Gnathostomata	ANCESTRAL SPECIES	712													ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000164480	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23
Euteleostomi	ANCESTRAL SPECIES	95	ENSGT00940000156336	ENSGT00940000158856	ENSGT00940000157498	ENSGT00940000157300	ENSGT00940000154334	ENSGT00940000162718	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT01030000235556	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000164480	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23
Sarcopterygii	ANCESTRAL SPECIES	45														ENSGT00390000013817	ENSGT00940000158283	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT01030000235556	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000155177.a	ENSGT00940000155177.b	ENSGT00940000162718	ENSGT00940000164746	ENSGT00940000154334	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856
Tetrapoda	ANCESTRAL SPECIES	175														ENSGT00390000013817	ENSGT00940000158283	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000164480	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT01030000234540.E	ENSGT00940000162718	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000158367	ENSGT01020000230623
Amniota	ANCESTRAL SPECIES	54												ENSGT00530000063627.b	ENSGT00940000162632	ENSGT00390000013817	ENSGT00940000158283	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT01030000235556	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000161722	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00940000164584	ENSGT00390000002329
Mammalia	ANCESTRAL SPECIES	69	ENSGT00390000004601	ENSGT00390000007133	ENSGT00940000157784	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329	ENSGT00390000002563.b.a.b	ENSGT00940000159279	ENSGT00530000063627.b	ENSGT00940000162632	ENSGT00390000013817	ENSGT00940000158283	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000164746	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856
Theria	ANCESTRAL SPECIES	3	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT00960000186961	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498
Eutheria	ANCESTRAL SPECIES		ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856
Primates	ANCESTRAL SPECIES	4	ENSGT00940000158175 #8	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856
Lemuriformes	ANCESTRAL SPECIES		ENSGT00940000158175 #8	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856
Lemuriformes_a	ANCESTRAL SPECIES	31	ENSGT00940000158175 #8	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856
Coquerels sifaka	MODERN SPECIES	312	AP4B1 (ENSPCOG00000020213) #7	DCLRE1B (ENSPCOG00000022622) #8	HIPK1 (ENSPCOG00000026639) #9	OLFML3 (ENSPCOG00000012805) #10	SYT6 (ENSPCOG00000012717) #11	TRIM33 (ENSPCOG00000026842) #12	ENSPCOG00000021780 #13	DENND2C (ENSPCOG00000025514) #14	AMPD1 (ENSPCOG00000013660) #15	ENSPCOG00000026900 #16	NRAS (ENSPCOG00000013517) #17	CSDE1 (ENSPCOG00000017893) #18	SYCP1 (ENSPCOG00000016225) #19	TSHB (ENSPCOG00000021335) #20	TSPAN2 (ENSPCOG00000021672) #21	VANGL1 (ENSPCOG00000014900) #22	CASQ2 (ENSPCOG00000004312) #23
Greater bamboo lemur	MODERN SPECIES	511	HIPK1 (ENSPSMG00000013546) #9	OLFML3 (ENSPSMG00000013692) #10	SYT6 (ENSPSMG00000013735) #11	TRIM33 (ENSPSMG00000013846) #12	ENSPSMG00000013946	BCAS2 (ENSPSMG00000013954) #16	DENND2C (ENSPSMG00000013999) #14	AMPD1 (ENSPSMG00000014033) #15	NRAS (ENSPSMG00000014097) #17	CSDE1 (ENSPSMG00000014304) #18	SIKE1 (ENSPSMG00000014489)	SYCP1 (ENSPSMG00000014676) #19	TSHB (ENSPSMG00000014734) #20	TSPAN2 (ENSPSMG00000014758) #21	NGF (ENSPSMG00000014770)	VANGL1 (ENSPSMG00000014794) #22	CASQ2 (ENSPSMG00000014811) #23	NHLH2 (ENSPSMG00000014821)	SLC22A15 (ENSPSMG00000014868)	MAB21L3 (ENSPSMG00000014900)	ATP1A1 (ENSPSMG00000015000)	CD58 (ENSPSMG00000015016)	IGSF3 (ENSPSMG00000015029)	CD2 (ENSPSMG00000015045)	PTGFRN (ENSPSMG00000015068)	CD101 (ENSPSMG00000015090)	TTF2 (ENSPSMG00000015117)	TRIM45 (ENSPSMG00000015160)	VTCN1 (ENSPSMG00000015204)	MAN1A2 (ENSPSMG00000015225)	ENSPSMG00000015236
Mouse lemur	MODERN SPECIES	11	USP21 (ENSMICG00000007253)	ENSMICG00000007258	B4GALT3 (ENSMICG00000007266)	ADAMTS4 (ENSMICG00000034309)	NDUFS2 (ENSMICG00000007269)	FCER1G (ENSMICG00000007278)	ENSMICG00000035930	TOMM40L (ENSMICG00000007287)	NR1I3 (ENSMICG00000007296)	PCP4L1 (ENSMICG00000036221)	MPZ (ENSMICG00000007313)	SDHC (ENSMICG00000007317)	CFAP126 (ENSMICG00000045246)	ENSMICG00000014956	ENSMICG00000030823	VANGL1 (ENSMICG00000002838) #22	CASQ2 (ENSMICG00000002848) #23	NHLH2 (ENSMICG00000045301)	SLC22A15 (ENSMICG00000009801)	MAB21L3 (ENSMICG00000032799)	ATP1A1 (ENSMICG00000011083)	ENSMICG00000042187	CD58 (ENSMICG00000042112)	IGSF3 (ENSMICG00000016709)	CD2 (ENSMICG00000011899)	PTGFRN (ENSMICG00000009691)	CD101 (ENSMICG00000009704)	ENSMICG00000009715	TRIM45 (ENSMICG00000009751)	VTCN1 (ENSMICG00000009755)	ENSMICG00000009764
Bushbaby	MODERN SPECIES	188	ENSOGAG00000026228	TRIM33 (ENSOGAG00000009419) #12	ENSOGAG00000026611	BCAS2 (ENSOGAG00000007544) #16	DENND2C (ENSOGAG00000007545) #14	AMPD1 (ENSOGAG00000012124) #15	NRAS (ENSOGAG00000028680) #17	CSDE1 (ENSOGAG00000012127) #18	SIKE1 (ENSOGAG00000005952)	ENSOGAG00000026550	ENSOGAG00000030317	SYCP1 (ENSOGAG00000000392) #19	TSHB (ENSOGAG00000001448) #20	TSPAN2 (ENSOGAG00000011521) #21	NGF (ENSOGAG00000026573)	VANGL1 (ENSOGAG00000014403) #22	CASQ2 (ENSOGAG00000014407) #23	NHLH2 (ENSOGAG00000034540)	SLC22A15 (ENSOGAG00000002894)	MAB21L3 (ENSOGAG00000002896)	ATP1A1 (ENSOGAG00000000187)	ENSOGAG00000002250	IGSF3 (ENSOGAG00000017055)	CD2 (ENSOGAG00000031305)	PTGFRN (ENSOGAG00000005271)	CD101 (ENSOGAG00000005273)	TTF2 (ENSOGAG00000009039)	TRIM45 (ENSOGAG00000006634)	VTCN1 (ENSOGAG00000006636)	MAN1A2 (ENSOGAG00000003687)	ENSOGAG00000028154
Haplorrhini	ANCESTRAL SPECIES	1	ENSGT00940000158175 #8	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856
Tarsier	MODERN SPECIES	6824																VANGL1 (ENSTSYG00000003526) #22	CASQ2 (ENSTSYG00000006753) #23	SLC22A15 (ENSTSYG00000000493)	MAB21L3 (ENSTSYG00000001662)
Simiiformes	ANCESTRAL SPECIES	3	ENSGT00940000158175 #8	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000153362.b.g	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498
Catarrhini	ANCESTRAL SPECIES	3	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000008859.b.d.k.a.a	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00940000153362.b.g	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498
Hominoidea	ANCESTRAL SPECIES	3	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000008859.b.d.k.a.a	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000000080.a.a.j	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00940000153362.b.g	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498
Hominidae	ANCESTRAL SPECIES	3	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000008859.b.d.k.a.a	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000000080.a.a.j	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00940000153362.b.g	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	3	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000008859.b.d.k.a.a	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000000080.a.a.j	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00940000153362.b.g	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498
Homo/Pan group	ANCESTRAL SPECIES	4	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000008859.b.d.k.a.a	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000000080.a.a.j	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00940000153362.b.g	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498
Pan	ANCESTRAL SPECIES		ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000008859.b.d.k.a.a	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000000080.a.a.j	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00940000153362.b.g	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498
Chimpanzee	MODERN SPECIES		OLFML3 (ENSPTRG00000001131) #10	SYT6 (ENSPTRG00000001132) #11	TRIM33 (ENSPTRG00000001133) #12	ENSPTRG00000045834	BCAS2 (ENSPTRG00000001136) #16	DENND2C (ENSPTRG00000001137) #14	AMPD1 (ENSPTRG00000001139) #15	NRAS (ENSPTRG00000001140) #17	CSDE1 (ENSPTRG00000033721) #18	SIKE1 (ENSPTRG00000001142)	SYCP1 (ENSPTRG00000001143) #19	TSHB (ENSPTRG00000001144) #20	TSPAN2 (ENSPTRG00000001145) #21	ENSPTRG00000050090	ENSPTRG00000042869	VANGL1 (ENSPTRG00000001147) #22	CASQ2 (ENSPTRG00000001148) #23	NHLH2 (ENSPTRG00000044281)	SLC22A15 (ENSPTRG00000001150)	MAB21L3 (ENSPTRG00000001151)	ATP1A1 (ENSPTRG00000001152)	ENSPTRG00000050070	CD58 (ENSPTRG00000001153)	IGSF3 (ENSPTRG00000001154)	CD2 (ENSPTRG00000001157)	PTGFRN (ENSPTRG00000001158)	CD101 (ENSPTRG00000001160)	TTF2 (ENSPTRG00000001162)	TRIM45 (ENSPTRG00000001163)	VTCN1 (ENSPTRG00000001164)	MAN1A2 (ENSPTRG00000024134)
Bonobo	MODERN SPECIES		OLFML3 (ENSPPAG00000038025) #10	SYT6 (ENSPPAG00000033807) #11	TRIM33 (ENSPPAG00000036094) #12	ENSPPAG00000028319	BCAS2 (ENSPPAG00000030780) #16	DENND2C (ENSPPAG00000033748) #14	AMPD1 (ENSPPAG00000036239) #15	NRAS (ENSPPAG00000037915) #17	CSDE1 (ENSPPAG00000025861) #18	SIKE1 (ENSPPAG00000030969)	SYCP1 (ENSPPAG00000031200) #19	TSHB (ENSPPAG00000031428) #20	TSPAN2 (ENSPPAG00000028377) #21	ENSPPAG00000039894	ENSPPAG00000040918	VANGL1 (ENSPPAG00000037996) #22	CASQ2 (ENSPPAG00000028248) #23	NHLH2 (ENSPPAG00000022478)	SLC22A15 (ENSPPAG00000033451)	MAB21L3 (ENSPPAG00000037392)	ATP1A1 (ENSPPAG00000039938)	CD58 (ENSPPAG00000036763)	CD2 (ENSPPAG00000030761)	PTGFRN (ENSPPAG00000043179)	CD101 (ENSPPAG00000032745)	TTF2 (ENSPPAG00000027542)	TRIM45 (ENSPPAG00000027104)	VTCN1 (ENSPPAG00000023467)	MAN1A2 (ENSPPAG00000028925)	TENT5C (ENSPPAG00000023449)	GDAP2 (ENSPPAG00000028536)
Human	MODERN SPECIES		DCLRE1B (ENSG00000118655) #8	HIPK1 (ENSG00000163349) #9	OLFML3 (ENSG00000116774) #10	SYT6 (ENSG00000134207) #11	TRIM33 (ENSG00000197323) #12	BCAS2 (ENSG00000116752) #16	DENND2C (ENSG00000175984) #14	AMPD1 (ENSG00000116748) #15	NRAS (ENSG00000213281) #17	CSDE1 (ENSG00000009307) #18	SIKE1 (ENSG00000052723)	SYCP1 (ENSG00000198765) #19	TSHB (ENSG00000134200) #20	TSPAN2 (ENSG00000134198) #21	NGF (ENSG00000134259)	VANGL1 (ENSG00000173218) #22	CASQ2 (ENSG00000118729) #23	NHLH2 (ENSG00000177551)	SLC22A15 (ENSG00000163393)	MAB21L3 (ENSG00000173212)	ATP1A1 (ENSG00000163399)	CD58 (ENSG00000116815)	IGSF3 (ENSG00000143061)	CD2 (ENSG00000116824)	PTGFRN (ENSG00000134247)	CD101 (ENSG00000134256)	TTF2 (ENSG00000116830)	TRIM45 (ENSG00000134253)	VTCN1 (ENSG00000134258)	MAN1A2 (ENSG00000198162)	TENT5C (ENSG00000183508)
Gorilla	MODERN SPECIES		OLFML3 (ENSGGOG00000012453) #10	SYT6 (ENSGGOG00000014743) #11	TRIM33 (ENSGGOG00000016429) #12	ENSGGOG00000038664	ENSGGOG00000041218 #16	DENND2C (ENSGGOG00000008502) #14	AMPD1 (ENSGGOG00000013805) #15	NRAS (ENSGGOG00000043922) #17	CSDE1 (ENSGGOG00000002164) #18	SIKE1 (ENSGGOG00000015643)	SYCP1 (ENSGGOG00000015556) #19	TSHB (ENSGGOG00000010389) #20	TSPAN2 (ENSGGOG00000010083) #21	ENSGGOG00000040025	ENSGGOG00000037681	ENSGGOG00000026844 #22	CASQ2 (ENSGGOG00000017029) #23	NHLH2 (ENSGGOG00000043451)	SLC22A15 (ENSGGOG00000014585)	MAB21L3 (ENSGGOG00000002308)	ATP1A1 (ENSGGOG00000006738)	CD58 (ENSGGOG00000012864)	ENSGGOG00000027658	ENSGGOG00000022319	CD2 (ENSGGOG00000005260)	PTGFRN (ENSGGOG00000011825)	CD101 (ENSGGOG00000008209)	TTF2 (ENSGGOG00000015790)	TRIM45 (ENSGGOG00000014996)	VTCN1 (ENSGGOG00000025814)	MAN1A2 (ENSGGOG00000014278)
Orangutan	MODERN SPECIES		HIPK1 (ENSPPYG00000001004) #9	OLFML3 (ENSPPYG00000001003) #10	SYT6 (ENSPPYG00000001002) #11	TRIM33 (ENSPPYG00000001001) #12	ENSPPYG00000038637	BCAS2 (ENSPPYG00000001000) #16	DENND2C (ENSPPYG00000000999) #14	AMPD1 (ENSPPYG00000000998) #15	NRAS (ENSPPYG00000000997) #17	CSDE1 (ENSPPYG00000000996) #18	SIKE1 (ENSPPYG00000037081)	SYCP1 (ENSPPYG00000000994) #19	ENSPPYG00000000993 #20	TSPAN2 (ENSPPYG00000000992) #21	NGF (ENSPPYG00000000991)	VANGL1 (ENSPPYG00000000990) #22	CASQ2 (ENSPPYG00000000989) #23	NHLH2 (ENSPPYG00000000988)	SLC22A15 (ENSPPYG00000000987)	MAB21L3 (ENSPPYG00000000986)	ATP1A1 (ENSPPYG00000000985)	ENSPPYG00000000983	CD58 (ENSPPYG00000000982)	IGSF3 (ENSPPYG00000000981)	CD2 (ENSPPYG00000000979)	PTGFRN (ENSPPYG00000000978)	CD101 (ENSPPYG00000000977)	TTF2 (ENSPPYG00000000976)	TRIM45 (ENSPPYG00000000975)	VTCN1 (ENSPPYG00000000974)	ENSPPYG00000031903
Gibbon	MODERN SPECIES	2	OLFML3 (ENSNLEG00000004677) #10	SYT6 (ENSNLEG00000004694) #11	TRIM33 (ENSNLEG00000004699) #12	ENSNLEG00000027666	BCAS2 (ENSNLEG00000004737) #16	DENND2C (ENSNLEG00000004759) #14	AMPD1 (ENSNLEG00000004786) #15	NRAS (ENSNLEG00000034325) #17	CSDE1 (ENSNLEG00000004842) #18	SIKE1 (ENSNLEG00000004921)	SYCP1 (ENSNLEG00000004923) #19	TSHB (ENSNLEG00000004959) #20	TSPAN2 (ENSNLEG00000004961) #21	ENSNLEG00000035282	ENSNLEG00000030925	VANGL1 (ENSNLEG00000004984) #22	CASQ2 (ENSNLEG00000004999) #23	NHLH2 (ENSNLEG00000027793)	SLC22A15 (ENSNLEG00000005012)	MAB21L3 (ENSNLEG00000005038)	ATP1A1 (ENSNLEG00000005047)	CD58 (ENSNLEG00000032597)	IGSF3 (ENSNLEG00000005162)	CD2 (ENSNLEG00000005167)	PTGFRN (ENSNLEG00000005178)	CD101 (ENSNLEG00000005188)	TTF2 (ENSNLEG00000005209)	TRIM45 (ENSNLEG00000005248)	VTCN1 (ENSNLEG00000005256)	MAN1A2 (ENSNLEG00000005272)	TENT5C (ENSNLEG00000035910)
Cercopithecidae	ANCESTRAL SPECIES	2	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000008859.b.d.k.a.a	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00940000153362.b.g	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300.c	ENSGT00940000157498
Cercopithecinae	ANCESTRAL SPECIES		ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000008859.b.d.k.a.a	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00940000153362.b.g	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300.c	ENSGT00940000157498
Vervet Monkey	MODERN SPECIES	12	DCLRE1B (ENSCSAG00000001642) #8	HIPK1 (ENSCSAG00000001645) #9	OLFML3 (ENSCSAG00000001647) #10	SYT6 (ENSCSAG00000001648) #11	TRIM33 (ENSCSAG00000001649) #12	BCAS2 (ENSCSAG00000001652) #16	DENND2C (ENSCSAG00000001653) #14	AMPD1 (ENSCSAG00000001655) #15	NRAS (ENSCSAG00000001656) #17	CSDE1 (ENSCSAG00000001658) #18	SIKE1 (ENSCSAG00000001660)	SYCP1 (ENSCSAG00000001672) #19	TSHB (ENSCSAG00000001678) #20	TSPAN2 (ENSCSAG00000001681) #21	NGF (ENSCSAG00000000171)	VANGL1 (ENSCSAG00000001684) #22	CASQ2 (ENSCSAG00000001685) #23	NHLH2 (ENSCSAG00000000172)	SLC22A15 (ENSCSAG00000001686)	MAB21L3 (ENSCSAG00000001688)	ENSCSAG00000001690	ATP1A1 (ENSCSAG00000001691)	ENSCSAG00000001692	CD58 (ENSCSAG00000001694)	IGSF3 (ENSCSAG00000001695)	CD2 (ENSCSAG00000001696)	PTGFRN (ENSCSAG00000001697)	CD101 (ENSCSAG00000001698)	ENSCSAG00000001699	TRIM45 (ENSCSAG00000001700)	VTCN1 (ENSCSAG00000001701)
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000008859.b.d.k.a.a	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00940000153362.b.g	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300.c	ENSGT00940000157498
Macaca	ANCESTRAL SPECIES		ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000008859.b.d.k.a.a	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00940000153362.b.g	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300.c	ENSGT00940000157498
Pig-tailed macaque	MODERN SPECIES	556	HIPK1 (ENSMNEG00000040836) #9	OLFML3 (ENSMNEG00000028120) #10	SYT6 (ENSMNEG00000034665) #11	TRIM33 (ENSMNEG00000036143) #12	ENSMNEG00000031644	BCAS2 (ENSMNEG00000029335) #16	DENND2C (ENSMNEG00000035993) #14	AMPD1 (ENSMNEG00000040685) #15	NRAS (ENSMNEG00000044823) #17	CSDE1 (ENSMNEG00000045247) #18	SIKE1 (ENSMNEG00000013363)	SYCP1 (ENSMNEG00000036344) #19	TSHB (ENSMNEG00000041678) #20	TSPAN2 (ENSMNEG00000043519) #21	NGF (ENSMNEG00000037107)	VANGL1 (ENSMNEG00000030336) #22	CASQ2 (ENSMNEG00000028623) #23	NHLH2 (ENSMNEG00000006709)	SLC22A15 (ENSMNEG00000036847)	MAB21L3 (ENSMNEG00000044981)	ATP1A1 (ENSMNEG00000034326)	CD58 (ENSMNEG00000030019)	IGSF3 (ENSMNEG00000040709)	CD2 (ENSMNEG00000038892)	PTGFRN (ENSMNEG00000040097)	CD101 (ENSMNEG00000039661)	TTF2 (ENSMNEG00000042285)	TRIM45 (ENSMNEG00000035138)	ENSMNEG00000043941	MAN1A2 (ENSMNEG00000031399)	TENT5C (ENSMNEG00000016833)
Macaca_a	ANCESTRAL SPECIES		ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000008859.b.d.k.a.a	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT01100000263539.b.b.b.b.b.a.b.a.a.b.b.a.a	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00390000003682.ib.a.b.f.a.a.b.a.b.a.b.a.b	ENSGT00940000154840.b	ENSGT00940000153362.b.g	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k
Crab-eating macaque	MODERN SPECIES		OLFML3 (ENSMFAG00000041763) #10	SYT6 (ENSMFAG00000041208) #11	ENSMFAG00000057971	TRIM33 (ENSMFAG00000041350) #12	ENSMFAG00000040070	BCAS2 (ENSMFAG00000043933) #16	DENND2C (ENSMFAG00000035727) #14	AMPD1 (ENSMFAG00000038085) #15	NRAS (ENSMFAG00000036827) #17	CSDE1 (ENSMFAG00000003674) #18	SIKE1 (ENSMFAG00000059908)	SYCP1 (ENSMFAG00000043913) #19	TSHB (ENSMFAG00000000330) #20	TSPAN2 (ENSMFAG00000039698) #21	NGF (ENSMFAG00000060447)	VANGL1 (ENSMFAG00000000860) #22	CASQ2 (ENSMFAG00000042482) #23	ENSMFAG00000057471	ENSMFAG00000057817	SLC22A15 (ENSMFAG00000042672)	MAB21L3 (ENSMFAG00000042466)	ENSMFAG00000041093	ATP1A1 (ENSMFAG00000034219)	ENSMFAG00000000314	CD58 (ENSMFAG00000042899)	IGSF3 (ENSMFAG00000000910)	CD2 (ENSMFAG00000036150)	PTGFRN (ENSMFAG00000038301)	CD101 (ENSMFAG00000033865)	ENSMFAG00000042516	TRIM45 (ENSMFAG00000039230)
Rhesus	MODERN SPECIES		DCLRE1B (ENSMMUG00000019527) #8	AP4B1 (ENSMMUG00000019528) #7	HIPK1 (ENSMMUG00000021535) #9	SYT6 (ENSMMUG00000009781) #11	TRIM33 (ENSMMUG00000014620) #12	BCAS2 (ENSMMUG00000043063) #16	DENND2C (ENSMMUG00000014497) #14	AMPD1 (ENSMMUG00000001978) #15	NRAS (ENSMMUG00000049105) #17	CSDE1 (ENSMMUG00000001974) #18	SIKE1 (ENSMMUG00000001973)	SYCP1 (ENSMMUG00000017674) #19	TSHB (ENSMMUG00000058261) #20	TSPAN2 (ENSMMUG00000017421) #21	NGF (ENSMMUG00000062180)	VANGL1 (ENSMMUG00000008967) #22	CASQ2 (ENSMMUG00000008970) #23	NHLH2 (ENSMMUG00000053366)	ENSMMUG00000063202	SLC22A15 (ENSMMUG00000011860)	MAB21L3 (ENSMMUG00000000431)	ENSMMUG00000041725	ATP1A1 (ENSMMUG00000008151)	CD58 (ENSMMUG00000008156)	IGSF3 (ENSMMUG00000008157)	CD2 (ENSMMUG00000052649)	PTGFRN (ENSMMUG00000016900)	CD101 (ENSMMUG00000016904)	TTF2 (ENSMMUG00000016905)	TRIM45 (ENSMMUG00000015976)	VTCN1 (ENSMMUG00000016964)
Cercopithecinae_b	ANCESTRAL SPECIES	1	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000008859.b.d.k.a.a	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00940000153362.b.g	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300.c	ENSGT00940000157498
Olive baboon	MODERN SPECIES		DCLRE1B (ENSPANG00000029371) #8	HIPK1 (ENSPANG00000003119) #9	OLFML3 (ENSPANG00000015794) #10	SYT6 (ENSPANG00000005601) #11	TRIM33 (ENSPANG00000016076) #12	BCAS2 (ENSPANG00000019089) #16	DENND2C (ENSPANG00000024010) #14	AMPD1 (ENSPANG00000012433) #15	NRAS (ENSPANG00000008181) #17	CSDE1 (ENSPANG00000018873) #18	SIKE1 (ENSPANG00000015792)	SYCP1 (ENSPANG00000012296) #19	TSPAN2 (ENSPANG00000008556) #21	NGF (ENSPANG00000048544)	ENSPANG00000038005	VANGL1 (ENSPANG00000000935) #22	CASQ2 (ENSPANG00000004482) #23	NHLH2 (ENSPANG00000001481)	SLC22A15 (ENSPANG00000003118)	MAB21L3 (ENSPANG00000014173)	ENSPANG00000037734	ENSPANG00000039208	ATP1A1 (ENSPANG00000001212)	CD58 (ENSPANG00000044886)	IGSF3 (ENSPANG00000000305)	CD2 (ENSPANG00000015878)	PTGFRN (ENSPANG00000023468)	CD101 (ENSPANG00000011817)	ENSPANG00000012432	TRIM45 (ENSPANG00000012295)	ENSPANG00000039901
Cercopithecinae_d	ANCESTRAL SPECIES	49	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000008859.b.d.k.a.a	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00940000153362.b.g	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300.c	ENSGT00940000157498
Drill	MODERN SPECIES	1360	HIPK1 (ENSMLEG00000041059) #9	OLFML3 (ENSMLEG00000026231) #10	SYT6 (ENSMLEG00000032781) #11	TRIM33 (ENSMLEG00000027858) #12	ENSMLEG00000031821	BCAS2 (ENSMLEG00000036312) #16	DENND2C (ENSMLEG00000001523) #14	AMPD1 (ENSMLEG00000032457) #15	NRAS (ENSMLEG00000039333) #17	CSDE1 (ENSMLEG00000038673) #18	SIKE1 (ENSMLEG00000034245)	SYCP1 (ENSMLEG00000027871) #19	TSHB (ENSMLEG00000040982) #20	TSPAN2 (ENSMLEG00000036280) #21	NGF (ENSMLEG00000042620)	VANGL1 (ENSMLEG00000039246) #22	CASQ2 (ENSMLEG00000038887) #23	NHLH2 (ENSMLEG00000026800)	SLC22A15 (ENSMLEG00000030172)	MAB21L3 (ENSMLEG00000006311)	ATP1A1 (ENSMLEG00000030629)	CD58 (ENSMLEG00000033488)	ENSMLEG00000044327	IGSF3 (ENSMLEG00000000562)	CD2 (ENSMLEG00000036866)	PTGFRN (ENSMLEG00000033407)	CD101 (ENSMLEG00000039483)	TTF2 (ENSMLEG00000041549)	TRIM45 (ENSMLEG00000034608)	VTCN1 (ENSMLEG00000031487)	MAN1A2 (ENSMLEG00000041597)
Sooty mangabey	MODERN SPECIES	246	OLFML3 (ENSCATG00000041714) #10	SYT6 (ENSCATG00000040499) #11	TRIM33 (ENSCATG00000011671) #12	ENSCATG00000018546	BCAS2 (ENSCATG00000033204) #16	DENND2C (ENSCATG00000008808) #14	AMPD1 (ENSCATG00000036481) #15	NRAS (ENSCATG00000040984) #17	CSDE1 (ENSCATG00000036962) #18	SIKE1 (ENSCATG00000005298)	ENSCATG00000039685	SYCP1 (ENSCATG00000039270) #19	TSHB (ENSCATG00000039665) #20	TSPAN2 (ENSCATG00000034149) #21	NGF (ENSCATG00000017585)	VANGL1 (ENSCATG00000009145) #22	CASQ2 (ENSCATG00000004694) #23	NHLH2 (ENSCATG00000020039)	SLC22A15 (ENSCATG00000031862)	MAB21L3 (ENSCATG00000034482)	ATP1A1 (ENSCATG00000032036)	ENSCATG00000032280	CD58 (ENSCATG00000032372)	IGSF3 (ENSCATG00000038248)	CD2 (ENSCATG00000038663)	PTGFRN (ENSCATG00000034409)	CD101 (ENSCATG00000040181)
Rhinopithecus	ANCESTRAL SPECIES	10	ENSGT00940000158175 #8	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000008859.b.d.k.a.a	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950.m #18	ENSGT00390000018003.a	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00940000153362.b.g	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300.c	ENSGT00940000157498
Black snub-nosed monkey	MODERN SPECIES	299	DCLRE1B (ENSRBIG00000032633) #8	HIPK1 (ENSRBIG00000028252) #9	OLFML3 (ENSRBIG00000037707) #10	SYT6 (ENSRBIG00000033598) #11	TRIM33 (ENSRBIG00000044424) #12	BCAS2 (ENSRBIG00000036310) #16	DENND2C (ENSRBIG00000040882) #14	AMPD1 (ENSRBIG00000042678) #15	NRAS (ENSRBIG00000043132) #17	ENSRBIG00000038966 #18	SIKE1 (ENSRBIG00000042450)	SYCP1 (ENSRBIG00000040488) #19	TSHB (ENSRBIG00000030494) #20	TSPAN2 (ENSRBIG00000040980) #21	NGF (ENSRBIG00000043863)	VANGL1 (ENSRBIG00000040389) #22	CASQ2 (ENSRBIG00000044022) #23	NHLH2 (ENSRBIG00000021541)	SLC22A15 (ENSRBIG00000008924)	MAB21L3 (ENSRBIG00000028983)	ATP1A1 (ENSRBIG00000015454)	CD58 (ENSRBIG00000044416)	ENSRBIG00000035126	IGSF3 (ENSRBIG00000038679)	CD2 (ENSRBIG00000042753)	PTGFRN (ENSRBIG00000044418)	CD101 (ENSRBIG00000034556)	TTF2 (ENSRBIG00000042651)	TRIM45 (ENSRBIG00000027871)	ENSRBIG00000036563	MAN1A2 (ENSRBIG00000030646)
Golden snub-nosed monkey	MODERN SPECIES	1359																VANGL1 (ENSRROG00000045595) #22	CASQ2 (ENSRROG00000032390) #23	NHLH2 (ENSRROG00000028198)	SLC22A15 (ENSRROG00000038809)	MAB21L3 (ENSRROG00000041625)	ATP1A1 (ENSRROG00000044731)	ENSRROG00000032840	CD58 (ENSRROG00000001604)	IGSF3 (ENSRROG00000032335)	CD2 (ENSRROG00000023361)	PTGFRN (ENSRROG00000044241)	CD101 (ENSRROG00000039983)	TTF2 (ENSRROG00000013287)	TRIM45 (ENSRROG00000032031)	ENSRROG00000034154
Platyrrhini	ANCESTRAL SPECIES		ENSGT00940000158175 #8	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947.u.a #17	ENSGT00390000016950.o.a #18	ENSGT00390000018003.a	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000153362.b.g	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498
Cebidae	ANCESTRAL SPECIES	1	ENSGT00940000158175 #8	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947.u.a #17	ENSGT00390000016950.o.a #18	ENSGT00390000018003.a	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000153362.b.g	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498
Marmoset	MODERN SPECIES	19	OLFML3 (ENSCJAG00000075679) #10	ENSCJAG00000041494	ENSCJAG00000074095	SYT6 (ENSCJAG00000012333) #11	TRIM33 (ENSCJAG00000012339) #12	BCAS2 (ENSCJAG00000012448) #16	DENND2C (ENSCJAG00000012467) #14	AMPD1 (ENSCJAG00000012494) #15	NRAS (ENSCJAG00000036517) #17	CSDE1 (ENSCJAG00000012565) #18	SIKE1 (ENSCJAG00000012663)	SYCP1 (ENSCJAG00000012678) #19	TSPAN2 (ENSCJAG00000046657) #21	TSHB (ENSCJAG00000059226) #20	NGF (ENSCJAG00000070914)	VANGL1 (ENSCJAG00000012756) #22	CASQ2 (ENSCJAG00000012776) #23	NHLH2 (ENSCJAG00000079748)	SLC22A15 (ENSCJAG00000012813)	MAB21L3 (ENSCJAG00000006194)	ENSCJAG00000075676	ENSCJAG00000071068	ATP1A1 (ENSCJAG00000006058)	ENSCJAG00000071790	ENSCJAG00000006049	IGSF3 (ENSCJAG00000006006)	CD2 (ENSCJAG00000062649)	PTGFRN (ENSCJAG00000005961)	CD101 (ENSCJAG00000005944)	TTF2 (ENSCJAG00000005909)	TRIM45 (ENSCJAG00000005897)
Cebidae_a	ANCESTRAL SPECIES	41	ENSGT00940000158175 #8	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947.u.a #17	ENSGT00390000016950.o.a #18	ENSGT00390000018003.a	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000153362.b.g	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498
Bolivian squirrel monkey	MODERN SPECIES	98	DCLRE1B (ENSSBOG00000032509) #8	HIPK1 (ENSSBOG00000021509) #9	OLFML3 (ENSSBOG00000019004) #10	SYT6 (ENSSBOG00000035461) #11	TRIM33 (ENSSBOG00000032566) #12	BCAS2 (ENSSBOG00000027778) #16	DENND2C (ENSSBOG00000030035) #14	AMPD1 (ENSSBOG00000028352) #15	NRAS (ENSSBOG00000021039) #17	CSDE1 (ENSSBOG00000035592) #18	SIKE1 (ENSSBOG00000021497)	SYCP1 (ENSSBOG00000024910) #19	TSHB (ENSSBOG00000035791) #20	TSPAN2 (ENSSBOG00000002008) #21	NGF (ENSSBOG00000029889)	VANGL1 (ENSSBOG00000032697) #22	CASQ2 (ENSSBOG00000003704) #23	NHLH2 (ENSSBOG00000014733)	SLC22A15 (ENSSBOG00000031792)	MAB21L3 (ENSSBOG00000035896)	ATP1A1 (ENSSBOG00000020417)	ENSSBOG00000015813	CD58 (ENSSBOG00000032505)	ENSSBOG00000022544	IGSF3 (ENSSBOG00000024073)	CD2 (ENSSBOG00000022804)	ENSSBOG00000027638	PTGFRN (ENSSBOG00000020242)	ENSSBOG00000020480	CD101 (ENSSBOG00000024092)	TTF2 (ENSSBOG00000022555)
Capuchin	MODERN SPECIES	32	HIPK1 (ENSCCAG00000024302) #9	OLFML3 (ENSCCAG00000034108) #10	SYT6 (ENSCCAG00000037943) #11	TRIM33 (ENSCCAG00000031560) #12	ENSCCAG00000021894 #16	DENND2C (ENSCCAG00000021424) #14	AMPD1 (ENSCCAG00000021136) #15	NRAS (ENSCCAG00000030765) #17	ENSCCAG00000036794 #18	SIKE1 (ENSCCAG00000036846)	ENSCCAG00000026846	SYCP1 (ENSCCAG00000034214) #19	TSHB (ENSCCAG00000029875) #20	TSPAN2 (ENSCCAG00000035942) #21	NGF (ENSCCAG00000020128)	VANGL1 (ENSCCAG00000032113) #22	CASQ2 (ENSCCAG00000012372) #23	NHLH2 (ENSCCAG00000017644)	SLC22A15 (ENSCCAG00000030828)	MAB21L3 (ENSCCAG00000018744)	ATP1A1 (ENSCCAG00000036026)	CD58 (ENSCCAG00000024820)	IGSF3 (ENSCCAG00000035554)	CD2 (ENSCCAG00000036008)	ENSCCAG00000037368	PTGFRN (ENSCCAG00000034342)	CD101 (ENSCCAG00000037110)	TTF2 (ENSCCAG00000032675)	TRIM45 (ENSCCAG00000010371)	VTCN1 (ENSCCAG00000037336)	MAN1A2 (ENSCCAG00000034354)
Mas night monkey	MODERN SPECIES	775															CTTNBP2NL (ENSANAG00000024298)	VANGL1 (ENSANAG00000031103) #22	CASQ2 (ENSANAG00000024042) #23	NHLH2 (ENSANAG00000019186)	SLC22A15 (ENSANAG00000034011)	MAB21L3 (ENSANAG00000033656)	ATP1A1 (ENSANAG00000033098)	CD58 (ENSANAG00000024219)	IGSF3 (ENSANAG00000034335)	CD2 (ENSANAG00000035044)	PTGFRN (ENSANAG00000034823)	ENSANAG00000029336	CD101 (ENSANAG00000034882)	TTF2 (ENSANAG00000020654)	TRIM45 (ENSANAG00000020776)	VTCN1 (ENSANAG00000034173)	MAN1A2 (ENSANAG00000025558)
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336
Tree shrew	MODERN SPECIES	3916																ENSTBEG00000005450 #22	CASQ2 (ENSTBEG00000006068) #23	ENSTBEG00000007814
Glires	ANCESTRAL SPECIES		ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336
Lagomorpha	ANCESTRAL SPECIES	1	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.c.b #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336
Rabbit	MODERN SPECIES	4	SYT6 (ENSOCUG00000003523) #11	ENSOCUG00000024533	TRIM33 (ENSOCUG00000016427) #12	BCAS2 (ENSOCUG00000016784) #16	DENND2C (ENSOCUG00000016789) #14	AMPD1 (ENSOCUG00000016424) #15	NRAS (ENSOCUG00000022455) #17	CSDE1 (ENSOCUG00000016438) #18	SIKE1 (ENSOCUG00000016457)	ENSOCUG00000023188	ENSOCUG00000022499	ENSOCUG00000016463 #19	Tshb (ENSOCUG00000023876) #20	TSPAN2 (ENSOCUG00000001279) #21	NGF (ENSOCUG00000000659)	VANGL1 (ENSOCUG00000016240) #22	CASQ2 (ENSOCUG00000010594) #23	SLC22A15 (ENSOCUG00000015370)	MAB21L3 (ENSOCUG00000015382)	ATP1A1 (ENSOCUG00000001324)	IGSF3 (ENSOCUG00000005284)	CD2 (ENSOCUG00000008474)	PTGFRN (ENSOCUG00000000608)	CD101 (ENSOCUG00000000612)	TTF2 (ENSOCUG00000000613)	TRIM45 (ENSOCUG00000000237)	VTCN1 (ENSOCUG00000026343)	MAN1A2 (ENSOCUG00000012648)	ENSOCUG00000026654	ENSOCUG00000027717	GDAP2 (ENSOCUG00000007568)
Pika	MODERN SPECIES	3486																ENSOPRG00000006634 #22	ENSOPRG00000006647 #23	ENSOPRG00000006661
Rodentia	ANCESTRAL SPECIES		ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336
Rodentia_A	ANCESTRAL SPECIES		ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336
Sciuridae	ANCESTRAL SPECIES		ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336
Marmotini	ANCESTRAL SPECIES	62	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336
Alpin marmot	MODERN SPECIES	79	TRIM33 (ENSMMMG00000013428) #12	BCAS2 (ENSMMMG00000014333) #16	ENSMMMG00000014345	DENND2C (ENSMMMG00000014354) #14	AMPD1 (ENSMMMG00000014396) #15	NRAS (ENSMMMG00000014434) #17	CSDE1 (ENSMMMG00000014448) #18	SIKE1 (ENSMMMG00000014866)	ENSMMMG00000014870	ENSMMMG00000014879	SYCP1 (ENSMMMG00000014892) #19	ENSMMMG00000014952	TSHB (ENSMMMG00000014957) #20	TSPAN2 (ENSMMMG00000014968) #21	NGF (ENSMMMG00000014973)	VANGL1 (ENSMMMG00000014977) #22	CASQ2 (ENSMMMG00000014991) #23	NHLH2 (ENSMMMG00000015011)	SLC22A15 (ENSMMMG00000015020)	MAB21L3 (ENSMMMG00000015051)	ATP1A1 (ENSMMMG00000015066)	IGSF3 (ENSMMMG00000015107)	CD2 (ENSMMMG00000015127)	PTGFRN (ENSMMMG00000015141)	CD101 (ENSMMMG00000015154)	TTF2 (ENSMMMG00000015196)	ENSMMMG00000015205	TRIM45 (ENSMMMG00000015213)	VTCN1 (ENSMMMG00000015255)	MAN1A2 (ENSMMMG00000015283)	TENT5C (ENSMMMG00000015304)
Marmotini_b	ANCESTRAL SPECIES	74	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336
Arctic ground squirrel	MODERN SPECIES	134	OLFML3 (ENSUPAG00010022319) #10	SYT6 (ENSUPAG00010022321) #11	ENSUPAG00010022323	TRIM33 (ENSUPAG00010022324) #12	BCAS2 (ENSUPAG00010022333) #16	DENND2C (ENSUPAG00010022334) #14	AMPD1 (ENSUPAG00010022337) #15	NRAS (ENSUPAG00010022339) #17	CSDE1 (ENSUPAG00010022340) #18	SIKE1 (ENSUPAG00010022488)	ENSUPAG00010022495	SYCP1 (ENSUPAG00010022501) #19	TSHB (ENSUPAG00010022509) #20	TSPAN2 (ENSUPAG00010022515) #21	NGF (ENSUPAG00010022522)	VANGL1 (ENSUPAG00010022525) #22	CASQ2 (ENSUPAG00010022531) #23	NHLH2 (ENSUPAG00010022533)	SLC22A15 (ENSUPAG00010022536)	MAB21L3 (ENSUPAG00010022542)	ATP1A1 (ENSUPAG00010022544)
Squirrel	MODERN SPECIES	227							AMPD1 (ENSSTOG00000015082) #15	NRAS (ENSSTOG00000023151) #17	ENSSTOG00000032722 #18	SIKE1 (ENSSTOG00000001684)	ENSSTOG00000027072	ENSSTOG00000010304 #19	TSHB (ENSSTOG00000022113) #20	TSPAN2 (ENSSTOG00000020353) #21	NGF (ENSSTOG00000005518)	VANGL1 (ENSSTOG00000015734) #22	CASQ2 (ENSSTOG00000015738) #23	NHLH2 (ENSSTOG00000019698)	SLC22A15 (ENSSTOG00000016141)	MAB21L3 (ENSSTOG00000026516)	ATP1A1 (ENSSTOG00000016127)	IGSF3 (ENSSTOG00000022906)	CD2 (ENSSTOG00000004188)	PTGFRN (ENSSTOG00000010916)	CD101 (ENSSTOG00000010919)	TTF2 (ENSSTOG00000010927)	ENSSTOG00000034928	TRIM45 (ENSSTOG00000007369)	VTCN1 (ENSSTOG00000007389)	MAN1A2 (ENSSTOG00000016016)	TENT5C (ENSSTOG00000010392)
Eurasian red squirrel	MODERN SPECIES		ENSSVLG00005022108	ENSSVLG00005000093	ENSSVLG00005000121	BCAS2 (ENSSVLG00005000302) #16	DENND2C (ENSSVLG00005000379) #14	AMPD1 (ENSSVLG00005000465) #15	ENSSVLG00005000492 #17	CSDE1 (ENSSVLG00005000559) #18	SIKE1 (ENSSVLG00005000707)	ENSSVLG00005000743	SYCP1 (ENSSVLG00005000819) #19	TSHB (ENSSVLG00005000935) #20	TSPAN2 (ENSSVLG00005000967) #21	NGF (ENSSVLG00005001008)	ENSSVLG00005001021	VANGL1 (ENSSVLG00005001032) #22	CASQ2 (ENSSVLG00005001056) #23	NHLH2 (ENSSVLG00005001085)	SLC22A15 (ENSSVLG00005001098)	MAB21L3 (ENSSVLG00005001135)	ATP1A1 (ENSSVLG00005001182)	ENSSVLG00005001215	IGSF3 (ENSSVLG00005001236)	CD2 (ENSSVLG00005001265)	PTGFRN (ENSSVLG00005001283)	CD101 (ENSSVLG00005001302)	ENSSVLG00005001327	ENSSVLG00005001350	TRIM45 (ENSSVLG00005001388)	VTCN1 (ENSSVLG00005001433)	MAN1A2 (ENSSVLG00005001469)
Hystricomorpha	ANCESTRAL SPECIES	23	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336
Naked mole-rat female	MODERN SPECIES	10	TRIM33 (ENSHGLG00000015394) #12	BCAS2 (ENSHGLG00000013708) #16	ENSHGLG00000015587 #14	AMPD1 (ENSHGLG00000016007) #15	ENSHGLG00000009388 #17	CSDE1 (ENSHGLG00000009620) #18	SIKE1 (ENSHGLG00000015408)	ENSHGLG00000032648	ENSHGLG00000004974	ENSHGLG00000047308	ENSHGLG00000006103 #19	TSHB (ENSHGLG00000014600) #20	TSPAN2 (ENSHGLG00000010786) #21	NGF (ENSHGLG00000044577)	ENSHGLG00000032979	VANGL1 (ENSHGLG00000016399) #22	CASQ2 (ENSHGLG00000038257) #23	NHLH2 (ENSHGLG00000046588)	SLC22A15 (ENSHGLG00000011061)	MAB21L3 (ENSHGLG00000009205)	ATP1A1 (ENSHGLG00000009304)	IGSF3 (ENSHGLG00000018539)	CD2 (ENSHGLG00000014947)	PTGFRN (ENSHGLG00000019106)	CD101 (ENSHGLG00000018298)	TTF2 (ENSHGLG00000012459)	TRIM45 (ENSHGLG00000017735)	VTCN1 (ENSHGLG00000018792)	ENSHGLG00000045985	MAN1A2 (ENSHGLG00000017646)	FAM46C (ENSHGLG00000043157)
Hystricomorpha_a	ANCESTRAL SPECIES	14	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000164746	ENSGT00940000167338	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856
Guinea pig	MODERN SPECIES	2	HIPK1 (ENSCPOG00000001289) #9	OLFML3 (ENSCPOG00000001291) #10	SYT6 (ENSCPOG00000011032) #11	TRIM33 (ENSCPOG00000010140) #12	BCAS2 (ENSCPOG00000020532) #16	DENND2C (ENSCPOG00000012944) #14	AMPD1 (ENSCPOG00000002591) #15	NRAS (ENSCPOG00000021833) #17	CSDE1 (ENSCPOG00000040388) #18	SIKE1 (ENSCPOG00000007406)	ENSCPOG00000009115	SYCP1 (ENSCPOG00000012690) #19	TSHB (ENSCPOG00000030694) #20	TSPAN2 (ENSCPOG00000008376) #21	NGF (ENSCPOG00000024033)	VANGL1 (ENSCPOG00000001701) #22	CASQ2 (ENSCPOG00000001703) #23	NHLH2 (ENSCPOG00000026593)	SLC22A15 (ENSCPOG00000009506)	MAB21L3 (ENSCPOG00000009511)	ATP1A1 (ENSCPOG00000000927)	IGSF3 (ENSCPOG00000002029)	CD2 (ENSCPOG00000036418)	PTGFRN (ENSCPOG00000015740)	CD101 (ENSCPOG00000015741)	ENSCPOG00000000605	VTCN1 (ENSCPOG00000034001)	MAN1A2 (ENSCPOG00000004935)	TENT5C (ENSCPOG00000035573)	GDAP2 (ENSCPOG00000012599)	WDR3 (ENSCPOG00000011305)
Hystricomorpha_b	ANCESTRAL SPECIES	6	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000167338	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336
Long-tailed chinchilla	MODERN SPECIES	142	OLFML3 (ENSCLAG00000007544) #10	SYT6 (ENSCLAG00000011901) #11	TRIM33 (ENSCLAG00000017369) #12	BCAS2 (ENSCLAG00000004979) #16	DENND2C (ENSCLAG00000006608) #14	AMPD1 (ENSCLAG00000006645) #15	NRAS (ENSCLAG00000005888) #17	CSDE1 (ENSCLAG00000006618) #18	SIKE1 (ENSCLAG00000005344)	ENSCLAG00000006997	ENSCLAG00000013132	ENSCLAG00000004900 #19	TSHB (ENSCLAG00000011105) #20	TSPAN2 (ENSCLAG00000007865) #21	NGF (ENSCLAG00000004815)	VANGL1 (ENSCLAG00000006270) #22	CASQ2 (ENSCLAG00000007972) #23	NHLH2 (ENSCLAG00000005691)	SLC22A15 (ENSCLAG00000006619)	MAB21L3 (ENSCLAG00000004428)	ATP1A1 (ENSCLAG00000005733)	IGSF3 (ENSCLAG00000006923)	CD2 (ENSCLAG00000007838)	PTGFRN (ENSCLAG00000008229)	CD101 (ENSCLAG00000010019)	ENSCLAG00000014230	TRIM45 (ENSCLAG00000010898)	VTCN1 (ENSCLAG00000014982)	MAN1A2 (ENSCLAG00000008573)	TENT5C (ENSCLAG00000006985)	ENSCLAG00000007247
Degu	MODERN SPECIES	181	ENSODEG00000008694	BCAS2 (ENSODEG00000006983) #16	DENND2C (ENSODEG00000006463) #14	AMPD1 (ENSODEG00000009830) #15	NRAS (ENSODEG00000007937) #17	ENSODEG00000007383 #18	SIKE1 (ENSODEG00000007343)	ENSODEG00000010107	SYCP1 (ENSODEG00000006927) #19	TSHB (ENSODEG00000009005) #20	TSPAN2 (ENSODEG00000007319) #21	NGF (ENSODEG00000006538)	ENSODEG00000006379	ENSODEG00000008957	ENSODEG00000008559	VANGL1 (ENSODEG00000010599) #22	CASQ2 (ENSODEG00000009014) #23	NHLH2 (ENSODEG00000008157)	SLC22A15 (ENSODEG00000007565)	MAB21L3 (ENSODEG00000005924)	ATP1A1 (ENSODEG00000006810)	ENSODEG00000006132	IGSF3 (ENSODEG00000007439)	ENSODEG00000006855	PTGFRN (ENSODEG00000006807)	CD101 (ENSODEG00000006286)	ENSODEG00000006362	TRIM45 (ENSODEG00000007020)	VTCN1 (ENSODEG00000006757)	MAN1A2 (ENSODEG00000005674)	TENT5C (ENSODEG00000006187)
Rodentia_B	ANCESTRAL SPECIES		ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336
Myomorpha	ANCESTRAL SPECIES	12	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336
Muroidea	ANCESTRAL SPECIES	6	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336
Muroidea_A	ANCESTRAL SPECIES	5	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336
Murinae	ANCESTRAL SPECIES	5	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336
Mus	ANCESTRAL SPECIES	7	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336
Mus_A	ANCESTRAL SPECIES	9	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336
Mus_B	ANCESTRAL SPECIES	8	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336
Mouse	MODERN SPECIES	12	Olfml3 (ENSMUSG00000027848) #10	Atg4a-ps (ENSMUSG00000087119)	Syt6 (ENSMUSG00000027849) #11	Trim33 (ENSMUSG00000033014) #12	Bcas2 (ENSMUSG00000005687) #16	Dennd2c (ENSMUSG00000007379) #14	Ampd1 (ENSMUSG00000070385) #15	Nras (ENSMUSG00000027852) #17	Csde1 (ENSMUSG00000068823) #18	Sike1 (ENSMUSG00000027854)	Nr1h5 (ENSMUSG00000048938)	Sycp1 (ENSMUSG00000027855) #19	Tshb (ENSMUSG00000027857) #20	Tspan2 (ENSMUSG00000027858) #21	Ngf (ENSMUSG00000027859)	Vangl1 (ENSMUSG00000027860) #22	Casq2 (ENSMUSG00000027861) #23	Nhlh2 (ENSMUSG00000048540)	Slc22a15 (ENSMUSG00000033147)	Mab21l3 (ENSMUSG00000044313)	Atp1a1 (ENSMUSG00000033161)	Igsf3 (ENSMUSG00000042035)	Cd2 (ENSMUSG00000027863)	Ptgfrn (ENSMUSG00000027864)	Cd101 (ENSMUSG00000086564)	Ttf2 (ENSMUSG00000033222)	Trim45 (ENSMUSG00000033233)	Vtcn1 (ENSMUSG00000051076)	Man1a2 (ENSMUSG00000008763)	Tent5c (ENSMUSG00000044468)	Gdap2 (ENSMUSG00000027865)
Mus_C	ANCESTRAL SPECIES	6	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336
spretus	MODERN SPECIES	12	Hipk1 (MGP_SPRETEiJ_G0026402) #9	Olfml3 (MGP_SPRETEiJ_G0026401) #10	Syt6 (MGP_SPRETEiJ_G0026400) #11	Trim33 (MGP_SPRETEiJ_G0026399) #12	Bcas2 (MGP_SPRETEiJ_G0026398) #16	Dennd2c (MGP_SPRETEiJ_G0026397) #14	Ampd1 (MGP_SPRETEiJ_G0026396) #15	Nras (MGP_SPRETEiJ_G0026395) #17	Csde1 (MGP_SPRETEiJ_G0026394) #18	Sike1 (MGP_SPRETEiJ_G0026393)	Nr1h5 (MGP_SPRETEiJ_G0026392)	Sycp1 (MGP_SPRETEiJ_G0026391) #19	Tshb (MGP_SPRETEiJ_G0026390) #20	Tspan2 (MGP_SPRETEiJ_G0026389) #21	Ngf (MGP_SPRETEiJ_G0026388)	Vangl1 (MGP_SPRETEiJ_G0026387) #22	Casq2 (MGP_SPRETEiJ_G0026386) #23	Nhlh2 (MGP_SPRETEiJ_G0026385)	Slc22a15 (MGP_SPRETEiJ_G0026384)	Mab21l3 (MGP_SPRETEiJ_G0026383)	Atp1a1 (MGP_SPRETEiJ_G0026382)	Igsf3 (MGP_SPRETEiJ_G0026381)	Cd2 (MGP_SPRETEiJ_G0026380)	Ptgfrn (MGP_SPRETEiJ_G0026379)	Cd101 (MGP_SPRETEiJ_G0026378)	Ttf2 (MGP_SPRETEiJ_G0026377)	Trim45 (MGP_SPRETEiJ_G0026376)	Vtcn1 (MGP_SPRETEiJ_G0026375)	Man1a2 (MGP_SPRETEiJ_G0026374)	Tent5c (MGP_SPRETEiJ_G0026373)	Gdap2 (MGP_SPRETEiJ_G0026372)
