (MGP_PahariEiJ_G0026321)	Hps3 (MGP_PahariEiJ_G0026322)	Hltf (MGP_PahariEiJ_G0026323)	Gyg (MGP_PahariEiJ_G0026324)	Cpa3 (MGP_PahariEiJ_G0026325)	Cpb1 (MGP_PahariEiJ_G0026326)	Agtr1b (MGP_PahariEiJ_G0026327)	Tbl1xr1 (MGP_PahariEiJ_G0026328) ##22	Naaladl2 (MGP_PahariEiJ_G0026329)	Nlgn1 (MGP_PahariEiJ_G0026330)	Spata16 (MGP_PahariEiJ_G0026331)	Ect2 (MGP_PahariEiJ_G0026332)	Nceh1 (MGP_PahariEiJ_G0026333)	Tnfsf10 (MGP_PahariEiJ_G0026334)	Ghsr (MGP_PahariEiJ_G0026335)	Fndc3b (MGP_PahariEiJ_G0026336)	Tmem212 (MGP_PahariEiJ_G0026337)	Pld1 (MGP_PahariEiJ_G0026338)	Tnik (MGP_PahariEiJ_G0026339)	MGP_PahariEiJ_G0026340	Eif5a2 (MGP_PahariEiJ_G0026341)	Rpl22l1 (MGP_PahariEiJ_G0026342)	Egfem1 (MGP_PahariEiJ_G0026343)
Rat	MODERN SPECIES	11	AABR07009572.1 (ENSRNOG00000013038)	Dnajc5b (ENSRNOG00000012851)	Trim55 (ENSRNOG00000012723)	Crh (ENSRNOG00000012703)	ENSRNOG00000064644	ENSRNOG00000069706	Cp (ENSRNOG00000011913)	Hps3 (ENSRNOG00000031406)	Hltf (ENSRNOG00000000082)	Gyg1 (ENSRNOG00000011146)	Cpa3 (ENSRNOG00000011181)	Cpb1 (ENSRNOG00000030904)	Agtr1b (ENSRNOG00000010640)	ENSRNOG00000070560	LOC120100784 (ENSRNOG00000031378)	Tbl1xr1 (ENSRNOG00000011216) ##22	Naaladl2 (ENSRNOG00000065021)	ENSRNOG00000033028	Nlgn1 (ENSRNOG00000032576)	Spata16 (ENSRNOG00000024521)	Ect2 (ENSRNOG00000024365)	Nceh1 (ENSRNOG00000013313)	Tnfsf10 (ENSRNOG00000067968)	Ghsr (ENSRNOG00000024119)	Fndc3b (ENSRNOG00000024089)	Tmem212 (ENSRNOG00000012608)	Pld1 (ENSRNOG00000028156)	Tnik (ENSRNOG00000012422)	Slc2a2 (ENSRNOG00000011875)	Eif5a2 (ENSRNOG00000011859)	Rpl22l1 (ENSRNOG00000011817)
Upper Galilee mountains blind mole rat	MODERN SPECIES	360																Tbl1xr1 (ENSNGAG00000014529) ##22
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	47	Fxr1 (ENSJJAG00000019175)	Ccdc39 (ENSJJAG00000016989)	ENSJJAG00000023040	Pex5l (ENSJJAG00000000620)	Usp13 (ENSJJAG00000018696)	Ndufb5 (ENSJJAG00000012502)	Mrpl47 (ENSJJAG00000020002)	Actl6a (ENSJJAG00000017810)	ENSJJAG00000023681	Mfn1 (ENSJJAG00000019731)	ENSJJAG00000024013	Kcnmb3 (ENSJJAG00000023050)	Pik3ca (ENSJJAG00000021453)	Zmat3 (ENSJJAG00000004288)	Kcnmb2 (ENSJJAG00000021914)	ENSJJAG00000012112 ##22	Naaladl2 (ENSJJAG00000001804)	Nlgn1 (ENSJJAG00000018596)	Spata16 (ENSJJAG00000021398)	Ect2 (ENSJJAG00000001186)	Nceh1 (ENSJJAG00000023562)	Ghsr (ENSJJAG00000022390)	ENSJJAG00000023375	Tmem212 (ENSJJAG00000019737)	Pld1 (ENSJJAG00000017079)	Tnik (ENSJJAG00000015526)	Slc2a2 (ENSJJAG00000022990)	ENSJJAG00000014550	Rpl22l1 (ENSJJAG00000016622)	ENSJJAG00000003376	Slc7a14 (ENSJJAG00000000839)
Lesser Egyptian jerboa	MODERN SPECIES	179	Avpi1 (ENSJJAG00000021703)	Marveld1 (ENSJJAG00000012601)	Zfyve27 (ENSJJAG00000005638)	Sfrp5 (ENSJJAG00000022836)	Golga7b (ENSJJAG00000021511)	Crtac1 (ENSJJAG00000020645)	ENSJJAG00000020251	Loxl4 (ENSJJAG00000013296)	Pyroxd2 (ENSJJAG00000022532)	Hps1 (ENSJJAG00000017073)	Hpse2 (ENSJJAG00000015190)	Cnnm1 (ENSJJAG00000013432)	Got1 (ENSJJAG00000019106)	Nkx2-3 (ENSJJAG00000017127)	Slc25a28 (ENSJJAG00000016611)	ENSJJAG00000015832 ##22	Entpd7 (ENSJJAG00000015308)	ENSJJAG00000012745	Cox15 (ENSJJAG00000011715)	ENSJJAG00000010550	Abcc2 (ENSJJAG00000020088)	Dnmbp (ENSJJAG00000017540)	Cpn1 (ENSJJAG00000016862)	Erlin1 (ENSJJAG00000016685)	ENSJJAG00000016093	Cwf19l1 (ENSJJAG00000015368)	ENSJJAG00000015079	Pkd2l1 (ENSJJAG00000013834)	ENSJJAG00000012197	ENSJJAG00000011341	Scd4 (ENSJJAG00000010740)
Rodentia_A	ANCESTRAL SPECIES	5	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00960000190585	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00910000147422	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00860000135711	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509
Hystricomorpha	ANCESTRAL SPECIES	6	ENSGT00950000183189.a.b.a	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509	ENSGT00940000155893.b
Hystricomorpha_a	ANCESTRAL SPECIES	4	ENSGT00950000183189.a.b.a	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509	ENSGT00940000155893.b
Hystricomorpha_b	ANCESTRAL SPECIES	9	ENSGT00950000183189.a.b.a	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b.n.a	ENSGT00940000154509	ENSGT00940000155893.b
Long-tailed chinchilla	MODERN SPECIES	127	FXR1 (ENSCLAG00000014182)	CCDC39 (ENSCLAG00000012683)	TTC14 (ENSCLAG00000013302)	PEX5L (ENSCLAG00000014042)	USP13 (ENSCLAG00000015308)	ENSCLAG00000014903	ENSCLAG00000015039	ACTL6A (ENSCLAG00000012251)	GNB4 (ENSCLAG00000015522)	MFN1 (ENSCLAG00000015912)	ZNF639 (ENSCLAG00000011168)	KCNMB3 (ENSCLAG00000014741)	PIK3CA (ENSCLAG00000015135)	ZMAT3 (ENSCLAG00000013464)	KCNMB2 (ENSCLAG00000014319)	TBL1XR1 (ENSCLAG00000013893) ##22	ENSCLAG00000018045	NAALADL2 (ENSCLAG00000012428)	NLGN1 (ENSCLAG00000010604)	SPATA16 (ENSCLAG00000016484)	ECT2 (ENSCLAG00000015030)	ENSCLAG00000013454	NCEH1 (ENSCLAG00000011865)	ENSCLAG00000017893	TNFSF10 (ENSCLAG00000015552)	GHSR (ENSCLAG00000012973)	FNDC3B (ENSCLAG00000015717)	TMEM212 (ENSCLAG00000016037)	PLD1 (ENSCLAG00000012419)	TNIK (ENSCLAG00000011229)	SLC2A2 (ENSCLAG00000014131)
Degu	MODERN SPECIES	151								RIPK2 (ENSODEG00000005493)	ENSODEG00000003110	DECR1 (ENSODEG00000003173)	CALB1 (ENSODEG00000003248)	KCNMB3 (ENSODEG00000003258)	PIK3CA (ENSODEG00000003287)	ZMAT3 (ENSODEG00000003313)	KCNMB2 (ENSODEG00000003349)	TBL1XR1 (ENSODEG00000003370) ##22	ENSODEG00000003408	ENSODEG00000003420	SOX3 (ENSODEG00000003426)	ENSODEG00000003432	ENSODEG00000003458	ATP11C (ENSODEG00000003493)	MCF2 (ENSODEG00000003577)	F9 (ENSODEG00000003689)	FGF13 (ENSODEG00000003799)	ENSODEG00000003824	ENSODEG00000003847	ENSODEG00000003878	ENSODEG00000005517	ENSODEG00000019174	ENSODEG00000019167
Guinea pig	MODERN SPECIES	47	FXR1 (ENSCPOG00000010418)	CCDC39 (ENSCPOG00000015314)	TTC14 (ENSCPOG00000015311)	PEX5L (ENSCPOG00000002319)	USP13 (ENSCPOG00000002315)	NDUFB5 (ENSCPOG00000036110)	ENSCPOG00000002312	ACTL6A (ENSCPOG00000025370)	GNB4 (ENSCPOG00000034790)	MFN1 (ENSCPOG00000033188)	ZNF639 (ENSCPOG00000039664)	KCNMB3 (ENSCPOG00000025991)	PIK3CA (ENSCPOG00000006574)	ZMAT3 (ENSCPOG00000003865)	KCNMB2 (ENSCPOG00000013955)	TBL1XR1 (ENSCPOG00000005472) ##22	NAALADL2 (ENSCPOG00000013413)	NLGN1 (ENSCPOG00000005752)	SPATA16 (ENSCPOG00000006395)	ECT2 (ENSCPOG00000004744)	NCEH1 (ENSCPOG00000033460)	ENSCPOG00000024155	ENSCPOG00000024974	SULT1E1 (ENSCPOG00000013300)	ENSCPOG00000030416	ODAM (ENSCPOG00000008289)	ENSCPOG00000004871	AMTN (ENSCPOG00000001109)	AMBN (ENSCPOG00000001111)	ENAM (ENSCPOG00000013971)	Jchain (ENSCPOG00000031403)
Naked mole-rat female	DUPLICATION
Naked mole-rat female	DUPLICATION
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	16	ENSHGLG00000007812	TEX35 (ENSHGLG00000013167)	ENSHGLG00000035211	RASAL2 (ENSHGLG00000018984)	ENSHGLG00000019069	ENSHGLG00000049651	ENSHGLG00000015561	SEC16B (ENSHGLG00000008598)	BRINP2 (ENSHGLG00000013605)	ENSHGLG00000047079	ASTN1 (ENSHGLG00000018606)	PAPPA2 (ENSHGLG00000018177)	COP1 (ENSHGLG00000011161)	TNR (ENSHGLG00000013609)	ENSHGLG00000042366	ENSHGLG00000006944 ##22	KIAA0040 (ENSHGLG00000039513)	TNN (ENSHGLG00000009822)	MRPS14 (ENSHGLG00000005689)	CACYBP (ENSHGLG00000042513)	ENSHGLG00000043037	ENSHGLG00000049238	ENSHGLG00000019690	ENSHGLG00000035326	ENSHGLG00000049562	GPR52 (ENSHGLG00000042550)	ENSHGLG00000020421	ENSHGLG00000004714	ENSHGLG00000020503	ENSHGLG00000005120	ENSHGLG00000033461
Naked mole-rat female	MODERN SPECIES	28	SUSD5 (ENSHGLG00000040528)	ENSHGLG00000037082	ENSHGLG00000002747	FBXL2 (ENSHGLG00000002144)	UBP1 (ENSHGLG00000002333)	ENSHGLG00000003013	PDCD6IP (ENSHGLG00000004033)	ENSHGLG00000001187	ENSHGLG00000040644	ENSHGLG00000033661	ENSHGLG00000035031	ENSHGLG00000050797	ENSHGLG00000036492	ENSHGLG00000050645	ARPP21 (ENSHGLG00000001335)	ENSHGLG00000001835 ##22	STAC (ENSHGLG00000001907)	ENSHGLG00000039711	DCLK3 (ENSHGLG00000002384)	TRANK1 (ENSHGLG00000002458)	EPM2AIP1 (ENSHGLG00000038650)	MLH1 (ENSHGLG00000002978)	ENSHGLG00000003324	ENSHGLG00000045409	ENSHGLG00000041383	ITGA9 (ENSHGLG00000008865)	ENSHGLG00000007859	VILL (ENSHGLG00000034627)	PLCD1 (ENSHGLG00000019434)	DLEC1 (ENSHGLG00000011950)	ENSHGLG00000010813
Naked mole-rat female	MODERN SPECIES	27	MRPL47 (ENSHGLG00000033799)	ACTL6A (ENSHGLG00000013350)	GNB4 (ENSHGLG00000012880)	ENSHGLG00000044219	MFN1 (ENSHGLG00000012515)	ZNF639 (ENSHGLG00000050776)	KCNMB3 (ENSHGLG00000012132)	ENSHGLG00000011894	ZMAT3 (ENSHGLG00000011523)	ENSHGLG00000011277	KCNMB2 (ENSHGLG00000041894)	ENSHGLG00000016930	ENSHGLG00000038549	ENSHGLG00000019115	ENSHGLG00000050422	TBL1XR1 (ENSHGLG00000044077) ##22	ENSHGLG00000033259	ENSHGLG00000050637	NAALADL2 (ENSHGLG00000013839)	ENSHGLG00000042892	NLGN1 (ENSHGLG00000013440)	ENSHGLG00000048748	SPATA16 (ENSHGLG00000011913)	ENSHGLG00000003841	ENSHGLG00000011562	ECT2 (ENSHGLG00000011074)	NCEH1 (ENSHGLG00000010683)	TNFSF10 (ENSHGLG00000044629)	GHSR (ENSHGLG00000014950)	FNDC3B (ENSHGLG00000014877)	TMEM212 (ENSHGLG00000014698)
Naked mole-rat female	MODERN SPECIES	11	LSAMP (ENSHGLG00000013507)	ENSHGLG00000050494	GAP43 (ENSHGLG00000014273)	ENSHGLG00000038397	ENSHGLG00000046774	ENSHGLG00000006166	ZBTB20 (ENSHGLG00000014197)	TIGIT (ENSHGLG00000014219)	DRD3 (ENSHGLG00000018420)	ENSHGLG00000010705	ENSHGLG00000039283	CCDC191 (ENSHGLG00000011453)	ENSHGLG00000013354	ZDHHC23 (ENSHGLG00000047482)	GRAMD1C (ENSHGLG00000016163)	ENSHGLG00000050407 ##22	ATP6V1A (ENSHGLG00000012241)	NAA50 (ENSHGLG00000050182)	USF3 (ENSHGLG00000049683)	ENSHGLG00000050610	SIDT1 (ENSHGLG00000012121)	SPICE1 (ENSHGLG00000013844)	CFAP44 (ENSHGLG00000016857)	BOC (ENSHGLG00000016908)	NEPRO (ENSHGLG00000018829)	GTPBP8 (ENSHGLG00000018819)	ENSHGLG00000018706	ENSHGLG00000039135	ENSHGLG00000018701	ENSHGLG00000017568	CCDC80 (ENSHGLG00000010040)
Sciuridae	ANCESTRAL SPECIES	12	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980.k	ENSGT00960000190585	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00910000147422	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00860000135711	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01020000233244	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b
Marmotini	ANCESTRAL SPECIES	59	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980.k	ENSGT00960000190585	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00910000147422	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00860000135711	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01020000233244	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b.q.a
Alpin marmot	DUPLICATION
Alpin marmot	MODERN SPECIES	37	ENSMMMG00000003599	PEX5L (ENSMMMG00000003637)	USP13 (ENSMMMG00000004025)	NDUFB5 (ENSMMMG00000004098)	ENSMMMG00000004120	MRPL47 (ENSMMMG00000004133)	ACTL6A (ENSMMMG00000004175)	GNB4 (ENSMMMG00000004203)	MFN1 (ENSMMMG00000004267)	ENSMMMG00000004333	KCNMB3 (ENSMMMG00000004362)	ENSMMMG00000004373	PIK3CA (ENSMMMG00000004387)	ZMAT3 (ENSMMMG00000004454)	KCNMB2 (ENSMMMG00000004486)	ENSMMMG00000004514 ##22	ENSMMMG00000004587	NAALADL2 (ENSMMMG00000004611)	ENSMMMG00000004628	ENSMMMG00000004633	NLGN1 (ENSMMMG00000004664)	SPATA16 (ENSMMMG00000004708)	ECT2 (ENSMMMG00000004729)	ENSMMMG00000004880	NCEH1 (ENSMMMG00000004887)	TNFSF10 (ENSMMMG00000004911)	GHSR (ENSMMMG00000004921)	ENSMMMG00000004926	FNDC3B (ENSMMMG00000004936)	TMEM212 (ENSMMMG00000005043)	PLD1 (ENSMMMG00000005075)
Alpin marmot	MODERN SPECIES	69	C12orf57 (ENSMMMG00000016822)	PTPN6 (ENSMMMG00000016690)	PHB2 (ENSMMMG00000016672)	EMG1 (ENSMMMG00000016665)	LPCAT3 (ENSMMMG00000016656)	C1S (ENSMMMG00000016640)	C1R (ENSMMMG00000016634)	C1RL (ENSMMMG00000016631)	RBP5 (ENSMMMG00000016625)	CLSTN3 (ENSMMMG00000016592)	PEX5 (ENSMMMG00000016410)	ENSMMMG00000016404	ENSMMMG00000016218	ENSMMMG00000016202	ENSMMMG00000012230	ENSMMMG00000012196 ##22	ENSMMMG00000012083	ENSMMMG00000010702	ENSMMMG00000010675	ENSMMMG00000010670	CD163 (ENSMMMG00000010650)	ENSMMMG00000010622
Marmotini_b	ANCESTRAL SPECIES	149	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980.k	ENSGT00390000002837	ENSGT00940000156305	ENSGT00390000015224.c.b.b.a.a	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00910000147422	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00860000135711	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299.t
Arctic ground squirrel	MODERN SPECIES	22	PEX5L (ENSUPAG00010022611)	USP13 (ENSUPAG00010022684)	NDUFB5 (ENSUPAG00010022690)	MRPL47 (ENSUPAG00010022693)	ACTL6A (ENSUPAG00010022696)	ENSUPAG00010022699	GNB4 (ENSUPAG00010022702)	MFN1 (ENSUPAG00010022711)	ZNF639 (ENSUPAG00010022715)	ENSUPAG00010022718	KCNMB3 (ENSUPAG00010022719)	ENSUPAG00010022722	PIK3CA (ENSUPAG00010022723)	ZMAT3 (ENSUPAG00010022730)	KCNMB2 (ENSUPAG00010022732)	TBL1XR1 (ENSUPAG00010022733) ##22	ENSUPAG00010022737	NAALADL2 (ENSUPAG00010022740)	NLGN1 (ENSUPAG00010022744)	SPATA16 (ENSUPAG00010022746)
Squirrel	MODERN SPECIES	166	ENSSTOG00000003847	TTC14 (ENSSTOG00000003827)	PEX5L (ENSSTOG00000002383)	USP13 (ENSSTOG00000002367)	NDUFB5 (ENSSTOG00000010557)	MRPL47 (ENSSTOG00000032487)	ACTL6A (ENSSTOG00000010540)	ENSSTOG00000033903	GNB4 (ENSSTOG00000005210)	MFN1 (ENSSTOG00000005167)	ZNF639 (ENSSTOG00000001442)	KCNMB3 (ENSSTOG00000013715)	PIK3CA (ENSSTOG00000012906)	ZMAT3 (ENSSTOG00000028436)	KCNMB2 (ENSSTOG00000002726)	TBL1XR1 (ENSSTOG00000014252) ##22
Eurasian red squirrel	MODERN SPECIES	1	ENSSVLG00005007236	USP13 (ENSSVLG00005007303)	ENSSVLG00005007458	MRPL47 (ENSSVLG00005007505)	ENSSVLG00005007595	GNB4 (ENSSVLG00005007689)	MFN1 (ENSSVLG00005007726)	ENSSVLG00005007788	ENSSVLG00005007822	KCNMB3 (ENSSVLG00005007870)	PIK3CA (ENSSVLG00005007992)	ZMAT3 (ENSSVLG00005008037)	ENSSVLG00005008059	KCNMB2 (ENSSVLG00005008096)	ENSSVLG00005008160	TBL1XR1 (ENSSVLG00005008184) ##22	NAALADL2 (ENSSVLG00005008257)	ENSSVLG00005008340	NLGN1 (ENSSVLG00005008366)	SPATA16 (ENSSVLG00005008419)	ECT2 (ENSSVLG00005008532)	NCEH1 (ENSSVLG00005008940)	ENSSVLG00005009000	TNFSF10 (ENSSVLG00005009030)	ENSSVLG00005009074	GHSR (ENSSVLG00005009108)	FNDC3B (ENSSVLG00005009155)	TMEM212 (ENSSVLG00005009205)	PLD1 (ENSSVLG00005009258)	ENSSVLG00005009308	ENSSVLG00005009676
Laurasiatheria	ANCESTRAL SPECIES	2	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00910000147128	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00860000135711	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT01010000223088	ENSGT00950000183196.B	ENSGT00940000163015	ENSGT00940000155708
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000153421.a.b ##22
Common shrew	MODERN SPECIES	5594																TBL1XR1 (ENSSARG00000006845) ##22
Hedgehog	MODERN SPECIES	7149																TBL1XR1 (ENSEEUG00000003084) ##22
Laurasiatheria_a	ANCESTRAL SPECIES	3	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00910000147128	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00860000135711	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT01010000223088	ENSGT00950000183196.B	ENSGT00940000163015	ENSGT00940000155708
Artiodactyla	ANCESTRAL SPECIES	2	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00910000147128	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00860000135711	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509
Suina	ANCESTRAL SPECIES	1	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00910000147128	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509	ENSGT00940000155893.b
Chacoan peccary	MODERN SPECIES	944	PEX5L (ENSCWAG00000014594)	ENSCWAG00000014493	USP13 (ENSCWAG00000014441)	ENSCWAG00000014364	ENSCWAG00000014342	MRPL47 (ENSCWAG00000014208)	ACTL6A (ENSCWAG00000014148)	GNB4 (ENSCWAG00000014110)	MFN1 (ENSCWAG00000014074)	ZNF639 (ENSCWAG00000014049)	KCNMB3 (ENSCWAG00000013862)	PIK3CA (ENSCWAG00000013715)	ZMAT3 (ENSCWAG00000013667)	KCNMB2 (ENSCWAG00000013602)	ENSCWAG00000013558	TBL1XR1 (ENSCWAG00000013528) ##22	NAALADL2 (ENSCWAG00000013390)	NLGN1 (ENSCWAG00000013308)	SPATA16 (ENSCWAG00000013214)	ECT2 (ENSCWAG00000012868)	NCEH1 (ENSCWAG00000012786)	TNFSF10 (ENSCWAG00000012722)	GHSR (ENSCWAG00000012668)	ENSCWAG00000012660	FNDC3B (ENSCWAG00000012530)	TMEM212 (ENSCWAG00000012483)	PLD1 (ENSCWAG00000012348)	TNIK (ENSCWAG00000011893)	SLC2A2 (ENSCWAG00000011744)	EIF5A2 (ENSCWAG00000011691)	RPL22L1 (ENSCWAG00000011588)