Ryukyu mouse	MODERN SPECIES	12	MGP_CAROLIEiJ_G0025452	Olfml3 (MGP_CAROLIEiJ_G0025451) #10	Syt6 (MGP_CAROLIEiJ_G0025450) #11	Trim33 (MGP_CAROLIEiJ_G0025449) #12	Bcas2 (MGP_CAROLIEiJ_G0025448) #16	Dennd2c (MGP_CAROLIEiJ_G0025447) #14	Ampd1 (MGP_CAROLIEiJ_G0025446) #15	Nras (MGP_CAROLIEiJ_G0025445) #17	Csde1 (MGP_CAROLIEiJ_G0025444) #18	Sike1 (MGP_CAROLIEiJ_G0025443)	Nr1h5 (MGP_CAROLIEiJ_G0025442)	MGP_CAROLIEiJ_G0025441 #19	Tshb (MGP_CAROLIEiJ_G0025440) #20	Tspan2 (MGP_CAROLIEiJ_G0025439) #21	Ngf (MGP_CAROLIEiJ_G0025438)	Vangl1 (MGP_CAROLIEiJ_G0025437) #22	Casq2 (MGP_CAROLIEiJ_G0025436) #23	Nhlh2 (MGP_CAROLIEiJ_G0025435)	Slc22a15 (MGP_CAROLIEiJ_G0025434)	Mab21l3 (MGP_CAROLIEiJ_G0025433)	Atp1a1 (MGP_CAROLIEiJ_G0025432)	Igsf3 (MGP_CAROLIEiJ_G0025431)	Cd2 (MGP_CAROLIEiJ_G0025430)	Ptgfrn (MGP_CAROLIEiJ_G0025429)	Cd101 (MGP_CAROLIEiJ_G0025428)	Ttf2 (MGP_CAROLIEiJ_G0025427)	MGP_CAROLIEiJ_G0025426	Vtcn1 (MGP_CAROLIEiJ_G0025425)	Man1a2 (MGP_CAROLIEiJ_G0025424)	Tent5c (MGP_CAROLIEiJ_G0025423)	Gdap2 (MGP_CAROLIEiJ_G0025422)
Shrew mouse	MODERN SPECIES	17	MGP_PahariEiJ_G0026896	Olfml3 (MGP_PahariEiJ_G0026895) #10	Syt6 (MGP_PahariEiJ_G0026894) #11	Trim33 (MGP_PahariEiJ_G0026893) #12	Bcas2 (MGP_PahariEiJ_G0026892) #16	Dennd2c (MGP_PahariEiJ_G0026891) #14	Ampd1 (MGP_PahariEiJ_G0026890) #15	Nras (MGP_PahariEiJ_G0026889) #17	Csde1 (MGP_PahariEiJ_G0026888) #18	Sike1 (MGP_PahariEiJ_G0026887)	Nr1h5 (MGP_PahariEiJ_G0026886)	Sycp1 (MGP_PahariEiJ_G0026885) #19	Tshb (MGP_PahariEiJ_G0026884) #20	Tspan2 (MGP_PahariEiJ_G0026883) #21	Ngf (MGP_PahariEiJ_G0026882)	Vangl1 (MGP_PahariEiJ_G0026881) #22	Casq2 (MGP_PahariEiJ_G0026880) #23	Nhlh2 (MGP_PahariEiJ_G0026879)	Slc22a15 (MGP_PahariEiJ_G0026878)	Mab21l3 (MGP_PahariEiJ_G0026877)	Atp1a1 (MGP_PahariEiJ_G0026876)	Igsf3 (MGP_PahariEiJ_G0026875)	Cd2 (MGP_PahariEiJ_G0026874)	Ptgfrn (MGP_PahariEiJ_G0026873)	Cd101 (MGP_PahariEiJ_G0026872)	Ttf2 (MGP_PahariEiJ_G0026871)	MGP_PahariEiJ_G0026870	Vtcn1 (MGP_PahariEiJ_G0026869)	Man1a2 (MGP_PahariEiJ_G0026868)	Tent5c (MGP_PahariEiJ_G0026867)	Gdap2 (MGP_PahariEiJ_G0026866)
Rat	MODERN SPECIES	11	Syt6 (ENSRNOG00000019163) #11	Rbis (ENSRNOG00000038902)	Trim33 (ENSRNOG00000018946) #12	ENSRNOG00000067127	Bcas2 (ENSRNOG00000018783) #16	Dennd2c (ENSRNOG00000018716) #14	Ampd1 (ENSRNOG00000018656) #15	Nras (ENSRNOG00000023079) #17	Csde1 (ENSRNOG00000061058) #18	Sike1 (ENSRNOG00000017502)	Nr1h5 (ENSRNOG00000023073)	Sycp1 (ENSRNOG00000016835) #19	Tshb (ENSRNOG00000016793) #20	Tspan2 (ENSRNOG00000023338) #21	Ngf (ENSRNOG00000016571)	Vangl1 (ENSRNOG00000016477) #22	Casq2 (ENSRNOG00000016243) #23	Nhlh2 (ENSRNOG00000054375)	Slc22a15 (ENSRNOG00000033051)	Mab21l3 (ENSRNOG00000016044)	Atp1a1 (ENSRNOG00000030019)	Igsf3 (ENSRNOG00000023851)	Cd2 (ENSRNOG00000015821)	ENSRNOG00000069649	Ptgfrn (ENSRNOG00000015655)	Cd101 (ENSRNOG00000037190)	Ttf2 (ENSRNOG00000057761)	Trim45 (ENSRNOG00000015347)	Vtcn1 (ENSRNOG00000015279)	ENSRNOG00000067753	Man1a2 (ENSRNOG00000015226)
Cricetidae	ANCESTRAL SPECIES	6	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000165376	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856
Cricetidae_B	ANCESTRAL SPECIES	3	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000164746	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336
Prairie vole	MODERN SPECIES	8	Olfml3 (ENSMOCG00000001104) #10	Syt6 (ENSMOCG00000017004) #11	Trim33 (ENSMOCG00000013853) #12	Bcas2 (ENSMOCG00000013157) #16	Dennd2c (ENSMOCG00000009830) #14	Ampd1 (ENSMOCG00000010785) #15	Nras (ENSMOCG00000022441) #17	Csde1 (ENSMOCG00000018960) #18	ENSMOCG00000009367	Sike1 (ENSMOCG00000000516)	Nr1h5 (ENSMOCG00000012316)	Sycp1 (ENSMOCG00000009622) #19	Tshb (ENSMOCG00000006126) #20	Tspan2 (ENSMOCG00000003591) #21	Ngf (ENSMOCG00000021179)	Vangl1 (ENSMOCG00000018281) #22	Casq2 (ENSMOCG00000014851) #23	Nhlh2 (ENSMOCG00000007572)	ENSMOCG00000020465	Mab21l3 (ENSMOCG00000016617)	Atp1a1 (ENSMOCG00000006963)	Igsf3 (ENSMOCG00000005813)	Ptgfrn (ENSMOCG00000020768)	Ttf2 (ENSMOCG00000008415)	Trim45 (ENSMOCG00000000422)	Vtcn1 (ENSMOCG00000000748)	Man1a2 (ENSMOCG00000020901)	Tent5c (ENSMOCG00000018840)	Gdap2 (ENSMOCG00000011700)	Wdr3 (ENSMOCG00000014361)	Spag17 (ENSMOCG00000001590)
Northern American deer mouse	MODERN SPECIES	19	Hipk1 (ENSPEMG00000020639) #9	Olfml3 (ENSPEMG00000010380) #10	Syt6 (ENSPEMG00000013637) #11	Trim33 (ENSPEMG00000011885) #12	Bcas2 (ENSPEMG00000023530) #16	Dennd2c (ENSPEMG00000002658) #14	Ampd1 (ENSPEMG00000017567) #15	Nras (ENSPEMG00000029639) #17	Csde1 (ENSPEMG00000020357) #18	Sike1 (ENSPEMG00000020550)	Nr1h5 (ENSPEMG00000021165)	Sycp1 (ENSPEMG00000023338) #19	Tshb (ENSPEMG00000024182) #20	Tspan2 (ENSPEMG00000023387) #21	Ngf (ENSPEMG00000001587)	Vangl1 (ENSPEMG00000026640) #22	Casq2 (ENSPEMG00000012959) #23	Nhlh2 (ENSPEMG00000025983)	Slc22a15 (ENSPEMG00000023603)	Mab21l3 (ENSPEMG00000023035)	Atp1a1 (ENSPEMG00000010999)	Igsf3 (ENSPEMG00000011916)	Cd2 (ENSPEMG00000018550)	Ptgfrn (ENSPEMG00000009682)	Cd101 (ENSPEMG00000008402)	ENSPEMG00000010330	ENSPEMG00000010451	Trim45 (ENSPEMG00000007787)	ENSPEMG00000027103	Man1a2 (ENSPEMG00000007670)	ENSPEMG00000031182
Cricetinae	ANCESTRAL SPECIES	12	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000165376	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336
Chinese hamster chok1gshd	MODERN SPECIES	66	Syt6 (ENSCGRG00001021814) #11	Trim33 (ENSCGRG00001014166) #12	Bcas2 (ENSCGRG00001021315) #16	Dennd2c (ENSCGRG00001009814) #14	Ampd1 (ENSCGRG00001014246) #15	Nras (ENSCGRG00001020093) #17	ENSCGRG00001016833 #18	ENSCGRG00001011859	Sike1 (ENSCGRG00001023509)	Nr1h5 (ENSCGRG00001022882)	Sycp1 (ENSCGRG00001010102) #19	ENSCGRG00001006375	Tshb (ENSCGRG00001012202) #20	Tspan2 (ENSCGRG00001014655) #21	Ngf (ENSCGRG00001000250)	Vangl1 (ENSCGRG00001022127) #22	Casq2 (ENSCGRG00001013746) #23	Nhlh2 (ENSCGRG00001009328)	Slc22a15 (ENSCGRG00001018525)	Mab21l3 (ENSCGRG00001018373)	Atp1a1 (ENSCGRG00001024330)	Igsf3 (ENSCGRG00001017829)	Cd2 (ENSCGRG00001019348)	Ptgfrn (ENSCGRG00001022148)	Cd101 (ENSCGRG00001024359)	ENSCGRG00001006277	Trim45 (ENSCGRG00001000157)	Vtcn1 (ENSCGRG00001015357)	Man1a2 (ENSCGRG00001020266)	Tent5c (ENSCGRG00001005586)	Gdap2 (ENSCGRG00001012369)
Golden Hamster	MODERN SPECIES	681	Hipk1 (ENSMAUG00000004979) #9	Olfml3 (ENSMAUG00000000373) #10	Syt6 (ENSMAUG00000017513) #11	Trim33 (ENSMAUG00000014592) #12	Bcas2 (ENSMAUG00000013855) #16	Dennd2c (ENSMAUG00000013289) #14	Ampd1 (ENSMAUG00000001096) #15	Nras (ENSMAUG00000019927) #17	Csde1 (ENSMAUG00000014031) #18	Sike1 (ENSMAUG00000012482)	Nr1h5 (ENSMAUG00000010803)	Sycp1 (ENSMAUG00000000328) #19	Tshb (ENSMAUG00000005156) #20	Tspan2 (ENSMAUG00000004539) #21	ENSMAUG00000002276	Vangl1 (ENSMAUG00000009480) #22	Casq2 (ENSMAUG00000000284) #23	Nhlh2 (ENSMAUG00000016936)	Slc22a15 (ENSMAUG00000010758)	Mab21l3 (ENSMAUG00000009568)	ENSMAUG00000008452	Atp1a1 (ENSMAUG00000017136)	ENSMAUG00000017849	Igsf3 (ENSMAUG00000013987)	Cd2 (ENSMAUG00000012774)	Ptgfrn (ENSMAUG00000002851)	Cd101 (ENSMAUG00000017674)	ENSMAUG00000016725	Trim45 (ENSMAUG00000013623)	Vtcn1 (ENSMAUG00000015061)	Man1a2 (ENSMAUG00000000417)
Upper Galilee mountains blind mole rat	MODERN SPECIES	868	ENSNGAG00000012040	Olfml3 (ENSNGAG00000017564) #10	Syt6 (ENSNGAG00000021329) #11	Trim33 (ENSNGAG00000021291) #12	Bcas2 (ENSNGAG00000011988) #16	Dennd2c (ENSNGAG00000023499) #14	Ampd1 (ENSNGAG00000023553) #15	Nras (ENSNGAG00000007289) #17	ENSNGAG00000021929 #18	Sike1 (ENSNGAG00000016770)	Nr1h5 (ENSNGAG00000010800)	Sycp1 (ENSNGAG00000012549) #19	Tshb (ENSNGAG00000001574) #20	Tspan2 (ENSNGAG00000014905) #21	Ngf (ENSNGAG00000018398)	Vangl1 (ENSNGAG00000021078) #22	Casq2 (ENSNGAG00000012360) #23	Nhlh2 (ENSNGAG00000022644)	ENSNGAG00000017546	Mab21l3 (ENSNGAG00000013724)	Atp1a1 (ENSNGAG00000022692)	Igsf3 (ENSNGAG00000024078)	Cd2 (ENSNGAG00000015298)
Lesser Egyptian jerboa	MODERN SPECIES	144	Olfml3 (ENSJJAG00000021371) #10	Syt6 (ENSJJAG00000020309) #11	Trim33 (ENSJJAG00000012942) #12	ENSJJAG00000007313 #16	Dennd2c (ENSJJAG00000009709) #14	Ampd1 (ENSJJAG00000021675) #15	ENSJJAG00000020941 #17	Csde1 (ENSJJAG00000019571) #18	ENSJJAG00000019089	Nr1h5 (ENSJJAG00000018578)	ENSJJAG00000018067 #19	Tshb (ENSJJAG00000001329) #20	Tspan2 (ENSJJAG00000000832) #21	Ngf (ENSJJAG00000022901)	ENSJJAG00000021722	Vangl1 (ENSJJAG00000021462) #22	Casq2 (ENSJJAG00000020862) #23	Nhlh2 (ENSJJAG00000019983)	Slc22a15 (ENSJJAG00000000255)	Mab21l3 (ENSJJAG00000022482)	Atp1a1 (ENSJJAG00000020791)	Igsf3 (ENSJJAG00000017489)	Cd2 (ENSJJAG00000019842)	Ptgfrn (ENSJJAG00000019616)	Ttf2 (ENSJJAG00000015225)	Trim45 (ENSJJAG00000007227)	Vtcn1 (ENSJJAG00000019207)	ENSJJAG00000018170	Man1a2 (ENSJJAG00000017865)	Tent5c (ENSJJAG00000013174)	ENSJJAG00000017333
Kangaroo rat	MODERN SPECIES	397	ENSDORG00000014015 #8	Hipk1 (ENSDORG00000010311) #9	Olfml3 (ENSDORG00000010313) #10	Syt6 (ENSDORG00000012083) #11	Trim33 (ENSDORG00000005438) #12	Bcas2 (ENSDORG00000014220) #16	Dennd2c (ENSDORG00000014222) #14	Ampd1 (ENSDORG00000005377) #15	Nras (ENSDORG00000025267) #17	Csde1 (ENSDORG00000011609) #18	Sike1 (ENSDORG00000005162)	ENSDORG00000027896 #19	Tshb (ENSDORG00000003238) #20	Tspan2 (ENSDORG00000003239) #21	Ngf (ENSDORG00000025001)	Vangl1 (ENSDORG00000013118) #22	Casq2 (ENSDORG00000013122) #23	ENSDORG00000010026	ENSDORG00000028402	Mab21l3 (ENSDORG00000010259)	Atp1a1 (ENSDORG00000028959)	Igsf3 (ENSDORG00000010085)	Ptgfrn (ENSDORG00000013777)	Cd101 (ENSDORG00000013779)	Ttf2 (ENSDORG00000013781)	Vtcn1 (ENSDORG00000013786)	Man1a2 (ENSDORG00000025695)	Tent5c (ENSDORG00000010159)	Gdap2 (ENSDORG00000001079)	Wdr3 (ENSDORG00000011031)	Spag17 (ENSDORG00000011032)
Laurasiatheria	ANCESTRAL SPECIES		ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856
Artiodactyla	ANCESTRAL SPECIES		ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856
Suina	ANCESTRAL SPECIES	32	ENSGT00940000158175 #8	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856
Pig	MODERN SPECIES	12	HIPK1 (ENSSSCG00000006760) #9	OLFML3 (ENSSSCG00000045712) #10	SYT6 (ENSSSCG00000006758) #11	TRIM33 (ENSSSCG00000006757) #12	BCAS2 (ENSSSCG00000055502) #16	DENND2C (ENSSSCG00000006755) #14	AMPD1 (ENSSSCG00000006754) #15	NRAS (ENSSSCG00000032477) #17	CSDE1 (ENSSSCG00000006752) #18	SIKE1 (ENSSSCG00000006751)	SYCP1 (ENSSSCG00000006750) #19	TSHB (ENSSSCG00000006749) #20	TSPAN2 (ENSSSCG00000006748) #21	NGF (ENSSSCG00000032417)	ENSSSCG00000042421	VANGL1 (ENSSSCG00000006746) #22	CASQ2 (ENSSSCG00000061647) #23	NHLH2 (ENSSSCG00000006744)	SLC22A15 (ENSSSCG00000006743)	MAB21L3 (ENSSSCG00000006742)	ATP1A1 (ENSSSCG00000006740)	ENSSSCG00000040692	CD58 (ENSSSCG00000006738)	IGSF3 (ENSSSCG00000006737)	CD2 (ENSSSCG00000006736)	PTGFRN (ENSSSCG00000006735)	CD101 (ENSSSCG00000006734)	TTF2 (ENSSSCG00000006733)	TRIM45 (ENSSSCG00000006732)	ENSSSCG00000044178	VTCN1 (ENSSSCG00000006731)
Chacoan peccary	MODERN SPECIES	29	HSPB2 (ENSCWAG00000003526)	DIXDC1 (ENSCWAG00000003452)	DLAT (ENSCWAG00000003431)	PIH1D2 (ENSCWAG00000003416)	NKAPD1 (ENSCWAG00000003402)	TIMM8B (ENSCWAG00000003395)	SDHD (ENSCWAG00000003372)	IL18 (ENSCWAG00000003351)	TEX12 (ENSCWAG00000003333)	BCO2 (ENSCWAG00000003115)	ENSCWAG00000003073	ENSCWAG00000003060	TSHB (ENSCWAG00000003050) #20	TSPAN2 (ENSCWAG00000003035) #21	NGF (ENSCWAG00000003021)	VANGL1 (ENSCWAG00000002974) #22	CASQ2 (ENSCWAG00000002945) #23	NHLH2 (ENSCWAG00000002933)	SLC22A15 (ENSCWAG00000002907)	MAB21L3 (ENSCWAG00000002889)	ATP1A1 (ENSCWAG00000002813)	ENSCWAG00000002786	IGSF3 (ENSCWAG00000002762)	ENSCWAG00000002742	PTGFRN (ENSCWAG00000002730)	CD101 (ENSCWAG00000002714)	TTF2 (ENSCWAG00000002699)	TRIM45 (ENSCWAG00000002677)	VTCN1 (ENSCWAG00000002628)	MAN1A2 (ENSCWAG00000002585)	TENT5C (ENSCWAG00000002576)
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856
Cetacea	ANCESTRAL SPECIES		ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00950000183109.c.a.a.n	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498
Odontoceti	ANCESTRAL SPECIES		ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00950000183109.c.a.a.n	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000153503.a.b.w.b	ENSGT00940000158367	ENSGT00940000161722	ENSGT00950000183109.c.a.a.m.b	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300
Monodontidae	ANCESTRAL SPECIES		ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000153503.a.b.w.b	ENSGT00940000158367	ENSGT00940000161722	ENSGT00950000183109.c.a.a.m.b.c	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300
Narwhal	MODERN SPECIES	304	HIPK1 (ENSMMNG00015015746) #9	OLFML3 (ENSMMNG00015015695) #10	SYT6 (ENSMMNG00015015657) #11	TRIM33 (ENSMMNG00015015579) #12	BCAS2 (ENSMMNG00015015561) #16	DENND2C (ENSMMNG00015015542) #14	AMPD1 (ENSMMNG00015015503) #15	NRAS (ENSMMNG00015015474) #17	CSDE1 (ENSMMNG00015015367) #18	SIKE1 (ENSMMNG00015015257)	ENSMMNG00015004059	SYCP1 (ENSMMNG00015003966) #19	TSHB (ENSMMNG00015003906) #20	TSPAN2 (ENSMMNG00015003882) #21	NGF (ENSMMNG00015003864)	VANGL1 (ENSMMNG00015003837) #22	CASQ2 (ENSMMNG00015003803) #23	NHLH2 (ENSMMNG00015003773)	SLC22A15 (ENSMMNG00015003758)	MAB21L3 (ENSMMNG00015003735)	ATP1A1 (ENSMMNG00015003636)	ENSMMNG00015003565	IGSF3 (ENSMMNG00015003523)	CD2 (ENSMMNG00015003495)	ENSMMNG00015003481	ENSMMNG00015003468	PTGFRN (ENSMMNG00015003441)	CD101 (ENSMMNG00015003430)	ENSMMNG00015003412	TTF2 (ENSMMNG00015003336)	TRIM45 (ENSMMNG00015003284)
Beluga whale	MODERN SPECIES	74	HIPK1 (ENSDLEG00000015570) #9	OLFML3 (ENSDLEG00000015587) #10	SYT6 (ENSDLEG00000015599) #11	TRIM33 (ENSDLEG00000015645) #12	ENSDLEG00000016183 #16	DENND2C (ENSDLEG00000016190) #14	AMPD1 (ENSDLEG00000016228) #15	NRAS (ENSDLEG00000016286) #17	CSDE1 (ENSDLEG00000016299) #18	SIKE1 (ENSDLEG00000016348)	ENSDLEG00000016361	SYCP1 (ENSDLEG00000016413) #19	TSHB (ENSDLEG00000016555) #20	TSPAN2 (ENSDLEG00000016564) #21	NGF (ENSDLEG00000016573)	VANGL1 (ENSDLEG00000016587) #22	CASQ2 (ENSDLEG00000016613) #23	NHLH2 (ENSDLEG00000016681)	SLC22A15 (ENSDLEG00000016683)	MAB21L3 (ENSDLEG00000016704)	ATP1A1 (ENSDLEG00000016719)	CD58 (ENSDLEG00000016764)	IGSF3 (ENSDLEG00000016776)	CD2 (ENSDLEG00000016800)	ENSDLEG00000016812	PTGFRN (ENSDLEG00000016825)	CD101 (ENSDLEG00000016843)	ENSDLEG00000016876	TTF2 (ENSDLEG00000016896)	TRIM45 (ENSDLEG00000016923)	MAN1A2 (ENSDLEG00000007933)
Vaquita	MODERN SPECIES		OLFML3 (ENSPSNG00000001941) #10	SYT6 (ENSPSNG00000001976) #11	TRIM33 (ENSPSNG00000002067) #12	BCAS2 (ENSPSNG00000002254) #16	DENND2C (ENSPSNG00000002295) #14	AMPD1 (ENSPSNG00000002369) #15	NRAS (ENSPSNG00000002442) #17	CSDE1 (ENSPSNG00000002494) #18	SIKE1 (ENSPSNG00000002576)	ENSPSNG00000002610	SYCP1 (ENSPSNG00000002726) #19	TSHB (ENSPSNG00000002854) #20	TSPAN2 (ENSPSNG00000002875) #21	ENSPSNG00000002914	NGF (ENSPSNG00000002934)	VANGL1 (ENSPSNG00000002964) #22	CASQ2 (ENSPSNG00000002987) #23	NHLH2 (ENSPSNG00000003008)	ENSPSNG00000003023	SLC22A15 (ENSPSNG00000003035)	MAB21L3 (ENSPSNG00000003053)	ATP1A1 (ENSPSNG00000003098)	ENSPSNG00000003168	IGSF3 (ENSPSNG00000003204)	CD2 (ENSPSNG00000003248)	ENSPSNG00000003272	ENSPSNG00000003280	ENSPSNG00000003294	PTGFRN (ENSPSNG00000003312)	CD101 (ENSPSNG00000003355)	ENSPSNG00000003381
Dolphin	MODERN SPECIES	1972																VANGL1 (ENSTTRG00000003109) #22	CASQ2 (ENSTTRG00000003111) #23	NHLH2 (ENSTTRG00000003112)
Sperm whale	MODERN SPECIES	15	AMPD1 (ENSPCTG00005001044) #15	ENSPCTG00005001015	ENSPCTG00005001006 #17	CSDE1 (ENSPCTG00005000733) #18	SIKE1 (ENSPCTG00005000661)	ENSPCTG00005000647	ENSPCTG00005000637	ENSPCTG00005000620	ENSPCTG00005000610	SYCP1 (ENSPCTG00005000455) #19	ENSPCTG00005000403	ENSPCTG00005000393	TSHB (ENSPCTG00005000377) #20	TSPAN2 (ENSPCTG00005000352) #21	NGF (ENSPCTG00005000314)	VANGL1 (ENSPCTG00005000293) #22	CASQ2 (ENSPCTG00005000263) #23	NHLH2 (ENSPCTG00005000232)	SLC22A15 (ENSPCTG00005018619)	ATP1A1 (ENSPCTG00005018474)	CD58 (ENSPCTG00005018443)	IGSF3 (ENSPCTG00005018364)	CD2 (ENSPCTG00005018150)	PTGFRN (ENSPCTG00005018118)	CD101 (ENSPCTG00005018027)	ENSPCTG00005017986	TTF2 (ENSPCTG00005017917)	TRIM45 (ENSPCTG00005017746)	VTCN1 (ENSPCTG00005017689)	MAN1A2 (ENSPCTG00005017570)	TENT5C (ENSPCTG00005017545)
Blue whale	MODERN SPECIES		HIPK1 (ENSBMSG00010009685) #9	OLFML3 (ENSBMSG00010009742) #10	SYT6 (ENSBMSG00010009762) #11	TRIM33 (ENSBMSG00010009825) #12	BCAS2 (ENSBMSG00010009881) #16	DENND2C (ENSBMSG00010009901) #14	AMPD1 (ENSBMSG00010009959) #15	NRAS (ENSBMSG00010000036) #17	CSDE1 (ENSBMSG00010000067) #18	SIKE1 (ENSBMSG00010000128)	ENSBMSG00010000161	SYCP1 (ENSBMSG00010000313) #19	TSHB (ENSBMSG00010000462) #20	TSPAN2 (ENSBMSG00010000486) #21	NGF (ENSBMSG00010000509)	VANGL1 (ENSBMSG00010000530) #22	CASQ2 (ENSBMSG00010000556) #23	NHLH2 (ENSBMSG00010000584)	SLC22A15 (ENSBMSG00010000600)	MAB21L3 (ENSBMSG00010000624)	ATP1A1 (ENSBMSG00010000656)	CD58 (ENSBMSG00010000750)	IGSF3 (ENSBMSG00010000848)	CD2 (ENSBMSG00010000892)	PTGFRN (ENSBMSG00010000912)	CD101 (ENSBMSG00010000941)	ENSBMSG00010000968	TTF2 (ENSBMSG00010000984)	TRIM45 (ENSBMSG00010001017)	VTCN1 (ENSBMSG00010001035)	MAN1A2 (ENSBMSG00010001075)
Pecora	ANCESTRAL SPECIES	2	ENSGT00940000158175 #8	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494.qb #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856
Yarkand deer	MODERN SPECIES	12	OLFML3 (ENSCHYG00000018919) #10	SYT6 (ENSCHYG00000018604) #11	TRIM33 (ENSCHYG00000017681) #12	ENSCHYG00000017608	ENSCHYG00000017515 #16	DENND2C (ENSCHYG00000017309) #14	AMPD1 (ENSCHYG00000016598) #15	NRAS (ENSCHYG00000016503) #17	CSDE1 (ENSCHYG00000016050) #18	SIKE1 (ENSCHYG00000015766)	ENSCHYG00000015651	SYCP1 (ENSCHYG00000015396) #19	TSHB (ENSCHYG00000015320) #20	TSPAN2 (ENSCHYG00000015066) #21	NGF (ENSCHYG00000014981)	VANGL1 (ENSCHYG00000014894) #22	CASQ2 (ENSCHYG00000014814) #23	NHLH2 (ENSCHYG00000014773)	ENSCHYG00000014737	ENSCHYG00000014605	MAB21L3 (ENSCHYG00000014551)	ATP1A1 (ENSCHYG00000013765)	ENSCHYG00000013650	IGSF3 (ENSCHYG00000013489)	CD2 (ENSCHYG00000013421)	PTGFRN (ENSCHYG00000013321)	CD101 (ENSCHYG00000013230)	TTF2 (ENSCHYG00000013086)	TRIM45 (ENSCHYG00000013005)	VTCN1 (ENSCHYG00000012876)	ENSCHYG00000012828
Percora_a	ANCESTRAL SPECIES	1	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494.qb #16	ENSGT00390000014494.pb #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856
Bovidae	ANCESTRAL SPECIES	1	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494.qb #16	ENSGT00390000014494.pb #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856
Bovinae	ANCESTRAL SPECIES	1	ENSGT00940000156361.B #12	ENSGT00390000014494.qb #16	ENSGT00940000153311.a.b.a.i.b.b	ENSGT00390000014494.pb #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950.g #18	ENSGT00390000016950.h #18	ENSGT00390000018003.a	ENSGT00390000009724.l.w.b.c.a	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856
Bos	ANCESTRAL SPECIES		ENSGT00940000156361.B #12	ENSGT00390000014494.qb #16	ENSGT00940000153311.a.b.a.i.b.b	ENSGT00390000014494.pb #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950.g #18	ENSGT00390000016950.h #18	ENSGT00390000018003.a	ENSGT00390000009724.l.w.b.c.a	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT01100000263481.n.a.a.a.a.a.a.a.a.a.b.a.a	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498
Bos_a	ANCESTRAL SPECIES	32	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494.qb #16	ENSGT00940000153311.a.b.a.i.b.b	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950.h #18	ENSGT00390000018003.a	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT01100000263481.n.a.a.a.a.a.a.a.a.a.b.a.a	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498
Wild yak	MODERN SPECIES	1104																VANGL1 (ENSBMUG00000006077) #22	CASQ2 (ENSBMUG00000006060) #23	NHLH2 (ENSBMUG00000006051)	BIRC2 (ENSBMUG00000006026)	ENSBMUG00000006001	ENSBMUG00000005991	MMP7 (ENSBMUG00000005974)	MMP20 (ENSBMUG00000005959)	MMP27 (ENSBMUG00000005944)	MMP8 (ENSBMUG00000005917)
Domestic yak	MODERN SPECIES	22	TRIM33 (ENSBGRG00000006076) #12	BCAS2 (ENSBGRG00000006573) #16	ENSBGRG00000006605	DENND2C (ENSBGRG00000006623) #14	AMPD1 (ENSBGRG00000006749) #15	NRAS (ENSBGRG00000006784) #17	ENSBGRG00000006823 #18	SIKE1 (ENSBGRG00000006884)	ENSBGRG00000006936	SYCP1 (ENSBGRG00000006966) #19	TSHB (ENSBGRG00000007103) #20	ENSBGRG00000007154	TSPAN2 (ENSBGRG00000007175) #21	NGF (ENSBGRG00000007446)	ENSBGRG00000007514	VANGL1 (ENSBGRG00000007582) #22	CASQ2 (ENSBGRG00000007757) #23	NHLH2 (ENSBGRG00000007908)	SLC22A15 (ENSBGRG00000007927)	ENSBGRG00000008009	MAB21L3 (ENSBGRG00000008095)	ENSBGRG00000008185	ATP1A1 (ENSBGRG00000008222)	ENSBGRG00000008748	IGSF3 (ENSBGRG00000008798)	ENSBGRG00000008897	ENSBGRG00000008942	PTGFRN (ENSBGRG00000009035)	CD101 (ENSBGRG00000009173)	TTF2 (ENSBGRG00000009266)	TRIM45 (ENSBGRG00000009569)
Bos_b	ANCESTRAL SPECIES	1	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00940000153311.a.b.a.i.b.b	ENSGT00390000014494.pb #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950.g #18	ENSGT00390000018003.a	ENSGT00390000009724.l.w.b.c.a	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000154175.i.b.l.b	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT01100000263481.n.a.a.a.a.a.a.a.a.a.b.a.a	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300
Hybrid Bos Indicus	MODERN SPECIES	22	SYT6 (ENSBIXG00005018833) #11	TRIM33 (ENSBIXG00005018947) #12	ENSBIXG00005019022	BCAS2 (ENSBIXG00005002655) #16	DENND2C (ENSBIXG00005019102) #14	AMPD1 (ENSBIXG00005019165) #15	NRAS (ENSBIXG00005019184) #17	CSDE1 (ENSBIXG00005002632) #18	SIKE1 (ENSBIXG00005020065)	ENSBIXG00005020069	SYCP1 (ENSBIXG00005003311) #19	TSHB (ENSBIXG00005020177) #20	TSPAN2 (ENSBIXG00005003349) #21	NGF (ENSBIXG00005020234)	ENSBIXG00005005532	VANGL1 (ENSBIXG00005020258) #22	CASQ2 (ENSBIXG00005020297) #23	NHLH2 (ENSBIXG00005020316)	ENSBIXG00005020331	SLC22A15 (ENSBIXG00005020361)	MAB21L3 (ENSBIXG00005003444)	ENSBIXG00005020442	ATP1A1 (ENSBIXG00005020549)	ENSBIXG00005003478	ENSBIXG00005020612	IGSF3 (ENSBIXG00005003497)	CD2 (ENSBIXG00005020730)	PTGFRN (ENSBIXG00005020799)	CD101 (ENSBIXG00005005743)	TTF2 (ENSBIXG00005020946)	TRIM45 (ENSBIXG00005006265)
Cow	MODERN SPECIES	22	OLFML3 (ENSBTAG00000011327) #10	SYT6 (ENSBTAG00000018881) #11	TRIM33 (ENSBTAG00000001499) #12	ENSBTAG00000048431	BCAS2 (ENSBTAG00000016705) #16	DENND2C (ENSBTAG00000012194) #14	AMPD1 (ENSBTAG00000011548) #15	NRAS (ENSBTAG00000046797) #17	CSDE1 (ENSBTAG00000000678) #18	SIKE1 (ENSBTAG00000015977)	ENSBTAG00000032057	SYCP1 (ENSBTAG00000032071) #19	TSHB (ENSBTAG00000006295) #20	TSPAN2 (ENSBTAG00000015961) #21	NGF (ENSBTAG00000007446)	VANGL1 (ENSBTAG00000005788) #22	CASQ2 (ENSBTAG00000011500) #23	NHLH2 (ENSBTAG00000015067)	ENSBTAG00000051199	SLC22A15 (ENSBTAG00000000664)	MAB21L3 (ENSBTAG00000001406)	ENSBTAG00000050694	ATP1A1 (ENSBTAG00000001246)	CD58 (ENSBTAG00000040131)	IGSF3 (ENSBTAG00000004849)	CD2 (ENSBTAG00000017256)	PTGFRN (ENSBTAG00000008022)	CD101 (ENSBTAG00000018203)	TTF2 (ENSBTAG00000015392)	TRIM45 (ENSBTAG00000001748)	VTCN1 (ENSBTAG00000014466)
American bison	MODERN SPECIES	3366	OLFML3 (ENSBBBG00000007646) #10	SYT6 (ENSBBBG00000011215) #11	TRIM33 (ENSBBBG00000002071) #12	ENSBBBG00000002083	ENSBBBG00000007246 #16	DENND2C (ENSBBBG00000002113) #14	AMPD1 (ENSBBBG00000011610) #15	NRAS (ENSBBBG00000011637) #17	ENSBBBG00000011846 #18	SIKE1 (ENSBBBG00000011890)	ENSBBBG00000011898	SYCP1 (ENSBBBG00000012065) #19	TSHB (ENSBBBG00000012103) #20	TSPAN2 (ENSBBBG00000012145) #21	NGF (ENSBBBG00000012158)	VANGL1 (ENSBBBG00000012189) #22	CASQ2 (ENSBBBG00000012205) #23	ENSBBBG00000012213	SLC22A15 (ENSBBBG00000012276)	MAB21L3 (ENSBBBG00000002319)	ATP1A1 (ENSBBBG00000012376)	ENSBBBG00000012393	IGSF3 (ENSBBBG00000012453)	CD2 (ENSBBBG00000012471)	PTGFRN (ENSBBBG00000002392)	CD101 (ENSBBBG00000012530)	TTF2 (ENSBBBG00000012568)	TRIM45 (ENSBBBG00000012597)	VTCN1 (ENSBBBG00000002434)	MAN1A2 (ENSBBBG00000012766)	TENT5C (ENSBBBG00000007449)
Caprinae	ANCESTRAL SPECIES	2	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494.qb #16	ENSGT00940000153311.a.b.a.i.b.b	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000155337.g.a	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498
Rambouillet Sheep	MODERN SPECIES		HIPK1 (ENSOARG00020020282) #9	OLFML3 (ENSOARG00020020553) #10	SYT6 (ENSOARG00020020593) #11	TRIM33 (ENSOARG00020020876) #12	BCAS2 (ENSOARG00020021185) #16	ENSOARG00020021275	DENND2C (ENSOARG00020021315) #14	AMPD1 (ENSOARG00020021414) #15	NRAS (ENSOARG00020021627) #17	CSDE1 (ENSOARG00020021728) #18	SIKE1 (ENSOARG00020022151)	SYCP1 (ENSOARG00020022243) #19	TSHB (ENSOARG00020022677) #20	TSPAN2 (ENSOARG00020022702) #21	NGF (ENSOARG00020022760)	VANGL1 (ENSOARG00020022787) #22	CASQ2 (ENSOARG00020022877) #23	NHLH2 (ENSOARG00020022935)	ENSOARG00020000086	SLC22A15 (ENSOARG00020000158)	MAB21L3 (ENSOARG00020000215)	ENSOARG00020000242	ATP1A1 (ENSOARG00020000332)	ENSOARG00020000728	ENSOARG00020000743	IGSF3 (ENSOARG00020000764)	CD2 (ENSOARG00020000791)	PTGFRN (ENSOARG00020000811)	TTF2 (ENSOARG00020000877)	TRIM45 (ENSOARG00020001002)	VTCN1 (ENSOARG00020001040)
Goat	MODERN SPECIES	22	SYT6 (ENSCHIG00000009583) #11	ENSCHIG00000013914	TRIM33 (ENSCHIG00000012017) #12	ENSCHIG00000014762	ENSCHIG00000022448 #16	ENSCHIG00000005596	DENND2C (ENSCHIG00000022818) #14	AMPD1 (ENSCHIG00000015980) #15	NRAS (ENSCHIG00000023175) #17	CSDE1 (ENSCHIG00000017250) #18	SIKE1 (ENSCHIG00000014644)	SYCP1 (ENSCHIG00000019909) #19	TSHB (ENSCHIG00000007505) #20	TSPAN2 (ENSCHIG00000007588) #21	NGF (ENSCHIG00000007731)	VANGL1 (ENSCHIG00000011522) #22	CASQ2 (ENSCHIG00000014376) #23	ENSCHIG00000017520	NHLH2 (ENSCHIG00000007315)	ENSCHIG00000008508	SLC22A15 (ENSCHIG00000022810)	MAB21L3 (ENSCHIG00000019025)	ENSCHIG00000005925	ATP1A1 (ENSCHIG00000017191)	ENSCHIG00000022779	IGSF3 (ENSCHIG00000003902)	CD2 (ENSCHIG00000023355)	PTGFRN (ENSCHIG00000017906)	CD101 (ENSCHIG00000025123)	TTF2 (ENSCHIG00000020785)	TRIM45 (ENSCHIG00000018385)
Siberian musk deer	MODERN SPECIES	98	HIPK1 (ENSMMSG00000011030) #9	OLFML3 (ENSMMSG00000011221) #10	SYT6 (ENSMMSG00000011265) #11	TRIM33 (ENSMMSG00000011404) #12	BCAS2 (ENSMMSG00000011440) #16	ENSMMSG00000011497	DENND2C (ENSMMSG00000011535) #14	AMPD1 (ENSMMSG00000011611) #15	NRAS (ENSMMSG00000011786) #17	CSDE1 (ENSMMSG00000011841) #18	SIKE1 (ENSMMSG00000012115)	SYCP1 (ENSMMSG00000012181) #19	TSHB (ENSMMSG00000012517) #20	TSPAN2 (ENSMMSG00000012545) #21	NGF (ENSMMSG00000012583)	VANGL1 (ENSMMSG00000012598) #22	CASQ2 (ENSMMSG00000012652) #23	NHLH2 (ENSMMSG00000012682)	SLC22A15 (ENSMMSG00000012704)	MAB21L3 (ENSMMSG00000012783)	ATP1A1 (ENSMMSG00000012825)	ENSMMSG00000012961	IGSF3 (ENSMMSG00000012976)	ENSMMSG00000013017	PTGFRN (ENSMMSG00000013024)	CD101 (ENSMMSG00000013054)	TTF2 (ENSMMSG00000013101)	TRIM45 (ENSMMSG00000013142)	VTCN1 (ENSMMSG00000013168)	MAN1A2 (ENSMMSG00000013222)	ENSMMSG00000013271
Camelidae	ANCESTRAL SPECIES	29	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000164746	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856
Alpaca	MODERN SPECIES	2051																ENSVPAG00000010370 #22	CASQ2 (ENSVPAG00000010372) #23
Arabian camel	MODERN SPECIES	35	HIPK1 (ENSCDRG00005005505) #9	OLFML3 (ENSCDRG00005005451) #10	SYT6 (ENSCDRG00005005375) #11	TRIM33 (ENSCDRG00005005176) #12	BCAS2 (ENSCDRG00005005135) #16	DENND2C (ENSCDRG00005005062) #14	AMPD1 (ENSCDRG00005004958) #15	NRAS (ENSCDRG00005004935) #17	ENSCDRG00005004604 #18	SIKE1 (ENSCDRG00005004534)	ENSCDRG00005004390	SYCP1 (ENSCDRG00005003944) #19	TSHB (ENSCDRG00005003878) #20	TSPAN2 (ENSCDRG00005003772) #21	NGF (ENSCDRG00005003718)	VANGL1 (ENSCDRG00005003686) #22	CASQ2 (ENSCDRG00005003648) #23	SLC22A15 (ENSCDRG00005003542)	MAB21L3 (ENSCDRG00005003501)	ATP1A1 (ENSCDRG00005003442)	ENSCDRG00005003393	IGSF3 (ENSCDRG00005003359)	CD2 (ENSCDRG00005003335)	PTGFRN (ENSCDRG00005003307)	CD101 (ENSCDRG00005003285)	ENSCDRG00005003266	TRIM45 (ENSCDRG00005003250)	VTCN1 (ENSCDRG00005003199)	MAN1A2 (ENSCDRG00005003168)	TENT5C (ENSCDRG00005003158)	GDAP2 (ENSCDRG00005003149)
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856
Carnivora	ANCESTRAL SPECIES	1	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000154158.l.c.a	ENSGT00940000163318	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856
Caniformia	ANCESTRAL SPECIES	2	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947.g.b #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000154158.l.c.a	ENSGT00940000163318	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00950000185047	ENSGT00940000157498
Caniformia_b	ANCESTRAL SPECIES	1	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947.g.b #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00950000185047	ENSGT00940000157498
Ursidae	ANCESTRAL SPECIES	32	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00950000185728	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947.g.b #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000154158.l.c.a	ENSGT00940000163318	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000164746	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00950000185047	ENSGT00940000157498
Ursus	ANCESTRAL SPECIES	107	ENSGT00950000185728	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947.g.b #17	ENSGT00390000016950.k.a #18	ENSGT00390000016950.l #18	ENSGT00390000018003.a	ENSGT00940000154158.l.c.a	ENSGT00940000163318	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000164746	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00950000185047	ENSGT00940000157498
Polar bear	MODERN SPECIES	209	TRIM33 (ENSUMAG00000011998) #12	ENSUMAG00000011934	BCAS2 (ENSUMAG00000011929) #16	DENND2C (ENSUMAG00000011794) #14	AMPD1 (ENSUMAG00000011730) #15	NRAS (ENSUMAG00000011722) #17	ENSUMAG00000011714 #18	ENSUMAG00000011713 #18	SIKE1 (ENSUMAG00000011701)	ENSUMAG00000011697	ENSUMAG00000011659	SYCP1 (ENSUMAG00000011531) #19	TSHB (ENSUMAG00000011510) #20	TSPAN2 (ENSUMAG00000011490) #21	NGF (ENSUMAG00000011483)	VANGL1 (ENSUMAG00000011478) #22	CASQ2 (ENSUMAG00000011472) #23	SLC22A15 (ENSUMAG00000011378)	MAB21L3 (ENSUMAG00000011357)	ATP1A1 (ENSUMAG00000011338)	ENSUMAG00000011330
American black bear	MODERN SPECIES	356																VANGL1 (ENSUAMG00000022013) #22	CASQ2 (ENSUAMG00000022012) #23	NHLH2 (ENSUAMG00000022011)	SLC22A15 (ENSUAMG00000022009)	MAB21L3 (ENSUAMG00000022007)
Giant Panda	MODERN SPECIES	11	ENSAMEG00000027179	ENSAMEG00000027662	BCAS2 (ENSAMEG00000017176) #16	DENND2C (ENSAMEG00000017165) #14	AMPD1 (ENSAMEG00000017140) #15	ENSAMEG00000028734	NRAS (ENSAMEG00000017134) #17	CSDE1 (ENSAMEG00000017129) #18	SIKE1 (ENSAMEG00000017123)	ENSAMEG00000026022	ENSAMEG00000017106	SYCP1 (ENSAMEG00000017087) #19	TSHB (ENSAMEG00000010929) #20	ENSAMEG00000010910 #21	NGF (ENSAMEG00000030308)	VANGL1 (ENSAMEG00000010898) #22	CASQ2 (ENSAMEG00000029848) #23	NHLH2 (ENSAMEG00000010851)	SLC22A15 (ENSAMEG00000026074)	MAB21L3 (ENSAMEG00000005068)	ATP1A1 (ENSAMEG00000005071)	ENSAMEG00000005165	IGSF3 (ENSAMEG00000005171)	ENSAMEG00000005177	PTGFRN (ENSAMEG00000005188)	CD101 (ENSAMEG00000005212)	ENSAMEG00000005220	TRIM45 (ENSAMEG00000005240)	VTCN1 (ENSAMEG00000005256)	ENSAMEG00000029843	MAN1A2 (ENSAMEG00000004421)
Mustelinae	ANCESTRAL SPECIES	47	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947.g.b #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000154158.l.c.a	ENSGT00940000163318	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856
Ferret	MODERN SPECIES	323									ENSMPUG00000001750	ENSMPUG00000001742 #19	ENSMPUG00000001740 #19	ENSMPUG00000001725	TSHB (ENSMPUG00000001722) #20	TSPAN2 (ENSMPUG00000001674) #21	NGF (ENSMPUG00000019389)	VANGL1 (ENSMPUG00000001670) #22	CASQ2 (ENSMPUG00000001664) #23	NHLH2 (ENSMPUG00000019387)	ENSMPUG00000001661	SLC22A15 (ENSMPUG00000001657)	ENSMPUG00000001652	MAB21L3 (ENSMPUG00000001644)	ATP1A1 (ENSMPUG00000001638)	ENSMPUG00000001632	IGSF3 (ENSMPUG00000001629)	CD2 (ENSMPUG00000001627)	PTGFRN (ENSMPUG00000001624)	CD101 (ENSMPUG00000001621)	ENSMPUG00000001606	TRIM45 (ENSMPUG00000001600)	VTCN1 (ENSMPUG00000001593)
American mink	MODERN SPECIES	111	OR2C1 (ENSNVIG00000023364)	ENSNVIG00000023365	ZNF174 (ENSNVIG00000023367)	ZNF597 (ENSNVIG00000023368)	NAA60 (ENSNVIG00000023370)	C16orf90 (ENSNVIG00000023393)	CLUAP1 (ENSNVIG00000023394)	NLRC3 (ENSNVIG00000023403)	SLX4 (ENSNVIG00000023409)	TRAP1 (ENSNVIG00000023431)	DNASE1 (ENSNVIG00000023448)	CREBBP (ENSNVIG00000023450)	ADCY9 (ENSNVIG00000023463)	SRL (ENSNVIG00000023467)	TFAP4 (ENSNVIG00000023470)	VANGL1 (ENSNVIG00000023481) #22	CASQ2 (ENSNVIG00000000050) #23	NHLH2 (ENSNVIG00000000105)	SLC22A15 (ENSNVIG00000000113)	MAB21L3 (ENSNVIG00000000128)	ATP1A1 (ENSNVIG00000000157)	ENSNVIG00000000193	IGSF3 (ENSNVIG00000000200)	CD2 (ENSNVIG00000000214)	PTGFRN (ENSNVIG00000000230)	CD101 (ENSNVIG00000000251)	TTF2 (ENSNVIG00000000301)	TRI45 (ENSNVIG00000000318)	VTCN1 (ENSNVIG00000000327)	ENSNVIG00000000362	MAN1A2 (ENSNVIG00000000375)
Canidae	ANCESTRAL SPECIES	25	ENSGT00940000157665 #11	ENSGT00940000155712.g.b.a	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947.g.a #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000154158.l.c.a	ENSGT00940000163318	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00390000013931.a.a.a.a	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000164746	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00950000185047.a.a
Canis_lupus	ANCESTRAL SPECIES	10	ENSGT00940000155712.g.b.a	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947.g.a #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000154158.l.c.a	ENSGT00950000182967.a.a.a.a.a.a.c.b.a.a	ENSGT00940000163318	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00390000013931.a.a.a.a.b	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000169805	ENSGT00940000154334.k	ENSGT00950000183010.a.a.a.b.a.a.a.a.a	ENSGT00940000157300
Dingo	MODERN SPECIES	223	BCAS2 (ENSCAFG00020000774) #16	DENND2C (ENSCAFG00020000607) #14	ENSCAFG00020000589	AMPD1 (ENSCAFG00020000496) #15	NRAS (ENSCAFG00020000486) #17	CSDE1 (ENSCAFG00020000481) #18	SIKE1 (ENSCAFG00020000472)	ENSCAFG00020000466	ENSCAFG00020000446	ENSCAFG00020000163	ENSCAFG00020021008	SYCP1 (ENSCAFG00020020995) #19	TSHB (ENSCAFG00020020987) #20	TSPAN2 (ENSCAFG00020020982) #21	NGF (ENSCAFG00020020970)	VANGL1 (ENSCAFG00020020963) #22	CASQ2 (ENSCAFG00020020924) #23	NHLH2 (ENSCAFG00020020915)	SLC22A15 (ENSCAFG00020020878)	MAB21L3 (ENSCAFG00020020870)	ATP1A1 (ENSCAFG00020020858)	ENSCAFG00020020844	IGSF3 (ENSCAFG00020020808)	CD2 (ENSCAFG00020020793)	ENSCAFG00020020788	PTGFRN (ENSCAFG00020020784)	CD101 (ENSCAFG00020020782)	ENSCAFG00020020772	TRIM45 (ENSCAFG00020020769)	ENSCAFG00020020767	VTCN1 (ENSCAFG00020020764)
Dog	MODERN SPECIES	8	BCAS2 (ENSCAFG00845024283) #16	DENND2C (ENSCAFG00845024386) #14	AMPD1 (ENSCAFG00845025118) #15	NRAS (ENSCAFG00845026380) #17	CSDE1 (ENSCAFG00845026694) #18	SIKE1 (ENSCAFG00845027120)	ENSCAFG00845027157	ENSCAFG00845027184	ENSCAFG00845027218	ENSCAFG00845027397 #19	ENSCAFG00845027680	TSHB (ENSCAFG00845027709) #20	TSPAN2 (ENSCAFG00845027766) #21	ENSCAFG00845027829	NGF (ENSCAFG00845027859)	VANGL1 (ENSCAFG00845027910) #22	CASQ2 (ENSCAFG00845028062) #23	ENSCAFG00845028114	SLC22A15 (ENSCAFG00845028198)	MAB21L3 (ENSCAFG00845028265)	ENSCAFG00845028320	ATP1A1 (ENSCAFG00845028456)	ENSCAFG00845028795	IGSF3 (ENSCAFG00845028936)	CD2 (ENSCAFG00845028984)	PTGFRN (ENSCAFG00845029002)	CD101 (ENSCAFG00845029071)	ENSCAFG00845029143	TRIM45 (ENSCAFG00845029248)	ENSCAFG00845029291	VTCN1 (ENSCAFG00845029358)
Red fox	MODERN SPECIES	16	BCAS2 (ENSVVUG00000009511) #16	DENND2C (ENSVVUG00000009535) #14	ENSVVUG00000009548	AMPD1 (ENSVVUG00000009582) #15	NRAS (ENSVVUG00000009823) #17	CSDE1 (ENSVVUG00000009890) #18	SIKE1 (ENSVVUG00000009899)	ENSVVUG00000009905	ENSVVUG00000009910	ENSVVUG00000009922	SYCP1 (ENSVVUG00000009950) #19	ENSVVUG00000010223	ENSVVUG00000010227	TSHB (ENSVVUG00000010234) #20	TSPAN2 (ENSVVUG00000010237) #21	VANGL1 (ENSVVUG00000010259) #22	CASQ2 (ENSVVUG00000010295) #23	NHLH2 (ENSVVUG00000010299)	ENSVVUG00000010302	ENSVVUG00000010311	ENSVVUG00000010324	MAB21L3 (ENSVVUG00000010333)	ENSVVUG00000010336	ATP1A1 (ENSVVUG00000010340)	CD58 (ENSVVUG00000010356)	IGSF3 (ENSVVUG00000010362)	CD2 (ENSVVUG00000010381)	PTGFRN (ENSVVUG00000010390)	CD101 (ENSVVUG00000010401)	TTF2 (ENSVVUG00000010407)	TRIM45 (ENSVVUG00000010421)
Felidae	ANCESTRAL SPECIES	10	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947.e #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000154158.l.c.a	ENSGT00940000163318	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856
Panthera	ANCESTRAL SPECIES	4	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947.e #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000154158.l.c.a	ENSGT00940000163318	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000164746	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856
Tiger	MODERN SPECIES	20																VANGL1 (ENSPTIG00000015471) #22	CASQ2 (ENSPTIG00000014576) #23	SLC22A15 (ENSPTIG00000013213)	MAB21L3 (ENSPTIG00000011945)	ATP1A1 (ENSPTIG00000020868)	IGSF3 (ENSPTIG00000018398)	SDK2 (ENSPTIG00000015074)	CPSF4L (ENSPTIG00000012676)	C17orf80 (ENSPTIG00000008684)	ENSPTIG00000006569	COG1 (ENSPTIG00000005027)	SSTR2 (ENSPTIG00000006667)	SLC39A11 (ENSPTIG00000000090)	ENSPTIG00000006657	ENSPTIG00000019658	KCNJ2 (ENSPTIG00000006640)
Panthera_a	ANCESTRAL SPECIES	11	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947.e #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000154158.l.c.a	ENSGT00940000163318	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00950000183010.a.a.a.b.a.a.b.a.b.b.a	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000164746	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856
lion	MODERN SPECIES	8	TRIM33 (ENSPLOG00000016841) #12	ENSPLOG00000016808	BCAS2 (ENSPLOG00000016764) #16	DENND2C (ENSPLOG00000016707) #14	AMPD1 (ENSPLOG00000016449) #15	NRAS (ENSPLOG00000016315) #17	CSDE1 (ENSPLOG00000015680) #18	SIKE1 (ENSPLOG00000015473)	ENSPLOG00000015461	ENSPLOG00000015234	SYCP1 (ENSPLOG00000014657) #19	TSHB (ENSPLOG00000014568) #20	TSPAN2 (ENSPLOG00000014519) #21	ENSPLOG00000014415	NGF (ENSPLOG00000014389)	VANGL1 (ENSPLOG00000014377) #22	CASQ2 (ENSPLOG00000014262) #23	NHLH2 (ENSPLOG00000014240)	SLC22A15 (ENSPLOG00000014089)	MAB21L3 (ENSPLOG00000014017)	ATP1A1 (ENSPLOG00000013723)	ENSPLOG00000013611	IGSF3 (ENSPLOG00000013549)	CD2 (ENSPLOG00000013510)	PTGFRN (ENSPLOG00000013463)	CD101 (ENSPLOG00000013429)	ENSPLOG00000013203	TRIM45 (ENSPLOG00000013060)	VTCN1 (ENSPLOG00000012889)	MAN1A2 (ENSPLOG00000012755)	TENT5C (ENSPLOG00000012735)
leopard	MODERN SPECIES	31	SYT6 (ENSPPRG00000014396) #11	TRIM33 (ENSPPRG00000012753) #12	BCAS2 (ENSPPRG00000012152) #16	DENND2C (ENSPPRG00000011320) #14	AMPD1 (ENSPPRG00000008277) #15	ENSPPRG00000007102 #17	CSDE1 (ENSPPRG00000006747) #18	SIKE1 (ENSPPRG00000001473)	ENSPPRG00000001280	ENSPPRG00000000888	SYCP1 (ENSPPRG00000023786) #19	TSHB (ENSPPRG00000012835) #20	TSPAN2 (ENSPPRG00000012267) #21	ENSPPRG00000016776	NGF (ENSPPRG00000016689)	VANGL1 (ENSPPRG00000010871) #22	CASQ2 (ENSPPRG00000009697) #23	NHLH2 (ENSPPRG00000016591)	SLC22A15 (ENSPPRG00000008983)	MAB21L3 (ENSPPRG00000008518)	ATP1A1 (ENSPPRG00000008177)	IGSF3 (ENSPPRG00000004364)	CD2 (ENSPPRG00000003530)	PTGFRN (ENSPPRG00000003305)	CD101 (ENSPPRG00000003135)	ENSPPRG00000002352	TRIM45 (ENSPPRG00000001987)	VTCN1 (ENSPPRG00000001120)	MAN1A2 (ENSPPRG00000000605)	TENT5C (ENSPPRG00000016270)	GDAP2 (ENSPPRG00000000210)
Cat	MODERN SPECIES	239	OLFML3 (ENSFCAG00000009243) #10	SYT6 (ENSFCAG00000006734) #11	TRIM33 (ENSFCAG00000038306) #12	BCAS2 (ENSFCAG00000010507) #16	DENND2C (ENSFCAG00000010508) #14	AMPD1 (ENSFCAG00000010509) #15	NRAS (ENSFCAG00000037994) #17	CSDE1 (ENSFCAG00000029266) #18	SIKE1 (ENSFCAG00000031592)	ENSFCAG00000041311	ENSFCAG00000028538	SYCP1 (ENSFCAG00000023028) #19	TSHB (ENSFCAG00000010405) #20	TSPAN2 (ENSFCAG00000029385) #21	NGF (ENSFCAG00000045820)	VANGL1 (ENSFCAG00000010493) #22	CASQ2 (ENSFCAG00000025977) #23	NHLH2 (ENSFCAG00000028313)	SLC22A15 (ENSFCAG00000022423)	MAB21L3 (ENSFCAG00000031670)	ATP1A1 (ENSFCAG00000013378)	CD58 (ENSFCAG00000025590)	IGSF3 (ENSFCAG00000011343)	CD2 (ENSFCAG00000001976)	PTGFRN (ENSFCAG00000001977)	ENSFCAG00000051359	CD101 (ENSFCAG00000001979)	TTF2 (ENSFCAG00000001981)	TRIM45 (ENSFCAG00000005204)	VTCN1 (ENSFCAG00000009689)	MAN1A2 (ENSFCAG00000019000)
Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494.ob #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856
Equus	ANCESTRAL SPECIES	3	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494.nb.b #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000165376	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856
Horse	MODERN SPECIES	26	HIPK1 (ENSECAG00000015193) #9	OLFML3 (ENSECAG00000013439) #10	SYT6 (ENSECAG00000010444) #11	TRIM33 (ENSECAG00000021249) #12	ENSECAG00000037018	DENND2C (ENSECAG00000019594) #14	AMPD1 (ENSECAG00000014907) #15	NRAS (ENSECAG00000013942) #17	CSDE1 (ENSECAG00000020885) #18	SIKE1 (ENSECAG00000019395)	ENSECAG00000015617	SYCP1 (ENSECAG00000013010) #19	TSHB (ENSECAG00000045218) #20	TSPAN2 (ENSECAG00000010966) #21	NGF (ENSECAG00000010553)	VANGL1 (ENSECAG00000008137) #22	CASQ2 (ENSECAG00000021854) #23	NHLH2 (ENSECAG00000030954)	SLC22A15 (ENSECAG00000020117)	MAB21L3 (ENSECAG00000019090)	ATP1A1 (ENSECAG00000024623)	ENSECAG00000056436	ENSECAG00000057106	CD2 (ENSECAG00000019437)	IGSF3 (ENSECAG00000022378)	PTGFRN (ENSECAG00000017101)	CD101 (ENSECAG00000017048)	TTF2 (ENSECAG00000012474)	TRIM45 (ENSECAG00000010259)	VTCN1 (ENSECAG00000008749)	MAN1A2 (ENSECAG00000019681)
Donkey	MODERN SPECIES	7	OLFML3 (ENSEASG00005005573) #10	SYT6 (ENSEASG00005005575) #11	TRIM33 (ENSEASG00005005657) #12	ENSEASG00005006265	BCAS2 (ENSEASG00005006268) #16	DENND2C (ENSEASG00005006273) #14	AMPD1 (ENSEASG00005006275) #15	NRAS (ENSEASG00005006279) #17	CSDE1 (ENSEASG00005006284) #18	SIKE1 (ENSEASG00005034759)	ENSEASG00005006296	SYCP1 (ENSEASG00005006304) #19	TSHB (ENSEASG00005006325) #20	TSPAN2 (ENSEASG00005006328) #21	NGF (ENSEASG00005006332)	VANGL1 (ENSEASG00005006335) #22	CASQ2 (ENSEASG00005006338) #23	NHLH2 (ENSEASG00005031693)	SLC22A15 (ENSEASG00005006345)	MAB21L3 (ENSEASG00005006347)	ATP1A1 (ENSEASG00005006353)	ENSEASG00005006357	IGSF3 (ENSEASG00005006358)	CD2 (ENSEASG00005006361)	PTGFRN (ENSEASG00005006364)	CD101 (ENSEASG00005006367)	ENSEASG00005006374	TRIM45 (ENSEASG00005006386)	VTCN1 (ENSEASG00005006388)	MAN1A2 (ENSEASG00005006389)	TENT5C (ENSEASG00005033293)
Chiroptera	ANCESTRAL SPECIES	38	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494.ob #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856
Megabat	MODERN SPECIES	2360																VANGL1 (ENSPVAG00000012685) #22	CASQ2 (ENSPVAG00000012687) #23	NHLH2 (ENSPVAG00000012688)
Microchiroptera	ANCESTRAL SPECIES	35	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494.ob #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856
Microbat	DUPLICATION
Microbat	MODERN SPECIES	1038	HIPK1 (ENSMLUG00000007488) #9	OLFML3 (ENSMLUG00000007520) #10	ENSMLUG00000022748	SYT6 (ENSMLUG00000009931) #11	TRIM33 (ENSMLUG00000013663) #12	ENSMLUG00000005653 #16	DENND2C (ENSMLUG00000005656) #14	AMPD1 (ENSMLUG00000005668) #15	NRAS (ENSMLUG00000022354) #17	CSDE1 (ENSMLUG00000005681) #18	SIKE1 (ENSMLUG00000005689)	SYCP1 (ENSMLUG00000005695) #19	TSHB (ENSMLUG00000007094) #20	TSPAN2 (ENSMLUG00000007100) #21	NGF (ENSMLUG00000024754)	ENSMLUG00000015968 #22	ENSMLUG00000027389 #23
Microbat	MODERN SPECIES	1666																ENSMLUG00000029036 #22	ENSMLUG00000015979 #23	NHLH2 (ENSMLUG00000015989)	SLC22A15 (ENSMLUG00000027759)
Greater horseshoe bat	MODERN SPECIES	14	HIPK1 (ENSRFEG00010014811) #9	OLFML3 (ENSRFEG00010015201) #10	SYT6 (ENSRFEG00010015280) #11	TRIM33 (ENSRFEG00010015569) #12	ENSRFEG00010015679 #16	DENND2C (ENSRFEG00010015796) #14	AMPD1 (ENSRFEG00010015922) #15	NRAS (ENSRFEG00010015972) #17	CSDE1 (ENSRFEG00010016045) #18	SIKE1 (ENSRFEG00010016146)	ENSRFEG00010016255	SYCP1 (ENSRFEG00010016297) #19	TSHB (ENSRFEG00010017176) #20	TSPAN2 (ENSRFEG00010017235) #21	NGF (ENSRFEG00010017324)	VANGL1 (ENSRFEG00010017347) #22	CASQ2 (ENSRFEG00010017384) #23	NHLH2 (ENSRFEG00010017414)	SLC22A15 (ENSRFEG00010017434)	MAB21L3 (ENSRFEG00010017519)	ATP1A1 (ENSRFEG00010017578)	ENSRFEG00010017926	IGSF3 (ENSRFEG00010017979)	CD2 (ENSRFEG00010018050)	PTGFRN (ENSRFEG00010018081)	CD101 (ENSRFEG00010018120)	ENSRFEG00010018150	ENSRFEG00010018175	TRIM45 (ENSRFEG00010018200)	VTCN1 (ENSRFEG00010018302)	MAN1A2 (ENSRFEG00010018506)
Eulipotyphla	ANCESTRAL SPECIES	987																ENSGT00390000012496.a #22	ENSGT00390000019377.b #23
Common shrew	MODERN SPECIES	5334																VANGL1 (ENSSARG00000012740) #22	CASQ2 (ENSSARG00000012749) #23
Hedgehog	MODERN SPECIES	6836																VANGL1 (ENSEEUG00000003736) #22	CASQ2 (ENSEEUG00000003764) #23
Atlantogenata	ANCESTRAL SPECIES	26	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336
Xenarthra	ANCESTRAL SPECIES	110	ENSGT00940000158175 #8	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00390000016950.f #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602
Sloth	MODERN SPECIES	6083																VANGL1 (ENSCHOG00000012585) #22	CASQ2 (ENSCHOG00000012595) #23
Armadillo	MODERN SPECIES	1989	HIPK1 (ENSDNOG00000015792) #9	OLFML3 (ENSDNOG00000043382) #10	SYT6 (ENSDNOG00000048919) #11	TRIM33 (ENSDNOG00000007055) #12	BCAS2 (ENSDNOG00000018484) #16	DENND2C (ENSDNOG00000045848) #14	AMPD1 (ENSDNOG00000010259) #15	CSDE1 (ENSDNOG00000010287) #18	SIKE1 (ENSDNOG00000011517)	ENSDNOG00000034800	SYCP1 (ENSDNOG00000011716) #19	TSHB (ENSDNOG00000003773) #20	TSPAN2 (ENSDNOG00000045906) #21	ENSDNOG00000044398	NGF (ENSDNOG00000002008)	VANGL1 (ENSDNOG00000011942) #22	CASQ2 (ENSDNOG00000033147) #23	NHLH2 (ENSDNOG00000008961)
Afrotheria	ANCESTRAL SPECIES	31	ENSGT00940000158175 #8	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336
Tenrec	MODERN SPECIES	6661																VANGL1 (ENSETEG00000014874) #22	CASQ2 (ENSETEG00000014876) #23
Afrotheria_a	ANCESTRAL SPECIES	31	ENSGT00940000158175 #8	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947 #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00940000155177.b	ENSGT01030000234540.E	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336
Elephant	MODERN SPECIES	26	SYT6 (ENSLAFG00000013416) #11	ENSLAFG00000026214	TRIM33 (ENSLAFG00000001666) #12	BCAS2 (ENSLAFG00000003183) #16	DENND2C (ENSLAFG00000003184) #14	AMPD1 (ENSLAFG00000007144) #15	NRAS (ENSLAFG00000020706) #17	CSDE1 (ENSLAFG00000007150) #18	SIKE1 (ENSLAFG00000010502)	ENSLAFG00000028744	ENSLAFG00000030508	TSHB (ENSLAFG00000030671) #20	TSPAN2 (ENSLAFG00000006453) #21	NGF (ENSLAFG00000028282)	ENSLAFG00000022285	VANGL1 (ENSLAFG00000003272) #22	CASQ2 (ENSLAFG00000003274) #23	NHLH2 (ENSLAFG00000007456)	SLC22A15 (ENSLAFG00000004144)	MAB21L3 (ENSLAFG00000023352)	ATP1A1 (ENSLAFG00000015690)	IGSF3 (ENSLAFG00000000958)	CD2 (ENSLAFG00000014389)	PTGFRN (ENSLAFG00000005517)	CD101 (ENSLAFG00000005521)	ENSLAFG00000006808	TRIM45 (ENSLAFG00000005156)	VTCN1 (ENSLAFG00000006818)	MAN1A2 (ENSLAFG00000017263)	TENT5C (ENSLAFG00000014696)	GDAP2 (ENSLAFG00000012098)
Hyrax	MODERN SPECIES	5645																VANGL1 (ENSPCAG00000000852) #22	CASQ2 (ENSPCAG00000000883) #23
Marsupialia	ANCESTRAL SPECIES	2	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947.x #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT00960000186961	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856
Marsupialia_b	ANCESTRAL SPECIES	1	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947.x #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT00960000186961	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856
Diprotodontia	ANCESTRAL SPECIES	5	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947.x #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT00960000186961	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856
Diprotodontia_a	ANCESTRAL SPECIES	6	ENSGT00940000155356 #9	ENSGT00940000158083 #10	ENSGT00940000157665 #11	ENSGT00940000156361.B #12	ENSGT00390000014494 #16	ENSGT00950000182931.B.a.b #14	ENSGT00950000183011.c.a.a #15	ENSGT00940000158947.x #17	ENSGT00390000016950 #18	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368 #19	ENSGT00940000158152 #20	ENSGT00940000157504 #21	ENSGT00390000007725.A.b	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000155177.b	ENSGT00960000186961	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856
koala	MODERN SPECIES	4	OLFML3 (ENSPCIG00000014301) #10	SYT6 (ENSPCIG00000013436) #11	TRIM33 (ENSPCIG00000003619) #12	BCAS2 (ENSPCIG00000025108) #16	DENND2C (ENSPCIG00000025107) #14	AMPD1 (ENSPCIG00000022674) #15	NRAS (ENSPCIG00000022594) #17	CSDE1 (ENSPCIG00000022587) #18	SIKE1 (ENSPCIG00000022581)	ENSPCIG00000022577	SYCP1 (ENSPCIG00000022572) #19	TSHB (ENSPCIG00000022570) #20	TSPAN2 (ENSPCIG00000022568) #21	ENSPCIG00000022566	NGF (ENSPCIG00000028939)	VANGL1 (ENSPCIG00000001310) #22	CASQ2 (ENSPCIG00000001270) #23	NHLH2 (ENSPCIG00000031517)	SLC22A15 (ENSPCIG00000033801)	MAB21L3 (ENSPCIG00000010827)	ATP1A1 (ENSPCIG00000004151)	ENSPCIG00000005860	IGSF3 (ENSPCIG00000005858)	ENSPCIG00000031241	ENSPCIG00000033767	PTGFRN (ENSPCIG00000003461)	CD101 (ENSPCIG00000003473)	TTF2 (ENSPCIG00000003483)	TRIM45 (ENSPCIG00000003500)	VTCN1 (ENSPCIG00000003514)	MAN1A2 (ENSPCIG00000023762)
Common wonbat	MODERN SPECIES	1021			BCAS2 (ENSVURG00010009712) #16	DENND2C (ENSVURG00010009700) #14	AMPD1 (ENSVURG00010009682) #15	NRAS (ENSVURG00010009675) #17	CSDE1 (ENSVURG00010009236) #18	SIKE1 (ENSVURG00010009209)	ENSVURG00010008750	ENSVURG00010008707 #19	TSHB (ENSVURG00010008697) #20	TSPAN2 (ENSVURG00010008617) #21	ENSVURG00010008604	NGF (ENSVURG00010008601)	ENSVURG00010008585	VANGL1 (ENSVURG00010008571) #22	CASQ2 (ENSVURG00010008538) #23	NHLH2 (ENSVURG00010008530)	SLC22A15 (ENSVURG00010008519)	MAB21L3 (ENSVURG00010008509)	ENSVURG00010008506	ATP1A1 (ENSVURG00010008458)	ENSVURG00010008439	IGSF3 (ENSVURG00010008429)	ENSVURG00010008419	PTGFRN (ENSVURG00010008404)	CD101 (ENSVURG00010008389)	TTF2 (ENSVURG00010008350)	TRIM45 (ENSVURG00010008336)	VTCN1 (ENSVURG00010008325)	MAN1A2 (ENSVURG00010008291)
Wallaby	MODERN SPECIES	8194																VANGL1 (ENSMEUG00000008370) #22
Tasmanian devil	MODERN SPECIES	3	HIPK1 (ENSSHAG00000013450) #9	OLFML3 (ENSSHAG00000031891) #10	SYT6 (ENSSHAG00000014204) #11	TRIM33 (ENSSHAG00000005991) #12	DENND2C (ENSSHAG00000008636) #14	ENSSHAG00000008467 #16	CSDE1 (ENSSHAG00000009831) #18	AMPD1 (ENSSHAG00000009444) #15	SIKE1 (ENSSHAG00000026566)	ENSSHAG00000010518	SYCP1 (ENSSHAG00000010670) #19	TSHB (ENSSHAG00000011393) #20	TSPAN2 (ENSSHAG00000032135) #21	ENSSHAG00000011855	NGF (ENSSHAG00000013026)	VANGL1 (ENSSHAG00000014752) #22	CASQ2 (ENSSHAG00000014881) #23	NHLH2 (ENSSHAG00000015472)	ENSSHAG00000026266	SLC22A15 (ENSSHAG00000015912)	MAB21L3 (ENSSHAG00000022094)	ATP1A1 (ENSSHAG00000016979)	ENSSHAG00000017292	IGSF3 (ENSSHAG00000027689)	ENSSHAG00000017759	PTGFRN (ENSSHAG00000018051)	CD101 (ENSSHAG00000018141)	TTF2 (ENSSHAG00000018195)	TRIM45 (ENSSHAG00000018250)	VTCN1 (ENSSHAG00000018283)	MAN1A2 (ENSSHAG00000006188)
Platypus	MODERN SPECIES	7	ENSOANG00000005826	NDUFB4 (ENSOANG00000046502)	ENSOANG00000038378	LRRC58 (ENSOANG00000042022)	ENSOANG00000043528	GSK3B (ENSOANG00000001670)	ENSOANG00000050472	ENSOANG00000041372	COX17 (ENSOANG00000037632)	ENSOANG00000048908	PLA1A (ENSOANG00000048291)	ENSOANG00000040539	ADPRH (ENSOANG00000037344)	ENSOANG00000050911	POGLUT1 (ENSOANG00000044666)	VANGL1 (ENSOANG00000042017) #22	ENSOANG00000021966 #23	NHLH2 (ENSOANG00000009820)	SLC22A15 (ENSOANG00000044054)	MAB21L3 (ENSOANG00000002511)	ATP1A1 (ENSOANG00000037687)	ENSOANG00000040389	ENSOANG00000040078	IGSF3 (ENSOANG00000048085)	TMEM39A (ENSOANG00000047837)	ENSOANG00000039096	B4GALT4 (ENSOANG00000044285)	UPK1B (ENSOANG00000049892)	IGSF11 (ENSOANG00000044874)	HSD17B7 (ENSOANG00000048102)	RGS5 (ENSOANG00000044194)
Sauria	ANCESTRAL SPECIES	2	ENSGT00940000158617	ENSGT00730000111265	ENSGT01030000235231	ENSGT00940000158516	ENSGT00940000165328	ENSGT00940000156392.a	ENSGT00940000154487.A	ENSGT00940000160779	ENSGT00940000159458	ENSGT00940000165782	ENSGT00940000166068	ENSGT00940000158378	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00940000164584	ENSGT00390000002329	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784
Archelosauria	ANCESTRAL SPECIES	30	ENSGT00940000158617	ENSGT01030000235231	ENSGT00730000111265	ENSGT00940000158516	ENSGT00940000165328	ENSGT00940000156392.a	ENSGT00940000154487.A	ENSGT00940000160779	ENSGT00940000159458	ENSGT00940000165782	ENSGT00940000166068	ENSGT00940000158378	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT01030000235556	ENSGT00510000049596	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00940000164584	ENSGT00390000002329	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556
Archosauria	ANCESTRAL SPECIES	2	ENSGT00940000158617	ENSGT01030000235231	ENSGT00730000111265	ENSGT00940000158516	ENSGT00940000165328	ENSGT00940000156392.a	ENSGT00940000154487.A	ENSGT00940000160779	ENSGT00940000159458	ENSGT00940000165782	ENSGT00940000166068	ENSGT00940000158378	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT01030000235556	ENSGT00510000049596	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00940000164584	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784
Aves	ANCESTRAL SPECIES		ENSGT00940000159661	ENSGT00940000158617	ENSGT00730000111265	ENSGT01030000235231	ENSGT00940000158516	ENSGT00940000156392.a	ENSGT00940000154487.A	ENSGT00940000160779	ENSGT00940000159458	ENSGT00940000165782	ENSGT00940000166068	ENSGT00940000158378	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT01030000235556	ENSGT00510000049596	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00940000164584	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784
Neognathae	ANCESTRAL SPECIES	1	ENSGT00940000159661	ENSGT00940000158617	ENSGT01030000235231	ENSGT00730000111265	ENSGT00940000158516	ENSGT00940000156392.a	ENSGT00940000154487.A	ENSGT00940000160779	ENSGT00940000159458	ENSGT00940000165782	ENSGT00940000166068	ENSGT00940000158378	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT01030000235556	ENSGT00510000049596	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00940000164584	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784
Galloanserae	ANCESTRAL SPECIES	1	ENSGT00940000159661	ENSGT00940000158617	ENSGT01030000235231	ENSGT00730000111265	ENSGT00940000158516	ENSGT00940000156392.a	ENSGT00940000154487.A	ENSGT00940000160779	ENSGT00940000159458	ENSGT00940000165782	ENSGT00940000166068	ENSGT00940000158378	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT01030000235556	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00940000164584	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784
Anatidae	ANCESTRAL SPECIES	6	ENSGT00940000159661	ENSGT00940000158617	ENSGT01030000235231	ENSGT00730000111265	ENSGT00940000158516	ENSGT00940000156392.a	ENSGT00940000168076	ENSGT00940000160779	ENSGT00940000159458	ENSGT00940000165782	ENSGT00940000166068	ENSGT00940000158378	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00940000164584	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784	ENSGT00390000007133
Pink-footed goose	MODERN SPECIES	5	DRD3 (ENSABRG00000009806)	ZBTB20 (ENSABRG00000009810)	GAP43 (ENSABRG00000009848)	ENSABRG00000009850	LSAMP (ENSABRG00000009862)	IGSF11 (ENSABRG00000009943)	ENSABRG00000009952	UPK1B (ENSABRG00000009963)	ARHGAP31 (ENSABRG00000010024)	ENSABRG00000010033	ENSABRG00000010037	B4GALT4 (ENSABRG00000010048)	TMEM39A (ENSABRG00000010057)	ENSABRG00000010067	CHD1L (ENSABRG00000010095)	VANGL1 (ENSABRG00000010157) #22	CASQ2 (ENSABRG00000010169) #23	NHLH2 (ENSABRG00000010180)	SLC22A15 (ENSABRG00000010193)	ATP1A1 (ENSABRG00000010220)	ENSABRG00000010256	PLA1A (ENSABRG00000010260)	POPDC2 (ENSABRG00000010264)	ENSABRG00000010266	CFAP91 (ENSABRG00000010269)	GSK3B (ENSABRG00000010305)	ENSABRG00000010329	GPR156 (ENSABRG00000010338)	LRRC58 (ENSABRG00000010349)	FSTL1 (ENSABRG00000010360)	NDUFB4 (ENSABRG00000010370)
Duck	MODERN SPECIES		QTRT2 (ENSAPLG00000001359)	DRD3 (ENSAPLG00000002289)	ZBTB20 (ENSAPLG00000002762)	ENSAPLG00000028503	GAP43 (ENSAPLG00000002345)	LSAMP (ENSAPLG00000010325)	IGSF11 (ENSAPLG00000008337)	UPK1B (ENSAPLG00000008825)	ARHGAP31 (ENSAPLG00000009089)	ENSAPLG00000025438	ENSAPLG00000009258	B4GALT4 (ENSAPLG00000009388)	TMEM39A (ENSAPLG00000009675)	ENSAPLG00000009803	CHD1L (ENSAPLG00000009976)	VANGL1 (ENSAPLG00000011029) #22	CASQ2 (ENSAPLG00000011267) #23	NHLH2 (ENSAPLG00000023891)	SLC22A15 (ENSAPLG00000012634)	MAB21L3 (ENSAPLG00000012622)	ATP1A1 (ENSAPLG00000011285)	ENSAPLG00000011249	PLA1A (ENSAPLG00000025714)	POPDC2 (ENSAPLG00000019599)	ENSAPLG00000011097	CFAP91 (ENSAPLG00000011017)	GSK3B (ENSAPLG00000007990)	GPR156 (ENSAPLG00000019941)	LRRC58 (ENSAPLG00000029420)	FSTL1 (ENSAPLG00000027059)	NDUFB4 (ENSAPLG00000017845)
Phasianidae	ANCESTRAL SPECIES		ENSGT00940000159661	ENSGT00940000158617	ENSGT01030000235231	ENSGT00730000111265	ENSGT00940000158516	ENSGT00940000156392.a	ENSGT00940000154487.A	ENSGT00940000160779	ENSGT00940000159458	ENSGT00940000165782	ENSGT00940000166068	ENSGT00940000158378	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT01030000235556	ENSGT00940000154840.b	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00940000164584	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784	ENSGT00390000007133
Phasianidae_b	ANCESTRAL SPECIES		ENSGT00940000159661	ENSGT00940000158617	ENSGT01030000235231	ENSGT00730000111265	ENSGT00940000158516	ENSGT00940000156392.a	ENSGT00940000154487.A	ENSGT00940000160779	ENSGT00940000159458	ENSGT00940000165782	ENSGT00940000166068	ENSGT00940000158378	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT01030000235556	ENSGT00940000154840.b	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00940000164584	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784	ENSGT00390000007133
Chicken	MODERN SPECIES		QTRT2 (ENSGALG00010007333)	DRD3 (ENSGALG00010006537)	ZBTB20 (ENSGALG00010006517)	ENSGALG00010006694	GAP43 (ENSGALG00010006492)	LSAMP (ENSGALG00010006446)	IGSF11 (ENSGALG00010025653)	UPK1B (ENSGALG00010025594)	ARHGAP31 (ENSGALG00010025574)	B3GAT1L (ENSGALG00010025548)	B4GALT3 (ENSGALG00010025531)	B4GALT4 (ENSGALG00010025523)	TMEM39A (ENSGALG00010025481)	ENSGALG00010025465	CHD1L (ENSGALG00010025448)	VANGL1 (ENSGALG00010025428) #22	CASQ2 (ENSGALG00010025418) #23	NHLH2 (ENSGALG00010025220)	SLC22A15 (ENSGALG00010025400)	MAB21L3 (ENSGALG00010025382)	ENSGALG00010025350	ATP1A1 (ENSGALG00010025292)	PLA1A (ENSGALG00010025182)	POPDC2 (ENSGALG00010025168)	COX17 (ENSGALG00010025147)	CFAP91 (ENSGALG00010025138)	GSK3A (ENSGALG00010025103)	GPR156 (ENSGALG00010025060)	LRRC58 (ENSGALG00010026272)	FSTL1 (ENSGALG00010025032)	NDUFB4 (ENSGALG00010024994)
Turkey	MODERN SPECIES		QTRT2 (ENSMGAG00000014322)	DRD3 (ENSMGAG00000014321)	ZBTB20 (ENSMGAG00000014320)	GAP43 (ENSMGAG00000014319)	LSAMP (ENSMGAG00000014318)	IGSF11 (ENSMGAG00000014313)	ENSMGAG00000019562	UPK1B (ENSMGAG00000014315)	ENSMGAG00000014314	ENSMGAG00000014312	ENSMGAG00000014308	B4GALT4 (ENSMGAG00000014307)	ENSMGAG00000014306	ENSMGAG00000020983	ENSMGAG00000014304	VANGL1 (ENSMGAG00000014303) #22	CASQ2 (ENSMGAG00000014302) #23	SLC22A15 (ENSMGAG00000014301)	MAB21L3 (ENSMGAG00000014300)	ATP1A1 (ENSMGAG00000014297)	PLA1A (ENSMGAG00000014293)	POPDC2 (ENSMGAG00000014291)	ENSMGAG00000014290	CFAP91 (ENSMGAG00000014289)	GSK3B (ENSMGAG00000014288)	LRRC58 (ENSMGAG00000014285)	FSTL1 (ENSMGAG00000014283)	ENSMGAG00000016069	HGD (ENSMGAG00000014280)	RABL3 (ENSMGAG00000014276)	GTF2E1 (ENSMGAG00000014272)
Japanese quail	MODERN SPECIES		QTRT2 (ENSCJPG00005017431)	DRD3 (ENSCJPG00005017429)	ZBTB20 (ENSCJPG00005017428)	ENSCJPG00005017424	GAP43 (ENSCJPG00005017422)	LSAMP (ENSCJPG00005017420)	IGSF11 (ENSCJPG00005017409)	UPK1B (ENSCJPG00005017408)	ARHGAP31 (ENSCJPG00005017407)	ENSCJPG00005017405	ENSCJPG00005017403	B4GALT4 (ENSCJPG00005017401)	TMEM39A (ENSCJPG00005017400)	ENSCJPG00005017399	CHD1L (ENSCJPG00005017397)	VANGL1 (ENSCJPG00005017394) #22	CASQ2 (ENSCJPG00005017386) #23	NHLH2 (ENSCJPG00005017385)	SLC22A15 (ENSCJPG00005017383)	MAB21L3 (ENSCJPG00005017382)	ENSCJPG00005017379	ATP1A1 (ENSCJPG00005017374)	PLA1A (ENSCJPG00005017372)	POPDC2 (ENSCJPG00005017369)	ENSCJPG00005017368	CFAP91 (ENSCJPG00005017367)	GSK3B (ENSCJPG00005017366)	GPR156 (ENSCJPG00005017365)	LRRC58 (ENSCJPG00005017363)	FSTL1 (ENSCJPG00005017362)	NDUFB4 (ENSCJPG00005017357)
Neognathae_b	ANCESTRAL SPECIES		ENSGT00530000063679.A	ENSGT00940000159661	ENSGT00940000158617	ENSGT00730000111265	ENSGT01030000235231	ENSGT00940000158516	ENSGT00940000156392.a	ENSGT00940000160779	ENSGT00940000159458	ENSGT00940000165782	ENSGT00940000166068	ENSGT00940000158378	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT01030000235556	ENSGT00510000049596	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00940000164584	ENSGT00390000002329	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556
Passeriformes	ANCESTRAL SPECIES	1	ENSGT00530000063679.A	ENSGT00940000159661	ENSGT00940000158617	ENSGT00730000111265	ENSGT01030000235231	ENSGT00940000158516	ENSGT00940000156392.a	ENSGT00940000160779	ENSGT00940000159458	ENSGT00940000165782	ENSGT00940000166068	ENSGT00940000158378	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT01030000235556	ENSGT00510000049596	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00940000164584	ENSGT00390000002329	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556
Great tit	MODERN SPECIES		QTRT2 (ENSPMJG00000010949)	DRD3 (ENSPMJG00000010947)	ZBTB20 (ENSPMJG00000010924)	ENSPMJG00000010908	GAP43 (ENSPMJG00000010900)	LSAMP (ENSPMJG00000010853)	IGSF11 (ENSPMJG00000010812)	UPK1B (ENSPMJG00000010779)	ARHGAP31 (ENSPMJG00000010778)	ENSPMJG00000010776	ENSPMJG00000010775	B4GALT4 (ENSPMJG00000010774)	TMEM39A (ENSPMJG00000010742)	ENSPMJG00000010739	CHD1L (ENSPMJG00000010736)	VANGL1 (ENSPMJG00000010735) #22	CASQ2 (ENSPMJG00000010731) #23	NHLH2 (ENSPMJG00000010729)	SLC22A15 (ENSPMJG00000010688)	MAB21L3 (ENSPMJG00000010685)	ATP1A1 (ENSPMJG00000010677)	ENSPMJG00000010675	PLA1A (ENSPMJG00000010672)	POPDC2 (ENSPMJG00000010671)	COX17 (ENSPMJG00000010664)	CFAP91 (ENSPMJG00000010605)	GSK3B (ENSPMJG00000010600)	GPR156 (ENSPMJG00000010598)	LRRC58 (ENSPMJG00000010597)	ENSPMJG00000010530	FSTL1 (ENSPMJG00000010529)
Passeriformes_d	ANCESTRAL SPECIES	1	ENSGT00530000063679.A	ENSGT00940000159661	ENSGT00940000158617	ENSGT00730000111265	ENSGT01030000235231	ENSGT00940000158516	ENSGT00940000156392.a	ENSGT00940000160779	ENSGT00940000159458	ENSGT00940000165782	ENSGT00940000166068	ENSGT00940000158378	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT01030000235556	ENSGT00510000049596	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00940000164584	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784
Passeriformes_g	ANCESTRAL SPECIES	25	ENSGT00530000063679.A	ENSGT00940000159661	ENSGT00940000158617	ENSGT00730000111265	ENSGT01030000235231	ENSGT00940000158516	ENSGT00940000156392.a	ENSGT00940000160779	ENSGT00940000159458	ENSGT00940000165782	ENSGT00940000166068	ENSGT00940000158378	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT01030000235556	ENSGT00510000049596	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00940000164584	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784
Passeroidea	ANCESTRAL SPECIES	5	ENSGT00530000063679.A	ENSGT00940000159661	ENSGT00940000158617	ENSGT00730000111265	ENSGT01030000235231	ENSGT00940000158516	ENSGT00940000156392.a	ENSGT00940000160779	ENSGT00940000159458	ENSGT00940000165782	ENSGT00940000166068	ENSGT00940000158378	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT01030000235556	ENSGT00510000049596	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00940000164584	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784
Zebra finch	MODERN SPECIES		GAP43 (ENSTGUG00000029244)	ENSTGUG00000013403	LSAMP (ENSTGUG00000013402)	ENSTGUG00000022659	ENSTGUG00000019556	ENSTGUG00000027649	IGSF11 (ENSTGUG00000013400)	UPK1B (ENSTGUG00000013399)	ARHGAP31 (ENSTGUG00000020207)	ENSTGUG00000013397	ENSTGUG00000013396	B4GALT4 (ENSTGUG00000013395)	TMEM39A (ENSTGUG00000013394)	ENSTGUG00000013393	CHD1L (ENSTGUG00000013392)	VANGL1 (ENSTGUG00000013391) #22	CASQ2 (ENSTGUG00000013390) #23	NHLH2 (ENSTGUG00000013389)	ATP1A1 (ENSTGUG00000020927)	SLC22A15 (ENSTGUG00000013386)	ENSTGUG00000020500	ENSTGUG00000013385	PLA1A (ENSTGUG00000013384)	POPDC2 (ENSTGUG00000013383)	ENSTGUG00000029427	CFAP91 (ENSTGUG00000013381)	GSK3B (ENSTGUG00000013380)	GPR156 (ENSTGUG00000013379)	LRRC58 (ENSTGUG00000022807)	FSTL1 (ENSTGUG00000013377)	NDUFB4 (ENSTGUG00000013376)
Common canary	MODERN SPECIES	4	ENSSCAG00000009392	ZBTB20 (ENSSCAG00000009402)	GAP43 (ENSSCAG00000009424)	ENSSCAG00000009430	LSAMP (ENSSCAG00000009446)	ENSSCAG00000009462	IGSF11 (ENSSCAG00000009501)	UPK1B (ENSSCAG00000009521)	ARHGAP31 (ENSSCAG00000009531)	ENSSCAG00000009539	ENSSCAG00000009571	B4GALT4 (ENSSCAG00000009577)	TMEM39A (ENSSCAG00000009590)	ENSSCAG00000009597	CHD1L (ENSSCAG00000009606)	VANGL1 (ENSSCAG00000009621) #22	CASQ2 (ENSSCAG00000009630) #23	SLC22A15 (ENSSCAG00000009657)	MAB21L3 (ENSSCAG00000009662)	ATP1A1 (ENSSCAG00000009673)	ENSSCAG00000009678	ENSSCAG00000009682	PLA1A (ENSSCAG00000009691)	POPDC2 (ENSSCAG00000009705)	ENSSCAG00000009708	CFAP91 (ENSSCAG00000009721)	GSK3B (ENSSCAG00000009741)	GPR156 (ENSSCAG00000009744)	LRRC58 (ENSSCAG00000009753)	FSTL1 (ENSSCAG00000009760)	NDUFB4 (ENSSCAG00000009763)
Medium ground finch	MODERN SPECIES	23	QTRT2 (ENSGFOG00000002218)	DRD3 (ENSGFOG00000002226)	ZBTB20 (ENSGFOG00000002235)	GAP43 (ENSGFOG00000002241)	ENSGFOG00000002245	LSAMP (ENSGFOG00000002247)	IGSF11 (ENSGFOG00000002265)	UPK1B (ENSGFOG00000002278)	ARHGAP31 (ENSGFOG00000002291)	ENSGFOG00000002315	ENSGFOG00000002335	B4GALT4 (ENSGFOG00000002353)	TMEM39A (ENSGFOG00000002378)	ENSGFOG00000002391	CHD1L (ENSGFOG00000002423)	VANGL1 (ENSGFOG00000002463) #22	CASQ2 (ENSGFOG00000002484) #23	SLC22A15 (ENSGFOG00000002542)	MAB21L3 (ENSGFOG00000002563)	ATP1A1 (ENSGFOG00000002575)	ENSGFOG00000002615	ENSGFOG00000002627	PLA1A (ENSGFOG00000000028)	POPDC2 (ENSGFOG00000000029)	ENSGFOG00000000031	CFAP91 (ENSGFOG00000000032)	GSK3B (ENSGFOG00000000035)	GPR156 (ENSGFOG00000000036)	LRRC58 (ENSGFOG00000000041)	FSTL1 (ENSGFOG00000000047)	ENSGFOG00000000053
Flycatcher	MODERN SPECIES		ENSFALG00000024229	DRD3 (ENSFALG00000006015)	ZBTB20 (ENSFALG00000006027)	GAP43 (ENSFALG00000006031)	ENSFALG00000025602	LSAMP (ENSFALG00000006033)	IGSF11 (ENSFALG00000006041)	UPK1B (ENSFALG00000026624)	ENSFALG00000028286	ENSFALG00000006064	ENSFALG00000006068	B4GALT4 (ENSFALG00000006070)	ENSFALG00000006072	ENSFALG00000006077	ENSFALG00000006087	VANGL1 (ENSFALG00000006097) #22	CASQ2 (ENSFALG00000006100) #23	ENSFALG00000006103	SLC22A15 (ENSFALG00000006106)	MAB21L3 (ENSFALG00000006110)	ATP1A1 (ENSFALG00000006143)	ENSFALG00000024943	TBX19 (ENSFALG00000005706)	SFT2D2 (ENSFALG00000028942)	TIPRL (ENSFALG00000005729)	GPR161 (ENSFALG00000005743)	ENSFALG00000005755	ENSFALG00000005759	ENSFALG00000005771	ENSFALG00000005788	ENSFALG00000023110
Neognathae_c	ANCESTRAL SPECIES	4	ENSGT00530000063679.A	ENSGT00940000159661	ENSGT00940000158617	ENSGT01030000235231	ENSGT00730000111265	ENSGT00940000158516	ENSGT00940000156392.a	ENSGT00940000160779	ENSGT00940000159458	ENSGT00940000165782	ENSGT00940000166068	ENSGT00940000158378	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00940000164584	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784	ENSGT00390000007133
Kakapo	MODERN SPECIES	28	ENSSHBG00005009012	GBE1 (ENSSHBG00005009024)	QTRT2 (ENSSHBG00005009044)	DRD3 (ENSSHBG00005009062)	ZBTB20 (ENSSHBG00005009134)	GAP43 (ENSSHBG00005009180)	LSAMP (ENSSHBG00005009198)	IGSF11 (ENSSHBG00005009215)	UPK1B (ENSSHBG00005009226)	ARHGAP31 (ENSSHBG00005009255)	ENSSHBG00005009265	ENSSHBG00005009271	B4GALT4 (ENSSHBG00005009283)	TMEM39A (ENSSHBG00005009297)	ENSSHBG00005009317	VANGL1 (ENSSHBG00005009329) #22	CASQ2 (ENSSHBG00005009342) #23	ENSSHBG00005009363	SLC22A15 (ENSSHBG00005009376)	MAB21L3 (ENSSHBG00005009404)	ATP1A1 (ENSSHBG00005009427)	ENSSHBG00005009455	ENSSHBG00005009467	MIX23 (ENSSHBG00005009487)	FAM162A (ENSSHBG00005009499)	KPNA1 (ENSSHBG00005009510)	FBXO40 (ENSSHBG00005009521)	SCNN1A (ENSSHBG00005009530)	VAMP1 (ENSSHBG00005009551)	MRPL51 (ENSSHBG00005009560)	NCAPD2 (ENSSHBG00005000924)
Golden eagle	MODERN SPECIES	23	DRD3 (ENSACCG00020001646)	ZBTB20 (ENSACCG00020001632)	ENSACCG00020001623	GAP43 (ENSACCG00020001609)	LSAMP (ENSACCG00020001591)	ENSACCG00020001577	IGSF11 (ENSACCG00020001558)	UPK1B (ENSACCG00020001519)	ARHGAP31 (ENSACCG00020001486)	ENSACCG00020001472	ENSACCG00020001447	B4GALT4 (ENSACCG00020001427)	TMEM39A (ENSACCG00020001402)	ENSACCG00020001380	CHD1L (ENSACCG00020001177)	VANGL1 (ENSACCG00020000895) #22	CASQ2 (ENSACCG00020000868) #23	NHLH2 (ENSACCG00020000844)	SLC22A15 (ENSACCG00020000808)	MAB21L3 (ENSACCG00020000703)	ATP1A1 (ENSACCG00020000664)	ENSACCG00020000616	PLA1A (ENSACCG00020000537)	POPDC2 (ENSACCG00020000516)	ENSACCG00020000466	CFAP91 (ENSACCG00020000422)	GSK3B (ENSACCG00020000388)	GPR156 (ENSACCG00020000354)	LRRC58 (ENSACCG00020000335)	FSTL1 (ENSACCG00020016401)	NDUFB4 (ENSACCG00020016392)
African ostrich	MODERN SPECIES	620	GAP43 (ENSSCUG00000008276)	ENSSCUG00000008277	LSAMP (ENSSCUG00000008279)	ENSSCUG00000008280	ENSSCUG00000008282	ENSSCUG00000008283	IGSF11 (ENSSCUG00000008285)	UPK1B (ENSSCUG00000008287)	ARHGAP31 (ENSSCUG00000008288)	ENSSCUG00000008289	ENSSCUG00000008290	B4GALT4 (ENSSCUG00000008291)	TMEM39A (ENSSCUG00000008294)	ENSSCUG00000008297	CHD1L (ENSSCUG00000008298)	VANGL1 (ENSSCUG00000008302) #22	CASQ2 (ENSSCUG00000008304) #23	SLC22A15 (ENSSCUG00000008306)	MAB21L3 (ENSSCUG00000008308)	ATP1A1 (ENSSCUG00000008337)
Australian saltwater crocodile	MODERN SPECIES	60	TIGIT (ENSCPRG00005003855)	ZBTB20 (ENSCPRG00005003851)	ENSCPRG00005003833	GAP43 (ENSCPRG00005003829)	LSAMP (ENSCPRG00005003806)	ENSCPRG00005003786	IGSF11 (ENSCPRG00005003768)	UPK1B (ENSCPRG00005003732)	ARHGAP31 (ENSCPRG00005003717)	ENSCPRG00005003713	ENSCPRG00005003699	B4GALT4 (ENSCPRG00005003694)	TMEM39A (ENSCPRG00005003687)	ENSCPRG00005003669	CHD1L (ENSCPRG00005003632)	VANGL1 (ENSCPRG00005003618) #22	CASQ2 (ENSCPRG00005003611) #23	NHLH2 (ENSCPRG00005003607)	SLC22A15 (ENSCPRG00005003580)	MAB21L3 (ENSCPRG00005003561)	ATP1A1 (ENSCPRG00005003542)	ENSCPRG00005003516	PLA1A (ENSCPRG00005003510)	POPDC2 (ENSCPRG00005003504)	ENSCPRG00005003500	CFAP91 (ENSCPRG00005003491)	GSK3B (ENSCPRG00005003476)	GPR156 (ENSCPRG00005003458)	LRRC58 (ENSCPRG00005003456)	FSTL1 (ENSCPRG00005003453)	NDUFB4 (ENSCPRG00005003439)
Cryptodira	ANCESTRAL SPECIES		ENSGT00940000158617	ENSGT01030000235231	ENSGT00730000111265	ENSGT00940000158516	ENSGT00940000165328	ENSGT00940000156392.a	ENSGT00940000168076	ENSGT00940000160779	ENSGT00940000159458	ENSGT00940000165782	ENSGT00940000166068	ENSGT00940000158378	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT01030000235556	ENSGT00510000049596	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00390000002329	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784
Testudinoidea	ANCESTRAL SPECIES	1	ENSGT00390000012671	ENSGT00940000158617	ENSGT01030000235231	ENSGT00730000111265	ENSGT00940000158516	ENSGT00940000165328	ENSGT00940000156392.a	ENSGT00940000160779	ENSGT00940000159458	ENSGT00940000165782	ENSGT00940000166068	ENSGT00940000158378	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT01030000235556	ENSGT00510000049596	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00390000002329	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784
Emydidae	ANCESTRAL SPECIES	36	ENSGT00390000012671	ENSGT00940000158617	ENSGT01030000235231	ENSGT00730000111265	ENSGT00940000158516	ENSGT00940000161188.c.a.b	ENSGT00940000156392.a	ENSGT00940000160779	ENSGT00940000159458	ENSGT00940000165782	ENSGT00940000166068	ENSGT00940000158378	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT01030000235556	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00390000002329	ENSGT01040000242649	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556
Three-toed box turtle	MODERN SPECIES	114	ENSTMTG00000005097	ZBTB20 (ENSTMTG00000005074)	ENSTMTG00000005061	GAP43 (ENSTMTG00000005049)	LSAMP (ENSTMTG00000004924)	ENSTMTG00000004881	IGSF11 (ENSTMTG00000004818)	UPK1B (ENSTMTG00000004724)	ARHGAP31 (ENSTMTG00000004686)	ENSTMTG00000004547	ENSTMTG00000004515	B4GALT4 (ENSTMTG00000004505)	TMEM39A (ENSTMTG00000004488)	ENSTMTG00000004408	CHD1L (ENSTMTG00000004351)	VANGL1 (ENSTMTG00000004331) #22	CASQ2 (ENSTMTG00000004186) #23	NHLH2 (ENSTMTG00000004165)	SLC22A15 (ENSTMTG00000004132)	MAB21L3 (ENSTMTG00000004115)	ENSTMTG00000004093	ATP1A1 (ENSTMTG00000004043)	PLA1A (ENSTMTG00000004015)	POPDC2 (ENSTMTG00000003880)	COX17 (ENSTMTG00000003860)	ENSTMTG00000003847	ENSTMTG00000003833	ENSTMTG00000003818	ENSTMTG00000003808	CFAP91 (ENSTMTG00000003678)	GSK3B (ENSTMTG00000003614)
painted turtle	MODERN SPECIES		ENSCPBG00000003038	GAP43 (ENSCPBG00000003022)	LSAMP (ENSCPBG00000002991)	ENSCPBG00000002940	IGSF11 (ENSCPBG00000002888)	UPK1B (ENSCPBG00000002847)	ARHGAP31 (ENSCPBG00000002832)	ENSCPBG00000002821	ENSCPBG00000002779	ENSCPBG00000002738	B4GALT4 (ENSCPBG00000002710)	ENSCPBG00000002678	TMEM39A (ENSCPBG00000002656)	ENSCPBG00000002639	CHD1L (ENSCPBG00000002600)	VANGL1 (ENSCPBG00000002571) #22	CASQ2 (ENSCPBG00000002545) #23	NHLH2 (ENSCPBG00000002535)	SLC22A15 (ENSCPBG00000002507)	MAB21L3 (ENSCPBG00000002492)	ENSCPBG00000002478	ATP1A1 (ENSCPBG00000002472)	ENSCPBG00000002355	PLA1A (ENSCPBG00000002278)	POPDC2 (ENSCPBG00000002262)	ENSCPBG00000002241	CFAP91 (ENSCPBG00000002188)	GSK3B (ENSCPBG00000002148)	GPR156 (ENSCPBG00000002112)	LRRC58 (ENSCPBG00000002101)	FSTL1 (ENSCPBG00000002072)
Testudinidae	ANCESTRAL SPECIES		ENSGT00940000159661	ENSGT00940000158617	ENSGT01030000235231	ENSGT00730000111265	ENSGT00940000158516	ENSGT00940000165328	ENSGT00940000156392.a	ENSGT00940000160779	ENSGT00940000159458	ENSGT00940000165782	ENSGT00940000166068	ENSGT00940000158378	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT01030000235556	ENSGT00510000049596	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00390000002329	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784
Abingdon island giant tortoise	MODERN SPECIES	2119																VANGL1 (ENSCABG00000018702) #22	CASQ2 (ENSCABG00000018699) #23	NHLH2 (ENSCABG00000018697)	ENSCABG00000018696	ENSCABG00000018695	MAB21L3 (ENSCABG00000018693)	ATP1A1 (ENSCABG00000018458)	ENSCABG00000018421	PLA1A (ENSCABG00000018418)	POPDC2 (ENSCABG00000018409)	COX17 (ENSCABG00000018404)	CFAP91 (ENSCABG00000018389)	GSK3B (ENSCABG00000018385)	GPR156 (ENSCABG00000018384)	LRRC58 (ENSCABG00000018383)	FSTL1 (ENSCABG00000018380)
Goode s thornscrub tortoise	MODERN SPECIES		ZBTB20 (ENSGEVG00005000413)	GAP43 (ENSGEVG00005000427)	ENSGEVG00005000438	LSAMP (ENSGEVG00005000450)	ENSGEVG00005000481	ENSGEVG00005000488	IGSF11 (ENSGEVG00005000512)	UPK1B (ENSGEVG00005000534)	ARHGAP31 (ENSGEVG00005000557)	ENSGEVG00005000587	ENSGEVG00005000598	B4GALT4 (ENSGEVG00005000616)	TMEM39A (ENSGEVG00005000643)	ENSGEVG00005000681	CHD1L (ENSGEVG00005000712)	VANGL1 (ENSGEVG00005000739) #22	CASQ2 (ENSGEVG00005000799) #23	NHLH2 (ENSGEVG00005000818)	SLC22A15 (ENSGEVG00005000829)	MAB21L3 (ENSGEVG00005000850)	ATP1A1 (ENSGEVG00005000870)	ENSGEVG00005000905	ENSGEVG00005000922	PLA1A (ENSGEVG00005000951)	POPDC2 (ENSGEVG00005000985)	COX17 (ENSGEVG00005001021)	ENSGEVG00005001033	CFAP91 (ENSGEVG00005001084)	GSK3B (ENSGEVG00005001193)	GPR156 (ENSGEVG00005001247)	LRRC58 (ENSGEVG00005001266)
Lepidosauria	ANCESTRAL SPECIES	96								ENSGT01060000248594.e.b	ENSGT00530000063860.b	ENSGT00390000013549.a.a	ENSGT00950000183130.B	ENSGT00940000153481.C	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00510000049596	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00940000164584	ENSGT00390000002329	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784
Episquamata	ANCESTRAL SPECIES	6	ENSGT00390000017736.a	ENSGT00940000158731	ENSGT00940000156612	ENSGT00390000002109	ENSGT00940000161796	ENSGT00730000111328	ENSGT00940000156876	ENSGT01060000248594.e.b	ENSGT00530000063860.b	ENSGT00390000013549.a.a	ENSGT00950000183130.B	ENSGT00940000153481.C	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00940000164584	ENSGT00390000002329	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784	ENSGT00390000007133
Laterata	ANCESTRAL SPECIES	7	ENSGT00390000014577.a	ENSGT00390000017736.a	ENSGT00940000158731	ENSGT00940000156612	ENSGT00390000002109	ENSGT00730000111328	ENSGT00940000156876	ENSGT01060000248594.e.b	ENSGT00530000063860.b	ENSGT00390000013549.a.a	ENSGT00950000183130.B	ENSGT00940000153481.C	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00390000002329	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784	ENSGT00390000007133	ENSGT00390000004601
Argentine black and white tegu	MODERN SPECIES	45	AICDA (ENSSMRG00000004508)	PHC1 (ENSSMRG00000004503)	M6PR (ENSSMRG00000004501)	ENSSMRG00000004480	ENSSMRG00000004447	TMEM52B (ENSSMRG00000004442)	GABARAPL1 (ENSSMRG00000004405)	ENSSMRG00000004399	TRPC4 (ENSSMRG00000003736)	POSTN (ENSSMRG00000003693)	SUPT20H (ENSSMRG00000003469)	EXOSC8 (ENSSMRG00000003449)	ALG5 (ENSSMRG00000003444)	TMEM39A (ENSSMRG00000003426)	ENSSMRG00000003418	VANGL1 (ENSSMRG00000003416) #22	CASQ2 (ENSSMRG00000003383) #23	NHLH2 (ENSSMRG00000003377)	SLC22A15 (ENSSMRG00000003365)	MAB21L3 (ENSSMRG00000003324)	ATP1A1 (ENSSMRG00000003307)	CYP4F22 (ENSSMRG00000003283)	PGLYRP2 (ENSSMRG00000003278)	LDLR (ENSSMRG00000003274)	ENSSMRG00000003234	KANK2 (ENSSMRG00000003219)	DOCK6 (ENSSMRG00000003144)	ENSSMRG00000003121	RAB3D (ENSSMRG00000003115)	PLPPR2 (ENSSMRG00000003063)	SWSAP1 (ENSSMRG00000003060)
Common wall lizard	MODERN SPECIES	8															CHD1L (ENSPMRG00000023281)	VANGL1 (ENSPMRG00000023286) #22	ENSPMRG00000023288	ENSPMRG00000023291	NHLH2 (ENSPMRG00000016824)	SLC22A15 (ENSPMRG00000016829)	MAB21L3 (ENSPMRG00000016836)	ENSPMRG00000016841	ATP1A1 (ENSPMRG00000016847)	PLA1A (ENSPMRG00000016859)	POPDC2 (ENSPMRG00000016870)	COX17 (ENSPMRG00000016875)	CFAP91 (ENSPMRG00000016880)	GSK3B (ENSPMRG00000016914)	GPR156 (ENSPMRG00000016925)	LRRC58 (ENSPMRG00000016931)	ENSPMRG00000016932