Pig	MODERN SPECIES	4	PEX5L (ENSSSCG00000011766)	USP13 (ENSSSCG00000011765)	NDUFB5 (ENSSSCG00000011764)	MRPL47 (ENSSSCG00000011763)	ACTL6A (ENSSSCG00000011762)	GNB4 (ENSSSCG00000037583)	MFN1 (ENSSSCG00000039285)	ZNF639 (ENSSSCG00000038443)	ENSSSCG00000031922	KCNMB3 (ENSSSCG00000029240)	PIK3CA (ENSSSCG00000030413)	ZMAT3 (ENSSSCG00000033860)	KCNMB2 (ENSSSCG00000011761)	ENSSSCG00000047877	ENSSSCG00000043076	TBL1XR1 (ENSSSCG00000011760) ##22	NAALADL2 (ENSSSCG00000023871)	ENSSSCG00000044757	ENSSSCG00000011758	ENSSSCG00000062281	NLGN1 (ENSSSCG00000011756)	ENSSSCG00000044967	ENSSSCG00000043958	SPATA16 (ENSSSCG00000038177)	ECT2 (ENSSSCG00000035746)	NCEH1 (ENSSSCG00000011755)	GHSR (ENSSSCG00000020906)	FNDC3B (ENSSSCG00000011752)	TMEM212 (ENSSSCG00000011751)	PLD1 (ENSSSCG00000011750)	TNIK (ENSSSCG00000028905)
Artiodactyla_a	ANCESTRAL SPECIES	8	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00910000147128	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00860000135711	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509
Camelidae	ANCESTRAL SPECIES		ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00910000147128	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509	ENSGT00940000155893.b
Alpaca	MODERN SPECIES	4170																TBL1XR1 (ENSVPAG00000006205) ##22
Arabian camel	MODERN SPECIES		ENSCDRG00005000524	USP13 (ENSCDRG00005000482)	NDUFB5 (ENSCDRG00005000451)	MRPL47 (ENSCDRG00005000428)	ENSCDRG00005000409	ACTL6A (ENSCDRG00005000384)	GNB4 (ENSCDRG00005000360)	MFN1 (ENSCDRG00005000323)	ZNF639 (ENSCDRG00005000309)	ENSCDRG00005000287	ENSCDRG00005000278	PIK3CA (ENSCDRG00005000192)	ZMAT3 (ENSCDRG00005000152)	ENSCDRG00005000141	KCNMB2 (ENSCDRG00005000101)	TBL1XR1 (ENSCDRG00005000072) ##22	ENSCDRG00005000048	NAALADL2 (ENSCDRG00005000032)	ENSCDRG00005000026	NLGN1 (ENSCDRG00005000025)	SPATA16 (ENSCDRG00005000021)	ENSCDRG00005000019	ECT2 (ENSCDRG00005000011)	ENSCDRG00005000009	NCEH1 (ENSCDRG00005000005)	TNFSF10 (ENSCDRG00005011611)	GHSR (ENSCDRG00005011555)	FNDC3B (ENSCDRG00005009638)	ENSCDRG00005009531	TMEM212 (ENSCDRG00005009492)	PLD1 (ENSCDRG00005008849)
Artiodactyla_b	ANCESTRAL SPECIES	6	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00910000147128	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00860000135711	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509
Cetacea	ANCESTRAL SPECIES	10	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00910000147128	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335.a	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000239371	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509
Blue whale	MODERN SPECIES	15	MFN1 (ENSBMSG00010003738)	ZNF639 (ENSBMSG00010003730)	ENSBMSG00010003722	CRYGA (ENSBMSG00010003714)	CRYGB (ENSBMSG00010003704)	ENSBMSG00010003697	CRYGC (ENSBMSG00010003687)	CRYGD (ENSBMSG00010003676)	ENSBMSG00010003667	PLEKHM3 (ENSBMSG00010003654)	ENSBMSG00010003648	FZD5 (ENSBMSG00010003645)	ZMAT3 (ENSBMSG00010003591)	ENSBMSG00010003587	KCNMB2 (ENSBMSG00010003583)	TBL1XR1 (ENSBMSG00010003569) ##22	ENSBMSG00010003561	ENSBMSG00010003556	ENSBMSG00010003550	NAALADL2 (ENSBMSG00010003541)	ENSBMSG00010003532	NLGN1 (ENSBMSG00010003524)	SPATA16 (ENSBMSG00010003514)	ECT2 (ENSBMSG00010003476)	NCEH1 (ENSBMSG00010003456)	TNFSF10 (ENSBMSG00010003448)	GHSR (ENSBMSG00010003443)	FNDC3B (ENSBMSG00010003434)	TMEM212 (ENSBMSG00010003424)	PLD1 (ENSBMSG00010003385)	TNIK (ENSBMSG00010001841)
Odontoceti	ANCESTRAL SPECIES	9	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335.a	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00960000192355	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000239371	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509
Sperm whale	MODERN SPECIES		TTC14 (ENSPCTG00005003714)	ENSPCTG00005003702	ENSPCTG00005003697	PEX5L (ENSPCTG00005002908)	USP13 (ENSPCTG00005002736)	NDUFB5 (ENSPCTG00005002691)	MRPL47 (ENSPCTG00005002655)	ACTL6A (ENSPCTG00005002626)	GNB4 (ENSPCTG00005002602)	MFN1 (ENSPCTG00005002577)	ZNF639 (ENSPCTG00005002565)	PIK3CA (ENSPCTG00005002544)	ZMAT3 (ENSPCTG00005002527)	ENSPCTG00005002512	KCNMB2 (ENSPCTG00005002495)	TBL1XR1 (ENSPCTG00005002457) ##22	ENSPCTG00005002436	ENSPCTG00005002425	NAALADL2 (ENSPCTG00005002399)	NLGN1 (ENSPCTG00005002376)	SPATA16 (ENSPCTG00005002355)	ECT2 (ENSPCTG00005002261)	NCEH1 (ENSPCTG00005002205)	TNFSF10 (ENSPCTG00005002181)	GHSR (ENSPCTG00005002161)	FNDC3B (ENSPCTG00005002082)	TMEM212 (ENSPCTG00005002038)	PLD1 (ENSPCTG00005001936)	TNIK (ENSPCTG00005001786)	SLC2A2 (ENSPCTG00005001701)	EIF5A2 (ENSPCTG00005001682)
Odontoceti_a	ANCESTRAL SPECIES	8	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335.a	ENSGT00500000045333.c.b.b	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00960000192355	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509	ENSGT00940000155893.b
Dolphin	MODERN SPECIES	2114																TBL1XR1 (ENSTTRG00000009306) ##22
Odontoceti_b	ANCESTRAL SPECIES	9	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335.a	ENSGT00500000045333.c.b.b	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00960000192355	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000155893.b	ENSGT00890000139496
Vaquita	MODERN SPECIES	15	PEX5L (ENSPSNG00000000991)	USP13 (ENSPSNG00000000641)	NDUFB5 (ENSPSNG00000000597)	MRPL47 (ENSPSNG00000000528)	ENSPSNG00000000504	ACTL6A (ENSPSNG00000000482)	GNB4 (ENSPSNG00000000439)	MFN1 (ENSPSNG00000000400)	ZNF639 (ENSPSNG00000000337)	ENSPSNG00000000310	PIK3CA (ENSPSNG00000000243)	ENSPSNG00000000193	ZMAT3 (ENSPSNG00000000179)	ENSPSNG00000000161	KCNMB2 (ENSPSNG00000000137)	TBL1XR1 (ENSPSNG00000004528) ##22	ENSPSNG00000004516	ENSPSNG00000004503	ENSPSNG00000004485	NAALADL2 (ENSPSNG00000004440)	ENSPSNG00000004415	NLGN1 (ENSPSNG00000004386)	SPATA16 (ENSPSNG00000004352)	ECT2 (ENSPSNG00000004241)	NCEH1 (ENSPSNG00000004193)	TNFSF10 (ENSPSNG00000004177)	GHSR (ENSPSNG00000004137)	FNDC3B (ENSPSNG00000003283)	TMEM212 (ENSPSNG00000002815)	PLD1 (ENSPSNG00000002783)	TNIK (ENSPSNG00000002658)
Monodontidae	ANCESTRAL SPECIES	23	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT00510000046985.h.a.jd	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335.a	ENSGT00500000045333.c.b.b	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00960000192355	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00390000006503.a.l	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509
Beluga whale	MODERN SPECIES	111	TTC14 (ENSDLEG00000012062)	PEX5L (ENSDLEG00000012327)	USP13 (ENSDLEG00000014351)	ENSDLEG00000014388	MRPL47 (ENSDLEG00000014407)	ACTL6A (ENSDLEG00000014465)	ENSDLEG00000014581	GNB4 (ENSDLEG00000014597)	MFN1 (ENSDLEG00000014635)	ZNF639 (ENSDLEG00000014693)	ENSDLEG00000014709	PIK3CA (ENSDLEG00000014721)	ZMAT3 (ENSDLEG00000014744)	ENSDLEG00000014756	KCNMB2 (ENSDLEG00000014764)	TBL1XR1 (ENSDLEG00000014786) ##22	ENSDLEG00000014801	NAALADL2 (ENSDLEG00000014814)	ENSDLEG00000014835	NLGN1 (ENSDLEG00000014852)	SPATA16 (ENSDLEG00000014859)	ECT2 (ENSDLEG00000014893)	NCEH1 (ENSDLEG00000015030)	TNFSF10 (ENSDLEG00000008145)	GHSR (ENSDLEG00000008159)	FNDC3B (ENSDLEG00000008225)	TMEM212 (ENSDLEG00000008541)	PLD1 (ENSDLEG00000008664)	TNIK (ENSDLEG00000009325)	SLC2A2 (ENSDLEG00000009545)	EIF5A2 (ENSDLEG00000009565)
Narwhal	MODERN SPECIES	297	PEX5L (ENSMMNG00015001374)	USP13 (ENSMMNG00015001699)	ENSMMNG00015001756	MRPL47 (ENSMMNG00015001795)	ACTL6A (ENSMMNG00015001826)	ENSMMNG00015001853	GNB4 (ENSMMNG00015001871)	MFN1 (ENSMMNG00015001899)	ENSMMNG00015001936	ENSMMNG00015001952	PIK3CA (ENSMMNG00015002009)	ZMAT3 (ENSMMNG00015002091)	ENSMMNG00015002111	KCNMB2 (ENSMMNG00015002126)	ENSMMNG00015002145	TBL1XR1 (ENSMMNG00015002265) ##22	ENSMMNG00015002332	NAALADL2 (ENSMMNG00015002350)	ENSMMNG00015002378	NLGN1 (ENSMMNG00015002410)	SPATA16 (ENSMMNG00015002430)	ECT2 (ENSMMNG00015002489)	NCEH1 (ENSMMNG00015002627)	TNFSF10 (ENSMMNG00015002655)	GHSR (ENSMMNG00015002677)	ENSMMNG00015002696	FNDC3B (ENSMMNG00015002705)	TMEM212 (ENSMMNG00015002732)	PLD1 (ENSMMNG00015002765)	TNIK (ENSMMNG00015002861)	ENSMMNG00015002950
Pecora	ANCESTRAL SPECIES	8	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00910000147128	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00860000135711	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509.y.a
Yarkand deer	MODERN SPECIES	10	TTC14 (ENSCHYG00000016786)	ENSCHYG00000016977	PEX5L (ENSCHYG00000017068)	USP13 (ENSCHYG00000018967)	NDUFB5 (ENSCHYG00000019479)	MRPL47 (ENSCHYG00000019750)	ACTL6A (ENSCHYG00000019950)	GNB4 (ENSCHYG00000020053)	MFN1 (ENSCHYG00000020157)	ZNF639 (ENSCHYG00000020480)	ENSCHYG00000020552	PIK3CA (ENSCHYG00000020926)	ZMAT3 (ENSCHYG00000021162)	KCNMB2 (ENSCHYG00000021244)	ENSCHYG00000021293	TBL1XR1 (ENSCHYG00000021350) ##22	ENSCHYG00000021600	ENSCHYG00000021620	NAALADL2 (ENSCHYG00000021681)	NLGN1 (ENSCHYG00000022086)	ENSCHYG00000022159	ENSCHYG00000004463	SPATA16 (ENSCHYG00000004961)	ECT2 (ENSCHYG00000005081)	ENSCHYG00000005713	NCEH1 (ENSCHYG00000005728)	TNFSF10 (ENSCHYG00000005789)	GHSR (ENSCHYG00000005817)	FNDC3B (ENSCHYG00000005907)	TMEM212 (ENSCHYG00000006094)	PLD1 (ENSCHYG00000006194)
Percora_a	ANCESTRAL SPECIES	7	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00910000147128	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00860000135711	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509.y.a
Siberian musk deer	MODERN SPECIES	139	CCDC39 (ENSMMSG00000001595)	TTC14 (ENSMMSG00000001675)	PEX5L (ENSMMSG00000001803)	USP13 (ENSMMSG00000003298)	NDUFB5 (ENSMMSG00000003341)	MRPL47 (ENSMMSG00000003361)	ACTL6A (ENSMMSG00000003389)	GNB4 (ENSMMSG00000003419)	MFN1 (ENSMMSG00000003440)	ZNF639 (ENSMMSG00000003462)	KCNMB3 (ENSMMSG00000003476)	PIK3CA (ENSMMSG00000003505)	ZMAT3 (ENSMMSG00000003531)	ENSMMSG00000003544	KCNMB2 (ENSMMSG00000003557)	TBL1XR1 (ENSMMSG00000003575) ##22	NAALADL2 (ENSMMSG00000003624)	ENSMMSG00000003679	NLGN1 (ENSMMSG00000003692)	ENSMMSG00000003711	ENSMMSG00000003725	SPATA16 (ENSMMSG00000003744)	ECT2 (ENSMMSG00000003783)	NCEH1 (ENSMMSG00000003867)	ENSMMSG00000003878	TNFSF10 (ENSMMSG00000003888)	GHSR (ENSMMSG00000003895)	FNDC3B (ENSMMSG00000003904)	TMEM212 (ENSMMSG00000003921)	PLD1 (ENSMMSG00000003941)	TNIK (ENSMMSG00000004049)
Bovidae	ANCESTRAL SPECIES	9	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00910000147128	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00860000135711	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00960000189143	ENSGT00390000003738.a.b
Bovinae	ANCESTRAL SPECIES	6	ENSGT00950000183189.a.b.a	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00860000135711	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00960000189143	ENSGT00390000003738.a.b
Bos	ANCESTRAL SPECIES	7	ENSGT00950000183189.a.b.a	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931.f	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00860000135711	ENSGT01030000234598.a.b	ENSGT00990000205077	ENSGT01100000263481.n.a.b.a.a.b.b.b.a	ENSGT01100000263481.n.a.a.a.b.a.b.b.b.a.a.a.a	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B
Bos_a	ANCESTRAL SPECIES	5	ENSGT00950000183189.a.b.a	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931.f	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00990000205077	ENSGT01100000263481.n.a.b.a.a.b.b.b.a	ENSGT01100000263481.n.a.a.a.b.a.b.b.b.a.a.a.a	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708
Wild yak	MODERN SPECIES	2181																TBL1XR1 (ENSBMUG00000011698) ##22	ENSBMUG00000011719
Domestic yak	MODERN SPECIES		TTC14 (ENSBGRG00000002327)	ENSBGRG00000002451	USP13 (ENSBGRG00000002861)	NDUFB5 (ENSBGRG00000003013)	MRPL47 (ENSBGRG00000003051)	ACTL6A (ENSBGRG00000003086)	GNB4 (ENSBGRG00000003113)	MFN1 (ENSBGRG00000003142)	ENSBGRG00000003185	ENSBGRG00000003193	ENSBGRG00000003201	PIK3CA (ENSBGRG00000003231)	ZMAT3 (ENSBGRG00000003264)	KCNMB2 (ENSBGRG00000003278)	ENSBGRG00000003290	TBL1XR1 (ENSBGRG00000003307) ##22	NAALADL2 (ENSBGRG00000003389)	ENSBGRG00000003433	ENSBGRG00000003453	NLGN1 (ENSBGRG00000003457)	ENSBGRG00000003486	ENSBGRG00000003487	SPATA16 (ENSBGRG00000003501)	ENSBGRG00000003513	ECT2 (ENSBGRG00000003533)	NCEH1 (ENSBGRG00000003789)	TNFSF10 (ENSBGRG00000003840)	GHSR (ENSBGRG00000003884)	FNDC3B (ENSBGRG00000003929)	ENSBGRG00000004377	TMEM212 (ENSBGRG00000004399)
Bos_b	ANCESTRAL SPECIES	5	ENSGT00950000183189.a.b.a	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931.f	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00860000135711	ENSGT01030000234598.a.b	ENSGT00990000205077	ENSGT01100000263481.n.a.b.a.a.b.b.b.a	ENSGT01100000263481.n.a.a.a.b.a.b.b.b.a.a.a.a	ENSGT00940000155789	ENSGT00940000161884.d	ENSGT00950000183087.A.b.b	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029
Cow	MODERN SPECIES		ACTL6A (ENSBTAG00000002460)	GNB4 (ENSBTAG00000002767)	MFN1 (ENSBTAG00000010485)	ENSBTAG00000050978	ZNF639 (ENSBTAG00000037393)	KCNMB3 (ENSBTAG00000009235)	PIK3CA (ENSBTAG00000009232)	ENSBTAG00000054655	ZMAT3 (ENSBTAG00000012463)	KCNMB2 (ENSBTAG00000011377)	ENSBTAG00000050181	PLCXD1 (ENSBTAG00000035144)	GTPBP6 (ENSBTAG00000054315)	ENSBTAG00000052803	ENSBTAG00000048417	TBL1XR1 (ENSBTAG00000021910) ##22	ENSBTAG00000054926	NAALADL2 (ENSBTAG00000048493)	ENSBTAG00000054712	NLGN1 (ENSBTAG00000031891)	ENSBTAG00000046279	ENSBTAG00000012401	SPATA16 (ENSBTAG00000031802)	ECT2 (ENSBTAG00000023814)	NCEH1 (ENSBTAG00000020073)	TNFSF10 (ENSBTAG00000018994)	GHSR (ENSBTAG00000010874)	FNDC3B (ENSBTAG00000019376)	TMEM212 (ENSBTAG00000006174)	PLD1 (ENSBTAG00000017490)	ENSBTAG00000049814
Hybrid Bos Indicus	MODERN SPECIES		ENSBIXG00005017824	NDUFB5 (ENSBIXG00005017808)	MRPL47 (ENSBIXG00005017737)	ACTL6A (ENSBIXG00005017648)	GNB4 (ENSBIXG00005017563)	MFN1 (ENSBIXG00005007801)	ENSBIXG00005017430	ZNF639 (ENSBIXG00005017422)	KCNMB3 (ENSBIXG00005002817)	PIK3CA (ENSBIXG00005017279)	ENSBIXG00005017249	ZMAT3 (ENSBIXG00005017242)	KCNMB2 (ENSBIXG00005017216)	ENSBIXG00005002798	ENSBIXG00005006866	TBL1XR1 (ENSBIXG00005002780) ##22	NAALADL2 (ENSBIXG00005002757)	ENSBIXG00005016911	ENSBIXG00005016905	ENSBIXG00005007046	NLGN1 (ENSBIXG00005016835)	ENSBIXG00005016780	ENSBIXG00005016763	ENSBIXG00005016731	SPATA16 (ENSBIXG00005016707)	ECT2 (ENSBIXG00005016640)	NCEH1 (ENSBIXG00005016476)	TNFSF10 (ENSBIXG00005016416)	GHSR (ENSBIXG00005016403)	FNDC3B (ENSBIXG00005016325)	TMEM212 (ENSBIXG00005016059)
American bison	MODERN SPECIES	3139																TBL1XR1 (ENSBBBG00000010649) ##22	ENSBBBG00000006929	ENSBBBG00000001866
Caprinae	ANCESTRAL SPECIES	8	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00910000147128	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00940000161884.d	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00960000189143	ENSGT00390000003738.a.b
Goat	MODERN SPECIES		CCDC39 (ENSCHIG00000025334)	TTC14 (ENSCHIG00000013993)	PEX5L (ENSCHIG00000021885)	ENSCHIG00000017176	USP13 (ENSCHIG00000020163)	NDUFB5 (ENSCHIG00000024994)	MRPL47 (ENSCHIG00000013922)	ACTL6A (ENSCHIG00000017016)	GNB4 (ENSCHIG00000011036)	MFN1 (ENSCHIG00000021326)	ZNF639 (ENSCHIG00000025519)	KCNMB3 (ENSCHIG00000021624)	PIK3CA (ENSCHIG00000016154)	ZMAT3 (ENSCHIG00000025074)	KCNMB2 (ENSCHIG00000020065)	TBL1XR1 (ENSCHIG00000010626) ##22	NAALADL2 (ENSCHIG00000018744)	NLGN1 (ENSCHIG00000026919)	ENSCHIG00000009834	SPATA16 (ENSCHIG00000023395)	ENSCHIG00000013430	ECT2 (ENSCHIG00000025581)	NCEH1 (ENSCHIG00000024248)	TNFSF10 (ENSCHIG00000016856)	GHSR (ENSCHIG00000009656)	FNDC3B (ENSCHIG00000023878)	TMEM212 (ENSCHIG00000019090)	PLD1 (ENSCHIG00000010044)	TNIK (ENSCHIG00000017624)	SLC2A2 (ENSCHIG00000008516)	ENSCHIG00000014405