Toxicofera	ANCESTRAL SPECIES	6	ENSGT00390000017736.a	ENSGT00940000158731	ENSGT00940000156612	ENSGT00390000002109	ENSGT00940000161796	ENSGT00730000111328	ENSGT00940000156876	ENSGT01060000248594.e.b	ENSGT00530000063860.b	ENSGT00390000013549.a.a	ENSGT00950000183130.B	ENSGT00940000153481.C	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000162602	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00940000164584	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784	ENSGT00390000007133	ENSGT00390000004601
Lizard	MODERN SPECIES	1	ENSACAG00000017562	GABARAPL1 (ENSACAG00000043425)	ENSACAG00000037700	TRPC4 (ENSACAG00000017569)	ENSACAG00000040255	POSTN (ENSACAG00000017600)	ENSACAG00000029033	ENSACAG00000035608	SUPT20H (ENSACAG00000017639)	ENSACAG00000045496	EXOSC8 (ENSACAG00000040511)	ALG5 (ENSACAG00000017663)	ENSACAG00000017673	ENSACAG00000028701	ENSACAG00000017686	VANGL1 (ENSACAG00000003153) #22	CASQ2 (ENSACAG00000003187) #23	ENSACAG00000003304	SLC22A15 (ENSACAG00000003327)	MAB21L3 (ENSACAG00000003399)	ENSACAG00000037716	ENSACAG00000007813	ENSACAG00000007823	ENSACAG00000007871	ENSACAG00000008098	ENSACAG00000026130	ENSACAG00000008192	IDH3G (ENSACAG00000008220)	SRPK3 (ENSACAG00000008280)	PLXNB3 (ENSACAG00000008378)	ENSACAG00000029519
tuatara	MODERN SPECIES	1096	GPD1 (ENSSPUG00000016598)	SMARCD1 (ENSSPUG00000016616)	ENSSPUG00000016647	ENSSPUG00000016654	RACGAP1 (ENSSPUG00000016669)	ENSSPUG00000016720	ENSSPUG00000016735	AQP6 (ENSSPUG00000016757)	TRPC4 (ENSSPUG00000016771)	POSTN (ENSSPUG00000016779)	SUPT20H (ENSSPUG00000016802)	EXOSC8 (ENSSPUG00000016825)	ALG5 (ENSSPUG00000016834)	TMEM39A (ENSSPUG00000016848)	CHD1L (ENSSPUG00000016865)	VANGL1 (ENSSPUG00000016879) #22	CASQ2 (ENSSPUG00000016892) #23	NHLH2 (ENSSPUG00000016906)	SLC22A15 (ENSSPUG00000016922)	MAB21L3 (ENSSPUG00000016959)	ATP1A1 (ENSSPUG00000016982)	ENSSPUG00000017027	PLA1A (ENSSPUG00000017042)	POPDC2 (ENSSPUG00000017054)	ENSSPUG00000017067	CFAP91 (ENSSPUG00000017093)	GSK3B (ENSSPUG00000017220)	LRRC58 (ENSSPUG00000017254)	FSTL1 (ENSSPUG00000017282)	ENSSPUG00000017292	HGD (ENSSPUG00000017347)
Anura	ANCESTRAL SPECIES	255														ENSGT00390000013817	ENSGT00940000158283	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000160364	ENSGT01050000244827.B	ENSGT00940000154840.b	ENSGT00940000162718	ENSGT00940000155177.b.m	ENSGT00940000155177.b.n.a	ENSGT00940000158367
Leishan spiny toad	MODERN SPECIES	518															ENSLLEG00000023000	ENSLLEG00000022921 #22
Frog	MODERN SPECIES	2	rrp1b (ENSXETG00000013683)	hsf2bp (ENSXETG00000045215)	ENSXETG00000044642	ENSXETG00000045504	ENSXETG00000044072	cryaa (ENSXETG00000020802)	u2af1 (ENSXETG00000040592)	ENSXETG00000045493	icoslg (ENSXETG00000047833)	ENSXETG00000045526	ENSXETG00000041442	ENSXETG00000042310	ENSXETG00000041110	timmdc1 (ENSXETG00000041609)	poglut1 (ENSXETG00000047724)	VANGL1 (ENSXETG00000048296) #22	casq2 (ENSXETG00000046235) #23	ENSXETG00000048594	slc22a15.1 (ENSXETG00000020363)	MAB21L3 (ENSXETG00000049082)	atp1a1 (ENSXETG00000020366)	ENSXETG00000040202	ENSXETG00000040957	ENSXETG00000040342	trim45 (ENSXETG00000017042)	ENSXETG00000035904	ENSXETG00000043768	igsf3 (ENSXETG00000047805)	mcmbp (ENSXETG00000003351)	cbs (ENSXETG00000047466)	pknox1 (ENSXETG00000032286)
Coelacanth	MODERN SPECIES	966							SCAF4 (ENSLACG00000013913)	SOD1 (ENSLACG00000013736)	TIAM1 (ENSLACG00000011787)	ENSLACG00000011362	cldn8.3 (ENSLACG00000011216)	ENSLACG00000010878	GRIK1 (ENSLACG00000009256)	TIMMDC1 (ENSLACG00000008939)	POGLUT1 (ENSLACG00000008517)	VANGL1 (ENSLACG00000008020) #22	CASQ2 (ENSLACG00000007173) #23	SLC22A15 (ENSLACG00000005854)	MAB21L3 (ENSLACG00000005381)	ATP1A1 (ENSLACG00000001454)
Actinopterygii	ANCESTRAL SPECIES	78	ENSGT00940000156336	ENSGT00940000158856	ENSGT00940000157498	ENSGT00940000157300	ENSGT00940000154334	ENSGT00940000162718	ENSGT00940000155177.b	ENSGT00940000155177.a	ENSGT00940000158367	ENSGT01030000234540.E	ENSGT01030000235556	ENSGT00940000154840.b	ENSGT01050000244827.B	ENSGT00940000160364	ENSGT00940000164480	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00390000014606	ENSGT00940000154497.B	ENSGT00940000161679	ENSGT00390000015060	ENSGT00940000157065	ENSGT00390000013113	ENSGT00940000153577.A	ENSGT00510000046499	ENSGT00390000016421.b.a	ENSGT00940000160495.a	ENSGT00550000074968	ENSGT00940000177223
Neopterygii	ANCESTRAL SPECIES	97	ENSGT00940000165076.b	ENSGT00940000166792	ENSGT00940000154909.b	ENSGT00940000154909.a	ENSGT00950000182864.a.b.b.a.a	ENSGT00390000013415.a.b	ENSGT01030000234527.A.a.b.a.a	ENSGT00940000159105	ENSGT00390000008694.b.b	ENSGT00940000165064	ENSGT00390000003706.a.a	ENSGT00940000175622	ENSGT00950000182936.a.a.a	ENSGT00940000159415	ENSGT00940000164480	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000154497.B	ENSGT00940000161679	ENSGT00390000015060	ENSGT00940000157065	ENSGT00390000013113	ENSGT00940000153577.A	ENSGT00510000046499	ENSGT00390000016421.b.a	ENSGT00940000160495.a	ENSGT00550000074968	ENSGT00940000177223	ENSGT00730000110915.b
Osteoglossocephalai	ANCESTRAL SPECIES	53	ENSGT00940000158318	ENSGT01090000259985.b.b.a.b	ENSGT01090000259985.b.b.a.a	ENSGT00950000182906.b.b	ENSGT00390000016696	ENSGT00390000007467	ENSGT00910000144271.C	ENSGT00390000011275	ENSGT00940000162722	ENSGT00940000161651	ENSGT00390000003706.a.a	ENSGT00940000175622	ENSGT00950000182936.a.a.a	ENSGT00940000159415	ENSGT00940000164480.a.a	ENSGT00390000012496.a #22	ENSGT00390000019377.b #23	ENSGT00940000161679.b	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000154497.B	ENSGT00940000161679.a	ENSGT00390000015060	ENSGT00940000157065	ENSGT00390000013113	ENSGT00940000153577.A	ENSGT00510000046499	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00550000074968	ENSGT00900000141090
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	249							ENSGT01090000259985.b.b.a.b	ENSGT00950000182906.b.b.e	ENSGT00940000162722	ENSGT00940000161651.a	ENSGT00940000155686	ENSGT00940000166972	ENSGT00940000164246.C	ENSGT00940000164480.a.b	ENSGT00940000164480.b	ENSGT00390000012496.a.a #22	ENSGT00390000019377.b.c #23	ENSGT00940000161679.b	ENSGT00390000015060	ENSGT00940000157065.s	ENSGT00730000110915.b.k	ENSGT00940000158408.e	ENSGT01050000244864.C.e	ENSGT01050000244864.D.x	ENSGT00940000157784.c.a	ENSGT00940000156556.j	ENSGT00940000159755.a	ENSGT00520000055635.c.a.a.b	ENSGT00530000063970.f	ENSGT00940000164706.a
P. kingsleyae	MODERN SPECIES	243	ENSPKIG00000012087	stxbp5l (ENSPKIG00000011710)	ENSPKIG00000011517	ENSPKIG00000011496	olig1 (ENSPKIG00000011478)	olig2 (ENSPKIG00000011466)	ENSPKIG00000011460	ENSPKIG00000011430	ENSPKIG00000011405	ENSPKIG00000011367	hpxa (ENSPKIG00000011323)	ENSPKIG00000011291	ENSPKIG00000011276	ENSPKIG00000011268	ENSPKIG00000011253	vangl1 (ENSPKIG00000011229) #22	casq2 (ENSPKIG00000011189) #23	SLC5A3 (ENSPKIG00000011174)	atp5po (ENSPKIG00000011154)	ITSN1 (ENSPKIG00000011093)	bcl9 (ENSPKIG00000011043)	acp6 (ENSPKIG00000011008)	GJA5 (ENSPKIG00000010992)	fstl1a (ENSPKIG00000010945)	LRRC58 (ENSPKIG00000010904)	GPR156 (ENSPKIG00000010864)	gsk3ba (ENSPKIG00000010801)	ENSPKIG00000010751	ENSPKIG00000010722	ENSPKIG00000010706	ENSPKIG00000010677
Asian bonytongue	MODERN SPECIES	5	fign (ENSSFOG00015011301)	KCNH7 (ENSSFOG00015011307)	gca (ENSSFOG00015011347)	ENSSFOG00015011461	stxbp5l (ENSSFOG00015011505)	ENSSFOG00015011715	ENSSFOG00015011725	olig1 (ENSSFOG00015026710)	olig2 (ENSSFOG00015031376)	MX1 (ENSSFOG00015011797)	ENSSFOG00015011828	hpxa (ENSSFOG00015011844)	ENSSFOG00015011873	ENSSFOG00015030074	ENSSFOG00015026468	vangl1 (ENSSFOG00015011907) #22	casq2 (ENSSFOG00015011933) #23	SLC5A3 (ENSSFOG00015011968)	atp5po (ENSSFOG00015011974)	ITSN1 (ENSSFOG00015012013)	ENSSFOG00015012114	bcl9 (ENSSFOG00015012144)	acp6 (ENSSFOG00015012200)	gja5a (ENSSFOG00015012212)	ENSSFOG00015012226	GJA8 (ENSSFOG00015012243)	FSTL1 (ENSSFOG00015029425)	LRRC58 (ENSSFOG00015012285)	GPR156 (ENSSFOG00015031034)	gsk3ba (ENSSFOG00015025489)	ENSSFOG00015012379
Osteoglossiformes	ANCESTRAL SPECIES	32										ENSGT00940000164201.c.b.a	ENSGT00940000155116.a	ENSGT00940000159099.y	ENSGT00950000182936.a.a.a	ENSGT00940000159415	ENSGT00940000164480.a.a	ENSGT00390000012496.a.b #22	ENSGT00390000019377.b.d #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000154497.B	ENSGT00940000161679.a	ENSGT00940000157065.t	ENSGT00390000013113	ENSGT00940000153577.A	ENSGT00510000046499	ENSGT00390000016421.b.a	ENSGT00940000166160.mb	ENSGT00940000166160.lb	ENSGT00550000074968	ENSGT00940000177223	ENSGT00730000110915.b.l
Asian bonytongue	MODERN SPECIES	3	efnb2b (ENSSFOG00015009976)	ENSSFOG00015010004	stxbp5l (ENSSFOG00015010031)	gtf2e1 (ENSSFOG00015032884)	rabl3 (ENSSFOG00015026243)	ENSSFOG00015025175	ercc1 (ENSSFOG00015010514)	OLIG2 (ENSSFOG00015024466)	gatd3 (ENSSFOG00015010540)	mxg (ENSSFOG00015010556)	ENSSFOG00015029059	ENSSFOG00015010757	fhip1b (ENSSFOG00015010779)	CNGA4 (ENSSFOG00015010797)	nhlh2 (ENSSFOG00015024737)	vangl1 (ENSSFOG00015010820) #22	poglut1 (ENSSFOG00015010850)	timmdc1 (ENSSFOG00015026268)	KCNE2 (ENSSFOG00015010872)	SLC5A3 (ENSSFOG00015010880)	ITSN1 (ENSSFOG00015010921)	cryzl1 (ENSSFOG00015011020)	setd4 (ENSSFOG00015011050)	cbr1 (ENSSFOG00015025472)	DOP1B (ENSSFOG00015011228)	ENSSFOG00015011292	ENSSFOG00015027146	morc3a (ENSSFOG00015011337)	chaf1b (ENSSFOG00015011382)	ENSSFOG00015026698	BCL9 (ENSSFOG00015011492)
Clupeocephala	DUPLICATION
Clupeocephala	ANCESTRAL SPECIES	432													ENSGT00390000009178	ENSGT00940000164246.C.d.b	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000172275	ENSGT00940000158283	ENSGT00390000013817
Euteleosteomorpha	ANCESTRAL SPECIES	124											ENSGT00940000155063.a.b	ENSGT00940000155107.b.a	ENSGT00390000009178	ENSGT00940000164246.C.d.b	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000156862	ENSGT00940000155232.t.a.b.b	ENSGT00940000160749.b	ENSGT00940000158655.e	ENSGT00940000160898	ENSGT00950000183071.a.a.a.e.b	ENSGT01030000234621.F.c	ENSGT00940000158859.f	ENSGT01090000260278	ENSGT00940000163195.B.a	ENSGT00550000074800.a.b	ENSGT00940000158665.d
Acanthomorphata	ANCESTRAL SPECIES	85									ENSGT00940000155063.a.b	ENSGT00940000155107.b.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00390000009178	ENSGT00980000198666	ENSGT00940000164246.C.d.b	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000153931.b.b.d	ENSGT00940000153931.b.b.c	ENSGT00940000155232.t.b.a	ENSGT00940000166422	ENSGT00940000155232.t.a.b.b	ENSGT00940000156862	ENSGT00950000183071.a.a.a.e.b	ENSGT01030000234621.F.c	ENSGT00940000158859.f	ENSGT00940000163195.B.a	ENSGT00550000074800.a.b	ENSGT00940000158665.d
Euacanthomorphacea	ANCESTRAL SPECIES	36	ENSGT00990000203779	ENSGT00530000063873.A	ENSGT00940000156552.c.b	ENSGT00390000009001	ENSGT00550000075118.k	ENSGT00940000159160	ENSGT00730000111163	ENSGT00950000183030	ENSGT00940000157128	ENSGT00940000155063.a.b	ENSGT00940000155107.b.a	ENSGT01090000260082.d.a.b.o.a	ENSGT00390000009178	ENSGT00940000164246.C.d.b	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000153931.b.b.d	ENSGT00940000153931.b.b.c	ENSGT00940000155232.t.b.a	ENSGT00940000166422	ENSGT00940000155232.t.a.b.b	ENSGT00940000156862	ENSGT00950000183071.a.a.a.e.b	ENSGT01030000234621.F.c	ENSGT00940000158859.f	ENSGT00940000163195.B.a	ENSGT00550000074800.a.b	ENSGT00940000158665.d
Pinecone sodierfish	MODERN SPECIES	11	ENSMMDG00005021573	raph1b (ENSMMDG00005021460)	spp2 (ENSMMDG00005021455)	cpb2 (ENSMMDG00005021453)	alg11 (ENSMMDG00005021449)	cpb2 (ENSMMDG00005021445)	zc3h13 (ENSMMDG00005021439)	RPL31 (ENSMMDG00005021436)	chst10 (ENSMMDG00005021433)	MAP4K4 (ENSMMDG00005021003)	ENSMMDG00005020982	ENSMMDG00005019773	ENSMMDG00005017978	ENSMMDG00005017933	ENSMMDG00005017931	VANGL1 (ENSMMDG00005017927) #22	ENSMMDG00005017920 #23	poglut1 (ENSMMDG00005017914)	timmdc1 (ENSMMDG00005017913)	abcc4 (ENSMMDG00005017896)	abcc4 (ENSMMDG00005008910)	cldn10a (ENSMMDG00005008793)	ENSMMDG00005008790	ENSMMDG00005008788	ENSMMDG00005008785	ENSMMDG00005008783	oxgr1a.2 (ENSMMDG00005008782)	klhl41b (ENSMMDG00005008780)	ENSMMDG00005008772	atp5f1b (ENSMMDG00005008559)	ENSMMDG00005008550
Percomorphaceae	ANCESTRAL SPECIES	22	ENSGT00860000133881	ENSGT00940000161407.b	ENSGT00940000158446	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a	ENSGT00990000203744.b	ENSGT00940000157901	ENSGT00390000005163	ENSGT00390000003152	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00390000009178	ENSGT00940000164246.C.d.b	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000153931.b.b.d	ENSGT00940000153931.b.b.c	ENSGT00940000155232.t.b.a	ENSGT00940000166422	ENSGT00940000155232.t.a.b.b	ENSGT00940000156862	ENSGT00950000183071.a.a.a.e.b	ENSGT01030000234621.F.c	ENSGT00940000158859.f	ENSGT00940000163195.B.a	ENSGT00550000074800.a.b	ENSGT00940000158665.d
Tiger tail seahorse	MODERN SPECIES	514	ptger2a (ENSHCOG00000002221)	ENSHCOG00000002230	ENSHCOG00000002244	ENSHCOG00000002271	ENSHCOG00000002279	ENSHCOG00000002284	ENSHCOG00000002302	ENSHCOG00000002313	ENSHCOG00000002321	rtraf (ENSHCOG00000002335)	sap18 (ENSHCOG00000002348)	GJA3 (ENSHCOG00000002357)	ENSHCOG00000002368	ENSHCOG00000002376	ENSHCOG00000002380	VANGL1 (ENSHCOG00000002405) #22	ENSHCOG00000002416 #23	poglut1 (ENSHCOG00000002429)	ENSHCOG00000002437	ENSHCOG00000002443	ENSHCOG00000002451	abcc4 (ENSHCOG00000002492)	ENSHCOG00000002521	vps16 (ENSHCOG00000002549)	cavin2b (ENSHCOG00000002559)	arl11 (ENSHCOG00000002573)	ENSHCOG00000002582	eef1b2 (ENSHCOG00000002591)	ENSHCOG00000002601	ENSHCOG00000002611	mlpha (ENSHCOG00000002625)
Percomorphaceae_B	ANCESTRAL SPECIES	22	ENSGT00860000133881	ENSGT00940000161407.b	ENSGT00940000158446	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a	ENSGT00940000157901	ENSGT00990000203744.b	ENSGT00390000005163	ENSGT00390000003152	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00390000009178	ENSGT00940000164246.C.d.b	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000153931.b.b.d	ENSGT00940000153931.b.b.c	ENSGT00940000155232.t.b.a	ENSGT00940000166422	ENSGT00940000155232.t.a.b.b	ENSGT00940000156862	ENSGT00950000183071.a.a.a.e.b	ENSGT01030000234621.F.c	ENSGT00940000158859.f	ENSGT00940000163195.B.a	ENSGT00550000074800.a.b	ENSGT00940000158665.d
Percomorphaceae_C	ANCESTRAL SPECIES	23	ENSGT00860000133881	ENSGT00940000161407.b	ENSGT00940000158446	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a	ENSGT00940000157901	ENSGT00990000203744.b	ENSGT00390000005163	ENSGT00390000003152	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00390000009178	ENSGT00940000164246.C.d.b	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000153931.b.b.d	ENSGT00940000153931.b.b.c	ENSGT00940000155232.t.b.a	ENSGT00940000166422	ENSGT00940000155232.t.a.b.b	ENSGT00940000156862	ENSGT00950000183071.a.a.a.e.b	ENSGT01030000234621.F.c	ENSGT00940000158859.f	ENSGT00940000163195.B.a	ENSGT00550000074800.a.b	ENSGT00940000158665.d
Percomorphaceae_D	ANCESTRAL SPECIES	23	ENSGT00940000158446	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a	ENSGT00940000177331	ENSGT00990000203744.a.a	ENSGT00990000203744.b	ENSGT00940000157901	ENSGT00390000005163	ENSGT00390000003152	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00390000009178	ENSGT00940000164246.C.d.b	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000153931.b.b.d	ENSGT00940000153931.b.b.c	ENSGT00940000155232.t.b.a	ENSGT00940000166422	ENSGT00940000155232.t.a.b.b	ENSGT00940000156862	ENSGT00950000183071.a.a.a.e.b	ENSGT01030000234621.F.c	ENSGT00940000158859.f	ENSGT00940000163195.B.a	ENSGT00550000074800.a.b	ENSGT00940000158665.d
Anabantaria	ANCESTRAL SPECIES	23	ENSGT00940000161407.b	ENSGT00940000158446	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a	ENSGT00990000203744.b	ENSGT00940000157901	ENSGT00390000005163	ENSGT00390000003152	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00390000009178	ENSGT00940000164246.C.d.b	ENSGT00980000198666	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000153931.b.b.c	ENSGT00940000155232.t.b.a	ENSGT00940000166422	ENSGT00940000155232.t.a.b.b	ENSGT00940000156862	ENSGT00950000183071.a.a.a.e.b	ENSGT01030000234621.F.c	ENSGT00940000158859.f	ENSGT00940000163195.B.a	ENSGT00550000074800.a.b	ENSGT00940000158665.d	ENSGT00940000157564
Zig-zag eel	MODERN SPECIES	11	lig4 (ENSMAMG00000008472)	irs2a (ENSMAMG00000008464)	ENSMAMG00000008443	gpr137c (ENSMAMG00000008405)	TXNDC16 (ENSMAMG00000008377)	ptger2a (ENSMAMG00000027924)	ENSMAMG00000028696	NID2 (ENSMAMG00000008242)	rtraf (ENSMAMG00000027471)	ENSMAMG00000027682	ENSMAMG00000007790	ENSMAMG00000006240	ENSMAMG00000006189	ENSMAMG00000027216	ENSMAMG00000006165	ENSMAMG00000006057 #22	ENSMAMG00000006029 #23	ENSMAMG00000005984	ENSMAMG00000005967	ENSMAMG00000005860	ENSMAMG00000005832	GABRB3 (ENSMAMG00000005647)	ENSMAMG00000005619	GABRG3 (ENSMAMG00000005586)	ENSMAMG00000005549	ENSMAMG00000026028	ENSMAMG00000005413	DBI (ENSMAMG00000005224)	STEAP3 (ENSMAMG00000005197)	C1QL2 (ENSMAMG00000027618)	EN1 (ENSMAMG00000005134)
Anabantoidei	ANCESTRAL SPECIES	23	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b	ENSGT00940000158446	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a	ENSGT00940000157901	ENSGT00390000005163	ENSGT00390000003152	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00390000009178	ENSGT00940000164246.C.d.b	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000153931.b.b.c	ENSGT00940000155232.t.b.a	ENSGT00940000166422	ENSGT00940000155232.t.a.b.b.g	ENSGT00940000155232.t.a.b.b.h	ENSGT00940000156862	ENSGT00950000183071.a.a.a.e.b	ENSGT01030000234621.F.c	ENSGT00940000158859.f	ENSGT00940000163195.B.a	ENSGT00550000074800.a.b	ENSGT00940000158665.d
Climbing perch	MODERN SPECIES	11	ENSATEG00000005561	lig4 (ENSATEG00000005583)	irs2a (ENSATEG00000005603)	ENSATEG00000005610	gpr137c (ENSATEG00000005621)	TXNDC16 (ENSATEG00000005682)	ptger2a (ENSATEG00000005880)	NID2 (ENSATEG00000005891)	rtraf (ENSATEG00000006137)	ENSATEG00000006190	ENSATEG00000006213	ENSATEG00000006237	ENSATEG00000006294	ENSATEG00000006945	ENSATEG00000006956	ENSATEG00000006962 #22	ENSATEG00000006993 #23	ENSATEG00000007035	ENSATEG00000007045	abcc4 (ENSATEG00000007071)	cldn10a (ENSATEG00000007198)	ENSATEG00000007216	ENSATEG00000007221	ENSATEG00000007246	ENSATEG00000007278	dzip1 (ENSATEG00000007300)	ENSATEG00000027916	ENSATEG00000026945	ENSATEG00000007396	ENSATEG00000007403	ENSATEG00000007596
Siamese fighting fish	MODERN SPECIES	10	lig4 (ENSBSLG00000003539)	irs2a (ENSBSLG00000003542)	ENSBSLG00000003543	acp2 (ENSBSLG00000003544)	gpr137c (ENSBSLG00000003545)	TXNDC16 (ENSBSLG00000003546)	ptger2a (ENSBSLG00000003547)	NID2 (ENSBSLG00000003549)	rtraf (ENSBSLG00000003553)	sap18 (ENSBSLG00000003552)	ENSBSLG00000003554	ENSBSLG00000003555	ENSBSLG00000003556	ENSBSLG00000003557	ENSBSLG00000003558	VANGL1 (ENSBSLG00000003559) #22	ENSBSLG00000003560 #23	poglut1 (ENSBSLG00000003561)	timmdc1 (ENSBSLG00000003562)	abcc4 (ENSBSLG00000004189)	cldn10a (ENSBSLG00000006065)	ENSBSLG00000000120	ENSBSLG00000000160	ENSBSLG00000000224	dzip1 (ENSBSLG00000000246)	ENSBSLG00000000270	klhl41b (ENSBSLG00000000277)	ENSBSLG00000000291	atp5f1b (ENSBSLG00000000313)	DHRS9 (ENSBSLG00000000364)	ABCB11 (ENSBSLG00000001025)
Carangaria	ANCESTRAL SPECIES	23	ENSGT00940000158446	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a	ENSGT00940000177331	ENSGT00990000203744.a.a	ENSGT00990000203744.b	ENSGT00940000157901	ENSGT00390000005163	ENSGT00390000003152	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00390000009178	ENSGT00940000164246.C.d.b	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000153931.b.b.d	ENSGT00940000153931.b.b.c	ENSGT00940000155232.t.b.a	ENSGT00940000166422	ENSGT00940000155232.t.a.b.b	ENSGT00940000156862	ENSGT00950000183071.a.a.a.e.b	ENSGT01030000234621.F.c	ENSGT00940000158859.f	ENSGT00940000163195.B.a	ENSGT00550000074800.a.b	ENSGT00940000158665.d
Pleuronectoidei	ANCESTRAL SPECIES	95	ENSGT00940000161407.b	ENSGT00940000158446	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a	ENSGT00940000157901	ENSGT00990000203744.b	ENSGT00390000005163	ENSGT00390000003152	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00390000009178	ENSGT00980000198666	ENSGT00940000164480.a.b	ENSGT00940000164246.C.d.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00940000153931.b.b.d
Turbot	MODERN SPECIES		ENSSMAG00000002936	ENSSMAG00000002978	ENSSMAG00000002956	ENSSMAG00000002892	ENSSMAG00000002846	ENSSMAG00000002735	ENSSMAG00000030615	ENSSMAG00000002704	ENSSMAG00000002600	ENSSMAG00000002579	ENSSMAG00000002568	ENSSMAG00000002549	ENSSMAG00000002521	ENSSMAG00000002440	ENSSMAG00000002433	ENSSMAG00000002346 #22	ENSSMAG00000002313 #23	ENSSMAG00000002278	ENSSMAG00000002175	ndfip2 (ENSSMAG00000003438)	ENSSMAG00000003455	ENSSMAG00000003464	slitrk6 (ENSSMAG00000003486)	ENSSMAG00000003494	ENSSMAG00000003530	ENSSMAG00000003575	ENSSMAG00000003618	ENSSMAG00000003677	ENSSMAG00000026957	ENSSMAG00000005432	ENSSMAG00000005501
Tongue sole	MODERN SPECIES	5	ENSCSEG00000013573	ENSCSEG00000013591	gpr137c (ENSCSEG00000013601)	TXNDC16 (ENSCSEG00000013621)	ptger2a (ENSCSEG00000013665)	NID2 (ENSCSEG00000013673)	ENSCSEG00000013709	ENSCSEG00000013718	ENSCSEG00000013738	ENSCSEG00000013745	rtraf (ENSCSEG00000013756)	sap18 (ENSCSEG00000013784)	ENSCSEG00000013822	ENSCSEG00000013851	ENSCSEG00000013855	VANGL1 (ENSCSEG00000013860) #22	ENSCSEG00000013870 #23	poglut1 (ENSCSEG00000013890)	irs2a (ENSCSEG00000013902)	lig4 (ENSCSEG00000013905)	NALF1 (ENSCSEG00000013914)	acp2 (ENSCSEG00000013919)	ENSCSEG00000013927	cldn10a (ENSCSEG00000013936)	abcc4 (ENSCSEG00000013948)	TRAK2 (ENSCSEG00000014003)	STRADB (ENSCSEG00000014020)	ENSCSEG00000014035	pomca (ENSCSEG00000014056)	ENSCSEG00000014070	ENSCSEG00000014095
Carangaria_A	ANCESTRAL SPECIES	23	ENSGT00860000133881	ENSGT00940000161407.b	ENSGT00940000158446	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a	ENSGT00990000203744.b	ENSGT00940000157901	ENSGT00390000005163	ENSGT00390000003152	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00390000009178	ENSGT00940000164246.C.d.b	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000153931.b.b.d	ENSGT00940000153931.b.b.c	ENSGT00940000155232.t.b.a	ENSGT00940000166422	ENSGT00940000155232.t.a.b.b	ENSGT00940000156862	ENSGT00950000183071.a.a.a.e.b	ENSGT01030000234621.F.c	ENSGT00940000158859.f	ENSGT00940000163195.B.a	ENSGT00550000074800.a.b	ENSGT00940000158665.d
Seriola	ANCESTRAL SPECIES	37	ENSGT00940000158446	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a	ENSGT00940000177331	ENSGT00990000203744.a.a	ENSGT00990000203744.a.b	ENSGT00940000157901	ENSGT00390000005163	ENSGT00390000003152	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00390000009178	ENSGT00940000164246.C.d.b	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000153931.b.b.d	ENSGT00940000153931.b.b.c	ENSGT00940000155232.t.b.a	ENSGT00940000166422	ENSGT00940000155232.t.a.b.b	ENSGT00940000156862	ENSGT00950000183071.a.a.a.e.b	ENSGT01030000234621.F.c	ENSGT00940000158859.f	ENSGT00940000163195.B.a	ENSGT00550000074800.a.b	ENSGT00940000158665.d
Yellowtail amberjack	MODERN SPECIES	3249	acp2 (ENSSLDG00000003167)	gpr137c (ENSSLDG00000003107)	TXNDC16 (ENSSLDG00000003004)	ptger2a (ENSSLDG00000002941)	ENSSLDG00000002919	ENSSLDG00000002889	ENSSLDG00000002847	NID2 (ENSSLDG00000002699)	rtraf (ENSSLDG00000002632)	sap18 (ENSSLDG00000002570)	ENSSLDG00000002541	GJA3 (ENSSLDG00000002519)	ENSSLDG00000002479	ENSSLDG00000002461	ENSSLDG00000002456	VANGL1 (ENSSLDG00000002386) #22	ENSSLDG00000002324 #23	poglut1 (ENSSLDG00000002308)	timmdc1 (ENSSLDG00000002294)	abcc4 (ENSSLDG00000001650)
Greater amberjack	MODERN SPECIES	45	acp2 (ENSSDUG00000010314)	gpr137c (ENSSDUG00000010292)	TXNDC16 (ENSSDUG00000010258)	ptger2a (ENSSDUG00000010181)	ENSSDUG00000010150	ENSSDUG00000010108	NID2 (ENSSDUG00000010018)	rtraf (ENSSDUG00000009986)	sap18 (ENSSDUG00000009906)	ENSSDUG00000009836	GJA3 (ENSSDUG00000009758)	ENSSDUG00000009702	ENSSDUG00000009688	ENSSDUG00000009674	ENSSDUG00000009668	VANGL1 (ENSSDUG00000009639) #22	ENSSDUG00000009612 #23	poglut1 (ENSSDUG00000009584)	timmdc1 (ENSSDUG00000009554)	abcc4 (ENSSDUG00000009498)	abcc4 (ENSSDUG00000009429)	cldn10a (ENSSDUG00000009409)	ENSSDUG00000009392	CLDN10 (ENSSDUG00000009377)	dzip1 (ENSSDUG00000009319)	ENSSDUG00000009287	oxgr1a.2 (ENSSDUG00000009281)	klhl41b (ENSSDUG00000009260)	ENSSDUG00000009149	atp5f1b (ENSSDUG00000009115)	ENSSDUG00000009035
Barramundi perch	MODERN SPECIES	277									rtraf (ENSLCAG00010002424)	sap18 (ENSLCAG00010002421)	ENSLCAG00010002416	GJA3 (ENSLCAG00010002410)	ENSLCAG00010002407	ENSLCAG00010002405	ENSLCAG00010002403	VANGL1 (ENSLCAG00010002398) #22	ENSLCAG00010002394 #23	poglut1 (ENSLCAG00010002390)	timmdc1 (ENSLCAG00010002386)	dpp4 (ENSLCAG00010001330)	gca (ENSLCAG00010001011)	KCNH7 (ENSLCAG00010000922)	ENSLCAG00010000868	ENSLCAG00010000862	ENSLCAG00010000858	scn1lab (ENSLCAG00010000562)	CSRNP3 (ENSLCAG00010000217)	ENSLCAG00010024519	ENSLCAG00010024512	ENSLCAG00010024505	B3GALT1 (ENSLCAG00010024500)
Eupercaria	ANCESTRAL SPECIES	23	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b	ENSGT00940000158446	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a	ENSGT00940000157901	ENSGT00390000005163	ENSGT00390000003152	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00390000009178	ENSGT00940000164246.C.d.b	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000153931.b.b.d	ENSGT00940000153931.b.b.c	ENSGT00940000155232.t.b.a	ENSGT00940000166422	ENSGT00940000155232.t.a.b.b	ENSGT00940000156862	ENSGT00950000183071.a.a.a.e.b	ENSGT01030000234621.F.c	ENSGT00940000158859.f	ENSGT00940000163195.B.a	ENSGT00550000074800.a.b	ENSGT00940000158665.d
Tetraodontidae	ANCESTRAL SPECIES	22	ENSGT00390000005372.f	ENSGT00940000156972.d	ENSGT00940000153476.b.o.b	ENSGT00940000155995.e.a	ENSGT00940000155972.A	ENSGT00940000156449.b.a	ENSGT00950000183046.a.a.gb	ENSGT00390000005530.a.a	ENSGT00930000150950.b	ENSGT00940000153534.A	ENSGT00390000003758	ENSGT00530000063484.b.b.d.b	ENSGT00940000154342.C	ENSGT00390000009178	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000153931.b.b.d	ENSGT00940000153931.b.b.c	ENSGT00940000155232.t.b.a	ENSGT01050000244864.B.b.a.a	ENSGT01030000234513.B.b.d	ENSGT00390000003152	ENSGT00390000005163	ENSGT00940000157901	ENSGT01050000244902.b.c.a.a	ENSGT00390000006080	ENSGT00940000153986.a	ENSGT00940000158446
Tetraodon	MODERN SPECIES	18	dpp4 (ENSTNIG00000013277)	gcga (ENSTNIG00000013278)	ENSTNIG00000013279	stk24b (ENSTNIG00000013280)	slc15a1b (ENSTNIG00000013281)	ENSTNIG00000013282	bmpr2a (ENSTNIG00000013283)	FAM117B (ENSTNIG00000013284)	ICA1L (ENSTNIG00000013285)	wdr12 (ENSTNIG00000013286)	tmem47 (ENSTNIG00000013287)	ENSTNIG00000000279	dmd (ENSTNIG00000013288)	ENSTNIG00000013289	ENSTNIG00000010331	VANGL1 (ENSTNIG00000010332) #22	ENSTNIG00000010333 #23	poglut1 (ENSTNIG00000010334)	timmdc1 (ENSTNIG00000010335)	abcc4 (ENSTNIG00000010336)	abcc4 (ENSTNIG00000010337)	CLDN10 (ENSTNIG00000010338)	GJA3 (ENSTNIG00000010339)	ENSTNIG00000010340	sap18 (ENSTNIG00000010341)	rtraf (ENSTNIG00000010342)	NID2 (ENSTNIG00000010343)	ptger2a (ENSTNIG00000010344)	TXNDC16 (ENSTNIG00000000818)	gpr137c (ENSTNIG00000010345)	acp2 (ENSTNIG00000010346)
Fugu	MODERN SPECIES	20	gcga (ENSTRUG00000008721)	SLC4A10 (ENSTRUG00000008287)	stk24b (ENSTRUG00000008054)	slc15a1b (ENSTRUG00000007507)	bmpr2a (ENSTRUG00000006256)	FAM117B (ENSTRUG00000006185)	ICA1L (ENSTRUG00000005819)	wdr12 (ENSTRUG00000020447)	nop58 (ENSTRUG00000005053)	ENSTRUG00000005022	tmem47 (ENSTRUG00000028181)	ENSTRUG00000022303	DMD (ENSTRUG00000001903)	wap65-2 (ENSTRUG00000002894)	ENSTRUG00000003636	VANGL1 (ENSTRUG00000003698) #22	ENSTRUG00000004018 #23	poglut1 (ENSTRUG00000004664)	timmdc1 (ENSTRUG00000024010)	abcc4 (ENSTRUG00000006211)	cldn10a (ENSTRUG00000007790)	ENSTRUG00000021588	ENSTRUG00000007919	sap18 (ENSTRUG00000008250)	rtraf (ENSTRUG00000022455)	NID2 (ENSTRUG00000008498)	ptger2a (ENSTRUG00000021655)	TXNDC16 (ENSTRUG00000009266)	gpr137c (ENSTRUG00000009379)	acp2 (ENSTRUG00000009627)	irs2a (ENSTRUG00000009972)
Eupecaria_A	ANCESTRAL SPECIES	23	ENSGT00940000161407.b	ENSGT00940000158446	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a	ENSGT00940000157901	ENSGT00990000203744.a.a	ENSGT00990000203744.b	ENSGT00390000005163	ENSGT00390000003152	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00390000009178	ENSGT00940000164246.C.d.b	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000153931.b.b.d	ENSGT00940000153931.b.b.c	ENSGT00940000155232.t.b.a	ENSGT00940000166422	ENSGT00940000155232.t.a.b.b	ENSGT00940000156862	ENSGT00950000183071.a.a.a.e.b	ENSGT01030000234621.F.c	ENSGT00940000158859.f	ENSGT00940000163195.B.a	ENSGT00550000074800.a.b	ENSGT00940000158665.d
Ballan wrasse	MODERN SPECIES	372	cfap20 (ENSLBEG00000014680)	gpr137c (ENSLBEG00000014747)	ENSLBEG00000014903	ptger2a (ENSLBEG00000015112)	NID2 (ENSLBEG00000015163)	ENSLBEG00000015247	ENSLBEG00000015280	rtraf (ENSLBEG00000015300)	ENSLBEG00000015331	sap18 (ENSLBEG00000015362)	ENSLBEG00000015451	GJA3 (ENSLBEG00000015474)	ENSLBEG00000015505	ENSLBEG00000015534	ENSLBEG00000015542	VANGL1 (ENSLBEG00000015580) #22	ENSLBEG00000015664 #23	poglut1 (ENSLBEG00000015723)	timmdc1 (ENSLBEG00000015817)	abcc4 (ENSLBEG00000015874)	slc5a3a (ENSLBEG00000015949)	ENSLBEG00000016034	ENSLBEG00000016195	GPR180 (ENSLBEG00000016230)	ENSLBEG00000016260	ENSLBEG00000016284	ENSLBEG00000016297	ENSLBEG00000016314	ENSLBEG00000016323
Eupecaria_B	ANCESTRAL SPECIES	23	ENSGT00940000161407.b	ENSGT00940000158446	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a	ENSGT00940000157901	ENSGT00990000203744.a.a	ENSGT00990000203744.b	ENSGT00390000005163	ENSGT00390000003152	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00390000009178	ENSGT00940000164246.C.d.b	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000153931.b.b.d	ENSGT00940000153931.b.b.c	ENSGT00940000155232.t.b.a	ENSGT00940000166422	ENSGT00940000155232.t.a.b.b	ENSGT00940000156862	ENSGT00950000183071.a.a.a.e.b	ENSGT01030000234621.F.c	ENSGT00940000158859.f	ENSGT00940000163195.B.a	ENSGT00550000074800.a.b	ENSGT00940000158665.d
Eupecaria_C	ANCESTRAL SPECIES	27	ENSGT00940000161407.b	ENSGT00940000158446	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a	ENSGT00940000157901	ENSGT00990000203744.a.a	ENSGT00990000203744.b	ENSGT00390000005163	ENSGT00390000003152	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00390000009178	ENSGT00940000164246.C.d.b	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000153931.b.b.d	ENSGT00940000153931.b.b.c	ENSGT00940000155232.t.b.a	ENSGT00940000166422	ENSGT00940000166809	ENSGT00940000155232.t.a.b.b	ENSGT00940000156862	ENSGT00950000183071.a.a.a.e.b	ENSGT01030000234621.F.c	ENSGT00940000158859.f	ENSGT00940000163195.B.a	ENSGT00550000074800.a.b
Gilthead seabream	MODERN SPECIES	16	NALF1 (ENSSAUG00010004805)	lig4 (ENSSAUG00010004807)	irs2a (ENSSAUG00010004809)	acp2 (ENSSAUG00010004810)	gpr137c (ENSSAUG00010004813)	TXNDC16 (ENSSAUG00010004820)	ptger2a (ENSSAUG00010004825)	NID2 (ENSSAUG00010004847)	rtraf (ENSSAUG00010005012)	sap18 (ENSSAUG00010005013)	ENSSAUG00010005014	GJA3 (ENSSAUG00010005016)	ENSSAUG00010005018	ENSSAUG00010005658	ENSSAUG00010005659	VANGL1 (ENSSAUG00010005663) #22	ENSSAUG00010005673 #23	poglut1 (ENSSAUG00010006119)	timmdc1 (ENSSAUG00010006240)	abcc4 (ENSSAUG00010006260)	abcc4 (ENSSAUG00010007938)	cldn10a (ENSSAUG00010007942)	ENSSAUG00010007943	CLDN10 (ENSSAUG00010007944)	dzip1 (ENSSAUG00010007945)	ENSSAUG00010007950	oxgr1a.2 (ENSSAUG00010007951)	klhl41b (ENSSAUG00010007952)	ENSSAUG00010007953	DHRS9 (ENSSAUG00010007966)	atp5f1b (ENSSAUG00010007970)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	31	ENSGT00940000161407.b	ENSGT00940000158446	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a	ENSGT00940000157901	ENSGT00990000203744.a.a	ENSGT00990000203744.b	ENSGT00390000005163	ENSGT00390000003152	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00390000009178	ENSGT00940000164246.C.d.b	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000153931.b.b.d	ENSGT00940000153931.b.b.c	ENSGT00940000155232.t.b.a	ENSGT00940000166422	ENSGT00940000155232.t.a.b.b	ENSGT00940000156862	ENSGT00950000183071.a.a.a.e.b	ENSGT01030000234621.F.c	ENSGT00940000158859.f	ENSGT00940000163195.B.a	ENSGT00550000074800.a.b	ENSGT00940000158665.d
European seabass	MODERN SPECIES	15	lig4 (ENSDLAG00005021884)	irs2a (ENSDLAG00005032065)	ENSDLAG00005021875	ENSDLAG00005021832	gpr137c (ENSDLAG00005030404)	TXNDC16 (ENSDLAG00005021786)	ptger2a (ENSDLAG00005021780)	NID2 (ENSDLAG00005021417)	rtraf (ENSDLAG00005028950)	ENSDLAG00005021388	ENSDLAG00005034705	ENSDLAG00005030988	ENSDLAG00005021309	ENSDLAG00005021299	ENSDLAG00005034835	ENSDLAG00005021289 #22	ENSDLAG00005021034 #23	ENSDLAG00005020769	ENSDLAG00005019646	abcc4 (ENSDLAG00005018693)	cldn10a (ENSDLAG00005027396)	ENSDLAG00005018645	ENSDLAG00005026898	ENSDLAG00005018633	dzip1 (ENSDLAG00005018609)	ENSDLAG00005033567	ENSDLAG00005028973	ENSDLAG00005018591	ENSDLAG00005018479	ENSDLAG00005018338	ENSDLAG00005007877
Large yellow croaker	MODERN SPECIES	486	gpr137c (ENSLCRG00005003874)	TXNDC16 (ENSLCRG00005003867)	ptger2a (ENSLCRG00005003864)	ENSLCRG00005003861	ENSLCRG00005003860	ENSLCRG00005003857	NID2 (ENSLCRG00005003845)	rtraf (ENSLCRG00005003838)	sap18 (ENSLCRG00005003836)	ENSLCRG00005003834	ENSLCRG00005003814	ENSLCRG00005003810	ENSLCRG00005003691	ENSLCRG00005003690	ENSLCRG00005003688	VANGL1 (ENSLCRG00005003685) #22	ENSLCRG00005003569 #23	poglut1 (ENSLCRG00005003484)	timmdc1 (ENSLCRG00005003482)	abcc4 (ENSLCRG00005000935)	cldn10a (ENSLCRG00005000853)	ENSLCRG00005000849	ENSLCRG00005000847	ENSLCRG00005000840	dzip1 (ENSLCRG00005000817)	ENSLCRG00005000809	oxgr1a.2 (ENSLCRG00005023890)	klhl41b (ENSLCRG00005023889)	ENSLCRG00005023888	atp5f1b (ENSLCRG00005023887)	ENSLCRG00005023886
Perciformes	ANCESTRAL SPECIES	24	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b	ENSGT00940000158446	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a	ENSGT00940000157901	ENSGT00390000005163	ENSGT00390000003152	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00390000009178	ENSGT00980000198666	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000153931.b.b.d	ENSGT00940000153931.b.b.c	ENSGT00940000155232.t.b.a	ENSGT00940000166422	ENSGT00940000155232.t.a.b.b	ENSGT00940000156862	ENSGT00950000183071.a.a.a.e.b	ENSGT01030000234621.F.c	ENSGT00940000158859.f	ENSGT00940000163195.B.a	ENSGT00550000074800.a.b	ENSGT00940000158665.d
Perciformes_a	ANCESTRAL SPECIES	25	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b	ENSGT00940000158446	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a	ENSGT00940000157901	ENSGT00390000005163	ENSGT00390000003152	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00390000009178	ENSGT00940000164246.C.d.b	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000153931.b.b.d	ENSGT00940000153931.b.b.c	ENSGT00940000155232.t.b.a	ENSGT00940000166422	ENSGT00940000155232.t.a.b.b	ENSGT00940000156862	ENSGT00950000183071.a.a.a.e.b	ENSGT01030000234621.F.c	ENSGT00940000158859.f	ENSGT00940000163195.B.a	ENSGT00550000074800.a.b	ENSGT00940000158665.d
Channel bull blenny	MODERN SPECIES	11	NALF1 (ENSCGOG00000000422)	lig4 (ENSCGOG00000000420)	irs2a (ENSCGOG00000000419)	acp2 (ENSCGOG00000000409)	gpr137c (ENSCGOG00000000398)	TXNDC16 (ENSCGOG00000000394)	ptger2a (ENSCGOG00000000388)	NID2 (ENSCGOG00000000308)	rtraf (ENSCGOG00000000276)	sap18 (ENSCGOG00000000270)	ENSCGOG00000000269	GJA3 (ENSCGOG00000000231)	ENSCGOG00000000128	ENSCGOG00000000086	ENSCGOG00000000072	VANGL1 (ENSCGOG00000022165) #22	ENSCGOG00000022161 #23	poglut1 (ENSCGOG00000022083)	timmdc1 (ENSCGOG00000022075)	abcc4 (ENSCGOG00000022043)	abcc4 (ENSCGOG00000020410)	cldn10a (ENSCGOG00000020263)	ENSCGOG00000020257	CLDN10 (ENSCGOG00000020256)	dzip1 (ENSCGOG00000020251)	ENSCGOG00000020249	oxgr1a.2 (ENSCGOG00000020248)	klhl41b (ENSCGOG00000020244)	ENSCGOG00000020240	atp5f1b (ENSCGOG00000019843)	ENSCGOG00000019822
Pike perch	MODERN SPECIES	9	lig4 (ENSSLUG00000025858)	irs2a (ENSSLUG00000025860)	acp2 (ENSSLUG00000025861)	gpr137c (ENSSLUG00000025862)	TXNDC16 (ENSSLUG00000025865)	ptger2a (ENSSLUG00000025868)	NID2 (ENSSLUG00000025892)	ENSSLUG00000025900	rtraf (ENSSLUG00000025901)	sap18 (ENSSLUG00000025904)	ENSSLUG00000025905	GJA3 (ENSSLUG00000025906)	ENSSLUG00000025911	ENSSLUG00000025927	ENSSLUG00000025928	VANGL1 (ENSSLUG00000025930) #22	ENSSLUG00000025935 #23	poglut1 (ENSSLUG00000025941)	ENSSLUG00000025943	ENSSLUG00000025944	abcc4 (ENSSLUG00000025952)	cldn10a (ENSSLUG00000002227)	ENSSLUG00000002232	ENSSLUG00000002237	dzip1 (ENSSLUG00000002243)	ENSSLUG00000002259	oxgr1a.2 (ENSSLUG00000002282)	klhl41b (ENSSLUG00000002288)	ENSSLUG00000002298	atp5f1b (ENSSLUG00000002324)	DHRS9 (ENSSLUG00000002416)
Cottioidei	ANCESTRAL SPECIES	24	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b	ENSGT00940000158446	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a	ENSGT00940000157901	ENSGT00390000005163	ENSGT00390000003152	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00390000009178	ENSGT00980000198666	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000153931.b.b.d	ENSGT00940000153931.b.b.c	ENSGT00940000155232.t.b.a	ENSGT00940000166422	ENSGT00940000155232.t.a.b.b	ENSGT00940000156862	ENSGT00950000183071.a.a.a.e.b	ENSGT01030000234621.F.c	ENSGT00940000158859.f	ENSGT00940000163195.B.a	ENSGT00550000074800.a.b	ENSGT00940000158665.d
Lumpfish	MODERN SPECIES	11	irs2a (ENSCLMG00005003306)	acp2 (ENSCLMG00005003304)	gpr137c (ENSCLMG00005003297)	ENSCLMG00005003295	ptger2a (ENSCLMG00005003292)	ENSCLMG00005003284	ENSCLMG00005003273	NID2 (ENSCLMG00005003272)	rtraf (ENSCLMG00005003271)	sap18 (ENSCLMG00005003269)	ENSCLMG00005003261	GJA3 (ENSCLMG00005003012)	ENSCLMG00005002956	ENSCLMG00005002936	ENSCLMG00005002927	VANGL1 (ENSCLMG00005002909) #22	ENSCLMG00005002870 #23	poglut1 (ENSCLMG00005002818)	timmdc1 (ENSCLMG00005020388)	ABCC4 (ENSCLMG00005017677)	abcc4 (ENSCLMG00005017548)	cldn10a (ENSCLMG00005017527)	ENSCLMG00005017526	CLDN10 (ENSCLMG00005017525)	dzip1 (ENSCLMG00005017524)	ENSCLMG00005017519	oxgr1a.2 (ENSCLMG00005017518)	klhl41b (ENSCLMG00005017516)	ENSCLMG00005017514	atp5f1b (ENSCLMG00005017456)	ENSCLMG00005017455
Stickleback	MODERN SPECIES		cpo (ENSGACG00000014144)	cckbra (ENSGACG00000014143)	NALF1 (ENSGACG00000014137)	lig4 (ENSGACG00000014135)	irs2a (ENSGACG00000014133)	acp2 (ENSGACG00000014119)	gpr137c (ENSGACG00000014115)	TXNDC16 (ENSGACG00000014108)	ptger2a (ENSGACG00000014102)	NID2 (ENSGACG00000014091)	rtraf (ENSGACG00000014087)	sap18 (ENSGACG00000014077)	gja3 (ENSGACG00000014074)	ENSGACG00000014054	ENSGACG00000014053	VANGL1 (ENSGACG00000014050) #22	ENSGACG00000014031 #23	poglut1 (ENSGACG00000014014)	timmdc1 (ENSGACG00000014013)	abcc4 (ENSGACG00000013999)	abcc4 (ENSGACG00000013989)	ENSGACG00000013985	dzip1 (ENSGACG00000013980)	ENSGACG00000013976	oxgr1a.2 (ENSGACG00000013975)	klhl41b (ENSGACG00000013970)	ENSGACG00000013961	atp5f1b (ENSGACG00000013952)	ENSGACG00000013941	ABCB11 (ENSGACG00000013935)	B3GALT1 (ENSGACG00000013934)
Ovalentaria	ANCESTRAL SPECIES	23	ENSGT00860000133881	ENSGT00940000161407.b	ENSGT00940000158446	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a	ENSGT00940000157901	ENSGT00990000203744.b	ENSGT00390000005163	ENSGT00390000003152	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00390000009178	ENSGT00940000164246.C.d.b	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000153931.b.b.d	ENSGT00940000153931.b.b.c	ENSGT00940000155232.t.b.a	ENSGT00940000166422	ENSGT00940000155232.t.a.b.b	ENSGT00940000156862	ENSGT00950000183071.a.a.a.e.b	ENSGT01030000234621.F.c	ENSGT00940000158859.f	ENSGT01090000260278	ENSGT00940000163195.B.a	ENSGT00550000074800.a.b
Atherinomorphae	ANCESTRAL SPECIES	24	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a	ENSGT00800000125246	ENSGT00390000018436.b.m.a	ENSGT00990000203744.b	ENSGT00390000018436.b.m.b	ENSGT00940000157901	ENSGT00390000005163	ENSGT00390000003152	ENSGT00980000199433	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00390000009178	ENSGT00940000164246.C.d.b	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000153931.b.b.d	ENSGT00940000153931.b.b.c	ENSGT00940000155232.t.b.a	ENSGT00940000166422	ENSGT00940000155232.t.a.b.b	ENSGT00940000156862	ENSGT00950000183071.a.a.a.e.b	ENSGT01030000234621.F.c	ENSGT00940000158859.f	ENSGT00940000163195.B.a	ENSGT00550000074800.a.b	ENSGT00940000158665.d
Cyprinodontiformes	ANCESTRAL SPECIES	25	ENSGT00940000158446	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a	ENSGT00990000203744.b	ENSGT00390000018436.b.m.b	ENSGT00940000157901	ENSGT00390000005163	ENSGT00390000003152	ENSGT00980000199433	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00390000009178	ENSGT00940000164246.C.d.b	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000153931.b.b.d	ENSGT00940000153931.b.b.c	ENSGT00940000155232.t.b.a	ENSGT00940000166422	ENSGT00940000155232.t.a.b.b	ENSGT00940000156862	ENSGT00950000183071.a.a.a.e.b	ENSGT01030000234621.F.c	ENSGT00940000158859.f	ENSGT00940000163195.B.a	ENSGT00550000074800.a.b	ENSGT00940000158665.d
Aplocheiloidei	ANCESTRAL SPECIES	92	ENSGT00860000133881	ENSGT00940000161407.b	ENSGT00940000158446	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a	ENSGT00990000203744.b	ENSGT00940000157901	ENSGT00390000005163	ENSGT00390000003152	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00390000009178	ENSGT00940000164246.C.d.b	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000153931.b.b.d	ENSGT00940000153931.b.b.c	ENSGT00940000155232.t.b.a	ENSGT00940000166422	ENSGT00940000155232.t.a.b.b	ENSGT00940000156862	ENSGT00950000183071.a.a.a.e.b	ENSGT01030000234621.F.c	ENSGT00940000158859.f	ENSGT00940000163195.B.a	ENSGT00550000074800.a.b	ENSGT00940000158665.d
Mangrove rivulus	MODERN SPECIES	184													GJA3 (ENSKMAG00000005549)	ENSKMAG00000005247	ENSKMAG00000005184	VANGL1 (ENSKMAG00000005153) #22	ENSKMAG00000005113 #23	poglut1 (ENSKMAG00000005082)	ENSKMAG00000005069	abcc4 (ENSKMAG00000005042)	abcc4 (ENSKMAG00000004954)	ENSKMAG00000004923	CLDN10 (ENSKMAG00000004899)	dzip1 (ENSKMAG00000004842)	ENSKMAG00000004824	oxgr1a.2 (ENSKMAG00000004806)	klhl41b (ENSKMAG00000004793)	ENSKMAG00000004751	atp5f1b (ENSKMAG00000004690)	ENSKMAG00000004670	ABCB11 (ENSKMAG00000004525)
Turquoise killifish	MODERN SPECIES	1615	IRS2 (ENSNFUG00015002170)	ACP2 (ENSNFUG00015002107)	GPR137C (ENSNFUG00015002079)	ptger2a (ENSNFUG00015002076)	ENSNFUG00015002071	ENSNFUG00015002066	NID2 (ENSNFUG00015001959)	rtraf (ENSNFUG00015001919)	SAP18 (ENSNFUG00015001902)	ENSNFUG00015001872	GJA3 (ENSNFUG00015001837)	ENSNFUG00015001828	HPX (ENSNFUG00015001761)	ENSNFUG00015001738	NHLH2 (ENSNFUG00015001736)	VANGL1 (ENSNFUG00015001726) #22	POGLUT1 (ENSNFUG00015001713)	ENSNFUG00015001679 #23	timmdc1 (ENSNFUG00015001651)	TMEM163 (ENSNFUG00015001645)	MGAT5 (ENSNFUG00015001636)	clic5a (ENSNFUG00015001627)	enpp4 (ENSNFUG00015001618)	XKR6 (ENSNFUG00015001613)	ENSNFUG00015001602	ENSNFUG00015001593	ENSNFUG00015001581	EN1 (ENSNFUG00015001573)	C1QL2 (ENSNFUG00015001569)	STEAP3 (ENSNFUG00015001564)	ENSNFUG00015001559
Cyprinodontoidei	ANCESTRAL SPECIES	26	ENSGT00940000158446	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a	ENSGT00990000203744.b	ENSGT00390000018436.b.m.b	ENSGT00940000157901	ENSGT00390000005163	ENSGT00390000003152	ENSGT00980000199433	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00390000009178	ENSGT00940000164246.C.d.b	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000153931.b.b.d	ENSGT00940000153931.b.b.c	ENSGT00940000155232.t.b.a	ENSGT00940000166422	ENSGT00940000155232.t.a.b.b	ENSGT00940000156862	ENSGT00950000183071.a.a.a.e.b	ENSGT01030000234621.F.c	ENSGT00940000158859.f	ENSGT00940000163195.B.a	ENSGT00550000074800.a.b	ENSGT00940000158665.d
NAME_4	ANCESTRAL SPECIES	60	ENSGT00940000158446	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a	ENSGT00990000203744.b	ENSGT00390000018436.b.m.b	ENSGT00940000157901	ENSGT00390000005163	ENSGT00390000003152	ENSGT00980000199433	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00390000009178	ENSGT00940000164246.C.d.b	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000153931.b.b.d	ENSGT00940000153931.b.b.c	ENSGT00940000155232.t.b.a	ENSGT00940000166422	ENSGT00940000155232.t.a.b.b	ENSGT00940000156862	ENSGT00950000183071.a.a.a.e.b	ENSGT01030000234621.F.c	ENSGT00940000158859.f	ENSGT00940000163195.B.a	ENSGT00550000074800.a.b	ENSGT00940000158665.d
Sheepshead minnow	MODERN SPECIES	121	acp2 (ENSCVAG00000007925)	gpr137c (ENSCVAG00000007947)	ENSCVAG00000007967	ptger2a (ENSCVAG00000007975)	ENSCVAG00000007991	NID2 (ENSCVAG00000008077)	rtraf (ENSCVAG00000008112)	sap18 (ENSCVAG00000000990)	ENSCVAG00000008144	ENSCVAG00000000888	ENSCVAG00000008181	ENSCVAG00000008184	ENSCVAG00000008192	ENSCVAG00000008204	ENSCVAG00000008210	VANGL1 (ENSCVAG00000008288) #22	CASQ2 (ENSCVAG00000008326) #23	poglut1 (ENSCVAG00000008340)	timmdc1 (ENSCVAG00000008359)	abcc4 (ENSCVAG00000008504)	abcc4 (ENSCVAG00000008600)	cldn10a (ENSCVAG00000008615)	ENSCVAG00000008659	ENSCVAG00000008749	CLDN10 (ENSCVAG00000008794)	DZIP1 (ENSCVAG00000000247)	ENSCVAG00000008842	oxgr1a.2 (ENSCVAG00000008852)	klhl41b (ENSCVAG00000008884)	ENSCVAG00000008896	atp5f1b (ENSCVAG00000008929)
Mummichog	MODERN SPECIES	2355					ENSFHEG00000014882	ENSFHEG00000014839	ENSFHEG00000014673	rtraf (ENSFHEG00000014652)	sap18 (ENSFHEG00000014614)	ENSFHEG00000014593	ENSFHEG00000014572	GJA3 (ENSFHEG00000014544)	ENSFHEG00000014504	ENSFHEG00000014497	ENSFHEG00000014482	VANGL1 (ENSFHEG00000014464) #22	ENSFHEG00000014433 #23	poglut1 (ENSFHEG00000014402)	timmdc1 (ENSFHEG00000014368)	abcc4 (ENSFHEG00000014346)	abcc4 (ENSFHEG00000014180)	ENSFHEG00000013949	cldn10a (ENSFHEG00000013935)	ENSFHEG00000013916	ENSFHEG00000013885	dzip1 (ENSFHEG00000013855)	ENSFHEG00000013714	oxgr1a.2 (ENSFHEG00000013705)	klhl41b (ENSFHEG00000013690)	ENSFHEG00000013669	atp5f1b (ENSFHEG00000000914)
Poeciliinae	ANCESTRAL SPECIES	23	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a	ENSGT00800000125246	ENSGT00940000177331	ENSGT00990000203744.b	ENSGT00390000018436.b.m.b	ENSGT00940000157901	ENSGT00390000005163	ENSGT00390000003152	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00390000009178	ENSGT00940000164246.C.d.b	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000153931.b.b.d	ENSGT00390000013073	ENSGT00390000000292.B	ENSGT00940000157860	ENSGT00940000156365	ENSGT00390000010543.u	ENSGT00940000155318.b.b	ENSGT00390000010543.v	ENSGT01030000234635.a.b.a.b.a	ENSGT00610000086518.b.a.h.a	ENSGT00610000086518.b.a.h.b	ENSGT00940000165423.a.b
Poecilia	ANCESTRAL SPECIES	30	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b	ENSGT00940000158446	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a	ENSGT00940000157901	ENSGT00390000005163	ENSGT00390000003152	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00390000009178	ENSGT00940000164246.C.d.b	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000153931.b.b.d	ENSGT00390000013073	ENSGT00390000000292.B	ENSGT00940000157860	ENSGT00940000156365	ENSGT00390000010543.u	ENSGT00390000010543.v	ENSGT00940000155318.b.b	ENSGT01030000234635.a.b.a.b.a	ENSGT00610000086518.b.a.h.a	ENSGT00610000086518.b.a.h.b	ENSGT00940000165423.a.b
NAME_6	ANCESTRAL SPECIES	410															ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000153931.b.b.d	ENSGT00390000013073	ENSGT00390000000292.B
Amazon molly	MODERN SPECIES	754															ENSPFOG00000020651	VANGL1 (ENSPFOG00000003871) #22	ENSPFOG00000003660 #23	poglut1 (ENSPFOG00000003508)	timmdc1 (ENSPFOG00000003393)	abcc4 (ENSPFOG00000002687)	gart (ENSPFOG00000002306)	n6amt1 (ENSPFOG00000002291)	ENSPFOG00000002268	KCNV2 (ENSPFOG00000002066)	pum3 (ENSPFOG00000001719)	ENSPFOG00000001179	ENSPFOG00000000948
Sailfin molly	MODERN SPECIES	1904															ENSPLAG00000015977	VANGL1 (ENSPLAG00000015990) #22	ENSPLAG00000016020 #23	poglut1 (ENSPLAG00000016030)	timmdc1 (ENSPLAG00000016038)
Guppy	MODERN SPECIES	450	irs2a (ENSPREG00000007313)	ENSPREG00000007299	ENSPREG00000007265	ENSPREG00000007229	ENSPREG00000007209	gpr137c (ENSPREG00000007176)	TXNDC16 (ENSPREG00000007145)	NID2 (ENSPREG00000006869)	rtraf (ENSPREG00000007105)	sap18 (ENSPREG00000006803)	ENSPREG00000006788	ENSPREG00000006749	ENSPREG00000006674	ENSPREG00000006668	ENSPREG00000006658	VANGL1 (ENSPREG00000006642) #22	ENSPREG00000006595 #23	poglut1 (ENSPREG00000006540)	timmdc1 (ENSPREG00000006517)	abcc4 (ENSPREG00000006484)	n6amt1 (ENSPREG00000006451)	gart (ENSPREG00000006412)	NCAM2 (ENSPREG00000006354)	arl13b (ENSPREG00000006291)	ENSPREG00000006273	ENSPREG00000006268
Platyfish	MODERN SPECIES	16	ENSXMAG00000020923	ENSXMAG00000028615	ENSXMAG00000022834	ENSXMAG00000023929	ENSXMAG00000028677	ENSXMAG00000025122	rtraf (ENSXMAG00000015292)	sap18 (ENSXMAG00000028308)	ENSXMAG00000015323	ENSXMAG00000026816	GPR180 (ENSXMAG00000028271)	GJA3 (ENSXMAG00000021680)	ENSXMAG00000002778	ENSXMAG00000024930	ENSXMAG00000020348	VANGL1 (ENSXMAG00000002790) #22	ENSXMAG00000002800 #23	poglut1 (ENSXMAG00000002810)	timmdc1 (ENSXMAG00000027990)	abcc4 (ENSXMAG00000002832)	n6amt1 (ENSXMAG00000002875)	gart (ENSXMAG00000002877)	ENSXMAG00000027926	ENSXMAG00000025308	GPR180 (ENSXMAG00000029125)	ENSXMAG00000002065	arl13b (ENSXMAG00000002089)	ENSXMAG00000002094	FARP1 (ENSXMAG00000002095)	ENSXMAG00000002116	chn1 (ENSXMAG00000002118)
Oryzias	ANCESTRAL SPECIES	26	ENSGT00860000133881	ENSGT00940000161407.b	ENSGT00940000158446	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a	ENSGT00940000157901	ENSGT00390000005163	ENSGT00390000003152	ENSGT00980000199433	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00390000009178	ENSGT00940000164246.C.d.b	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000153931.b.b.d	ENSGT00940000153931.b.b.c	ENSGT00940000166422	ENSGT00940000155232.t.a.b.b	ENSGT00940000156862	ENSGT00950000183071.a.a.a.e.b	ENSGT01030000234621.F.c.a	ENSGT00940000158859.f	ENSGT00940000163195.B.a	ENSGT00550000074800.a.b	ENSGT00940000158665.d	ENSGT00940000157564
Oryzias_a	ANCESTRAL SPECIES	28	ENSGT00860000133881	ENSGT00940000161407.b	ENSGT00940000158446	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a	ENSGT00940000157901	ENSGT00390000005163	ENSGT00390000003152	ENSGT00980000199433	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00390000009178	ENSGT00940000164246.C.d.b	ENSGT00980000198666	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000153931.b.b.d	ENSGT00940000153931.b.b.c.n	ENSGT00940000166422	ENSGT00940000155232.t.a.b.b	ENSGT00940000156862	ENSGT00950000183071.a.a.a.e.b	ENSGT01030000234621.F.c.a	ENSGT00940000158859.f	ENSGT00940000163195.B.a	ENSGT00550000074800.a.b	ENSGT00940000158665.d	ENSGT00940000157564
Chinese medaka	MODERN SPECIES	1280	NALF1 (ENSOSIG00000016542)	lig4 (ENSOSIG00000016541)	irs2a (ENSOSIG00000016539)	acp2 (ENSOSIG00000016537)	gpr137c (ENSOSIG00000016534)	TXNDC16 (ENSOSIG00000016532)	ptger2a (ENSOSIG00000016524)	NID2 (ENSOSIG00000016037)	rtraf (ENSOSIG00000016031)	sap18 (ENSOSIG00000016030)	ENSOSIG00000016029	ENSOSIG00000016028	GJA3 (ENSOSIG00000016027)	ENSOSIG00000014456	ENSOSIG00000014454	VANGL1 (ENSOSIG00000014453) #22	ENSOSIG00000010562 #23	poglut1 (ENSOSIG00000010503)	ENSOSIG00000010414	abcc4 (ENSOSIG00000008756)
Japanese Medaka HdrR	MODERN SPECIES	11	ENSORLG00000029328	lig4 (ENSORLG00000004041)	irs2a (ENSORLG00000004036)	acp2 (ENSORLG00000004029)	gpr137c (ENSORLG00000003931)	TXNDC16 (ENSORLG00000003913)	ptger2a (ENSORLG00000003901)	NID2 (ENSORLG00000003890)	rtraf (ENSORLG00000003840)	sap18 (ENSORLG00000024118)	ENSORLG00000029407	ENSORLG00000003830	ENSORLG00000003822	hpxb (ENSORLG00000003807)	ENSORLG00000026288	VANGL1 (ENSORLG00000003756) #22	ENSORLG00000024738 #23	poglut1 (ENSORLG00000003715)	timmdc1 (ENSORLG00000003696)	ENSORLG00000024538	ENSORLG00000003652	abcc4 (ENSORLG00000021976)	ENSORLG00000003608	ENSORLG00000003599	dzip1 (ENSORLG00000003586)	ENSORLG00000003563	oxgr1a.2 (ENSORLG00000003552)	ENSORLG00000003547	ENSORLG00000025630	atp5f1b (ENSORLG00000003517)	ENSORLG00000003489
Oryzias_b	ANCESTRAL SPECIES	24	ENSGT00940000161407.b	ENSGT00940000158446	ENSGT00940000153986.a	ENSGT00390000006080.c	ENSGT01050000244902.b.c.a.a	ENSGT00390000018436.b.m.a	ENSGT00990000203744.b	ENSGT00390000018436.b.m.b	ENSGT00390000005163	ENSGT00390000003152	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00390000009178	ENSGT00940000164246.C.d.b	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000153931.b.b.d	ENSGT00940000166422	ENSGT00940000155232.t.a.b.b	ENSGT00940000156862	ENSGT00950000183071.a.a.a.e.b	ENSGT01030000234621.F.c.a	ENSGT00940000158859.f	ENSGT00940000163195.B.a	ENSGT00550000074800.a.b	ENSGT00940000158665.d	ENSGT00940000157564	ENSGT00940000156219.e.b
Javanese ricefish	MODERN SPECIES	11	cckbra (ENSOJAG00000000465)	cpo (ENSOJAG00000000417)	NALF1 (ENSOJAG00000000389)	lig4 (ENSOJAG00000000378)	irs2a (ENSOJAG00000000371)	acp2 (ENSOJAG00000000364)	gpr137c (ENSOJAG00000000358)	ENSOJAG00000000354	rtraf (ENSOJAG00000000315)	sap18 (ENSOJAG00000000305)	ENSOJAG00000000299	GJA3 (ENSOJAG00000000292)	ENSOJAG00000000225	ENSOJAG00000000090	ENSOJAG00000000079	VANGL1 (ENSOJAG00000023520) #22	ENSOJAG00000023466 #23	poglut1 (ENSOJAG00000023436)	timmdc1 (ENSOJAG00000023431)	abcc4 (ENSOJAG00000023409)	ENSOJAG00000023247	CLDN10 (ENSOJAG00000023239)	ENSOJAG00000023225	ENSOJAG00000023219	ENSOJAG00000023212	klhl41b (ENSOJAG00000023207)	ENSOJAG00000023182	atp5f1b (ENSOJAG00000023157)	ENSOJAG00000023147	ABCB11 (ENSOJAG00000022235)	ENSOJAG00000022186
Indian medaka	MODERN SPECIES	24	irs2a (ENSOMEG00000000071)	acp2 (ENSOMEG00000003443)	gpr137c (ENSOMEG00000003416)	TXNDC16 (ENSOMEG00000003394)	ptger2a (ENSOMEG00000003371)	ENSOMEG00000003362	ENSOMEG00000003347	ENSOMEG00000003326	rtraf (ENSOMEG00000003305)	sap18 (ENSOMEG00000003276)	ENSOMEG00000003248	GJA3 (ENSOMEG00000003229)	ENSOMEG00000003218	ENSOMEG00000003194	ENSOMEG00000003182	VANGL1 (ENSOMEG00000003172) #22	ENSOMEG00000003106 #23	timmdc1 (ENSOMEG00000003076)	abcc4 (ENSOMEG00000003052)	ENSOMEG00000002954	ENSOMEG00000002937	dzip1 (ENSOMEG00000002920)	ENSOMEG00000002890	ENSOMEG00000002885	klhl41b (ENSOMEG00000002859)	ENSOMEG00000002832	atp5f1b (ENSOMEG00000002774)	DHRS9 (ENSOMEG00000002764)	ABCB11 (ENSOMEG00000002746)	B3GALT1 (ENSOMEG00000002690)	XIRP2 (ENSOMEG00000002684)
Ovalentaria_B	ANCESTRAL SPECIES	22	ENSGT00860000133881	ENSGT00940000161407.b	ENSGT00940000158446	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a	ENSGT00990000203744.b	ENSGT00940000157901	ENSGT00390000005163	ENSGT00390000003152	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00390000009178	ENSGT00940000164246.C.d.b	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000153931.b.b.d	ENSGT00940000153931.b.b.c	ENSGT00940000155232.t.b.a	ENSGT00940000166422	ENSGT00940000155232.t.a.b.b	ENSGT00940000156862	ENSGT00950000183071.a.a.a.e.b	ENSGT01030000234621.F.c	ENSGT00940000158859.f	ENSGT01090000260278	ENSGT00940000163195.B.a	ENSGT00550000074800.a.b
Pomacentridae	ANCESTRAL SPECIES	101	ENSGT00860000133881	ENSGT00940000161407.b	ENSGT00940000158446.d	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a	ENSGT00990000203744.b	ENSGT00940000157901	ENSGT00390000005163	ENSGT00390000003152	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00390000009178	ENSGT00980000198666	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000153931.b.b.d
Pomacentridae_A	ANCESTRAL SPECIES	138	ENSGT00860000133881	ENSGT00940000161407.b	ENSGT00940000158446.d	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a	ENSGT00990000203744.b	ENSGT00940000157901	ENSGT00390000005163	ENSGT00390000003152	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00390000009178	ENSGT00980000198666	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000153931.b.b.d.c
Amphiprion	ANCESTRAL SPECIES	171	ENSGT00860000133881	ENSGT00940000161407.b	ENSGT00940000158446.d	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a	ENSGT00990000203744.b	ENSGT00940000157901	ENSGT00390000005163	ENSGT00390000003152	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00390000009178	ENSGT00980000198666	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000153931.b.b.d.c
Orange clownfish	MODERN SPECIES	16	lig4 (ENSAPEG00000017815)	irs2a (ENSAPEG00000017808)	acp2 (ENSAPEG00000017795)	gpr137c (ENSAPEG00000017784)	ENSAPEG00000017748	ptger2a (ENSAPEG00000017743)	ENSAPEG00000017731	NID2 (ENSAPEG00000017618)	rtraf (ENSAPEG00000017571)	sap18 (ENSAPEG00000017547)	ENSAPEG00000017526	GJA3 (ENSAPEG00000017441)	ENSAPEG00000017349	ENSAPEG00000017329	ENSAPEG00000017320	VANGL1 (ENSAPEG00000017272) #22	ENSAPEG00000017225 #23	poglut1 (ENSAPEG00000017201)	abcc4 (ENSAPEG00000016844)	timmdc1 (ENSAPEG00000016790)	abcc4 (ENSAPEG00000016691)	NBEAL1 (ENSAPEG00000016493)	ENSAPEG00000016452	ENSAPEG00000016440	ENSAPEG00000016426	TMEM163 (ENSAPEG00000016364)	ccnt2b (ENSAPEG00000016213)	ZRANB3 (ENSAPEG00000016183)	ENSAPEG00000016108	ENSAPEG00000016092	rnd3a (ENSAPEG00000016066)
Clown anemonefish	MODERN SPECIES	671	lig4 (ENSAOCG00000011768)	irs2a (ENSAOCG00000002726)	acp2 (ENSAOCG00000011731)	gpr137c (ENSAOCG00000011705)	ENSAOCG00000011684	ptger2a (ENSAOCG00000002143)	NID2 (ENSAOCG00000011544)	ENSAOCG00000011337	rtraf (ENSAOCG00000011309)	sap18 (ENSAOCG00000011273)	ENSAOCG00000011245	GJA3 (ENSAOCG00000002264)	ENSAOCG00000011185	ENSAOCG00000011137	ENSAOCG00000011129	VANGL1 (ENSAOCG00000011117) #22	ENSAOCG00000011055 #23	poglut1 (ENSAOCG00000011011)	TIMMDC1 (ENSAOCG00000010997)	abcc4 (ENSAOCG00000010956)
Spiny chromis	MODERN SPECIES	232	lig4 (ENSAPOG00000000866)	irs2a (ENSAPOG00000006407)	acp2 (ENSAPOG00000006482)	gpr137c (ENSAPOG00000006516)	TXNDC16 (ENSAPOG00000006535)	ptger2a (ENSAPOG00000006550)	ENSAPOG00000006575	NID2 (ENSAPOG00000006960)	rtraf (ENSAPOG00000007040)	sap18 (ENSAPOG00000007060)	ENSAPOG00000007075	GJA3 (ENSAPOG00000007088)	ENSAPOG00000007110	ENSAPOG00000007128	ENSAPOG00000007135	VANGL1 (ENSAPOG00000007189) #22	ENSAPOG00000007240 #23	poglut1 (ENSAPOG00000007285)	TIMMDC1 (ENSAPOG00000007299)	ENSAPOG00000007323
Bicolor damselfish	MODERN SPECIES	1578												GJA3 (ENSSPAG00000003667)	ENSSPAG00000003691	ENSSPAG00000003761	ENSSPAG00000003769	VANGL1 (ENSSPAG00000003780) #22	ENSSPAG00000003805 #23	poglut1 (ENSSPAG00000003840)	ENSSPAG00000003868	ENSSPAG00000003877
Cichlidae	ANCESTRAL SPECIES	30	ENSGT00860000133881	ENSGT00940000161407.b	ENSGT00940000158446	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a	ENSGT00990000203744.b	ENSGT00940000157901	ENSGT00390000005163	ENSGT00390000003152	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00390000009178	ENSGT00940000164246.C.d.b	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000153931.b.b.d.b	ENSGT00940000153931.b.b.d.a	ENSGT00940000153931.b.b.c	ENSGT00940000155232.t.b.a	ENSGT00940000166422	ENSGT00940000155232.t.a.b.b	ENSGT00940000156862	ENSGT00950000183071.a.a.a.e.b	ENSGT01030000234621.F.c	ENSGT00940000158859.f	ENSGT00940000163195.B.a	ENSGT00550000074800.a.b
Midas cichlid	MODERN SPECIES	809	NALF1 (ENSACIG00000018289)	lig4 (ENSACIG00000018309)	irs2a (ENSACIG00000018318)	acp2 (ENSACIG00000018330)	gpr137c (ENSACIG00000018377)	TXNDC16 (ENSACIG00000018418)	ptger2a (ENSACIG00000018453)	NID2 (ENSACIG00000018509)	rtraf (ENSACIG00000018652)	sap18 (ENSACIG00000018672)	ENSACIG00000018683	GJA3 (ENSACIG00000018715)	ENSACIG00000018745	ENSACIG00000018759	ENSACIG00000018769	VANGL1 (ENSACIG00000018773) #22	ENSACIG00000018790 #23	poglut1 (ENSACIG00000018808)	timmdc1 (ENSACIG00000018823)	abcc4 (ENSACIG00000018894)	abcc4 (ENSACIG00000019235)	cldn10a (ENSACIG00000019275)	ENSACIG00000019297	dzip1 (ENSACIG00000019314)	ENSACIG00000019398	oxgr1a.2 (ENSACIG00000019433)	klhl41b (ENSACIG00000019443)	ENSACIG00000019451	atp5f1b (ENSACIG00000019484)	ENSACIG00000019775
Pseudocrenilabrinae	ANCESTRAL SPECIES	25	ENSGT00860000133881	ENSGT00940000161407.b	ENSGT00940000158446	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a	ENSGT00990000203744.b	ENSGT00940000157901	ENSGT00390000005163	ENSGT00390000003152	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00390000009178	ENSGT00940000164246.C.d.b	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000153931.b.b.d.b	ENSGT00940000153931.b.b.d.a	ENSGT00940000153931.b.b.c	ENSGT00940000155232.t.b.a	ENSGT00940000166422	ENSGT00940000155232.t.a.b.b	ENSGT00940000156862	ENSGT00950000183071.a.a.a.e.b	ENSGT01030000234621.F.c	ENSGT00940000158859.f	ENSGT00940000163195.B.a	ENSGT00550000074800.a.b
Nile tilapia	MODERN SPECIES	14	irs2a (ENSONIG00000011968)	acp2 (ENSONIG00000011961)	gpr137c (ENSONIG00000011958)	txndc16 (ENSONIG00000011953)	ENSONIG00000036731	ENSONIG00000029002	ptger2a (ENSONIG00000041344)	NID2 (ENSONIG00000011939)	rtraf (ENSONIG00000011937)	sap18 (ENSONIG00000011935)	ENSONIG00000011934	ENSONIG00000011933	ENSONIG00000011928	ENSONIG00000040619	ENSONIG00000021015	VANGL1 (ENSONIG00000011927) #22	ENSONIG00000011918 #23	poglut1 (ENSONIG00000011917)	ENSONIG00000011916	abcc4 (ENSONIG00000011902)	abcc4 (ENSONIG00000011884)	cldn10a (ENSONIG00000011882)	ENSONIG00000040118	CLDN10 (ENSONIG00000011879)	dzip1 (ENSONIG00000011875)	ENSONIG00000042308	HS6ST3 (ENSONIG00000011874)	oxgr1a.2 (ENSONIG00000021014)	klhl41b (ENSONIG00000011872)	ENSONIG00000011865	atp5f1b (ENSONIG00000008803)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	29	ENSGT00860000133881	ENSGT00940000161407.b	ENSGT00940000158446	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a	ENSGT00990000203744.b.g	ENSGT00940000157901	ENSGT00390000005163	ENSGT00390000003152	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00390000009178	ENSGT00940000164246.C.d.b	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000153931.b.b.d.b.a.b	ENSGT00940000153931.b.b.d.a	ENSGT00940000153931.b.b.c	ENSGT00940000155232.t.b.a	ENSGT00940000166422	ENSGT00940000155232.t.a.b.b	ENSGT00940000156862	ENSGT00950000183071.a.a.a.e.b	ENSGT01030000234621.F.c	ENSGT00940000158859.f	ENSGT00940000163195.B.a	ENSGT00550000074800.a.b
Lyretail cichlid	MODERN SPECIES	405	lig4 (ENSNBRG00000021252)	irs2a (ENSNBRG00000021263)	acp2 (ENSNBRG00000021269)	gpr137c (ENSNBRG00000021282)	ENSNBRG00000021316	ptger2a (ENSNBRG00000021341)	NID2 (ENSNBRG00000021344)	ENSNBRG00000021384	rtraf (ENSNBRG00000021394)	ENSNBRG00000021423	ENSNBRG00000021493	ENSNBRG00000021518	ENSNBRG00000021539	ENSNBRG00000021548	ENSNBRG00000021551	VANGL1 (ENSNBRG00000021560) #22	CASQ2 (ENSNBRG00000021584) #23	poglut1 (ENSNBRG00000021607)	ENSNBRG00000021658	ENSNBRG00000021667	ENSNBRG00000021682	abcc4 (ENSNBRG00000021711)	abcc4 (ENSNBRG00000021778)	cldn10a (ENSNBRG00000021831)	ENSNBRG00000021872	CLDN10 (ENSNBRG00000021894)	ENSNBRG00000021900	ENSNBRG00000021913	oxgr1a.2 (ENSNBRG00000021932)	klhl41b (ENSNBRG00000021951)	ENSNBRG00000022023
Haplochromini	ANCESTRAL SPECIES	26	ENSGT00860000133881	ENSGT00940000161407.b	ENSGT00940000158446	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a	ENSGT00990000203744.b.g	ENSGT00940000157901	ENSGT00390000005163	ENSGT00390000003152	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00390000009178	ENSGT00940000164246.C.d.b	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000153931.b.b.d.b.a.b	ENSGT00940000153931.b.b.d.a	ENSGT00940000153931.b.b.c	ENSGT00940000155232.t.b.a	ENSGT00940000166422	ENSGT00940000155232.t.a.b.b	ENSGT00940000156862	ENSGT00950000183071.a.a.a.e.b	ENSGT01030000234621.F.c	ENSGT00940000158859.f	ENSGT00940000163195.B.a	ENSGT00550000074800.a.b
Haplochromini_A	ANCESTRAL SPECIES	29	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b	ENSGT00940000158446	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a	ENSGT00940000157901	ENSGT00390000005163	ENSGT00390000003152	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00390000009178	ENSGT00940000164246.C.d.b	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000153931.b.b.d.b.a.b	ENSGT00940000153931.b.b.d.a	ENSGT00940000153931.b.b.c	ENSGT00940000155232.t.b.a	ENSGT00940000166422	ENSGT00940000155232.t.a.b.b	ENSGT00940000156862	ENSGT00950000183071.a.a.a.e.b	ENSGT01030000234621.F.c	ENSGT00940000158859.f	ENSGT00940000163195.B.a	ENSGT00550000074800.a.b
P. nyererei	MODERN SPECIES	436							ptger2a (ENSPNYG00000016772)	NID2 (ENSPNYG00000016811)	rtraf (ENSPNYG00000016994)	sap18 (ENSPNYG00000017029)	ENSPNYG00000017048	ENSPNYG00000017061	ENSPNYG00000017085	ENSPNYG00000017156	ENSPNYG00000017170	VANGL1 (ENSPNYG00000017182) #22	ENSPNYG00000017217 #23	poglut1 (ENSPNYG00000017241)	timmdc1 (ENSPNYG00000017273)	abcc4 (ENSPNYG00000017304)	abcc4 (ENSPNYG00000017511)	abcc4 (ENSPNYG00000018031)	cldn10a (ENSPNYG00000018100)	ENSPNYG00000018122	CLDN10 (ENSPNYG00000018143)	dzip1 (ENSPNYG00000018169)	ENSPNYG00000018208	oxgr1a.2 (ENSPNYG00000018210)	klhl41b (ENSPNYG00000018227)	ENSPNYG00000018237	atp5f1b (ENSPNYG00000018291)
Haplochromini_B	ANCESTRAL SPECIES	38	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b	ENSGT00940000158446	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a.a	ENSGT00940000157901	ENSGT00390000005163	ENSGT00390000003152	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00390000009178	ENSGT00940000164246.C.d.b	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000153931.b.b.d.b.a.b	ENSGT00940000153931.b.b.d.a.b	ENSGT00940000153931.b.b.d.a.a	ENSGT00940000153931.b.b.c	ENSGT00940000155232.t.b.a	ENSGT00940000166422	ENSGT00940000155232.t.a.b.b	ENSGT00940000156862	ENSGT00950000183071.a.a.a.e.b	ENSGT01030000234621.F.c	ENSGT00940000158859.f	ENSGT00940000163195.B.a
Eastern happy	MODERN SPECIES	14	irs2a (ENSACLG00000027047)	ENSACLG00000027045	acp2 (ENSACLG00000027034)	gpr137c (ENSACLG00000027019)	TXNDC16 (ENSACLG00000027003)	ENSACLG00000027001	ptger2a (ENSACLG00000026997)	NID2 (ENSACLG00000026927)	rtraf (ENSACLG00000026910)	sap18 (ENSACLG00000026904)	ENSACLG00000026897	ENSACLG00000026893	ENSACLG00000026880	ENSACLG00000026873	ENSACLG00000026865	VANGL1 (ENSACLG00000026843) #22	ENSACLG00000026809 #23	poglut1 (ENSACLG00000026763)	timmdc1 (ENSACLG00000026745)	abcc4 (ENSACLG00000026475)	abcc4 (ENSACLG00000026393)	ENSACLG00000026383	abcc4 (ENSACLG00000026290)	cldn10a (ENSACLG00000026276)	ENSACLG00000026264	CLDN10 (ENSACLG00000026252)	dzip1 (ENSACLG00000026209)	ENSACLG00000026205	oxgr1a.2 (ENSACLG00000026178)	klhl41b (ENSACLG00000026171)	ENSACLG00000026109
Zebra mbuna	MODERN SPECIES	1105	lig4 (ENSMZEG00005001855)	irs2a (ENSMZEG00005001844)	acp2 (ENSMZEG00005001825)	gpr137c (ENSMZEG00005001770)	TXNDC16 (ENSMZEG00005001753)	ENSMZEG00005001740	ptger2a (ENSMZEG00005001734)	NID2 (ENSMZEG00005001685)	rtraf (ENSMZEG00005001641)	sap18 (ENSMZEG00005001627)	ENSMZEG00005001396	ENSMZEG00005000953	ENSMZEG00005000900	ENSMZEG00005000878	ENSMZEG00005000868	VANGL1 (ENSMZEG00005000829) #22	ENSMZEG00005000789 #23	poglut1 (ENSMZEG00005000749)	timmdc1 (ENSMZEG00005000739)	ENSMZEG00005000726	ENSMZEG00005000712	nop58 (ENSMZEG00005000668)	wdr12 (ENSMZEG00005000653)	ICA1L (ENSMZEG00005000645)	FAM117B (ENSMZEG00005000609)	bmpr2a (ENSMZEG00005000531)	ENSMZEG00005000301	slc15a1b (ENSMZEG00005000174)	stk24b (ENSMZEG00005000089)	ENSMZEG00005018124	SLC4A10 (ENSMZEG00005018109)
Burton s mouthbrooder	MODERN SPECIES	711						ptger2a (ENSHBUG00000000655)	ENSHBUG00000021314	NID2 (ENSHBUG00000021550)	rtraf (ENSHBUG00000021593)	sap18 (ENSHBUG00000021639)	ENSHBUG00000021669	ENSHBUG00000021674	ENSHBUG00000021684	ENSHBUG00000021701	ENSHBUG00000021708	VANGL1 (ENSHBUG00000021734) #22	ENSHBUG00000021766 #23	poglut1 (ENSHBUG00000021817)	timmdc1 (ENSHBUG00000021825)	ENSHBUG00000021844	abcc4 (ENSHBUG00000021948)	abcc4 (ENSHBUG00000022376)	abcc4 (ENSHBUG00000022482)
Protacanthopterygii	ANCESTRAL SPECIES	27	ENSGT00950000183009.db.a	ENSGT00940000157267	ENSGT00510000047718.c	ENSGT00950000182895.a.b.v.k	ENSGT00950000182895.a.b.v.j.a	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b	ENSGT00440000033329.b.a.a.c	ENSGT00940000155063.a.b	ENSGT00940000155107.b.a	ENSGT01090000260082.d.a.b.q.a	ENSGT00940000163999.a.c.a.b	ENSGT00940000161095	ENSGT00940000163999.a.c.b.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000172275	ENSGT00390000009178	ENSGT00980000198666	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000156862	ENSGT00940000153931.b.b	ENSGT00940000155232.t.b.a	ENSGT00940000166422	ENSGT00940000155232.t.a.b.b	ENSGT00950000183071.a.a.a.e.b	ENSGT01030000234621.F.c	ENSGT00940000158859.f	ENSGT00940000163195.B.a
Northern pike	MODERN SPECIES	21	ENSELUG00000030506	ENSELUG00000010433	ENSELUG00000009974	ENSELUG00000009935	TSPEAR (ENSELUG00000009812)	ENSELUG00000001518	ENSELUG00000009709	atg9a (ENSELUG00000009602)	ENSELUG00000009573	MAP4K4 (ENSELUG00000009520)	ENSELUG00000009319	ENSELUG00000009290	tlr22 (ENSELUG00000009256)	ENSELUG00000009243	ENSELUG00000009208	VANGL1 (ENSELUG00000009195) #22	ENSELUG00000009144 #23	poglut1 (ENSELUG00000009087)	ENSELUG00000009037	ENSELUG00000009064	SSBP4 (ENSELUG00000008998)	keap1a (ENSELUG00000008917)	crlf1a (ENSELUG00000008880)	odf3l2a (ENSELUG00000008837)	ebi3 (ENSELUG00000008819)	yju2 (ENSELUG00000008776)	shda (ENSELUG00000008738)	theg (ENSELUG00000027610)	PLPP2 (ENSELUG00000025589)	TLE5 (ENSELUG00000028407)	gna11b (ENSELUG00000008649)
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	1833															ENSGT00940000164480.a.a.g.a.b	ENSGT00390000012496.a.c.a.a #22
Huchen	MODERN SPECIES	172			ENSHHUG00000030916	atg9a (ENSHHUG00000030907)	ENSHHUG00000030883	MAP4K4 (ENSHHUG00000029955)	ENSHHUG00000029936	ENSHHUG00000029809	tlr22 (ENSHHUG00000029801)	tlr22 (ENSHHUG00000029734)	tlr22 (ENSHHUG00000029731)	tlr22 (ENSHHUG00000029722)	ENSHHUG00000029490	ENSHHUG00000029488	ENSHHUG00000029487	ENSHHUG00000029469 #22	ENSHHUG00000029378 #23	poglut1 (ENSHHUG00000029368)	timmdc1 (ENSHHUG00000029362)	abcc4 (ENSHHUG00000029338)	abcc4 (ENSHHUG00000028932)	cldn10a (ENSHHUG00000028906)	ENSHHUG00000028901	ENSHHUG00000028894	dzip1 (ENSHHUG00000028878)	ENSHHUG00000028877	OXGR1 (ENSHHUG00000028876)	ENSHHUG00000028873	klhl41b (ENSHHUG00000028841)	ENSHHUG00000028808	atp5f1b (ENSHHUG00000028639)
Salmoninae_a	ANCESTRAL SPECIES	746															ENSGT00940000164480.a.a.g.a.b	ENSGT00390000012496.a.c.a.a #22
Salmo	ANCESTRAL SPECIES	48	ENSGT00390000011514	ENSGT00940000157267.a	ENSGT00510000047718.c	ENSGT00950000182895.a.b.v.j.a.b	ENSGT00390000004977.d.b.e	ENSGT00940000164909.e.b.l	ENSGT00390000014839.b.f.b.a	ENSGT00440000033329.b.a.a.c.a	ENSGT00940000155063.a.b.d	ENSGT01090000260082.d.a.b.q.a.a	ENSGT00940000163999.a.c.a.b.a.b	ENSGT00940000163999.a.c.a.b.a.a.a	ENSGT00940000163999.a.c.a.b.a.a.b	ENSGT00390000009178.h	ENSGT00940000164246.C.d.b.a	ENSGT00390000012496.a.c.a.a #22	ENSGT00390000019377.b.e.c #23	ENSGT00940000158283	ENSGT00390000013817.d	ENSGT00940000153931.b.b.f.a.b	ENSGT00940000153931.b.b.f.b	ENSGT00940000153931.b.b.e.a	ENSGT00940000155232.t.b.a.c	ENSGT00940000166422.a	ENSGT00940000155232.t.a.b.b.j	ENSGT00940000156862.x	ENSGT00950000183071.a.a.a.e.b.f	ENSGT01030000234621.F.c.f	ENSGT00940000158859.f.d	ENSGT00940000163195.B.a.c	ENSGT00550000074800.a.b.d
Atlantic salmon	MODERN SPECIES	7	ENSSSAG00000111098	ENSSSAG00000078456	ENSSSAG00000078382	ENSSSAG00000114816	ENSSSAG00000067494	ENSSSAG00000066692	ENSSSAG00000066649	ENSSSAG00000088381	ENSSSAG00000066641	ENSSSAG00000094502	ENSSSAG00000017255	ENSSSAG00000066645	ENSSSAG00000066499	ENSSSAG00000066492	ENSSSAG00000114461	ENSSSAG00000006259 #22	casq1 (ENSSSAG00000066333) #23	poglut1 (ENSSSAG00000066149)	cc001 (ENSSSAG00000066134)	ENSSSAG00000105015	ENSSSAG00000053987	ENSSSAG00000092235	ENSSSAG00000044835	abcc4 (ENSSSAG00000042175)	cldn10a (ENSSSAG00000107218)	ENSSSAG00000041967	ENSSSAG00000041941	dzip1 (ENSSSAG00000041925)	ENSSSAG00000088957	ENSSSAG00000041914	ENSSSAG00000041864
Salmoninae	ANCESTRAL SPECIES	298															ENSGT00940000164480.a.a.g.b	ENSGT00390000012496.a.c.a.b #22	ENSGT00390000019377.b.e.d.b #23	ENSGT00940000172275	ENSGT00390000013817.c	ENSGT00940000153931.b.b.f.a.a	ENSGT00940000153931.b.b.e.b	ENSGT00940000155232.t.b.b.c	ENSGT00940000166422.b	ENSGT00940000155232.t.a.b.b.i	ENSGT00940000156862.w	ENSGT00950000183071.a.a.a.e.b.e	ENSGT01030000234621.F.c.e	ENSGT00940000158859.f.c	ENSGT00940000163195.B.a.d	ENSGT00550000074800.a.b.c	ENSGT00940000158665.d.g
Salmoninae_a	ANCESTRAL SPECIES	97															ENSGT00940000164480.a.a.g.b	ENSGT00390000012496.a.c.a.b #22	ENSGT00390000019377.b.e.d.b #23	ENSGT00940000172275	ENSGT00390000013817.c	ENSGT00940000153931.b.b.f.a.a	ENSGT00940000153931.b.b.e.b	ENSGT00940000155232.t.b.a	ENSGT00940000166422.b	ENSGT00940000155232.t.a.b.b.i	ENSGT00940000156862.w	ENSGT00950000183071.a.a.a.e.b.e	ENSGT01030000234621.F.c.e	ENSGT00940000158859.f.c	ENSGT00940000163195.B.a.d	ENSGT00550000074800.a.b.c	ENSGT00940000158665.d.g
Salmo	ANCESTRAL SPECIES	370														ENSGT00940000164246.C.d.b.b	ENSGT00940000164480.a.a.g.b	ENSGT00390000012496.a.c.a.b #22
Atlantic salmon	MODERN SPECIES	8	ENSSSAG00000072836	ENSSSAG00000072819	ENSSSAG00000072814	ENSSSAG00000072729	ENSSSAG00000072718	ENSSSAG00000072622	ENSSSAG00000072552	ENSSSAG00000072544	ENSSSAG00000078373	ENSSSAG00000008597	ENSSSAG00000007990	ENSSSAG00000006617	ENSSSAG00000006327	ENSSSAG00000006277	ENSSSAG00000088817	ENSSSAG00000066489 #22	ENSSSAG00000006094 #23	ENSSSAG00000006024	ENSSSAG00000005996	ENSSSAG00000091740	ENSSSAG00000081627	abcc4 (ENSSSAG00000081593)	cldn10a (ENSSSAG00000115005)	ENSSSAG00000081545	ENSSSAG00000081544	dzip1 (ENSSSAG00000081543)	ENSSSAG00000081542	ENSSSAG00000090645	ENSSSAG00000081541	ENSSSAG00000081540	ENSSSAG00000110514
Huchen	MODERN SPECIES	186								ENSHHUG00000027254	atg9a (ENSHHUG00000027230)	ENSHHUG00000027223	ENSHHUG00000026493	ENSHHUG00000026476	ENSHHUG00000026247	ENSHHUG00000026235	ENSHHUG00000026233	VANGL1 (ENSHHUG00000026222) #22	ENSHHUG00000026172 #23	poglut1 (ENSHHUG00000026162)	timmdc1 (ENSHHUG00000026156)	abcc4 (ENSHHUG00000025036)	psen1 (ENSHHUG00000025010)	abcc4 (ENSHHUG00000024486)	ENSHHUG00000024468	ENSHHUG00000024461	ENSHHUG00000024454	dzip1 (ENSHHUG00000024441)	ENSHHUG00000024426	OXGR1 (ENSHHUG00000024425)	klhl41b (ENSHHUG00000024420)	ENSHHUG00000024406	atp5f1b (ENSHHUG00000024265)
Salmoninae	ANCESTRAL SPECIES	308			ENSGT00390000014839.b.e	ENSGT00440000033329.b.a.a.c.a	ENSGT00940000155063.a.b	ENSGT00940000155107.b.a	ENSGT01090000260082.d.a.b.q.a.a	ENSGT00940000163999.a.c.a.b.a.b	ENSGT00940000163999.a.c.a.b.a.a.a	ENSGT00940000159316.yb.b.b	ENSGT01090000260082.d.a.b.q.a.b	ENSGT00390000009178	ENSGT00940000164246.C.d.b.b	ENSGT00940000164480.a.a.g.a.a.a	ENSGT00940000164480.a.a.g.a.a.b	ENSGT00390000012496.a.c.b #22	ENSGT00390000019377.b.e.c #23	ENSGT00940000158283	ENSGT00390000013817.d	ENSGT00940000153931.b.b.f.b	ENSGT00940000153931.b.b.e.a	ENSGT00940000155232.t.b.a	ENSGT00940000166422.a	ENSGT00940000155232.t.a.b.b.j	ENSGT00940000156862.x	ENSGT00950000183071.a.a.a.e.b.f	ENSGT01030000234621.F.c.f	ENSGT00940000158859.f.d	ENSGT00940000163195.B.a.c	ENSGT00550000074800.a.b.d	ENSGT00940000158665.d.h
Salmoninae_a	ANCESTRAL SPECIES	49	ENSGT00510000047718.c	ENSGT00950000182895.a.b.v.j.a.b	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b.f.b	ENSGT00940000176997	ENSGT00390000014839.b.f.a	ENSGT00440000033329.b.a.a.c.b	ENSGT00940000155063.a.b	ENSGT00940000155107.b.a.f	ENSGT01090000260082.d.a.b.q.a.b	ENSGT00390000009178.g	ENSGT00940000164246.C.d.b.b	ENSGT00940000164480.a.a.g.a.a.a	ENSGT00940000164480.a.a.g.a.a.b	ENSGT00390000012496.a.c.b #22	ENSGT00390000019377.b.e.c #23	ENSGT00940000158283	ENSGT00390000013817.d	ENSGT00940000153931.b.b.f.b	ENSGT00940000153931.b.b.e.a	ENSGT00940000166422.a	ENSGT00940000155232.t.a.b.b.j	ENSGT00940000156862.x	ENSGT00950000183071.a.a.a.e.b.f	ENSGT01030000234621.F.c.f	ENSGT00940000158859.f.d	ENSGT00940000163195.B.a.c	ENSGT00550000074800.a.b.d	ENSGT00940000158665.d.h	ENSGT00940000157564.h
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES	43															ENSGT00940000164480.a.a.g.b	ENSGT00390000012496.a.c.b.a #22	ENSGT00390000019377.b.e.d.a.a #23	ENSGT00940000172275	ENSGT01010000229608	ENSGT00940000153931.b.b.f.a.a	ENSGT00940000153931.b.b.e.b	ENSGT00940000155232.t.b.a.f	ENSGT00940000166422.b	ENSGT00940000155232.t.a.b.b.i	ENSGT00940000156862.w	ENSGT00950000183071.a.a.a.e.b.e	ENSGT01030000234621.F.c.e	ENSGT00940000177271.e	ENSGT00940000158859.f.c	ENSGT00940000163195.B.a.d	ENSGT00550000074800.a.b.c
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00390000012496.a.c.b.a #22
Coho salmon	MODERN SPECIES	25	TRA2B (ENSOKIG00005029943)	ENSOKIG00005030068	ENSOKIG00005030481	ENSOKIG00005031012	ENSOKIG00005031101	ENSOKIG00005031163	ENSOKIG00005031464	atg9a (ENSOKIG00005031492)	ENSOKIG00005031604	ENSOKIG00005031728	ENSOKIG00005033595	ENSOKIG00005033685	ENSOKIG00005034452	ENSOKIG00005035334	ENSOKIG00005035364	VANGL1 (ENSOKIG00005035379) #22	ENSOKIG00005035436 #23	POGLUT1 (ENSOKIG00005035758)	ENSOKIG00005035989	ABCC4 (ENSOKIG00005036027)	abcc4 (ENSOKIG00005036908)	cldn10a (ENSOKIG00005039996)	ENSOKIG00005040006	dzip1 (ENSOKIG00005040046)	ENSOKIG00005040074	HS6ST3 (ENSOKIG00005040106)	OXGR1 (ENSOKIG00005040121)	klhl41b (ENSOKIG00005040138)	ENSOKIG00005040191	ENSOKIG00005040207	ENSOKIG00005040276
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES	70	ENSGT00940000155489.a.d	ENSGT00390000011514	ENSGT00940000157267.a	ENSGT00510000047718.c	ENSGT00950000182895.a.b.v.j.a.a	ENSGT00940000164909.e.b.j	ENSGT00390000014839.b.e	ENSGT00440000033329.b.a.a.c.a	ENSGT00940000155063.a.b.f	ENSGT00940000155107.b.a.e	ENSGT01090000260082.d.a.b.q.a.a	ENSGT00940000163999.a.c.a.b.a.b.e.a	ENSGT00940000163999.a.c.a.b.a.a.b	ENSGT00390000009178.h	ENSGT00940000164480.a.a.g.a.a.b	ENSGT00390000012496.a.c.b.b.a #22
Oncorhynchus_a	ANCESTRAL SPECIES	86	ENSGT00390000011514	ENSGT00940000157267.a	ENSGT00510000047718.c	ENSGT00950000182895.a.b.v.j.a.a	ENSGT00940000164909.e.b.i	ENSGT00390000014839.b.f.b	ENSGT00440000033329.b.a.a.c.a	ENSGT00940000155063.a.b.f	ENSGT00940000155107.b.a.e	ENSGT01090000260082.d.a.b.q.a.a	ENSGT00940000163999.a.c.a.b.a.b.f	ENSGT00940000163999.a.c.a.b.a.b.e.a	ENSGT00940000163999.a.c.a.b.a.a.b	ENSGT00390000009178.h	ENSGT00940000164480.a.a.g.a.a.b	ENSGT00390000012496.a.c.b.b.a #22	ENSGT00390000019377.b.e.d.a.b #23