Rambouillet Sheep	MODERN SPECIES		TTC14 (ENSOARG00020006723)	CCDC39 (ENSOARG00020006964)	PEX5L (ENSOARG00020007531)	USP13 (ENSOARG00020008860)	NDUFB5 (ENSOARG00020009071)	MRPL47 (ENSOARG00020009272)	ACTL6A (ENSOARG00020009394)	GNB4 (ENSOARG00020009587)	MFN1 (ENSOARG00020009679)	ZNF639 (ENSOARG00020009893)	ENSOARG00020009952	PIK3CA (ENSOARG00020010030)	ZMAT3 (ENSOARG00020000075)	KCNMB2 (ENSOARG00020000078)	ENSOARG00020000133	TBL1XR1 (ENSOARG00020000203) ##22	ENSOARG00020000331	NAALADL2 (ENSOARG00020000356)	NLGN1 (ENSOARG00020000438)	ENSOARG00020000457	SPATA16 (ENSOARG00020000484)	ECT2 (ENSOARG00020000567)	NCEH1 (ENSOARG00020000787)	FNDC3B (ENSOARG00020000887)	TNFSF10 (ENSOARG00020001008)	GHSR (ENSOARG00020001032)	TMEM212 (ENSOARG00020001050)	PLD1 (ENSOARG00020001072)	TNIK (ENSOARG00020001197)	SLC2A2 (ENSOARG00020001524)	EIF5A2 (ENSOARG00020001566)
Laurasiatheria_b	ANCESTRAL SPECIES	2	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00910000147128	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00860000135711	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT01010000223088	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b
Carnivora	ANCESTRAL SPECIES	10	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00910000147128	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000005534.b.b.d	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT01010000223088	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b
Felidae	ANCESTRAL SPECIES	9	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00910000147128	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000005534.b.b.d	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509
Panthera	ANCESTRAL SPECIES	12	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00910000147128	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00860000135711	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000005534.b.b.d	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b
Tiger	MODERN SPECIES	258																TBL1XR1 (ENSPTIG00000020477) ##22	ENSPTIG00000000036	ENSPTIG00000000073	ENSPTIG00000000891	NAALADL2 (ENSPTIG00000001644)
Panthera_a	ANCESTRAL SPECIES	17	ENSGT00390000013701	ENSGT00940000155931	ENSGT00910000147128	ENSGT00940000157401	ENSGT00390000009980	ENSGT00950000182802.B.a.a.a.b.a.b	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00860000135711	ENSGT01030000234598.a.b	ENSGT00940000158200	ENSGT00940000155789	ENSGT00390000005534.b.b.d	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708
leopard	MODERN SPECIES	41	PEX5L (ENSPPRG00000012577)	ENSPPRG00000022239	USP13 (ENSPPRG00000023982)	NDUFB5 (ENSPPRG00000023717)	ENSPPRG00000022339	MRPL47 (ENSPPRG00000000050)	ACTL6A (ENSPPRG00000000310)	ENSPPRG00000022425	GNB4 (ENSPPRG00000001295)	MFN1 (ENSPPRG00000001517)	ZNF639 (ENSPPRG00000002569)	KCNMB3 (ENSPPRG00000003525)	PIK3CA (ENSPPRG00000003667)	ZMAT3 (ENSPPRG00000004407)	KCNMB2 (ENSPPRG00000005379)	TBL1XR1 (ENSPPRG00000007211) ##22	ENSPPRG00000014311	ENSPPRG00000008283	ENSPPRG00000008440	NAALADL2 (ENSPPRG00000008765)	ENSPPRG00000009449	NLGN1 (ENSPPRG00000009803)	ENSPPRG00000010020	SPATA16 (ENSPPRG00000010517)	ENSPPRG00000011572	ECT2 (ENSPPRG00000014700)	NCEH1 (ENSPPRG00000015653)	TNFSF10 (ENSPPRG00000016479)	GHSR (ENSPPRG00000017062)	FNDC3B (ENSPPRG00000024055)	TMEM212 (ENSPPRG00000023938)
lion	MODERN SPECIES	9	TTC14 (ENSPLOG00000016608)	PEX5L (ENSPLOG00000015604)	USP13 (ENSPLOG00000015359)	NDUFB5 (ENSPLOG00000015246)	ENSPLOG00000015221	MRPL47 (ENSPLOG00000015006)	ACTL6A (ENSPLOG00000014922)	GNB4 (ENSPLOG00000014871)	MFN1 (ENSPLOG00000014785)	ZNF639 (ENSPLOG00000014743)	KCNMB3 (ENSPLOG00000014563)	PIK3CA (ENSPLOG00000014416)	ZMAT3 (ENSPLOG00000014350)	KCNMB2 (ENSPLOG00000014199)	ENSPLOG00000014169	TBL1XR1 (ENSPLOG00000014076) ##22	ENSPLOG00000014025	NAALADL2 (ENSPLOG00000013868)	ENSPLOG00000013820	NLGN1 (ENSPLOG00000013747)	SPATA16 (ENSPLOG00000013657)	ECT2 (ENSPLOG00000013475)	NCEH1 (ENSPLOG00000013340)	TNFSF10 (ENSPLOG00000013296)	GHSR (ENSPLOG00000013263)	FNDC3B (ENSPLOG00000013235)	TMEM212 (ENSPLOG00000013184)	PLD1 (ENSPLOG00000013081)	TNIK (ENSPLOG00000012878)	SLC2A2 (ENSPLOG00000012729)	EIF5A2 (ENSPLOG00000012678)
Cat	MODERN SPECIES	240	CCDC39 (ENSFCAG00000029319)	TTC14 (ENSFCAG00000027763)	PEX5L (ENSFCAG00000012367)	USP13 (ENSFCAG00000025086)	NDUFB5 (ENSFCAG00000012365)	MRPL47 (ENSFCAG00000039093)	ACTL6A (ENSFCAG00000012364)	GNB4 (ENSFCAG00000039564)	MFN1 (ENSFCAG00000028181)	ZNF639 (ENSFCAG00000012004)	KCNMB3 (ENSFCAG00000041547)	PIK3CA (ENSFCAG00000018737)	ZMAT3 (ENSFCAG00000014578)	KCNMB2 (ENSFCAG00000006044)	ENSFCAG00000041738	TBL1XR1 (ENSFCAG00000002457) ##22	NAALADL2 (ENSFCAG00000041177)	ENSFCAG00000038414	NLGN1 (ENSFCAG00000008779)	SPATA16 (ENSFCAG00000010284)	ECT2 (ENSFCAG00000018600)	NCEH1 (ENSFCAG00000028457)	TNFSF10 (ENSFCAG00000045697)	GHSR (ENSFCAG00000011266)	FNDC3B (ENSFCAG00000000762)	TMEM212 (ENSFCAG00000011654)	PLD1 (ENSFCAG00000007116)	TNIK (ENSFCAG00000011217)	SLC2A2 (ENSFCAG00000011216)	EIF5A2 (ENSFCAG00000008098)	RPL22L1 (ENSFCAG00000046255)
Caniformia	ANCESTRAL SPECIES		ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00960000193213	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000005534.b.b.d	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT01010000223088	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b
Canidae	ANCESTRAL SPECIES	43														ENSGT01030000235502	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00860000135711	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000163015	ENSGT00980000198999	ENSGT00940000155708
Canis_lupus	ANCESTRAL SPECIES	41														ENSGT01030000235502	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000163015	ENSGT00980000198999	ENSGT00940000155708	ENSGT00390000003738.a.b
Dog	MODERN SPECIES	27													ENSCAFG00845015597	ENSCAFG00845015561	KCNMB2 (ENSCAFG00845015513)	TBL1XR1 (ENSCAFG00845015474) ##22	ENSCAFG00845015434	NAALADL2 (ENSCAFG00845015266)	NLGN1 (ENSCAFG00845015115)	SPATA16 (ENSCAFG00845014909)	ECT2 (ENSCAFG00845025956)	NCEH1 (ENSCAFG00845025863)	TNFSF10 (ENSCAFG00845025786)	GHSR (ENSCAFG00845025708)	FNDC3B (ENSCAFG00845025535)	TMEM212 (ENSCAFG00845025495)	PLD1 (ENSCAFG00845024801)	TNIK (ENSCAFG00845023590)	ENSCAFG00845023386	SLC2A2 (ENSCAFG00845023320)	EIF5A2 (ENSCAFG00845023206)
Dingo	MODERN SPECIES	317														ENSCAFG00020004855	KCNMB2 (ENSCAFG00020004843)	TBL1XR1 (ENSCAFG00020004830) ##22	ENSCAFG00020004812	NAALADL2 (ENSCAFG00020004751)	NLGN1 (ENSCAFG00020004713)	SPATA16 (ENSCAFG00020004681)	ECT2 (ENSCAFG00020004635)	ENSCAFG00020004622	TNFSF10 (ENSCAFG00020004618)	GHSR (ENSCAFG00020004605)	FNDC3B (ENSCAFG00020004443)	TMEM212 (ENSCAFG00020004412)	PLD1 (ENSCAFG00020004212)	ENSCAFG00020004120	ENSCAFG00020003970	ENSCAFG00020003964	SLC2A2 (ENSCAFG00020003949)
Red fox	MODERN SPECIES	229														ENSVVUG00000000980	KCNMB2 (ENSVVUG00000001008)	TBL1XR1 (ENSVVUG00000001067) ##22	ENSVVUG00000001157	ENSVVUG00000001167
Caniformia_b	ANCESTRAL SPECIES		ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00960000193213	ENSGT00940000157401	ENSGT00390000009980.z	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000005534.b.b.d	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT01010000223088	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b
Ursidae	ANCESTRAL SPECIES	1	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980.z	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00950000185097.a	ENSGT00940000153421.a.b ##22	ENSGT00860000135711	ENSGT00940000154268.e.a.jb.b	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000005534.b.b.d	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT01010000223088	ENSGT00950000183196.B
Ursus	ANCESTRAL SPECIES	22	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980.z	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00950000185097.a	ENSGT00940000153421.a.b ##22	ENSGT00860000135711	ENSGT00940000154268.e.a.jb.b	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000005534.b.b.d	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT01010000223088	ENSGT00950000183196.B
Polar bear	MODERN SPECIES	270	ENSUMAG00000007101	ENSUMAG00000007106	PEX5L (ENSUMAG00000007206)	USP13 (ENSUMAG00000007534)	NDUFB5 (ENSUMAG00000007550)	MRPL47 (ENSUMAG00000007554)	ACTL6A (ENSUMAG00000007556)	GNB4 (ENSUMAG00000007558)	MFN1 (ENSUMAG00000007570)	ZNF639 (ENSUMAG00000007588)	KCNMB3 (ENSUMAG00000007593)	PIK3CA (ENSUMAG00000007616)	ZMAT3 (ENSUMAG00000007847)	KCNMB2 (ENSUMAG00000007875)	ENSUMAG00000007876	TBL1XR1 (ENSUMAG00000007886) ##22	ENSUMAG00000007898	ENSUMAG00000007910	NAALADL2 (ENSUMAG00000007923)	NLGN1 (ENSUMAG00000007957)	ENSUMAG00000007969	SPATA16 (ENSUMAG00000008006)	ENSUMAG00000008026	ENSUMAG00000008030	NCEH1 (ENSUMAG00000008062)	TNFSF10 (ENSUMAG00000008069)	GHSR (ENSUMAG00000008081)	FNDC3B (ENSUMAG00000008283)	TMEM212 (ENSUMAG00000009254)	PLD1 (ENSUMAG00000009364)	ENSUMAG00000010372
American black bear	MODERN SPECIES	2533																TBL1XR1 (ENSUAMG00000015061) ##22
Giant Panda	MODERN SPECIES		CCDC39 (ENSAMEG00000011032)	TTC14 (ENSAMEG00000011013)	PEX5L (ENSAMEG00000010981)	USP13 (ENSAMEG00000010896)	NDUFB5 (ENSAMEG00000023963)	MRPL47 (ENSAMEG00000010876)	ACTL6A (ENSAMEG00000010856)	GNB4 (ENSAMEG00000010842)	MFN1 (ENSAMEG00000010816)	ZNF639 (ENSAMEG00000010809)	KCNMB3 (ENSAMEG00000010807)	PIK3CA (ENSAMEG00000010753)	ZMAT3 (ENSAMEG00000010742)	KCNMB2 (ENSAMEG00000010737)	ENSAMEG00000028254	TBL1XR1 (ENSAMEG00000010711) ##22	ENSAMEG00000031369	ENSAMEG00000029929	NAALADL2 (ENSAMEG00000010705)	NLGN1 (ENSAMEG00000001461)	SPATA16 (ENSAMEG00000001100)	ECT2 (ENSAMEG00000001035)	NCEH1 (ENSAMEG00000026170)	TNFSF10 (ENSAMEG00000000999)	GHSR (ENSAMEG00000000992)	FNDC3B (ENSAMEG00000000947)	TMEM212 (ENSAMEG00000000944)	PLD1 (ENSAMEG00000000864)	TNIK (ENSAMEG00000004798)	SLC2A2 (ENSAMEG00000004758)	EIF5A2 (ENSAMEG00000025642)
Mustelinae	ANCESTRAL SPECIES	20	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00960000193213	ENSGT00940000157401	ENSGT00390000009980.z	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509	ENSGT00940000155893.b
American mink	MODERN SPECIES	187														KCNMB2 (ENSNVIG00000022792)	ENSNVIG00000022790	TBL1R (ENSNVIG00000022787) ##22	ENSNVIG00000022786	NAALADL2 (ENSNVIG00000022781)
Ferret	MODERN SPECIES	216				PEX5L (ENSMPUG00000017218)	USP13 (ENSMPUG00000017217)	NDUFB5 (ENSMPUG00000017216)	MRPL47 (ENSMPUG00000017214)	ACTL6A (ENSMPUG00000017212)	GNB4 (ENSMPUG00000017211)	MFN1 (ENSMPUG00000017210)	ZNF639 (ENSMPUG00000017209)	KCNMB3 (ENSMPUG00000017208)	PIK3CA (ENSMPUG00000017207)	ZMAT3 (ENSMPUG00000017206)	KCNMB2 (ENSMPUG00000017205)	TBL1XR1 (ENSMPUG00000017202) ##22	ENSMPUG00000017200	NAALADL2 (ENSMPUG00000017199)	ENSMPUG00000017193	ENSMPUG00000018916	ENSMPUG00000017180	ENSMPUG00000017179	SPATA16 (ENSMPUG00000017177)	ECT2 (ENSMPUG00000017173)	NCEH1 (ENSMPUG00000017172)	TNFSF10 (ENSMPUG00000017166)	GHSR (ENSMPUG00000017162)	FNDC3B (ENSMPUG00000017158)	TMEM212 (ENSMPUG00000017156)	PLD1 (ENSMPUG00000017152)	ENSMPUG00000017151
Laurasiatheria_c	ANCESTRAL SPECIES	2	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00910000147128	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00860000135711	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509
Chiroptera	ANCESTRAL SPECIES	13	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00910000147128	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00860000135711	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509
Microchiroptera	ANCESTRAL SPECIES	11	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00910000147128	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00860000135711	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509
Greater horseshoe bat	MODERN SPECIES	11	TTC14 (ENSRFEG00010021404)	PEX5L (ENSRFEG00010021467)	ENSRFEG00010021630	USP13 (ENSRFEG00010021639)	ENSRFEG00010021670	MRPL47 (ENSRFEG00010021687)	ACTL6A (ENSRFEG00010021704)	GNB4 (ENSRFEG00010021722)	MFN1 (ENSRFEG00010021730)	ZNF639 (ENSRFEG00010021744)	ENSRFEG00010021748	PIK3CA (ENSRFEG00010021761)	ENSRFEG00010000122	ZMAT3 (ENSRFEG00010000131)	KCNMB2 (ENSRFEG00010000136)	TBL1XR1 (ENSRFEG00010000145) ##22	ENSRFEG00010000156	NAALADL2 (ENSRFEG00010000176)	ENSRFEG00010000186	NLGN1 (ENSRFEG00010000199)	ENSRFEG00010000208	SPATA16 (ENSRFEG00010000235)	ENSRFEG00010000278	NCEH1 (ENSRFEG00010000317)	TNFSF10 (ENSRFEG00010000343)	GHSR (ENSRFEG00010000370)	FNDC3B (ENSRFEG00010000387)	TMEM212 (ENSRFEG00010000449)	PLD1 (ENSRFEG00010000516)	TNIK (ENSRFEG00010000693)	SLC2A2 (ENSRFEG00010001037)
Microbat	MODERN SPECIES	1107															ENSMLUG00000025150	TBL1XR1 (ENSMLUG00000007144) ##22	ENSMLUG00000026004
Megabat	MODERN SPECIES	7377																TBL1XR1 (ENSPVAG00000003704) ##22
Equus	ANCESTRAL SPECIES	19	ENSGT00950000183189.a.b.a	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00860000135711	ENSGT00990000205077	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT00390000012420.j	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708
Donkey	MODERN SPECIES	25	FXR1 (ENSEASG00005016818)	CCDC39 (ENSEASG00005016830)	TTC14 (ENSEASG00005016838)	PEX5L (ENSEASG00005016845)	USP13 (ENSEASG00005016850)	NDUFB5 (ENSEASG00005016854)	MRPL47 (ENSEASG00005016858)	ACTL6A (ENSEASG00005016862)	GNB4 (ENSEASG00005016867)	MFN1 (ENSEASG00005016871)	ZNF639 (ENSEASG00005016879)	ENSEASG00005016880	PIK3CA (ENSEASG00005016884)	ZMAT3 (ENSEASG00005016887)	KCNMB2 (ENSEASG00005016891)	TBL1XR1 (ENSEASG00005016897) ##22	ENSEASG00005036049	ENSEASG00005016908	NAALADL2 (ENSEASG00005016907)	NLGN1 (ENSEASG00005033409)	SPATA16 (ENSEASG00005016917)	ECT2 (ENSEASG00005016949)	NCEH1 (ENSEASG00005017188)	ENSEASG00005038780	ENSEASG00005024553	TNFSF10 (ENSEASG00005032698)	GHSR (ENSEASG00005026008)	FNDC3B (ENSEASG00005017198)	TMEM212 (ENSEASG00005017199)	PLD1 (ENSEASG00005017200)	TNIK (ENSEASG00005017205)
Horse	MODERN SPECIES	10	CCDC39 (ENSECAG00000021390)	TTC14 (ENSECAG00000014616)	ENSECAG00000057496	PEX5L (ENSECAG00000006506)	USP13 (ENSECAG00000004152)	NDUFB5 (ENSECAG00000000682)	MRPL47 (ENSECAG00000018545)	ACTL6A (ENSECAG00000013622)	GNB4 (ENSECAG00000008196)	MFN1 (ENSECAG00000018551)	ZNF639 (ENSECAG00000015691)	KCNMB3 (ENSECAG00000014580)	PIK3CA (ENSECAG00000015019)	ZMAT3 (ENSECAG00000012784)	KCNMB2 (ENSECAG00000009088)	TBL1XR1 (ENSECAG00000008249) ##22	ENSECAG00000049616	ENSECAG00000048291	ENSECAG00000049777	ENSECAG00000053463	ENSECAG00000052492	ENSECAG00000045243	NAALADL2 (ENSECAG00000016282)	NLGN1 (ENSECAG00000012940)	SPATA16 (ENSECAG00000012480)	ECT2 (ENSECAG00000014059)	NCEH1 (ENSECAG00000010106)	ENSECAG00000008286	TNFSF10 (ENSECAG00000019391)	GHSR (ENSECAG00000017722)	FNDC3B (ENSECAG00000019423)
Marsupialia	ANCESTRAL SPECIES	8	ENSGT00950000183189.a.b.a	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00950000182965.a.b.b.a.a.a.a.a.a	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509
Opossum	DUPLICATION
Opossum	MODERN SPECIES	6	CCDC39 (ENSMODG00000021295)	TTC14 (ENSMODG00000021296)	PEX5L (ENSMODG00000021298)	ENSMODG00000029313	USP13 (ENSMODG00000021299)	NDUFB5 (ENSMODG00000021300)	ENSMODG00000041416	ACTL6A (ENSMODG00000021302)	GNB4 (ENSMODG00000021303)	MFN1 (ENSMODG00000021304)	ZNF639 (ENSMODG00000021306)	KCNMB3 (ENSMODG00000021307)	PIK3CA (ENSMODG00000021305)	ZMAT3 (ENSMODG00000021308)	KCNMB2 (ENSMODG00000021309)	TBL1XR1 (ENSMODG00000021312) ##22	ENSMODG00000027370	ENSMODG00000021313	ENSMODG00000051427	ENSMODG00000024795	NAALADL2 (ENSMODG00000021314)	NLGN1 (ENSMODG00000021315)	SPATA16 (ENSMODG00000021318)	ECT2 (ENSMODG00000021319)	NCEH1 (ENSMODG00000051563)	TNFSF10 (ENSMODG00000041585)	GHSR (ENSMODG00000021322)	FNDC3B (ENSMODG00000021323)	ALS2 (ENSMODG00000016329)	CDK15 (ENSMODG00000016326)	FZD7 (ENSMODG00000016310)
Opossum	MODERN SPECIES	340																ENSMODG00000022806 ##22	ENSMODG00000045534	ENSMODG00000038585
Marsupialia_b	ANCESTRAL SPECIES	7	ENSGT00950000183189.a.b.a	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980.j	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00950000182965.a.b.b.a.a.a.a.a.a	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509
Diprotodontia	ANCESTRAL SPECIES	17	ENSGT00950000183189.a.b.a	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980.j	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00950000182965.a.b.b.a.a.a.a.a.b	ENSGT00950000182965.a.b.b.a.a.a.a.a.a	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b
Diprotodontia_a	ANCESTRAL SPECIES	19	ENSGT00950000183189.a.b.a	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980.j	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT00950000182965.a.b.b.a.a.a.a.a.b	ENSGT00950000182965.a.b.b.a.a.a.a.a.a	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000158429.d	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708
Common wonbat	MODERN SPECIES	1046	FXR1 (ENSVURG00010011990)	CCDC39 (ENSVURG00010012026)	ENSVURG00010012039	ENSVURG00010012046	PEX5L (ENSVURG00010012070)	USP13 (ENSVURG00010012461)	NDUFB5 (ENSVURG00010012488)	MRPL47 (ENSVURG00010012499)	ACTL6A (ENSVURG00010012511)	GNB4 (ENSVURG00010012529)	MFN1 (ENSVURG00010012549)	ZNF639 (ENSVURG00010012565)	KCNMB3 (ENSVURG00010012570)	PIK3CA (ENSVURG00010012578)	KCNMB2 (ENSVURG00010012605)	TBL1XR1 (ENSVURG00010012629) ##22	ENSVURG00010012660	NAALADL2 (ENSVURG00010012681)	NLGN1 (ENSVURG00010012715)	SPATA16 (ENSVURG00010012732)	ECT2 (ENSVURG00010012760)	ENSVURG00010012795	TNFSF10 (ENSVURG00010012804)	GHSR (ENSVURG00010012811)	FNDC3B (ENSVURG00010012819)	TMEM212 (ENSVURG00010012848)	ENSVURG00010012856	PLD1 (ENSVURG00010012863)	TNIK (ENSVURG00010012914)	SLC2A2 (ENSVURG00010013085)	EIF5A2 (ENSVURG00010013099)
koala	MODERN SPECIES	9	CCDC39 (ENSPCIG00000034234)	TTC14 (ENSPCIG00000019438)	PEX5L (ENSPCIG00000024006)	USP13 (ENSPCIG00000023996)	ENSPCIG00000032372	ENSPCIG00000006780	ACTL6A (ENSPCIG00000006777)	GNB4 (ENSPCIG00000006774)	MFN1 (ENSPCIG00000006771)	ZNF639 (ENSPCIG00000010395)	KCNMB3 (ENSPCIG00000010392)	PIK3CA (ENSPCIG00000006767)	ENSPCIG00000006763	ZMAT3 (ENSPCIG00000034195)	KCNMB2 (ENSPCIG00000006759)	TBL1XR1 (ENSPCIG00000028583) ##22	ENSPCIG00000030517	ENSPCIG00000010041	NAALADL2 (ENSPCIG00000036959)	NLGN1 (ENSPCIG00000023665)	ENSPCIG00000035061	SPATA16 (ENSPCIG00000010299)	ECT2 (ENSPCIG00000010310)	NCEH1 (ENSPCIG00000010313)	TNFSF10 (ENSPCIG00000010315)	GHSR (ENSPCIG00000010316)	FNDC3B (ENSPCIG00000010317)	TMEM212 (ENSPCIG00000005387)	ENSPCIG00000033713	PLD1 (ENSPCIG00000005485)	TNIK (ENSPCIG00000005702)
Wallaby	DUPLICATION
Wallaby	MODERN SPECIES	222																ENSMEUG00000014841 ##22
Wallaby	MODERN SPECIES	8540																ENSMEUG00000007721 ##22
Tasmanian devil	MODERN SPECIES	2	FXR1 (ENSSHAG00000018625)	CCDC39 (ENSSHAG00000018433)	TTC14 (ENSSHAG00000018408)	PEX5L (ENSSHAG00000017604)	USP13 (ENSSHAG00000017431)	NDUFB5 (ENSSHAG00000021190)	MRPL47 (ENSSHAG00000017273)	ACTL6A (ENSSHAG00000017237)	GNB4 (ENSSHAG00000016950)	MFN1 (ENSSHAG00000016834)	ZNF639 (ENSSHAG00000016769)	KCNMB3 (ENSSHAG00000016520)	PIK3CA (ENSSHAG00000016406)	ZMAT3 (ENSSHAG00000016154)	KCNMB2 (ENSSHAG00000027317)	TBL1XR1 (ENSSHAG00000005700) ##22	ENSSHAG00000022530	NAALADL2 (ENSSHAG00000018074)	NLGN1 (ENSSHAG00000016978)	SPATA16 (ENSSHAG00000010931)	ECT2 (ENSSHAG00000010171)	NCEH1 (ENSSHAG00000025000)	ENSSHAG00000031725	GHSR (ENSSHAG00000023938)	FNDC3B (ENSSHAG00000006632)	TMEM212 (ENSSHAG00000024508)	PLD1 (ENSSHAG00000007384)	TNIK (ENSSHAG00000011118)	SLC2A2 (ENSSHAG00000012226)	EIF5A2 (ENSSHAG00000027904)	RPL22L1 (ENSSHAG00000012876)
Platypus	MODERN SPECIES		CCDC39 (ENSOANG00000020027)	TTC14 (ENSOANG00000003676)	PEX5L (ENSOANG00000041655)	USP13 (ENSOANG00000050467)	ENSOANG00000021730	MRPL47 (ENSOANG00000002137)	ACTL6A (ENSOANG00000044256)	GNB4 (ENSOANG00000004695)	MFN1 (ENSOANG00000004694)	ZNF639 (ENSOANG00000012679)	KCNMB3 (ENSOANG00000013923)	PIK3CA (ENSOANG00000013922)	ZMAT3 (ENSOANG00000009901)	KCNMB2 (ENSOANG00000040015)	ENSOANG00000001673	TBL1XR1 (ENSOANG00000009492) ##22	ENSOANG00000049897	NAALADL2 (ENSOANG00000049145)	NLGN1 (ENSOANG00000050589)	SPATA16 (ENSOANG00000022205)	ECT2 (ENSOANG00000013671)	NCEH1 (ENSOANG00000039720)	TNFSF10 (ENSOANG00000009315)	GHSR (ENSOANG00000045758)	FNDC3B (ENSOANG00000001087)	TMEM212 (ENSOANG00000050579)	PLD1 (ENSOANG00000037105)	TNIK (ENSOANG00000012684)	SLC2A2 (ENSOANG00000001520)	EIF5A2 (ENSOANG00000047260)	RPL22L1 (ENSOANG00000003938)
Sauria	ANCESTRAL SPECIES	9	ENSGT00390000015010	ENSGT00960000190572	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT01030000235369	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000163015	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509
Archelosauria	ANCESTRAL SPECIES	11	ENSGT00390000015010	ENSGT00960000190572	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT01030000235369.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000163015	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509
Archosauria	ANCESTRAL SPECIES	10	ENSGT00950000183189.a.b.a	ENSGT00390000015010	ENSGT00960000190572	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000163015	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509
Aves	ANCESTRAL SPECIES	13	ENSGT00940000154384	ENSGT00950000183189.a.b.a	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000163015	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509
Neognathae	ANCESTRAL SPECIES	9	ENSGT00940000154384	ENSGT00950000183189.a.b.a	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000163015	ENSGT00960000189666	ENSGT00940000155708	ENSGT00390000003738.a.b
Neognathae_b	ANCESTRAL SPECIES	11	ENSGT00940000154384	ENSGT00950000183189.a.b.a	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00960000189666	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509	ENSGT00940000155893.b
Passeriformes	ANCESTRAL SPECIES	9	ENSGT00940000154384	ENSGT00950000183189.a.b.a	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT01010000228465	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00960000189666	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509	ENSGT00940000155893.b
Passeriformes_d	ANCESTRAL SPECIES	10	ENSGT00940000154384	ENSGT00950000183189.a.b.a	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT01010000228465	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00960000189666	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509	ENSGT00940000155893.b
Passeriformes_g	ANCESTRAL SPECIES	11	ENSGT00940000154384	ENSGT00950000183189.a.b.a	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT01010000228465	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00960000189666	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509	ENSGT00940000155893.b
Passeroidea	ANCESTRAL SPECIES	13	ENSGT00940000154384	ENSGT00950000183189.a.b.a	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT01010000228465	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00960000189666	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509	ENSGT00940000155893.b
Common canary	MODERN SPECIES	10	DNAJC19 (ENSSCAG00000012624)	FXR1 (ENSSCAG00000012440)	CCDC39 (ENSSCAG00000012392)	TTC14 (ENSSCAG00000012380)	PEX5L (ENSSCAG00000012363)	USP13 (ENSSCAG00000012352)	NDUFB5 (ENSSCAG00000012346)	MRPL47 (ENSSCAG00000012343)	ACTL6A (ENSSCAG00000012338)	GNB4 (ENSSCAG00000012330)	MFN1 (ENSSCAG00000012323)	ZNF639 (ENSSCAG00000012318)	PIK3CA (ENSSCAG00000012311)	ZMAT3 (ENSSCAG00000012302)	KCNMB2 (ENSSCAG00000012297)	TBL1XR1 (ENSSCAG00000012275) ##22	NAALADL2 (ENSSCAG00000012244)	NLGN1 (ENSSCAG00000012186)	ECT2 (ENSSCAG00000012156)	NCEH1 (ENSSCAG00000012047)	TNFSF10 (ENSSCAG00000012032)	GHSR (ENSSCAG00000012030)	FNDC3B (ENSSCAG00000012019)	PLD1 (ENSSCAG00000012001)	TNIK (ENSSCAG00000010287)	SLC2A2 (ENSSCAG00000010050)	EIF5A2 (ENSSCAG00000010045)	RPL22L1 (ENSSCAG00000010041)	SLC7A14 (ENSSCAG00000010035)	CLDN11 (ENSSCAG00000010031)	SKIL (ENSSCAG00000010028)
Zebra finch	MODERN SPECIES	31	DNAJC19 (ENSTGUG00000010557)	FXR1 (ENSTGUG00000010560)	CCDC39 (ENSTGUG00000010586)	TTC14 (ENSTGUG00000010592)	PEX5L (ENSTGUG00000010602)	USP13 (ENSTGUG00000010622)	NDUFB5 (ENSTGUG00000010639)	MRPL47 (ENSTGUG00000010649)	ACTL6A (ENSTGUG00000010657)	GNB4 (ENSTGUG00000021021)	MFN1 (ENSTGUG00000010693)	ZNF639 (ENSTGUG00000027191)	PIK3CA (ENSTGUG00000010736)	ZMAT3 (ENSTGUG00000027964)	KCNMB2 (ENSTGUG00000026184)	TBL1XR1 (ENSTGUG00000010773) ##22	NAALADL2 (ENSTGUG00000010781)	NLGN1 (ENSTGUG00000021670)	ECT2 (ENSTGUG00000010794)	NCEH1 (ENSTGUG00000025400)	TNFSF10 (ENSTGUG00000010819)	GHSR (ENSTGUG00000010823)	FNDC3B (ENSTGUG00000010824)	ENSTGUG00000018991	PLD1 (ENSTGUG00000010857)	TNIK (ENSTGUG00000010875)	ENSTGUG00000025095	SLC2A2 (ENSTGUG00000010920)	EIF5A2 (ENSTGUG00000028575)	RPL22L1 (ENSTGUG00000010942)	SLC7A14 (ENSTGUG00000010946)
Medium ground finch	MODERN SPECIES	12	DNAJC19 (ENSGFOG00000005157)	FXR1 (ENSGFOG00000005246)	CCDC39 (ENSGFOG00000007337)	ENSGFOG00000007366	PEX5L (ENSGFOG00000007428)	USP13 (ENSGFOG00000007465)	NDUFB5 (ENSGFOG00000007487)	MRPL47 (ENSGFOG00000007503)	ACTL6A (ENSGFOG00000007543)	GNB4 (ENSGFOG00000007624)	MFN1 (ENSGFOG00000007632)	ZNF639 (ENSGFOG00000007659)	PIK3CA (ENSGFOG00000007668)	ZMAT3 (ENSGFOG00000007697)	KCNMB2 (ENSGFOG00000007709)	TBL1XR1 (ENSGFOG00000007746) ##22	NAALADL2 (ENSGFOG00000007762)	NLGN1 (ENSGFOG00000007784)	ECT2 (ENSGFOG00000007813)	NCEH1 (ENSGFOG00000007873)	TNFSF10 (ENSGFOG00000008030)	GHSR (ENSGFOG00000008037)	FNDC3B (ENSGFOG00000008069)	PLD1 (ENSGFOG00000008326)	TNIK (ENSGFOG00000011417)	ENSGFOG00000012152	SLC2A2 (ENSGFOG00000012156)	EIF5A2 (ENSGFOG00000012165)	RPL22L1 (ENSGFOG00000012171)	SLC7A14 (ENSGFOG00000012176)	CLDN11 (ENSGFOG00000012182)
Flycatcher	MODERN SPECIES	28	DNAJC19 (ENSFALG00000008296)	FXR1 (ENSFALG00000008301)	CCDC39 (ENSFALG00000008311)	TTC14 (ENSFALG00000008319)	PEX5L (ENSFALG00000008333)	USP13 (ENSFALG00000008348)	NDUFB5 (ENSFALG00000025849)	MRPL47 (ENSFALG00000008365)	ACTL6A (ENSFALG00000008369)	GNB4 (ENSFALG00000008376)	MFN1 (ENSFALG00000008386)	ZNF639 (ENSFALG00000027836)	PIK3CA (ENSFALG00000008395)	ZMAT3 (ENSFALG00000008403)	KCNMB2 (ENSFALG00000008411)	TBL1XR1 (ENSFALG00000008416) ##22	NAALADL2 (ENSFALG00000008425)	NLGN1 (ENSFALG00000008434)	ECT2 (ENSFALG00000008443)	NCEH1 (ENSFALG00000008448)	TNFSF10 (ENSFALG00000026290)	GHSR (ENSFALG00000008461)	FNDC3B (ENSFALG00000008467)	PLD1 (ENSFALG00000008477)	TNIK (ENSFALG00000008495)	SLC2A2 (ENSFALG00000008548)	EIF5A2 (ENSFALG00000008571)	SLC7A14 (ENSFALG00000008583)	CLDN11 (ENSFALG00000025881)	SKIL (ENSFALG00000008592)	PRKCI (ENSFALG00000008601)
Great tit	MODERN SPECIES	29	DNAJC19 (ENSPMJG00000002207)	FXR1 (ENSPMJG00000002237)	CCDC39 (ENSPMJG00000002417)	TTC14 (ENSPMJG00000002481)	PEX5L (ENSPMJG00000002525)	USP13 (ENSPMJG00000002592)	NDUFB5 (ENSPMJG00000002618)	MRPL47 (ENSPMJG00000002630)	ACTL6A (ENSPMJG00000002638)	GNB4 (ENSPMJG00000002659)	MFN1 (ENSPMJG00000002684)	ZNF639 (ENSPMJG00000002695)	PIK3CA (ENSPMJG00000002701)	ZMAT3 (ENSPMJG00000002709)	KCNMB2 (ENSPMJG00000002756)	TBL1XR1 (ENSPMJG00000002841) ##22	NAALADL2 (ENSPMJG00000002940)	NLGN1 (ENSPMJG00000002987)	ECT2 (ENSPMJG00000003020)	NCEH1 (ENSPMJG00000003040)	TNFSF10 (ENSPMJG00000003047)	GHSR (ENSPMJG00000003056)	FNDC3B (ENSPMJG00000003059)	ENSPMJG00000004658	PLD1 (ENSPMJG00000004681)	TNIK (ENSPMJG00000004723)	SLC2A2 (ENSPMJG00000004751)	EIF5A2 (ENSPMJG00000004754)	RPL22L1 (ENSPMJG00000004755)	SLC7A14 (ENSPMJG00000004785)	CLDN11 (ENSPMJG00000004790)
Neognathae_c	ANCESTRAL SPECIES	13	ENSGT00940000154384	ENSGT00950000183189.a.b.a	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509	ENSGT00940000155893.b	ENSGT00890000139496
Kakapo	MODERN SPECIES	25	DNAJC19 (ENSSHBG00005012189)	FXR1 (ENSSHBG00005012156)	CCDC39 (ENSSHBG00005012103)	TTC14 (ENSSHBG00005012064)	PEX5L (ENSSHBG00005010862)	USP13 (ENSSHBG00005010631)	NDUFB5 (ENSSHBG00005010573)	MRPL47 (ENSSHBG00005010546)	ACTL6A (ENSSHBG00005010515)	GNB4 (ENSSHBG00005010477)	MFN1 (ENSSHBG00005010431)	ZNF639 (ENSSHBG00005000719)	PIK3CA (ENSSHBG00005000694)	ZMAT3 (ENSSHBG00005017878)	KCNMB2 (ENSSHBG00005017869)	TBL1XR1 (ENSSHBG00005017856) ##22	NAALADL2 (ENSSHBG00005017848)	NLGN1 (ENSSHBG00005017842)	SPATA16 (ENSSHBG00005017829)	ENSSHBG00005017821	ENSSHBG00005017809	NCEH1 (ENSSHBG00005017804)	TNFSF10 (ENSSHBG00005017794)	GHSR (ENSSHBG00005017789)	FNDC3B (ENSSHBG00005017778)	PLD1 (ENSSHBG00005016963)	TNIK (ENSSHBG00005016893)	SLC2A2 (ENSSHBG00005016871)	EIF5A2 (ENSSHBG00005016863)	RPL22L1 (ENSSHBG00005016856)	SLC7A14 (ENSSHBG00005016849)
Golden eagle	MODERN SPECIES	1	FXR1 (ENSACCG00020001041)	CCDC39 (ENSACCG00020000987)	TTC14 (ENSACCG00020000953)	PEX5L (ENSACCG00020000831)	USP13 (ENSACCG00020000413)	NDUFB5 (ENSACCG00020000356)	MRPL47 (ENSACCG00020004710)	ACTL6A (ENSACCG00020004677)	GNB4 (ENSACCG00020004669)	MFN1 (ENSACCG00020004658)	ZNF639 (ENSACCG00020004651)	PIK3CA (ENSACCG00020004627)	ZMAT3 (ENSACCG00020004611)	ENSACCG00020004603	KCNMB2 (ENSACCG00020004589)	TBL1XR1 (ENSACCG00020004568) ##22	NAALADL2 (ENSACCG00020004541)	NLGN1 (ENSACCG00020004515)	SPATA16 (ENSACCG00020004502)	ENSACCG00020004492	ENSACCG00020004485	NCEH1 (ENSACCG00020004468)	TNFSF10 (ENSACCG00020004457)	GHSR (ENSACCG00020004449)	FNDC3B (ENSACCG00020004229)	PLD1 (ENSACCG00020003751)	TNIK (ENSACCG00020003590)	SLC2A2 (ENSACCG00020003447)	EIF5A2 (ENSACCG00020003373)	RPL22L1 (ENSACCG00020003347)	SLC7A14 (ENSACCG00020003323)
Galloanserae	ANCESTRAL SPECIES	16	ENSGT00940000154384	ENSGT00950000183189.a.b.a	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000163015	ENSGT00960000189666	ENSGT00940000155708	ENSGT00390000003738.a.b
Anatidae	ANCESTRAL SPECIES	31	ENSGT00940000154384	ENSGT00950000183189.a.b.a	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000163015	ENSGT00960000189666	ENSGT00940000155708	ENSGT00390000003738.a.b
Pink-footed goose	MODERN SPECIES	72			ENSABRG00000022512	TTC14 (ENSABRG00000022518)	PEX5L (ENSABRG00000022519)	USP13 (ENSABRG00000022524)	NDUFB5 (ENSABRG00000022526)	MRPL47 (ENSABRG00000022527)	ACTL6A (ENSABRG00000022528)	GNB4 (ENSABRG00000022531)	MFN1 (ENSABRG00000022532)	ZNF639 (ENSABRG00000022534)	PIK3CA (ENSABRG00000022535)	ZMAT3 (ENSABRG00000022537)	KCNMB2 (ENSABRG00000022545)	TBL1XR1 (ENSABRG00000022555) ##22	NAALADL2 (ENSABRG00000022575)	NLGN1 (ENSABRG00000022582)	SPATA16 (ENSABRG00000000786)	ECT2 (ENSABRG00000001001)	NCEH1 (ENSABRG00000001148)	TNFSF10 (ENSABRG00000001164)	GHSR (ENSABRG00000001233)	FNDC3B (ENSABRG00000001285)	TMEM212 (ENSABRG00000001341)	PLD1 (ENSABRG00000001362)	TNIK (ENSABRG00000002344)	ENSABRG00000010633	SLC2A2 (ENSABRG00000010641)	ENSABRG00000010660	EIF5A2 (ENSABRG00000010662)
Duck	MODERN SPECIES	27	ATP11B (ENSAPLG00000009719)	DNAJC19 (ENSAPLG00000009956)	FXR1 (ENSAPLG00000010032)	CCDC39 (ENSAPLG00000010760)	TTC14 (ENSAPLG00000010921)	PEX5L (ENSAPLG00000011193)	USP13 (ENSAPLG00000011239)	MRPL47 (ENSAPLG00000011793)	ACTL6A (ENSAPLG00000011809)	GNB4 (ENSAPLG00000012235)	MFN1 (ENSAPLG00000012500)	ZNF639 (ENSAPLG00000012914)	PIK3CA (ENSAPLG00000012924)	ZMAT3 (ENSAPLG00000013292)	KCNMB2 (ENSAPLG00000020595)	TBL1XR1 (ENSAPLG00000013445) ##22	NAALADL2 (ENSAPLG00000010077)	NLGN1 (ENSAPLG00000010082)	SPATA16 (ENSAPLG00000010186)	ECT2 (ENSAPLG00000010339)	NCEH1 (ENSAPLG00000011627)	TNFSF10 (ENSAPLG00000022295)	GHSR (ENSAPLG00000012064)	FNDC3B (ENSAPLG00000012065)	ENSAPLG00000027837	PLD1 (ENSAPLG00000012211)	ENSAPLG00000026428	ENSAPLG00000010480	ENSAPLG00000019003	SLC2A2 (ENSAPLG00000010156)	EIF5A2 (ENSAPLG00000025753)
Phasianidae	ANCESTRAL SPECIES	9	ENSGT00940000154384.e	ENSGT00950000183189.a.b.a	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00960000189666	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509	ENSGT00940000155893.b
Phasianidae_b	ANCESTRAL SPECIES	12	ENSGT00940000154384.e	ENSGT00950000183189.a.b.a	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00960000189666	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509	ENSGT00940000155893.b