Coho salmon	MODERN SPECIES	7	ENSOKIG00005017083	ATG9A (ENSOKIG00005016974)	ENSOKIG00005016937	ENSOKIG00005016200	ENSOKIG00005016124	ENSOKIG00005016118	ENSOKIG00005013915	ENSOKIG00005013499	ENSOKIG00005013465	ENSOKIG00005013460	ENSOKIG00005013454	ENSOKIG00005013447	tlr22 (ENSOKIG00005013441)	ENSOKIG00005013258	ENSOKIG00005013239	ENSOKIG00005013223 #22	ENSOKIG00005012776 #23	poglut1 (ENSOKIG00005012497)	timmdc1 (ENSOKIG00005012469)	ENSOKIG00005012466	ABCC4 (ENSOKIG00005007877)	abcc4 (ENSOKIG00005004763)	cldn10a (ENSOKIG00005004565)	ENSOKIG00005004541	ENSOKIG00005004438	dzip1 (ENSOKIG00005004375)	ENSOKIG00005004339	OXGR1 (ENSOKIG00005004334)	KLHL41 (ENSOKIG00005004261)	ENSOKIG00005029969	ATP5F1B (ENSOKIG00005029829)
Chinook salmon	MODERN SPECIES	5	TRA2B (ENSOTSG00005022648)	ENSOTSG00005022649	ENSOTSG00005022650	ENSOTSG00005022651	rassf6 (ENSOTSG00005022652)	ENSOTSG00005022654	ENSOTSG00005022655	ENSOTSG00005022691	ENSOTSG00005022693	ENSOTSG00005023916	ENSOTSG00005023952	tlr22 (ENSOTSG00005026606)	ENSOTSG00005026607	ENSOTSG00005026608	ENSOTSG00005026609	VANGL1 (ENSOTSG00005026610) #22	ENSOTSG00005026612 #23	poglut1 (ENSOTSG00005026614)	timmdc1 (ENSOTSG00005026791)	abcc4 (ENSOTSG00005026793)	abcc4 (ENSOTSG00005027263)	ENSOTSG00005035925	ENSOTSG00005035928	dzip1 (ENSOTSG00005035933)	ENSOTSG00005035937	OXGR1 (ENSOTSG00005035939)	klhl41b (ENSOTSG00005035940)	ENSOTSG00005035944	atp5f1b (ENSOTSG00005035950)	ENSOTSG00005036005	ENSOTSG00005036006
Rainbow trout	MODERN SPECIES	9	ENSOMYG00000031847	ENSOMYG00000031943	ENSOMYG00000031982	ENSOMYG00000032031	ENSOMYG00000032074	ENSOMYG00000032093	ENSOMYG00000032300	ENSOMYG00000015966	ENSOMYG00000016156	ENSOMYG00000049322	ENSOMYG00000075427	ENSOMYG00000054440	ENSOMYG00000057949	ENSOMYG00000016163	ENSOMYG00000016165	ENSOMYG00000016168 #22	ENSOMYG00000016209 #23	ENSOMYG00000016525	ENSOMYG00000016590	ENSOMYG00000016730	abcc4 (ENSOMYG00000020308)	cldn10a (ENSOMYG00000020750)	ENSOMYG00000020759	ENSOMYG00000020777	dzip1 (ENSOMYG00000020831)	ENSOMYG00000071918	ENSOMYG00000020861	ENSOMYG00000020869	ENSOMYG00000050148	ENSOMYG00000020874	ENSOMYG00000020921
Oncorhynchus	ANCESTRAL SPECIES	49	ENSGT00730000110871.a.a.a.b	ENSGT00940000157267.b	ENSGT00950000182895.a.b.v.j.a.b	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b.i	ENSGT00390000014839.b.f.b	ENSGT00390000014839.b.f.a	ENSGT00440000033329.b.a.a.c.b	ENSGT00940000155063.a.b.e	ENSGT00940000155107.b.a.f	ENSGT01090000260082.d.a.b.q.a.b	ENSGT00390000009178.g	ENSGT00980000198666	ENSGT00940000164246.C.d.b.b	ENSGT00940000164480.a.a.g.a.a.a	ENSGT00390000012496.a.c.b.b.b #22	ENSGT00390000019377.b.e.d.a.b #23	ENSGT00390000019377.b.e.c #23	ENSGT00940000158283	ENSGT00390000013817.d	ENSGT00940000153931.b.b.f.b	ENSGT00940000153931.b.b.e.a	ENSGT00940000155232.t.b.a.e	ENSGT00940000166422.a	ENSGT00940000155232.t.a.b.b.j	ENSGT00940000156862.x	ENSGT00950000183071.a.a.a.e.b.f	ENSGT01030000234621.F.c.f	ENSGT00940000158859.f.d	ENSGT00940000163195.B.a.c	ENSGT00550000074800.a.b.d
Rainbow trout	MODERN SPECIES	28	ENSOMYG00000007737	ENSOMYG00000007792	ENSOMYG00000029816	ENSOMYG00000030120	ENSOMYG00000030155	ENSOMYG00000077588	ENSOMYG00000055704	ENSOMYG00000030271	ENSOMYG00000030561	ENSOMYG00000030736	ENSOMYG00000030884	ENSOMYG00000031214	ENSOMYG00000033385	ENSOMYG00000035136	ENSOMYG00000057623	ENSOMYG00000035142 #22	ENSOMYG00000035252 #23	ENSOMYG00000035916	ENSOMYG00000068793	ENSOMYG00000036403	abcc4 (ENSOMYG00000038670)	ENSOMYG00000052190	cldn10a (ENSOMYG00000056385)	ENSOMYG00000039815	ENSOMYG00000039825	dzip1 (ENSOMYG00000039832)	ENSOMYG00000039840	ENSOMYG00000039846	ENSOMYG00000039868	ENSOMYG00000039848	ENSOMYG00000039853
Oncorhynchus_a	ANCESTRAL SPECIES	6	ENSGT00950000183009.db.a.b.b	ENSGT00940000155489.a.c.b	ENSGT00730000110871.a.a.a.b	ENSGT00940000157267.b	ENSGT00950000182895.a.b.v.j.a.b	ENSGT00390000004977.d.b	ENSGT00940000176997	ENSGT00390000014839.b.f.a	ENSGT00440000033329.b.a.a.c.b	ENSGT00940000155063.a.b.e	ENSGT00940000155107.b.a.f	ENSGT01090000260082.d.a.b.q.a.b	ENSGT00390000009178.g	ENSGT00980000198666	ENSGT00940000164480.a.a.g.b	ENSGT00390000012496.a.c.b.b.b #22	ENSGT00390000019377.b.e.d.a.a #23	ENSGT00390000019377.b.e.c #23	ENSGT00940000158283	ENSGT00390000013817.d	ENSGT00940000153931.b.b.f.b	ENSGT00940000153931.b.b.e.a	ENSGT00940000155232.t.b.a.e	ENSGT00940000166422.a	ENSGT00940000155232.t.a.b.b.j	ENSGT00940000156862.x	ENSGT00950000183071.a.a.a.e.b.f	ENSGT01030000234621.F.c.f	ENSGT00940000158859.f.d	ENSGT00940000163195.B.a.c	ENSGT00550000074800.a.b.d
Chinook salmon	MODERN SPECIES	31	ENSOTSG00005024146	ENSOTSG00005024147	CARTPT (ENSOTSG00005024148)	ENSOTSG00005024150	ENSOTSG00005024151	NRDC (ENSOTSG00005024162)	ENSOTSG00005024736	atg9a (ENSOTSG00005024738)	ENSOTSG00005024787	ENSOTSG00005024793	ENSOTSG00005025912	ENSOTSG00005025917	ENSOTSG00005028925	ENSOTSG00005029401	ENSOTSG00005029402	ENSOTSG00005029403 #22	ENSOTSG00005029410 #23	ENSOTSG00005029895	ENSOTSG00005029896	abcc4 (ENSOTSG00005029906)	abcc4 (ENSOTSG00005032005)	cldn10a (ENSOTSG00005040988)	ENSOTSG00005040990	ENSOTSG00005040991	dzip1 (ENSOTSG00005040992)	ENSOTSG00005040993	OXGR1 (ENSOTSG00005040994)	uggt1 (ENSOTSG00005040996)	ENSOTSG00005041019	ENSOTSG00005041020	ENSOTSG00005041021
Salmo	ANCESTRAL SPECIES	41	ENSGT01060000250127	ENSGT00540000073890.q.a	ENSGT00940000164904.a.g.b.a	ENSGT00950000182895.a.a.a.b	ENSGT00950000182895.a.b.v.j.a.a	ENSGT00390000004977.d.b.f	ENSGT00940000164909.e.b.k	ENSGT00390000014839.b.f.a	ENSGT00440000033329.b.a.a.c.b	ENSGT00940000155063.a.b.c	ENSGT00940000155107.b.a.f	ENSGT01090000260082.d.a.b.q.a.b	ENSGT00390000009178.g	ENSGT00980000198666	ENSGT00940000164480.a.a.g.a.b	ENSGT00390000012496.a.c.b #22	ENSGT00390000019377.b.e.d.b #23	ENSGT00940000172275	ENSGT00390000013817.c	ENSGT00940000153931.b.b.f.a.a	ENSGT00940000153931.b.b.e.b	ENSGT00940000155232.t.b.a.d	ENSGT00940000166422.b	ENSGT00940000155232.t.a.b.b.i	ENSGT00940000156862.w	ENSGT00950000183071.a.a.a.e.b.e	ENSGT01030000234621.F.c.e	ENSGT00940000158859.f.c	ENSGT00940000163195.B.a.d	ENSGT00550000074800.a.b.c	ENSGT00940000158665.d.g
River trout	DUPLICATION
River trout	MODERN SPECIES	36	ENSSTUG00000050347	TSPEAR (ENSSTUG00000050325)	ENSSTUG00000050311	ENSSTUG00000050304	ENSSTUG00000050258	atg9a (ENSSTUG00000050237)	ENSSTUG00000050230	ENSSTUG00000050054	ENSSTUG00000049993	tlr22 (ENSSTUG00000049985)	tlr22 (ENSSTUG00000049983)	tlr22 (ENSSTUG00000049980)	ENSSTUG00000049977	ENSSTUG00000049974	ENSSTUG00000049972	VANGL1 (ENSSTUG00000049968) #22	ENSSTUG00000049952 #23	poglut1 (ENSSTUG00000049946)	timmdc1 (ENSSTUG00000049944)	abcc4 (ENSSTUG00000049552)	abcc4 (ENSSTUG00000047816)	abcc4 (ENSSTUG00000044947)	cldn10a (ENSSTUG00000044812)	ENSSTUG00000044805	ENSSTUG00000044766	dzip1 (ENSSTUG00000044676)	ENSSTUG00000044661	OXGR1 (ENSSTUG00000044659)	klhl41b (ENSSTUG00000044644)	ENSSTUG00000044490	atp5f1b (ENSSTUG00000044353)
River trout	MODERN SPECIES	32	ENSSTUG00000043590	TRA2B (ENSSTUG00000043611)	ENSSTUG00000043721	ENSSTUG00000043758	ENSSTUG00000044153	ENSSTUG00000044174	ENSSTUG00000044215	atg9a (ENSSTUG00000045300)	ENSSTUG00000045341	ENSSTUG00000045384	ENSSTUG00000046182	ENSSTUG00000046228	ENSSTUG00000046743	ENSSTUG00000047113	ENSSTUG00000047116	ENSSTUG00000047123 #22	ENSSTUG00000047139 #23	ENSSTUG00000047226	ENSSTUG00000047234	abcc4 (ENSSTUG00000047308)	ENSSTUG00000048420	abcc4 (ENSSTUG00000048570)	cldn10a (ENSSTUG00000049365)	ENSSTUG00000049380	ENSSTUG00000049381	dzip1 (ENSSTUG00000049385)	ENSSTUG00000049417	OXGR1 (ENSSTUG00000049418)	klhl41b (ENSSTUG00000049420)	ENSSTUG00000049432	atp5f1b (ENSSTUG00000049519)
Otomorpha	ANCESTRAL SPECIES	417										ENSGT01090000259985.b.a.a.b.f	ENSGT00940000159316	ENSGT01090000260082.d.a.b	ENSGT00390000009178	ENSGT00980000198666	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000172275	ENSGT00940000158283	ENSGT00390000013817	ENSGT01000000214434.B.a.a.a
Otophysi	ANCESTRAL SPECIES	353												ENSGT01090000260082.d.a.b	ENSGT00390000009178	ENSGT00980000198666	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT01000000214434.B.a.a.a	ENSGT00390000011708.a
Characiphysae	ANCESTRAL SPECIES	154												ENSGT01090000260082.d.a.b	ENSGT00940000166972.q.b	ENSGT00940000164246.C.d.b	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT01000000214434.B.a.a.a	ENSGT00390000011708.a	ENSGT00550000074981	ENSGT01060000249008.a	ENSGT00940000162067	ENSGT00940000158619.p	ENSGT00390000006915.c.c.a	ENSGT00390000013608	ENSGT00950000183152.B.c.a	ENSGT00510000047027.c.a	ENSGT00940000160159	ENSGT00940000156445.p
Channel catfish	MODERN SPECIES	18	zgc:175214 (ENSIPUG00000015061)	CALHM1 (ENSIPUG00000015057)	ENSIPUG00000015043	zp3c (ENSIPUG00000015025)	zp3c (ENSIPUG00000014983)	zp3c (ENSIPUG00000014959)	slk (ENSIPUG00000014943)	tsga10 (ENSIPUG00000014880)	ENSIPUG00000014868	ENSIPUG00000014851	ENSIPUG00000014830	ENSIPUG00000014559	hpxb (ENSIPUG00000014483)	ENSIPUG00000014473	Nhlh1 (ENSIPUG00000014462)	vangl1 (ENSIPUG00000014436) #22	ENSIPUG00000014396 #23	poglut1 (ENSIPUG00000014348)	timmdc1 (ENSIPUG00000014286)	zgc:172295 (ENSIPUG00000014171)	zgc:64002 (ENSIPUG00000014154)	pwp2h (ENSIPUG00000014074)	ENSIPUG00000014055	tceanc (ENSIPUG00000014053)	rab9a (ENSIPUG00000014035)	Gpm6b (ENSIPUG00000014001)	gemin8 (ENSIPUG00000013983)	u2af1 (ENSIPUG00000013962)	CBS (ENSIPUG00000013909)	cryaa (ENSIPUG00000013900)	ENSIPUG00000013895
Characiphysae_b	ANCESTRAL SPECIES	45					ENSGT01050000244827.D.b.b.b	ENSGT01030000234567.A.a.a.a.a.b.f	ENSGT00980000198902.a	ENSGT00940000156184.a	ENSGT00940000159205	ENSGT00940000163031.b.a.a	ENSGT01090000259985.b.a.a.b.f	ENSGT01090000260082.d.a.b	ENSGT00940000166972.q.b	ENSGT00940000164246.C.d.b	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT01000000214434.B.a.a.a	ENSGT00390000011708.a	ENSGT00550000074981	ENSGT01060000249008.a	ENSGT00940000162067	ENSGT00940000158619.p	ENSGT00390000006915.c.c.a	ENSGT00390000013608	ENSGT00950000183152.B.c.a	ENSGT00510000047027.c.a	ENSGT00940000160159	ENSGT00940000156445.p
Characoidei	ANCESTRAL SPECIES	42										ENSGT01090000259985.b.a.a.b.f	ENSGT01090000260082.d.a.b	ENSGT00940000163999.a.r.b.a	ENSGT00940000163999.a.r.b.b	ENSGT00940000164246.C.d.b	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT01000000214434.B.a.a.a	ENSGT00390000011708.a	ENSGT00550000074981	ENSGT01060000249008.a	ENSGT00940000162067	ENSGT00940000158619.p	ENSGT00390000006915.c.c.a	ENSGT00390000013608	ENSGT00950000183152.B.c.a	ENSGT00510000047027.c.a	ENSGT00940000160159	ENSGT00940000156445.p
Mexicana tetra	MODERN SPECIES	3	zp3c (ENSAMXG00000035354)	ENSAMXG00000031571	slkb (ENSAMXG00000005356)	tsga10 (ENSAMXG00000005345)	ENSAMXG00000043665	ENSAMXG00000005333	ENSAMXG00000005320	ENSAMXG00000029398	ENSAMXG00000033179	ENSAMXG00000033746	ENSAMXG00000026008	ENSAMXG00000026007	ENSAMXG00000005283	ENSAMXG00000037151	ENSAMXG00000026006	VANGL1 (ENSAMXG00000005275) #22	CASQ2 (ENSAMXG00000038552) #23	poglut1 (ENSAMXG00000040520)	timmdc1 (ENSAMXG00000043134)	zgc:172295 (ENSAMXG00000005230)	zgc:64002 (ENSAMXG00000043311)	ENSAMXG00000029524	chst10 (ENSAMXG00000033225)	ENSAMXG00000005176	MAP4K4 (ENSAMXG00000005146)	ENSAMXG00000030058	ENSAMXG00000035162	ENSAMXG00000031145	cckbra (ENSAMXG00000008203)	ENSAMXG00000038840	NALF1 (ENSAMXG00000039067)
Red-bellied piranha	MODERN SPECIES	163	zp3c (ENSPNAG00000017302)	ENSPNAG00000017318	slkb (ENSPNAG00000017378)	ENSPNAG00000017393	tsga10 (ENSPNAG00000017442)	ENSPNAG00000017459	ENSPNAG00000017483	ENSPNAG00000017562	ENSPNAG00000017570	ENSPNAG00000017592	ENSPNAG00000017597	ENSPNAG00000017622	ENSPNAG00000017668	ENSPNAG00000017677	ENSPNAG00000017692	VANGL1 (ENSPNAG00000017709) #22	ENSPNAG00000017743 #23	poglut1 (ENSPNAG00000017750)	timmdc1 (ENSPNAG00000017764)	zgc:172295 (ENSPNAG00000017825)	zgc:64002 (ENSPNAG00000017834)	pwp2h (ENSPNAG00000017876)	ENSPNAG00000017891	TCEANC (ENSPNAG00000017908)	RAB9A (ENSPNAG00000017938)	gpm6ba (ENSPNAG00000017975)	gemin8 (ENSPNAG00000017992)	ENSPNAG00000018109	cbsa (ENSPNAG00000005487)	cryaa (ENSPNAG00000003511)	ENSPNAG00000018212
Electric eel	MODERN SPECIES	228	si:ch211-243a20.3 (ENSEEEG00000019784)	f8a (ENSEEEG00000019789)	emp1 (ENSEEEG00000019808)	ENSEEEG00000019809	ENSEEEG00000019810	EVI5L (ENSEEEG00000019811)	ddx39aa (ENSEEEG00000019812)	ENSEEEG00000019831	ENSEEEG00000019833	ENSEEEG00000019835	RDX (ENSEEEG00000019891)	ENSEEEG00000021439	ENSEEEG00000021586	ENSEEEG00000021600	ENSEEEG00000021601	VANGL1 (ENSEEEG00000021602) #22	CASQ2 (ENSEEEG00000021604) #23	ENSEEEG00000021608
Cyprinoidei	ANCESTRAL SPECIES	22												ENSGT01090000260082.d.a.b	ENSGT00390000009178	ENSGT00980000198666	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e #23	ENSGT00940000158283	ENSGT00390000013817	ENSGT01000000214434.B.a.a.a	ENSGT00390000011708.a	ENSGT00550000074981	ENSGT00980000198599	ENSGT00940000162067	ENSGT00940000158619.p	ENSGT00390000006915.c.c.a	ENSGT00390000013608	ENSGT00950000183152.B.c.a	ENSGT00510000047027.c.a	ENSGT00940000160159	ENSGT00940000154989
Cyprininae	ANCESTRAL SPECIES	666											ENSGT00940000159316.v.a	ENSGT01090000260082.d.a.b.s.a	ENSGT00390000009178	ENSGT00980000198666	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e.b #23	ENSGT00940000158283.g	ENSGT00390000013817.a.a	ENSGT01000000214434.B.a.a.a.b	ENSGT00390000011708.a.p	ENSGT00550000074981.f	ENSGT00980000198599.e.a
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	18	ENSCARG00000021845	brat1 (ENSCARG00000021850)	ENSCARG00000021863	ENSCARG00000021867	SDK1 (ENSCARG00000021957)	knstrn (ENSCARG00000022346)	ENSCARG00000022473	ENSCARG00000023662	ENSCARG00000023695	ENSCARG00000023700	ENSCARG00000023705	ENSCARG00000023777	ENSCARG00000025572	ENSCARG00000025583	ENSCARG00000025588	VANGL1 (ENSCARG00000025599) #22	ENSCARG00000025612	ENSCARG00000025633 #23	poglut1 (ENSCARG00000025791)	timmdc1 (ENSCARG00000026968)	zgc:172295 (ENSCARG00000027063)	ENSCARG00000027823	ENSCARG00000027833	gpm6ba (ENSCARG00000027843)	gemin8 (ENSCARG00000027879)	ENSCARG00000027899	cbsa (ENSCARG00000028121)	cryaa (ENSCARG00000028356)	ENSCARG00000028364	HSF2BP (ENSCARG00000028417)	ankrd10a (ENSCARG00000028437)
Goldfish	MODERN SPECIES		zgc:77739 (ENSCARG00000002731)	ENSCARG00000002729	SCLT1 (ENSCARG00000002712)	clta (ENSCARG00000002666)	nansa (ENSCARG00000002655)	gne (ENSCARG00000002070)	cplx2l (ENSCARG00000001908)	TMOD1 (ENSCARG00000001897)	tdrd7a (ENSCARG00000001819)	stra6l (ENSCARG00000001773)	B4GALT1 (ENSCARG00000001767)	fat1a (ENSCARG00000001286)	casp3a (ENSCARG00000001182)	acsl1a (ENSCARG00000001116)	helt (ENSCARG00000001080)	VANGL1 (ENSCARG00000001076) #22	ENSCARG00000001063 #23	poglut1 (ENSCARG00000001052)	timmdc1 (ENSCARG00000001048)	zgc:172295 (ENSCARG00000000940)	zgc:64002 (ENSCARG00000000891)	pwp2h (ENSCARG00000000863)	ENSCARG00000000843	RAB9A (ENSCARG00000000840)	ENSCARG00000000838	gpm6ba (ENSCARG00000000824)	gemin8 (ENSCARG00000000815)	U2AF1 (ENSCARG00000000812)	ENSCARG00000000805	cbsa (ENSCARG00000000472)	cryaa (ENSCARG00000000303)
Cyprininae_a	ANCESTRAL SPECIES	461									ENSGT00440000033329.b.a.a.a	ENSGT00940000155063.c.b.b	ENSGT00940000159316.v.a	ENSGT01090000260082.d.a.b.s.a	ENSGT00390000009178	ENSGT00940000164246.C.d.b	ENSGT00940000164480.a.b.a	ENSGT00390000012496.a.c #22	ENSGT00390000019377.b.e.b #23	ENSGT00940000158283.g	ENSGT00390000013817.a.a	ENSGT01000000214434.B.a.a.a.b	ENSGT00390000011708.a.p	ENSGT00550000074981.f	ENSGT00980000198599.e.a	ENSGT00940000162067.e	ENSGT00390000006915.c.c.a.d	ENSGT00940000158619.p.d.a
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	107										ENSSGRG00000051662	ENSSGRG00000051584	ENSSGRG00000050058	ENSSGRG00000049937	ENSSGRG00000049936	ENSSGRG00000049935	ENSSGRG00000049933 #22	ENSSGRG00000049932 #23	poglut1 (ENSSGRG00000049685)	timmdc1 (ENSSGRG00000049684)	zgc:172295 (ENSSGRG00000049683)	pwp2h (ENSSGRG00000049672)	ENSSGRG00000049670	ENSSGRG00000049668	RAB9A (ENSSGRG00000049666)	RAB9A (ENSSGRG00000049664)	gpm6ba (ENSSGRG00000049663)	ENSSGRG00000049662	cbsa (ENSSGRG00000049297)	cryaa (ENSSGRG00000049277)	ENSSGRG00000049276	HSF2BP (ENSSGRG00000049275)
Golden-line barbel	MODERN SPECIES	447											ENSSGRG00000033355	ENSSGRG00000033354	ENSSGRG00000033351	ENSSGRG00000033349	ENSSGRG00000033348	VANGL1 (ENSSGRG00000033346) #22	poglut1 (ENSSGRG00000033345)	ENSSGRG00000033288 #23	poglut1 (ENSSGRG00000033286)	zgc:172295 (ENSSGRG00000031867)	ENSSGRG00000031795	pwp2h (ENSSGRG00000031790)	RAB9A (ENSSGRG00000031783)	gpm6ba (ENSSGRG00000031779)	cryaa (ENSSGRG00000031776)	ENSSGRG00000031774	ankrd10a (ENSSGRG00000031773)	ENSSGRG00000031669	ING1 (ENSSGRG00000031666)	CARS2 (ENSSGRG00000031399)	RAB20 (ENSSGRG00000031395)
Common carp reference	MODERN SPECIES	27	trmo (ENSCCRG00000018039)	ENSCCRG00000018046	ENSCCRG00000018048	sh3gl2a (ENSCCRG00000018054)	CNTLN (ENSCCRG00000071812)	bnc2 (ENSCCRG00000056219)	PSIP1 (ENSCCRG00000062862)	ENSCCRG00000081028	ENSCCRG00000039653	ENSCCRG00000079166	ENSCCRG00000043337	ENSCCRG00000070025	ENSCCRG00000024283	ENSCCRG00000070647	ENSCCRG00000082187	ENSCCRG00000034427 #22	ENSCCRG00000034681 #23	poglut1 (ENSCCRG00000034984)	ENSCCRG00000035141	zgc:172295 (ENSCCRG00000060184)	ENSCCRG00000032237	pwp2h (ENSCCRG00000034888)	ENSCCRG00000034956	ENSCCRG00000079225	ENSCCRG00000036614	gpm6ba (ENSCCRG00000058543)	gemin8 (ENSCCRG00000039757)	ENSCCRG00000039764	cbsa (ENSCCRG00000074701)	cryaa (ENSCCRG00000031413)	ENSCCRG00000061857
Clupeocephala	ANCESTRAL SPECIES	23	ENSGT00940000163874	ENSGT00940000158318	ENSGT00950000182906.b.b	ENSGT00390000016696	ENSGT00390000007467	ENSGT00910000144271.C	ENSGT00390000011275	ENSGT00940000162722	ENSGT00940000161651	ENSGT00940000166972	ENSGT00940000155116.a	ENSGT00940000164246.C.d.a	ENSGT00950000182936.a.a.a	ENSGT00940000159415	ENSGT00940000164480.a.a	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000154497.B	ENSGT00940000161679.a	ENSGT00390000015060	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00550000074968	ENSGT00900000141090	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01090000260658	ENSGT01050000244864.C.f	ENSGT01050000244864.D	ENSGT00940000157784.c.d
Euteleosteomorpha	ANCESTRAL SPECIES	6	ENSGT00390000009885	ENSGT00390000016713	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT01030000234540.A.b	ENSGT00940000163715.a	ENSGT00940000155177.a	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000156563.b	ENSGT00940000159150	ENSGT00940000164480.a.a	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000154497.B	ENSGT00940000161679.a	ENSGT00390000015060	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00550000074968	ENSGT00900000141090.t	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01090000260658	ENSGT01050000244864.C.f	ENSGT01050000244864.D	ENSGT00940000164822
Acanthomorphata	ANCESTRAL SPECIES	5	ENSGT00390000009885	ENSGT00390000016713	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT01030000234540.A.b	ENSGT00940000163715.a	ENSGT00940000155177.a	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000156563.b	ENSGT00940000159150	ENSGT00940000164480.a.a	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000154497.B	ENSGT00940000161679.a	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00550000074968	ENSGT00940000177223	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01090000260658	ENSGT01050000244864.D	ENSGT00940000164822	ENSGT00940000175300	ENSGT00940000157784.c.c
Euacanthomorphacea	ANCESTRAL SPECIES	15	ENSGT00390000016713	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT01030000234540.A.b	ENSGT00980000198755	ENSGT00940000163715.a	ENSGT00940000155177.a	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000156563.b	ENSGT00940000159150	ENSGT00940000164480.a.a	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000154497.B	ENSGT00940000161679.a	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00550000074968	ENSGT00940000177223	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01090000260658	ENSGT01050000244864.D	ENSGT00940000164822	ENSGT00940000157784.c.c	ENSGT00940000156556.g
Percomorphaceae	ANCESTRAL SPECIES	23	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT01030000234540.A.b	ENSGT00940000164826	ENSGT00980000198755	ENSGT00940000163715.a	ENSGT00940000155177.a	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000156563.b	ENSGT00940000159150	ENSGT00940000164480.a.a	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000154497.B	ENSGT00940000161679.a	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00550000074968	ENSGT00940000177223	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01090000260658	ENSGT01050000244864.D	ENSGT00940000164822	ENSGT00940000157784.c.c	ENSGT00940000156556.g
Percomorphaceae_B	ANCESTRAL SPECIES	17	ENSGT00390000009885	ENSGT00390000016713	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT01030000234540.A.b	ENSGT00940000163715.a	ENSGT00940000155177.a	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000159150	ENSGT00940000156563.b	ENSGT00940000164480.a.a	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000154497.B	ENSGT00940000161679.a	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00940000177402	ENSGT00550000074968	ENSGT00940000177223	ENSGT00940000173749	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01090000260658	ENSGT01050000244864.D	ENSGT00940000164822
Percomorphaceae_C	ANCESTRAL SPECIES	13	ENSGT00390000009885	ENSGT00390000016713	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT01030000234540.A.b	ENSGT00940000163715.a	ENSGT00940000155177.a	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000156563.b	ENSGT00940000159150	ENSGT00940000164480.a.a	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000154497.B	ENSGT00940000161679.a	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00940000177402	ENSGT00550000074968	ENSGT00940000177223	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01090000260658	ENSGT01050000244864.D	ENSGT00940000164822	ENSGT00940000175300
Percomorphaceae_D	ANCESTRAL SPECIES	12	ENSGT00390000009885	ENSGT00390000016713	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT01030000234540.A.b	ENSGT00940000163715.a	ENSGT00940000155177.a	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000156563.b	ENSGT00940000159150	ENSGT00940000164480.a.a	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000154497.B	ENSGT00940000161679.a	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00940000177402	ENSGT00550000074968	ENSGT00940000177223	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01050000244864.D	ENSGT00940000164822	ENSGT00940000175300	ENSGT00940000157784.c.c
Anabantaria	ANCESTRAL SPECIES	14	ENSGT00390000009885	ENSGT00390000016713	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT00980000198755	ENSGT00940000163715.a	ENSGT00940000155177.a	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000156563.b	ENSGT00940000159150	ENSGT00940000164480.a.a	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000154497.B	ENSGT00940000161679.a	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00550000074968	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01050000244864.D	ENSGT00940000164822	ENSGT00940000157784.c.c	ENSGT00940000156556.g	ENSGT01040000240385.A.b.b.a.b.a.a.b.b	ENSGT00940000159755
Zig-zag eel	MODERN SPECIES	13	mospd2 (ENSMAMG00000013673)	GPR143 (ENSMAMG00000013719)	tbl1x (ENSMAMG00000013752)	ANOS1 (ENSMAMG00000013836)	ENSMAMG00000013886	ENSMAMG00000013933	ENSMAMG00000013976	ENSMAMG00000014042	ENSMAMG00000014050	ENSMAMG00000014081	ENSMAMG00000026128	ENSMAMG00000014140	ENSMAMG00000027350	ENSMAMG00000026040	nhlh2 (ENSMAMG00000014190)	vangl1 (ENSMAMG00000014206) #22	casq2 (ENSMAMG00000014300) #23	ENSMAMG00000014281	ENSMAMG00000014326	DOP1B (ENSMAMG00000014338)	ENSMAMG00000025712	ENSMAMG00000024662	ENSMAMG00000014384	chaf1b (ENSMAMG00000014431)	ENSMAMG00000026547	BCL9 (ENSMAMG00000014495)	acp6 (ENSMAMG00000014510)	gja5a (ENSMAMG00000014526)	gja8a (ENSMAMG00000014556)	ENSMAMG00000028402	ENSMAMG00000026812
Anabantoidei	ANCESTRAL SPECIES	13	ENSGT00940000158730	ENSGT00390000009885	ENSGT00390000016713	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT00980000198755	ENSGT00940000163715.a	ENSGT00940000155177.a	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000156563.b	ENSGT00940000164480.a.a	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000154497.B	ENSGT00940000161679.a	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00550000074968	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01050000244864.D	ENSGT00940000164822	ENSGT00940000157784.c.c	ENSGT00940000156556.g	ENSGT01040000240385.A.b.b.a.b.a.a.b.b	ENSGT00940000159755
Climbing perch	MODERN SPECIES	12	FANCB (ENSATEG00000013219)	mospd2 (ENSATEG00000013197)	ENSATEG00000013144	GPR143 (ENSATEG00000013114)	tbl1x (ENSATEG00000013047)	ANOS1 (ENSATEG00000012963)	ENSATEG00000012934	ENSATEG00000012920	ENSATEG00000012883	ENSATEG00000012821	ENSATEG00000012810	ENSATEG00000012773	ENSATEG00000012769	ENSATEG00000012662	nhlh2 (ENSATEG00000012652)	vangl1 (ENSATEG00000012612) #22	casq2 (ENSATEG00000012550) #23	ENSATEG00000012531	ENSATEG00000012522	DOP1B (ENSATEG00000012362)	ENSATEG00000012346	chaf1b (ENSATEG00000012270)	ENSATEG00000012256	BCL9 (ENSATEG00000012242)	acp6 (ENSATEG00000012231)	gja5a (ENSATEG00000012229)	gja8a (ENSATEG00000012211)	ENSATEG00000012141	ENSATEG00000012167	ENSATEG00000012100	ENSATEG00000012189
Siamese fighting fish	MODERN SPECIES	11	glra2 (ENSBSLG00000018835)	ENSBSLG00000018761	mospd2 (ENSBSLG00000018393)	GPR143 (ENSBSLG00000018360)	tbl1x (ENSBSLG00000018203)	ANOS1 (ENSBSLG00000017955)	ENSBSLG00000017932	ENSBSLG00000017853	klhl6 (ENSBSLG00000017831)	ENSBSLG00000017764	igsf3 (ENSBSLG00000017739)	rpe (ENSBSLG00000017711)	ENSBSLG00000017704	ENSBSLG00000017687	nhlh2 (ENSBSLG00000017680)	vangl1 (ENSBSLG00000017678) #22	KCNE2 (ENSBSLG00000017464)	SLC5A3 (ENSBSLG00000017455)	DOP1B (ENSBSLG00000017345)	ENSBSLG00000017309	chaf1b (ENSBSLG00000017230)	ENSBSLG00000017197	bcl9 (ENSBSLG00000017167)	acp6 (ENSBSLG00000017039)	gja5a (ENSBSLG00000017024)	gja8a (ENSBSLG00000016999)	ENSBSLG00000016948	ENSBSLG00000016915	ENSBSLG00000016883	ENSBSLG00000016862	ENSBSLG00000022930
Carangaria	ANCESTRAL SPECIES	12	ENSGT00940000158730	ENSGT00390000009885	ENSGT00390000016713	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT01030000234540.A.b	ENSGT00940000163715.a	ENSGT00940000155177.a	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000156563.b	ENSGT00940000164480.b	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000154497.B	ENSGT00940000161679.a	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00940000177402	ENSGT00550000074968	ENSGT00940000177223	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01050000244864.D	ENSGT00940000164822	ENSGT00940000175300	ENSGT00940000157784.c.c
Carangaria_A	ANCESTRAL SPECIES	11	ENSGT00940000158730	ENSGT00390000009885	ENSGT00390000016713	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT01030000234540.A.b	ENSGT00940000163715.a	ENSGT00940000155177.a	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000156563.b	ENSGT00940000164480.b	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000154497.B	ENSGT00940000161679.a	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00550000074968	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01050000244864.D	ENSGT00940000164822	ENSGT00940000175300	ENSGT00940000157784.c.c	ENSGT00940000156556.g	ENSGT01040000240385.A.b.b.a.b.a.a.b.b
Barramundi perch	MODERN SPECIES	215	glra2 (ENSLCAG00010006111)	ENSLCAG00010006085	mospd2 (ENSLCAG00010006076)	ENSLCAG00010006064	GPR143 (ENSLCAG00010006058)	tbl1x (ENSLCAG00010006041)	ANOS1 (ENSLCAG00010006006)	ENSLCAG00010005989	klhl6 (ENSLCAG00010005985)	igsf3l (ENSLCAG00010005983)	igsf3 (ENSLCAG00010005973)	rpe (ENSLCAG00010005964)	ackr3a (ENSLCAG00010005960)	ENSLCAG00010005955	ENSLCAG00010005952	vangl1 (ENSLCAG00010005947) #22	casq2 (ENSLCAG00010005727) #23	KCNE2 (ENSLCAG00010005691)	SLC5A3 (ENSLCAG00010005688)	DOP1B (ENSLCAG00010005667)	morc3a (ENSLCAG00010005656)	chaf1b (ENSLCAG00010005642)	ENSLCAG00010005641	bcl9 (ENSLCAG00010005639)	acp6 (ENSLCAG00010005637)	gja5a (ENSLCAG00010005634)	gja8a (ENSLCAG00010005633)
Seriola	ANCESTRAL SPECIES	6	ENSGT00940000158730	ENSGT00390000009885	ENSGT00390000016713	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT01030000234540.A.b	ENSGT00940000163715.a	ENSGT00940000155177.a	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000159150	ENSGT00940000162602	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000154497.B	ENSGT00940000161679.a	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00550000074968	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01050000244864.D	ENSGT00940000164822	ENSGT00940000178262	ENSGT00940000157784.c.c	ENSGT00940000156556.g	ENSGT01040000240385.A.b.b.a.b.a.a.b.b
Yellowtail amberjack	MODERN SPECIES	2951	glra2 (ENSSLDG00000000666)	FANCB (ENSSLDG00000000594)	mospd2 (ENSSLDG00000000356)	ENSSLDG00000000267	GPR143 (ENSSLDG00000000218)	tbl1x (ENSSLDG00000000110)	ANOS1 (ENSSLDG00000020767)	ENSSLDG00000020715	klhl6 (ENSSLDG00000020682)	igsf3l (ENSSLDG00000020668)	igsf3 (ENSSLDG00000020652)	rpe (ENSSLDG00000020636)	ackr3a (ENSSLDG00000020631)	nqo1 (ENSSLDG00000020598)	NHLH2 (ENSSLDG00000020588)	vangl1 (ENSSLDG00000020575) #22	casq2 (ENSSLDG00000020552) #23	KCNE2 (ENSSLDG00000020538)	SLC5A3 (ENSSLDG00000020531)	DOP1B (ENSSLDG00000020392)	ENSSLDG00000020365	ENSSLDG00000020349	chaf1b (ENSSLDG00000020316)	ENSSLDG00000020297	bcl9 (ENSSLDG00000020275)	acp6 (ENSSLDG00000020257)	gja5a (ENSSLDG00000020249)	gja8a (ENSSLDG00000020245)	ENSSLDG00000020230	ENSSLDG00000020218	fstl1b (ENSSLDG00000020188)
Greater amberjack	MODERN SPECIES	21	glra2 (ENSSDUG00000003466)	FANCB (ENSSDUG00000003511)	mospd2 (ENSSDUG00000003571)	asb5b (ENSSDUG00000003624)	GPR143 (ENSSDUG00000003740)	tbl1x (ENSSDUG00000003760)	ANOS1 (ENSSDUG00000003815)	ENSSDUG00000003866	klhl6 (ENSSDUG00000003926)	igsf3l (ENSSDUG00000003950)	igsf3 (ENSSDUG00000003975)	rpe (ENSSDUG00000003988)	ackr3a (ENSSDUG00000004014)	nqo1 (ENSSDUG00000004023)	NHLH2 (ENSSDUG00000004061)	vangl1 (ENSSDUG00000004075) #22	casq2 (ENSSDUG00000004187) #23	KCNE2 (ENSSDUG00000004217)	SLC5A3 (ENSSDUG00000004227)	DOP1B (ENSSDUG00000004238)	ENSSDUG00000004276	morc3a (ENSSDUG00000004285)	chaf1b (ENSSDUG00000004318)	ENSSDUG00000004330	bcl9 (ENSSDUG00000004346)	acp6 (ENSSDUG00000004360)	gja5a (ENSSDUG00000004370)	gja8a (ENSSDUG00000004379)	ENSSDUG00000004402	fstl1b (ENSSDUG00000004459)	LRRC58 (ENSSDUG00000004505)
Pleuronectoidei	ANCESTRAL SPECIES	9	ENSGT00940000158730	ENSGT00390000009885	ENSGT00390000016713	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT01030000234540.A.b	ENSGT00940000163715.a	ENSGT00940000155177.a	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000156563.b	ENSGT00940000164480.b	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000154497.B	ENSGT00940000161679.a	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00940000177402	ENSGT00550000074968	ENSGT00940000177223	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01050000244864.D	ENSGT00940000164822	ENSGT00940000157784.c.c	ENSGT00940000156556.g
Turbot	MODERN SPECIES	5	mospd2 (ENSSMAG00000017586)	ENSSMAG00000017665	GPR143 (ENSSMAG00000017701)	tbl1x (ENSSMAG00000017740)	ANOS1 (ENSSMAG00000017769)	ENSSMAG00000035212	ENSSMAG00000032039	ENSSMAG00000017851	ENSSMAG00000017867	ENSSMAG00000017902	ENSSMAG00000017925	ENSSMAG00000017942	ENSSMAG00000017947	ENSSMAG00000017954	nhlh2 (ENSSMAG00000037300)	vangl1 (ENSSMAG00000017970) #22	casq2 (ENSSMAG00000017981) #23	ENSSMAG00000033370	ENSSMAG00000025292	ENSSMAG00000018178	ENSSMAG00000018185	chaf1b (ENSSMAG00000018196)	ENSSMAG00000018225	BCL9 (ENSSMAG00000018243)	acp6 (ENSSMAG00000018293)	GJA5 (ENSSMAG00000018298)	gja8a (ENSSMAG00000007614)	ENSSMAG00000018316	fstl1b (ENSSMAG00000018358)	LRRC58 (ENSSMAG00000018367)	GPR156 (ENSSMAG00000018385)
Tongue sole	MODERN SPECIES	7	hycc2 (ENSCSEG00000010372)	ENSCSEG00000010405	ENSCSEG00000010429	MAP3K13 (ENSCSEG00000010489)	pfkl (ENSCSEG00000010541)	TMEM169 (ENSCSEG00000010669)	xrcc5 (ENSCSEG00000010680)	COL6A2 (ENSCSEG00000010759)	MARCHF4 (ENSCSEG00000010778)	SMARCAL1 (ENSCSEG00000010785)	nme9 (ENSCSEG00000010797)	rpe (ENSCSEG00000010822)	ackr3a (ENSCSEG00000010829)	ENSCSEG00000010833	ENSCSEG00000010837	vangl1 (ENSCSEG00000010842) #22	casq2 (ENSCSEG00000010861) #23	ENSCSEG00000010876	SLC5A3 (ENSCSEG00000010879)	DOP1B (ENSCSEG00000010882)	ENSCSEG00000010932	ENSCSEG00000010936	ptprna (ENSCSEG00000010945)	desma (ENSCSEG00000010970)	ENSCSEG00000010988	TMEM198 (ENSCSEG00000010998)	BIN1 (ENSCSEG00000011011)	ihha (ENSCSEG00000011048)	snx4 (ENSCSEG00000011051)	ENSCSEG00000011065	ARSD (ENSCSEG00000011073)
Eupercaria	ANCESTRAL SPECIES	18	ENSGT00390000009885	ENSGT00390000016713	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT01030000234540.A.b	ENSGT00940000163715.a	ENSGT00940000155177.a	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000156563.b	ENSGT00940000159150	ENSGT00940000164480.a.a	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000154497.B	ENSGT00940000161679.a	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00940000177402	ENSGT00550000074968	ENSGT00940000177223	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01090000260658	ENSGT01050000244864.D	ENSGT00940000164822	ENSGT00940000175300
Tetraodontidae	ANCESTRAL SPECIES		ENSGT00390000006915.c.c.b	ENSGT00940000158730	ENSGT00390000009885	ENSGT00390000016713	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT01030000234540.A.b	ENSGT00940000163715.a	ENSGT00940000155177.a	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000156563.b	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000161679.a	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00550000074968	ENSGT00940000177223	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01050000244864.D	ENSGT00940000164822	ENSGT00940000157784.c.c	ENSGT00940000156556.g	ENSGT01040000240385.A.b.b.a.b.a.a.b.b	ENSGT00940000159755
Fugu	MODERN SPECIES		ENSTRUG00000009246	mospd2 (ENSTRUG00000009311)	ENSTRUG00000009477	GPR143 (ENSTRUG00000009593)	tbl1x (ENSTRUG00000009728)	ANOS1 (ENSTRUG00000009929)	ENSTRUG00000031904	ENSTRUG00000001492	ENSTRUG00000002221	klhl6 (ENSTRUG00000010244)	ENSTRUG00000010560	igsf3 (ENSTRUG00000010573)	rpe (ENSTRUG00000010734)	ackr3a (ENSTRUG00000010803)	ENSTRUG00000010839	vangl1 (ENSTRUG00000010956) #22	casq2 (ENSTRUG00000011077) #23	SLC5A3 (ENSTRUG00000011373)	DOP1B (ENSTRUG00000011430)	ENSTRUG00000023542	chaf1b (ENSTRUG00000012075)	ENSTRUG00000030416	bcl9 (ENSTRUG00000012100)	acp6 (ENSTRUG00000012224)	gja5a (ENSTRUG00000012287)	gja8a (ENSTRUG00000012308)	ENSTRUG00000029177	ENSTRUG00000032667	ENSTRUG00000024110	ENSTRUG00000017525	fstl1b (ENSTRUG00000001760)
Tetraodon	MODERN SPECIES	13	RAB9A (ENSTNIG00000001195)	gpm6bb (ENSTNIG00000013958)	glra2 (ENSTNIG00000013957)	FANCB (ENSTNIG00000013956)	mospd2 (ENSTNIG00000013955)	ENSTNIG00000013954	GPR143 (ENSTNIG00000013953)	tbl1x (ENSTNIG00000013952)	ANOS1 (ENSTNIG00000013951)	klhl6 (ENSTNIG00000013950)	ENSTNIG00000013949	igsf3 (ENSTNIG00000013948)	igsf3 (ENSTNIG00000001298)	rpe (ENSTNIG00000013947)	ackr3a (ENSTNIG00000013946)	vangl1 (ENSTNIG00000013945) #22	casq2 (ENSTNIG00000013944) #23	SLC5A3 (ENSTNIG00000013943)	DOP1B (ENSTNIG00000013942)	ENSTNIG00000013941	chaf1b (ENSTNIG00000013940)	bcl9 (ENSTNIG00000013939)	acp6 (ENSTNIG00000013938)	gja5a (ENSTNIG00000002166)	gja8a (ENSTNIG00000013937)	fstl1b (ENSTNIG00000013936)	LRRC58 (ENSTNIG00000013935)	ENSTNIG00000013934	ENSTNIG00000001394	gsk3ba (ENSTNIG00000013933)	nr1i2 (ENSTNIG00000013932)
Eupecaria_A	ANCESTRAL SPECIES	18	ENSGT00390000009885	ENSGT00390000016713	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT01030000234540.A.b	ENSGT00940000163715.a	ENSGT00940000155177.a	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000156563.b	ENSGT00940000159150	ENSGT00940000164480.a.a	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000154497.B	ENSGT00940000161679.a	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00940000177402	ENSGT00550000074968	ENSGT00940000177223	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01090000260658	ENSGT01050000244864.D	ENSGT00940000164822	ENSGT00940000175300
Eupecaria_B	ANCESTRAL SPECIES	18	ENSGT00390000016713	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT01030000234540.A.b	ENSGT00980000198755	ENSGT00940000163715.a	ENSGT00940000155177.a	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000159150	ENSGT00940000156563.b	ENSGT00940000164480.a.a	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000154497.B	ENSGT00940000161679.a	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00550000074968	ENSGT00940000177223	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01090000260658	ENSGT01050000244864.D	ENSGT00940000164822	ENSGT00940000175300	ENSGT00940000178262
Eupecaria_C	ANCESTRAL SPECIES	21	ENSGT00940000158730	ENSGT00390000009885	ENSGT00390000016713	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT01030000234540.A.b	ENSGT00940000163715.a	ENSGT00940000155177.a	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000156563.b	ENSGT00940000164480.a.a	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000154497.B	ENSGT00940000161679.a	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00550000074968	ENSGT00940000177223	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01050000244864.D	ENSGT00940000164822	ENSGT00940000175300	ENSGT00940000157784.c.c	ENSGT00940000156556.g
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	18	ENSGT00390000006915.c.c.b	ENSGT00940000158730	ENSGT00390000009885	ENSGT00390000016713	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT01030000234540.A.b	ENSGT00940000155177.a	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000156563.b	ENSGT00940000164480.a.a	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000154497.B	ENSGT00940000161679.a	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00550000074968	ENSGT00940000177223	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01050000244864.D	ENSGT00940000164822	ENSGT00940000175300	ENSGT00940000157784.c.c	ENSGT00940000156556.g
European seabass	MODERN SPECIES	5	ENSDLAG00005025430	mospd2 (ENSDLAG00005025436)	ENSDLAG00005029153	ENSDLAG00005025452	GPR143 (ENSDLAG00005025455)	tbl1x (ENSDLAG00005025457)	ANOS1 (ENSDLAG00005025466)	ENSDLAG00005025473	ENSDLAG00005025484	ENSDLAG00005025492	ENSDLAG00005025497	ENSDLAG00005032719	ENSDLAG00005025501	ENSDLAG00005030238	nhlh2 (ENSDLAG00005028018)	ENSDLAG00005025518 #22	casq2 (ENSDLAG00005025524) #23	ENSDLAG00005026388	DOP1B (ENSDLAG00005025560)	ENSDLAG00005030393	ENSDLAG00005025564	chaf1b (ENSDLAG00005025565)	ENSDLAG00005025566	BCL9 (ENSDLAG00005025568)	acp6 (ENSDLAG00005033642)	GJA5 (ENSDLAG00005030432)	gja8a (ENSDLAG00005032926)	ENSDLAG00005025579	ENSDLAG00005025580	ENSDLAG00005009959	ENSDLAG00005025582