Turkey	MODERN SPECIES	2	FXR1 (ENSMGAG00000009602)	CCDC39 (ENSMGAG00000009659)	TTC14 (ENSMGAG00000009680)	PEX5L (ENSMGAG00000009710)	USP13 (ENSMGAG00000009725)	MRPL47 (ENSMGAG00000020958)	NDUFB5 (ENSMGAG00000009730)	ACTL6A (ENSMGAG00000009756)	GNB4 (ENSMGAG00000002359)	MFN1 (ENSMGAG00000009801)	ZNF639 (ENSMGAG00000009823)	PIK3CA (ENSMGAG00000009828)	ZMAT3 (ENSMGAG00000009873)	KCNMB2 (ENSMGAG00000009882)	ENSMGAG00000021926	TBL1XR1 (ENSMGAG00000009892) ##22	NAALADL2 (ENSMGAG00000009912)	NLGN1 (ENSMGAG00000009919)	SPATA16 (ENSMGAG00000009930)	ECT2 (ENSMGAG00000009941)	NCEH1 (ENSMGAG00000010017)	TNFSF10 (ENSMGAG00000010032)	GHSR (ENSMGAG00000010038)	ENSMGAG00000021574	C18orf32 (ENSMGAG00000001347)	LIPG (ENSMGAG00000001317)	ACAA2 (ENSMGAG00000001246)	ENSMGAG00000001176	ENSMGAG00000019728	FNDC3B (ENSMGAG00000010040)	PLD1 (ENSMGAG00000010081)
Chicken	MODERN SPECIES	38	DNAJC19 (ENSGALG00010016614)	FXR1 (ENSGALG00010016652)	CCDC39 (ENSGALG00010018026)	TTC14 (ENSGALG00010018039)	PEX5L (ENSGALG00010018055)	USP13 (ENSGALG00010018123)	NDUFB5 (ENSGALG00010018137)	MRPL47 (ENSGALG00010018143)	ACTL6A (ENSGALG00010018172)	GNB4 (ENSGALG00010018185)	MFN1 (ENSGALG00010018255)	ZNF639 (ENSGALG00010018275)	PIK3CA (ENSGALG00010018296)	ZMAT3 (ENSGALG00010018317)	KCNMB2 (ENSGALG00010018349)	TBL1XR1 (ENSGALG00010018396) ##22	NAALADL2 (ENSGALG00010018465)	NLGN1 (ENSGALG00010018484)	SPATA16 (ENSGALG00010018507)	ECT2 (ENSGALG00010018517)	NCEH1 (ENSGALG00010018534)	TNFSF10 (ENSGALG00010018540)	GHSR (ENSGALG00010018549)	FNDC3B (ENSGALG00010018579)	PLD1 (ENSGALG00010014093)	TNIK (ENSGALG00010013911)	ENSGALG00010013947	SLC2A2 (ENSGALG00010013965)	EIF5A2 (ENSGALG00010014010)	RPL22L1 (ENSGALG00010014031)	SLC7A14 (ENSGALG00010017602)
Japanese quail	MODERN SPECIES	27	DNAJC19 (ENSCJPG00005014236)	FXR1 (ENSCJPG00005014242)	CCDC39 (ENSCJPG00005014244)	TTC14 (ENSCJPG00005014245)	PEX5L (ENSCJPG00005014246)	USP13 (ENSCJPG00005014247)	NDUFB5 (ENSCJPG00005014248)	MRPL47 (ENSCJPG00005014249)	ACTL6A (ENSCJPG00005014250)	GNB4 (ENSCJPG00005014251)	MFN1 (ENSCJPG00005014252)	ZNF639 (ENSCJPG00005014253)	PIK3CA (ENSCJPG00005014254)	ZMAT3 (ENSCJPG00005014255)	KCNMB2 (ENSCJPG00005014256)	TBL1XR1 (ENSCJPG00005014262) ##22	NAALADL2 (ENSCJPG00005014265)	NLGN1 (ENSCJPG00005014267)	SPATA16 (ENSCJPG00005014270)	ECT2 (ENSCJPG00005014271)	NCEH1 (ENSCJPG00005014272)	TNFSF10 (ENSCJPG00005014273)	GHS-R (ENSCJPG00005014274)	FNDC3B (ENSCJPG00005014275)	PLD1 (ENSCJPG00005014277)	TNIK (ENSCJPG00005014297)	ENSCJPG00005017898	SLC2A2 (ENSCJPG00005017899)	EIF5A2 (ENSCJPG00005017900)	RPL22L1 (ENSCJPG00005017901)	SLC7A14 (ENSCJPG00005017902)
African ostrich	MODERN SPECIES	563															KCNMB2 (ENSSCUG00000008078)	TBL1XR1 (ENSSCUG00000008069) ##22	NAALADL2 (ENSSCUG00000008053)	NLGN1 (ENSSCUG00000008050)	SPATA16 (ENSSCUG00000008049)	ENSSCUG00000008048	ENSSCUG00000008047	NCEH1 (ENSSCUG00000008045)	TNFSF10 (ENSSCUG00000008044)	GHSR (ENSSCUG00000008041)	FNDC3B (ENSSCUG00000008036)	TMEM212 (ENSSCUG00000008032)	PLD1 (ENSSCUG00000008028)	TNIK (ENSSCUG00000008019)	SLC2A2 (ENSSCUG00000008012)	EIF5A2 (ENSSCUG00000008011)	RPL22L1 (ENSSCUG00000008010)
Australian saltwater crocodile	MODERN SPECIES	30	CCDC39 (ENSCPRG00005010308)	ENSCPRG00005010293	TTC14 (ENSCPRG00005010137)	PEX5L (ENSCPRG00005010104)	USP13 (ENSCPRG00005010083)	NDUFB5 (ENSCPRG00005010066)	MRPL47 (ENSCPRG00005010062)	ACTL6A (ENSCPRG00005010054)	GNB4 (ENSCPRG00005009816)	MFN1 (ENSCPRG00005009802)	ZNF639 (ENSCPRG00005009780)	ENSCPRG00005009658	ZMAT3 (ENSCPRG00005009651)	KCNMB2 (ENSCPRG00005009647)	ENSCPRG00005009640	TBL1XR1 (ENSCPRG00005009616) ##22	NAALADL2 (ENSCPRG00005009597)	ENSCPRG00005009587	ENSCPRG00005009577	SPATA16 (ENSCPRG00005009547)	ECT2 (ENSCPRG00005009519)	NCEH1 (ENSCPRG00005009516)	TNFSF10 (ENSCPRG00005009508)	GHSR (ENSCPRG00005009499)	FNDC3B (ENSCPRG00005009467)	TMEM212 (ENSCPRG00005009462)	PLD1 (ENSCPRG00005009444)	TNIK (ENSCPRG00005009378)	SLC2A2 (ENSCPRG00005009357)	EIF5A2 (ENSCPRG00005009352)	RPL22L1 (ENSCPRG00005009347)
Cryptodira	ANCESTRAL SPECIES	16	ENSGT00950000183189.a.b.a	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT01030000235369.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000163015	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509
Testudinoidea	ANCESTRAL SPECIES	9	ENSGT00390000015010	ENSGT00390000013701.m	ENSGT00390000013701.n	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT01030000235369.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000163015	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509
Emydidae	ANCESTRAL SPECIES	3	ENSGT00390000015010	ENSGT00390000013701.m	ENSGT00390000013701.n	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT01030000235369.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000163015	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509
Three-toed box turtle	MODERN SPECIES	32	FXR1 (ENSTMTG00000010020)	CCDC39 (ENSTMTG00000009881)	TTC14 (ENSTMTG00000009812)	PEX5L (ENSTMTG00000009761)	USP13 (ENSTMTG00000009685)	NDUFB5 (ENSTMTG00000009666)	MRPL47 (ENSTMTG00000009647)	ACTL6A (ENSTMTG00000009615)	GNB4 (ENSTMTG00000009587)	MFN1 (ENSTMTG00000009563)	ZNF639 (ENSTMTG00000009549)	ENSTMTG00000009517	PIK3CA (ENSTMTG00000009470)	ZMAT3 (ENSTMTG00000009458)	KCNMB2 (ENSTMTG00000009434)	TBL1XR1 (ENSTMTG00000009406) ##22	NAALADL2 (ENSTMTG00000009348)	NLGN1 (ENSTMTG00000009329)	SPATA16 (ENSTMTG00000009298)	ENSTMTG00000009279	ENSTMTG00000009230	NCEH1 (ENSTMTG00000009220)	TNFSF10 (ENSTMTG00000009207)	GHSR (ENSTMTG00000009177)	FNDC3B (ENSTMTG00000009145)	TMEM212 (ENSTMTG00000009120)	PLD1 (ENSTMTG00000008407)	ENSTMTG00000008303	ENSTMTG00000008259	SLC2A2 (ENSTMTG00000008232)	EIF5A2 (ENSTMTG00000008217)
painted turtle	MODERN SPECIES	748	CCDC39 (ENSCPBG00000000173)	ENSCPBG00000026955	ENSCPBG00000026954	PEX5L (ENSCPBG00000026944)	USP13 (ENSCPBG00000026936)	NDUFB5 (ENSCPBG00000026935)	MRPL47 (ENSCPBG00000026934)	ACTL6A (ENSCPBG00000026932)	GNB4 (ENSCPBG00000026930)	MFN1 (ENSCPBG00000026929)	ZNF639 (ENSCPBG00000026927)	ENSCPBG00000026924	PIK3CA (ENSCPBG00000026921)	ZMAT3 (ENSCPBG00000026917)	KCNMB2 (ENSCPBG00000026916)	TBL1XR1 (ENSCPBG00000026909) ##22	ENSCPBG00000026899	NAALADL2 (ENSCPBG00000026894)
Testudinidae	ANCESTRAL SPECIES	7	ENSGT00390000015010	ENSGT00390000013701.m	ENSGT00390000013701.n	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT01030000235369.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000163015	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509
Abingdon island giant tortoise	MODERN SPECIES	76	FXR1 (ENSCABG00000019346)	CCDC39 (ENSCABG00000019333)	TTC14 (ENSCABG00000019328)	PEX5L (ENSCABG00000019326)	USP13 (ENSCABG00000019324)	NDUFB5 (ENSCABG00000019321)	MRPL47 (ENSCABG00000019319)	ACTL6A (ENSCABG00000019237)	GNB4 (ENSCABG00000019060)	MFN1 (ENSCABG00000017278)	ZNF639 (ENSCABG00000017240)	ENSCABG00000017237	PIK3CA (ENSCABG00000016963)	ZMAT3 (ENSCABG00000016877)	KCNMB2 (ENSCABG00000016876)	TBL1XR1 (ENSCABG00000016872) ##22
Goode s thornscrub tortoise	MODERN SPECIES	23	CCDC39 (ENSGEVG00005007473)	ENSGEVG00005007619	ENSGEVG00005007645	PEX5L (ENSGEVG00005007677)	USP13 (ENSGEVG00005007750)	NDUFB5 (ENSGEVG00005007886)	MRPL47 (ENSGEVG00005007908)	ACTL6A (ENSGEVG00005007939)	GNB4 (ENSGEVG00005007979)	MFN1 (ENSGEVG00005008013)	ZNF639 (ENSGEVG00005008054)	ENSGEVG00005008073	PIK3CA (ENSGEVG00005008110)	ZMAT3 (ENSGEVG00005008132)	KCNMB2 (ENSGEVG00005008147)	TBL1XR1 (ENSGEVG00005008179) ##22	NAALADL2 (ENSGEVG00005008241)	NLGN1 (ENSGEVG00005008306)	ENSGEVG00005008327	SPATA16 (ENSGEVG00005008353)	ENSGEVG00005008394	ENSGEVG00005008421	NCEH1 (ENSGEVG00005008435)	TNFSF10 (ENSGEVG00005008453)	GHSR (ENSGEVG00005008495)	FNDC3B (ENSGEVG00005009065)	TMEM212 (ENSGEVG00005012875)	PLD1 (ENSGEVG00005012935)	TNIK (ENSGEVG00005013704)	SLC2A2 (ENSGEVG00005017654)	EIF5A2 (ENSGEVG00005017696)
Chinese turtle	MODERN SPECIES	2246															ENSPSIG00000017262	TBL1XR1 (ENSPSIG00000017266) ##22	NAALADL2 (ENSPSIG00000008237)	NLGN1 (ENSPSIG00000008922)	ENSPSIG00000000233	CDK18 (ENSPSIG00000009607)	MFSD4A (ENSPSIG00000012058)	ELK4 (ENSPSIG00000013052)	ENSPSIG00000013477	SLC45A3 (ENSPSIG00000013533)	ENSPSIG00000014060	ENSPSIG00000014075	ENSPSIG00000014334	ENSPSIG00000014539	ENSPSIG00000014789 #34	ENSPSIG00000000238	TMEM47 (ENSPSIG00000014892) #36
Lepidosauria	ANCESTRAL SPECIES	12	ENSGT00390000015010	ENSGT00960000190572	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT01030000235369	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000163015	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509
Episquamata	ANCESTRAL SPECIES	2	ENSGT00960000190572	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT00390000011515	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT01030000235369	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000163015	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509
Laterata	ANCESTRAL SPECIES		ENSGT00960000190572	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT00390000011515	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT01030000235369	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509	ENSGT00940000155893.b
Common wall lizard	MODERN SPECIES	13	ENSPMRG00000003959	ACTL6A (ENSPMRG00000003934)	NIFK (ENSPMRG00000003928)	ENSPMRG00000003923	GNB4 (ENSPMRG00000003918)	MFN1 (ENSPMRG00000003386)	ZNF639 (ENSPMRG00000003214)	ENSPMRG00000003204	PIK3CA (ENSPMRG00000003186)	ENSPMRG00000003168	ENSPMRG00000003165	ENSPMRG00000003152	KCNMB2 (ENSPMRG00000003126)	ENSPMRG00000003104	ENSPMRG00000003094	TBL1XR1 (ENSPMRG00000003048) ##22	ENSPMRG00000003026	ENSPMRG00000003019	ENSPMRG00000003008	ENSPMRG00000003002	ENSPMRG00000002994	ENSPMRG00000002988	NAALADL2 (ENSPMRG00000002959)	NLGN1 (ENSPMRG00000002947)	ENSPMRG00000009548	SPATA16 (ENSPMRG00000009535)	ECT2 (ENSPMRG00000009462)	ENSPMRG00000009447	NCEH1 (ENSPMRG00000009443)	TNFSF10 (ENSPMRG00000009429)	GHSR (ENSPMRG00000009415)
Argentine black and white tegu	MODERN SPECIES	21	ENSSMRG00000023609	PEX5L (ENSSMRG00000023610)	USP13 (ENSSMRG00000023611)	NDUFB5 (ENSSMRG00000023612)	MRPL47 (ENSSMRG00000023613)	ACTL6A (ENSSMRG00000023614)	NIFK (ENSSMRG00000023616)	ENSSMRG00000023617	ENSSMRG00000023618	MFN1 (ENSSMRG00000023619)	ZNF639 (ENSSMRG00000023620)	ENSSMRG00000023621	PIK3CA (ENSSMRG00000023622)	ZMAT3 (ENSSMRG00000023623)	KCNMB2 (ENSSMRG00000023624)	TBL1XR1 (ENSSMRG00000023626) ##22	NAALADL2 (ENSSMRG00000023630)	NLGN1 (ENSSMRG00000023635)	SPATA16 (ENSSMRG00000023636)	ECT2 (ENSSMRG00000023637)	NCEH1 (ENSSMRG00000023639)	TNFSF10 (ENSSMRG00000023640)	GHSR (ENSSMRG00000023641)	FNDC3B (ENSSMRG00000023642)	TMEM212 (ENSSMRG00000023644)	PLD1 (ENSSMRG00000023645)	TNIK (ENSSMRG00000023646)	SLC2A2 (ENSSMRG00000023647)	EIF5A2 (ENSSMRG00000023648)	RPL22L1 (ENSSMRG00000023649)	SLC7A14 (ENSSMRG00000023650)
Toxicofera	ANCESTRAL SPECIES	2	ENSGT00960000190572	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT00390000011515	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT01030000235369	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000163015	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509
Elapidae	ANCESTRAL SPECIES	4	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT00390000011515	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT01030000235369	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00390000006293.td	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000163015	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509
Elapidae_a	DUPLICATION
Elapidae_a	ANCESTRAL SPECIES		ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT00390000011515	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT01030000235369	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00390000006293.td	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b.u ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000163015	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509
Acanthophiinae	ANCESTRAL SPECIES	1	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT00390000011515	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT01030000235369	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00390000006293.td	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b.u ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000163015	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509
Mainland tiger snake	MODERN SPECIES		TTC14 (ENSNSUG00000004573)	PEX5L (ENSNSUG00000004565)	USP13 (ENSNSUG00000004559)	NDUFB5 (ENSNSUG00000004556)	MRPL47 (ENSNSUG00000004553)	ACTL6A (ENSNSUG00000004551)	NIFK (ENSNSUG00000004538)	GNB4 (ENSNSUG00000004440)	MFN1 (ENSNSUG00000004432)	ZNF639 (ENSNSUG00000004427)	ENSNSUG00000004425	PIK3CA (ENSNSUG00000003932)	ZMAT3 (ENSNSUG00000003923)	ENSNSUG00000003919	KCNMB2 (ENSNSUG00000003916)	TBL1XR1 (ENSNSUG00000003899) ##22	NAALADL2 (ENSNSUG00000003894)	NLGN1 (ENSNSUG00000003879)	ENSNSUG00000003867	ENSNSUG00000003858	SPATA16 (ENSNSUG00000003835)	ENSNSUG00000003831	ENSNSUG00000003817	NCEH1 (ENSNSUG00000003814)	TNFSF10 (ENSNSUG00000003810)	GHSR (ENSNSUG00000003794)	ENSNSUG00000003787	FNDC3B (ENSNSUG00000002814)	TMEM212 (ENSNSUG00000002795)	PLD1 (ENSNSUG00000002615)	ENSNSUG00000002609
Eastern brown snake	MODERN SPECIES	29	ENSPTXG00000017651	ENSPTXG00000017653	TTC14 (ENSPTXG00000017654)	PEX5L (ENSPTXG00000017655)	USP13 (ENSPTXG00000017659)	NDUFB5 (ENSPTXG00000017750)	MRPL47 (ENSPTXG00000017751)	ACTL6A (ENSPTXG00000017752)	NIFK (ENSPTXG00000017754)	GNB4 (ENSPTXG00000017756)	MFN1 (ENSPTXG00000017761)	ZNF639 (ENSPTXG00000017805)	PIK3CA (ENSPTXG00000017806)	ZMAT3 (ENSPTXG00000017808)	KCNMB2 (ENSPTXG00000017809)	TBL1XR1 (ENSPTXG00000013314) ##22	NAALADL2 (ENSPTXG00000013319)	NLGN1 (ENSPTXG00000013325)	SPATA16 (ENSPTXG00000013329)	ENSPTXG00000013331	ENSPTXG00000013332	NCEH1 (ENSPTXG00000013334)	TNFSF10 (ENSPTXG00000013335)	GHSR (ENSPTXG00000013337)	FNDC3B (ENSPTXG00000013338)	ENSPTXG00000013339	TMEM212 (ENSPTXG00000013340)	PLD1 (ENSPTXG00000013341)	TNIK (ENSPTXG00000013343)	ENSPTXG00000013344	SLC2A2 (ENSPTXG00000013345)
Blue-lipped sea krait	MODERN SPECIES	1063																ENSLLTG00000006889 ##22
Elapidae_a	ANCESTRAL SPECIES																	ENSGT00940000153421.a.b.v ##22
Blue-lipped sea krait	MODERN SPECIES	1578																ENSLLTG00000000942 ##22
Indian cobra	MODERN SPECIES	3	TTC14 (ENSNNAG00000008565)	PEX5L (ENSNNAG00000008347)	USP13 (ENSNNAG00000008293)	NDUFB5 (ENSNNAG00000008239)	MRPL47 (ENSNNAG00000008025)	ACTL6A (ENSNNAG00000007971)	NIFK (ENSNNAG00000007941)	GNB4 (ENSNNAG00000007920)	MFN1 (ENSNNAG00000007861)	ZNF639 (ENSNNAG00000007836)	PIK3CA (ENSNNAG00000007680)	ZMAT3 (ENSNNAG00000007645)	ENSNNAG00000007631	ENSNNAG00000007595	KCNMB2 (ENSNNAG00000016680)	TBL1XR1 (ENSNNAG00000016658) ##22	NAALADL2 (ENSNNAG00000016653)	NLGN1 (ENSNNAG00000016645)	SPATA16 (ENSNNAG00000016632)	ECT2 (ENSNNAG00000016490)	NCEH1 (ENSNNAG00000016440)	TNFSF10 (ENSNNAG00000016427)	GHSR (ENSNNAG00000016421)	FNDC3B (ENSNNAG00000016356)	TMEM212 (ENSNNAG00000016341)	ENSNNAG00000016338	PLD1 (ENSNNAG00000016268)	ENSNNAG00000016239	TNIK (ENSNNAG00000012451)	SLC2A2 (ENSNNAG00000011868)	EIF5A2 (ENSNNAG00000011836)
Lizard	MODERN SPECIES	2	NDUFB5 (ENSACAG00000004465)	MRPL47 (ENSACAG00000043862)	ACTL6A (ENSACAG00000004548)	ENSACAG00000044517	ENSACAG00000004655	GNB4 (ENSACAG00000004667)	MFN1 (ENSACAG00000004702)	ZNF639 (ENSACAG00000044413)	PIK3CA (ENSACAG00000004872)	ZMAT3 (ENSACAG00000005005)	ENSACAG00000042133	KCNMB2 (ENSACAG00000005012)	ENSACAG00000036596	ENSACAG00000040731	ENSACAG00000041605	TBL1XR1 (ENSACAG00000013442) ##22	ENSACAG00000037636	ENSACAG00000034977	NAALADL2 (ENSACAG00000029348)	ENSACAG00000041682	NLGN1 (ENSACAG00000016546)	ENSACAG00000039077	ENSACAG00000037640	ENSACAG00000035896	ENSACAG00000038799	ENSACAG00000034608	ENSACAG00000039420	SPATA16 (ENSACAG00000016524)	ENSACAG00000040927	ENSACAG00000041861	ECT2 (ENSACAG00000016429)
tuatara	MODERN SPECIES	1534	FXR1 (ENSSPUG00000014501)	CCDC39 (ENSSPUG00000014545)	ENSSPUG00000014559	ENSSPUG00000014567	PEX5L (ENSSPUG00000014580)	USP13 (ENSSPUG00000014601)	NDUFB5 (ENSSPUG00000014622)	MRPL47 (ENSSPUG00000014635)	ACTL6A (ENSSPUG00000014641)	GNB4 (ENSSPUG00000014672)	MFN1 (ENSSPUG00000014691)	ZNF639 (ENSSPUG00000014710)	PIK3CA (ENSSPUG00000014720)	ZMAT3 (ENSSPUG00000014753)	KCNMB2 (ENSSPUG00000014799)	TBL1XR1 (ENSSPUG00000014823) ##22
Anura	ANCESTRAL SPECIES	26	ENSGT00950000183189.a.b.a	ENSGT00390000015010	ENSGT00390000013701	ENSGT00940000155931	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT01000000214413.b.a.a	ENSGT00390000013727.d	ENSGT00940000156335	ENSGT00950000183039.B.a	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b ##22	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b	ENSGT01100000263484.C.b.a	ENSGT00940000157005	ENSGT00390000016029	ENSGT00940000155015	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b	ENSGT00940000154509	ENSGT00940000155893.b
Frog	MODERN SPECIES	5	fxr1 (ENSXETG00000019441)	ccdc39 (ENSXETG00000019437)	ttc14 (ENSXETG00000019435)	pex5l (ENSXETG00000032445)	usp13 (ENSXETG00000007265)	ndufb5 (ENSXETG00000007264)	mrpl47 (ENSXETG00000029930)	actl6a (ENSXETG00000007260)	gnb4 (ENSXETG00000007259)	mfn1 (ENSXETG00000007258)	znf639 (ENSXETG00000007256)	kcnmb3 (ENSXETG00000007254)	pik3ca (ENSXETG00000007252)	zmat3 (ENSXETG00000007251)	kcnmb2 (ENSXETG00000037867)	tbl1xr1 (ENSXETG00000001521) ##22	naaladl2 (ENSXETG00000040453)	nlgn1 (ENSXETG00000001525)	ENSXETG00000044786	ENSXETG00000030915	ect2 (ENSXETG00000023596)	nceh1 (ENSXETG00000038694)	tnfsf10 (ENSXETG00000030595)	ENSXETG00000047368	ghsr (ENSXETG00000023610)	fndc3b (ENSXETG00000023615)	ENSXETG00000042406	pld1 (ENSXETG00000009136)	tmem212 (ENSXETG00000009134)	tnik (ENSXETG00000009142)	slc2a2 (ENSXETG00000039156)
Leishan spiny toad	MODERN SPECIES	7	NDUFB5 (ENSLLEG00000028412)	ENSLLEG00000028388	ENSLLEG00000028299	ENSLLEG00000028118	ENSLLEG00000028077	GNB4 (ENSLLEG00000027982)	MFN1 (ENSLLEG00000027892)	ENSLLEG00000027869	ENSLLEG00000027846	KCNMB3 (ENSLLEG00000027813)	PIK3CA (ENSLLEG00000027506)	ENSLLEG00000027471	ZMAT3 (ENSLLEG00000027411)	KCNMB2 (ENSLLEG00000027366)	ENSLLEG00000027333	TBL1XR1 (ENSLLEG00000027031) ##22	ENSLLEG00000026984	NAALADL2 (ENSLLEG00000026863)	NLGN1 (ENSLLEG00000026838)	ENSLLEG00000026804	SPATA16 (ENSLLEG00000026330)	ECT2 (ENSLLEG00000025676)	ENSLLEG00000025608	ENSLLEG00000025509	ENSLLEG00000025254	TNFSF10 (ENSLLEG00000025153)	GHSR (ENSLLEG00000025112)	FNDC3B (ENSLLEG00000024951)	ENSLLEG00000024901	TMEM212 (ENSLLEG00000024853)	PLD1 (ENSLLEG00000024604)
Coelacanth	MODERN SPECIES	333	DNAJC19 (ENSLACG00000011183)	FXR1 (ENSLACG00000011290)	CCDC39 (ENSLACG00000012072)	TTC14 (ENSLACG00000012412)	PEX5L (ENSLACG00000013935)	USP13 (ENSLACG00000014314)	NDUFB5 (ENSLACG00000014749)	MRPL47 (ENSLACG00000014781)	ACTL6A (ENSLACG00000014797)	GNB4 (ENSLACG00000014929)	MFN1 (ENSLACG00000015275)	KCNMB3 (ENSLACG00000015425)	PIK3CA (ENSLACG00000015507)	ZMAT3 (ENSLACG00000015780)	KCNMB2 (ENSLACG00000015936)	TBL1XR1 (ENSLACG00000016986) ##22
Elephant shark	MODERN SPECIES	1486			phb2 (ENSCMIG00000003203)	pde6d (ENSCMIG00000003180)	ENSCMIG00000003168	PEX5L (ENSCMIG00000003135)	usp13 (ENSCMIG00000003077)	ndufb5 (ENSCMIG00000003066)	mrpl47 (ENSCMIG00000003057)	actl6a (ENSCMIG00000002701)	gnb4b (ENSCMIG00000002549)	MFN1 (ENSCMIG00000002484)	PIK3CA (ENSCMIG00000002435)	ZMAT3 (ENSCMIG00000002413)	kcnmb2 (ENSCMIG00000002407)	TBL1XR1 (ENSCMIG00000002022) ##22	NAALADL2 (ENSCMIG00000001850)	nlgn1 (ENSCMIG00000001796)	SPATA16 (ENSCMIG00000001766)	ect2 (ENSCMIG00000001575)	nceh1b.1 (ENSCMIG00000001486)	CCDC150 (ENSCMIG00000001447)	ENSCMIG00000001393	ENSCMIG00000001178	ENSCMIG00000001004	PLCH1 (ENSCMIG00000000888)	C3orf33 (ENSCMIG00000000870)	slc33a1 (ENSCMIG00000000865)	gmps (ENSCMIG00000000610)	ENSCMIG00000000536	ENSCMIG00000000520
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000153421.b ##22
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000153421.b ##22
Hagfish	MODERN SPECIES	946	tada3l (ENSEBUG00000016666)	ENSEBUG00000002172	manf (ENSEBUG00000009803)	ENSEBUG00000012942	ENSEBUG00000013136	ENSEBUG00000001894	ENSEBUG00000009898	ENSEBUG00000016974	ENSEBUG00000013566	cdc16 (ENSEBUG00000001267)	ENSEBUG00000000396	ENSEBUG00000006348	ENSEBUG00000002112	ENSEBUG00000009901	ENSEBUG00000013733	tbl1xr1a (ENSEBUG00000003035) ##22	arpc4 (ENSEBUG00000008348)	cpne5a (ENSEBUG00000010662)	ENSEBUG00000001422	TBC1D22B (ENSEBUG00000011637)	ENSEBUG00000008771	ENSEBUG00000015530	ENSEBUG00000013232	pmpcb (ENSEBUG00000001846)	ENSEBUG00000005752	slc2a13b (ENSEBUG00000003317)	ENSEBUG00000012044	ENSEBUG00000007203	ENSEBUG00000010668	ENSEBUG00000000612
Gnathostomata	ANCESTRAL SPECIES	940															ENSGT00440000033720.a	ENSGT00940000153421.b ##22	ENSGT00390000016722
Elephant shark	MODERN SPECIES	1503	ucp2 (ENSCMIG00000018023)	ENSCMIG00000018026	dnajb13 (ENSCMIG00000018032)	PAAF1 (ENSCMIG00000018036)	mrpl48 (ENSCMIG00000018042)	rab6a (ENSCMIG00000018069)	plekhb1 (ENSCMIG00000018102)	FAM168A (ENSCMIG00000018103)	ENSCMIG00000018106	ARHGEF17 (ENSCMIG00000018121)	rps3 (ENSCMIG00000018142)	ENSCMIG00000018166	ENSCMIG00000018189	ENSCMIG00000018212	anos1a (ENSCMIG00000018216)	ENSCMIG00000018261 ##22	GPR143 (ENSCMIG00000018335)	ENSCMIG00000018341	ATP7B (ENSCMIG00000018356)	alg11 (ENSCMIG00000018394)	ENSCMIG00000018399	ENSCMIG00000018403	ENSCMIG00000018404	NEK3 (ENSCMIG00000018407)	ENSCMIG00000018411	vps36 (ENSCMIG00000018414)	THSD1 (ENSCMIG00000018425)	fgl1b (ENSCMIG00000018449)	tpte (ENSCMIG00000018458)	slc25a15 (ENSCMIG00000018463)	mrps31 (ENSCMIG00000018467)
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00940000153421.b ##22
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00940000153421.b ##22
Reedfish	MODERN SPECIES	12	asmt (ENSECRG00000012489)	ENSECRG00000012454	gyg2 (ENSECRG00000012392)	ARSD (ENSECRG00000012356)	ENSECRG00000012337	ENSECRG00000012314	MXRA5 (ENSECRG00000012288)	PRKX (ENSECRG00000012152) #23	nlgn4xa (ENSECRG00000012095)	ENSECRG00000012081	pudp (ENSECRG00000012070)	pnpla4 (ENSECRG00000012054)	STS (ENSECRG00000012034)	ENSECRG00000012028	anos1a (ENSECRG00000011997)	ENSECRG00000011933 ##22	GPR143 (ENSECRG00000011879)	ASB9 (ENSECRG00000011860)	ENSECRG00000011847	FANCB (ENSECRG00000011837)	glra2 (ENSECRG00000011812)	gemin8 (ENSECRG00000011793)	gpm6bb (ENSECRG00000011755)	ofd1 (ENSECRG00000011678)	TRAPPC2B (ENSECRG00000011650)	rab9a (ENSECRG00000011642)	TCEANC (ENSECRG00000011624)	egfl6 (ENSECRG00000011602)	ENSECRG00000011590	ENSECRG00000011578	TLR8 (ENSECRG00000011567)
Sarcopterygii	ANCESTRAL SPECIES																	ENSGT00940000153421.b ##22
Tetrapoda	ANCESTRAL SPECIES																	ENSGT00940000153421.b ##22
Amniota	ANCESTRAL SPECIES																	ENSGT00940000153421.b ##22
Sauria	ANCESTRAL SPECIES	2	ENSGT00940000161561	ENSGT00940000162345	ENSGT00940000163186	ENSGT00940000154344.b.i	ENSGT00940000161628	ENSGT00940000161140.k.a	ENSGT00940000161140.l	ENSGT00940000161140.k.b	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.b ##22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717.a #21	ENSGT00950000186462	ENSGT00390000005717.b.b #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879.p.a
Archelosauria	ANCESTRAL SPECIES		ENSGT00940000162345	ENSGT00940000163186	ENSGT00940000154344.b.i	ENSGT00940000161628	ENSGT00940000161140.k.a	ENSGT00940000161140.l	ENSGT00940000161140.k.b	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a.s	ENSGT00390000014753	ENSGT00940000161153	ENSGT00990000210496	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.b ##22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717.a #21	ENSGT00950000186462	ENSGT00390000005717.b.b #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879.p.a
Cryptodira	ANCESTRAL SPECIES		ENSGT00940000163186	ENSGT00940000154344.b.i	ENSGT00940000161628	ENSGT00940000161140.k.a	ENSGT00940000161140.l	ENSGT00940000161140.k.b	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a.r.a	ENSGT00940000156607.a.a.r.b	ENSGT00390000014753	ENSGT00940000161153	ENSGT00990000210496	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.b ##22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717.a.a #21	ENSGT00390000005717.a.b #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00940000153904.a	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879.p.a	ENSGT00940000160879.p.b	ENSGT00940000160879.o
Testudinoidea	ANCESTRAL SPECIES	1	ENSGT00940000163186	ENSGT00940000154344.b.i	ENSGT00940000161628	ENSGT00940000161140.k.a	ENSGT00940000161140.l	ENSGT00940000161140.k.b	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a.r.a	ENSGT00940000156607.a.a.r.b	ENSGT00390000014753	ENSGT00940000161153	ENSGT00990000210496	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.b ##22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717.a.a #21	ENSGT00390000005717.b.a #21	ENSGT00390000005717.b.b #21	ENSGT00390000005717.a.b #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00940000153904.a	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879.p.a
Emydidae	ANCESTRAL SPECIES	30	ENSGT00940000161561.l	ENSGT00940000162345	ENSGT00940000154344.b.i	ENSGT00940000161628	ENSGT00940000161140.k.a	ENSGT00940000161140.l	ENSGT00940000161140.k.b	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a.r.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00990000210496	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.b ##22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717.a.a #21	ENSGT00390000005717.b.a #21
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	5									ENSTMTG00000001433	ENSTMTG00000001443	ENSTMTG00000001472	ENSTMTG00000001553	ENSTMTG00000001559	ENSTMTG00000001571	ENSTMTG00000001594	ENSTMTG00000001734 ##22	ENSTMTG00000002267	ENSTMTG00000002274	ENSTMTG00000002276	ENSTMTG00000002285 #21	ENSTMTG00000002305	ENSTMTG00000002323	ENSTMTG00000002346	ENSTMTG00000002374	ENSTMTG00000002432	ENSTMTG00000002475	ENSTMTG00000002479	ENSTMTG00000002482	ENSTMTG00000002492	ENSTMTG00000002494	ENSTMTG00000002500
Three-toed box turtle	MODERN SPECIES	6	ENSTMTG00000010991	ENSTMTG00000011032	ENSTMTG00000011042	ENSTMTG00000011128	ENSTMTG00000011624	ENSTMTG00000011644	ENSTMTG00000011656	ENSTMTG00000011683 #23	ENSTMTG00000011703	ENSTMTG00000011716	ENSTMTG00000011737	STS (ENSTMTG00000011746)	ENSTMTG00000011757	ENSTMTG00000011766	ENSTMTG00000011796	ENSTMTG00000012012 ##22	ENSTMTG00000013127	ENSTMTG00000013159	ENSTMTG00000013186 #21	ENSTMTG00000013214 #21	ENSTMTG00000013248	ENSTMTG00000013422	ENSTMTG00000013516	ENSTMTG00000013549	ENSTMTG00000013679	ENSTMTG00000013739	ENSTMTG00000013936	ENSTMTG00000013942	ENSTMTG00000013964	ENSTMTG00000007156	ENSTMTG00000007168
painted turtle	MODERN SPECIES	694												ENSCPBG00000010528	ANOS1 (ENSCPBG00000010517)	ENSCPBG00000010509	ENSCPBG00000010504	ENSCPBG00000010488 ##22	GPR143 (ENSCPBG00000010480)	SHROOM2 (ENSCPBG00000010455)	ENSCPBG00000010444 #21	ENSCPBG00000010440 #21	ENSCPBG00000010438 #21	ENSCPBG00000010434	ENSCPBG00000010423	ENSCPBG00000010408	ENSCPBG00000010398	PUDP (ENSCPBG00000010391)	STS (ENSCPBG00000010386)	PNPLA4 (ENSCPBG00000010374)	ENSCPBG00000010369	ZBED1 (ENSCPBG00000010368)	CD99 (ENSCPBG00000010364)
Testudinidae	ANCESTRAL SPECIES		ENSGT00940000161561.n	ENSGT01070000254090	ENSGT00940000163186	ENSGT00940000154344.b.i	ENSGT00940000161628	ENSGT00940000161140.k.a	ENSGT00940000161140.l	ENSGT00940000161140.k.b	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a.r.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.b ##22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717.a.a #21	ENSGT00390000005717.b.a #21	ENSGT00390000005717.b.b #21	ENSGT00390000005717.a.b #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00940000153904.a	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879.p.a
Abingdon island giant tortoise	MODERN SPECIES	562															ENSCABG00000012514	ENSCABG00000012518 ##22	GPR143 (ENSCABG00000012531)	ENSCABG00000012536
Goode s thornscrub tortoise	MODERN SPECIES		ZBED1 (ENSGEVG00005003794)	CD99 (ENSGEVG00005003837)	GYG2 (ENSGEVG00005003861)	ENSGEVG00005004029	ENSGEVG00005004367	ENSGEVG00005004506	MXRA5 (ENSGEVG00005004744)	ENSGEVG00005004791 #23	ENSGEVG00005004851 #23	ENSGEVG00005004964	PUDP (ENSGEVG00005004994)	STS (ENSGEVG00005005022)	PNPLA4 (ENSGEVG00005005056)	ANOS1 (ENSGEVG00005005121)	ENSGEVG00005005279	ENSGEVG00005005306 ##22	GPR143 (ENSGEVG00005005366)	ENSGEVG00005005459	ENSGEVG00005005508 #21	ENSGEVG00005005554 #21	WWC3 (ENSGEVG00005005589)	ENSGEVG00005005662	CLCN4 (ENSGEVG00005005689)	MID1 (ENSGEVG00005005752)	ARHGAP6 (ENSGEVG00005005890)	MSL3 (ENSGEVG00005006069)	FRMPD4 (ENSGEVG00005006115)	PRPS2 (ENSGEVG00005006252)	TLR7 (ENSGEVG00005006279)	ENSGEVG00005006350	ENSGEVG00005006384
Chinese turtle	MODERN SPECIES	861																ENSPSIG00000009181 ##22	ENSPSIG00000009172	ENSPSIG00000009165	SHROOM2 (ENSPSIG00000008921)	CLDN34 (ENSPSIG00000001805) #21	WWC3 (ENSPSIG00000008857)	CLCN4 (ENSPSIG00000007929)	MID1 (ENSPSIG00000007031)	ARHGAP6 (ENSPSIG00000006996)	ENSPSIG00000001803	SGO1 (ENSPSIG00000006892)	KAT2B (ENSPSIG00000008737)	ENSPSIG00000008583	PP2D1 (ENSPSIG00000008299)	RAB5A (ENSPSIG00000007157)	EFHB (ENSPSIG00000005310)
Archosauria	ANCESTRAL SPECIES	2	ENSGT00940000162345	ENSGT00940000163186	ENSGT00940000154344.b.i	ENSGT00940000161628	ENSGT00940000161140.k.a	ENSGT00940000161140.l	ENSGT00940000161140.k.b	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a.s	ENSGT00390000014753	ENSGT00940000161153	ENSGT00990000210496	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.b ##22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717.a #21	ENSGT00950000186462	ENSGT00390000005717.b.b #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879.p.a
Australian saltwater crocodile	MODERN SPECIES	27	DHRSX (ENSCPRG00005007135)	ZBED1 (ENSCPRG00005007116)	CD99 (ENSCPRG00005007084)	ENSCPRG00005007073	ENSCPRG00005007041	ENSCPRG00005007036	MXRA5 (ENSCPRG00005007032)	PRKX (ENSCPRG00005006991) #23	ENSCPRG00005006945	PUDP (ENSCPRG00005006902)	STS (ENSCPRG00005006868)	ENSCPRG00005006825	ENSCPRG00005006805	PNPLA4 (ENSCPRG00005006799)	ANOS1 (ENSCPRG00005006782)	ENSCPRG00005006735 ##22	GPR143 (ENSCPRG00005006712)	SHROOM2 (ENSCPRG00005006667)	ENSCPRG00005006663 #21	ENSCPRG00005006659 #21	WWC3 (ENSCPRG00005006617)	CLCN4 (ENSCPRG00005006604)	MID1 (ENSCPRG00005006575)	ARHGAP6 (ENSCPRG00005006453)	AMELX (ENSCPRG00005006432)	ENSCPRG00005006431	MSL3 (ENSCPRG00005006395)	FRMPD4 (ENSCPRG00005006360)	TLR7 (ENSCPRG00005006334)	ENSCPRG00005006332	ENSCPRG00005006327
Aves	ANCESTRAL SPECIES		ENSGT00940000161561	ENSGT00940000162345	ENSGT00940000163186	ENSGT00940000154344.b.i	ENSGT00940000161628	ENSGT00940000161140.k.a	ENSGT00940000161140.l	ENSGT00940000161140.k.b	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a.s	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.b ##22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717.a #21	ENSGT00950000186462	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00940000153904.a	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000154433.a.a	ENSGT00930000150973.A	ENSGT00940000162067
African ostrich	MODERN SPECIES	921											ENSSCUG00000016441	PUDP (ENSSCUG00000016434)	STS (ENSSCUG00000016422)	PNPLA4 (ENSSCUG00000016413)	ANOS1 (ENSSCUG00000016404)	ENSSCUG00000016397 ##22	GPR143 (ENSSCUG00000016384)	ENSSCUG00000016379	ENSSCUG00000016377	ENSSCUG00000016375	CLDN34 (ENSSCUG00000016373) #21	WWC3 (ENSSCUG00000016366)	CLCN4 (ENSSCUG00000016363)	ENSSCUG00000016357	MID1 (ENSSCUG00000016351)	ARHGAP6 (ENSSCUG00000016337)	ENSSCUG00000016329	MSL3 (ENSSCUG00000016324)	FRMPD4 (ENSSCUG00000016321)	PRPS2 (ENSSCUG00000016317)	TLR7 (ENSSCUG00000016311)