Large yellow croaker	MODERN SPECIES	490	ofd1 (ENSLCRG00005010366)	gpm6bb (ENSLCRG00005010380)	glra2 (ENSLCRG00005010386)	ENSLCRG00005010389	mospd2 (ENSLCRG00005010404)	ENSLCRG00005011273	GPR143 (ENSLCRG00005011274)	tbl1x (ENSLCRG00005011281)	ANOS1 (ENSLCRG00005011295)	igsf3l (ENSLCRG00005011310)	igsf3 (ENSLCRG00005011321)	rpe (ENSLCRG00005011325)	ACKR3 (ENSLCRG00005011328)	NQO1 (ENSLCRG00005011329)	nhlh2 (ENSLCRG00005011330)	vangl1 (ENSLCRG00005011331) #22	casq2 (ENSLCRG00005011359) #23	KCNE2 (ENSLCRG00005013399)	SLC5A3 (ENSLCRG00005013400)	DOP1B (ENSLCRG00005013402)	morc3a (ENSLCRG00005013407)	chaf1b (ENSLCRG00005013408)	ENSLCRG00005013433	ENSLCRG00005013434	acp6 (ENSLCRG00005013435)	bcl9 (ENSLCRG00005013437)	gja5a (ENSLCRG00005013440)	gja8a (ENSLCRG00005013441)	ENSLCRG00005013442	ENSLCRG00005013443	fstl1b (ENSLCRG00005013445)
Gilthead seabream	MODERN SPECIES	23	ENSSAUG00010015443	mospd2 (ENSSAUG00010015353)	ENSSAUG00010015350	GPR143 (ENSSAUG00010015345)	tbl1x (ENSSAUG00010015343)	ANOS1 (ENSSAUG00010015338)	ENSSAUG00010015334	ENSSAUG00010015320	klhl6 (ENSSAUG00010015319)	igsf3l (ENSSAUG00010015307)	igsf3 (ENSSAUG00010015301)	rpe (ENSSAUG00010015297)	ACKR3 (ENSSAUG00010015295)	ENSSAUG00010015294	nhlh2 (ENSSAUG00010015293)	vangl1 (ENSSAUG00010015290) #22	casq2 (ENSSAUG00010015074) #23	KCNE2 (ENSSAUG00010015058)	SLC5A3 (ENSSAUG00010015057)	DOP1B (ENSSAUG00010015009)	ENSSAUG00010015003	morc3a (ENSSAUG00010015001)	chaf1b (ENSSAUG00010014996)	ENSSAUG00010014994	bcl9 (ENSSAUG00010014993)	acp6 (ENSSAUG00010014991)	gja5a (ENSSAUG00010014990)	gja8a (ENSSAUG00010014989)	ENSSAUG00010014988	ENSSAUG00010014986	ENSSAUG00010014985
Perciformes	ANCESTRAL SPECIES	20	ENSGT00390000009885	ENSGT00390000016713	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT00980000198755	ENSGT00940000163715.a	ENSGT00940000155177.a	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000156563.b	ENSGT00940000159150	ENSGT00940000164480.a.a	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000154497.B	ENSGT00940000161679.a	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00550000074968	ENSGT00940000177223	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01090000260658	ENSGT01050000244864.D	ENSGT00940000164822	ENSGT00940000178262	ENSGT00940000157784.c.c
Cottioidei	ANCESTRAL SPECIES	14	ENSGT00390000009885	ENSGT00390000016713	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT00980000198755	ENSGT00940000163715.a	ENSGT00940000155177.a	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000156563.b	ENSGT00940000159150	ENSGT00940000164480.a.a	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000154497.B	ENSGT00940000161679.a	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00550000074968	ENSGT00940000177223	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01050000244864.D	ENSGT00940000164822	ENSGT00940000157784.c.c	ENSGT00940000156556.g	ENSGT01040000240385.A.b.b.a.b.a.a.b.b
Lumpfish	MODERN SPECIES	13	mospd2 (ENSCLMG00005015294)	ENSCLMG00005015285	GPR143 (ENSCLMG00005015279)	tbl1x (ENSCLMG00005015267)	ANOS1 (ENSCLMG00005015265)	ENSCLMG00005015263	klhl6 (ENSCLMG00005015262)	igsf3l (ENSCLMG00005015260)	igsf3 (ENSCLMG00005015255)	rpe (ENSCLMG00005015254)	ackr3a (ENSCLMG00005015253)	ENSCLMG00005015252	ENSCLMG00005015251	NQO1 (ENSCLMG00005015216)	nhlh2 (ENSCLMG00005015215)	vangl1 (ENSCLMG00005015212) #22	casq2 (ENSCLMG00005015211) #23	KCNE2 (ENSCLMG00005015210)	SLC5A3 (ENSCLMG00005015200)	DOP1B (ENSCLMG00005015198)	morc3a (ENSCLMG00005015197)	chaf1b (ENSCLMG00005015195)	ENSCLMG00005015193	bcl9 (ENSCLMG00005015191)	acp6 (ENSCLMG00005015190)	gja5a (ENSCLMG00005015187)	gja8a (ENSCLMG00005015186)	ENSCLMG00005015185	fstl1b (ENSCLMG00005014977)	LRRC58 (ENSCLMG00005014971)	ENSCLMG00005014969
Stickleback	MODERN SPECIES	16	ANOS1 (ENSGACG00000003830)	klhl6 (ENSGACG00000003820)	igsf3l (ENSGACG00000003818)	igsf3 (ENSGACG00000003812)	rpe (ENSGACG00000003798)	ENSGACG00000003788	ENSGACG00000003783	nqo1 (ENSGACG00000003776)	ENSGACG00000003770	ENSGACG00000003769	nqo1 (ENSGACG00000003764)	nqo1 (ENSGACG00000003762)	ENSGACG00000003754	nqo1 (ENSGACG00000003752)	nhlh2 (ENSGACG00000003751)	vangl1 (ENSGACG00000003745) #22	casq2 (ENSGACG00000003716) #23	KCNE2 (ENSGACG00000003715)	SLC5A3 (ENSGACG00000003713)	DOP1B (ENSGACG00000003701)	ENSGACG00000003694	chaf1b (ENSGACG00000003690)	ENSGACG00000003689	bcl9 (ENSGACG00000003683)	acp6 (ENSGACG00000003672)	gja5a (ENSGACG00000003669)	gja8a (ENSGACG00000003667)	ENSGACG00000003664	fstl1b (ENSGACG00000003648)	ENSGACG00000003646	LRRC58 (ENSGACG00000003643)
Perciformes_a	ANCESTRAL SPECIES	21	ENSGT00390000009885	ENSGT00390000016713	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT01030000234540.A.b	ENSGT00940000163715.a	ENSGT00940000155177.a	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000156563.b	ENSGT00940000159150	ENSGT00940000164480.a.a	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000154497.B	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00550000074968	ENSGT00940000177223	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01090000260658	ENSGT01050000244864.D	ENSGT00940000164822	ENSGT00940000178262	ENSGT00940000157784.c.c	ENSGT00940000156556.g
Pike perch	MODERN SPECIES	1	glra2 (ENSSLUG00000000295)	ENSSLUG00000000284	mospd2 (ENSSLUG00000000271)	ENSSLUG00000000266	GPR143 (ENSSLUG00000000256)	tbl1x (ENSSLUG00000000230)	ANOS1 (ENSSLUG00000000213)	ENSSLUG00000000197	klhl6 (ENSSLUG00000000186)	igsf3l (ENSSLUG00000000172)	igsf3 (ENSSLUG00000000157)	rpe (ENSSLUG00000000148)	ackr3a (ENSSLUG00000000145)	ENSSLUG00000000140	nhlh2 (ENSSLUG00000000137)	vangl1 (ENSSLUG00000000129) #22	casq2 (ENSSLUG00000000084) #23	KCNE2 (ENSSLUG00000000048)	DOP1B (ENSSLUG00000021749)	morc3a (ENSSLUG00000021725)	chaf1b (ENSSLUG00000021711)	ENSSLUG00000021699	acp6 (ENSSLUG00000021684)	gja5a (ENSSLUG00000021675)	gja8a (ENSSLUG00000021669)	ENSSLUG00000021659	fstl1b (ENSSLUG00000021634)	LRRC58 (ENSSLUG00000021623)	GPR156 (ENSSLUG00000021621)	gsk3ba (ENSSLUG00000020985)	nr1i2 (ENSSLUG00000020918)
Channel bull blenny	MODERN SPECIES	13	gpm6bb (ENSCGOG00000022249)	glra2 (ENSCGOG00000022242)	FANCB (ENSCGOG00000022237)	mospd2 (ENSCGOG00000022100)	ENSCGOG00000022096	GPR143 (ENSCGOG00000022078)	tbl1x (ENSCGOG00000021809)	ANOS1 (ENSCGOG00000021760)	ENSCGOG00000021753	klhl6 (ENSCGOG00000021751)	igsf3l (ENSCGOG00000021728)	igsf3 (ENSCGOG00000021723)	rpe (ENSCGOG00000021716)	ackr3a (ENSCGOG00000021715)	nhlh2 (ENSCGOG00000021714)	vangl1 (ENSCGOG00000021713) #22	casq2 (ENSCGOG00000021707) #23	DOP1B (ENSCGOG00000021457)	nqo1 (ENSCGOG00000021438)	morc3a (ENSCGOG00000021429)	chaf1b (ENSCGOG00000021364)	ENSCGOG00000021356	bcl9 (ENSCGOG00000021350)	acp6 (ENSCGOG00000021346)	gja5a (ENSCGOG00000021335)	ENSCGOG00000021334	gja8a (ENSCGOG00000021333)	ENSCGOG00000021332	ENSCGOG00000021330	fstl1b (ENSCGOG00000021315)	LRRC58 (ENSCGOG00000021314)
Ovalentaria	ANCESTRAL SPECIES	14	ENSGT00390000009885	ENSGT00390000016713	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT01030000234540.A.b	ENSGT00940000163715.a	ENSGT00940000155177.a	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000159150	ENSGT00940000156563.b	ENSGT00940000164480.a.a	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000154497.B	ENSGT00940000161679.a	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00940000177402	ENSGT00550000074968	ENSGT00940000177223	ENSGT00940000173749	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01090000260658	ENSGT01050000244864.D	ENSGT00940000164822
Ovalentaria_B	ANCESTRAL SPECIES	12	ENSGT00390000009885	ENSGT00390000016713	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT01030000234540.A.b	ENSGT00940000164826	ENSGT00940000155177.a	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000159150	ENSGT00940000156563.b	ENSGT00940000164480.a.a	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000154497.B	ENSGT00940000161679.a	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00940000177402	ENSGT00550000074968	ENSGT00940000177223	ENSGT00940000173749	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01050000244864.D	ENSGT00940000164822	ENSGT00940000157784.c.c
Pomacentridae	ANCESTRAL SPECIES	17	ENSGT00390000016713	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT01030000234540.A.b	ENSGT00940000164826	ENSGT00940000163715.a	ENSGT00940000155177.a	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000156563.b	ENSGT00940000159150	ENSGT00940000164480.a.a	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000154497.B	ENSGT00940000161679.a	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00550000074968	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01050000244864.D	ENSGT00940000164822	ENSGT00940000157784.c.c	ENSGT00940000156556.g	ENSGT01040000240385.A.b.b.a.b.a.a.b.b	ENSGT00940000159755
Pomacentridae_A	ANCESTRAL SPECIES	14	ENSGT00940000158730	ENSGT00390000009885	ENSGT00390000016713	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT01030000234540.A.b	ENSGT00940000164826	ENSGT00940000155177.a	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000156563.b	ENSGT00940000164480.a.a	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000154497.B	ENSGT00940000161679.a	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00550000074968	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01050000244864.D	ENSGT00940000164822	ENSGT00940000157784.c.c	ENSGT00940000156556.g	ENSGT01040000240385.A.b.b.a.b.a.a.b.b	ENSGT00940000159755
Amphiprion	ANCESTRAL SPECIES	8	ENSGT00940000158730	ENSGT00390000009885	ENSGT00390000016713	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT01030000234540.A.b	ENSGT00940000164826	ENSGT00940000155177.a	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000156563.b	ENSGT00940000164480.a.a	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000154497.B	ENSGT00940000161679.a	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00550000074968	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01050000244864.D	ENSGT00940000164822	ENSGT00940000157784.c.c	ENSGT00940000156556.g	ENSGT01040000240385.A.b.b.a.b.a.a.b.b	ENSGT00940000159755
Orange clownfish	MODERN SPECIES	3	glra2 (ENSAPEG00000024179)	ENSAPEG00000024192	FANCB (ENSAPEG00000024199)	mospd2 (ENSAPEG00000024212)	ENSAPEG00000024230	GPR143 (ENSAPEG00000024242)	tbl1x (ENSAPEG00000024249)	ANOS1 (ENSAPEG00000024268)	ENSAPEG00000024290	igsf3l (ENSAPEG00000024301)	igsf3 (ENSAPEG00000024311)	rpe (ENSAPEG00000024325)	ackr3a (ENSAPEG00000024332)	ENSAPEG00000024334	nhlh2 (ENSAPEG00000024344)	vangl1 (ENSAPEG00000024349) #22	casq2 (ENSAPEG00000024357) #23	KCNE2 (ENSAPEG00000024365)	SLC5A3 (ENSAPEG00000024368)	DOP1B (ENSAPEG00000024373)	morc3a (ENSAPEG00000024391)	chaf1b (ENSAPEG00000024404)	ENSAPEG00000024416	bcl9 (ENSAPEG00000024430)	acp6 (ENSAPEG00000024439)	gja5a (ENSAPEG00000024446)	gja8a (ENSAPEG00000024449)	ENSAPEG00000024456	fstl1b (ENSAPEG00000000309)	LRRC58 (ENSAPEG00000000383)	GPR156 (ENSAPEG00000000409)
Clown anemonefish	MODERN SPECIES	1774											ENSAOCG00000002566	ackr3a (ENSAOCG00000008342)	ENSAOCG00000008337	ENSAOCG00000008326	nhlh2 (ENSAOCG00000008317)	vangl1 (ENSAOCG00000002348) #22	casq2 (ENSAOCG00000008282) #23	KCNE2 (ENSAOCG00000008246)	SLC5A3 (ENSAOCG00000008236)	DOP1B (ENSAOCG00000008220)	morc3a (ENSAOCG00000008123)	chaf1b (ENSAOCG00000008102)	ENSAOCG00000008064	bcl9 (ENSAOCG00000008049)	acp6 (ENSAOCG00000008035)	gja5a (ENSAOCG00000007998)	gja8a (ENSAOCG00000007974)	ENSAOCG00000007956	ENSAOCG00000000450	si:dkey-33c12.12 (ENSAOCG00000007923)	hif1ab (ENSAOCG00000007901)
Spiny chromis	MODERN SPECIES	469															nhlh2 (ENSAPOG00000002819)	vangl1 (ENSAPOG00000002844) #22	casq2 (ENSAPOG00000002876) #23	KCNE2 (ENSAPOG00000002888)	SLC5A3 (ENSAPOG00000002894)	DOP1B (ENSAPOG00000003000)	ENSAPOG00000003043	ENSAPOG00000003055	chaf1b (ENSAPOG00000003088)	ENSAPOG00000003097	bcl9 (ENSAPOG00000003113)	acp6 (ENSAPOG00000003134)	gja5a (ENSAPOG00000003144)	rho (ENSAPOG00000003170)	MAGI1 (ENSAPOG00000003337)	ren (ENSAPOG00000003412)	ENSAPOG00000003429
Bicolor damselfish	MODERN SPECIES	292	gpm6bb (ENSSPAG00000007814)	glra2 (ENSSPAG00000007787)	ENSSPAG00000007738	mospd2 (ENSSPAG00000007669)	ENSSPAG00000007649	GPR143 (ENSSPAG00000007624)	tbl1x (ENSSPAG00000007535)	ANOS1 (ENSSPAG00000007470)	klhl6 (ENSSPAG00000007437)	igsf3l (ENSSPAG00000007418)	igsf3 (ENSSPAG00000007404)	rpe (ENSSPAG00000007370)	ackr3a (ENSSPAG00000007360)	nqo1 (ENSSPAG00000007347)	nhlh2 (ENSSPAG00000007338)	vangl1 (ENSSPAG00000007172) #22	casq2 (ENSSPAG00000007124) #23	KCNE2 (ENSSPAG00000007102)	SLC5A3 (ENSSPAG00000007099)	DOP1B (ENSSPAG00000006986)	morc3a (ENSSPAG00000006940)	chaf1b (ENSSPAG00000006887)	ENSSPAG00000006866	bcl9 (ENSSPAG00000006843)	acp6 (ENSSPAG00000006814)	gja5a (ENSSPAG00000006808)
Cichlidae	ANCESTRAL SPECIES	14	ENSGT00390000006915.c.c.b	ENSGT00940000158730	ENSGT00390000009885	ENSGT00390000016713	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT01030000234540.A.b	ENSGT00940000164826	ENSGT00940000155177.a	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000164480.a.a	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000154497.B	ENSGT00940000161679.a	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00940000177402	ENSGT00550000074968	ENSGT00940000177223	ENSGT00940000173749	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01050000244864.D	ENSGT00940000164822.l.b	ENSGT00940000157784.c.c
Pseudocrenilabrinae	ANCESTRAL SPECIES	15	ENSGT00390000006915.c.c.b	ENSGT00940000158730	ENSGT00390000009885	ENSGT00390000016713	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT01030000234540.A.b	ENSGT00940000164826	ENSGT00940000155177.a	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000164480.a.a	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000154497.B	ENSGT00940000161679.a	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00940000177402	ENSGT00550000074968	ENSGT00940000177223	ENSGT00940000173749	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01050000244864.D	ENSGT00940000164822.l.b	ENSGT00940000157784.c.c
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	14	ENSGT00390000006915.c.c.b	ENSGT00940000158730	ENSGT00390000009885	ENSGT00390000016713	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT01030000234540.A.b	ENSGT00940000164826	ENSGT00940000155177.a	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000164480.a.a	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000154497.B	ENSGT00940000161679.a	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00940000177402	ENSGT00550000074968	ENSGT00940000177223	ENSGT00940000173749	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01050000244864.D	ENSGT00940000164822.k.a.b.a.a.a.a	ENSGT00940000164822.k.a.b.b.a
Haplochromini	ANCESTRAL SPECIES	19	ENSGT00940000158730	ENSGT00390000009885	ENSGT00390000016713	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT01030000234540.A.b	ENSGT00940000164826	ENSGT00940000155177.a.i.a	ENSGT00940000155177.a.i.b	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000164480.a.a	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000154497.B	ENSGT00940000161679.a	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00940000177402	ENSGT00550000074968	ENSGT00940000177223	ENSGT00940000173749	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01050000244864.D	ENSGT00940000164822.k.a.b.a.a.a.a	ENSGT00940000164822.k.a.b.b.a
Burton s mouthbrooder	MODERN SPECIES	311	ENSHBUG00000022795	mospd2 (ENSHBUG00000022824)	ENSHBUG00000022832	GPR143 (ENSHBUG00000022861)	tbl1x (ENSHBUG00000022909)	ANOS1 (ENSHBUG00000022998)	ENSHBUG00000023005	ENSHBUG00000023033	ENSHBUG00000023298	ENSHBUG00000023333	igsf3 (ENSHBUG00000023347)	rpe (ENSHBUG00000023369)	ackr3a (ENSHBUG00000023373)	ENSHBUG00000023391	nhlh2 (ENSHBUG00000023405)	vangl1 (ENSHBUG00000023475) #22	casq2 (ENSHBUG00000023521) #23	KCNE2 (ENSHBUG00000023528)	SLC5A3 (ENSHBUG00000023535)	ENSHBUG00000023545	DOP1B (ENSHBUG00000023676)	morc3a (ENSHBUG00000023707)	chaf1b (ENSHBUG00000023806)	ENSHBUG00000023836	bcl9 (ENSHBUG00000001527)	acp6 (ENSHBUG00000001532)	gja5a (ENSHBUG00000001539)	gja8a (ENSHBUG00000001540)	ENSHBUG00000001548
Haplochromini_A	ANCESTRAL SPECIES	19	ENSGT00940000158730	ENSGT00390000009885	ENSGT00390000016713	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT01030000234540.A.b	ENSGT00940000164826	ENSGT00940000155177.a.i.a	ENSGT00940000155177.a.i.b	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000164480.a.a	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000154497.B	ENSGT00940000161679.a	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00940000177402	ENSGT00550000074968	ENSGT00940000177223	ENSGT00940000173749	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01050000244864.D	ENSGT00940000164822.k.a.b.a.a.a.a	ENSGT00940000164822.k.a.b.b.a
P. nyererei	MODERN SPECIES	304	ofd1 (ENSPNYG00000011783)	ENSPNYG00000011836	glra2 (ENSPNYG00000011852)	ENSPNYG00000011890	mospd2 (ENSPNYG00000011916)	ENSPNYG00000011948	GPR143 (ENSPNYG00000012006)	tbl1x (ENSPNYG00000012036)	ANOS1 (ENSPNYG00000012090)	ENSPNYG00000012130	igsf3l (ENSPNYG00000012155)	igsf3 (ENSPNYG00000012189)	rpe (ENSPNYG00000012213)	ackr3a (ENSPNYG00000012239)	nhlh2 (ENSPNYG00000012244)	vangl1 (ENSPNYG00000012260) #22	casq2 (ENSPNYG00000012288) #23	KCNE2 (ENSPNYG00000012323)	SLC5A3 (ENSPNYG00000012344)	DOP1B (ENSPNYG00000012358)	ENSPNYG00000012414	ENSPNYG00000012436	chaf1b (ENSPNYG00000012461)	ENSPNYG00000012507	ENSPNYG00000012521	bcl9 (ENSPNYG00000012543)	acp6 (ENSPNYG00000012584)	gja5a (ENSPNYG00000012602)	gja8a (ENSPNYG00000012616)	ENSPNYG00000012645	ENSPNYG00000012713
Haplochromini_B	ANCESTRAL SPECIES	17	ENSGT00940000158730	ENSGT00390000009885	ENSGT00390000016713	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT01030000234540.A.b	ENSGT00940000164826	ENSGT00940000155177.a.i.a	ENSGT00940000155177.a.i.b	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000164480.a.a	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000154497.B	ENSGT00940000161679.a	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00940000177402	ENSGT00550000074968	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01050000244864.D	ENSGT00940000164822.k.a.b.a.a.a.a	ENSGT00940000164822.k.a.b.b.a	ENSGT00940000164822.k.a.b.b.b	ENSGT00940000164822.k.a.a.a.b.b
Eastern happy	MODERN SPECIES	7	glra2 (ENSACLG00000006539)	ENSACLG00000005961	mospd2 (ENSACLG00000005925)	ENSACLG00000005897	GPR143 (ENSACLG00000005881)	tbl1x (ENSACLG00000005835)	ANOS1 (ENSACLG00000005803)	ENSACLG00000005794	ENSACLG00000005779	ENSACLG00000005759	ENSACLG00000005742	igsf3 (ENSACLG00000005518)	rpe (ENSACLG00000005497)	ackr3a (ENSACLG00000005485)	nhlh2 (ENSACLG00000005482)	vangl1 (ENSACLG00000005437) #22	casq2 (ENSACLG00000005396) #23	KCNE2 (ENSACLG00000005384)	SLC5A3 (ENSACLG00000005376)	DOP1B (ENSACLG00000005329)	morc3a (ENSACLG00000005265)	chaf1b (ENSACLG00000005219)	ENSACLG00000005189	bcl9 (ENSACLG00000005177)	acp6 (ENSACLG00000005168)	gja5a (ENSACLG00000005160)	gja8a (ENSACLG00000005156)	ENSACLG00000005109	ENSACLG00000005060	ENSACLG00000005039	ENSACLG00000004802
Zebra mbuna	MODERN SPECIES	1098	glra2 (ENSMZEG00005002415)	FANCB (ENSMZEG00005002402)	mospd2 (ENSMZEG00005002380)	ENSMZEG00005002363	GPR143 (ENSMZEG00005002341)	tbl1x (ENSMZEG00005002314)	ANOS1 (ENSMZEG00005002260)	ENSMZEG00005002238	ENSMZEG00005002227	ENSMZEG00005002195	ENSMZEG00005002171	igsf3 (ENSMZEG00005002160)	rpe (ENSMZEG00005002138)	ackr3a (ENSMZEG00005002132)	nhlh2 (ENSMZEG00005002125)	vangl1 (ENSMZEG00005002094) #22	casq2 (ENSMZEG00005002075) #23	KCNE2 (ENSMZEG00005002067)	SLC5A3 (ENSMZEG00005002056)	ENSMZEG00005002052	DOP1B (ENSMZEG00005001983)	ENSMZEG00005001951	ENSMZEG00005001945	chaf1b (ENSMZEG00005001892)	ENSMZEG00005001866	bcl9 (ENSMZEG00005001856)	acp6 (ENSMZEG00005001843)	gja5a (ENSMZEG00005001838)	gja8a (ENSMZEG00005001816)	ENSMZEG00005001804	ENSMZEG00005001797
Lyretail cichlid	MODERN SPECIES	303	gpm6bb (ENSNBRG00000008605)	glra2 (ENSNBRG00000008576)	ENSNBRG00000008536	mospd2 (ENSNBRG00000008495)	ENSNBRG00000008457	GPR143 (ENSNBRG00000008423)	tbl1x (ENSNBRG00000008372)	ANOS1 (ENSNBRG00000008319)	ENSNBRG00000008279	ENSNBRG00000008187	ENSNBRG00000008150	igsf3 (ENSNBRG00000008087)	rpe (ENSNBRG00000008060)	ackr3a (ENSNBRG00000008055)	nhlh2 (ENSNBRG00000008044)	vangl1 (ENSNBRG00000008009) #22	casq2 (ENSNBRG00000007969) #23	KCNE2 (ENSNBRG00000007957)	SLC5A3 (ENSNBRG00000007950)	DOP1B (ENSNBRG00000007812)	ENSNBRG00000007753	ENSNBRG00000007734	chaf1b (ENSNBRG00000007708)	ENSNBRG00000007688	bcl9 (ENSNBRG00000007614)	acp6 (ENSNBRG00000007530)	gja5a (ENSNBRG00000007508)	gja8a (ENSNBRG00000007490)	ENSNBRG00000007484	ENSNBRG00000007459	ENSNBRG00000007422
Nile tilapia	MODERN SPECIES	7	ofd1 (ENSONIG00000016044)	gpm6bb (ENSONIG00000016037)	glra2 (ENSONIG00000016034)	ENSONIG00000032474	mospd2 (ENSONIG00000016029)	ENSONIG00000016027	GPR143 (ENSONIG00000016023)	tbl1x (ENSONIG00000016020)	ANOS1 (ENSONIG00000016014)	ENSONIG00000036502	ENSONIG00000016013	ENSONIG00000042158	igsf3 (ENSONIG00000016010)	rpe (ENSONIG00000016008)	nhlh2 (ENSONIG00000020673)	vangl1 (ENSONIG00000016004) #22	casq2 (ENSONIG00000027104) #23	KCNE2 (ENSONIG00000040885)	SLC5A3 (ENSONIG00000020671)	DOP1B (ENSONIG00000015987)	chaf1b (ENSONIG00000015981)	ENSONIG00000035799	bcl9 (ENSONIG00000015978)	acp6 (ENSONIG00000015974)	gja5a (ENSONIG00000020670)	gja8a (ENSONIG00000020669)	ENSONIG00000003472	ENSONIG00000015143	ENSONIG00000041854	ENSONIG00000035487	ENSONIG00000032917
Midas cichlid	MODERN SPECIES	992	gpm6bb (ENSACIG00000017921)	glra2 (ENSACIG00000017897)	ENSACIG00000017874	mospd2 (ENSACIG00000017859)	ENSACIG00000017836	GPR143 (ENSACIG00000017825)	tbl1x (ENSACIG00000017803)	ANOS1 (ENSACIG00000017781)	ENSACIG00000017774	ENSACIG00000017746	igsf3l (ENSACIG00000017724)	igsf3 (ENSACIG00000017701)	rpe (ENSACIG00000017691)	ackr3a (ENSACIG00000017679)	nhlh2 (ENSACIG00000017676)	vangl1 (ENSACIG00000017659) #22	casq2 (ENSACIG00000017635) #23	KCNE2 (ENSACIG00000017630)	SLC5A3 (ENSACIG00000017624)	DOP1B (ENSACIG00000017406)	ENSACIG00000017382	ENSACIG00000017373	chaf1b (ENSACIG00000017355)	ENSACIG00000017344	ENSACIG00000017321	bcl9 (ENSACIG00000017075)	acp6 (ENSACIG00000017042)	gja8a (ENSACIG00000017010)	ENSACIG00000016993	ENSACIG00000016976	ENSACIG00000016971
Atherinomorphae	ANCESTRAL SPECIES	13	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT01030000234540.A.b	ENSGT00940000163715.a	ENSGT00940000155177.a	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT01030000235215	ENSGT00940000155010.a	ENSGT00940000159150	ENSGT00940000156563.b	ENSGT00940000164480.b	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000161679.a	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00940000177402	ENSGT00550000074968	ENSGT00940000177223	ENSGT00940000173749	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01090000260658	ENSGT01050000244864.D	ENSGT00940000164822	ENSGT00940000157784.c.c
Cyprinodontiformes	ANCESTRAL SPECIES	15	ENSGT00940000158730	ENSGT00390000009885	ENSGT00390000016713	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT01030000234540.A.b	ENSGT00940000163715.a	ENSGT00940000155177.a	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000156563.b	ENSGT00940000164480.b	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000161679.a	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00940000177402	ENSGT00550000074968	ENSGT00940000177223	ENSGT00940000173749	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01090000260658	ENSGT01050000244864.D	ENSGT00940000164822	ENSGT00940000157784.c.c
Aplocheiloidei	ANCESTRAL SPECIES	6	ENSGT00390000016713	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT00980000198755	ENSGT00940000163715.a	ENSGT00940000155177.a	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000156563.b	ENSGT00940000155010.a	ENSGT00940000159150	ENSGT00940000164480.b	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000161679.a	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00550000074968	ENSGT00940000177223	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01090000260658	ENSGT01050000244864.D	ENSGT00940000175300	ENSGT00940000157784.c.c	ENSGT00940000156556.g	ENSGT01040000240385.A.b.b.a.b.a.a.b.b
Mangrove rivulus	MODERN SPECIES	66	mospd2 (ENSKMAG00000017887)	ENSKMAG00000017916	GPR143 (ENSKMAG00000017944)	tbl1x (ENSKMAG00000017972)	ANOS1 (ENSKMAG00000018037)	ENSKMAG00000018104	ENSKMAG00000018119	klhl6 (ENSKMAG00000018152)	igsf3l (ENSKMAG00000018184)	igsf3 (ENSKMAG00000018207)	rpe (ENSKMAG00000018226)	ackr3a (ENSKMAG00000018245)	NQO2 (ENSKMAG00000018255)	ENSKMAG00000018273	nqo1 (ENSKMAG00000018308)	vangl1 (ENSKMAG00000018331) #22	casq2 (ENSKMAG00000018355) #23	SLC5A3 (ENSKMAG00000018395)	DOP1B (ENSKMAG00000018414)	ENSKMAG00000018452	ENSKMAG00000018469	ENSKMAG00000018484	chaf1b (ENSKMAG00000018508)	ENSKMAG00000018553	bcl9 (ENSKMAG00000018575)	acp6 (ENSKMAG00000018604)	gja5a (ENSKMAG00000018619)	gja8a (ENSKMAG00000018630)	ENSKMAG00000018639	ENSKMAG00000018655	ENSKMAG00000018671
Turquoise killifish	MODERN SPECIES	1623	ENSNFUG00015008758	MOSPD2 (ENSNFUG00015008752)	ENSNFUG00015008748	GPR143 (ENSNFUG00015008745)	tbl1x (ENSNFUG00015008718)	KAL1 (ENSNFUG00015008575)	ENSNFUG00015008548	ENSNFUG00015008537	KLHL6 (ENSNFUG00015008532)	igsf3l (ENSNFUG00015008524)	ENSNFUG00015008521	igsf3 (ENSNFUG00015008515)	RPE (ENSNFUG00015008506)	NQO2 (ENSNFUG00015008486)	ENSNFUG00015008472	vangl1 (ENSNFUG00015008448) #22	casq2 (ENSNFUG00015007835) #23	ENSNFUG00015007759	SLC5A3 (ENSNFUG00015007757)	DOPEY2 (ENSNFUG00015007747)	MORC3B (ENSNFUG00015007730)	chaf1b (ENSNFUG00015007708)	ENSNFUG00015007697	BCL9 (ENSNFUG00015007689)	ACP6 (ENSNFUG00015007668)	CX45.6 (ENSNFUG00015007663)	ENSNFUG00015007661	gja8a (ENSNFUG00015007658)	ENSNFUG00015007639	fstl1b (ENSNFUG00015007573)	LRRC58B (ENSNFUG00015007547)
Cyprinodontoidei	ANCESTRAL SPECIES	13	ENSGT00940000158730	ENSGT00390000009885	ENSGT00390000016713	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT01030000234540.A.b	ENSGT00940000163715.a	ENSGT00940000155177.a	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000156563.b	ENSGT00940000164480.b	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000161679.a	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00940000177402	ENSGT00550000074968	ENSGT00940000177223	ENSGT00940000173749	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01090000260658	ENSGT01050000244864.D	ENSGT00940000164822	ENSGT00940000157784.c.c
NAME_4	ANCESTRAL SPECIES	25								ENSGT01030000234540.A.b	ENSGT00940000164826	ENSGT00940000155177.a	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000156563.b.i.a	ENSGT00940000164480.b	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000161679.a	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00940000177402	ENSGT00550000074968	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01050000244864.D	ENSGT00940000164822	ENSGT00940000157784.c.c	ENSGT00940000156556.g	ENSGT01040000240385.A.b.b.a.b.a.a.b.b	ENSGT00940000159755
Sheepshead minnow	MODERN SPECIES	1208													ackr3a (ENSCVAG00000000151)	ENSCVAG00000005391	ENSCVAG00000005410	vangl1 (ENSCVAG00000000158) #22	casq2 (ENSCVAG00000005447) #23	SLC5A3 (ENSCVAG00000005451)	ENSCVAG00000005480	DOP1B (ENSCVAG00000005644)
Mummichog	MODERN SPECIES	2440					ANOS1 (ENSFHEG00000018566)	ENSFHEG00000018498	ENSFHEG00000018486	ENSFHEG00000018463	ENSFHEG00000018406	igsf3 (ENSFHEG00000018390)	rpe (ENSFHEG00000018385)	ackr3a (ENSFHEG00000018359)	NQO2 (ENSFHEG00000018342)	ENSFHEG00000018317	ENSFHEG00000018297	vangl1 (ENSFHEG00000018283) #22	casq2 (ENSFHEG00000018252) #23	SLC5A3 (ENSFHEG00000018150)	DOP1B (ENSFHEG00000018127)	ENSFHEG00000017794	ENSFHEG00000017778	chaf1b (ENSFHEG00000017756)	ENSFHEG00000017713	bcl9 (ENSFHEG00000017704)	acp6 (ENSFHEG00000017697)	gja5a (ENSFHEG00000017671)	gja8a (ENSFHEG00000017667)	ENSFHEG00000017646
Poeciliinae	ANCESTRAL SPECIES		ENSGT00390000006915.c.c.b	ENSGT00940000158730	ENSGT00390000009885	ENSGT00390000016713	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT01030000234540.A.b	ENSGT00940000163715.a	ENSGT00940000155177.a	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000156563.b	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000161679.a	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00940000177402	ENSGT00550000074968	ENSGT00940000177223	ENSGT00940000173749	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01090000260658	ENSGT01050000244864.D	ENSGT00940000164822	ENSGT00940000157784.c.c
Poecilia	ANCESTRAL SPECIES	13	ENSGT00940000158730.j	ENSGT00390000009885	ENSGT00390000016713	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT01030000234540.A.b	ENSGT00940000163715.a	ENSGT00940000155177.a	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000156563.b.f	ENSGT00940000156563.b.e	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000161679.a	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00940000177402	ENSGT00550000074968	ENSGT00940000177223	ENSGT00940000173749	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01090000260658	ENSGT01050000244864.D	ENSGT00940000164822	ENSGT00940000157784.c.c
NAME_6	ANCESTRAL SPECIES	20	ENSGT00940000158730.j	ENSGT00940000158730.i	ENSGT00390000009885	ENSGT00390000016713	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT00940000163715.a	ENSGT00940000155177.a	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000156563.b.f	ENSGT00940000156563.b.e	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000161679.a	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00940000177402	ENSGT00550000074968	ENSGT00940000177223	ENSGT00940000173749	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01090000260658	ENSGT01050000244864.D
Amazon molly	MODERN SPECIES	268	glra2 (ENSPFOG00000003718)	mospd2 (ENSPFOG00000003570)	glra2 (ENSPFOG00000003430)	ENSPFOG00000003321	mospd2 (ENSPFOG00000003096)	ENSPFOG00000003031	GPR143 (ENSPFOG00000002963)	tbl1x (ENSPFOG00000002848)	ANOS1 (ENSPFOG00000002437)	klhl6 (ENSPFOG00000002369)	ENSPFOG00000002302	igsf3 (ENSPFOG00000002036)	rpe (ENSPFOG00000001914)	ackr3a (ENSPFOG00000020140)	NQO2 (ENSPFOG00000001802)	vangl1 (ENSPFOG00000001704) #22	casq2 (ENSPFOG00000001603) #23	SLC5A3 (ENSPFOG00000020138)	DOP1B (ENSPFOG00000001181)	chaf1b (ENSPFOG00000000916)	ENSPFOG00000000866	bcl9 (ENSPFOG00000000816)	acp6 (ENSPFOG00000000741)	gja5a (ENSPFOG00000000712)	gja8a (ENSPFOG00000020135)
Sailfin molly	MODERN SPECIES	230									klhl6 (ENSPLAG00000007830)	ENSPLAG00000007902	igsf3 (ENSPLAG00000007957)	rpe (ENSPLAG00000007977)	ackr3a (ENSPLAG00000000170)	ENSPLAG00000007997	ENSPLAG00000008011	vangl1 (ENSPLAG00000008041) #22	casq2 (ENSPLAG00000008074) #23	SLC5A3 (ENSPLAG00000008080)	ENSPLAG00000008093	DOP1B (ENSPLAG00000008156)	ENSPLAG00000008163	ENSPLAG00000008174	chaf1b (ENSPLAG00000008208)	ENSPLAG00000008228	ENSPLAG00000008243
Guppy	MODERN SPECIES	450	FANCB (ENSPREG00000001642)	mospd2 (ENSPREG00000001547)	ENSPREG00000001482	GPR143 (ENSPREG00000001452)	tbl1x (ENSPREG00000001406)	ANOS1 (ENSPREG00000001327)	ENSPREG00000001291	ENSPREG00000001251	klhl6 (ENSPREG00000001224)	igsf3 (ENSPREG00000001212)	rpe (ENSPREG00000001185)	ackr3a (ENSPREG00000001170)	ENSPREG00000001163	ENSPREG00000001100	ENSPREG00000001082	vangl1 (ENSPREG00000001072) #22	casq2 (ENSPREG00000001027) #23	SLC5A3 (ENSPREG00000001022)	DOP1B (ENSPREG00000001003)	ENSPREG00000000975	ENSPREG00000000961	chaf1b (ENSPREG00000000956)	ENSPREG00000000946	bcl9 (ENSPREG00000000937)	acp6 (ENSPREG00000000930)	gja5a (ENSPREG00000000914)	gja8a (ENSPREG00000000906)	ENSPREG00000000895	fstl1b (ENSPREG00000000857)	LRRC58 (ENSPREG00000000835)	GPR156 (ENSPREG00000000813)
Platyfish	MODERN SPECIES	21	glra2 (ENSXMAG00000004370)	FANCB (ENSXMAG00000004369)	mospd2 (ENSXMAG00000004358)	ENSXMAG00000004342	GPR143 (ENSXMAG00000004334)	tbl1x (ENSXMAG00000004308)	ANOS1 (ENSXMAG00000004292)	ENSXMAG00000004290	klhl6 (ENSXMAG00000024721)	ENSXMAG00000004264	igsf3 (ENSXMAG00000004255)	rpe (ENSXMAG00000004245)	ackr3a (ENSXMAG00000019569)	ENSXMAG00000022658	ENSXMAG00000004231	vangl1 (ENSXMAG00000004211) #22	casq2 (ENSXMAG00000004185) #23	SLC5A3 (ENSXMAG00000019568)	DOP1B (ENSXMAG00000004151)	ENSXMAG00000024686	morc3a (ENSXMAG00000004110)	chaf1b (ENSXMAG00000004101)	ENSXMAG00000027739	ENSXMAG00000027689	bcl9 (ENSXMAG00000004093)	acp6 (ENSXMAG00000023912)	gja5a (ENSXMAG00000004079)	ENSXMAG00000022712	gja8a (ENSXMAG00000004073)	ENSXMAG00000024723	ENSXMAG00000027373
Oryzias	ANCESTRAL SPECIES	10	ENSGT00940000158730	ENSGT00390000009885	ENSGT00390000016713	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT01030000234540.A.b	ENSGT00940000163715.a	ENSGT00940000155177.a	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000159150	ENSGT00940000156563.b.m	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000161679.a	ENSGT00390000016421.b.a.q	ENSGT00940000166160	ENSGT00550000074968	ENSGT00940000177223	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01050000244864.D	ENSGT00940000164822.j	ENSGT00940000175300	ENSGT00940000164822.i.a	ENSGT00940000157784.c.c	ENSGT00940000156556.g
Oryzias_a	ANCESTRAL SPECIES	21	ENSGT00940000158730	ENSGT00390000009885	ENSGT00390000016713	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT01030000234540.A.b	ENSGT00940000163715.a	ENSGT00940000155177.a	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000159150	ENSGT00940000156563.b.m	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000161679.a	ENSGT00390000016421.b.a.q	ENSGT00940000166160	ENSGT00550000074968	ENSGT00940000177223	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01030000235357.b.b.b	ENSGT01050000244864.D	ENSGT00940000164822.j	ENSGT00940000164822.i.a.a.a.a.a.a	ENSGT00940000157784.c.c	ENSGT00940000156556.g
Chinese medaka	MODERN SPECIES	394	ENSOSIG00000013606	ofd1 (ENSOSIG00000013614)	gpm6bb (ENSOSIG00000013620)	glra2 (ENSOSIG00000013627)	ENSOSIG00000013629	mospd2 (ENSOSIG00000013664)	ENSOSIG00000014318	GPR143 (ENSOSIG00000014321)	tbl1x (ENSOSIG00000014322)	ANOS1 (ENSOSIG00000014335)	klhl6 (ENSOSIG00000014347)	ENSOSIG00000014350	igsf3 (ENSOSIG00000014352)	rpe (ENSOSIG00000014353)	ackr3a (ENSOSIG00000014354)	vangl1 (ENSOSIG00000014355) #22	casq2 (ENSOSIG00000014364) #23	SLC5A3 (ENSOSIG00000014857)	DOP1B (ENSOSIG00000014858)	ENSOSIG00000014859	chaf1b (ENSOSIG00000014860)	ENSOSIG00000014868	bcl9 (ENSOSIG00000014872)	acp6 (ENSOSIG00000014876)	gja5a (ENSOSIG00000014879)	ENSOSIG00000014881	gja8a (ENSOSIG00000014884)
Japanese Medaka HdrR	MODERN SPECIES	13	FANCB (ENSORLG00000017835)	mospd2 (ENSORLG00000017842)	ENSORLG00000017849	GPR143 (ENSORLG00000017851)	tbl1x (ENSORLG00000017855)	anos1 (ENSORLG00000017858)	ENSORLG00000017860	klhl6 (ENSORLG00000017867)	igsf3l (ENSORLG00000025661)	igsf3 (ENSORLG00000017870)	rpe (ENSORLG00000017873)	ackr3a (ENSORLG00000017874)	nqo1 (ENSORLG00000017876)	ENSORLG00000030361	ENSORLG00000007464	vangl1 (ENSORLG00000017880) #22	casq2 (ENSORLG00000017885) #23	SLC5A3 (ENSORLG00000017889)	DOP1B (ENSORLG00000017902)	ENSORLG00000024053	ENSORLG00000017910	ENSORLG00000017912	ENSORLG00000017907	chaf1b (ENSORLG00000017915)	ENSORLG00000028455	bcl9 (ENSORLG00000017920)	acp6 (ENSORLG00000017924)	gja5a (ENSORLG00000017925)	ENSORLG00000022370	gja8a (ENSORLG00000017928)	ENSORLG00000027779
Oryzias_b	ANCESTRAL SPECIES	10	ENSGT00390000006915.c.c.b	ENSGT00940000158730	ENSGT00390000009885	ENSGT00390000016713	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT01030000234540.A.b	ENSGT00940000163715.a	ENSGT00940000155177.a	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000156563.b.m	ENSGT00390000012496.a.d #22	ENSGT00940000166160.j	ENSGT00390000019377.b.f #23	ENSGT00940000161679.a	ENSGT00390000016421.b.a.r	ENSGT00940000166160.i	ENSGT00550000074968	ENSGT00940000177223	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01050000244864.D	ENSGT00940000175300	ENSGT00940000164822.i.a	ENSGT00940000157784.c.c	ENSGT00940000156556.g
Indian medaka	MODERN SPECIES	18	glra2 (ENSOMEG00000006998)	ENSOMEG00000007056	mospd2 (ENSOMEG00000007120)	ENSOMEG00000007151	GPR143 (ENSOMEG00000007184)	tbl1x (ENSOMEG00000007223)	ANOS1 (ENSOMEG00000007271)	ENSOMEG00000007452	klhl6 (ENSOMEG00000007526)	ENSOMEG00000007569	igsf3 (ENSOMEG00000007603)	rpe (ENSOMEG00000000188)	ackr3a (ENSOMEG00000007664)	ENSOMEG00000007678	ENSOMEG00000007696	vangl1 (ENSOMEG00000000817) #22	ENSOMEG00000007752	ENSOMEG00000007764	ENSOMEG00000007772	ENSOMEG00000007783	casq2 (ENSOMEG00000007803) #23	SLC5A3 (ENSOMEG00000007813)	ENSOMEG00000007829	DOP1B (ENSOMEG00000007865)	casq2 (ENSOMEG00000007893) #23	ENSOMEG00000007987	chaf1b (ENSOMEG00000008033)	ENSOMEG00000008042	bcl9 (ENSOMEG00000008102)	acp6 (ENSOMEG00000001035)	gja5a (ENSOMEG00000008145)
Javanese ricefish	MODERN SPECIES	13	gpm6bb (ENSOJAG00000011724)	glra2 (ENSOJAG00000011665)	ENSOJAG00000011650	mospd2 (ENSOJAG00000010431)	ENSOJAG00000010319	GPR143 (ENSOJAG00000010280)	tbl1x (ENSOJAG00000010027)	ANOS1 (ENSOJAG00000009704)	ENSOJAG00000009664	klhl6 (ENSOJAG00000009631)	ENSOJAG00000009562	igsf3 (ENSOJAG00000009511)	rpe (ENSOJAG00000009482)	ackr3a (ENSOJAG00000009475)	ENSOJAG00000009424	vangl1 (ENSOJAG00000009411) #22	ENSOJAG00000009344	casq2 (ENSOJAG00000009033) #23	SLC5A3 (ENSOJAG00000009006)	ENSOJAG00000008881	ENSOJAG00000008856	chaf1b (ENSOJAG00000008818)	ENSOJAG00000008794	bcl9 (ENSOJAG00000008778)	acp6 (ENSOJAG00000008554)	gja5a (ENSOJAG00000008538)	gja8a (ENSOJAG00000008516)	ENSOJAG00000008475	ENSOJAG00000008398	fstl1b (ENSOJAG00000008376)	LRRC58 (ENSOJAG00000008369)
Tiger tail seahorse	MODERN SPECIES	456	gpm6bb (ENSHCOG00000004149)	glra2 (ENSHCOG00000004168)	ENSHCOG00000004192	mospd2 (ENSHCOG00000004209)	ENSHCOG00000004215	GPR143 (ENSHCOG00000004237)	tbl1x (ENSHCOG00000004264)	ANOS1 (ENSHCOG00000004314)	ENSHCOG00000004329	ENSHCOG00000004343	ENSHCOG00000004371	igsf3 (ENSHCOG00000004403)	rpe (ENSHCOG00000004438)	ackr3a (ENSHCOG00000004447)	nxpe3 (ENSHCOG00000004522)	vangl1 (ENSHCOG00000004550) #22	casq2 (ENSHCOG00000004580) #23	SLC5A3 (ENSHCOG00000004590)	ENSHCOG00000004602	DOP1B (ENSHCOG00000004648)	ENSHCOG00000004657	chaf1b (ENSHCOG00000004695)	ENSHCOG00000004702	bcl9 (ENSHCOG00000004712)	acp6 (ENSHCOG00000004720)	gja5a (ENSHCOG00000004729)	gja8a (ENSHCOG00000004740)	ENSHCOG00000004744	fstl1b (ENSHCOG00000000141)	LRRC58 (ENSHCOG00000005255)	ENSHCOG00000005283
Pinecone sodierfish	MODERN SPECIES	13	glra2 (ENSMMDG00005024070)	FANCB (ENSMMDG00005024076)	mospd2 (ENSMMDG00005024100)	ENSMMDG00005024181	GPR143 (ENSMMDG00005024183)	tbl1x (ENSMMDG00005024185)	ANOS1 (ENSMMDG00005024190)	ENSMMDG00005024195	klhl6 (ENSMMDG00005024197)	igsf3l (ENSMMDG00005024198)	igsf3 (ENSMMDG00005024200)	rpe (ENSMMDG00005024201)	ackr3a (ENSMMDG00005024202)	ENSMMDG00005024203	nhlh2 (ENSMMDG00005024204)	vangl1 (ENSMMDG00005024205) #22	casq2 (ENSMMDG00005024206) #23	KCNE2 (ENSMMDG00005024209)	SLC5A3 (ENSMMDG00005002525)	atp5po (ENSMMDG00005002533)	DOP1B (ENSMMDG00005002545)	ENSMMDG00005002564	ENSMMDG00005002600	chaf1b (ENSMMDG00005002685)	ENSMMDG00005002727	bcl9 (ENSMMDG00005002739)	acp6 (ENSMMDG00005002762)	gja5a (ENSMMDG00005002802)	gja8a (ENSMMDG00005002811)	ENSMMDG00005002822	ENSMMDG00005002832
Cod	MODERN SPECIES	12	glra2 (ENSGMOG00000011465)	ENSGMOG00000032684	mospd2 (ENSGMOG00000011428)	ENSGMOG00000011422	ENSGMOG00000011413	tbl1x (ENSGMOG00000011402)	ENSGMOG00000023302	ENSGMOG00000037130	ENSGMOG00000011382	ENSGMOG00000011368	ENSGMOG00000003851	ENSGMOG00000028480	ENSGMOG00000036777	ENSGMOG00000029492	ENSGMOG00000031399	vangl1 (ENSGMOG00000007036) #22	ENSGMOG00000028003	casq2 (ENSGMOG00000011071) #23	ENSGMOG00000020229	ENSGMOG00000011067	ENSGMOG00000010998	ENSGMOG00000032270	ENSGMOG00000035579	ENSGMOG00000004002	ENSGMOG00000007814	ENSGMOG00000025425	prkra (ENSGMOG00000023426)	ENSGMOG00000004037	ENSGMOG00000025591	ENSGMOG00000004113	agps (ENSGMOG00000004161)
Protacanthopterygii	ANCESTRAL SPECIES	109	ENSGT00390000016713	ENSGT00940000165059.A	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a.a.a	ENSGT01030000234540.A.b	ENSGT00990000204171	ENSGT01030000235037	ENSGT00940000163715.a	ENSGT00940000155177.a	ENSGT00940000155177.b	ENSGT00390000001447.ec	ENSGT01090000260051.b.b.dc.b	ENSGT00940000156563.b	ENSGT00940000164480.a.a	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000154497.B	ENSGT00510000046499.r.b	ENSGT00390000016421.b.a	ENSGT00940000166160.ab	ENSGT00550000074968	ENSGT00900000141090.t	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT01050000244864.D	ENSGT00940000157784.c.d	ENSGT00940000156556.h	ENSGT00520000055635.c.a.a.a	ENSGT00940000164822.db
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	146	ENSGT00390000009885	ENSGT00390000016713.g.a	ENSGT00940000165059.A.i.a.a	ENSGT00390000016722.f	ENSGT00940000153421.a.a.a.a.b.m	ENSGT00440000033720.a.a.a.b	ENSGT01030000235037.d	ENSGT00940000163715.a	ENSGT00940000155177.a.l	ENSGT00940000155177.b.e	ENSGT00390000001447.ec.a.a	ENSGT01090000260051.b.b.dc.b.h	ENSGT00940000156563.b.ab	ENSGT00940000159150.`b.a	ENSGT00940000164480.a.a.h.b	ENSGT00390000012496.a.d.a #22	ENSGT00390000019377.b.f.g #23	ENSGT00940000154497.B	ENSGT00940000161679.a.f	ENSGT00390000015060.kb.a.a	ENSGT00510000046499.r.b	ENSGT00390000016421.b.a.f	ENSGT00940000166160.`b	ENSGT00940000166160.ab.b	ENSGT00550000074968.j	ENSGT00900000141090.t.sb.a	ENSGT00730000110915.b.d.a	ENSGT00940000158408.l	ENSGT01050000244864.C.e.e	ENSGT01050000244864.D.s.a	ENSGT00940000164822.db.b
Huchen	MODERN SPECIES	592													NQO1 (ENSHHUG00000033302)	nhlh2 (ENSHHUG00000033297)	ENSHHUG00000033294	vangl1 (ENSHHUG00000033288) #22	casq2 (ENSHHUG00000033272) #23	KCNE2 (ENSHHUG00000033269)	SLC5A3 (ENSHHUG00000033262)	atp5po (ENSHHUG00000033191)	CBR1 (ENSHHUG00000033071)	DOP1B (ENSHHUG00000033053)	ENSHHUG00000033036	ENSHHUG00000033039	ENSHHUG00000033030	chaf1b (ENSHHUG00000033017)	ENSHHUG00000033005	BCL9 (ENSHHUG00000033001)	acp6 (ENSHHUG00000032987)	gja5a (ENSHHUG00000032979)	gja8a (ENSHHUG00000032974)
Salmoninae_a	ANCESTRAL SPECIES		ENSGT00940000158730.l	ENSGT00390000009885	ENSGT00390000016713.g.a	ENSGT00940000165059.A.i.a.a	ENSGT00390000016722.f	ENSGT00940000153421.a.a.a.a.b.m	ENSGT00440000033720.a.a.a.b	ENSGT01030000235037.d	ENSGT00940000163715.a	ENSGT00940000155177.a.l	ENSGT00940000155177.b.e	ENSGT00390000001447.ec.a.a	ENSGT01090000260051.b.b.dc.b.h	ENSGT00940000156563.b.ab	ENSGT00940000164480.a.a.h.b	ENSGT00390000012496.a.d.a #22	ENSGT00390000019377.b.f.g #23	ENSGT00940000154497.B	ENSGT00940000161679.a.f	ENSGT00390000015060.kb.a.a	ENSGT00510000046499.r.b	ENSGT00390000016421.b.a.f	ENSGT00940000166160.ab.b	ENSGT00550000074968.j	ENSGT00940000177223.a	ENSGT00900000141090.t.sb.a	ENSGT00730000110915.b.d.a	ENSGT00940000158408.l	ENSGT01050000244864.C.e.e	ENSGT01050000244864.D.s.a	ENSGT00940000164822.db.b
Salmo	ANCESTRAL SPECIES	10	ENSGT00940000158730.l	ENSGT00390000009885	ENSGT00390000016713.g.a	ENSGT00940000165059.A.i.a.a	ENSGT00390000016722.f	ENSGT00940000153421.a.a.a.a.b.m	ENSGT00440000033720.a.a.a.b	ENSGT01030000235037.d	ENSGT00940000163715.a	ENSGT00940000155177.a.l	ENSGT00940000155177.b.e	ENSGT00390000001447.ec.a.a	ENSGT01090000260051.b.b.dc.b.h	ENSGT00940000159150.`b.a	ENSGT00940000164480.a.a.h.b	ENSGT00390000012496.a.d.a #22	ENSGT00390000019377.b.f.g #23	ENSGT00940000154497.B	ENSGT00940000161679.a.f	ENSGT00390000015060.kb.a.a	ENSGT00990000214232	ENSGT00390000016421.b.a.f	ENSGT00940000166160.ab.b	ENSGT00550000074968.j	ENSGT00900000141090.t.sb.a	ENSGT00730000110915.b.d.a	ENSGT00940000158408.l	ENSGT01050000244864.C.e.e	ENSGT01050000244864.D.s.a	ENSGT00940000164822.db.b	ENSGT00940000157784.c.c.c
River trout	MODERN SPECIES	12	glra2 (ENSSTUG00000007015)	ENSSTUG00000007030	mospd2 (ENSSTUG00000007058)	ENSSTUG00000007673	GPR143 (ENSSTUG00000007687)	tbl1x (ENSSTUG00000007698)	ANOS1 (ENSSTUG00000007800)	ENSSTUG00000007876	klhl6 (ENSSTUG00000007918)	ENSSTUG00000007927	igsf3 (ENSSTUG00000007941)	ENSSTUG00000007960	ackr3a (ENSSTUG00000007974)	NQO1 (ENSSTUG00000007984)	nhlh2 (ENSSTUG00000008174)	vangl1 (ENSSTUG00000008184) #22	casq2 (ENSSTUG00000008199) #23	KCNE2 (ENSSTUG00000008281)	SLC5A3 (ENSSTUG00000008284)	atp5po (ENSSTUG00000008290)	ENSSTUG00000008355	DOP1B (ENSSTUG00000008450)	ENSSTUG00000008794	chaf1b (ENSSTUG00000008809)	ENSSTUG00000008839	BCL9 (ENSSTUG00000008851)	acp6 (ENSSTUG00000008881)	gja5a (ENSSTUG00000008924)	gja8a (ENSSTUG00000008930)	ENSSTUG00000008939	ENSSTUG00000008971
Atlantic salmon	MODERN SPECIES	13	glra2 (ENSSSAG00000048892)	ENSSSAG00000048852	mospd2 (ENSSSAG00000048416)	ENSSSAG00000048376	GPR143 (ENSSSAG00000048302)	tbl1x (ENSSSAG00000048037)	ANOS1 (ENSSSAG00000047935)	ENSSSAG00000047907	klhl6 (ENSSSAG00000047892)	ENSSSAG00000047817	ENSSSAG00000044924	rpe (ENSSSAG00000044897)	ackr3a (ENSSSAG00000088471)	ENSSSAG00000054834	nhlh2 (ENSSSAG00000044432)	vangl1 (ENSSSAG00000044373) #22	casq2 (ENSSSAG00000103020) #23	KCNE2 (ENSSSAG00000088761)	SLC5A3 (ENSSSAG00000098423)	atp5po (ENSSSAG00000043976)	ENSSSAG00000043759	DOP1B (ENSSSAG00000042986)	morc3a (ENSSSAG00000092286)	chaf1b (ENSSSAG00000042565)	ENSSSAG00000042541	BCL9 (ENSSSAG00000042529)	ppa6 (ENSSSAG00000042468)	gja5a (ENSSSAG00000042461)	gja8a (ENSSSAG00000042447)	ENSSSAG00000093353	ENSSSAG00000086573
Oncorhynchus	ANCESTRAL SPECIES	13	ENSGT00940000158730.l	ENSGT00390000009885	ENSGT00390000016713.g.a	ENSGT00940000165059.A.i.a.a	ENSGT00390000016722.f	ENSGT00940000153421.a.a.a.a.b.m	ENSGT00440000033720.a.a.a.b	ENSGT01030000235037.d	ENSGT00940000163715.a	ENSGT00940000155177.a.l	ENSGT00940000155177.b.e	ENSGT00390000001447.ec.a.a	ENSGT01090000260051.b.b.dc.b.h	ENSGT00940000156563.b.ab	ENSGT00940000164480.a.a.h.b	ENSGT00390000012496.a.d.a #22	ENSGT00390000019377.b.f.g #23	ENSGT00940000154497.B.i	ENSGT00940000161679.a.f	ENSGT00390000015060.kb.a.a	ENSGT00510000046499.r.b	ENSGT00390000016421.b.a.f	ENSGT00940000166160.ab.b	ENSGT00550000074968.j	ENSGT00940000177223.a	ENSGT00730000110915.b.d.a	ENSGT00940000158408.l	ENSGT01050000244864.C.e.e	ENSGT01050000244864.D.s.a	ENSGT00940000164822.db.b	ENSGT00940000157784.c.c.c
Rainbow trout	MODERN SPECIES	14	glra2 (ENSOMYG00000019847)	ENSOMYG00000019842	mospd2 (ENSOMYG00000019450)	ENSOMYG00000019349	GPR143 (ENSOMYG00000019343)	tbl1x (ENSOMYG00000019289)	ANOS1 (ENSOMYG00000019180)	ENSOMYG00000019134	ENSOMYG00000019091	ENSOMYG00000076143	ENSOMYG00000019048	rpe (ENSOMYG00000019037)	ackr3a (ENSOMYG00000019032)	ENSOMYG00000018898	nhlh2 (ENSOMYG00000018870)	vangl1 (ENSOMYG00000018862) #22	ENSOMYG00000036126	casq2 (ENSOMYG00000018660) #23	KCNE2 (ENSOMYG00000018596)	SLC5A3 (ENSOMYG00000018592)	atp5po (ENSOMYG00000018540)	ENSOMYG00000066976	ENSOMYG00000059586	chaf1b (ENSOMYG00000018441)	ENSOMYG00000018426	BCL9 (ENSOMYG00000018417)	acp6 (ENSOMYG00000018343)	gja5a (ENSOMYG00000018337)	gja8a (ENSOMYG00000018326)	ENSOMYG00000018307	fstl1b (ENSOMYG00000017433)
Oncorhynchus_a	ANCESTRAL SPECIES	11	ENSGT00940000158730.l	ENSGT00390000009885	ENSGT00390000016713.g.a	ENSGT00940000165059.A.i.a.a	ENSGT00390000016722.f	ENSGT00940000153421.a.a.a.a.b.m	ENSGT00440000033720.a.a.a.b	ENSGT01030000235037.d	ENSGT00940000163715.a	ENSGT00940000155177.a.l	ENSGT00940000155177.b.e	ENSGT00390000001447.ec.a.a	ENSGT01090000260051.b.b.dc.b.h	ENSGT00940000156563.b.ab	ENSGT00940000164480.a.a.h.b	ENSGT00390000012496.a.d.a #22	ENSGT00390000019377.b.f.g #23	ENSGT00940000154497.B.i	ENSGT00940000161679.a.f	ENSGT00390000015060.kb.a.a	ENSGT00510000046499.r.b	ENSGT00390000016421.b.a.f	ENSGT00940000166160.ab.b	ENSGT00550000074968.j	ENSGT00940000177223.a	ENSGT00730000110915.b.d.a	ENSGT00940000158408.l	ENSGT01050000244864.C.e.e	ENSGT01050000244864.D.s.a	ENSGT00940000164822.db.b	ENSGT00940000157784.c.c.c
Chinook salmon	MODERN SPECIES	18	ENSOTSG00005005608	glra2 (ENSOTSG00005005607)	ENSOTSG00005005606	mospd2 (ENSOTSG00005005600)	ENSOTSG00005005595	GPR143 (ENSOTSG00005005592)	tbl1x (ENSOTSG00005004863)	ANOS1 (ENSOTSG00005004801)	ENSOTSG00005004797	klhl6 (ENSOTSG00005004782)	igsf3 (ENSOTSG00005004780)	rpe (ENSOTSG00005004777)	ackr3a (ENSOTSG00005004775)	ENSOTSG00005004774	nhlh2 (ENSOTSG00005004773)	vangl1 (ENSOTSG00005004770) #22	casq2 (ENSOTSG00005003019) #23	KCNE2 (ENSOTSG00005003008)	SLC5A3 (ENSOTSG00005003006)	atp5po (ENSOTSG00005003000)	DOP1B (ENSOTSG00005013614)	ENSOTSG00005013613	chaf1b (ENSOTSG00005013607)	ENSOTSG00005013605	BCL9 (ENSOTSG00005013604)	acp6 (ENSOTSG00005013603)	gja5a (ENSOTSG00005013602)	gja8a (ENSOTSG00005013601)	ENSOTSG00005013600	fstl1b (ENSOTSG00005013465)	LRRC58 (ENSOTSG00005013461)
Coho salmon	MODERN SPECIES	18	glra2 (ENSOKIG00005015537)	ENSOKIG00005015526	mospd2 (ENSOKIG00005014378)	ENSOKIG00005014334	GPR143 (ENSOKIG00005014324)	tbl1x (ENSOKIG00005014218)	ANOS1 (ENSOKIG00005014133)	ENSOKIG00005014107	klhl6 (ENSOKIG00005014065)	ENSOKIG00005014027	igsf3 (ENSOKIG00005014013)	rpe (ENSOKIG00005013983)	ackr3a (ENSOKIG00005013979)	ENSOKIG00005013949	nhlh2 (ENSOKIG00005013944)	vangl1 (ENSOKIG00005013938) #22	casq2 (ENSOKIG00005013820) #23	KCNE2 (ENSOKIG00005013805)	SLC5A3 (ENSOKIG00005013802)	CBR1 (ENSOKIG00005013774)	DOP1B (ENSOKIG00005013707)	atp5po (ENSOKIG00005013670)	chaf1b (ENSOKIG00005013623)	ENSOKIG00005013605	BCL9 (ENSOKIG00005013563)	acp6 (ENSOKIG00005013517)	gja5a (ENSOKIG00005013507)	gja8a (ENSOKIG00005013498)	ENSOKIG00005013493	ENSOKIG00005013483	FSTL1 (ENSOKIG00005013133)
Salmoninae	ANCESTRAL SPECIES	370																ENSGT00390000012496.a.d.b #22	ENSGT00390000019377.b.f.h #23	ENSGT00980000202612	ENSGT00940000161679.a.e	ENSGT00390000015060.kb.a.b	ENSGT00940000168097.a	ENSGT00390000016421.b.a.e	ENSGT00940000166160.ab.a	ENSGT00550000074968.i	ENSGT00940000157543.gb	ENSGT00900000141090.t.sb.b	ENSGT00730000110915.b.d.b	ENSGT00940000158408.k	ENSGT01050000244864.C.e.f	ENSGT01050000244864.D.s.b	ENSGT00940000175300
Salmoninae_a	ANCESTRAL SPECIES		ENSGT00390000016713.g.b	ENSGT00940000165059.A.i.a.b	ENSGT00390000016722.e	ENSGT00940000153421.a.a.a.a.b.n	ENSGT00440000033720.a.a.a.a	ENSGT01030000234540.A.b	ENSGT00990000204171	ENSGT01030000235037.c	ENSGT00940000155177.a.k	ENSGT00940000155177.b.f.a.a	ENSGT00390000001447.ec.a.b	ENSGT01090000260051.b.b.dc.b.g	ENSGT00940000156563.b.`b.a	ENSGT01030000234567.B.a.a.b.a.a.d	ENSGT00940000164480.a.a.h.a	ENSGT00390000012496.a.d.b #22	ENSGT00390000019377.b.f.h #23	ENSGT00980000202612	ENSGT00940000161679.a.e	ENSGT00390000015060.kb.a.b	ENSGT00940000168097.a	ENSGT00390000016421.b.a.e	ENSGT00940000166160.ab.a	ENSGT00550000074968.i	ENSGT00900000141090.t.sb.b	ENSGT00730000110915.b.d.b	ENSGT00940000158408.k.a	ENSGT01050000244864.C.e.f	ENSGT01050000244864.D.s.b	ENSGT00940000164822.db.a.d	ENSGT00940000175300
Salmo	ANCESTRAL SPECIES	15	ENSGT00390000016713.g.b	ENSGT00940000165059.A.i.a.b	ENSGT00390000016722.e	ENSGT00940000153421.a.a.a.a.b.n	ENSGT00440000033720.a.a.a.a	ENSGT00990000204171	ENSGT01030000235037.c	ENSGT00940000155177.a.k	ENSGT00940000155177.b.f.b	ENSGT00390000001447.ec.b	ENSGT00390000001447.ec.a.b	ENSGT01090000260051.b.b.dc.b.g	ENSGT00940000156563.b.`b.a	ENSGT01030000234567.B.a.a.b.a.a.d	ENSGT00940000164480.a.a.h.a	ENSGT00390000012496.a.d.b #22	ENSGT00390000019377.b.f.h #23	ENSGT00980000202612	ENSGT00940000161679.a.e	ENSGT00390000015060.kb.a.b	ENSGT00940000168097.a	ENSGT00390000016421.b.a.e	ENSGT00940000166160.ab.a	ENSGT00550000074968.i	ENSGT00940000157543.gb	ENSGT00900000141090.t.sb.b	ENSGT00730000110915.b.d.b	ENSGT00940000158408.k.a	ENSGT01050000244864.C.e.f	ENSGT01050000244864.D.s.b	ENSGT00940000164822.db.a.c
Atlantic salmon	MODERN SPECIES	17	ENSSSAG00000082658	glra2 (ENSSSAG00000067987)	mospd2 (ENSSSAG00000068014)	GPR143 (ENSSSAG00000053806)	tbl1x (ENSSSAG00000053978)	ANOS1 (ENSSSAG00000054698)	ENSSSAG00000054780	ENSSSAG00000054799	ENSSSAG00000054804	ENSSSAG00000054813	rpe (ENSSSAG00000054825)	ENSSSAG00000054829	ENSSSAG00000044445	ENSSSAG00000054838	nhlh2 (ENSSSAG00000109106)	vangl1 (ENSSSAG00000054869) #22	casq2 (ENSSSAG00000054929) #23	ENSSSAG00000059503	ENSSSAG00000094002	ATPO (ENSSSAG00000059523)	ENSSSAG00000059598	ENSSSAG00000059772	ENSSSAG00000063057	ENSSSAG00000063093	BCL9 (ENSSSAG00000063108)	acp6 (ENSSSAG00000063120)	gja5a (ENSSSAG00000119255)	gja8a (ENSSSAG00000063143)	ENSSSAG00000063201	ENSSSAG00000104164	ENSSSAG00000063155
River trout	MODERN SPECIES	16	GPR143 (ENSSTUG00000006702)	tbl1x (ENSSTUG00000006744)	ANOS1 (ENSSTUG00000006773)	ENSSTUG00000006847	ENSSTUG00000006877	ENSSTUG00000006882	ENSSTUG00000006923	igsf3 (ENSSTUG00000006933)	rpe (ENSSTUG00000006974)	ackr3a (ENSSTUG00000006992)	ENSSTUG00000006999	ENSSTUG00000007146	ENSSTUG00000007158	zp3e (ENSSTUG00000007221)	nhlh2 (ENSSTUG00000007225)	vangl1 (ENSSTUG00000007230) #22	casq2 (ENSSTUG00000007253) #23	ENSSTUG00000007549	SLC5A3 (ENSSTUG00000007555)	atp5po (ENSSTUG00000007560)	ENSSTUG00000007585	DOP1B (ENSSTUG00000007601)	morc3a (ENSSTUG00000007695)	chaf1b (ENSSTUG00000007711)	ENSSTUG00000007736	BCL9 (ENSSTUG00000007749)	acp6 (ENSSTUG00000007757)	gja5a (ENSSTUG00000007814)	gja8a (ENSSTUG00000007818)	ENSSTUG00000007843	ENSSTUG00000007885
Oncorhynchus	ANCESTRAL SPECIES	3	ENSGT00940000155107.b.b	ENSGT00940000158730.k	ENSGT00390000016713.g.b.a	ENSGT00940000165059.A.i.a.b	ENSGT00390000016722.e	ENSGT00940000153421.a.a.a.a.b.n	ENSGT00440000033720.a.a.a.a	ENSGT01030000234540.A.b	ENSGT01030000235037.c	ENSGT00940000155177.a.k	ENSGT00940000155177.b.f.a.a	ENSGT00390000001447.ec.a.b	ENSGT01090000260051.b.b.dc.b.g	ENSGT01030000234567.B.a.a.b.a.a.d	ENSGT00940000164480.a.a.h.a	ENSGT00390000012496.a.d.b #22	ENSGT00390000019377.b.f.h #23	ENSGT00940000161679.a.e	ENSGT00390000015060.kb.a.b	ENSGT00940000168097.a.a	ENSGT00390000016421.b.a.e	ENSGT00940000166160.ab.a	ENSGT00550000074968.i	ENSGT00900000141090.t.sb.b	ENSGT00730000110915.b.d.b	ENSGT00940000158408.k.a	ENSGT01050000244864.C.e.f	ENSGT01050000244864.D.s.b	ENSGT00940000164822.db.a.d	ENSGT00940000164822.db.a.c	ENSGT00940000157784.c.c.d
Oncorhynchus_a	ANCESTRAL SPECIES	8	ENSGT00940000155107.b.b	ENSGT00940000158730.k	ENSGT00390000016713.g.b.a	ENSGT00940000165059.A.i.a.b	ENSGT00390000016722.e	ENSGT00940000153421.a.a.a.a.b.n	ENSGT00440000033720.a.a.a.a	ENSGT01030000234540.A.b	ENSGT01030000235037.c	ENSGT00940000155177.a.k	ENSGT00940000155177.b.f.a.a	ENSGT00390000001447.ec.a.b	ENSGT01090000260051.b.b.dc.b.g	ENSGT01030000234567.B.a.a.b.a.a.d	ENSGT00940000164480.a.a.h.a	ENSGT00390000012496.a.d.b #22	ENSGT00390000019377.b.f.h #23	ENSGT00940000154497.B.j	ENSGT00940000161679.a.e	ENSGT00390000015060.kb.a.b	ENSGT00940000168097.a.a	ENSGT00390000016421.b.a.e	ENSGT00940000166160.ab.a	ENSGT00550000074968.i	ENSGT00900000141090.t.sb.b	ENSGT00730000110915.b.d.b	ENSGT00940000158408.k.a	ENSGT01050000244864.C.e.f	ENSGT01050000244864.D.s.b	ENSGT00940000164822.db.a.d	ENSGT00940000164822.db.a.c
Chinook salmon	MODERN SPECIES	22	tbx15 (ENSOTSG00005000384)	ENSOTSG00005000387	gdap2 (ENSOTSG00005000389)	tent5c (ENSOTSG00005000395)	man1a2 (ENSOTSG00005000407)	ENSOTSG00005000413	ENSOTSG00005000415	ENSOTSG00005000423	ENSOTSG00005000431	ENSOTSG00005000439	ENSOTSG00005000440	rpe (ENSOTSG00005000441)	ackr3a (ENSOTSG00005000442)	zp3e (ENSOTSG00005000444)	nhlh2 (ENSOTSG00005000445)	vangl1 (ENSOTSG00005000446) #22	casq2 (ENSOTSG00005000448) #23	KCNE2 (ENSOTSG00005000451)	SLC5A3 (ENSOTSG00005000452)	atp5po (ENSOTSG00005000453)	ENSOTSG00005000455	DOP1B (ENSOTSG00005000456)	morc3a (ENSOTSG00005000460)	chaf1b (ENSOTSG00005000462)	ENSOTSG00005000464	BCL9 (ENSOTSG00005000465)	acp6 (ENSOTSG00005000468)	gja5a (ENSOTSG00005000470)	gja8a (ENSOTSG00005000472)	ENSOTSG00005000475	ENSOTSG00005000474
Coho salmon	MODERN SPECIES	11	glra2 (ENSOKIG00005002538)	mospd2 (ENSOKIG00005002553)	ENSOKIG00005002582	GPR143 (ENSOKIG00005002594)	tbl1x (ENSOKIG00005002621)	ANOS1 (ENSOKIG00005002713)	ENSOKIG00005002745	ENSOKIG00005002750	ENSOKIG00005002758	ENSOKIG00005002781	IGSF3 (ENSOKIG00005002805)	rpe (ENSOKIG00005002820)	ackr3a (ENSOKIG00005002827)	ENSOKIG00005002834	nhlh2 (ENSOKIG00005002843)	vangl1 (ENSOKIG00005002850) #22	casq2 (ENSOKIG00005002871) #23	KCNE2 (ENSOKIG00005002916)	SLC5A3 (ENSOKIG00005002922)	atp5po (ENSOKIG00005002927)	ENSOKIG00005002939	DOP1B (ENSOKIG00005002981)	morc3a (ENSOKIG00005003070)	chaf1b (ENSOKIG00005003095)	ENSOKIG00005003113	BCL9 (ENSOKIG00005003117)	acp6 (ENSOKIG00005003128)	gja5a (ENSOKIG00005003140)	gja8a (ENSOKIG00005003143)	ENSOKIG00005003158	ENSOKIG00005003184
Rainbow trout	MODERN SPECIES	21	tbl1x (ENSOMYG00000013904)	ENSOMYG00000014176	ANOS1 (ENSOMYG00000013940)	ENSOMYG00000054735	ENSOMYG00000050527	ENSOMYG00000014018	ENSOMYG00000014034	ENSOMYG00000068621	ENSOMYG00000014060	ENSOMYG00000060193	ENSOMYG00000014083	ENSOMYG00000014093	ENSOMYG00000014098	nhlh2 (ENSOMYG00000014105)	ENSOMYG00000067696	vangl1 (ENSOMYG00000014112) #22	casq2 (ENSOMYG00000014149) #23	ENSOMYG00000014265	atp5po (ENSOMYG00000014271)	ENSOMYG00000014299	DOP1B (ENSOMYG00000014336)	morc3a (ENSOMYG00000049261)	chaf1b (ENSOMYG00000014428)	ENSOMYG00000014447	ENSOMYG00000063437	BCL9 (ENSOMYG00000014454)	ENSOMYG00000066437	ENSOMYG00000056441	acp6 (ENSOMYG00000014462)	gja5a (ENSOMYG00000049227)	gja8a (ENSOMYG00000014482)
Huchen	MODERN SPECIES	1850																vangl1 (ENSHHUG00000004192) #22	casq2 (ENSHHUG00000004065) #23	SLC5A3 (ENSHHUG00000003985)	atp5po (ENSHHUG00000003884)	ENSHHUG00000003877	DOP1B (ENSHHUG00000003870)	ENSHHUG00000003868	morc3a (ENSHHUG00000003859)	chaf1b (ENSHHUG00000003850)	ENSHHUG00000003846	ENSHHUG00000003817
Northern pike	MODERN SPECIES	15	klhl6 (ENSELUG00000005307)	ENSELUG00000030995	igsf3 (ENSELUG00000005232)	rpe (ENSELUG00000005213)	ackr3a (ENSELUG00000005199)	NQO1 (ENSELUG00000034029)	ENSELUG00000030777	NQO1 (ENSELUG00000005135)	NQO1 (ENSELUG00000005112)	ENSELUG00000026962	zp3a.2 (ENSELUG00000005122)	ENSELUG00000032602	ENSELUG00000033016	NQO1 (ENSELUG00000027214)	nhlh2 (ENSELUG00000005100)	vangl1 (ENSELUG00000005092) #22	casq2 (ENSELUG00000005069) #23	KCNE2 (ENSELUG00000005049)	SLC5A3 (ENSELUG00000005045)	atp5po (ENSELUG00000005034)	ENSELUG00000004944	chaf1b (ENSELUG00000001542)	ENSELUG00000004908	BCL9 (ENSELUG00000004887)	acp6 (ENSELUG00000004869)	gja5a (ENSELUG00000004857)	gja8a (ENSELUG00000004848)	ENSELUG00000004812	ENSELUG00000026943	ENSELUG00000004834	fstl1b (ENSELUG00000004714)
Otomorpha	ANCESTRAL SPECIES	232	ENSGT00940000163874	ENSGT00940000158318	ENSGT00950000182906.b.b	ENSGT00390000016696	ENSGT00390000007467	ENSGT00910000144271.C	ENSGT00390000011275	ENSGT00940000162722	ENSGT00940000161651	ENSGT00940000166972	ENSGT00940000155116.a	ENSGT00940000164246.C.d.a	ENSGT00950000182936.a.a.a	ENSGT00940000159415	ENSGT00940000164480.a.a	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000154497.B	ENSGT00940000161679.a	ENSGT00390000015060	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00550000074968	ENSGT00900000141090	ENSGT00730000110915.b	ENSGT00940000158408	ENSGT01050000244864.C.e
Clupeiformes	ANCESTRAL SPECIES	406									ENSGT00940000154840.b.e.b	ENSGT01050000244827.B	ENSGT00940000154065.b	ENSGT00940000154497.A	ENSGT00940000159870.l	ENSGT00940000159415	ENSGT00940000164480.a.a	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000154497.B	ENSGT00940000161679.a	ENSGT00390000015060
Atlantic herring	MODERN SPECIES	11	tfcp2l1 (ENSCHAG00000017978)	clasp1a (ENSCHAG00000018184)	ENSCHAG00000020700	ENSCHAG00000020721	ENSCHAG00000020744	ENSCHAG00000020732	ENSCHAG00000020765	ENSCHAG00000020871	mab21l3 (ENSCHAG00000023802)	dnajc28 (ENSCHAG00000023810)	ENSCHAG00000023812	rcan1a (ENSCHAG00000023817)	CNGA4 (ENSCHAG00000023820)	AQP8 (ENSCHAG00000023832)	nhlh2 (ENSCHAG00000023984)	vangl1 (ENSCHAG00000023988) #22	casq2 (ENSCHAG00000024013) #23	KCNE2 (ENSCHAG00000024059)	atp5po (ENSCHAG00000024141)	ENSCHAG00000024149	ENSCHAG00000024152	ENSCHAG00000024153	ENSCHAG00000024158	ENSCHAG00000024163	ENSCHAG00000024168	ENSCHAG00000024172	fstl1b (ENSCHAG00000024177)	ENSCHAG00000024330	LRRC58 (ENSCHAG00000024333)	GPR156 (ENSCHAG00000024335)	gsk3ba (ENSCHAG00000024359)
Denticle herring	MODERN SPECIES	19	ENSDCDG00000025626	ENSDCDG00000025624	ENSDCDG00000025620	ENSDCDG00000025614	ENSDCDG00000025608	ENSDCDG00000024836	ENSDCDG00000024809	ENSDCDG00000024807	atp1a1b (ENSDCDG00000019818)	mab21l3 (ENSDCDG00000019722)	dnajc28 (ENSDCDG00000019719)	ENSDCDG00000019718	rcan1a (ENSDCDG00000019717)	CNGA4 (ENSDCDG00000019712)	nhlh2 (ENSDCDG00000019707)	vangl1 (ENSDCDG00000019702) #22	casq2 (ENSDCDG00000019610) #23	KCNE2 (ENSDCDG00000019604)	SLC5A3 (ENSDCDG00000019602)	atp5po (ENSDCDG00000019601)	zgc:162944 (ENSDCDG00000019599)	acod1 (ENSDCDG00000019585)	kctd12.1 (ENSDCDG00000019580)	lmo7a (ENSDCDG00000019367)	uchl3 (ENSDCDG00000019339)	ENSDCDG00000019337	ENSDCDG00000019308	ENSDCDG00000019304	SPEGNB (ENSDCDG00000019303)	CTDSP1 (ENSDCDG00000019298)	ENSDCDG00000018396
Otophysi	ANCESTRAL SPECIES	130	ENSGT00940000158407	ENSGT00390000008096.B.e.a	ENSGT00940000155792	ENSGT00390000007467	ENSGT00910000144271.C.db.a	ENSGT00390000011275	ENSGT00940000162722	ENSGT00940000161651	ENSGT00940000164201.d	ENSGT00940000166972	ENSGT00940000155116.a	ENSGT00940000164246.C.d.a	ENSGT00950000182936.a.a.a	ENSGT00940000159415	ENSGT00940000164480.a.a	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000154497.B	ENSGT00940000161679.a	ENSGT00390000015060	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00550000074968	ENSGT00940000177223	ENSGT00940000173749	ENSGT00940000158408	ENSGT01050000244864.C.e
Characiphysae	ANCESTRAL SPECIES	76										ENSGT00940000166972.r	ENSGT00940000155116.a	ENSGT00940000164246.C.d.a	ENSGT00950000182936.a.a.a	ENSGT00940000159415	ENSGT00940000164480.a.a	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000154497.B	ENSGT00940000161679.a	ENSGT00390000015060	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00550000074968	ENSGT00940000177223	ENSGT00940000173749	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT00940000164374.B.c.a.d	ENSGT01090000260076.b.b.b	ENSGT00390000006574	ENSGT00390000004660.C.b
Channel catfish	MODERN SPECIES	25	rabl3 (ENSIPUG00000012657)	ENSIPUG00000012627	ENSIPUG00000012599	ENSIPUG00000012574	ercc1 (ENSIPUG00000012529)	olig1 (ENSIPUG00000012506)	olig2 (ENSIPUG00000012497)	gatd3 (ENSIPUG00000012484)	mxe (ENSIPUG00000012438)	hpxa (ENSIPUG00000012314)	ENSIPUG00000012286	ENSIPUG00000012279	fhip1b (ENSIPUG00000012196)	cnga4 (ENSIPUG00000012151)	nhlh2 (ENSIPUG00000012150)	vangl1 (ENSIPUG00000012127) #22	casq2 (ENSIPUG00000012090) #23	KCNE2 (ENSIPUG00000012078)	slc5a3 (ENSIPUG00000012070)	atp5o (ENSIPUG00000012023)	drc1 (ENSIPUG00000011986)	ENSIPUG00000011975	DOP1B (ENSIPUG00000011932)	ENSIPUG00000011889	ENSIPUG00000011877	chaf1b (ENSIPUG00000011852)	ENSIPUG00000011846	ENSIPUG00000011832	acp6 (ENSIPUG00000011801)	gja5a (ENSIPUG00000011789)	gja8a (ENSIPUG00000011772)
Characiphysae_b	ANCESTRAL SPECIES	82								ENSGT00940000155686	ENSGT00940000166972.r	ENSGT00940000155116.a	ENSGT00980000198666	ENSGT00980000198655	ENSGT00950000182936.a.a.a	ENSGT00940000159415	ENSGT00940000164480.a.a	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000154497.B	ENSGT00940000161679.a	ENSGT00390000015060	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00550000074968	ENSGT00940000177223	ENSGT00940000173749	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT00940000164374.B.c.a.d	ENSGT01090000260076.b.b.b	ENSGT00390000006574	ENSGT00390000004660.C.b
Characoidei	ANCESTRAL SPECIES	151									ENSGT00940000155686	ENSGT00940000166972.r	ENSGT00940000155116.a	ENSGT00980000198666	ENSGT00950000182936.a.a.a	ENSGT00940000159415	ENSGT00940000164480.a.a	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000154497.B	ENSGT00940000161679.a	ENSGT00390000015060	ENSGT00390000016421.b.a	ENSGT00940000166160	ENSGT00550000074968	ENSGT00940000177223	ENSGT00940000173749	ENSGT00940000158408	ENSGT01050000244864.C.e	ENSGT00940000164374.B.c.a.d	ENSGT01090000260076.b.b.b	ENSGT00390000006574	ENSGT00390000004660.C.b
Red-bellied piranha	MODERN SPECIES	121	rftn2 (ENSPNAG00000008235)	PLCL1 (ENSPNAG00000000792)	satb2 (ENSPNAG00000004753)	dnajb11 (ENSPNAG00000000766)	rabl3 (ENSPNAG00000000748)	ENSPNAG00000000729	ENSPNAG00000008156	ENSPNAG00000008153	ENSPNAG00000008149	ercc1 (ENSPNAG00000007191)	olig1 (ENSPNAG00000000704)	olig2 (ENSPNAG00000008137)	fhip1b (ENSPNAG00000008122)	CNGA4 (ENSPNAG00000000668)	nhlh2 (ENSPNAG00000008099)	vangl1 (ENSPNAG00000000662) #22	casq2 (ENSPNAG00000000653) #23	KCNE2 (ENSPNAG00000000643)	SLC5A3 (ENSPNAG00000008070)	SLC5A3 (ENSPNAG00000008065)	atp5po (ENSPNAG00000000628)	DOP1B (ENSPNAG00000008044)	morc3a (ENSPNAG00000008001)	chaf1b (ENSPNAG00000007990)	ENSPNAG00000007982	ENSPNAG00000007978	acp6 (ENSPNAG00000007971)	gja5a (ENSPNAG00000000556)	gja8a (ENSPNAG00000007960)	ENSPNAG00000007956	si:dkey-18p12.4 (ENSPNAG00000000540)
Mexicana tetra	MODERN SPECIES	107								MX1 (ENSAMXG00000044008)	ENSAMXG00000042757	hpxa (ENSAMXG00000002129)	ENSAMXG00000002128	ENSAMXG00000041528	fhip1b (ENSAMXG00000002120)	CNGA4 (ENSAMXG00000032575)	nhlh2 (ENSAMXG00000029850)	vangl1 (ENSAMXG00000002110) #22	casq2 (ENSAMXG00000002106) #23	KCNE2 (ENSAMXG00000026065)	SLC5A3 (ENSAMXG00000026064)	atp5po (ENSAMXG00000002104)	DOP1B (ENSAMXG00000002101)	ENSAMXG00000038360	ENSAMXG00000002096	chaf1b (ENSAMXG00000002087)	ENSAMXG00000031793	ENSAMXG00000038350	acp6 (ENSAMXG00000002077)	gja5a (ENSAMXG00000043677)	gja8a (ENSAMXG00000002069)	il1rapl1a (ENSAMXG00000002061)	cmss1 (ENSAMXG00000002046)
Electric eel	MODERN SPECIES	22									hpxa (ENSEEEG00000023740)	ENSEEEG00000023737	ENSEEEG00000023733	ENSEEEG00000023730	fhip1b (ENSEEEG00000023727)	CNGA4 (ENSEEEG00000023724)	nhlh2 (ENSEEEG00000023719)	vangl1 (ENSEEEG00000023718) #22	casq2 (ENSEEEG00000023698) #23	KCNE2 (ENSEEEG00000023689)	SLC5A3 (ENSEEEG00000023687)	atp5po (ENSEEEG00000023686)	ENSEEEG00000023684	ENSEEEG00000023683	chaf1b (ENSEEEG00000023681)	ENSEEEG00000023678	ENSEEEG00000023676	ENSEEEG00000023674	acp6 (ENSEEEG00000023673)	gja5a (ENSEEEG00000023669)	rpl8 (ENSEEEG00000023665)	usp9 (ENSEEEG00000022580)	med14 (ENSEEEG00000022365)
Cyprinoidei	ANCESTRAL SPECIES	104	ENSGT00390000008096.B.e.a	ENSGT00940000155792	ENSGT00390000007467	ENSGT00910000144271.C.db.a.a	ENSGT00910000144271.C.db.a.b	ENSGT00390000011275	ENSGT00940000162722	ENSGT00940000161651	ENSGT00940000164201.d	ENSGT00940000166972	ENSGT00940000155116.a	ENSGT00940000164246.C.d.a	ENSGT00950000182936.a.a.a	ENSGT00940000159415	ENSGT00940000164480.a.a	ENSGT00390000012496.a.d #22	ENSGT00390000019377.b.f #23	ENSGT00940000161679.a	ENSGT00390000015060	ENSGT00390000016421.b.a	ENSGT01040000241148
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	16	ENSGT00390000007467.j	ENSGT00910000144271.C.db.a.a.a	ENSGT00910000144271.C.db.a.b.a	ENSGT00910000144271.C.db.a.a.b.a	ENSGT00910000144271.C.db.a.b.b	ENSGT00390000011275	ENSGT00940000162722.a	ENSGT00940000161651.d	ENSGT00390000003706.a.a.s.a	ENSGT00940000164201.d.a.a	ENSGT00940000166972.o	ENSGT00940000155116.a.d	ENSGT00940000164246.C.d.a.d	ENSGT00950000182936.a.a.a.d	ENSGT00940000164480.a.a.a	ENSGT00390000012496.a.d.c #22	ENSGT00390000019377.b.f.b #23	ENSGT00940000161679.a.d	ENSGT00390000015060.gb	ENSGT00390000016421.b.a.c	ENSGT01040000241148	ENSGT00940000161814.g.a.d.c.a	ENSGT00940000155375.o.b	ENSGT00940000153244.B	ENSGT00940000154443.h.a	ENSGT00940000160782.b	ENSGT00940000155600.b.d.b	ENSGT01060000248589.C.g.a.a	ENSGT00990000203619.A.a.c	ENSGT00940000166446.b	ENSGT00940000166292.c.a.a
Goldfish	MODERN SPECIES	27	dnajb11 (ENSCARG00000070233)	rabl3 (ENSCARG00000070224)	ENSCARG00000070219	gzm3.4 (ENSCARG00000070218)	ENSCARG00000070217	ercc1 (ENSCARG00000070216)	ENSCARG00000070214	olig1 (ENSCARG00000070213)	olig2 (ENSCARG00000070211)	ENSCARG00000070183	hpxa (ENSCARG00000070168)	ENSCARG00000070166	ENSCARG00000070165	fhip1b (ENSCARG00000070162)	nhlh2 (ENSCARG00000070160)	vangl1 (ENSCARG00000070158) #22	ENSCARG00000070157	casq2 (ENSCARG00000070147) #23	SLC5A3 (ENSCARG00000070145)	atp5po (ENSCARG00000070142)	ENSCARG00000070140	ENSCARG00000070138	usp9 (ENSCARG00000070127)	rpl8 (ENSCARG00000070123)	ddx3xa (ENSCARG00000070002)	nyx (ENSCARG00000069959)	gpr34b (ENSCARG00000069956)	GPR82 (ENSCARG00000069952)	caska (ENSCARG00000069874)	mao (ENSCARG00000069831)	ENSCARG00000069799
Cyprininae_a	ANCESTRAL SPECIES	31	ENSGT00940000155792.e	ENSGT00390000007467.j	ENSGT00910000144271.C.db.a.a.b.a	ENSGT00910000144271.C.db.a.a.a	ENSGT00910000144271.C.db.a.b.a	ENSGT00390000011275	ENSGT00940000162722.a	ENSGT00940000161651.d	ENSGT00390000003706.a.a.s.a	ENSGT00940000164201.d.a.a	ENSGT00940000166972.o	ENSGT00940000155116.a.d	ENSGT00940000164246.C.d.a.d	ENSGT00950000182936.a.a.a.d	ENSGT00940000164480.a.a.a	ENSGT00390000012496.a.d.c #22	ENSGT01100000263568.b.a.c.b.b.a.b.a	ENSGT00390000019377.b.f.b #23	ENSGT00940000161679.a.d	ENSGT00390000015060.gb	ENSGT00390000016421.b.a.c	ENSGT01040000241148	ENSGT00940000161814.g.a.d.c.a	ENSGT00940000155375.o.b	ENSGT00940000153244.B.g	ENSGT00940000154443.h.a	ENSGT00940000160782.b	ENSGT00940000155600.b.d.b	ENSGT01060000248589.C.g.a.a	ENSGT00990000203619.A.a.c	ENSGT00940000166446.b
Common carp reference	MODERN SPECIES	41	satb2 (ENSCCRG00000018581)	dnajb11 (ENSCCRG00000067985)	ENSCCRG00000003444	ENSCCRG00000003371	ercc1 (ENSCCRG00000059279)	olig1 (ENSCCRG00000080077)	olig2 (ENSCCRG00000051550)	gatd3 (ENSCCRG00000069597)	ENSCCRG00000078968	ENSCCRG00000026563	ENSCCRG00000055674	ENSCCRG00000063348	hpxa (ENSCCRG00000043255)	fhip1b (ENSCCRG00000002501)	nhlh2 (ENSCCRG00000067895)	vangl1 (ENSCCRG00000002485) #22	casq2 (ENSCCRG00000002443) #23	ENSCCRG00000055393	ENSCCRG00000037801	ENSCCRG00000058759	atp5po (ENSCCRG00000010715)	ENSCCRG00000010719	ENSCCRG00000066388	ENSCCRG00000054680	usp9 (ENSCCRG00000013998)	rpl8 (ENSCCRG00000066809)	ddx3xa (ENSCCRG00000079586)	nyx (ENSCCRG00000014064)	caska (ENSCCRG00000074376)	GPR82 (ENSCCRG00000064640)	mao (ENSCCRG00000052851)
Golden-line barbel	MODERN SPECIES	208	dnajb11 (ENSSGRG00000052225)	rabl3 (ENSSGRG00000052219)	ENSSGRG00000052218	ENSSGRG00000052217	ENSSGRG00000052216	ercc1 (ENSSGRG00000052214)	olig1 (ENSSGRG00000052213)	olig2 (ENSSGRG00000052212)	gatd3 (ENSSGRG00000052211)	ENSSGRG00000052182	hpxa (ENSSGRG00000052181)	ENSSGRG00000052180	ENSSGRG00000052179	fhip1b (ENSSGRG00000052177)	fhip1b (ENSSGRG00000052176)	vangl1 (ENSSGRG00000052175) #22	ENSSGRG00000052174	casq2 (ENSSGRG00000052111) #23	SLC5A3 (ENSSGRG00000052104)	atp5po (ENSSGRG00000052103)	DOP1B (ENSSGRG00000052099)	usp9 (ENSSGRG00000049979)	rpl8 (ENSSGRG00000049912)	ddx3xa (ENSSGRG00000048009)	gpr34b (ENSSGRG00000047983)	GPR82 (ENSSGRG00000047982)	caska (ENSSGRG00000047146)	mao (ENSSGRG00000047065)	ENSSGRG00000047059	fundc1 (ENSSGRG00000047056)	ENSSGRG00000035879
Cyprininae	ANCESTRAL SPECIES	263	ENSGT01050000244956.b.w.a.a	ENSGT00530000063609.a.c	ENSGT00940000158407.d	ENSGT00390000008096.B.e.a.a	ENSGT00940000155792.f	ENSGT00390000007467.i	ENSGT00910000144271.C.db.a.a.b.b	ENSGT00940000162722.b	ENSGT00940000161651.c	ENSGT00390000003706.a.a.s.b	ENSGT00940000164201.d.a.b	ENSGT00940000164246.C.d.a.c	ENSGT00950000182936.a.a.a.c	ENSGT00940000159415	ENSGT00940000164480.a.a.b	ENSGT00390000012496.a.d.d #22	ENSGT00940000162818.c.a.g.a.c	ENSGT00940000161814.g.a.d.c.b.a.a.a.a	ENSGT00390000019377.b.f.a #23	ENSGT00940000161679.a.c	ENSGT00390000015060.fb	ENSGT00390000016421.b.a.d
Cyprininae_a	ANCESTRAL SPECIES	349	ENSGT00530000063609.a.c	ENSGT00940000158407.d	ENSGT00390000008096.B.e.a.a	ENSGT00940000155792.f	ENSGT00390000007467.i	ENSGT00910000144271.C.db.a.a.b.b	ENSGT00910000144271.C.db.a.b.b	ENSGT00940000162722.b	ENSGT00940000161651.c	ENSGT00390000003706.a.a.s.b	ENSGT00940000155116.a.c	ENSGT00940000164246.C.d.a.c	ENSGT00950000182936.a.a.a.c	ENSGT00940000159415	ENSGT00940000164480.a.a.b	ENSGT00390000012496.a.d.d #22	ENSGT00940000162818.c.a.g.a.c	ENSGT00940000161814.g.a.d.c.b.a.a.a.a	ENSGT00390000019377.b.f.a #23	ENSGT00940000161679.a.c	ENSGT00390000015060.fb	ENSGT00390000016421.b.a.d
Common carp reference	MODERN SPECIES	46	satb2 (ENSCCRG00000019510)	dnajb11 (ENSCCRG00000057596)	rabl3 (ENSCCRG00000037485)	ENSCCRG00000064107	ENSCCRG00000050423	ENSCCRG00000029032	ENSCCRG00000071698	olig1 (ENSCCRG00000070193)	ENSCCRG00000061176	gatd3 (ENSCCRG00000059500)	ENSCCRG00000053552	ENSCCRG00000010686	fhip1b (ENSCCRG00000010687)	ENSCCRG00000010691	nhlh2 (ENSCCRG00000062686)	vangl1 (ENSCCRG00000082261) #22	ENSCCRG00000023493	ENSCCRG00000005987	ENSCCRG00000082260	casq2 (ENSCCRG00000025811) #23	ENSCCRG00000076861	atp5po (ENSCCRG00000002434)	ENSCCRG00000040647	ENSCCRG00000078187	ENSCCRG00000011643	ENSCCRG00000068974	ENSCCRG00000013983	ENSCCRG00000081306	usp9 (ENSCCRG00000028441)	rpl8 (ENSCCRG00000055439)	ddx3xa (ENSCCRG00000065876)
Golden-line barbel	MODERN SPECIES	27	satb2 (ENSSGRG00000052210)	dnajb11 (ENSSGRG00000052215)	rabl3 (ENSSGRG00000052306)	ENSSGRG00000052307	ENSSGRG00000052308	ercc1 (ENSSGRG00000052315)	olig1 (ENSSGRG00000052317)	olig2 (ENSSGRG00000052318)	gatd3 (ENSSGRG00000052319)	ENSSGRG00000052323	ENSSGRG00000052345	ENSSGRG00000052346	fhip1b (ENSSGRG00000052347)	CNGA4 (ENSSGRG00000052348)	nhlh2 (ENSSGRG00000052349)	vangl1 (ENSSGRG00000052350) #22	ENSSGRG00000052351	ENSSGRG00000052352	ENSSGRG00000052353	casq2 (ENSSGRG00000052354) #23	SLC5A3 (ENSSGRG00000052396)	atp5po (ENSSGRG00000052397)	DOP1B (ENSSGRG00000052402)
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	49	rftn2 (ENSCARG00000026736)	PLCL1 (ENSCARG00000026678)	satb2 (ENSCARG00000026647)	dnajb11 (ENSCARG00000026615)	rabl3 (ENSCARG00000026571)	ENSCARG00000026559	ENSCARG00000026553	olig2 (ENSCARG00000026546)	gatd3 (ENSCARG00000026527)	hpxa (ENSCARG00000026393)	ENSCARG00000026381	ENSCARG00000026376	fhip1b (ENSCARG00000056532)	ENSCARG00000056484	nhlh2 (ENSCARG00000056473)	vangl1 (ENSCARG00000056449) #22	ENSCARG00000056426	ENSCARG00000056415	casq2 (ENSCARG00000055523) #23	SLC5A3 (ENSCARG00000055473)	atp5po (ENSCARG00000055386)	DOP1B (ENSCARG00000055323)	slc35a5 (ENSCARG00000055293)	f5 (ENSCARG00000053911)	gpr161b (ENSCARG00000053821)	dcaf6 (ENSCARG00000053805)	dcaf6 (ENSCARG00000053732)	nyx (ENSCARG00000053575)	gpr34b (ENSCARG00000053550)	GPR82 (ENSCARG00000053544)	caska (ENSCARG00000051129)
Goldfish	MODERN SPECIES	49	ENSCARG00000043606	ENSCARG00000043616	dnajb11 (ENSCARG00000043645)	rabl3 (ENSCARG00000043760)	ENSCARG00000043920	ENSCARG00000043959	olig1 (ENSCARG00000044014)	olig2 (ENSCARG00000044031)	gatd3 (ENSCARG00000044039)	hpxa (ENSCARG00000044080)	ENSCARG00000044375	ENSCARG00000044388	fhip1b (ENSCARG00000044412)	ENSCARG00000044444	nhlh2 (ENSCARG00000044497)	vangl1 (ENSCARG00000044505) #22	ENSCARG00000044526	ENSCARG00000044544	ENSCARG00000012329	casq2 (ENSCARG00000012415) #23	SLC5A3 (ENSCARG00000013773)	atp5po (ENSCARG00000013775)	ENSCARG00000013794	ENSCARG00000013799	ENSCARG00000013803	ENSCARG00000013804	usp9 (ENSCARG00000013860)	KLF5 (ENSCARG00000014027)	klf12b (ENSCARG00000014034)	wars2 (ENSCARG00000014048)	tbx15 (ENSCARG00000014064)
Zebrafish	MODERN SPECIES	24	gzm3 (ENSDARG00000078451)	ENSDARG00000055986	gzm3.3 (ENSDARG00000093990)	gzm3.4 (ENSDARG00000076814)	ercc1 (ENSDARG00000031680)	olig1 (ENSDARG00000040948)	olig2 (ENSDARG00000040946)	gatd3 (ENSDARG00000020618)	mxc (ENSDARG00000024789)	mxe (ENSDARG00000014427)	hpxa (ENSDARG00000012609)	ENSDARG00000007077	fhip1b (ENSDARG00000078188)	ENSDARG00000069383	nhlh2 (ENSDARG00000025495)	vangl1 (ENSDARG00000004305) #22	ENSDARG00000069381	zgc:172053 (ENSDARG00000038321)	casq2 (ENSDARG00000008982) #23	si:ch211-125e6.8 (ENSDARG00000094518)	SLC5A3 (ENSDARG00000077812)	atp5po (ENSDARG00000001788)	DOP1B (ENSDARG00000055857)	ENSDARG00000115642	si:ch211-125e6.11 (ENSDARG00000025783)	si:ch211-125e6.12 (ENSDARG00000092090)	si:ch211-125e6.13 (ENSDARG00000094370)	ENSDARG00000094183	lectin (ENSDARG00000055833)	usp9 (ENSDARG00000013708)	rpl8 (ENSDARG00000014867)
Spotted gar	MODERN SPECIES	655	ercc1 (ENSLOCG00000006213)	gzm3.4 (ENSLOCG00000006230)	rabl3 (ENSLOCG00000006265)	gtf2e1 (ENSLOCG00000006285)	stxbp5l (ENSLOCG00000006301)	gatd3 (ENSLOCG00000006346)	MX1 (ENSLOCG00000006363)	ENSLOCG00000006389	ENSLOCG00000006439	ENSLOCG00000006464	ENSLOCG00000006484	ENSLOCG00000006514	fhip1b (ENSLOCG00000006531)	CNGA4 (ENSLOCG00000006552)	nhlh2 (ENSLOCG00000017787)	vangl1 (ENSLOCG00000006574) #22	casq2 (ENSLOCG00000006580) #23	poglut1 (ENSLOCG00000006595)	timmdc1 (ENSLOCG00000006630)	KCNE2 (ENSLOCG00000017788)	atp5po (ENSLOCG00000006652)	ITSN1 (ENSLOCG00000006667)	cryzl1 (ENSLOCG00000006728)	setd4 (ENSLOCG00000006764)	cbr1 (ENSLOCG00000006781)	DOP1B (ENSLOCG00000006795)	MORC3 (ENSLOCG00000006832)	chaf1b (ENSLOCG00000006847)	ENSLOCG00000006876	bcl9 (ENSLOCG00000006913)	acp6 (ENSLOCG00000006932)
Reedfish	MODERN SPECIES	12	igsf3 (ENSECRG00000005427)	ENSECRG00000005420	ENSECRG00000005409	ENSECRG00000005391	ENSECRG00000005374	ENSECRG00000005337	ENSECRG00000005323	ENSECRG00000005051	ENSECRG00000004992	atp1a1a.2 (ENSECRG00000002714)	mab21l3 (ENSECRG00000002517)	ENSECRG00000002505	SLC22A15 (ENSECRG00000002483)	ENSECRG00000002471	nhlh2 (ENSECRG00000002461)	vangl1 (ENSECRG00000002451) #22	casq2 (ENSECRG00000002434) #23	poglut1 (ENSECRG00000002414)	TIMMDC1 (ENSECRG00000002396)	KCNE2 (ENSECRG00000002381)	MRPS6 (ENSECRG00000002372)	atp5po (ENSECRG00000002359)	ITSN1 (ENSECRG00000002170)	cryzl1 (ENSECRG00000002041)	setd4 (ENSECRG00000001990)	cbr1 (ENSECRG00000001971)	DOP1B (ENSECRG00000001911)	ENSECRG00000001865	ENSECRG00000001831	chaf1b (ENSECRG00000001809)	ENSECRG00000001795
Elephant shark	MODERN SPECIES	1505	ENSCMIG00000009901	FRMPD4 (ENSCMIG00000009879)	MSL3 (ENSCMIG00000009842)	ENSCMIG00000009639	grk1a (ENSCMIG00000009454)	TMCO3 (ENSCMIG00000009398)	ENSCMIG00000009381	ENSCMIG00000009378	ENSCMIG00000009376	ENSCMIG00000009374	ENSCMIG00000009372	atp1a1a.2 (ENSCMIG00000007050)	mab21l3 (ENSCMIG00000006180)	SLC22A15 (ENSCMIG00000006160)	nhlh2 (ENSCMIG00000006141)	vangl1 (ENSCMIG00000006139) #22	casq2 (ENSCMIG00000006130) #23	ENSCMIG00000006115	blzf1 (ENSCMIG00000006114)	nme7 (ENSCMIG00000006099)	atp1b1b (ENSCMIG00000006084)	dpt (ENSCMIG00000006082)	ENSCMIG00000006080	ENSCMIG00000006076	ENSCMIG00000006074	yap1 (ENSCMIG00000006071)	cfap300 (ENSCMIG00000006065)	ENSCMIG00000006059	ENSCMIG00000006052	birc2 (ENSCMIG00000006045)	ENSCMIG00000006035