Neognathae	ANCESTRAL SPECIES	1	ENSGT00940000162345	ENSGT00940000163186	ENSGT00940000154344.b.i	ENSGT00940000154344.b.j	ENSGT00940000161628	ENSGT00940000161140.k.a	ENSGT00940000161140.l	ENSGT00940000161140.k.b	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a.s	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.b ##22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717.a #21	ENSGT00950000186462	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00940000153904.a	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000154433.a.a	ENSGT00930000150973.A	ENSGT00940000162067
Galloanserae	ANCESTRAL SPECIES	1	ENSGT00940000162345	ENSGT00940000163186	ENSGT00940000154344.b.i	ENSGT00940000154344.b.j	ENSGT00940000161628	ENSGT00940000161140.k.a	ENSGT00940000161140.l	ENSGT00940000161140.k.b	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a.s	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.b ##22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717.a #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00940000153904.a	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000154433.a.a	ENSGT00930000150973.A	ENSGT00940000162067	ENSGT00940000158619
Anatidae	ANCESTRAL SPECIES	58												ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.b ##22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717.a #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00940000153904.a	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000154433.a.a	ENSGT00930000150973.A	ENSGT00940000162067	ENSGT00940000158619
Pink-footed goose	MODERN SPECIES	42													STS (ENSABRG00000010925)	PNPLA4 (ENSABRG00000010908)	ANOS1 (ENSABRG00000010895)	ENSABRG00000010867 ##22	GPR143 (ENSABRG00000010864)	SHROOM2 (ENSABRG00000010861)	CLDN34 (ENSABRG00000010850) #21	WWC3 (ENSABRG00000010823)	CLCN4 (ENSABRG00000010813)	MID1 (ENSABRG00000010804)	ARHGAP6 (ENSABRG00000010748)	MSL3 (ENSABRG00000010722)	FRMPD4 (ENSABRG00000010702)	PRPS2 (ENSABRG00000010689)	TLR7 (ENSABRG00000010687)	EGFL6 (ENSABRG00000010639)	TCEANC (ENSABRG00000010630)	RAB9A (ENSABRG00000010621)	ENSABRG00000010595
Duck	MODERN SPECIES		TMEM123 (ENSAPLG00000005784)	ENSAPLG00000005387	YAP1 (ENSAPLG00000005062)	CFAP300 (ENSAPLG00000004970)	ENSAPLG00000004690	ANGPTL5 (ENSAPLG00000004584)	TRPC6 (ENSAPLG00000004017)	PGR (ENSAPLG00000003887)	ENSAPLG00000026964	ENSAPLG00000009880	PRKX (ENSAPLG00000007610) #23	MXRA5 (ENSAPLG00000007795)	ENSAPLG00000007832	ANOS1 (ENSAPLG00000004552)	ENSAPLG00000018495	ENSAPLG00000005235 ##22	GPR143 (ENSAPLG00000005661)	SHROOM2 (ENSAPLG00000029599)	CLDN34 (ENSAPLG00000000772) #21	WWC3 (ENSAPLG00000006132)	CLCN4 (ENSAPLG00000007108)	MID1 (ENSAPLG00000007693)	ARHGAP6 (ENSAPLG00000008489)	MSL3 (ENSAPLG00000009050)	FRMPD4 (ENSAPLG00000004467)	PRPS2 (ENSAPLG00000004141)	TLR7 (ENSAPLG00000004139)	ENSAPLG00000028225	EGFL6 (ENSAPLG00000012810)	TCEANC (ENSAPLG00000002370)	RAB9A (ENSAPLG00000002371)
Phasianidae	ANCESTRAL SPECIES		ENSGT00940000162345	ENSGT00940000163186	ENSGT00940000154344.b.i	ENSGT00940000154344.b.j	ENSGT00940000161628	ENSGT00940000161140.k.a	ENSGT00940000161140.l	ENSGT00940000161140.k.b	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a.s	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.b ##22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717.a #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00940000153904.a	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000154433.b	ENSGT00930000150973.A	ENSGT00940000162067	ENSGT00940000158619
Phasianidae_b	ANCESTRAL SPECIES		ENSGT00940000163186	ENSGT00940000154344.b.i	ENSGT00940000154344.b.j	ENSGT00940000161628	ENSGT00940000161140.k.a	ENSGT00940000161140.l	ENSGT00940000161140.k.b	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a.r.b	ENSGT00940000156607.a.a.s	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.b ##22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717.a #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00940000162865.d	ENSGT00940000153904.a	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000154433.b	ENSGT00930000150973.A	ENSGT00940000162067
Chicken	MODERN SPECIES		DHRSX (ENSGALG00010002360)	CD99 (ENSGALG00010002338)	ENSGALG00010002332	GYG2 (ENSGALG00010002293)	ENSGALG00010002271	ARSD (ENSGALG00010002254)	ARSH (ENSGALG00010002243)	MXRA5 (ENSGALG00010002235)	PRKX (ENSGALG00010001466) #23	NLGN4Y (ENSGALG00010001477)	ENSGALG00010002947	PUDP (ENSGALG00010001738)	STS (ENSGALG00010001728)	PNPLA4 (ENSGALG00010001713)	ANOS1 (ENSGALG00010001468)	TBL1X (ENSGALG00010001599) ##22	GPR143 (ENSGALG00010002210)	SHROOM2 (ENSGALG00010002194)	CLDN34 (ENSGALG00010002142) #21	WWC3 (ENSGALG00010002034)	CLCN4 (ENSGALG00010002023)	MID1 (ENSGALG00010002012)	ENSGALG00010001988	ENSGALG00010003266	ARHGAP6 (ENSGALG00010001966)	ENSGALG00010002951	MSL3 (ENSGALG00010001952)	FRMPD4 (ENSGALG00010001925)	PRPS2 (ENSGALG00010001901)	TLR7 (ENSGALG00010001897)	TMSB4X (ENSGALG00010002566)
Turkey	MODERN SPECIES		ENSMGAG00000020272	ENSMGAG00000014761	ENSMGAG00000015490	ENSMGAG00000014759	NIPA1 (ENSMGAG00000014763)	ENSMGAG00000022427	ENSMGAG00000014764	ENSMGAG00000022087	ENSMGAG00000020898	ENSMGAG00000002966	ENSMGAG00000014728	PUDP (ENSMGAG00000014727)	STS (ENSMGAG00000014600)	PNPLA4 (ENSMGAG00000014725)	ANOS1 (ENSMGAG00000014724)	ENSMGAG00000014722 ##22	GPR143 (ENSMGAG00000014721)	SHROOM2 (ENSMGAG00000014720)	CLDN34 (ENSMGAG00000015479) #21	WWC3 (ENSMGAG00000014718)	CLCN4 (ENSMGAG00000014717)	MID1 (ENSMGAG00000014715)	ENSMGAG00000022547	ARHGAP6 (ENSMGAG00000014711)	MSL3 (ENSMGAG00000014710)	FRMPD4 (ENSMGAG00000014709)	ENSMGAG00000014637	PRPS2 (ENSMGAG00000014707)	TLR7 (ENSMGAG00000014706)	EGFL6 (ENSMGAG00000014705)	TCEANC (ENSMGAG00000014704)
Japanese quail	DUPLICATION
Japanese quail	MODERN SPECIES		ASMT (ENSCJPG00005018249)	ENSCJPG00005018247	DHRSX (ENSCJPG00005018246)	CD99 (ENSCJPG00005018245)	GYG2 (ENSCJPG00005018243)	ENSCJPG00005018242	ENSCJPG00005018241	ENSCJPG00005018240	MXRA5 (ENSCJPG00005018239)	PRKX (ENSCJPG00005018237) #23	ENSCJPG00005018233	PUDP (ENSCJPG00005018231)	STS (ENSCJPG00005018230)	PNPLA4 (ENSCJPG00005018228)	ANOS1 (ENSCJPG00005018225)	ENSCJPG00005018221 ##22	GPR143 (ENSCJPG00005018220)	SHROOM2 (ENSCJPG00005018219)	CLDN34 (ENSCJPG00005018218) #21	WWC3 (ENSCJPG00005018216)	CLCN4 (ENSCJPG00005018215)	MID1 (ENSCJPG00005018214)	ARHGAP6 (ENSCJPG00005018211)	MSL3 (ENSCJPG00005018209)	FRMPD4 (ENSCJPG00005018208)	PRPS2 (ENSCJPG00005018207)	TLR7 (ENSCJPG00005018206)	ENSCJPG00005018205	EGFL6 (ENSCJPG00005018202)	TCEANC (ENSCJPG00005018201)	RAB9A (ENSCJPG00005018200)
Japanese quail	MODERN SPECIES	576																ENSCJPG00005006310 ##22
Neognathae_b	ANCESTRAL SPECIES		ENSGT00940000161561	ENSGT00940000162345	ENSGT00940000163186	ENSGT00940000154344.b.i	ENSGT00940000154344.b.j	ENSGT00940000161628	ENSGT00940000161140.k.a	ENSGT00940000161140.k.b	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a.s	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.b ##22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717.a #21	ENSGT00950000186462	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00940000153904.a	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000154433.a.a	ENSGT00930000150973.A	ENSGT00940000162067
Passeriformes	ANCESTRAL SPECIES	1	ENSGT00390000000917	ENSGT00980000198897	ENSGT00940000161024	ENSGT00960000190125	ENSGT00940000157234	ENSGT00940000157678	ENSGT00940000161407	ENSGT00940000158920	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a.s	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.b ##22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717.a #21	ENSGT00950000186462	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00940000153904.a	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000154433.a.a	ENSGT00930000150973.A	ENSGT00940000162067
Great tit	MODERN SPECIES		CARS2 (ENSPMJG00000011570)	NAXD (ENSPMJG00000011569)	RAB20 (ENSPMJG00000011566)	COL4A2 (ENSPMJG00000011565)	COL4A1 (ENSPMJG00000011564)	IRS2 (ENSPMJG00000011561)	MYO16 (ENSPMJG00000011557)	MXRA5 (ENSPMJG00000011555)	PRKX (ENSPMJG00000011553) #23	ENSPMJG00000011550	PUDP (ENSPMJG00000011549)	STS (ENSPMJG00000011548)	ENSPMJG00000011547	PNPLA4 (ENSPMJG00000011546)	ANOS1 (ENSPMJG00000011544)	ENSPMJG00000011541 ##22	GPR143 (ENSPMJG00000011540)	SHROOM2 (ENSPMJG00000011538)	CLDN34 (ENSPMJG00000011537) #21	WWC3 (ENSPMJG00000011536)	CLCN4 (ENSPMJG00000011535)	MID1 (ENSPMJG00000011534)	ARHGAP6 (ENSPMJG00000011533)	MSL3 (ENSPMJG00000011528)	FRMPD4 (ENSPMJG00000011518)	PRPS2 (ENSPMJG00000011517)	ENSPMJG00000011516	ENSPMJG00000011515	ENSPMJG00000011513	EGFL6 (ENSPMJG00000011509)	TCEANC (ENSPMJG00000011508)
Passeriformes_d	ANCESTRAL SPECIES	1	ENSGT00390000000917	ENSGT00980000198897	ENSGT00940000161024	ENSGT00960000190125	ENSGT00940000157234	ENSGT00940000157678	ENSGT00940000161407	ENSGT00940000158920	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a.s	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.b ##22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717.a #21	ENSGT00950000186462	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00940000153904.a	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000154433.a.a	ENSGT00930000150973.A	ENSGT00940000162067
Passeriformes_g	ANCESTRAL SPECIES	2	ENSGT00390000000917	ENSGT00980000198897	ENSGT00940000161024	ENSGT00960000190125	ENSGT00940000157234	ENSGT00940000157678	ENSGT00940000161407	ENSGT00940000158920	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a.s	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.b ##22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717.a #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00940000153904.a	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000154433.a.a	ENSGT00930000150973.A	ENSGT00940000162067	ENSGT00940000158619
Medium ground finch	MODERN SPECIES	85											ENSGFOG00000014680	PUDP (ENSGFOG00000014677)	STS (ENSGFOG00000014674)	PNPLA4 (ENSGFOG00000014672)	ANOS1 (ENSGFOG00000014663)	ENSGFOG00000014659 ##22	GPR143 (ENSGFOG00000014655)	SHROOM2 (ENSGFOG00000014653)	CLDN34 (ENSGFOG00000014651) #21	WWC3 (ENSGFOG00000014642)	CLCN4 (ENSGFOG00000014613)	MID1 (ENSGFOG00000014605)	ARHGAP6 (ENSGFOG00000014603)	MSL3 (ENSGFOG00000014599)
Passeroidea	ANCESTRAL SPECIES	10	ENSGT00390000006347.b	ENSGT00390000000917	ENSGT00980000198897	ENSGT00940000161024	ENSGT00940000157234	ENSGT00940000157678	ENSGT00940000161407	ENSGT00940000158920	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a.s	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.b ##22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717.a #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00940000153904.a	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000154433.a.a	ENSGT00930000150973.A	ENSGT00940000162067	ENSGT00940000158619
Zebra finch	MODERN SPECIES		CARS2 (ENSTGUG00000008828)	NAXD (ENSTGUG00000008803)	RAB20 (ENSTGUG00000008797)	COL4A2 (ENSTGUG00000008766)	COL4A1 (ENSTGUG00000008693)	IRS2 (ENSTGUG00000008688)	MYO16 (ENSTGUG00000008643)	MXRA5 (ENSTGUG00000008632)	PRKX (ENSTGUG00000008608) #23	ENSTGUG00000008580	PUDP (ENSTGUG00000008577)	STS (ENSTGUG00000008560)	ENSTGUG00000029117	PNPLA4 (ENSTGUG00000008554)	ANOS1 (ENSTGUG00000008536)	TBL1X (ENSTGUG00000008500) ##22	GPR143 (ENSTGUG00000008489)	SHROOM2 (ENSTGUG00000023073)	CLDN34 (ENSTGUG00000008463) #21	WWC3 (ENSTGUG00000008439)	CLCN4 (ENSTGUG00000008365)	MID1 (ENSTGUG00000008325)	ARHGAP6 (ENSTGUG00000008308)	MSL3 (ENSTGUG00000008286)	FRMPD4 (ENSTGUG00000008266)	PRPS2 (ENSTGUG00000008257)	TLR7 (ENSTGUG00000008250)	TMSB4X (ENSTGUG00000008243)	EGFL6 (ENSTGUG00000008230)	RAB9A (ENSTGUG00000024555)	TCEANC (ENSTGUG00000008228)
Common canary	MODERN SPECIES	11	LANCL3 (ENSSCAG00000011596)	PRRG1 (ENSSCAG00000011600) #32	ENSSCAG00000011616	ENSSCAG00000011627	ENSSCAG00000011633	TMEM47 (ENSSCAG00000011647) #36	DMD (ENSSCAG00000011693)	TAB3 (ENSSCAG00000011775)	ENSSCAG00000011983	TASL (ENSSCAG00000013056)	ENSSCAG00000013061	NR0B1 (ENSSCAG00000013062)	IL1RAPL1 (ENSSCAG00000013073)	PNPLA4 (ENSSCAG00000013086)	ANOS1 (ENSSCAG00000013103)	ENSSCAG00000013156 ##22	GPR143 (ENSSCAG00000013171)	SHROOM2 (ENSSCAG00000013185)	CLDN34 (ENSSCAG00000013195) #21	WWC3 (ENSSCAG00000013200)	CLCN4 (ENSSCAG00000013223)	MID1 (ENSSCAG00000013233)	ARHGAP6 (ENSSCAG00000013306)	MSL3 (ENSSCAG00000013374)	FRMPD4 (ENSSCAG00000013389)	PRPS2 (ENSSCAG00000013400)	ENSSCAG00000013404	ENSSCAG00000013408	ENSSCAG00000013413	EGFL6 (ENSSCAG00000013426)	TCEANC (ENSSCAG00000013443)
Flycatcher	DUPLICATION
Flycatcher	MODERN SPECIES		RAB20 (ENSFALG00000027339)	ENSFALG00000025079	COL4A2 (ENSFALG00000010548)	COL4A1 (ENSFALG00000010556)	IRS2 (ENSFALG00000003175)	MYO16 (ENSFALG00000004599)	MXRA5 (ENSFALG00000004590)	PRKX (ENSFALG00000026899) #23	ENSFALG00000004580	ENSFALG00000025206	PUDP (ENSFALG00000004576)	STS (ENSFALG00000004572)	PNPLA4 (ENSFALG00000023274)	ANOS1 (ENSFALG00000004551)	ENSFALG00000025607 ##22	ENSFALG00000025326 ##22	GPR143 (ENSFALG00000004518)	ENSFALG00000023002	ENSFALG00000027824	CLDN34 (ENSFALG00000015201) #21	ENSFALG00000027170	WWC3 (ENSFALG00000004511)	CLCN4 (ENSFALG00000004506)	MID1 (ENSFALG00000004503)	ARHGAP6 (ENSFALG00000004494)	MSL3 (ENSFALG00000004487)	FRMPD4 (ENSFALG00000004479)	PRPS2 (ENSFALG00000027955)	ENSFALG00000027246	ENSFALG00000025537	ENSFALG00000004472
Flycatcher	MODERN SPECIES		NAXD (ENSFALG00000004401)	RAB20 (ENSFALG00000027339)	ENSFALG00000025079	COL4A2 (ENSFALG00000010548)	COL4A1 (ENSFALG00000010556)	IRS2 (ENSFALG00000003175)	MYO16 (ENSFALG00000004599)	MXRA5 (ENSFALG00000004590)	PRKX (ENSFALG00000026899) #23	ENSFALG00000004580	ENSFALG00000025206	PUDP (ENSFALG00000004576)	STS (ENSFALG00000004572)	PNPLA4 (ENSFALG00000023274)	ANOS1 (ENSFALG00000004551)	ENSFALG00000025607 ##22	ENSFALG00000025326 ##22	GPR143 (ENSFALG00000004518)	ENSFALG00000023002	ENSFALG00000027824	CLDN34 (ENSFALG00000015201) #21	ENSFALG00000027170	WWC3 (ENSFALG00000004511)	CLCN4 (ENSFALG00000004506)	MID1 (ENSFALG00000004503)	ARHGAP6 (ENSFALG00000004494)	MSL3 (ENSFALG00000004487)	FRMPD4 (ENSFALG00000004479)	PRPS2 (ENSFALG00000027955)	ENSFALG00000027246	ENSFALG00000025537
Neognathae_c	ANCESTRAL SPECIES	4	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000162345	ENSGT00940000154344.b.i	ENSGT00940000161628	ENSGT00940000161140.k.a	ENSGT00940000161140.l	ENSGT00940000161140.k.b	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a.s	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.b ##22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717.a #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00940000153904.a	ENSGT00990000210213	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000154433.a.a	ENSGT00930000150973.A	ENSGT00940000162067
Kakapo	MODERN SPECIES	11	P2RY8 (ENSSHBG00005010447)	AKAP17A (ENSSHBG00005010437)	ASMT (ENSSHBG00005010423)	DHRSX (ENSSHBG00005010405)	CD99 (ENSSHBG00005010372)	GYG2 (ENSSHBG00005010350)	ENSSHBG00005010007	ENSSHBG00005009893	MXRA5 (ENSSHBG00005009874)	PRKX (ENSSHBG00005009858) #23	ENSSHBG00005009833	PUDP (ENSSHBG00005009815)	STS (ENSSHBG00005009792)	PNPLA4 (ENSSHBG00005009766)	ANOS1 (ENSSHBG00005019309)	ENSSHBG00005019306 ##22	GPR143 (ENSSHBG00005019300)	ENSSHBG00005019298	CLDN34 (ENSSHBG00005019296) #21	WWC3 (ENSSHBG00005019248)	CLCN4 (ENSSHBG00005019218)	MID1 (ENSSHBG00005019214)	ENSSHBG00005019213	ARHGAP6 (ENSSHBG00005019202)	MSL3 (ENSSHBG00005019198)	FRMPD4 (ENSSHBG00005019190)	PRPS2 (ENSSHBG00005019188)	TLR7 (ENSSHBG00005019186)	ENSSHBG00005019183	EGFL6 (ENSSHBG00005019178)	TCEANC (ENSSHBG00005019177)
Golden eagle	MODERN SPECIES	15	P2RY8 (ENSACCG00020008558)	AKAP17A (ENSACCG00020008575)	ASMT (ENSACCG00020008586)	DHRSX (ENSACCG00020008602)	ENSACCG00020008638	GYG2 (ENSACCG00020008675)	ENSACCG00020008717	ENSACCG00020008759	MXRA5 (ENSACCG00020008787)	PRKX (ENSACCG00020008807) #23	ENSACCG00020008832	PUDP (ENSACCG00020008849)	STS (ENSACCG00020008868)	PNPLA4 (ENSACCG00020008897)	ANOS1 (ENSACCG00020008921)	ENSACCG00020008942 ##22	GPR143 (ENSACCG00020008970)	SHROOM2 (ENSACCG00020008993)	CLDN34 (ENSACCG00020009012) #21	WWC3 (ENSACCG00020009068)	CLCN4 (ENSACCG00020009121)	MID1 (ENSACCG00020009153)	ARHGAP6 (ENSACCG00020009191)	ENSACCG00020009207	MSL3 (ENSACCG00020009233)	FRMPD4 (ENSACCG00020009315)	PRPS2 (ENSACCG00020009397)	TLR7 (ENSACCG00020009415)	ENSACCG00020009425	EGFL6 (ENSACCG00020009433)	TCEANC (ENSACCG00020009452)
Lepidosauria	ANCESTRAL SPECIES	4	ENSGT00440000039314.a	ENSGT00940000161561	ENSGT00940000162345	ENSGT00940000154344.b.i	ENSGT00940000161628	ENSGT00940000161140.k.a	ENSGT00940000161140.l	ENSGT00940000161140.k.b	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753.q	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.b ##22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717.a #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000154433.a.a	ENSGT00930000150973.A	ENSGT00940000162067
Episquamata	ANCESTRAL SPECIES	2	ENSGT00440000039314.a	ENSGT00940000161561.i	ENSGT00940000162345	ENSGT00940000154344.b.i	ENSGT00940000161628	ENSGT00940000161140.k.a	ENSGT00940000161140.l	ENSGT00940000161140.k.b	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753.q	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.b ##22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717.a #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000154433.a.a	ENSGT00930000150973.A	ENSGT00940000162067
Laterata	ANCESTRAL SPECIES		ENSGT01050000244840.B	ENSGT00440000039314.a	ENSGT00940000161561.i	ENSGT00940000162345	ENSGT00940000154344.b.i	ENSGT00940000161628	ENSGT00940000161140.k.a	ENSGT00940000161140.l	ENSGT00940000161140.k.b	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753.q	ENSGT00940000161153	ENSGT00440000033720.a	ENSGT00940000153421.b ##22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717.a #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00940000153904.a	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000154433.b	ENSGT00930000150973.A	ENSGT00940000162067	ENSGT00940000158619
Argentine black and white tegu	MODERN SPECIES		AKAP17A (ENSSMRG00000022440)	ENSSMRG00000022442	DHRSX (ENSSMRG00000022457)	CD99 (ENSSMRG00000022463)	GYG2 (ENSSMRG00000022466)	ENSSMRG00000022467	ENSSMRG00000022491	ENSSMRG00000022492	MXRA5 (ENSSMRG00000022494)	PRKX (ENSSMRG00000022495) #23	ENSSMRG00000022499	PUDP (ENSSMRG00000022502)	STS (ENSSMRG00000022503)	ENSSMRG00000022504	ANOS1 (ENSSMRG00000022505)	ENSSMRG00000022506 ##22	GPR143 (ENSSMRG00000022507)	ENSSMRG00000022508	ENSSMRG00000022510	ENSSMRG00000022511 #21	WWC3 (ENSSMRG00000022512)	CLCN4 (ENSSMRG00000022513)	MID1 (ENSSMRG00000022514)	ARHGAP6 (ENSSMRG00000022515)	ENSSMRG00000022569	ENSSMRG00000022570	MSL3 (ENSSMRG00000022571)	FRMPD4 (ENSSMRG00000022572)	PRPS2 (ENSSMRG00000022573)	TLR7 (ENSSMRG00000022575)	ENSSMRG00000022576
Common wall lizard	MODERN SPECIES	12	ENSPMRG00000007870	ZBED1 (ENSPMRG00000007864)	ENSPMRG00000007861	GYG2 (ENSPMRG00000007854)	ENSPMRG00000007852	ENSPMRG00000007845	ENSPMRG00000007834	MXRA5 (ENSPMRG00000007829)	PRKX (ENSPMRG00000007821) #23	ENSPMRG00000007813	ENSPMRG00000007805	PUDP (ENSPMRG00000007801)	STS (ENSPMRG00000007720)	ENSPMRG00000007686	ANOS1 (ENSPMRG00000007671)	ENSPMRG00000007661 ##22	GPR143 (ENSPMRG00000007648)	SHROOM2 (ENSPMRG00000007638)	ENSPMRG00000007629 #21	ENSPMRG00000007625	ENSPMRG00000007620	ENSPMRG00000007611	CLCN4 (ENSPMRG00000007590)	MID1 (ENSPMRG00000007562)	ENSPMRG00000007547	ARHGAP6 (ENSPMRG00000007537)	MSL3 (ENSPMRG00000007507)	FRMPD4 (ENSPMRG00000007467)	PRPS2 (ENSPMRG00000007440)	TLR7 (ENSPMRG00000007429)	ENSPMRG00000007409
Toxicofera	ANCESTRAL SPECIES	2	ENSGT01050000244840.B	ENSGT00440000039314.a	ENSGT00940000161561.i	ENSGT00940000162345	ENSGT00940000161628	ENSGT00940000161140.k.a	ENSGT00940000161140.l	ENSGT00940000161140.k.b	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753.q	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.b ##22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717.a #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000154433.a.a	ENSGT00930000150973.A	ENSGT00940000162067
Elapidae	ANCESTRAL SPECIES	13	ENSGT01050000244840.B	ENSGT00440000039314.a	ENSGT00940000161561.i	ENSGT00940000162345	ENSGT00940000161628	ENSGT00940000161140.k.a	ENSGT00940000161140.l	ENSGT00940000161140.k.b	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753.q	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.b ##22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717.a #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000154433.a.a	ENSGT00930000150973.A	ENSGT00940000162067
Elapidae_a	ANCESTRAL SPECIES	16	ENSGT01050000244840.B	ENSGT00440000039314.a	ENSGT00940000161561.i	ENSGT00940000162345	ENSGT00940000161628	ENSGT00940000161140.k.a	ENSGT00940000161140.l	ENSGT00940000161140.k.b	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753.q	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.b ##22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717.a #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000154433.a.a	ENSGT00930000150973.A	ENSGT00940000162067
Blue-lipped sea krait	MODERN SPECIES	1891																ENSLLTG00000007032 ##22
Acanthophiinae	ANCESTRAL SPECIES	21	ENSGT01050000244840.B	ENSGT00440000039314.a	ENSGT00940000161561.i	ENSGT00940000162345	ENSGT00940000161628	ENSGT00940000161140.k.a	ENSGT00940000161140.l	ENSGT00940000161140.k.b	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753.q	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.b ##22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00390000005717.a #21	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000154433.a.a	ENSGT00930000150973.A	ENSGT00940000162067
Eastern brown snake	MODERN SPECIES	35	ENSPTXG00000001125	AKAP17A (ENSPTXG00000001120)	ENSPTXG00000001078	DHRSX (ENSPTXG00000001065)	GYG2 (ENSPTXG00000001059)	ENSPTXG00000001000	ENSPTXG00000000985	ENSPTXG00000000975	MXRA5 (ENSPTXG00000000973)	PRKX (ENSPTXG00000000969) #23	ENSPTXG00000000596	PUDP (ENSPTXG00000000568)	STS (ENSPTXG00000000559)	PNPLA4 (ENSPTXG00000000286)	ANOS1 (ENSPTXG00000000125)	ENSPTXG00000002269 ##22	GPR143 (ENSPTXG00000002268)
Mainland tiger snake	MODERN SPECIES	17	DHRSX (ENSNSUG00000007344)	ENSNSUG00000007347	GYG2 (ENSNSUG00000007348)	ENSNSUG00000007358	ENSNSUG00000007491	ENSNSUG00000007492	MXRA5 (ENSNSUG00000007866)	ENSNSUG00000007867	PRKX (ENSNSUG00000007872) #23	ENSNSUG00000007879	ENSNSUG00000007900	PUDP (ENSNSUG00000007901)	STS (ENSNSUG00000007902)	PNPLA4 (ENSNSUG00000007906)	ANOS1 (ENSNSUG00000007908)	ENSNSUG00000007915 ##22	GPR143 (ENSNSUG00000007931)	ENSNSUG00000007932	ENSNSUG00000007933	ENSNSUG00000007934	CLCN4 (ENSNSUG00000007936)	MID1 (ENSNSUG00000007937)	ARHGAP6 (ENSNSUG00000007955)	AMELX (ENSNSUG00000007956)	MSL3 (ENSNSUG00000007959)	FRMPD4 (ENSNSUG00000008194)	PRPS2 (ENSNSUG00000008195)	TLR7 (ENSNSUG00000008197)	ENSNSUG00000008199	EGFL6 (ENSNSUG00000008203)	TCEANC (ENSNSUG00000008225)
Indian cobra	MODERN SPECIES	5	ENSNNAG00000012788	DHRSX (ENSNNAG00000012765)	ENSNNAG00000012755	GYG2 (ENSNNAG00000012697)	ENSNNAG00000012645	ENSNNAG00000011708	ENSNNAG00000010858	MXRA5 (ENSNNAG00000010731)	PRKX (ENSNNAG00000010413) #23	ENSNNAG00000010361	ENSNNAG00000010088	PUDP (ENSNNAG00000010056)	STS (ENSNNAG00000009596)	PNPLA4 (ENSNNAG00000009494)	ANOS1 (ENSNNAG00000009382)	ENSNNAG00000009334 ##22	GPR143 (ENSNNAG00000009280)	ENSNNAG00000009268	ENSNNAG00000009248	ENSNNAG00000008986	CLCN4 (ENSNNAG00000008816)	MID1 (ENSNNAG00000008763)	ARHGAP6 (ENSNNAG00000008440)	MSL3 (ENSNNAG00000008386)	FRMPD4 (ENSNNAG00000007829)	PRPS2 (ENSNNAG00000007750)	TLR7 (ENSNNAG00000007658)	ENSNNAG00000007638	TCEANC (ENSNNAG00000007623)	RAB9A (ENSNNAG00000007614)	ENSNNAG00000007601
Lizard	MODERN SPECIES	2	ENSACAG00000036949	ENSACAG00000041301	ENSACAG00000035599	ENSACAG00000026674	ENSACAG00000038467	ENSACAG00000035355	ENSACAG00000037875	nlgn4x (ENSACAG00000004520)	PUDP (ENSACAG00000004616)	STS (ENSACAG00000000390)	ENSACAG00000041234	ENSACAG00000037482	PNPLA4 (ENSACAG00000000415)	ENSACAG00000041133	ANOS1 (ENSACAG00000000439)	ENSACAG00000000539 ##22	ENSACAG00000044898	GPR143 (ENSACAG00000000735)	ENSACAG00000022069 #21	ENSACAG00000041439	ENSACAG00000000777	ENSACAG00000000827 #21	WWC3 (ENSACAG00000000828)	CLCN4 (ENSACAG00000039729)	MID1 (ENSACAG00000001219)	ENSACAG00000039931	ENSACAG00000037783	ARHGAP6 (ENSACAG00000001367)	ENSACAG00000043273	MSL3 (ENSACAG00000001416)	FRMPD4 (ENSACAG00000001515)
tuatara	DUPLICATION
tuatara	DUPLICATION
tuatara	MODERN SPECIES	111														ANOS1 (ENSSPUG00000002779)	ENSSPUG00000002852 ##22	ENSSPUG00000002863 ##22	GPR143 (ENSSPUG00000002888)	ENSSPUG00000002967	ENSSPUG00000002991	ENSSPUG00000002996	WWC3 (ENSSPUG00000003022)	CLCN4 (ENSSPUG00000003077)	MID1 (ENSSPUG00000003095)	ARHGAP6 (ENSSPUG00000003145)	ENSSPUG00000003193	ENSSPUG00000003224	ENSSPUG00000003235	FRMPD4 (ENSSPUG00000003245)	PRPS2 (ENSSPUG00000003294)	ENSSPUG00000003320	ENSSPUG00000003349
tuatara	MODERN SPECIES	111															ANOS1 (ENSSPUG00000002779)	ENSSPUG00000002852 ##22	ENSSPUG00000002863 ##22	GPR143 (ENSSPUG00000002888)	ENSSPUG00000002967	ENSSPUG00000002991	ENSSPUG00000002996	WWC3 (ENSSPUG00000003022)	CLCN4 (ENSSPUG00000003077)	MID1 (ENSSPUG00000003095)	ARHGAP6 (ENSSPUG00000003145)	ENSSPUG00000003193	ENSSPUG00000003224	ENSSPUG00000003235	FRMPD4 (ENSSPUG00000003245)	PRPS2 (ENSSPUG00000003294)	ENSSPUG00000003320
tuatara	MODERN SPECIES	897																ENSSPUG00000014133 ##22
Mammalia	ANCESTRAL SPECIES																	ENSGT00940000153421.b ##22
Theria	ANCESTRAL SPECIES																	ENSGT00940000153421.b ##22
Marsupialia	ANCESTRAL SPECIES																	ENSGT00940000153421.b ##22
Marsupialia_b	ANCESTRAL SPECIES	7	ENSGT00940000162345	ENSGT00940000154344.b	ENSGT00510000049811	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000163319	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.b ##22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00390000009151	ENSGT00940000153904.a	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879	ENSGT00940000154433.b	ENSGT00930000150973.A
Diprotodontia	ANCESTRAL SPECIES	32	ENSGT00940000161561	ENSGT00940000163186	ENSGT00940000154344.b	ENSGT00510000049811	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.b ##22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879	ENSGT00940000154433.b	ENSGT00930000150973.A
Diprotodontia_a	ANCESTRAL SPECIES	31	ENSGT00940000161561	ENSGT00940000163186	ENSGT00940000154344.b	ENSGT00510000049811	ENSGT00940000161628	ENSGT00940000161140	ENSGT00940000162925	ENSGT00940000163432	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.b ##22	ENSGT00390000016722	ENSGT00940000155212	ENSGT00410000025556.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00390000009151	ENSGT00950000182965.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879	ENSGT00940000154433.b	ENSGT00930000150973.A
koala	MODERN SPECIES	112									ENSPCIG00000022235	ENSPCIG00000022246	ENSPCIG00000022248	PUDP (ENSPCIG00000035975)	STS (ENSPCIG00000000832)	PNPLA4 (ENSPCIG00000000864)	ANOS1 (ENSPCIG00000019662)	ENSPCIG00000006373 ##22	GPR143 (ENSPCIG00000006369)	SHROOM2 (ENSPCIG00000006363)	ENSPCIG00000031018	WWC3 (ENSPCIG00000006354)	CLCN4 (ENSPCIG00000006349)	MID1 (ENSPCIG00000006342)	HCCS (ENSPCIG00000003040)	ARHGAP6 (ENSPCIG00000003101)	AMELX (ENSPCIG00000033739)
Common wonbat	MODERN SPECIES	1050													PNPLA4 (ENSVURG00010022320)	ANOS1 (ENSVURG00010022326)	ENSVURG00010022330	ENSVURG00010022335 ##22	GPR143 (ENSVURG00010022341)	SHROOM2 (ENSVURG00010022349)	WWC3 (ENSVURG00010022359)	CLCN4 (ENSVURG00010022366)	ENSVURG00010022370	ENSVURG00010022372	HCCS (ENSVURG00010022374)	ARHGAP6 (ENSVURG00010022377)	AMELX (ENSVURG00010022379)	ENSVURG00010022380	MSL3 (ENSVURG00010022381)	FRMPD4 (ENSVURG00010022385)	PRPS2 (ENSVURG00010022389)	TLR7 (ENSVURG00010022393)	TLR8 (ENSVURG00010022395)
Wallaby	MODERN SPECIES	697																ENSMEUG00000012794 ##22
Tasmanian devil	MODERN SPECIES	2	GYG2 (ENSSHAG00000009716)	ARSD (ENSSHAG00000009046)	ARSL (ENSSHAG00000008728)	ARSH (ENSSHAG00000008305)	ARSF (ENSSHAG00000007607)	MXRA5 (ENSSHAG00000002720)	PRKX (ENSSHAG00000007958) #23	ENSSHAG00000024908	ENSSHAG00000028149	ENSSHAG00000004877	PUDP (ENSSHAG00000010316)	STS (ENSSHAG00000008889)	PNPLA4 (ENSSHAG00000011853)	ENSSHAG00000024009	ANOS1 (ENSSHAG00000018835)	ENSSHAG00000017481 ##22	ENSSHAG00000017369	SHROOM2 (ENSSHAG00000016915)	ENSSHAG00000016765 #21	ENSSHAG00000029993	WWC3 (ENSSHAG00000016061)	CLCN4 (ENSSHAG00000015714)	MID1 (ENSSHAG00000014062)	ENSSHAG00000022080	AMELX (ENSSHAG00000009398)	ARHGAP6 (ENSSHAG00000009839)	MSL3 (ENSSHAG00000013243)	FRMPD4 (ENSSHAG00000000651)	PRPS2 (ENSSHAG00000022024)	TLR7 (ENSSHAG00000020704)	TLR8 (ENSSHAG00000013998)
Platypus	MODERN SPECIES	6	PHKA2 (ENSOANG00000004031)	ENSOANG00000038719	PPEF1 (ENSOANG00000004036)	RS1 (ENSOANG00000005828)	CDKL5 (ENSOANG00000004037)	ARSD (ENSOANG00000004038)	ENSOANG00000004040	ENSOANG00000004042	ARSF (ENSOANG00000004043)	ENSOANG00000004044	PRKX (ENSOANG00000004046) #23	ENSOANG00000004047	PUDP (ENSOANG00000004048)	STS (ENSOANG00000050575)	ANOS1 (ENSOANG00000009692)	ENSOANG00000009691 ##22	GPR143 (ENSOANG00000009690)	SHROOM2 (ENSOANG00000037658)	WWC3 (ENSOANG00000002633)	CLCN4 (ENSOANG00000002630)	MID1 (ENSOANG00000002628)	ARHGAP6 (ENSOANG00000002625)	AMELX (ENSOANG00000037501)	MSL3 (ENSOANG00000002623)	FRMPD4 (ENSOANG00000002619)	PRPS2 (ENSOANG00000002617)	TLR7 (ENSOANG00000002612)	TLR8 (ENSOANG00000015882)	TMSB4X (ENSOANG00000039936)	EGFL6 (ENSOANG00000002610)	TCEANC (ENSOANG00000015881)
Anura	ANCESTRAL SPECIES	91	ENSGT00940000162345	ENSGT00940000163186	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000161140.hb	ENSGT00940000161140.gb	ENSGT00940000159942.a	ENSGT00940000159832 #23	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT01030000234513.B.a	ENSGT01100000265889	ENSGT00940000153421.b ##22	ENSGT00390000016722	ENSGT00440000037505.b	ENSGT00940000159580	ENSGT00940000164309	ENSGT00940000159334	ENSGT00940000153609.a	ENSGT00940000154651	ENSGT00390000000155.a.b	ENSGT00390000006492	ENSGT00940000159565	ENSGT00940000159625	ENSGT00940000158195	ENSGT00940000153222.a.b.b.b.b	ENSGT00510000047611
Frog	MODERN SPECIES	2	capza1 (ENSXETG00000025061)	st7l (ENSXETG00000006902)	ENSXETG00000044757	wnt2b (ENSXETG00000006908)	ENSXETG00000045727	cttnbp2nl (ENSXETG00000006909)	ENSXETG00000047250	kcnd3 (ENSXETG00000013577)	ddx20 (ENSXETG00000013568)	inka2 (ENSXETG00000013567)	ENSXETG00000042318	rap1a (ENSXETG00000013562)	adora3.3 (ENSXETG00000013556)	adora3.2 (ENSXETG00000025809)	adora3.1 (ENSXETG00000031634)	tbl1x (ENSXETG00000015786) ##22	gpr143 (ENSXETG00000015784)	ENSXETG00000045111	shroom2 (ENSXETG00000031194)	cldn34 (ENSXETG00000045562) #21	ENSXETG00000012563	wwc3 (ENSXETG00000015746)	ENSXETG00000044045	clcn4 (ENSXETG00000015727)	mid1 (ENSXETG00000015715)	dynlt3 (ENSXETG00000041328)	sytl5 (ENSXETG00000008597)	srpx (ENSXETG00000008596)	RPGR (ENSXETG00000047992)	otc (ENSXETG00000008592)	ENSXETG00000045064
Leishan spiny toad	MODERN SPECIES	5	ENSLLEG00000004223	ENSLLEG00000004226	ENSLLEG00000004230	ENSLLEG00000004232	ENSLLEG00000004235	PUDP (ENSLLEG00000004242)	ENSLLEG00000004245	STS (ENSLLEG00000004248)	ENSLLEG00000000248	ENSLLEG00000000257	ENSLLEG00000000263	ENSLLEG00000000279	PNPLA4 (ENSLLEG00000000298)	ENSLLEG00000000314	ANOS1 (ENSLLEG00000000341)	ENSLLEG00000000368 ##22	GPR143 (ENSLLEG00000000400)	GPR161 (ENSLLEG00000000457)	ENSLLEG00000000464	DPT (ENSLLEG00000000472)	ENSLLEG00000000487	ENSLLEG00000000495	ATP1B1 (ENSLLEG00000000513)	NME7 (ENSLLEG00000000587)	BLZF1 (ENSLLEG00000000841)	CCDC181 (ENSLLEG00000000896)	SLC19A2 (ENSLLEG00000000946)	F5 (ENSLLEG00000001022)	ATG3 (ENSLLEG00000001200)	SLC35A5 (ENSLLEG00000001280)	ENSLLEG00000001312
Coelacanth	MODERN SPECIES	817																ENSLACG00000010244 ##22	GPR143 (ENSLACG00000012860)	SHROOM2 (ENSLACG00000014639)